Query         gi|254780392|ref|YP_003064805.1| leucyl aminopeptidase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 494
No_of_seqs    253 out of 1989
Neff          7.4 
Searched_HMMs 33803
Date          Wed Jun  1 13:01:19 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780392.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3kr4_A M17 leucyl aminopeptid 100.0       0       0  966.3  26.6  324  165-494     2-330 (335)
  2 >1gyt_A Cytosol aminopeptidase 100.0       0       0  959.4  28.7  328  161-493     3-334 (339)
  3 >3ij3_A Cytosol aminopeptidase 100.0       0       0  954.4  27.4  322  166-493     1-325 (325)
  4 >2hc9_A Leucine aminopeptidase 100.0       0       0  946.8  27.6  322  165-494     3-332 (337)
  5 >3kzw_A Cytosol aminopeptidase 100.0       0       0  918.1  24.6  300  191-491     1-303 (303)
  6 >1lam_A Leucine aminopeptidase 100.0       0       0  890.4  26.9  302  191-493     1-308 (308)
  7 >3kzw_A Cytosol aminopeptidase  99.9 7.7E-26 2.3E-30  201.9  16.4  182    2-190    24-212 (212)
  8 >1lam_A Leucine aminopeptidase  99.8   9E-22 2.7E-26  173.2   2.3  164   15-190     1-176 (176)
  9 >1gyt_A Cytosol aminopeptidase  99.8 3.5E-18   1E-22  147.9  14.5  147    1-147     1-154 (164)
 10 >3ij3_A Cytosol aminopeptidase  99.5 3.8E-14 1.1E-18  119.4   5.2  122   11-145    31-152 (157)
 11 >3kr4_A M17 leucyl aminopeptid  97.7  0.0044 1.3E-07   41.3  14.9  138    5-143    31-176 (193)
 12 >3isz_A Succinyl-diaminopimela  92.5    0.33 9.7E-06   28.1   5.6  186  176-408     4-196 (256)
 13 >3gb0_A Peptidase T; NP_980509  91.9    0.42 1.3E-05   27.3   5.6  180  176-412     7-199 (254)
 14 >2pok_A Peptidase, M20/M25/M40  91.8    0.99 2.9E-05   24.7  12.5  120  175-316    44-183 (256)
 15 >1fno_A Peptidase T; metallo p  90.8     1.2 3.6E-05   24.1   9.8  192  178-416     5-233 (295)
 16 >3kl9_A PEPA, glutamyl aminope  89.3     1.6 4.7E-05   23.3   8.3  109  178-315     6-120 (260)
 17 >1cg2_A Carboxypeptidase G2; m  88.6     1.8 5.3E-05   22.9   9.8  121  175-316    19-155 (234)
 18 >1vhe_A Aminopeptidase/glucana  88.1     1.7 4.9E-05   23.1   6.1  178  177-413     9-203 (279)
 19 >2qyv_A XAA-His dipeptidase; Y  87.8       2 5.9E-05   22.6   6.5  126  176-317    12-149 (215)
 20 >1ylo_A Hypothetical protein S  85.9     1.6 4.6E-05   23.3   4.9  174  178-410     6-193 (263)
 21 >3io1_A Aminobenzoyl-glutamate  85.2     2.5 7.5E-05   21.8   5.7  183  178-407    52-243 (325)
 22 >2rb7_A Peptidase, M20/M25/M40  85.1     2.7   8E-05   21.6   7.7  125  175-317     6-142 (218)
 23 >2gre_A Deblocking aminopeptid  84.5     2.9 8.5E-05   21.4   6.9  113  176-316     7-124 (251)
 24 >1ysj_A Protein YXEP; M20 fami  81.6     3.7 0.00011   20.7   5.9  128  175-320    32-163 (276)
 25 >1xmb_A IAA-amino acid hydrola  81.1     3.8 0.00011   20.6   5.7  180  175-406    28-220 (304)
 26 >1vho_A Endoglucanase; structu  80.0     3.7 0.00011   20.6   4.9  173  177-411     7-189 (259)
 27 >1rtq_A Bacterial leucyl amino  79.1     4.4 0.00013   20.1   8.7  125  175-316    20-153 (299)
 28 >3ct9_A Acetylornithine deacet  74.6     5.8 0.00017   19.3   9.4  127  175-320    11-143 (211)
 29 >2zog_A Cytosolic non-specific  70.4     7.2 0.00021   18.6   7.5  135  175-321    20-179 (236)
 30 >1y8t_A Hypothetical protein R  69.7     2.2 6.4E-05   22.3   1.5   33  305-337    17-50  (99)
 31 >1te0_A Protease DEGS; two dom  69.1     2.3 6.9E-05   22.1   1.6   59  300-369    19-79  (99)
 32 >2cf4_A Protein PH0519, phtet1  68.0       8 0.00024   18.3   5.7  108  178-316     5-115 (240)
 33 >1vgy_A Succinyl-diaminopimela  65.9     8.8 0.00026   18.0   8.2  126  176-316     7-139 (271)
 34 >1q7l_A Aminoacylase-1; cataly  63.8     9.6 0.00028   17.7  11.4  126  176-322    11-157 (198)
 35 >3i18_A LMO2051 protein; alpha  60.9     2.1 6.1E-05   22.5   0.0   33  305-337     7-39  (100)
 36 >3gux_A Putative Zn-dependent   55.9      13 0.00038   16.8   4.7  124  178-323    30-172 (314)
 37 >2hga_A Conserved protein MTH1  54.3       4 0.00012   20.4   0.6   32  307-338    27-58  (125)
 38 >1ky9_A Protease DO, DEGP, HTR  52.3     4.5 0.00013   20.1   0.6   41  298-338    16-58  (186)
 39 >3dlj_A Beta-Ala-His dipeptida  51.7      15 0.00044   16.4   9.6  135  175-318    25-181 (267)
 40 >2joa_A Serine protease HTRA1;  50.5     1.9 5.8E-05   22.6  -1.5   36  302-337    32-68  (105)
 41 >3c3d_A 2-phospho-L-lactate tr  49.4     8.7 0.00026   18.1   1.7   28  167-194   102-129 (311)
 42 >2zpm_A Regulator of sigma E p  49.3       3   9E-05   21.3  -0.7   17  322-338     3-19  (65)
 43 >2i4s_A General secretion path  48.3     1.6 4.7E-05   23.3  -2.2   31  307-337    39-70  (105)
 44 >3c75_A Amicyanin; copper prot  47.5     8.2 0.00024   18.2   1.3   69  280-348     3-82  (132)
 45 >2kl1_A YLBL protein; structur  47.2     4.6 0.00014   20.0   0.0   30  308-337     8-37  (94)
 46 >2ba0_A Archeal exosome RNA bi  47.1      18 0.00052   15.9   3.5   50  301-350    23-72  (82)
 47 >2qbw_A PDZ-fibronectin fusion  46.7     8.3 0.00024   18.2   1.2   35  304-338    23-57  (102)
 48 >2ytw_A Serine protease HTRA1;  46.5       9 0.00027   18.0   1.4   37  301-337    23-60  (91)
 49 >2ehr_A INAD-like protein; PDZ  46.0     8.1 0.00024   18.3   1.1   33  307-339    52-86  (117)
 50 >2pzd_A Serine protease HTRA2;  44.7     2.7 7.9E-05   21.7  -1.5   36  303-338    33-69  (113)
 51 >2w4f_A Protein LAP4; structur  44.6     2.3 6.7E-05   22.2  -1.9   34  305-338    34-68  (97)
 52 >1wkv_A Cysteine synthase; hom  44.0      19 0.00058   15.6   3.4   28  284-311    63-90  (192)
 53 >1mfg_A ERB-B2 interacting pro  43.8     9.8 0.00029   17.7   1.2   37  304-340    34-70  (95)
 54 >3k50_A Putative S41 protease;  43.5     3.5  0.0001   20.9  -1.1   38  300-337    14-53  (101)
 55 >2i6v_A General secretion path  43.5     1.7 5.1E-05   23.0  -2.7   33  305-337    19-52  (87)
 56 >2fvg_A Endoglucanase; TM1049,  42.9     3.4  0.0001   20.9  -1.2  104  180-314     3-109 (252)
 57 >1n7t_A 99-MER peptide of dens  42.5     7.2 0.00021   18.6   0.4   34  307-340    45-78  (103)
 58 >2p3w_A Probable serine protea  42.2       3 8.7E-05   21.4  -1.6   35  303-337    33-68  (112)
 59 >1lcy_A HTRA2 serine protease;  41.4     3.1 9.2E-05   21.2  -1.6   38  301-338    35-73  (108)
 60 >2fgy_A Carboxysome shell poly  39.2      15 0.00045   16.4   1.6   37  195-231   118-158 (175)
 61 >3l4f_D SH3 and multiple ankyr  36.4       8 0.00024   18.3  -0.1   33  306-338    66-99  (132)
 62 >2v90_A PDZ domain-containing   34.9     4.7 0.00014   19.9  -1.5   32  307-338    32-64  (96)
 63 >1y0y_A FRV operon protein FRV  34.5      27  0.0008   14.6   4.0  105  178-316     9-120 (259)
 64 >2sns_A Thermonuclease precurs  34.3      25 0.00074   14.8   2.1   27  324-350    11-37  (149)
 65 >1x5q_A LAP4 protein; PDZ doma  34.0     4.2 0.00012   20.3  -1.9   33  305-337    46-79  (110)
 66 >1wh1_A KIAA1095 protein; PDZ   32.9     5.9 0.00017   19.3  -1.3   31  307-337    50-82  (124)
 67 >1x1q_A Tryptophan synthase be  31.5      30 0.00089   14.2   2.7   32  280-311   123-154 (172)
 68 >2kjp_A Uncharacterized protei  31.2      10 0.00031   17.5  -0.3   28  310-337     6-33  (91)
 69 >1k32_A Tricorn protease; prot  31.0     8.1 0.00024   18.3  -0.8   26  312-337    30-57  (95)
 70 >2gim_A Plastocyanin; beta she  30.9      23 0.00069   15.0   1.5   33  314-346     8-40  (106)
 71 >3kre_A Phosphoribosylaminoimi  30.8      15 0.00045   16.3   0.5   93  228-355    22-116 (136)
 72 >2h2b_A Tight junction protein  30.3      20 0.00058   15.6   1.0   34  304-337    38-71  (107)
 73 >1uew_A Membrane associated gu  30.1      10  0.0003   17.6  -0.5   30  308-337    46-77  (114)
 74 >2ego_A General receptor for p  30.1     6.5 0.00019   18.9  -1.5   36  305-340    37-73  (96)
 75 >2yt7_A Amyloid beta A4 precur  30.0      15 0.00044   16.4   0.3   31  307-337    39-71  (101)
 76 >2cs5_A Tyrosine-protein phosp  29.5      18 0.00054   15.8   0.7   32  307-338    43-77  (119)
 77 >2vpu_A TET3, 354AA long hypot  29.0      33 0.00097   14.0   3.8  173  178-412    12-195 (259)
 78 >3k1r_A Harmonin; protein-prot  29.0     6.8  0.0002   18.8  -1.5   33  307-339    31-64  (111)
 79 >2ixa_A Alpha-N-acetylgalactos  29.0      17  0.0005   16.0   0.5   20  321-340   124-147 (213)
 80 >1v5l_A PDZ and LIM domain 3;   28.8      12 0.00035   17.1  -0.3   33  307-339    31-64  (103)
 81 >3khf_A Microtubule-associated  28.4     7.4 0.00022   18.6  -1.4   30  308-337    37-67  (99)
 82 >2cyj_A Hypothetical protein P  28.4      30 0.00087   14.3   1.7   15   68-82     60-74  (118)
 83 >2csj_A TJP2 protein; PDZ doma  28.3     6.8  0.0002   18.8  -1.6   32  307-338    48-79  (117)
 84 >2edz_A PDZ domain-containing   27.8      14 0.00042   16.6  -0.1   29  309-337    42-71  (114)
 85 >2gf3_A MSOX, monomeric sarcos  27.5      21 0.00061   15.4   0.7  120  194-318    11-161 (161)
 86 >1gmu_A UREE; metallochaperone  27.3      25 0.00073   14.8   1.1   26  314-339    42-67  (69)
 87 >2yxt_A Pyridoxal kinase; beta  27.2      32 0.00094   14.1   1.6   13  255-267   228-240 (312)
 88 >1x5n_A Harmonin; PDZ domain,   27.1      24 0.00072   14.9   1.0   34  307-340    43-77  (114)
 89 >2ek8_A Aminopeptidase; metall  27.0      36  0.0011   13.7   8.0  153  176-345    17-177 (294)
 90 >2q3g_A PDZ and LIM domain pro  26.5     7.5 0.00022   18.5  -1.7   33  307-339    29-62  (89)
 91 >2kjd_A Sodium/hydrogen exchan  26.2     8.6 0.00025   18.1  -1.4   15  322-336    51-65  (128)
 92 >3cyy_A Tight junction protein  25.8     8.7 0.00026   18.0  -1.4   30  308-337    26-57  (92)
 93 >2jxo_A Ezrin-radixin-moesin-b  25.8     8.8 0.00026   18.0  -1.4   30  308-337    36-66  (98)
 94 >1l1c_A Transcription antiterm  25.3      29 0.00087   14.3   1.2   13  253-265    20-32  (55)
 95 >1rl2_A Protein (ribosomal pro  24.8     7.6 0.00022   18.5  -1.9   30  306-341    40-69  (137)
 96 >3id1_A Regulator of sigma E p  24.6      15 0.00045   16.3  -0.4   14  323-336     5-18  (64)
 97 >1tkj_A Aminopeptidase, SGAP;   24.5      39  0.0012   13.4   2.7  142  178-346    10-164 (284)
 98 >2axq_A Saccharopine dehydroge  24.3      40  0.0012   13.4   4.5  116   65-204    20-135 (196)
 99 >1pcs_A Plastocyanin; electron  24.2      39  0.0012   13.5   1.6   37  314-350     7-43  (98)
100 >1nwp_A Azurin; electron trans  24.0      40  0.0012   13.4   1.6   29  316-344     9-39  (128)
101 >2plt_A Plastocyanin; electron  23.5      40  0.0012   13.4   1.6   40  316-355     8-47  (98)
102 >2fcf_A Multiple PDZ domain pr  23.1     8.6 0.00025   18.1  -1.9   33  306-338    40-74  (103)
103 >1i16_A Interleukin 16, LCF; c  22.8      26 0.00077   14.7   0.5   32  306-337    58-91  (130)
104 >1zvu_A Topoisomerase IV subun  22.6      26 0.00077   14.7   0.5   10   67-76     47-56  (156)
105 >2yub_A LIMK-2, LIM domain kin  22.6      24  0.0007   15.0   0.3   29  309-337    48-79  (118)
106 >1g9o_A NHE-RF; PDZ domain, co  22.2      11 0.00033   17.3  -1.5   29  309-337    31-60  (91)
107 >1itz_A Transketolase; calvin   21.7      44  0.0013   13.1   1.6   39   66-111    10-48  (125)
108 >2vwr_A Ligand of NUMB protein  21.6      12 0.00035   17.1  -1.4   30  308-337    32-63  (95)
109 >1m5z_A GRIP, AMPA receptor in  21.2      12 0.00036   17.0  -1.4   29  309-337    36-65  (91)
110 >1jqg_A Carboxypeptidase A; Pr  20.8      16 0.00047   16.2  -0.9   53  165-217    37-90  (91)
111 >3dmq_A RNA polymerase-associa  20.4      35   0.001   13.8   0.8   20  324-343     1-20  (58)
112 >1q3o_A Shank1; PDZ, GKAP, pep  20.4      22 0.00065   15.2  -0.3   33  307-339    47-80  (109)
113 >3cpk_A Uncharacterized protei  20.2      43  0.0013   13.1   1.2   14   69-82     89-102 (150)
114 >1wg6_A Hypothetical protein (  20.2      16 0.00047   16.2  -1.0   30  308-337    58-89  (127)
115 >1bxs_A Aldehyde dehydrogenase  20.1      48  0.0014   12.8   1.5   60  387-460   244-306 (310)
116 >2he4_A Na(+)/H(+) exchange re  20.0      13  0.0004   16.7  -1.4   30  308-337    31-61  (90)

No 1  
>>3kr4_A M17 leucyl aminopeptidase; protease, hydrolase; HET: BES 1PE; 2.00A {Plasmodium falciparum} PDB: 3kqz_A* 3kqx_A* 3kr5_A* (A:194-528)
Probab=100.00  E-value=0  Score=966.31  Aligned_cols=324  Identities=38%  Similarity=0.607  Sum_probs=314.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHH-HCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf             9999999999999998642021254030299999999986-113321000011100013458988742025778506886
Q gi|254780392|r  165 SQVVADIQSVVKGVNLARDIINEPANVLGTDEFCKQVRKL-ESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVM  243 (494)
Q Consensus       165 ~~~i~~~~aiaegv~lARDLvN~PaN~ltP~~lA~~a~~l-~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l  243 (494)
                      ++.+++++++++|+++||||+|+|||+|||++||++++++ +++|++|+|+++++|+++|||+|++|||||.+|||||+|
T Consensus         2 e~~~~~~~~~a~g~~lARdL~n~P~N~ltP~~~a~~a~~~~~~~gv~v~V~~~~~l~~~gmg~~laVg~GS~~~p~li~l   81 (335)
T 3kr4_A            2 KEEVEKARVYYFGTYYASQLIAAPSNYCNPVSLSNAAVELAQKLNLEYKILGVKELEELKMGAYLSVGKGSMYPNKFIHL   81 (335)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTCEEEEECHHHHHHTTCHHHHHHGGGCSSCCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCCCEEEEECCCCCCCEEEEE
T ss_conf             99999999999999999987268962149999999999999872987999639999867998468761478898727999


Q ss_pred             ECCCCCCCCCCEEEEECCEEECCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEEEEECCCCCCCC
Q ss_conf             20578865651266302112006631003--33320023221123568999999998708-7872899864102668999
Q gi|254780392|r  244 KWEGGDSEEQPLAFIGKGVVFDTGGISIK--PSHGMEEMKGDLGGAAAVTGLLHVLAERK-AKINAIGVLALVENMPGSS  320 (494)
Q Consensus       244 ~Y~g~~~~~~piaLVGKGvTFDtGGislK--p~~~M~~Mk~DM~GaAav~g~~~aia~l~-~~v~v~~~~~~~EN~~~~~  320 (494)
                      +|+|++++++||+||||||||||||||||  |+.+|++||+||||||+|+|+|+++++|+ +|+||++++|+||||||++
T Consensus        82 ~Y~g~~~~~~~i~LVGKGiTFDtGG~slK~~P~~~M~~Mk~DM~GAAaVlga~~aia~l~~l~vnv~a~l~~~EN~i~~~  161 (335)
T 3kr4_A           82 TYKSKGDVKKKIALVGKGITFDSGGYNLKAAPGSMIDLMKFDMSGCAAVLGCAYCVGTLKPENVEIHFLSAVCENMVSKN  161 (335)
T ss_dssp             EEECSSCCCEEEEEEEEEEEEECCTTSCSCSTTCCGGGGGGGGHHHHHHHHHHHHHHHHCCSSEEEEEEEEEEEECCSTT
T ss_pred             EECCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHCCCCC
T ss_conf             97136777886665566668765885356686104787650143489999999999984358813899733443067998


Q ss_pred             CCCHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEECCHHHHHHHHHH
Q ss_conf             74707763024895888634786640365236788752079613552111200235431776057870898999999998
Q gi|254780392|r  321 AQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSS  400 (494)
Q Consensus       321 a~~pgdvi~~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ATLTGa~~~alG~~~~g~~~n~~~~~~~~~~a  400 (494)
                      |||||||||+||||||||.||||||||||||+|+|| ++|+|+.|||+|||||||++|||++++|+|||||++++++++|
T Consensus       162 a~kPgDVi~s~nGkTVEI~NTDAEGRLvLADal~~a-~~~~p~~iiDiATLTGa~~~ALG~~~ag~~sn~~~l~~~l~~a  240 (335)
T 3kr4_A          162 SYRPGDIITASNGKTIEVGNTDAEGRLTLADALVYA-EKLGVDYIVDIATLTGAMLYSLGTSYAGVFGNNEELINKILQS  240 (335)
T ss_dssp             SCCTTCEEECTTSCEEECSCTTCCHHHHHHHHHHHH-HHTCCSEEEEEECCCTTHHHHTTTTCEEEEESCHHHHHHHHHH
T ss_pred             CCCCCCEEECCCCCEEEEECCCCCCEEEEEHHHHHH-HCCCCCCEEEEHHHHHHHHECCCCCEEEEEECCHHHHHHHHHH
T ss_conf             879988116169967986348852004540288897-5339950111011221302404896179996999999999999


Q ss_pred             HHHHCCCCCCCCCCHHHHHHHCCCCCCEECCC-CCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             99856971767768678886179864170188-87467999999998723886769994000011678888889986543
Q gi|254780392|r  401 GLSTGELLWRMPMNEEYNKLIESKFADMKNIG-GRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPKEINQSWASGF  479 (494)
Q Consensus       401 ~~~~ge~~w~lPl~~~y~~~~~s~~AD~~n~~-~~~~g~~~aa~fl~~f~~~~~w~HlDiag~a~~~~~~~~~~~g~tg~  479 (494)
                      |+.+||++||||||++|+++++|++||++|++ ++.||+|+||+||++||+++||+|||||||+|     .+.|+|+|||
T Consensus       241 g~~~ge~~W~lPl~~~y~~~i~s~~AD~~N~~~~~~~g~~~Aa~FL~~Fv~~~~W~HlDIAg~a~-----~~~~~g~TG~  315 (335)
T 3kr4_A          241 SKTSNEPVWWLPIINEYRATLNSKYADINQISSSVKASSIVASLFLKEFVQNTAWAHIDIAGVSW-----NFKARKPKGF  315 (335)
T ss_dssp             HHHHTCCEEECCCCGGGGGGGCCSSSSEESSCSSCCCHHHHHHHHHHTTCSSSEEEEEECTTTSE-----ETTTTEECCT
T ss_pred             HHHHCCCEEECCCCHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCC-----CCCCCCCCCH
T ss_conf             99849976408998888977699688741789689724179999999767997989995687588-----8999895413


Q ss_pred             CHHHHHHHHHHHCCC
Q ss_conf             589999999976689
Q gi|254780392|r  480 GVRLLDEFVRAFYEK  494 (494)
Q Consensus       480 ~vr~l~~~~~~~~~~  494 (494)
                      |||||+||++++.++
T Consensus       316 gvr~L~~~l~~~a~~  330 (335)
T 3kr4_A          316 GVRLLTEFVLNDALH  330 (335)
T ss_dssp             THHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             199999999852433


No 2  
>>1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A {Escherichia coli} (A:165-503)
Probab=100.00  E-value=0  Score=959.37  Aligned_cols=328  Identities=44%  Similarity=0.758  Sum_probs=316.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHH-HCCC--CCHHHHCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             37899999999999999998642021254030299999999986-1133--21000011100013458988742025778
Q gi|254780392|r  161 IQQSSQVVADIQSVVKGVNLARDIINEPANVLGTDEFCKQVRKL-ESLG--VAVEILDKEAMHKLGMNALLAVAQGSSRP  237 (494)
Q Consensus       161 ~~~~~~~i~~~~aiaegv~lARDLvN~PaN~ltP~~lA~~a~~l-~~~g--l~v~Vld~~~L~klGMg~llaVgqGS~~~  237 (494)
                      ....++.+++++++++|+++||||+|+|||+|||++||++++++ +++|  ++|+|+++++|+++|||+||+|||||.+|
T Consensus         3 ~~~~~~~~~~~~~~a~~~~~ARdL~n~P~n~ltP~~~ae~a~~~~~~~g~~v~v~Vl~~~~l~e~gmg~~laVgkgS~~p   82 (339)
T 1gyt_A            3 LTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNE   82 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCSHHHHHHHHHHHHHHTTTTEEEEEECHHHHHHTTCHHHHHHHHTSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCCCCCCEEEECCCCCCC
T ss_conf             48899999999999999999985248997585210799999998752489549999237874014762020002466789


Q ss_pred             CEEEEEECCCCCC-CCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf             5068862057886-565126630211200663100333320023221123568999999998708787289986410266
Q gi|254780392|r  238 PYLAVMKWEGGDS-EEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENM  316 (494)
Q Consensus       238 Prli~l~Y~g~~~-~~~piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN~  316 (494)
                      ||||+|+|+|.+. .++||+|||||||||||||||||+.+|++||+||||||+|+|+|+++++|++|+||++++|+||||
T Consensus        83 P~li~l~Y~g~~~~~~~~i~lVGKGiTfDtGG~~lKp~~~M~~Mk~DM~GAAaVlga~~a~a~l~~~~nv~avl~l~EN~  162 (339)
T 1gyt_A           83 SLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENM  162 (339)
T ss_dssp             CEEEEEEEECCCCTTCCCEEEEEEEEEEECCTTSCCCSTTGGGGGGGGHHHHHHHHHHHHHHHHTCSSEEEEEEEEEEEC
T ss_pred             CCEEEEEECCCCCCCCCCEEEECCEEEEECCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHC
T ss_conf             85458862587766677579873467860688543466784448121468999999999999859986669994326437


Q ss_pred             CCCCCCCHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEECCHHHHHH
Q ss_conf             89997470776302489588863478664036523678875207961355211120023543177605787089899999
Q gi|254780392|r  317 PGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQ  396 (494)
Q Consensus       317 ~~~~a~~pgdvi~~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ATLTGa~~~alG~~~~g~~~n~~~~~~~  396 (494)
                      ||++|||||||||+||||||||.||||||||||||+|+|| ++++|+.|||+|||||||++|||+.++|+|+|||+++++
T Consensus       163 i~~~a~~PgDVi~s~~GkTVEI~NTDAEGRLvLADaL~ya-~~~~p~~iiDiATLTGa~~~aLG~~~ag~~sn~d~l~~~  241 (339)
T 1gyt_A          163 PGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYV-ERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHE  241 (339)
T ss_dssp             CSTTCCCTTCEEECTTSCEEECSCTTCCHHHHHHHHHHHG-GGGCCSEEEEEECCCHHHHHHHTTTSEEEEESCHHHHHH
T ss_pred             CCCCCCCCCCEEEECCCCEEEEECCCCHHHHHHHHHHHHH-HHHCCCEEEEEECCCCCCHHHCCCCCCCCCCCCHHHHHH
T ss_conf             7899888888788179988998378816766436799998-761998377640025503310388611120598999999


Q ss_pred             HHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf             99989985697176776867888617986417018887467999999998723886769994000011678888889986
Q gi|254780392|r  397 LLSSGLSTGELLWRMPMNEEYNKLIESKFADMKNIGGRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPKEINQSWA  476 (494)
Q Consensus       397 ~~~a~~~~ge~~w~lPl~~~y~~~~~s~~AD~~n~~~~~~g~~~aa~fl~~f~~~~~w~HlDiag~a~~~~~~~~~~~g~  476 (494)
                      +++||+.+||++||||||++|+++++|++|||+|+++|.+|+|+||+||+|||+++||+|||||||+|    .++.++|+
T Consensus       242 ~~~ag~~~gE~~W~lPl~~~y~~~l~S~~ADl~N~~~~~~g~~~AA~FL~~Fv~~~~W~HlDIAg~a~----~~~~~~ga  317 (339)
T 1gyt_A          242 LIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAW----RSGKAKGA  317 (339)
T ss_dssp             HHHHHHHHTCCEEECCCCHHHHGGGCCSSSSEESCCCSTTHHHHHHHHHHTTCTTSCEEEEECTTTSE----ECGGGCEE
T ss_pred             HHHHHHHHCCCEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC----CCCCCCCC
T ss_conf             99999982997632899888997769962010078999623899999999767998979995677765----89999894


Q ss_pred             CCCCHHHHHHHHHHHCC
Q ss_conf             54358999999997668
Q gi|254780392|r  477 SGFGVRLLDEFVRAFYE  493 (494)
Q Consensus       477 tg~~vr~l~~~~~~~~~  493 (494)
                      ||||||||+||+++...
T Consensus       318 TG~gvr~L~~~l~~~a~  334 (339)
T 1gyt_A          318 TGRPVALLAQFLLNRAG  334 (339)
T ss_dssp             CCTTHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHC
T ss_conf             13699999999997756


No 3  
>>3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family, IDP01962, cytoplasm, hydrolase, manganese, metal-binding, protease, structural genomics; HET: PGE PG4; 1.80A {Coxiella burnetii} (A:158-482)
Probab=100.00  E-value=0  Score=954.36  Aligned_cols=322  Identities=36%  Similarity=0.601  Sum_probs=311.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHH-HCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf             999999999999998642021254030299999999986-1133210000111000134589887420257785068862
Q gi|254780392|r  166 QVVADIQSVVKGVNLARDIINEPANVLGTDEFCKQVRKL-ESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMK  244 (494)
Q Consensus       166 ~~i~~~~aiaegv~lARDLvN~PaN~ltP~~lA~~a~~l-~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~  244 (494)
                      .++++++++++|+++||||+|+|||+|||++||++++++ ++++++|+|+|+++|++ |||+|++|||||.+|||||+|+
T Consensus         1 a~~~~~~~~a~g~~~ARdL~n~P~n~ltP~~~a~~a~~~~~~~g~~v~V~~~~~le~-gmg~~laVg~gS~~pP~~i~l~   79 (325)
T 3ij3_A            1 AHRKRVTDWLTTIYLIRDLINTPAEDMGPSELAQAVKHVAKEFEAKVKIIESKDLET-EFPAIYAVGRAGSRPPLLIDLK   79 (325)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCGGGSSHHHHHHHHHHHHHHHTCEEEEEEHHHHHH-HCHHHHHHHTTSSSCCEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHC-CCCCEEEEECCCCCCCEEEEEE
T ss_conf             018999999999999998726893547999999999999976599799974999872-5876220105568997799997


Q ss_pred             CCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCH
Q ss_conf             05788656512663021120066310033332002322112356899999999870878728998641026689997470
Q gi|254780392|r  245 WEGGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSSAQRP  324 (494)
Q Consensus       245 Y~g~~~~~~piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN~~~~~a~~p  324 (494)
                      |+|.+  ++||+|||||||||||||||||+.+|++||+||||||+|+|+|+++++|++|+||++++|+||||||++||||
T Consensus        80 Y~~~~--~~~i~lVGKGitfDtGG~~LKp~~~M~~Mk~DM~GAAaV~ga~~a~a~l~~~~nv~~il~l~EN~i~~~A~~P  157 (325)
T 3ij3_A           80 WGDIK--APKVTLVGKGVCFDSGGLDIKTPGGMLLMKKDMGGAAHALGLARMIMLQQLPVRLRLLIPAVENAIGSRSYRP  157 (325)
T ss_dssp             ESCTT--SCEEEEEECEEEEECCTTSCCCHHHHTTGGGGGHHHHHHHHHHHHHHHTTCSSEEEEEEEEEEECCSTTCCCT
T ss_pred             ECCCC--CCEEEEEECCEEEECCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCC
T ss_conf             04899--9769997065798379756467256887765048899999999999973999379999983125868788899


