RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780388|ref|YP_003064801.1| hypothetical protein CLIBASIA_01365 [Candidatus Liberibacter asiaticus str. psy62] (458 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 60.3 bits (146), Expect = 8e-10 Identities = 75/476 (15%), Positives = 113/476 (23%), Gaps = 239/476 (50%) Query: 42 DVVRWSYYEHALKQAAQTAIITASVPLIQS--LEEVSSRAKNSFT-FPKQ-KIEEYLIRN 97 ++++ +Y A+ S V F Q ++Y Sbjct: 121 ELIK-NYI------TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY---- 169 Query: 98 FENNLKKNFTDREVRDIVRDTAVEMNPRKSAYQVVLSSRYDL------LLNPLS------ 145 FE E+RD+ T Y V++ DL L+ L Sbjct: 170 FE----------ELRDLY-QT----------YHVLVG---DLIKFSAETLSELIRTTLDA 205 Query: 146 --LFLRSMGIKSWLIQTKAEAE---------TVS-------------------------- 168 +F + + I WL +S Sbjct: 206 EKVFTQGLNILEWL--ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL 263 Query: 169 RSY------HKEHGV--------SIQW---------VID--F---SRSMLDYQR------ 194 RSY H + G+ + W I F R Y Sbjct: 264 RSYLKGATGHSQ-GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322 Query: 195 ---DS----EGQPLNCFGQPADRTVKSY--SSQNGKVGIRD---EKLSPYMVSCNKSLYY 242 DS EG P S S I + E++ Y+ N L Sbjct: 323 ILEDSLENNEGVP-------------SPMLS-------ISNLTQEQVQDYVNKTNSHL-- 360 Query: 243 MLYPGPLDP----SL--SEEHFVDS---SSLRHVIKKKHLVRDALASVIRSIKKIDNVND 293 P SL ++ V S SL L +R K + D Sbjct: 361 -----PAGKQVEISLVNGAKNLVVSGPPQSLYG-----------LNLTLRKAKAPSGL-D 403 Query: 294 TVRMGATFFNDR---------VISDPSF-SWGVHKLIRT---IVKTFAIDENEMGSTAIN 340 R+ F++R ++ P F S H L+ I K + + Sbjct: 404 QSRIP---FSERKLKFSNRFLPVASP-FHS---HLLVPASDLINKDLVKNNVSFNA---K 453 Query: 341 DAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGI------AIC 390 D YDT DG + + I I Sbjct: 454 DIQIPVYDT-------------------------FDGSDLRVLSGSISERIVDCII 484 Score = 40.7 bits (95), Expect = 6e-04 Identities = 52/329 (15%), Positives = 96/329 (29%), Gaps = 140/329 (42%) Query: 14 LIKSCTGHF-FIITALLMPVMLGVGGMLVDVVRW-SYYEHALK-------------QAAQ 58 +K TGH ++TA+ + D W S++ K +A Sbjct: 266 YLKGATGHSQGLVTAVAIAE--------TD--SWESFFVSVRKAITVLFFIGVRCYEAYP 315 Query: 59 TAIITASVPLIQSLEE----------VS--SRAK--------NSFTFPK-QKIEEYLIRN 97 + S+ L SLE +S ++ + NS P +++E L+ Sbjct: 316 NTSLPPSI-LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH-LPAGKQVEISLV-- 371 Query: 98 FENNLKKNFT-----------DREVRDIVRDTAVEMN--P---RKSAYQVVLSSRY---- 137 N KN + +R + ++ + P RK + S+R+ Sbjct: 372 ---NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK----LKFSNRFLPVA 424 Query: 138 -----DLLLNPLSLFLRSMGIKSWLIQTKAEAETVSRSYH-------KEHGVSI------ 179 LL+ L + + + K V Y + SI Sbjct: 425 SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV---YDTFDGSDLRVLSGSISERIVD 481 Query: 180 -------QW--VIDFSRS-MLDYQRDSEGQPLNCFGQPADRTVKSYSSQN--GKVGIRDE 227 +W F + +LD FG + + +N G G+R Sbjct: 482 CIIRLPVKWETTTQFKATHILD------------FGPGGASGLGVLTHRNKDGT-GVR-- 526 Query: 228 KLSPYMVSCNKSLYYMLYPGPLDPSLSEE 256 ++ G LD + ++ Sbjct: 527 ---------------VIVAGTLDINPDDD 540 Score = 40.7 bits (95), Expect = 8e-04 Identities = 53/361 (14%), Positives = 101/361 (27%), Gaps = 143/361 (39%) Query: 169 