Query gi|254780388|ref|YP_003064801.1| hypothetical protein CLIBASIA_01365 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 458
No_of_seqs 119 out of 522
Neff 10.4
Searched_HMMs 13730
Date Wed Jun 1 04:16:12 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780388.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q0pa_ c.62.1.1 (A:) Compleme 99.5 2.3E-13 1.7E-17 100.8 13.4 167 272-450 20-207 (209)
2 d1shux_ c.62.1.1 (X:) Capillar 99.5 2.5E-12 1.8E-16 94.2 15.3 137 294-447 40-179 (181)
3 d1n3ya_ c.62.1.1 (A:) Integrin 99.4 4.4E-12 3.2E-16 92.6 14.5 144 294-447 38-185 (189)
4 d1ijba_ c.62.1.1 (A:) von Will 99.3 2E-10 1.4E-14 82.1 18.0 155 274-447 34-194 (202)
5 d1mf7a_ c.62.1.1 (A:) Integrin 99.3 1.4E-11 9.9E-16 89.5 11.2 144 294-447 41-188 (194)
6 d1pt6a_ c.62.1.1 (A:) Integrin 99.3 1.6E-10 1.2E-14 82.6 15.8 143 293-445 36-187 (192)
7 d1atza_ c.62.1.1 (A:) von Will 99.3 8.6E-11 6.2E-15 84.4 14.2 148 274-441 23-174 (184)
8 d1v7pc_ c.62.1.1 (C:) Integrin 99.2 1.1E-09 7.9E-14 77.4 15.6 161 275-449 21-190 (193)
9 d1mjna_ c.62.1.1 (A:) Integrin 98.9 4.3E-09 3.2E-13 73.5 10.5 136 293-445 37-176 (179)
10 d1jeyb2 c.62.1.4 (B:6-241) Ku8 98.9 3.6E-08 2.6E-12 67.6 13.2 132 268-409 23-165 (236)
11 d1jeya2 c.62.1.3 (A:34-253) Ku 98.8 7.6E-08 5.5E-12 65.6 12.7 112 328-448 99-217 (220)
12 d1tyeb2 c.62.1.1 (B:107-354) I 98.2 4.9E-05 3.6E-09 47.6 14.9 116 320-447 93-244 (248)
13 d1yvra2 c.62.1.5 (A:364-537) 6 97.8 0.00038 2.7E-08 42.0 12.7 91 330-442 75-171 (174)
14 d2b3ga1 b.40.4.3 (A:3-114) Rep 22.6 5.3 0.00039 15.5 -1.0 31 365-395 35-66 (112)
15 d2iw0a1 c.6.2.3 (A:29-248) Chi 20.4 12 0.00089 13.1 0.4 36 368-403 171-206 (220)
No 1
>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.51 E-value=2.3e-13 Score=100.80 Aligned_cols=167 Identities=13% Similarity=0.122 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC-----CCCCCCCCHHHHHHH
Q ss_conf 667776652211234677566652012110067766556557681210056666564125-----677777645889999
Q gi|254780388|r 272 HLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDE-----NEMGSTAINDAMQTA 346 (458)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~g~T~~~~gl~~g 346 (458)
+..+.++..++..+... ....+.+...|+.......++..... .....+...++.+ .+.|+|+...+|.++
T Consensus 20 ~~~k~~~~~li~~l~~~---~~~~rv~lv~f~~~~~~~~~l~~~~~-~~~~~l~~~i~~i~~~~~~~~g~t~~~~al~~a 95 (209)
T d1q0pa_ 20 TGAKKSLVNLIEKVASY---GVKPRYGLVTYATYPKIWVKVSEADS-SNADWVTKQLNEINYEDHKLKSGTNTKKALQAV 95 (209)
T ss_dssp HHHHHHHHHHHHHHHTT---TCCCEEEEEEESSSEEEEECTTSGGG-GCHHHHHHHHHTCCTTSCSCTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCC---CCCCEEEEEEECCCEEEEECCCCCHH-HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 99999999999961047---88767999996585058864765116-678999999997210136678885498999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHH------------HHHHHHCCCEEEEEEECCCCCCCCH
Q ss_conf 9862366665444456677750699999606688885408999------------9999987968999994378874311
Q gi|254780388|r 347 YDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAI------------CNKAKSQGIRIMTIAFSVNKTQQEK 414 (458)
Q Consensus 347 ~~~Ls~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~------------C~~~K~~gI~IytI~f~~~~~~~~~ 414 (458)
...+.....+.. ...++..|++||+|||..+......... +..++..||.||+||++...+
T Consensus 96 ~~~~~~~~~~~~---~~~~~~~kvvvl~TDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~i~~vgvg~~~~---- 168 (209)
T d1q0pa_ 96 YSMMSWPDDVPP---EGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVN---- 168 (209)
T ss_dssp HHHHCCTTSSCC---TTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSSCCC----
T ss_pred HHHHHHHHCCCC---CCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC----
