RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780392|ref|YP_003064805.1| leucyl aminopeptidase
[Candidatus Liberibacter asiaticus str. psy62]
(494 letters)
>gnl|CDD|30609 COG0260, PepB, Leucyl aminopeptidase [Amino acid transport and
metabolism].
Length = 485
Score = 497 bits (1281), Expect = e-141
Identities = 206/494 (41%), Positives = 310/494 (62%), Gaps = 14/494 (2%)
Query: 5 FSFAKNPSIKQEGLAILLKTSFSDVAGLSLIGSPS---IVMRAVSVKNFIGESKSHLNIL 61
F+ + + ++ F+++A ++ I+ + F G++ L +
Sbjct: 1 MEFSVKSGLSAKLSVTIVVGLFAELAAEAIALDEKSEGILSWLLKAGEFSGKAGQVLLLP 60
Query: 62 APVDCVWDRLVVAGIGDPRDANFSWLKAGGSIASYIEEDKNIEIFVDVPEYPITKAEIRD 121
V R+++ G+G + + + +A G+ A +++ K E+ + +PE P +
Sbjct: 61 GSVG-SVKRVLLVGLGKRKLSEDTLRRAAGAAARALKKGKAWEVTLLLPELPAAEI-AAA 118
Query: 122 LVLGFMLKTYTFDQYKTKKRESSSPRSKENISVTIVTEMIQQSSQVVADIQSVVKGVNLA 181
V GF+L +Y FD+YK++K+E KE VT++ + + + + + +++ +GVNLA
Sbjct: 119 AVEGFLLGSYRFDRYKSEKKEPD----KELPKVTLLVPA-KSAEKAIREGEAIAEGVNLA 173
Query: 182 RDIINEPANVLGTDEFCKQVRKLESL-GVAVEILDKEAMHKLGMNALLAVAQGSSRPPYL 240
RD++N PAN+L +E ++ L L GV VE+LD++ + KLGM ALLAV +GS+RPP L
Sbjct: 174 RDLVNTPANILTPEELAERAELLAKLGGVKVEVLDEKDLEKLGMGALLAVGKGSARPPRL 233
Query: 241 AVMKWEGGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAER 300
V+++ G ++P+A +GKG+ FD+GGISIKP+ GM+ MK D+GGAAAV G + LAE
Sbjct: 234 IVLEYNGKGKAKKPIALVGKGITFDSGGISIKPAAGMDTMKYDMGGAAAVLGAMRALAEL 293
Query: 301 KAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHY 360
K +N +GVL VENMP +A RPGD++ SM+G+T+EV+NTDAEGRL+LADAL Y
Sbjct: 294 KLPVNVVGVLPAVENMPSGNAYRPGDVITSMNGKTVEVLNTDAEGRLVLADALTYA-EEL 352
Query: 361 NPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLSTGELLWRMPMNEEYNKL 420
P L+ID+ATLTGA VV+LGN Y GLF+N+D LA QLL++ TGE LWR+P++EEY K
Sbjct: 353 KPDLIIDVATLTGAAVVALGNDYTGLFSNDDELANQLLAASEETGEPLWRLPLHEEYRKQ 412
Query: 421 IESKFADMKNIGG-RGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPKEINQSWASGF 479
++S FAD+ NIGG R G+I AA FL +FV++ WAH+DIAG A A+G
Sbjct: 413 LKSNFADLANIGGGRFGGAITAALFLSEFVENVPWAHLDIAGTAWKS-GSPYWPKGATGV 471
Query: 480 GVRLLDEFVRAFYE 493
GVR L +F+ E
Sbjct: 472 GVRTLAQFLLNRAE 485
>gnl|CDD|48344 cd00433, Peptidase_M17, Cytosol aminopeptidase family, N-terminal
and catalytic domains. Family M17 contains zinc- and
manganese-dependent exopeptidases ( EC 3.4.11.1),
including leucine aminopeptidase. They catalyze removal
of amino acids from the N-terminus of a protein and play
a key role in protein degradation and in the metabolism
of biologically active peptides. They do not contain
HEXXH motif (which is used as one of the signature
patterns to group the peptidase families) in the
metal-binding site. The two associated zinc ions and the
active site are entirely enclosed within the C-terminal
catalytic domain in leucine aminopeptidase. The enzyme
is a hexamer, with the catalytic domains clustered
around the three-fold axis, and the two trimers related
to one another by a two-fold rotation. The N-terminal
domain is structurally similar to the ADP-ribose binding
Macro domain. This family includes proteins from
bacteria, archaea, animals and plants..
