RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780390|ref|YP_003064803.1| nucleoside diphosphate kinase [Candidatus Liberibacter asiaticus str. psy62] (140 letters) >1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP, PSI; 3.05A {Plasmodium falciparum 3D7} (A:) Length = 157 Score = 156 bits (394), Expect = 1e-39 Identities = 51/139 (36%), Positives = 83/139 (59%) Query: 1 MVIEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFF 60 +EK+F MIKPD V+R L+G+I+K E G ++A K + ++ Y D+PFF Sbjct: 7 HHMEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFF 66 Query: 61 PELVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSD 120 LV + GPV V +G + + + R+++G+T+P + GTIR + + + +N IHGSD Sbjct: 67 KNLVAYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIHGSD 126 Query: 121 SLKTALEEISYWFARNEII 139 S+ +A +EI+ WF E+ Sbjct: 127 SVASANKEINIWFKAEELT 145 >1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} (R:) Length = 144 Score = 155 bits (394), Expect = 2e-39 Identities = 69/137 (50%), Positives = 97/137 (70%) Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62 IE+T S+IKPD +++ +IG I+ E+ GL VA + +++ QAE FY +HK RPFF + Sbjct: 2 IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKD 61 Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122 LVQ MISGPV L VL+GE A+ NR++MG T+P +A +GTIR + SI +N++HGSDSL Sbjct: 62 LVQFMISGPVVLMVLEGENAVLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGSDSL 121 Query: 123 KTALEEISYWFARNEII 139 + A EI+Y+F EI Sbjct: 122 ENAKIEIAYFFRETEIH 138 >1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, structural genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} (A:) Length = 169 Score = 155 bits (393), Expect = 2e-39 Identities = 54/139 (38%), Positives = 84/139 (60%) Query: 1 MVIEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFF 60 E+TF +KPD V+R L+G IV+ E G +VA K + + + Y ++RPF+ Sbjct: 19 GAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFY 78 Query: 61 PELVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSD 120 LV+ M SGPV V +G + + +R ++G T+P A GTIR + I +G+N IHGSD Sbjct: 79 GRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSD 138 Query: 121 SLKTALEEISYWFARNEII 139 S+++A EI+ WF +E++ Sbjct: 139 SVESARREIALWFRADELL 157 >2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis} (A:) Length = 148 Score = 155 bits (392), Expect = 2e-39 Identities = 60/137 (43%), Positives = 84/137 (61%) Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62 +EKTF M+KPD V+R IG IV E G +V AK + + A Y H+++PFF E Sbjct: 1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGE 60 Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122 LV + SGPVF V +GE + R +MG T P +A GTIR +G+++ +N IHGSDSL Sbjct: 61 LVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSL 120 Query: 123 KTALEEISYWFARNEII 139 ++A EI +F E++ Sbjct: 121 ESAEREIGIFFKEEELV 137 >3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, anti-oncogene, ATP-binding, cell cycle, cytoplasm; HET: DG DA; 1.30A {Homo sapiens} (A:) Length = 151 Score = 155 bits (392), Expect = 2e-39 Identities = 61/137 (44%), Positives = 86/137 (62%) Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62 +E+TF IKPD V+R L+G I+K E G +VA KF + + + Y+ KDRPFFP Sbjct: 3 LERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPG 62 Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122 LV+ M SGPV V +G + R ++G+T+P + GTIR + I +G N IHGSDS+ Sbjct: 63 LVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSV 122 Query: 123 KTALEEISYWFARNEII 139 K+A +EIS WF E++ Sbjct: 123 KSAEKEISLWFKPEELV 139 >1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} (A:) Length = 137 Score = 154 bits (390), Expect = 4e-39 Identities = 59/137 (43%), Positives = 88/137 (64%) Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62 +E+TF MIKPD V+R L+G I+ E G + A K ++++ AE Y H+++PFFP Sbjct: 1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPG 60 Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122 LV+ + SGPV VL+G +++ R++MG T PK AL GTIR + +I EN IHGS +L Sbjct: 61 LVRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSATL 