HHsearch alignment for GI: 254780391 and conserved domain: pfam04364

>pfam04364 DNA_pol3_chi DNA polymerase III chi subunit, HolC. The DNA polymerase III holoenzyme (EC:2.7.7.7) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either either the tau or gamma product of gene dnax, complexed to delta.delta' and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta' allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi.
Probab=100.00  E-value=1.7e-41  Score=270.59  Aligned_cols=135  Identities=27%  Similarity=0.475  Sum_probs=121.4

Q ss_pred             CCEEEEEECCC-CHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf             98279963167-48999999999999779849998299899999999852188233313322477765444220699832
Q gi|254780391|r    1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI   79 (141)
Q Consensus         1 Mt~v~FY~l~~-~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~~~~~~PV~i~~   79 (141)
T Consensus         1 M~~i~FY~l~~~~~~~~~c~L~~k~~~~~~ri~I~~~d~~~~~~lD~~LWt~~~~sFiPH~~~~~~---~~~~~PI~i~~   77 (136)
T pfam04364         1 MTRVDFYHLTRDPLEALACRLAEKALRQGWRVLVRCEDEEQAEALDELLWTFRPDSFLPHGLAGEG---PAAGQPVLLGW   77 (136)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCC---CCCCCCEEEEC
T ss_conf             987899956887199999999999998699189993999999999999857997331444446888---72449918563


Q ss_pred             CCCCCCCCCEEEEEECCCCCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             8667899819999816877821131175799997598989999999999999988998603
Q gi|254780391|r   80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDV  140 (141)
Q Consensus        80 ~~~~~~~~~~~~linl~~~~p~~~~~f~rvieiv~~~d~~~~~~aR~rwk~yk~~G~~~~~  140 (141)
T Consensus        78 ~~~~~~~~-~~vLiNL~~~~~~~~~~f~rvieiv~-~~e~~~~~aR~r~k~Yk~~G~~~~~  136 (136)
T pfam04364        78 DGENPNGH-ADVLINLDGAVPEFASRFERVIEFVD-GDDAAKQAARERWKAYRAAGYELTY  136 (136)
T ss_pred             CCCCCCCC-CCEEEECCCCCCCHHHHHHEEEEEEC-CCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             77667772-79999899988633431207888848-9989999999999999986998859