RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780388|ref|YP_003064801.1| hypothetical protein
CLIBASIA_01365 [Candidatus Liberibacter asiaticus str. psy62]
(458 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 60.3 bits (146), Expect = 8e-10
Identities = 75/476 (15%), Positives = 113/476 (23%), Gaps = 239/476 (50%)
Query: 42 DVVRWSYYEHALKQAAQTAIITASVPLIQS--LEEVSSRAKNSFT-FPKQ-KIEEYLIRN 97
++++ +Y A+ S V F Q ++Y
Sbjct: 121 ELIK-NYI------TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY---- 169
Query: 98 FENNLKKNFTDREVRDIVRDTAVEMNPRKSAYQVVLSSRYDL------LLNPLS------ 145
FE E+RD+ T Y V++ DL L+ L
Sbjct: 170 FE----------ELRDLY-QT----------YHVLVG---DLIKFSAETLSELIRTTLDA 205
Query: 146 --LFLRSMGIKSWLIQTKAEAE---------TVS-------------------------- 168
+F + + I WL +S
Sbjct: 206 EKVFTQGLNILEWL--ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 169 RSY------HKEHGV--------SIQW---------VID--F---SRSMLDYQR------ 194
RSY H + G+ + W I F R Y
Sbjct: 264 RSYLKGATGHSQ-GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322
Query: 195 ---DS----EGQPLNCFGQPADRTVKSY--SSQNGKVGIRD---EKLSPYMVSCNKSLYY 242
DS EG P S S I + E++ Y+ N L
Sbjct: 323 ILEDSLENNEGVP-------------SPMLS-------ISNLTQEQVQDYVNKTNSHL-- 360
Query: 243 MLYPGPLDP----SL--SEEHFVDS---SSLRHVIKKKHLVRDALASVIRSIKKIDNVND 293
P SL ++ V S SL L +R K + D
Sbjct: 361 -----PAGKQVEISLVNGAKNLVVSGPPQSLYG-----------LNLTLRKAKAPSGL-D 403
Query: 294 TVRMGATFFNDR---------VISDPSF-SWGVHKLIRT---IVKTFAIDENEMGSTAIN 340
R+ F++R ++ P F S H L+ I K + +
Sbjct: 404 QSRIP---FSERKLKFSNRFLPVASP-FHS---HLLVPASDLINKDLVKNNVSFNA---K 453
Query: 341 DAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGI------AIC 390
D YDT DG + + I I
Sbjct: 454 DIQIPVYDT-------------------------FDGSDLRVLSGSISERIVDCII 484
Score = 40.7 bits (95), Expect = 6e-04
Identities = 52/329 (15%), Positives = 96/329 (29%), Gaps = 140/329 (42%)
Query: 14 LIKSCTGHF-FIITALLMPVMLGVGGMLVDVVRW-SYYEHALK-------------QAAQ 58
+K TGH ++TA+ + D W S++ K +A
Sbjct: 266 YLKGATGHSQGLVTAVAIAE--------TD--SWESFFVSVRKAITVLFFIGVRCYEAYP 315
Query: 59 TAIITASVPLIQSLEE----------VS--SRAK--------NSFTFPK-QKIEEYLIRN 97
+ S+ L SLE +S ++ + NS P +++E L+
Sbjct: 316 NTSLPPSI-LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH-LPAGKQVEISLV-- 371
Query: 98 FENNLKKNFT-----------DREVRDIVRDTAVEMN--P---RKSAYQVVLSSRY---- 137
N KN + +R + ++ + P RK + S+R+
Sbjct: 372 ---NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK----LKFSNRFLPVA 424
Query: 138 -----DLLLNPLSLFLRSMGIKSWLIQTKAEAETVSRSYH-------KEHGVSI------ 179
LL+ L + + + K V Y + SI
Sbjct: 425 SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV---YDTFDGSDLRVLSGSISERIVD 481
Query: 180 -------QW--VIDFSRS-MLDYQRDSEGQPLNCFGQPADRTVKSYSSQN--GKVGIRDE 227
+W F + +LD FG + + +N G G+R
Sbjct: 482 CIIRLPVKWETTTQFKATHILD------------FGPGGASGLGVLTHRNKDGT-GVR-- 526
Query: 228 KLSPYMVSCNKSLYYMLYPGPLDPSLSEE 256
++ G LD + ++
Sbjct: 527 ---------------VIVAGTLDINPDDD 540
Score = 40.7 bits (95), Expect = 8e-04
Identities = 53/361 (14%), Positives = 101/361 (27%), Gaps = 143/361 (39%)
Query: 169 RSYHKEHGVSIQWVIDFSRSMLDYQRDSEGQPLNCFGQPADRTVKSYSSQNGKVGIRDEK 228
R HG S++ V+ + L ++ K DE
Sbjct: 7 RPLTLSHG-SLEHVLLVPTASF-----FIASQLQ------EQFNKILPEPTEGFAADDEP 54
Query: 229 LSPYMVS-CNKSLYYMLY------PGPLDPSLS------EEHFVDSSSLRHVI------- 268
+P K L Y+ G D L+ E +++ + + H +
