HHsearch results for GI: 254780391 and protein with PDBid: 1em8_A

>1em8_A DNA polymerase III CHI subunit; DNA POL III, heterodimer, clamp-loader, alpha-beta fold, gene regulation; HET: DNA; 2.10A {Escherichia coli} SCOP: c.128.1.1
Probab=100.00  E-value=8.7e-41  Score=264.98  Aligned_cols=135  Identities=19%  Similarity=0.368  Sum_probs=120.0

Q ss_pred             CCEEEEEECCCC--------HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             982799631674--------899999999999977984999829989999999985218823331332247776544422
Q gi|254780391|r    1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSF   72 (141)
Q Consensus         1 Mt~v~FY~l~~~--------~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~~~~~   72 (141)
                      ||+|+||++.++        .+.++|||++|+|++|+|++|+|+|+++++.||++||+|+++|||||++.+++.   ...
T Consensus         1 M~~~~FY~l~~~~~~~~l~~~~~~~crL~~K~~~~g~ri~I~~~d~~~a~~LD~~LWt~~~~sFlPH~i~~~~~---~~~   77 (147)
T 1em8_A            1 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGP---RGG   77 (147)
T ss_dssp             CEEEEEEECSCCCCBTTBCHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHCSTTCCCCEEETTCSS---TTC
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCCCC---CCC
T ss_conf             98269998579855667768999999999999977997999949999999999998679988585244378886---467


Q ss_pred             CEEEEECCCCCCCCCCEEEEEECCCCCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             06998328667899819999816877821131175799997598989999999999999988998603
Q gi|254780391|r   73 QPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDV  140 (141)
Q Consensus        73 ~PV~i~~~~~~~~~~~~~~linl~~~~p~~~~~f~rvieiv~~~d~~~~~~aR~rwk~yk~~G~~~~~  140 (141)
                      +||+|+++...++. ..++|||+++..|+++++|+||+|||+ +|++.|+.||+|||+||++||+++.
T Consensus        78 ~pI~l~~~~~~~~~-~~~vliNl~~~~p~~~~~f~Rvieiv~-~de~~~~~aR~r~k~yk~~G~~i~~  143 (147)
T 1em8_A           78 APVEIAWPQKRSSS-RRDILISLRTSFADFATAFTEVVDFVP-YEDSLKQLARERYKAYRVAGFNLNT  143 (147)
T ss_dssp             CSEEEECTTSCCCS-CCSEEEECCSSCCGGGGGCSEEEEEEC-SSHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred             CCEEEECCCCCCCC-CCEEEEECCCCCCCCCCCCCEEEEEEC-CCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             99674068767876-674999899878312146788999969-8999999999999999987998605