BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780390|ref|YP_003064803.1| nucleoside diphosphate kinase
[Candidatus Liberibacter asiaticus str. psy62]
         (140 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780390|ref|YP_003064803.1| nucleoside diphosphate kinase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 140

 Score =  290 bits (742), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 140/140 (100%), Positives = 140/140 (100%)

Query: 1   MVIEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFF 60
           MVIEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFF
Sbjct: 1   MVIEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFF 60

Query: 61  PELVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSD 120
           PELVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSD
Sbjct: 61  PELVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSD 120

Query: 121 SLKTALEEISYWFARNEIIG 140
           SLKTALEEISYWFARNEIIG
Sbjct: 121 SLKTALEEISYWFARNEIIG 140


>gi|254780999|ref|YP_003065412.1| NAD synthetase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 562

 Score = 22.7 bits (47), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 9/53 (16%)

Query: 89  VMGDTDPKKALKGTIRNKYGISIGENSIHGS---------DSLKTALEEISYW 132
           +M  ++  KA+  T  NK  IS+G  +++G          D  KT + +++ W
Sbjct: 391 LMALSNHSKAMLLTTSNKSEISVGYGTLYGDMSGGFNPLKDLYKTQVFQLASW 443


>gi|254781026|ref|YP_003065439.1| hypothetical protein CLIBASIA_04640 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 186

 Score = 22.7 bits (47), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 51 YLIHKDRPFFPE----LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPK 96
          Y   ++RPF        + A+I G   LQVL GE++++ N  +  D  P+
Sbjct: 45 YSFIQNRPFRSPHHSVTIAALIGG--GLQVLPGEDSLAHNGVLFLDEIPE 92


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.137    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,074
Number of Sequences: 1233
Number of extensions: 3319
Number of successful extensions: 5
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 140
length of database: 328,796
effective HSP length: 66
effective length of query: 74
effective length of database: 247,418
effective search space: 18308932
effective search space used: 18308932
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 34 (17.7 bits)