Query gi|254780392|ref|YP_003064805.1| leucyl aminopeptidase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 494 No_of_seqs 253 out of 1989 Neff 7.4 Searched_HMMs 33803 Date Wed Jun 1 13:01:19 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780392.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3kr4_A M17 leucyl aminopeptid 100.0 0 0 966.3 26.6 324 165-494 2-330 (335) 2 >1gyt_A Cytosol aminopeptidase 100.0 0 0 959.4 28.7 328 161-493 3-334 (339) 3 >3ij3_A Cytosol aminopeptidase 100.0 0 0 954.4 27.4 322 166-493 1-325 (325) 4 >2hc9_A Leucine aminopeptidase 100.0 0 0 946.8 27.6 322 165-494 3-332 (337) 5 >3kzw_A Cytosol aminopeptidase 100.0 0 0 918.1 24.6 300 191-491 1-303 (303) 6 >1lam_A Leucine aminopeptidase 100.0 0 0 890.4 26.9 302 191-493 1-308 (308) 7 >3kzw_A Cytosol aminopeptidase 99.9 7.7E-26 2.3E-30 201.9 16.4 182 2-190 24-212 (212) 8 >1lam_A Leucine aminopeptidase 99.8 9E-22 2.7E-26 173.2 2.3 164 15-190 1-176 (176) 9 >1gyt_A Cytosol aminopeptidase 99.8 3.5E-18 1E-22 147.9 14.5 147 1-147 1-154 (164) 10 >3ij3_A Cytosol aminopeptidase 99.5 3.8E-14 1.1E-18 119.4 5.2 122 11-145 31-152 (157) 11 >3kr4_A M17 leucyl aminopeptid 97.7 0.0044 1.3E-07 41.3 14.9 138 5-143 31-176 (193) 12 >3isz_A Succinyl-diaminopimela 92.5 0.33 9.7E-06 28.1 5.6 186 176-408 4-196 (256) 13 >3gb0_A Peptidase T; NP_980509 91.9 0.42 1.3E-05 27.3 5.6 180 176-412 7-199 (254) 14 >2pok_A Peptidase, M20/M25/M40 91.8 0.99 2.9E-05 24.7 12.5 120 175-316 44-183 (256) 15 >1fno_A Peptidase T; metallo p 90.8 1.2 3.6E-05 24.1 9.8 192 178-416 5-233 (295) 16 >3kl9_A PEPA, glutamyl aminope 89.3 1.6 4.7E-05 23.3 8.3 109 178-315 6-120 (260) 17 >1cg2_A Carboxypeptidase G2; m 88.6 1.8 5.3E-05 22.9 9.8 121 175-316 19-155 (234) 18 >1vhe_A Aminopeptidase/glucana 88.1 1.7 4.9E-05 23.1 6.1 178 177-413 9-203 (279) 19 >2qyv_A XAA-His dipeptidase; Y 87.8 2 5.9E-05 22.6 6.5 126 176-317 12-149 (215) 20 >1ylo_A Hypothetical protein S 85.9 1.6 4.6E-05 23.3 4.9 174 178-410 6-193 (263) 21 >3io1_A Aminobenzoyl-glutamate 85.2 2.5 7.5E-05 21.8 5.7 183 178-407 52-243 (325) 22 >2rb7_A Peptidase, M20/M25/M40 85.1 2.7 8E-05 21.6 7.7 125 175-317 6-142 (218) 23 >2gre_A Deblocking aminopeptid 84.5 2.9 8.5E-05 21.4 6.9 113 176-316 7-124 (251) 24 >1ysj_A Protein YXEP; M20 fami 81.6 3.7 0.00011 20.7 5.9 128 175-320 32-163 (276) 25 >1xmb_A IAA-amino acid hydrola 81.1 3.8 0.00011 20.6 5.7 180 175-406 28-220 (304) 26 >1vho_A Endoglucanase; structu 80.0 3.7 0.00011 20.6 4.9 173 177-411 7-189 (259) 27 >1rtq_A Bacterial leucyl amino 79.1 4.4 0.00013 20.1 8.7 125 175-316 20-153 (299) 28 >3ct9_A Acetylornithine deacet 74.6 5.8 0.00017 19.3 9.4 127 175-320 11-143 (211) 29 >2zog_A Cytosolic non-specific 70.4 7.2 0.00021 18.6 7.5 135 175-321 20-179 (236) 30 >1y8t_A Hypothetical protein R 69.7 2.2 6.4E-05 22.3 1.5 33 305-337 17-50 (99) 31 >1te0_A Protease DEGS; two dom 69.1 2.3 6.9E-05 22.1 1.6 59 300-369 19-79 (99) 32 >2cf4_A Protein PH0519, phtet1 68.0 8 0.00024 18.3 5.7 108 178-316 5-115 (240) 33 >1vgy_A Succinyl-diaminopimela 65.9 8.8 0.00026 18.0 8.2 126 176-316 7-139 (271) 34 >1q7l_A Aminoacylase-1; cataly 63.8 9.6 0.00028 17.7 11.4 126 176-322 11-157 (198) 35 >3i18_A LMO2051 protein; alpha 60.9 2.1 6.1E-05 22.5 0.0 33 305-337 7-39 (100) 36 >3gux_A Putative Zn-dependent 55.9 13 0.00038 16.8 4.7 124 178-323 30-172 (314) 37 >2hga_A Conserved protein MTH1 54.3 4 0.00012 20.4 0.6 32 307-338 27-58 (125) 38 >1ky9_A Protease DO, DEGP, HTR 52.3 4.5 0.00013 20.1 0.6 41 298-338 16-58 (186) 39 >3dlj_A Beta-Ala-His dipeptida 51.7 15 0.00044 16.4 9.6 135 175-318 25-181 (267) 40 >2joa_A Serine protease HTRA1; 50.5 1.9 5.8E-05 22.6 -1.5 36 302-337 32-68 (105) 41 >3c3d_A 2-phospho-L-lactate tr 49.4 8.7 0.00026 18.1 1.7 28 167-194 102-129 (311) 42 >2zpm_A Regulator of sigma E p 49.3 3 9E-05 21.3 -0.7 17 322-338 3-19 (65) 43 >2i4s_A General secretion path 48.3 1.6 4.7E-05 23.3 -2.2 31 307-337 39-70 (105) 44 >3c75_A Amicyanin; copper prot 47.5 8.2 0.00024 18.2 1.3 69 280-348 3-82 (132) 45 >2kl1_A YLBL protein; structur 47.2 4.6 0.00014 20.0 0.0 30 308-337 8-37 (94) 46 >2ba0_A Archeal exosome RNA bi 47.1 18 0.00052 15.9 3.5 50 301-350 23-72 (82) 47 >2qbw_A PDZ-fibronectin fusion 46.7 8.3 0.00024 18.2 1.2 35 304-338 23-57 (102) 48 >2ytw_A Serine protease HTRA1; 46.5 9 0.00027 18.0 1.4 37 301-337 23-60 (91) 49 >2ehr_A INAD-like protein; PDZ 46.0 8.1 0.00024 18.3 1.1 33 307-339 52-86 (117) 50 >2pzd_A Serine protease HTRA2; 44.7 2.7 7.9E-05 21.7 -1.5 36 303-338 33-69 (113) 51 >2w4f_A Protein LAP4; structur 44.6 2.3 6.7E-05 22.2 -1.9 34 305-338 34-68 (97) 52 >1wkv_A Cysteine synthase; hom 44.0 19 0.00058 15.6 3.4 28 284-311 63-90 (192) 53 >1mfg_A ERB-B2 interacting pro 43.8 9.8 0.00029 17.7 1.2 37 304-340 34-70 (95) 54 >3k50_A Putative S41 protease; 43.5 3.5 0.0001 20.9 -1.1 38 300-337 14-53 (101) 55 >2i6v_A General secretion path 43.5 1.7 5.1E-05 23.0 -2.7 33 305-337 19-52 (87) 56 >2fvg_A Endoglucanase; TM1049, 42.9 3.4 0.0001 20.9 -1.2 104 180-314 3-109 (252) 57 >1n7t_A 99-MER peptide of dens 42.5 7.2 0.00021 18.6 0.4 34 307-340 45-78 (103) 58 >2p3w_A Probable serine protea 42.2 3 8.7E-05 21.4 -1.6 35 303-337 33-68 (112) 59 >1lcy_A HTRA2 serine protease; 41.4 3.1 9.2E-05 21.2 -1.6 38 301-338 35-73 (108) 60 >2fgy_A Carboxysome shell poly 39.2 15 0.00045 16.4 1.6 37 195-231 118-158 (175) 61 >3l4f_D SH3 and multiple ankyr 36.4 8 0.00024 18.3 -0.1 33 306-338 66-99 (132) 62 >2v90_A PDZ domain-containing 34.9 4.7 0.00014 19.9 -1.5 32 307-338 32-64 (96) 63 >1y0y_A FRV operon protein FRV 34.5 27 0.0008 14.6 4.0 105 178-316 9-120 (259) 64 >2sns_A Thermonuclease precurs 34.3 25 0.00074 14.8 2.1 27 324-350 11-37 (149) 65 >1x5q_A LAP4 protein; PDZ doma 34.0 4.2 0.00012 20.3 -1.9 33 305-337 46-79 (110) 66 >1wh1_A KIAA1095 protein; PDZ 32.9 5.9 0.00017 19.3 -1.3 31 307-337 50-82 (124) 67 >1x1q_A Tryptophan synthase be 31.5 30 0.00089 14.2 2.7 32 280-311 123-154 (172) 68 >2kjp_A Uncharacterized protei 31.2 10 0.00031 17.5 -0.3 28 310-337 6-33 (91) 69 >1k32_A Tricorn protease; prot 31.0 8.1 0.00024 18.3 -0.8 26 312-337 30-57 (95) 70 >2gim_A Plastocyanin; beta she 30.9 23 0.00069 15.0 1.5 33 314-346 8-40 (106) 71 >3kre_A Phosphoribosylaminoimi 30.8 15 0.00045 16.3 0.5 93 228-355 22-116 (136) 72 >2h2b_A Tight junction protein 30.3 20 0.00058 15.6 1.0 34 304-337 38-71 (107) 73 >1uew_A Membrane associated gu 30.1 10 0.0003 17.6 -0.5 30 308-337 46-77 (114) 74 >2ego_A General receptor for p 30.1 6.5 0.00019 18.9 -1.5 36 305-340 37-73 (96) 75 >2yt7_A Amyloid beta A4 precur 30.0 15 0.00044 16.4 0.3 31 307-337 39-71 (101) 76 >2cs5_A Tyrosine-protein phosp 29.5 18 0.00054 15.8 0.7 32 307-338 43-77 (119) 77 >2vpu_A TET3, 354AA long hypot 29.0 33 0.00097 14.0 3.8 173 178-412 12-195 (259) 78 >3k1r_A Harmonin; protein-prot 29.0 6.8 0.0002 18.8 -1.5 33 307-339 31-64 (111) 79 >2ixa_A Alpha-N-acetylgalactos 29.0 17 0.0005 16.0 0.5 20 321-340 124-147 (213) 80 >1v5l_A PDZ and LIM domain 3; 28.8 12 0.00035 17.1 -0.3 33 307-339 31-64 (103) 81 >3khf_A Microtubule-associated 28.4 7.4 0.00022 18.6 -1.4 30 308-337 37-67 (99) 82 >2cyj_A Hypothetical protein P 28.4 30 0.00087 14.3 1.7 15 68-82 60-74 (118) 83 >2csj_A TJP2 protein; PDZ doma 28.3 6.8 0.0002 18.8 -1.6 32 307-338 48-79 (117) 84 >2edz_A PDZ domain-containing 27.8 14 0.00042 16.6 -0.1 29 309-337 42-71 (114) 85 >2gf3_A MSOX, monomeric sarcos 27.5 21 0.00061 15.4 0.7 120 194-318 11-161 (161) 86 >1gmu_A UREE; metallochaperone 27.3 25 0.00073 14.8 1.1 26 314-339 42-67 (69) 87 >2yxt_A Pyridoxal kinase; beta 27.2 32 0.00094 14.1 1.6 13 255-267 228-240 (312) 88 >1x5n_A Harmonin; PDZ domain, 27.1 24 0.00072 14.9 1.0 34 307-340 43-77 (114) 89 >2ek8_A Aminopeptidase; metall 27.0 36 0.0011 13.7 8.0 153 176-345 17-177 (294) 90 >2q3g_A PDZ and LIM domain pro 26.5 7.5 0.00022 18.5 -1.7 33 307-339 29-62 (89) 91 >2kjd_A Sodium/hydrogen exchan 26.2 8.6 0.00025 18.1 -1.4 15 322-336 51-65 (128) 92 >3cyy_A Tight junction protein 25.8 8.7 0.00026 18.0 -1.4 30 308-337 26-57 (92) 93 >2jxo_A Ezrin-radixin-moesin-b 25.8 8.8 0.00026 18.0 -1.4 30 308-337 36-66 (98) 94 >1l1c_A Transcription antiterm 25.3 29 0.00087 14.3 1.2 13 253-265 20-32 (55) 95 >1rl2_A Protein (ribosomal pro 24.8 7.6 0.00022 18.5 -1.9 30 306-341 40-69 (137) 96 >3id1_A Regulator of sigma E p 24.6 15 0.00045 16.3 -0.4 14 323-336 5-18 (64) 97 >1tkj_A Aminopeptidase, SGAP; 24.5 39 0.0012 13.4 2.7 142 178-346 10-164 (284) 98 >2axq_A Saccharopine dehydroge 24.3 40 0.0012 13.4 4.5 116 65-204 20-135 (196) 99 >1pcs_A Plastocyanin; electron 24.2 39 0.0012 13.5 1.6 37 314-350 7-43 (98) 100 >1nwp_A Azurin; electron trans 24.0 40 0.0012 13.4 1.6 29 316-344 9-39 (128) 101 >2plt_A Plastocyanin; electron 23.5 40 0.0012 13.4 1.6 40 316-355 8-47 (98) 102 >2fcf_A Multiple PDZ domain pr 23.1 8.6 0.00025 18.1 -1.9 33 306-338 40-74 (103) 103 >1i16_A Interleukin 16, LCF; c 22.8 26 0.00077 14.7 0.5 32 306-337 58-91 (130) 104 >1zvu_A Topoisomerase IV subun 22.6 26 0.00077 14.7 0.5 10 67-76 47-56 (156) 105 >2yub_A LIMK-2, LIM domain kin 22.6 24 0.0007 15.0 0.3 29 309-337 48-79 (118) 106 >1g9o_A NHE-RF; PDZ domain, co 22.2 11 0.00033 17.3 -1.5 29 309-337 31-60 (91) 107 >1itz_A Transketolase; calvin 21.7 44 0.0013 13.1 1.6 39 66-111 10-48 (125) 108 >2vwr_A Ligand of NUMB protein 21.6 12 0.00035 17.1 -1.4 30 308-337 32-63 (95) 109 >1m5z_A GRIP, AMPA receptor in 21.2 12 0.00036 17.0 -1.4 29 309-337 36-65 (91) 110 >1jqg_A Carboxypeptidase A; Pr 20.8 16 0.00047 16.2 -0.9 53 165-217 37-90 (91) 111 >3dmq_A RNA polymerase-associa 20.4 35 0.001 13.8 0.8 20 324-343 1-20 (58) 112 >1q3o_A Shank1; PDZ, GKAP, pep 20.4 22 0.00065 15.2 -0.3 33 307-339 47-80 (109) 113 >3cpk_A Uncharacterized protei 20.2 43 0.0013 13.1 1.2 14 69-82 89-102 (150) 114 >1wg6_A Hypothetical protein ( 20.2 16 0.00047 16.2 -1.0 30 308-337 58-89 (127) 115 >1bxs_A Aldehyde dehydrogenase 20.1 48 0.0014 12.8 1.5 60 387-460 244-306 (310) 116 >2he4_A Na(+)/H(+) exchange re 20.0 13 0.0004 16.7 -1.4 30 308-337 31-61 (90) No 1 >>3kr4_A M17 leucyl aminopeptidase; protease, hydrolase; HET: BES 1PE; 2.00A {Plasmodium falciparum} PDB: 3kqz_A* 3kqx_A* 3kr5_A* (A:194-528) Probab=100.00 E-value=0 Score=966.31 Aligned_cols=324 Identities=38% Similarity=0.607 Sum_probs=314.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHH-HCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEE Q ss_conf 9999999999999998642021254030299999999986-113321000011100013458988742025778506886 Q gi|254780392|r 165 SQVVADIQSVVKGVNLARDIINEPANVLGTDEFCKQVRKL-ESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVM 243 (494) Q Consensus 165 ~~~i~~~~aiaegv~lARDLvN~PaN~ltP~~lA~~a~~l-~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l 243 (494) ++.+++++++++|+++||||+|+|||+|||++||++++++ +++|++|+|+++++|+++|||+|++|||||.+|||||+| T Consensus 2 e~~~~~~~~~a~g~~lARdL~n~P~N~ltP~~~a~~a~~~~~~~gv~v~V~~~~~l~~~gmg~~laVg~GS~~~p~li~l 81 (335) T 3kr4_A 2 KEEVEKARVYYFGTYYASQLIAAPSNYCNPVSLSNAAVELAQKLNLEYKILGVKELEELKMGAYLSVGKGSMYPNKFIHL 81 (335) T ss_dssp THHHHHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTCEEEEECHHHHHHTTCHHHHHHGGGCSSCCEEEEE T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCCCEEEEECCCCCCCEEEEE T ss_conf 99999999999999999987268962149999999999999872987999639999867998468761478898727999 Q ss_pred ECCCCCCCCCCEEEEECCEEECCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEEEEECCCCCCCC Q ss_conf 20578865651266302112006631003--33320023221123568999999998708-7872899864102668999 Q gi|254780392|r 244 KWEGGDSEEQPLAFIGKGVVFDTGGISIK--PSHGMEEMKGDLGGAAAVTGLLHVLAERK-AKINAIGVLALVENMPGSS 320 (494) Q Consensus 244 ~Y~g~~~~~~piaLVGKGvTFDtGGislK--p~~~M~~Mk~DM~GaAav~g~~~aia~l~-~~v~v~~~~~~~EN~~~~~ 320 (494) +|+|++++++||+|||||||||||||||| |+.+|++||+||||||+|+|+|+++++|+ +|+||++++|+||||||++ T Consensus 82 ~Y~g~~~~~~~i~LVGKGiTFDtGG~slK~~P~~~M~~Mk~DM~GAAaVlga~~aia~l~~l~vnv~a~l~~~EN~i~~~ 161 (335) T 3kr4_A 82 TYKSKGDVKKKIALVGKGITFDSGGYNLKAAPGSMIDLMKFDMSGCAAVLGCAYCVGTLKPENVEIHFLSAVCENMVSKN 161 (335) T ss_dssp EEECSSCCCEEEEEEEEEEEEECCTTSCSCSTTCCGGGGGGGGHHHHHHHHHHHHHHHHCCSSEEEEEEEEEEEECCSTT T ss_pred EECCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHCCCCC T ss_conf 97136777886665566668765885356686104787650143489999999999984358813899733443067998 Q ss_pred CCCHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEECCHHHHHHHHHH Q ss_conf 74707763024895888634786640365236788752079613552111200235431776057870898999999998 Q gi|254780392|r 321 AQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSS 400 (494) Q Consensus 321 a~~pgdvi~~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ATLTGa~~~alG~~~~g~~~n~~~~~~~~~~a 400 (494) |||||||||+||||||||.||||||||||||+|+|| ++|+|+.|||+|||||||++|||++++|+|||||++++++++| T Consensus 162 a~kPgDVi~s~nGkTVEI~NTDAEGRLvLADal~~a-~~~~p~~iiDiATLTGa~~~ALG~~~ag~~sn~~~l~~~l~~a 240 (335) T 3kr4_A 162 SYRPGDIITASNGKTIEVGNTDAEGRLTLADALVYA-EKLGVDYIVDIATLTGAMLYSLGTSYAGVFGNNEELINKILQS 240 (335) T ss_dssp SCCTTCEEECTTSCEEECSCTTCCHHHHHHHHHHHH-HHTCCSEEEEEECCCTTHHHHTTTTCEEEEESCHHHHHHHHHH T ss_pred CCCCCCEEECCCCCEEEEECCCCCCEEEEEHHHHHH-HCCCCCCEEEEHHHHHHHHECCCCCEEEEEECCHHHHHHHHHH T ss_conf 879988116169967986348852004540288897-5339950111011221302404896179996999999999999 Q ss_pred HHHHCCCCCCCCCCHHHHHHHCCCCCCEECCC-CCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCC Q ss_conf 99856971767768678886179864170188-87467999999998723886769994000011678888889986543 Q gi|254780392|r 401 GLSTGELLWRMPMNEEYNKLIESKFADMKNIG-GRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPKEINQSWASGF 479 (494) Q Consensus 401 ~~~~ge~~w~lPl~~~y~~~~~s~~AD~~n~~-~~~~g~~~aa~fl~~f~~~~~w~HlDiag~a~~~~~~~~~~~g~tg~ 479 (494) |+.+||++||||||++|+++++|++||++|++ ++.||+|+||+||++||+++||+|||||||+| .+.|+|+||| T Consensus 241 g~~~ge~~W~lPl~~~y~~~i~s~~AD~~N~~~~~~~g~~~Aa~FL~~Fv~~~~W~HlDIAg~a~-----~~~~~g~TG~ 315 (335) T 3kr4_A 241 SKTSNEPVWWLPIINEYRATLNSKYADINQISSSVKASSIVASLFLKEFVQNTAWAHIDIAGVSW-----NFKARKPKGF 315 (335) T ss_dssp HHHHTCCEEECCCCGGGGGGGCCSSSSEESSCSSCCCHHHHHHHHHHTTCSSSEEEEEECTTTSE-----ETTTTEECCT T ss_pred HHHHCCCEEECCCCHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCC-----CCCCCCCCCH T ss_conf 99849976408998888977699688741789689724179999999767997989995687588-----8999895413 Q ss_pred CHHHHHHHHHHHCCC Q ss_conf 589999999976689 Q gi|254780392|r 480 GVRLLDEFVRAFYEK 494 (494) Q Consensus 480 ~vr~l~~~~~~~~~~ 494 (494) |||||+||++++.++ T Consensus 316 gvr~L~~~l~~~a~~ 330 (335) T 3kr4_A 316 GVRLLTEFVLNDALH 330 (335) T ss_dssp THHHHHHHHHHC--- T ss_pred HHHHHHHHHHHHHHH T ss_conf 199999999852433 No 2 >>1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A {Escherichia coli} (A:165-503) Probab=100.00 E-value=0 Score=959.37 Aligned_cols=328 Identities=44% Similarity=0.758 Sum_probs=316.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHH-HCCC--CCHHHHCCCCCCHHHHHHHHHHHCCCCCC Q ss_conf 37899999999999999998642021254030299999999986-1133--21000011100013458988742025778 Q gi|254780392|r 161 IQQSSQVVADIQSVVKGVNLARDIINEPANVLGTDEFCKQVRKL-ESLG--VAVEILDKEAMHKLGMNALLAVAQGSSRP 237 (494) Q Consensus 161 ~~~~~~~i~~~~aiaegv~lARDLvN~PaN~ltP~~lA~~a~~l-~~~g--l~v~Vld~~~L~klGMg~llaVgqGS~~~ 237 (494) ....++.+++++++++|+++||||+|+|||+|||++||++++++ +++| ++|+|+++++|+++|||+||+|||||.+| T Consensus 3 ~~~~~~~~~~~~~~a~~~~~ARdL~n~P~n~ltP~~~ae~a~~~~~~~g~~v~v~Vl~~~~l~e~gmg~~laVgkgS~~p 82 (339) T 1gyt_A 3 LTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNE 82 (339) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCSHHHHHHHHHHHHHHTTTTEEEEEECHHHHHHTTCHHHHHHHHTSSSC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCCCCCCEEEECCCCCCC T ss_conf 48899999999999999999985248997585210799999998752489549999237874014762020002466789 Q ss_pred CEEEEEECCCCCC-CCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC Q ss_conf 5068862057886-565126630211200663100333320023221123568999999998708787289986410266 Q gi|254780392|r 238 PYLAVMKWEGGDS-EEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENM 316 (494) Q Consensus 238 Prli~l~Y~g~~~-~~~piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN~ 316 (494) ||||+|+|+|.+. .++||+|||||||||||||||||+.+|++||+||||||+|+|+|+++++|++|+||++++|+|||| T Consensus 83 P~li~l~Y~g~~~~~~~~i~lVGKGiTfDtGG~~lKp~~~M~~Mk~DM~GAAaVlga~~a~a~l~~~~nv~avl~l~EN~ 162 (339) T 1gyt_A 83 SLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENM 162 (339) T ss_dssp CEEEEEEEECCCCTTCCCEEEEEEEEEEECCTTSCCCSTTGGGGGGGGHHHHHHHHHHHHHHHHTCSSEEEEEEEEEEEC T ss_pred CCEEEEEECCCCCCCCCCEEEECCEEEEECCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHC T ss_conf 85458862587766677579873467860688543466784448121468999999999999859986669994326437 Q ss_pred CCCCCCCHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEECCHHHHHH Q ss_conf 89997470776302489588863478664036523678875207961355211120023543177605787089899999 Q gi|254780392|r 317 PGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQ 396 (494) Q Consensus 317 ~~~~a~~pgdvi~~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ATLTGa~~~alG~~~~g~~~n~~~~~~~ 396 (494) ||++|||||||||+||||||||.||||||||||||+|+|| ++++|+.|||+|||||||++|||+.++|+|+|||+++++ T Consensus 163 i~~~a~~PgDVi~s~~GkTVEI~NTDAEGRLvLADaL~ya-~~~~p~~iiDiATLTGa~~~aLG~~~ag~~sn~d~l~~~ 241 (339) T 1gyt_A 163 PGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYV-ERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHE 241 (339) T ss_dssp CSTTCCCTTCEEECTTSCEEECSCTTCCHHHHHHHHHHHG-GGGCCSEEEEEECCCHHHHHHHTTTSEEEEESCHHHHHH T ss_pred CCCCCCCCCCEEEECCCCEEEEECCCCHHHHHHHHHHHHH-HHHCCCEEEEEECCCCCCHHHCCCCCCCCCCCCHHHHHH T ss_conf 7899888888788179988998378816766436799998-761998377640025503310388611120598999999 Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCC Q ss_conf 99989985697176776867888617986417018887467999999998723886769994000011678888889986 Q gi|254780392|r 397 LLSSGLSTGELLWRMPMNEEYNKLIESKFADMKNIGGRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPKEINQSWA 476 (494) Q Consensus 397 ~~~a~~~~ge~~w~lPl~~~y~~~~~s~~AD~~n~~~~~~g~~~aa~fl~~f~~~~~w~HlDiag~a~~~~~~~~~~~g~ 476 (494) +++||+.+||++||||||++|+++++|++|||+|+++|.+|+|+||+||+|||+++||+|||||||+| .++.++|+ T Consensus 242 ~~~ag~~~gE~~W~lPl~~~y~~~l~S~~ADl~N~~~~~~g~~~AA~FL~~Fv~~~~W~HlDIAg~a~----~~~~~~ga 317 (339) T 1gyt_A 242 LIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAW----RSGKAKGA 317 (339) T ss_dssp HHHHHHHHTCCEEECCCCHHHHGGGCCSSSSEESCCCSTTHHHHHHHHHHTTCTTSCEEEEECTTTSE----ECGGGCEE T ss_pred HHHHHHHHCCCEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC----CCCCCCCC T ss_conf 99999982997632899888997769962010078999623899999999767998979995677765----89999894 Q ss_pred CCCCHHHHHHHHHHHCC Q ss_conf 54358999999997668 Q gi|254780392|r 477 SGFGVRLLDEFVRAFYE 493 (494) Q Consensus 477 tg~~vr~l~~~~~~~~~ 493 (494) ||||||||+||+++... T Consensus 318 TG~gvr~L~~~l~~~a~ 334 (339) T 1gyt_A 318 TGRPVALLAQFLLNRAG 334 (339) T ss_dssp CCTTHHHHHHHHHHHTT T ss_pred CCHHHHHHHHHHHHHHC T ss_conf 13699999999997756 No 3 >>3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family, IDP01962, cytoplasm, hydrolase, manganese, metal-binding, protease, structural genomics; HET: PGE PG4; 1.80A {Coxiella burnetii} (A:158-482) Probab=100.00 E-value=0 Score=954.36 Aligned_cols=322 Identities=36% Similarity=0.601 Sum_probs=311.6 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHH-HCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEE Q ss_conf 999999999999998642021254030299999999986-1133210000111000134589887420257785068862 Q gi|254780392|r 166 QVVADIQSVVKGVNLARDIINEPANVLGTDEFCKQVRKL-ESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMK 244 (494) Q Consensus 166 ~~i~~~~aiaegv~lARDLvN~PaN~ltP~~lA~~a~~l-~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~ 244 (494) .++++++++++|+++||||+|+|||+|||++||++++++ ++++++|+|+|+++|++ |||+|++|||||.+|||||+|+ T Consensus 1 a~~~~~~~~a~g~~~ARdL~n~P~n~ltP~~~a~~a~~~~~~~g~~v~V~~~~~le~-gmg~~laVg~gS~~pP~~i~l~ 79 (325) T 3ij3_A 1 AHRKRVTDWLTTIYLIRDLINTPAEDMGPSELAQAVKHVAKEFEAKVKIIESKDLET-EFPAIYAVGRAGSRPPLLIDLK 79 (325) T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCGGGSSHHHHHHHHHHHHHHHTCEEEEEEHHHHHH-HCHHHHHHHTTSSSCCEEEEEE T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHC-CCCCEEEEECCCCCCCEEEEEE T ss_conf 018999999999999998726893547999999999999976599799974999872-5876220105568997799997 Q ss_pred CCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCH Q ss_conf 05788656512663021120066310033332002322112356899999999870878728998641026689997470 Q gi|254780392|r 245 WEGGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSSAQRP 324 (494) Q Consensus 245 Y~g~~~~~~piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN~~~~~a~~p 324 (494) |+|.+ ++||+|||||||||||||||||+.+|++||+||||||+|+|+|+++++|++|+||++++|+||||||++|||| T Consensus 80 Y~~~~--~~~i~lVGKGitfDtGG~~LKp~~~M~~Mk~DM~GAAaV~ga~~a~a~l~~~~nv~~il~l~EN~i~~~A~~P 157 (325) T 3ij3_A 80 WGDIK--APKVTLVGKGVCFDSGGLDIKTPGGMLLMKKDMGGAAHALGLARMIMLQQLPVRLRLLIPAVENAIGSRSYRP 157 (325) T ss_dssp ESCTT--SCEEEEEECEEEEECCTTSCCCHHHHTTGGGGGHHHHHHHHHHHHHHHTTCSSEEEEEEEEEEECCSTTCCCT T ss_pred ECCCC--CCEEEEEECCEEEECCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCC T ss_conf 04899--9769997065798379756467256887765048899999999999973999379999983125868788899 Q ss_pred HHHHCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHH Q ss_conf 77630248958886347866403652367887520796135521112002354317760578708989999999989985 Q gi|254780392|r 325 GDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLST 404 (494) Q Consensus 325 gdvi~~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ATLTGa~~~alG~~~~g~~~n~~~~~~~~~~a~~~~ 404 (494) |||||+||||||||.||||||||||||+|+|| ++|+|+.|||+|||||||++|||.+++|+|||||+|++++++||+.+ T Consensus 158 gDVit~~nGkTVEI~NTDAEGRLvLADaL~yA-~~~~p~~iiD~ATLTGa~~~aLG~~~ag~~sn~d~l~~~l~~Ag~~~ 236 (325) T 3ij3_A 158 GDVVQTRARKTIEITNTDAEGRVVLADALAEA-VKEDPDLIIDFSTLTGAARIALGPNLPALFANQDSLAQALIDASLKT 236 (325) T ss_dssp TCEEECTTSCEEECSCTTCCHHHHHHHHHHHH-HTTCCSEEEEEEECCSGGGCTTCTTSCEEEESSHHHHHHHHHHHHHH T ss_pred CCEEEECCCCEEEEECCCCCCEEEEHHHHHHH-HHCCCCEEEECCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHC T ss_conf 87788169978987326863005541167777-75099889980045878998738983488729989999999999973 Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCEECCC-CCCHHHHHHHHHHHHHCC-CCCEEEEEEEECCCCCCCCCCCCCCCCCCCHH Q ss_conf 6971767768678886179864170188-874679999999987238-86769994000011678888889986543589 Q gi|254780392|r 405 GELLWRMPMNEEYNKLIESKFADMKNIG-GRGAGSIVAAQFLEKFVQ-DASWAHIDIAGVATGGYPKEINQSWASGFGVR 482 (494) Q Consensus 405 ge~~w~lPl~~~y~~~~~s~~AD~~n~~-~~~~g~~~aa~fl~~f~~-~~~w~HlDiag~a~~~~~~~~~~~g~tg~~vr 482 (494) ||++||||+|++|+++|||++|||+|++ +|.