RSYHKEHGVSIQWVIDFSRSMLDYQRDSEGQPLNCFGQPADRTVKSYSSQNGKVGIRDEK 228 R HG S++ V+ + L ++ K DE Sbjct: 7 RPLTLSHG-SLEHVLLVPTASF-----FIASQLQ------EQFNKILPEPTEGFAADDEP 54 Query: 229 LSPYMVS-CNKSLYYMLY------PGPLDPSLS------EEHFVDSSSLRHVI------- 268 +P K L Y+ G D L+ E +++ + + H + Sbjct: 55 TTP--AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-HALAAKLLQE 111 Query: 269 ------KKKHLVRDALASVIRSIKKIDNV----------NDTVRMGATF---------FN 303 K K L+++ + + I + + D ++ A F F Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE 171 Query: 304 D-RVISD--PSFSWGVHKLIRTIVKTFAIDENEMGSTAIN---------DAMQ------- 344 + R + V LI+ +T +E+ T ++ + ++ Sbjct: 172 ELRDLYQTYHVL---VGDLIKFSAETL----SELIRTTLDAEKVFTQGLNILEWLENPSN 224 Query: 345 ---TAYDTIISSNEDEV-----------HRMKNNLEAKKYIVL-----LTDGENTQDNEE 385 Y ++S + H Y+V T GE + + Sbjct: 225 TPDKDY--LLSI---PISCPLIGVIQLAH----------YVVTAKLLGFTPGE-LRSYLK 268 Query: 386 GIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDRI 445 G SQG+ + +A + S SFF + + +F I Sbjct: 269 GAT----GHSQGL-VTAVAIAE--------------TDSWESFFV-SVRKAITVLF--FI 306 Query: 446 G 446 G Sbjct: 307 G 307 >2odp_A Complement C2; C3/C5 convertase, complement serine protease, human complement system, glycoprotein, SP, VWFA, hydrolase; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Length = 509 Score = 58.0 bits (139), Expect = 4e-09 Identities = 27/188 (14%), Positives = 54/188 (28%), Gaps = 12/188 (6%) Query: 277 ALASVIRSIKKIDNVNDTVRMGATFFNDRVIS----DPSFSWGVHKLIRTIVKTFAIDEN 332 S + +I + V + F S + ++I ++ D Sbjct: 30 FKESASLMVDRIFSFEINVSVAIITFASEPKVLMSVLNDNSRDMTEVISSLENANYKDHE 89 Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGEN--------TQDNE 384 T A+ + Y + + E + I+LLTDG++ D+ Sbjct: 90 NGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHI 149 Query: 385 EGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDR 444 I N+ ++ + I I + S F T L+++F Sbjct: 150 REILNINQKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHM 209 Query: 445 IGNEIFER 452 + Sbjct: 210 LDVSKLTD 217 >3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement system, convertase, complement alternate pathway, complement pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 3hs0_D* 2ok5_A* Length = 741 Score = 57.2 bits (137), Expect = 7e-09 Identities = 24/198 (12%), Positives = 52/198 (26%), Gaps = 24/198 (12%) Query: 275 RDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHK----LIRTIVKTFAID 330 A ++ I+K+ + R G + S + + + + D Sbjct: 262 TGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYED 321 Query: 331 ENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAIC 390 T A+Q Y + ++ + + I+L+TDG + + I Sbjct: 322 HKLKSGTNTKKALQAVYSMMSWPDD---VPPEGWNRTRHVIILMTDGLHNMGGDPITVID 378 Query: 391 ------------NKAKSQGIRIMTIAFS--VNKTQQEKARYFLSNCASPNSFFEANSTHE 436 + + + VN+ S + F+ Sbjct: 379 EIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINA---LASKKDNEQHVFKVKDMEN 435 Query: 437 LNKIFRDRIGNEIFERVI 454 L +F I + Sbjct: 436 LEDVFYQMIDESQSLSLC 453 >1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 Length = 198 Score = 56.8 bits (136), Expect = 1e-08 Identities = 26/181 (14%), Positives = 63/181 (34%), Gaps = 16/181 (8%) Query: 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN 332 + + + +VI + + + F+++ + +F + + A Sbjct: 29 TMMNFVRAVISQFQ-----RPSTQFSLMQFSNKFQTHFTFEE--FRRSSNPLSLLASVHQ 81 Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNK 392 G T A+Q + ++ +A K ++++TDG+ D+ + + Sbjct: 82 LQGFTYTATAIQNVVHRLFHASYG------ARRDAAKILIVITDGKKEGDSLDYKDVIPM 135 Query: 393 AKSQGIRIMTIAF--SVNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDRIGNEIF 450 A + GI I + K +++ S F+ L I +++ +IF Sbjct: 136 ADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQ-NQLKEKIF 194 Query: 451 E 451 Sbjct: 195 A 195 >1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 1n9z_A 1bhq_1 1bho_1 1idn_1 Length = 194 Score = 54.9 bits (131), Expect = 4e-08 Identities = 25/180 (13%), Positives = 65/180 (36%), Gaps = 16/180 (8%) Query: 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN 332 +++ +++V+ +KK + ++ F + + L++ I Sbjct: 25 RMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFKEFQNNPNPRSLVKPI-------TQ 77 Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNK 392 +G T ++ + + A K +V++TDGE D + + Sbjct: 78 LLGRTHTATGIRKVVRELFNI------TNGARKNAFKILVVITDGEKFGDPLGYEDVIPE 131 Query: 393 AKSQGIRIMTIAF--SVNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDRIGNEIF 450 A +G+ I + + + +++ + F+ N+ L I +++ +IF Sbjct: 132 ADREGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQ-NQLREKIF 190 >1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C Length = 202 Score = 52.2 bits (124), Expect = 2e-07 Identities = 20/198 (10%), Positives = 58/198 (29%), Gaps = 25/198 (12%) Query: 259 VDSS-SLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVH 317 +D S L + +++ + ++ +++ VR+ ++D + Sbjct: 20 LDGSSRLSE--AEFEVLKAFVVDMM---ERLRVSQKWVRVAVVEYHDGSHAYIGLKDRKR 74 Query: 318 KLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDG 377 + + + + + T+ + ++L+ Sbjct: 75 PSELRR----IASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASR----IALLLMASQ 126 Query: 378 ENTQDNEEGIAICNKAKSQGIRIMTIAF--SVNKTQQEKARYFLSNCASPNSFFEANSTH 435 E + + + K + + ++ + N Q + A N F +S Sbjct: 127 EPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRL----IEKQAPENKAFVLSSVD 182 Query: 436 ELNKIFRDRIGNEIFERV 453 EL + +EI + Sbjct: 183 ELEQQR-----DEIVSYL 195 >1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A Length = 213 Score = 47.9 bits (113), Expect = 5e-06 Identities = 38/199 (19%), Positives = 71/199 (35%), Gaps = 22/199 (11%) Query: 259 VDSSSLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHK 318 +D S+ I V L ++ K++D ++G + + V + + + Sbjct: 14 LDGSN---SIYPWDSVTAFLNDLL---KRMDIGPKQTQVGIVQYGENVTHEFNLNKYSST 67 Query: 319 LIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGE 378 V A + G A+ T + E R KK +V++TDGE Sbjct: 68 ---EEVLVAAKKIVQRGGRQTMTALGTDTARKEAFTEARGARR----GVKKVMVIVTDGE 120 Query: 379 NTQDNEEGIAICNKAKSQGIRIMTI----AFSVNKTQQEKARYFLSNCASPNS---FFEA 431 + DN + + + I+ +I +++ EK + + AS + FF Sbjct: 121 S-HDNHRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNV 179 Query: 432 NSTHELNKIFRDRIGNEIF 450 + L I +G IF Sbjct: 180 SDELALVTIV-KTLGERIF 