120 Query: 123 KTALEEISYWFARNEII 139 + A EI+ +F E++ Sbjct: 121 EDAQREIALFFRPEELL 137 >1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} (A:) Length = 153 Score = 154 bits (390), Expect = 5e-39 Identities = 47/137 (34%), Positives = 75/137 (54%) Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62 +E+T+ M+KPD ++R L+G I+ E G ++ K ++ AE+ Y + FFP Sbjct: 5 VEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPN 64 Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122 L++ + SGPV +G ++ R+++G TDP +A GTIR + G N +HGSDS Sbjct: 65 LIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSP 124 Query: 123 KTALEEISYWFARNEII 139 + EI WF E+ Sbjct: 125 ENGKREIGLWFKEGELC 141 >3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infectious disease, babesiosis; 2.50A {Babesia bovis T2BO} (A:) Length = 156 Score = 154 bits (389), Expect = 5e-39 Identities = 53/139 (38%), Positives = 78/139 (56%) Query: 1 MVIEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFF 60 +E+T+ M+KPD V+R LIG I+K E GL ++AAKF Y HKD+PFF Sbjct: 7 HHMERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFF 66 Query: 61 PELVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSD 120 +L + GPVF + +G EAI R ++G T P ++ GTIR +G+ N +H S Sbjct: 67 KDLCDFISHGPVFCMIWEGPEAIKIGRNLVGLTSPVESAAGTIRGDFGVVKNFNIVHASS 126 Query: 121 SLKTALEEISYWFARNEII 139 S + A E + WF +++ Sbjct: 127 SAEDAARECALWFTPEQLV 145 >2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} (A:) Length = 164 Score = 154 bits (389), Expect = 6e-39 Identities = 61/139 (43%), Positives = 84/139 (60%), Gaps = 2/139 (1%) Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62 E+TF M+KPD V+R LIG IV LE GL +V KF ++ + A + Y H+D+PFF Sbjct: 8 DERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDG 67 Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122 LV + SGPVF V +G +A + R++MG TD + A GTIR YG +G N IHGSD Sbjct: 68 LVSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGSDHE 127 Query: 123 KTALE--EISYWFARNEII 139 EI+ +F +E++ Sbjct: 128 DEGANEREIALFFDDDELV 146 >1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer- OF-prune, transferase; 2.40A {Homo sapiens} (A:) Length = 162 Score = 153 bits (388), Expect = 8e-39 Identities = 47/137 (34%), Positives = 74/137 (54%) Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62 E+T +KPD V+R L+G +++ E G +V K + Y + +PF+P Sbjct: 24 RERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPA 83 Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122 L++ M SGPV V +G + +R ++G TD +A GTIR + + I N IH SDS+ Sbjct: 84 LIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSV 143 Query: 123 KTALEEISYWFARNEII 139 + A EI WF +E++ Sbjct: 144 EGAQREIQLWFQSSELV 160 >1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} (A:) Length = 150 Score = 153 bits (387), Expect = 9e-39 Identities = 56/136 (41%), Positives = 80/136 (58%) Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62 +E++F MIKPD V+R LIG I+ E G + KF + R A+ Y D+PFFP Sbjct: 2 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPG 61 Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122 LV+ +ISGPV V +G++ ++ R ++G T P +A GTIR Y + +G N IHGSDS+ Sbjct: 62 LVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSV 121 Query: 123 KTALEEISYWFARNEI 138 +EI+ WF Sbjct: 122 DNGKKEIALWFPEGLA 137 >3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, cytoplasm, magnesium, metal-binding; HET: TNM TNV; 1.65A {Dictyostelium discoideum} PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ... (A:) Length = 155 Score = 152 bits (385), Expect = 1e-38 Identities = 53/139 (38%), Positives = 80/139 (57%) Query: 1 MVIEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFF 60 + E+TF +KPD V R L+G I+ E G +V K + AE Y HK+RPFF Sbjct: 6 VNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFF 65 Query: 61 PELVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSD 120 LV + SGPV V +G+ ++ R ++G T+P + G+IR +G+ +G N I GSD Sbjct: 66 GGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIGGSD 125 Query: 121 SLKTALEEISYWFARNEII 139 S+++A