HHSEARCH alignment of GI: 254780391 and SCOP domain: d1s2ma2

Alignment
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=93.89  E-value=0.13  Score=27.52  Aligned_cols=109  Identities=11%  Similarity=0.072  Sum_probs=67.0

Q ss_pred             EEECC--CCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC------CCCCCCCEEEE
Q ss_conf             96316--74899999999999977984999829989999999985218823331332247776------54442206998
Q gi|254780391|r    6 FYRFK--NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE------GDFSSFQPVLL   77 (141)
Q Consensus         6 FY~l~--~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~------~~~~~~~PV~i   77 (141)
                      ||...  ++...++..|+++.  .+.+++|+|.+..+++.|-..|+...-....=|+-.....      .-......|++
T Consensus        10 ~yi~v~~~~K~~~L~~ll~~~--~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~~~~ilv   87 (171)
T d1s2ma2          10 YYAFVEERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLV   87 (171)
T ss_dssp             EEEECCGGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEE
T ss_pred             EEEECCHHHHHHHHHHHHHHC--CCCCEEEEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf             999948899999999999848--987659997224135676776501334433343332114566553211368631101


Q ss_pred             ECC--CCCCCCCCEEEEEECCCCC-C-CHH---------HCCCEEEEEECCC
Q ss_conf             328--6678998199998168778-2-113---------1175799997598
Q gi|254780391|r   78 TIS--SLNANTSTIRFLVDEASMH-I-GDV---------DYYEKVVFIINTD  116 (141)
Q Consensus        78 ~~~--~~~~~~~~~~~linl~~~~-p-~~~---------~~f~rvieiv~~~  116 (141)
                      +++  ....+-.++..+||..... + .+.         .+-..++-+|.+.
T Consensus        88 ~Td~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~v~~~  139 (171)
T d1s2ma2          88 CSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWN  139 (171)
T ss_dssp             ESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGG
T ss_pred             CHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEECHH
T ss_conf             2017654104662489996487602777877755314179961799985789


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]