HHsearch results for GI: 254780392 and protein with PDBid: 1gyt_A
>1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A {Escherichia coli} SCOP: c.56.5.3 c.50.1.1
Probab=100.00 E-value=0 Score=1197.26 Aligned_cols=485 Identities=34% Similarity=0.550 Sum_probs=438.2
Q ss_pred CEEEEEEECCCCCCCCEEEEEECCCCCC--CCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEECCC
Q ss_conf 9069995077877677169996268663--22221238888999999808998367878998437888744599994488
Q gi|254780392|r 1 MDIKFSFAKNPSIKQEGLAILLKTSFSD--VAGLSLIGSPSIVMRAVSVKNFIGESKSHLNILAPVDCVWDRLVVAGIGD 78 (494)
Q Consensus 1 M~mkis~~~~~~~~~d~lvV~~~~~~~~--~~~~~~~~~~~~L~~~i~~~~F~GK~Ge~l~l~~~~g~~~~rViLVGLG~ 78 (494)
|+++++.......++|+|+|++.++... .....+....+.|+++++..+|+||.||++.++.+.+..++||+|||||+
T Consensus 1 M~~~i~~~~~~~~~sd~LVvgV~e~~~l~~~~~~Ld~~~~g~I~~~lk~~~F~GK~Ge~~~l~~~~g~~a~rIlLVGLGk 80 (503)
T 1gyt_A 1 MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGK 80 (503)
T ss_dssp CEEEEECCCGGGCCSSCEEEEEETTTEECHHHHHHHTTSSSHHHHHHHHTSCCCCTTCEEEEESCTTCSSSEEEEEECCS
T ss_pred CEEEEECCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEECCC
T ss_conf 96799648812046897999984799778899999798767999999738998886988999689987678899997186
Q ss_pred HHHCCH-HHHHHHHHHHHHHHHCCCEEEEECCCCCCC----CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 155899-999999999998531697489941778999----989999999999714777544443643332321000133
Q gi|254780392|r 79 PRDANF-SWLKAGGSIASYIEEDKNIEIFVDVPEYPI----TKAEIRDLVLGFMLKTYTFDQYKTKKRESSSPRSKENIS 153 (494)
Q Consensus 79 ~~~~~~-~~~ra~a~~~~~l~~~~~~~v~i~l~~~~~----~~~~~~~~~eG~~L~~Y~Fd~yKskk~~~~~~~~~~~~~ 153 (494)
.++++. +++++++++++.+++.+.+++.+.++.... ..+.++++++|+.+++|+|++||+++++...+..... .
T Consensus 81 ~~~~~~~~~r~a~~~a~~~l~~~~~~~~~v~l~~~~~~~~~~~~~~~a~~eG~~l~~Y~f~~yktkk~~~~~~~~~~~-~ 159 (503)
T 1gyt_A 81 ERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMV-F 159 (503)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHSCCSEEEECGGGSCBTTBCHHHHHHHHHHHHHHHHCCCCTTCSSCCCCCCCCCEEE-E
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCEEECEECCCCCCCCCCCEEEE-E
T ss_conf 021999999999999999987558864999546434466770999999999998625140000355666667631899-7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHH-CC--CCCHHHHCCCCCCHHHHHHHHHH
Q ss_conf 3224577378999999999999999986420212540302999999999861-13--32100001110001345898874
Q gi|254780392|r 154 VTIVTEMIQQSSQVVADIQSVVKGVNLARDIINEPANVLGTDEFCKQVRKLE-SL--GVAVEILDKEAMHKLGMNALLAV 230 (494)
Q Consensus 154 i~~~~~~~~~~~~~i~~~~aiaegv~lARDLvN~PaN~ltP~~lA~~a~~l~-~~--gl~v~Vld~~~L~klGMg~llaV 230 (494)
...........++.+++++++++||++||||+|+|||+|||++||+++++++ ++ +++|+|+|+++|+++|||+||+|
T Consensus 160 ~~~~~~~~~~~~~~l~~g~aiaegv~lARDLvN~P~N~ltP~~lA~~a~~la~~~~~~v~v~Vld~~~l~~~gmg~llaV 239 (503)
T 1gyt_A 160 NVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAV 239 (503)
T ss_dssp ECSSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCSHHHHHHHHHHHHHHTTTTEEEEEECHHHHHHTTCHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHCCCCEEEEEECHHHHHHCCCCEEEEE
T ss_conf 30464204789999999889999999998763699152584469999999987559966999956899753266002554