EI+ WF E++ Sbjct: 126 SVESANREIALWFKPEELL 144 >3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, cytoplasm, magnesium, metal-binding, mitochondrion; 3.10A {Saccharomyces cerevisiae} (A:) Length = 161 Score = 152 bits (385), Expect = 2e-38 Identities = 53/139 (38%), Positives = 81/139 (58%) Query: 1 MVIEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFF 60 E+TF +KPD V+R L+ I+ E G +VA K + K E Y H +PFF Sbjct: 11 SQTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFF 70 Query: 61 PELVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSD 120 P++V M SGP+ V +G++ + + R ++G T+P + GTIR +GI +G N HGSD Sbjct: 71 PKMVSFMKSGPILATVWEGKDVVRQGRTILGATNPLGSAPGTIRGDFGIDLGRNVCHGSD 130 Query: 121 SLKTALEEISYWFARNEII 139 S+ +A EI+ WF + E++ Sbjct: 131 SVDSAEREINLWFKKEELV 149 >2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli} (A:) Length = 142 Score = 151 bits (383), Expect = 3e-38 Identities = 61/137 (44%), Positives = 90/137 (65%) Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62 IE+TFS+IKP+AV +N+IG+I E G +V K + +QA FY H +PFF Sbjct: 2 IERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDG 61 Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122 LV+ M SGP+ + VL+GE A+ ++R+++G T+P AL GT+R Y S+ EN HGSDS+ Sbjct: 62 LVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSV 121 Query: 123 KTALEEISYWFARNEII 139 ++A EI+Y+F E+ Sbjct: 122 ESAAREIAYFFGEGEVC 138 >1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} (A:) Length = 150 Score = 151 bits (382), Expect = 3e-38 Identities = 58/137 (42%), Positives = 79/137 (57%) Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62 E+TF M+KPD V+RNL+G +VK E GL + AK +++ A Y PFF Sbjct: 2 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGG 61 Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122 LV SGPVF V +G A + R+++G T+P A GTIR +G+S G N+IHGSDS Sbjct: 62 LVGGATSGPVFAMVWEGLNAAATARQILGATNPSDAAPGTIRGDFGVSAGRNAIHGSDSA 121 Query: 123 KTALEEISYWFARNEII 139 +A +EI +F E Sbjct: 122 GSAAKEIGAFFGGGEAA 138 >2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA; HET: GDP; 1.70A {Pyrococcus horikoshii OT3} (A:) Length = 160 Score = 150 bits (381), Expect = 5e-38 Identities = 58/140 (41%), Positives = 83/140 (59%), Gaps = 3/140 (2%) Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62 E+T +IKPDAV R LIG I+ E GL +V K W++R+ AE Y H+++PFF Sbjct: 7 TERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKA 66 Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGE---NSIHGS 119 L+ + PV + VL+G A+ R++ G TDPK A GTIR +G+ + + N IH S Sbjct: 67 LIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHAS 126 Query: 120 DSLKTALEEISYWFARNEII 139 DS ++A EIS +F E+ Sbjct: 127 DSKESAEREISLFFKPEELF 146 >1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} (A:) Length = 182 Score = 150 bits (380), Expect = 6e-38 Identities = 56/139 (40%), Positives = 79/139 (56%) Query: 1 MVIEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFF 60 +E+TF IKPD V+R LI I+ E G +V K ++ A+ Y K+RPFF Sbjct: 30 AELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFF 89 Query: 61 PELVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSD 120 L + SGPV V +GE I+ R+++G TDP+K+ GTIR + +G N IHGSD Sbjct: 90 NGLCDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSAPGTIRGDLAVVVGRNIIHGSD 149 Query: 121 SLKTALEEISYWFARNEII 139 +TA +EI WF E++ Sbjct: 150 GPETAKDEIKLWFKPEELV 168 Score = 25.1 bits (54), Expect = 4.2 Identities = 2/21 (9%), Positives = 4/21 (19%) Query: 113 ENSIHGSDSLKTALEEISYWF 133 H + +F Sbjct: 2 SYYHHHHHHDYDYPTTENLYF 22 >1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} (A:) Length = 149 Score = 149 bits (377), Expect = 1e-37 Identities = 52/136 (38%), Positives = 78/136 (57%) Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62 +E+TF MIKPD V+R LIG ++ E G + K + R AE Y + FF Sbjct: 1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSG 60 Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122 LV ++SGPV + +G+ + R+++G T+P + GTIR + I IG N IHGSDS+ Sbjct: 61 LVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSV 120 