+|+|+||+||++||+ ++||+|||||||+|.+ ++|.|+|+|||||| T Consensus 237 gE~~WrlPl~~~~~~~lks~~ADl~N~~~~~~~g~~~Aa~FL~~Fv~~~~~W~HlDIAgta~~~--~~~~~~gaTG~gvr 314 (325) T 3ij3_A 237 DDPLWRLPLFQPYRNYLKSEVADLTNSSQNRMAGAITAALFLQHFVSDQIPWAHFDIFAWNLED--LPGRPIGGEAMALR 314 (325) T ss_dssp TCCCEECCCCGGGGGGGCCSSSSEESSCSSSSCHHHHHHHHHHTTSCTTSCEEEEEECCEESSC--BTTBCSEECCCSHH T ss_pred CCCEECCCCCHHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--CCCCCCCCHHHHHH T ss_conf 9977658898888976799631012799999961279999998625899784899755667999--99998997517999 Q ss_pred HHHHHHHHHCC Q ss_conf 99999997668 Q gi|254780392|r 483 LLDEFVRAFYE 493 (494) Q Consensus 483 ~l~~~~~~~~~ 493 (494) ||++|++++.+ T Consensus 315 tL~~~l~~~~k 325 (325) T 3ij3_A 315 AVFHYLEQQYR 325 (325) T ss_dssp HHHHHHHHHHC T ss_pred HHHHHHHHHCC T ss_conf 99999998619 No 4 >>2hc9_A Leucine aminopeptidase 1; zinc, carbonate, structural genomics, PSI, protein structure initiative; 1.85A {Caenorhabditis elegans} PDB: 2hb6_A (A:155-491) Probab=100.00 E-value=0 Score=946.85 Aligned_cols=322 Identities=31% Similarity=0.529 Sum_probs=310.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHH-HCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEE Q ss_conf 9999999999999998642021254030299999999986-113321000011100013458988742025778506886 Q gi|254780392|r 165 SQVVADIQSVVKGVNLARDIINEPANVLGTDEFCKQVRKL-ESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVM 243 (494) Q Consensus 165 ~~~i~~~~aiaegv~lARDLvN~PaN~ltP~~lA~~a~~l-~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l 243 (494) ++.+++++++++|+++||||+|+|||+|||+.||++++++ +++|++|+|+++++|+++|||+|++|||||.+|||||+| T Consensus 3 e~~~~~~~~~~~~~~~aR~L~n~P~n~ltP~~~a~~a~~~~~~~gv~v~v~~~~~l~~~gmg~~~aVg~gS~~~P~li~l 82 (337) T 2hc9_A 3 NEDAVFLTDLSESVRETARLIDTPANILTTDALVDEAVKVGNATGSKITVIRGEELLKAGFGGIYHVGKAGPTPPAFVVL 82 (337) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHTTCEEEEEETHHHHHHTCHHHHHHHTTSSSCCEEEEE T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHCCCCCEEEEECCCCCCCEEEEE T ss_conf 88999999999999999998758853209999999999977554998999829999972999766652046899879999 Q ss_pred ECCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCC Q ss_conf 20578865651266302112006631003333200232211235689999999987087872899864102668999747 Q gi|254780392|r 244 KWEGGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSSAQR 323 (494) Q Consensus 244 ~Y~g~~~~~~piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN~~~~~a~~ 323 (494) +|+|.++ ++||+|||||||||||||||||+.+|++||+||||||+|+|+|+++++|++|+||++++|+||||||++||| T Consensus 83 ~Y~g~~~-~~~i~lVGKGitfDsGGl~lK~~~~M~~Mk~DM~GAAaVlg~~~aia~l~~~~nV~~il~l~EN~i~~~A~~ 161 (337) T 2hc9_A 83 SHEVPGS-TEHIALVGKGVVYDTGGLQIKTKTGMPNMKRDMGGAAGMLEAYSALVKHGFSQTLHACLCIVENNVSPIANK 161 (337) T ss_dssp EECCTTC-SCEEEEEEEEEEEECCTTSCCCTTTSTTGGGGGHHHHHHHHHHHHHHTTTCCSEEEEEEEEEEECCSTTSCC T ss_pred EECCCCC-CCCEEEEECCEEECCCEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCC T ss_conf 9778998-875699823368424413467567788876404551589999999987378871799987420467788753 Q ss_pred HHHHHCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH Q ss_conf 07763024895888634786640365236788752079613552111200235431776057870898999999998998 Q gi|254780392|r 324 PGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLS 403 (494) Q Consensus 324 pgdvi~~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ATLTGa~~~alG~~~~g~~~n~~~~~~~~~~a~~~ 403 (494) ||||||++|||||||.||||||||||||+|+||+++|+|+.|||+|||||||++|||++++|+|||||++++++++||+. T Consensus 162 pgDVits~nGkTVEV~NTDAEGRLvLADal~ya~~~~~p~~iID~ATLTGa~~~ALG~~~ag~~sn~d~l~~~l~~a~~~ 241 (337) T 2hc9_A 162 PDDIIKMLSGKTVEINNTDAEGRLILADGVFYAKETLKATTIFDMATLTGAQAWLSGRLHGAAMTNDEQLENEIIKAGKA 241 (337) T ss_dssp TTCEEECTTSCEEECSCTTCCHHHHHHHHHHHHHHTTCCSEEEEEECCCTTHHHHHTTTSEEEEESCHHHHHHHHHHHHH T ss_pred CCCEEEECCCCCEEEECCCCCCCEEEEHHHHHHHHCCCCCHHHCCCCCCHHHEEECCCCCEEEEECHHHHHHHHHHHHHH T ss_conf 47557814897202205676441555227888652158500003144553210756885556671789999999999997 Q ss_pred HCCCCCCCCCCHH-HHHHHCCCCCCEECCC---CCCHHHHHHHHHHHHHC---CCCCEEEEEEEECCCCCCCCCCCCCCC Q ss_conf 5697176776867-8886179864170188---87467999999998723---886769994000011678888889986 Q gi|254780392|r 404 TGELLWRMPMNEE-YNKLIESKFADMKNIG---GRGAGSIVAAQFLEKFV---QDASWAHIDIAGVATGGYPKEINQSWA 476 (494) Q Consensus 404 ~ge~~w~lPl~~~-y~~~~~s~~AD~~n~~---~~~~g~~~aa~fl~~f~---~~~~w~HlDiag~a~~~~~~~~~~~g~ 476 (494) +||++||||||++ |+++++|++|||+|++ ++.+++|+||+||+||| +++||+|||||||+| .++|+ T Consensus 242 ~gE~~W~lPl~~~~~~~~~~S~~ADl~N~~~~~~~~~~s~~Aa~FL~~Fv~~~~~~~W~HlDIAG~a~-------~~kga 314 (337) T 2hc9_A 242 SGDLVAPMLFAPDLFFGDLKSSIADMKNSNLGKMDGPPSAVAGLLIGAHIGFGEGLRWLHLDIAAPAE-------VGDRG 314 (337) T ss_dssp HSCCEEECCCCHHHHGGGGCCSSSSEESCCSSCCSSCHHHHHHHHHHTTTGGGTTSEEEEEECTTTTE-------ETTEE T ss_pred HCCCEECCCCCHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC-------CCCCC T ss_conf 17821048899367887569825533266899988378999999999745889999869998021257-------99796 Q ss_pred CCCCHHHHHHHHHHHCCC Q ss_conf 543589999999976689 Q gi|254780392|r 477 SGFGVRLLDEFVRAFYEK 494 (494) Q Consensus 477 tg~~vr~l~~~~~~~~~~ 494 (494) ||||||||++|++++.++ T Consensus 315 TG~gvrtL~~~l~~~~~~ 332 (337) T 2hc9_A 315 TGYGPALFSTLLGKYTSV 332 (337) T ss_dssp CCCSHHHHHHHHGGGSSC T ss_pred CCCCHHHHHHHHHHCCCC T ss_conf 367499999999853888 No 5 >>3kzw_A Cytosol aminopeptidase; cytoplasm, hydrolase, manganese, metal-binding, protease, structural genomics; 2.70A {Staphylococcus aureus subsp} (A:213-515) Probab=100.00 E-value=0 Score=918.14 Aligned_cols=300 Identities=34% Similarity=0.599 Sum_probs=294.7 Q ss_pred EECHHHHHHHHHHH-HCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEECCEEECCCCC Q ss_conf 30299999999986-11332100001110001345898874202577850688620578865651266302112006631 Q gi|254780392|r 191 VLGTDEFCKQVRKL-ESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQPLAFIGKGVVFDTGGI 269 (494) Q Consensus 191 ~ltP~~lA~~a~~l-~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~~piaLVGKGvTFDtGGi 269 (494) +|||++|+++++++ ++++++|+|+++++|+++|||+|++|||||.+|||||+|+|+|.+++++||+||||||||||||| T Consensus 1 iltP~~~a~~a~~~~~~~~i~v~V~~~~~l~~~gmg~~laVg~gS~~pP~li~l~Y~g~~~~~~~i~lVGKGiTFDsGG~ 80 (303) T 3kzw_A 1 VLTPQTFAEDIVNHFKNTKVKVDVKDYDTLVSEGFGLLQAVGKGSKHKPRLVTITYNGKDKDEAPIALVGKGITYDSGGY 80 (303) T ss_dssp TSCHHHHHHHHHHHSTTSSCEEEEECHHHHHHTTCHHHHHHHTTSSSCCEEEEEEEESSCSSCCCEEEEEEEEEEECCTT T ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCEEEEECCEEEEECCCC T ss_conf 15999999999998365762999767999988699706065047788873368832688777760798546378741753 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCEEEE Q ss_conf 00333320023221123568999999998708787289986410266899974707763024895888634786640365 Q gi|254780392|r 270 SIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLIL 349 (494) Q Consensus 270 slKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN~~~~~a~~pgdvi~~~~G~tvei~nTDAEGRlvL 349 (494) ||||+.+|++||+||||||+|+|+|+++++|++|+||++++|+||||||++|||||||||+||||||||.|||||||||| T Consensus 81 slKp~~~M~~Mk~DM~GAAaVlga~~a~a~l~l~vnv~~il~l~EN~i~g~a~rPgDVi~s~~GkTvEV~NTDAEGRLVL 160 (303) T 3kzw_A 81 SIKTKNGMATMKFDMCGAANVVGIIEAASRLQLPVNIVGVLACAENMINEASMKPDDVFTALSGETVEVMNTDAEGRLVL 160 (303) T ss_dssp SCCCHHHHTTGGGGGHHHHHHHHHHHHHHHTTCSCEEEEEEEEEEECCCTTCCCTTCEEECTTSCEEECSCTTCCHHHHH T ss_pred CCCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEHHHHCCCCCCCCCCCEEECCCCCEEEEECCCCHHHHHH T ss_conf 34685424441135255799999999999728876548999712207898888899867817998899853770566633 Q ss_pred EHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEE-ECCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHC-CCCCC Q ss_conf 23678875207961355211120023543177605787-08989999999989985697176776867888617-98641 Q gi|254780392|r 350 ADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLF-ANNDVLAEQLLSSGLSTGELLWRMPMNEEYNKLIE-SKFAD 427 (494) Q Consensus 350 aD~l~ya~~~~~p~~iid~ATLTGa~~~alG~~~~g~~-~n~~~~~~~~~~a~~~~ge~~w~lPl~~~y~~~~~-s~~AD 427 (494) ||+|+|| ++++|+.|||+|||||||++|||++++|+| ||||+|++++++||+.+||++||||||++|+++++ |++|| T Consensus 161 ADaL~~a-~~~~p~~iIDiATLTGa~~~ALG~~~agv~~sNd~~l~~~l~~Ag~~~gE~~WrlPl~~~y~~~l~~S~iAD 239 (303) T 3kzw_A 161 ADAVFYA-NQYQPSVIMDFATLTGAAIVALGDDKAAAFESNSKVILNDILQISSEVDEMVFELPITATERASIKHSDIAD 239 (303) T ss_dssp HHHHHHH-HTTCCSEEEEEECCCHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCEEECCCCHHHHHHTTCCSSSS T ss_pred HHHHHHH-HCCCCCEEEECHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHCCCCCCHH T ss_conf 7788764-035998887015333132263378743453478699999999999986896788889976886360698010 Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 7018887467999999998723886769994000011678888889986543589999999976 Q gi|254780392|r 428 MKNIGGRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPKEINQSWASGFGVRLLDEFVRAF 491 (494) Q Consensus 428 ~~n~~~~~~g~~~aa~fl~~f~~~~~w~HlDiag~a~~~~~~~~~~~g~tg~~vr~l~~~~~~~ 491 (494) |+|+++|.+|+|+||+||++||+++||+|||||||+|.++++++.|+|+||||||||+||++++ T Consensus 240 l~N~~~~~~ga~~Aa~FL~~Fv~~~~W~HlDiAG~a~~~~~~~~~~~gaTG~gvr~L~~~l~~~ 303 (303) T 3kzw_A 240 LVNHTNGQGKALFAASFVTHFSGQTPHIHFDIAGPATTNKASYNGPKGPTGFMIPTIVQWLKQQ 303 (303) T ss_dssp EESCCSSSCHHHHHHHHHHGGGTTSCEEEEECTTTTEESSCBTTBSSEECCTTHHHHHHHHTTC T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCC T ss_conf 4799999678899999999748998989997676676788877999981454699999999609 No 6 >>1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase (alpha-aminoacylpeptide); 1.60A {Bos taurus} (A:177-484) Probab=100.00 E-value=0 Score=890.37 Aligned_cols=302 Identities=42% Similarity=0.696 Sum_probs=290.1 Q ss_pred EECHHHHHHHHHHH-HCCC--CCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCC-CCCCEEEEECCEEECC Q ss_conf 30299999999986-1133--210000111000134589887420257785068862057886-5651266302112006 Q gi|254780392|r 191 VLGTDEFCKQVRKL-ESLG--VAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDS-EEQPLAFIGKGVVFDT 266 (494) Q Consensus 191 ~ltP~~lA~~a~~l-~~~g--l~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~-~~~piaLVGKGvTFDt 266 (494) +|||++||++++++ ++++ ++|+|+|+++|+++|||+|++|||||.+|||||+|+|+|.++ .++||+|||||||||| T Consensus 1 ~ltP~~~a~~~~~l~~~~g~~v~v~i~~~~~l~~~g~g~~~aVg~GS~~~P~li~l~Y~g~~~~~~~~i~LVGKGitfDt 80 (308) T 1lam_A 1 EMTPTKFAEIVEENLKSASIKTDVFIRPKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKGSPNASEPPLVFVGKGITFDS 80 (308) T ss_dssp TSCHHHHHHHHHHHHHHHCSSEEEEEECHHHHHHTTCHHHHHHHTTSSSCCEEEEEEEECSSSTTSCCEEEEECEEEEEC T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCEEEECCCEEEEC T ss_conf 22989999999999875287156504669999845997057761267789724688504765556787799636226505 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCE Q ss_conf 63100333320023221123568999999998708787289986410266899974707763024895888634786640 Q gi|254780392|r 267 GGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGR 346 (494) Q Consensus 267 GGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN~~~~~a~~pgdvi~~~~G~tvei~nTDAEGR 346 (494) |||||||+.+|++||+||||||+|+|+|+++++|++|+||++++|+||||||++|||||||||+||||||||.||||||| T Consensus 81 GG~~lK~~~~M~~Mk~DM~GAAaV~g~~~a~a~l~l~vnv~ail~l~EN~i~~~A~~PgDVi~s~nGkTVEI~nTDAEGR 160 (308) T 1lam_A 81 GGISIKAAANMDLMRADMGGAATICSAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGR 160 (308) T ss_dssp CTTSCCCSTTGGGGGGTTHHHHHHHHHHHHHHHTTCSSEEEEEEEEEEECCSTTSCCTTEEEECTTSCEEEESCTTCCHH T ss_pred CCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCEEECCCCCEEEEECCCCCCE T ss_conf 88676887674442201312589999999999836997669999735236788888899778846995423323786533 Q ss_pred EEEEHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCHHHHH-HHCCCC Q ss_conf 3652367887520796135521112002354317760578708989999999989985697176776867888-617986 Q gi|254780392|r 347 LILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLSTGELLWRMPMNEEYNK-LIESKF 425 (494) Q Consensus 347 lvLaD~l~ya~~~~~p~~iid~ATLTGa~~~alG~~~~g~~~n~~~~~~~~~~a~~~~ge~~w~lPl~~~y~~-~~~s~~ 425 (494) |||||+|+|| ++++|+.|||+|||||||++|||+.++|+|+|||++++++++||+.+||++||||+|++|.+ .++|++ T Consensus 161 LvLADaL~yA-~~~~p~~iiDiATLTGa~~~ALG~~~ag~~sn~~~l~~~~~~a~~~~gE~~W~lPl~~~y~~~~~~S~~ 239 (308) T 1lam_A 161 LILADALCYA-HTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHYTRQVIDCQL 239 (308) T ss_dssp HHHHHHHHHH-HTTCCSEEEEEECCCHHHHHHHTTSCEEEEESCHHHHHHHHHHHHHHSCCEEECCCCHHHHHHHHCCSS T ss_pred EEEHHHHHHH-HHCCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHCCCCH T ss_conf 6750277886-503985144212130103162688632220388999999999999818975458896667676539960 Q ss_pred CCEECCC-CCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC Q ss_conf 4170188-8746799999999872388676999400001167888888998654358999999997668 Q gi|254780392|r 426 ADMKNIG-GRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPKEINQSWASGFGVRLLDEFVRAFYE 493 (494) Q Consensus 426 AD~~n~~-~~~~g~~~aa~fl~~f~~~~~w~HlDiag~a~~~~~~~~~~~g~tg~~vr~l~~~~~~~~~ 493 (494) |||+|++ +|.+|+|+||+||++||+++||+|||||||+|++++++|.++|+||||||||+||++++.+ T Consensus 240 ADi~N~~~~~~ag~~~AA~FL~~Fv~~~~W~HlDIAg~a~~~~~~~~~~~g~TG~~vr~l~~~l~~~~k 308 (308) T 1lam_A 240 ADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPYLRKGMAGRPTRTLIEFLFRFSQ 308 (308) T ss_dssp SSEESSCSSSTTHHHHHHHHHHTTCCCSSEEEEECGGGSEESSSSTTSCSEECCTTHHHHHHHHHHHHC T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHCC T ss_conf 310279968982656999999975899797999777336268987689998060219999999998619 No 7 >>3kzw_A Cytosol aminopeptidase; cytoplasm, hydrolase, manganese, metal-binding, protease, structural genomics; 2.70A {Staphylococcus aureus subsp} (A:1-212) Probab=99.94 E-value=7.7e-26 Score=201.89 Aligned_cols=182 Identities=18% Similarity=0.223 Sum_probs=152.0 Q ss_pred EEEEEEECCCCCCCCEEEEEECCCCCCC--CCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCH Q ss_conf 0699950778776771699962686632--22212388889999998089983678789984378887445999944881 Q gi|254780392|r 2 DIKFSFAKNPSIKQEGLAILLKTSFSDV--AGLSLIGSPSIVMRAVSVKNFIGESKSHLNILAPVDCVWDRLVVAGIGDP 79 (494) Q Consensus 2 ~mkis~~~~~~~~~d~lvV~~~~~~~~~--~~~~~~~~~~~L~~~i~~~~F~GK~Ge~l~l~~~~g~~~~rViLVGLG~~ 79 (494) .|+|++++....+.++++|++....... ....+....+.+.++++..+|+||.|+++.++.+.+...+||++||||++ T Consensus 24 ~m~~~~~~~~~~~~~~lvi~v~~~~~~~~~~~~l~~~~~~~i~~~l~~~~f~gk~ge~~~l~~~~~~~~~~i~lvGlG~~ 103 (212) T 3kzw_A 24 AMNFKLNNTLSNEINTLIIGIPEHLNQLERISFNHIDITESLERLKHQHIIGSKVGKIYTTAFDVQDQTYRLITVGLGNL 103 (212) T ss_dssp SEEEEESCCCCTTCCEEEEEEESCGGGSCCCEETTEECHHHHHHHHHTTSSCCSBTCEEEEEEEETTEEEEEEEEEEECS T ss_pred CCEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEEECCCH T ss_conf 20012102345578769996757765320033425668988999876250257646524320347887655999946861 Q ss_pred HHCCHH-HHHHHHHHHHHHHHCCCEEEEECCCCCCC----CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 558999-99999999998531697489941778999----9899999999997147775444436433323210001333 Q gi|254780392|r 80 RDANFS-WLKAGGSIASYIEEDKNIEIFVDVPEYPI----TKAEIRDLVLGFMLKTYTFDQYKTKKRESSSPRSKENISV 154 (494) Q Consensus 80 ~~~~~~-~~ra~a~~~~~l~~~~~~~v~i~l~~~~~----~~~~~~~~~eG~~L~~Y~Fd~yKskk~~~~~~~~~~~~~i 154 (494) ++++.+ ++++++.+++.+++.+.+++.+.++.... ..+.++++++|+.|++|+|++||+++++...+... + T Consensus 104 ~~~~~~~~r~a~~~~~~~l~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~l~~Y~f~~yKs~~~~~~~~~~~----l 179 (212) T 3kzw_A 104 KTRSYQDMLKIWGHLFQYIKSEHIEDTYLLMDSFISKYDQLSDVLMACGIQSERATYEFDHYKSSKKAPFKTNLN----L 179 (212) T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCCEEEEEGGGTCCSSSCHHHHHHHHHHHHHHTTCCCCTTCTTCCCCCCEEEE----E T ss_pred HHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE----E T ss_conf 657999999999999998632576189998873346642599999999999984774357566799876675489----9 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE Q ss_conf 224577378999999999999999986420212540 Q gi|254780392|r 155 TIVTEMIQQSSQVVADIQSVVKGVNLARDIINEPAN 190 (494) Q Consensus 155 ~~~~~~~~~~~~~i~~~~aiaegv~lARDLvN~PaN 190 (494) .......++.+++++++++||++||||+|+||| T Consensus 180 ---~~~~~~~~~~~~~~~aia~gv~laRdLvN~PaN 212 (212) T 3kzw_A 180 ---ISESLIELDFIHEGISIGQSINLARDFSNMPPN 212 (212) T ss_dssp ---ECSSCCCCHHHHHHHHHHHHHHHHHHHHHSCTT T ss_pred ---ECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf ---358667699999999999999999986378760 No 8 >>1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase (alpha-aminoacylpeptide); 1.60A {Bos taurus} (A:1-176) Probab=99.83 E-value=9e-22 Score=173.20 Aligned_cols=164 Identities=14% Similarity=0.088 Sum_probs=119.7 Q ss_pred CCEEEEEECCCCCCCCCC--------CCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCHHHCCHH- Q ss_conf 771699962686632222--------12388889999998089983678789984378887445999944881558999- Q gi|254780392|r 15 QEGLAILLKTSFSDVAGL--------SLIGSPSIVMRAVSVKNFIGESKSHLNILAPVDCVWDRLVVAGIGDPRDANFS- 85 (494) Q Consensus 15 ~d~lvV~~~~~~~~~~~~--------~~~~~~~~L~~~i~~~~F~GK~Ge~l~l~~~~g~~~~rViLVGLG~~~~~~~~- 85 (494) +|+|+|++..+....... .+....+.++++++..+|+||.|+++.+|.+ +...+||++||||+.++.+.+ T Consensus 1 ~d~Lvv~v~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~f~gk~ge~~~l~~~-~~~~~~v~lvGlG~~~~~~~~~ 79 (176) T 1lam_A 1 TKGLVLGIYSKEKEEDEPQFTSAGENFNKLVSGKLREILNISGPPLKAGKTRTFYGL-HEDFPSVVVVGLGKKTAGIDEQ 79 (176) T ss_dssp CEEEEEEECCCCTTCSSCCBCHHHHHHHHHTTTHHHHHHHHTCSCCCTTCEEEEEEE-ETTEEEEEEEECCCTTCCEETT T ss_pred CCEEEEEEECCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHCCCCCCCCCCEEEEECC-CCCCCEEEEEECCCCCCCCCHH T ss_conf 943999996367777666659899999998254999999727999887877997379-9987889999688753357878 Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCC---CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH Q ss_conf 999999999985316974899417789---99989999999999714777544443643332321000133322457737 Q gi|254780392|r 86 WLKAGGSIASYIEEDKNIEIFVDVPEY---PITKAEIRDLVLGFMLKTYTFDQYKTKKRESSSPRSKENISVTIVTEMIQ 162 (494) Q Consensus 86 ~~ra~a~~~~~l~~~~~~~v~i~l~~~---~~~~~~~~~~~eG~~L~~Y~Fd~yKskk~~~~~~~~~~~~~i~~~~~~~~ 162 (494) ++++++.+.+.++..+.....+..+.. ....+.++.+++|+.++.|+|++||+++++..... + ... T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~Y~f~~~ks~~~~~~~~~--------~---~~~ 148 (176) T 1lam_A 80 ENWHEGKENIRAAVAAGCRQIQDLEIPSVEVDPCGDAQAAAEGAVLGLYEYDDLKQKRKVVVSAK--------L---HGS 148 (176) T ss_dssp TTEEHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTCHHHHHHHHHHHHCCCCTTCSSCCCCCEEE--------E---SSS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE--------C---CCC T ss_conf 99999999999999999998742677512239479999999999967710464456666410132--------2---571 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCE Q ss_conf 8999999999999999986420212540 Q gi|254780392|r 163 QSSQVVADIQSVVKGVNLARDIINEPAN 190 (494) Q Consensus 163 ~~~~~i~~~~aiaegv~lARDLvN~PaN 190 (494) ..+..+++++++++||++||||+|+||| T Consensus 149 ~~~~~~~~~~aia~gv~laRdLvN~P~N 176 (176) T 1lam_A 149 EDQEAWQRGVLFASGQNLARRLMETPAN 176 (176) T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHSCTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 6799999999999999999986447961 No 9 >>1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A {Escherichia coli} (A:1-164) Probab=99.79 E-value=3.5e-18 Score=147.86 Aligned_cols=147 Identities=14% Similarity=0.146 Sum_probs=122.8 Q ss_pred CEEEEEEECCCCCCCCEEEEEECCCCCCCC--CCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEECCC Q ss_conf 906999507787767716999626866322--221238888999999808998367878998437888744599994488 Q gi|254780392|r 1 MDIKFSFAKNPSIKQEGLAILLKTSFSDVA--GLSLIGSPSIVMRAVSVKNFIGESKSHLNILAPVDCVWDRLVVAGIGD 78 (494) Q Consensus 1 M~mkis~~~~~~~~~d~lvV~~~~~~~~~~--~~~~~~~~~~L~~~i~~~~F~GK~Ge~l~l~~~~g~~~~rViLVGLG~ 78 (494) |++++++......+.|+++|++.++..... ...+....+.|.++++..+|+||.|+++.++.+.+...+||++||||+ T Consensus 1 Mki~~~~~~~~~~~~d~lvv~v~~~~~~~~~~~~ld~~~~~~l~~~~~~~~f~gk~g~~~~l~~~~~~~~~rvllvGlG~ 80 (164) T 1gyt_A 1 MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGK 80 (164) T ss_dssp CEEEEECCCGGGCCSSCEEEEEETTTEECHHHHHHHTTSSSHHHHHHHHTSCCCCTTCEEEEESCTTCSSSEEEEEECCS T ss_pred CEEEEECCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCEEEEEECCC T ss_conf 96899659965367887999984798767889987698778999999748998888988998189987678899996086 Q ss_pred HHHCCHH-HHHHHHHHHHHHHHCCCEEEEECCCCCCC----CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 1558999-99999999998531697489941778999----989999999999714777544443643332321 Q gi|254780392|r 79 PRDANFS-WLKAGGSIASYIEEDKNIEIFVDVPEYPI----TKAEIRDLVLGFMLKTYTFDQYKTKKRESSSPR 147 (494) Q Consensus 79 ~~~~~~~-~~ra~a~~~~~l~~~~~~~v~i~l~~~~~----~~~~~~~~~eG~~L~~Y~Fd~yKskk~~~~~~~ 147 (494) .++++.+ ++++++++++.+++.+.+++.+.++.+.. ..+.++++++|+.|++|+||+|||+++++..+. T Consensus 81 ~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~g~~l~~Y~fd~yKt~~~~~~~~l 154 (164) T 1gyt_A 81 ERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPL 154 (164) T ss_dssp TTCCCHHHHHHHHHHHHHHHHHSCCSEEEECGGGSCBTTBCHHHHHHHHHHHHHHHHCCCCTTCSSCCCCCCCC T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC T ss_conf 34399999999999999998634554200001334436778799999999998853701010002333444441 No 10 >>3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family, IDP01962, cytoplasm, hydrolase, manganese, metal-binding, protease, structural genomics; HET: PGE PG4; 1.80A {Coxiella burnetii} (A:1-157) Probab=99.48 E-value=3.8e-14 Score=119.36 Aligned_cols=122 Identities=15% Similarity=0.062 Sum_probs=91.5 Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCHHHCCHHHHHHH Q ss_conf 87767716999626866322221238888999999808998367878998437888744599994488155899999999 Q gi|254780392|r 11 PSIKQEGLAILLKTSFSDVAGLSLIGSPSIVMRAVSVKNFIGESKSHLNILAPVDCVWDRLVVAGIGDPRDANFSWLKAG 90 (494) Q Consensus 11 ~~~~~d~lvV~~~~~~~~~~~~~~~~~~~~L~~~i~~~~F~GK~Ge~l~l~~~~g~~~~rViLVGLG~~~~~~~~~~ra~ 90 (494) .....++++|++....... ..+....+.+.++++..+|+||.||++.++.+.+ ..|+++||||+.