Query gi|254780391|ref|YP_003064804.1| DNA polymerase III subunit chi [Candidatus Liberibacter asiaticus str. psy62] Match_columns 141 No_of_seqs 108 out of 530 Neff 7.4 Searched_HMMs 33803 Date Wed Jun 1 12:40:01 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780391.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1em8_A DNA polymerase III CHI 100.0 4.5E-41 1.4E-45 267.7 15.4 135 1-140 1-143 (147) 2 >1nkt_A Preprotein translocase 94.4 0.14 4.1E-06 29.8 6.2 111 10-121 16-141 (160) 3 >1c4o_A DNA nucleotide excisio 94.2 0.43 1.3E-05 26.8 9.8 91 7-97 9-107 (255) 4 >2qsd_A Uncharacterized conser 89.5 0.59 1.7E-05 26.0 4.5 55 74-128 7-61 (103) 5 >2fsf_A Preprotein translocase 86.7 2.1 6.2E-05 22.7 5.9 57 6-62 10-68 (191) 6 >2jgn_A DBX, DDX3, ATP-depende 86.4 2.5 7.3E-05 22.2 7.5 85 11-96 30-122 (154) 7 >2oca_A DAR protein, ATP-depen 86.0 1.5 4.6E-05 23.5 4.9 85 12-96 42-135 (221) 8 >3jux_A Protein translocase su 85.0 1.9 5.7E-05 22.9 5.0 121 11-131 17-162 (171) 9 >3i5x_A ATP-dependent RNA heli 84.9 2.9 8.6E-05 21.8 7.2 80 17-96 25-117 (185) 10 >1tf5_A Preprotein translocase 84.1 3 8.7E-05 21.8 5.6 52 11-62 17-68 (151) 11 >2i4i_A ATP-dependent RNA heli 83.5 3.4 9.9E-05 21.5 6.0 86 10-96 14-107 (139) 12 >1hv8_A Putative ATP-dependent 83.0 3.5 0.0001 21.3 8.9 107 12-121 14-139 (156) 13 >1fuk_A Eukaryotic initiation 80.2 4.4 0.00013 20.7 7.7 105 11-117 15-138 (165) 14 >2eyq_A TRCF, transcription-re 79.4 4.7 0.00014 20.6 6.4 121 13-134 14-156 (158) 15 >1wp9_A ATP-dependent RNA heli 79.2 4.1 0.00012 21.0 4.9 86 11-96 16-119 (168) 16 >2p6n_A ATP-dependent RNA heli 71.6 7.6 0.00023 19.3 7.7 118 12-134 41-177 (191) 17 >1t5i_A C_terminal domain of A 68.5 8.9 0.00026 18.9 7.2 83 11-95 16-106 (172) 18 >1xti_A Probable ATP-dependent 67.3 9.4 0.00028 18.8 8.7 118 11-132 16-152 (172) 19 >3i32_A Heat resistant RNA dep 64.3 11 0.00032 18.4 11.3 107 11-119 13-138 (180) 20 >2j0s_A ATP-dependent RNA heli 64.3 11 0.00032 18.4 8.8 113 13-132 19-152 (166) 21 >2v6i_A RNA helicase; membrane 61.5 12 0.00036 18.1 4.2 82 20-101 23-108 (154) 22 >2ipc_A Preprotein translocase 60.5 13 0.00037 18.0 4.7 44 7-50 13-56 (236) 23 >2v1x_A ATP-dependent DNA heli 60.3 13 0.00038 18.0 9.0 86 11-96 13-108 (138) 24 >2eyq_A TRCF, transcription-re 59.7 7.6 0.00023 19.3 2.8 36 16-51 17-52 (103) 25 >3gfp_A DEAD box protein 5; mR 59.1 13 0.00039 17.9 10.3 83 12-96 23-113 (189) 26 >1s2m_A Putative ATP-dependent 55.0 16 0.00046 17.4 7.2 118 10-134 15-153 (173) 27 >2wv9_A Flavivirin protease NS 52.4 17 0.00051 17.2 3.7 76 20-95 25-104 (159) 28 >2au3_A DNA primase; zinc ribb 49.2 19 0.00057 16.9 4.1 38 102-140 59-96 (125) 29 >2jlq_A Serine protease subuni 48.0 20 0.0006 16.8 4.0 60 21-80 25-86 (158) 30 >1yks_A Genome polyprotein [co 46.7 21 0.00063 16.6 7.8 85 21-105 25-113 (157) 31 >2is6_A DNA helicase II; hydro 46.6 21 0.00063 16.6 8.0 88 3-95 34-127 (232) 32 >2d7d_A Uvrabc system protein 46.5 21 0.00063 16.6 13.8 110 10-119 12-144 (187) 33 >3eaq_A Heat resistant RNA dep 46.5 21 0.00063 16.6 9.0 84 10-95 15-106 (184) 34 >2jmk_A Hypothetical protein T 45.6 9.6 0.00028 18.7 1.4 28 113-140 82-109 (111) 35 >1gku_B Reverse gyrase, TOP-RG 44.2 19 0.00055 17.0 2.7 69 3-80 2-76 (249) 36 >1xkn_A Putative peptidyl-argi 42.9 24 0.00072 16.3 3.4 33 15-48 26-58 (104) 37 >1oyw_A RECQ helicase, ATP-dep 42.3 25 0.00073 16.2 7.3 85 10-96 11-103 (133) 38 >2z0m_A 337AA long hypothetica 38.4 26 0.00078 16.1 2.7 110 6-122 8-136 (145) 39 >2vbc_A Dengue 4 NS3 FULL-leng 38.3 29 0.00085 15.8 4.2 75 21-96 25-103 (119) 40 >2db3_A ATP-dependent RNA heli 32.5 36 0.0011 15.3 9.4 122 12-138 16-156 (163) 41 >1t6t_1 Putative protein; stru 32.4 36 0.0011 15.3 3.8 39 100-139 56-94 (118) 42 >3h1t_A Type I site-specific r 30.8 38 0.0011 15.1 6.3 74 24-97 65-156 (220) 43 >3fmp_B ATP-dependent RNA heli 25.6 17 0.0005 17.2 0.0 78 19-96 324-409 (479) 44 >2i7x_A Protein CFT2; polyaden 24.5 49 0.0015 14.4 3.6 40 12-51 7-46 (444) 45 >2f1r_A Molybdopterin-guanine 24.4 50 0.0015 14.4 3.6 59 1-59 1-61 (121) 46 >1yz4_A DUSP15, dual specifici 23.0 53 0.0016 14.2 4.0 25 13-37 69-93 (160) 47 >1wrm_A Dual specificity phosp 22.8 53 0.0016 14.2 3.8 26 13-38 68-93 (165) 48 >2wv9_A Flavivirin protease NS 22.4 54 0.0016 14.2 5.7 48 13-60 24-71 (243) 49 >1fuu_A Yeast initiation facto 22.4 21 0.00063 16.6 0.0 82 27-108 258-349 (394) 50 >2q05_A Late protein H1, dual 21.8 56 0.0017 14.1 3.8 28 87-114 72-99 (195) 51 >2esb_A Dual specificity prote 21.6 56 0.0017 14.1 3.8 24 14-37 83-106 (188) 52 >1b73_A Glutamate racemase; is 21.5 57 0.0017 14.1 3.7 39 13-51 47-85 (135) No 1 >>1em8_A DNA polymerase III CHI subunit; DNA POL III, heterodimer, clamp-loader, alpha-beta fold, gene regulation; HET: DNA; 2.10A {Escherichia coli} (A:) Probab=100.00 E-value=4.5e-41 Score=267.65 Aligned_cols=135 Identities=19% Similarity=0.355 Sum_probs=122.4 Q ss_pred CCEEEEEECCC--------CHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 98279963167--------4899999999999977984999829989999999985218823331332247776544422 Q gi|254780391|r 1 MRTLLFYRFKN--------DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSF 72 (141) Q Consensus 1 Mt~v~FY~l~~--------~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~~~~~ 72 (141) ||+|+||+|.+ ....++|+|++|++++|+|++|+|+|.++++.||++||+|+++|||||++.+++ ..+. T Consensus 1 Mt~v~FY~L~~~~~~~~l~~~~~~~c~L~~k~~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFiPH~~~~~~---~~~~ 77 (147) T 1em8_A 1 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEG---PRGG 77 (147) T ss_dssp CEEEEEEECSCCCCBTTBCHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHCSTTCCCCEEETTCS---STTC T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC---CCCC T ss_conf 9846999857986566566799999999999997699799985999999999999629999866189868888---7778 Q ss_pred CEEEEECCCCCCCCCCEEEEEECCCCCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 06998328667899819999816877821131175799997598989999999999999988998603 Q gi|254780391|r 73 QPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDV 140 (141) Q Consensus 73 ~PV~i~~~~~~~~~~~~~~linl~~~~p~~~~~f~rvieiv~~~d~~~~~~aR~rwk~yk~~G~~~~~ 140 (141) +||+|+++.+.++.+. ++|||+++..|+++++|+||+||| ++|++.|+.||+|||+||++||++++ T Consensus 78 ~PV~i~~~~~~~~~~~-~vliNl~~~~~~~~~~f~rvie~v-~~d~~~~~~aR~r~k~Yr~~G~~l~~ 143 (147) T 1em8_A 78 APVEIAWPQKRSSSRR-DILISLRTSFADFATAFTEVVDFV-PYEDSLKQLARERYKAYRVAGFNLNT 143 (147) T ss_dssp CSEEEECTTSCCCSCC-SEEEECCSSCCGGGGGCSEEEEEE-CSSHHHHHHHHHHHHHHHHTTEEEEE T ss_pred CCEEEECCCCCCCCCC-EEEEECCCCCCCHHCCCCEEEEEE-CCCHHHHHHHHHHHHHHHHCCCCCEE T ss_conf 8878747877788777-199989988953110478899997-98989999999999999987997411 No 2 >>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} (A:427-523,A:579-641) Probab=94.38 E-value=0.14 Score=29.80 Aligned_cols=111 Identities=10% Similarity=0.022 Sum_probs=68.7 Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC----CCCCCEEEEECCCCCCC Q ss_conf 67489999999999997798499982998999999998521882333133224777654----44220699832866789 Q gi|254780391|r 10 KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD----FSSFQPVLLTISSLNAN 85 (141) Q Consensus 10 ~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~----~~~~~PV~i~~~~~~~~ 85 (141) .+.....++.++.+....|.+++|+|.+.++++.|-+.|........+=|+-.....-. .-..-.|++++..-. . T Consensus 16 ~~~k~~~~~~~i~~~~~~~~kvlIf~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~vlv~t~~~~-~ 94 (160) T 1nkt_A 16 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRGGVTVATNMAG-R 94 (160) T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTTCEEEEETTCS-T T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCC-C T ss_conf 899999999999999964997799840198899999999876981532100104656767862789871899722335-8 Q ss_pred CCCEEEEEECC--CCCCCHHHC------C---CEEEEEECCCCHHHH Q ss_conf 98199998168--778211311------7---579999759898999 Q gi|254780391|r 86 TSTIRFLVDEA--SMHIGDVDY------Y---EKVVFIINTDDQGSL 121 (141) Q Consensus 86 ~~~~~~linl~--~~~p~~~~~------f---~rvieiv~~~d~~~~ 121 (141) +-++..+|+.. .....+.++ . ..++-++...|.... T Consensus 95 Gid~~~Vi~~d~p~~~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~ 141 (160) T 1nkt_A 95 GTDGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMR 141 (160) T ss_dssp TCCSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHHH T ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCEEEHHHCCHHHHH T ss_conf 74773896454431488999872653468999744540231448998 No 3 >>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hyperthermostable protein; HET: DNA BOG; 1.50A {Thermus thermophilus} (A:410-664) Probab=94.19 E-value=0.43 Score=26.84 Aligned_cols=91 Identities=11% Similarity=0.075 Sum_probs=67.0 Q ss_pred EECCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC------CCCCCEEEEECC Q ss_conf 63167489999999999997798499982998999999998521882333133224777654------442206998328 Q gi|254780391|r 7 YRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD------FSSFQPVLLTIS 80 (141) Q Consensus 7 Y~l~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~------~~~~~PV~i~~~ 80 (141) ++-.......+..++.+....+.+++|+|.....++.|-++|+........=|+-.....-. ......