Length = 468
Score = 482 bits (1242), Expect = e-136
Identities = 198/470 (42%), Positives = 294/470 (62%), Gaps = 17/470 (3%)
Query: 23 KTSFSDVAGLSLIGSPSIVMRAVSVKNFIGESKSHLNILAPVDCVWDRLVVAGIGDPRDA 82
+ A S + + F G++ L + A R+ + G+G D
Sbjct: 12 EGGLPPAAEKLDAASSGALAALLKASGFKGKAGETLLLPALGGGA-KRVALVGLGKEEDL 70
Query: 83 N-FSWLKAGGSIASYIEEDKNIEIFVDVPEYPITKAEIRDLVLGFMLKTYTFDQYKTKKR 141
+ + KA G+ A +++ + + VD+P + G +L Y FD+YK+KK+
Sbjct: 71 DVENLRKAAGAAARALKKLGSKSVAVDLPT---LAEDAEAAAEGALLGAYRFDRYKSKKK 127
Query: 142 ESSSPRSKENISVTIVTEMIQQSSQVVADIQSVVKGVNLARDIINEPANVLGTDEFCKQV 201
K + V + + + + +++ +GVNLARD++N PAN L ++
Sbjct: 128 -------KTPLLVVLELGNDKAAEAALERGEAIAEGVNLARDLVNTPANDLTPTYLAEEA 180
Query: 202 RKL-ESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQPLAFIGK 260
++L + LGV VE+LD++ + +LGM ALLAV +GS PP L V++++G + ++P+A +GK
Sbjct: 181 KELAKELGVKVEVLDEKELEELGMGALLAVGKGSEEPPRLIVLEYKGKGASKKPIALVGK 240
Query: 261 GVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSS 320
G+ FDTGG+S+KP+ GM+ MK D+GGAAAV G + +AE K +N +GVL L ENM +
Sbjct: 241 GITFDTGGLSLKPAAGMDGMKYDMGGAAAVLGAMKAIAELKLPVNVVGVLPLAENMISGN 300
Query: 321 AQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLG 380
A RPGD++ S SG+T+E++NTDAEGRL+LADAL Y + + P L+ID+ATLTGA VV+LG
Sbjct: 301 AYRPGDVITSRSGKTVEILNTDAEGRLVLADALTYAQE-FKPDLIIDIATLTGAAVVALG 359
Query: 381 NIYAGLFANNDVLAEQLLSSGLSTGELLWRMPMNEEYNKLIESKFADMKNIGGRG-AGSI 439
+ YAGLF N+D LA+QLL++G ++GE +WR+P+ EEY + ++S AD+KNIGGRG AGSI
Sbjct: 360 HDYAGLFTNDDELAKQLLAAGEASGERVWRLPLWEEYREQLKSDIADLKNIGGRGPAGSI 419
Query: 440 VAAQFLEKFVQDA-SWAHIDIAGVATGGYPKEINQSWASGFGVRLLDEFV 488
AA FL++FV D WAH+DIAG A P A+GFGVRLL EF+
Sbjct: 420 TAALFLKEFVGDGIPWAHLDIAGTAWKSKPG-YLPKGATGFGVRLLVEFL 468
>gnl|CDD|144468 pfam00883, Peptidase_M17, Cytosol aminopeptidase family, catalytic
domain. The two associated zinc ions and the active
site are entirely enclosed within the C-terminal
catalytic domain in leucine aminopeptidase.
Length = 312
Score = 393 bits (1013), Expect = e-110
Identities = 159/314 (50%), Positives = 219/314 (69%), Gaps = 7/314 (2%)
Query: 178 VNLARDIINEPANVLGTDEFCKQVRKL-ESLG-VAVEILDKEAMHKLGMNALLAVAQGSS 235
VNLARD++N PAN+L ++ KL + V +E+LD+E + +LGM LLAV +GS
Sbjct: 1 VNLARDLVNTPANILTPAVLAEEAEKLASNYSDVKIEVLDEEELEELGMGGLLAVNKGSE 60
Query: 236 RPPYLAVMKWEG-GDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLL 294
PP V+ ++G +++ LA +GKG+ FD+GGISIKP GM+ MK D+GGAAAV G +
Sbjct: 61 NPPRFIVLSYKGNKKEDKKKLALVGKGITFDSGGISIKPGAGMDLMKYDMGGAAAVLGAI 120
Query: 295 HVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALW 354
LA+ K +N + VLAL ENM +A RPGDI+ +M+G+T+EV NTDAEGRL+LADAL
Sbjct: 121 KALAQLKPPVNVVAVLALTENMISGTAMRPGDIITAMNGKTVEVNNTDAEGRLVLADALT 180
Query: 355 YCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLSTGELLWRMPMN 414
Y NP ++ID+ATLTGA VV+LG Y G+F+N+D LA +L+ + +GE +WRMP++
Sbjct: 181 YACEL-NPEVIIDVATLTGACVVALGTTYTGIFSNDDELANELIKAAEESGEKVWRMPLH 239
Query: 415 EEYNKLIESKFADMKNIGGR-GAGSIVAAQFLEKFVQDA-SWAHIDIAGVATGGYPKEIN 472
E+Y K ++SK AD+ NIGGR GAG+I AA FL++FV++ WAH+DIAG A K
Sbjct: 240 EDYKKQLKSKVADLANIGGRRGAGAITAALFLKEFVEEGVPWAHLDIAGTAWNK-KKNQW 298
Query: 473 QSWASGFGVRLLDE 486
A+G+GVR L E
Sbjct: 299 PKGATGYGVRTLVE 312
>gnl|CDD|37808 KOG2597, KOG2597, KOG2597, Predicted aminopeptidase of the M17
family [General function prediction only].
