HHsearch alignment for GI: 254780388 and conserved domain: cd01464
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.32 E-value=5e-11 Score=88.81 Aligned_cols=154 Identities=16% Similarity=0.112 Sum_probs=100.5
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 06677766522112346775666520121100677665565576812100566665641256777776458899999862
Q gi|254780388|r 271 KHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTI 350 (458)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~T~~~~gl~~g~~~L 350 (458)
T Consensus 21 i~~~k~al~~~~~~L~~d~~a~~~~~vsVItF~s~a~~~~pl~~~--------~~~~~~~L~a~G~T~~g~al~~a~~~l 92 (176)
T cd01464 21 IEALNQGLQMLQSELRQDPYALESVEISVITFDSAARVIVPLTPL--------ESFQPPRLTASGGTSMGAALELALDCI 92 (176)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHEEEEEEEEECCCEEEECCCCCH--------HHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 999999999999997118310113269999978951780586347--------664755477789981999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCEEE
Q ss_conf 36666544445667775069999960668888540899999999879689999943788743117899986068983788
Q gi|254780388|r 351 ISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFE 430 (458)
Q Consensus 351 s~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs~~~yy~ 430 (458)
T Consensus 93 ~~~~~~~~~--~~~~~~~P~I~LlTDG~PtD~~~~~~~~~~~~~~~~~~i~a~giG~da-----d~~~L~~is~~--~~~ 163 (176)
T cd01464 93 DRRVQRYRA--DQKGDWRPWVFLLTDGEPTDDLTAAIERIKEARDSKGRIVACAVGPKA-----DLDTLKQITEG--VPL 163 (176)
T ss_pred HHHHHHCCC--CCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCC-----CHHHHHHHHCC--CCC
T ss_conf 986522365--566775317999668998875899999999888639769999973871-----89999988577--745
Q ss_pred ECCHHHHHHHH
Q ss_conf 29989999999
Q gi|254780388|r 431 ANSTHELNKIF 441 (458)
Q Consensus 431 a~~~~eL~~aF 441 (458)
T Consensus 164 ~~~~~~f~~ff 174 (176)
T cd01464 164 LDDALSGLNFF 174 (176)
T ss_pred CCCHHHHHHHH
T ss_conf 34534588850