++.. ++ T Consensus 31 ~~~~~~~~~v~~~~~~~~~--~l~~~~~~~i~~~l~~~~F~GK~g~~~~l~~~~g--~~rv~lvGlG~~~~~~-----a~ 101 (157) T 3ij3_A 31 TEKKKNFIPIQPMMPDELP--DWLDTQDARTQQWVKASGFVGLAGTICSIPESTG--ALQRVLLGVSDYEYSW-----DF 101 (157) T ss_dssp CSCCTTCEEEEEECGGGHH--HHHTTSCHHHHHHHHHHTCCCCTTCEEEEECTTS--SEEEEEEECSSTTCCG-----GG T ss_pred HCCCCCCCCEEEECHHHHH--HHHHCCCHHHHHHHHHCCCCCCCCCEEEEECCCC--CEEEEEEECCCCCCHH-----HH T ss_conf 4035776745995673688--9985499999999996799778887899887999--7789999838850147-----89 Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC Q ss_conf 9999985316974899417789999899999999997147775444436433323 Q gi|254780392|r 91 GSIASYIEEDKNIEIFVDVPEYPITKAEIRDLVLGFMLKTYTFDQYKTKKRESSS 145 (494) Q Consensus 91 a~~~~~l~~~~~~~v~i~l~~~~~~~~~~~~~~eG~~L~~Y~Fd~yKskk~~~~~ 145 (494) +++++.++..+...+.+. ....+.++++++|+.|++|+||+|||+++++.. T Consensus 102 ~~~a~~l~~~~~~~~~~~----~~~~~~~~~~aeG~~L~~YrFd~yKs~~~~~~~ 152 (157) T 3ij3_A 102 GGLSKVLPPGAFQLNRDD----FEDDEYYERALLAFGLGSYQFNAYRKRSPYLAK 152 (157) T ss_dssp GGHHHHCCSEEEECCGGG----SSSHHHHHHHHHHHHHTTCCCCSSSCCCCCSEE T ss_pred HHHHHHCCCCEEEECCCC----CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCE T ss_conf 999973765658824577----787689999999998615404746689987660 No 11 >>3kr4_A M17 leucyl aminopeptidase; protease, hydrolase; HET: BES 1PE; 2.00A {Plasmodium falciparum} PDB: 3kqz_A* 3kqx_A* 3kr5_A* (A:1-193) Probab=97.72 E-value=0.0044 Score=41.33 Aligned_cols=138 Identities=14% Similarity=0.082 Sum_probs=96.6 Q ss_pred EEEECCCCCCCCEEEEEECCCCC-CCCCCC--CCCCHHHHHHHHHC---CCCCCCCCCEEEEEC-CCCCCCCEEEEEECC Q ss_conf 99507787767716999626866-322221--23888899999980---899836787899843-788874459999448 Q gi|254780392|r 5 FSFAKNPSIKQEGLAILLKTSFS-DVAGLS--LIGSPSIVMRAVSV---KNFIGESKSHLNILA-PVDCVWDRLVVAGIG 77 (494) Q Consensus 5 is~~~~~~~~~d~lvV~~~~~~~-~~~~~~--~~~~~~~L~~~i~~---~~F~GK~Ge~l~l~~-~~g~~~~rViLVGLG 77 (494) +.-.+..-.-.+.|+||+..+.+ +..... .......|...++. ..|.||.|..-.+|- ....+...+-+|||| T Consensus 31 vkD~ke~C~~ddgl~iFLvns~~K~ng~~KIsS~ikD~~inEFL~~~N~d~FngKlGTsksFYi~Nek~kyv~l~~i~CG 110 (193) T 3kr4_A 31 VYDIKGGCNVEEGLTIFLVNNPGKENGPVKISSKVNDKQVSEFLKDENMEKFNVKLGTSKHFYMFNDNKNSVAVGYVGCG 110 (193) T ss_dssp EEEGGGCBCCCSSEEEEEECCSSSTTCBCCCCSCBSCHHHHHHTSHHHHTTSBCCTTCEEEEEEECTTSCEEEEEEEECC T ss_pred EEECCCCCCCCCCEEEEEECCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEEEEECC T ss_conf 98566675467765999954787446661032204725689999973442056545886999843876562389999289 Q ss_pred CHHHCCH-HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC Q ss_conf 8155899-99999999999853169748994177899998999999999971477754444364333 Q gi|254780392|r 78 DPRDANF-SWLKAGGSIASYIEEDKNIEIFVDVPEYPITKAEIRDLVLGFMLKTYTFDQYKTKKRES 143 (494) Q Consensus 78 ~~~~~~~-~~~ra~a~~~~~l~~~~~~~v~i~l~~~~~~~~~~~~~~eG~~L~~Y~Fd~yKskk~~~ 143 (494) ..++.+. +.|+..-+++..|...+.+++++.+ +........+-+.|-+..-.-.-.+|||..+.. T Consensus 111 ~v~e~tE~eirki~~sLv~~LHdnK~~~~siiF-Ei~i~e~LFRFfLEt~FYEyv~DERFKStdks~ 176 (193) T 3kr4_A 111 SVADLSEADMKRVVLSLVTMLHDNKLSKLTVVF-EINVDKNLFRFFLETLFYEYMTDERFKSTDKNV 176 (193) T ss_dssp SCSSCCHHHHHHHHHHHHHHHTTSCCSEEEEEE-CSCCCHHHHHHHHHHHHHHHCCCCTTCSTTCCC T ss_pred CHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 702289999999999999999867980899973-577755799999999997654224202577666 No 12 >>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2; 2.00A {Haemophilus influenzae rd KW20} PDB: 3ic1_A (A:1-177,A:299-377) Probab=92.47 E-value=0.33 Score=28.10 Aligned_cols=186 Identities=15% Similarity=0.049 Sum_probs=98.8 Q ss_pred HHHHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCC Q ss_conf 9999864202125403029999999998-611332100001110001345898874202577850688620578865651 Q gi|254780392|r 176 KGVNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQP 254 (494) Q Consensus 176 egv~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~~p 254 (494) +-+.+.|+|++.|.--......++..++ |++.|+++++.+... +..+-...+...|+.++..++.--. T Consensus 4 ~~i~~l~~lv~ips~s~~e~~~~~~i~~~l~~~G~~~~~~~~~~------~~~~~~~~~~~~~~i~l~~h~d~v~----- 72 (256) T 3isz_A 4 KVVSLAQDLIRRPSISPNDEGCQQIIAERLEKLGFQIEWMPFND------TLNLWAKHGTSEPVIAFAGHTDVVP----- 72 (256) T ss_dssp HHHHHHHHHHTSCCBTTCCTTHHHHHHHHHHHTTCEEEECCBTT------BCEEEEEEESSSCEEEEEEECCBCC----- T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECC------EEEEEEECCCCCCEEEEECCCCCCC----- T ss_conf 99999999947999798858999999999997799489998199------8899998689998799979888589----- Q ss_pred EEEEECCEEECCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHCCC--CCCEEEEEEECCCC--CCCCCCCHHHHHC Q ss_conf 2663021120066310033332002-32211235689999999987087--87289986410266--8999747077630 Q gi|254780392|r 255 LAFIGKGVVFDTGGISIKPSHGMEE-MKGDLGGAAAVTGLLHVLAERKA--KINAIGVLALVENM--PGSSAQRPGDIVR 329 (494) Q Consensus 255 iaLVGKGvTFDtGGislKp~~~M~~-Mk~DM~GaAav~g~~~aia~l~~--~v~v~~~~~~~EN~--~~~~a~~pgdvi~ 329 (494) .-.+...+||.-....+...-.-. .--|.+|.|+++.+++++.+.+. +.+|+.+.-..|-. .++..+ T Consensus 73 -~~~~~~~~~~~~~~~~~~~~~~g~G~~D~k~g~a~~l~a~~~l~~~~~~~~~~i~~~f~~~EE~G~~~g~~~------- 144 (256) T 3isz_A 73 -TGDENQWSSPPFSAEIIDGMLYGRGAADMKGSLAAMIVAAEEYVKANPNHKGTIALLITSDEEATAKDGTIH------- 144 (256) T ss_dssp -CCCGGGCSSCTTSCCEETTEEESTTTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSSCCSSSHHH------- T ss_pred -CCCCCCCCCCCCCEEEECCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHH------- T ss_conf -887643432233315743753010244443321014677898776404777337750000112110477224------- Q ss_pred CCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH-HCCCC Q ss_conf 24895888634786640365236788752079613552111200235431776057870898999999998998-56971 Q gi|254780392|r 330 SMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLS-TGELL 408 (494) Q Consensus 330 ~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ATLTGa~~~alG~~~~g~~~n~~~~~~~~~~a~~~-~ge~~ 408 (494) +.+... ....+++.+|..-.-.+-. .....+..+.+.+.+.++.+. .|.+. T Consensus 145 -------------------~~~~~~--~~~~~~d~~i~~e~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~g~~~ 196 (256) T 3isz_A 145 -------------------VVETLM--ARDEKITYCMVGEPSSAKN-------LGDVVKNGGKLLDSITSAIEETIGITP 196 (256) T ss_dssp -------------------HHHHHH--HTTCCCCEEEECCCCBSSS-------TTSEEEEETHHHHHHHHHHHHHHSCCC T ss_pred -------------------HHHHHH--HCCCCCEEEEEECCCCCCC-------CCCEEEEECHHHHHHHHHHHHHHCCCC T ss_conf -------------------456665--2467734999947888655-------774477714599999999999878997 No 13 >>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M40, structural genomics; 2.04A {Bacillus cereus atcc 10987} (A:1-176,A:296-373) Probab=91.92 E-value=0.42 Score=27.32 Aligned_cols=180 Identities=17% Similarity=0.109 Sum_probs=108.1 Q ss_pred HHHHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCC Q ss_conf 9999864202125403029999999998-611332100001110001345898874202577850688620578865651 Q gi|254780392|r 176 KGVNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQP 254 (494) Q Consensus 176 egv~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~~p 254 (494) +-+.+.|+|++-|.---.-...++..++ |+..|++++.........-+-+.+++.=+|+..+... T Consensus 7 ~~i~~l~~lv~i~s~s~~e~~~a~~l~~~l~~~g~~~~~~~~~~~~~~~~~nv~a~~~g~~~~~~~-------------- 72 (254) T 3gb0_A 7 RLVNEFXELVQVDSETKFEAEICKVLTKKFTDLGVEVFEDDTXAVTGHGAGNLICTLPATKDGVDT-------------- 72 (254) T ss_dssp HHHHHHHHHHTSCCBTTCCHHHHHHHHHHHHHTTCEEEECSCHHHHCCSSCCEEEEECCSSTTCCC-------------- T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCE-------------- T ss_conf 999999999379998908999999999999977997999605433568874399998557899988-------------- Q ss_pred EEEEECCEEECCCCCCCC-----------CCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEECCCCCCCCCC Q ss_conf 266302112006631003-----------333200232211235689999999987087-87289986410266899974 Q gi|254780392|r 255 LAFIGKGVVFDTGGISIK-----------PSHGMEEMKGDLGGAAAVTGLLHVLAERKA-KINAIGVLALVENMPGSSAQ 322 (494) Q Consensus 255 iaLVGKGvTFDtGGislK-----------p~~~M~~Mk~DM~GaAav~g~~~aia~l~~-~v~v~~~~~~~EN~~~~~a~ 322 (494) +.+.+--.|...+.-..- .+.+=.+| .+|.|+.+.+++++.+... +.+|..+.-..|-.= T Consensus 73 il~~~h~D~v~~~~~~~~~~~~~~~~~~~~grG~~D~---kgg~a~~l~a~~~l~~~~~~~~~i~~~~~~dEE~G----- 144 (254) T 3gb0_A 73 IYFTSHXDTVVPGNGIKPSIKDGYIVSDGTTILGADD---KAGLASXFEAIRVLKEKNIPHGTIEFIITVGEESG----- 144 (254) T ss_dssp EEEEEECCBCSSCSSCCCEEETTEEECCSSSCCCHHH---HHHHHHHHHHHHHHHHTTCCCCCEEEEEESCGGGT----- T ss_pred EEEECCCCCCCCCCEEEEECCCCEEECCCCEEEECCC---CCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC----- T ss_conf 9984675525787503320123338626734653157---63111111110122236764552799875135456----- Q ss_pred CHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHH Q ss_conf 70776302489588863478664036523678875207961355211120023543177605787089899999999899 Q gi|254780392|r 323 RPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGL 402 (494) Q Consensus 323 ~pgdvi~~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ATLTGa~~~alG~~~~g~~~n~~~~~~~~~~a~~ 402 (494) +-.+..|.....+|+..|.+=.- +... .+...|.++.+.+.++.+ T Consensus 145 --------------------------~~G~~~~~~~~~~~d~~i~~d~~--------~~~~-~~~~~~~~~~~~~~~~~~ 189 (254) T 3gb0_A 145 --------------------------LVGAKALDRERITAKYGYALDSD--------GKVG-EIVVAGDHVVEVAKRAAE 189 (254) T ss_dssp --------------------------SHHHHHSCGGGCCCSEEEEEEEC--------SCTT-EEEEETCHHHHHHHHHHH T ss_pred --------------------------CCCHHHHHHHHCCCCCEEEEEEC--------CCCC-CCEEECHHHHHHHHHHHH T ss_conf --------------------------52058888652012311323203--------5423-321210489999999999 Q ss_pred HHCCCCCCCC Q ss_conf 8569717677 Q gi|254780392|r 403 STGELLWRMP 412 (494) Q Consensus 403 ~~ge~~w~lP 412 (494) ..|...=.++ T Consensus 190 ~~g~~~~~~~ 199 (254) T 3gb0_A 190 KIGRTPSLHQ 199 (254) T ss_dssp HTTCCCEEEE T ss_pred HHCCCCEEEE T ss_conf 8599975866 No 14 >>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural genomics, PSI-2; HET: BGC; 1.90A {Streptococcus pneumoniae TIGR4} (A:1-214,A:440-481) Probab=91.78 E-value=0.99 Score=24.72 Aligned_cols=120 Identities=13% Similarity=0.194 Sum_probs=75.7 Q ss_pred HHHHHHHHHHCCCCCEEECHH---HHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCC Q ss_conf 999998642021254030299---99999998-61133210000111000134589887420257785068862057886 Q gi|254780392|r 175 VKGVNLARDIINEPANVLGTD---EFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDS 250 (494) Q Consensus 175 aegv~lARDLvN~PaN~ltP~---~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~ 250 (494) .+-+.+.|+|++.|.---.+. ..++...+ |++.|+++++.+.. ...-++.++++.++ T Consensus 44 ~~~~~~l~~Lv~ips~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~-------------------~~~nvia~~~g~~~ 104 (256) T 2pok_A 44 QHYFEVLRTLISKKSVFAQQVGLKEVANYLGEIFKRVGAEVEIDESY-------------------TAPFVMAHFKSSRP 104 (256) T ss_dssp HHHHHHHHHHHHSCCCGGGCTTHHHHHHHHHHHHHHTTCEEEEECSS-------------------SSCEEEEEECCSST T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECC-------------------CCCEEEEEECCCCC T ss_conf 99999999996799979670259999999999999779979999659-------------------99889999568889 Q ss_pred CCCCEEEEECCEEECCC--------CCCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECC Q ss_conf 56512663021120066--------310033------3320023221123568999999998708--7872899864102 Q gi|254780392|r 251 EEQPLAFIGKGVVFDTG--------GISIKP------SHGMEEMKGDLGGAAAVTGLLHVLAERK--AKINAIGVLALVE 314 (494) Q Consensus 251 ~~~piaLVGKGvTFDtG--------GislKp------~~~M~~Mk~DM~GaAav~g~~~aia~l~--~~v~v~~~~~~~E 314 (494) +.++|+|.+--=|-+-+ -+.+.. +.|.. -|.+|.|+.+.+++++.+.+ ++.+|+.+....| T Consensus 105 ~~~~I~l~aH~Dtvp~~~~~~~~~~p~~~~~~~~~i~GrG~~---D~kggva~~l~a~~~L~~~~~~~~~~I~~i~~~~E 181 (256) T 2pok_A 105 DAKTLIFYNHYDTVPADGDQVWTEDPFTLSVRNGFMYGRGVD---DDKGHITARLSALRKYMQHHDDLPVNISFIMEGAE 181 (256) T ss_dssp TCCEEEEEEECCCCCSCSSCCCSSCTTSCEEETTEEESTTTT---TTHHHHHHHHHHHHHHHHTCSSCSSEEEEEEESCG T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCEEEECCCC---CCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCC T ss_conf 998899977707518999866658995489979999935512---13242389999999977522464431577521343 Q ss_pred CC Q ss_conf 66 Q gi|254780392|r 315 NM 316 (494) Q Consensus 315 N~ 316 (494) -. T Consensus 182 E~ 183 (256) T 2pok_A 182 ES 183 (256) T ss_dssp GG T ss_pred CC T ss_conf 33 No 15 >>1fno_A Peptidase T; metallo peptidase, protease, zinc, hydrolase; 2.40A {Salmonella typhimurium} (A:1-205,A:328-417) Probab=90.81 E-value=1.2 Score=24.07 Aligned_cols=192 Identities=10% Similarity=0.054 Sum_probs=110.9 Q ss_pred HHHHHHHCCCCCEEE--------CHHH--HHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECC Q ss_conf 998642021254030--------2999--9999998-6113321000011100013458988742025778506886205 Q gi|254780392|r 178 VNLARDIINEPANVL--------GTDE--FCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWE 246 (494) Q Consensus 178 v~lARDLvN~PaN~l--------tP~~--lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~ 246 (494) +.+.++|++.|+--- ++.+ .++..++ |++.|++++.++...-.. +.+.-..+...|.-++..++. T Consensus 5 ~~~l~~lv~i~S~s~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~v~~i~~~g~~~----~~~~~~~~~~~~~~~~~~H~D 80 (295) T 1fno_A 5 LERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEEXGLVNITLSEKGTLX----ATLPANVEGDIPAIGFISHVD 80 (295) T ss_dssp HHHHHHHHTSCCBCCSSCSSSSSSHHHHHHHHHHHHHHHHHTCEEEEECTTCCEE----EEECCSSCSCCCCEEEEEECC T ss_pred HHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCEEE----EEECCCCCCCCCEEEEECCCC T ss_conf 9999987630571698767898987899999999999996799389988996499----998145789998899989656 Q ss_pred CCC----CCCCCEEEEE---------------CCEEECCCCCCCCC----CCCCHHHHHHHHHH-HHHHHHHHHHHHCC- Q ss_conf 788----6565126630---------------21120066310033----33200232211235-68999999998708- Q gi|254780392|r 247 GGD----SEEQPLAFIG---------------KGVVFDTGGISIKP----SHGMEEMKGDLGGA-AAVTGLLHVLAERK- 301 (494) Q Consensus 247 g~~----~~~~piaLVG---------------KGvTFDtGGislKp----~~~M~~Mk~DM~Ga-Aav~g~~~aia~l~- 301 (494) ..+ ....+..+.+ -..++|.=..-++. +.+...|+.||.+. ++++-+++++.+.+ T Consensus 81 tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dp~~~~~~~~~~~grg~~~~~~D~~~giaa~l~a~~~l~~~~~ 160 (295) T 1fno_A 81 TSPDFSGKNVNPQIVENYRGGDIALGIGDEVLSPVXFPVLHQLLGQTLITTDGKTLLGADDKAGVAEIXTALAVLKGNPI 160 (295) T ss_dssp BCTTSCCSSCCCEEETTCCSSCEECSSSSCEECTTTCGGGGGCTTSCEEECCSSSCCCHHHHHHHHHHHHHHHHHHSSSC T ss_pred CCCCCCCCCCCCCEEECCCCCCEECCCCCCCCCHHHCCCCCCEECCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCC T ss_conf 28999987769735454568600035432310221166421212464898367302467647899999999999985799 Q ss_pred CCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCCHHHHHHCCC Q ss_conf 78728998641026689997470776302489588863478664036523678875207961355211120023543177 Q gi|254780392|r 302 AKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGN 381 (494) Q Consensus 302 ~~v~v~~~~~~~EN~~~~~a~~pgdvi~~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ATLTGa~~~alG~ 381 (494) ++.+|+.+.-..|---+.- +-.|+ ++++++.-+.+-+ T Consensus 161 ~~~~i~~~~~~~EE~G~~G-------------------------------a~~~~-~~~~~~~~~~id~----------- 197 (295) T 1fno_A 161 PHGDIKVAFTPDEEVGKGA-------------------------------KHFDV-EAFGAQWAYTVDG----------- 197 (295) T ss_dssp CCCCEEEEEESCGGGTCTT-------------------------------TTCCH-HHHCCSEEEECCC----------- T ss_pred CCCCEEEEEEEECCCCCHH-------------------------------HHHHH-HCCCCCEEEEEEC----------- T ss_conf 8886899987401147428-------------------------------88876-3569868999851----------- Q ss_pred CCEEEE-ECCHHHHHHHHHHHHHHCCCCCCCCCCHH Q ss_conf 605787-08989999999989985697176776867 Q gi|254780392|r 382 IYAGLF-ANNDVLAEQLLSSGLSTGELLWRMPMNEE 416 (494) Q Consensus 382 ~~~g~~-~n~~~~~~~~~~a~~~~ge~~w~lPl~~~ 416 (494) ..++-. ..+..+.+.+.++.+..|.+++.++..-. T Consensus 198 ~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~ 233 (295) T 1fno_A 198 GGVGELEFEHPHILDIAQQAXRDCHITPEXKPIRGG 233 (295) T ss_dssp CSTTBEECTSTHHHHHHHHHHHHTTCCCBCCCBSSC T ss_pred CCCCCCEECCHHHHHHHHHHHHHHCCCCEEEEEEEE T ss_conf 588751348989999999999983999389987748 No 16 >>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, substrate specificity, metallopeptidase M42, hydrolase; 2.70A {Streptococcus pneumoniae R6} (A:1-70,A:166-355) Probab=89.34 E-value=1.6 Score=23.26 Aligned_cols=109 Identities=11% Similarity=0.071 Sum_probs=64.8 Q ss_pred HHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEE Q ss_conf 99864202125403029999999998-61133210000111000134589887420257785068862057886565126 Q gi|254780392|r 178 VNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQPLA 256 (494) Q Consensus 178 v~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~~pia 256 (494) +.+.|+|.+.|.---.=..-++..++ |++.|+++++-. +|..+++=.|+ +++.++|+ T Consensus 6 ~~~~~~l~~~p~~s~~e~~~~~~~~~~l~~~g~~~~~~~--------~~~~~~~~~~~--------------~~~~~~i~ 63 (260) T 3kl9_A 6 FSKIKEVTELAAVSGHEAPVRAYLREKLTPHVDEVVTDG--------LGGIFGIKHSE--------------AVDAPRVL 63 (260) T ss_dssp HHHHHHHHTSCCBTTCCHHHHHHHHHHHGGGSSEEEECT--------TSCEEEEECCC--------------STTCCEEE T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEEC--------CCCEEEEECCC--------------CCCCCEEE T ss_conf 999999981999898879999999999997299899957--------86589997788--------------89998699 Q ss_pred EEECCEEECC-CCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC Q ss_conf 6302112006-6310033----332002322112356899999999870878728998641026 Q gi|254780392|r 257 FIGKGVVFDT-GGISIKP----SHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVEN 315 (494) Q Consensus 257 LVGKGvTFDt-GGislKp----~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN 315 (494) |.+- +|+ ....++. +.+. -|.+|-|+++.+++++.+.+++.+|+.+.-..|= T Consensus 64 ~~~h---~D~p~~~~~~~g~i~g~g~----D~k~gva~~l~~~~~l~~~~~~~~i~~~~~~~EE 120 (260) T 3kl9_A 64 VASH---MDESAILTANEKNIISKAW----DNRYGVLMVSELAEALSGQKLGNELYLGSNVQEE 120 (260) T ss_dssp EEEE---CCBCCEECTTSSEEEESCH----HHHHHHHHHHHHHHHHSSCCCSSEEEEEEESCCT T ss_pred EECC---CCCEEEEECCCCEEECCHH----CCHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEE T ss_conf 9856---6760377413325741410----1415565548999999744478723762323687 No 17 >>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} (A:1-183,A:343-393) Probab=88.60 E-value=1.8 Score=22.92 Aligned_cols=121 Identities=16% Similarity=0.143 Sum_probs=74.4 Q ss_pred HHHHHHHHHHCCCCCEEECHHH---HHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCC Q ss_conf 9999986420212540302999---9999998-61133210000111000134589887420257785068862057886 Q gi|254780392|r 175 VKGVNLARDIINEPANVLGTDE---FCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDS 250 (494) Q Consensus 175 aegv~lARDLvN~PaN~ltP~~---lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~ 250 (494) .+-+.+.++|++.|+---+++. .++..++ |++.|++++..+..... ....++..+.+ + T Consensus 19 ~~~~~~l~~lv~i~s~s~~~~g~~~~a~~l~~~l~~lG~~v~~~~~~~~~----------------~~~~~~~~~~~--~ 80 (234) T 1cg2_A 19 PAVIKTLEKLVNIETGTGDAEGIAAAGNFLEAELKNLGFTVTRSKSAGLV----------------VGDNIVGKIKG--R 80 (234) T ss_dssp HHHHHHHHHHHTSCCBTTCHHHHHHHHHHHHHHHHHTTCEEEEEECSTTC----------------CSEEEEEEEEC--S T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC----------------CCCEEEEEECC--C T ss_conf 99999999995899989798999999999999999789979997468876----------------67779999889--9 Q ss_pred CCCCEEEEECCEE-ECCCCCCCCC---------CCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCCEEEEEEECCCC Q ss_conf 5651266302112-0066310033---------33200232211235689999999987087--87289986410266 Q gi|254780392|r 251 EEQPLAFIGKGVV-FDTGGISIKP---------SHGMEEMKGDLGGAAAVTGLLHVLAERKA--KINAIGVLALVENM 316 (494) Q Consensus 251 ~~~piaLVGKGvT-FDtGGislKp---------~~~M~~Mk~DM~GaAav~g~~~aia~l~~--~v~v~~~~~~~EN~ 316 (494) ..++|.|.|---| |..|.....| +.+-.+| .+|-++.+.+++++.+.+. +.+|+.+.-..|-. T Consensus 81 ~~~~ill~~H~DtV~~~~~~~~~p~~~~~~~~~GpG~~D~---K~Gia~~L~al~aL~~~g~~~~~~i~~l~~~dEE~ 155 (234) T 1cg2_A 81 GGKNLLLMSHMDTVYLKGILAKAPFRVEGDKAYGPGIADD---KGGNAVILHTLKLLKEYGVRDYGTITVLFNTDEEK 155 (234) T ss_dssp SCCCEEEEEECCBSCCTTHHHHSCCEEETTEEECTTTTTT---HHHHHHHHHHHHHHHHTTCCCSSEEEEEEESCGGG T ss_pred CCCEEEEEECCCCCCCCCCCCCCCEEEECCCEEEEECCCC---CHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCC T ss_conf 9985999913673578876666530343474124421454---21277888777776530134564203213345656 No 18 >>1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown function; HET: MSE; 1.90A {Bacillus subtilis} (A:1-73,A:168-373) Probab=88.10 E-value=1.7 Score=23.11 Aligned_cols=178 Identities=12% Similarity=0.115 Sum_probs=104.0 Q ss_pred HHHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCC--CCCC Q ss_conf 999864202125403029999999998-6113321000011100013458988742025778506886205788--6565 Q gi|254780392|r 177 GVNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGD--SEEQ 253 (494) Q Consensus 177 gv~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~--~~~~ 253 (494) -+.+.|+|.+.|.--..=...++...+ |++.|+++++- .+|.+.++=.|....|++.+.-+-=.+ .... T Consensus 9 ~~~~~~~l~~~p~~s~~e~~~~~~~~~~l~~~g~~~~~~--------~~g~~~~~~~~~~~~~~i~~~~h~D~p~~~~~~ 80 (279) T 1vhe_A 9 TLTXLKDLTDAKGIPGNEREVRQVXKSYIEPFADEVTTD--------RLGSLIAKKTGAENGPKIXIAGHLDEEFTVXNN 80 (279) T ss_dssp HHHHHHHHHHSCCCTTCCHHHHHHHHHHHGGGCSEEEEC--------TTCCEEEEEESSTTSCEEEEEEECCCCCEECSS T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEC--------CCCEEEEEECCCCCCCEEEEEEECCCCEEEECC T ss_conf 999999997499989668999999999999749989990--------785699998379999769999655862156505 Q ss_pred CEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCC Q ss_conf 12663021120066310033332002322112356899999999870878728998641026689997470776302489 Q gi|254780392|r 254 PLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSG 333 (494) Q Consensus 254 piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN~~~~~a~~pgdvi~~~~G 333 (494) -=-+.|.| .+ |.+|.|+++.+++++.+.+++.+++.+.-..|=.-++. T Consensus 81 ~g~i~g~g----------------~D---~k~gva~~L~a~~~~~~~~~~~~i~~~~~~~EE~g~~g------------- 128 (279) T 1vhe_A 81 EKFLLAKA----------------WD---NRIGCAIAIDVLRNLQNTDHPNIVYGVGTVQEEVGLRG------------- 128 (279) T ss_dssp TTEEEETT----------------HH---HHHHHHHHHHHHHHHHTSCCSSEEEEEEESCCTTTSHH------------- T ss_pred CCCCCCCC----------------CC---CCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEECCC------------- T ss_conf 55332354----------------31---10035788999987652046787301122201130343------------- Q ss_pred CEEEEECCCCCCEEEEEHHHHHHHHHCCCCE--EEEECCCCH-HH------HHHCCCCCEEEE-----ECCHHHHHHHHH Q ss_conf 5888634786640365236788752079613--552111200-23------543177605787-----089899999999 Q gi|254780392|r 334 QTIEVINTDAEGRLILADALWYCRTHYNPHL--MIDLATLTG-AM------VVSLGNIYAGLF-----ANNDVLAEQLLS 399 (494) Q Consensus 334 ~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~--iid~ATLTG-a~------~~alG~~~~g~~-----~n~~~~~~~~~~ 399 (494) +..|.. .+.++. .+|+..... .. ....|+.....+ ..+..+...