T ss_conf 999975222476---5667775189997578766789858999999985443789999986699559842776689----
Q ss_pred HHHHHHHHCC-C---CCEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 7899986068-9---8378829989999999999875875
Q gi|254780388|r 415 ARYFLSNCAS-P---NSFFEANSTHELNKIFRDRIGNEIF 450 (458)
Q Consensus 415 ~~~~lk~CAs-~---~~yy~a~~~~eL~~aF~~~i~~~~~ 450 (458)
...|+.+|+ + .+||.+.+.++|.++|.+|+.+..+
T Consensus 169 -~~~L~~iAs~~~~~~~~f~~~~~~~L~~~~~~ii~~~~s 207 (209)
T d1q0pa_ 169 -QVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQS 207 (209)
T ss_dssp -HHHHHHHSCCCTTCCCEEETTC-----------------
T ss_pred -HHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf -999999974989971599938999999999999885257
No 2
>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.46 E-value=2.5e-12 Score=94.24 Aligned_cols=137 Identities=15% Similarity=0.166 Sum_probs=99.0
Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 52012110067766556557681210056666564125677777645889999986236666544445667775069999
Q gi|254780388|r 294 TVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVL 373 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~iil 373 (458)
..+.+...|+.......++......... ....+..+.+.|+|+...+|..+.+.+.... ..+..|++|+
T Consensus 40 ~~rvglv~fs~~~~~~~~l~~~~~~~~~--~l~~l~~~~~~g~t~~~~al~~~~~~~~~~~---------~~~~~~~ivl 108 (181)
T d1shux_ 40 EMRLSFIVFSSQATIILPLTGDRGKISK--GLEDLKRVSPVGETYIHEGLKLANEQIQKAG---------GLKTSSIIIA 108 (181)
T ss_dssp TEEEEEEEESSSEEEEEEEECCHHHHHH--HHHHHHTCCCCSCCCHHHHHHHHHHHHHHHT---------GGGSCEEEEE
T ss_pred CCEEEEEEEECCEEEEEEECCCHHHHHH--HHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC---------CCCCCEEEEE
T ss_conf 9789999960423799972488899999--7653222367785068999999998763003---------5787528999
Q ss_pred EECCCCCCCCCH-HHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCC-CCCEEEECC-HHHHHHHHHHHHHH
Q ss_conf 960668888540-899999999879689999943788743117899986068-983788299-89999999999875
Q gi|254780388|r 374 LTDGENTQDNEE-GIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCAS-PNSFFEANS-THELNKIFRDRIGN 447 (458)
Q Consensus 374 ~TDG~n~~~~~~-~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs-~~~yy~a~~-~~eL~~aF~~~i~~ 447 (458)
+|||..+..... .....+.+|+.||.||+||++. . ....|+..|+ ++++|.+.+ -++|.+.+.+++.+
T Consensus 109 iTDG~~~~~~~~~~~~~~~~~k~~gv~v~~vgig~-~-----~~~~L~~ia~~~~~~~~~~~~~~~L~~~~~~i~~~ 179 (181)
T d1shux_ 109 LTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD-F-----EQAQLERIADSKEQVFPVKGGFQALKGIINSILAQ 179 (181)
T ss_dssp EECCCCCTTHHHHHHHHHHHHHHTTCEEEEEECSS-C-----CHHHHHHHSSSGGGEEESSSTTHHHHHHHHHHHHT
T ss_pred ECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECC-C-----CHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHH
T ss_conf 24787788863899999999997898899999685-4-----89999998489996599459999999999999863
No 3
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.42 E-value=4.4e-12 Score=92.65 Aligned_cols=144 Identities=15% Similarity=0.169 Sum_probs=100.1
Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 520121100677665565576812100566665641256-7777764588999998623666654444566777506999
Q gi|254780388|r 294 TVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN-EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIV 372 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~g~T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~ii 372 (458)
..+.+...|+.......++... .+...+...+..+. .+|+|+...+|.++.+.+....... .++..|++|
T Consensus 38 ~~rv~vv~fs~~~~~~~~l~~~---~~~~~~~~~i~~~~~~~g~t~~~~al~~a~~~~f~~~~~~------r~~~~kviv 108 (189)
T d1n3ya_ 38 STQFSLMQFSNKFQTHFTFEEF---RRSSNPLSLLASVHQLQGFTYTATAIQNVVHRLFHASYGA------RRDAAKILI 108 (189)