Query: 123 KTALEEISYWFARNEI 138 ++A +EI+ WF + Sbjct: 121 ESARKEIALWFPDGPV 136 >1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} (A:) Length = 136 Score = 146 bits (370), Expect = 1e-36 Identities = 50/131 (38%), Positives = 79/131 (60%), Gaps = 1/131 (0%) Query: 4 EKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPEL 63 E+T +IKPD ++R LIG I+ +E GL + A + ++ + A Y H+ +PFF L Sbjct: 3 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSL 62 Query: 64 VQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALK-GTIRNKYGISIGENSIHGSDSL 122 ++ + SGPV +++G AI+ R++ G TDP +A GTIR + + N +HGSDS Sbjct: 63 LEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSA 122 Query: 123 KTALEEISYWF 133 ++A EI+ WF Sbjct: 123 ESAQREIALWF 133 >3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ... (A:) Length = 146 Score = 146 bits (370), Expect = 1e-36 Identities = 49/140 (35%), Positives = 78/140 (55%), Gaps = 1/140 (0%) Query: 1 MVIEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRK-QAEDFYLIHKDRPF 59 +++T +IKPDA +R+L+ I+ +E +V+ KF + E Y H ++ + Sbjct: 4 AGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSY 63 Query: 60 FPELVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGS 119 F + M+SGP+ V +G +AISK R + G+T+P + GTIR I EN IH S Sbjct: 64 FNDNCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGDLANDIRENLIHAS 123 Query: 120 DSLKTALEEISYWFARNEII 139 DS +A++EIS WF ++ Sbjct: 124 DSEDSAVDEISIWFPETKME 143 >1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} (A:) Length = 195 Score = 135 bits (340), Expect = 3e-33 Identities = 50/180 (27%), Positives = 70/180 (38%), Gaps = 43/180 (23%) Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAK------------------------ 38 +EKT ++KPDAV R L+ I+ + GL +VA K Sbjct: 15 VEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKXVKASPEEIERFYPSSEEWLQSAG 74 Query: 39 ---------FCWMNRKQAEDFYLIHKDRPFFPELVQAMISGPVFLQVLKGEEAISKNREV 89 R + + R LV+ SGP + VLKG A+ R++ Sbjct: 75 QKLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYXTSGPNVVXVLKGNRAVEIVRKL 134 Query: 90 MGDTDPKKALKGTIRNKYGISIGE----------NSIHGSDSLKTALEEISYWFARNEII 139 +G T P A GTIR Y I + N +H SDS A EI +WF E++ Sbjct: 135 VGPTSPHSAPPGTIRGDYSIDSPDLAAEEGRVVFNLVHASDSPSEAEREIRFWFREEEVL 194 >3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A (B:214-352) Length = 139 Score = 121 bits (304), Expect = 4e-29 Identities = 19/138 (13%), Positives = 45/138 (32%), Gaps = 22/138 (15%) Query: 1 MVIEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFF 60 E ++ ++ E+ G +V K M + A+ + R Sbjct: 20 SSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVF-----REKA 74 Query: 61 PELVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSD 120 P+ + + GPV G+ A+ + ++ + + S+ Sbjct: 75 PDFLPLLNKGPVIALEFNGDGAVEVCQLIVNEIFNG-----------------TKMFVSE 117 Query: 121 SLKTALEEISYWFARNEI 138 S +TA ++ ++ +I Sbjct: 118 SKETASGDVDSFYNFADI 135 >3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix} (A:122-261,A:351-391) Length = 181 Score = 26.2 bits (57), Expect = 1.6 Identities = 12/62 (19%), Positives = 23/62 (37%) Query: 17 RNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPELVQAMISGPVFLQV 76 R+ IG+I K GL VV + +A+ + + P+ V + + Sbjct: 35 RSPIGAIKKAAPSLGLQVVGDYDLPLRATEADAERIAREXLAADPDYVWCGNTISSCSLL 94 Query: 77 LK 78 + Sbjct: 95 GR 96 >1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysine, TIM-barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} (A:34-273) Length = 240 Score = 26.0 bits (56), Expect = 1.9 Identities = 16/116 (13%), Positives = 31/116 (26%), Gaps = 9/116 (7%) Query: 14 AVKRNLIGSIVKELEDYGLCVVAA------KFCWMNRKQAEDFYLIHKDRPFFP--ELVQ 65 A K I++ + + G+ V + + I L + Sbjct: 19 AQKACSNIHILRLMREQGVKVDSVSLGEIERALAAGYNPQTHPDDIVFTADVIDQATLER 78 Query: 66 AMISG-PVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSD 120 PV + + + + G ++ + GENS HG Sbjct: 79 VSELQIPVNAGSVDMLDQLGQVSPGHRVWLRVNPGFGHGHSQKTNTGGENSKHGIW 134 >2z4d_A 26S proteasome regulatory subunit RPN13; PH domain, nuclear protein; NMR {Saccharomyces cerevisiae} (A:) Length = 96 Score = 25.1 