HHsearch alignment for GI: 254780388 and conserved domain: cd01457
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=94.67 E-value=0.3 Score=26.35 Aligned_cols=81 Identities=12% Similarity=0.226 Sum_probs=44.4
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-EEEEEEECCCCCCCCCHHH---HHHHHHHH-
Q ss_conf 566665641256777776458899999862366665444456677750-6999996066888854089---99999998-
Q gi|254780388|r 321 RTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAK-KYIVLLTDGENTQDNEEGI---AICNKAKS- 395 (458)
Q Consensus 321 ~~~~~~~i~~~~~~g~T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~-K~iil~TDG~n~~~~~~~~---~~C~~~K~- 395 (458)
T Consensus 66 ~~~V~~iF~~~~P~G~T~~g~~L~~il~~y~~r~~~------~~~kp~g~~iIVITDG~p~D~~av~~~Ii~aa~kLd~~ 139 (199)
T cd01457 66 SSKVDQLFAENSPDGGTNLAAVLQDALNNYFQRKEN------GATCPEGETFLVITDGAPDDKDAVERVIIKASDELDAD 139 (199)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHC------CCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 999999985589899796379999998999873200------68999860799982799798288999999999863440
Q ss_pred CCCEEEEEEECC
Q ss_conf 796899999437
Q gi|254780388|r 396 QGIRIMTIAFSV 407 (458)
Q Consensus 396 ~gI~IytI~f~~ 407 (458)
T Consensus 140 ~qlgIqF~QVG~ 151 (199)
T cd01457 140 NELAISFLQIGR 151 (199)
T ss_pred CCCCEEEEEECC
T ss_conf 100367778559