HHsearch results for GI: 254780388 and protein with PDBid: 1pt6_A
>1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=99.28 E-value=1.3e-10 Score=84.75 Aligned_cols=144 Identities=19% Similarity=0.177 Sum_probs=96.4
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC--CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEE
Q ss_conf 6520121100677665565576812100566665641256777--77645889999986236666544445667775069
Q gi|254780388|r 293 DTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMG--STAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKY 370 (458)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g--~T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~ 370 (458)
...+.+...|+.......++... .++..+...+..+...+ +|+...+|.++...+.....+. .++..|+
T Consensus 42 ~~~rv~vv~y~~~~~~~~~l~~~---~~~~~~~~~i~~~~~~~g~~t~~~~al~~a~~~~~~~~~g~------R~~~~k~ 112 (213)
T 1pt6_A 42 KQTQVGIVQYGENVTHEFNLNKY---SSTEEVLVAAKKIVQRGGRQTMTALGTDTARKEAFTEARGA------RRGVKKV 112 (213)
T ss_dssp TSBEEEEEEESSSEEEEECTTTC---SSHHHHHHHHHTCCCCCCSSCCHHHHHHHHHHTTTSGGGTC------CTTCEEE
T ss_pred CCCEEEEEEEEEEEEEEECCCCC---CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCC------CCCCEEE
T ss_conf 77378899974236899776556---77999999987777507841002123434443201322478------7786689
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCC----CHHHHHHHHHCCC---CCEEEECCHHHHHHHHHH
Q ss_conf 999960668888540899999999879689999943788743----1178999860689---837882998999999999
Q gi|254780388|r 371 IVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQ----EKARYFLSNCASP---NSFFEANSTHELNKIFRD 443 (458)
Q Consensus 371 iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~----~~~~~~lk~CAs~---~~yy~a~~~~eL~~aF~~ 443 (458)
+|++|||..+. ........+.+|++||+||+||++...+.. .....-|+..||+ .++|.+.+-++|.+.+++
T Consensus 113 villTDG~~~d-~~~~~~~~~~lk~~gi~v~~Vgvg~~~~~~~~~~~~~~~eL~~iAs~p~~~~~f~~~~~~~L~~i~~~ 191 (213)
T 1pt6_A 113 MVIVTDGESHD-NHRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKT 191 (213)
T ss_dssp EEEEESSCCSC-SHHHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHH
T ss_pred EEEEECCCCCC-CHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHH
T ss_conf 99984698788-41599999999988999999997476554543332469999998669985408980899999999999
Q ss_pred HHH
Q ss_conf 987
Q gi|254780388|r 444 RIG 446 (458)
Q Consensus 444 ~i~ 446 (458)
+..
T Consensus 192 l~~ 194 (213)
T 1pt6_A 192 LGE 194 (213)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999