HHsearch alignment of GI: 254780388 and MMDB domain: 1pt6_A_
>1pt6_A (A:) Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo sapiens}
Probab=99.11 E-value=2.8e-09 Score=77.19 Aligned_cols=152 Identities=17% Similarity=0.135 Sum_probs=102.6
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEE
Q ss_conf 66652012110067766556557681210056666564125677777645889999986236666544445667775069
Q gi|254780388|r 291 VNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKY 370 (458)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~ 370 (458)
.....+.+...|+.......++..... .......+..+...+++....|.........-.... ........|+
T Consensus 40 ~~~~~~v~iv~f~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 112 (213)
T 1pt6_A 40 GPKQTQVGIVQYGENVTHEFNLNKYSS---TEEVLVAAKKIVQRGGRQTMTALGTDTARKEAFTEA----RGARRGVKKV 112 (213)
T ss_dssp STTSBEEEEEEESSSEEEEECTTTCSS---HHHHHHHHHTCCCCCCSSCCHHHHHHHHHHTTTSGG----GTCCTTCEEE
T ss_pred CCCCCEEEEEEEEEEEEEEEECCCCCC---HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC----CCCCCCCCEE
T ss_conf 888738999999644789982666676---899999998787616854502677778888751422----3777899547
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCC----CHHHHHHHHHCC---CCCEEEECCHHHHHHHHHH
Q ss_conf 999960668888540899999999879689999943788743----117899986068---9837882998999999999
Q gi|254780388|r 371 IVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQ----EKARYFLSNCAS---PNSFFEANSTHELNKIFRD 443 (458)
Q Consensus 371 iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~----~~~~~~lk~CAs---~~~yy~a~~~~eL~~aF~~ 443 (458)
+|++|||..+.. .........+|+.|++||+|+++.+.+.. ......|+..|+ .++||.+.+.++|.++|++
T Consensus 113 iiliTDG~~~~~-~~~~~~~~~~~~~~v~i~~igig~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~l~~~~~~ 191 (213)
T 1pt6_A 113 MVIVTDGESHDN-HRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKT 191 (213)
T ss_dssp EEEEESSCCSCS-HHHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHH
T ss_pred EEEEECCCCCCC-HHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCHHHHHHHHHH
T ss_conf 999956888884-2089999999988998999997166554443431359999998669985508992899999999999
Q ss_pred HHHHHHH
Q ss_conf 9875875
Q gi|254780388|r 444 RIGNEIF 450 (458)
Q Consensus 444 ~i~~~~~ 450 (458)
+..+...
T Consensus 192 i~~~~~~ 198 (213)
T 1pt6_A 192 LGERIFA 198 (213)
T ss_dssp HHHHHTC
T ss_pred HHHHHHC
T ss_conf 9999835