|+++++ T Consensus 9 ~~~~~~~~~~ll~~i~~~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~~~~~hg~~~~~~R~~i~~~F~~~~~~vLVaT~ 88 (255) T 1c4o_A 9 VKPTENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN 88 (255) T ss_dssp EECSTTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCEEEEEEEC T ss_conf 25444646899999999984598089995573069999999987798246426665403567788775068637998531 Q ss_pred --CCCCCCCCEEEEEECCC Q ss_conf --66789981999981687 Q gi|254780391|r 81 --SLNANTSTIRFLVDEAS 97 (141) Q Consensus 81 --~~~~~~~~~~~linl~~ 97 (141) .+..+-.++..+|+..+ T Consensus 89 ~l~~GiDi~~v~~VI~~d~ 107 (255) T 1c4o_A 89 LLREGLDIPEVSLVAILDA 107 (255) T ss_dssp CCCTTCCCTTEEEEEETTT T ss_pred CCCCCCCCCCCCEEEEECC T ss_conf 4554311233428998526 No 4 >>2qsd_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, nysgrc; 2.50A {Idiomarina loihiensis} (A:64-166) Probab=89.53 E-value=0.59 Score=26.03 Aligned_cols=55 Identities=13% Similarity=0.221 Sum_probs=44.7 Q ss_pred EEEEECCCCCCCCCCEEEEEECCCCCCCHHHCCCEEEEEECCCCHHHHHHHHHHH Q ss_conf 6998328667899819999816877821131175799997598989999999999 Q gi|254780391|r 74 PVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHW 128 (141) Q Consensus 74 PV~i~~~~~~~~~~~~~~linl~~~~p~~~~~f~rvieiv~~~d~~~~~~aR~rw 128 (141) -|-++......+...-++.||++.=.|..|..+-+...+|-.+-.++|+.|+.+| T Consensus 7 ~I~l~~~~~~~~~~~kL~FVNLGGY~~~~~~E~H~f~LvVA~~~~eAK~~Ak~~~ 61 (103) T 2qsd_A 7 RIHLTSEAHEKPEEKRLYFVNFGGYFPNKLAEYHDFTVVVADSPQSAKQLARAQF 61 (103) T ss_dssp EEEEESCC---CCSSEEEEEECC--------CCCSEEEEEESSHHHHHHHHHHTC T ss_pred EEEEEECCCCCCCCCCEEEEEECCCCCCCHHHHHEEEEEEECCHHHHHHHHHHHH T ss_conf 8999866777787772799980574899510313655899789999999999886 No 5 >>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* (A:408-598) Probab=86.69 E-value=2.1 Score=22.70 Aligned_cols=57 Identities=11% Similarity=-0.056 Sum_probs=44.7 Q ss_pred EEECC--CCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 96316--7489999999999997798499982998999999998521882333133224 Q gi|254780391|r 6 FYRFK--NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62 (141) Q Consensus 6 FY~l~--~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~ 62 (141) +|... +....++..++.+....+.|++|+|++.+.++.|-++|=+..-....=|+-. T Consensus 10 ~~~~~~~~~K~~~L~~ll~~~~~~~~kviVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~ 68 (191) T 2fsf_A 10 DLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKF 68 (191) T ss_dssp CEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTC T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHH T ss_conf 27677358999999999999997089669974688889999999997485688997751 No 6 >>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, acetylation, ATP-binding, DNA-binding; 1.91A {Homo sapiens} (A:1-154) Probab=86.36 E-value=2.5 Score=22.25 Aligned_cols=85 Identities=20% Similarity=0.208 Sum_probs=56.1 Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC------CCCCCEEEEECCC--C Q ss_conf 7489999999999997798499982998999999998521882333133224777654------4422069983286--6 Q gi|254780391|r 11 NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD------FSSFQPVLLTISS--L 82 (141) Q Consensus 11 ~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~------~~~~~PV~i~~~~--~ 82 (141) .+....+.+++.+.. .+.+++|+|.+.++++.+-..|.........=|+-.....-. .....+|+++++. . T Consensus 30 ~~k~~~l~~~l~~~~-~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~~~~~f~~~~~~vlv~Td~~~~ 108 (154) T 2jgn_A 30 SDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAAR 108 (154) T ss_dssp GGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC---- T ss_pred HHHHHHHHHHHHHCC-CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHCC T ss_conf 789999999998508-8997899984663125677766532786321002210379999997862598437742100010 Q ss_pred CCCCCCEEEEEECC Q ss_conf 78998199998168 Q gi|254780391|r 83 NANTSTIRFLVDEA 96 (141) Q Consensus 83 ~~~~~~~~~linl~ 96 (141) ..+..++.++|+.+ T Consensus 109 G~d~~~v~~Vi~~~ 122 (154) T 2jgn_A 109 GLDISNVKHVINFD 122 (154) T ss_dssp --CCCSBSEEEESS T ss_pred HHEECCCCEEEEEC T ss_conf 10342654356606 No 7 >>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} (A:290-510) Probab=85.96 E-value=1.5 Score=23.49 Aligned_cols=85 Identities=7% Similarity=-0.046 Sum_probs=52.2 Q ss_pred CHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-------CCCCCEEEEECC--CC Q ss_conf 489999999999997798499982998999999998521882333133224777654-------442206998328--66 Q gi|254780391|r 12 DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD-------FSSFQPVLLTIS--SL 82 (141) Q Consensus 12 ~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~-------~~~~~PV~i~~~--~~ 82 (141) .....++.++.+....|.+++|+|.....++.|-+.|=........=|+-....... .....-+++++. .. T Consensus 42 ~k~~~l~~~i~~~~~~~~k~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 121 (221) T 2oca_A 42 KRNKWIAKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST 121 (221) T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEEEEECHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECHHHC T ss_conf 23467777653333136638999844530001002233444318999678867889999999864888769999053104 Q ss_pred CCCCCCEEEEEECC Q ss_conf 78998199998168 Q gi|254780391|r 83 NANTSTIRFLVDEA 96 (141) Q Consensus 83 ~~~~~~~~~linl~ 96 (141) ..+-.++..+|+.. T Consensus 122 Gid~~~~~~VI~~~ 135 (221) T 2oca_A 122 GISVKNLHHVVLAH 135 (221) T ss_dssp SCCCCSEEEEEESS T ss_pred EECCCCCCEEEEEC T ss_conf 65445578999967 No 8 >>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* (A:441-611) Probab=85.02 E-value=1.9 Score=22.93 Aligned_cols=121 Identities=12% Similarity=0.048 Sum_probs=67.0 Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC----CCCCCCEEEEECCC--CCC Q ss_conf 748999999999999779849998299899999999852188233313322477765----44422069983286--678 Q gi|254780391|r 11 NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG----DFSSFQPVLLTISS--LNA 84 (141) Q Consensus 11 ~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~----~~~~~~PV~i~~~~--~~~ 84 (141) +.....+.+++.+....+.+++|+|...+.++.|.+.|=...-..-.=|+-.....- ..-....|+++++. ... T Consensus 17 ~~k~~~l~~~l~~~~~~~~~~iIF~~~~~~~e~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ilv~T~~~~~G~ 96 (171) T 3jux_A 17 KEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKGMVTIATNMAGRGT 96 (171) T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTTCEEEEETTTTTTC T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEHHCCCCC T ss_conf 99999889999998753883799950566799999999975846877615318788898886238760797100103678 Q ss_pred CCCC--------EEEEEECCCC--CCCHH---------HCCCEEEEEECCCCHHHHHHHHHHHHHH Q ss_conf 9981--------9999816877--82113---------1175799997598989999999999999 Q gi|254780391|r 85 NTST--------IRFLVDEASM--HIGDV---------DYYEKVVFIINTDDQGSLEWGRAHWRSL 131 (141) Q Consensus 85 ~~~~--------~~~linl~~~--~p~~~---------~~f~rvieiv~~~d~~~~~~aR~rwk~y 131 (141) +... +...+|.... .-.+. .+=.+++-+++..++.......++-+.. T Consensus 97 d~~~v~~V~~~~~~~~i~~d~p~~~~~yiQr~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~ 162 (171) T 3jux_A 97 DIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKV 162 (171) T ss_dssp CCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHH T ss_pred CCCCCCHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHCCHHHHHH T ss_conf 555551088808976988412642776666505201368987515863158528876210112333 No 9 >>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, helicase, hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* (A:302-486) Probab=84.94 E-value=2.9 Score=21.83 Aligned_cols=80 Identities=6% Similarity=-0.063 Sum_probs=43.6 Q ss_pred HHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC---------CCCCCEEEEECCC--CC Q ss_conf 9999999997--798499982998999999998521882333133224777654---------4422069983286--67 Q gi|254780391|r 17 LLVLLQDEYE--KGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD---------FSSFQPVLLTISS--LN 83 (141) Q Consensus 17 ~~~L~~K~~~--~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~---------~~~~~PV~i~~~~--~~ 83 (141) +..+...... .+.+++|+|+..+.++.|-++|...-+..+-...+.++-+.. ......|+++++. .. T Consensus 25 ~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G 104 (185) T 3i5x_A 25 VEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARG 104 (185) T ss_dssp HHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSS T ss_pred HHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEHHCCC T ss_conf 88888888862367747998320135577776554210122110013678727766677765320100015774210046 Q ss_pred CCCCCEEEEEECC Q ss_conf 8998199998168 Q gi|254780391|r 84 ANTSTIRFLVDEA 96 (141) Q Consensus 84 ~~~~~~~~linl~ 96 (141) .+...+..+|+.+ T Consensus 105 id~~~~~~Vi~~~ 117 (185) T 3i5x_A 105 MDFPNVHEVLQIG 117 (185) T ss_dssp CCCTTCCEEEEES T ss_pred CCCCCCCEEEEEC T ss_conf 5767788899969 No 10 >>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} (A:399-549) Probab=84.10 E-value=3 Score=21.79 Aligned_cols=52 Identities=10% Similarity=-0.010 Sum_probs=43.6 Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 7489999999999997798499982998999999998521882333133224 Q gi|254780391|r 11 NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62 (141) Q Consensus 11 ~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~ 62 (141) .+....++.++.+....+.+++|+|...+.++.|-+.|=...-....