HHsearch alignment for GI: 254780391 and conserved domain: pfam04364
>pfam04364 DNA_pol3_chi DNA polymerase III chi subunit, HolC. The DNA polymerase III holoenzyme (EC:2.7.7.7) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either either the tau or gamma product of gene dnax, complexed to delta.delta' and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta' allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi.
Probab=100.00 E-value=1.7e-41 Score=270.59 Aligned_cols=135 Identities=27% Similarity=0.475 Sum_probs=121.4
Q ss_pred CCEEEEEECCC-CHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 98279963167-48999999999999779849998299899999999852188233313322477765444220699832
Q gi|254780391|r 1 MRTLLFYRFKN-DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTI 79 (141)
Q Consensus 1 Mt~v~FY~l~~-~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~~~~~~PV~i~~ 79 (141)
T Consensus 1 M~~i~FY~l~~~~~~~~~c~L~~k~~~~~~ri~I~~~d~~~~~~lD~~LWt~~~~sFiPH~~~~~~---~~~~~PI~i~~ 77 (136)
T pfam04364 1 MTRVDFYHLTRDPLEALACRLAEKALRQGWRVLVRCEDEEQAEALDELLWTFRPDSFLPHGLAGEG---PAAGQPVLLGW 77 (136)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCC---CCCCCCEEEEC
T ss_conf 987899956887199999999999998699189993999999999999857997331444446888---72449918563
Q ss_pred CCCCCCCCCEEEEEECCCCCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 8667899819999816877821131175799997598989999999999999988998603
Q gi|254780391|r 80 SSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDV 140 (141)
Q Consensus 80 ~~~~~~~~~~~~linl~~~~p~~~~~f~rvieiv~~~d~~~~~~aR~rwk~yk~~G~~~~~ 140 (141)
T Consensus 78 ~~~~~~~~-~~vLiNL~~~~~~~~~~f~rvieiv~-~~e~~~~~aR~r~k~Yk~~G~~~~~ 136 (136)
T pfam04364 78 DGENPNGH-ADVLINLDGAVPEFASRFERVIEFVD-GDDAAKQAARERWKAYRAAGYELTY 136 (136)
T ss_pred CCCCCCCC-CCEEEECCCCCCCHHHHHHEEEEEEC-CCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 77667772-79999899988633431207888848-9989999999999999986998859