Length = 513
Score = 317 bits (813), Expect = 5e-87
Identities = 146/413 (35%), Positives = 220/413 (53%), Gaps = 18/413 (4%)
Query: 87 LKAGGSIASYIEEDKNIEIFVDVPEYPITKAEIRDLVLGFMLKTYTFDQYKTKKRESSSP 146
A A + + V P G L + +++ K+KK S P
Sbjct: 114 RVAARFGARALVLALGRLVPVYSPMD-----YAEQAAEGAALALWRYNRNKSKKNRPSLP 168
Query: 147 RSKENISVTIVTEMIQQSSQVVADIQSVVKGVNLARDIINEPANVLGTDEFCKQVRK-LE 205
+ + + + ++ NLAR + + PAN + +F ++ L
Sbjct: 169 ------KIDLYGSGDGEDAWKRGLFKA--AAQNLARRLGDTPANRMTPTQFAEEAVDVLC 220
Query: 206 SLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQPLAFIGKGVVFD 265
LGV VE+ D+E + + GMN+ LAVA+ S PP L + ++G ++ + +GKGV FD
Sbjct: 221 PLGVTVEVRDEEWIEEQGMNSFLAVAKASCEPPRLLELSYKGTSGADKTILLVGKGVTFD 280
Query: 266 TGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSSAQRPG 325
+GG+SIKP GM+ M+ D+GGAA V G A+ IN VL L ENMP +A +PG
Sbjct: 281 SGGLSIKPKTGMDGMRRDMGGAAVVLGAFRAAAQLSLPINVHAVLPLCENMPSGNATKPG 340
Query: 326 DIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAG 385
D++ +G+T+E+ NTDAEGRL+LADAL Y + P L++D+ATLTGAM ++LG AG
Sbjct: 341 DVITLRNGKTVEINNTDAEGRLVLADALLYAQETLKPKLIVDIATLTGAMRIALGEGAAG 400
Query: 386 LFANNDVLAEQLLSSGLSTGELLWRMPMNEEYNKLIE-SKFADMKNIG-GRGAGSIVAAQ 443
+F N++ L ++L +G+ TG+ +WRMP+ Y K + S AD+ N G GR + S AA
Sbjct: 401 IFTNSEELWKRLQKAGIETGDRVWRMPLFSYYYKAVADSGLADLNNTGSGRASRSCTAAA 460
Query: 444 FLEKFVQDASWAHIDIAGVATGGY--PKEINQSWASGFGVRLLDEFVRAFYEK 494
FL++FV WAH+DIAG +++ +G R L EF+ K
Sbjct: 461 FLKEFVPCLDWAHLDIAGPGHTDIGGTPYLHKGLMTGRPTRTLVEFLYQMSCK 513
>gnl|CDD|145770 pfam02789, Peptidase_M17_N, Cytosol aminopeptidase family,
N-terminal domain.