=|+-. T Consensus 17 ~~k~~~l~~~i~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~g~~~~~~h~~~ 68 (151) T 1tf5_A 17 EGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKN 68 (151) T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSC T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHHHCCC T ss_conf 9999999999999874466527741487889999999987697333242462 No 11 >>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural genomics consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} (A:246-384) Probab=83.50 E-value=3.4 Score=21.45 Aligned_cols=86 Identities=20% Similarity=0.190 Sum_probs=55.9 Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC------CCCCCCEEEEECC--C Q ss_conf 6748999999999999779849998299899999999852188233313322477765------4442206998328--6 Q gi|254780391|r 10 KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG------DFSSFQPVLLTIS--S 81 (141) Q Consensus 10 ~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~------~~~~~~PV~i~~~--~ 81 (141) ..+....+..++.+.. .+.+++|+|++.+.++.|.+.|=........=|+-.....- -......|+++++ . T Consensus 14 ~~~k~~~l~~~l~~~~-~~~k~iIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~~~~~f~~~~~~ilv~t~~~~ 92 (139) T 2i4i_A 14 ESDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAA 92 (139) T ss_dssp GGGHHHHHHHHHHTCC-TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHH T ss_pred CCCCHHHHCCCCCCCC-CCCCEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCHHH T ss_conf 2220011012221123-566304776303107899999986897699972765599999998740368850567410543 Q ss_pred CCCCCCCEEEEEECC Q ss_conf 678998199998168 Q gi|254780391|r 82 LNANTSTIRFLVDEA 96 (141) Q Consensus 82 ~~~~~~~~~~linl~ 96 (141) ...+-.++..+|+.. T Consensus 93 ~Gid~~~v~~Vi~~d 107 (139) T 2i4i_A 93 RGLDISNVKHVINFD 107 (139) T ss_dssp TTSCCCCEEEEEESS T ss_pred CCCCCCCCCEEEEEC T ss_conf 577866888899958 No 12 >>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} (A:212-367) Probab=83.00 E-value=3.5 Score=21.33 Aligned_cols=107 Identities=16% Similarity=0.059 Sum_probs=59.4 Q ss_pred CHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC------CCCCCCEEEEECCC--CC Q ss_conf 48999999999999779849998299899999999852188233313322477765------44422069983286--67 Q gi|254780391|r 12 DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG------DFSSFQPVLLTISS--LN 83 (141) Q Consensus 12 ~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~------~~~~~~PV~i~~~~--~~ 83 (141) +....+..++ -..+.+++|+|.+.+.++.+-+.|=...-....=|+-.....- -......|+++++. .. T Consensus 14 ~k~~~l~~ll---~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~G 90 (156) T 1hv8_A 14 ERFEALCRLL---KNKEFYGLVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVXSRG 90 (156) T ss_dssp GHHHHHHHHH---CSTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHH T ss_pred CCCCCCCCCC---CCCCCCCCCEECCCHHHHHHHHHHHHCCCCEEECCCCCCHHHCCCCCCCCCCCCEEEEEEEEEHHCC T ss_conf 2200011110---2456554201012014589999864048612210124561211232112357851148984301122 Q ss_pred CCCCCEEEEEECCC-CCCC-H---HHCC------CEEEEEECCCCHHHH Q ss_conf 89981999981687-7821-1---3117------579999759898999 Q gi|254780391|r 84 ANTSTIRFLVDEAS-MHIG-D---VDYY------EKVVFIINTDDQGSL 121 (141) Q Consensus 84 ~~~~~~~~linl~~-~~p~-~---~~~f------~rvieiv~~~d~~~~ 121 (141) .+-+++.++++.+. ..+. + .++. ..++-+++..|.... T Consensus 91 idip~v~~vi~~~~p~~~~~~~qr~gR~gR~g~~g~~i~~~~~~d~~~~ 139 (156) T 1hv8_A 91 IDVNDLNCVINYHLPQNPESYXHRIGRTGRAGKKGKAISIINRREYKKL 139 (156) T ss_dssp CCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHH T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHH T ss_conf 5755788899958999999999885307759995289999877899999 No 13 >>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} (A:) Probab=80.19 E-value=4.4 Score=20.72 Aligned_cols=105 Identities=10% Similarity=0.011 Sum_probs=62.7 Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC------CCCCCCCEEEEECC--CC Q ss_conf 74899999999999977984999829989999999985218823331332247776------54442206998328--66 Q gi|254780391|r 11 NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE------GDFSSFQPVLLTIS--SL 82 (141) Q Consensus 11 ~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~------~~~~~~~PV~i~~~--~~ 82 (141) +.....+.+|+++- .+.+++|+|.+...++.|-+.|....-....=|+-..... .-......|+++++ .. T Consensus 15 ~~k~~~L~~ll~~~--~~~k~iVF~~s~~~~~~l~~~L~~~g~~~~~~h~~~~~~~R~~~~~~f~~g~~~iLv~Td~~~r 92 (165) T 1fuk_A 15 EYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLAR 92 (165) T ss_dssp GGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTT T ss_pred HHHHHHHHHHHHCC--CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 78999999999708--9980999988589999999999857997899857999899999999997089868986120014 Q ss_pred CCCCCCEEEEEECCC--CCCCHHHCCC---------EEEEEECCCC Q ss_conf 789981999981687--7821131175---------7999975989 Q gi|254780391|r 83 NANTSTIRFLVDEAS--MHIGDVDYYE---------KVVFIINTDD 117 (141) Q Consensus 83 ~~~~~~~~~linl~~--~~p~~~~~f~---------rvieiv~~~d 117 (141) ..+-.++...||... ....++.+.. .++-++...| T Consensus 93 Gid~~~v~~VInyd~P~~~~~yi~R~GR~~R~g~~g~~i~~~~~~e 138 (165) T 1fuk_A 93 GIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNED 138 (165) T ss_dssp TCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTT T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCEEEEEEECHHH T ss_conf 6647773488872699999997057211775899569999987899 No 14 >>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} (A:784-941) Probab=79.43 E-value=4.7 Score=20.57 Aligned_cols=121 Identities=10% Similarity=0.009 Sum_probs=71.8 Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCC-CCCCCC-CCCCCCCCC------CCCCCCCEEEEECC--CC Q ss_conf 899999999999977984999829989999999985218-823331-332247776------54442206998328--66 Q gi|254780391|r 13 WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTW-KKDGFL-PHGVDVGDE------GDFSSFQPVLLTIS--SL 82 (141) Q Consensus 13 ~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~-~~~sFi-PH~~~~~~~------~~~~~~~PV~i~~~--~~ 82 (141) ....+...+.+....+.+++|+|...+.++.+.+.|... +..+.. =|+-..... .-......|+++++ .+ T Consensus 14 ~~~~~~~~i~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~ 93 (158) T 2eyq_A 14 DSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIET 93 (158) T ss_dssp CHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGG T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEECCHHHHC T ss_conf 10446999999999659858996567645899999998688872887416788899999999997698656634355530 Q ss_pred CCCCCCEEEEEECC-CCCC-CHH-HCCCE---------EEEEECCCCHHHHHHHHHHHHHHHHC Q ss_conf 78998199998168-7782-113-11757---------99997598989999999999999988 Q gi|254780391|r 83 NANTSTIRFLVDEA-SMHI-GDV-DYYEK---------VVFIINTDDQGSLEWGRAHWRSLKNS 134 (141) Q Consensus 83 ~~~~~~~~~linl~-~~~p-~~~-~~f~r---------vieiv~~~d~~~~~~aR~rwk~yk~~ 134 (141) ..+-+++.++++.. +..+ ..+ ++-.| ++-++ ..++.....++++.+..++. T Consensus 94 GiDip~v~~vi~~~~p~~~~~~~~Q~~GR~~R~~~~g~~~~~~-~~~~~~~~~~~~r~~~~~~~ 156 (158) T 2eyq_A 94 GIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT-PHPKAMTTDAQKRLEAIASL 156 (158) T ss_dssp GSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEE-CCGGGSCHHHHHHHHHHTTC T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEE-CCCCCCCHHHHHHHHHHHHC T ss_conf 3668887368870565332367888751431588887399997-79877898899999999971 No 15 >>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombination, hydrolase; 2.90A {Pyrococcus furiosus dsm 3638} (A:197-211,A:342-494) Probab=79.24 E-value=4.1 Score=20.96 Aligned_cols=86 Identities=13% Similarity=0.137 Sum_probs=50.8 Q ss_pred CCHHHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHC--CCCCCCCCCCCCCCCCC---C---------CCCCCE Q ss_conf 74899999999999977--98499982998999999998521--88233313322477765---4---------442206 Q gi|254780391|r 11 NDWEYNLLVLLQDEYEK--GKRVSVQCGSERVRDSLNEYLWT--WKKDGFLPHGVDVGDEG---D---------FSSFQP 74 (141) Q Consensus 11 ~~~~~~~~~L~~K~~~~--~~ri~I~~~d~~~~~~lD~~LW~--~~~~sFiPH~~~~~~~~---~---------~~~~~P 74 (141) ++....+..++.+.+.. +.+++|+|++.++++.+.+.|=. ++...+.++.......+ . ...... T Consensus 16 ~~k~~~l~~~i~~~~~~~~~~k~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~f~~g~~~ 95 (168) T 1wp9_A 16 HPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN 95 (168) T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCS T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCC T ss_conf 35899999998888740677531110102888999999986469743786135545467788999999999999779998 Q ss_pred EEEECCC--CCCCCCCEEEEEECC Q ss_conf 9983286--678998199998168 Q gi|254780391|r 75 VLLTISS--LNANTSTIRFLVDEA 96 (141) Q Consensus 75 V~i~~~~--~~~~~~~~~~linl~ 96 (141) |+|+++. +..+-.++..+|+.+ T Consensus 96 iLi~T~~l~~Gidlp~~~~VI~~~ 119 (168) T 1wp9_A 96 VLVATSVGEEGLDVPEVDLVVFYE 119 (168) T ss_dssp EEEECGGGGGGGGSTTCCEEEESS T ss_pred EEEECCCCCCCCCCCCCCEEEEEC T ss_conf 998844027035614598999948 No 16 >>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; 2.60A {Homo sapiens} (A:) Probab=71.56 E-value=7.6 Score=19.32 Aligned_cols=118 Identities=17% Similarity=0.038 Sum_probs=65.8 Q ss_pred CHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC------CCCCCCCEEEEECC--CCC Q ss_conf 4899999999999977984999829989999999985218823331332247776------54442206998328--667 Q gi|254780391|r 12 DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE------GDFSSFQPVLLTIS--SLN 83 (141) Q Consensus 12 ~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~------~~~~~~~PV~i~~~--~~~ 83 (141) +....