+.. T Consensus 129 ------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (279) T 1vhe_A 129 ------------------AKTAAH-TIQPDIAFGVDVGIAGDTPGISEKEAQSKXGKGPQIIVYDASXVSHKGLRDAVVA 189 (279) T ss_dssp ------------------HHHHHH-HHCCSEEEEEEEEECCCSTTCCTTTCCCCTTSCCEEEEEETTEECCHHHHHHHHH T ss_pred ------------------CCCEEE-EECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHH T ss_conf ------------------431111-2110244434344566665554420133322101221024765689899999999 Q ss_pred HHHHHCCCCCCCCC Q ss_conf 89985697176776 Q gi|254780392|r 400 SGLSTGELLWRMPM 413 (494) Q Consensus 400 a~~~~ge~~w~lPl 413 (494) +.......++.... T Consensus 190 ~~~~~~~~~~~~~~ 203 (279) T 1vhe_A 190 TAEEAGIPYQFDAI 203 (279) T ss_dssp HHHHHTCCCEEEEE T ss_pred HHHHCCCCCCEECC T ss_conf 99980999625427 No 19 >>2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Haemophilus somnus 129PT} (A:1-172,A:445-487) Probab=87.81 E-value=2 Score=22.58 Aligned_cols=126 Identities=13% Similarity=0.066 Sum_probs=77.3 Q ss_pred HHHHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCC----- Q ss_conf 9999864202125403029999999998-6113321000011100013458988742025778506886205788----- Q gi|254780392|r 176 KGVNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGD----- 249 (494) Q Consensus 176 egv~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~----- 249 (494) +-+.+.|+|+..|+---....+++..++ |++.|++++..+-..-.. -+...+.+...++.++.-++-.-. T Consensus 12 e~i~~L~~LI~ipSvS~~e~~~a~~l~~~l~~lG~~~e~~~~~~~~~----~~~~~~~~~~~~~i~l~~h~D~v~~~~~~ 87 (215) T 2qyv_A 12 LLWQWFDQICAIPHPSYKEEQLAQFIINWAKTKGFFAERDEVGNVLI----RKPATVGXENRKPVVLQAHLDXVPQANEG 87 (215) T ss_dssp HHHHHHHHHHHSCCBTTCCHHHHHHHHHHHHHTTCEEEECTTCCEEE----EECCCTTCTTBCCEEEEEESCBCCC---- T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCEEEE----EECCCCCCCCCCEEEEEEEECCCCCCCCC T ss_conf 99999999917999996899999999999997899899937875999----98677888999989998422517889987 Q ss_pred ----CCCCCEEE-EECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEECCCCC Q ss_conf ----65651266-302112006631003333200232211235689999999987087-872899864102668 Q gi|254780392|r 250 ----SEEQPLAF-IGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKA-KINAIGVLALVENMP 317 (494) Q Consensus 250 ----~~~~piaL-VGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~-~v~v~~~~~~~EN~~ 317 (494) -...|+.+ +.=|..| +.|..+|| +|.|+++-+++++.+.+. +.+|+.++...|-.= T Consensus 88 ~~~~w~~~Pf~~~~~d~~i~---------GrG~~D~K---g~~a~~l~a~~~lk~~~~~~~~I~~~f~~dEE~G 149 (215) T 2qyv_A 88 TNHNFDQDPILPYIDGDWVK---------AKGTTLGA---DNGIGXASALAVLESNDIAHPELEVLLTXTEERG 149 (215) T ss_dssp ------CCCCCEEECSSEEE---------ETTBCCCH---HHHHHHHHHHHHHHCSSSCCSSEEEEEESCTTTT T ss_pred CCCCCCCCCCEEEEECCEEE---------CCCCCCCC---CCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCC T ss_conf 74546679815798577998---------68853788---7625554454443311457887069999944677 No 20 >>1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.15A {Shigella flexneri 2a str} (A:1-68,A:154-348) Probab=85.91 E-value=1.6 Score=23.32 Aligned_cols=174 Identities=14% Similarity=0.060 Sum_probs=101.2 Q ss_pred HHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEE Q ss_conf 99864202125403029999999998-61133210000111000134589887420257785068862057886565126 Q gi|254780392|r 178 VNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQPLA 256 (494) Q Consensus 178 v~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~~pia 256 (494) +.+-|+|++.|+---.....++...+ +++.|+++++.+ +|.++ .++.| ++.++|+ T Consensus 6 ~~~l~~l~~~~s~s~~~~~~~~~~~~~~~~~g~~~~~~~--------~~~~~--------------~~~~~--~~~~~i~ 61 (263) T 1ylo_A 6 LSLLKALSEADAIASSEQEVRQILLEEAARLQKEVRFDG--------LGSVL--------------IRLNE--STGPKVX 61 (263) T ss_dssp HHHHHHHHHSCCBTTBCHHHHHHHHHHHHHTTCCEEECT--------TCCEE--------------EECCC--CSSCEEE T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEECC--------CCEEE--------------EEECC--CCCCEEE T ss_conf 999999972999598779999999999997399899968--------96299--------------99899--9998699 Q ss_pred EEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCEE Q ss_conf 63021120066310033332002322112356899999999870878728998641026689997470776302489588 Q gi|254780392|r 257 FIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTI 336 (494) Q Consensus 257 LVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN~~~~~a~~pgdvi~~~~G~tv 336 (494) |.|- +||=..++....-...=--|-+|.|+++.+++.+++.+++.+|+.+.--.|---. T Consensus 62 ~~~H---~D~~~~~~~~~~~~~GA~Dn~sGva~lLe~ar~l~~~~~~~~i~fv~~~~EE~g~------------------ 120 (263) T 1ylo_A 62 ICAH---XDETFQVLPHQRVXGKAFDDRLSCYLLVTLLRELHDAELPAEVWLVASSSEEVGL------------------ 120 (263) T ss_dssp EEEE---CCCCCEEETTTEEEETTHHHHHHHHHHHHHHHHHTTCCCSSEEEEEEESCCTTSS------------------ T ss_pred EEEC---CCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCC------------------ T ss_conf 9962---7750256514330122234643046777778987622456660430000001354------------------ Q ss_pred EEECCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCCHHH--------HHHCCCCCEEEE-----ECCHHHHHHHHHHHHH Q ss_conf 863478664036523678875207961355211120023--------543177605787-----0898999999998998 Q gi|254780392|r 337 EVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTGAM--------VVSLGNIYAGLF-----ANNDVLAEQLLSSGLS 403 (494) Q Consensus 337 ei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ATLTGa~--------~~alG~~~~g~~-----~n~~~~~~~~~~a~~~ 403 (494) ..+-.|++ ...++..+.+....-.- ...+|....-.+ ..+..+.+.+.+..+. T Consensus 121 -------------~Gs~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 186 (263) T 1ylo_A 121 -------------RGGQTATR-AVSPDVAIVLDTACWAKNFDYGAANHRQIGNGPXLVLSDKSLIAPPKLTAWIETVAAE 186 (263) T ss_dssp -------------HHHHHHHH-HHCCSEEEEECCCCCSSTTCCSTTCCCCTTSCCEEEEECSSCBCCHHHHHHHHHHHHH T ss_pred -------------EEECCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHCCCHHHHHH T ss_conf -------------11000103-4431012121110045531056775432023220232167666780331120147998 Q ss_pred HCCCCCC Q ss_conf 5697176 Q gi|254780392|r 404 TGELLWR 410 (494) Q Consensus 404 ~ge~~w~ 410 (494) .+-..+. T Consensus 187 ~~~~~~~ 193 (263) T 1ylo_A 187 IGVPLQA 193 (263) T ss_dssp HTCCCEE T ss_pred HCCCCEE T ss_conf 3999417 No 21 >>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp} (A:1-224,A:345-445) Probab=85.16 E-value=2.5 Score=21.84 Aligned_cols=183 Identities=13% Similarity=-0.022 Sum_probs=97.3 Q ss_pred HHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEC-CCCCCCCCCE Q ss_conf 99864202125403029999999998-611332100001110001345898874202577850688620-5788656512 Q gi|254780392|r 178 VNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKW-EGGDSEEQPL 255 (494) Q Consensus 178 v~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y-~g~~~~~~pi 255 (494) +.+-|+|+..|.--..-...++..++ |++.|++++..+...-. -..+++.=+|+...|.++..-. -.-+. T Consensus 52 ~~~~~~L~~~pe~s~~E~~t~~~i~~~L~~~G~~~~~~~~~~~~---~~~v~a~~~~~~~~~~i~l~ah~D~vp~----- 123 (325) T 3io1_A 52 ALGRDVIDADSRXGLPDEETLARAFERAREQGAPERWLPAFEGG---FAGVVATLDTGRPGPTLAFRVDXDALDL----- 123 (325) T ss_dssp EEGGGTSCSTTCCSCCCHHHHHHHHHHHHTTTCCTTTGGGGTTT---CCCEEEEEECSSCCCEEEEEEECCCCCC----- T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CEEEEEEECCCCCCCEEEEEEECCCCCC----- T ss_conf 74355445322236653100000000111235663223344677---5279999818898988999964352555----- Q ss_pred EEEECCEEECCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHC--CCCCCEEEEEEECCCCCCCCCCCHHHHHCCC Q ss_conf 6630211200663100333--32002322112356899999999870--8787289986410266899974707763024 Q gi|254780392|r 256 AFIGKGVVFDTGGISIKPS--HGMEEMKGDLGGAAAVTGLLHVLAER--KAKINAIGVLALVENMPGSSAQRPGDIVRSM 331 (494) Q Consensus 256 aLVGKGvTFDtGGislKp~--~~M~~Mk~DM~GaAav~g~~~aia~l--~~~v~v~~~~~~~EN~~~~~a~~pgdvi~~~ 331 (494) --..+.++|.-...++.. .+| ..-.+.++.|+.+++++++.++ +++.+|+.+.-..|-..++ T Consensus 124 -~e~~~~~~~p~~~~~~~~~~~g~-ga~d~kg~~a~~l~a~~~L~~~~~~~~g~i~l~f~~~EE~g~g------------ 189 (325) T 3io1_A 124 -NEQHDDSHRPHRDHFASCNAGXX-HACGHDGHTAIGLGLAHVLKQYAAQLNGVIKLIFQPAEEGTRG------------ 189 (325) T ss_dssp ---------------------------CTTCTHHHHHHHHHHHHHHTGGGCCSEEEEEEESCTTTTCH------------ T ss_pred -CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCC------------ T ss_conf -11478887764323466788766-6424332045667888876302346786798610345411111------------ Q ss_pred CCCEEEEECCCCCCEEEEEHHHHHHHHH--CCCCEEEEECCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHH-CCC Q ss_conf 8958886347866403652367887520--796135521112002354317760578708989999999989985-697 Q gi|254780392|r 332 SGQTIEVINTDAEGRLILADALWYCRTH--YNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLST-GEL 407 (494) Q Consensus 332 ~G~tvei~nTDAEGRlvLaD~l~ya~~~--~~p~~iid~ATLTGa~~~alG~~~~g~~~n~~~~~~~~~~a~~~~-ge~ 407 (494) +..+.... -+++.++-+=.-.+ .....-|.-+-|+++.+.+.++.+.. |+. T Consensus 190 --------------------g~~~~~~~~~~~~d~~~~~h~~~~-----~~~g~ig~~ggd~~~~~~~~~~~~~~~g~~ 243 (325) T 3io1_A 190 --------------------ARAXVAAGVVDDVDYFTAIHIGTG-----VPAGTVVCGGDSPAWVDYLREQAARVPGVQ 243 (325) T ss_dssp --------------------HHHHHHTTTTTTCSEEEEEEEEEE-----EETTBEESCCCCHHHHHHHHHHHHHSTTCC T ss_pred --------------------HHHHHHHCCCCCCCEEEEEECCCC-----CCCCCCCCCCCCHHHHHHHHHHHHHHHCCC T ss_conf --------------------799997276655642566401022-----233210011229999999999999850841 No 22 >>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp} (A:1-167,A:314-364) Probab=85.12 E-value=2.7 Score=21.64 Aligned_cols=125 Identities=14% Similarity=0.102 Sum_probs=76.4 Q ss_pred HHHHHHHHHHCCCCCEEECHH---HHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCC Q ss_conf 999998642021254030299---99999998-61133210000111000134589887420257785068862057886 Q gi|254780392|r 175 VKGVNLARDIINEPANVLGTD---EFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDS 250 (494) Q Consensus 175 aegv~lARDLvN~PaN~ltP~---~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~ 250 (494) .+-+.+.|+|++.|..--.+. ..++..++ |++.|+++++.+.. .+..+....+...|+-++.-+|-.-.- T Consensus 6 e~~iell~~Lv~ipS~S~~~~~~~~~a~~l~~~L~~~G~~v~~~~~~------~~~~~~~~~~~~~p~I~l~~H~Dtv~w 79 (218) T 2rb7_A 6 QHIVELTSDLIRFPSXHSRPEQISRCAGFIXDWCAQNGIHAERXDHD------GIPSVXVLPEKGRAGLLLXAHIDVVDA 79 (218) T ss_dssp HHHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHHTTCCCEEEEET------TEEEEEECSBTTEEEEEEEEECCCCCC T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCC------CEEEEEEEECCCCCEEEEEEECCCCCC T ss_conf 99999999995799989584789999999999999779979998059------977999981799985999830461575 Q ss_pred CCCCE-EEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------CCCCCCEEEEEEECCCCC Q ss_conf 56512-66302112006631003333200232211235689999999987-------087872899864102668 Q gi|254780392|r 251 EEQPL-AFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAE-------RKAKINAIGVLALVENMP 317 (494) Q Consensus 251 ~~~pi-aLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~-------l~~~v~v~~~~~~~EN~~ 317 (494) ...|. ..+-.|..| +.|-.+|| +|-++++.+++++.+ ..++.+|+.+.-..|-.= T Consensus 80 ~~~p~~~~~~d~~l~---------GrG~aD~K---gg~a~~l~al~~l~~~~~~~~~~~~~~~I~~if~~dEE~G 142 (218) T 2rb7_A 80 EDDLFVPRVENDRLY---------GRGANDDK---YAVALGLVXFRDRLNALKAAGRSQKDXALGLLITGDEEIG 142 (218) T ss_dssp CGGGGSCEEETTEEE---------STTTTTTH---HHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEEESCGGGT T ss_pred CCCCCCCCCCCCCCC---------CCCCCCCC---CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCC T ss_conf 555553222233211---------12234555---1167788889988877775057788965999999624555 No 23 >>2gre_A Deblocking aminopeptidase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 2.65A {Bacillus cereus} (A:1-72,A:171-349) Probab=84.46 E-value=2.9 Score=21.44 Aligned_cols=113 Identities=16% Similarity=0.177 Sum_probs=73.6 Q ss_pred HHHHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCC Q ss_conf 9999864202125403029999999998-611332100001110001345898874202577850688620578865651 Q gi|254780392|r 176 KGVNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQP 254 (494) Q Consensus 176 egv~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~~p 254 (494) +-+.+.|+|++.|..-..-...++..++ |++.|++|+... +|.+++ .+.+. .+.++ T Consensus 7 ~~~~~~~~l~~~~s~s~~e~~~~~~~~~~l~~~g~~~~~~~--------~~~~~~--------------~~~~~-~~~~~ 63 (251) T 2gre_A 7 ETXELIKELVSIPSPSGNTAKIINFIENYVSEWNVETKRNN--------KGALIL--------------TVKGK-NDAQH 63 (251) T ss_dssp HHHHHHHHHHTSCCBTTCCHHHHHHHHHHTTTSSSEEEECS--------SSCEEE--------------EECCS-EEEEE T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEC--------CCCEEE--------------EECCC-CCCCE T ss_conf 99999999973999796899999999999997699899977--------982999--------------98788-99975 Q ss_pred EEEEECC--EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC--CCCCCEEEEEEECCCC Q ss_conf 2663021--120066310033332002322112356899999999870--8787289986410266 Q gi|254780392|r 255 LAFIGKG--VVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAER--KAKINAIGVLALVENM 316 (494) Q Consensus 255 iaLVGKG--vTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l--~~~v~v~~~~~~~EN~ 316 (494) |+|.|-= |.++.-+=.|.++. . + |.+|.|+++-+++.+.+. +++.+|+.+.-..|-. T Consensus 64 i~~~~h~D~v~~~~~~~~i~ggg-~-D---~k~G~a~~L~~ar~L~~~~~~~~~~I~~~~~~~EE~ 124 (251) T 2gre_A 64 RLLTAHVDTRVQITESGYIKSRH-L-D---DKVSVAILLKLIKRLQDENVTLPYTTHFLISNNEEI 124 (251) T ss_dssp EEEEEECCBCCEECTTSEEEESC-C-T---THHHHHHHHHHHHHHHHHTCCCSEEEEEEEESCC-- T ss_pred EEEEECCCCEEEEEECCCCEEEC-C-C---CCCHHHHHHHHHHHHHHHCCCCCCCCEECCCEEEEE T ss_conf 99983344389999505300102-3-4---532068899999975652445456512112035665 No 24 >>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural genomics, PSI, protein structure initiative; 2.40A {Bacillus subtilis} (A:1-195,A:324-404) Probab=81.62 E-value=3.7 Score=20.69 Aligned_cols=128 Identities=18% Similarity=0.244 Sum_probs=75.9 Q ss_pred HHHHHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEE-EECCCCCCCC Q ss_conf 99999864202125403029999999998-611332100001110001345898874202577850688-6205788656 Q gi|254780392|r 175 VKGVNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAV-MKWEGGDSEE 252 (494) Q Consensus 175 aegv~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~-l~Y~g~~~~~ 252 (494) .+-+.+.|+|++.|.---.....++.+.+ |++.|++++..+. +-+.+.++-.|....|.+.. -++-.-+..+ T Consensus 32 ~~~i~~~~~L~~iPs~s~~E~~ta~~i~~~L~~~G~~v~~~~~------~~~~v~~~~~g~~~~~~I~l~ah~D~vp~~~ 105 (276) T 1ysj_A 32 TRLINXRRDLHEHPELSFQEVETTKKIRRWLEEEQIEILDVPQ------LKTGVIAEIKGREDGPVIAIRADIDALPIQE 105 (276) T ss_dssp HHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHTTCEECCCTT------CSSCEEEEEECSSCCCEEEEEEECCCBSCCC T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEECC------CCCEEEEEEECCCCCCEEEEEEECCCCCCCC T ss_conf 9999999999968687880899999999999988991899659------9887999990899898699998775587745 Q ss_pred CCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECCCCCCCC Q ss_conf 5126630211200663100333320023221123568999999998708--7872899864102668999 Q gi|254780392|r 253 QPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERK--AKINAIGVLALVENMPGSS 320 (494) Q Consensus 253 ~piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~--~~v~v~~~~~~~EN~~~~~ 320 (494) .....|++. ..+....-.+.++.++.+++++++.+.+ ++.+|+.+.-..|-..+|. T Consensus 106 ------~~~~~~~~~------~~g~~~a~g~~~~~a~~l~a~~~l~~~~~~l~g~i~lif~~~EE~g~g~ 163 (276) T 1ysj_A 106 ------QTNLPFASK------VDGTXHACGHDFHTASIIGTAXLLNQRRAELKGTVRFIFQPAEEIAAGA 163 (276) T ss_dssp ------CCCCTTCCS------STTCBCTTSHHHHHHHHHHHHHHHHTCGGGCSSEEEEEEESCTTTTCHH T ss_pred ------CCCCCCCCC------CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC T ss_conf ------668875301------0885405555433115788888888875257985899822643322210 No 25 >>1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG, AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} (A:1-194,A:309-418) Probab=81.07 E-value=3.8 Score=20.56 Aligned_cols=180 Identities=16% Similarity=0.090 Sum_probs=101.1 Q ss_pred HHHHHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC Q ss_conf 99999864202125403029999999998-61133210000111000134589887420257785068862057886565 Q gi|254780392|r 175 VKGVNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQ 253 (494) Q Consensus 175 aegv~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~~ 253 (494) .+-+.+.|+|+..|.--..-...++.+++ |++.|++++..... +.+.+.-.|...|+-++.-++-.-+... T Consensus 28 ~~~i~~~~~L~~~pe~S~~E~~ta~~i~~~L~~~G~~v~~~~~~-------~~i~~~~~~~~~~~I~l~ah~D~vp~~~- 99 (304) T 1xmb_A 28 DWMVKIRRKIHENPELGYEELETSKLIRSELELIGIKYRYPVAI-------TGVIGYIGTGEPPFVALRADMDALPIQE- 99 (304) T ss_dssp HHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHTCCEEEEETT-------TEEEEEEESSSSCEEEEEEECCCBSCCC- T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCC-------CEEEEEECCCCCCEEEEEECCCCCCCCC- T ss_conf 99999999998475867848999999999999879968976888-------3799998589998799970520022314- Q ss_pred CEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC--CCCCCEEEEEEECCCCCCCCCCCHHHHHCCC Q ss_conf 12663021120066310033332002322112356899999999870--8787289986410266899974707763024 Q gi|254780392|r 254 PLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAER--KAKINAIGVLALVENMPGSSAQRPGDIVRSM 331 (494) Q Consensus 254 piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l--~~~v~v~~~~~~~EN~~~~~a~~pgdvi~~~ 331 (494) ..+..|.+. ..++..--.+.++.|+.+++++.+.++ +++.+|+.+..-.|-..++. T Consensus 100 -----~~~~~~~~~------~~g~~gacg~~~~~a~~L~aa~~l~~~~~~~~g~i~~if~~~EE~g~g~----------- 157 (304) T 1xmb_A 100 -----GVEWEHKSK------IAGKMHACGHDGHVTMLLGAAKILHEHRHHLQGTVVLIFQPAEEGLSGA----------- 157 (304) T ss_dssp -----CCCSTTCCS------STTCBCCSSHHHHHHHHHHHHHHHHHTGGGCSSEEEEEEECCTTTTCHH----------- T ss_pred -----CCCCCCCCC------CCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH----------- T ss_conf -----777665665------5510234464405688999988887656513853798305652033556----------- Q ss_pred CCCEEEEECCCCCCEEEEEHHHHHHHHH--CCCCEEEEEC--CC--CHHHHHHCC---CCCEEEEECCHHHHHHHHHHHH Q ss_conf 8958886347866403652367887520--7961355211--12--002354317---7605787089899999999899 Q gi|254780392|r 332 SGQTIEVINTDAEGRLILADALWYCRTH--YNPHLMIDLA--TL--TGAMVVSLG---NIYAGLFANNDVLAEQLLSSGL 402 (494) Q Consensus 332 ~G~tvei~nTDAEGRlvLaD~l~ya~~~--~~p~~iid~A--TL--TGa~~~alG---~~~~g~~~n~~~~~~~~~~a~~ 402 (494) ..+.... -+|+.+|-+- .- +|-+.+--| +.| ...-||.++.+.+.++.+ T Consensus 158 ---------------------~~~i~~~~~~~~d~~i~~h~~~~~~~G~i~~~~G~~~~~~-p~~~Nd~~~~~~~~~~~~ 215 (304) T 1xmb_A 158 ---------------------KKMREEGALKNVEAIFGIHLSARIPFGKAASRAGSFLEPM-PPTVNNKDLYKQFKKVVR 215 (304) T ss_dssp ---------------------HHHHHTTTTTTEEEEEEEEEEEEEETTCEEECSEEEECCB-CCEEECHHHHHHHHHHHH T ss_pred ---------------------HHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHH T ss_conf ---------------------7999767655887403542023456534310147541258-754489999999999999 Q ss_pred HH-CC Q ss_conf 85-69 Q gi|254780392|r 403 ST-GE 406 (494) Q Consensus 403 ~~-ge 406 (494) .. |+ T Consensus 216 ~~~g~ 220 (304) T 1xmb_A 216 DLLGQ 220 (304) T ss_dssp HHHCG T ss_pred HHHCC T ss_conf 86196 No 26 >>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE; 1.86A {Thermotoga maritima} (A:1-70,A:158-346) Probab=79.99 E-value=3.7 Score=20.65 Aligned_cols=173 Identities=12% Similarity=0.037 Sum_probs=98.1 Q ss_pred HHHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCE Q ss_conf 999864202125403029999999998-6113321000011100013458988742025778506886205788656512 Q gi|254780392|r 177 GVNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQPL 255 (494) Q Consensus 177 gv~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~~pi 255 (494) -+.+-|+|++.|.---.....++..++ |++.|+++++.+.. . ++..|.|.+ .+.| T Consensus 7 ~~~~l~~l~~~~s~s~~e~~~~~~l~~~l~~~g~~~~~~~~~--------~--------------~~~~~~g~~--~~~i 62 (259) T 1vho_A 7 TGKLLXELSNLDGPSGYETNVVSYIKSVIEPFVDEAKTTRHG--------S--------------LIGYKKGKG--IGKL 62 (259) T ss_dssp HHHHHHHHHHSCCBTTCCHHHHHHHHHHHGGGCSEEEECTTS--------C--------------EEEEECCSS--SCEE T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCC--------E--------------EEEEECCCC--CCCE T ss_conf 999999996399969648999999999999759989993697--------3--------------999988889--9738 Q ss_pred EEEECCEEECC-CCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCC Q ss_conf 66302112006-6310033332-002322112356899999999870878728998641026689997470776302489 Q gi|254780392|r 256 AFIGKGVVFDT-GGISIKPSHG-MEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSG 333 (494) Q Consensus 256 aLVGKGvTFDt-GGislKp~~~-M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN~~~~~a~~pgdvi~~~~G 333 (494) +|.|- +|+ ++.. ... ...---|.+|-|++|.+++.+...+++.+|+.+.--.|-.- T Consensus 63 ~~~~H---~D~~~~~~---~~~~~~Ga~Dn~sGva~lLelar~l~~~~~~~ti~fv~~~~EE~g---------------- 120 (259) T 1vho_A 63 AFFAH---VDETAFET---NGKVVGKALDNRASCGVLVKVLEFLKRYDHPWDVYVVFSVQEETG---------------- 120 (259) T ss_dssp EEEEE---CCBCCEEE---TTEEEETTHHHHHHHHHHHHHHHHHTTCCCSSEEEEEEECTTSSS---------------- T ss_pred EEEEC---CCCEEEEE---CCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECC---------------- T ss_conf 99971---57789970---374886232142347889999999873366777420000221026---------------- Q ss_pred CEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEEC----CCCHHHH-HHCCCCCEEE--EECCHHHHHHHHHHHHHHCC Q ss_conf 588863478664036523678875207961355211----1200235-4317760578--70898999999998998569 Q gi|254780392|r 334 QTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLA----TLTGAMV-VSLGNIYAGL--FANNDVLAEQLLSSGLSTGE 406 (494) Q Consensus 334 ~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~A----TLTGa~~-~alG~~~~g~--~~n~~~~~~~~~~a~~~~ge 406 (494) +.-+-.|+ .++.++..+... ..++... ...+...... ...+..+...+.+..+..+- T Consensus 121 ---------------~~Gs~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 184 (259) T 1vho_A 121 ---------------CLGALTGA-YEINPDAAIVXDVTFASEPPFSDHIELGKGPVIGLGPVVDRNLVQKIIEIAKKHNV 184 (259) T ss_dssp ---------------HHHHHHTT-CCCCCSEEEEEEEECCCCTTSCCCCCTTSCCEEECSTTSCHHHHHHHHHHHHHTTC T ss_pred ---------------CCCCCEEE-EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC T ss_conf ---------------76774210-24330001001343356654443320110121124543442035566555686478 Q ss_pred CCCCC Q ss_conf 71767 Q gi|254780392|r 407 LLWRM 411 (494) Q Consensus 407 ~~w~l 411 (494) +.+.- T Consensus 185 ~~~~~ 189 (259) T 1vho_A 185 SLQEE 189 (259) T ss_dssp CCEEE T ss_pred CCCEE T ss_conf 87636 No 27 >>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} (A:) Probab=79.05 E-value=4.4 Score=20.12 Aligned_cols=125 Identities=13% Similarity=0.108 Sum_probs=68.1 Q ss_pred HHHHHHHHHHCCCCCEE-E--CHHHHHHHHHH-HHCCCCCHHHHCCCCCC--HHHHHHHHHHHCCCCCCCEEEEEECCCC Q ss_conf 99999864202125403-0--29999999998-61133210000111000--1345898874202577850688620578 Q gi|254780392|r 175 VKGVNLARDIINEPANV-L--GTDEFCKQVRK-LESLGVAVEILDKEAMH--KLGMNALLAVAQGSSRPPYLAVMKWEGG 248 (494) Q Consensus 175 aegv~lARDLvN~PaN~-l--tP~~lA~~a~~-l~~~gl~v~Vld~~~L~--klGMg~llaVgqGS~~~Prli~l~Y~g~ 248 (494) .