HHsearch alignment of GI: 254780391 and MMDB domain: 1em8_A_
>1em8_A (A:) DNA polymerase III CHI subunit; DNA POL III, heterodimer, clamp-loader, alpha-beta fold, gene regulation; HET: DNA; 2.10A {Escherichia coli}
Probab=100.00 E-value=4.5e-41 Score=267.65 Aligned_cols=135 Identities=19% Similarity=0.355 Sum_probs=122.4
Q ss_pred CCEEEEEECCC--------CHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98279963167--------4899999999999977984999829989999999985218823331332247776544422
Q gi|254780391|r 1 MRTLLFYRFKN--------DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSF 72 (141)
Q Consensus 1 Mt~v~FY~l~~--------~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~~~~~ 72 (141)
||+|+||+|.+ ....++|+|++|++++|+|++|+|+|.++++.||++||+|+++|||||++.+++ ..+.
T Consensus 1 Mt~v~FY~L~~~~~~~~l~~~~~~~c~L~~k~~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFiPH~~~~~~---~~~~ 77 (147)
T 1em8_A 1 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEG---PRGG 77 (147)
T ss_dssp CEEEEEEECSCCCCBTTBCHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHCSTTCCCCEEETTCS---STTC
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC---CCCC
T ss_conf 9846999857986566566799999999999997699799985999999999999629999866189868888---7778
Q ss_pred CEEEEECCCCCCCCCCEEEEEECCCCCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 06998328667899819999816877821131175799997598989999999999999988998603
Q gi|254780391|r 73 QPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDV 140 (141)
Q Consensus 73 ~PV~i~~~~~~~~~~~~~~linl~~~~p~~~~~f~rvieiv~~~d~~~~~~aR~rwk~yk~~G~~~~~ 140 (141)
+||+|+++.+.++.+. ++|||+++..|+++++|+||+||| ++|++.|+.||+|||+||++||++++
T Consensus 78 ~PV~i~~~~~~~~~~~-~vliNl~~~~~~~~~~f~rvie~v-~~d~~~~~~aR~r~k~Yr~~G~~l~~ 143 (147)
T 1em8_A 78 APVEIAWPQKRSSSRR-DILISLRTSFADFATAFTEVVDFV-PYEDSLKQLARERYKAYRVAGFNLNT 143 (147)
T ss_dssp CSEEEECTTSCCCSCC-SEEEECCSSCCGGGGGCSEEEEEE-CSSHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred CCEEEECCCCCCCCCC-EEEEECCCCCCCHHCCCCEEEEEE-CCCHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 8878747877788777-199989988953110478899997-98989999999999999987997411