+.+++ -..+.+++|+|...+.++.|...|....-....=|+-..... .-......|+++++ ... T Consensus 41 ~k~~~l~~~l---~~~~~~~lIF~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLi~T~~~~~G 117 (191) T 2p6n_A 41 AKMVYLLECL---QKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKG 117 (191) T ss_dssp GHHHHHHHHH---TTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTT T ss_pred HHHHHHHHHH---HHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEECCHHHHHH T ss_conf 9999999999---7689989999887799999999876428863334555420000022221223111202230123210 Q ss_pred CCCCCEEEEEECCC--CCCCHHH---------CCCEEEEEECCCCHHHHHHHHHHHHHHHHC Q ss_conf 89981999981687--7821131---------175799997598989999999999999988 Q gi|254780391|r 84 ANTSTIRFLVDEAS--MHIGDVD---------YYEKVVFIINTDDQGSLEWGRAHWRSLKNS 134 (141) Q Consensus 84 ~~~~~~~~linl~~--~~p~~~~---------~f~rvieiv~~~d~~~~~~aR~rwk~yk~~ 134 (141) .+-+++...|+.+. ....+.+ +-..++-++.+.+++. ..+..-+.+... T Consensus 118 idl~~v~~Vi~~~~p~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 177 (191) T 2p6n_A 118 LDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDES--VLMDLKALLLEA 177 (191) T ss_dssp CCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHH--HHHHHHHHHHHT T ss_pred CCCCCCCHHHHCCCCCCHHHHHHHCCCCCCCCCCEEEEEEECCCCHHH--HHHHHHHHHHHC T ss_conf 122554201115855479999751675774899638999988822699--999999999984 No 17 >>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} (A:) Probab=68.50 E-value=8.9 Score=18.92 Aligned_cols=83 Identities=13% Similarity=0.008 Sum_probs=52.4 Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC------CCCCCCCEEEEECCC--C Q ss_conf 74899999999999977984999829989999999985218823331332247776------544422069983286--6 Q gi|254780391|r 11 NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE------GDFSSFQPVLLTISS--L 82 (141) Q Consensus 11 ~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~------~~~~~~~PV~i~~~~--~ 82 (141) .+....+..|+... .+.+++|+|.....++.|-+.|-...-..-.=|+-..... .-......|+++++. . T Consensus 16 ~~K~~~l~~ll~~~--~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~er~~~~~~F~~g~~~ilv~T~~~~~ 93 (172) T 1t5i_A 16 NEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 93 (172) T ss_dssp GGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCST T ss_pred HHHHHHHHHHHHHC--CCCCEEEEEEEECHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEECHHHHHH T ss_conf 99999999999727--8884899970030225556776520344210002220233210022322110101212177775 Q ss_pred CCCCCCEEEEEEC Q ss_conf 7899819999816 Q gi|254780391|r 83 NANTSTIRFLVDE 95 (141) Q Consensus 83 ~~~~~~~~~linl 95 (141) ..+-..+...||. T Consensus 94 Gid~~~~~~vi~~ 106 (172) T 1t5i_A 94 GMDIERVNIAFNY 106 (172) T ss_dssp TCCGGGCSEEEES T ss_pred HHHCCCCCHHHHC T ss_conf 5530354022111 No 18 >>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} (A:220-391) Probab=67.33 E-value=9.4 Score=18.77 Aligned_cols=118 Identities=9% Similarity=-0.033 Sum_probs=65.3 Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC------CCCCCCCEEEEECCC--C Q ss_conf 74899999999999977984999829989999999985218823331332247776------544422069983286--6 Q gi|254780391|r 11 NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE------GDFSSFQPVLLTISS--L 82 (141) Q Consensus 11 ~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~------~~~~~~~PV~i~~~~--~ 82 (141) .+....++.|+.+. .+.+++|+|++...++.|-..|=...-..-.=|+-..... .-.....+|+++++. . T Consensus 16 ~~K~~~l~~ll~~~--~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~R~~~~~~F~~g~~~vlv~T~~~~~ 93 (172) T 1xti_A 16 NEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 93 (172) T ss_dssp GGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSS T ss_pred HHHHHHHHHHHHHC--CCCEEEEEEEHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCEEEEEECCCCC T ss_conf 14788999887620--2541588862045699999999856997699731364000145777765213128983035456 Q ss_pred CCCCCCEEEEEECCCCCCC--HHHC---------CCEEEEEECCCCHHHHHHHHHHHHHHH Q ss_conf 7899819999816877821--1311---------757999975989899999999999999 Q gi|254780391|r 83 NANTSTIRFLVDEASMHIG--DVDY---------YEKVVFIINTDDQGSLEWGRAHWRSLK 132 (141) Q Consensus 83 ~~~~~~~~~linl~~~~p~--~~~~---------f~rvieiv~~~d~~~~~~aR~rwk~yk 132 (141) ..+-..+..+||.+..... +..+ -..++-++.. +......+.-.+.+. T Consensus 94 GiD~~~v~~VI~~~~p~~~~~yiqr~GR~gR~g~~g~~i~~~~~--~~~~~~~~~i~~~~~ 152 (172) T 1xti_A 94 GMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSD--ENDAKILNDVQDRFE 152 (172) T ss_dssp CBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECS--HHHHHHHHHHHHHTT T ss_pred CCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCEEEEEEECC--HHHHHHHHHHHHHHC T ss_conf 66778898999979999999988422424679894489999875--138999999999974 No 19 >>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP- binding, helicase, nucleotide-binding; 2.80A {Thermus thermophilus HB27} (A:1-180) Probab=64.33 E-value=11 Score=18.42 Aligned_cols=107 Identities=12% Similarity=0.008 Sum_probs=62.4 Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC------CCCCCEEEEECCC--C Q ss_conf 7489999999999997798499982998999999998521882333133224777654------4422069983286--6 Q gi|254780391|r 11 NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD------FSSFQPVLLTISS--L 82 (141) Q Consensus 11 ~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~------~~~~~PV~i~~~~--~ 82 (141) ......+..++++. .+.+++|+|.+...++.|-+.|....-..-.=|+-.....-. ......|+++++. . T Consensus 13 ~~K~~~l~~~i~~~--~~~k~lVf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vli~t~~~~~ 90 (180) T 3i32_A 13 RGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAAR 90 (180) T ss_dssp SSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTC T ss_pred HHHHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHH T ss_conf 77999999999857--9896999989689999999999868996899978997677666776531023223321555541 Q ss_pred CCCC--CCEEEEEECCCCCCCHHHC---C------CEEEEEECCCCHH Q ss_conf 7899--8199998168778211311---7------5799997598989 Q gi|254780391|r 83 NANT--STIRFLVDEASMHIGDVDY---Y------EKVVFIINTDDQG 119 (141) Q Consensus 83 ~~~~--~~~~~linl~~~~p~~~~~---f------~rvieiv~~~d~~ 119 (141) ..+- ..+.++.+.......+.++ . ..++-+++..+.. T Consensus 91 Gldi~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 138 (180) T 3i32_A 91 GLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERR 138 (180) T ss_dssp STTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHH T ss_pred CCCCCCHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECHHHHH T ss_conf 010231022011379710447878727266367874279985699998 No 20 >>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} (A:245-410) Probab=64.28 E-value=11 Score=18.41 Aligned_cols=113 Identities=13% Similarity=0.032 Sum_probs=68.7 Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC------CCCCCCCEEEEECC--CCCC Q ss_conf 899999999999977984999829989999999985218823331332247776------54442206998328--6678 Q gi|254780391|r 13 WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE------GDFSSFQPVLLTIS--SLNA 84 (141) Q Consensus 13 ~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~------~~~~~~~PV~i~~~--~~~~ 84 (141) ....+..|+.+- .+.+++|+|.+.+.++.+-+.|=........=|+-..... .-.....+|+++++ .... T Consensus 19 k~~~L~~ll~~~--~~~k~iIF~~t~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~ilv~Td~~~rGi 96 (166) T 2j0s_A 19 KFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGL 96 (166) T ss_dssp HHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSC T ss_pred HHHHHHHHHHHC--CCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCHHCCC T ss_conf 888899998732--687089995371899999986410798269885798546578899998724880999926121477 Q ss_pred CCCCEEEEEECCCCCCCHHH-------------CCCEEEEEECCCCHHHHHHHHHHHHHHH Q ss_conf 99819999816877821131-------------1757999975989899999999999999 Q gi|254780391|r 85 NTSTIRFLVDEASMHIGDVD-------------YYEKVVFIINTDDQGSLEWGRAHWRSLK 132 (141) Q Consensus 85 ~~~~~~~linl~~~~p~~~~-------------~f~rvieiv~~~d~~~~~~aR~rwk~yk 132 (141) +-.++...||.. .|.... +-..++-++. .+|. ..+|.--+.++ T Consensus 97 D~~~v~~Vi~~d--~P~~~~~y~hR~GR~gR~g~~G~~i~~~~-~~e~--~~~~~i~~~~~ 152 (166) T 2j0s_A 97 DVPQVSLIINYD--LPNNRELYIHRIGRSGRYGRKGVAINFVK-NDDI--RILRDIEQYYS 152 (166) T ss_dssp CCTTEEEEEESS--CCSSHHHHHHHHTTSSGGGCCEEEEEEEE-GGGH--HHHHHHHHHTT T ss_pred CCCCCCEEEEEC--CCCCHHHHHHHHHHCCCCCCCEEEEEEEC-HHHH--HHHHHHHHHHC T ss_conf 767898899969--99999999977513447999549999975-7899--99999999972 No 21 >>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A (A:141-294) Probab=61.52 E-value=12 Score=18.11 Aligned_cols=82 Identities=13% Similarity=-0.055 Sum_probs=52.2 Q ss_pred HHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCCEEEEECC--CCCCCCCCEEEEEEC Q ss_conf 99999977984999829989999999985218823331332247776--54442206998328--667899819999816 Q gi|254780391|r 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE--GDFSSFQPVLLTIS--SLNANTSTIRFLVDE 95 (141) Q Consensus 20 L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~--~~~~~~~PV~i~~~--~~~~~~~~~~~linl 95 (141) +.++....+.+++|+|++.+.++.+-+.|+...-....=|+-..... .-......|+++++ +...+-.++.+.+.