RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780388|ref|YP_003064801.1| hypothetical protein CLIBASIA_01365 [Candidatus Liberibacter asiaticus str. psy62] (458 letters) >2odp_A Complement C2; C3/C5 convertase, complement serine protease, human complement system, glycoprotein, SP, VWFA, hydrolase; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* (A:1-224) Length = 224 Score = 55.4 bits (132), Expect = 2e-08 Identities = 25/183 (13%), Positives = 62/183 (33%), Gaps = 15/183 (8%) Query: 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRV---ISDPSFSWGVHKLIRTIVKTFAI 329 + +++ + ++ +I + V + F +S + + + + ++ Sbjct: 29 IFKESASLMVD---RIFSFEINVSVAIITFASEPKVLMSVLNDNSRDMTEVISSLENANY 85 Query: 330 DENEMGS-TAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQD------ 382 ++E G+ T A+ + Y + + E + I+LLTDG++ Sbjct: 86 KDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTA 145 Query: 383 --NEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHELNKI 440 + I N+ ++ + I I + S F T L+++ Sbjct: 146 VDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQDTKALHQV 205 Query: 441 FRD 443 F Sbjct: 206 FEH 208 >1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} (B:1-236,B:463-505) Length = 279 Score = 54.2 bits (129), Expect = 3e-08 Identities = 23/180 (12%), Positives = 46/180 (25%), Gaps = 21/180 (11%) Query: 277 ALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENE--- 333 A + +++ + + F +P ++ I D + Sbjct: 34 AKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLMLPDFDLLED 93 Query: 334 --------MGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEE 385 DA+ + D I H K++I + TD + + Sbjct: 94 IESKIQPGSQQADFLDALIVSMDVIQ-------HETIGKKFEKRHIEIFTDLSSRFSKSQ 146 Query: 386 GIAICNKAKSQGIRIMTIAF-SVNKTQQEKARYFLSNCASPN--SFFEANSTHELNKIFR 442 I + K I + S+ K R + SF T + + Sbjct: 147 LDIIIHSLKKCDISLQFFLPFSLGKEDGSGDRGDGPFRLGGHGPSFPLKGITEQQKEGLE 206 >2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} (A:221-279,A:318-447,A:506-585) Length = 269 Score = 49.1 bits (116), Expect = 1e-06 Identities = 26/197 (13%), Positives = 44/197 (22%), Gaps = 25/197 (12%) Query: 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN 332 +A S+I I R+ + + I +K E Sbjct: 30 RAGEATRSLIDKITSDSEN----RVALVTYASTIDYSYLKLTNDKNDIVE-LKNKVPTEA 84 Query: 333 EM----------GSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQD 382 E G+T A+ A E+ + ++K I +TDG T Sbjct: 85 EDHDGNRLMYQFGATFTQKALMKAD---------EILTQQARQNSQKVIFHITDGVPTMS 135 Query: 383 NEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHEL-NKIF 441 A S ++ F++ S N Sbjct: 136 YPINFNHATFAPSYQNQLNAFFSKSPNKDGILLSDFITQATSGEHTIVRGDGQSNSNTAK 195 Query: 442 RDRIGNEIFERVIRITK 458 G+ Sbjct: 196 ITNHGDPTRWYYNGNIA 212 Score = 46.4 bits (109), Expect = 8e-06 Identities = 10/78 (12%), Positives = 22/78 (28%), Gaps = 6/78 (7%) Query: 375 TDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVN---KTQQEKARYFLSNCASPNSFFEA 431 T + G + T+ +N T + A F+ + +S + Sbjct: 193 TAKITNHGDPTRWYYNGNIAPDGYDVFTVGIGINGDPGTDEATATSFMQSISSKPENY-- 250 Query: 432 NSTHELNKIFRDRIGNEI 449 + + KI + Sbjct: 251 TNVTDTTKILEQ-LNRYF 267 >3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement system, convertase, complement alternate pathway, complement pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 3hs0_D* 2ok5_A* (D:199-457) Length = 259 Score = 48.8 bits (115), Expect = 1e-06 Identities = 23/190 (12%), Positives = 51/190 (26%), Gaps = 21/190 (11%) Query: 277 ALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHK----LIRTIVKTFAIDEN 332 A ++ I+K+ + R G + S + + + + D Sbjct: 66 AKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHK 125 Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICN- 391 T A+Q Y + ++ + I+L+TDG + + I Sbjct: 126 LKSGTNTKKALQAVYSMMSWPDDVPPEGWNR---TRHVIILMTDGLHNMGGDPITVIDEI 182 Query: 392 -----------KAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHELNKI 440 + + + Q S + F+ L + Sbjct: 183 RDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVN-INALASKKDNEQHVFKVKDMENLEDV 241 Query: 441 FRDRIGNEIF 450 F ++ +E Sbjct: 242 F-YQMIDESQ 250 >1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} (A:1-252) Length = 252 Score = 46.6 bits (109), Expect = 7e-06 Identities = 13/204 (6%), Positives = 43/204 (21%), Gaps = 39/204 (19%) Query: 277 ALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGV-------------HKLIRTI 323 ++ + +D + F+ + + + Sbjct: 63 SIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELDQF 122 Query: 324 VKTFAID-----ENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGE 378 ++++ + + + K I+L T+ + Sbjct: 123 KGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKM---------SHKRIMLFTNED 173 