Sbjct: 55 TTP--AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-HALAAKLLQE 111
Query: 269 ------KKKHLVRDALASVIRSIKKIDNV----------NDTVRMGATF---------FN 303
K K L+++ + + I + + D ++ A F F
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE 171
Query: 304 D-RVISD--PSFSWGVHKLIRTIVKTFAIDENEMGSTAIN---------DAMQ------- 344
+ R + V LI+ +T +E+ T ++ + ++
Sbjct: 172 ELRDLYQTYHVL---VGDLIKFSAETL----SELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 345 ---TAYDTIISSNEDEV-----------HRMKNNLEAKKYIVL-----LTDGENTQDNEE 385
Y ++S + H Y+V T GE + +
Sbjct: 225 TPDKDY--LLSI---PISCPLIGVIQLAH----------YVVTAKLLGFTPGE-LRSYLK 268
Query: 386 GIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDRI 445
G SQG+ + +A + S SFF + + +F I
Sbjct: 269 GAT----GHSQGL-VTAVAIAE--------------TDSWESFFV-SVRKAITVLF--FI 306
Query: 446 G 446
G
Sbjct: 307 G 307
>2odp_A Complement C2; C3/C5 convertase, complement serine protease, human
complement system, glycoprotein, SP, VWFA, hydrolase;
HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A*
2i6s_A*
Length = 509
Score = 58.0 bits (139), Expect = 4e-09
Identities = 27/188 (14%), Positives = 54/188 (28%), Gaps = 12/188 (6%)
Query: 277 ALASVIRSIKKIDNVNDTVRMGATFFNDRVIS----DPSFSWGVHKLIRTIVKTFAIDEN 332
S + +I + V + F S + ++I ++ D
Sbjct: 30 FKESASLMVDRIFSFEINVSVAIITFASEPKVLMSVLNDNSRDMTEVISSLENANYKDHE 89
Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGEN--------TQDNE 384
T A+ + Y + + E + I+LLTDG++ D+
Sbjct: 90 NGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHI 149
Query: 385 EGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDR 444
I N+ ++ + I I + S F T L+++F
Sbjct: 150 REILNINQKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHM 209
Query: 445 IGNEIFER 452
+
Sbjct: 210 LDVSKLTD 217
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement system, convertase, complement alternate
pathway, complement pathway; HET: NAG P6G; 2.20A {Homo
sapiens} PDB: 3hs0_D* 2ok5_A*
Length = 741
Score = 57.2 bits (137), Expect = 7e-09
Identities = 24/198 (12%), Positives = 52/198 (26%), Gaps = 24/198 (12%)
Query: 275 RDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHK----LIRTIVKTFAID 330
A ++ I+K+ + R G + S + + + + D
Sbjct: 262 TGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYED 321
Query: 331 ENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAIC 390
T A+Q Y + ++ + + I+L+TDG + + I
Sbjct: 322 HKLKSGTNTKKALQAVYSMMSWPDD---VPPEGWNRTRHVIILMTDGLHNMGGDPITVID 378
Query: 391 ------------NKAKSQGIRIMTIAFS--VNKTQQEKARYFLSNCASPNSFFEANSTHE 436
+ + + VN+ S + F+
Sbjct: 379 EIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINA---LASKKDNEQHVFKVKDMEN 435
Query: 437 LNKIFRDRIGNEIFERVI 454
L +F I +
Sbjct: 436 LEDVFYQMIDESQSLSLC 453
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A
{Homo sapiens} SCOP: c.62.1.1
Length = 198
Score = 56.8 bits (136), Expect = 1e-08
Identities = 26/181 (14%), Positives = 63/181 (34%), Gaps = 16/181 (8%)
Query: 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN 332
+ + + +VI + + + F+++ + +F + + A
Sbjct: 29 TMMNFVRAVISQFQ-----RPSTQFSLMQFSNKFQTHFTFEE--FRRSSNPLSLLASVHQ 81
Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNK 392
G T A+Q + ++ +A K ++++TDG+ D+ + +
Sbjct: 82 LQGFTYTATAIQNVVHRLFHASYG------ARRDAAKILIVITDGKKEGDSLDYKDVIPM 135
Query: 393 AKSQGIRIMTIAF--SVNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDRIGNEIF 450