+ T Consensus 23 ~~~~~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~~~~~~~g~~~ilvaT~~l~~Gidi~~v~~V~~~ 102 (154) T 2v6i_A 23 GYEWITEFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKTFESEYPKCKSEKWDFVITTDISEMGANFKADRVIDPR 102 (154) T ss_dssp CCHHHHSCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTTTHHHHTTHHHHSCCSEEEECGGGGTSCCCCCSEEEECC T ss_pred HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCEEEECHHHHHCCCCCCCEEEECC T ss_conf 99999855898799979899999999999868990999579999999998667995199980578618727961899899 Q ss_pred CCCCCC Q ss_conf 877821 Q gi|254780391|r 96 ASMHIG 101 (141) Q Consensus 96 ~~~~p~ 101 (141) ....+. T Consensus 103 ~~~~~~ 108 (154) T 2v6i_A 103 KTIKPI 108 (154) T ss_dssp EEEEEE T ss_pred CCCCEE T ss_conf 764028 No 22 >>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer, structural genomics; 2.80A {Thermus thermophilus HB8} (A:410-582,A:660-722) Probab=60.45 E-value=13 Score=17.99 Aligned_cols=44 Identities=25% Similarity=0.344 Sum_probs=35.9 Q ss_pred EECCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHC Q ss_conf 63167489999999999997798499982998999999998521 Q gi|254780391|r 7 YRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWT 50 (141) Q Consensus 7 Y~l~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~ 50 (141) |........++..=+......|+.|+|-+.+-+..+.|+++|=. T Consensus 13 Y~T~~eK~~Aiv~ei~e~h~~GqPVLVGT~sve~SE~LS~~L~~ 56 (236) T 2ipc_A 13 YRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKE 56 (236) T ss_dssp ESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH T ss_conf 86399999999999999996499689973626877999999875 No 23 >>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} (A:236-373) Probab=60.30 E-value=13 Score=17.98 Aligned_cols=86 Identities=12% Similarity=0.098 Sum_probs=51.8 Q ss_pred CCHHHHHHHHHHHH--HHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC------CCCCCEEEEECC-- Q ss_conf 74899999999999--97798499982998999999998521882333133224777654------442206998328-- Q gi|254780391|r 11 NDWEYNLLVLLQDE--YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD------FSSFQPVLLTIS-- 80 (141) Q Consensus 11 ~~~~~~~~~L~~K~--~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~------~~~~~PV~i~~~-- 80 (141) .+....+-.|.+-. ...+.+++|+|+..+.++.|.+.|.........=|+-.....-. ......++++++ T Consensus 13 ~~~~~~~~~l~~~i~~~~~~~~~lIf~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~~lv~t~~~ 92 (138) T 2v1x_A 13 SNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAF 92 (138) T ss_dssp SSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTS T ss_pred CHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECHH T ss_conf 00155677888988763357761699754221456778876418603310475229899999999977997689984505 Q ss_pred CCCCCCCCEEEEEECC Q ss_conf 6678998199998168 Q gi|254780391|r 81 SLNANTSTIRFLVDEA 96 (141) Q Consensus 81 ~~~~~~~~~~~linl~ 96 (141) ....+.+++...|+.. T Consensus 93 ~~G~d~~~~~~Vi~~~ 108 (138) T 2v1x_A 93 GMGIDKPDVRFVIHHS 108 (138) T ss_dssp CTTCCCSCEEEEEESS T ss_pred HHCCCCCCCCEEEECC T ss_conf 5406799977472158 No 24 >>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} (A:357-459) Probab=59.70 E-value=7.6 Score=19.32 Aligned_cols=36 Identities=25% Similarity=0.065 Sum_probs=29.6 Q ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCC Q ss_conf 999999999977984999829989999999985218 Q gi|254780391|r 16 NLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTW 51 (141) Q Consensus 16 ~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~ 51 (141) .+..++++..+.|.+|+|.|.+..+++.|-++|=.+ T Consensus 17 ~l~~~~~~~~~~g~~V~i~a~s~~~~~rl~e~L~e~ 52 (103) T 2eyq_A 17 PLDALRKFLETFDGPVVFSVESEGRREALGELLARI 52 (103) T ss_dssp TTHHHHHHHTTCCSCCCEEESSHHHHHHHHHHHGGG T ss_pred HHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHC T ss_conf 899999999963884133048889999999999864 No 25 >>3gfp_A DEAD box protein 5; mRNA export, ATPase, RECA-fold, ATP-binding, cytoplasm, helicase, hydrolase, membrane, mRNA transport; 1.80A {Saccharomyces cerevisiae} (A:) Probab=59.15 E-value=13 Score=17.86 Aligned_cols=83 Identities=16% Similarity=0.018 Sum_probs=55.0 Q ss_pred CHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC------CCCCCCEEEEECC--CCC Q ss_conf 48999999999999779849998299899999999852188233313322477765------4442206998328--667 Q gi|254780391|r 12 DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG------DFSSFQPVLLTIS--SLN 83 (141) Q Consensus 12 ~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~------~~~~~~PV~i~~~--~~~ 83 (141) .....++.|+++. .+.+++|+|.+.+.++.|-+.|....-...+=|+-.....- -......|+++++ .+. T Consensus 23 ~k~~~l~~il~~~--~~~k~lIf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~er~~~~~~F~~~~~~iLv~T~~~~~G 100 (189) T 3gfp_A 23 DKFDVLTELYGLX--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 100 (189) T ss_dssp HHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEETTTTTS T ss_pred HHHHHHHHHHHHC--CCCCEEEEEEEEEHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHCCCCCCCCCEEECCCCHHHE T ss_conf 9999999999847--88857999964303466665543102013333134312677764000137875321103400310 Q ss_pred CCCCCEEEEEECC Q ss_conf 8998199998168 Q gi|254780391|r 84 ANTSTIRFLVDEA 96 (141) Q Consensus 84 ~~~~~~~~linl~ 96 (141) .+-+++..+++.. T Consensus 101 idi~~v~~Vi~~~ 113 (189) T 3gfp_A 101 IDIPTVSXVVNYD 113 (189) T ss_dssp TTCCCCSEEEESS T ss_pred EEEHHHHHCCCCC T ss_conf 1200212100012 No 26 >>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} (A:228-400) Probab=55.04 E-value=16 Score=17.44 Aligned_cols=118 Identities=9% Similarity=-0.018 Sum_probs=70.0 Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC------CCCCCCEEEEECCC-- Q ss_conf 6748999999999999779849998299899999999852188233313322477765------44422069983286-- Q gi|254780391|r 10 KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG------DFSSFQPVLLTISS-- 81 (141) Q Consensus 10 ~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~------~~~~~~PV~i~~~~-- 81 (141) .++....++.|+++. ...+++|+|+....++.|-+.|=...-....=|+-.....- -......++++++. T Consensus 15 ~~~K~~~L~~ll~~~--~~~k~iIF~~t~~~~~~l~~~l~~~~~~~~~~hg~~~~~~R~~~~~~f~~g~~~~lv~td~~~ 92 (173) T 1s2m_A 15 ERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLT 92 (173) T ss_dssp GGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSS T ss_pred CCCCCHHHHHHHHCC--CCCEEEEEEECCCCCCCCCCHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEHHHHH T ss_conf 433202455554304--677289999513433221111332497468873356698887789998669976312001553 Q ss_pred CCCCCCCEEEEEECCCCCCCHHH-------------CCCEEEEEECCCCHHHHHHHHHHHHHHHHC Q ss_conf 67899819999816877821131-------------175799997598989999999999999988 Q gi|254780391|r 82 LNANTSTIRFLVDEASMHIGDVD-------------YYEKVVFIINTDDQGSLEWGRAHWRSLKNS 134 (141) Q Consensus 82 ~~~~~~~~~~linl~~~~p~~~~-------------~f~rvieiv~~~d~~~~~~aR~rwk~yk~~ 134 (141) ...+-.++...||.. .|.... +=..++-++.+. + ....+.--+.++.. T Consensus 93 rG~d~~~v~~VIn~d--~P~~~~~YiHR~GRtgR~g~~G~ai~~~~~~-d--~~~~~~i~~~~~~~ 153 (173) T 1s2m_A 93 RGIDIQAVNVVINFD--FPKTAETYLHRIGRSGRFGHLGLAINLINWN-D--RFNLYKIEQELGTE 153 (173) T ss_dssp SSCCCTTEEEEEESS--CCSSHHHHHHHHCBSSCTTCCEEEEEEECGG-G--HHHHHHHHHHHTCC T ss_pred CCCCCCCCCEEEEEC--CCCCHHHHHHHHCCCCCCCCCEEEEEEECHH-H--HHHHHHHHHHHCCC T ss_conf 466756887899969--9999899997624343599955999997479-9--99999999997765 No 27 >>2wv9_A Flavivirin protease NS2B regulatory subunit, flavivirin protease NS3 catalytic subunit...; NS2B-NS3 protease; 2.75A {Murray valley encephalitis virus} (A:378-536) Probab=52.36 E-value=17 Score=17.18 Aligned_cols=76 Identities=11% Similarity=-0.049 Sum_probs=49.0 Q ss_pred HHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--CCCCCCEEEEECCC--CCCCCCCEEEEEEC Q ss_conf 999999779849998299899999999852188233313322477765--44422069983286--67899819999816 Q gi|254780391|r 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG--DFSSFQPVLLTISS--LNANTSTIRFLVDE 95 (141) Q Consensus 20 L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~--~~~~~~PV~i~~~~--~~~~~~~~~~linl 95 (141) .+++....+.+++|+|++..+++.|-++|=...-....=|+-.....- -.....+|+++++. ...+-.++.+.++. T Consensus 25 ~~~~~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~~~~~~~g~~~ilvaT~~~~~Gidi~~~~~v~~~ 104 (159) T 2wv9_A 25 GFEWITDYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRKSYDTEYPKCKNGDWDFVITTDISEMGANFGASRVIDCR 104 (159) T ss_dssp CCHHHHSCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSSSHHHHGGGGGTCCCSEEEECGGGGTTCCCCCSEEEECC T ss_pred HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCEEEEEECCHHHHCEECCEEEEEECC T ss_conf 99999737999999959999999999999868981999779897776733668973699962347624403616999789 No 28 >>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transferase; HET: DNA; 2.00A {Aquifex aeolicus} (A:225-349) Probab=49.17 E-value=19 Score=16.87 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=31.6 Q ss_pred HHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 131175799997598989999999999999988998603 Q gi|254780391|r 102 DVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDV 140 (141) Q Consensus 102 ~~~~f~rvieiv~~~d~~~~~~aR~rwk~yk~~G~~~~~ 140 (141) ....+.+|+..+| +|..-++.++.-.+.+++.|+...