+-+.+.|+|++.|+-. . .-...++..++ |++.|++|++.+..... ..+.+-+++.=+|++..+ T Consensus 20 ~~~~~~l~~lv~i~s~~~~s~~e~~~~~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~nvv~~~~g~d~~~---------- 89 (299) T 1rtq_A 20 SQITGTISSLESFTNRFYTTTSGAQASDWIASEWQALSASLPNASVKQVSHSGYNQKSVVMTITGSEAPD---------- 89 (299) T ss_dssp HHHHHHHHHHHTSSCCCTTSHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEETTEEEEEEEEEECCSSEEE---------- T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEECCCCCCC---------- T ss_conf 9999999996087886769830799999999999996161589659997058866762799963888988---------- Q ss_pred CCCCCCEEEEECCEEECCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECCCC Q ss_conf 8656512663021120066310033-3320023221123568999999998708--787289986410266 Q gi|254780392|r 249 DSEEQPLAFIGKGVVFDTGGISIKP-SHGMEEMKGDLGGAAAVTGLLHVLAERK--AKINAIGVLALVENM 316 (494) Q Consensus 249 ~~~~~piaLVGKGvTFDtGGislKp-~~~M~~Mk~DM~GaAav~g~~~aia~l~--~~v~v~~~~~~~EN~ 316 (494) +++.+.+.==++..+.-.-+. +.|-.+| .+|-|+.+.+++++.+.+ ++.+|+.+.-..|-- T Consensus 90 ----~~i~~~ah~D~~~~~~~~~~~~g~Ga~D~---k~g~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 153 (299) T 1rtq_A 90 ----EWIVIGGHLDSTIGSHTNEQSVAPGADDD---ASGIAAVTEVIRVLSENNFQPKRSIAFMAYAAEEV 153 (299) T ss_dssp ----EEEEEEEECCCCSSTTCCTTCCCCCTTTT---HHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGG T ss_pred ----CEEEEEEECCCCCCCCCCCCCCCCCCCCC---HHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHH T ss_conf ----88999810277898876678888997564---03299999999999873268766168850063144 No 28 >>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20/M25/M40, structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482} (A:1-165,A:311-356) Probab=74.58 E-value=5.8 Score=19.29 Aligned_cols=127 Identities=12% Similarity=0.147 Sum_probs=78.6 Q ss_pred HHHHHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECC---CCCC Q ss_conf 99999864202125403029999999998-6113321000011100013458988742025778506886205---7886 Q gi|254780392|r 175 VKGVNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWE---GGDS 250 (494) Q Consensus 175 aegv~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~---g~~~ 250 (494) .+-+.+.++|++-|.---....+++...+ |++.|+++++.+.. ....+..+....|+++..-+- |... T Consensus 11 ~~~i~~l~~li~ipS~S~~e~~~a~~l~~~l~~lG~~v~~~~~~--------~~~~~~~~~~~~~~v~l~~H~DtVp~~~ 82 (211) T 3ct9_A 11 AEAVSLLKSLISIPSISREETQAADFLQNYIEAEGXQTGRKGNN--------VWCLSPXFDLKKPTILLNSHIDTVKPVN 82 (211) T ss_dssp HHHHHHHHHHHTSCCBTTCCHHHHHHHHHHHHHTTCCEEEETTE--------EEEECSSCCTTSCEEEEEEECCBCCCC- T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCC--------EEEEEECCCCCCCEEEEECCCCCCCCCC T ss_conf 99999999995799999788999999999999779856983698--------8999754689998599975678888866 Q ss_pred --CCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC Q ss_conf --5651266302112006631003333200232211235689999999987087872899864102668999 Q gi|254780392|r 251 --EEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSS 320 (494) Q Consensus 251 --~~~piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN~~~~~ 320 (494) ...|+..+-.+ |-+ . +.|..+| .+|.|+++.+++.+.+.+++.+++.+.-..|-..|.. T Consensus 83 ~w~~~P~~~~~~~-----~~l--~-GrG~~D~---kggva~~l~a~~~l~~~~~~~~i~~i~~~~EE~gg~~ 143 (211) T 3ct9_A 83 GWRKDPFTPREEN-----GKL--Y-GLGSNDA---GASVVSLLQVFLQLCRTSQNYNLIYLASCEEEVSGKE 143 (211) T ss_dssp ------CCCEECS-----SEE--E-STTTTTT---HHHHHHHHHHHHHHTTSCCSSEEEEEEECCGGGTCTT T ss_pred CCCCCCCCCCCCC-----CCC--C-CHHHHHH---HHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC T ss_conf 6445632232233-----323--1-0122100---1668899999998531022332011012012324566 No 29 >>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP dipeptidase 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A* (A:1-203,A:447-479) Probab=70.39 E-value=7.2 Score=18.64 Aligned_cols=135 Identities=18% Similarity=0.171 Sum_probs=72.3 Q ss_pred HHHHHHHHHHCCCCCEEEC--HH----HHHHHHH-HHHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCC Q ss_conf 9999986420212540302--99----9999999-861133210000111000134589887420257785068862057 Q gi|254780392|r 175 VKGVNLARDIINEPANVLG--TD----EFCKQVR-KLESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEG 247 (494) Q Consensus 175 aegv~lARDLvN~PaN~lt--P~----~lA~~a~-~l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g 247 (494) .+-+...++|+..|.-.-. |. ..++... .|++.|++++..+....... ..+....+-.++-+.+ T Consensus 20 ~~~~~~l~~lv~i~s~s~~~~~s~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~~---------~~~~~~~~~~v~~~~~ 90 (236) T 2zog_A 20 DRYVKKLAEWVAIQSVSAWPEKRGEIRRMMEVAAADVQRLGGSVELVDIGKQKLP---------DGSEIPLPPILLGKLG 90 (236) T ss_dssp HHHHHHHHHHHHSCCBTTCGGGHHHHHHHHHHHHHHHHHTTCEEEEECCCEEECT---------TSCEEECCCEEEEEEC T ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC---------CCCCCCCCCEEEEEEC T ss_conf 9999999999778984939766589999999999999976995999945775466---------6666788758999967 Q ss_pred CCCCCCCEEEEECCEEEC---CCCCCCCC-----------CCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCCEEEEEE Q ss_conf 886565126630211200---66310033-----------33200232211235689999999987087--872899864 Q gi|254780392|r 248 GDSEEQPLAFIGKGVVFD---TGGISIKP-----------SHGMEEMKGDLGGAAAVTGLLHVLAERKA--KINAIGVLA 311 (494) Q Consensus 248 ~~~~~~piaLVGKGvTFD---tGGislKp-----------~~~M~~Mk~DM~GaAav~g~~~aia~l~~--~v~v~~~~~ 311 (494) .....++|.|.|-.=|-- .+...-.| +.|-. -|.+|.|+.+.+++++.+.+. +.+|+.+.- T Consensus 91 ~~~~~~~I~l~~H~DtVp~~~~~~~~~~p~~~~~~~~~~~g~Ga~---D~k~gva~~l~a~~~L~~~~~~~~~~I~~~f~ 167 (236) T 2zog_A 91 SDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVEREGKLYGRGST---DDKGPVAGWMNALEAYQKTGQEIPVNLRFCLE 167 (236) T ss_dssp CCTTSCEEEEEEECCBCCCCGGGTCSSCTTSCEEETTEEESTTTT---TTHHHHHHHHHHHHHHHHTTCCCSSEEEEEEE T ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCEEEECCC---CCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEE T ss_conf 899989899975764018988654455775216627837830633---56656646667888864101268986389861 Q ss_pred ECCC--CCCCCC Q ss_conf 1026--689997 Q gi|254780392|r 312 LVEN--MPGSSA 321 (494) Q Consensus 312 ~~EN--~~~~~a 321 (494) ..|- |.+..+ T Consensus 168 ~~EE~G~~Gs~~ 179 (236) T 2zog_A 168 GMEESGSEGLDE 179 (236) T ss_dssp SCGGGTCTTHHH T ss_pred CCCHHHHHHHHH T ss_conf 231124555899 No 30 >>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis H37RV} (A:226-324) Probab=69.70 E-value=2.2 Score=22.31 Aligned_cols=33 Identities=15% Similarity=0.240 Sum_probs=27.0 Q ss_pred CEEEEEEECCCCCCCCC-CCHHHHHCCCCCCEEE Q ss_conf 28998641026689997-4707763024895888 Q gi|254780392|r 305 NAIGVLALVENMPGSSA-QRPGDIVRSMSGQTIE 337 (494) Q Consensus 305 ~v~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tve 337 (494) .-+-|.-..+|.|...| .+|||+|.+-||+.|. T Consensus 17 ~~v~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~ 50 (99) T 1y8t_A 17 LGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPIN 50 (99) T ss_dssp SSEEEEEECTTSTTTTTTCCTTCEEEEETTEECC T ss_pred CCCCEEEECCCCHHHHCCCCCCCEEEEECCEECC T ss_conf 6740001258985898799999999988998978 No 31 >>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha- beta protein, hydrolase; 2.20A {Escherichia coli} (A:220-318) Probab=69.09 E-value=2.3 Score=22.07 Aligned_cols=59 Identities=14% Similarity=0.066 Sum_probs=39.1 Q ss_pred CCCCCC-EEEEEEECCCCCCCCC-CCHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEEC Q ss_conf 087872-8998641026689997-470776302489588863478664036523678875207961355211 Q gi|254780392|r 300 RKAKIN-AIGVLALVENMPGSSA-QRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLA 369 (494) Q Consensus 300 l~~~v~-v~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~A 369 (494) ++.+.+ =+-+....++.|...+ .+|||+|++.||..|.=. +-+.++...+.+...|.+- T Consensus 19 ~g~~~~~gv~V~~v~~~spA~~~GL~~GD~I~~ing~~i~~~-----------~~~~~~l~~~~~g~~v~i~ 79 (99) T 1te0_A 19 GGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISA-----------LETMDQVAEIRPGSVIPVV 79 (99) T ss_dssp SCSSSCCCEEEEEECTTSTTTTTCCCTTCCEEEETTEECCCH-----------HHHHHHHHTSCTTCEEEEE T ss_pred HCCCCCCCCEEEEECCCCHHHHCCCCCCCEEEEECCEECCCH-----------HHHHHHHHHCCCCCEEEEE T ss_conf 066566773455426898588869998999999899997899-----------9999999728998989999 No 32 >>2cf4_A Protein PH0519, phtet1-12S; aminopeptidase, metalloprotein, hyperthermophIle, archaea, tetrahedral, hydrolase; 3.08A {Pyrococcus horikoshii} (A:1-65,A:158-332) Probab=68.00 E-value=8 Score=18.30 Aligned_cols=108 Identities=10% Similarity=0.068 Sum_probs=72.0 Q ss_pred HHHHHHHCCCCCEEECHHHHHHHHHHH-HCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEE Q ss_conf 998642021254030299999999986-1133210000111000134589887420257785068862057886565126 Q gi|254780392|r 178 VNLARDIINEPANVLGTDEFCKQVRKL-ESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQPLA 256 (494) Q Consensus 178 v~lARDLvN~PaN~ltP~~lA~~a~~l-~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~~pia 256 (494) +.+.|+|++.|+=--.+...++..++. ++.|++++--. --++.+|.|+ +++|+ T Consensus 5 ~~~~~~lv~~~s~s~~~~~~~~~~~~~~~~~g~~~~~~~-----------------------~~~~~~~~~~---~~~i~ 58 (240) T 2cf4_A 5 IEKLKKFTQIPGISGYEERIREEIIREIKDFADYKVDAI-----------------------GNLIVELGEG---EERIL 58 (240) T ss_dssp HHHHHHHHHSCCCTTCCHHHHHHHHHTTTTSSCCEECSS-----------------------SCEEECCSCS---SCCCE T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEECCC-----------------------CEEEEEECCC---CCEEE T ss_conf 999999973999797779999999999986599898578-----------------------7699998899---98699 Q ss_pred EEECCEEECCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC Q ss_conf 63021120066--3100333320023221123568999999998708787289986410266 Q gi|254780392|r 257 FIGKGVVFDTG--GISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENM 316 (494) Q Consensus 257 LVGKGvTFDtG--GislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN~ 316 (494) |.|--=|..+| |=-+.|+. . -|.+|.|+.+-+++.+++.+++.+|+.+.-..|-. T Consensus 59 ~~~H~D~~~~~~~~~~~~~GA-~----Dn~sGva~lLe~ar~l~~~~~~~~i~fvf~~~EE~ 115 (240) T 2cf4_A 59 FXAHXDEHFSVLNGKYVSTRG-L----DDRFGVVALIEAIKDLVDHELEGKVIFAFTVQEEV 115 (240) T ss_dssp EEEECCCCCEECSSSEEECTT-H----HHHHHHHHHHHHHHSSGGGCCSSCCEEEEESSCTT T ss_pred EEECCCCEEEEECCCCCCCCC-C----CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEC T ss_conf 993477347996363223453-4----56310355689999987421356533331002211 No 33 >>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis MC58} (A:1-179,A:302-393) Probab=65.91 E-value=8.8 Score=18.02 Aligned_cols=126 Identities=10% Similarity=0.034 Sum_probs=68.5 Q ss_pred HHHHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCC Q ss_conf 9999864202125403029999999998-611332100001110001345898874202577850688620578865651 Q gi|254780392|r 176 KGVNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQP 254 (494) Q Consensus 176 egv~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~~p 254 (494) +-+.+.|+|++.|.---.....++..++ |++.|+++++.+... ....+.+.....|.++.+-+.-.- T Consensus 7 ~~~~~l~~L~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~h~D~V----- 74 (271) T 1vgy_A 7 QSLELAKELISRPSVTPDDRDCQKLXAERLHKIGFAAEEXHFGN-------TKNIWLRRGTKAPVVCFAGHTDVV----- 74 (271) T ss_dssp HHHHHHHHHHTSCCBTTCCTTHHHHHHHHHHTTTCEEEECCBTT-------BCEEEEEECSSSSEEEEEEECCBC----- T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECC-------CCEEEEEECCCCCEEEEECCCCCC----- T ss_conf 99999999838999798889999999999997899589997099-------328999948999879998875648----- Q ss_pred EEEEECCEEECCCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHCCCC--CCEEEEEEECCCC Q ss_conf 2663021120066310033----332002322112356899999999870878--7289986410266 Q gi|254780392|r 255 LAFIGKGVVFDTGGISIKP----SHGMEEMKGDLGGAAAVTGLLHVLAERKAK--INAIGVLALVENM 316 (494) Q Consensus 255 iaLVGKGvTFDtGGislKp----~~~M~~Mk~DM~GaAav~g~~~aia~l~~~--v~v~~~~~~~EN~ 316 (494) ....++..++|.-....+- +.+..+ |.+|.|+.+.+++++.+.+.+ .+|+.+.-..|-. T Consensus 75 ~~~~~~~~~~~p~~~~~~~~~~~grG~~D---~k~gva~~l~a~~~l~~~~~~~~~~i~~~f~~~EE~ 139 (271) T 1vgy_A 75 PTGPVEKWDSPPFEPAERDGRLYGRGAAD---XKTSIACFVTACERFVAKHPNHQGSIALLITSDEEG 139 (271) T ss_dssp CCCCGGGSSSCTTSCEEETTEEESTTTTT---THHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSS T ss_pred CCCCCCCCCCCCCCCEEECCCEEECCCCC---CCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEC T ss_conf 89986454224436689806324313244---303446678999975212556466556756743121 No 34 >>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} (A:) Probab=63.76 E-value=9.6 Score=17.75 Aligned_cols=126 Identities=10% Similarity=0.016 Sum_probs=69.9 Q ss_pred HHHHHHHHHCCCCCEEECH--HHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC Q ss_conf 9999864202125403029--999999998-6113321000011100013458988742025778506886205788656 Q gi|254780392|r 176 KGVNLARDIINEPANVLGT--DEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEE 252 (494) Q Consensus 176 egv~lARDLvN~PaN~ltP--~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~ 252 (494) +.+.+.|+|++.|.---.| ...++..++ |++.|+.++...... +.+.+++. +.+...+. T Consensus 11 ~~~~~l~~lv~ips~s~~~~e~~~a~~i~~~l~~~G~~~~~~~~~~----~~~~~~~~--------------~~~~~~~~ 72 (198) T 1q7l_A 11 PSVTLFRQYLRIRTVQPKPDYGAAVAFFEETARQLGLGCQKVEVAP----GYVVTVLT--------------WPGTNPTL 72 (198) T ss_dssp HHHHHHHHHHTSCCBTTSCCHHHHHHHHHHHHHHHTCEEEEEEEET----TEEEEEEE--------------ECCSSTTS T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC----CCEEEEEE--------------EECCCCCC T ss_conf 9999999996889999494899999999999998799289997179----97589999--------------70689988 Q ss_pred CCEEEEECCEEECCCCCC----------CC----CCCCCHHHHHHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECCCC Q ss_conf 512663021120066310----------03----33320023221123568999999998708--787289986410266 Q gi|254780392|r 253 QPLAFIGKGVVFDTGGIS----------IK----PSHGMEEMKGDLGGAAAVTGLLHVLAERK--AKINAIGVLALVENM 316 (494) Q Consensus 253 ~piaLVGKGvTFDtGGis----------lK----p~~~M~~Mk~DM~GaAav~g~~~aia~l~--~~v~v~~~~~~~EN~ 316 (494) ++|.|.|--=|-..+.-. +. .+.+. -.|++|.++.+.+++++.+.+ ++.+|+.+.-..|-. T Consensus 73 ~~ill~~H~D~Vp~~~~~~~~~~~~~~~~~~~~~~grG~---~D~k~~~~~~l~a~~~l~~~~~~~~~~i~~~f~~~EE~ 149 (198) T 1q7l_A 73 SSILLNSHTDVVPVFKEHWSHDPFEAFKDSEGYIYARGA---QDMKCVSIQYLEAVRRLKVEGHRFPRTIHMTFVPDEEV 149 (198) T ss_dssp CEEEEEEECCBCCCCGGGCSSCTTTCCBCTTSEEECTTT---TTTHHHHHHHHHHHHHHHHTTCCCSSCEEEEEESCGGG T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCC---CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC T ss_conf 869998155502776667756996301113573427876---45750389999999999982998887589999867443 Q ss_pred C--CCCCC Q ss_conf 8--99974 Q gi|254780392|r 317 P--GSSAQ 322 (494) Q Consensus 317 ~--~~~a~ 322 (494) - ++..| T Consensus 150 g~~g~~~~ 157 (198) T 1q7l_A 150 GGHQGMEL 157 (198) T ss_dssp TSTTTHHH T ss_pred CCHHHHHH T ss_conf 73747999 No 35 >>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A (A:) Probab=60.88 E-value=2.1 Score=22.48 Aligned_cols=33 Identities=15% Similarity=0.529 Sum_probs=27.0 Q ss_pred CEEEEEEECCCCCCCCCCCHHHHHCCCCCCEEE Q ss_conf 289986410266899974707763024895888 Q gi|254780392|r 305 NAIGVLALVENMPGSSAQRPGDIVRSMSGQTIE 337 (494) Q Consensus 305 ~v~~~~~~~EN~~~~~a~~pgdvi~~~~G~tve 337 (494) +=+.+....+|+|...-.||||+|.+.||+.|+ T Consensus 7 ~gv~V~~V~~~spA~~gl~~GD~Il~ing~~v~ 39 (100) T 3i18_A 7 DGVYVXSVKDDVPAADVLHAGDLITEIDGNAFK 39 (100) T ss_dssp CCEEEEEECTTSGGGGTCCTTCEEEEETTBCCS T ss_pred CCEEEEEECCCCHHHHHCCCCCEEEEECCCCCC T ss_conf 809999989999689717779999994883379 No 36 >>3gux_A Putative Zn-dependent exopeptidase; YP_001298628.1, structural genomics, joint center for structural genomics, JCSG; 1.80A {Bacteroides vulgatus atcc 8482} (A:) Probab=55.92 E-value=13 Score=16.84 Aligned_cols=124 Identities=14% Similarity=0.151 Sum_probs=68.6 Q ss_pred HHHHHHHCCCCCEE-ECH--HHHHHHHHH-HHCCCCCHHHHCCCC----CCHHHHHHHHHHHCCCCCCCEEEEEECCCCC Q ss_conf 99864202125403-029--999999998-611332100001110----0013458988742025778506886205788 Q gi|254780392|r 178 VNLARDIINEPANV-LGT--DEFCKQVRK-LESLGVAVEILDKEA----MHKLGMNALLAVAQGSSRPPYLAVMKWEGGD 249 (494) Q Consensus 178 v~lARDLvN~PaN~-ltP--~~lA~~a~~-l~~~gl~v~Vld~~~----L~klGMg~llaVgqGS~~~Prli~l~Y~g~~ 249 (494) +.+.++|++.|+-. .++ ...++..++ |++.|+++++..-.. ....+.+.+++.=.|+..|+-++.-+| T Consensus 30 ~~~l~~l~~i~~~~~~s~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~nii~~~~g~~~~~i~l~aH~---- 105 (314) T 3gux_A 30 YQYIQVQADFGPRVPNTQAHKECGEYLAGQLEKFGAKVYNQYADLIAYDGTILKSRNIIGAYKPESKKRILLCAHW---- 105 (314) T ss_dssp HHHHHHHHTTCCCCTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEECTTSCEEEEEEEEEEESTTCSSEEEEEEEC---- T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCEEEEEEEEEECCCCCCCCEEEEEEE---- T ss_conf 9999998556993999999999999999999987996899966602677641467777775057898766999860---- Q ss_pred CCCCCEEEEECCEEECCCCCCCC---------CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC--CCC Q ss_conf 65651266302112006631003---------3332002322112356899999999870878728998641026--689 Q gi|254780392|r 250 SEEQPLAFIGKGVVFDTGGISIK---------PSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVEN--MPG 318 (494) Q Consensus 250 ~~~~piaLVGKGvTFDtGGislK---------p~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN--~~~ 318 (494) |+=...-+ ++.+-.+ |.+|.|+.+.+++.+.+.+++.+|+.+.-..|- ..+ T Consensus 106 ---------------D~vp~~~~~~~~~~~~~~g~Ga~D---~~~g~a~~l~~~~~l~~~~~~~~i~~~~~~~EE~g~~G 167 (314) T 3gux_A 106 ---------------DSRPYADNDPDPKNHHTPILGVND---GASGVGVLLEIARQIQKEQPALGIDIVFFDSEDYGIPE 167 (314) T ss_dssp ---------------CCCC-----------------------CHHHHHHHHHHHHHHHHSCCSSEEEEEEECSCCC---- T ss_pred ---------------CCCCCCCCCCCCCCCCCCCCCEEC---CCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC T ss_conf ---------------577668877653446763166026---77541999999998622366664289875521126444 Q ss_pred CCCCC Q ss_conf 99747 Q gi|254780392|r 319 SSAQR 323 (494) Q Consensus 319 ~~a~~ 323 (494) +.+|. T Consensus 168 ~~~~~ 172 (314) T 3gux_A 168 FYDGK 172 (314) T ss_dssp ----- T ss_pred CCCCC T ss_conf 43345 No 37 >>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} (A:) Probab=54.34 E-value=4 Score=20.40 Aligned_cols=32 Identities=22% Similarity=0.420 Sum_probs=27.2 Q ss_pred EEEEEECCCCCCCCCCCHHHHHCCCCCCEEEE Q ss_conf 99864102668999747077630248958886 Q gi|254780392|r 307 IGVLALVENMPGSSAQRPGDIVRSMSGQTIEV 338 (494) Q Consensus 307 ~~~~~~~EN~~~~~a~~pgdvi~~~~G~tvei 338 (494) +-|.-..+|.|-....+|||+|.+-||+.|.= T Consensus 27 ~~V~~v~~gspA~agL~~GD~I~~ing~~v~~ 58 (125) T 2hga_A 27 VQIDSVVPGSPASKVLTPGLVIESINGMPTSN 58 (125) T ss_dssp EEEEEECSSSGGGGTSCTTCEEEEETTEECSS T ss_pred EEEEEECCCCHHHHHCCCCCEEEEECCEECCC T ss_conf 89989899996997365688999989988389 No 38 >>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} (A:263-448) Probab=52.29 E-value=4.5 Score=20.07 Aligned_cols=41 Identities=22% Similarity=0.364 Sum_probs=29.5 Q ss_pred HHCCCCCC-EEEEEEECCCCCCCCC-CCHHHHHCCCCCCEEEE Q ss_conf 87087872-8998641026689997-47077630248958886 Q gi|254780392|r 298 AERKAKIN-AIGVLALVENMPGSSA-QRPGDIVRSMSGQTIEV 338 (494) Q Consensus 298 a~l~~~v~-v~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tvei 338 (494) ..++++.. =+.+....+|.|-.+| .||||+|++-||+.|.= T Consensus 16 ~~~g~~~~~gv~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~ 58 (186) T 1ky9_A 16 KAXKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISS 58 (186) T ss_dssp HTSCCTTCCSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCCS T ss_pred HHCCCCCCCCCEEEEECCCCCHHHCCCCCCCEEEECCCCCCCC T ss_conf 3202457888368898888865553886872999769811599 No 39 >>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structural genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens} (A:1-210,A:429-485) Probab=51.71 E-value=15 Score=16.39 Aligned_cols=135 Identities=12% Similarity=0.059 Sum_probs=69.6 Q ss_pred HHHHHHHHHHCCCCCEEEC--HH------HHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEC Q ss_conf 9999986420212540302--99------99999998-611332100001110001345898874202577850688620 Q gi|254780392|r 175 VKGVNLARDIINEPANVLG--TD------EFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKW 245 (494) Q Consensus 175 aegv~lARDLvN~PaN~lt--P~------~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y 245 (494) .+.+..-++|++.|.--.. |+ ..++...+ |++.|++++.++....... +.... ..+-.|.-++ T Consensus 25 ~~~~~~l~~lv~ipSvS~~~~~~~~~~~~~~a~~l~~~l~~lG~~~~~~~~~~~~~~-------~~~~~-~~~~~v~a~~ 96 (267) T 3dlj_A 25 DEFVQTLKEWVAIESDSVQPVPRFRQELFRMMAVAADTLQRLGARVASVDMGPQQLP-------DGQSL-PIPPVILAEL 96 (267) T ss_dssp HHHHHHHHHHHTSCCBSSSCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCEEEC---------CCEE-ECCCEEEEEE T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC-------CCCCC-CCCCEEEEEE T ss_conf 999999999957888899986532389999999999999976995999815665456-------67667-8885799996 Q ss_pred CCCCCCCCCEEEEECCEE----------ECCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHC--CCCCCEEEEEEE Q ss_conf 578865651266302112----------0066310033-332002322112356899999999870--878728998641 Q gi|254780392|r 246 EGGDSEEQPLAFIGKGVV----------FDTGGISIKP-SHGMEEMKGDLGGAAAVTGLLHVLAER--KAKINAIGVLAL 312 (494) Q Consensus 246 ~g~~~~~~piaLVGKGvT----------FDtGGislKp-~~~M~~Mk~DM~GaAav~g~~~aia~l--~~~v~v~~~~~~ 312 (494) .+. +.+++|.+.|--=| .|.=-...+- .-+-..---|.+|.++.+.+++++.+. .+|+||+.++-- T Consensus 97 ~~~-~~~~til~~~H~Dvvp~~~~~~w~~~pf~~~~~d~~l~grGa~Ddkggv~~~l~a~~~l~~~~~~l~~~I~~~~~~ 175 (267) T 3dlj_A 97 GSD-PTKGTVCFYGHLDVQPADRGDGWLTDPYVLTEVDGKLYGRGATDNKGPVLAWINAVSAFRALEQDLPVNIKFIIEG 175 (267) T ss_dssp CCC-TTSCEEEEEEECCBCCCCGGGTCSSCTTSCEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTCCCSSEEEEEEES T ss_pred CCC-CCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCC T ss_conf 789-9888799981356258887434467876037789989702402466208999899998775421478642540244 Q ss_pred CCCCCC Q ss_conf 026689 Q gi|254780392|r 313 VENMPG 318 (494) Q Consensus 313 ~EN~~~ 318 (494) .|-.=+ T Consensus 176 ~EE~Gs 181 (267) T 3dlj_A 176 MEEAGS 181 (267) T ss_dssp CGGGTT T ss_pred CCCHHH T ss_conf 310255 No 40 >>2joa_A Serine protease HTRA1; PDZ, beta-sandwich, cyclically-permuted, protein binding; NMR {Homo sapiens} (A:) Probab=50.50 E-value=1.9 Score=22.64 Aligned_cols=36 Identities=17% Similarity=0.441 Sum_probs=28.4 Q ss_pred CCCCEEEEEEECCCCCCCCC-CCHHHHHCCCCCCEEE Q ss_conf 78728998641026689997-4707763024895888 Q gi|254780392|r 302 AKINAIGVLALVENMPGSSA-QRPGDIVRSMSGQTIE 337 (494) Q Consensus 302 ~~v~v~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tve 337 (494) ..