Length = 126
Score = 63.2 bits (154), Expect = 2e-10
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 37 SPSIVMRAVSVKNFIGESKSHLNILAPVDCVWDRLVVAGIGDPRDANF-SWLKAGGSIAS 95
++ + +F G++ L + + R+++ G+G + + + KA G+ A
Sbjct: 21 LDGLLSELLKEGDFSGKAGETLLLPSLPGVKAKRVLLVGLGKEEELSAEALRKAAGAAAR 80
Query: 96 YIEEDKNIEIFVDVPEYPITKAE-IRDLVLGFMLKTYTFDQYKTKK 140
++ K + VD+P I AE R G +L Y FD+YK+KK
Sbjct: 81 ALKGLKVKTVAVDLPTLNIDAAEDARAAAEGALLGAYRFDRYKSKK 126
>gnl|CDD|153072 cd03602, CLECT_1, C-type lectin (CTL)/C-type lectin-like (CTLD)
domain subgroup 1; a subgroup of protein domains
homologous to the carbohydrate-recognition domains
(CRDs) of the C-type lectins. CLECT_1: C-type lectin
(CTL)/C-type lectin-like (CTLD) domain subgroup 1; a
subgroup of protein domains homologous to the
carbohydrate-recognition domains (CRDs) of the C-type
lectins. Many CTLDs are calcium-dependent carbohydrate
binding modules; other CTLDs bind protein ligands,
lipids, and inorganic surfaces including CaCO3 and ice.
Animal C-type lectins are involved in such functions as
extracellular matrix organization, endocytosis,
complement activation, pathogen recognition, and
cell-cell interactions. CTLDs may bind a variety of
carbohydrate ligands including mannose,
N-acetylglucosamine, galactose, N-acetylgalactosamine,
and fucose. CTLDs associate with each other through
several different surfaces to form dimers, trimers, or
tetramers from which ligand-binding sites project in
different orientations. In some CTLDs a loop extends to
the adjoining domain to form a loop-swapped dimer.
Length = 108
Score = 31.6 bits (72), Expect = 0.53
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 14/50 (28%)
Query: 351 DALWYCRTHYNPHLMIDLAT---------LTGAMVVSLGNIYAGLFANND 391
+A YCR +Y DLAT L+ VS + GL+ + D
Sbjct: 14 EAQQYCRENY-----TDLATVQNQEDNALLSNLSRVSNSAAWIGLYRDVD 58
>gnl|CDD|35672 KOG0451, KOG0451, KOG0451, Predicted 2-oxoglutarate dehydrogenase,
E1 subunit [Carbohydrate transport and metabolism].
Length = 913
Score = 30.8 bits (69), Expect = 1.0
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 395 EQLLSSGLSTGELLW---RMPMNEEYNKLIESKFADMKNIGGRGAGSIVAAQFLEKFVQD 451
E L L E M ++ ++ + +KF +K GG GA S++A F + ++D
Sbjct: 147 ETLDQEQLGKEERCEIAELMLKSQAFDNFLATKFPTVKRYGGEGAESMLA--FFWELLRD 204
Query: 452 ASWAHID 458
++ A+I+
Sbjct: 205 SAQANIE 211
>gnl|CDD|38289 KOG3079, KOG3079, KOG3079, Uridylate kinase/adenylate kinase
[Nucleotide transport and metabolism].
Length = 195
Score = 28.6 bits (64), Expect = 3.9
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 15/94 (15%)
Query: 402 LSTGELLWRMPMNE--EYNKLIESKFADMKNIGGRGAGSIVAAQFLEKFVQDASWAHIDI 459
LS G+LL + E LI+ + G +V + +++A + D
Sbjct: 37 LSAGDLLRAEIASAGSERGALIKEIIKN---------GDLVPVEITLSLLEEAMRSSGDS 87
Query: 460 AGVATGGYPKEINQSWASGFG--VRLLDEFVRAF 491
G GYP+ ++Q F ++ +FV F
Sbjct: 88 NGFLIDGYPRNVDQ--LVEFERKIQGDPDFVLFF 119
>gnl|CDD|31667 COG1478, COG1478, Uncharacterized conserved protein [Function
unknown].
Length = 257
Score = 28.7 bits (64), Expect = 4.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 308 GVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGR 346
G L L+ P +SA+ + +R + G + VI TD GR
Sbjct: 118 GFLLLLPKDPDASAETIRERLRELLGVKVGVIITDTHGR 156
>gnl|CDD|48179 cd02016, TPP_E1_OGDC_like, Thiamine pyrophosphate (TPP) family, E1
of OGDC-like subfamily, TPP-binding module; composed of
proteins similar to the E1 component of the
2-oxoglutarate dehydrogenase multienzyme complex (OGDC).
OGDC catalyzes the oxidative decarboxylation of
2-oxoglutarate to succinyl-CoA and carbon dioxide, a key
reaction of the tricarboxylic acid cycle..