+ T Consensus 59 l~~~~~~vvi~~D-~D~aG~~~a~~~~~~l~~~~~~~~~ 96 (125) T 2au3_A 59 LSKFTKKVYILYD-GDDAGRKAMKSAIPLLLSAGVEVYP 96 (125) T ss_dssp HHTTCSEEEEECC-SSHHHHHHHHHHHHHHHHTTCEEEE T ss_pred HHHCCCCEEEECC-CCHHHHHHHHHHHHHHHCCCCCEEE T ss_conf 7612772367427-8677775578877654023652136 No 29 >>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase, transferase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A (A:157-314) Probab=47.95 E-value=20 Score=16.76 Aligned_cols=60 Identities=8% Similarity=-0.095 Sum_probs=42.2 Q ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCCEEEEECC Q ss_conf 9999977984999829989999999985218823331332247776--54442206998328 Q gi|254780391|r 21 LQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE--GDFSSFQPVLLTIS 80 (141) Q Consensus 21 ~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~--~~~~~~~PV~i~~~ 80 (141) +++....+.+++|+|++...++.+.+.|....-....=|+-..... .-......|+++++ T Consensus 25 l~~l~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~~~~f~~g~~~ilvaT~ 86 (158) T 2jlq_A 25 FDWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD 86 (158) T ss_dssp CHHHHHCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTHHHHGGGGGSSCCSEEEECG T ss_pred HHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCCEEEEECH T ss_conf 99998469999999598899999999997489839993899979998545489942999831 No 30 >>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} (A:146-302) Probab=46.71 E-value=21 Score=16.64 Aligned_cols=85 Identities=14% Similarity=-0.044 Sum_probs=51.4 Q ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--CCCCCCEEEEECCC--CCCCCCCEEEEEECC Q ss_conf 99999779849998299899999999852188233313322477765--44422069983286--678998199998168 Q gi|254780391|r 21 LQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG--DFSSFQPVLLTISS--LNANTSTIRFLVDEA 96 (141) Q Consensus 21 ~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~--~~~~~~PV~i~~~~--~~~~~~~~~~linl~ 96 (141) ..+....+.+++|+|++.+.++.|.++|.......-.-|+-.....- -......|+++++. ...+-+.+.+.++.. T Consensus 25 ~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~g~~~~~l~~~~~~~~~~~~~~g~~~vlvaT~~~~~Gid~~~~~~V~~~~ 104 (157) T 1yks_A 25 HDWILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILATDIAEMGANLCVERVLDCRT 104 (157) T ss_dssp CHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC--------CCCSEEEESSSTTCCTTCCCSEEEECCE T ss_pred HHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCEEEEEECCHHHHCCCCCCEEEEECCC T ss_conf 99987347986998466999999999998489849998899739888775569835999712576340347239997886 Q ss_pred CCCCCHHHC Q ss_conf 778211311 Q gi|254780391|r 97 SMHIGDVDY 105 (141) Q Consensus 97 ~~~p~~~~~ 105 (141) ...+..+.. T Consensus 105 ~~~~~~~~~ 113 (157) T 1yks_A 105 AFKPVLVDE 113 (157) T ss_dssp EEEEEEETT T ss_pred CCCEEEECC T ss_conf 321046558 No 31 >>2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A* (A:284-381,A:547-680) Probab=46.57 E-value=21 Score=16.63 Aligned_cols=88 Identities=17% Similarity=0.141 Sum_probs=55.4 Q ss_pred EEEEEECCCCH--HHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEE Q ss_conf 27996316748--999999999999779---8499982998999999998521882333133224777654442206998 Q gi|254780391|r 3 TLLFYRFKNDW--EYNLLVLLQDEYEKG---KRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLL 77 (141) Q Consensus 3 ~v~FY~l~~~~--~~~~~~L~~K~~~~~---~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~~~~~~PV~i 77 (141) .+.++...+.. ...++..+.+....| ..|-|+|++..++..|-+.|=. .=||+.+.++....... ..|.| T Consensus 34 ~~~~~~~~~~~~E~~~i~~~I~~~~~~g~~~~dIAIL~r~~~~~~~l~~~L~~----~gIP~~~~~~~~~~~~~-~~V~i 108 (232) T 2is6_A 34 PISLYCAFNELDEARFVVNRIKTWQDNGGALAECAILYRSNAQSRVLEEALLQ----ASMPYRIYGGMRADTWQ-DAVQL 108 (232) T ss_dssp CEEEEEEEEHHHHHHHHHHHHHHHHHTTCCGGGEEEEESSGGGHHHHHHHHHH----TTCCEEECSSSCCCCSS-CCEEE T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHH----CCCCEEEECCCCCCCCC-CEEEE T ss_conf 61799547678889999999987875198732124664152418999999997----79988985897646778-96999 Q ss_pred EC-CCCCCCCCCEEEEEEC Q ss_conf 32-8667899819999816 Q gi|254780391|r 78 TI-SSLNANTSTIRFLVDE 95 (141) Q Consensus 78 ~~-~~~~~~~~~~~~linl 95 (141) ++ +.-.-...++.++..+ T Consensus 109 ~Tih~~KGlE~~vV~i~~~ 127 (232) T 2is6_A 109 MTLHSAKGLEFPQVFIVGM 127 (232) T ss_dssp EEHHHHTTCCEEEEEECCC T ss_pred EEHHCCCCCCCCEEEEECC T ss_conf 6645024257888999678 No 32 >>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* (A:416-602) Probab=46.52 E-value=21 Score=16.62 Aligned_cols=110 Identities=14% Similarity=0.088 Sum_probs=70.6 Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC------CCCCCCCEEEEECC--C Q ss_conf 674899999999999977984999829989999999985218823331332247776------54442206998328--6 Q gi|254780391|r 10 KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE------GDFSSFQPVLLTIS--S 81 (141) Q Consensus 10 ~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~------~~~~~~~PV~i~~~--~ 81 (141) .......+...+.+..+.+.+++|+|...+.++.+..+|=...-....=|+-..... +-......|+|+++ . T Consensus 12 ~~~k~~~ll~~i~~~~~~~~k~iIF~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~R~~~~~~F~~g~~~ili~T~~~~ 91 (187) T 2d7d_A 12 IEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLR 91 (187) T ss_dssp STTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCS T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCH T ss_conf 33425778999999996387379963452146887777774598400024433453223567764148740799872230 Q ss_pred CCCCCCCEEEEEECCCCC---CCH----HHCC--------CEEEEEECCCCHH Q ss_conf 678998199998168778---211----3117--------5799997598989 Q gi|254780391|r 82 LNANTSTIRFLVDEASMH---IGD----VDYY--------EKVVFIINTDDQG 119 (141) Q Consensus 82 ~~~~~~~~~~linl~~~~---p~~----~~~f--------~rvieiv~~~d~~ 119 (141) ...+-.++..+||.++.+ |.+ .++- .+++-++...+.. T Consensus 92 ~Gidi~~v~~VI~~d~~~~~~~~~~~~~iqr~GR~gR~g~~~~i~~~~~~~~~ 144 (187) T 2d7d_A 92 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKITKS 144 (187) T ss_dssp TTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTSTTCEEEEECSSCCHH T ss_pred HCCCCCCCCEEEECCHHHHHHHHCCCCHHHHCCHHHHCCCCCEEECCCCCCCC T ss_conf 10156442256521003344311121123210234434677366401026676 No 33 >>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A (A:1-184) Probab=46.48 E-value=21 Score=16.62 Aligned_cols=84 Identities=14% Similarity=0.005 Sum_probs=50.3 Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC------CCCCCCEEEEECCC-- Q ss_conf 6748999999999999779849998299899999999852188233313322477765------44422069983286-- Q gi|254780391|r 10 KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG------DFSSFQPVLLTISS-- 81 (141) Q Consensus 10 ~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~------~~~~~~PV~i~~~~-- 81 (141) .+.....+..++.+. .+.+++|+|.+.+.++.|-++|=...-....=|+-.....- -......|+++++. T Consensus 15 ~~~K~~~l~~~l~~~--~~~k~lIf~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~F~~~~~~vli~t~~~~ 92 (184) T 3eaq_A 15 VRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAA 92 (184) T ss_dssp TTSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTT T ss_pred HHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECHHHH T ss_conf 876999999999858--989799997958999999999986899789997999999999999988528734897211443 Q ss_pred CCCCCCCEEEEEEC Q ss_conf 67899819999816 Q gi|254780391|r 82 LNANTSTIRFLVDE 95 (141) Q Consensus 82 ~~~~~~~~~~linl 95 (141) ...+-..+.++|+. T Consensus 93 ~Gldl~~~~~vI~~ 106 (184) T 3eaq_A 93 RGLDIPQVDLVVHY 106 (184) T ss_dssp CSSSCCCBSEEEES T ss_pred CCCEECCCHHHHHC T ss_conf 14311263054426 No 34 >>2jmk_A Hypothetical protein TA0956; protein binding; NMR {Thermoplasma acidophilum} PDB: 2k24_A (A:) Probab=45.58 E-value=9.6 Score=18.71 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=23.8 Q ss_pred ECCCCHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 7598989999999999999988998603 Q gi|254780391|r 113 INTDDQGSLEWGRAHWRSLKNSGYAPDV 140 (141) Q Consensus 113 v~~~d~~~~~~aR~rwk~yk~~G~~~~~ 140 (141) |...++..|+.-|+--+.||+.||..++ T Consensus 82 Fs~~~~~~K~~i~ei~~kyk~~Gyk~E~ 109 (111) T 2jmk_A 82 FSDIDENMKKVIKATAEKFKNKGFKVET 109 (111) T ss_dssp ECSCCTTHHHHHHHHHHHGGGGCCEEEE T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEC T ss_conf 3254446899999999987537851540 No 35 >>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} (B:252-500) Probab=44.19 E-value=19 Score=16.97 Aligned_cols=69 Identities=10% Similarity=-0.048 Sum_probs=41.9 Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-----C-CCCCCEEE Q ss_conf 27996316748999999999999779849998299899999999852188233313322477765-----4-44220699 Q gi|254780391|r 3 TLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG-----D-FSSFQPVL 76 (141) Q Consensus 3 ~v~FY~l~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~-----~-~~~~~PV~ 76 (141) ++..|.-..+....+..++.+ .+.+++|+|.....++.|-+.|=. .-|+-.....- . ......|+ T Consensus 2 q~~~~~~~~~K~~~L~~lL~~---~~~k~IIF~~t~~~~~~l~~~L~~------~~hg~l~~~~R~~~~~~F~~~~~~il 72 (249) T 1gku_B 2 NVEDVAVNDESISTLSSILEK---LGTGGIIYARTGEEAEEIYESLKN------KFRIGIVTATKKGDYEKFVEGEIDHL 72 (249) T ss_dssp CEEEEEESCCCTTTTHHHHTT---SCSCEEEEESSHHHHHHHHHTTTT------SSCEEECTTSSSHHHHHHHHTSCSEE T ss_pred CHHHHCCCCHHHHHHHHHHHH---HCCCCEEEECCCCHHHHHHHHHHH------CEEEEEEEECCCCCHHHHHCCCHHHH T ss_conf 113410263327789999997---078856996065038999999753------53788997225676787725413654 Q ss_pred EECC Q ss_conf 8328 Q gi|254780391|r 77 LTIS 80 (141) Q Consensus 77 i~~~ 80 (141) +++. T Consensus 73 vat~ 76 (249) T 1gku_B 73 IGTA 76 (249) T ss_dssp EEEC T ss_pred HCHH T ss_conf 0124 No 36 >>1xkn_A Putative peptidyl-arginine deiminase; alpha-beta protein, NESG, structural genomics, protein structure initiative, PSI; 1.60A {Chlorobium tepidum tls} (A:13-94,A:334-355) Probab=42.86 E-value=24 Score=16.28 Aligned_cols=33 Identities=12% Similarity=0.151 Sum_probs=19.9 Q ss_pred HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH Q ss_conf 9999999999977984999829989999999985 Q gi|254780391|r 15 YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYL 48 (141) Q Consensus 15 ~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~L 48 (141) ...