Q ss_pred             HHHHCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf             77630248958886347866403652367887520796135521112002354317760578708989999999989985
Q gi|254780392|r  325 GDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLST  404 (494)
Q Consensus       325 gdvi~~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ATLTGa~~~alG~~~~g~~~n~~~~~~~~~~a~~~~  404 (494)
                      |||||+||||||||.||||||||||||+|+|| ++|+|+.|||+|||||||++|||.+++|+|||||+|++++++||+.+
T Consensus       158 gDVit~~nGkTVEI~NTDAEGRLvLADaL~yA-~~~~p~~iiD~ATLTGa~~~aLG~~~ag~~sn~d~l~~~l~~Ag~~~  236 (325)
T 3ij3_A          158 GDVVQTRARKTIEITNTDAEGRVVLADALAEA-VKEDPDLIIDFSTLTGAARIALGPNLPALFANQDSLAQALIDASLKT  236 (325)
T ss_dssp             TCEEECTTSCEEECSCTTCCHHHHHHHHHHHH-HTTCCSEEEEEEECCSGGGCTTCTTSCEEEESSHHHHHHHHHHHHHH
T ss_pred             CCEEEECCCCEEEEECCCCCCEEEEHHHHHHH-HHCCCCEEEECCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHC
T ss_conf             87788169978987326863005541167777-75099889980045878998738983488729989999999999973


Q ss_pred             CCCCCCCCCCHHHHHHHCCCCCCEECCC-CCCHHHHHHHHHHHHHCC-CCCEEEEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf             6971767768678886179864170188-874679999999987238-86769994000011678888889986543589
Q gi|254780392|r  405 GELLWRMPMNEEYNKLIESKFADMKNIG-GRGAGSIVAAQFLEKFVQ-DASWAHIDIAGVATGGYPKEINQSWASGFGVR  482 (494)
Q Consensus       405 ge~~w~lPl~~~y~~~~~s~~AD~~n~~-~~~~g~~~aa~fl~~f~~-~~~w~HlDiag~a~~~~~~~~~~~g~tg~~vr  482 (494)
                      ||++||||+|++|+++|||++|||+|++ +|.+|+|+||+||++||+ ++||+|||||||+|.+  ++|.|+|+||||||
T Consensus       237 gE~~WrlPl~~~~~~~lks~~ADl~N~~~~~~~g~~~Aa~FL~~Fv~~~~~W~HlDIAgta~~~--~~~~~~gaTG~gvr  314 (325)
T 3ij3_A          237 DDPLWRLPLFQPYRNYLKSEVADLTNSSQNRMAGAITAALFLQHFVSDQIPWAHFDIFAWNLED--LPGRPIGGEAMALR  314 (325)
T ss_dssp             TCCCEECCCCGGGGGGGCCSSSSEESSCSSSSCHHHHHHHHHHTTSCTTSCEEEEEECCEESSC--BTTBCSEECCCSHH
T ss_pred             CCCEECCCCCHHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCC--CCCCCCCCHHHHHH
T ss_conf             9977658898888976799631012799999961279999998625899784899755667999--99998997517999


Q ss_pred             HHHHHHHHHCC
Q ss_conf             99999997668
Q gi|254780392|r  483 LLDEFVRAFYE  493 (494)
Q Consensus       483 ~l~~~~~~~~~  493 (494)
                      ||++|++++.+
T Consensus       315 tL~~~l~~~~k  325 (325)
T 3ij3_A          315 AVFHYLEQQYR  325 (325)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHCC
T ss_conf             99999998619


No 4  
>>2hc9_A Leucine aminopeptidase 1; zinc, carbonate, structural genomics, PSI, protein structure initiative; 1.85A {Caenorhabditis elegans} PDB: 2hb6_A (A:155-491)
Probab=100.00  E-value=0  Score=946.85  Aligned_cols=322  Identities=31%  Similarity=0.529  Sum_probs=310.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHH-HCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf             9999999999999998642021254030299999999986-113321000011100013458988742025778506886
Q gi|254780392|r  165 SQVVADIQSVVKGVNLARDIINEPANVLGTDEFCKQVRKL-ESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVM  243 (494)
Q Consensus       165 ~~~i~~~~aiaegv~lARDLvN~PaN~ltP~~lA~~a~~l-~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l  243 (494)
                      ++.+++++++++|+++||||+|+|||+|||+.||++++++ +++|++|+|+++++|+++|||+|++|||||.+|||||+|
T Consensus         3 e~~~~~~~~~~~~~~~aR~L~n~P~n~ltP~~~a~~a~~~~~~~gv~v~v~~~~~l~~~gmg~~~aVg~gS~~~P~li~l   82 (337)
T 2hc9_A            3 NEDAVFLTDLSESVRETARLIDTPANILTTDALVDEAVKVGNATGSKITVIRGEELLKAGFGGIYHVGKAGPTPPAFVVL   82 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHTTCEEEEEETHHHHHHTCHHHHHHHTTSSSCCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHCCCCCEEEEECCCCCCCEEEEE
T ss_conf             88999999999999999998758853209999999999977554998999829999972999766652046899879999


Q ss_pred             ECCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf             20578865651266302112006631003333200232211235689999999987087872899864102668999747
Q gi|254780392|r  244 KWEGGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSSAQR  323 (494)
Q Consensus       244 ~Y~g~~~~~~piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN~~~~~a~~  323 (494)
                      +|+|.++ ++||+|||||||||||||||||+.+|++||+||||||+|+|+|+++++|++|+||++++|+||||||++|||
T Consensus        83 ~Y~g~~~-~~~i~lVGKGitfDsGGl~lK~~~~M~~Mk~DM~GAAaVlg~~~aia~l~~~~nV~~il~l~EN~i~~~A~~  161 (337)
T 2hc9_A           83 SHEVPGS-TEHIALVGKGVVYDTGGLQIKTKTGMPNMKRDMGGAAGMLEAYSALVKHGFSQTLHACLCIVENNVSPIANK  161 (337)
T ss_dssp             EECCTTC-SCEEEEEEEEEEEECCTTSCCCTTTSTTGGGGGHHHHHHHHHHHHHHTTTCCSEEEEEEEEEEECCSTTSCC
T ss_pred             EECCCCC-CCCEEEEECCEEECCCEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCC
T ss_conf             9778998-875699823368424413467567788876404551589999999987378871799987420467788753


Q ss_pred             HHHHHCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf             07763024895888634786640365236788752079613552111200235431776057870898999999998998
Q gi|254780392|r  324 PGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLS  403 (494)
Q Consensus       324 pgdvi~~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ATLTGa~~~alG~~~~g~~~n~~~~~~~~~~a~~~  403 (494)
                      ||||||++|||||||.||||||||||||+|+||+++|+|+.|||+|||||||++|||++++|+|||||++++++++||+.
T Consensus       162 pgDVits~nGkTVEV~NTDAEGRLvLADal~ya~~~~~p~~iID~ATLTGa~~~ALG~~~ag~~sn~d~l~~~l~~a~~~  241 (337)
T 2hc9_A          162 PDDIIKMLSGKTVEINNTDAEGRLILADGVFYAKETLKATTIFDMATLTGAQAWLSGRLHGAAMTNDEQLENEIIKAGKA  241 (337)
T ss_dssp             TTCEEECTTSCEEECSCTTCCHHHHHHHHHHHHHHTTCCSEEEEEECCCTTHHHHHTTTSEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCEEEECCCCCCCEEEEHHHHHHHHCCCCCHHHCCCCCCHHHEEECCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf             47557814897202205676441555227888652158500003144553210756885556671789999999999997


Q ss_pred             HCCCCCCCCCCHH-HHHHHCCCCCCEECCC---CCCHHHHHHHHHHHHHC---CCCCEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf             5697176776867-8886179864170188---87467999999998723---886769994000011678888889986
Q gi|254780392|r  404 TGELLWRMPMNEE-YNKLIESKFADMKNIG---GRGAGSIVAAQFLEKFV---QDASWAHIDIAGVATGGYPKEINQSWA  476 (494)
Q Consensus       404 ~ge~~w~lPl~~~-y~~~~~s~~AD~~n~~---~~~~g~~~aa~fl~~f~---~~~~w~HlDiag~a~~~~~~~~~~~g~  476 (494)
                      +||++||||||++ |+++++|++|||+|++   ++.+++|+||+||+|||   +++||+|||||||+|       .++|+
T Consensus       242 ~gE~~W~lPl~~~~~~~~~~S~~ADl~N~~~~~~~~~~s~~Aa~FL~~Fv~~~~~~~W~HlDIAG~a~-------~~kga  314 (337)
T 2hc9_A          242 SGDLVAPMLFAPDLFFGDLKSSIADMKNSNLGKMDGPPSAVAGLLIGAHIGFGEGLRWLHLDIAAPAE-------VGDRG  314 (337)
T ss_dssp             HSCCEEECCCCHHHHGGGGCCSSSSEESCCSSCCSSCHHHHHHHHHHTTTGGGTTSEEEEEECTTTTE-------ETTEE
T ss_pred             HCCCEECCCCCHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC-------CCCCC
T ss_conf             17821048899367887569825533266899988378999999999745889999869998021257-------99796


Q ss_pred             CCCCHHHHHHHHHHHCCC
Q ss_conf             543589999999976689
Q gi|254780392|r  477 SGFGVRLLDEFVRAFYEK  494 (494)
Q Consensus       477 tg~~vr~l~~~~~~~~~~  494 (494)
                      ||||||||++|++++.++
T Consensus       315 TG~gvrtL~~~l~~~~~~  332 (337)
T 2hc9_A          315 TGYGPALFSTLLGKYTSV  332 (337)
T ss_dssp             CCCSHHHHHHHHGGGSSC
T ss_pred             CCCCHHHHHHHHHHCCCC
T ss_conf             367499999999853888


No 5  
>>3kzw_A Cytosol aminopeptidase; cytoplasm, hydrolase, manganese, metal-binding, protease, structural genomics; 2.70A {Staphylococcus aureus subsp} (A:213-515)
Probab=100.00  E-value=0  Score=918.14  Aligned_cols=300  Identities=34%  Similarity=0.599  Sum_probs=294.7

Q ss_pred             EECHHHHHHHHHHH-HCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEECCEEECCCCC
Q ss_conf             30299999999986-11332100001110001345898874202577850688620578865651266302112006631
Q gi|254780392|r  191 VLGTDEFCKQVRKL-ESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQPLAFIGKGVVFDTGGI  269 (494)
Q Consensus       191 ~ltP~~lA~~a~~l-~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~~piaLVGKGvTFDtGGi  269 (494)
                      +|||++|+++++++ ++++++|+|+++++|+++|||+|++|||||.+|||||+|+|+|.+++++||+|||||||||||||
T Consensus         1 iltP~~~a~~a~~~~~~~~i~v~V~~~~~l~~~gmg~~laVg~gS~~pP~li~l~Y~g~~~~~~~i~lVGKGiTFDsGG~   80 (303)
T 3kzw_A            1 VLTPQTFAEDIVNHFKNTKVKVDVKDYDTLVSEGFGLLQAVGKGSKHKPRLVTITYNGKDKDEAPIALVGKGITYDSGGY   80 (303)
T ss_dssp             TSCHHHHHHHHHHHSTTSSCEEEEECHHHHHHTTCHHHHHHHTTSSSCCEEEEEEEESSCSSCCCEEEEEEEEEEECCTT
T ss_pred             CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCEEEEECCEEEEECCCC
T ss_conf             15999999999998365762999767999988699706065047788873368832688777760798546378741753


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCEEEE
Q ss_conf             00333320023221123568999999998708787289986410266899974707763024895888634786640365
Q gi|254780392|r  270 SIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLIL  349 (494)
Q Consensus       270 slKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN~~~~~a~~pgdvi~~~~G~tvei~nTDAEGRlvL  349 (494)
                      ||||+.+|++||+||||||+|+|+|+++++|++|+||++++|+||||||++|||||||||+||||||||.||||||||||
T Consensus        81 slKp~~~M~~Mk~DM~GAAaVlga~~a~a~l~l~vnv~~il~l~EN~i~g~a~rPgDVi~s~~GkTvEV~NTDAEGRLVL  160 (303)
T 3kzw_A           81 SIKTKNGMATMKFDMCGAANVVGIIEAASRLQLPVNIVGVLACAENMINEASMKPDDVFTALSGETVEVMNTDAEGRLVL  160 (303)
T ss_dssp             SCCCHHHHTTGGGGGHHHHHHHHHHHHHHHTTCSCEEEEEEEEEEECCCTTCCCTTCEEECTTSCEEECSCTTCCHHHHH
T ss_pred             CCCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEHHHHCCCCCCCCCCCEEECCCCCEEEEECCCCHHHHHH
T ss_conf             34685424441135255799999999999728876548999712207898888899867817998899853770566633


Q ss_pred             EHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEE-ECCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHC-CCCCC
Q ss_conf             23678875207961355211120023543177605787-08989999999989985697176776867888617-98641
Q gi|254780392|r  350 ADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLF-ANNDVLAEQLLSSGLSTGELLWRMPMNEEYNKLIE-SKFAD  427 (494)
Q Consensus       350 aD~l~ya~~~~~p~~iid~ATLTGa~~~alG~~~~g~~-~n~~~~~~~~~~a~~~~ge~~w~lPl~~~y~~~~~-s~~AD  427 (494)
                      ||+|+|| ++++|+.|||+|||||||++|||++++|+| ||||+|++++++||+.+||++||||||++|+++++ |++||
T Consensus       161 ADaL~~a-~~~~p~~iIDiATLTGa~~~ALG~~~agv~~sNd~~l~~~l~~Ag~~~gE~~WrlPl~~~y~~~l~~S~iAD  239 (303)
T 3kzw_A          161 ADAVFYA-NQYQPSVIMDFATLTGAAIVALGDDKAAAFESNSKVILNDILQISSEVDEMVFELPITATERASIKHSDIAD  239 (303)
T ss_dssp             HHHHHHH-HTTCCSEEEEEECCCHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCEEECCCCHHHHHHTTCCSSSS
T ss_pred             HHHHHHH-HCCCCCEEEECHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHCCCCCCHH
T ss_conf             7788764-035998887015333132263378743453478699999999999986896788889976886360698010


Q ss_pred             EECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             7018887467999999998723886769994000011678888889986543589999999976
Q gi|254780392|r  428 MKNIGGRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPKEINQSWASGFGVRLLDEFVRAF  491 (494)
Q Consensus       428 ~~n~~~~~~g~~~aa~fl~~f~~~~~w~HlDiag~a~~~~~~~~~~~g~tg~~vr~l~~~~~~~  491 (494)
                      |+|+++|.+|+|+||+||++||+++||+|||||||+|.++++++.|+|+||||||||+||++++
T Consensus       240 l~N~~~~~~ga~~Aa~FL~~Fv~~~~W~HlDiAG~a~~~~~~~~~~~gaTG~gvr~L~~~l~~~  303 (303)
T 3kzw_A          240 LVNHTNGQGKALFAASFVTHFSGQTPHIHFDIAGPATTNKASYNGPKGPTGFMIPTIVQWLKQQ  303 (303)
T ss_dssp             EESCCSSSCHHHHHHHHHHGGGTTSCEEEEECTTTTEESSCBTTBSSEECCTTHHHHHHHHTTC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCC
T ss_conf             4799999678899999999748998989997676676788877999981454699999999609


No 6  
>>1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase (alpha-aminoacylpeptide); 1.60A {Bos taurus} (A:177-484)
Probab=100.00  E-value=0  Score=890.37  Aligned_cols=302  Identities=42%  Similarity=0.696  Sum_probs=290.1

Q ss_pred             EECHHHHHHHHHHH-HCCC--CCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCC-CCCCEEEEECCEEECC
Q ss_conf             30299999999986-1133--210000111000134589887420257785068862057886-5651266302112006
Q gi|254780392|r  191 VLGTDEFCKQVRKL-ESLG--VAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDS-EEQPLAFIGKGVVFDT  266 (494)
Q Consensus       191 ~ltP~~lA~~a~~l-~~~g--l~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~-~~~piaLVGKGvTFDt  266 (494)
                      +|||++||++++++ ++++  ++|+|+|+++|+++|||+|++|||||.+|||||+|+|+|.++ .++||+||||||||||
T Consensus         1 ~ltP~~~a~~~~~l~~~~g~~v~v~i~~~~~l~~~g~g~~~aVg~GS~~~P~li~l~Y~g~~~~~~~~i~LVGKGitfDt   80 (308)
T 1lam_A            1 EMTPTKFAEIVEENLKSASIKTDVFIRPKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKGSPNASEPPLVFVGKGITFDS   80 (308)
T ss_dssp             TSCHHHHHHHHHHHHHHHCSSEEEEEECHHHHHHTTCHHHHHHHTTSSSCCEEEEEEEECSSSTTSCCEEEEECEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCEEEECCCEEEEC
T ss_conf             22989999999999875287156504669999845997057761267789724688504765556787799636226505


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCE
Q ss_conf             63100333320023221123568999999998708787289986410266899974707763024895888634786640
Q gi|254780392|r  267 GGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGR  346 (494)
Q Consensus       267 GGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN~~~~~a~~pgdvi~~~~G~tvei~nTDAEGR  346 (494)
                      |||||||+.+|++||+||||||+|+|+|+++++|++|+||++++|+||||||++|||||||||+||||||||.|||||||
T Consensus        81 GG~~lK~~~~M~~Mk~DM~GAAaV~g~~~a~a~l~l~vnv~ail~l~EN~i~~~A~~PgDVi~s~nGkTVEI~nTDAEGR  160 (308)
T 1lam_A           81 GGISIKAAANMDLMRADMGGAATICSAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGR  160 (308)
T ss_dssp             CTTSCCCSTTGGGGGGTTHHHHHHHHHHHHHHHTTCSSEEEEEEEEEEECCSTTSCCTTEEEECTTSCEEEESCTTCCHH
T ss_pred             CCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCEEECCCCCEEEEECCCCCCE
T ss_conf             88676887674442201312589999999999836997669999735236788888899778846995423323786533


Q ss_pred             EEEEHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCHHHHH-HHCCCC
Q ss_conf             3652367887520796135521112002354317760578708989999999989985697176776867888-617986
Q gi|254780392|r  347 LILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLSTGELLWRMPMNEEYNK-LIESKF  425 (494)
Q Consensus       347 lvLaD~l~ya~~~~~p~~iid~ATLTGa~~~alG~~~~g~~~n~~~~~~~~~~a~~~~ge~~w~lPl~~~y~~-~~~s~~  425 (494)
                      |||||+|+|| ++++|+.|||+|||||||++|||+.++|+|+|||++++++++||+.+||++||||+|++|.+ .++|++
T Consensus       161 LvLADaL~yA-~~~~p~~iiDiATLTGa~~~ALG~~~ag~~sn~~~l~~~~~~a~~~~gE~~W~lPl~~~y~~~~~~S~~  239 (308)
T 1lam_A          161 LILADALCYA-HTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHYTRQVIDCQL  239 (308)
T ss_dssp             HHHHHHHHHH-HTTCCSEEEEEECCCHHHHHHHTTSCEEEEESCHHHHHHHHHHHHHHSCCEEECCCCHHHHHHHHCCSS
T ss_pred             EEEHHHHHHH-HHCCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHCCCCH
T ss_conf             6750277886-503985144212130103162688632220388999999999999818975458896667676539960


Q ss_pred             CCEECCC-CCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             4170188-8746799999999872388676999400001167888888998654358999999997668
Q gi|254780392|r  426 ADMKNIG-GRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPKEINQSWASGFGVRLLDEFVRAFYE  493 (494)
Q Consensus       426 AD~~n~~-~~~~g~~~aa~fl~~f~~~~~w~HlDiag~a~~~~~~~~~~~g~tg~~vr~l~~~~~~~~~  493 (494)
                      |||+|++ +|.+|+|+||+||++||+++||+|||||||+|++++++|.++|+||||||||+||++++.+
T Consensus       240 ADi~N~~~~~~ag~~~AA~FL~~Fv~~~~W~HlDIAg~a~~~~~~~~~~~g~TG~~vr~l~~~l~~~~k  308 (308)
T 1lam_A          240 ADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPYLRKGMAGRPTRTLIEFLFRFSQ  308 (308)
T ss_dssp             SSEESSCSSSTTHHHHHHHHHHTTCCCSSEEEEECGGGSEESSSSTTSCSEECCTTHHHHHHHHHHHHC
T ss_pred             HHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHCC
T ss_conf             310279968982656999999975899797999777336268987689998060219999999998619


No 7  
>>3kzw_A Cytosol aminopeptidase; cytoplasm, hydrolase, manganese, metal-binding, protease, structural genomics; 2.70A {Staphylococcus aureus subsp} (A:1-212)
Probab=99.94  E-value=7.7e-26  Score=201.89  Aligned_cols=182  Identities=18%  Similarity=0.223  Sum_probs=152.0

Q ss_pred             EEEEEEECCCCCCCCEEEEEECCCCCCC--CCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCH
Q ss_conf             0699950778776771699962686632--22212388889999998089983678789984378887445999944881
Q gi|254780392|r    2 DIKFSFAKNPSIKQEGLAILLKTSFSDV--AGLSLIGSPSIVMRAVSVKNFIGESKSHLNILAPVDCVWDRLVVAGIGDP   79 (494)
Q Consensus         2 ~mkis~~~~~~~~~d~lvV~~~~~~~~~--~~~~~~~~~~~L~~~i~~~~F~GK~Ge~l~l~~~~g~~~~rViLVGLG~~   79 (494)
                      .|+|++++....+.++++|++.......  ....+....+.+.++++..+|+||.|+++.++.+.+...+||++||||++
T Consensus        24 ~m~~~~~~~~~~~~~~lvi~v~~~~~~~~~~~~l~~~~~~~i~~~l~~~~f~gk~ge~~~l~~~~~~~~~~i~lvGlG~~  103 (212)
T 3kzw_A           24 AMNFKLNNTLSNEINTLIIGIPEHLNQLERISFNHIDITESLERLKHQHIIGSKVGKIYTTAFDVQDQTYRLITVGLGNL  103 (212)
T ss_dssp             SEEEEESCCCCTTCCEEEEEEESCGGGSCCCEETTEECHHHHHHHHHTTSSCCSBTCEEEEEEEETTEEEEEEEEEEECS
T ss_pred             CCEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEEECCCH
T ss_conf             20012102345578769996757765320033425668988999876250257646524320347887655999946861


Q ss_pred             HHCCHH-HHHHHHHHHHHHHHCCCEEEEECCCCCCC----CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             558999-99999999998531697489941778999----9899999999997147775444436433323210001333
Q gi|254780392|r   80 RDANFS-WLKAGGSIASYIEEDKNIEIFVDVPEYPI----TKAEIRDLVLGFMLKTYTFDQYKTKKRESSSPRSKENISV  154 (494)
Q Consensus        80 ~~~~~~-~~ra~a~~~~~l~~~~~~~v~i~l~~~~~----~~~~~~~~~eG~~L~~Y~Fd~yKskk~~~~~~~~~~~~~i  154 (494)
                      ++++.+ ++++++.+++.+++.+.+++.+.++....    ..+.++++++|+.|++|+|++||+++++...+...    +
T Consensus       104 ~~~~~~~~r~a~~~~~~~l~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~l~~Y~f~~yKs~~~~~~~~~~~----l  179 (212)
T 3kzw_A          104 KTRSYQDMLKIWGHLFQYIKSEHIEDTYLLMDSFISKYDQLSDVLMACGIQSERATYEFDHYKSSKKAPFKTNLN----L  179 (212)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTCCEEEEEGGGTCCSSSCHHHHHHHHHHHHHHTTCCCCTTCTTCCCCCCEEEE----E
T ss_pred             HHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE----E
T ss_conf             657999999999999998632576189998873346642599999999999984774357566799876675489----9


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             224577378999999999999999986420212540
Q gi|254780392|r  155 TIVTEMIQQSSQVVADIQSVVKGVNLARDIINEPAN  190 (494)
Q Consensus       155 ~~~~~~~~~~~~~i~~~~aiaegv~lARDLvN~PaN  190 (494)
                         .......++.+++++++++||++||||+|+|||
T Consensus       180 ---~~~~~~~~~~~~~~~aia~gv~laRdLvN~PaN  212 (212)
T 3kzw_A          180 ---ISESLIELDFIHEGISIGQSINLARDFSNMPPN  212 (212)
T ss_dssp             ---ECSSCCCCHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             ---ECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             ---358667699999999999999999986378760


No 8  
>>1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase (alpha-aminoacylpeptide); 1.60A {Bos taurus} (A:1-176)
Probab=99.83  E-value=9e-22  Score=173.20  Aligned_cols=164  Identities=14%  Similarity=0.088  Sum_probs=119.7

Q ss_pred             CCEEEEEECCCCCCCCCC--------CCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCHHHCCHH-
Q ss_conf             771699962686632222--------12388889999998089983678789984378887445999944881558999-
Q gi|254780392|r   15 QEGLAILLKTSFSDVAGL--------SLIGSPSIVMRAVSVKNFIGESKSHLNILAPVDCVWDRLVVAGIGDPRDANFS-   85 (494)
Q Consensus        15 ~d~lvV~~~~~~~~~~~~--------~~~~~~~~L~~~i~~~~F~GK~Ge~l~l~~~~g~~~~rViLVGLG~~~~~~~~-   85 (494)
                      +|+|+|++..+.......        .+....+.++++++..+|+||.|+++.+|.+ +...+||++||||+.++.+.+ 
T Consensus         1 ~d~Lvv~v~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~f~gk~ge~~~l~~~-~~~~~~v~lvGlG~~~~~~~~~   79 (176)
T 1lam_A            1 TKGLVLGIYSKEKEEDEPQFTSAGENFNKLVSGKLREILNISGPPLKAGKTRTFYGL-HEDFPSVVVVGLGKKTAGIDEQ   79 (176)
T ss_dssp             CEEEEEEECCCCTTCSSCCBCHHHHHHHHHTTTHHHHHHHHTCSCCCTTCEEEEEEE-ETTEEEEEEEECCCTTCCEETT
T ss_pred             CCEEEEEEECCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHCCCCCCCCCCEEEEECC-CCCCCEEEEEECCCCCCCCCHH
T ss_conf             943999996367777666659899999998254999999727999887877997379-9987889999688753357878


Q ss_pred             HHHHHHHHHHHHHHCCCEEEEECCCCC---CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             999999999985316974899417789---99989999999999714777544443643332321000133322457737
Q gi|254780392|r   86 WLKAGGSIASYIEEDKNIEIFVDVPEY---PITKAEIRDLVLGFMLKTYTFDQYKTKKRESSSPRSKENISVTIVTEMIQ  162 (494)
Q Consensus        86 ~~ra~a~~~~~l~~~~~~~v~i~l~~~---~~~~~~~~~~~eG~~L~~Y~Fd~yKskk~~~~~~~~~~~~~i~~~~~~~~  162 (494)
                      ++++++.+.+.++..+.....+..+..   ....+.++.+++|+.++.|+|++||+++++.....        +   ...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~Y~f~~~ks~~~~~~~~~--------~---~~~  148 (176)
T 1lam_A           80 ENWHEGKENIRAAVAAGCRQIQDLEIPSVEVDPCGDAQAAAEGAVLGLYEYDDLKQKRKVVVSAK--------L---HGS  148 (176)
T ss_dssp             TTEEHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTCHHHHHHHHHHHHCCCCTTCSSCCCCCEEE--------E---SSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE--------C---CCC
T ss_conf             99999999999999999998742677512239479999999999967710464456666410132--------2---571


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             8999999999999999986420212540
Q gi|254780392|r  163 QSSQVVADIQSVVKGVNLARDIINEPAN  190 (494)
Q Consensus       163 ~~~~~i~~~~aiaegv~lARDLvN~PaN  190 (494)
                      ..+..+++++++++||++||||+|+|||
T Consensus       149 ~~~~~~~~~~aia~gv~laRdLvN~P~N  176 (176)
T 1lam_A          149 EDQEAWQRGVLFASGQNLARRLMETPAN  176 (176)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             6799999999999999999986447961


No 9  
>>1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A {Escherichia coli} (A:1-164)
Probab=99.79  E-value=3.5e-18  Score=147.86  Aligned_cols=147  Identities=14%  Similarity=0.146  Sum_probs=122.8

Q ss_pred             CEEEEEEECCCCCCCCEEEEEECCCCCCCC--CCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEECCC
Q ss_conf             906999507787767716999626866322--221238888999999808998367878998437888744599994488
Q gi|254780392|r    1 MDIKFSFAKNPSIKQEGLAILLKTSFSDVA--GLSLIGSPSIVMRAVSVKNFIGESKSHLNILAPVDCVWDRLVVAGIGD   78 (494)
Q Consensus         1 M~mkis~~~~~~~~~d~lvV~~~~~~~~~~--~~~~~~~~~~L~~~i~~~~F~GK~Ge~l~l~~~~g~~~~rViLVGLG~   78 (494)
                      |++++++......+.|+++|++.++.....  ...+....+.|.++++..+|+||.|+++.++.+.+...+||++||||+
T Consensus         1 Mki~~~~~~~~~~~~d~lvv~v~~~~~~~~~~~~ld~~~~~~l~~~~~~~~f~gk~g~~~~l~~~~~~~~~rvllvGlG~   80 (164)
T 1gyt_A            1 MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGK   80 (164)
T ss_dssp             CEEEEECCCGGGCCSSCEEEEEETTTEECHHHHHHHTTSSSHHHHHHHHTSCCCCTTCEEEEESCTTCSSSEEEEEECCS
T ss_pred             CEEEEECCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCEEEEEECCC
T ss_conf             96899659965367887999984798767889987698778999999748998888988998189987678899996086


Q ss_pred             HHHCCHH-HHHHHHHHHHHHHHCCCEEEEECCCCCCC----CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             1558999-99999999998531697489941778999----989999999999714777544443643332321
Q gi|254780392|r   79 PRDANFS-WLKAGGSIASYIEEDKNIEIFVDVPEYPI----TKAEIRDLVLGFMLKTYTFDQYKTKKRESSSPR  147 (494)
Q Consensus        79 ~~~~~~~-~~ra~a~~~~~l~~~~~~~v~i~l~~~~~----~~~~~~~~~eG~~L~~Y~Fd~yKskk~~~~~~~  147 (494)
                      .++++.+ ++++++++++.+++.+.+++.+.++.+..    ..+.++++++|+.|++|+||+|||+++++..+.
T Consensus        81 ~~~~~~~~~r~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~g~~l~~Y~fd~yKt~~~~~~~~l  154 (164)
T 1gyt_A           81 ERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPL  154 (164)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHSCCSEEEECGGGSCBTTBCHHHHHHHHHHHHHHHHCCCCTTCSSCCCCCCCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             34399999999999999998634554200001334436778799999999998853701010002333444441


