HHsearch alignment for GI: 254780388 and conserved domain: cd01482
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=98.94 E-value=6.1e-08 Score=69.08 Aligned_cols=139 Identities=17% Similarity=0.237 Sum_probs=86.2
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCCCCCCCHHHHHHHHHHHCC
Q ss_conf 7776652211234677566652012110067766556557681210056666564125-677777645889999986236
Q gi|254780388|r 274 VRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDE-NEMGSTAINDAMQTAYDTIIS 352 (458)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~g~T~~~~gl~~g~~~Ls~ 352 (458)
T Consensus 21 ~k~fi~~lv~~f~i---~~~~~rvgvv~ys~~~~~~~~l~~~~---~~~~l~~~i~~i~~~~g~t~~~~AL~~~~~~~f~ 94 (164)
T cd01482 21 VRSFLSSVVEAFEI---GPDGVQVGLVQYSDDPRTEFDLNAYT---SKEDVLAAIKNLPYKGGNTRTGKALTHVREKNFT 94 (164)
T ss_pred HHHHHHHHHHHCCC---CCCCEEEEEEEECCCCEEEECCCCCC---CHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 99999999996476---88862899999447512787343469---9899999986402668997289999999998615
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCC-C--CCEE
Q ss_conf 666544445667775069999960668888540899999999879689999943788743117899986068-9--8378
Q gi|254780388|r 353 SNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCAS-P--NSFF 429 (458)
Q Consensus 353 ~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs-~--~~yy 429 (458)
T Consensus 95 ~~~g------~R~~~~kvlvliTDG~s~---d~~~~~a~~lr~~gv~i~~VGVg~-~---~--~~eL~~IAs~P~~~hvf 159 (164)
T cd01482 95 PDAG------ARPGVPKVVILITDGKSQ---DDVELPARVLRNLGVNVFAVGVKD-A---D--ESELKMIASKPSETHVF 159 (164)
T ss_pred HHCC------CCCCCCEEEEEECCCCCC---CHHHHHHHHHHHCCCEEEEEECCC-C---C--HHHHHHHHCCCCHHCEE
T ss_conf 0028------988886079996079884---338999999998893899997883-7---8--99999996898566179
Q ss_pred EECC
Q ss_conf 8299
Q gi|254780388|r 430 EANS 433 (458)
Q Consensus 430 ~a~~ 433 (458)
T Consensus 160 ~~~~ 163 (164)
T cd01482 160 NVAD 163 (164)
T ss_pred ECCC
T ss_conf 7479