+.+ .|++..+.+|.|+|.+++..+..-++| T Consensus 26 ~~~a~i-a~aIa~~E~V~Iiv~d~~~~~~a~~~L 58 (104) T 1xkn_A 26 AVFAEL-AYQLSRSETVNINVLDDAXEAQARELL 58 (104) T ss_dssp HHHHHH-HHHHHHHSEEEEEESSHHHHHHHHHHH T ss_pred HHHHHH-HHHHHCCCEEEEEECCHHHHHHHHHHH T ss_conf 999999-999857985999989889999999998 No 37 >>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} (A:210-342) Probab=42.30 E-value=25 Score=16.23 Aligned_cols=85 Identities=15% Similarity=0.102 Sum_probs=55.1 Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC------CCCCCEEEEECC--C Q ss_conf 67489999999999997798499982998999999998521882333133224777654------442206998328--6 Q gi|254780391|r 10 KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD------FSSFQPVLLTIS--S 81 (141) Q Consensus 10 ~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~------~~~~~PV~i~~~--~ 81 (141) .++....+..+++. ..+.+++|+|...+.++.+-+.|=........=|+-.....-. .....++++++. . T Consensus 11 ~~~K~~~l~~~l~~--~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~R~~~~~~F~~~~~~~lv~t~~~~ 88 (133) T 1oyw_A 11 KFKPLDQLXRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFG 88 (133) T ss_dssp CSSHHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSC T ss_pred HHHHHHHHHHHHHH--HCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECHHH T ss_conf 67899999998886--1688479998434038999999986699841224788999999999999769987899720643 Q ss_pred CCCCCCCEEEEEECC Q ss_conf 678998199998168 Q gi|254780391|r 82 LNANTSTIRFLVDEA 96 (141) Q Consensus 82 ~~~~~~~~~~linl~ 96 (141) ...+..++...|+.. T Consensus 89 ~g~d~~~v~~Vi~~d 103 (133) T 1oyw_A 89 XGINKPNVRFVVHFD 103 (133) T ss_dssp TTTCCTTCCEEEESS T ss_pred CCCCCCCCCEEEEEC T ss_conf 677613577799948 No 38 >>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} (A:193-337) Probab=38.37 E-value=26 Score=16.08 Aligned_cols=110 Identities=11% Similarity=-0.028 Sum_probs=58.0 Q ss_pred EEECCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC------CCCCCCCEEEEEC Q ss_conf 9631674899999999999977984999829989999999985218823331332247776------5444220699832 Q gi|254780391|r 6 FYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE------GDFSSFQPVLLTI 79 (141) Q Consensus 6 FY~l~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~------~~~~~~~PV~i~~ 79 (141) +|...++....+..++.+. .+.+++|+|+....++.|-+.|=.. ..=|+-..... .-......|++++ T Consensus 8 ~~~~~~~k~~~l~~~l~~~--~~~k~iIF~~~~~~~~~l~~~l~~~----~~~~~~~~~~~r~~~~~~F~~g~~~vlv~t 81 (145) T 2z0m_A 8 KFVHVKDDWRSKVQALREN--KDKGVIVFVRTRNRVAKLVRLFDNA----IELRGDLPQSVRNRNIDAFREGEYDMLITT 81 (145) T ss_dssp EEEECSSSSHHHHHHHHTC--CCSSEEEECSCHHHHHHHHTTCTTE----EEECTTSCHHHHHHHHHHHHTTSCSEEEEC T ss_pred CCCCCCCCCHHHHHHHHHC--CCCCEEEEEEEEECCCCCCCCCCCC----EEECCCCCHHHHHHHHHHHHCCCCCEEEEE T ss_conf 2222222212467776514--6884799996540122333232322----003379999999999999867986589973 Q ss_pred C--CCCCCCCCEEEEEECCCCC-CC-HH---------HCCCEEEEEECCCCHHHHH Q ss_conf 8--6678998199998168778-21-13---------1175799997598989999 Q gi|254780391|r 80 S--SLNANTSTIRFLVDEASMH-IG-DV---------DYYEKVVFIINTDDQGSLE 122 (141) Q Consensus 80 ~--~~~~~~~~~~~linl~~~~-p~-~~---------~~f~rvieiv~~~d~~~~~ 122 (141) + ....+-+++..+|+.++.. +. +. .+=..++-++. .++.... T Consensus 82 ~~~~~Gidi~~~~~vi~~~~~~~~~~~~Qr~GR~gR~g~~g~~~~~~~-~~~~~~~ 136 (145) T 2z0m_A 82 DVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEK 136 (145) T ss_dssp HHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHH T ss_pred CHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEEEC-CCHHHHH T ss_conf 155447886688789994899999999836402557999438999988-8588999 No 39 >>2vbc_A Dengue 4 NS3 FULL-length protein; transmembrane, RNA replication, NS2B-NS3 protease; 3.15A {Dengue virus type 4} (A:324-425,A:465-481) Probab=38.32 E-value=29 Score=15.85 Aligned_cols=75 Identities=11% Similarity=-0.058 Sum_probs=45.1 Q ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCCEEEEECCCC--CCCCCCEEEEEECC Q ss_conf 9999977984999829989999999985218823331332247776--5444220699832866--78998199998168 Q gi|254780391|r 21 LQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE--GDFSSFQPVLLTISSL--NANTSTIRFLVDEA 96 (141) Q Consensus 21 ~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~--~~~~~~~PV~i~~~~~--~~~~~~~~~linl~ 96 (141) +......+.+++|+|++.+.++.|.+.|=...-....=|+-.-... .-......|+++++-- ..+ .++...||.- T Consensus 25 ~~~~~~~~~~~lIF~~s~~~ae~l~~~L~~~g~~~~~lhg~~R~~~~~~f~~g~~~vLVaTdil~rGiD-i~v~~VI~~~ 103 (119) T 2vbc_A 25 FDWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTDISEMGAN-FRAGRVIDPP 103 (119) T ss_dssp CHHHHHCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTHHHHTHHHHHSCCSEEEECGGGGTTCC-CCCSEEEECC T ss_pred HHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCCEEEEECHHHHHCCC-CCCEEEEECC T ss_conf 999985689999995988999999999973898299927999877782467999539998658761853-5917999798 No 40 >>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} (A:272-434) Probab=32.49 E-value=36 Score=15.28 Aligned_cols=122 Identities=15% Similarity=0.090 Sum_probs=66.9 Q ss_pred CHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCC------CCCCCCCCEEEEECCC--CC Q ss_conf 489999999999997798499982998999999998521882333133224777------6544422069983286--67 Q gi|254780391|r 12 DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGD------EGDFSSFQPVLLTISS--LN 83 (141) Q Consensus 12 ~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~------~~~~~~~~PV~i~~~~--~~ 83 (141) +....+.+|+ -..+.+++|+|...+.++.|-..|=......-.=|+-.... ..-......|+++++. .. T Consensus 16 ~k~~~l~~ll---~~~~~k~iVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~G 92 (163) T 2db3_A 16 AKRSKLIEIL---SEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRG 92 (163) T ss_dssp GHHHHHHHHH---HHCCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSS T ss_pred CCCCCCCCCC---CCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHC T ss_conf 2222222222---4567439999704411255788776412454322334303589999999986999799983612305 Q ss_pred CCCCCEEEEEECCCCC--CCHHH---------CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCC Q ss_conf 8998199998168778--21131---------1757999975989899999999999999889986 Q gi|254780391|r 84 ANTSTIRFLVDEASMH--IGDVD---------YYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138 (141) Q Consensus 84 ~~~~~~~~linl~~~~--p~~~~---------~f~rvieiv~~~d~~~~~~aR~rwk~yk~~G~~~ 138 (141) .+-.++..+|+..... -.+.+ +-..++-++...+ .....+...+.++..+-+. T Consensus 93 id~~~v~~vI~~d~p~~~~~~~qr~GR~~R~g~~~~~i~~~~~~~--~~~~~~~i~~~~~~~~~~v 156 (163) T 2db3_A 93 LDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEK--DRAIAADLVKILEGSGQTV 156 (163) T ss_dssp CCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTT--CGGGHHHHHHHHHHTTCCC T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEEECCHH--HHHHHHHHHHHHHHCCCCC T ss_conf 870469899997999899999957535325999449999986145--3999999999999869979 No 41 >>1t6t_1 Putative protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.80A {Aquifex aeolicus VF5} (1:) Probab=32.44 E-value=36 Score=15.27 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=32.8 Q ss_pred CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 2113117579999759898999999999999998899860 Q gi|254780391|r 100 IGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPD 139 (141) Q Consensus 100 p~~~~~f~rvieiv~~~d~~~~~~aR~rwk~yk~~G~~~~ 139 (141) ...+.++.+|+..+| +|+.-.+.+++-.+.....|..|+ T Consensus 56 ~~~l~~~~~vii~~D-~D~~G~~~~~~~~~~l~~~g~D~~ 94 (118) T 1t6t_1 56 DXLEGKWEKVILLFD-LDTHGERINQKXKELLSSQGFLVD 94 (118) T ss_dssp HHHTTTCSEEEECCC-SSHHHHHHHHHHHHHHHHTTCEEE T ss_pred HHHHHCCCCEEEEEC-CCHHHHHHHHHHHHHHHHCCCEEE T ss_conf 999834892699848-988899999999999998699442 No 42 >>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} (A:371-590) Probab=30.84 E-value=38 Score=15.11 Aligned_cols=74 Identities=15% Similarity=0.016 Sum_probs=44.3 Q ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCC-------C-CC--------CCCCCCCCEEEEECC--CCCCC Q ss_conf 997798499982998999999998521882333133224-------7-77--------654442206998328--66789 Q gi|254780391|r 24 EYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD-------V-GD--------EGDFSSFQPVLLTIS--SLNAN 85 (141) Q Consensus 24 ~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~-------~-~~--------~~~~~~~~PV~i~~~--~~~~~ 85 (141) ....+.+++|+|++.+.++.+.+.|...-..+---|+.. + .. ........-|+++++ .+..+ T Consensus 65 ~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~l~~GiD 144 (220) T 3h1t_A 65 RTDRFAKTIVFCVDQEHADEXRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQLLTTGVD 144 (220) T ss_dssp HHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESSTTTTTCC T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCC T ss_conf 04555533212586899999999999743244431576068982687540899999987310599659999484753168 Q ss_pred CCCEEEEEECCC Q ss_conf 981999981687 Q gi|254780391|r 86 TSTIRFLVDEAS 97 (141) Q Consensus 86 ~~~~~~linl~~ 97 (141) -.