No 10 
>>3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family, IDP01962, cytoplasm, hydrolase, manganese, metal-binding, protease, structural genomics; HET: PGE PG4; 1.80A {Coxiella burnetii} (A:1-157)
Probab=99.48  E-value=3.8e-14  Score=119.36  Aligned_cols=122  Identities=15%  Similarity=0.062  Sum_probs=91.5

Q ss_pred             CCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCHHHCCHHHHHHH
Q ss_conf             87767716999626866322221238888999999808998367878998437888744599994488155899999999
Q gi|254780392|r   11 PSIKQEGLAILLKTSFSDVAGLSLIGSPSIVMRAVSVKNFIGESKSHLNILAPVDCVWDRLVVAGIGDPRDANFSWLKAG   90 (494)
Q Consensus        11 ~~~~~d~lvV~~~~~~~~~~~~~~~~~~~~L~~~i~~~~F~GK~Ge~l~l~~~~g~~~~rViLVGLG~~~~~~~~~~ra~   90 (494)
                      .....++++|++.......  ..+....+.+.++++..+|+||.||++.++.+.+  ..|+++||||+.++..     ++
T Consensus        31 ~~~~~~~~~v~~~~~~~~~--~l~~~~~~~i~~~l~~~~F~GK~g~~~~l~~~~g--~~rv~lvGlG~~~~~~-----a~  101 (157)
T 3ij3_A           31 TEKKKNFIPIQPMMPDELP--DWLDTQDARTQQWVKASGFVGLAGTICSIPESTG--ALQRVLLGVSDYEYSW-----DF  101 (157)
T ss_dssp             CSCCTTCEEEEEECGGGHH--HHHTTSCHHHHHHHHHHTCCCCTTCEEEEECTTS--SEEEEEEECSSTTCCG-----GG
T ss_pred             HCCCCCCCCEEEECHHHHH--HHHHCCCHHHHHHHHHCCCCCCCCCEEEEECCCC--CEEEEEEECCCCCCHH-----HH
T ss_conf             4035776745995673688--9985499999999996799778887899887999--7789999838850147-----89


Q ss_pred             HHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             9999985316974899417789999899999999997147775444436433323
Q gi|254780392|r   91 GSIASYIEEDKNIEIFVDVPEYPITKAEIRDLVLGFMLKTYTFDQYKTKKRESSS  145 (494)
Q Consensus        91 a~~~~~l~~~~~~~v~i~l~~~~~~~~~~~~~~eG~~L~~Y~Fd~yKskk~~~~~  145 (494)
                      +++++.++..+...+.+.    ....+.++++++|+.|++|+||+|||+++++..
T Consensus       102 ~~~a~~l~~~~~~~~~~~----~~~~~~~~~~aeG~~L~~YrFd~yKs~~~~~~~  152 (157)
T 3ij3_A          102 GGLSKVLPPGAFQLNRDD----FEDDEYYERALLAFGLGSYQFNAYRKRSPYLAK  152 (157)
T ss_dssp             GGHHHHCCSEEEECCGGG----SSSHHHHHHHHHHHHHTTCCCCSSSCCCCCSEE
T ss_pred             HHHHHHCCCCEEEECCCC----CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCE
T ss_conf             999973765658824577----787689999999998615404746689987660


No 11 
>>3kr4_A M17 leucyl aminopeptidase; protease, hydrolase; HET: BES 1PE; 2.00A {Plasmodium falciparum} PDB: 3kqz_A* 3kqx_A* 3kr5_A* (A:1-193)
Probab=97.72  E-value=0.0044  Score=41.33  Aligned_cols=138  Identities=14%  Similarity=0.082  Sum_probs=96.6

Q ss_pred             EEEECCCCCCCCEEEEEECCCCC-CCCCCC--CCCCHHHHHHHHHC---CCCCCCCCCEEEEEC-CCCCCCCEEEEEECC
Q ss_conf             99507787767716999626866-322221--23888899999980---899836787899843-788874459999448
Q gi|254780392|r    5 FSFAKNPSIKQEGLAILLKTSFS-DVAGLS--LIGSPSIVMRAVSV---KNFIGESKSHLNILA-PVDCVWDRLVVAGIG   77 (494)
Q Consensus         5 is~~~~~~~~~d~lvV~~~~~~~-~~~~~~--~~~~~~~L~~~i~~---~~F~GK~Ge~l~l~~-~~g~~~~rViLVGLG   77 (494)
                      +.-.+..-.-.+.|+||+..+.+ +.....  .......|...++.   ..|.||.|..-.+|- ....+...+-+||||
T Consensus        31 vkD~ke~C~~ddgl~iFLvns~~K~ng~~KIsS~ikD~~inEFL~~~N~d~FngKlGTsksFYi~Nek~kyv~l~~i~CG  110 (193)
T 3kr4_A           31 VYDIKGGCNVEEGLTIFLVNNPGKENGPVKISSKVNDKQVSEFLKDENMEKFNVKLGTSKHFYMFNDNKNSVAVGYVGCG  110 (193)
T ss_dssp             EEEGGGCBCCCSSEEEEEECCSSSTTCBCCCCSCBSCHHHHHHTSHHHHTTSBCCTTCEEEEEEECTTSCEEEEEEEECC
T ss_pred             EEECCCCCCCCCCEEEEEECCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEEEEECC
T ss_conf             98566675467765999954787446661032204725689999973442056545886999843876562389999289


Q ss_pred             CHHHCCH-HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             8155899-99999999999853169748994177899998999999999971477754444364333
Q gi|254780392|r   78 DPRDANF-SWLKAGGSIASYIEEDKNIEIFVDVPEYPITKAEIRDLVLGFMLKTYTFDQYKTKKRES  143 (494)
Q Consensus        78 ~~~~~~~-~~~ra~a~~~~~l~~~~~~~v~i~l~~~~~~~~~~~~~~eG~~L~~Y~Fd~yKskk~~~  143 (494)
                      ..++.+. +.|+..-+++..|...+.+++++.+ +........+-+.|-+..-.-.-.+|||..+..
T Consensus       111 ~v~e~tE~eirki~~sLv~~LHdnK~~~~siiF-Ei~i~e~LFRFfLEt~FYEyv~DERFKStdks~  176 (193)
T 3kr4_A          111 SVADLSEADMKRVVLSLVTMLHDNKLSKLTVVF-EINVDKNLFRFFLETLFYEYMTDERFKSTDKNV  176 (193)
T ss_dssp             SCSSCCHHHHHHHHHHHHHHHTTSCCSEEEEEE-CSCCCHHHHHHHHHHHHHHHCCCCTTCSTTCCC
T ss_pred             CHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             702289999999999999999867980899973-577755799999999997654224202577666


No 12 
>>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2; 2.00A {Haemophilus influenzae rd KW20} PDB: 3ic1_A (A:1-177,A:299-377)
Probab=92.47  E-value=0.33  Score=28.10  Aligned_cols=186  Identities=15%  Similarity=0.049  Sum_probs=98.8

Q ss_pred             HHHHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             9999864202125403029999999998-611332100001110001345898874202577850688620578865651
Q gi|254780392|r  176 KGVNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQP  254 (494)
Q Consensus       176 egv~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~~p  254 (494)
                      +-+.+.|+|++.|.--......++..++ |++.|+++++.+...      +..+-...+...|+.++..++.--.     
T Consensus         4 ~~i~~l~~lv~ips~s~~e~~~~~~i~~~l~~~G~~~~~~~~~~------~~~~~~~~~~~~~~i~l~~h~d~v~-----   72 (256)
T 3isz_A            4 KVVSLAQDLIRRPSISPNDEGCQQIIAERLEKLGFQIEWMPFND------TLNLWAKHGTSEPVIAFAGHTDVVP-----   72 (256)
T ss_dssp             HHHHHHHHHHTSCCBTTCCTTHHHHHHHHHHHTTCEEEECCBTT------BCEEEEEEESSSCEEEEEEECCBCC-----
T ss_pred             HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECC------EEEEEEECCCCCCEEEEECCCCCCC-----
T ss_conf             99999999947999798858999999999997799489998199------8899998689998799979888589-----


Q ss_pred             EEEEECCEEECCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHCCC--CCCEEEEEEECCCC--CCCCCCCHHHHHC
Q ss_conf             2663021120066310033332002-32211235689999999987087--87289986410266--8999747077630
Q gi|254780392|r  255 LAFIGKGVVFDTGGISIKPSHGMEE-MKGDLGGAAAVTGLLHVLAERKA--KINAIGVLALVENM--PGSSAQRPGDIVR  329 (494)
Q Consensus       255 iaLVGKGvTFDtGGislKp~~~M~~-Mk~DM~GaAav~g~~~aia~l~~--~v~v~~~~~~~EN~--~~~~a~~pgdvi~  329 (494)
                       .-.+...+||.-....+...-.-. .--|.+|.|+++.+++++.+.+.  +.+|+.+.-..|-.  .++..+       
T Consensus        73 -~~~~~~~~~~~~~~~~~~~~~~g~G~~D~k~g~a~~l~a~~~l~~~~~~~~~~i~~~f~~~EE~G~~~g~~~-------  144 (256)
T 3isz_A           73 -TGDENQWSSPPFSAEIIDGMLYGRGAADMKGSLAAMIVAAEEYVKANPNHKGTIALLITSDEEATAKDGTIH-------  144 (256)
T ss_dssp             -CCCGGGCSSCTTSCCEETTEEESTTTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSSCCSSSHHH-------
T ss_pred             -CCCCCCCCCCCCCEEEECCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHH-------
T ss_conf             -887643432233315743753010244443321014677898776404777337750000112110477224-------


Q ss_pred             CCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH-HCCCC
Q ss_conf             24895888634786640365236788752079613552111200235431776057870898999999998998-56971
Q gi|254780392|r  330 SMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLS-TGELL  408 (494)
Q Consensus       330 ~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ATLTGa~~~alG~~~~g~~~n~~~~~~~~~~a~~~-~ge~~  408 (494)
                                         +.+...  ....+++.+|..-.-.+-.       .....+..+.+.+.+.++.+. .|.+.
T Consensus       145 -------------------~~~~~~--~~~~~~d~~i~~e~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~g~~~  196 (256)
T 3isz_A          145 -------------------VVETLM--ARDEKITYCMVGEPSSAKN-------LGDVVKNGGKLLDSITSAIEETIGITP  196 (256)
T ss_dssp             -------------------HHHHHH--HTTCCCCEEEECCCCBSSS-------TTSEEEEETHHHHHHHHHHHHHHSCCC
T ss_pred             -------------------HHHHHH--HCCCCCEEEEEECCCCCCC-------CCCEEEEECHHHHHHHHHHHHHHCCCC
T ss_conf             -------------------456665--2467734999947888655-------774477714599999999999878997


No 13 
>>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M40, structural genomics; 2.04A {Bacillus cereus atcc 10987} (A:1-176,A:296-373)
Probab=91.92  E-value=0.42  Score=27.32  Aligned_cols=180  Identities=17%  Similarity=0.109  Sum_probs=108.1

Q ss_pred             HHHHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             9999864202125403029999999998-611332100001110001345898874202577850688620578865651
Q gi|254780392|r  176 KGVNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQP  254 (494)
Q Consensus       176 egv~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~~p  254 (494)
                      +-+.+.|+|++-|.---.-...++..++ |+..|++++.........-+-+.+++.=+|+..+...              
T Consensus         7 ~~i~~l~~lv~i~s~s~~e~~~a~~l~~~l~~~g~~~~~~~~~~~~~~~~~nv~a~~~g~~~~~~~--------------   72 (254)
T 3gb0_A            7 RLVNEFXELVQVDSETKFEAEICKVLTKKFTDLGVEVFEDDTXAVTGHGAGNLICTLPATKDGVDT--------------   72 (254)
T ss_dssp             HHHHHHHHHHTSCCBTTCCHHHHHHHHHHHHHTTCEEEECSCHHHHCCSSCCEEEEECCSSTTCCC--------------
T ss_pred             HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCE--------------
T ss_conf             999999999379998908999999999999977997999605433568874399998557899988--------------


Q ss_pred             EEEEECCEEECCCCCCCC-----------CCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEECCCCCCCCCC
Q ss_conf             266302112006631003-----------333200232211235689999999987087-87289986410266899974
Q gi|254780392|r  255 LAFIGKGVVFDTGGISIK-----------PSHGMEEMKGDLGGAAAVTGLLHVLAERKA-KINAIGVLALVENMPGSSAQ  322 (494)
Q Consensus       255 iaLVGKGvTFDtGGislK-----------p~~~M~~Mk~DM~GaAav~g~~~aia~l~~-~v~v~~~~~~~EN~~~~~a~  322 (494)
                      +.+.+--.|...+.-..-           .+.+=.+|   .+|.|+.+.+++++.+... +.+|..+.-..|-.=     
T Consensus        73 il~~~h~D~v~~~~~~~~~~~~~~~~~~~~grG~~D~---kgg~a~~l~a~~~l~~~~~~~~~i~~~~~~dEE~G-----  144 (254)
T 3gb0_A           73 IYFTSHXDTVVPGNGIKPSIKDGYIVSDGTTILGADD---KAGLASXFEAIRVLKEKNIPHGTIEFIITVGEESG-----  144 (254)
T ss_dssp             EEEEEECCBCSSCSSCCCEEETTEEECCSSSCCCHHH---HHHHHHHHHHHHHHHHTTCCCCCEEEEEESCGGGT-----
T ss_pred             EEEECCCCCCCCCCEEEEECCCCEEECCCCEEEECCC---CCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC-----
T ss_conf             9984675525787503320123338626734653157---63111111110122236764552799875135456-----


Q ss_pred             CHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf             70776302489588863478664036523678875207961355211120023543177605787089899999999899
Q gi|254780392|r  323 RPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGL  402 (494)
Q Consensus       323 ~pgdvi~~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ATLTGa~~~alG~~~~g~~~n~~~~~~~~~~a~~  402 (494)
                                                +-.+..|.....+|+..|.+=.-        +... .+...|.++.+.+.++.+
T Consensus       145 --------------------------~~G~~~~~~~~~~~d~~i~~d~~--------~~~~-~~~~~~~~~~~~~~~~~~  189 (254)
T 3gb0_A          145 --------------------------LVGAKALDRERITAKYGYALDSD--------GKVG-EIVVAGDHVVEVAKRAAE  189 (254)
T ss_dssp             --------------------------SHHHHHSCGGGCCCSEEEEEEEC--------SCTT-EEEEETCHHHHHHHHHHH
T ss_pred             --------------------------CCCHHHHHHHHCCCCCEEEEEEC--------CCCC-CCEEECHHHHHHHHHHHH
T ss_conf             --------------------------52058888652012311323203--------5423-321210489999999999


Q ss_pred             HHCCCCCCCC
Q ss_conf             8569717677
Q gi|254780392|r  403 STGELLWRMP  412 (494)
Q Consensus       403 ~~ge~~w~lP  412 (494)
                      ..|...=.++
T Consensus       190 ~~g~~~~~~~  199 (254)
T 3gb0_A          190 KIGRTPSLHQ  199 (254)
T ss_dssp             HTTCCCEEEE
T ss_pred             HHCCCCEEEE
T ss_conf             8599975866


No 14 
>>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural genomics, PSI-2; HET: BGC; 1.90A {Streptococcus pneumoniae TIGR4} (A:1-214,A:440-481)
Probab=91.78  E-value=0.99  Score=24.72  Aligned_cols=120  Identities=13%  Similarity=0.194  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHCCCCCEEECHH---HHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
Q ss_conf             999998642021254030299---99999998-61133210000111000134589887420257785068862057886
Q gi|254780392|r  175 VKGVNLARDIINEPANVLGTD---EFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDS  250 (494)
Q Consensus       175 aegv~lARDLvN~PaN~ltP~---~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~  250 (494)
                      .+-+.+.|+|++.|.---.+.   ..++...+ |++.|+++++.+..                   ...-++.++++.++
T Consensus        44 ~~~~~~l~~Lv~ips~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~-------------------~~~nvia~~~g~~~  104 (256)
T 2pok_A           44 QHYFEVLRTLISKKSVFAQQVGLKEVANYLGEIFKRVGAEVEIDESY-------------------TAPFVMAHFKSSRP  104 (256)
T ss_dssp             HHHHHHHHHHHHSCCCGGGCTTHHHHHHHHHHHHHHTTCEEEEECSS-------------------SSCEEEEEECCSST
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECC-------------------CCCEEEEEECCCCC
T ss_conf             99999999996799979670259999999999999779979999659-------------------99889999568889


Q ss_pred             CCCCEEEEECCEEECCC--------CCCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECC
Q ss_conf             56512663021120066--------310033------3320023221123568999999998708--7872899864102
Q gi|254780392|r  251 EEQPLAFIGKGVVFDTG--------GISIKP------SHGMEEMKGDLGGAAAVTGLLHVLAERK--AKINAIGVLALVE  314 (494)
Q Consensus       251 ~~~piaLVGKGvTFDtG--------GislKp------~~~M~~Mk~DM~GaAav~g~~~aia~l~--~~v~v~~~~~~~E  314 (494)
                      +.++|+|.+--=|-+-+        -+.+..      +.|..   -|.+|.|+.+.+++++.+.+  ++.+|+.+....|
T Consensus       105 ~~~~I~l~aH~Dtvp~~~~~~~~~~p~~~~~~~~~i~GrG~~---D~kggva~~l~a~~~L~~~~~~~~~~I~~i~~~~E  181 (256)
T 2pok_A          105 DAKTLIFYNHYDTVPADGDQVWTEDPFTLSVRNGFMYGRGVD---DDKGHITARLSALRKYMQHHDDLPVNISFIMEGAE  181 (256)
T ss_dssp             TCCEEEEEEECCCCCSCSSCCCSSCTTSCEEETTEEESTTTT---TTHHHHHHHHHHHHHHHHTCSSCSSEEEEEEESCG
T ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCEEEECCCC---CCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf             998899977707518999866658995489979999935512---13242389999999977522464431577521343


Q ss_pred             CC
Q ss_conf             66
Q gi|254780392|r  315 NM  316 (494)
Q Consensus       315 N~  316 (494)
                      -.
T Consensus       182 E~  183 (256)
T 2pok_A          182 ES  183 (256)
T ss_dssp             GG
T ss_pred             CC
T ss_conf             33


No 15 
>>1fno_A Peptidase T; metallo peptidase, protease, zinc, hydrolase; 2.40A {Salmonella typhimurium} (A:1-205,A:328-417)
Probab=90.81  E-value=1.2  Score=24.07  Aligned_cols=192  Identities=10%  Similarity=0.054  Sum_probs=110.9

Q ss_pred             HHHHHHHCCCCCEEE--------CHHH--HHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECC
Q ss_conf             998642021254030--------2999--9999998-6113321000011100013458988742025778506886205
Q gi|254780392|r  178 VNLARDIINEPANVL--------GTDE--FCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWE  246 (494)
Q Consensus       178 v~lARDLvN~PaN~l--------tP~~--lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~  246 (494)
                      +.+.++|++.|+---        ++.+  .++..++ |++.|++++.++...-..    +.+.-..+...|.-++..++.
T Consensus         5 ~~~l~~lv~i~S~s~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~v~~i~~~g~~~----~~~~~~~~~~~~~~~~~~H~D   80 (295)
T 1fno_A            5 LERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEEXGLVNITLSEKGTLX----ATLPANVEGDIPAIGFISHVD   80 (295)
T ss_dssp             HHHHHHHHTSCCBCCSSCSSSSSSHHHHHHHHHHHHHHHHHTCEEEEECTTCCEE----EEECCSSCSCCCCEEEEEECC
T ss_pred             HHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCEEE----EEECCCCCCCCCEEEEECCCC
T ss_conf             9999987630571698767898987899999999999996799389988996499----998145789998899989656


Q ss_pred             CCC----CCCCCEEEEE---------------CCEEECCCCCCCCC----CCCCHHHHHHHHHH-HHHHHHHHHHHHCC-
Q ss_conf             788----6565126630---------------21120066310033----33200232211235-68999999998708-
Q gi|254780392|r  247 GGD----SEEQPLAFIG---------------KGVVFDTGGISIKP----SHGMEEMKGDLGGA-AAVTGLLHVLAERK-  301 (494)
Q Consensus       247 g~~----~~~~piaLVG---------------KGvTFDtGGislKp----~~~M~~Mk~DM~Ga-Aav~g~~~aia~l~-  301 (494)
                      ..+    ....+..+.+               -..++|.=..-++.    +.+...|+.||.+. ++++-+++++.+.+ 
T Consensus        81 tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~dp~~~~~~~~~~~grg~~~~~~D~~~giaa~l~a~~~l~~~~~  160 (295)
T 1fno_A           81 TSPDFSGKNVNPQIVENYRGGDIALGIGDEVLSPVXFPVLHQLLGQTLITTDGKTLLGADDKAGVAEIXTALAVLKGNPI  160 (295)
T ss_dssp             BCTTSCCSSCCCEEETTCCSSCEECSSSSCEECTTTCGGGGGCTTSCEEECCSSSCCCHHHHHHHHHHHHHHHHHHSSSC
T ss_pred             CCCCCCCCCCCCCEEECCCCCCEECCCCCCCCCHHHCCCCCCEECCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             28999987769735454568600035432310221166421212464898367302467647899999999999985799


Q ss_pred             CCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCCHHHHHHCCC
Q ss_conf             78728998641026689997470776302489588863478664036523678875207961355211120023543177
Q gi|254780392|r  302 AKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGN  381 (494)
Q Consensus       302 ~~v~v~~~~~~~EN~~~~~a~~pgdvi~~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ATLTGa~~~alG~  381 (494)
                      ++.+|+.+.-..|---+.-                               +-.|+ ++++++.-+.+-+           
T Consensus       161 ~~~~i~~~~~~~EE~G~~G-------------------------------a~~~~-~~~~~~~~~~id~-----------  197 (295)
T 1fno_A          161 PHGDIKVAFTPDEEVGKGA-------------------------------KHFDV-EAFGAQWAYTVDG-----------  197 (295)
T ss_dssp             CCCCEEEEEESCGGGTCTT-------------------------------TTCCH-HHHCCSEEEECCC-----------
T ss_pred             CCCCEEEEEEEECCCCCHH-------------------------------HHHHH-HCCCCCEEEEEEC-----------
T ss_conf             8886899987401147428-------------------------------88876-3569868999851-----------


Q ss_pred             CCEEEE-ECCHHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf             605787-08989999999989985697176776867
Q gi|254780392|r  382 IYAGLF-ANNDVLAEQLLSSGLSTGELLWRMPMNEE  416 (494)
Q Consensus       382 ~~~g~~-~n~~~~~~~~~~a~~~~ge~~w~lPl~~~  416 (494)
                      ..++-. ..+..+.+.+.++.+..|.+++.++..-.
T Consensus       198 ~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~  233 (295)
T 1fno_A          198 GGVGELEFEHPHILDIAQQAXRDCHITPEXKPIRGG  233 (295)
T ss_dssp             CSTTBEECTSTHHHHHHHHHHHHTTCCCBCCCBSSC
T ss_pred             CCCCCCEECCHHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf             588751348989999999999983999389987748


No 16 
>>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, substrate specificity, metallopeptidase M42, hydrolase; 2.70A {Streptococcus pneumoniae R6} (A:1-70,A:166-355)
Probab=89.34  E-value=1.6  Score=23.26  Aligned_cols=109  Identities=11%  Similarity=0.071  Sum_probs=64.8

Q ss_pred             HHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEE
Q ss_conf             99864202125403029999999998-61133210000111000134589887420257785068862057886565126
Q gi|254780392|r  178 VNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQPLA  256 (494)
Q Consensus       178 v~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~~pia  256 (494)
                      +.+.|+|.+.|.---.=..-++..++ |++.|+++++-.        +|..+++=.|+              +++.++|+
T Consensus         6 ~~~~~~l~~~p~~s~~e~~~~~~~~~~l~~~g~~~~~~~--------~~~~~~~~~~~--------------~~~~~~i~   63 (260)
T 3kl9_A            6 FSKIKEVTELAAVSGHEAPVRAYLREKLTPHVDEVVTDG--------LGGIFGIKHSE--------------AVDAPRVL   63 (260)
T ss_dssp             HHHHHHHHTSCCBTTCCHHHHHHHHHHHGGGSSEEEECT--------TSCEEEEECCC--------------STTCCEEE
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEEC--------CCCEEEEECCC--------------CCCCCEEE
T ss_conf             999999981999898879999999999997299899957--------86589997788--------------89998699


Q ss_pred             EEECCEEECC-CCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
Q ss_conf             6302112006-6310033----332002322112356899999999870878728998641026
Q gi|254780392|r  257 FIGKGVVFDT-GGISIKP----SHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVEN  315 (494)
Q Consensus       257 LVGKGvTFDt-GGislKp----~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN  315 (494)
                      |.+-   +|+ ....++.    +.+.    -|.+|-|+++.+++++.+.+++.+|+.+.-..|=
T Consensus        64 ~~~h---~D~p~~~~~~~g~i~g~g~----D~k~gva~~l~~~~~l~~~~~~~~i~~~~~~~EE  120 (260)
T 3kl9_A           64 VASH---MDESAILTANEKNIISKAW----DNRYGVLMVSELAEALSGQKLGNELYLGSNVQEE  120 (260)
T ss_dssp             EEEE---CCBCCEECTTSSEEEESCH----HHHHHHHHHHHHHHHHSSCCCSSEEEEEEESCCT
T ss_pred             EECC---CCCEEEEECCCCEEECCHH----CCHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEE
T ss_conf             9856---6760377413325741410----1415565548999999744478723762323687


No 17 
>>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} (A:1-183,A:343-393)
Probab=88.60  E-value=1.8  Score=22.92  Aligned_cols=121  Identities=16%  Similarity=0.143  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHCCCCCEEECHHH---HHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
Q ss_conf             9999986420212540302999---9999998-61133210000111000134589887420257785068862057886
Q gi|254780392|r  175 VKGVNLARDIINEPANVLGTDE---FCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDS  250 (494)
Q Consensus       175 aegv~lARDLvN~PaN~ltP~~---lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~  250 (494)
                      .+-+.+.++|++.|+---+++.   .++..++ |++.|++++..+.....                ....++..+.+  +
T Consensus        19 ~~~~~~l~~lv~i~s~s~~~~g~~~~a~~l~~~l~~lG~~v~~~~~~~~~----------------~~~~~~~~~~~--~   80 (234)
T 1cg2_A           19 PAVIKTLEKLVNIETGTGDAEGIAAAGNFLEAELKNLGFTVTRSKSAGLV----------------VGDNIVGKIKG--R   80 (234)
T ss_dssp             HHHHHHHHHHHTSCCBTTCHHHHHHHHHHHHHHHHHTTCEEEEEECSTTC----------------CSEEEEEEEEC--S
T ss_pred             HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC----------------CCCEEEEEECC--C
T ss_conf             99999999995899989798999999999999999789979997468876----------------67779999889--9


Q ss_pred             CCCCEEEEECCEE-ECCCCCCCCC---------CCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCCEEEEEEECCCC
Q ss_conf             5651266302112-0066310033---------33200232211235689999999987087--87289986410266
Q gi|254780392|r  251 EEQPLAFIGKGVV-FDTGGISIKP---------SHGMEEMKGDLGGAAAVTGLLHVLAERKA--KINAIGVLALVENM  316 (494)
Q Consensus       251 ~~~piaLVGKGvT-FDtGGislKp---------~~~M~~Mk~DM~GaAav~g~~~aia~l~~--~v~v~~~~~~~EN~  316 (494)
                      ..++|.|.|---| |..|.....|         +.+-.+|   .+|-++.+.+++++.+.+.  +.+|+.+.-..|-.
T Consensus        81 ~~~~ill~~H~DtV~~~~~~~~~p~~~~~~~~~GpG~~D~---K~Gia~~L~al~aL~~~g~~~~~~i~~l~~~dEE~  155 (234)
T 1cg2_A           81 GGKNLLLMSHMDTVYLKGILAKAPFRVEGDKAYGPGIADD---KGGNAVILHTLKLLKEYGVRDYGTITVLFNTDEEK  155 (234)
T ss_dssp             SCCCEEEEEECCBSCCTTHHHHSCCEEETTEEECTTTTTT---HHHHHHHHHHHHHHHHTTCCCSSEEEEEEESCGGG
T ss_pred             CCCEEEEEECCCCCCCCCCCCCCCEEEECCCEEEEECCCC---CHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCC
T ss_conf             9985999913673578876666530343474124421454---21277888777776530134564203213345656


No 18 
>>1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown function; HET: MSE; 1.90A {Bacillus subtilis} (A:1-73,A:168-373)
Probab=88.10  E-value=1.7  Score=23.11  Aligned_cols=178  Identities=12%  Similarity=0.115  Sum_probs=104.0

Q ss_pred             HHHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCC--CCCC
Q ss_conf             999864202125403029999999998-6113321000011100013458988742025778506886205788--6565
Q gi|254780392|r  177 GVNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGD--SEEQ  253 (494)
Q Consensus       177 gv~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~--~~~~  253 (494)
                      -+.+.|+|.+.|.--..=...++...+ |++.|+++++-        .+|.+.++=.|....|++.+.-+-=.+  ....
T Consensus         9 ~~~~~~~l~~~p~~s~~e~~~~~~~~~~l~~~g~~~~~~--------~~g~~~~~~~~~~~~~~i~~~~h~D~p~~~~~~   80 (279)
T 1vhe_A            9 TLTXLKDLTDAKGIPGNEREVRQVXKSYIEPFADEVTTD--------RLGSLIAKKTGAENGPKIXIAGHLDEEFTVXNN   80 (279)
T ss_dssp             HHHHHHHHHHSCCCTTCCHHHHHHHHHHHGGGCSEEEEC--------TTCCEEEEEESSTTSCEEEEEEECCCCCEECSS
T ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEC--------CCCEEEEEECCCCCCCEEEEEEECCCCEEEECC
T ss_conf             999999997499989668999999999999749989990--------785699998379999769999655862156505


Q ss_pred             CEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCC
Q ss_conf             12663021120066310033332002322112356899999999870878728998641026689997470776302489
Q gi|254780392|r  254 PLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSG  333 (494)
Q Consensus       254 piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN~~~~~a~~pgdvi~~~~G  333 (494)
                      -=-+.|.|                .+   |.+|.|+++.+++++.+.+++.+++.+.-..|=.-++.             
T Consensus        81 ~g~i~g~g----------------~D---~k~gva~~L~a~~~~~~~~~~~~i~~~~~~~EE~g~~g-------------  128 (279)
T 1vhe_A           81 EKFLLAKA----------------WD---NRIGCAIAIDVLRNLQNTDHPNIVYGVGTVQEEVGLRG-------------  128 (279)
T ss_dssp             TTEEEETT----------------HH---HHHHHHHHHHHHHHHHTSCCSSEEEEEEESCCTTTSHH-------------
T ss_pred             CCCCCCCC----------------CC---CCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEECCC-------------
T ss_conf             55332354----------------31---10035788999987652046787301122201130343-------------


