RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780389|ref|YP_003064802.1| hypothetical protein
CLIBASIA_01370 [Candidatus Liberibacter asiaticus str. psy62]
         (45 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.0 bits (62), Expect = 0.61
 Identities = 7/24 (29%), Positives = 10/24 (41%)

Query: 18  FNGEGGYSKYYRNFIISCRTYRVF 41
           F G+G    Y+       +TY V 
Sbjct: 160 FGGQGNTDDYFEELRDLYQTYHVL 183


>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit
           alpha isoform; PI3KCA, PI3K, PIK3R1,
           phosphatidilynositol 3,4,5- triphosphate, wortmannin,
           H1047R, ATP-binding, disease mutation, kinase; HET: KWT;
           2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 2enq_A
          Length = 1091

 Score = 23.8 bits (51), Expect = 8.8
 Identities = 9/31 (29%), Positives = 9/31 (29%)

Query: 15  FLKFNGEGGYSKYYRNFIISCRTYRVFTAIF 45
               N    Y      F  SC  Y V T I 
Sbjct: 904 LKDKNKGEIYDAAIDLFTRSCAGYCVATFIL 934


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.338    0.153    0.503 

Gapped
Lambda     K      H
   0.267   0.0530    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 460,374
Number of extensions: 13990
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 9
Length of query: 45
Length of database: 5,693,230
Length adjustment: 18
Effective length of query: 27
Effective length of database: 5,256,838
Effective search space: 141934626
Effective search space used: 141934626
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 50 (23.5 bits)