HHsearch alignment of GI: 254780388 and MMDB domain: 2ww8_A_221-279_318-447_506-585
>2ww8_A (A:221-279,A:318-447,A:506-585) RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=99.90 E-value=5.4e-23 Score=164.81 Aligned_cols=166 Identities=14% Similarity=0.160 Sum_probs=113.7
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHH---------HHHHHHHHHHHHCCCCCCCCC
Q ss_conf 43306677766522112346775666520121100677665565576812---------100566665641256777776
Q gi|254780388|r 268 IKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVH---------KLIRTIVKTFAIDENEMGSTA 338 (458)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~i~~~~~~g~T~ 338 (458)
..+++..+.....++...... ...+.+.+.|+..........+... ..+...+...++.+.+.|+|+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~----~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~i~~~~~~GgT~ 100 (269)
T 2ww8_A 25 ARRAERAGEATRSLIDKITSD----SENRVALVTYASTIDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATF 100 (269)
T ss_dssp CCHHHHHHHHHHHHHHHHHTS----TTCEEEEEEESSSBBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCC
T ss_pred CEEEEECCCCEEEEEEEEEEC----CCCEEEEEEECCCCCCCEEEEEECCCCEEEECCEEEEEECCCCCCCEEECCCCEE
T ss_conf 305652264504642577753----7860578840231042025554125411330310123210245641010146246
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC-------------------------------------
Q ss_conf 4588999998623666654444566777506999996066888-------------------------------------
Q gi|254780388|r 339 INDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQ------------------------------------- 381 (458)
Q Consensus 339 ~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~iil~TDG~n~~------------------------------------- 381 (458)
.+.||.|+++.+.+.+ .....|+|||||||.++.
T Consensus 101 ~~~AL~~a~~~l~~~~---------~~~~~kvIiliTDG~~~~~~~~~~~~~~~~~~~~v~i~~i~~~~~~~~~~~~~~~ 171 (269)
T 2ww8_A 101 TQKALMKADEILTQQA---------RQNSQKVIFHITDGVPTMSYPINFNHATFAPSYQNQLNAFFSKSPNKDGILLSDF 171 (269)
T ss_dssp HHHHHHHHHHHHHHHS---------CSSSEEEEEEEESSCCSEECCBCCCCSTTCCCHHHHHHHHHHTSTTSSSCCGGGB
T ss_pred EEEECCCCCEEEEECC---------CCCCCEEEEECCCCCCCEEECCCCCCCCCCEEEECCCEEEEEECCCCCEEEECCE
T ss_conf 6530022414776215---------7765204786156631000001344541004763131056651121120661110
Q ss_pred ----------------------------CCCHHHHHHHHHHHCCCEEEEEEECCCCCCC---CHHHHHHHHHCC-CCCEE
Q ss_conf ----------------------------8540899999999879689999943788743---117899986068-98378
Q gi|254780388|r 382 ----------------------------DNEEGIAICNKAKSQGIRIMTIAFSVNKTQQ---EKARYFLSNCAS-PNSFF 429 (458)
Q Consensus 382 ----------------------------~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~---~~~~~~lk~CAs-~~~yy 429 (458)
.+.++..+|+++|++||+||||||+.+++.. +.++++||+||| |.|||
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~k~~~i~i~ti~~~~~~~~~~~~~~~~~~l~~cas~~~~y~ 251 (269)
T 2ww8_A 172 ITQATSGEHTIVRGDGQSNSNTAKITNHGDPTRWYYNGNIAPDGYDVFTVGIGINGDPGTDEATATSFMQSISSKPENYT 251 (269)
T ss_dssp CCCCTTCGGGTCEECSSCTCSSCCBCBSHHHHHHHHHHHTGGGCCEEEEEEESCCCTTTSCHHHHHHHHHHTSSSGGGEE
T ss_pred EEEECCCCCEEECCCCEECCCCEEEEECCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCEE
T ss_conf 12310122102037742753205762047430578875204676303577677156421002343057756611665326
Q ss_pred EECCHHHHHHHHHHHHHHHHH
Q ss_conf 829989999999999875875
Q gi|254780388|r 430 EANSTHELNKIFRDRIGNEIF 450 (458)
Q Consensus 430 ~a~~~~eL~~aF~~~i~~~~~ 450 (458)
+|. ||.++|++ |+++++
T Consensus 252 ~~~---~~~~~f~~-ia~~~~ 268 (269)
T 2ww8_A 252 NVT---DTTKILEQ-LNRYFH 268 (269)
T ss_dssp EES---SGGGHHHH-HHHHHT
T ss_pred EEC---CCCCEECC-CCCCCE
T ss_conf 405---66511113-355412