197 >1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 Length = 223 Score = 47.6 bits (112), Expect = 6e-06 Identities = 25/185 (13%), Positives = 48/185 (25%), Gaps = 20/185 (10%) Query: 277 ALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFA----IDEN 332 A S++ I+K+ + R G + S + K D Sbjct: 36 AKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHK 95 Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENT------------ 380 T A+Q Y + ++ + + I+L+TDG + Sbjct: 96 LKSGTNTKKALQAVYSMMSWPDD---VPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEI 152 Query: 381 QDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHELNKI 440 +D + + + Q S + F+ L + Sbjct: 153 RDLLYIGKDRKNPREDYLDVYVFGVGPL-VNQVNINALASKKDNEQHVFKVKDMENLEDV 211 Query: 441 FRDRI 445 F I Sbjct: 212 FYQMI 216 >1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Length = 497 Score = 46.8 bits (110), Expect = 9e-06 Identities = 21/200 (10%), Positives = 49/200 (24%), Gaps = 23/200 (11%) Query: 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVIS----DPSFSWGVHKLIRTIVKTFA 328 + L ++I + R G + + S + + + + Sbjct: 21 GAKKVLVNLIEKVASYG---VKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINY 77 Query: 329 IDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIA 388 D T A+Q Y + ++ + + I+L+TDG + + Sbjct: 78 EDHKLKSGTNTKKALQAVYSMMSWPDD---VPPEGWNRTRHVIILMTDGLHNMGGDPITV 134 Query: 389 I------------CNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHE 436 I + + + Q S + + Sbjct: 135 IDEIRDLLYIGKDRKNPREDYLDVYVFGVG-PLVNQVNINALASKKDNEQHVCKVKDMEC 193 Query: 437 LNKIFRDRIGNEIFERVIRI 456 L +F I + + Sbjct: 194 LEDVFYQMIDESQSLSLCGM 213 >2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} Length = 178 Score = 44.4 bits (104), Expect = 5e-05 Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 10/133 (7%) Query: 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN 332 LV+ L + + + + V ++ V + Sbjct: 37 LVKQFLHTFL---MVLPIGPEEVNNAVVTYSTDVHLQWDLQSPNAVDKQLAAHAVLDMPY 93 Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNK 392 + GST +D ++ + + K ++ +TDGE+ D A + Sbjct: 94 KKGSTNTSDGLKACKQILFT------GSRPGREHVPKLVIGMTDGESDSDFRTVRAA-KE 146 Query: 393 AKSQGIRIMTIAF 405 + G + +A Sbjct: 147 IRELGGIVTVLAV 159 >2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- sheet, RNA binding protein; 1.89A {Deinococcus radiodurans} Length = 535 Score = 40.3 bits (94), Expect = 9e-04 Identities = 6/84 (7%), Positives = 16/84 (19%), Gaps = 18/84 (21%) Query: 328 AIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDN---E 384 G T + V+ TD E Sbjct: 432 KAQSVSFGGTDCAQPIL---------------WAAQERLDVDTFVVYTDNETWAGQVHPT 476 Query: 385 EGIAICNKAKSQGIRIMTIAFSVN 408 + + + +++ + + Sbjct: 477 VALDQYAQKMGRAPKLIVVGLTAT 500 >2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} Length = 189 Score = 37.4 bits (86), Expect = 0.008 Identities = 16/154 (10%), Positives = 36/154 (23%), Gaps = 28/154 (18%) Query: 269 KKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFA 328 + + A+ ++ + F + ++ Sbjct: 21 ARLSEAKGAVELLLG-----RAYAARDHVSLITFRGTAAQVLLQPSRSLTQTKRQLQGLP 75 Query: 329 IDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENT-------- 380 G T + M+ A T + I LLTDG Sbjct: 76 GG----GGTPLASGMEMAMVTAKQARSRG---------MTPTIALLTDGRGNIALDGTAN 122 Query: 381 --QDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQ 412 E+ + ++ G+ + I ++ Sbjct: 123 RELAGEQATKVARAIRASGMPAVIIDTAMRPNPA 156 >1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Escherichia coli} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3f78_A* ... Length = 179 Score = 36.5 bits (83), Expect = 0.012 Identities = 21/179 (11%), Positives = 57/179 (31%), Gaps = 23/179 (12%) Query: 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN 332 + D + V++ N + + A F+ ++ FS V + + ++ Sbjct: 22 KILDFMKDVMKKCS-----NTSYQFAAVQFSTSYKTEFDFSDYVKR--KDPDALLKHVKH 74 Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNK 392 + T A+ + +A K ++++TDGE T Sbjct: 75 MLLLTNTFGAINYVATEVFREELG------ARPDATKVLIIITDGEATDSGNI------- 121 Query: 393 AKSQGIRIMTIAFS--VNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDRIGNEI 449 ++ I I + ++ + ++ + ++ +L + + +I Sbjct: 122 DAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDLC-TELQKKI 179 >3gxb_A VON willebrand factor; VWA-like fold, blood coagulation, cell adhesion, cleavage on PAIR of basic residues, disease mutation, disulfide bond; HET: NAG; 1.90A {Homo sapiens} Length = 184 Score = 36.0 bits (82), Expect = 0.019 Identities = 17/173 (9%), Positives = 49/173 (28%), Gaps = 23/173 (13%) Query: 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN 332 ++ + VI+ + + + V + + V S + +++ + + N Sbjct: 22 RSKEFMEEVIQRMD-VGQDSIHVTVLQYSYMVTVEYPFSEAQSKGDILQRVREIRYQGGN 80 Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNK 392 A++ D + +A + ++T + + I Sbjct: 81 RT---NTGLALRYLSDHSFLV------SQGDREQAPNLVYMVTGNPASDE------IKRL 125 Query: 393 AKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDRI 445 + + + + N + L PN+ L + D + Sbjct: 126 PGDIQVVPIGVGPNANVQE-------LERIGWPNAPILIQDFETLPREAPDLV 171 >1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B* Length = 565 Score = 33.9 bits (77), Expect = 0.078 Identities = 14/97 (14%), Positives = 26/97 (26%), Gaps = 10/97 (10%) Query: 318 KLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDG 377 L+ I + DA+ + D I H K++I + TD Sbjct: 89 DLLEDIESKIQPGSQQ---ADFLDALIVSMDVIQ-------HETIGKKFEKRHIEIFTDL 138 Query: 378 ENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEK 414 + + I + K I + + Sbjct: 139 SSRFSKSQLDIIIHSLKKCDISLQFFLPFSLGKEDGS 175 >2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P Length = 674 Score = 32.8 bits (74), Expect = 0.18 Identities = 15/107 (14%), Positives = 41/107 (38%), Gaps = 15/107 (14%) Query: 40 LVDVVRWSYYEHALKQAAQTAIITASVPLIQSLEEVSSRAKNSFTF-----PKQKIEEYL 94 +V+ +RW +++ + I + ++V ++ ++ +E Sbjct: 5 VVNDLRWDLSAQQIEERTRELIEQTK----RVYDQVGTQEFEDVSYESTLKALADVEVTY 60 Query: 95 --IRNFENNLKKNFTDREVRDIVRDTAVEMNPRKSAYQVVLSSRYDL 139 RN + + +++R + E + + S + V +S R D+ Sbjct: 61 TVQRNILDFPQHVSPSKDIRTA----STEADKKLSEFDVEMSMREDV 103 >1h12_A Endo-1,4-beta-xylanase; hydrolase, xylan degradation, psychrophilic, cold adaptation, temperature, glycosyl hydrolase, family 8; HET: