HHsearch alignment for GI: 254780388 and conserved domain: cd01465
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=99.72 E-value=2.9e-16 Score=122.23 Aligned_cols=148 Identities=17% Similarity=0.163 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 06677766522112346775666520121100677665565576812100566665641256777776458899999862
Q gi|254780388|r 271 KHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTI 350 (458)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~T~~~~gl~~g~~~L 350 (458)
T Consensus 18 ~~~~k~a~~~~l~~l~------~~dr~~iv~F~~~~~~~~~~~~~---~~~~~~~~~i~~l~~~G~T~~~~~l~~a~~~~ 88 (170)
T cd01465 18 LPLVKSALKLLVDQLR------PDDRLAIVTYDGAAETVLPATPV---RDKAAILAAIDRLTAGGSTAGGAGIQLGYQEA 88 (170)
T ss_pred HHHHHHHHHHHHHHCC------CCCEEEEEEECCCCEECCCCCCH---HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9999999999998589------87879999835861551587866---67999999874389899852779999999999
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCH---HHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHC--CC
Q ss_conf 36666544445667775069999960668888540---89999999987968999994378874311789998606--89
Q gi|254780388|r 351 ISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEE---GIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCA--SP 425 (458)
Q Consensus 351 s~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~---~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CA--s~ 425 (458)
T Consensus 89 ~~~~---------~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~i~i~tiGiG~~~-----~~~~L~~iA~~~~ 154 (170)
T cd01465 89 QKHF---------VPGGVNRILLATDGDFNVGETDPDELARLVAQKRESGITLSTLGFGDNY-----NEDLMEAIADAGN 154 (170)
T ss_pred HHCC---------CCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC-----CHHHHHHHHHCCC
T ss_conf 8633---------7887506999815885679889899999999987438862489808879-----9999999997579
Q ss_pred CCEEEECCHHHHHHHH
Q ss_conf 8378829989999999
Q gi|254780388|r 426 NSFFEANSTHELNKIF 441 (458)
Q Consensus 426 ~~yy~a~~~~eL~~aF 441 (458)
T Consensus 155 G~~~~v~~~~~l~~~f 170 (170)
T cd01465 155 GNTAYIDNLAEARKVF 170 (170)
T ss_pred CEEEECCCHHHHHHHC
T ss_conf 8899849999999639