-+=+.+....+|+|..+| .+|||+|++.||+.|+ T Consensus 32 ~~~~gv~V~~v~~~spA~~aGL~~GD~Iv~ing~~i~ 68 (105) T 2joa_A 32 DVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVV 68 (105) T ss_dssp SCCCSEEEEEECSSSHHHHHTCCTTCEECBCSSCBCC T ss_pred CCCCCEEEEEECCCCHHHHCCCCCCEEEEEECCEECC T ss_conf 6888679999888976898299998099999999978 No 41 >>3c3d_A 2-phospho-L-lactate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FO1; 2.50A {Methanosarcina mazei GO1} PDB: 2ffe_A* 3c3e_A* 3cgw_A (A:) Probab=49.40 E-value=8.7 Score=18.05 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=17.5 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEECH Q ss_conf 9999999999999864202125403029 Q gi|254780392|r 167 VVADIQSVVKGVNLARDIINEPANVLGT 194 (494) Q Consensus 167 ~i~~~~aiaegv~lARDLvN~PaN~ltP 194 (494) .+..+..+.+++.+.+++.+-+++++.. T Consensus 102 ~L~a~~~l~~ai~~~~~~l~v~g~VlP~ 129 (311) T 3c3d_A 102 IIRDGASLTDSTVKLSSLFGIKANILPX 129 (311) T ss_dssp HHHTTCCHHHHHHHHHHHHTCCSEEEES T ss_pred HHHCCCCHHHHHHHHHHHHCCCCEEECC T ss_conf 8872799899999999986899539803 No 42 >>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A (A:20-84) Probab=49.28 E-value=3 Score=21.27 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=13.1 Q ss_pred CCHHHHHCCCCCCEEEE Q ss_conf 47077630248958886 Q gi|254780392|r 322 QRPGDIVRSMSGQTIEV 338 (494) Q Consensus 322 ~~pgdvi~~~~G~tvei 338 (494) .||||+|++.||+.|+= T Consensus 3 lk~GD~I~~ing~~v~~ 19 (65) T 2zpm_A 3 LQAGDRIVXVDGQPLTQ 19 (65) T ss_dssp CCTTCEEEEETTEECCC T ss_pred CCCCCEEEEECCEEEEC T ss_conf 99998999889989604 No 43 >>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} (A:) Probab=48.33 E-value=1.6 Score=23.29 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=23.1 Q ss_pred EEEEEECCCCCCCCC-CCHHHHHCCCCCCEEE Q ss_conf 998641026689997-4707763024895888 Q gi|254780392|r 307 IGVLALVENMPGSSA-QRPGDIVRSMSGQTIE 337 (494) Q Consensus 307 ~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tve 337 (494) +.+....+|.|...| .+|||+|++.||+.|. T Consensus 39 ~~V~~v~~~spA~~aGL~~GDvI~~ing~~v~ 70 (105) T 2i4s_A 39 YRVSPGKDPVLFESIGLQDGDXAVALNGLDLT 70 (105) T ss_dssp EEEEECSCTHHHHHHTCCTTCEEEEETTEETT T ss_pred EEEEECCCCCHHHHCCCCCCCEEEEECCEECC T ss_conf 99960799898998799989999998999948 No 44 >>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} (A:) Probab=47.51 E-value=8.2 Score=18.23 Aligned_cols=69 Identities=14% Similarity=-0.011 Sum_probs=43.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCC-CCEEEEEEECCCCCCCCC----------CCHHHHHCCCCCCEEEEECCCCCCEEE Q ss_conf 322112356899999999870878-728998641026689997----------470776302489588863478664036 Q gi|254780392|r 280 MKGDLGGAAAVTGLLHVLAERKAK-INAIGVLALVENMPGSSA----------QRPGDIVRSMSGQTIEVINTDAEGRLI 348 (494) Q Consensus 280 Mk~DM~GaAav~g~~~aia~l~~~-v~v~~~~~~~EN~~~~~a----------~~pgdvi~~~~G~tvei~nTDAEGRlv 348 (494) |+.-|-.+.+++.++-+.+..+.. ..+.......+-...... .=|+..|+...|.||++.|+|-..--+ T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~f~p~~i~v~~Gd~V~~~~~n~~~h~~ 82 (132) T 3c75_A 3 SAKTLRPAIAAIALFAIGATGAWAQDKITVTSEKPVAAADVPADAVVVGIEKMKYLTPEVTIKAGETVYWVNGEVMPHNV 82 (132) T ss_dssp ------------------------CCSEEESCSSCEEGGGSCTTSEEEEEETTEESSSEEEECTTCEEEEEECSSSCBCC T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEECCEEEECCCCEEEEEECCCCCEEE T ss_conf 15679999999999985045544466332267788655667876669985608897999998999999999899885018 No 45 >>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein structure initiative; NMR {Geobacillus thermodenitrificans ng80-2} (A:) Probab=47.19 E-value=4.6 Score=19.98 Aligned_cols=30 Identities=30% Similarity=0.583 Sum_probs=24.3 Q ss_pred EEEEECCCCCCCCCCCHHHHHCCCCCCEEE Q ss_conf 986410266899974707763024895888 Q gi|254780392|r 308 GVLALVENMPGSSAQRPGDIVRSMSGQTIE 337 (494) Q Consensus 308 ~~~~~~EN~~~~~a~~pgdvi~~~~G~tve 337 (494) -+.-..++.|.-.-.+|||+|++-||+.|. T Consensus 8 ~V~~V~~~spA~agL~~GD~I~~Ing~~v~ 37 (94) T 2kl1_A 8 YVMSVLPNMPAAGRLEAGDRIAAIDGQPIN 37 (94) T ss_dssp ECCCCCTTSTTBTTBCTTCEEEEETTBCCC T ss_pred EEEEECCCCHHHHCCCCCCEEEECCCCCCC T ss_conf 999899999479689999899765999379 No 46 >>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} (A:54-135) Probab=47.08 E-value=18 Score=15.90 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=36.3 Q ss_pred CCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCEEEEE Q ss_conf 87872899864102668999747077630248958886347866403652 Q gi|254780392|r 301 KAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILA 350 (494) Q Consensus 301 ~~~v~v~~~~~~~EN~~~~~a~~pgdvi~~~~G~tvei~nTDAEGRlvLa 350 (494) .+.-++.|++|..|=..+.....|.|+++-=.=.++.|...|.+||+-|. T Consensus 23 ~l~~~~~g~i~~sel~~~~~~~~~~~~~~~Gd~i~v~V~~vd~~~ri~LS 72 (82) T 2ba0_A 23 DIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDPKMKVTLT 72 (82) T ss_dssp ECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECTTCCEEEE T ss_pred ECCCCCCEEEEHHHCCCCCHHHCHHHHCCCCCEEEEEEEEECCCCCEEEE T ss_conf 80897337987676766101206354247999999999995689867996 No 47 >>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A (A:1-102) Probab=46.74 E-value=8.3 Score=18.21 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=28.5 Q ss_pred CCEEEEEEECCCCCCCCCCCHHHHHCCCCCCEEEE Q ss_conf 72899864102668999747077630248958886 Q gi|254780392|r 304 INAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEV 338 (494) Q Consensus 304 v~v~~~~~~~EN~~~~~a~~pgdvi~~~~G~tvei 338 (494) -.-+-+.-+.+|.|.....++||+|.+-||..|+= T Consensus 23 ~~~~~V~~v~~~spA~~~L~~GD~Il~Ing~~v~~ 57 (102) T 2qbw_A 23 DDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFIN 57 (102) T ss_dssp CCSEEEEEECTTSTTTTTCCTTCEEEEETTEECTT T ss_pred CCCEEEEEECCCCHHHHCCCCCCEEEEEECEEHHH T ss_conf 98889999688985784557799999993541111 No 48 >>2ytw_A Serine protease HTRA1; protein regulation, IGF-binding protein cleavage, peptidase, structural genomics, NPPSFA; NMR {Homo sapiens} (A:22-112) Probab=46.50 E-value=9 Score=17.95 Aligned_cols=37 Identities=16% Similarity=0.424 Sum_probs=28.9 Q ss_pred CCCCCEEEEEEECCCCCCCCC-CCHHHHHCCCCCCEEE Q ss_conf 878728998641026689997-4707763024895888 Q gi|254780392|r 301 KAKINAIGVLALVENMPGSSA-QRPGDIVRSMSGQTIE 337 (494) Q Consensus 301 ~~~v~v~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tve 337 (494) +..-+-+-+.-..+|.|...| .+|||+|.+.||+.|. T Consensus 23 ~~~~~g~~V~~V~~~spA~~aGL~~GD~Ii~ing~~v~ 60 (91) T 2ytw_A 23 PDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVV 60 (91) T ss_dssp CSCCSSEEEEECCSSSTTTTTTCCSSCEEEEETTEECC T ss_pred CCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECC T ss_conf 76887189999856971654499898199999999968 No 49 >>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} (A:) Probab=46.03 E-value=8.1 Score=18.27 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=26.5 Q ss_pred EEEEEECCCCCCCCC--CCHHHHHCCCCCCEEEEE Q ss_conf 998641026689997--470776302489588863 Q gi|254780392|r 307 IGVLALVENMPGSSA--QRPGDIVRSMSGQTIEVI 339 (494) Q Consensus 307 ~~~~~~~EN~~~~~a--~~pgdvi~~~~G~tvei~ 339 (494) +-|--..+|.|..+| .+|||+|.+-||+.|+=. T Consensus 52 i~V~~V~~gspA~~aG~l~~GD~Il~INg~~v~~~ 86 (117) T 2ehr_A 52 IFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNA 86 (117) T ss_dssp EEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTC T ss_pred EEEEEECCCCHHHHHCCCCCCCEEEEECCEECCCC T ss_conf 89999689997898289984779998999998899 No 50 >>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptide-binding module, hydrolase; 2.75A {Homo sapiens} (A:) Probab=44.68 E-value=2.7 Score=21.66 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=26.3 Q ss_pred CCCEEEEEEECCCCCCCCC-CCHHHHHCCCCCCEEEE Q ss_conf 8728998641026689997-47077630248958886 Q gi|254780392|r 303 KINAIGVLALVENMPGSSA-QRPGDIVRSMSGQTIEV 338 (494) Q Consensus 303 ~v~v~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tvei 338 (494) +-+=+-+.-..+|+|...| .+|||+|.+.||+.|.- T Consensus 33 ~~~~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~ 69 (113) T 2pzd_A 33 VQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN 69 (113) T ss_dssp CSSCEEEEEEBTTSHHHHHTCCTTCEEEEETTEECCS T ss_pred CCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCC T ss_conf 8885899997789626654999973999999999789 No 51 >>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} (A:) Probab=44.62 E-value=2.3 Score=22.19 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=26.2 Q ss_pred CEEEEEEECCCCCCCCC-CCHHHHHCCCCCCEEEE Q ss_conf 28998641026689997-47077630248958886 Q gi|254780392|r 305 NAIGVLALVENMPGSSA-QRPGDIVRSMSGQTIEV 338 (494) Q Consensus 305 ~v~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tvei 338 (494) +-+.+....+|+|...| .+|||+|.+-||++|+= T Consensus 34 ~gv~V~~V~~gspA~~aGl~~GD~Il~Vng~~v~~ 68 (97) T 2w4f_A 34 EGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQG 68 (97) T ss_dssp CSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTT T ss_pred CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCC T ss_conf 87899998789917867899999999899999899 No 52 >>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix K1} (A:96-123,A:226-389) Probab=44.03 E-value=19 Score=15.58 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=10.2 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 1235689999999987087872899864 Q gi|254780392|r 284 LGGAAAVTGLLHVLAERKAKINAIGVLA 311 (494) Q Consensus 284 M~GaAav~g~~~aia~l~~~v~v~~~~~ 311 (494) ||...+..|+-+.+-+.++.|.++++=| T Consensus 63 vGTgGTisGva~yLKe~nP~IkiV~vEP 90 (192) T 1wkv_A 63 LGTSGHMSAAAFYLQSVDPSIRAVLVQP 90 (192) T ss_dssp CSSSHHHHHHHHHHHHHCTTCEEEEEEE T ss_pred CCCCCEEEECHHHHHHHCCCCCEEEECC T ss_conf 3775312101234444287653367514 No 53 >>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} (A:) Probab=43.83 E-value=9.8 Score=17.70 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=29.5 Q ss_pred CCEEEEEEECCCCCCCCCCCHHHHHCCCCCCEEEEEC Q ss_conf 7289986410266899974707763024895888634 Q gi|254780392|r 304 INAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVIN 340 (494) Q Consensus 304 v~v~~~~~~~EN~~~~~a~~pgdvi~~~~G~tvei~n 340 (494) -.-+-+.-+.+|.|-..+.+|||+|.+-||..|+=.. T Consensus 34 ~~~~~V~~v~~gspA~~~L~~GD~Ii~INg~~v~~~~ 70 (95) T 1mfg_A 34 DDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFINIE 70 (95) T ss_dssp CCCEEEEEECTTSTTTTTCCTTCEEEEETTEECTTCB T ss_pred CCCEEEEEECCCCHHHHCCCCCCEEEEECCEECCCCC T ss_conf 9888999988999479617789999999999988996 No 54 >>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.00A {Bacteroides fragilis nctc 9343} (A:71-171) Probab=43.49 E-value=3.5 Score=20.88 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=27.1 Q ss_pred CCCCCCE-EEEEEECCCCCCCCC-CCHHHHHCCCCCCEEE Q ss_conf 0878728-998641026689997-4707763024895888 Q gi|254780392|r 300 RKAKINA-IGVLALVENMPGSSA-QRPGDIVRSMSGQTIE 337 (494) Q Consensus 300 l~~~v~v-~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tve 337 (494) ++.+.+- +-+....+|.|..+| .|+||+|++.||+.|. T Consensus 14 ~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~idG~~v~ 53 (101) T 3k50_A 14 LDNDTAYNALISYVVPGSPAEEAGLQRGHWIXXXNGDYIT 53 (101) T ss_dssp TTCSSCEEEEEEEECTTSHHHHTTCCTTCEEEEETTBCBC T ss_pred EECCCCCCEEEEEECCCCCHHHHCCCCCCEEEEECCEECC T ss_conf 8627777579999378999689089989999980888436 No 55 >>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} (A:) Probab=43.47 E-value=1.7 Score=23.00 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=25.9 Q ss_pred CEEEEEEECCCCCCCCC-CCHHHHHCCCCCCEEE Q ss_conf 28998641026689997-4707763024895888 Q gi|254780392|r 305 NAIGVLALVENMPGSSA-QRPGDIVRSMSGQTIE 337 (494) Q Consensus 305 ~v~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tve 337 (494) +-+-+.-..+|+|...| .+|||+|.+-||+.|+ T Consensus 19 ~g~~V~~v~~~spA~~aGl~~gD~I~~Ing~~v~ 52 (87) T 2i6v_A 19 LGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLT 52 (87) T ss_dssp EEEEEEECSCHHHHHHTTCCTTCEEEEETTEETT T ss_pred EEEEEECCCCCCHHHHCCCCCCCEEEEECCEEEE T ss_conf 8999952799898998799999999999999930 No 56 >>2fvg_A Endoglucanase; TM1049, structural genomics, joint center for structural genomics, JCSG, protein structure initiative PSI, hydrolase; 2.01A {Thermotoga maritima MSB8} (A:1-63,A:152-340) Probab=42.93 E-value=3.4 Score=20.94 Aligned_cols=104 Identities=13% Similarity=0.092 Sum_probs=56.4 Q ss_pred HHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEE Q ss_conf 864202125403029999999998-6113321000011100013458988742025778506886205788656512663 Q gi|254780392|r 180 LARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQPLAFI 258 (494) Q Consensus 180 lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~~piaLV 258 (494) |.|+|++.|+=-......++..++ |++.|+++++.. +|.+++ .+.+.+ +.++|.|. T Consensus 3 ll~~lv~~~s~s~~e~~~~~~~~~~~~~~g~~~~~~~--------~~~~~~--------------~~~~~~-~~~~i~~~ 59 (252) T 2fvg_A 3 YLKELSXXPGVSGDEGKVRDFIKSKIEGLVDNLYTDV--------LGNLIA--------------LKRGRD-SSKKLLVS 59 (252) T ss_dssp CHHHHHHSCCBTTCCHHHHHHHHHHHGGGSSEEEECT--------TSCEEE--------------EECCSE-EEEEEEEE T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEECC--------CCEEEE--------------EECCCC-CCCEEEEE T ss_conf 7999855999696789999999999997499899927--------853999--------------981789-99859999 Q ss_pred ECCEEECC-CCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC Q ss_conf 02112006-631003-333200232211235689999999987087872899864102 Q gi|254780392|r 259 GKGVVFDT-GGISIK-PSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVE 314 (494) Q Consensus 259 GKGvTFDt-GGislK-p~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~E 314 (494) |-- || ++.+=+ ...| =--|.+|.|+++-+++.+.+. |.+|+.+.-..| T Consensus 60 ~H~---Ds~~~~~~~~~~~G---a~Dn~sgva~lLe~ar~l~~~--~~~i~fv~~~~E 109 (252) T 2fvg_A 60 AHX---DSDYIEKNGRAVGK---AFDDRAGCSVLIDVLESGVSP--AYDTYFVFTVQE 109 (252) T ss_dssp EEC---CCCCEEETTEEEES---CHHHHHHHHHHHHHHHTCCCC--SEEEEEEEECCC T ss_pred CCC---CCCEEECCCCCCCC---CCCCHHHHHHHHHHHHHHHHC--CCCCCCCCCCCC T ss_conf 114---62112204642234---344304679999999973321--223211233111 No 57 >>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} (A:) Probab=42.52 E-value=7.2 Score=18.63 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=28.0 Q ss_pred EEEEEECCCCCCCCCCCHHHHHCCCCCCEEEEEC Q ss_conf 9986410266899974707763024895888634 Q gi|254780392|r 307 IGVLALVENMPGSSAQRPGDIVRSMSGQTIEVIN 340 (494) Q Consensus 307 ~~~~~~~EN~~~~~a~~pgdvi~~~~G~tvei~n 340 (494) +-+..+.+|.|...+.++||+|-+-||+.|+=.+ T Consensus 45 i~V~~v~~~s~A~~~L~~GD~Il~VNG~~v~~~~ 78 (103) T 1n7t_A 45 IFVTRVQPEGPASKLLQPGDKIIQANGYSFINIE 78 (103) T ss_dssp EECCCBSSSSTTSSSCCTTCEEEEETTEECSSCC T ss_pred EEEEEECCCCHHHHCCCCCCEEEEECCEECCCCC T ss_conf 8999978999368467899999999999988997 No 58 >>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein binding; 1.70A {Homo sapiens} (A:) Probab=42.24 E-value=3 Score=21.36 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=26.9 Q ss_pred CCCEEEEEEECCCCCCCCC-CCHHHHHCCCCCCEEE Q ss_conf 8728998641026689997-4707763024895888 Q gi|254780392|r 303 KINAIGVLALVENMPGSSA-QRPGDIVRSMSGQTIE 337 (494) Q Consensus 303 ~v~v~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tve 337 (494) +.+=+-+....+|+|..+| .+|||+|.+.||+.|. T Consensus 33 ~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~ 68 (112) T 2p3w_A 33 VSSGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLV 68 (112) T ss_dssp CCSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECC T ss_pred CCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECC T ss_conf 888689999789965776388898599999999978 No 59 >>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, IAP-binding, hydrolase; 2.00A {Homo sapiens} (A:218-325) Probab=41.37 E-value=3.1 Score=21.21 Aligned_cols=38 Identities=18% Similarity=0.368 Sum_probs=29.4 Q ss_pred CCCCCEEEEEEECCCCCCCCC-CCHHHHHCCCCCCEEEE Q ss_conf 878728998641026689997-47077630248958886 Q gi|254780392|r 301 KAKINAIGVLALVENMPGSSA-QRPGDIVRSMSGQTIEV 338 (494) Q Consensus 301 ~~~v~v~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tvei 338 (494) ..+-+=+.+....+++|..++ .++||+|++.||+.|.- T Consensus 35 ~~~~~g~~V~~V~~~spA~~aGL~~GD~Ii~ing~~i~~ 73 (108) T 1lcy_A 35 PDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN 73 (108) T ss_dssp CCCSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCS T ss_pred CCCCCEEEEEEECCCCHHHHCCCCCCCEEEEECCEECCC T ss_conf 767760599994899968987999899999989999389 No 60 >>2fgy_A Carboxysome shell polypeptide; beta class of carbonic anhydrase, lyase; 2.20A {Halothiobacillus neapolitanus} (A:1-175) Probab=39.25 E-value=15 Score=16.36 Aligned_cols=37 Identities=22% Similarity=0.385 Sum_probs=30.4 Q ss_pred HHHHHHHHHHH--CCCCCH--HHHCCCCCCHHHHHHHHHHH Q ss_conf 99999999861--133210--00011100013458988742 Q gi|254780392|r 195 DEFCKQVRKLE--SLGVAV--EILDKEAMHKLGMNALLAVA 231 (494) Q Consensus 195 ~~lA~~a~~l~--~~gl~v--~Vld~~~L~klGMg~llaVg 231 (494) ..|+++|+.++ +.|++. .||+..|..-+.|.+|.|-. T Consensus 118 ~DF~erAQ~laraeLGf~LP~~iLe~AWV~~LDMRaLfA~c 158 (175) T 2fgy_A 118 LDHVTRVQELAQSSLGHTLPEELLKDNWISGHNLKGIFGYA 158 (175) T ss_dssp SCCHHHHHHHHHHHHSSCCCGGGSCCBTTTBSCHHHHHHHH T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHH T ss_conf 45999999999997589883889886165755389999999 No 61 >>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} (D:) Probab=36.43 E-value=8 Score=18.30 Aligned_cols=33 Identities=21% Similarity=0.147 Sum_probs=25.6 Q ss_pred EEEEEEECCCCCCCCC-CCHHHHHCCCCCCEEEE Q ss_conf 8998641026689997-47077630248958886 Q gi|254780392|r 306 AIGVLALVENMPGSSA-QRPGDIVRSMSGQTIEV 338 (494) Q Consensus 306 v~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tvei 338 (494) -+.|....++.|..++ .+|||+|..-||+.|+= T Consensus 66 gi~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~ 99 (132) T 3l4f_D 66 LQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVK 99 (132) T ss_dssp SEEEEEECTTSGGGGGTCCTTCEEEEESSSBCTT T ss_pred CEEEEEECCCCHHHHCCCCCCCEEEEECCEECCC T ss_conf 8899997999989984999899999899999899 No 62 >>2v90_A PDZ domain-containing protein 3; alternative splicing, membrane, cytoplasm, protein-binding; 2.00A {Homo sapiens} (A:) Probab=34.89 E-value=4.7 Score=19.92 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=23.6 Q ss_pred EEEEEECCCCCCCCC-CCHHHHHCCCCCCEEEE Q ss_conf 998641026689997-47077630248958886 Q gi|254780392|r 307 IGVLALVENMPGSSA-QRPGDIVRSMSGQTIEV 338 (494) Q Consensus 307 ~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tvei 338 (494) +.+.-..++.|..+| .+|||+|.+-||+.|+= T Consensus 32 v~I~~v~~~spA~~aGL~~GD~Il~ing~~v~~ 64 (96) T 2v90_A 32 QFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEG 64 (96) T ss_dssp EEEEEECTTSHHHHTTCCTTEEEEEETTEECTT T ss_pred EEEEEECCCCHHHHCCCCCCCEEEEECCEECCC T ss_conf 899996799989985998899999991988699 No 63 >>1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI; 1.60A {Pyrococcus horikoshii} (A:1-71,A:166-353) Probab=34.46 E-value=27 Score=14.58 Aligned_cols=105 Identities=13% Similarity=0.142 Sum_probs=59.9 Q ss_pred HHHHHHHCCCCCEEECHH-HHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCE Q ss_conf 998642021254030299-99999998-6113321000011100013458988742025778506886205788656512 Q gi|254780392|r 178 VNLARDIINEPANVLGTD-EFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQPL 255 (494) Q Consensus 178 v~lARDLvN~PaN~ltP~-~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~~pi 255 (494) +.+.|+|++.|+---..+ ..++...+ +++.|+++++.... .++.++.| ..++| T Consensus 9 ~~~l~~l~~~~s~s~~~~~~~~~~~~~~~~~~g~~~~~~~~~----------------------~~~~~~~~---~~~~i 63 (259) T 1y0y_A 9 YELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLG----------------------NVIAHKKG---EGPKV 63 (259) T ss_dssp HHHHHHHHHSCCBTTCGGGTHHHHHHHHHGGGSSEEEECTTC----------------------CEEEEECC---SSCEE T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCC----------------------EEEEEECC---CCCEE T ss_conf 999999974999596416999999999999709969993784----------------------29999789---99759 Q ss_pred EEEECCEEECCCCC-CCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC Q ss_conf 66302112006631-0033----3320023221123568999999998708787289986410266 Q gi|254780392|r 256 AFIGKGVVFDTGGI-SIKP----SHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENM 316 (494) Q Consensus 256 aLVGKGvTFDtGGi-slKp----~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN~ 316 (494) +|.|- +||=.. .++. +.+.+ |.+|.|+++.+++.+.+.+ ..|+.+.-..|-. T Consensus 64 ~l~~H---~Dtp~~~~~~~g~i~g~g~D----d~~gva~~Le~ar~l~~~~--~~i~~~~~~~EE~ 120 (259) T 1y0y_A 64 MIAAH---MDQGRLERLGKHRFVSIAFD----DRIAVYTILEVAKQLKDAK--ADVYFVATVQEEV 120 (259) T ss_dssp EEEEE---CCBCCCEEETTTEEEETTHH----HHHHHHHHHHHHHHCCSCS--SEEEEEEESCCTT T ss_pred EEEEC---CCCEEEEEEEECCCCCCHHH----HHHHHHHHHHHHHHHCCCC--CCCCCCCCEEEEE T ss_conf 99966---88623465320111142444----2123677888766420246--7643113113465 No 64 >>2sns_A Thermonuclease precursor; hydrolase (phosphoric diester); HET: THP; 1.50A {Staphylococcus aureus} (A:) Probab=34.35 E-value=25 Score=14.82 Aligned_cols=27 Identities=15% Similarity=0.448 Sum_probs=13.3 Q ss_pred HHHHHCCCCCCEEEEECCCCCCEEEEE Q ss_conf 077630248958886347866403652 Q gi|254780392|r 324 PGDIVRSMSGQTIEVINTDAEGRLILA 350 (494) Q Consensus 324 pgdvi~~~~G~tvei~nTDAEGRlvLa 350 (494) ++.|+.-.+|-|+.|...+-+=|+-|+ T Consensus 11 ~~~V~~V~dGdt~~v~~~~~~~~vrL~ 37 (149) T 2sns_A 11 PATLIKAIDGDTVKLMYKGQPMTFRLL 37 (149) T ss_dssp EECEEEECSSSEEEECTTSSCEEEEES T ss_pred CEEEEEEECCCEEEEEECCCEEEEEEE T ss_conf 649999971989999979968899998 No 65 >>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=34.01 E-value=4.2 Score=20.30 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=24.2 Q ss_pred CEEEEEEECCCCCCCCC-CCHHHHHCCCCCCEEE Q ss_conf 28998641026689997-4707763024895888 Q gi|254780392|r 305 NAIGVLALVENMPGSSA-QRPGDIVRSMSGQTIE 337 (494) Q Consensus 305 ~v~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tve 337 (494) .-+.|-.+.+|.|...| .+|||+|..-||+.|+ T Consensus 46 ~gv~V~~v~~gspA~~aGl~~GD~Il~Ing~~v~ 79 (110) T 1x5q_A 46 EGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQ 79 (110) T ss_dssp CSEEEEEECTTSHHHHHTCCTTCEEEEETTEECT T ss_pred CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECC T ss_conf 8889999789995685467889999989999989 No 66 >>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} (A:) Probab=32.93 E-value=5.9 Score=19.26 Aligned_cols=31 Identities=19% Similarity=0.287 Sum_probs=16.2 Q ss_pred EEEEEECCCCCCCCC--CCHHHHHCCCCCCEEE Q ss_conf 998641026689997--4707763024895888 Q gi|254780392|r 307 IGVLALVENMPGSSA--QRPGDIVRSMSGQTIE 337 (494) Q Consensus 307 ~~~~~~~EN~~~~~a--~~pgdvi~~~~G~tve 337 (494) +.