T ss_dssp TEEEEEEEESSSEEEEECHHHH---HHCSSGGGGGTTCCCCCSCBCHHHHHHHHHTTTTSGGGTC------CTTSEEEEE
T ss_pred CCEEEEEEEECCCEEECCCCCC---CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCC------CCCCCEEEE
T ss_conf 8789999953121010023540---0288999998754343300138999999999984111278------888732799
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCC---CCEEEECCHHHHHHHHHHHHHH
Q ss_conf 99606688885408999999998796899999437887431178999860689---8378829989999999999875
Q gi|254780388|r 373 LLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASP---NSFFEANSTHELNKIFRDRIGN 447 (458)
Q Consensus 373 l~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs~---~~yy~a~~~~eL~~aF~~~i~~ 447 (458)
++|||..+........++..+|+.||.||+||++...+... ...-|+.+||. +++|.+.+-++|.+.++++..+
T Consensus 109 llTDG~~~~~~~~~~~~~~~~~~~gv~i~~Vgig~~~~~~~-~~~~L~~ias~~~~~~~~~~~~~~~l~~i~~~i~~~ 185 (189)
T d1n3ya_ 109 VITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNRN-SWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEK 185 (189)
T ss_dssp EEESSCCBSCSSCHHHHHHHHHHTTCEEEEEEESGGGGSST-THHHHHHHSCSSSGGGEEEESSGGGGGGGHHHHHHH
T ss_pred EEECCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCC-CHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf 99568988883239999999998799438983365556633-399999996699866089828999999999999975
No 4
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.32 E-value=2e-10 Score=82.07 Aligned_cols=155 Identities=12% Similarity=0.140 Sum_probs=103.9
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC--CCCHHHHHHHHHHHC
Q ss_conf 777665221123467756665201211006776655655768121005666656412567777--764588999998623
Q gi|254780388|r 274 VRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGS--TAINDAMQTAYDTII 351 (458)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~--T~~~~gl~~g~~~Ls 351 (458)
.+..+..++...... ....+.+...|+.......++.+. .++..+...+..+...|+ |+...+|.++.+.+.
T Consensus 34 ~k~fv~~~i~~l~~~---~~~~rvavv~y~~~~~~~~~l~~~---~~~~~l~~~i~~l~~~~g~~~~~~~al~~~~~~~~ 107 (202)
T d1ijba_ 34 LKAFVVDMMERLRVS---QKWVRVAVVEYHDGSHAYIGLKDR---KRPSELRRIASQVKYAGSQVASTSEVLKYTLFQIF 107 (202)
T ss_dssp HHHHHHHHHHTBCBS---TTSEEEEEEEESSSEEEEECTTCC---CCHHHHHHHHHTCCCCCBSCCCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHCCC---CCCCEEEEEEEECCEEEECCCCCC---CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 999999999973258---887379999974230352277652---06999999998665552001009999999999765
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC-CHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCC---CCC
Q ss_conf 66665444456677750699999606688885-40899999999879689999943788743117899986068---983
Q gi|254780388|r 352 SSNEDEVHRMKNNLEAKKYIVLLTDGENTQDN-EEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCAS---PNS 427 (458)
Q Consensus 352 ~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~-~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs---~~~ 427 (458)
... ..+...|++|++|||...... .......+.+|+.||+||+||++...+. ..|+..|+ ..+
T Consensus 108 ~~~--------~r~~~~k~vivitdg~~~~~~~~~~~~~~~~l~~~gv~i~~Vgig~~~~~-----~~L~~ia~~~~~~~ 174 (202)
T d1ijba_ 108 SKI--------DRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHANL-----KQIRLIEKQAPENK 174 (202)
T ss_dssp SSC--------SCTTSEEEEEEEECCCCCGGGCTTHHHHHHHHHHTTEEEEEEEESTTSCH-----HHHHHHHHHCTTCC
T ss_pred HHC--------CCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCH-----HHHHHHHCCCCCCC
T ss_conf 520--------47777515788534688864216899999999985996899985785799-----99999851899676
Q ss_pred EEEECCHHHHHHHHHHHHHH
Q ss_conf 78829989999999999875
Q gi|254780388|r 428 FFEANSTHELNKIFRDRIGN 447 (458)
Q Consensus 428 yy~a~~~~eL~~aF~~~i~~ 447 (458)
+|.+.+-++|.+.+.+++..
