HHsearch alignment for GI: 254780391 and conserved domain: COG2927

>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair].
Probab=100.00  E-value=1.8e-35  Score=234.35  Aligned_cols=136  Identities=23%  Similarity=0.462  Sum_probs=123.8

Q ss_pred             CCEEEEEECCCC-HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf             982799631674-8999999999999779849998299899999999852188233313322477765444220699832
Q gi|254780391|r    1 MRTLLFYRFKND-WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI   79 (141)
Q Consensus         1 Mt~v~FY~l~~~-~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~~~~~~PV~i~~   79 (141)
T Consensus         1 M~~~~FY~l~~~~~~~~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt~~~~sFiPH~~~~---e~~~~~qPIli~~   77 (144)
T COG2927           1 MKEATFYLLSESTLLAAACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWTFSAESFIPHNLAG---EPPPAGQPILIAW   77 (144)
T ss_pred             CCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCHHCCCCCCCCC---CCCCCCCCEEEEC
T ss_conf             9636899716303999999999999976996999948999999998763236611106776577---8888889899876


Q ss_pred             CCCCCCCCCEEEEEECCCCCCCHHHCC-CEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             866789981999981687782113117-5799997598989999999999999988998603
Q gi|254780391|r   80 SSLNANTSTIRFLVDEASMHIGDVDYY-EKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDV  140 (141)
Q Consensus        80 ~~~~~~~~~~~~linl~~~~p~~~~~f-~rvieiv~~~d~~~~~~aR~rwk~yk~~G~~~~~  140 (141)
T Consensus        78 ~~~~pn~~~~~~lInl~d~~~~~~~~~~~~v~d~V-~d~~~~~~~AR~r~k~yr~~G~~~~~  138 (144)
T COG2927          78 PGGNPNSARVDLLINLADEFPDFAYEFVTRVFDFV-PDEEALLQLARERWKAYRGAGFQQNT  138 (144)
T ss_pred             CCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECC-CCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             88899987601898456467776315889986055-76789999999999999866586576