HHsearch alignment of GI: 254780392 and MMDB domain: 3isz_A_1-177_299-377
>3isz_A (A:1-177,A:299-377) Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2; 2.00A {Haemophilus influenzae rd KW20} PDB: 3ic1_A
Probab=92.47 E-value=0.33 Score=28.10 Aligned_cols=186 Identities=15% Similarity=0.049 Sum_probs=98.8
Q ss_pred HHHHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 9999864202125403029999999998-611332100001110001345898874202577850688620578865651
Q gi|254780392|r 176 KGVNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQP 254 (494)
Q Consensus 176 egv~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~~p 254 (494)
+-+.+.|+|++.|.--......++..++ |++.|+++++.+... +..+-...+...|+.++..++.--.
T Consensus 4 ~~i~~l~~lv~ips~s~~e~~~~~~i~~~l~~~G~~~~~~~~~~------~~~~~~~~~~~~~~i~l~~h~d~v~----- 72 (256)
T 3isz_A 4 KVVSLAQDLIRRPSISPNDEGCQQIIAERLEKLGFQIEWMPFND------TLNLWAKHGTSEPVIAFAGHTDVVP----- 72 (256)
T ss_dssp HHHHHHHHHHTSCCBTTCCTTHHHHHHHHHHHTTCEEEECCBTT------BCEEEEEEESSSCEEEEEEECCBCC-----
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECC------EEEEEEECCCCCCEEEEECCCCCCC-----
T ss_conf 99999999947999798858999999999997799489998199------8899998689998799979888589-----
Q ss_pred EEEEECCEEECCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHCCC--CCCEEEEEEECCCC--CCCCCCCHHHHHC
Q ss_conf 2663021120066310033332002-32211235689999999987087--87289986410266--8999747077630
Q gi|254780392|r 255 LAFIGKGVVFDTGGISIKPSHGMEE-MKGDLGGAAAVTGLLHVLAERKA--KINAIGVLALVENM--PGSSAQRPGDIVR 329 (494)
Q Consensus 255 iaLVGKGvTFDtGGislKp~~~M~~-Mk~DM~GaAav~g~~~aia~l~~--~v~v~~~~~~~EN~--~~~~a~~pgdvi~ 329 (494)
.-.+...+||.-....+...-.-. .--|.+|.|+++.+++++.+.+. +.+|+.+.-..|-. .++..+
T Consensus 73 -~~~~~~~~~~~~~~~~~~~~~~g~G~~D~k~g~a~~l~a~~~l~~~~~~~~~~i~~~f~~~EE~G~~~g~~~------- 144 (256)
T 3isz_A 73 -TGDENQWSSPPFSAEIIDGMLYGRGAADMKGSLAAMIVAAEEYVKANPNHKGTIALLITSDEEATAKDGTIH------- 144 (256)
T ss_dssp -CCCGGGCSSCTTSCCEETTEEESTTTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSSCCSSSHHH-------
T ss_pred -CCCCCCCCCCCCCEEEECCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHH-------
T ss_conf -887643432233315743753010244443321014677898776404777337750000112110477224-------
Q ss_pred CCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH-HCCCC
Q ss_conf 24895888634786640365236788752079613552111200235431776057870898999999998998-56971
Q gi|254780392|r 330 SMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLS-TGELL 408 (494)
Q Consensus 330 ~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ATLTGa~~~alG~~~~g~~~n~~~~~~~~~~a~~~-~ge~~ 408 (494)
+.+... ....+++.+|..-.-.+-. .....+..+.+.+.+.++.+. .|.+.
T Consensus 145 -------------------~~~~~~--~~~~~~d~~i~~e~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~g~~~ 196 (256)
T 3isz_A 145 -------------------VVETLM--ARDEKITYCMVGEPSSAKN-------LGDVVKNGGKLLDSITSAIEETIGITP 196 (256)
T ss_dssp -------------------HHHHHH--HTTCCCCEEEECCCCBSSS-------TTSEEEEETHHHHHHHHHHHHHHSCCC
T ss_pred -------------------HHHHHH--HCCCCCEEEEEECCCCCCC-------CCCEEEEECHHHHHHHHHHHHHHCCCC
T ss_conf -------------------456665--2467734999947888655-------774477714599999999999878997