T Consensus 175 ~~~~~~~~~L~~~~~~i~~~ 194 (202)
T d1ijba_ 175 AFVLSSVDELEQQRDEIVSY 194 (202)
T ss_dssp CEEESSGGGHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHH
T ss_conf 89958999999999999998
No 5
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.31 E-value=1.4e-11 Score=89.51 Aligned_cols=144 Identities=17% Similarity=0.167 Sum_probs=100.2
Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 5201211006776655655768121005666656412567-777764588999998623666654444566777506999
Q gi|254780388|r 294 TVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENE-MGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIV 372 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~ii 372 (458)
..+.+...|+.......++.. ..+...+...+..+.. +|+|....+|.++.+.+...... ..+...|++|
T Consensus 41 ~~rv~vv~fs~~~~~~~~l~~---~~~~~~~~~~i~~i~~~~~~t~~~~al~~~~~~~~~~~~~------~~~~~~kvvv 111 (194)
T d1mf7a_ 41 KTLFSLMQYSEEFRIHFTFKE---FQNNPNPRSLVKPITQLLGRTHTATGIRKVVRELFNITNG------ARKNAFKILV 111 (194)
T ss_dssp TEEEEEEEESSSEEEEECHHH---HHHSCCHHHHHTTCCCCCSCBCHHHHHHHHHHTTTSGGGT------CCTTSEEEEE
T ss_pred CCEEEEEEEECCCEEEEECCC---CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC------CCCCCCEEEE
T ss_conf 836999997224025775266---5778999999764555321015779999999998756425------7889735999
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCC---CCEEEECCHHHHHHHHHHHHHH
Q ss_conf 99606688885408999999998796899999437887431178999860689---8378829989999999999875
Q gi|254780388|r 373 LLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASP---NSFFEANSTHELNKIFRDRIGN 447 (458)
Q Consensus 373 l~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs~---~~yy~a~~~~eL~~aF~~~i~~ 447 (458)
++|||..+............+|..||+||+||++...+. ......|+.+||. .++|.+.+-++|.+.+.++..+
T Consensus 112 liTDG~~~~~~~~~~~~~~~~~~~gv~i~~VGi~~~~~~-~~~~~~L~~ias~~~~~~~~~~~~~~~L~~~~~~l~~~ 188 (194)
T d1mf7a_ 112 VITDGEKFGDPLGYEDVIPEADREGVIRYVIGVGDAFRS-EKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLREK 188 (194)
T ss_dssp EEESSCCBSCSSCGGGTHHHHHHTTEEEEEEEESGGGCS-HHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCC-CCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf 982689899805599999999985990599805776665-25699999996599877199959999999999999887
No 6
>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.29 E-value=1.6e-10 Score=82.58 Aligned_cols=143 Identities=18% Similarity=0.176 Sum_probs=95.2
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC--CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEE
Q ss_conf 65201211006776655655768121005666656412567777--7645889999986236666544445667775069
Q gi|254780388|r 293 DTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGS--TAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKY 370 (458)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~--T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~ 370 (458)
...+.+...|+.......++... .++..+...+..+...++ ++...++.++...+....++. .++..|+
T Consensus 36 ~~~rv~vv~fs~~~~~~~~l~~~---~~~~~~~~~i~~~~~~~g~~~~~~~al~~~~~~~~~~~~g~------R~~~~kv 106 (192)
T d1pt6a_ 36 KQTQVGIVQYGENVTHEFNLNKY---SSTEEVLVAAKKIVQRGGRQTMTALGTDTARKEAFTEARGA------RRGVKKV 106 (192)
T ss_dssp TSBEEEEEEESSSEEEEECTTTC---SSHHHHHHHHHTCCCCCCSSCCHHHHHHHHHHTTTSGGGTC------CTTCEEE
T ss_pred CCCEEEEEEEECCEEEEEECCCC---HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC------CCCCCEE
T ss_conf 87379999984127899727764---04689999886555442211015789877777630123589------8886158
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCC----CHHHHHHHHHCCC---CCEEEECCHHHHHHHHHH
Q ss_conf 999960668888540899999999879689999943788743----1178999860689---837882998999999999
Q gi|254780388|r 371 IVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQ----EKARYFLSNCASP---NSFFEANSTHELNKIFRD 443 (458)
Q Consensus 371 iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~----~~~~~~lk~CAs~---~~yy~a~~~~eL~~aF~~ 443 (458)
+|++|||..+.. ......++.+|++||+||+||++...+.. ....+-|+.+||. .++|.+.+-.+|.+.+++
T Consensus 107 iillTDG~~~d~-~~~~~~a~~lk~~gi~v~~igvg~~~~~~~~~~~~~~~~L~~IAs~p~~~~~f~v~d~~~L~~i~~~ 185 (192)
T d1pt6a_ 107 MVIVTDGESHDN-HRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKT 185 (192)
T ss_dssp EEEEESSCCSCS-HHHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHH
T ss_pred EEEEECCCCCCC-HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCHHHHHHHHHH
T ss_conf 999966887763-0269999999977996999997055554543431369999998669985508983899999999999
Q ss_pred HH
Q ss_conf 98
Q gi|254780388|r 444 RI 445 (458)
Q Consensus 444 ~i 445 (458)
+.
T Consensus 186 i~ 187 (192)
T d1pt6a_ 186 LG 187 (192)
T ss_dssp HH
T ss_pred HH
T ss_conf 98
No 7
>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.28 E-value=8.6e-11 Score=84.39 Aligned_cols=148 Identities=14% Similarity=0.126 Sum_probs=100.0
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHCC
Q ss_conf 77766522112346775666520121100677665565576812100566665641256-77777645889999986236
Q gi|254780388|r 274 VRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN-EMGSTAINDAMQTAYDTIIS 352 (458)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~g~T~~~~gl~~g~~~Ls~ 352 (458)
.+..+..++...... ....+.+...|+.......++... .+...+...++.+. .+|.|+...++..+...+..