|.-+.+|+|...| .+|||+|.+-||+.|+ T Consensus 50 i~V~~v~~gspA~~aG~L~~GD~Il~INg~~v~ 82 (124) T 1wh1_A 50 IYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ 82 (124) T ss_dssp EEEEEECSSSHHHHTCCCCTTCEEEEESSCBCC T ss_pred EEEEEECCCCHHHHCCCCCCCCEEEEECCEECC T ss_conf 999998999959977696767799999999888 No 67 >>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus HB8} (A:76-105,A:218-285,A:345-418) Probab=31.48 E-value=30 Score=14.25 Aligned_cols=32 Identities=19% Similarity=0.119 Sum_probs=20.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 32211235689999999987087872899864 Q gi|254780392|r 280 MKGDLGGAAAVTGLLHVLAERKAKINAIGVLA 311 (494) Q Consensus 280 Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~ 311 (494) +-.--+++|++.++++...++...-+|++++| T Consensus 123 i~~G~SSGaaiaaA~kla~~~~~g~~VV~i~~ 154 (172) T 1x1q_A 123 IIPALESAHAIAYAAKVVPEXDKDQVVVINLS 154 (172) T ss_dssp CCBCHHHHHHHHHHHHHTTTSCTTCEEEEEEC T ss_pred CEECCHHHHHHHHHHHHHHHHCCCCEEEEEEC T ss_conf 97726389999999998677189897999968 No 68 >>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis} (A:) Probab=31.18 E-value=10 Score=17.51 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=21.8 Q ss_pred EEECCCCCCCCCCCHHHHHCCCCCCEEE Q ss_conf 6410266899974707763024895888 Q gi|254780392|r 310 LALVENMPGSSAQRPGDIVRSMSGQTIE 337 (494) Q Consensus 310 ~~~~EN~~~~~a~~pgdvi~~~~G~tve 337 (494) .-..+|+|...-.+|||+|.+-||+.|. T Consensus 6 ~~V~~~spA~agl~~GD~Il~ing~~i~ 33 (91) T 2kjp_A 6 SSVVENMPAKGKIEVGDKIISADGKNYQ 33 (91) T ss_dssp CCCCCSSCCSSCCCSSCEEEEETTBCCS T ss_pred EEECCCCHHHHCCCCCCEEEEECCCCCC T ss_conf 9889999478189878799996677189 No 69 >>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} (A:734-828) Probab=31.04 E-value=8.1 Score=18.26 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=17.4 Q ss_pred ECCCCCCCCC-CC-HHHHHCCCCCCEEE Q ss_conf 1026689997-47-07763024895888 Q gi|254780392|r 312 LVENMPGSSA-QR-PGDIVRSMSGQTIE 337 (494) Q Consensus 312 ~~EN~~~~~a-~~-pgdvi~~~~G~tve 337 (494) ..+|+|.-+| .+ |||+|.+-||+.|. T Consensus 30 v~~~sPA~~aGl~~~GD~Ii~ing~~v~ 57 (95) T 1k32_A 30 EGEKSPIFEYGIDPTGYLIEDIDGETVG 57 (95) T ss_dssp TTCBCGGGGGTCCCTTCEEEEETTEECB T ss_pred CCCCCHHHHCCCCCCCCEEEEECCEECC T ss_conf 5569907875898789899998999885 No 70 >>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} (A:) Probab=30.88 E-value=23 Score=15.04 Aligned_cols=33 Identities=12% Similarity=0.044 Sum_probs=27.3 Q ss_pred CCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCE Q ss_conf 266899974707763024895888634786640 Q gi|254780392|r 314 ENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGR 346 (494) Q Consensus 314 EN~~~~~a~~pgdvi~~~~G~tvei~nTDAEGR 346 (494) =++.+++..-|++.|+...|.+|++.++....- T Consensus 8 ~~~~~~~~~~~~p~i~v~~Gd~V~~~~~N~~~h 40 (106) T 2gim_A 8 LGSDKGLLVFEPAKLTIKPGDTVEFLNNKVPPH 40 (106) T ss_dssp ESCTTCCSSEESSEEEECTTCEEEEEECSSSCC T ss_pred EEECCCCEEEECCEEEECCCCEEEEEECCCCCC T ss_conf 973797368879999999999999998998974 No 71 >>3kre_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ATP-binding, ligase; 1.80A {Ehrlichia chaffeensis str} (A:105-240) Probab=30.78 E-value=15 Score=16.33 Aligned_cols=93 Identities=15% Similarity=0.212 Sum_probs=48.7 Q ss_pred HHHHCCCCCCCEEEEEECCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE Q ss_conf 87420257785068862057886565126630211200663100333320023221123568999999998708787289 Q gi|254780392|r 228 LAVAQGSSRPPYLAVMKWEGGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAI 307 (494) Q Consensus 228 laVgqGS~~~Prli~l~Y~g~~~~~~piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~ 307 (494) +++..|..-|+-++...||.....+++|- .-----.|.++ ..-++.|+ ...+-....+.++=.+++++ T Consensus 22 ~g~~eg~~l~~Pive~~~K~d~~~Dp~i~---~~~~~~~~~~~---~~e~~~i~------~~a~~i~~~l~~~~~~~gl~ 89 (136) T 3kre_A 22 FQIADGTPFKSPIIEFYYKNDELSDPMVS---EGHILSFQWLT---NQELEKIK------ILSLKINNILSELFFNVGIK 89 (136) T ss_dssp HTCCTTCEEEEEEEEEEECCTTTTCCEEC---HHHHHHTTSSC---HHHHHHHH------HHHHHHHHHHHHHHHHTTEE T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCC---HHHHHHHHHHH---HHHHHHHH------HHHHHHHHHHHHHHHHCCCE T ss_conf 03045630478877652235567545555---77898850013---78898999------99999999999999873948 Q ss_pred EEEEECCCCCCCCCCCHHHHHCCCCCCEEEEE--CCCCCCEEEEEHHHHH Q ss_conf 98641026689997470776302489588863--4786640365236788 Q gi|254780392|r 308 GVLALVENMPGSSAQRPGDIVRSMSGQTIEVI--NTDAEGRLILADALWY 355 (494) Q Consensus 308 ~~~~~~EN~~~~~a~~pgdvi~~~~G~tvei~--nTDAEGRlvLaD~l~y 355 (494) -+= ..+|-+ .+|++|++||+|-++= T Consensus 90 LvD-----------------------~K~EFG~~~dd~~g~iiL~DEItP 116 (136) T 3kre_A 90 LVD-----------------------FKLEFGKLHNDEQSDLFLADEISP 116 (136) T ss_dssp EEE-----------------------EEECEEEETTCTTCCCEECSCCST T ss_pred EEE-----------------------EEEEEEEECCCCCCEEEEEEEECC T ss_conf 871-----------------------114674312698886999995379 No 72 >>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesion; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A (A:) Probab=30.31 E-value=20 Score=15.56 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=26.6 Q ss_pred CCEEEEEEECCCCCCCCCCCHHHHHCCCCCCEEE Q ss_conf 7289986410266899974707763024895888 Q gi|254780392|r 304 INAIGVLALVENMPGSSAQRPGDIVRSMSGQTIE 337 (494) Q Consensus 304 v~v~~~~~~~EN~~~~~a~~pgdvi~~~~G~tve 337 (494) ...+.+-...++.+-....+|||+|.+-||++|+ T Consensus 38 ~~~~~V~~v~~~s~A~agl~~GD~Il~Ing~~v~ 71 (107) T 2h2b_A 38 ETSIVISDVLKGGPAEGQLQENDRVAMVNGVSMD 71 (107) T ss_dssp CCCEEEEEECTTSTTBTTBCTTCEEEEETTEECT T ss_pred CCCEEEEEECCCCCCCCCCCCCCEEEEECCEECC T ss_conf 8888999976698230678899999999999988 No 73 >>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} (A:) Probab=30.11 E-value=10 Score=17.62 Aligned_cols=30 Identities=20% Similarity=0.427 Sum_probs=22.4 Q ss_pred EEEEECCCCCCCCC--CCHHHHHCCCCCCEEE Q ss_conf 98641026689997--4707763024895888 Q gi|254780392|r 308 GVLALVENMPGSSA--QRPGDIVRSMSGQTIE 337 (494) Q Consensus 308 ~~~~~~EN~~~~~a--~~pgdvi~~~~G~tve 337 (494) .|....+|.|...| .+|||+|.+-||+.|+ T Consensus 46 ~V~~V~~~s~A~~aG~L~~GD~Il~INg~~v~ 77 (114) T 1uew_A 46 KIGRIIDGSPADRCAKLKVGDRILAVNGQSII 77 (114) T ss_dssp EEEEECTTCTTGGGSSCCTTCBEEEETTBCTT T ss_pred EEEEECCCCHHHHCCCCCCCCEEEEECCEECC T ss_conf 99998999989987999889798899198989 No 74 >>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A (A:) Probab=30.06 E-value=6.5 Score=18.94 Aligned_cols=36 Identities=31% Similarity=0.391 Sum_probs=26.0 Q ss_pred CEEEEEEECCCCCCCCC-CCHHHHHCCCCCCEEEEEC Q ss_conf 28998641026689997-4707763024895888634 Q gi|254780392|r 305 NAIGVLALVENMPGSSA-QRPGDIVRSMSGQTIEVIN 340 (494) Q Consensus 305 ~v~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tvei~n 340 (494) +-+-|-...+|.|..+| .||||+|.+-||+.|+=.. T Consensus 37 ~~~~V~~V~~~spA~~aGL~~GD~Ii~Ing~~v~~~~ 73 (96) T 2ego_A 37 MVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIR 73 (96) T ss_dssp EEEEEEEECTTCHHHHTTCCTTCEEEEETTEECTTCC T ss_pred CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCC T ss_conf 6889999899896898599769899999999989999 No 75 >>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} (A:) Probab=30.01 E-value=15 Score=16.43 Aligned_cols=31 Identities=16% Similarity=0.318 Sum_probs=21.1 Q ss_pred EEEEEECCCCCCCCC--CCHHHHHCCCCCCEEE Q ss_conf 998641026689997--4707763024895888 Q gi|254780392|r 307 IGVLALVENMPGSSA--QRPGDIVRSMSGQTIE 337 (494) Q Consensus 307 ~~~~~~~EN~~~~~a--~~pgdvi~~~~G~tve 337 (494) +.|.-+.++.|...+ .+|||+|.+-||..|+ T Consensus 39 ~~I~~v~~gspA~~~g~L~~GD~Il~Vng~~v~ 71 (101) T 2yt7_A 39 AVIANLLHGGPAERSGALSIGDRLTAINGTSLV 71 (101) T ss_dssp EEEEEECTTSTTGGGSSCCTTCEEEEESSCBCT T ss_pred EEEEEECCCCHHHHCCCCCCCCEEEEECCEECC T ss_conf 999981899979972999644684889999889 No 76 >>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=29.53 E-value=18 Score=15.81 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=19.5 Q ss_pred EEEEEECCCCCCCCC---CCHHHHHCCCCCCEEEE Q ss_conf 998641026689997---47077630248958886 Q gi|254780392|r 307 IGVLALVENMPGSSA---QRPGDIVRSMSGQTIEV 338 (494) Q Consensus 307 ~~~~~~~EN~~~~~a---~~pgdvi~~~~G~tvei 338 (494) +.|.-..++.+...+ .+|||.|.+-||+.|+= T Consensus 43 ~~V~~v~~~~~a~a~~~gL~~GD~Ii~Ing~~v~~ 77 (119) T 2cs5_A 43 VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAE 77 (119) T ss_dssp EEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTS T ss_pred EEEEEECCCCCEEECCCCCCCCCEEEEECCEECCC T ss_conf 89999889983020259877798998999947689 No 77 >>2vpu_A TET3, 354AA long hypothetical operon protein FRV; unknown function, protease, thermophilic, SELF-compartmentalising, hydrolase; 1.9A {Pyrococcus horikoshii} PDB: 2pe3_A (A:1-74,A:170-354) Probab=29.05 E-value=33 Score=13.97 Aligned_cols=173 Identities=16% Similarity=0.072 Sum_probs=88.9 Q ss_pred HHHHHHHCCCCCEEECHH-HHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCE Q ss_conf 998642021254030299-99999998-6113321000011100013458988742025778506886205788656512 Q gi|254780392|r 178 VNLARDIINEPANVLGTD-EFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQPL 255 (494) Q Consensus 178 v~lARDLvN~PaN~ltP~-~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~~pi 255 (494) +.+.|+|++.|+--..++ ..++..++ +++.|+++++.+ +|. ++.++.+ .+++| T Consensus 12 ~~~l~~lv~~~s~s~~~~~~~~~~~~~~~~~~g~~~~~~~--------~~n--------------~~~~~~~---~~~~i 66 (259) T 2vpu_A 12 WKLMQEIIEAPGVSGYEHLGIRDIVVDVLKEVADEVKVDK--------LGN--------------VIAHFKG---SSPRI 66 (259) T ss_dssp HHHHHHHHHSCCBTTCGGGTHHHHHHHHHHTTCSEEEECT--------TCC--------------EEEEECC---SSSEE T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECC--------CCC--------------EEEEECC---CCCEE T ss_conf 9999999749996965589999999999997299799927--------974--------------8999789---99548 Q ss_pred EEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCE Q ss_conf 66302112006631003333200232211235689999999987087872899864102668999747077630248958 Q gi|254780392|r 256 AFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQT 335 (494) Q Consensus 256 aLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN~~~~~a~~pgdvi~~~~G~t 335 (494) .|.|- +||-........-...---|-+|-|+++.+++.++ +++.+|+.+.--.|.-- T Consensus 67 ~~~~H---~D~~~~~~~~~~~~~Ga~Dn~sGva~lLe~ar~l~--~~~~~i~fv~~~~EE~G------------------ 123 (259) T 2vpu_A 67 MVAAH---MDKNFTRLNEHRFATPYLDDRICLYAMIEAARQLG--DHEADIYIVGSVQEEVG------------------ 123 (259) T ss_dssp EEECC---CCBCCEECSSSEEECTTHHHHHHHHHHHHHHHHCC--CCSSEEEEEECSCCTTT------------------ T ss_pred EEECC---CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH--HCCCCCEECCCCEEEEE------------------ T ss_conf 99815---77657884155433455556410667899999975--22343200122215764------------------ Q ss_pred EEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCC-------HHHHHHCCCCCEEEEE--CCHHHHHHHHHHHHHHCC Q ss_conf 8863478664036523678875207961355211120-------0235431776057870--898999999998998569 Q gi|254780392|r 336 IEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLT-------GAMVVSLGNIYAGLFA--NNDVLAEQLLSSGLSTGE 406 (494) Q Consensus 336 vei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ATLT-------Ga~~~alG~~~~g~~~--n~~~~~~~~~~a~~~~ge 406 (494) +..+..|+. .+.++....+.-.. +.....++....-.++ .+..+.+.+.+..+..+- T Consensus 124 -------------~~Gs~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~ 189 (259) T 2vpu_A 124 -------------LRGARVASY-AINPEVGIAMDVTFAKQPHDKGKIVPELGKGPVMDVGPNINPKLRAFADEVAKKYEI 189 (259) T ss_dssp -------------SHHHHHHHH-HHCCSEEEEEEEEECCCTTSTTCCCCCTTSCCEEEESTTSCHHHHHHHHHHHHHTTC T ss_pred -------------EECCCCCCC-CCCCCHHHCCCEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC T ss_conf -------------311322344-543120002332332542115555554336510135534574200124568998478 Q ss_pred CCCCCC Q ss_conf 717677 Q gi|254780392|r 407 LLWRMP 412 (494) Q Consensus 407 ~~w~lP 412 (494) +.+..+ T Consensus 190 ~~~~~~ 195 (259) T 2vpu_A 190 PLQVEP 195 (259) T ss_dssp CCEEEE T ss_pred CCCCEE T ss_conf 867168 No 78 >>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A (A:82-192) Probab=29.01 E-value=6.8 Score=18.81 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=21.9 Q ss_pred EEEEEECCCCCCCCC-CCHHHHHCCCCCCEEEEE Q ss_conf 998641026689997-470776302489588863 Q gi|254780392|r 307 IGVLALVENMPGSSA-QRPGDIVRSMSGQTIEVI 339 (494) Q Consensus 307 ~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tvei~ 339 (494) +.|....+|.|..+| .+|||+|.+-||+.|+=. T Consensus 31 v~V~~V~~~spA~~aGl~~GD~Il~Ing~~v~~~ 64 (111) T 3k1r_A 31 LFISHLIKGGQADSVGLQVGDEIVRINGYSISSC 64 (111) T ss_dssp EEEEEECTTSHHHHTTCCTTEEEEEETTEECTTC T ss_pred EEEEEECCCCHHHHCCCCCCCEEEEECCEECCCC T ss_conf 8999989999899829998999999999999999 No 79 >>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* (A:153-365) Probab=28.97 E-value=17 Score=16.04 Aligned_cols=20 Identities=35% Similarity=0.579 Sum_probs=14.8 Q ss_pred CCCHHHHHCC----CCCCEEEEEC Q ss_conf 7470776302----4895888634 Q gi|254780392|r 321 AQRPGDIVRS----MSGQTIEVIN 340 (494) Q Consensus 321 a~~pgdvi~~----~~G~tvei~n 340 (494) .|+-|||.|+ -+|+||+|.. T Consensus 124 ~f~~GD~~TTlI~T~~GktI~iqH 147 (213) T 2ixa_A 124 EWKQGDIVTTQIQCHNGETIVLTH 147 (213) T ss_dssp CCCSCSCEEEEEEETTSCEEEEEE T ss_pred CEEECCCEEEEEEECCCCEEEEEE T ss_conf 332135225788843884799999 No 80 >>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} (A:) Probab=28.80 E-value=12 Score=17.14 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=24.3 Q ss_pred EEEEEECCCCCCCCC-CCHHHHHCCCCCCEEEEE Q ss_conf 998641026689997-470776302489588863 Q gi|254780392|r 307 IGVLALVENMPGSSA-QRPGDIVRSMSGQTIEVI 339 (494) Q Consensus 307 ~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tvei~ 339 (494) +.+.-..++.|..+| .+|||+|.+-||+.|+=. T Consensus 31 ~~V~~V~~~spA~~aGl~~GD~I~~VNg~~v~~~ 64 (103) T 1v5l_A 31 LVITRITPGSKAAAANLCPGDVILAIDGFGTESM 64 (103) T ss_dssp EECSCBCTTSTTGGGTCCTTCBEEEETTEECSSC T ss_pred EEEEECCCCCHHHHCCCCCCCEEEEECCEEECCC T ss_conf 8999745899578579889999999999993898 No 81 >>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A (A:) Probab=28.43 E-value=7.4 Score=18.55 Aligned_cols=30 Identities=23% Similarity=0.520 Sum_probs=20.4 Q ss_pred EEEEECCCCCCCCC-CCHHHHHCCCCCCEEE Q ss_conf 98641026689997-4707763024895888 Q gi|254780392|r 308 GVLALVENMPGSSA-QRPGDIVRSMSGQTIE 337 (494) Q Consensus 308 ~~~~~~EN~~~~~a-~~pgdvi~~~~G~tve 337 (494) .|.-..+|.|...| .+|||+|..-||+.|. T Consensus 37 ~V~~V~~~spA~~aGl~~GD~I~~ing~~i~ 67 (99) T 3khf_A 37 VVWSVEDGSPAQEAGLRAGDLITHINGESVL 67 (99) T ss_dssp EEEEECTTSHHHHHTCCTTCEEEEETTEECT T ss_pred EEEEECCCCHHHHCCCCCCCEEEEECCEECC T ss_conf 9989899894684553799999999998989 No 82 >>2cyj_A Hypothetical protein PH1505; conserved hypothetical protein, structural genomics, NPPSFA; HET: OCS; 1.50A {Pyrococcus horikoshii OT3} (A:) Probab=28.40 E-value=30 Score=14.30 Aligned_cols=15 Identities=13% Similarity=-0.086 Sum_probs=10.1 Q ss_pred CCEEEEEECCCHHHC Q ss_conf 445999944881558 Q gi|254780392|r 68 WDRLVVAGIGDPRDA 82 (494) Q Consensus 68 ~~rViLVGLG~~~~~ 82 (494) ...++++|+|+...+ T Consensus 60 ~peiliiGtG~~~~~ 74 (118) T 2cyj_A 60 DFDVLLVGTGIYGML 74 (118) T ss_dssp CCSEEEEEECTTCCC T ss_pred CCCEEEEECCCCCCC T ss_conf 997899935886556 No 83 >>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:) Probab=28.28 E-value=6.8 Score=18.82 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=24.0 Q ss_pred EEEEEECCCCCCCCCCCHHHHHCCCCCCEEEE Q ss_conf 99864102668999747077630248958886 Q gi|254780392|r 307 IGVLALVENMPGSSAQRPGDIVRSMSGQTIEV 338 (494) Q Consensus 307 ~~~~~~~EN~~~~~a~~pgdvi~~~~G~tvei 338 (494) +.+.-..+|+|-..-.+|||+|..-||+.|+= T Consensus 48 ~~V~~V~~gspA~~gl~~GD~Il~InG~~v~~ 79 (117) T 2csj_A 48 IVISDVLPGGPADGLLQENDRVVMVNGTPMED 79 (117) T ss_dssp CEEEEECTTSSHHHHBCTTCEEEEESSCBCBT T ss_pred EEEEEECCCCCHHCCCCCCCEEEEECCEECCC T ss_conf 89989789980003899998998989974589 No 84 >>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} (A:) Probab=27.75 E-value=14 Score=16.58 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=19.7 Q ss_pred EEEECCCCCCCCC-CCHHHHHCCCCCCEEE Q ss_conf 8641026689997-4707763024895888 Q gi|254780392|r 309 VLALVENMPGSSA-QRPGDIVRSMSGQTIE 337 (494) Q Consensus 309 ~~~~~EN~~~~~a-~~pgdvi~~~~G~tve 337 (494) |.-..+|.|..+| .+|||+|.+-||+.|. T Consensus 42 V~~V~~gspA~~aGL~~GD~Iv~InG~~v~ 71 (114) T 2edz_A 42 IRVIEEGSPAEKAGLLDGDRVLRINGVFVD 71 (114) T ss_dssp EECCCTTCTTGGGTCCTTCEEEEESSSBCS T ss_pred EEEECCCCHHHHCCCCCCCEEEEECCCCCC T ss_conf 999468898998699878999998487134 No 85 >>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-fuoric acid, oxidoreductase; HET: FAD; 1.30A {Bacillus SP} (A:88-143,A:218-322) Probab=27.46 E-value=21 Score=15.40 Aligned_cols=120 Identities=15% Similarity=0.212 Sum_probs=59.6 Q ss_pred HHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHH------HHHCCCCCCCEEEEEECCCCCC-----CCCCEEE--EEC Q ss_conf 99999999986113321000011100013458988------7420257785068862057886-----5651266--302 Q gi|254780392|r 194 TDEFCKQVRKLESLGVAVEILDKEAMHKLGMNALL------AVAQGSSRPPYLAVMKWEGGDS-----EEQPLAF--IGK 260 (494) Q Consensus 194 P~~lA~~a~~l~~~gl~v~Vld~~~L~klGMg~ll------aVgqGS~~~Prli~l~Y~g~~~-----~~~piaL--VGK 260 (494) ++++...++.++++|+.+|+|+.+++.+. ++.|- ||=+-.-++=|.++--|+.... ..=|+-+ .+- T Consensus 11 ~~~~~~~~~~a~~~~i~~e~L~~~~~~~R-fP~f~~~~~~~~~~e~~L~v~r~~v~~f~~~~~~~~~~~~fPvfi~~~~~ 89 (161) T 2gf3_A 11 SAFVAETMEAAKEHSLTVDLLEGDEINKR-WPGITVPENYNAIFEPNLQPYRQVVGFFESDESKYSNDIDFPGFMVEVPN 89 (161) T ss_dssp CHHHHHHHHHHHHTTCCCEEEETHHHHHH-STTCCCCTTEEEEEETTCEEEEEEEEEECCCHHHHBGGGTCCEEEEEETT T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCHHHCCCCCCCCCCEECCC T ss_conf 56788877765304764222222222222-22234553322111122478986677640670331134577643033598 Q ss_pred CE--------------EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC----CCEEEEEEECCCCCC Q ss_conf 11--------------20066310033332002322112356899999999870878----728998641026689 Q gi|254780392|r 261 GV--------------VFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAK----INAIGVLALVENMPG 318 (494) Q Consensus 261 Gv--------------TFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~----v~v~~~~~~~EN~~~ 318 (494) |- -++.||--+.|. ....+......-...++...+.-+| .-+..-.|+--|-|+ T Consensus 90 ~~~YGfP~~~~~g~Ki~~~~~g~~~~pd----~~~~~~~~~~~~~~~l~~~i~~~~Pgl~~~p~~~~~C~YT~TPD 161 (161) T 2gf3_A 90 GIYYGFPSFGGCGLKLGYHTFGQKIDPD----TINREFGVYPEDESNLRAFLEEYMPGANGELKRGAVCMYTKTLD 161 (161) T ss_dssp EEEEEECBSTTCCEEEEESSCCEECCTT----TCCCCTTSSHHHHHHHHHHHHHHCGGGCSCEEEEEEEEEEECTT T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCC T ss_conf 4089620335545432134555665655----53223564278898876654114653344303578887246888 No 86 >>1gmu_A UREE; metallochaperone; 1.5A {Klebsiella aerogenes} (A:1-69) Probab=27.34 E-value=25 Score=14.84 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=20.9 Q ss_pred CCCCCCCCCCHHHHHCCCCCCEEEEE Q ss_conf 26689997470776302489588863 Q gi|254780392|r 314 ENMPGSSAQRPGDIVRSMSGQTIEVI 339 (494) Q Consensus 314 EN~~~~~a~~pgdvi~~~~G~tvei~ 339 (494) =+.|-+...++||++.+-+|..|+|. T Consensus 42 l~LpRg~~L~~GD~L~~edG~~v~V~ 67 (69) T 1gmu_A 42 LLLPRGLLLRGGDVLSNEEGTEFVQV 67 (69) T ss_dssp EECCSSCCCCTTCEEECTTSCCEEEE T ss_pred EECCCCCEECCCCEEEECCCCEEEEE T ss_conf 99899818389999995999859999 No 87 >>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION, transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A* 1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A* 1yhj_A* (A:) Probab=27.18 E-value=32 Score=14.09 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=5.8 Q ss_pred EEEEECCEEECCC Q ss_conf 2663021120066 Q gi|254780392|r 255 LAFIGKGVVFDTG 267 (494) Q Consensus 255 iaLVGKGvTFDtG 267 (494) +=-+|=|=+|-+| T Consensus 228 vDttGAGDaF~Ag 240 (312) T 2yxt_A 228 AVFVGTGDLFAAM 240 (312) T ss_dssp SCCSSHHHHHHHH T ss_pred CCCCCHHHHHHHH T ss_conf 9977777999999 No 88 >>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} (A:) Probab=27.15 E-value=24 Score=14.91 Aligned_cols=34 Identities=12% Similarity=0.155 Sum_probs=24.0 Q ss_pred EEEEEECCCCCCCCC-CCHHHHHCCCCCCEEEEEC Q ss_conf 998641026689997-4707763024895888634 Q gi|254780392|r 307 IGVLALVENMPGSSA-QRPGDIVRSMSGQTIEVIN 340 (494) Q Consensus 307 ~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tvei~n 340 (494) +.|.-+.+|.|...| .+|||+|.+-||+.|+-.+ T Consensus 43 i~V~~v~~~spA~~aGl~~GD~Il~VNg~~v~~~~ 77 (114) T 1x5n_A 43 IFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLD 77 (114) T ss_dssp EEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCC T ss_pred EEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCC T ss_conf 89999889997894698789895645997668998 No 89 >>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* (A:1-68,A:196-421) Probab=27.03 E-value=36 Score=13.73 Aligned_cols=153 Identities=14% Similarity=0.111 Sum_probs=85.7 Q ss_pred HHHHHHHHHCCCCCEEECHHH--HHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCC--- Q ss_conf 999986420212540302999--9999998-6113321000011100013458988742025778506886205788--- Q gi|254780392|r 176 KGVNLARDIINEPANVLGTDE--FCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGD--- 249 (494) Q Consensus 176 egv~lARDLvN~PaN~ltP~~--lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~--- 249 (494) +-+.+.++|+.-|.=--+|.+ .++...+ |++.|+++++..-+...-..- .......-.=|+-+.+|.. T Consensus 17 ~~~~~l~~l~~~ps~~g~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~------~~~~~~~~~NVi~~~~g~~~~~ 90 (294) T 2ek8_A 17 NMYNTIQFLSQAPRVAGSPEELKAVRYIEQQFKSYGYHVEVQPFQFEGYTAP------AEVKTLTSHNVIATKKPDANKK 90 (294) T ss_dssp HHHHHHHHHTTSCCCTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEECC------CEEEEEEEEEEEEEECCCSSTT T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECC------CCCCCCCCCEEEEEEECCCCCC T ss_conf 9999999981899879999999999999999996799179988998647527------2335531010578996167877 Q ss_pred CCCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC--CCCCCCCCHHHH Q ss_conf 656512663021120066310033332002322112356899999999870878728998641026--689997470776 Q gi|254780392|r 250 SEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVEN--MPGSSAQRPGDI 327 (494) Q Consensus 250 ~~~~piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN--~~~~~a~~pgdv 327 (494) ..++.|.|-+- +||=. ++.|-.+| .+|-|+++.+++.+.+.+++.+|+.+.-..|- +.++..