HHsearch alignment for GI: 254780388 and conserved domain: cd01470
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=99.36 E-value=3e-11 Score=90.26 Aligned_cols=156 Identities=16% Similarity=0.183 Sum_probs=94.0
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-----CCCCCCCHHHHHHHHH
Q ss_conf 77766522112346775666520121100677665565576812100566665641256-----7777764588999998
Q gi|254780388|r 274 VRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN-----EMGSTAINDAMQTAYD 348 (458)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~g~T~~~~gl~~g~~ 348 (458)
T Consensus 21 ~k~Fv~~lv~~~~~~~~---~~rvgvv~ys~~~~~~f~l~~~~~-~~~~~~~~~i~~i~y~~~~~~~gT~t~~AL~~~~~ 96 (198)
T cd01470 21 AKNAIKTLIEKISSYEV---SPRYEIISYASDPKEIVSIRDFNS-NDADDVIKRLEDFNYDDHGDKTGTNTAAALKKVYE 96 (198)
T ss_pred HHHHHHHHHHHHCCCCC---CCEEEEEEECCCCEEEEECCCCCC-CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999999998446687---753899981588538997157666-68999999998460335778864689999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCH------------HHHHHHHHHHCCCEEEEEEECCCCCCCCHHH
Q ss_conf 6236666544445667775069999960668888540------------8999999998796899999437887431178
Q gi|254780388|r 349 TIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEE------------GIAICNKAKSQGIRIMTIAFSVNKTQQEKAR 416 (458)
Q Consensus 349 ~Ls~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~------------~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~ 416 (458)
T Consensus 97 ~~~~~~~~~~---~~~~~v~~v~illTDG~sn~g~~P~~~~~~~~~~~~~~~~a~~~r~~gi~ifaiGVG~~~d-----~ 168 (198)
T cd01470 97 RMALEKVRNK---EAFNETRHVIILFTDGKSNMGGSPLPTVDKIKNLVYKNNKSDNPREDYLDVYVFGVGDDVN-----K 168 (198)
T ss_pred HHHHHHHCCC---CCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC-----H
T ss_conf 8655530466---4445675599997378545789933678887776641014567887394799999666159-----9
Q ss_pred HHHHHHCCC--C--CEEEECCHHHHHHHH
Q ss_conf 999860689--8--378829989999999
Q gi|254780388|r 417 YFLSNCASP--N--SFFEANSTHELNKIF 441 (458)
Q Consensus 417 ~~lk~CAs~--~--~yy~a~~~~eL~~aF 441 (458)
T Consensus 169 ~eL~~IAS~~~~e~hvf~v~df~~L~~i~ 197 (198)
T cd01470 169 EELNDLASKKDNERHFFKLKDYEDLQEVF 197 (198)
T ss_pred HHHHHHHCCCCCCCEEEEECCHHHHHHHH
T ss_conf 99999857999871699968999999863