RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780389|ref|YP_003064802.1| hypothetical protein CLIBASIA_01370 [Candidatus Liberibacter asiaticus str. psy62] (45 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 28.0 bits (62), Expect = 0.61 Identities = 7/24 (29%), Positives = 10/24 (41%) Query: 18 FNGEGGYSKYYRNFIISCRTYRVF 41 F G+G Y+ +TY V Sbjct: 160 FGGQGNTDDYFEELRDLYQTYHVL 183 >3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 2enq_A Length = 1091 Score = 23.8 bits (51), Expect = 8.8 Identities = 9/31 (29%), Positives = 9/31 (29%) Query: 15 FLKFNGEGGYSKYYRNFIISCRTYRVFTAIF 45 N Y F SC Y V T I Sbjct: 904 LKDKNKGEIYDAAIDLFTRSCAGYCVATFIL 934 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.338 0.153 0.503 Gapped Lambda K H 0.267 0.0530 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 460,374 Number of extensions: 13990 Number of successful extensions: 110 Number of sequences better than 10.0: 1 Number of HSP's gapped: 110 Number of HSP's successfully gapped: 9 Length of query: 45 Length of database: 5,693,230 Length adjustment: 18 Effective length of query: 27 Effective length of database: 5,256,838 Effective search space: 141934626 Effective search space used: 141934626 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.7 bits) S2: 50 (23.5 bits)