HHsearch alignment for GI: 254780391 and conserved domain: PRK06646
>PRK06646 DNA polymerase III subunit chi; Provisional.
Probab=100.00 E-value=6.3e-34 Score=224.98 Aligned_cols=133 Identities=16% Similarity=0.321 Sum_probs=120.3
Q ss_pred CCEEEEEECC-CCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 9827996316-748999999999999779849998299899999999852188233313322477765444220699832
Q gi|254780391|r 1 MRTLLFYRFK-NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 (141)
Q Consensus 1 Mt~v~FY~l~-~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~~~~~~PV~i~~ 79 (141)
T Consensus 1 Mtei~FYHL~~~~Le~aLp~LLeKsl~~Gwr~vV~~~~~er~~~Ld~~LWTy~~~SFLPHG~~~---~~~~~~QPV~LT~ 77 (154)
T PRK06646 1 MQQFSIYQTSDELLLKSILLLIEKCYYSDLKSVILTTDADQQEMLNKNLWTYSRKQFIPHGSKL---DPQPEKQPIYITD 77 (154)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCC---CCCCCCCCEEEEC
T ss_conf 9716889737760999999999999975983999948999999998642226888766776667---9984659889767
Q ss_pred CCCCCCCCCEEEEEECCCC-----CCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8667899819999816877-----8211311757999975989899999999999999889986
Q gi|254780391|r 80 SSLNANTSTIRFLVDEASM-----HIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138 (141)
Q Consensus 80 ~~~~~~~~~~~~linl~~~-----~p~~~~~f~rvieiv~~~d~~~~~~aR~rwk~yk~~G~~~ 138 (141)
T Consensus 78 ~~eNPN~A~vlflvdgad~~~~~~~~~~~~~f~R~v~~fD~~--dd~~~ar~r~~~~k~~~~~l 139 (154)
T PRK06646 78 ELQNPNNASVLVIISPTDIGKILQAKEYIRVFKRIIIITDLP--EDLKELTVKINKFTEQENKI 139 (154)
T ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCHHHHEEEEEEECCCH--HHHHHHHHHHHHHHHCCCCC
T ss_conf 888998882899975887432222220220002799954877--78999999999986089973