HHsearch results for GI: 254780391 and protein with PDBid: 1em8_A
>1em8_A DNA polymerase III CHI subunit; DNA POL III, heterodimer, clamp-loader, alpha-beta fold, gene regulation; HET: DNA; 2.10A {Escherichia coli} SCOP: c.128.1.1
Probab=100.00 E-value=8.7e-41 Score=264.98 Aligned_cols=135 Identities=19% Similarity=0.368 Sum_probs=120.0
Q ss_pred CCEEEEEECCCC--------HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 982799631674--------899999999999977984999829989999999985218823331332247776544422
Q gi|254780391|r 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSF 72 (141)
Q Consensus 1 Mt~v~FY~l~~~--------~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~~~~~ 72 (141)
||+|+||++.++ .+.++|||++|+|++|+|++|+|+|+++++.||++||+|+++|||||++.+++. ...
T Consensus 1 M~~~~FY~l~~~~~~~~l~~~~~~~crL~~K~~~~g~ri~I~~~d~~~a~~LD~~LWt~~~~sFlPH~i~~~~~---~~~ 77 (147)
T 1em8_A 1 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGP---RGG 77 (147)
T ss_dssp CEEEEEEECSCCCCBTTBCHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHCSTTCCCCEEETTCSS---TTC
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCCCC---CCC
T ss_conf 98269998579855667768999999999999977997999949999999999998679988585244378886---467
Q ss_pred CEEEEECCCCCCCCCCEEEEEECCCCCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 06998328667899819999816877821131175799997598989999999999999988998603
Q gi|254780391|r 73 QPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDV 140 (141)
Q Consensus 73 ~PV~i~~~~~~~~~~~~~~linl~~~~p~~~~~f~rvieiv~~~d~~~~~~aR~rwk~yk~~G~~~~~ 140 (141)
+||+|+++...++. ..++|||+++..|+++++|+||+|||+ +|++.|+.||+|||+||++||+++.
T Consensus 78 ~pI~l~~~~~~~~~-~~~vliNl~~~~p~~~~~f~Rvieiv~-~de~~~~~aR~r~k~yk~~G~~i~~ 143 (147)
T 1em8_A 78 APVEIAWPQKRSSS-RRDILISLRTSFADFATAFTEVVDFVP-YEDSLKQLARERYKAYRVAGFNLNT 143 (147)
T ss_dssp CSEEEECTTSCCCS-CCSEEEECCSSCCGGGGGCSEEEEEEC-SSHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred CCEEEECCCCCCCC-CCEEEEECCCCCCCCCCCCCEEEEEEC-CCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99674068767876-674999899878312146788999969-8999999999999999987998605