T Consensus 23 ~k~~v~~~i~~~~i~---~~~~rv~vv~f~~~~~~~~~l~~~---~~~~~l~~~i~~l~~~gg~t~~~~al~~~~~~~~~ 96 (184)
T d1atza_ 23 MKSFAKAFISKANIG---PRLTQVSVLQYGSITTIDVPWNVV---PEKAHLLSLVDVMQREGGPSQIGDALGFAVRYLTS 96 (184)
T ss_dssp HHHHHHHHHHHSCBS---TTSEEEEEEEESSSEEEEECTTCC---CCHHHHHHHHHTCCCCCCCCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCC---CCCCEEEEEEEECCCEEECCCCCC---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 999999999965879---887589999984221155155456---63999999987301011000102466677887632
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCC---CCEE
Q ss_conf 6665444456677750699999606688885408999999998796899999437887431178999860689---8378
Q gi|254780388|r 353 SNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASP---NSFF 429 (458)
Q Consensus 353 ~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs~---~~yy 429 (458)
...+. .++..|++|++|||..+. ......+.+|+.||+||+||++...+ ...|+.+||+ .+.|
T Consensus 97 ~~~g~------R~~~~kvvvlltdg~~~d---~~~~~a~~lk~~gi~v~~igiG~~~~-----~~~L~~ias~~~~~~~~ 162 (184)
T d1atza_ 97 EMHGA------RPGASKAVVILVTDVSVD---SVDAAADAARSNRVTVFPIGIGDRYD-----AAQLRILAGPAGDSNVV 162 (184)
T ss_dssp CCTTC------CTTSEEEEEEEECSCCSS---CCHHHHHHHHHTTEEEEEEEESSSSC-----HHHHHHHTGGGGGGGCE
T ss_pred HHCCC------CCCCCEEEEEEEECCCCC---HHHHHHHHHHHCCCEEEEEEECCCCC-----HHHHHHHHCCCCCCCEE
T ss_conf 43178------889815999998067653---06689999997595899999588599-----99999985788856389
Q ss_pred EECCHHHHHHHH
Q ss_conf 829989999999
Q gi|254780388|r 430 EANSTHELNKIF 441 (458)
Q Consensus 430 ~a~~~~eL~~aF 441 (458)
.+.+.++|...-
T Consensus 163 ~~~~~~~L~~~~ 174 (184)
T d1atza_ 163 KLQRIEDLPTMV 174 (184)
T ss_dssp EESSTTHHHHHH
T ss_pred EECCHHHHHHHH
T ss_conf 937988888899
No 8
>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.18 E-value=1.1e-09 Score=77.37 Aligned_cols=161 Identities=16% Similarity=0.126 Sum_probs=102.7
Q ss_pred HHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHHHHHCC
Q ss_conf 7766522112346775666520121100677665565576812100566665641256--77777645889999986236
Q gi|254780388|r 275 RDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN--EMGSTAINDAMQTAYDTIIS 352 (458)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~g~T~~~~gl~~g~~~Ls~ 352 (458)
+.....++..... .....+.+...|+.......++... .+...+...+..+. .+|+|+...+|.++.+.+..
T Consensus 21 k~f~~~ii~~~~i---~~~~~rv~vv~fs~~~~~~~~l~~~---~~~~~~~~~i~~~~~~~g~~t~~~~AL~~a~~~~f~ 94 (193)
T d1v7pc_ 21 KNFLEKFVQGLDI---GPTKTQVGLIQYANNPRVVFNLNTY---KTKEEMIVATSQTSQYGGDLTNTFGAIQYARKYAYS 94 (193)
T ss_dssp HHHHHHHHHTSCB---STTSEEEEEEEESSSEEEEECTTTC---SSHHHHHHHHHHCCCCCCSCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCC---CCCCCEEEEEEEECCEEEEECCCCH---HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
T ss_conf 9999999997255---8876079999852011355046630---367899999874443225764268899888874146
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCC----CCHHHHHHHHHCCC---
Q ss_conf 66654444566777506999996066888854089999999987968999994378874----31178999860689---
Q gi|254780388|r 353 SNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQ----QEKARYFLSNCASP--- 425 (458)
Q Consensus 353 ~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~----~~~~~~~lk~CAs~--- 425 (458)
..+. ..++..|++|++|||..+ ........++.+|+.||+||+||++...+. .......|+.+||+
T Consensus 95 ~~~~------~R~~~~kvvVllTDG~s~-d~~~~~~~~~~~~~~gv~v~~Igvg~~~~~~~~~~~~~~~~L~~Ias~p~~ 167 (193)
T d1v7pc_ 95 AASG------GRRSATKVMVVVTDGESH-DGSMLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTE 167 (193)
T ss_dssp GGGT------CCTTSEEEEEEEESSCCS-CGGGHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHH
T ss_pred CCCC------CCCCCCEEEEEEECCCCC-CCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf 1238------988873589999568767-873689999999868989999996775444444441259999998669871
Q ss_pred CCEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 837882998999999999987587
Q gi|254780388|r 426 NSFFEANSTHELNKIFRDRIGNEI 449 (458)