bits (55), Expect = 3.4 Identities = 11/63 (17%), Positives = 18/63 (28%), Gaps = 7/63 (11%) Query: 1 MVIEKTFSMIKPDAVKRNLIGSI-VKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPF 59 + + P V+ G I +K E+ L F W ++ L Sbjct: 10 CEYNEDSRLCTPIPVQ----GEIEIKPNEEEELGFW--DFEWRPTEKPVGRELDPISLIL 63 Query: 60 FPE 62 P Sbjct: 64 IPG 66 >2nyn_A Phenylalanine/histidine ammonia-lyase; methylidene imidazolone prosthetic group; HET: MDO; 1.90A {Anabaena variabilis} PDB: 3czo_A* 2nyf_A* (A:223-565) Length = 343 Score = 25.0 bits (54), Expect = 3.6 Identities = 4/69 (5%), Positives = 14/69 (20%), Gaps = 3/69 (4%) Query: 25 KELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPELVQA--MISGPVFLQVLKGEEA 82 L + R + + Q + + G Sbjct: 273 HYDARACLSPATERLYSAVRHVV-GQKPTSDRPYIWNDNEQGLDEHIARISADIAAGGVI 331 Query: 83 ISKNREVMG 91 + ++++ Sbjct: 332 VQAVQDILP 340 >2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens} (A:) Length = 70 Score = 24.8 bits (54), Expect = 5.2 Identities = 8/29 (27%), Positives = 13/29 (44%) Query: 20 IGSIVKELEDYGLCVVAAKFCWMNRKQAE 48 +G + L GL + + R+QAE Sbjct: 14 LGGVAGLLLFIGLGIFFSVRSRHRRRQAE 42 >2rg4_A Uncharacterized protein; rhodobacterales, Q2CBJ1_9RHOB, structural genomics, PSI-2 protein structure initiative; 1.90A {Oceanicola granulosus HTCC2516} PDB: 3bvc_A (A:) Length = 216 Score = 24.4 bits (52), Expect = 5.7 Identities = 3/21 (14%), Positives = 5/21 (23%) Query: 40 CWMNRKQAEDFYLIHKDRPFF 60 W+N + H Sbjct: 105 IWINILPEGGVHGSHIHPHSV 125 >1reg_X T4 REGA; translational regulator protein; 1.90A {Enterobacteria phage T4} (X:) Length = 122 Score = 24.4 bits (53), Expect = 5.8 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 4/47 (8%) Query: 13 DAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLI-HKDRP 58 D V+R+ SI LED+GL + + +F +I K + Sbjct: 67 DEVRRD---SIAWLLEDWGLIEIVPGQRTFMKDLTNNFRVISFKQKH 110 >3kb4_A ALR8543 protein; alpha-beta protein., structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: GR0; 2.41A {Nostoc SP} (A:40-130) Length = 91 Score = 23.9 bits (52), Expect = 8.3 Identities = 4/29 (13%), Positives = 9/29 (31%) Query: 56 DRPFFPELVQAMISGPVFLQVLKGEEAIS 84 D ++V + P Q + + Sbjct: 1 DPDTLQKVVAVLSLTPQGKQAFEDRPXLG 29 >1j27_A Hypothetical protein TT1725; structural genomics, hypothetical protein from thermus thermophilus HB8, MAD; 1.70A {Thermus thermophilus HB8} (A:) Length = 102 Score = 23.8 bits (52), Expect = 8.6 Identities = 6/60 (10%), Positives = 21/60 (35%), Gaps = 8/60 (13%) Query: 66 AMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSLKTA 125 G ++ ++ + R ++ K ++ ++ +S ++G D+ Sbjct: 2 KAYLGLYTARLETPARSLKEKRALI------KPALERLKARFPVSAAR--LYGLDAWGYE 53 >1ktb_A Alpha-N-acetylgalactosaminidase; glycoprotein, (beta/alpha)8 barrel, hydrolase; HET: NAG; 1.90A {Gallus gallus} (A:1-240) Length = 240 Score = 23.7 bits (50), Expect = 9.3 Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 1/55 (1%) Query: 15 VKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPELVQAMIS 69 + G + CW +++ + L+ D FP ++A+ Sbjct: 38 FMEMADRIAEDGWRELGYKYINIDDCWAAKQRDAEGRLV-PDPERFPRGIKALAD 91 >2qvt_A AVRL567-D; AVRL567-A, crystallization, molecular replacement, plant disease resistance, , unknown function; 2.26A {Melampsora lini} (A:) Length = 150 Score = 23.9 bits (51), Expect = 9.3 Identities = 8/22 (36%), Positives = 14/22 (63%) Query: 44 RKQAEDFYLIHKDRPFFPELVQ 65 R+ +DF+L D P FP+ ++ Sbjct: 122 RRTIQDFHLFANDIPNFPDYIK 143 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.320 0.137 0.402 Gapped Lambda K H 0.267 0.0701 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,073,195 Number of extensions: 43703 Number of successful extensions: 143 Number of sequences better than 10.0: 1 Number of HSP's gapped: 136 Number of HSP's successfully gapped: 40 Length of query: 140 Length of database: 4,956,049 Length adjustment: 80 Effective length of query: 60 Effective length of database: 2,251,649 Effective search space: 135098940 Effective search space used: 135098940 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.1 bits)