HHsearch alignment for GI: 254780391 and conserved domain: COG2927
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair].
Probab=100.00 E-value=1.8e-35 Score=234.35 Aligned_cols=136 Identities=23% Similarity=0.462 Sum_probs=123.8
Q ss_pred CCEEEEEECCCC-HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 982799631674-8999999999999779849998299899999999852188233313322477765444220699832
Q gi|254780391|r 1 MRTLLFYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 (141)
Q Consensus 1 Mt~v~FY~l~~~-~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~~~~~~PV~i~~ 79 (141)
T Consensus 1 M~~~~FY~l~~~~~~~~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt~~~~sFiPH~~~~---e~~~~~qPIli~~ 77 (144)
T COG2927 1 MKEATFYLLSESTLLAAACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWTFSAESFIPHNLAG---EPPPAGQPILIAW 77 (144)
T ss_pred CCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCHHCCCCCCCCC---CCCCCCCCEEEEC
T ss_conf 9636899716303999999999999976996999948999999998763236611106776577---8888889899876
Q ss_pred CCCCCCCCCEEEEEECCCCCCCHHHCC-CEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 866789981999981687782113117-5799997598989999999999999988998603
Q gi|254780391|r 80 SSLNANTSTIRFLVDEASMHIGDVDYY-EKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDV 140 (141)
Q Consensus 80 ~~~~~~~~~~~~linl~~~~p~~~~~f-~rvieiv~~~d~~~~~~aR~rwk~yk~~G~~~~~ 140 (141)
T Consensus 78 ~~~~pn~~~~~~lInl~d~~~~~~~~~~~~v~d~V-~d~~~~~~~AR~r~k~yr~~G~~~~~ 138 (144)
T COG2927 78 PGGNPNSARVDLLINLADEFPDFAYEFVTRVFDFV-PDEEALLQLARERWKAYRGAGFQQNT 138 (144)
T ss_pred CCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECC-CCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 88899987601898456467776315889986055-76789999999999999866586576