XYP XYS; 1.2A {Pseudoalteromonas haloplanktis} SCOP: a.102.1.2 PDB: 1h13_A 1xw2_A 1xwq_A* 1h14_A 1xwt_A 2b4f_A* 2a8z_A* Length = 405 Score = 32.0 bits (72), Expect = 0.29 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 15/108 (13%) Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRM---KNNLEAKKYIVLLTDGENTQDNEEGIAI 389 EMG T I + + +D + N + +N + YI + E EG Sbjct: 23 EMGKTNIQQKVNSTFDNMFGYNNTQQLYYPYTENGVYKAHYIKAINPDEGDDIRTEG--- 79 Query: 390 CNKAKSQGIRIMTIAFSVNKTQQEKA--RYFLSNCASPNSFFEANSTH 435 +S G MT A +NK ++ R+ + +P++ +A Sbjct: 80 ----QSWG---MTAAVMLNKQEEFDNLWRFAKAYQKNPDNHPDAKKQG 120 >2jow_A Protein PRGI; needle protein, transport protein; NMR {Salmonella typhimurium} Length = 83 Score = 31.4 bits (71), Expect = 0.38 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 46 WSYYEHALKQAAQTAIITASVPLIQSLEEVSSRAKNSFTFPK--QKIEEY-LIRNFENNL 102 WS Y + T + + ++L++++++ + K+ EY L RN ++N Sbjct: 5 WSGYLDDVSAKFDTGVDNLQTQVTEALDKLAAKPSDPALLAAYQSKLSEYNLYRNAQSNT 64 Query: 103 KKNFTD 108 K F D Sbjct: 65 VKVFKD 70 >1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A Length = 538 Score = 31.1 bits (70), Expect = 0.56 Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 24/123 (19%) Query: 261 SSSLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLI 320 S+S+ + L +A+ + + + + F+D ++ P V+ L+ Sbjct: 378 SASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVA----FSDEMLPCP---ITVNMLL 430 Query: 321 RTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENT 380 +V+ + + MGST M A A ++ TD E Sbjct: 431 HEVVE--KMSDITMGSTDCALPMLWAQK---------------TNTAADIFIVFTDCETN 473 Query: 381 QDN 383 ++ Sbjct: 474 VED 476 >2o3e_A Neurolysin; thermolysin-like domain, substrate-binding channel, hydrolase; 2.20A {Rattus norvegicus} PDB: 1i1i_P Length = 678 Score = 30.1 bits (67), Expect = 0.99 Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 15/104 (14%) Query: 43 VVRWSYYEHALKQAAQTAIITASVPLIQSLEEVSSRAKNSFTF-----PKQKIEEYLIRN 97 V+RW +K + I Q + V + A T+ IE I Sbjct: 24 VLRWDLSPEQIKTRTEQLIAQTK----QVYDTVGTIALKEVTYENCLQVLADIEVTYIVE 79 Query: 98 FE--NNLKKNFTDREVRDIVRDTAVEMNPRKSAYQVVLSSRYDL 139 + + +DREVR + E + + S + + +S R D+ Sbjct: 80 RTMLDFPQHVSSDREVRAA----STEADKKLSRFDIEMSMREDV 119 >2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus} Length = 212 Score = 29.7 bits (66), Expect = 1.4 Identities = 13/118 (11%), Positives = 37/118 (31%), Gaps = 15/118 (12%) Query: 261 SSSLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLI 320 S S + + V+ + +++++ +I + R+G + Sbjct: 13 SGSAQGHLSN---VQTLGSDLLKALNEISR---SGRIGFGSIVNMTFQHILKLTADSSQF 66 Query: 321 RTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGE 378 + ++ + DA+ + R +++VL+TD + Sbjct: 67 QRELRKQLVSGKLATPKGQLDAVVQV----AICLGEIGWR-----NGTRFLVLVTDND 115 >1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase; 1.82A {Streptococcus mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A* 2qe0_A* 2esd_A* 1qi1_A* Length = 475 Score = 29.0 bits (64), Expect = 2.0 Identities = 13/106 (12%), Positives = 36/106 (33%), Gaps = 11/106 (10%) Query: 265 RHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIV 324 + + L+ DA ++ +I + + F+ + I+ Sbjct: 329 KSADYVEGLINDANDKGATALTEIKR--EGNLICPILFDKVTTDMRLAWEEPFGPVLPII 386 Query: 325 KTFAIDENEMGSTAINDAMQTAY---DTIISSNEDEVHRMKNNLEA 367 + +++E AI + ++ Y +I +++ + LE Sbjct: 387 RVTSVEE------AIEISNKSEYGLQASIFTNDFPRAFGIAEQLEV 426 >2i6e_A Hypothetical protein; NYSGXRC,10093B, structural genomics, PSI-2, protein structure initiative; 2.50A {Deinococcus radiodurans} SCOP: c.94.1.1 Length = 301 Score = 28.0 bits (62), Expect = 4.8 Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 17/102 (16%) Query: 25 ITALLMPVMLGVGGMLVDVVRWSYYEHALKQAAQTAIITASVPLIQSLEEVSSRAKNSFT 84 +T + + + AL QA + A I L EVS R Sbjct: 197 LTGHPFTFAVWA------YRKDNPPPAALLQAMREARRRG----IGHLAEVSQRHAEKLG 246 Query: 85 FPKQKIEEYLIRNFENNLKKNFTDREVRDIVR--DTAVEMNP 124 P++ ++ YL N + + + + D AV + Sbjct: 247 LPERVVQHYL-----WNFRYHLEAPDRLGLREFADLAVPGHA 283 >1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A* Length = 437 Score = 27.9 bits (61), Expect = 5.4 Identities = 19/188 (10%), Positives = 53/188 (28%), Gaps = 10/188 (5%) Query: 270 KKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAI 329 + L S+ + + R + ++ P + + + Sbjct: 185 RGFLEGTLAESLFAGSNEASKALTSARFVLSDKLPEHVTMPDGDFSIRSWLEDPNGGNLF 244 Query: 330 -----DENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNE 384 D I+ + +I+S E+ R+ ++ + L + Sbjct: 245 ITWREDMGPALRPLISAWVDVVCTSILSLPEEPKRRLWLFIDELASLEKLASLADALTKG 304 Query: 385 EGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDR 444 + A Q + + + ++A+ ++ S + + + N+ Sbjct: 305 RKAGLRVVAGLQ-----STSQLDDVYGVKEAQTLRASFRSLVVLGGSRTDPKTNEDMSLS 359 Query: 445 IGNEIFER 452 +G ER Sbjct: 360 LGEHEVER 367 >2vdr_B Integrin beta-3; cell adhesion/immune system, alternative splicing, platelet integrin ALPHAIIBBETA3, polymorphism, glycoprotein, cell adhesion, calcium; HET: NAG MAN; 2.40A {Homo sapiens} PDB: 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B* Length = 461 Score = 26.9 bits (59), Expect = 8.8 Identities = 17/139 (12%), Positives = 42/139 (30%), Gaps = 29/139 (20%) Query: 261 SSSLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLI 320 S S++ + +++ + ++K+ +R+G F D+ + P + + Sbjct: 121 SYSMKDDLWS---IQNLGTKLATQMRKL---TSNLRIGFGAFVDKPV-SPYMYISPPEAL 173 Query: 321 R--------TIVKTFAIDENEMGSTAINDAMQTAYDTIISSNED----------EVHRMK 362 T + F + + + +S N D + Sbjct: 174 ENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCD 233 Query: 363 NNL----EAKKYIVLLTDG 377 + +A +V TD Sbjct: 234 EKIGWRNDASHLLVFTTDA 252 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.319 0.133 0.378 Gapped Lambda K H 0.267 0.0465 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,796,007 Number of extensions: 173203 Number of successful extensions: 449 Number of sequences better than 10.0: 1 Number of HSP's gapped: 439 Number of HSP's successfully gapped: 34 Length of query: 458 Length of database: 5,693,230 Length adjustment: 96 Effective length of query: 362 Effective length of database: 3,365,806 Effective search space: 1218421772 Effective search space used: 1218421772 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.8 bits)