Q ss_pred             CEEEEECCCCCCEEEEEHHHHHHHHHCCCCE--EEEECCCCH-HH------HHHCCCCCEEEE-----ECCHHHHHHHHH
Q ss_conf             5888634786640365236788752079613--552111200-23------543177605787-----089899999999
Q gi|254780392|r  334 QTIEVINTDAEGRLILADALWYCRTHYNPHL--MIDLATLTG-AM------VVSLGNIYAGLF-----ANNDVLAEQLLS  399 (494)
Q Consensus       334 ~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~--iid~ATLTG-a~------~~alG~~~~g~~-----~n~~~~~~~~~~  399 (494)
                                        +..|.. .+.++.  .+|+..... ..      ....|+.....+     ..+..+...+..
T Consensus       129 ------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (279)
T 1vhe_A          129 ------------------AKTAAH-TIQPDIAFGVDVGIAGDTPGISEKEAQSKXGKGPQIIVYDASXVSHKGLRDAVVA  189 (279)
T ss_dssp             ------------------HHHHHH-HHCCSEEEEEEEEECCCSTTCCTTTCCCCTTSCCEEEEEETTEECCHHHHHHHHH
T ss_pred             ------------------CCCEEE-EECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHH
T ss_conf             ------------------431111-2110244434344566665554420133322101221024765689899999999


Q ss_pred             HHHHHCCCCCCCCC
Q ss_conf             89985697176776
Q gi|254780392|r  400 SGLSTGELLWRMPM  413 (494)
Q Consensus       400 a~~~~ge~~w~lPl  413 (494)
                      +.......++....
T Consensus       190 ~~~~~~~~~~~~~~  203 (279)
T 1vhe_A          190 TAEEAGIPYQFDAI  203 (279)
T ss_dssp             HHHHHTCCCEEEEE
T ss_pred             HHHHCCCCCCEECC
T ss_conf             99980999625427


No 19 
>>2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Haemophilus somnus 129PT} (A:1-172,A:445-487)
Probab=87.81  E-value=2  Score=22.58  Aligned_cols=126  Identities=13%  Similarity=0.066  Sum_probs=77.3

Q ss_pred             HHHHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCC-----
Q ss_conf             9999864202125403029999999998-6113321000011100013458988742025778506886205788-----
Q gi|254780392|r  176 KGVNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGD-----  249 (494)
Q Consensus       176 egv~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~-----  249 (494)
                      +-+.+.|+|+..|+---....+++..++ |++.|++++..+-..-..    -+...+.+...++.++.-++-.-.     
T Consensus        12 e~i~~L~~LI~ipSvS~~e~~~a~~l~~~l~~lG~~~e~~~~~~~~~----~~~~~~~~~~~~~i~l~~h~D~v~~~~~~   87 (215)
T 2qyv_A           12 LLWQWFDQICAIPHPSYKEEQLAQFIINWAKTKGFFAERDEVGNVLI----RKPATVGXENRKPVVLQAHLDXVPQANEG   87 (215)
T ss_dssp             HHHHHHHHHHHSCCBTTCCHHHHHHHHHHHHHTTCEEEECTTCCEEE----EECCCTTCTTBCCEEEEEESCBCCC----
T ss_pred             HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCEEEE----EECCCCCCCCCCEEEEEEEECCCCCCCCC
T ss_conf             99999999917999996899999999999997899899937875999----98677888999989998422517889987


Q ss_pred             ----CCCCCEEE-EECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEECCCCC
Q ss_conf             ----65651266-302112006631003333200232211235689999999987087-872899864102668
Q gi|254780392|r  250 ----SEEQPLAF-IGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKA-KINAIGVLALVENMP  317 (494)
Q Consensus       250 ----~~~~piaL-VGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~-~v~v~~~~~~~EN~~  317 (494)
                          -...|+.+ +.=|..|         +.|..+||   +|.|+++-+++++.+.+. +.+|+.++...|-.=
T Consensus        88 ~~~~w~~~Pf~~~~~d~~i~---------GrG~~D~K---g~~a~~l~a~~~lk~~~~~~~~I~~~f~~dEE~G  149 (215)
T 2qyv_A           88 TNHNFDQDPILPYIDGDWVK---------AKGTTLGA---DNGIGXASALAVLESNDIAHPELEVLLTXTEERG  149 (215)
T ss_dssp             ------CCCCCEEECSSEEE---------ETTBCCCH---HHHHHHHHHHHHHHCSSSCCSSEEEEEESCTTTT
T ss_pred             CCCCCCCCCCEEEEECCEEE---------CCCCCCCC---CCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCC
T ss_conf             74546679815798577998---------68853788---7625554454443311457887069999944677


No 20 
>>1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.15A {Shigella flexneri 2a str} (A:1-68,A:154-348)
Probab=85.91  E-value=1.6  Score=23.32  Aligned_cols=174  Identities=14%  Similarity=0.060  Sum_probs=101.2

Q ss_pred             HHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEE
Q ss_conf             99864202125403029999999998-61133210000111000134589887420257785068862057886565126
Q gi|254780392|r  178 VNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQPLA  256 (494)
Q Consensus       178 v~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~~pia  256 (494)
                      +.+-|+|++.|+---.....++...+ +++.|+++++.+        +|.++              .++.|  ++.++|+
T Consensus         6 ~~~l~~l~~~~s~s~~~~~~~~~~~~~~~~~g~~~~~~~--------~~~~~--------------~~~~~--~~~~~i~   61 (263)
T 1ylo_A            6 LSLLKALSEADAIASSEQEVRQILLEEAARLQKEVRFDG--------LGSVL--------------IRLNE--STGPKVX   61 (263)
T ss_dssp             HHHHHHHHHSCCBTTBCHHHHHHHHHHHHHTTCCEEECT--------TCCEE--------------EECCC--CSSCEEE
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEECC--------CCEEE--------------EEECC--CCCCEEE
T ss_conf             999999972999598779999999999997399899968--------96299--------------99899--9998699


Q ss_pred             EEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCEE
Q ss_conf             63021120066310033332002322112356899999999870878728998641026689997470776302489588
Q gi|254780392|r  257 FIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTI  336 (494)
Q Consensus       257 LVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN~~~~~a~~pgdvi~~~~G~tv  336 (494)
                      |.|-   +||=..++....-...=--|-+|.|+++.+++.+++.+++.+|+.+.--.|---.                  
T Consensus        62 ~~~H---~D~~~~~~~~~~~~~GA~Dn~sGva~lLe~ar~l~~~~~~~~i~fv~~~~EE~g~------------------  120 (263)
T 1ylo_A           62 ICAH---XDETFQVLPHQRVXGKAFDDRLSCYLLVTLLRELHDAELPAEVWLVASSSEEVGL------------------  120 (263)
T ss_dssp             EEEE---CCCCCEEETTTEEEETTHHHHHHHHHHHHHHHHHTTCCCSSEEEEEEESCCTTSS------------------
T ss_pred             EEEC---CCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCC------------------
T ss_conf             9962---7750256514330122234643046777778987622456660430000001354------------------


Q ss_pred             EEECCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCCHHH--------HHHCCCCCEEEE-----ECCHHHHHHHHHHHHH
Q ss_conf             863478664036523678875207961355211120023--------543177605787-----0898999999998998
Q gi|254780392|r  337 EVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTGAM--------VVSLGNIYAGLF-----ANNDVLAEQLLSSGLS  403 (494)
Q Consensus       337 ei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ATLTGa~--------~~alG~~~~g~~-----~n~~~~~~~~~~a~~~  403 (494)
                                   ..+-.|++ ...++..+.+....-.-        ...+|....-.+     ..+..+.+.+.+..+.
T Consensus       121 -------------~Gs~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  186 (263)
T 1ylo_A          121 -------------RGGQTATR-AVSPDVAIVLDTACWAKNFDYGAANHRQIGNGPXLVLSDKSLIAPPKLTAWIETVAAE  186 (263)
T ss_dssp             -------------HHHHHHHH-HHCCSEEEEECCCCCSSTTCCSTTCCCCTTSCCEEEEECSSCBCCHHHHHHHHHHHHH
T ss_pred             -------------EEECCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHCCCHHHHHH
T ss_conf             -------------11000103-4431012121110045531056775432023220232167666780331120147998


Q ss_pred             HCCCCCC
Q ss_conf             5697176
Q gi|254780392|r  404 TGELLWR  410 (494)
Q Consensus       404 ~ge~~w~  410 (494)
                      .+-..+.
T Consensus       187 ~~~~~~~  193 (263)
T 1ylo_A          187 IGVPLQA  193 (263)
T ss_dssp             HTCCCEE
T ss_pred             HCCCCEE
T ss_conf             3999417


No 21 
>>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp} (A:1-224,A:345-445)
Probab=85.16  E-value=2.5  Score=21.84  Aligned_cols=183  Identities=13%  Similarity=-0.022  Sum_probs=97.3

Q ss_pred             HHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEC-CCCCCCCCCE
Q ss_conf             99864202125403029999999998-611332100001110001345898874202577850688620-5788656512
Q gi|254780392|r  178 VNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKW-EGGDSEEQPL  255 (494)
Q Consensus       178 v~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y-~g~~~~~~pi  255 (494)
                      +.+-|+|+..|.--..-...++..++ |++.|++++..+...-.   -..+++.=+|+...|.++..-. -.-+.     
T Consensus        52 ~~~~~~L~~~pe~s~~E~~t~~~i~~~L~~~G~~~~~~~~~~~~---~~~v~a~~~~~~~~~~i~l~ah~D~vp~-----  123 (325)
T 3io1_A           52 ALGRDVIDADSRXGLPDEETLARAFERAREQGAPERWLPAFEGG---FAGVVATLDTGRPGPTLAFRVDXDALDL-----  123 (325)
T ss_dssp             EEGGGTSCSTTCCSCCCHHHHHHHHHHHHTTTCCTTTGGGGTTT---CCCEEEEEECSSCCCEEEEEEECCCCCC-----
T ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CEEEEEEECCCCCCCEEEEEEECCCCCC-----
T ss_conf             74355445322236653100000000111235663223344677---5279999818898988999964352555-----


Q ss_pred             EEEECCEEECCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHC--CCCCCEEEEEEECCCCCCCCCCCHHHHHCCC
Q ss_conf             6630211200663100333--32002322112356899999999870--8787289986410266899974707763024
Q gi|254780392|r  256 AFIGKGVVFDTGGISIKPS--HGMEEMKGDLGGAAAVTGLLHVLAER--KAKINAIGVLALVENMPGSSAQRPGDIVRSM  331 (494)
Q Consensus       256 aLVGKGvTFDtGGislKp~--~~M~~Mk~DM~GaAav~g~~~aia~l--~~~v~v~~~~~~~EN~~~~~a~~pgdvi~~~  331 (494)
                       --..+.++|.-...++..  .+| ..-.+.++.|+.+++++++.++  +++.+|+.+.-..|-..++            
T Consensus       124 -~e~~~~~~~p~~~~~~~~~~~g~-ga~d~kg~~a~~l~a~~~L~~~~~~~~g~i~l~f~~~EE~g~g------------  189 (325)
T 3io1_A          124 -NEQHDDSHRPHRDHFASCNAGXX-HACGHDGHTAIGLGLAHVLKQYAAQLNGVIKLIFQPAEEGTRG------------  189 (325)
T ss_dssp             ---------------------------CTTCTHHHHHHHHHHHHHHTGGGCCSEEEEEEESCTTTTCH------------
T ss_pred             -CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCC------------
T ss_conf             -11478887764323466788766-6424332045667888876302346786798610345411111------------


Q ss_pred             CCCEEEEECCCCCCEEEEEHHHHHHHHH--CCCCEEEEECCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHH-CCC
Q ss_conf             8958886347866403652367887520--796135521112002354317760578708989999999989985-697
Q gi|254780392|r  332 SGQTIEVINTDAEGRLILADALWYCRTH--YNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLST-GEL  407 (494)
Q Consensus       332 ~G~tvei~nTDAEGRlvLaD~l~ya~~~--~~p~~iid~ATLTGa~~~alG~~~~g~~~n~~~~~~~~~~a~~~~-ge~  407 (494)
                                          +..+....  -+++.++-+=.-.+     .....-|.-+-|+++.+.+.++.+.. |+.
T Consensus       190 --------------------g~~~~~~~~~~~~d~~~~~h~~~~-----~~~g~ig~~ggd~~~~~~~~~~~~~~~g~~  243 (325)
T 3io1_A          190 --------------------ARAXVAAGVVDDVDYFTAIHIGTG-----VPAGTVVCGGDSPAWVDYLREQAARVPGVQ  243 (325)
T ss_dssp             --------------------HHHHHHTTTTTTCSEEEEEEEEEE-----EETTBEESCCCCHHHHHHHHHHHHHSTTCC
T ss_pred             --------------------HHHHHHHCCCCCCCEEEEEECCCC-----CCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             --------------------799997276655642566401022-----233210011229999999999999850841


No 22 
>>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp} (A:1-167,A:314-364)
Probab=85.12  E-value=2.7  Score=21.64  Aligned_cols=125  Identities=14%  Similarity=0.102  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHCCCCCEEECHH---HHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
Q ss_conf             999998642021254030299---99999998-61133210000111000134589887420257785068862057886
Q gi|254780392|r  175 VKGVNLARDIINEPANVLGTD---EFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDS  250 (494)
Q Consensus       175 aegv~lARDLvN~PaN~ltP~---~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~  250 (494)
                      .+-+.+.|+|++.|..--.+.   ..++..++ |++.|+++++.+..      .+..+....+...|+-++.-+|-.-.-
T Consensus         6 e~~iell~~Lv~ipS~S~~~~~~~~~a~~l~~~L~~~G~~v~~~~~~------~~~~~~~~~~~~~p~I~l~~H~Dtv~w   79 (218)
T 2rb7_A            6 QHIVELTSDLIRFPSXHSRPEQISRCAGFIXDWCAQNGIHAERXDHD------GIPSVXVLPEKGRAGLLLXAHIDVVDA   79 (218)
T ss_dssp             HHHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHHTTCCCEEEEET------TEEEEEECSBTTEEEEEEEEECCCCCC
T ss_pred             HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCC------CEEEEEEEECCCCCEEEEEEECCCCCC
T ss_conf             99999999995799989584789999999999999779979998059------977999981799985999830461575


Q ss_pred             CCCCE-EEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------CCCCCCEEEEEEECCCCC
Q ss_conf             56512-66302112006631003333200232211235689999999987-------087872899864102668
Q gi|254780392|r  251 EEQPL-AFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAE-------RKAKINAIGVLALVENMP  317 (494)
Q Consensus       251 ~~~pi-aLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~-------l~~~v~v~~~~~~~EN~~  317 (494)
                      ...|. ..+-.|..|         +.|-.+||   +|-++++.+++++.+       ..++.+|+.+.-..|-.=
T Consensus        80 ~~~p~~~~~~d~~l~---------GrG~aD~K---gg~a~~l~al~~l~~~~~~~~~~~~~~~I~~if~~dEE~G  142 (218)
T 2rb7_A           80 EDDLFVPRVENDRLY---------GRGANDDK---YAVALGLVXFRDRLNALKAAGRSQKDXALGLLITGDEEIG  142 (218)
T ss_dssp             CGGGGSCEEETTEEE---------STTTTTTH---HHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEEESCGGGT
T ss_pred             CCCCCCCCCCCCCCC---------CCCCCCCC---CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCC
T ss_conf             555553222233211---------12234555---1167788889988877775057788965999999624555


No 23 
>>2gre_A Deblocking aminopeptidase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 2.65A {Bacillus cereus} (A:1-72,A:171-349)
Probab=84.46  E-value=2.9  Score=21.44  Aligned_cols=113  Identities=16%  Similarity=0.177  Sum_probs=73.6

Q ss_pred             HHHHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             9999864202125403029999999998-611332100001110001345898874202577850688620578865651
Q gi|254780392|r  176 KGVNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQP  254 (494)
Q Consensus       176 egv~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~~p  254 (494)
                      +-+.+.|+|++.|..-..-...++..++ |++.|++|+...        +|.+++              .+.+. .+.++
T Consensus         7 ~~~~~~~~l~~~~s~s~~e~~~~~~~~~~l~~~g~~~~~~~--------~~~~~~--------------~~~~~-~~~~~   63 (251)
T 2gre_A            7 ETXELIKELVSIPSPSGNTAKIINFIENYVSEWNVETKRNN--------KGALIL--------------TVKGK-NDAQH   63 (251)
T ss_dssp             HHHHHHHHHHTSCCBTTCCHHHHHHHHHHTTTSSSEEEECS--------SSCEEE--------------EECCS-EEEEE
T ss_pred             HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEC--------CCCEEE--------------EECCC-CCCCE
T ss_conf             99999999973999796899999999999997699899977--------982999--------------98788-99975


Q ss_pred             EEEEECC--EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC--CCCCCEEEEEEECCCC
Q ss_conf             2663021--120066310033332002322112356899999999870--8787289986410266
Q gi|254780392|r  255 LAFIGKG--VVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAER--KAKINAIGVLALVENM  316 (494)
Q Consensus       255 iaLVGKG--vTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l--~~~v~v~~~~~~~EN~  316 (494)
                      |+|.|-=  |.++.-+=.|.++. . +   |.+|.|+++-+++.+.+.  +++.+|+.+.-..|-.
T Consensus        64 i~~~~h~D~v~~~~~~~~i~ggg-~-D---~k~G~a~~L~~ar~L~~~~~~~~~~I~~~~~~~EE~  124 (251)
T 2gre_A           64 RLLTAHVDTRVQITESGYIKSRH-L-D---DKVSVAILLKLIKRLQDENVTLPYTTHFLISNNEEI  124 (251)
T ss_dssp             EEEEEECCBCCEECTTSEEEESC-C-T---THHHHHHHHHHHHHHHHHTCCCSEEEEEEEESCC--
T ss_pred             EEEEECCCCEEEEEECCCCEEEC-C-C---CCCHHHHHHHHHHHHHHHCCCCCCCCEECCCEEEEE
T ss_conf             99983344389999505300102-3-4---532068899999975652445456512112035665


No 24 
>>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural genomics, PSI, protein structure initiative; 2.40A {Bacillus subtilis} (A:1-195,A:324-404)
Probab=81.62  E-value=3.7  Score=20.69  Aligned_cols=128  Identities=18%  Similarity=0.244  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEE-EECCCCCCCC
Q ss_conf             99999864202125403029999999998-611332100001110001345898874202577850688-6205788656
Q gi|254780392|r  175 VKGVNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAV-MKWEGGDSEE  252 (494)
Q Consensus       175 aegv~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~-l~Y~g~~~~~  252 (494)
                      .+-+.+.|+|++.|.---.....++.+.+ |++.|++++..+.      +-+.+.++-.|....|.+.. -++-.-+..+
T Consensus        32 ~~~i~~~~~L~~iPs~s~~E~~ta~~i~~~L~~~G~~v~~~~~------~~~~v~~~~~g~~~~~~I~l~ah~D~vp~~~  105 (276)
T 1ysj_A           32 TRLINXRRDLHEHPELSFQEVETTKKIRRWLEEEQIEILDVPQ------LKTGVIAEIKGREDGPVIAIRADIDALPIQE  105 (276)
T ss_dssp             HHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHTTCEECCCTT------CSSCEEEEEECSSCCCEEEEEEECCCBSCCC
T ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEECC------CCCEEEEEEECCCCCCEEEEEEECCCCCCCC
T ss_conf             9999999999968687880899999999999988991899659------9887999990899898699998775587745


Q ss_pred             CCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECCCCCCCC
Q ss_conf             5126630211200663100333320023221123568999999998708--7872899864102668999
Q gi|254780392|r  253 QPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERK--AKINAIGVLALVENMPGSS  320 (494)
Q Consensus       253 ~piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~--~~v~v~~~~~~~EN~~~~~  320 (494)
                            .....|++.      ..+....-.+.++.++.+++++++.+.+  ++.+|+.+.-..|-..+|.
T Consensus       106 ------~~~~~~~~~------~~g~~~a~g~~~~~a~~l~a~~~l~~~~~~l~g~i~lif~~~EE~g~g~  163 (276)
T 1ysj_A          106 ------QTNLPFASK------VDGTXHACGHDFHTASIIGTAXLLNQRRAELKGTVRFIFQPAEEIAAGA  163 (276)
T ss_dssp             ------CCCCTTCCS------STTCBCTTSHHHHHHHHHHHHHHHHTCGGGCSSEEEEEEESCTTTTCHH
T ss_pred             ------CCCCCCCCC------CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC
T ss_conf             ------668875301------0885405555433115788888888875257985899822643322210


No 25 
>>1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG, AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} (A:1-194,A:309-418)
Probab=81.07  E-value=3.8  Score=20.56  Aligned_cols=180  Identities=16%  Similarity=0.090  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC
Q ss_conf             99999864202125403029999999998-61133210000111000134589887420257785068862057886565
Q gi|254780392|r  175 VKGVNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQ  253 (494)
Q Consensus       175 aegv~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~~  253 (494)
                      .+-+.+.|+|+..|.--..-...++.+++ |++.|++++.....       +.+.+.-.|...|+-++.-++-.-+... 
T Consensus        28 ~~~i~~~~~L~~~pe~S~~E~~ta~~i~~~L~~~G~~v~~~~~~-------~~i~~~~~~~~~~~I~l~ah~D~vp~~~-   99 (304)
T 1xmb_A           28 DWMVKIRRKIHENPELGYEELETSKLIRSELELIGIKYRYPVAI-------TGVIGYIGTGEPPFVALRADMDALPIQE-   99 (304)
T ss_dssp             HHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHTCCEEEEETT-------TEEEEEEESSSSCEEEEEEECCCBSCCC-
T ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCC-------CEEEEEECCCCCCEEEEEECCCCCCCCC-
T ss_conf             99999999998475867848999999999999879968976888-------3799998589998799970520022314-


Q ss_pred             CEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC--CCCCCEEEEEEECCCCCCCCCCCHHHHHCCC
Q ss_conf             12663021120066310033332002322112356899999999870--8787289986410266899974707763024
Q gi|254780392|r  254 PLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAER--KAKINAIGVLALVENMPGSSAQRPGDIVRSM  331 (494)
Q Consensus       254 piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l--~~~v~v~~~~~~~EN~~~~~a~~pgdvi~~~  331 (494)
                           ..+..|.+.      ..++..--.+.++.|+.+++++.+.++  +++.+|+.+..-.|-..++.           
T Consensus       100 -----~~~~~~~~~------~~g~~gacg~~~~~a~~L~aa~~l~~~~~~~~g~i~~if~~~EE~g~g~-----------  157 (304)
T 1xmb_A          100 -----GVEWEHKSK------IAGKMHACGHDGHVTMLLGAAKILHEHRHHLQGTVVLIFQPAEEGLSGA-----------  157 (304)
T ss_dssp             -----CCCSTTCCS------STTCBCCSSHHHHHHHHHHHHHHHHHTGGGCSSEEEEEEECCTTTTCHH-----------
T ss_pred             -----CCCCCCCCC------CCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH-----------
T ss_conf             -----777665665------5510234464405688999988887656513853798305652033556-----------


Q ss_pred             CCCEEEEECCCCCCEEEEEHHHHHHHHH--CCCCEEEEEC--CC--CHHHHHHCC---CCCEEEEECCHHHHHHHHHHHH
Q ss_conf             8958886347866403652367887520--7961355211--12--002354317---7605787089899999999899
Q gi|254780392|r  332 SGQTIEVINTDAEGRLILADALWYCRTH--YNPHLMIDLA--TL--TGAMVVSLG---NIYAGLFANNDVLAEQLLSSGL  402 (494)
Q Consensus       332 ~G~tvei~nTDAEGRlvLaD~l~ya~~~--~~p~~iid~A--TL--TGa~~~alG---~~~~g~~~n~~~~~~~~~~a~~  402 (494)
                                           ..+....  -+|+.+|-+-  .-  +|-+.+--|   +.| ...-||.++.+.+.++.+
T Consensus       158 ---------------------~~~i~~~~~~~~d~~i~~h~~~~~~~G~i~~~~G~~~~~~-p~~~Nd~~~~~~~~~~~~  215 (304)
T 1xmb_A          158 ---------------------KKMREEGALKNVEAIFGIHLSARIPFGKAASRAGSFLEPM-PPTVNNKDLYKQFKKVVR  215 (304)
T ss_dssp             ---------------------HHHHHTTTTTTEEEEEEEEEEEEEETTCEEECSEEEECCB-CCEEECHHHHHHHHHHHH
T ss_pred             ---------------------HHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHH
T ss_conf             ---------------------7999767655887403542023456534310147541258-754489999999999999


Q ss_pred             HH-CC
Q ss_conf             85-69
Q gi|254780392|r  403 ST-GE  406 (494)
Q Consensus       403 ~~-ge  406 (494)
                      .. |+
T Consensus       216 ~~~g~  220 (304)
T 1xmb_A          216 DLLGQ  220 (304)
T ss_dssp             HHHCG
T ss_pred             HHHCC
T ss_conf             86196


No 26 
>>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE; 1.86A {Thermotoga maritima} (A:1-70,A:158-346)
Probab=79.99  E-value=3.7  Score=20.65  Aligned_cols=173  Identities=12%  Similarity=0.037  Sum_probs=98.1

Q ss_pred             HHHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCE
Q ss_conf             999864202125403029999999998-6113321000011100013458988742025778506886205788656512
Q gi|254780392|r  177 GVNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQPL  255 (494)
Q Consensus       177 gv~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~~pi  255 (494)
                      -+.+-|+|++.|.---.....++..++ |++.|+++++.+..        .              ++..|.|.+  .+.|
T Consensus         7 ~~~~l~~l~~~~s~s~~e~~~~~~l~~~l~~~g~~~~~~~~~--------~--------------~~~~~~g~~--~~~i   62 (259)
T 1vho_A            7 TGKLLXELSNLDGPSGYETNVVSYIKSVIEPFVDEAKTTRHG--------S--------------LIGYKKGKG--IGKL   62 (259)
T ss_dssp             HHHHHHHHHHSCCBTTCCHHHHHHHHHHHGGGCSEEEECTTS--------C--------------EEEEECCSS--SCEE
T ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCC--------E--------------EEEEECCCC--CCCE
T ss_conf             999999996399969648999999999999759989993697--------3--------------999988889--9738


Q ss_pred             EEEECCEEECC-CCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCC
Q ss_conf             66302112006-6310033332-002322112356899999999870878728998641026689997470776302489
Q gi|254780392|r  256 AFIGKGVVFDT-GGISIKPSHG-MEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSG  333 (494)
Q Consensus       256 aLVGKGvTFDt-GGislKp~~~-M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN~~~~~a~~pgdvi~~~~G  333 (494)
                      +|.|-   +|+ ++..   ... ...---|.+|-|++|.+++.+...+++.+|+.+.--.|-.-                
T Consensus        63 ~~~~H---~D~~~~~~---~~~~~~Ga~Dn~sGva~lLelar~l~~~~~~~ti~fv~~~~EE~g----------------  120 (259)
T 1vho_A           63 AFFAH---VDETAFET---NGKVVGKALDNRASCGVLVKVLEFLKRYDHPWDVYVVFSVQEETG----------------  120 (259)
T ss_dssp             EEEEE---CCBCCEEE---TTEEEETTHHHHHHHHHHHHHHHHHTTCCCSSEEEEEEECTTSSS----------------
T ss_pred             EEEEC---CCCEEEEE---CCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECC----------------
T ss_conf             99971---57789970---374886232142347889999999873366777420000221026----------------


Q ss_pred             CEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEEC----CCCHHHH-HHCCCCCEEE--EECCHHHHHHHHHHHHHHCC
Q ss_conf             588863478664036523678875207961355211----1200235-4317760578--70898999999998998569
Q gi|254780392|r  334 QTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLA----TLTGAMV-VSLGNIYAGL--FANNDVLAEQLLSSGLSTGE  406 (494)
Q Consensus       334 ~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~A----TLTGa~~-~alG~~~~g~--~~n~~~~~~~~~~a~~~~ge  406 (494)
                                     +.-+-.|+ .++.++..+...    ..++... ...+......  ...+..+...+.+..+..+-
T Consensus       121 ---------------~~Gs~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  184 (259)
T 1vho_A          121 ---------------CLGALTGA-YEINPDAAIVXDVTFASEPPFSDHIELGKGPVIGLGPVVDRNLVQKIIEIAKKHNV  184 (259)
T ss_dssp             ---------------HHHHHHTT-CCCCCSEEEEEEEECCCCTTSCCCCCTTSCCEEECSTTSCHHHHHHHHHHHHHTTC
T ss_pred             ---------------CCCCCEEE-EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             ---------------76774210-24330001001343356654443320110121124543442035566555686478


Q ss_pred             CCCCC
Q ss_conf             71767
Q gi|254780392|r  407 LLWRM  411 (494)
Q Consensus       407 ~~w~l  411 (494)
                      +.+.-
T Consensus       185 ~~~~~  189 (259)
T 1vho_A          185 SLQEE  189 (259)
T ss_dssp             CCEEE
T ss_pred             CCCEE
T ss_conf             87636


No 27 
>>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} (A:)
Probab=79.05  E-value=4.4  Score=20.12  Aligned_cols=125  Identities=13%  Similarity=0.108  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHCCCCCEE-E--CHHHHHHHHHH-HHCCCCCHHHHCCCCCC--HHHHHHHHHHHCCCCCCCEEEEEECCCC
Q ss_conf             99999864202125403-0--29999999998-61133210000111000--1345898874202577850688620578
Q gi|254780392|r  175 VKGVNLARDIINEPANV-L--GTDEFCKQVRK-LESLGVAVEILDKEAMH--KLGMNALLAVAQGSSRPPYLAVMKWEGG  248 (494)
Q Consensus       175 aegv~lARDLvN~PaN~-l--tP~~lA~~a~~-l~~~gl~v~Vld~~~L~--klGMg~llaVgqGS~~~Prli~l~Y~g~  248 (494)
                      .+-+.+.|+|++.|+-. .  .-...++..++ |++.|++|++.+.....  ..+.+-+++.=+|++..+          
T Consensus        20 ~~~~~~l~~lv~i~s~~~~s~~e~~~~~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~nvv~~~~g~d~~~----------   89 (299)
T 1rtq_A           20 SQITGTISSLESFTNRFYTTTSGAQASDWIASEWQALSASLPNASVKQVSHSGYNQKSVVMTITGSEAPD----------   89 (299)
T ss_dssp             HHHHHHHHHHHTSSCCCTTSHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEETTEEEEEEEEEECCSSEEE----------
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEECCCCCCC----------
T ss_conf             9999999996087886769830799999999999996161589659997058866762799963888988----------