Q Consensus 426 ~~yy~a~~~~eL~~aF~~~i~~~~ 449 (458)
.++|.+.+-.+|.+.+.+ +.++|
T Consensus 168 ~~~f~v~d~~~L~~i~~~-l~~~I 190 (193)
T d1v7pc_ 168 RYFFNVSDEAALLEKAGT-LGEQI 190 (193)
T ss_dssp HHEEEESSSGGGHHHHHH-HHHHH
T ss_pred CEEEECCCHHHHHHHHHH-HHHHC
T ss_conf 018981899999999999-98651
No 9
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.95 E-value=4.3e-09 Score=73.51 Aligned_cols=136 Identities=15% Similarity=0.132 Sum_probs=90.7
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 6520121100677665565576812100566665641256-777776458899999862366665444456677750699
Q gi|254780388|r 293 DTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN-EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYI 371 (458)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~g~T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~i 371 (458)
...+.+...|+.......++.. ..++..+...+..+. ..|+|+...+|.++.+.+.....+. .++..|++
T Consensus 37 ~~~rvgvv~fs~~~~~~~~l~~---~~~~~~~~~~i~~i~~~~g~t~~~~AL~~~~~~~f~~~~g~------R~~~~kvv 107 (179)
T d1mjna_ 37 TSYQFAAVQFSTSYKTEFDFSD---YVKRKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGA------RPDATKVL 107 (179)
T ss_dssp SSEEEEEEEESSSEEEEECHHH---HHHHCCHHHHHTTCCCCCBCCCHHHHHHHHHHHTSSGGGTC------CTTSEEEE
T ss_pred CCEEEEEEEEEEEEEEEECHHH---CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHCCC------CCCCCEEE
T ss_conf 7528999997423468851143---06368899998633101586349999999999871610188------99997499
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCC---CCEEEECCHHHHHHHHHHHH
Q ss_conf 999606688885408999999998796899999437887431178999860689---83788299899999999998
Q gi|254780388|r 372 VLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASP---NSFFEANSTHELNKIFRDRI 445 (458)
Q Consensus 372 il~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs~---~~yy~a~~~~eL~~aF~~~i 445 (458)
|++|||..+..-. ..+.+|+.+|+|+++...+. ......|+.+||. .++|.+.+-++|.+.+.++.
T Consensus 108 vllTDG~s~d~~~-------~~~~~~i~~~~igvg~~~~~-~~~~~~L~~ias~p~~~~~~~~~~~~~L~~i~~~l~ 176 (179)
T d1mjna_ 108 IIITDGEATDSGN-------IDAAKDIIRYIIGIGKHFQT-KESQETLHKFASKPASEFVKILDTFEKLKDLCTELQ 176 (179)
T ss_dssp EEEESSCCSSCSC-------CGGGTTSEEEEEEESGGGCS-HHHHHTTGGGSCSCHHHHEEEESSGGGSCCHHHHHH
T ss_pred EEEECCCCCCCCH-------HHHHHCCCCCEEEECCCCCC-HHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHH
T ss_conf 9997899865406-------99974174406985244564-004999999857996223997499999999999998
No 10
>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.88 E-value=3.6e-08 Score=67.62 Aligned_cols=132 Identities=11% Similarity=-0.000 Sum_probs=84.1
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHH----------HHHHHHHHHH-HHCCCCCCC
Q ss_conf 43306677766522112346775666520121100677665565576812----------1005666656-412567777
Q gi|254780388|r 268 IKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVH----------KLIRTIVKTF-AIDENEMGS 336 (458)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~-i~~~~~~g~ 336 (458)
.++++..+.++..++.......+. .+.+.+.|++......+.+.... .......... .......+.
T Consensus 23 ~srl~~ak~~~~~~v~~~~~~~~~---d~vglV~f~~~~t~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (236)
T d1jeyb2 23 ESPFEQAKKVITMFVQRQVFAENK---DEIALVLFGTDGTDNPLSGGDQYQNITVHRHLMLPDFDLLEDIESKIQPGSQQ 99 (236)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCC---CEEEEEEESCSSCBSTTCTTTCSTTEEEEEEEECCCHHHHHHHHTTCCCCSSC
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCC---CEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 998999999999999998428999---75999997377765665655663047997413220156777776530246555
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 7645889999986236666544445667775069999960668888540899999999879689999943788
Q gi|254780388|r 337 TAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNK 409 (458)
Q Consensus 337 T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~ 409 (458)
|+...+|..+...+..... ..+...|.|||+|||+++.+......+.+.+|+.||+||+||++...