| --+. T Consensus 91 ~~~~~Iii~aH---~D~v~----~g~Ga~D~---~sg~a~~Leaa~~l~~~~~~~~I~fv~~~~EE~g~~Gs~~~-~~~~ 159 (294) T 2ek8_A 91 NTNDIIIIGSH---HDSVE----KAPGANDD---ASGVAVTLELARVMSKLKTDTELRFITFGAEENGLIGSKKY-AASL 159 (294) T ss_dssp CCCCEEEEEEE---CCCCT----TCCCTTTT---HHHHHHHHHHHHHHTTSCCSSEEEEEEESSSTTTSHHHHHH-HTTC T ss_pred CCCCEEEEECC---CCCCC----CCCCCCCC---CCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHH-HHHH T ss_conf 88747999415---03205----57776686---42017999999986401677617999962540234424899-9876 Q ss_pred HCCCCCCEEEEECCCCCC Q ss_conf 302489588863478664 Q gi|254780392|r 328 VRSMSGQTIEVINTDAEG 345 (494) Q Consensus 328 i~~~~G~tvei~nTDAEG 345 (494) ........+.++|.|..| T Consensus 160 ~~~~~~~~~~~i~~d~~g 177 (294) T 2ek8_A 160 SEDEIKRTIGMFQLDMVG 177 (294) T ss_dssp CHHHHHHEEEEEEECSCC T ss_pred HHHHHHCEEEEECCCCCC T ss_conf 553131188751243223 No 90 >>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} (A:) Probab=26.51 E-value=7.5 Score=18.51 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=23.5 Q ss_pred EEEEEECCCCCCCCC-CCHHHHHCCCCCCEEEEE Q ss_conf 998641026689997-470776302489588863 Q gi|254780392|r 307 IGVLALVENMPGSSA-QRPGDIVRSMSGQTIEVI 339 (494) Q Consensus 307 ~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tvei~ 339 (494) +-+.-..+|.|...| .+|||+|...||++|+=. T Consensus 29 ~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~ 62 (89) T 2q3g_A 29 LSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSL 62 (89) T ss_dssp EEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGC T ss_pred EEEEEECCCCHHHHCCCCCCCEEEEECCEECCCC T ss_conf 6999974898467568789999999999781899 No 91 >>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} (A:) Probab=26.16 E-value=8.6 Score=18.09 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=6.9 Q ss_pred CCHHHHHCCCCCCEE Q ss_conf 470776302489588 Q gi|254780392|r 322 QRPGDIVRSMSGQTI 336 (494) Q Consensus 322 ~~pgdvi~~~~G~tv 336 (494) .+|||+|.+-||+.| T Consensus 51 L~~GD~Il~Ing~~v 65 (128) T 2kjd_A 51 LRAQDRIVEVNGVCM 65 (128) T ss_dssp CCTTCEEEEETTEEC T ss_pred CCCCCEEEEECCEEE T ss_conf 999999999999993 No 92 >>3cyy_A Tight junction protein ZO-1; protein-ligand complex, alternative splicing, cell junction, membrane, phosphoprotein, polymorphism; 2.40A {Homo sapiens} (A:) Probab=25.80 E-value=8.7 Score=18.04 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=19.7 Q ss_pred EEEEECCCCCCCCC--CCHHHHHCCCCCCEEE Q ss_conf 98641026689997--4707763024895888 Q gi|254780392|r 308 GVLALVENMPGSSA--QRPGDIVRSMSGQTIE 337 (494) Q Consensus 308 ~~~~~~EN~~~~~a--~~pgdvi~~~~G~tve 337 (494) .|.-..++.|..+| .+|||+|.+-||+.|+ T Consensus 26 ~V~~V~~~spA~~aG~L~~GD~Ii~iNg~~v~ 57 (92) T 3cyy_A 26 FVKEISQDSLAARDGNIQEGDVVLKINGTVTE 57 (92) T ss_dssp EEEEECTTCHHHHSCCCCTTCEEEEETTEECT T ss_pred EEEEECCCCHHHHCCCCCCCCEEEEECCEECC T ss_conf 99998999989984999899999999999967 No 93 >>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} (A:) Probab=25.78 E-value=8.8 Score=18.01 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=18.7 Q ss_pred EEEEECCCCCCCC-CCCHHHHHCCCCCCEEE Q ss_conf 9864102668999-74707763024895888 Q gi|254780392|r 308 GVLALVENMPGSS-AQRPGDIVRSMSGQTIE 337 (494) Q Consensus 308 ~~~~~~EN~~~~~-a~~pgdvi~~~~G~tve 337 (494) .|.-..+|+|... -.+|||+|+.-||+.|. T Consensus 36 ~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~ 66 (98) T 2jxo_A 36 FIRSVDPDSPAEASGLRAQDRIVEVNGVCME 66 (98) T ss_dssp EEEEECTTSHHHHHTCCTTCEEEEETTEECT T ss_pred EEEEECCCCHHHHCCCCCCCEEEEECCEECC T ss_conf 9999989998998799999999999999989 No 94 >>1l1c_A Transcription antiterminator LICT; protein RNA complex, antiterminator complex, RNA hairpin, transcription/RNA complex; NMR {Bacillus subtilis} (A:) Probab=25.34 E-value=29 Score=14.33 Aligned_cols=13 Identities=31% Similarity=0.856 Sum_probs=9.8 Q ss_pred CCEEEEECCEEEC Q ss_conf 5126630211200 Q gi|254780392|r 253 QPLAFIGKGVVFD 265 (494) Q Consensus 253 ~piaLVGKGvTFD 265 (494) +-+.++||||-|- T Consensus 20 ~E~Iv~GkGIGF~ 32 (55) T 1l1c_A 20 KELVVMGRGLAFQ 32 (55) T ss_dssp CEEEEECSSSSTT T ss_pred CEEEEEEECCEEC T ss_conf 9999997141347 No 95 >>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} (A:) Probab=24.78 E-value=7.6 Score=18.48 Aligned_cols=30 Identities=17% Similarity=0.198 Sum_probs=19.9 Q ss_pred EEEEEEECCCCCCCCCCCHHHHHCCCCCCEEEEECC Q ss_conf 899864102668999747077630248958886347 Q gi|254780392|r 306 AIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINT 341 (494) Q Consensus 306 v~~~~~~~EN~~~~~a~~pgdvi~~~~G~tvei~nT 341 (494) ...++.++||| ++||+|.+.+...+.+.|+ T Consensus 40 ~~~yIla~~g~------~~Gd~i~~~~~~~~~~Gn~ 69 (137) T 1rl2_A 40 EKRYIIAPKNL------KVGXEIXSGPDADIKIGNA 69 (137) T ss_dssp CEEEEECCTTC------CTTCEECBSTTCCSCTTCE T ss_pred CEEEEECCCCC------CCCEEEECCCCCCCCCCCC T ss_conf 78999616201------2421683276367473346 No 96 >>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A (A:17-80) Probab=24.62 E-value=15 Score=16.34 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=6.0 Q ss_pred CHHHHHCCCCCCEE Q ss_conf 70776302489588 Q gi|254780392|r 323 RPGDIVRSMSGQTI 336 (494) Q Consensus 323 ~pgdvi~~~~G~tv 336 (494) +|||.|++-+|+.| T Consensus 5 ~~GD~I~sVdg~~v 18 (64) T 3id1_A 5 APGTELKAVDGIET 18 (64) T ss_dssp CTTCEEEEETTEEC T ss_pred CCCCEEEEECCEEC T ss_conf 98889999999996 No 97 >>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} (A:) Probab=24.45 E-value=39 Score=13.41 Aligned_cols=142 Identities=13% Similarity=0.103 Sum_probs=75.3 Q ss_pred HHHHHHHCCCCC------EEECHHH--HHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCC-EEEEEECCC Q ss_conf 998642021254------0302999--9999998-61133210000111000134589887420257785-068862057 Q gi|254780392|r 178 VNLARDIINEPA------NVLGTDE--FCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPP-YLAVMKWEG 247 (494) Q Consensus 178 v~lARDLvN~Pa------N~ltP~~--lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~P-rli~l~Y~g 247 (494) +.+.++|+..|+ ...+|.+ .++..++ |++.|+++++.+-..- ..+ .=|+-++.| T Consensus 10 ~~~l~~lv~i~s~~~~~~~~~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~----------------~~~~~nvia~~~g 73 (284) T 1tkj_A 10 KAHLTQLSTIAANNGGNRAHGRPGYKASVDYVKAKLDAAGYTTTLQQFTSG----------------GATGYNLIANWPG 73 (284) T ss_dssp HHHHHHHHHHHHTTTTCCCTTSHHHHHHHHHHHHHHHHHTCEEEEEEEEET----------------TEEEEEEEEECSC T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECC----------------CCCCEEEEEEEEC T ss_conf 999999997526899898899999999999999999987991799741115----------------7654016999817 Q ss_pred CCCCCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECCCCCCCCCC-CH Q ss_conf 886565126630211200663100333320023221123568999999998708--787289986410266899974-70 Q gi|254780392|r 248 GDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERK--AKINAIGVLALVENMPGSSAQ-RP 324 (494) Q Consensus 248 ~~~~~~piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~--~~v~v~~~~~~~EN~~~~~a~-~p 324 (494) .. .++.|+|-+- +|+=. +.. .=-.|.+|-|+++.+++++.+.+ ++.+|+.+.-..|-..+..+. .- T Consensus 74 ~~-~~~~i~l~aH---~D~v~----~~~---ga~D~~~gva~~l~~~~~l~~~~~~~~~~i~~~~~~~EE~g~~~~~~~~ 142 (284) T 1tkj_A 74 GD-PNKVLMAGAH---LDSVS----SGA---GINDNGSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEELGLIGSKFYV 142 (284) T ss_dssp SE-EEEEEEEEEE---CCCCT----TSC---CTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTSHHHHHHH T ss_pred CC-CCCEEEEEEC---CCCCC----CCC---CCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHH T ss_conf 99-9956999812---02567----765---4578763247999999999860689875447762244410023319999 Q ss_pred HHHHCCCCCCEEEEECCCCCCE Q ss_conf 7763024895888634786640 Q gi|254780392|r 325 GDIVRSMSGQTIEVINTDAEGR 346 (494) Q Consensus 325 gdvi~~~~G~tvei~nTDAEGR 346 (494) ...........+-+.|.|-+|. T Consensus 143 ~~~~~~~~~~~~~~i~~d~~~~ 164 (284) T 1tkj_A 143 NNLPSADRSKLAGYLNFDMIGS 164 (284) T ss_dssp HHSCHHHHTTEEEEEEECCCCC T ss_pred HHHHCCCCCCEEEEECCCCCCC T ss_conf 8521143210677745531424 No 98 >>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} (A:1-145,A:408-458) Probab=24.27 E-value=40 Score=13.39 Aligned_cols=116 Identities=13% Similarity=0.086 Sum_probs=58.0 Q ss_pred CCCCCEEEEEECCCHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC Q ss_conf 88744599994488155899999999999998531697489941778999989999999999714777544443643332 Q gi|254780392|r 65 DCVWDRLVVAGIGDPRDANFSWLKAGGSIASYIEEDKNIEIFVDVPEYPITKAEIRDLVLGFMLKTYTFDQYKTKKRESS 144 (494) Q Consensus 65 g~~~~rViLVGLG~~~~~~~~~~ra~a~~~~~l~~~~~~~v~i~l~~~~~~~~~~~~~~eG~~L~~Y~Fd~yKskk~~~~ 144 (494) ...-.||+++|+|.- +..++..+...+...+.+.- ......+.++..........+.+....- T Consensus 20 ~~~~~kVlIIGaG~v----------g~~~~~~L~~~g~~~I~v~d----~~~~~a~~l~~~~~~~~~~~d~~~~~~l--- 82 (196) T 2axq_A 20 RHMGKNVLLLGSGFV----------AQPVIDTLAANDDINVTVAC----RTLANAQALAKPSGSKAISLDVTDDSAL--- 82 (196) T ss_dssp ---CEEEEEECCSTT----------HHHHHHHHHTSTTEEEEEEE----SSHHHHHHHHGGGTCEEEECCTTCHHHH--- T ss_pred CCCCCEEEEECCCHH----------HHHHHHHHHHCCCCEEEEEE----CCHHHHHHHHCCCCCCEEEEECCCHHHH--- T ss_conf 357881999898889----------99999999828993499996----9999999986026983699847998999--- Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHH Q ss_conf 321000133322457737899999999999999998642021254030299999999986 Q gi|254780392|r 145 SPRSKENISVTIVTEMIQQSSQVVADIQSVVKGVNLARDIINEPANVLGTDEFCKQVRKL 204 (494) Q Consensus 145 ~~~~~~~~~i~~~~~~~~~~~~~i~~~~aiaegv~lARDLvN~PaN~ltP~~lA~~a~~l 204 (494) ........+.+....... +....-+.+..-++++.+-++.-....+.+.+++- T Consensus 83 -~~~~~~~DiVI~~~P~~~------h~~va~~~i~~gk~vv~~s~~~~~~~~L~~~ak~~ 135 (196) T 2axq_A 83 -DKVLADNDVVISLIPYTF------HPNVVKSAIRTKTDVVTSSYISPALRELEPEIVKA 135 (196) T ss_dssp -HHHHHTSSEEEECSCGGG------HHHHHHHHHHHTCEEEECSCCCHHHHHHHHHHHHH T ss_pred -HHHHCCCCEEEECCCHHH------CHHHHHHHHHCCCCEECCHHCCCHHHHHHHHHHCC T ss_conf -998618999999988133------69999999974996750400010133320233047 No 99 >>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} (A:) Probab=24.19 E-value=39 Score=13.46 Aligned_cols=37 Identities=11% Similarity=0.070 Sum_probs=31.0 Q ss_pred CCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCEEEEE Q ss_conf 2668999747077630248958886347866403652 Q gi|254780392|r 314 ENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILA 350 (494) Q Consensus 314 EN~~~~~a~~pgdvi~~~~G~tvei~nTDAEGRlvLa 350 (494) -.+.+.+..=|++.|+...|.||++.|++-+---|-. T Consensus 7 v~~~~~~~~f~p~~i~v~~Gd~V~~~n~~~~~h~vh~ 43 (98) T 1pcs_A 7 MGSDSGALVFEPSTVTIKAGEEVKWVNNKLSPHNIVF 43 (98) T ss_dssp ESCTTSCSSEESSEEEECTTCEEEEEECSSCCEEEEE T ss_pred ECCCCCCEEEECCEEEECCCCEEEEEECCCCCCCEEE T ss_conf 6108972688789999999998999788988752477 No 100 >>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} (A:) Probab=23.96 E-value=40 Score=13.39 Aligned_cols=29 Identities=17% Similarity=0.092 Sum_probs=22.5 Q ss_pred CCCCCCCCHHHHHCCCCCCEEEEE--CCCCC Q ss_conf 689997470776302489588863--47866 Q gi|254780392|r 316 MPGSSAQRPGDIVRSMSGQTIEVI--NTDAE 344 (494) Q Consensus 316 ~~~~~a~~pgdvi~~~~G~tvei~--nTDAE 344 (494) |.++.+|-|+.++....|.+|||. |++.. T Consensus 9 ~~~~~~f~p~~~~~~~~G~~v~i~l~N~~~~ 39 (128) T 1nwp_A 9 STDQMSFNTKDIAIDKSCKTFTVELTHSGSL 39 (128) T ss_dssp ECTTSCBSCSEEEECTTCSEEEEEEEECSSC T ss_pred CCCCCCCCCCEEEEECCCCEEEEEEECCCCC T ss_conf 4884237265799946995899999868977 No 101 >>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} (A:) Probab=23.48 E-value=40 Score=13.39 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=31.3 Q ss_pred CCCCCCCCHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHH Q ss_conf 6899974707763024895888634786640365236788 Q gi|254780392|r 316 MPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWY 355 (494) Q Consensus 316 ~~~~~a~~pgdvi~~~~G~tvei~nTDAEGRlvLaD~l~y 355 (494) +.+.+-.=|++-|+...|.+|.+.|++.+.--+--..... T Consensus 8 ~~~~~~~f~~~~i~v~~Gd~V~~~n~~~~~h~~~~hg~~~ 47 (98) T 2plt_A 8 ADSGALEFVPKTLTIKSGETVNFVNNAGFPHNIVFDEDAI 47 (98) T ss_dssp CTTCCSSEESSEEEECTTCEEEEEECSSCCEEEEECGGGS T ss_pred ECCCCEEEECCEEEECCCCEEEEEECCCCCEEEEEECCCC T ss_conf 1797248858999987999899998998850189945862 No 102 >>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, structural genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} (A:) Probab=23.11 E-value=8.6 Score=18.09 Aligned_cols=33 Identities=21% Similarity=0.432 Sum_probs=23.2 Q ss_pred EEEEEEECCCCCCCCC--CCHHHHHCCCCCCEEEE Q ss_conf 8998641026689997--47077630248958886 Q gi|254780392|r 306 AIGVLALVENMPGSSA--QRPGDIVRSMSGQTIEV 338 (494) Q Consensus 306 v~~~~~~~EN~~~~~a--~~pgdvi~~~~G~tvei 338 (494) -+-|.-..+|.|..+| .+|||+|.+-||..|+= T Consensus 40 ~~~V~~V~~gspA~~aG~l~~GD~I~~Ing~~v~~ 74 (103) T 2fcf_A 40 GIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRD 74 (103) T ss_dssp -EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTT T ss_pred CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCC T ss_conf 98999989999689639984799999999999889 No 103 >>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} (A:) Probab=22.83 E-value=26 Score=14.71 Aligned_cols=32 Identities=13% Similarity=0.412 Sum_probs=23.0 Q ss_pred EEEEEEECCCCCCCCC--CCHHHHHCCCCCCEEE Q ss_conf 8998641026689997--4707763024895888 Q gi|254780392|r 306 AIGVLALVENMPGSSA--QRPGDIVRSMSGQTIE 337 (494) Q Consensus 306 v~~~~~~~EN~~~~~a--~~pgdvi~~~~G~tve 337 (494) -+.|..+.+|.|..+| .+|||.|..-||+.|+ T Consensus 58 ~i~V~~v~~gspA~~aG~L~~GD~Il~VNg~~v~ 91 (130) T 1i16_A 58 PLTINRIFKGAASEQSETVQPGDEILQLGGTAMQ 91 (130) T ss_dssp CCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGG T ss_pred CCCHHHHHCCCCCCCCCCCCCCHHHHHHCCHHHH T ss_conf 6236466423221345545871688860557653 No 104 >>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA binding, DNA topology; 3.00A {Escherichia coli} (A:1-13,A:189-316,A:449-463) Probab=22.63 E-value=26 Score=14.68 Aligned_cols=10 Identities=10% Similarity=0.172 Sum_probs=4.0 Q ss_pred CCCEEEEEEC Q ss_conf 7445999944 Q gi|254780392|r 67 VWDRLVVAGI 76 (494) Q Consensus 67 ~~~rViLVGL 76 (494) .-.+|++--+ T Consensus 47 e~~~IvItEI 56 (156) T 1zvu_A 47 EDGAVVISAL 56 (156) T ss_dssp ETTEEEEEEC T ss_pred CCCEEEEEEC T ss_conf 4446999944 No 105 >>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:) Probab=22.61 E-value=24 Score=14.97 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=15.4 Q ss_pred EEEECCCCCCCCC---CCHHHHHCCCCCCEEE Q ss_conf 8641026689997---4707763024895888 Q gi|254780392|r 309 VLALVENMPGSSA---QRPGDIVRSMSGQTIE 337 (494) Q Consensus 309 ~~~~~EN~~~~~a---~~pgdvi~~~~G~tve 337 (494) |.-+.+|.|..+. .+|||+|..-||+.|+ T Consensus 48 V~~v~~gs~A~~~~agl~~GD~Il~VNg~~v~ 79 (118) T 2yub_A 48 VKEVNRMHISPNNRNAIHPGDRILEINGTPVR 79 (118) T ss_dssp EEECCTTTSCTTHHHHCCTTCCEEEESSSBTT T ss_pred EEEECCCCCCHHHHCCCCCCCEEEEECCEEEE T ss_conf 98788897486875998788898788997720 No 106 >>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} (A:) Probab=22.24 E-value=11 Score=17.30 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=17.9 Q ss_pred EEEECCCCCCCCC-CCHHHHHCCCCCCEEE Q ss_conf 8641026689997-4707763024895888 Q gi|254780392|r 309 VLALVENMPGSSA-QRPGDIVRSMSGQTIE 337 (494) Q Consensus 309 ~~~~~EN~~~~~a-~~pgdvi~~~~G~tve 337 (494) +.-..+|.|...| .+|||+|.+-||+.|+ T Consensus 31 V~~V~~gs~A~~aGl~~GD~Il~Ing~~v~ 60 (91) T 1g9o_A 31 IRLVEPGSPAEKAGLLAGDRLVEVNGENVE 60 (91) T ss_dssp EEEECTTSHHHHTTCCTTCEEEEETTEECT T ss_pred EEEECCCCCHHHCCCCCCCEEEEECCEECC T ss_conf 999858984665288779899999999998 No 107 >>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} (A:551-675) Probab=21.74 E-value=44 Score=13.06 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=21.0 Q ss_pred CCCCEEEEEECCCHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCC Q ss_conf 8744599994488155899999999999998531697489941778 Q gi|254780392|r 66 CVWDRLVVAGIGDPRDANFSWLKAGGSIASYIEEDKNIEIFVDVPE 111 (494) Q Consensus 66 ~~~~rViLVGLG~~~~~~~~~~ra~a~~~~~l~~~~~~~v~i~l~~ 111 (494) ..-..+++++.|..-. .+-.++..|++.+..--.++++. T Consensus 10 ~~g~dv~iia~G~~~~-------~al~Aa~~L~~~gi~~~vi~~~~ 48 (125) T 1itz_A 10 GNKPDLIVMGTGSELE-------IAAKAADELRKEGKTVRVVSFVS 48 (125) T ss_dssp TTCCSEEEEECGGGHH-------HHHHHHHHHHHTTCCEEEEECSC T ss_pred CCCCCEEEEEEHHHHH-------HHHHHHHHHHHCCCCEEEEECCC T ss_conf 8999899998739999-------99999999996699879996798 No 108 >>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} (A:) Probab=21.56 E-value=12 Score=17.09 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=17.3 Q ss_pred EEEEECCCCCCCCC--CCHHHHHCCCCCCEEE Q ss_conf 98641026689997--4707763024895888 Q gi|254780392|r 308 GVLALVENMPGSSA--QRPGDIVRSMSGQTIE 337 (494) Q Consensus 308 ~~~~~~EN~~~~~a--~~pgdvi~~~~G~tve 337 (494) .|....++.|...+ .+|||+|.+-||+.|. T Consensus 32 ~V~~v~~gspA~~~G~L~~GD~I~~Vng~~v~ 63 (95) T 2vwr_A 32 FILDLLEGGLAAQDGRLSSNDRVLAINGHDLK 63 (95) T ss_dssp EEEEECTTSHHHHHCCCCTTCEEEEETTEECT T ss_pred EEEEECCCCHHHHHHHHCCCCEEEEECCEECC T ss_conf 99998799967843231069799999999988 No 109 >>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} (A:) Probab=21.19 E-value=12 Score=17.00 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=17.9 Q ss_pred EEEECCCCCCCCC-CCHHHHHCCCCCCEEE Q ss_conf 8641026689997-4707763024895888 Q gi|254780392|r 309 VLALVENMPGSSA-QRPGDIVRSMSGQTIE 337 (494) Q Consensus 309 ~~~~~EN~~~~~a-~~pgdvi~~~~G~tve 337 (494) |.-+.+|.|...| .+|||+|.+-||+.|. T Consensus 36 V~~v~~~spA~~~GL~~GD~Ii~vng~~v~ 65 (91) T 1m5z_A 36 VKNIRPAGPGDLGGLKPYDRLLQVNHVRTR 65 (91) T ss_dssp EEEECTTSHHHHHTCCTTCEEEEETTEECT T ss_pred EEEECCCCHHHHCCCCCCCEEEEECCEECC T ss_conf 999888993897889999999999999989 No 110 >>1jqg_A Carboxypeptidase A; Pro-protein, hydrolase; 2.50A {Helicoverpa armigera} (A:1-91) Probab=20.81 E-value=16 Score=16.18 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=35.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCC Q ss_conf 999999999999999864202125403029999999998-61133210000111 Q gi|254780392|r 165 SQVVADIQSVVKGVNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKE 217 (494) Q Consensus 165 ~~~i~~~~aiaegv~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~ 217 (494) .+.++..+.--+--++...-.|.|.++|-|....+..++ |++++++.+|+.++ T Consensus 37 ~~~L~~l~~~~~~dfw~~~~~~~~vdimV~p~~~~~f~~~L~~~~i~~~v~i~d 90 (91) T 1jqg_A 37 VKLVHDFENDLMLDVWSDAVPGRPGKVLVPKFKREIFENFLKQSGVQYKLEVEN 90 (91) T ss_dssp HHHHHHHHHHTTCEEEECCBTTBCEEEEECGGGHHHHHHHHHHHTCEEEEEESC T ss_pred HHHHHHHHHCCCCEECCCCCCCCEEEEEECHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 999999873327123168889981599979899899999999869868998315 No 111 >>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} (A:57-114) Probab=20.37 E-value=35 Score=13.79 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=15.4 Q ss_pred HHHHHCCCCCCEEEEECCCC Q ss_conf 07763024895888634786 Q gi|254780392|r 324 PGDIVRSMSGQTIEVINTDA 343 (494) Q Consensus 324 pgdvi~~~~G~tvei~nTDA 343 (494) |||.|++..|....|....- T Consensus 1 pGD~I~~~eGw~l~V~~V~E 20 (58) T 3dmq_A 1 PGDTITSHDGWQXQVEEVKE 20 (58) T ss_dssp TTCEEEBTTSCEEEEEEEEC T ss_pred CCCEEEECCCCEEEEEEECC T ss_conf 99989976883799987504 No 112 >>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} (A:) Probab=20.36 E-value=22 Score=15.21 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=22.6 Q ss_pred EEEEEECCCCCCC-CCCCHHHHHCCCCCCEEEEE Q ss_conf 9986410266899-97470776302489588863 Q gi|254780392|r 307 IGVLALVENMPGS-SAQRPGDIVRSMSGQTIEVI 339 (494) Q Consensus 307 ~~~~~~~EN~~~~-~a~~pgdvi~~~~G~tvei~ 339 (494) +.+.-..+|.|-. .-.+|||+|.+-||+.|.=. T Consensus 47 v~V~~V~~~spA~~aGl~~GD~Iv~inG~~v~~~ 80 (109) T 1q3o_A 47 QYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKV 80 (109) T ss_dssp EEEEEECTTSHHHHTTCCTTCEEEEETTEECTTC T ss_pred EEEEEECCCCHHHHCCCCCCCEEEEECCEECCCC T ss_conf 8999968999899839988999999999998999 No 113 >>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A (A:) Probab=20.23 E-value=43 Score=13.12 Aligned_cols=14 Identities=14% Similarity=0.413 Sum_probs=10.6 Q ss_pred CEEEEEECCCHHHC Q ss_conf 45999944881558 Q gi|254780392|r 69 DRLVVAGIGDPRDA 82 (494) Q Consensus 69 ~rViLVGLG~~~~~ 82 (494) ..|+++|.|+.... T Consensus 89 peiliiGTG~~~~~ 102 (150) T 3cpk_A 89 PEVLLVGTGRRQHL 102 (150) T ss_dssp CSEEEEECTTSCCC T ss_pred CCEEEECCCCCCCC T ss_conf 98999915986678 No 114 >>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} (A:) Probab=20.21 E-value=16 Score=16.19 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=17.4 Q ss_pred EEEEECCCCCCCCC--CCHHHHHCCCCCCEEE Q ss_conf 98641026689997--4707763024895888 Q gi|254780392|r 308 GVLALVENMPGSSA--QRPGDIVRSMSGQTIE 337 (494) Q Consensus 308 ~~~~~~EN~~~~~a--~~pgdvi~~~~G~tve 337 (494) .|.-+.+|.|...+ .+|||.|.+-||+.++ T Consensus 58 ~V~~v~~gspA~~~G~L~~GD~Il~INg~~v~ 89 (127) T 1wg6_A 58 FIKSIIHGGAAFKDGRLRMNDQLIAVNGETLL 89 (127) T ss_dssp EEEECCSSSSTHHHHTSCSCCBEEEETTEEST T ss_pred EEEEECCCCCHHHCCCCCCCCEEEEECCEECC T ss_conf 99997999861112899999999868998998 No 115 >>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries} (A:1-272,A:464-501) Probab=20.06 E-value=48 Score=12.82 Aligned_cols=60 Identities=17% Similarity=0.250 Sum_probs=38.2 Q ss_pred EECCHHHHHHHHHHH-HHHCCCCCCCCCCHHHHHHHCC-CCCCEECCC-CCCHHHHHHHHHHHHHCCCCCEEEEEEE Q ss_conf 708989999999989-9856971767768678886179-864170188-8746799999999872388676999400 Q gi|254780392|r 387 FANNDVLAEQLLSSG-LSTGELLWRMPMNEEYNKLIES-KFADMKNIG-GRGAGSIVAAQFLEKFVQDASWAHIDIA 460 (494) Q Consensus 387 ~~n~~~~~~~~~~a~-~~~ge~~w~lPl~~~y~~~~~s-~~AD~~n~~-~~~~g~~~aa~fl~~f~~~~~w~HlDia 460 (494) |+=+......+.+.. +...-++. =.|-. ++.-+|++| ||++|.- =++||+ +.+|+-++|- T Consensus 244 FTGS~~vG~~i~~~aa~~~lk~~~---------lELGG~p~gg~k~sg~g~~~~~~----~~~~~~-~~~~~~~~~~ 306 (310) T 1bxs_A 244 FTGSTEVGKLIKEAAGKSNLKRVS---------LELGGCPFGGFKMSGNGRELGEY----GFHEYT-EVKTVTIKIS 306 (310) T ss_dssp EESCHHHHHHHHHHHHHTTCCEEE---------EECCCSCBCCSGGGEESCBSHHH----HHHTTE-EEEEEEEECS T ss_pred EECCHHHHHHHHHHHHHCCCCEEE---------EECCCCCCCCCCCCCCCHHHHHH----HHHHHC-CEEEEEEECC T ss_conf 729769999999973113887499---------97687983774316077366899----999844-7179999768 No 116 >>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A (A:) Probab=20.04 E-value=13 Score=16.72 Aligned_cols=30 Identities=20% Similarity=0.321 Sum_probs=18.4 Q ss_pred EEEEECCCCCCCCC-CCHHHHHCCCCCCEEE Q ss_conf 98641026689997-4707763024895888 Q gi|254780392|r 308 GVLALVENMPGSSA-QRPGDIVRSMSGQTIE 337 (494) Q Consensus 308 ~~~~~~EN~~~~~a-~~pgdvi~~~~G~tve 337 (494) -+.-..++.|..+| .+|||+|.+-||..|. T Consensus 31 ~V~~V~~~spA~~aGl~~GD~I~~ing~~v~ 61 (90) T 2he4_A 31 YIRSVDPGSPAARSGLRAQDRLIEVNGQNVE 61 (90) T ss_dssp EEEEECTTSHHHHHTCCTTCEEEEETTEECT T ss_pred EEEEECCCCHHHHCCCCCCCEEEEECCEECC T ss_conf 9999748982786699889999999999989 Done!