HHsearch alignment of GI: 254780388 and MMDB domain: 1yvr_A_365-538
>1yvr_A (A:365-538) RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis}
Probab=98.86 E-value=1.7e-07 Score=65.91 Aligned_cols=125 Identities=13% Similarity=0.076 Sum_probs=84.4
Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 52012110067766556557681210056666564125677777645889999986236666544445667775069999
Q gi|254780388|r 294 TVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVL 373 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~iil 373 (458)
..+.+...|+.......+++..... .........+.|+|++..+|.++.+.+.. .+.+|+
T Consensus 43 ~~~v~li~F~~~~~~~~~~~~~~~~-----~~~~~l~~~~~g~T~~~~al~~a~~~~~~---------------~~~ii~ 102 (174)
T 1yvr_A 43 EKDSHMVAFSDEMLPCPITVNMLLH-----EVVEKMSDITMGSTDCALPMLWAQKTNTA---------------ADIFIV 102 (174)
T ss_dssp CSSEEEEEESSSEECCSCCTTSCHH-----HHHHHHTTCCCSCCCTTHHHHHHHHTTCC---------------CSEEEE
T ss_pred CCCCEEEEECCCEEECCCCCCCHHH-----HHHHHHHCCCCCCCHHHHHHHHHHHCCCC---------------CCEEEE
T ss_conf 5997799976965878998654099-----99999853678983599999999962656---------------888999
Q ss_pred EECCCCCCCCCH---HHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHH
Q ss_conf 960668888540---899999999879689999943788743117899986068983788299899999999998
Q gi|254780388|r 374 LTDGENTQDNEE---GIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDRI 445 (458)
Q Consensus 374 ~TDG~n~~~~~~---~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs~~~yy~a~~~~eL~~aF~~~i 445 (458)
+|||+.+..... .....+.++..+|.+|+|+++...... ......+....+....+..+.+.++.
T Consensus 103 iTDG~~~~~~~~~~~~~~~~~~~~~~~v~~~~vg~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~ 170 (174)
T 1yvr_A 103 FTDCETNVEDVHPATALKQYREKMGIPAKLIVCAMTSNGFSI-------ADPDDRGMLDICGFDSGALDVIRNFT 170 (174)
T ss_dssp EECCCCCSSSCCHHHHHHHHHHHHTCCCEEEEEECSSSSEES-------SCTTCTTEEEEETTCTTHHHHHHHHH
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-------CCCCCCCEEEEECCCHHHHHHHHHHH
T ss_conf 717986789889999999999984899749999766888787-------78899995898468777999999998