HHsearch alignment for GI: 254780388 and conserved domain: cd01472
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=99.16 E-value=2.2e-09 Score=78.33 Aligned_cols=139 Identities=17% Similarity=0.200 Sum_probs=90.6
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHHHCC
Q ss_conf 777665221123467756665201211006776655655768121005666656412567-7777645889999986236
Q gi|254780388|r 274 VRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENE-MGSTAINDAMQTAYDTIIS 352 (458)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~T~~~~gl~~g~~~Ls~ 352 (458)
T Consensus 21 ~k~fi~~li~~~~i~---~~~~rvgvv~fs~~~~~~~~l~~~---~~~~~l~~~i~~i~~~~g~t~~~~AL~~~~~~~~~ 94 (164)
T cd01472 21 VKDFVKRVVERLDIG---PDGVRVGVVQYSDDPRTEFYLNTY---RSKDDVLEAVKNLRYIGGGTNTGKALKYVRENLFT 94 (164)
T ss_pred HHHHHHHHHHHCCCC---CCCCEEEEEEECCCEEEEECCCCC---CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC
T ss_conf 999999999964768---886089999824741587445466---98899999998611668975299999999998635
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCC---CCEE
Q ss_conf 6665444456677750699999606688885408999999998796899999437887431178999860689---8378
Q gi|254780388|r 353 SNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASP---NSFF 429 (458)
Q Consensus 353 ~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs~---~~yy 429 (458)
T Consensus 95 ~~~~------~r~~~~kvvvllTDG~s~---~~~~~~a~~lr~~Gi~v~~VGig~------~~~~~L~~iAs~p~~~~~~ 159 (164)
T cd01472 95 EASG------SREGVPKVLVVITDGKSQ---DDVEEPAVELKQAGIEVFAVGVKN------ADEEELKQIASDPKELYVF 159 (164)
T ss_pred CCCC------CCCCCEEEEEEEECCCCC---CHHHHHHHHHHHCCCEEEEEECCC------CCHHHHHHHHCCCCHHEEE
T ss_conf 3578------767851599998379986---408899999998898899997884------7999999996799378389
Q ss_pred EECC
Q ss_conf 8299
Q gi|254780388|r 430 EANS 433 (458)
Q Consensus 430 ~a~~ 433 (458)
T Consensus 160 ~~~~ 163 (164)
T cd01472 160 NVAD 163 (164)
T ss_pred ECCC
T ss_conf 6588