Q ss_pred             CCCCCCEEEEECCEEECCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECCCC
Q ss_conf             8656512663021120066310033-3320023221123568999999998708--787289986410266
Q gi|254780392|r  249 DSEEQPLAFIGKGVVFDTGGISIKP-SHGMEEMKGDLGGAAAVTGLLHVLAERK--AKINAIGVLALVENM  316 (494)
Q Consensus       249 ~~~~~piaLVGKGvTFDtGGislKp-~~~M~~Mk~DM~GaAav~g~~~aia~l~--~~v~v~~~~~~~EN~  316 (494)
                          +++.+.+.==++..+.-.-+. +.|-.+|   .+|-|+.+.+++++.+.+  ++.+|+.+.-..|--
T Consensus        90 ----~~i~~~ah~D~~~~~~~~~~~~g~Ga~D~---k~g~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~  153 (299)
T 1rtq_A           90 ----EWIVIGGHLDSTIGSHTNEQSVAPGADDD---ASGIAAVTEVIRVLSENNFQPKRSIAFMAYAAEEV  153 (299)
T ss_dssp             ----EEEEEEEECCCCSSTTCCTTCCCCCTTTT---HHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGG
T ss_pred             ----CEEEEEEECCCCCCCCCCCCCCCCCCCCC---HHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHH
T ss_conf             ----88999810277898876678888997564---03299999999999873268766168850063144


No 28 
>>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20/M25/M40, structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482} (A:1-165,A:311-356)
Probab=74.58  E-value=5.8  Score=19.29  Aligned_cols=127  Identities=12%  Similarity=0.147  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECC---CCCC
Q ss_conf             99999864202125403029999999998-6113321000011100013458988742025778506886205---7886
Q gi|254780392|r  175 VKGVNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWE---GGDS  250 (494)
Q Consensus       175 aegv~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~---g~~~  250 (494)
                      .+-+.+.++|++-|.---....+++...+ |++.|+++++.+..        ....+..+....|+++..-+-   |...
T Consensus        11 ~~~i~~l~~li~ipS~S~~e~~~a~~l~~~l~~lG~~v~~~~~~--------~~~~~~~~~~~~~~v~l~~H~DtVp~~~   82 (211)
T 3ct9_A           11 AEAVSLLKSLISIPSISREETQAADFLQNYIEAEGXQTGRKGNN--------VWCLSPXFDLKKPTILLNSHIDTVKPVN   82 (211)
T ss_dssp             HHHHHHHHHHHTSCCBTTCCHHHHHHHHHHHHHTTCCEEEETTE--------EEEECSSCCTTSCEEEEEEECCBCCCC-
T ss_pred             HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCC--------EEEEEECCCCCCCEEEEECCCCCCCCCC
T ss_conf             99999999995799999788999999999999779856983698--------8999754689998599975678888866


Q ss_pred             --CCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC
Q ss_conf             --5651266302112006631003333200232211235689999999987087872899864102668999
Q gi|254780392|r  251 --EEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSS  320 (494)
Q Consensus       251 --~~~piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN~~~~~  320 (494)
                        ...|+..+-.+     |-+  . +.|..+|   .+|.|+++.+++.+.+.+++.+++.+.-..|-..|..
T Consensus        83 ~w~~~P~~~~~~~-----~~l--~-GrG~~D~---kggva~~l~a~~~l~~~~~~~~i~~i~~~~EE~gg~~  143 (211)
T 3ct9_A           83 GWRKDPFTPREEN-----GKL--Y-GLGSNDA---GASVVSLLQVFLQLCRTSQNYNLIYLASCEEEVSGKE  143 (211)
T ss_dssp             ------CCCEECS-----SEE--E-STTTTTT---HHHHHHHHHHHHHHTTSCCSSEEEEEEECCGGGTCTT
T ss_pred             CCCCCCCCCCCCC-----CCC--C-CHHHHHH---HHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC
T ss_conf             6445632232233-----323--1-0122100---1668899999998531022332011012012324566


No 29 
>>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP dipeptidase 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A* (A:1-203,A:447-479)
Probab=70.39  E-value=7.2  Score=18.64  Aligned_cols=135  Identities=18%  Similarity=0.171  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHCCCCCEEEC--HH----HHHHHHH-HHHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCC
Q ss_conf             9999986420212540302--99----9999999-861133210000111000134589887420257785068862057
Q gi|254780392|r  175 VKGVNLARDIINEPANVLG--TD----EFCKQVR-KLESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEG  247 (494)
Q Consensus       175 aegv~lARDLvN~PaN~lt--P~----~lA~~a~-~l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g  247 (494)
                      .+-+...++|+..|.-.-.  |.    ..++... .|++.|++++..+.......         ..+....+-.++-+.+
T Consensus        20 ~~~~~~l~~lv~i~s~s~~~~~s~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~~---------~~~~~~~~~~v~~~~~   90 (236)
T 2zog_A           20 DRYVKKLAEWVAIQSVSAWPEKRGEIRRMMEVAAADVQRLGGSVELVDIGKQKLP---------DGSEIPLPPILLGKLG   90 (236)
T ss_dssp             HHHHHHHHHHHHSCCBTTCGGGHHHHHHHHHHHHHHHHHTTCEEEEECCCEEECT---------TSCEEECCCEEEEEEC
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC---------CCCCCCCCCEEEEEEC
T ss_conf             9999999999778984939766589999999999999976995999945775466---------6666788758999967


Q ss_pred             CCCCCCCEEEEECCEEEC---CCCCCCCC-----------CCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCCEEEEEE
Q ss_conf             886565126630211200---66310033-----------33200232211235689999999987087--872899864
Q gi|254780392|r  248 GDSEEQPLAFIGKGVVFD---TGGISIKP-----------SHGMEEMKGDLGGAAAVTGLLHVLAERKA--KINAIGVLA  311 (494)
Q Consensus       248 ~~~~~~piaLVGKGvTFD---tGGislKp-----------~~~M~~Mk~DM~GaAav~g~~~aia~l~~--~v~v~~~~~  311 (494)
                      .....++|.|.|-.=|--   .+...-.|           +.|-.   -|.+|.|+.+.+++++.+.+.  +.+|+.+.-
T Consensus        91 ~~~~~~~I~l~~H~DtVp~~~~~~~~~~p~~~~~~~~~~~g~Ga~---D~k~gva~~l~a~~~L~~~~~~~~~~I~~~f~  167 (236)
T 2zog_A           91 SDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVEREGKLYGRGST---DDKGPVAGWMNALEAYQKTGQEIPVNLRFCLE  167 (236)
T ss_dssp             CCTTSCEEEEEEECCBCCCCGGGTCSSCTTSCEEETTEEESTTTT---TTHHHHHHHHHHHHHHHHTTCCCSSEEEEEEE
T ss_pred             CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCEEEECCC---CCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf             899989899975764018988654455775216627837830633---56656646667888864101268986389861


Q ss_pred             ECCC--CCCCCC
Q ss_conf             1026--689997
Q gi|254780392|r  312 LVEN--MPGSSA  321 (494)
Q Consensus       312 ~~EN--~~~~~a  321 (494)
                      ..|-  |.+..+
T Consensus       168 ~~EE~G~~Gs~~  179 (236)
T 2zog_A          168 GMEESGSEGLDE  179 (236)
T ss_dssp             SCGGGTCTTHHH
T ss_pred             CCCHHHHHHHHH
T ss_conf             231124555899


No 30 
>>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis H37RV} (A:226-324)
Probab=69.70  E-value=2.2  Score=22.31  Aligned_cols=33  Identities=15%  Similarity=0.240  Sum_probs=27.0

Q ss_pred             CEEEEEEECCCCCCCCC-CCHHHHHCCCCCCEEE
Q ss_conf             28998641026689997-4707763024895888
Q gi|254780392|r  305 NAIGVLALVENMPGSSA-QRPGDIVRSMSGQTIE  337 (494)
Q Consensus       305 ~v~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tve  337 (494)
                      .-+-|.-..+|.|...| .+|||+|.+-||+.|.
T Consensus        17 ~~v~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~   50 (99)
T 1y8t_A           17 LGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPIN   50 (99)
T ss_dssp             SSEEEEEECTTSTTTTTTCCTTCEEEEETTEECC
T ss_pred             CCCCEEEECCCCHHHHCCCCCCCEEEEECCEECC
T ss_conf             6740001258985898799999999988998978


No 31 
>>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha- beta protein, hydrolase; 2.20A {Escherichia coli} (A:220-318)
Probab=69.09  E-value=2.3  Score=22.07  Aligned_cols=59  Identities=14%  Similarity=0.066  Sum_probs=39.1

Q ss_pred             CCCCCC-EEEEEEECCCCCCCCC-CCHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEEC
Q ss_conf             087872-8998641026689997-470776302489588863478664036523678875207961355211
Q gi|254780392|r  300 RKAKIN-AIGVLALVENMPGSSA-QRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLA  369 (494)
Q Consensus       300 l~~~v~-v~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~A  369 (494)
                      ++.+.+ =+-+....++.|...+ .+|||+|++.||..|.=.           +-+.++...+.+...|.+-
T Consensus        19 ~g~~~~~gv~V~~v~~~spA~~~GL~~GD~I~~ing~~i~~~-----------~~~~~~l~~~~~g~~v~i~   79 (99)
T 1te0_A           19 GGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISA-----------LETMDQVAEIRPGSVIPVV   79 (99)
T ss_dssp             SCSSSCCCEEEEEECTTSTTTTTCCCTTCCEEEETTEECCCH-----------HHHHHHHHTSCTTCEEEEE
T ss_pred             HCCCCCCCCEEEEECCCCHHHHCCCCCCCEEEEECCEECCCH-----------HHHHHHHHHCCCCCEEEEE
T ss_conf             066566773455426898588869998999999899997899-----------9999999728998989999


No 32 
>>2cf4_A Protein PH0519, phtet1-12S; aminopeptidase, metalloprotein, hyperthermophIle, archaea, tetrahedral, hydrolase; 3.08A {Pyrococcus horikoshii} (A:1-65,A:158-332)
Probab=68.00  E-value=8  Score=18.30  Aligned_cols=108  Identities=10%  Similarity=0.068  Sum_probs=72.0

Q ss_pred             HHHHHHHCCCCCEEECHHHHHHHHHHH-HCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEE
Q ss_conf             998642021254030299999999986-1133210000111000134589887420257785068862057886565126
Q gi|254780392|r  178 VNLARDIINEPANVLGTDEFCKQVRKL-ESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQPLA  256 (494)
Q Consensus       178 v~lARDLvN~PaN~ltP~~lA~~a~~l-~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~~pia  256 (494)
                      +.+.|+|++.|+=--.+...++..++. ++.|++++--.                       --++.+|.|+   +++|+
T Consensus         5 ~~~~~~lv~~~s~s~~~~~~~~~~~~~~~~~g~~~~~~~-----------------------~~~~~~~~~~---~~~i~   58 (240)
T 2cf4_A            5 IEKLKKFTQIPGISGYEERIREEIIREIKDFADYKVDAI-----------------------GNLIVELGEG---EERIL   58 (240)
T ss_dssp             HHHHHHHHHSCCCTTCCHHHHHHHHHTTTTSSCCEECSS-----------------------SCEEECCSCS---SCCCE
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEECCC-----------------------CEEEEEECCC---CCEEE
T ss_conf             999999973999797779999999999986599898578-----------------------7699998899---98699


Q ss_pred             EEECCEEECCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf             63021120066--3100333320023221123568999999998708787289986410266
Q gi|254780392|r  257 FIGKGVVFDTG--GISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENM  316 (494)
Q Consensus       257 LVGKGvTFDtG--GislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN~  316 (494)
                      |.|--=|..+|  |=-+.|+. .    -|.+|.|+.+-+++.+++.+++.+|+.+.-..|-.
T Consensus        59 ~~~H~D~~~~~~~~~~~~~GA-~----Dn~sGva~lLe~ar~l~~~~~~~~i~fvf~~~EE~  115 (240)
T 2cf4_A           59 FXAHXDEHFSVLNGKYVSTRG-L----DDRFGVVALIEAIKDLVDHELEGKVIFAFTVQEEV  115 (240)
T ss_dssp             EEEECCCCCEECSSSEEECTT-H----HHHHHHHHHHHHHHSSGGGCCSSCCEEEEESSCTT
T ss_pred             EEECCCCEEEEECCCCCCCCC-C----CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEC
T ss_conf             993477347996363223453-4----56310355689999987421356533331002211


No 33 
>>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis MC58} (A:1-179,A:302-393)
Probab=65.91  E-value=8.8  Score=18.02  Aligned_cols=126  Identities=10%  Similarity=0.034  Sum_probs=68.5

Q ss_pred             HHHHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             9999864202125403029999999998-611332100001110001345898874202577850688620578865651
Q gi|254780392|r  176 KGVNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQP  254 (494)
Q Consensus       176 egv~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~~p  254 (494)
                      +-+.+.|+|++.|.---.....++..++ |++.|+++++.+...       ....+.+.....|.++.+-+.-.-     
T Consensus         7 ~~~~~l~~L~~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~h~D~V-----   74 (271)
T 1vgy_A            7 QSLELAKELISRPSVTPDDRDCQKLXAERLHKIGFAAEEXHFGN-------TKNIWLRRGTKAPVVCFAGHTDVV-----   74 (271)
T ss_dssp             HHHHHHHHHHTSCCBTTCCTTHHHHHHHHHHTTTCEEEECCBTT-------BCEEEEEECSSSSEEEEEEECCBC-----
T ss_pred             HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECC-------CCEEEEEECCCCCEEEEECCCCCC-----
T ss_conf             99999999838999798889999999999997899589997099-------328999948999879998875648-----


Q ss_pred             EEEEECCEEECCCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHCCCC--CCEEEEEEECCCC
Q ss_conf             2663021120066310033----332002322112356899999999870878--7289986410266
Q gi|254780392|r  255 LAFIGKGVVFDTGGISIKP----SHGMEEMKGDLGGAAAVTGLLHVLAERKAK--INAIGVLALVENM  316 (494)
Q Consensus       255 iaLVGKGvTFDtGGislKp----~~~M~~Mk~DM~GaAav~g~~~aia~l~~~--v~v~~~~~~~EN~  316 (494)
                      ....++..++|.-....+-    +.+..+   |.+|.|+.+.+++++.+.+.+  .+|+.+.-..|-.
T Consensus        75 ~~~~~~~~~~~p~~~~~~~~~~~grG~~D---~k~gva~~l~a~~~l~~~~~~~~~~i~~~f~~~EE~  139 (271)
T 1vgy_A           75 PTGPVEKWDSPPFEPAERDGRLYGRGAAD---XKTSIACFVTACERFVAKHPNHQGSIALLITSDEEG  139 (271)
T ss_dssp             CCCCGGGSSSCTTSCEEETTEEESTTTTT---THHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSS
T ss_pred             CCCCCCCCCCCCCCCEEECCCEEECCCCC---CCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEC
T ss_conf             89986454224436689806324313244---303446678999975212556466556756743121


No 34 
>>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} (A:)
Probab=63.76  E-value=9.6  Score=17.75  Aligned_cols=126  Identities=10%  Similarity=0.016  Sum_probs=69.9

Q ss_pred             HHHHHHHHHCCCCCEEECH--HHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC
Q ss_conf             9999864202125403029--999999998-6113321000011100013458988742025778506886205788656
Q gi|254780392|r  176 KGVNLARDIINEPANVLGT--DEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEE  252 (494)
Q Consensus       176 egv~lARDLvN~PaN~ltP--~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~  252 (494)
                      +.+.+.|+|++.|.---.|  ...++..++ |++.|+.++......    +.+.+++.              +.+...+.
T Consensus        11 ~~~~~l~~lv~ips~s~~~~e~~~a~~i~~~l~~~G~~~~~~~~~~----~~~~~~~~--------------~~~~~~~~   72 (198)
T 1q7l_A           11 PSVTLFRQYLRIRTVQPKPDYGAAVAFFEETARQLGLGCQKVEVAP----GYVVTVLT--------------WPGTNPTL   72 (198)
T ss_dssp             HHHHHHHHHHTSCCBTTSCCHHHHHHHHHHHHHHHTCEEEEEEEET----TEEEEEEE--------------ECCSSTTS
T ss_pred             HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC----CCEEEEEE--------------EECCCCCC
T ss_conf             9999999996889999494899999999999998799289997179----97589999--------------70689988


Q ss_pred             CCEEEEECCEEECCCCCC----------CC----CCCCCHHHHHHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECCCC
Q ss_conf             512663021120066310----------03----33320023221123568999999998708--787289986410266
Q gi|254780392|r  253 QPLAFIGKGVVFDTGGIS----------IK----PSHGMEEMKGDLGGAAAVTGLLHVLAERK--AKINAIGVLALVENM  316 (494)
Q Consensus       253 ~piaLVGKGvTFDtGGis----------lK----p~~~M~~Mk~DM~GaAav~g~~~aia~l~--~~v~v~~~~~~~EN~  316 (494)
                      ++|.|.|--=|-..+.-.          +.    .+.+.   -.|++|.++.+.+++++.+.+  ++.+|+.+.-..|-.
T Consensus        73 ~~ill~~H~D~Vp~~~~~~~~~~~~~~~~~~~~~~grG~---~D~k~~~~~~l~a~~~l~~~~~~~~~~i~~~f~~~EE~  149 (198)
T 1q7l_A           73 SSILLNSHTDVVPVFKEHWSHDPFEAFKDSEGYIYARGA---QDMKCVSIQYLEAVRRLKVEGHRFPRTIHMTFVPDEEV  149 (198)
T ss_dssp             CEEEEEEECCBCCCCGGGCSSCTTTCCBCTTSEEECTTT---TTTHHHHHHHHHHHHHHHHTTCCCSSCEEEEEESCGGG
T ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCC---CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
T ss_conf             869998155502776667756996301113573427876---45750389999999999982998887589999867443


Q ss_pred             C--CCCCC
Q ss_conf             8--99974
Q gi|254780392|r  317 P--GSSAQ  322 (494)
Q Consensus       317 ~--~~~a~  322 (494)
                      -  ++..|
T Consensus       150 g~~g~~~~  157 (198)
T 1q7l_A          150 GGHQGMEL  157 (198)
T ss_dssp             TSTTTHHH
T ss_pred             CCHHHHHH
T ss_conf             73747999


No 35 
>>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A (A:)
Probab=60.88  E-value=2.1  Score=22.48  Aligned_cols=33  Identities=15%  Similarity=0.529  Sum_probs=27.0

Q ss_pred             CEEEEEEECCCCCCCCCCCHHHHHCCCCCCEEE
Q ss_conf             289986410266899974707763024895888
Q gi|254780392|r  305 NAIGVLALVENMPGSSAQRPGDIVRSMSGQTIE  337 (494)
Q Consensus       305 ~v~~~~~~~EN~~~~~a~~pgdvi~~~~G~tve  337 (494)
                      +=+.+....+|+|...-.||||+|.+.||+.|+
T Consensus         7 ~gv~V~~V~~~spA~~gl~~GD~Il~ing~~v~   39 (100)
T 3i18_A            7 DGVYVXSVKDDVPAADVLHAGDLITEIDGNAFK   39 (100)
T ss_dssp             CCEEEEEECTTSGGGGTCCTTCEEEEETTBCCS
T ss_pred             CCEEEEEECCCCHHHHHCCCCCEEEEECCCCCC
T ss_conf             809999989999689717779999994883379


No 36 
>>3gux_A Putative Zn-dependent exopeptidase; YP_001298628.1, structural genomics, joint center for structural genomics, JCSG; 1.80A {Bacteroides vulgatus atcc 8482} (A:)
Probab=55.92  E-value=13  Score=16.84  Aligned_cols=124  Identities=14%  Similarity=0.151  Sum_probs=68.6

Q ss_pred             HHHHHHHCCCCCEE-ECH--HHHHHHHHH-HHCCCCCHHHHCCCC----CCHHHHHHHHHHHCCCCCCCEEEEEECCCCC
Q ss_conf             99864202125403-029--999999998-611332100001110----0013458988742025778506886205788
Q gi|254780392|r  178 VNLARDIINEPANV-LGT--DEFCKQVRK-LESLGVAVEILDKEA----MHKLGMNALLAVAQGSSRPPYLAVMKWEGGD  249 (494)
Q Consensus       178 v~lARDLvN~PaN~-ltP--~~lA~~a~~-l~~~gl~v~Vld~~~----L~klGMg~llaVgqGS~~~Prli~l~Y~g~~  249 (494)
                      +.+.++|++.|+-. .++  ...++..++ |++.|+++++..-..    ....+.+.+++.=.|+..|+-++.-+|    
T Consensus        30 ~~~l~~l~~i~~~~~~s~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~nii~~~~g~~~~~i~l~aH~----  105 (314)
T 3gux_A           30 YQYIQVQADFGPRVPNTQAHKECGEYLAGQLEKFGAKVYNQYADLIAYDGTILKSRNIIGAYKPESKKRILLCAHW----  105 (314)
T ss_dssp             HHHHHHHHTTCCCCTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEECTTSCEEEEEEEEEEESTTCSSEEEEEEEC----
T ss_pred             HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCEEEEEEEEEECCCCCCCCEEEEEEE----
T ss_conf             9999998556993999999999999999999987996899966602677641467777775057898766999860----


Q ss_pred             CCCCCEEEEECCEEECCCCCCCC---------CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC--CCC
Q ss_conf             65651266302112006631003---------3332002322112356899999999870878728998641026--689
Q gi|254780392|r  250 SEEQPLAFIGKGVVFDTGGISIK---------PSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVEN--MPG  318 (494)
Q Consensus       250 ~~~~piaLVGKGvTFDtGGislK---------p~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN--~~~  318 (494)
                                     |+=...-+         ++.+-.+   |.+|.|+.+.+++.+.+.+++.+|+.+.-..|-  ..+
T Consensus       106 ---------------D~vp~~~~~~~~~~~~~~g~Ga~D---~~~g~a~~l~~~~~l~~~~~~~~i~~~~~~~EE~g~~G  167 (314)
T 3gux_A          106 ---------------DSRPYADNDPDPKNHHTPILGVND---GASGVGVLLEIARQIQKEQPALGIDIVFFDSEDYGIPE  167 (314)
T ss_dssp             ---------------CCCC-----------------------CHHHHHHHHHHHHHHHHSCCSSEEEEEEECSCCC----
T ss_pred             ---------------CCCCCCCCCCCCCCCCCCCCCEEC---CCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC
T ss_conf             ---------------577668877653446763166026---77541999999998622366664289875521126444


Q ss_pred             CCCCC
Q ss_conf             99747
Q gi|254780392|r  319 SSAQR  323 (494)
Q Consensus       319 ~~a~~  323 (494)
                      +.+|.
T Consensus       168 ~~~~~  172 (314)
T 3gux_A          168 FYDGK  172 (314)
T ss_dssp             -----
T ss_pred             CCCCC
T ss_conf             43345


No 37 
>>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} (A:)
Probab=54.34  E-value=4  Score=20.40  Aligned_cols=32  Identities=22%  Similarity=0.420  Sum_probs=27.2

Q ss_pred             EEEEEECCCCCCCCCCCHHHHHCCCCCCEEEE
Q ss_conf             99864102668999747077630248958886
Q gi|254780392|r  307 IGVLALVENMPGSSAQRPGDIVRSMSGQTIEV  338 (494)
Q Consensus       307 ~~~~~~~EN~~~~~a~~pgdvi~~~~G~tvei  338 (494)
                      +-|.-..+|.|-....+|||+|.+-||+.|.=
T Consensus        27 ~~V~~v~~gspA~agL~~GD~I~~ing~~v~~   58 (125)
T 2hga_A           27 VQIDSVVPGSPASKVLTPGLVIESINGMPTSN   58 (125)
T ss_dssp             EEEEEECSSSGGGGTSCTTCEEEEETTEECSS
T ss_pred             EEEEEECCCCHHHHHCCCCCEEEEECCEECCC
T ss_conf             89989899996997365688999989988389


No 38 
>>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} (A:263-448)
Probab=52.29  E-value=4.5  Score=20.07  Aligned_cols=41  Identities=22%  Similarity=0.364  Sum_probs=29.5

Q ss_pred             HHCCCCCC-EEEEEEECCCCCCCCC-CCHHHHHCCCCCCEEEE
Q ss_conf             87087872-8998641026689997-47077630248958886
Q gi|254780392|r  298 AERKAKIN-AIGVLALVENMPGSSA-QRPGDIVRSMSGQTIEV  338 (494)
Q Consensus       298 a~l~~~v~-v~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tvei  338 (494)
                      ..++++.. =+.+....+|.|-.+| .||||+|++-||+.|.=
T Consensus        16 ~~~g~~~~~gv~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~   58 (186)
T 1ky9_A           16 KAXKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISS   58 (186)
T ss_dssp             HTSCCTTCCSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCCS
T ss_pred             HHCCCCCCCCCEEEEECCCCCHHHCCCCCCCEEEECCCCCCCC
T ss_conf             3202457888368898888865553886872999769811599


No 39 
>>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structural genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens} (A:1-210,A:429-485)
Probab=51.71  E-value=15  Score=16.39  Aligned_cols=135  Identities=12%  Similarity=0.059  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHCCCCCEEEC--HH------HHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf             9999986420212540302--99------99999998-611332100001110001345898874202577850688620
Q gi|254780392|r  175 VKGVNLARDIINEPANVLG--TD------EFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKW  245 (494)
Q Consensus       175 aegv~lARDLvN~PaN~lt--P~------~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y  245 (494)
                      .+.+..-++|++.|.--..  |+      ..++...+ |++.|++++.++.......       +.... ..+-.|.-++
T Consensus        25 ~~~~~~l~~lv~ipSvS~~~~~~~~~~~~~~a~~l~~~l~~lG~~~~~~~~~~~~~~-------~~~~~-~~~~~v~a~~   96 (267)
T 3dlj_A           25 DEFVQTLKEWVAIESDSVQPVPRFRQELFRMMAVAADTLQRLGARVASVDMGPQQLP-------DGQSL-PIPPVILAEL   96 (267)
T ss_dssp             HHHHHHHHHHHTSCCBSSSCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCEEEC---------CCEE-ECCCEEEEEE
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC-------CCCCC-CCCCEEEEEE
T ss_conf             999999999957888899986532389999999999999976995999815665456-------67667-8885799996


Q ss_pred             CCCCCCCCCEEEEECCEE----------ECCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHC--CCCCCEEEEEEE
Q ss_conf             578865651266302112----------0066310033-332002322112356899999999870--878728998641
Q gi|254780392|r  246 EGGDSEEQPLAFIGKGVV----------FDTGGISIKP-SHGMEEMKGDLGGAAAVTGLLHVLAER--KAKINAIGVLAL  312 (494)
Q Consensus       246 ~g~~~~~~piaLVGKGvT----------FDtGGislKp-~~~M~~Mk~DM~GaAav~g~~~aia~l--~~~v~v~~~~~~  312 (494)
                      .+. +.+++|.+.|--=|          .|.=-...+- .-+-..---|.+|.++.+.+++++.+.  .+|+||+.++--
T Consensus        97 ~~~-~~~~til~~~H~Dvvp~~~~~~w~~~pf~~~~~d~~l~grGa~Ddkggv~~~l~a~~~l~~~~~~l~~~I~~~~~~  175 (267)
T 3dlj_A           97 GSD-PTKGTVCFYGHLDVQPADRGDGWLTDPYVLTEVDGKLYGRGATDNKGPVLAWINAVSAFRALEQDLPVNIKFIIEG  175 (267)
T ss_dssp             CCC-TTSCEEEEEEECCBCCCCGGGTCSSCTTSCEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTCCCSSEEEEEEES
T ss_pred             CCC-CCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCC
T ss_conf             789-9888799981356258887434467876037789989702402466208999899998775421478642540244


Q ss_pred             CCCCCC
Q ss_conf             026689
Q gi|254780392|r  313 VENMPG  318 (494)
Q Consensus       313 ~EN~~~  318 (494)
                      .|-.=+
T Consensus       176 ~EE~Gs  181 (267)
T 3dlj_A          176 MEEAGS  181 (267)
T ss_dssp             CGGGTT
T ss_pred             CCCHHH
T ss_conf             310255


No 40 
>>2joa_A Serine protease HTRA1; PDZ, beta-sandwich, cyclically-permuted, protein binding; NMR {Homo sapiens} (A:)
Probab=50.50  E-value=1.9  Score=22.64  Aligned_cols=36  Identities=17%  Similarity=0.441  Sum_probs=28.4

Q ss_pred             CCCCEEEEEEECCCCCCCCC-CCHHHHHCCCCCCEEE
Q ss_conf             78728998641026689997-4707763024895888
Q gi|254780392|r  302 AKINAIGVLALVENMPGSSA-QRPGDIVRSMSGQTIE  337 (494)
Q Consensus       302 ~~v~v~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tve  337 (494)
                      ..-+=+.+....+|+|..+| .+|||+|++.||+.|+
T Consensus        32 ~~~~gv~V~~v~~~spA~~aGL~~GD~Iv~ing~~i~   68 (105)
T 2joa_A           32 DVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVV   68 (105)
T ss_dssp             SCCCSEEEEEECSSSHHHHHTCCTTCEECBCSSCBCC
T ss_pred             CCCCCEEEEEECCCCHHHHCCCCCCEEEEEECCEECC
T ss_conf             6888679999888976898299998099999999978


No 41 
>>3c3d_A 2-phospho-L-lactate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FO1; 2.50A {Methanosarcina mazei GO1} PDB: 2ffe_A* 3c3e_A* 3cgw_A (A:)
Probab=49.40  E-value=8.7  Score=18.05  Aligned_cols=28  Identities=18%  Similarity=0.215  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCEEECH
Q ss_conf             9999999999999864202125403029
Q gi|254780392|r  167 VVADIQSVVKGVNLARDIINEPANVLGT  194 (494)
Q Consensus       167 ~i~~~~aiaegv~lARDLvN~PaN~ltP  194 (494)
                      .+..+..+.+++.+.+++.+-+++++..
T Consensus       102 ~L~a~~~l~~ai~~~~~~l~v~g~VlP~  129 (311)
T 3c3d_A          102 IIRDGASLTDSTVKLSSLFGIKANILPX  129 (311)
T ss_dssp             HHHTTCCHHHHHHHHHHHHTCCSEEEES
T ss_pred             HHHCCCCHHHHHHHHHHHHCCCCEEECC
T ss_conf             8872799899999999986899539803


No 42 
>>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A (A:20-84)
Probab=49.28  E-value=3  Score=21.27  Aligned_cols=17  Identities=24%  Similarity=0.450  Sum_probs=13.1

