HHsearch results for GI: 254780388 and protein with PDBid: 2nvo_A

>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- sheet, RNA binding protein; 1.89A {Deinococcus radiodurans}

Probab=96.93  E-value=0.018  Score=32.77  Aligned_cols=65  Identities=11%  Similarity=0.117  Sum_probs=43.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHH---HHCCCEEEEEEECC
Q ss_conf             567777764588999998623666654444566777506999996066888854089999999---98796899999437
Q gi|254780388|r  331 ENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKA---KSQGIRIMTIAFSV  407 (458)
Q Consensus       331 ~~~~g~T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~C~~~---K~~gI~IytI~f~~  407 (458)
                      ..+.|+|+++.+|.|+.+.-               ...+.+|++|||+.+.++.....+-+..   ...+.++++|++..
T Consensus       435 ~~~~ggT~~~~~l~~a~~~~---------------~~~D~iIllTD~e~~~g~~~p~~al~~yr~~~~~~~klv~v~l~~  499 (535)
T 2nvo_A          435 SVSFGGTDCAQPILWAAQER---------------LDVDTFVVYTDNETWAGQVHPTVALDQYAQKMGRAPKLIVVGLTA  499 (535)
T ss_dssp             CSSBCCCCTTHHHHHHHHTT---------------CCCSEEEEEESSCCCCCSSCHHHHHHHHHHHHSCCCEEEEEETTC
T ss_pred             HCCCCCCHHHHHHHHHHHCC---------------CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf             15789966999999998565---------------458989998089977899999999999999718997189998037


Q ss_pred             CCC
Q ss_conf             887
Q gi|254780388|r  408 NKT  410 (458)
Q Consensus       408 ~~~  410 (458)
                      .+.
T Consensus       500 ~~~  502 (535)
T 2nvo_A          500 TEF  502 (535)
T ss_dssp             SCC
T ss_pred             CCC
T ss_conf             888