HHsearch results for GI: 254780388 and protein with PDBid: 1mjn_A
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=98.74 E-value=8.1e-08 Score=66.91 Aligned_cols=132 Identities=15% Similarity=0.147 Sum_probs=82.3
Q ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 01211006776655655768121005666656412-56777776458899999862366665444456677750699999
Q gi|254780388|r 296 RMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAID-ENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLL 374 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~g~T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~iil~ 374 (458)
+.....|........++.. ...+..+...+.. ....|+|+...++.++...+....+.. .+...|++|++
T Consensus 40 ~~~v~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~g~~~~~~al~~a~~~~~~~~~~~------r~~~~k~ivll 110 (179)
T 1mjn_A 40 QFAAVQFSTSYKTEFDFSD---YVKRKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGA------RPDATKVLIII 110 (179)
T ss_dssp EEEEEEESSSEEEEECHHH---HHHHCCHHHHHTTCCCCCBCCCHHHHHHHHHHHTSSGGGTC------CTTSEEEEEEE
T ss_pred EEEEEEEEECCEECCCCCC---CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC------CCCCCEEEEEE
T ss_conf 6999998602111135212---04699999987512557898327889999999985453068------99871489998
Q ss_pred ECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCC---CCEEEECCHHHHHHHHHHH
Q ss_conf 606688885408999999998796899999437887431178999860689---8378829989999999999
Q gi|254780388|r 375 TDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASP---NSFFEANSTHELNKIFRDR 444 (458)
Q Consensus 375 TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs~---~~yy~a~~~~eL~~aF~~~ 444 (458)
|||+.+..... .+..++.++.+++...... ......|+..||. .++|.+.+-++|.+.++++
T Consensus 111 TDG~~~~~~~~-------~~~~~~~~~~~~i~~~~~~-~~~~~~L~~ias~~~~~~~~~~~~~~~L~~~~~~l 175 (179)
T 1mjn_A 111 TDGEATDSGNI-------DAAKDIIRYIIGIGKHFQT-KESQETLHKFASKPASEFVKILDTFEKLKDLCTEL 175 (179)
T ss_dssp ESSCCSSCSCC-------GGGTTSEEEEEEESGGGCS-HHHHHTTGGGSCSCHHHHEEEESSGGGSCCHHHHH
T ss_pred CCCCCCCCHHH-------HHHHCCEEEEEEEEECCCC-CCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHH
T ss_conf 07998860689-------9982986889999946886-01799999985799863399879999999999999