Q ss_pred             CCHHHHHCCCCCCEEEE
Q ss_conf             47077630248958886
Q gi|254780392|r  322 QRPGDIVRSMSGQTIEV  338 (494)
Q Consensus       322 ~~pgdvi~~~~G~tvei  338 (494)
                      .||||+|++.||+.|+=
T Consensus         3 lk~GD~I~~ing~~v~~   19 (65)
T 2zpm_A            3 LQAGDRIVXVDGQPLTQ   19 (65)
T ss_dssp             CCTTCEEEEETTEECCC
T ss_pred             CCCCCEEEEECCEEEEC
T ss_conf             99998999889989604


No 43 
>>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} (A:)
Probab=48.33  E-value=1.6  Score=23.29  Aligned_cols=31  Identities=16%  Similarity=0.135  Sum_probs=23.1

Q ss_pred             EEEEEECCCCCCCCC-CCHHHHHCCCCCCEEE
Q ss_conf             998641026689997-4707763024895888
Q gi|254780392|r  307 IGVLALVENMPGSSA-QRPGDIVRSMSGQTIE  337 (494)
Q Consensus       307 ~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tve  337 (494)
                      +.+....+|.|...| .+|||+|++.||+.|.
T Consensus        39 ~~V~~v~~~spA~~aGL~~GDvI~~ing~~v~   70 (105)
T 2i4s_A           39 YRVSPGKDPVLFESIGLQDGDXAVALNGLDLT   70 (105)
T ss_dssp             EEEEECSCTHHHHHHTCCTTCEEEEETTEETT
T ss_pred             EEEEECCCCCHHHHCCCCCCCEEEEECCEECC
T ss_conf             99960799898998799989999998999948


No 44 
>>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} (A:)
Probab=47.51  E-value=8.2  Score=18.23  Aligned_cols=69  Identities=14%  Similarity=-0.011  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCC-CCEEEEEEECCCCCCCCC----------CCHHHHHCCCCCCEEEEECCCCCCEEE
Q ss_conf             322112356899999999870878-728998641026689997----------470776302489588863478664036
Q gi|254780392|r  280 MKGDLGGAAAVTGLLHVLAERKAK-INAIGVLALVENMPGSSA----------QRPGDIVRSMSGQTIEVINTDAEGRLI  348 (494)
Q Consensus       280 Mk~DM~GaAav~g~~~aia~l~~~-v~v~~~~~~~EN~~~~~a----------~~pgdvi~~~~G~tvei~nTDAEGRlv  348 (494)
                      |+.-|-.+.+++.++-+.+..+.. ..+.......+-......          .=|+..|+...|.||++.|+|-..--+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~f~p~~i~v~~Gd~V~~~~~n~~~h~~   82 (132)
T 3c75_A            3 SAKTLRPAIAAIALFAIGATGAWAQDKITVTSEKPVAAADVPADAVVVGIEKMKYLTPEVTIKAGETVYWVNGEVMPHNV   82 (132)
T ss_dssp             ------------------------CCSEEESCSSCEEGGGSCTTSEEEEEETTEESSSEEEECTTCEEEEEECSSSCBCC
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEECCEEEECCCCEEEEEECCCCCEEE
T ss_conf             15679999999999985045544466332267788655667876669985608897999998999999999899885018


No 45 
>>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein structure initiative; NMR {Geobacillus thermodenitrificans ng80-2} (A:)
Probab=47.19  E-value=4.6  Score=19.98  Aligned_cols=30  Identities=30%  Similarity=0.583  Sum_probs=24.3

Q ss_pred             EEEEECCCCCCCCCCCHHHHHCCCCCCEEE
Q ss_conf             986410266899974707763024895888
Q gi|254780392|r  308 GVLALVENMPGSSAQRPGDIVRSMSGQTIE  337 (494)
Q Consensus       308 ~~~~~~EN~~~~~a~~pgdvi~~~~G~tve  337 (494)
                      -+.-..++.|.-.-.+|||+|++-||+.|.
T Consensus         8 ~V~~V~~~spA~agL~~GD~I~~Ing~~v~   37 (94)
T 2kl1_A            8 YVMSVLPNMPAAGRLEAGDRIAAIDGQPIN   37 (94)
T ss_dssp             ECCCCCTTSTTBTTBCTTCEEEEETTBCCC
T ss_pred             EEEEECCCCHHHHCCCCCCEEEECCCCCCC
T ss_conf             999899999479689999899765999379


No 46 
>>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} (A:54-135)
Probab=47.08  E-value=18  Score=15.90  Aligned_cols=50  Identities=16%  Similarity=0.211  Sum_probs=36.3

Q ss_pred             CCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCEEEEE
Q ss_conf             87872899864102668999747077630248958886347866403652
Q gi|254780392|r  301 KAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILA  350 (494)
Q Consensus       301 ~~~v~v~~~~~~~EN~~~~~a~~pgdvi~~~~G~tvei~nTDAEGRlvLa  350 (494)
                      .+.-++.|++|..|=..+.....|.|+++-=.=.++.|...|.+||+-|.
T Consensus        23 ~l~~~~~g~i~~sel~~~~~~~~~~~~~~~Gd~i~v~V~~vd~~~ri~LS   72 (82)
T 2ba0_A           23 DIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDPKMKVTLT   72 (82)
T ss_dssp             ECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECTTCCEEEE
T ss_pred             ECCCCCCEEEEHHHCCCCCHHHCHHHHCCCCCEEEEEEEEECCCCCEEEE
T ss_conf             80897337987676766101206354247999999999995689867996


No 47 
>>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A (A:1-102)
Probab=46.74  E-value=8.3  Score=18.21  Aligned_cols=35  Identities=23%  Similarity=0.248  Sum_probs=28.5

Q ss_pred             CCEEEEEEECCCCCCCCCCCHHHHHCCCCCCEEEE
Q ss_conf             72899864102668999747077630248958886
Q gi|254780392|r  304 INAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEV  338 (494)
Q Consensus       304 v~v~~~~~~~EN~~~~~a~~pgdvi~~~~G~tvei  338 (494)
                      -.-+-+.-+.+|.|.....++||+|.+-||..|+=
T Consensus        23 ~~~~~V~~v~~~spA~~~L~~GD~Il~Ing~~v~~   57 (102)
T 2qbw_A           23 DDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFIN   57 (102)
T ss_dssp             CCSEEEEEECTTSTTTTTCCTTCEEEEETTEECTT
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCEEEEEECEEHHH
T ss_conf             98889999688985784557799999993541111


No 48 
>>2ytw_A Serine protease HTRA1; protein regulation, IGF-binding protein cleavage, peptidase, structural genomics, NPPSFA; NMR {Homo sapiens} (A:22-112)
Probab=46.50  E-value=9  Score=17.95  Aligned_cols=37  Identities=16%  Similarity=0.424  Sum_probs=28.9

Q ss_pred             CCCCCEEEEEEECCCCCCCCC-CCHHHHHCCCCCCEEE
Q ss_conf             878728998641026689997-4707763024895888
Q gi|254780392|r  301 KAKINAIGVLALVENMPGSSA-QRPGDIVRSMSGQTIE  337 (494)
Q Consensus       301 ~~~v~v~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tve  337 (494)
                      +..-+-+-+.-..+|.|...| .+|||+|.+.||+.|.
T Consensus        23 ~~~~~g~~V~~V~~~spA~~aGL~~GD~Ii~ing~~v~   60 (91)
T 2ytw_A           23 PDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVV   60 (91)
T ss_dssp             CSCCSSEEEEECCSSSTTTTTTCCSSCEEEEETTEECC
T ss_pred             CCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECC
T ss_conf             76887189999856971654499898199999999968


No 49 
>>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} (A:)
Probab=46.03  E-value=8.1  Score=18.27  Aligned_cols=33  Identities=21%  Similarity=0.392  Sum_probs=26.5

Q ss_pred             EEEEEECCCCCCCCC--CCHHHHHCCCCCCEEEEE
Q ss_conf             998641026689997--470776302489588863
Q gi|254780392|r  307 IGVLALVENMPGSSA--QRPGDIVRSMSGQTIEVI  339 (494)
Q Consensus       307 ~~~~~~~EN~~~~~a--~~pgdvi~~~~G~tvei~  339 (494)
                      +-|--..+|.|..+|  .+|||+|.+-||+.|+=.
T Consensus        52 i~V~~V~~gspA~~aG~l~~GD~Il~INg~~v~~~   86 (117)
T 2ehr_A           52 IFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNA   86 (117)
T ss_dssp             EEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTC
T ss_pred             EEEEEECCCCHHHHHCCCCCCCEEEEECCEECCCC
T ss_conf             89999689997898289984779998999998899


No 50 
>>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptide-binding module, hydrolase; 2.75A {Homo sapiens} (A:)
Probab=44.68  E-value=2.7  Score=21.66  Aligned_cols=36  Identities=19%  Similarity=0.397  Sum_probs=26.3

Q ss_pred             CCCEEEEEEECCCCCCCCC-CCHHHHHCCCCCCEEEE
Q ss_conf             8728998641026689997-47077630248958886
Q gi|254780392|r  303 KINAIGVLALVENMPGSSA-QRPGDIVRSMSGQTIEV  338 (494)
Q Consensus       303 ~v~v~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tvei  338 (494)
                      +-+=+-+.-..+|+|...| .+|||+|.+.||+.|.-
T Consensus        33 ~~~~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~   69 (113)
T 2pzd_A           33 VQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN   69 (113)
T ss_dssp             CSSCEEEEEEBTTSHHHHHTCCTTCEEEEETTEECCS
T ss_pred             CCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCC
T ss_conf             8885899997789626654999973999999999789


No 51 
>>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} (A:)
Probab=44.62  E-value=2.3  Score=22.19  Aligned_cols=34  Identities=24%  Similarity=0.331  Sum_probs=26.2

Q ss_pred             CEEEEEEECCCCCCCCC-CCHHHHHCCCCCCEEEE
Q ss_conf             28998641026689997-47077630248958886
Q gi|254780392|r  305 NAIGVLALVENMPGSSA-QRPGDIVRSMSGQTIEV  338 (494)
Q Consensus       305 ~v~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tvei  338 (494)
                      +-+.+....+|+|...| .+|||+|.+-||++|+=
T Consensus        34 ~gv~V~~V~~gspA~~aGl~~GD~Il~Vng~~v~~   68 (97)
T 2w4f_A           34 EGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQG   68 (97)
T ss_dssp             CSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTT
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCC
T ss_conf             87899998789917867899999999899999899


No 52 
>>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix K1} (A:96-123,A:226-389)
Probab=44.03  E-value=19  Score=15.58  Aligned_cols=28  Identities=21%  Similarity=0.248  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf             1235689999999987087872899864
Q gi|254780392|r  284 LGGAAAVTGLLHVLAERKAKINAIGVLA  311 (494)
Q Consensus       284 M~GaAav~g~~~aia~l~~~v~v~~~~~  311 (494)
                      ||...+..|+-+.+-+.++.|.++++=|
T Consensus        63 vGTgGTisGva~yLKe~nP~IkiV~vEP   90 (192)
T 1wkv_A           63 LGTSGHMSAAAFYLQSVDPSIRAVLVQP   90 (192)
T ss_dssp             CSSSHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             CCCCCEEEECHHHHHHHCCCCCEEEECC
T ss_conf             3775312101234444287653367514


No 53 
>>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} (A:)
Probab=43.83  E-value=9.8  Score=17.70  Aligned_cols=37  Identities=24%  Similarity=0.279  Sum_probs=29.5

Q ss_pred             CCEEEEEEECCCCCCCCCCCHHHHHCCCCCCEEEEEC
Q ss_conf             7289986410266899974707763024895888634
Q gi|254780392|r  304 INAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVIN  340 (494)
Q Consensus       304 v~v~~~~~~~EN~~~~~a~~pgdvi~~~~G~tvei~n  340 (494)
                      -.-+-+.-+.+|.|-..+.+|||+|.+-||..|+=..
T Consensus        34 ~~~~~V~~v~~gspA~~~L~~GD~Ii~INg~~v~~~~   70 (95)
T 1mfg_A           34 DDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFINIE   70 (95)
T ss_dssp             CCCEEEEEECTTSTTTTTCCTTCEEEEETTEECTTCB
T ss_pred             CCCEEEEEECCCCHHHHCCCCCCEEEEECCEECCCCC
T ss_conf             9888999988999479617789999999999988996


No 54 
>>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.00A {Bacteroides fragilis nctc 9343} (A:71-171)
Probab=43.49  E-value=3.5  Score=20.88  Aligned_cols=38  Identities=16%  Similarity=0.189  Sum_probs=27.1

Q ss_pred             CCCCCCE-EEEEEECCCCCCCCC-CCHHHHHCCCCCCEEE
Q ss_conf             0878728-998641026689997-4707763024895888
Q gi|254780392|r  300 RKAKINA-IGVLALVENMPGSSA-QRPGDIVRSMSGQTIE  337 (494)
Q Consensus       300 l~~~v~v-~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tve  337 (494)
                      ++.+.+- +-+....+|.|..+| .|+||+|++.||+.|.
T Consensus        14 ~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~idG~~v~   53 (101)
T 3k50_A           14 LDNDTAYNALISYVVPGSPAEEAGLQRGHWIXXXNGDYIT   53 (101)
T ss_dssp             TTCSSCEEEEEEEECTTSHHHHTTCCTTCEEEEETTBCBC
T ss_pred             EECCCCCCEEEEEECCCCCHHHHCCCCCCEEEEECCEECC
T ss_conf             8627777579999378999689089989999980888436


No 55 
>>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} (A:)
Probab=43.47  E-value=1.7  Score=23.00  Aligned_cols=33  Identities=15%  Similarity=0.127  Sum_probs=25.9

Q ss_pred             CEEEEEEECCCCCCCCC-CCHHHHHCCCCCCEEE
Q ss_conf             28998641026689997-4707763024895888
Q gi|254780392|r  305 NAIGVLALVENMPGSSA-QRPGDIVRSMSGQTIE  337 (494)
Q Consensus       305 ~v~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tve  337 (494)
                      +-+-+.-..+|+|...| .+|||+|.+-||+.|+
T Consensus        19 ~g~~V~~v~~~spA~~aGl~~gD~I~~Ing~~v~   52 (87)
T 2i6v_A           19 LGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLT   52 (87)
T ss_dssp             EEEEEEECSCHHHHHHTTCCTTCEEEEETTEETT
T ss_pred             EEEEEECCCCCCHHHHCCCCCCCEEEEECCEEEE
T ss_conf             8999952799898998799999999999999930


No 56 
>>2fvg_A Endoglucanase; TM1049, structural genomics, joint center for structural genomics, JCSG, protein structure initiative PSI, hydrolase; 2.01A {Thermotoga maritima MSB8} (A:1-63,A:152-340)
Probab=42.93  E-value=3.4  Score=20.94  Aligned_cols=104  Identities=13%  Similarity=0.092  Sum_probs=56.4

Q ss_pred             HHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEE
Q ss_conf             864202125403029999999998-6113321000011100013458988742025778506886205788656512663
Q gi|254780392|r  180 LARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQPLAFI  258 (494)
Q Consensus       180 lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~~piaLV  258 (494)
                      |.|+|++.|+=-......++..++ |++.|+++++..        +|.+++              .+.+.+ +.++|.|.
T Consensus         3 ll~~lv~~~s~s~~e~~~~~~~~~~~~~~g~~~~~~~--------~~~~~~--------------~~~~~~-~~~~i~~~   59 (252)
T 2fvg_A            3 YLKELSXXPGVSGDEGKVRDFIKSKIEGLVDNLYTDV--------LGNLIA--------------LKRGRD-SSKKLLVS   59 (252)
T ss_dssp             CHHHHHHSCCBTTCCHHHHHHHHHHHGGGSSEEEECT--------TSCEEE--------------EECCSE-EEEEEEEE
T ss_pred             HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEECC--------CCEEEE--------------EECCCC-CCCEEEEE
T ss_conf             7999855999696789999999999997499899927--------853999--------------981789-99859999


Q ss_pred             ECCEEECC-CCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf             02112006-631003-333200232211235689999999987087872899864102
Q gi|254780392|r  259 GKGVVFDT-GGISIK-PSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVE  314 (494)
Q Consensus       259 GKGvTFDt-GGislK-p~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~E  314 (494)
                      |--   || ++.+=+ ...|   =--|.+|.|+++-+++.+.+.  |.+|+.+.-..|
T Consensus        60 ~H~---Ds~~~~~~~~~~~G---a~Dn~sgva~lLe~ar~l~~~--~~~i~fv~~~~E  109 (252)
T 2fvg_A           60 AHX---DSDYIEKNGRAVGK---AFDDRAGCSVLIDVLESGVSP--AYDTYFVFTVQE  109 (252)
T ss_dssp             EEC---CCCCEEETTEEEES---CHHHHHHHHHHHHHHHTCCCC--SEEEEEEEECCC
T ss_pred             CCC---CCCEEECCCCCCCC---CCCCHHHHHHHHHHHHHHHHC--CCCCCCCCCCCC
T ss_conf             114---62112204642234---344304679999999973321--223211233111


No 57 
>>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} (A:)
Probab=42.52  E-value=7.2  Score=18.63  Aligned_cols=34  Identities=26%  Similarity=0.314  Sum_probs=28.0

Q ss_pred             EEEEEECCCCCCCCCCCHHHHHCCCCCCEEEEEC
Q ss_conf             9986410266899974707763024895888634
Q gi|254780392|r  307 IGVLALVENMPGSSAQRPGDIVRSMSGQTIEVIN  340 (494)
Q Consensus       307 ~~~~~~~EN~~~~~a~~pgdvi~~~~G~tvei~n  340 (494)
                      +-+..+.+|.|...+.++||+|-+-||+.|+=.+
T Consensus        45 i~V~~v~~~s~A~~~L~~GD~Il~VNG~~v~~~~   78 (103)
T 1n7t_A           45 IFVTRVQPEGPASKLLQPGDKIIQANGYSFINIE   78 (103)
T ss_dssp             EECCCBSSSSTTSSSCCTTCEEEEETTEECSSCC
T ss_pred             EEEEEECCCCHHHHCCCCCCEEEEECCEECCCCC
T ss_conf             8999978999368467899999999999988997


No 58 
>>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein binding; 1.70A {Homo sapiens} (A:)
Probab=42.24  E-value=3  Score=21.36  Aligned_cols=35  Identities=23%  Similarity=0.373  Sum_probs=26.9

Q ss_pred             CCCEEEEEEECCCCCCCCC-CCHHHHHCCCCCCEEE
Q ss_conf             8728998641026689997-4707763024895888
Q gi|254780392|r  303 KINAIGVLALVENMPGSSA-QRPGDIVRSMSGQTIE  337 (494)
Q Consensus       303 ~v~v~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tve  337 (494)
                      +.+=+-+....+|+|..+| .+|||+|.+.||+.|.
T Consensus        33 ~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~   68 (112)
T 2p3w_A           33 VSSGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLV   68 (112)
T ss_dssp             CCSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECC
T ss_pred             CCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECC
T ss_conf             888689999789965776388898599999999978


No 59 
>>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, IAP-binding, hydrolase; 2.00A {Homo sapiens} (A:218-325)
Probab=41.37  E-value=3.1  Score=21.21  Aligned_cols=38  Identities=18%  Similarity=0.368  Sum_probs=29.4

Q ss_pred             CCCCCEEEEEEECCCCCCCCC-CCHHHHHCCCCCCEEEE
Q ss_conf             878728998641026689997-47077630248958886
Q gi|254780392|r  301 KAKINAIGVLALVENMPGSSA-QRPGDIVRSMSGQTIEV  338 (494)
Q Consensus       301 ~~~v~v~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tvei  338 (494)
                      ..+-+=+.+....+++|..++ .++||+|++.||+.|.-
T Consensus        35 ~~~~~g~~V~~V~~~spA~~aGL~~GD~Ii~ing~~i~~   73 (108)
T 1lcy_A           35 PDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN   73 (108)
T ss_dssp             CCCSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCS
T ss_pred             CCCCCEEEEEEECCCCHHHHCCCCCCCEEEEECCEECCC
T ss_conf             767760599994899968987999899999989999389


No 60 
>>2fgy_A Carboxysome shell polypeptide; beta class of carbonic anhydrase, lyase; 2.20A {Halothiobacillus neapolitanus} (A:1-175)
Probab=39.25  E-value=15  Score=16.36  Aligned_cols=37  Identities=22%  Similarity=0.385  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHH--CCCCCH--HHHCCCCCCHHHHHHHHHHH
Q ss_conf             99999999861--133210--00011100013458988742
Q gi|254780392|r  195 DEFCKQVRKLE--SLGVAV--EILDKEAMHKLGMNALLAVA  231 (494)
Q Consensus       195 ~~lA~~a~~l~--~~gl~v--~Vld~~~L~klGMg~llaVg  231 (494)
                      ..|+++|+.++  +.|++.  .||+..|..-+.|.+|.|-.
T Consensus       118 ~DF~erAQ~laraeLGf~LP~~iLe~AWV~~LDMRaLfA~c  158 (175)
T 2fgy_A          118 LDHVTRVQELAQSSLGHTLPEELLKDNWISGHNLKGIFGYA  158 (175)
T ss_dssp             SCCHHHHHHHHHHHHSSCCCGGGSCCBTTTBSCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHH
T ss_conf             45999999999997589883889886165755389999999


No 61 
>>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} (D:)
Probab=36.43  E-value=8  Score=18.30  Aligned_cols=33  Identities=21%  Similarity=0.147  Sum_probs=25.6

Q ss_pred             EEEEEEECCCCCCCCC-CCHHHHHCCCCCCEEEE
Q ss_conf             8998641026689997-47077630248958886
Q gi|254780392|r  306 AIGVLALVENMPGSSA-QRPGDIVRSMSGQTIEV  338 (494)
Q Consensus       306 v~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tvei  338 (494)
                      -+.|....++.|..++ .+|||+|..-||+.|+=
T Consensus        66 gi~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~   99 (132)
T 3l4f_D           66 LQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVK   99 (132)
T ss_dssp             SEEEEEECTTSGGGGGTCCTTCEEEEESSSBCTT
T ss_pred             CEEEEEECCCCHHHHCCCCCCCEEEEECCEECCC
T ss_conf             8899997999989984999899999899999899


No 62 
>>2v90_A PDZ domain-containing protein 3; alternative splicing, membrane, cytoplasm, protein-binding; 2.00A {Homo sapiens} (A:)
Probab=34.89  E-value=4.7  Score=19.92  Aligned_cols=32  Identities=19%  Similarity=0.343  Sum_probs=23.6

Q ss_pred             EEEEEECCCCCCCCC-CCHHHHHCCCCCCEEEE
Q ss_conf             998641026689997-47077630248958886
Q gi|254780392|r  307 IGVLALVENMPGSSA-QRPGDIVRSMSGQTIEV  338 (494)
Q Consensus       307 ~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tvei  338 (494)
                      +.+.-..++.|..+| .+|||+|.+-||+.|+=
T Consensus        32 v~I~~v~~~spA~~aGL~~GD~Il~ing~~v~~   64 (96)
T 2v90_A           32 QFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEG   64 (96)
T ss_dssp             EEEEEECTTSHHHHTTCCTTEEEEEETTEECTT
T ss_pred             EEEEEECCCCHHHHCCCCCCCEEEEECCEECCC
T ss_conf             899996799989985998899999991988699


No 63 
>>1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI; 1.60A {Pyrococcus horikoshii} (A:1-71,A:166-353)
Probab=34.46  E-value=27  Score=14.58  Aligned_cols=105  Identities=13%  Similarity=0.142  Sum_probs=59.9

Q ss_pred             HHHHHHHCCCCCEEECHH-HHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCE
Q ss_conf             998642021254030299-99999998-6113321000011100013458988742025778506886205788656512
Q gi|254780392|r  178 VNLARDIINEPANVLGTD-EFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQPL  255 (494)
Q Consensus       178 v~lARDLvN~PaN~ltP~-~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~~pi  255 (494)
                      +.+.|+|++.|+---..+ ..++...+ +++.|+++++....                      .++.++.|   ..++|
T Consensus         9 ~~~l~~l~~~~s~s~~~~~~~~~~~~~~~~~~g~~~~~~~~~----------------------~~~~~~~~---~~~~i   63 (259)
T 1y0y_A            9 YELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLG----------------------NVIAHKKG---EGPKV   63 (259)
T ss_dssp             HHHHHHHHHSCCBTTCGGGTHHHHHHHHHGGGSSEEEECTTC----------------------CEEEEECC---SSCEE
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCC----------------------EEEEEECC---CCCEE
T ss_conf             999999974999596416999999999999709969993784----------------------29999789---99759


Q ss_pred             EEEECCEEECCCCC-CCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf             66302112006631-0033----3320023221123568999999998708787289986410266
Q gi|254780392|r  256 AFIGKGVVFDTGGI-SIKP----SHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENM  316 (494)
Q Consensus       256 aLVGKGvTFDtGGi-slKp----~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN~  316 (494)
                      +|.|-   +||=.. .++.    +.+.+    |.+|.|+++.+++.+.+.+  ..|+.+.-..|-.
T Consensus        64 ~l~~H---~Dtp~~~~~~~g~i~g~g~D----d~~gva~~Le~ar~l~~~~--~~i~~~~~~~EE~  120 (259)
T 1y0y_A           64 MIAAH---MDQGRLERLGKHRFVSIAFD----DRIAVYTILEVAKQLKDAK--ADVYFVATVQEEV  120 (259)
T ss_dssp             EEEEE---CCBCCCEEETTTEEEETTHH----HHHHHHHHHHHHHHCCSCS--SEEEEEEESCCTT
T ss_pred             EEEEC---CCCEEEEEEEECCCCCCHHH----HHHHHHHHHHHHHHHCCCC--CCCCCCCCEEEEE
T ss_conf             99966---88623465320111142444----2123677888766420246--7643113113465


No 64 
>>2sns_A Thermonuclease precursor; hydrolase (phosphoric diester); HET: THP; 1.50A {Staphylococcus aureus} (A:)
Probab=34.35  E-value=25  Score=14.82  Aligned_cols=27  Identities=15%  Similarity=0.448  Sum_probs=13.3

Q ss_pred             HHHHHCCCCCCEEEEECCCCCCEEEEE
Q ss_conf             077630248958886347866403652
Q gi|254780392|r  324 PGDIVRSMSGQTIEVINTDAEGRLILA  350 (494)
Q Consensus       324 pgdvi~~~~G~tvei~nTDAEGRlvLa  350 (494)
                      ++.|+.-.+|-|+.|...+-+=|+-|+
T Consensus        11 ~~~V~~V~dGdt~~v~~~~~~~~vrL~   37 (149)
T 2sns_A           11 PATLIKAIDGDTVKLMYKGQPMTFRLL   37 (149)
T ss_dssp             EECEEEECSSSEEEECTTSSCEEEEES
T ss_pred             CEEEEEEECCCEEEEEECCCEEEEEEE
T ss_conf             649999971989999979968899998


No 65 
>>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=34.01  E-value=4.2  Score=20.30  Aligned_cols=33  Identities=24%  Similarity=0.374  Sum_probs=24.2

Q ss_pred             CEEEEEEECCCCCCCCC-CCHHHHHCCCCCCEEE
Q ss_conf             28998641026689997-4707763024895888
Q gi|254780392|r  305 NAIGVLALVENMPGSSA-QRPGDIVRSMSGQTIE  337 (494)
Q Consensus       305 ~v~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tve  337 (494)
                      .-+.|-.+.+|.|...| .+|||+|..-||+.|+
T Consensus        46 ~gv~V~~v~~gspA~~aGl~~GD~Il~Ing~~v~   79 (110)
T 1x5q_A           46 EGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQ   79 (110)
T ss_dssp             CSEEEEEECTTSHHHHHTCCTTCEEEEETTEECT
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECC
T ss_conf             8889999789995685467889999989999989


No 66 
>>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} (A:)
Probab=32.93  E-value=5.9  Score=19.26  Aligned_cols=31  Identities=19%  Similarity=0.287  Sum_probs=16.2

Q ss_pred             EEEEEECCCCCCCCC--CCHHHHHCCCCCCEEE
Q ss_conf             998641026689997--4707763024895888
Q gi|254780392|r  307 IGVLALVENMPGSSA--QRPGDIVRSMSGQTIE  337 (494)
Q Consensus       307 ~~~~~~~EN~~~~~a--~~pgdvi~~~~G~tve  337 (494)
                      +.|.-+.+|+|...|  .+|||+|.+-||+.|+
T Consensus        50 i~V~~v~~gspA~~aG~L~~GD~Il~INg~~v~   82 (124)
T 1wh1_A           50 IYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ   82 (124)
T ss_dssp             EEEEEECSSSHHHHTCCCCTTCEEEEESSCBCC
T ss_pred             EEEEEECCCCHHHHCCCCCCCCEEEEECCEECC
T ss_conf             999998999959977696767799999999888


No 67 
>>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus HB8} (A:76-105,A:218-285,A:345-418)
Probab=31.48  E-value=30  Score=14.25  Aligned_cols=32  Identities=19%  Similarity=0.119  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf             32211235689999999987087872899864
Q gi|254780392|r  280 MKGDLGGAAAVTGLLHVLAERKAKINAIGVLA  311 (494)
Q Consensus       280 Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~  311 (494)
                      +-.--+++|++.++++...++...-+|++++|
T Consensus       123 i~~G~SSGaaiaaA~kla~~~~~g~~VV~i~~  154 (172)
T 1x1q_A          123 IIPALESAHAIAYAAKVVPEXDKDQVVVINLS  154 (172)
T ss_dssp             CCBCHHHHHHHHHHHHHTTTSCTTCEEEEEEC
T ss_pred             CEECCHHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             97726389999999998677189897999968


No 68 
>>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis} (A:)
Probab=31.18  E-value=10  Score=17.51  Aligned_cols=28  Identities=32%  Similarity=0.504  Sum_probs=21.8

Q ss_pred             EEECCCCCCCCCCCHHHHHCCCCCCEEE
Q ss_conf             6410266899974707763024895888
Q gi|254780392|r  310 LALVENMPGSSAQRPGDIVRSMSGQTIE  337 (494)
Q Consensus       310 ~~~~EN~~~~~a~~pgdvi~~~~G~tve  337 (494)
                      .-..+|+|...-.+|||+|.+-||+.|.
T Consensus         6 ~~V~~~spA~agl~~GD~Il~ing~~i~   33 (91)
T 2kjp_A            6 SSVVENMPAKGKIEVGDKIISADGKNYQ   33 (91)
T ss_dssp             CCCCCSSCCSSCCCSSCEEEEETTBCCS
T ss_pred             EEECCCCHHHHCCCCCCEEEEECCCCCC
T ss_conf             9889999478189878799996677189


No 69 
>>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} (A:734-828)
Probab=31.04  E-value=8.1  Score=18.26  Aligned_cols=26  Identities=19%  Similarity=0.256  Sum_probs=17.4