A + GI I + K +++ S F+ L I +++ +IF
Sbjct: 136 ADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQ-NQLKEKIF 194
Query: 451 E 451
Sbjct: 195 A 195
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP:
c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 1n9z_A 1bhq_1
1bho_1 1idn_1
Length = 194
Score = 54.9 bits (131), Expect = 4e-08
Identities = 25/180 (13%), Positives = 65/180 (36%), Gaps = 16/180 (8%)
Query: 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN 332
+++ +++V+ +KK + ++ F + + L++ I
Sbjct: 25 RMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFKEFQNNPNPRSLVKPI-------TQ 77
Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNK 392
+G T ++ + + A K +V++TDGE D + +
Sbjct: 78 LLGRTHTATGIRKVVRELFNI------TNGARKNAFKILVVITDGEKFGDPLGYEDVIPE 131
Query: 393 AKSQGIRIMTIAF--SVNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDRIGNEIF 450
A +G+ I + + + +++ + F+ N+ L I +++ +IF
Sbjct: 132 ADREGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQ-NQLREKIF 190
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting;
1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A
1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A
1u0o_C
Length = 202
Score = 52.2 bits (124), Expect = 2e-07
Identities = 20/198 (10%), Positives = 58/198 (29%), Gaps = 25/198 (12%)
Query: 259 VDSS-SLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVH 317
+D S L + +++ + ++ +++ VR+ ++D +
Sbjct: 20 LDGSSRLSE--AEFEVLKAFVVDMM---ERLRVSQKWVRVAVVEYHDGSHAYIGLKDRKR 74
Query: 318 KLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDG 377
+ + + + + T+ + ++L+
Sbjct: 75 PSELRR----IASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASR----IALLLMASQ 126
Query: 378 ENTQDNEEGIAICNKAKSQGIRIMTIAF--SVNKTQQEKARYFLSNCASPNSFFEANSTH 435
E + + + K + + ++ + N Q + A N F +S
Sbjct: 127 EPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRL----IEKQAPENKAFVLSSVD 182
Query: 436 ELNKIFRDRIGNEIFERV 453
EL + +EI +
Sbjct: 183 ELEQQR-----DEIVSYL 195
>1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo
sapiens} SCOP: c.62.1.1 PDB: 1qcy_A 1qc5_A 1qc5_B 1ck4_A
1mhp_A
Length = 213
Score = 47.9 bits (113), Expect = 5e-06
Identities = 38/199 (19%), Positives = 71/199 (35%), Gaps = 22/199 (11%)
Query: 259 VDSSSLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHK 318
+D S+ I V L ++ K++D ++G + + V + + +
Sbjct: 14 LDGSN---SIYPWDSVTAFLNDLL---KRMDIGPKQTQVGIVQYGENVTHEFNLNKYSST 67
Query: 319 LIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGE 378
V A + G A+ T + E R KK +V++TDGE
Sbjct: 68 ---EEVLVAAKKIVQRGGRQTMTALGTDTARKEAFTEARGARR----GVKKVMVIVTDGE 120
Query: 379 NTQDNEEGIAICNKAKSQGIRIMTI----AFSVNKTQQEKARYFLSNCASPNS---FFEA 431
+ DN + + + I+ +I +++ EK + + AS + FF
Sbjct: 121 S-HDNHRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNV 179
Query: 432 NSTHELNKIFRDRIGNEIF 450
+ L I +G IF
Sbjct: 180 SDELALVTIV-KTLGERIF 197
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A
domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Length = 223
Score = 47.6 bits (112), Expect = 6e-06
Identities = 25/185 (13%), Positives = 48/185 (25%), Gaps = 20/185 (10%)
Query: 277 ALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFA----IDEN 332
A S++ I+K+ + R G + S + K D
Sbjct: 36 AKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHK 95
Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENT------------ 380