T Consensus 100 ~~~~~al~~a~~~~~~~~~-------~~~~~~r~IiL~TDG~~~~~~~~~~~~a~~l~~~~I~i~~ig~g~~~ 165 (236)
T d1jeyb2 100 ADFLDALIVSMDVIQHETI-------GKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDISLQFFLPFSLG 165 (236)
T ss_dssp CCHHHHHHHHHHHHHHHSS-------SSCCSEEEEEEECCCCSCCCCTTHHHHHHHHHHTTEEEEEEESSCCC
T ss_pred CCHHHHHHHHHHHHHHHHH-------CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 5504788999988777640-------46656517999936998768378999999998759889999447767
No 11
>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.80 E-value=7.6e-08 Score=65.58 Aligned_cols=112 Identities=12% Similarity=0.116 Sum_probs=69.1
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCH-----HHHHHHHHHHCCCEEEE
Q ss_conf 4125677777645889999986236666544445667775069999960668888540-----89999999987968999
Q gi|254780388|r 328 AIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEE-----GIAICNKAKSQGIRIMT 402 (458)
Q Consensus 328 i~~~~~~g~T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~-----~~~~C~~~K~~gI~Iyt 402 (458)
.....+.|+|++..+|..+.+++.... .....|.|||+|||+++..... ....++.+++.||.||+
T Consensus 99 ~~~~~~~~~t~l~~al~~a~~~~~~~~---------~~~~~k~IiliTDg~~~~~~~~~~~~~~~~~a~~~~~~gv~i~~ 169 (220)
T d1jeya2 99 QDMMGHGSDYSLSEVLWVCANLFSDVQ---------FKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDL 169 (220)
T ss_dssp HHHHCCSCCCCHHHHHHHHHHHHHTCS---------SCEEEEEEEEEESCSCTTTTCHHHHHHHHHHHHHHHHHTEEEEE
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHCC---------CCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEE
T ss_conf 202467888629999999999987401---------34577589998059988888512457799998877630651799
Q ss_pred EEECCCCCCCCH--HHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHH
Q ss_conf 994378874311--7899986068983788299899999999998758
Q gi|254780388|r 403 IAFSVNKTQQEK--ARYFLSNCASPNSFFEANSTHELNKIFRDRIGNE 448 (458)
Q Consensus 403 I~f~~~~~~~~~--~~~~lk~CAs~~~yy~a~~~~eL~~aF~~~i~~~ 448 (458)
|+++.+.+.... .+++++.-..++..++-.+.+.|.+..+++..++
T Consensus 170 i~ig~~~~~d~~~f~~~~l~~~~~~~~~~~~~~~~~l~~l~~~i~~k~ 217 (220)
T d1jeya2 170 MHLKKPGGFDISLFYRDIISIAEDEDLRVHFEESSKLEDLLRKVRAKE 217 (220)
T ss_dssp EEBCCTTCCCTTTTGGGTCC--------CCCCCBCSHHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 983787875511668998721136667610686466999999998751
No 12
>d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.24 E-value=4.9e-05 Score=47.60 Aligned_cols=116 Identities=11% Similarity=0.074 Sum_probs=70.0
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCEEEEEEECCCCCCC----------------
Q ss_conf 05666656412567777764588999998623-6666544445667775069999960668888----------------
Q gi|254780388|r 320 IRTIVKTFAIDENEMGSTAINDAMQTAYDTII-SSNEDEVHRMKNNLEAKKYIVLLTDGENTQD---------------- 382 (458)
Q Consensus 320 ~~~~~~~~i~~~~~~g~T~~~~gl~~g~~~Ls-~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~---------------- 382 (458)
+.......++.+.+.||.+.+++..-|..... ......| ..+..|++||+||.-....