Q ss_pred             ECCCCCCCCC-CC-HHHHHCCCCCCEEE
Q ss_conf             1026689997-47-07763024895888
Q gi|254780392|r  312 LVENMPGSSA-QR-PGDIVRSMSGQTIE  337 (494)
Q Consensus       312 ~~EN~~~~~a-~~-pgdvi~~~~G~tve  337 (494)
                      ..+|+|.-+| .+ |||+|.+-||+.|.
T Consensus        30 v~~~sPA~~aGl~~~GD~Ii~ing~~v~   57 (95)
T 1k32_A           30 EGEKSPIFEYGIDPTGYLIEDIDGETVG   57 (95)
T ss_dssp             TTCBCGGGGGTCCCTTCEEEEETTEECB
T ss_pred             CCCCCHHHHCCCCCCCCEEEEECCEECC
T ss_conf             5569907875898789899998999885


No 70 
>>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} (A:)
Probab=30.88  E-value=23  Score=15.04  Aligned_cols=33  Identities=12%  Similarity=0.044  Sum_probs=27.3

Q ss_pred             CCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCE
Q ss_conf             266899974707763024895888634786640
Q gi|254780392|r  314 ENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGR  346 (494)
Q Consensus       314 EN~~~~~a~~pgdvi~~~~G~tvei~nTDAEGR  346 (494)
                      =++.+++..-|++.|+...|.+|++.++....-
T Consensus         8 ~~~~~~~~~~~~p~i~v~~Gd~V~~~~~N~~~h   40 (106)
T 2gim_A            8 LGSDKGLLVFEPAKLTIKPGDTVEFLNNKVPPH   40 (106)
T ss_dssp             ESCTTCCSSEESSEEEECTTCEEEEEECSSSCC
T ss_pred             EEECCCCEEEECCEEEECCCCEEEEEECCCCCC
T ss_conf             973797368879999999999999998998974


No 71 
>>3kre_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ATP-binding, ligase; 1.80A {Ehrlichia chaffeensis str} (A:105-240)
Probab=30.78  E-value=15  Score=16.33  Aligned_cols=93  Identities=15%  Similarity=0.212  Sum_probs=48.7

Q ss_pred             HHHHCCCCCCCEEEEEECCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             87420257785068862057886565126630211200663100333320023221123568999999998708787289
Q gi|254780392|r  228 LAVAQGSSRPPYLAVMKWEGGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAI  307 (494)
Q Consensus       228 laVgqGS~~~Prli~l~Y~g~~~~~~piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~  307 (494)
                      +++..|..-|+-++...||.....+++|-   .-----.|.++   ..-++.|+      ...+-....+.++=.+++++
T Consensus        22 ~g~~eg~~l~~Pive~~~K~d~~~Dp~i~---~~~~~~~~~~~---~~e~~~i~------~~a~~i~~~l~~~~~~~gl~   89 (136)
T 3kre_A           22 FQIADGTPFKSPIIEFYYKNDELSDPMVS---EGHILSFQWLT---NQELEKIK------ILSLKINNILSELFFNVGIK   89 (136)
T ss_dssp             HTCCTTCEEEEEEEEEEECCTTTTCCEEC---HHHHHHTTSSC---HHHHHHHH------HHHHHHHHHHHHHHHHTTEE
T ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCC---HHHHHHHHHHH---HHHHHHHH------HHHHHHHHHHHHHHHHCCCE
T ss_conf             03045630478877652235567545555---77898850013---78898999------99999999999999873948


Q ss_pred             EEEEECCCCCCCCCCCHHHHHCCCCCCEEEEE--CCCCCCEEEEEHHHHH
Q ss_conf             98641026689997470776302489588863--4786640365236788
Q gi|254780392|r  308 GVLALVENMPGSSAQRPGDIVRSMSGQTIEVI--NTDAEGRLILADALWY  355 (494)
Q Consensus       308 ~~~~~~EN~~~~~a~~pgdvi~~~~G~tvei~--nTDAEGRlvLaD~l~y  355 (494)
                      -+=                       ..+|-+  .+|++|++||+|-++=
T Consensus        90 LvD-----------------------~K~EFG~~~dd~~g~iiL~DEItP  116 (136)
T 3kre_A           90 LVD-----------------------FKLEFGKLHNDEQSDLFLADEISP  116 (136)
T ss_dssp             EEE-----------------------EEECEEEETTCTTCCCEECSCCST
T ss_pred             EEE-----------------------EEEEEEEECCCCCCEEEEEEEECC
T ss_conf             871-----------------------114674312698886999995379


No 72 
>>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesion; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A (A:)
Probab=30.31  E-value=20  Score=15.56  Aligned_cols=34  Identities=15%  Similarity=0.279  Sum_probs=26.6

Q ss_pred             CCEEEEEEECCCCCCCCCCCHHHHHCCCCCCEEE
Q ss_conf             7289986410266899974707763024895888
Q gi|254780392|r  304 INAIGVLALVENMPGSSAQRPGDIVRSMSGQTIE  337 (494)
Q Consensus       304 v~v~~~~~~~EN~~~~~a~~pgdvi~~~~G~tve  337 (494)
                      ...+.+-...++.+-....+|||+|.+-||++|+
T Consensus        38 ~~~~~V~~v~~~s~A~agl~~GD~Il~Ing~~v~   71 (107)
T 2h2b_A           38 ETSIVISDVLKGGPAEGQLQENDRVAMVNGVSMD   71 (107)
T ss_dssp             CCCEEEEEECTTSTTBTTBCTTCEEEEETTEECT
T ss_pred             CCCEEEEEECCCCCCCCCCCCCCEEEEECCEECC
T ss_conf             8888999976698230678899999999999988


No 73 
>>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} (A:)
Probab=30.11  E-value=10  Score=17.62  Aligned_cols=30  Identities=20%  Similarity=0.427  Sum_probs=22.4

Q ss_pred             EEEEECCCCCCCCC--CCHHHHHCCCCCCEEE
Q ss_conf             98641026689997--4707763024895888
Q gi|254780392|r  308 GVLALVENMPGSSA--QRPGDIVRSMSGQTIE  337 (494)
Q Consensus       308 ~~~~~~EN~~~~~a--~~pgdvi~~~~G~tve  337 (494)
                      .|....+|.|...|  .+|||+|.+-||+.|+
T Consensus        46 ~V~~V~~~s~A~~aG~L~~GD~Il~INg~~v~   77 (114)
T 1uew_A           46 KIGRIIDGSPADRCAKLKVGDRILAVNGQSII   77 (114)
T ss_dssp             EEEEECTTCTTGGGSSCCTTCBEEEETTBCTT
T ss_pred             EEEEECCCCHHHHCCCCCCCCEEEEECCEECC
T ss_conf             99998999989987999889798899198989


No 74 
>>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A (A:)
Probab=30.06  E-value=6.5  Score=18.94  Aligned_cols=36  Identities=31%  Similarity=0.391  Sum_probs=26.0

Q ss_pred             CEEEEEEECCCCCCCCC-CCHHHHHCCCCCCEEEEEC
Q ss_conf             28998641026689997-4707763024895888634
Q gi|254780392|r  305 NAIGVLALVENMPGSSA-QRPGDIVRSMSGQTIEVIN  340 (494)
Q Consensus       305 ~v~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tvei~n  340 (494)
                      +-+-|-...+|.|..+| .||||+|.+-||+.|+=..
T Consensus        37 ~~~~V~~V~~~spA~~aGL~~GD~Ii~Ing~~v~~~~   73 (96)
T 2ego_A           37 MVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIR   73 (96)
T ss_dssp             EEEEEEEECTTCHHHHTTCCTTCEEEEETTEECTTCC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCC
T ss_conf             6889999899896898599769899999999989999


No 75 
>>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} (A:)
Probab=30.01  E-value=15  Score=16.43  Aligned_cols=31  Identities=16%  Similarity=0.318  Sum_probs=21.1

Q ss_pred             EEEEEECCCCCCCCC--CCHHHHHCCCCCCEEE
Q ss_conf             998641026689997--4707763024895888
Q gi|254780392|r  307 IGVLALVENMPGSSA--QRPGDIVRSMSGQTIE  337 (494)
Q Consensus       307 ~~~~~~~EN~~~~~a--~~pgdvi~~~~G~tve  337 (494)
                      +.|.-+.++.|...+  .+|||+|.+-||..|+
T Consensus        39 ~~I~~v~~gspA~~~g~L~~GD~Il~Vng~~v~   71 (101)
T 2yt7_A           39 AVIANLLHGGPAERSGALSIGDRLTAINGTSLV   71 (101)
T ss_dssp             EEEEEECTTSTTGGGSSCCTTCEEEEESSCBCT
T ss_pred             EEEEEECCCCHHHHCCCCCCCCEEEEECCEECC
T ss_conf             999981899979972999644684889999889


No 76 
>>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=29.53  E-value=18  Score=15.81  Aligned_cols=32  Identities=22%  Similarity=0.293  Sum_probs=19.5

Q ss_pred             EEEEEECCCCCCCCC---CCHHHHHCCCCCCEEEE
Q ss_conf             998641026689997---47077630248958886
Q gi|254780392|r  307 IGVLALVENMPGSSA---QRPGDIVRSMSGQTIEV  338 (494)
Q Consensus       307 ~~~~~~~EN~~~~~a---~~pgdvi~~~~G~tvei  338 (494)
                      +.|.-..++.+...+   .+|||.|.+-||+.|+=
T Consensus        43 ~~V~~v~~~~~a~a~~~gL~~GD~Ii~Ing~~v~~   77 (119)
T 2cs5_A           43 VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAE   77 (119)
T ss_dssp             EEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTS
T ss_pred             EEEEEECCCCCEEECCCCCCCCCEEEEECCEECCC
T ss_conf             89999889983020259877798998999947689


No 77 
>>2vpu_A TET3, 354AA long hypothetical operon protein FRV; unknown function, protease, thermophilic, SELF-compartmentalising, hydrolase; 1.9A {Pyrococcus horikoshii} PDB: 2pe3_A (A:1-74,A:170-354)
Probab=29.05  E-value=33  Score=13.97  Aligned_cols=173  Identities=16%  Similarity=0.072  Sum_probs=88.9

Q ss_pred             HHHHHHHCCCCCEEECHH-HHHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCE
Q ss_conf             998642021254030299-99999998-6113321000011100013458988742025778506886205788656512
Q gi|254780392|r  178 VNLARDIINEPANVLGTD-EFCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQPL  255 (494)
Q Consensus       178 v~lARDLvN~PaN~ltP~-~lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~~~~~pi  255 (494)
                      +.+.|+|++.|+--..++ ..++..++ +++.|+++++.+        +|.              ++.++.+   .+++|
T Consensus        12 ~~~l~~lv~~~s~s~~~~~~~~~~~~~~~~~~g~~~~~~~--------~~n--------------~~~~~~~---~~~~i   66 (259)
T 2vpu_A           12 WKLMQEIIEAPGVSGYEHLGIRDIVVDVLKEVADEVKVDK--------LGN--------------VIAHFKG---SSPRI   66 (259)
T ss_dssp             HHHHHHHHHSCCBTTCGGGTHHHHHHHHHHTTCSEEEECT--------TCC--------------EEEEECC---SSSEE
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECC--------CCC--------------EEEEECC---CCCEE
T ss_conf             9999999749996965589999999999997299799927--------974--------------8999789---99548


Q ss_pred             EEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCE
Q ss_conf             66302112006631003333200232211235689999999987087872899864102668999747077630248958
Q gi|254780392|r  256 AFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQT  335 (494)
Q Consensus       256 aLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN~~~~~a~~pgdvi~~~~G~t  335 (494)
                      .|.|-   +||-........-...---|-+|-|+++.+++.++  +++.+|+.+.--.|.--                  
T Consensus        67 ~~~~H---~D~~~~~~~~~~~~~Ga~Dn~sGva~lLe~ar~l~--~~~~~i~fv~~~~EE~G------------------  123 (259)
T 2vpu_A           67 MVAAH---MDKNFTRLNEHRFATPYLDDRICLYAMIEAARQLG--DHEADIYIVGSVQEEVG------------------  123 (259)
T ss_dssp             EEECC---CCBCCEECSSSEEECTTHHHHHHHHHHHHHHHHCC--CCSSEEEEEECSCCTTT------------------
T ss_pred             EEECC---CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH--HCCCCCEECCCCEEEEE------------------
T ss_conf             99815---77657884155433455556410667899999975--22343200122215764------------------


Q ss_pred             EEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCC-------HHHHHHCCCCCEEEEE--CCHHHHHHHHHHHHHHCC
Q ss_conf             8863478664036523678875207961355211120-------0235431776057870--898999999998998569
Q gi|254780392|r  336 IEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLT-------GAMVVSLGNIYAGLFA--NNDVLAEQLLSSGLSTGE  406 (494)
Q Consensus       336 vei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ATLT-------Ga~~~alG~~~~g~~~--n~~~~~~~~~~a~~~~ge  406 (494)
                                   +..+..|+. .+.++....+.-..       +.....++....-.++  .+..+.+.+.+..+..+-
T Consensus       124 -------------~~Gs~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~  189 (259)
T 2vpu_A          124 -------------LRGARVASY-AINPEVGIAMDVTFAKQPHDKGKIVPELGKGPVMDVGPNINPKLRAFADEVAKKYEI  189 (259)
T ss_dssp             -------------SHHHHHHHH-HHCCSEEEEEEEEECCCTTSTTCCCCCTTSCCEEEESTTSCHHHHHHHHHHHHHTTC
T ss_pred             -------------EECCCCCCC-CCCCCHHHCCCEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf             -------------311322344-543120002332332542115555554336510135534574200124568998478


Q ss_pred             CCCCCC
Q ss_conf             717677
Q gi|254780392|r  407 LLWRMP  412 (494)
Q Consensus       407 ~~w~lP  412 (494)
                      +.+..+
T Consensus       190 ~~~~~~  195 (259)
T 2vpu_A          190 PLQVEP  195 (259)
T ss_dssp             CCEEEE
T ss_pred             CCCCEE
T ss_conf             867168


No 78 
>>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A (A:82-192)
Probab=29.01  E-value=6.8  Score=18.81  Aligned_cols=33  Identities=18%  Similarity=0.260  Sum_probs=21.9

Q ss_pred             EEEEEECCCCCCCCC-CCHHHHHCCCCCCEEEEE
Q ss_conf             998641026689997-470776302489588863
Q gi|254780392|r  307 IGVLALVENMPGSSA-QRPGDIVRSMSGQTIEVI  339 (494)
Q Consensus       307 ~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tvei~  339 (494)
                      +.|....+|.|..+| .+|||+|.+-||+.|+=.
T Consensus        31 v~V~~V~~~spA~~aGl~~GD~Il~Ing~~v~~~   64 (111)
T 3k1r_A           31 LFISHLIKGGQADSVGLQVGDEIVRINGYSISSC   64 (111)
T ss_dssp             EEEEEECTTSHHHHTTCCTTEEEEEETTEECTTC
T ss_pred             EEEEEECCCCHHHHCCCCCCCEEEEECCEECCCC
T ss_conf             8999989999899829998999999999999999


No 79 
>>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* (A:153-365)
Probab=28.97  E-value=17  Score=16.04  Aligned_cols=20  Identities=35%  Similarity=0.579  Sum_probs=14.8

Q ss_pred             CCCHHHHHCC----CCCCEEEEEC
Q ss_conf             7470776302----4895888634
Q gi|254780392|r  321 AQRPGDIVRS----MSGQTIEVIN  340 (494)
Q Consensus       321 a~~pgdvi~~----~~G~tvei~n  340 (494)
                      .|+-|||.|+    -+|+||+|..
T Consensus       124 ~f~~GD~~TTlI~T~~GktI~iqH  147 (213)
T 2ixa_A          124 EWKQGDIVTTQIQCHNGETIVLTH  147 (213)
T ss_dssp             CCCSCSCEEEEEEETTSCEEEEEE
T ss_pred             CEEECCCEEEEEEECCCCEEEEEE
T ss_conf             332135225788843884799999


No 80 
>>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} (A:)
Probab=28.80  E-value=12  Score=17.14  Aligned_cols=33  Identities=18%  Similarity=0.376  Sum_probs=24.3

Q ss_pred             EEEEEECCCCCCCCC-CCHHHHHCCCCCCEEEEE
Q ss_conf             998641026689997-470776302489588863
Q gi|254780392|r  307 IGVLALVENMPGSSA-QRPGDIVRSMSGQTIEVI  339 (494)
Q Consensus       307 ~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tvei~  339 (494)
                      +.+.-..++.|..+| .+|||+|.+-||+.|+=.
T Consensus        31 ~~V~~V~~~spA~~aGl~~GD~I~~VNg~~v~~~   64 (103)
T 1v5l_A           31 LVITRITPGSKAAAANLCPGDVILAIDGFGTESM   64 (103)
T ss_dssp             EECSCBCTTSTTGGGTCCTTCBEEEETTEECSSC
T ss_pred             EEEEECCCCCHHHHCCCCCCCEEEEECCEEECCC
T ss_conf             8999745899578579889999999999993898


No 81 
>>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A (A:)
Probab=28.43  E-value=7.4  Score=18.55  Aligned_cols=30  Identities=23%  Similarity=0.520  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCCCC-CCHHHHHCCCCCCEEE
Q ss_conf             98641026689997-4707763024895888
Q gi|254780392|r  308 GVLALVENMPGSSA-QRPGDIVRSMSGQTIE  337 (494)
Q Consensus       308 ~~~~~~EN~~~~~a-~~pgdvi~~~~G~tve  337 (494)
                      .|.-..+|.|...| .+|||+|..-||+.|.
T Consensus        37 ~V~~V~~~spA~~aGl~~GD~I~~ing~~i~   67 (99)
T 3khf_A           37 VVWSVEDGSPAQEAGLRAGDLITHINGESVL   67 (99)
T ss_dssp             EEEEECTTSHHHHHTCCTTCEEEEETTEECT
T ss_pred             EEEEECCCCHHHHCCCCCCCEEEEECCEECC
T ss_conf             9989899894684553799999999998989


No 82 
>>2cyj_A Hypothetical protein PH1505; conserved hypothetical protein, structural genomics, NPPSFA; HET: OCS; 1.50A {Pyrococcus horikoshii OT3} (A:)
Probab=28.40  E-value=30  Score=14.30  Aligned_cols=15  Identities=13%  Similarity=-0.086  Sum_probs=10.1

Q ss_pred             CCEEEEEECCCHHHC
Q ss_conf             445999944881558
Q gi|254780392|r   68 WDRLVVAGIGDPRDA   82 (494)
Q Consensus        68 ~~rViLVGLG~~~~~   82 (494)
                      ...++++|+|+...+
T Consensus        60 ~peiliiGtG~~~~~   74 (118)
T 2cyj_A           60 DFDVLLVGTGIYGML   74 (118)
T ss_dssp             CCSEEEEEECTTCCC
T ss_pred             CCCEEEEECCCCCCC
T ss_conf             997899935886556


No 83 
>>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:)
Probab=28.28  E-value=6.8  Score=18.82  Aligned_cols=32  Identities=19%  Similarity=0.249  Sum_probs=24.0

Q ss_pred             EEEEEECCCCCCCCCCCHHHHHCCCCCCEEEE
Q ss_conf             99864102668999747077630248958886
Q gi|254780392|r  307 IGVLALVENMPGSSAQRPGDIVRSMSGQTIEV  338 (494)
Q Consensus       307 ~~~~~~~EN~~~~~a~~pgdvi~~~~G~tvei  338 (494)
                      +.+.-..+|+|-..-.+|||+|..-||+.|+=
T Consensus        48 ~~V~~V~~gspA~~gl~~GD~Il~InG~~v~~   79 (117)
T 2csj_A           48 IVISDVLPGGPADGLLQENDRVVMVNGTPMED   79 (117)
T ss_dssp             CEEEEECTTSSHHHHBCTTCEEEEESSCBCBT
T ss_pred             EEEEEECCCCCHHCCCCCCCEEEEECCEECCC
T ss_conf             89989789980003899998998989974589


No 84 
>>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} (A:)
Probab=27.75  E-value=14  Score=16.58  Aligned_cols=29  Identities=24%  Similarity=0.378  Sum_probs=19.7

Q ss_pred             EEEECCCCCCCCC-CCHHHHHCCCCCCEEE
Q ss_conf             8641026689997-4707763024895888
Q gi|254780392|r  309 VLALVENMPGSSA-QRPGDIVRSMSGQTIE  337 (494)
Q Consensus       309 ~~~~~EN~~~~~a-~~pgdvi~~~~G~tve  337 (494)
                      |.-..+|.|..+| .+|||+|.+-||+.|.
T Consensus        42 V~~V~~gspA~~aGL~~GD~Iv~InG~~v~   71 (114)
T 2edz_A           42 IRVIEEGSPAEKAGLLDGDRVLRINGVFVD   71 (114)
T ss_dssp             EECCCTTCTTGGGTCCTTCEEEEESSSBCS
T ss_pred             EEEECCCCHHHHCCCCCCCEEEEECCCCCC
T ss_conf             999468898998699878999998487134


No 85 
>>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-fuoric acid, oxidoreductase; HET: FAD; 1.30A {Bacillus SP} (A:88-143,A:218-322)
Probab=27.46  E-value=21  Score=15.40  Aligned_cols=120  Identities=15%  Similarity=0.212  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHH------HHHCCCCCCCEEEEEECCCCCC-----CCCCEEE--EEC
Q ss_conf             99999999986113321000011100013458988------7420257785068862057886-----5651266--302
Q gi|254780392|r  194 TDEFCKQVRKLESLGVAVEILDKEAMHKLGMNALL------AVAQGSSRPPYLAVMKWEGGDS-----EEQPLAF--IGK  260 (494)
Q Consensus       194 P~~lA~~a~~l~~~gl~v~Vld~~~L~klGMg~ll------aVgqGS~~~Prli~l~Y~g~~~-----~~~piaL--VGK  260 (494)
                      ++++...++.++++|+.+|+|+.+++.+. ++.|-      ||=+-.-++=|.++--|+....     ..=|+-+  .+-
T Consensus        11 ~~~~~~~~~~a~~~~i~~e~L~~~~~~~R-fP~f~~~~~~~~~~e~~L~v~r~~v~~f~~~~~~~~~~~~fPvfi~~~~~   89 (161)
T 2gf3_A           11 SAFVAETMEAAKEHSLTVDLLEGDEINKR-WPGITVPENYNAIFEPNLQPYRQVVGFFESDESKYSNDIDFPGFMVEVPN   89 (161)
T ss_dssp             CHHHHHHHHHHHHTTCCCEEEETHHHHHH-STTCCCCTTEEEEEETTCEEEEEEEEEECCCHHHHBGGGTCCEEEEEETT
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCHHHCCCCCCCCCCEECCC
T ss_conf             56788877765304764222222222222-22234553322111122478986677640670331134577643033598


Q ss_pred             CE--------------EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC----CCEEEEEEECCCCCC
Q ss_conf             11--------------20066310033332002322112356899999999870878----728998641026689
Q gi|254780392|r  261 GV--------------VFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAK----INAIGVLALVENMPG  318 (494)
Q Consensus       261 Gv--------------TFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~----v~v~~~~~~~EN~~~  318 (494)
                      |-              -++.||--+.|.    ....+......-...++...+.-+|    .-+..-.|+--|-|+
T Consensus        90 ~~~YGfP~~~~~g~Ki~~~~~g~~~~pd----~~~~~~~~~~~~~~~l~~~i~~~~Pgl~~~p~~~~~C~YT~TPD  161 (161)
T 2gf3_A           90 GIYYGFPSFGGCGLKLGYHTFGQKIDPD----TINREFGVYPEDESNLRAFLEEYMPGANGELKRGAVCMYTKTLD  161 (161)
T ss_dssp             EEEEEECBSTTCCEEEEESSCCEECCTT----TCCCCTTSSHHHHHHHHHHHHHHCGGGCSCEEEEEEEEEEECTT
T ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCC
T ss_conf             4089620335545432134555665655----53223564278898876654114653344303578887246888


No 86 
>>1gmu_A UREE; metallochaperone; 1.5A {Klebsiella aerogenes} (A:1-69)
Probab=27.34  E-value=25  Score=14.84  Aligned_cols=26  Identities=19%  Similarity=0.316  Sum_probs=20.9

Q ss_pred             CCCCCCCCCCHHHHHCCCCCCEEEEE
Q ss_conf             26689997470776302489588863
Q gi|254780392|r  314 ENMPGSSAQRPGDIVRSMSGQTIEVI  339 (494)
Q Consensus       314 EN~~~~~a~~pgdvi~~~~G~tvei~  339 (494)
                      =+.|-+...++||++.+-+|..|+|.
T Consensus        42 l~LpRg~~L~~GD~L~~edG~~v~V~   67 (69)
T 1gmu_A           42 LLLPRGLLLRGGDVLSNEEGTEFVQV   67 (69)
T ss_dssp             EECCSSCCCCTTCEEECTTSCCEEEE
T ss_pred             EECCCCCEECCCCEEEECCCCEEEEE
T ss_conf             99899818389999995999859999


No 87 
>>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION, transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A* 1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A* 1yhj_A* (A:)
Probab=27.18  E-value=32  Score=14.09  Aligned_cols=13  Identities=31%  Similarity=0.641  Sum_probs=5.8

Q ss_pred             EEEEECCEEECCC
Q ss_conf             2663021120066
Q gi|254780392|r  255 LAFIGKGVVFDTG  267 (494)
Q Consensus       255 iaLVGKGvTFDtG  267 (494)
                      +=-+|=|=+|-+|
T Consensus       228 vDttGAGDaF~Ag  240 (312)
T 2yxt_A          228 AVFVGTGDLFAAM  240 (312)
T ss_dssp             SCCSSHHHHHHHH
T ss_pred             CCCCCHHHHHHHH
T ss_conf             9977777999999


No 88 
>>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} (A:)
Probab=27.15  E-value=24  Score=14.91  Aligned_cols=34  Identities=12%  Similarity=0.155  Sum_probs=24.0

Q ss_pred             EEEEEECCCCCCCCC-CCHHHHHCCCCCCEEEEEC
Q ss_conf             998641026689997-4707763024895888634
Q gi|254780392|r  307 IGVLALVENMPGSSA-QRPGDIVRSMSGQTIEVIN  340 (494)
Q Consensus       307 ~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tvei~n  340 (494)
                      +.|.-+.+|.|...| .+|||+|.+-||+.|+-.+
T Consensus        43 i~V~~v~~~spA~~aGl~~GD~Il~VNg~~v~~~~   77 (114)
T 1x5n_A           43 IFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLD   77 (114)
T ss_dssp             EEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCC
T ss_pred             EEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCC
T ss_conf             89999889997894698789895645997668998


No 89 
>>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* (A:1-68,A:196-421)
Probab=27.03  E-value=36  Score=13.73  Aligned_cols=153  Identities=14%  Similarity=0.111  Sum_probs=85.7

Q ss_pred             HHHHHHHHHCCCCCEEECHHH--HHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCC---
Q ss_conf             999986420212540302999--9999998-6113321000011100013458988742025778506886205788---
Q gi|254780392|r  176 KGVNLARDIINEPANVLGTDE--FCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGD---  249 (494)
Q Consensus       176 egv~lARDLvN~PaN~ltP~~--lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~Prli~l~Y~g~~---  249 (494)
                      +-+.+.++|+.-|.=--+|.+  .++...+ |++.|+++++..-+...-..-      .......-.=|+-+.+|..   
T Consensus        17 ~~~~~l~~l~~~ps~~g~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~------~~~~~~~~~NVi~~~~g~~~~~   90 (294)
T 2ek8_A           17 NMYNTIQFLSQAPRVAGSPEELKAVRYIEQQFKSYGYHVEVQPFQFEGYTAP------AEVKTLTSHNVIATKKPDANKK   90 (294)
T ss_dssp             HHHHHHHHHTTSCCCTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEECC------CEEEEEEEEEEEEEECCCSSTT
T ss_pred             HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECC------CCCCCCCCCEEEEEEECCCCCC
T ss_conf             9999999981899879999999999999999996799179988998647527------2335531010578996167877


Q ss_pred             CCCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC--CCCCCCCCHHHH
Q ss_conf             656512663021120066310033332002322112356899999999870878728998641026--689997470776
Q gi|254780392|r  250 SEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVEN--MPGSSAQRPGDI  327 (494)
Q Consensus       250 ~~~~piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~~~~~EN--~~~~~a~~pgdv  327 (494)
                      ..++.|.|-+-   +||=.    ++.|-.+|   .+|-|+++.+++.+.+.+++.+|+.+.-..|-  +.++..| --+.
T Consensus        91 ~~~~~Iii~aH---~D~v~----~g~Ga~D~---~sg~a~~Leaa~~l~~~~~~~~I~fv~~~~EE~g~~Gs~~~-~~~~  159 (294)
T 2ek8_A           91 NTNDIIIIGSH---HDSVE----KAPGANDD---ASGVAVTLELARVMSKLKTDTELRFITFGAEENGLIGSKKY-AASL  159 (294)
T ss_dssp             CCCCEEEEEEE---CCCCT----TCCCTTTT---HHHHHHHHHHHHHHTTSCCSSEEEEEEESSSTTTSHHHHHH-HTTC
T ss_pred             CCCCEEEEECC---CCCCC----CCCCCCCC---CCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHH-HHHH
T ss_conf             88747999415---03205----57776686---42017999999986401677617999962540234424899-9876


Q ss_pred             HCCCCCCEEEEECCCCCC
Q ss_conf             302489588863478664
Q gi|254780392|r  328 VRSMSGQTIEVINTDAEG  345 (494)
Q Consensus       328 i~~~~G~tvei~nTDAEG  345 (494)
                      ........+.++|.|..|
T Consensus       160 ~~~~~~~~~~~i~~d~~g  177 (294)
T 2ek8_A          160 SEDEIKRTIGMFQLDMVG  177 (294)
T ss_dssp             CHHHHHHEEEEEEECSCC
T ss_pred             HHHHHHCEEEEECCCCCC
T ss_conf             553131188751243223


No 90 
>>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} (A:)
Probab=26.51  E-value=7.5  Score=18.51  Aligned_cols=33  Identities=21%  Similarity=0.290  Sum_probs=23.5

Q ss_pred             EEEEEECCCCCCCCC-CCHHHHHCCCCCCEEEEE
Q ss_conf             998641026689997-470776302489588863
Q gi|254780392|r  307 IGVLALVENMPGSSA-QRPGDIVRSMSGQTIEVI  339 (494)
Q Consensus       307 ~~~~~~~EN~~~~~a-~~pgdvi~~~~G~tvei~  339 (494)
                      +-+.-..+|.|...| .+|||+|...||++|+=.
T Consensus        29 ~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~   62 (89)
T 2q3g_A           29 LSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSL   62 (89)
T ss_dssp             EEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGC
T ss_pred             EEEEEECCCCHHHHCCCCCCCEEEEECCEECCCC
T ss_conf             6999974898467568789999999999781899


No 91 
>>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} (A:)
Probab=26.16  E-value=8.6  Score=18.09  Aligned_cols=15  Identities=20%  Similarity=0.348  Sum_probs=6.9