T A+Q Y + ++ + + I+L+TDG +
Sbjct: 96 LKSGTNTKKALQAVYSMMSWPDD---VPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEI 152
Query: 381 QDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHELNKI 440
+D + + + Q S + F+ L +
Sbjct: 153 RDLLYIGKDRKNPREDYLDVYVFGVGPL-VNQVNINALASKKDNEQHVFKVKDMENLEDV 211
Query: 441 FRDRI 445
F I
Sbjct: 212 FYQMI 216
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Length = 497
Score = 46.8 bits (110), Expect = 9e-06
Identities = 21/200 (10%), Positives = 49/200 (24%), Gaps = 23/200 (11%)
Query: 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVIS----DPSFSWGVHKLIRTIVKTFA 328
+ L ++I + R G + + S + + + +
Sbjct: 21 GAKKVLVNLIEKVASYG---VKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINY 77
Query: 329 IDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIA 388
D T A+Q Y + ++ + + I+L+TDG + +
Sbjct: 78 EDHKLKSGTNTKKALQAVYSMMSWPDD---VPPEGWNRTRHVIILMTDGLHNMGGDPITV 134
Query: 389 I------------CNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHE 436
I + + + Q S + +
Sbjct: 135 IDEIRDLLYIGKDRKNPREDYLDVYVFGVG-PLVNQVNINALASKKDNEQHVCKVKDMEC 193
Query: 437 LNKIFRDRIGNEIFERVIRI 456
L +F I + +
Sbjct: 194 LEDVFYQMIDESQSLSLCGM 213
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A
{Toxoplasma gondii}
Length = 178
Score = 44.4 bits (104), Expect = 5e-05
Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 10/133 (7%)
Query: 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN 332
LV+ L + + + + V ++ V +
Sbjct: 37 LVKQFLHTFL---MVLPIGPEEVNNAVVTYSTDVHLQWDLQSPNAVDKQLAAHAVLDMPY 93
Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNK 392
+ GST +D ++ + + K ++ +TDGE+ D A +
Sbjct: 94 KKGSTNTSDGLKACKQILFT------GSRPGREHVPKLVIGMTDGESDSDFRTVRAA-KE 146
Query: 393 AKSQGIRIMTIAF 405
+ G + +A
Sbjct: 147 IRELGGIVTVLAV 159
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON
willebrand factor A domain, beta- sheet, RNA binding
protein; 1.89A {Deinococcus radiodurans}
Length = 535
Score = 40.3 bits (94), Expect = 9e-04
Identities = 6/84 (7%), Positives = 16/84 (19%), Gaps = 18/84 (21%)
Query: 328 AIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDN---E 384
G T + V+ TD E
Sbjct: 432 KAQSVSFGGTDCAQPIL---------------WAAQERLDVDTFVVYTDNETWAGQVHPT 476
Query: 385 EGIAICNKAKSQGIRIMTIAFSVN 408
+ + + +++ + +
Sbjct: 477 VALDQYAQKMGRAPKLIVVGLTAT 500
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll
biosynthesis, photosynthesis; 7.50A {Rhodobacter
capsulatus}
Length = 189
Score = 37.4 bits (86), Expect = 0.008
Identities = 16/154 (10%), Positives = 36/154 (23%), Gaps = 28/154 (18%)
Query: 269 KKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFA 328
+ + A+ ++ + F + ++
Sbjct: 21 ARLSEAKGAVELLLG-----RAYAARDHVSLITFRGTAAQVLLQPSRSLTQTKRQLQGLP 75
Query: 329 IDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENT-------- 380
G T + M+ A T + I LLTDG
Sbjct: 76 GG----GGTPLASGMEMAMVTAKQARSRG---------MTPTIALLTDGRGNIALDGTAN 122
Query: 381 --QDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQ 412
E+ + ++ G+ + I ++
Sbjct: 123 RELAGEQATKVARAIRASGMPAVIIDTAMRPNPA 156
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Escherichia
coli} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I
1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A*
1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A*
2o7n_A* 3f78_A* ...