Query: 379 NT-----QDNEEGIAICNKAKSQGIRIMTIAF--SVNKTQQEKARYFLSNCASPNSFFEA 431 N + GI + + R +S + Sbjct: 174 NPHGNDSAKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISIAEDEDLRVHF 233 Query: 432 NSTHELNKIFRDRIGNEIFERVIR 455 + +L + ++ + R Sbjct: 234 EESSKLEDLL-----RKVRAKETR 252 >3k6s_A Integrin alpha-X; hetero dimer, cell receptor, adhesion molecule, calcium, cell adhesion, disulfide bond, glycoprotein, magnesium, membrane; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* (A:125-315) Length = 191 Score = 45.0 bits (105), Expect = 2e-05 Identities = 25/174 (14%), Positives = 57/174 (32%), Gaps = 17/174 (9%) Query: 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN 332 + + + +VI + + + F+++ + F++ + + A Sbjct: 26 TMMNFVRAVISQFQ-----RPSTQFSLMQFSNKFQTH--FTFEEFRRSSNPLSLLASVHQ 78 Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNK 392 G T A+Q + +A K ++++TDG+ D+ + + Sbjct: 79 LQGFTYTATAIQNVVHRLFH------ASYGARRDAAKILIVITDGKKEGDSLDYKDVIPM 132 Query: 393 AKSQGIRIMTIAFSVNKTQQEKARYFLSNCAS---PNSFFEANSTHELNKIFRD 443 A + GI I + + L++ AS F+ L I Sbjct: 133 ADAAGIIRYAIGVGLAFQ-NRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQ 185 >1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} (A:) Length = 223 Score = 42.6 bits (99), Expect = 9e-05 Identities = 24/206 (11%), Positives = 55/206 (26%), Gaps = 26/206 (12%) Query: 261 SSSLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFS----WGV 316 S S+ + +L ++I K+ + R G + S Sbjct: 25 SDSIGA--SNFTGAKKSLVNLIE---KVASYGVKPRYGLVTYATYPKIWVKVSEADSSNA 79 Query: 317 HKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTD 376 + + + + D T A+Q Y + ++ + + I+L+TD Sbjct: 80 DWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDV---PPEGWNRTRHVIILMTD 136 Query: 377 GENTQDNE------------EGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCAS 424 G + + + + + Q S + Sbjct: 137 GLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVN-INALASKKDN 195 Query: 425 PNSFFEANSTHELNKIFRDRIGNEIF 450 F+ L +F ++ +E Sbjct: 196 EQHVFKVKDMENLEDVF-YQMIDESQ 220 >1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} (A:365-538) Length = 174 Score = 41.0 bits (95), Expect = 3e-04 Identities = 19/153 (12%), Positives = 38/153 (24%), Gaps = 32/153 (20%) Query: 259 VDSS---SLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWG 315 +D S + R + + A A + F+D ++ P Sbjct: 11 IDVSASMNQRVLGSILNASVVAAAMCM------LVARTEKDSHMVAFSDEMLPCPITVNM 64 Query: 316 VHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLT 375 + + + + MGST M A A ++ T Sbjct: 65 LLHEVVE-----KMSDITMGSTDCALPMLWAQK---------------TNTAADIFIVFT 104 Query: 376 DGENT---QDNEEGIAICNKAKSQGIRIMTIAF 405 D E + + +++ A Sbjct: 105 DCETNVEDVHPATALKQYREKMGIPAKLIVCAM 137 >1dfa_A PI-SCEI endonuclease; intein, homing endonuclease, hydrolase; 2.00A {Saccharomyces cerevisiae} (A:194-405) Length = 212 Score = 28.6 bits (63), Expect = 1.8 Identities = 5/59 (8%), Positives = 21/59 (35%), Gaps = 1/59 (1%) Query: 122 MNPRKSAYQVVLSSRYDLLLNPLSLFLRSMGIKSWLIQTKAEAETVSRSYHKEHGVSIQ 180 + + + + + + + L RS+G+ + A+ + + + + + Sbjct: 136 VTDEHG-IKATIKTIHTSVRDGLVSLARSLGLVVSVNAEPAKVDMNGTKHKISYAIYMS 193 >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genomics, NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus VF5} PDB: 2z95_A* (A:1-178) Length = 178 Score = 26.8 bits (57), Expect = 6.4 Identities = 4/29 (13%), Positives = 10/29 (34%) Query: 155 SWLIQTKAEAETVSRSYHKEHGVSIQWVI 183 S K ++ +Y + + + I Sbjct: 149 SPYAVAKLFGHWITVNYREAYNMFACSGI 177 >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} (A:1-189) Length = 189 Score = 26.5 bits (56), Expect = 6.6 Identities = 4/28 (14%), Positives = 9/28 (32%) Query: 155 SWLIQTKAEAETVSRSYHKEHGVSIQWV 182 S K ++ +Y + G+ Sbjct: 160 SPYGVAKLYGHWITVNYRESFGLHASSG 187 >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} (A:1-207) Length = 207 Score = 26.5 bits (56), Expect = 7.2 Identities = 3/28 (10%), Positives = 9/28 (32%) Query: 155 SWLIQTKAEAETVSRSYHKEHGVSIQWV 182 S K A + ++ + + + Sbjct: 178 SPYGAAKLYAYWIVVNFREAYNLFAVNG 205 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.319 0.133 0.378 Gapped Lambda K H 0.267 0.0438 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 3,306,083 Number of extensions: 144715 Number of successful extensions: 336 Number of sequences better than 10.0: 1 Number of HSP's gapped: 336 Number of HSP's successfully gapped: 19 Length of query: 458 Length of database: 4,956,049 Length adjustment: 91 Effective length of query: 367 Effective length of database: 1,879,794 Effective search space: 689884398 Effective search space used: 689884398 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 56 (26.1 bits)