Q ss_pred             CCHHHHHCCCCCCEE
Q ss_conf             470776302489588
Q gi|254780392|r  322 QRPGDIVRSMSGQTI  336 (494)
Q Consensus       322 ~~pgdvi~~~~G~tv  336 (494)
                      .+|||+|.+-||+.|
T Consensus        51 L~~GD~Il~Ing~~v   65 (128)
T 2kjd_A           51 LRAQDRIVEVNGVCM   65 (128)
T ss_dssp             CCTTCEEEEETTEEC
T ss_pred             CCCCCEEEEECCEEE
T ss_conf             999999999999993


No 92 
>>3cyy_A Tight junction protein ZO-1; protein-ligand complex, alternative splicing, cell junction, membrane, phosphoprotein, polymorphism; 2.40A {Homo sapiens} (A:)
Probab=25.80  E-value=8.7  Score=18.04  Aligned_cols=30  Identities=20%  Similarity=0.302  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCCCC--CCHHHHHCCCCCCEEE
Q ss_conf             98641026689997--4707763024895888
Q gi|254780392|r  308 GVLALVENMPGSSA--QRPGDIVRSMSGQTIE  337 (494)
Q Consensus       308 ~~~~~~EN~~~~~a--~~pgdvi~~~~G~tve  337 (494)
                      .|.-..++.|..+|  .+|||+|.+-||+.|+
T Consensus        26 ~V~~V~~~spA~~aG~L~~GD~Ii~iNg~~v~   57 (92)
T 3cyy_A           26 FVKEISQDSLAARDGNIQEGDVVLKINGTVTE   57 (92)
T ss_dssp             EEEEECTTCHHHHSCCCCTTCEEEEETTEECT
T ss_pred             EEEEECCCCHHHHCCCCCCCCEEEEECCEECC
T ss_conf             99998999989984999899999999999967


No 93 
>>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} (A:)
Probab=25.78  E-value=8.8  Score=18.01  Aligned_cols=30  Identities=17%  Similarity=0.281  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCCC-CCCHHHHHCCCCCCEEE
Q ss_conf             9864102668999-74707763024895888
Q gi|254780392|r  308 GVLALVENMPGSS-AQRPGDIVRSMSGQTIE  337 (494)
Q Consensus       308 ~~~~~~EN~~~~~-a~~pgdvi~~~~G~tve  337 (494)
                      .|.-..+|+|... -.+|||+|+.-||+.|.
T Consensus        36 ~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~   66 (98)
T 2jxo_A           36 FIRSVDPDSPAEASGLRAQDRIVEVNGVCME   66 (98)
T ss_dssp             EEEEECTTSHHHHHTCCTTCEEEEETTEECT
T ss_pred             EEEEECCCCHHHHCCCCCCCEEEEECCEECC
T ss_conf             9999989998998799999999999999989


No 94 
>>1l1c_A Transcription antiterminator LICT; protein RNA complex, antiterminator complex, RNA hairpin, transcription/RNA complex; NMR {Bacillus subtilis} (A:)
Probab=25.34  E-value=29  Score=14.33  Aligned_cols=13  Identities=31%  Similarity=0.856  Sum_probs=9.8

Q ss_pred             CCEEEEECCEEEC
Q ss_conf             5126630211200
Q gi|254780392|r  253 QPLAFIGKGVVFD  265 (494)
Q Consensus       253 ~piaLVGKGvTFD  265 (494)
                      +-+.++||||-|-
T Consensus        20 ~E~Iv~GkGIGF~   32 (55)
T 1l1c_A           20 KELVVMGRGLAFQ   32 (55)
T ss_dssp             CEEEEECSSSSTT
T ss_pred             CEEEEEEECCEEC
T ss_conf             9999997141347


No 95 
>>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} (A:)
Probab=24.78  E-value=7.6  Score=18.48  Aligned_cols=30  Identities=17%  Similarity=0.198  Sum_probs=19.9

Q ss_pred             EEEEEEECCCCCCCCCCCHHHHHCCCCCCEEEEECC
Q ss_conf             899864102668999747077630248958886347
Q gi|254780392|r  306 AIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINT  341 (494)
Q Consensus       306 v~~~~~~~EN~~~~~a~~pgdvi~~~~G~tvei~nT  341 (494)
                      ...++.++|||      ++||+|.+.+...+.+.|+
T Consensus        40 ~~~yIla~~g~------~~Gd~i~~~~~~~~~~Gn~   69 (137)
T 1rl2_A           40 EKRYIIAPKNL------KVGXEIXSGPDADIKIGNA   69 (137)
T ss_dssp             CEEEEECCTTC------CTTCEECBSTTCCSCTTCE
T ss_pred             CEEEEECCCCC------CCCEEEECCCCCCCCCCCC
T ss_conf             78999616201------2421683276367473346


No 96 
>>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A (A:17-80)
Probab=24.62  E-value=15  Score=16.34  Aligned_cols=14  Identities=21%  Similarity=0.539  Sum_probs=6.0

Q ss_pred             CHHHHHCCCCCCEE
Q ss_conf             70776302489588
Q gi|254780392|r  323 RPGDIVRSMSGQTI  336 (494)
Q Consensus       323 ~pgdvi~~~~G~tv  336 (494)
                      +|||.|++-+|+.|
T Consensus         5 ~~GD~I~sVdg~~v   18 (64)
T 3id1_A            5 APGTELKAVDGIET   18 (64)
T ss_dssp             CTTCEEEEETTEEC
T ss_pred             CCCCEEEEECCEEC
T ss_conf             98889999999996


No 97 
>>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} (A:)
Probab=24.45  E-value=39  Score=13.41  Aligned_cols=142  Identities=13%  Similarity=0.103  Sum_probs=75.3

Q ss_pred             HHHHHHHCCCCC------EEECHHH--HHHHHHH-HHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCC-EEEEEECCC
Q ss_conf             998642021254------0302999--9999998-61133210000111000134589887420257785-068862057
Q gi|254780392|r  178 VNLARDIINEPA------NVLGTDE--FCKQVRK-LESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPP-YLAVMKWEG  247 (494)
Q Consensus       178 v~lARDLvN~Pa------N~ltP~~--lA~~a~~-l~~~gl~v~Vld~~~L~klGMg~llaVgqGS~~~P-rli~l~Y~g  247 (494)
                      +.+.++|+..|+      ...+|.+  .++..++ |++.|+++++.+-..-                ..+ .=|+-++.|
T Consensus        10 ~~~l~~lv~i~s~~~~~~~~~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~~----------------~~~~~nvia~~~g   73 (284)
T 1tkj_A           10 KAHLTQLSTIAANNGGNRAHGRPGYKASVDYVKAKLDAAGYTTTLQQFTSG----------------GATGYNLIANWPG   73 (284)
T ss_dssp             HHHHHHHHHHHHTTTTCCCTTSHHHHHHHHHHHHHHHHHTCEEEEEEEEET----------------TEEEEEEEEECSC
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECC----------------CCCCEEEEEEEEC
T ss_conf             999999997526899898899999999999999999987991799741115----------------7654016999817


Q ss_pred             CCCCCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECCCCCCCCCC-CH
Q ss_conf             886565126630211200663100333320023221123568999999998708--787289986410266899974-70
Q gi|254780392|r  248 GDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERK--AKINAIGVLALVENMPGSSAQ-RP  324 (494)
Q Consensus       248 ~~~~~~piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~--~~v~v~~~~~~~EN~~~~~a~-~p  324 (494)
                      .. .++.|+|-+-   +|+=.    +..   .=-.|.+|-|+++.+++++.+.+  ++.+|+.+.-..|-..+..+. .-
T Consensus        74 ~~-~~~~i~l~aH---~D~v~----~~~---ga~D~~~gva~~l~~~~~l~~~~~~~~~~i~~~~~~~EE~g~~~~~~~~  142 (284)
T 1tkj_A           74 GD-PNKVLMAGAH---LDSVS----SGA---GINDNGSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEELGLIGSKFYV  142 (284)
T ss_dssp             SE-EEEEEEEEEE---CCCCT----TSC---CTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTSHHHHHHH
T ss_pred             CC-CCCEEEEEEC---CCCCC----CCC---CCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHH
T ss_conf             99-9956999812---02567----765---4578763247999999999860689875447762244410023319999


Q ss_pred             HHHHCCCCCCEEEEECCCCCCE
Q ss_conf             7763024895888634786640
Q gi|254780392|r  325 GDIVRSMSGQTIEVINTDAEGR  346 (494)
Q Consensus       325 gdvi~~~~G~tvei~nTDAEGR  346 (494)
                      ...........+-+.|.|-+|.
T Consensus       143 ~~~~~~~~~~~~~~i~~d~~~~  164 (284)
T 1tkj_A          143 NNLPSADRSKLAGYLNFDMIGS  164 (284)
T ss_dssp             HHSCHHHHTTEEEEEEECCCCC
T ss_pred             HHHHCCCCCCEEEEECCCCCCC
T ss_conf             8521143210677745531424


No 98 
>>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} (A:1-145,A:408-458)
Probab=24.27  E-value=40  Score=13.39  Aligned_cols=116  Identities=13%  Similarity=0.086  Sum_probs=58.0

Q ss_pred             CCCCCEEEEEECCCHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             88744599994488155899999999999998531697489941778999989999999999714777544443643332
Q gi|254780392|r   65 DCVWDRLVVAGIGDPRDANFSWLKAGGSIASYIEEDKNIEIFVDVPEYPITKAEIRDLVLGFMLKTYTFDQYKTKKRESS  144 (494)
Q Consensus        65 g~~~~rViLVGLG~~~~~~~~~~ra~a~~~~~l~~~~~~~v~i~l~~~~~~~~~~~~~~eG~~L~~Y~Fd~yKskk~~~~  144 (494)
                      ...-.||+++|+|.-          +..++..+...+...+.+.-    ......+.++..........+.+....-   
T Consensus        20 ~~~~~kVlIIGaG~v----------g~~~~~~L~~~g~~~I~v~d----~~~~~a~~l~~~~~~~~~~~d~~~~~~l---   82 (196)
T 2axq_A           20 RHMGKNVLLLGSGFV----------AQPVIDTLAANDDINVTVAC----RTLANAQALAKPSGSKAISLDVTDDSAL---   82 (196)
T ss_dssp             ---CEEEEEECCSTT----------HHHHHHHHHTSTTEEEEEEE----SSHHHHHHHHGGGTCEEEECCTTCHHHH---
T ss_pred             CCCCCEEEEECCCHH----------HHHHHHHHHHCCCCEEEEEE----CCHHHHHHHHCCCCCCEEEEECCCHHHH---
T ss_conf             357881999898889----------99999999828993499996----9999999986026983699847998999---


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHH
Q ss_conf             321000133322457737899999999999999998642021254030299999999986
Q gi|254780392|r  145 SPRSKENISVTIVTEMIQQSSQVVADIQSVVKGVNLARDIINEPANVLGTDEFCKQVRKL  204 (494)
Q Consensus       145 ~~~~~~~~~i~~~~~~~~~~~~~i~~~~aiaegv~lARDLvN~PaN~ltP~~lA~~a~~l  204 (494)
                       ........+.+.......      +....-+.+..-++++.+-++.-....+.+.+++-
T Consensus        83 -~~~~~~~DiVI~~~P~~~------h~~va~~~i~~gk~vv~~s~~~~~~~~L~~~ak~~  135 (196)
T 2axq_A           83 -DKVLADNDVVISLIPYTF------HPNVVKSAIRTKTDVVTSSYISPALRELEPEIVKA  135 (196)
T ss_dssp             -HHHHHTSSEEEECSCGGG------HHHHHHHHHHHTCEEEECSCCCHHHHHHHHHHHHH
T ss_pred             -HHHHCCCCEEEECCCHHH------CHHHHHHHHHCCCCEECCHHCCCHHHHHHHHHHCC
T ss_conf             -998618999999988133------69999999974996750400010133320233047


No 99 
>>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} (A:)
Probab=24.19  E-value=39  Score=13.46  Aligned_cols=37  Identities=11%  Similarity=0.070  Sum_probs=31.0

Q ss_pred             CCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCEEEEE
Q ss_conf             2668999747077630248958886347866403652
Q gi|254780392|r  314 ENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILA  350 (494)
Q Consensus       314 EN~~~~~a~~pgdvi~~~~G~tvei~nTDAEGRlvLa  350 (494)
                      -.+.+.+..=|++.|+...|.||++.|++-+---|-.
T Consensus         7 v~~~~~~~~f~p~~i~v~~Gd~V~~~n~~~~~h~vh~   43 (98)
T 1pcs_A            7 MGSDSGALVFEPSTVTIKAGEEVKWVNNKLSPHNIVF   43 (98)
T ss_dssp             ESCTTSCSSEESSEEEECTTCEEEEEECSSCCEEEEE
T ss_pred             ECCCCCCEEEECCEEEECCCCEEEEEECCCCCCCEEE
T ss_conf             6108972688789999999998999788988752477


No 100
>>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} (A:)
Probab=23.96  E-value=40  Score=13.39  Aligned_cols=29  Identities=17%  Similarity=0.092  Sum_probs=22.5

Q ss_pred             CCCCCCCCHHHHHCCCCCCEEEEE--CCCCC
Q ss_conf             689997470776302489588863--47866
Q gi|254780392|r  316 MPGSSAQRPGDIVRSMSGQTIEVI--NTDAE  344 (494)
Q Consensus       316 ~~~~~a~~pgdvi~~~~G~tvei~--nTDAE  344 (494)
                      |.++.+|-|+.++....|.+|||.  |++..
T Consensus         9 ~~~~~~f~p~~~~~~~~G~~v~i~l~N~~~~   39 (128)
T 1nwp_A            9 STDQMSFNTKDIAIDKSCKTFTVELTHSGSL   39 (128)
T ss_dssp             ECTTSCBSCSEEEECTTCSEEEEEEEECSSC
T ss_pred             CCCCCCCCCCEEEEECCCCEEEEEEECCCCC
T ss_conf             4884237265799946995899999868977


No 101
>>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} (A:)
Probab=23.48  E-value=40  Score=13.39  Aligned_cols=40  Identities=15%  Similarity=0.081  Sum_probs=31.3

Q ss_pred             CCCCCCCCHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHH
Q ss_conf             6899974707763024895888634786640365236788
Q gi|254780392|r  316 MPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWY  355 (494)
Q Consensus       316 ~~~~~a~~pgdvi~~~~G~tvei~nTDAEGRlvLaD~l~y  355 (494)
                      +.+.+-.=|++-|+...|.+|.+.|++.+.--+--.....
T Consensus         8 ~~~~~~~f~~~~i~v~~Gd~V~~~n~~~~~h~~~~hg~~~   47 (98)
T 2plt_A            8 ADSGALEFVPKTLTIKSGETVNFVNNAGFPHNIVFDEDAI   47 (98)
T ss_dssp             CTTCCSSEESSEEEECTTCEEEEEECSSCCEEEEECGGGS
T ss_pred             ECCCCEEEECCEEEECCCCEEEEEECCCCCEEEEEECCCC
T ss_conf             1797248858999987999899998998850189945862


No 102
>>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, structural genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} (A:)
Probab=23.11  E-value=8.6  Score=18.09  Aligned_cols=33  Identities=21%  Similarity=0.432  Sum_probs=23.2

Q ss_pred             EEEEEEECCCCCCCCC--CCHHHHHCCCCCCEEEE
Q ss_conf             8998641026689997--47077630248958886
Q gi|254780392|r  306 AIGVLALVENMPGSSA--QRPGDIVRSMSGQTIEV  338 (494)
Q Consensus       306 v~~~~~~~EN~~~~~a--~~pgdvi~~~~G~tvei  338 (494)
                      -+-|.-..+|.|..+|  .+|||+|.+-||..|+=
T Consensus        40 ~~~V~~V~~gspA~~aG~l~~GD~I~~Ing~~v~~   74 (103)
T 2fcf_A           40 GIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRD   74 (103)
T ss_dssp             -EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTT
T ss_pred             CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCC
T ss_conf             98999989999689639984799999999999889


No 103
>>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} (A:)
Probab=22.83  E-value=26  Score=14.71  Aligned_cols=32  Identities=13%  Similarity=0.412  Sum_probs=23.0

Q ss_pred             EEEEEEECCCCCCCCC--CCHHHHHCCCCCCEEE
Q ss_conf             8998641026689997--4707763024895888
Q gi|254780392|r  306 AIGVLALVENMPGSSA--QRPGDIVRSMSGQTIE  337 (494)
Q Consensus       306 v~~~~~~~EN~~~~~a--~~pgdvi~~~~G~tve  337 (494)
                      -+.|..+.+|.|..+|  .+|||.|..-||+.|+
T Consensus        58 ~i~V~~v~~gspA~~aG~L~~GD~Il~VNg~~v~   91 (130)
T 1i16_A           58 PLTINRIFKGAASEQSETVQPGDEILQLGGTAMQ   91 (130)
T ss_dssp             CCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGG
T ss_pred             CCCHHHHHCCCCCCCCCCCCCCHHHHHHCCHHHH
T ss_conf             6236466423221345545871688860557653


No 104
>>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA binding, DNA topology; 3.00A {Escherichia coli} (A:1-13,A:189-316,A:449-463)
Probab=22.63  E-value=26  Score=14.68  Aligned_cols=10  Identities=10%  Similarity=0.172  Sum_probs=4.0

Q ss_pred             CCCEEEEEEC
Q ss_conf             7445999944
Q gi|254780392|r   67 VWDRLVVAGI   76 (494)
Q Consensus        67 ~~~rViLVGL   76 (494)
                      .-.+|++--+
T Consensus        47 e~~~IvItEI   56 (156)
T 1zvu_A           47 EDGAVVISAL   56 (156)
T ss_dssp             ETTEEEEEEC
T ss_pred             CCCEEEEEEC
T ss_conf             4446999944


No 105
>>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:)
Probab=22.61  E-value=24  Score=14.97  Aligned_cols=29  Identities=17%  Similarity=0.306  Sum_probs=15.4

Q ss_pred             EEEECCCCCCCCC---CCHHHHHCCCCCCEEE
Q ss_conf             8641026689997---4707763024895888
Q gi|254780392|r  309 VLALVENMPGSSA---QRPGDIVRSMSGQTIE  337 (494)
Q Consensus       309 ~~~~~EN~~~~~a---~~pgdvi~~~~G~tve  337 (494)
                      |.-+.+|.|..+.   .+|||+|..-||+.|+
T Consensus        48 V~~v~~gs~A~~~~agl~~GD~Il~VNg~~v~   79 (118)
T 2yub_A           48 VKEVNRMHISPNNRNAIHPGDRILEINGTPVR   79 (118)
T ss_dssp             EEECCTTTSCTTHHHHCCTTCCEEEESSSBTT
T ss_pred             EEEECCCCCCHHHHCCCCCCCEEEEECCEEEE
T ss_conf             98788897486875998788898788997720


No 106
>>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} (A:)
Probab=22.24  E-value=11  Score=17.30  Aligned_cols=29  Identities=21%  Similarity=0.373  Sum_probs=17.9

Q ss_pred             EEEECCCCCCCCC-CCHHHHHCCCCCCEEE
Q ss_conf             8641026689997-4707763024895888
Q gi|254780392|r  309 VLALVENMPGSSA-QRPGDIVRSMSGQTIE  337 (494)
Q Consensus       309 ~~~~~EN~~~~~a-~~pgdvi~~~~G~tve  337 (494)
                      +.-..+|.|...| .+|||+|.+-||+.|+
T Consensus        31 V~~V~~gs~A~~aGl~~GD~Il~Ing~~v~   60 (91)
T 1g9o_A           31 IRLVEPGSPAEKAGLLAGDRLVEVNGENVE   60 (91)
T ss_dssp             EEEECTTSHHHHTTCCTTCEEEEETTEECT
T ss_pred             EEEECCCCCHHHCCCCCCCEEEEECCEECC
T ss_conf             999858984665288779899999999998


No 107
>>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} (A:551-675)
Probab=21.74  E-value=44  Score=13.06  Aligned_cols=39  Identities=15%  Similarity=0.159  Sum_probs=21.0

Q ss_pred             CCCCEEEEEECCCHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             8744599994488155899999999999998531697489941778
Q gi|254780392|r   66 CVWDRLVVAGIGDPRDANFSWLKAGGSIASYIEEDKNIEIFVDVPE  111 (494)
Q Consensus        66 ~~~~rViLVGLG~~~~~~~~~~ra~a~~~~~l~~~~~~~v~i~l~~  111 (494)
                      ..-..+++++.|..-.       .+-.++..|++.+..--.++++.
T Consensus        10 ~~g~dv~iia~G~~~~-------~al~Aa~~L~~~gi~~~vi~~~~   48 (125)
T 1itz_A           10 GNKPDLIVMGTGSELE-------IAAKAADELRKEGKTVRVVSFVS   48 (125)
T ss_dssp             TTCCSEEEEECGGGHH-------HHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CCCCCEEEEEEHHHHH-------HHHHHHHHHHHCCCCEEEEECCC
T ss_conf             8999899998739999-------99999999996699879996798


No 108
>>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} (A:)
Probab=21.56  E-value=12  Score=17.09  Aligned_cols=30  Identities=20%  Similarity=0.289  Sum_probs=17.3

Q ss_pred             EEEEECCCCCCCCC--CCHHHHHCCCCCCEEE
Q ss_conf             98641026689997--4707763024895888
Q gi|254780392|r  308 GVLALVENMPGSSA--QRPGDIVRSMSGQTIE  337 (494)
Q Consensus       308 ~~~~~~EN~~~~~a--~~pgdvi~~~~G~tve  337 (494)
                      .|....++.|...+  .+|||+|.+-||+.|.
T Consensus        32 ~V~~v~~gspA~~~G~L~~GD~I~~Vng~~v~   63 (95)
T 2vwr_A           32 FILDLLEGGLAAQDGRLSSNDRVLAINGHDLK   63 (95)
T ss_dssp             EEEEECTTSHHHHHCCCCTTCEEEEETTEECT
T ss_pred             EEEEECCCCHHHHHHHHCCCCEEEEECCEECC
T ss_conf             99998799967843231069799999999988


No 109
>>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} (A:)
Probab=21.19  E-value=12  Score=17.00  Aligned_cols=29  Identities=17%  Similarity=0.193  Sum_probs=17.9

Q ss_pred             EEEECCCCCCCCC-CCHHHHHCCCCCCEEE
Q ss_conf             8641026689997-4707763024895888
Q gi|254780392|r  309 VLALVENMPGSSA-QRPGDIVRSMSGQTIE  337 (494)
Q Consensus       309 ~~~~~EN~~~~~a-~~pgdvi~~~~G~tve  337 (494)
                      |.-+.+|.|...| .+|||+|.+-||+.|.
T Consensus        36 V~~v~~~spA~~~GL~~GD~Ii~vng~~v~   65 (91)
T 1m5z_A           36 VKNIRPAGPGDLGGLKPYDRLLQVNHVRTR   65 (91)
T ss_dssp             EEEECTTSHHHHHTCCTTCEEEEETTEECT
T ss_pred             EEEECCCCHHHHCCCCCCCEEEEECCEECC
T ss_conf             999888993897889999999999999989


No 110
>>1jqg_A Carboxypeptidase A; Pro-protein, hydrolase; 2.50A {Helicoverpa armigera} (A:1-91)
Probab=20.81  E-value=16  Score=16.18  Aligned_cols=53  Identities=15%  Similarity=0.125  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHH-HHCCCCCHHHHCCC
Q ss_conf             999999999999999864202125403029999999998-61133210000111
Q gi|254780392|r  165 SQVVADIQSVVKGVNLARDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKE  217 (494)
Q Consensus       165 ~~~i~~~~aiaegv~lARDLvN~PaN~ltP~~lA~~a~~-l~~~gl~v~Vld~~  217 (494)
                      .+.++..+.--+--++...-.|.|.++|-|....+..++ |++++++.+|+.++
T Consensus        37 ~~~L~~l~~~~~~dfw~~~~~~~~vdimV~p~~~~~f~~~L~~~~i~~~v~i~d   90 (91)
T 1jqg_A           37 VKLVHDFENDLMLDVWSDAVPGRPGKVLVPKFKREIFENFLKQSGVQYKLEVEN   90 (91)
T ss_dssp             HHHHHHHHHHTTCEEEECCBTTBCEEEEECGGGHHHHHHHHHHHTCEEEEEESC
T ss_pred             HHHHHHHHHCCCCEECCCCCCCCEEEEEECHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             999999873327123168889981599979899899999999869868998315


No 111
>>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} (A:57-114)
Probab=20.37  E-value=35  Score=13.79  Aligned_cols=20  Identities=30%  Similarity=0.506  Sum_probs=15.4

Q ss_pred             HHHHHCCCCCCEEEEECCCC
Q ss_conf             07763024895888634786
Q gi|254780392|r  324 PGDIVRSMSGQTIEVINTDA  343 (494)
Q Consensus       324 pgdvi~~~~G~tvei~nTDA  343 (494)
                      |||.|++..|....|....-
T Consensus         1 pGD~I~~~eGw~l~V~~V~E   20 (58)
T 3dmq_A            1 PGDTITSHDGWQXQVEEVKE   20 (58)
T ss_dssp             TTCEEEBTTSCEEEEEEEEC
T ss_pred             CCCEEEECCCCEEEEEEECC
T ss_conf             99989976883799987504


No 112
>>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} (A:)
Probab=20.36  E-value=22  Score=15.21  Aligned_cols=33  Identities=18%  Similarity=0.185  Sum_probs=22.6

Q ss_pred             EEEEEECCCCCCC-CCCCHHHHHCCCCCCEEEEE
Q ss_conf             9986410266899-97470776302489588863
Q gi|254780392|r  307 IGVLALVENMPGS-SAQRPGDIVRSMSGQTIEVI  339 (494)
Q Consensus       307 ~~~~~~~EN~~~~-~a~~pgdvi~~~~G~tvei~  339 (494)
                      +.+.-..+|.|-. .-.+|||+|.+-||+.|.=.
T Consensus        47 v~V~~V~~~spA~~aGl~~GD~Iv~inG~~v~~~   80 (109)
T 1q3o_A           47 QYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKV   80 (109)
T ss_dssp             EEEEEECTTSHHHHTTCCTTCEEEEETTEECTTC
T ss_pred             EEEEEECCCCHHHHCCCCCCCEEEEECCEECCCC
T ss_conf             8999968999899839988999999999998999


No 113
>>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A (A:)
Probab=20.23  E-value=43  Score=13.12  Aligned_cols=14  Identities=14%  Similarity=0.413  Sum_probs=10.6

Q ss_pred             CEEEEEECCCHHHC
Q ss_conf             45999944881558
Q gi|254780392|r   69 DRLVVAGIGDPRDA   82 (494)
Q Consensus        69 ~rViLVGLG~~~~~   82 (494)
                      ..|+++|.|+....
T Consensus        89 peiliiGTG~~~~~  102 (150)
T 3cpk_A           89 PEVLLVGTGRRQHL  102 (150)
T ss_dssp             CSEEEEECTTSCCC
T ss_pred             CCEEEECCCCCCCC
T ss_conf             98999915986678


No 114
>>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} (A:)
Probab=20.21  E-value=16  Score=16.19  Aligned_cols=30  Identities=13%  Similarity=0.175  Sum_probs=17.4

Q ss_pred             EEEEECCCCCCCCC--CCHHHHHCCCCCCEEE
Q ss_conf             98641026689997--4707763024895888
Q gi|254780392|r  308 GVLALVENMPGSSA--QRPGDIVRSMSGQTIE  337 (494)
Q Consensus       308 ~~~~~~EN~~~~~a--~~pgdvi~~~~G~tve  337 (494)
                      .|.-+.+|.|...+  .+|||.|.+-||+.++
T Consensus        58 ~V~~v~~gspA~~~G~L~~GD~Il~INg~~v~   89 (127)
T 1wg6_A           58 FIKSIIHGGAAFKDGRLRMNDQLIAVNGETLL   89 (127)
T ss_dssp             EEEECCSSSSTHHHHTSCSCCBEEEETTEEST
T ss_pred             EEEEECCCCCHHHCCCCCCCCEEEEECCEECC
T ss_conf             99997999861112899999999868998998


No 115
>>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries} (A:1-272,A:464-501)
Probab=20.06  E-value=48  Score=12.82  Aligned_cols=60  Identities=17%  Similarity=0.250  Sum_probs=38.2

Q ss_pred             EECCHHHHHHHHHHH-HHHCCCCCCCCCCHHHHHHHCC-CCCCEECCC-CCCHHHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf             708989999999989-9856971767768678886179-864170188-8746799999999872388676999400
Q gi|254780392|r  387 FANNDVLAEQLLSSG-LSTGELLWRMPMNEEYNKLIES-KFADMKNIG-GRGAGSIVAAQFLEKFVQDASWAHIDIA  460 (494)
Q Consensus       387 ~~n~~~~~~~~~~a~-~~~ge~~w~lPl~~~y~~~~~s-~~AD~~n~~-~~~~g~~~aa~fl~~f~~~~~w~HlDia  460 (494)
                      |+=+......+.+.. +...-++.         =.|-. ++.-+|++| ||++|.-    =++||+ +.+|+-++|-
T Consensus       244 FTGS~~vG~~i~~~aa~~~lk~~~---------lELGG~p~gg~k~sg~g~~~~~~----~~~~~~-~~~~~~~~~~  306 (310)
T 1bxs_A          244 FTGSTEVGKLIKEAAGKSNLKRVS---------LELGGCPFGGFKMSGNGRELGEY----GFHEYT-EVKTVTIKIS  306 (310)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCEEE---------EECCCSCBCCSGGGEESCBSHHH----HHHTTE-EEEEEEEECS
T ss_pred             EECCHHHHHHHHHHHHHCCCCEEE---------EECCCCCCCCCCCCCCCHHHHHH----HHHHHC-CEEEEEEECC
T ss_conf             729769999999973113887499---------97687983774316077366899----999844-7179999768


No 116
>>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A (A:)
Probab=20.04  E-value=13  Score=16.72  Aligned_cols=30  Identities=20%  Similarity=0.321  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCCCC-CCHHHHHCCCCCCEEE
Q ss_conf             98641026689997-4707763024895888
Q gi|254780392|r  308 GVLALVENMPGSSA-QRPGDIVRSMSGQTIE  337 (494)
Q Consensus       308 ~~~~~~EN~~~~~a-~~pgdvi~~~~G~tve  337 (494)
                      -+.-..++.|..+| .+|||+|.+-||..|.
T Consensus        31 ~V~~V~~~spA~~aGl~~GD~I~~ing~~v~   61 (90)
T 2he4_A           31 YIRSVDPGSPAARSGLRAQDRLIEVNGQNVE   61 (90)
T ss_dssp             EEEEECTTSHHHHHTCCTTCEEEEETTEECT
T ss_pred             EEEEECCCCHHHHCCCCCCCEEEEECCEECC
T ss_conf             9999748982786699889999999999989


Done!