Length = 179
Score = 36.5 bits (83), Expect = 0.012
Identities = 21/179 (11%), Positives = 57/179 (31%), Gaps = 23/179 (12%)
Query: 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN 332
+ D + V++ N + + A F+ ++ FS V + + ++
Sbjct: 22 KILDFMKDVMKKCS-----NTSYQFAAVQFSTSYKTEFDFSDYVKR--KDPDALLKHVKH 74
Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNK 392
+ T A+ + +A K ++++TDGE T
Sbjct: 75 MLLLTNTFGAINYVATEVFREELG------ARPDATKVLIIITDGEATDSGNI------- 121
Query: 393 AKSQGIRIMTIAFS--VNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDRIGNEI 449
++ I I + ++ + ++ + ++ +L + + +I
Sbjct: 122 DAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDLC-TELQKKI 179
>3gxb_A VON willebrand factor; VWA-like fold, blood coagulation, cell
adhesion, cleavage on PAIR of basic residues, disease
mutation, disulfide bond; HET: NAG; 1.90A {Homo sapiens}
Length = 184
Score = 36.0 bits (82), Expect = 0.019
Identities = 17/173 (9%), Positives = 49/173 (28%), Gaps = 23/173 (13%)
Query: 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN 332
++ + VI+ + + + V + + V S + +++ + + N
Sbjct: 22 RSKEFMEEVIQRMD-VGQDSIHVTVLQYSYMVTVEYPFSEAQSKGDILQRVREIRYQGGN 80
Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNK 392
A++ D + +A + ++T + + I
Sbjct: 81 RT---NTGLALRYLSDHSFLV------SQGDREQAPNLVYMVTGNPASDE------IKRL 125
Query: 393 AKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDRI 445
+ + + + N + L PN+ L + D +
Sbjct: 126 PGDIQVVPIGVGPNANVQE-------LERIGWPNAPILIQDFETLPREAPDLV 171
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining,
protein/nucleic acid complex, alpha/beta domain, beta
barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2
c.62.1.4 PDB: 1jeq_B*
Length = 565
Score = 33.9 bits (77), Expect = 0.078
Identities = 14/97 (14%), Positives = 26/97 (26%), Gaps = 10/97 (10%)
Query: 318 KLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDG 377
L+ I + DA+ + D I H K++I + TD
Sbjct: 89 DLLEDIESKIQPGSQQ---ADFLDALIVSMDVIQ-------HETIGKKFEKRHIEIFTDL 138
Query: 378 ENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEK 414
+ + I + K I + +
Sbjct: 139 SSRFSKSQLDIIIHSLKKCDISLQFFLPFSLGKEDGS 175
>2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding
channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P
Length = 674
Score = 32.8 bits (74), Expect = 0.18
Identities = 15/107 (14%), Positives = 41/107 (38%), Gaps = 15/107 (14%)
Query: 40 LVDVVRWSYYEHALKQAAQTAIITASVPLIQSLEEVSSRAKNSFTF-----PKQKIEEYL 94
+V+ +RW +++ + I + ++V ++ ++ +E
Sbjct: 5 VVNDLRWDLSAQQIEERTRELIEQTK----RVYDQVGTQEFEDVSYESTLKALADVEVTY 60
Query: 95 --IRNFENNLKKNFTDREVRDIVRDTAVEMNPRKSAYQVVLSSRYDL 139
RN + + +++R + E + + S + V +S R D+
Sbjct: 61 TVQRNILDFPQHVSPSKDIRTA----STEADKKLSEFDVEMSMREDV 103
>1h12_A Endo-1,4-beta-xylanase; hydrolase, xylan degradation,
psychrophilic, cold adaptation, temperature, glycosyl
hydrolase, family 8; HET: XYP XYS; 1.2A
{Pseudoalteromonas haloplanktis} SCOP: a.102.1.2 PDB:
1h13_A 1xw2_A 1xwq_A* 1h14_A 1xwt_A 2b4f_A* 2a8z_A*
Length = 405
Score = 32.0 bits (72), Expect = 0.29
Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 15/108 (13%)
Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRM---KNNLEAKKYIVLLTDGENTQDNEEGIAI 389
EMG T I + + +D + N + +N + YI + E EG
Sbjct: 23 EMGKTNIQQKVNSTFDNMFGYNNTQQLYYPYTENGVYKAHYIKAINPDEGDDIRTEG--- 79
Query: 390 CNKAKSQGIRIMTIAFSVNKTQQEKA--RYFLSNCASPNSFFEANSTH 435
+S G MT A +NK ++ R+ + +P++ +A
Sbjct: 80 ----QSWG---MTAAVMLNKQEEFDNLWRFAKAYQKNPDNHPDAKKQG 120
>2jow_A Protein PRGI; needle protein, transport protein; NMR {Salmonella
typhimurium}
Length = 83
Score = 31.4 bits (71), Expect = 0.38
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 46 WSYYEHALKQAAQTAIITASVPLIQSLEEVSSRAKNSFTFPK--QKIEEY-LIRNFENNL 102
WS Y + T + + ++L++++++ + K+ EY L RN ++N
Sbjct: 5 WSGYLDDVSAKFDTGVDNLQTQVTEALDKLAAKPSDPALLAAYQSKLSEYNLYRNAQSNT 64
Query: 103 KKNFTD 108
K F D
Sbjct: 65 VKVFKD 70
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat
repeat, VON willebrand factor A, rossmann fold, midas
motif', RNA binding protein; 1.95A {Xenopus laevis}
SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Length = 538
Score = 31.1 bits (70), Expect = 0.56
Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 24/123 (19%)
Query: 261 SSSLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLI 320
S+S+ + L +A+ + + + + F+D ++ P V+ L+
Sbjct: 378 SASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVA----FSDEMLPCP---ITVNMLL 430
Query: 321 RTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENT 380
+V+ + + MGST M A A ++ TD E
Sbjct: 431 HEVVE--KMSDITMGSTDCALPMLWAQK---------------TNTAADIFIVFTDCETN 473
Query: 381 QDN 383
++
Sbjct: 474 VED 476
>2o3e_A Neurolysin; thermolysin-like domain, substrate-binding channel,
hydrolase; 2.20A {Rattus norvegicus} PDB: 1i1i_P
Length = 678
Score = 30.1 bits (67), Expect = 0.99
Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 15/104 (14%)
Query: 43 VVRWSYYEHALKQAAQTAIITASVPLIQSLEEVSSRAKNSFTF-----PKQKIEEYLIRN 97
V+RW +K + I Q + V + A T+ IE I
Sbjct: 24 VLRWDLSPEQIKTRTEQLIAQTK----QVYDTVGTIALKEVTYENCLQVLADIEVTYIVE 79
Query: 98 FE--NNLKKNFTDREVRDIVRDTAVEMNPRKSAYQVVLSSRYDL 139
+ + +DREVR + E + + S + + +S R D+
Sbjct: 80 RTMLDFPQHVSSDREVRAA----STEADKKLSRFDIEMSMREDV 119
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas,
admidas, membrane, integrin, titration, rossman fold,
cell adhesion, transmembrane; NMR {Mus musculus}
Length = 212
Score = 29.7 bits (66), Expect = 1.4
Identities = 13/118 (11%), Positives = 37/118 (31%), Gaps = 15/118 (12%)
Query: 261 SSSLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLI 320
S S + + V+ + +++++ +I + R+G +
Sbjct: 13 SGSAQGHLSN---VQTLGSDLLKALNEISR---SGRIGFGSIVNMTFQHILKLTADSSQF 66
Query: 321 RTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGE 378
+ ++ + DA+ + R +++VL+TD +
Sbjct: 67 QRELRKQLVSGKLATPKGQLDAVVQV----AICLGEIGWR-----NGTRFLVLVTDND 115
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate
dehydrogenase; oxidoreductase; 1.82A {Streptococcus
mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A*
2qe0_A* 2esd_A* 1qi1_A*
Length = 475
Score = 29.0 bits (64), Expect = 2.0
Identities = 13/106 (12%), Positives = 36/106 (33%), Gaps = 11/106 (10%)
Query: 265 RHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIV 324
