HHsearch alignment for GI: 254780391 and conserved domain: PRK06646

>PRK06646 DNA polymerase III subunit chi; Provisional.
Probab=100.00  E-value=6.3e-34  Score=224.98  Aligned_cols=133  Identities=16%  Similarity=0.321  Sum_probs=120.3

Q ss_pred             CCEEEEEECC-CCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf             9827996316-748999999999999779849998299899999999852188233313322477765444220699832
Q gi|254780391|r    1 MRTLLFYRFK-NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI   79 (141)
Q Consensus         1 Mt~v~FY~l~-~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~~~~~~PV~i~~   79 (141)
T Consensus         1 Mtei~FYHL~~~~Le~aLp~LLeKsl~~Gwr~vV~~~~~er~~~Ld~~LWTy~~~SFLPHG~~~---~~~~~~QPV~LT~   77 (154)
T PRK06646          1 MQQFSIYQTSDELLLKSILLLIEKCYYSDLKSVILTTDADQQEMLNKNLWTYSRKQFIPHGSKL---DPQPEKQPIYITD   77 (154)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCC---CCCCCCCCEEEEC
T ss_conf             9716889737760999999999999975983999948999999998642226888766776667---9984659889767


Q ss_pred             CCCCCCCCCEEEEEECCCC-----CCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             8667899819999816877-----8211311757999975989899999999999999889986
Q gi|254780391|r   80 SSLNANTSTIRFLVDEASM-----HIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP  138 (141)
Q Consensus        80 ~~~~~~~~~~~~linl~~~-----~p~~~~~f~rvieiv~~~d~~~~~~aR~rwk~yk~~G~~~  138 (141)
T Consensus        78 ~~eNPN~A~vlflvdgad~~~~~~~~~~~~~f~R~v~~fD~~--dd~~~ar~r~~~~k~~~~~l  139 (154)
T PRK06646         78 ELQNPNNASVLVIISPTDIGKILQAKEYIRVFKRIIIITDLP--EDLKELTVKINKFTEQENKI  139 (154)
T ss_pred             CCCCCCCCCEEEEECCCCCCCCCCCCCHHHHEEEEEEECCCH--HHHHHHHHHHHHHHHCCCCC
T ss_conf             888998882899975887432222220220002799954877--78999999999986089973