Q ss_pred HCCCCCCCEEEEEECCCCC-CCCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 2025778506886205788-656512663021120066310033332002322112356899999999870878728998
Q gi|254780392|r 231 AQGSSRPPYLAVMKWEGGD-SEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGV 309 (494)
Q Consensus 231 gqGS~~~Prli~l~Y~g~~-~~~~piaLVGKGvTFDtGGislKp~~~M~~Mk~DM~GaAav~g~~~aia~l~~~v~v~~~ 309 (494)
||||++|||||+|+|+|.+ +.++||+|||||||||||||||||+.+|++||+||||||+|+|+|+++++|++|+||+++
T Consensus 240 g~GS~~pprlI~l~Y~g~~~~~~~~i~LVGKGITFDTGGisLKp~~~M~~MK~DM~GAAaVlg~~~aia~l~~~~~v~~~ 319 (503)
T 1gyt_A 240 GQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGV 319 (503)
T ss_dssp HHTSSSCCEEEEEEEECCCCTTCCCEEEEEEEEEEECCTTSCCCSTTGGGGGGGGHHHHHHHHHHHHHHHHTCSSEEEEE
T ss_pred CCCCCCCCCCCEEEECCCCCCCCCCEEEECCCEEEECCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 34678998643255148886667855775261377469976357776343727377579999999999983999659999
Q ss_pred EEECCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEC
Q ss_conf 64102668999747077630248958886347866403652367887520796135521112002354317760578708
Q gi|254780392|r 310 LALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFAN 389 (494)
Q Consensus 310 ~~~~EN~~~~~a~~pgdvi~~~~G~tvei~nTDAEGRlvLaD~l~ya~~~~~p~~iid~ATLTGa~~~alG~~~~g~~~n 389 (494)
+|+|||||||+|||||||||+||||||||.||||||||||||+|+|| ++++|+.|||+|||||||++|||++++|+|+|
T Consensus 320 ~~~~EN~~~~~a~~pgDvi~~~~Gktvev~nTDAEGRLvLaD~l~ya-~~~~p~~iid~ATLTGa~~~alG~~~~g~~~n 398 (503)
T 1gyt_A 320 LAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYV-ERFEPEAVIDVATLTGACVIALGHHITGLMAN 398 (503)
T ss_dssp EEEEEECCSTTCCCTTCEEECTTSCEEECSCTTCCHHHHHHHHHHHG-GGGCCSEEEEEECCCHHHHHHHTTTSEEEEES
T ss_pred EECHHCCCCCCCCCCCCEEEECCCCEEEEECCCCCCEEEEECHHHHH-HHHCCCEEEEEHHHHHHHHHHHCCCCCCCCCC
T ss_conf 71401277888998988678169978997304764418874388899-87399857863214667897708864457788
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCC
Q ss_conf 98999999998998569717677686788861798641701888746799999999872388676999400001167888
Q gi|254780392|r 390 NDVLAEQLLSSGLSTGELLWRMPMNEEYNKLIESKFADMKNIGGRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPK 469 (494)
Q Consensus 390 ~~~~~~~~~~a~~~~ge~~w~lPl~~~y~~~~~s~~AD~~n~~~~~~g~~~aa~fl~~f~~~~~w~HlDiag~a~~~~~~ 469 (494)
||+|++++++||+++||++||||||++|+++|||++|||+|+|+|+||+||||+||+|||+++||+|||||||||.+++
T Consensus 399 ~~~~~~~~~~a~~~~ge~~w~lP~~~~y~~~~~s~~AD~~n~~~~~~g~~~aa~FL~~Fv~~~~w~HlDiAg~a~~~~~- 477 (503)
T 1gyt_A 399 HNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGK- 477 (503)
T ss_dssp CHHHHHHHHHHHHHHTCCEEECCCCHHHHGGGCCSSSSEESCCCSTTHHHHHHHHHHTTCTTSCEEEEECTTTSEECGG-
T ss_pred CHHHHHHHHHHHHHHCCCEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC-
T ss_conf 6999999999999838944058798889975799861013589996567899999998679979899925777778999-
Q ss_pred CCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 8889986543589999999976
Q gi|254780392|r 470 EINQSWASGFGVRLLDEFVRAF 491 (494)
Q Consensus 470 ~~~~~g~tg~~vr~l~~~~~~~ 491 (494)
|+|+||||||||+|||+++
T Consensus 478 ---~~g~tG~~vr~l~~~~~~~ 496 (503)
T 1gyt_A 478 ---AKGATGRPVALLAQFLLNR 496 (503)
T ss_dssp ---GCEECCTTHHHHHHHHHHH
T ss_pred ---CCCCCCHHHHHHHHHHHHH
T ss_conf ---9995106799999999987