BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780391|ref|YP_003064804.1| DNA polymerase III subunit chi
[Candidatus Liberibacter asiaticus str. psy62]
         (141 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780391|ref|YP_003064804.1| DNA polymerase III subunit chi [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 141

 Score =  291 bits (746), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 141/141 (100%), Positives = 141/141 (100%)

Query: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60
           MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG
Sbjct: 1   MRTLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60

Query: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120
           VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS
Sbjct: 61  VDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGS 120

Query: 121 LEWGRAHWRSLKNSGYAPDVI 141
           LEWGRAHWRSLKNSGYAPDVI
Sbjct: 121 LEWGRAHWRSLKNSGYAPDVI 141


>gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 504

 Score = 24.3 bits (51), Expect = 0.94,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 84  ANTSTIR-FLVDEASMHIGDVDYY-----EKVVFIINTDDQGSLEWGRAHWRSLKNSG 135
           AN  T++ FL D+  +    V  Y      + V IINT+D G + +G A  R+L   G
Sbjct: 78  ANPVTVKTFLSDQDMLGELTVPQYLARLASEAVSIINTEDYGRIIYGLALRRTLITIG 135


>gi|254781074|ref|YP_003065487.1| uracil-DNA glycosylase [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 227

 Score = 21.9 bits (45), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 2  RTLLFYRFKNDWEYNLLVLLQDEYEKGKRV 31
          ++LL   F+++   NL   L  E  KGKR+
Sbjct: 11 KSLLENHFQSEHMRNLKEFLLSEKRKGKRI 40


>gi|254780933|ref|YP_003065346.1| valyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 947

 Score = 21.2 bits (43), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 41  RDSLNEYLWTWKKDG 55
           RD+  E +W WKK+ 
Sbjct: 111 RDAFIEKVWEWKKES 125


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.138    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,937
Number of Sequences: 1233
Number of extensions: 3776
Number of successful extensions: 7
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 141
length of database: 328,796
effective HSP length: 66
effective length of query: 75
effective length of database: 247,418
effective search space: 18556350
effective search space used: 18556350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 34 (17.7 bits)