+ + L+ DA ++ +I + + F+ + I+
Sbjct: 329 KSADYVEGLINDANDKGATALTEIKR--EGNLICPILFDKVTTDMRLAWEEPFGPVLPII 386
Query: 325 KTFAIDENEMGSTAINDAMQTAY---DTIISSNEDEVHRMKNNLEA 367
+ +++E AI + ++ Y +I +++ + LE
Sbjct: 387 RVTSVEE------AIEISNKSEYGLQASIFTNDFPRAFGIAEQLEV 426
>2i6e_A Hypothetical protein; NYSGXRC,10093B, structural genomics, PSI-2,
protein structure initiative; 2.50A {Deinococcus
radiodurans} SCOP: c.94.1.1
Length = 301
Score = 28.0 bits (62), Expect = 4.8
Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 17/102 (16%)
Query: 25 ITALLMPVMLGVGGMLVDVVRWSYYEHALKQAAQTAIITASVPLIQSLEEVSSRAKNSFT 84
+T + + + AL QA + A I L EVS R
Sbjct: 197 LTGHPFTFAVWA------YRKDNPPPAALLQAMREARRRG----IGHLAEVSQRHAEKLG 246
Query: 85 FPKQKIEEYLIRNFENNLKKNFTDREVRDIVR--DTAVEMNP 124
P++ ++ YL N + + + + D AV +
Sbjct: 247 LPERVVQHYL-----WNFRYHLEAPDRLGLREFADLAVPGHA 283
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 27.9 bits (61), Expect = 5.4
Identities = 19/188 (10%), Positives = 53/188 (28%), Gaps = 10/188 (5%)
Query: 270 KKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAI 329
+ L S+ + + R + ++ P + + +
Sbjct: 185 RGFLEGTLAESLFAGSNEASKALTSARFVLSDKLPEHVTMPDGDFSIRSWLEDPNGGNLF 244
Query: 330 -----DENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNE 384
D I+ + +I+S E+ R+ ++ + L +
Sbjct: 245 ITWREDMGPALRPLISAWVDVVCTSILSLPEEPKRRLWLFIDELASLEKLASLADALTKG 304
Query: 385 EGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDR 444
+ A Q + + + ++A+ ++ S + + + N+
Sbjct: 305 RKAGLRVVAGLQ-----STSQLDDVYGVKEAQTLRASFRSLVVLGGSRTDPKTNEDMSLS 359
Query: 445 IGNEIFER 452
+G ER
Sbjct: 360 LGEHEVER 367
>2vdr_B Integrin beta-3; cell adhesion/immune system, alternative splicing,
platelet integrin ALPHAIIBBETA3, polymorphism,
glycoprotein, cell adhesion, calcium; HET: NAG MAN;
2.40A {Homo sapiens} PDB: 2vc2_B* 2vdk_B* 2vdm_B*
2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B*
1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Length = 461
Score = 26.9 bits (59), Expect = 8.8
Identities = 17/139 (12%), Positives = 42/139 (30%), Gaps = 29/139 (20%)
Query: 261 SSSLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLI 320
S S++ + +++ + ++K+ +R+G F D+ + P + +
Sbjct: 121 SYSMKDDLWS---IQNLGTKLATQMRKL---TSNLRIGFGAFVDKPV-SPYMYISPPEAL 173
Query: 321 R--------TIVKTFAIDENEMGSTAINDAMQTAYDTIISSNED----------EVHRMK 362
T + F + + + +S N D +
Sbjct: 174 ENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCD 233
Query: 363 NNL----EAKKYIVLLTDG 377
+ +A +V TD
Sbjct: 234 EKIGWRNDASHLLVFTTDA 252
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.319 0.133 0.378
Gapped
Lambda K H
0.267 0.0465 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,796,007
Number of extensions: 173203
Number of successful extensions: 449
Number of sequences better than 10.0: 1
Number of HSP's gapped: 439
Number of HSP's successfully gapped: 34
Length of query: 458
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 362
Effective length of database: 3,365,806
Effective search space: 1218421772
Effective search space used: 1218421772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.8 bits)