++..+|+... T Consensus 145 ip~v~~Vi~~~~ 156 (220) T 3h1t_A 145 APTCKNVVLARV 156 (220) T ss_dssp CTTEEEEEEESC T ss_pred HHHCCEEEEECC T ss_conf 634098999127 No 43 >>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic transport, mRNA export, protein interaction; HET: ADP; 3.19A {Homo sapiens} (B:) Probab=25.62 E-value=17 Score=17.23 Aligned_cols=78 Identities=10% Similarity=-0.002 Sum_probs=51.1 Q ss_pred HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC------CCCCCCCEEEEECCC--CCCCCCCEE Q ss_conf 999999977984999829989999999985218823331332247776------544422069983286--678998199 Q gi|254780391|r 19 VLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE------GDFSSFQPVLLTISS--LNANTSTIR 90 (141) Q Consensus 19 ~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~------~~~~~~~PV~i~~~~--~~~~~~~~~ 90 (141) .+.........+++|+|...+.++.+-..|+.....+..=|+-..... .-......|+++++. ...+-.++. T Consensus 324 ~~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~iLv~Td~~~rGiDi~~V~ 403 (479) T 3fmp_B 324 LCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVS 403 (479) T ss_dssp -------------------------------------------------------------------------------- T ss_pred HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCC T ss_conf 99999845777279998413204566655553166400014554220047787787659961999781575768725798 Q ss_pred EEEECC Q ss_conf 998168 Q gi|254780391|r 91 FLVDEA 96 (141) Q Consensus 91 ~linl~ 96 (141) .+||.+ T Consensus 404 ~VI~yd 409 (479) T 3fmp_B 404 VVINFD 409 (479) T ss_dssp ------ T ss_pred EEEEEC T ss_conf 999979 No 44 >>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} (A:219-662) Probab=24.55 E-value=49 Score=14.43 Aligned_cols=40 Identities=8% Similarity=-0.101 Sum_probs=33.9 Q ss_pred CHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCC Q ss_conf 4899999999999977984999829989999999985218 Q gi|254780391|r 12 DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTW 51 (141) Q Consensus 12 ~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~ 51 (141) ..+..++..+.++++.|.+++|=|.....++.|=.+|+.+ T Consensus 7 ~r~~~l~~~i~~tl~~gG~vLIPv~a~GR~qEll~~L~~~ 46 (444) T 2i7x_A 7 KRSKIFKDTLKKGLSSDGSVIIPVDMSGKFLDLFTQVHEL 46 (444) T ss_dssp HHHHHHHHHHHHHTSTTCEEEEEECTTTHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHH T ss_conf 8999999999999967998999607853899999999999 No 45 >>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} (A:1-44,A:95-171) Probab=24.40 E-value=50 Score=14.41 Aligned_cols=59 Identities=12% Similarity=-0.088 Sum_probs=42.1 Q ss_pred CCEEEEEECCC-CHHH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 98279963167-4899-99999999997798499982998999999998521882333133 Q gi|254780391|r 1 MRTLLFYRFKN-DWEY-NLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 (141) Q Consensus 1 Mt~v~FY~l~~-~~~~-~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH 59 (141) |+.|.-..... .-.. .+.+|+...-+.|.++.|++.|.-.....|=.|=..=+.+-+|- T Consensus 1 mp~vi~~~G~~G~GKTT~~~~l~~~l~~~g~~v~vi~~D~~~~~d~DlILvEG~K~~~~PK 61 (121) T 2f1r_A 1 MSLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFDYDLVITEGFSKAGKDR 61 (121) T ss_dssp --CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------TCSEEEEESCGGGCCCE T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECEECCCCCHCCCCEEEEECCCCCCC T ss_conf 9979999888995399999999834187886899906642555432200023301112564 No 46 >>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens} (A:) Probab=22.97 E-value=53 Score=14.24 Aligned_cols=25 Identities=8% Similarity=-0.084 Sum_probs=20.9 Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECC Q ss_conf 8999999999999779849998299 Q gi|254780391|r 13 WEYNLLVLLQDEYEKGKRVSVQCGS 37 (141) Q Consensus 13 ~~~~~~~L~~K~~~~~~ri~I~~~d 37 (141) ....++++++++...|.+|+|+|.. T Consensus 69 ~~~~~~~~i~~~~~~~~~VlVHC~~ 93 (160) T 1yz4_A 69 HFKECINFIHCCRLNGGNCLVHSFA 93 (160) T ss_dssp GHHHHHHHHHHHHHTTCCEEEEETT T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHH T ss_conf 9999999888753010478762331 No 47 >>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens} (A:) Probab=22.85 E-value=53 Score=14.23 Aligned_cols=26 Identities=12% Similarity=0.187 Sum_probs=21.6 Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCH Q ss_conf 89999999999997798499982998 Q gi|254780391|r 13 WEYNLLVLLQDEYEKGKRVSVQCGSE 38 (141) Q Consensus 13 ~~~~~~~L~~K~~~~~~ri~I~~~d~ 38 (141) ....+++++.++.+.|.+|+|+|..- T Consensus 68 ~~~~~~~~i~~~~~~~~~VlVHC~~G 93 (165) T 1wrm_A 68 HFKESIKFIHECRLRGESCLVHCLAG 93 (165) T ss_dssp GHHHHHHHHHHHHHTTCEEEEECSSS T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCC T ss_conf 99999998864320343057883344 No 48 >>2wv9_A Flavivirin protease NS2B regulatory subunit, flavivirin protease NS3 catalytic subunit...; NS2B-NS3 protease; 2.75A {Murray valley encephalitis virus} (A:232-377,A:537-633) Probab=22.45 E-value=54 Score=14.18 Aligned_cols=48 Identities=19% Similarity=0.118 Sum_probs=39.0 Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 899999999999977984999829989999999985218823331332 Q gi|254780391|r 13 WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 (141) Q Consensus 13 ~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~ 60 (141) ...++..+++.+...+.|++|+++....+.++-+.|..+.....+.=. T Consensus 24 T~~~l~~il~~~~~~~~rvLiLaPtr~Lv~Q~~e~l~~~~~~~~~~~~ 71 (243) T 2wv9_A 24 TRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLPVRYLTPAV 71 (243) T ss_dssp TTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCCEECCC-- T ss_pred HHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHCCCCEEEEEEEE T ss_conf 999999999856146999999969999999999986648638997558 No 49 >>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} (A:) Probab=22.42 E-value=21 Score=16.63 Aligned_cols=82 Identities=10% Similarity=0.062 Sum_probs=45.6 Q ss_pred CCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-----CC-CCCCCEEEEECC--CCCCCCCCEEEEEECC-- Q ss_conf 7984999829989999999985218823331332247776-----54-442206998328--6678998199998168-- Q gi|254780391|r 27 KGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE-----GD-FSSFQPVLLTIS--SLNANTSTIRFLVDEA-- 96 (141) Q Consensus 27 ~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~-----~~-~~~~~PV~i~~~--~~~~~~~~~~~linl~-- 96 (141) .+.+++|+|.+.+.++.+.+.|=...-....=|+-..... .. .....+|+++++ ....+-.++..+|+.+ T Consensus 258 ~~~~~lIf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~VI~~~~p 337 (394) T 1fuu_A 258 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIXKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLP 337 (394) T ss_dssp -------------------------------------------------------------------------------- T ss_pred CCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEEEEECCC T ss_conf 55314777410355555777764302444343321357788999988732786403541133245676688889996999 Q ss_pred CCCCCHHHCCCE Q ss_conf 778211311757 Q gi|254780391|r 97 SMHIGDVDYYEK 108 (141) Q Consensus 97 ~~~p~~~~~f~r 108 (141) ...-.+.++..| T Consensus 338 ~~~~~~~qr~GR 349 (394) T 1fuu_A 338 ANKENYIHRIGR 349 (394) T ss_dssp ------------ T ss_pred CCHHHHHHHHHH T ss_conf 899999988505 No 50 >>2q05_A Late protein H1, dual specificity protein phosphatase; structural genomics, APC7320, PSI-2, protein structure initiative; HET: MSE; 2.57A {Vaccinia virus WR} (A:) Probab=21.75 E-value=56 Score=14.09 Aligned_cols=28 Identities=4% Similarity=0.038 Sum_probs=16.2 Q ss_pred CCEEEEEECCCCCCCHHHCCCEEEEEEC Q ss_conf 8199998168778211311757999975 Q gi|254780391|r 87 STIRFLVDEASMHIGDVDYYEKVVFIIN 114 (141) Q Consensus 87 ~~~~~linl~~~~p~~~~~f~rvieiv~ 114 (141) .++..++|++...+..+...-+.+.+-. T Consensus 72 ~gI~~Vlnl~~e~~~~~~~~~~~~~~~~ 99 (195) T 2q05_A 72 VKFKYVLNLTXDKYTLPNSNINIIHIPL 99 (195) T ss_dssp SCCSEEEECSSSCCCCTTCCCEEEECCC T ss_pred CCCEEEEEEECCCCCCCCCCCEEEEEEE T ss_conf 9980999975899888888807999998 No 51 >>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure, hydrolase; HET: EPE; 2.00A {Homo sapiens} (A:) Probab=21.64 E-value=56 Score=14.08 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=19.8 Q ss_pred HHHHHHHHHHHHHCCCEEEEEECC Q ss_conf 999999999999779849998299 Q gi|254780391|r 14 EYNLLVLLQDEYEKGKRVSVQCGS 37 (141) Q Consensus 14 ~~~~~~L~~K~~~~~~ri~I~~~d 37 (141) ...++.+++++.+.|++|+|+|.. T Consensus 83 ~~~~~~~i~~~~~~~~~VlVHC~~ 106 (188) T 2esb_A 83 FDPIADHIHSVEMKQGRTLLHCAA 106 (188) T ss_dssp HHHHHHHHHHHHHTTCCEEEECSS T ss_pred HHHHHHHHHHHHHCCCEEEEECCC T ss_conf 999999888766157517998135 No 52 >>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} (A:1-93,A:213-254) Probab=21.49 E-value=57 Score=14.06 Aligned_cols=39 Identities=13% Similarity=-0.116 Sum_probs=31.7 Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCC Q ss_conf 899999999999977984999829989999999985218 Q gi|254780391|r 13 WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTW 51 (141) Q Consensus 13 ~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~ 51 (141) +.+.+.++++...+++-+++|.+.|..-+..++.+==.| T Consensus 47 I~~~~~~i~~~L~~~~vk~IVIACNTASa~AL~~LR~~~ 85 (135) T 1b73_A 47 IIRYSLECAGFLKDKGVDIIVVACNTASAYALERLKKEI 85 (135) T ss_dssp HHHHHHHHHHHHHTTTCSEEEECCHHHHTTSHHHHHHHS T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH T ss_conf 999999999999865998999947745889999999871 Done!