T Consensus 93 d~~~f~~~l~~~~~~GggD~pE~~~~Al~~a~~~~~~i~W-----r~~a~r~viliTDA~~H~~~d~~l~g~~~~~d~~~ 167 (248)
T d1tyeb2 93 QVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGW-----RNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQC 167 (248)
T ss_dssp CHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTC-----CTTSEEEEEEEESSCBCCTTGGGGGTCCSCCCCCC
T ss_pred CHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHCCC-----CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999999985011316889750389999999987630798-----88860899998878755453123323345677755
Q ss_pred ---------------CCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHC--CCCCEEEE--CCHHHHHHHHHH
Q ss_conf ---------------54089999999987968999994378874311789998606--89837882--998999999999
Q gi|254780388|r 383 ---------------NEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCA--SPNSFFEA--NSTHELNKIFRD 443 (458)
Q Consensus 383 ---------------~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CA--s~~~yy~a--~~~~eL~~aF~~ 443 (458)
-.....+++++++++|.++.+ +.. ...+.+++-+ .+|.++.. .+.+.|.+..++
T Consensus 168 ~~~~~~~~~~~~~~dyps~~ql~~~l~~~~i~~ifa---vt~----~~~~~Y~~l~~~~~g~~~~~l~~dssNi~~lI~~ 240 (248)
T d1tyeb2 168 HVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFA---VTE----NVVNLYQNYSELIPGTTVGVLSMDSSNVLQLIVD 240 (248)
T ss_dssp CBCTTSBBGGGGTSCCCCHHHHHHHHHHTTEEEEEE---ECG----GGHHHHHHHHHTSTTCEEEECSSCCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEE---ECC----HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH
T ss_conf 467778535654345788899999999829579999---883----1568999999856985798705534449999999
Q ss_pred HHHH
Q ss_conf 9875
Q gi|254780388|r 444 RIGN 447 (458)
Q Consensus 444 ~i~~ 447 (458)
...+
T Consensus 241 ~y~~ 244 (248)
T d1tyeb2 241 AYGK 244 (248)
T ss_dssp HHHT
T ss_pred HHHH
T ss_conf 9998
No 13
>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=97.81 E-value=0.00038 Score=41.97 Aligned_cols=91 Identities=15% Similarity=0.134 Sum_probs=53.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHH---HCCCEEEEEEEC
Q ss_conf 25677777645889999986236666544445667775069999960668888540899999999---879689999943
Q gi|254780388|r 330 DENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAK---SQGIRIMTIAFS 406 (458)
Q Consensus 330 ~~~~~g~T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~C~~~K---~~gI~IytI~f~ 406 (458)
...+.|+|++..+|.|+.... ...+++|++|||+++.+......+-+..+ ..++++++|++.
T Consensus 75 ~~~~~ggT~i~~al~~a~~~~---------------~~~~~ivllTDg~~~~g~~~~~~~l~~y~~~~~~~~~~~~i~l~ 139 (174)
T d1yvra2 75 SDITMGSTDCALPMLWAQKTN---------------TAADIFIVFTDCETNVEDVHPATALKQYREKMGIPAKLIVCAMT 139 (174)
T ss_dssp TTCCCSCCCTTHHHHHHHHTT---------------CCCSEEEEEECCCCCSSSCCHHHHHHHHHHHHTCCCEEEEEECS
T ss_pred HCCCCCCCCHHHHHHHHHHHH---------------CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 325666630889999998630---------------15787999967875678879899999999870899489999876
Q ss_pred CCCCCCCHHHHHHHHHCCCCCEE---EECCHHHHHHHHH
Q ss_conf 78874311789998606898378---8299899999999
Q gi|254780388|r 407 VNKTQQEKARYFLSNCASPNSFF---EANSTHELNKIFR 442 (458)
Q Consensus 407 ~~~~~~~~~~~~lk~CAs~~~yy---~a~~~~eL~~aF~ 442 (458)
..+.... .--.++... +....-.+.++|.
T Consensus 140 ~~g~~~~-------~~~~~~~~~i~Gfs~~~~~~i~af~ 171 (174)
T d1yvra2 140 SNGFSIA-------DPDDRGMLDICGFDSGALDVIRNFT 171 (174)
T ss_dssp SSSEESS-------CTTCTTEEEEETTCTTHHHHHHHHH
T ss_pred CCCCCCC-------CCCCCCCEEEECCCHHHHHHHHHHH
T ss_conf 8987656-------8899996788457888999999986
No 14
>d2b3ga1 b.40.4.3 (A:3-114) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.58 E-value=5.3 Score=15.45 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=18.1
Q ss_pred CCCCEEEEEEECCCCCCCC-CHHHHHHHHHHH
Q ss_conf 7750699999606688885-408999999998
Q gi|254780388|r 365 LEAKKYIVLLTDGENTQDN-EEGIAICNKAKS 395 (458)
Q Consensus 365 ~~~~K~iil~TDG~n~~~~-~~~~~~C~~~K~ 395 (458)
..++||-++++||.+.... -....+.+..++
T Consensus 35 ~~~~RyR~~lSDG~~~~~~amLatqln~~v~~ 66 (112)
T d2b3ga1 35 NSPPRYRLLMSDGLNTLSSFMLATQLNPLVEE 66 (112)
T ss_dssp -CCCEEEEEEECSSEEEEEEEECGGGHHHHHT
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHC
T ss_conf 98640899997765311012334312556641
No 15
>d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose fungus (Colletotrichum lindemuthianum) [TaxId: 290576]}
Probab=20.37 E-value=12 Score=13.15 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=23.2
Q ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 069999960668888540899999999879689999
Q gi|254780388|r 368 KKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTI 403 (458)
Q Consensus 368 ~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI 403 (458)
...||||-|+...........+.+.+|++|.++.||
T Consensus 171 ~~~IvL~HD~~~~t~~~~l~~ii~~lk~~Gy~fvtl 206 (220)
T d2iw0a1 171 NSYIVLSHDVHEQTVVSLTQKLIDTLKSKGYRAVTV 206 (220)
T ss_dssp CCEEEEECTTSHHHHHTHHHHHHHHHHHTTCEECCH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEH
T ss_conf 987998479964259999999999999879999888
Done!