Length = 265
Score = 28.5 bits (64), Expect = 4.6
Identities = 32/148 (21%), Positives = 53/148 (35%), Gaps = 34/148 (22%)
Query: 230 VAQGSSRPPYLAVMKWEGGDSEEQPL--------AFIGKGVVFDTGGISIKPSHGMEEMK 281
V G +R A + G ++ L AF G+GVV++T +S P +
Sbjct: 121 VVMGKTR----AKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYT----- 171
Query: 282 GDLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINT 341
G +H++ N IG + S+ D+ + + V
Sbjct: 172 --------TGGTIHIVVN-----NQIGFTTDPRD--SRSSPYCTDVAKMIGAPIFHVNGD 216
Query: 342 DAEGRLILAD-ALWYCRTHYNPHLMIDL 368
D E + AL Y R + ++IDL
Sbjct: 217 DPEAVVRATRLALEY-RQKFKKDVVIDL 243
>gnl|CDD|38821 KOG3615, KOG3615, KOG3615, Uncharacterized conserved protein
[Function unknown].
Length = 1056
Score = 28.1 bits (62), Expect = 5.7
Identities = 19/105 (18%), Positives = 29/105 (27%), Gaps = 9/105 (8%)
Query: 387 FANNDVLAEQLLSSGLSTGELLWRMPMNEEYNKLIESKFADMKNIGGRGAGSIVAAQFLE 446
ND A LL + L R+ + + G A +
Sbjct: 343 GGRNDRNAVSLLRPTMEHDGHLQRIISSPYTTAPACPTESRRPLFIG-------LAPPIW 395
Query: 447 KFVQDASWAHIDIAGVATGGYPKEINQSWASGFGVRLLDEFVRAF 491
V D A + V + G K I + + RL + R
Sbjct: 396 AEVVD--TACASVDSVRSHGQTKSILRLTVTCINTRLKLQQNRQL 438
>gnl|CDD|35671 KOG0450, KOG0450, KOG0450, 2-oxoglutarate dehydrogenase, E1 subunit
[Carbohydrate transport and metabolism].
Length = 1017
Score = 28.0 bits (62), Expect = 6.6
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 24/115 (20%)
Query: 256 AFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVEN 315
AF G+GVV++T +S PS+ G +HV+ N IG +
Sbjct: 412 AFAGQGVVYETFHLSDLPSY-------------TTGGTVHVVVN-----NQIGFTT--DP 451
Query: 316 MPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILAD--ALWYCRTHYNPHLMIDL 368
S+ D+ R ++ V D E + + A W R ++ +++DL
Sbjct: 452 RFARSSPYCTDVARVVNAPIFHVNADDPEAVMHVCKVAAEW--RKTFHKDVVVDL 504
>gnl|CDD|37525 KOG2314, KOG2314, KOG2314, Translation initiation factor 3, subunit
b (eIF-3b) [Translation, ribosomal structure and
biogenesis].
Length = 698
Score = 27.6 bits (61), Expect = 8.9
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 83 NFSWLKAGGSIASYIEEDKNIEIFVDVPEYPITKAEIR 120
+FSW +A + E NI V + E P +K EIR
Sbjct: 351 DFSWSPTSNLLAYWTPETNNIPARVTLMEVP-SKREIR 387
>gnl|CDD|37874 KOG2663, KOG2663, KOG2663, Acetolactate synthase, small subunit
[Amino acid transport and metabolism].
Length = 309
Score = 27.3 bits (60), Expect = 9.0
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 143 SSSPRSKENISVTIVTE--MIQQSSQVVA----DIQSVVKGVNLARDIINEPANVLGTDE 196
S + I+ + E ++ + S V+A +I S+V + + + + GTD
Sbjct: 71 SRQRVKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDG 130
Query: 197 FCKQV-RKLESLGVAVEILD 215
+Q R++E L +LD
Sbjct: 131 VVEQARRQIEDLVNVYAVLD 150
>gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 27.5 bits (61), Expect = 9.5
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 182 RDIINEPANVLGTDEFCKQVRK-LESLGVAVEILDKEAMHKL--GMNALLAVAQG-SSRP 237
I++EP G + +++ + L+ +G+ LD+ H+L G +A+A+ P
Sbjct: 102 GRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-HELSGGQRQRIAIARALIPEP 160
Query: 238 PYL 240
L
Sbjct: 161 KLL 163
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.317 0.134 0.385
Gapped
Lambda K H
0.267 0.0731 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,800,329
Number of extensions: 308846
Number of successful extensions: 693
Number of sequences better than 10.0: 1
Number of HSP's gapped: 673
Number of HSP's successfully gapped: 24
Length of query: 494
Length of database: 6,263,737
Length adjustment: 98
Effective length of query: 396
Effective length of database: 4,146,055
Effective search space: 1641837780
Effective search space used: 1641837780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)