HHSEARCH alignment of GI: 254780388 and SCOP domain: d1jeya2

Alignment

Probab=98.80  E-value=7.6e-08  Score=65.58  Aligned_cols=112  Identities=12%  Similarity=0.116  Sum_probs=69.1

Q ss_pred             HHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCH-----HHHHHHHHHHCCCEEEE
Q ss_conf             4125677777645889999986236666544445667775069999960668888540-----89999999987968999
Q gi|254780388|r  328 AIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEE-----GIAICNKAKSQGIRIMT  402 (458)
Q Consensus       328 i~~~~~~g~T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~-----~~~~C~~~K~~gI~Iyt  402 (458)
                      .....+.|+|++..+|..+.+++....         .....|.|||+|||+++.....     ....++.+++.||.||+
T Consensus        99 ~~~~~~~~~t~l~~al~~a~~~~~~~~---------~~~~~k~IiliTDg~~~~~~~~~~~~~~~~~a~~~~~~gv~i~~  169 (220)
T d1jeya2          99 QDMMGHGSDYSLSEVLWVCANLFSDVQ---------FKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDL  169 (220)
T ss_dssp             HHHHCCSCCCCHHHHHHHHHHHHHTCS---------SCEEEEEEEEEESCSCTTTTCHHHHHHHHHHHHHHHHHTEEEEE
T ss_pred             HHCCCCCCCCCHHHHHHHHHHHHHHCC---------CCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEE
T ss_conf             202467888629999999999987401---------34577589998059988888512457799998877630651799


Q ss_pred             EEECCCCCCCCH--HHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHH
Q ss_conf             994378874311--7899986068983788299899999999998758
Q gi|254780388|r  403 IAFSVNKTQQEK--ARYFLSNCASPNSFFEANSTHELNKIFRDRIGNE  448 (458)
Q Consensus       403 I~f~~~~~~~~~--~~~~lk~CAs~~~yy~a~~~~eL~~aF~~~i~~~  448 (458)
                      |+++.+.+....  .+++++.-..++..++-.+.+.|.+..+++..++
T Consensus       170 i~ig~~~~~d~~~f~~~~l~~~~~~~~~~~~~~~~~l~~l~~~i~~k~  217 (220)
T d1jeya2         170 MHLKKPGGFDISLFYRDIISIAEDEDLRVHFEESSKLEDLLRKVRAKE  217 (220)
T ss_dssp             EEBCCTTCCCTTTTGGGTCC--------CCCCCBCSHHHHHHHHHHHH
T ss_pred             EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             983787875511668998721136667610686466999999998751

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Ku70 subunit N-terminal domain
domain: Ku70 subunit N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]