RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780392|ref|YP_003064805.1| leucyl aminopeptidase [Candidatus Liberibacter asiaticus str. psy62] (494 letters) >1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A {Escherichia coli} (A:165-503) Length = 339 Score = 365 bits (937), Expect = e-101 Identities = 145/333 (43%), Positives = 213/333 (63%), Gaps = 9/333 (2%) Query: 166 QVVADIQSVVKGVNLARDIINEPANVLGTDEFCKQVRKL---ESLGVAVEILDKEAMHKL 222 + + ++ G+ A+D+ N P N+ Q R+L S V ++ ++ M +L Sbjct: 8 RAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKEL 67 Query: 223 GMNALLAVAQGSSRPPYLAVMKWEGGDSE-EQPLAFIGKGVVFDTGGISIKPSHGMEEMK 281 GM++ LAV QGS ++V++++G SE +P+ +GKG+ FD+GGISIKPS GM+EMK Sbjct: 68 GMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMK 127 Query: 282 GDLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINT 341 D+ GAAAV G++ ++AE + IN IGVLA ENMPG A RPGD++ +MSGQT+EV+NT Sbjct: 128 YDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNT 187 Query: 342 DAEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSG 401 DAEGRL+L D L Y + P +ID+ATLTGA V++LG+ GL AN++ LA +L+++ Sbjct: 188 DAEGRLVLCDVLTYV-ERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAAS 246 Query: 402 LSTGELLWRMPMNEEYNKLIESKFADMKNIGGRGAGSIVAAQFLEKFVQDASWAHIDIAG 461 +G+ WR+P+ +EY + +ES FADM NIGGR G+I A FL +F + +WAH+DIAG Sbjct: 247 EQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAG 306 Query: 462 VATGGYPKEINQSWASGFGVRLLDEFVRAFYEK 494 A + A+G V LL +F+ Sbjct: 307 TAWRSGKAK----GATGRPVALLAQFLLNRAGF 335 >3kr4_A M17 leucyl aminopeptidase; protease, hydrolase; HET: BES 1PE; 2.00A {Plasmodium falciparum} PDB: 3kqz_A* 3kqx_A* 3kr5_A* (A:194-528) Length = 335 Score = 362 bits (930), Expect = e-101 Identities = 124/332 (37%), Positives = 184/332 (55%), Gaps = 11/332 (3%) Query: 168 VADIQSVVKGVNLARDIINEPANVLGTDEFCKQVRKL-ESLGVAVEILDKEAMHKLGMNA 226 V + G A +I P+N +L + L + +IL + + +L M A Sbjct: 5 VEKARVYYFGTYYASQLIAAPSNYCNPVSLSNAAVELAQKLNLEYKILGVKELEELKMGA 64 Query: 227 LLAVAQGSSRPPYLAVMKWEGGDSEEQPLAFIGKGVVFDTGGISIK--PSHGMEEMKGDL 284 L+V +GS P + ++ ++ +A +GKG+ FD+GG ++K P ++ MK D+ Sbjct: 65 YLSVGKGSMYPNKFIHLTYKSKGDVKKKIALVGKGITFDSGGYNLKAAPGSMIDLMKFDM 124 Query: 285 GGAAAVTGLLHVLAERK-AKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDA 343 G AAV G + + K + + A+ ENM ++ RPGDI+ + +G+TIEV NTDA Sbjct: 125 SGCAAVLGCAYCVGTLKPENVEIHFLSAVCENMVSKNSYRPGDIITASNGKTIEVGNTDA 184 Query: 344 EGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLS 403 EGRL LADAL Y ++D+ATLTGAM+ SLG YAG+F NN+ L ++L S + Sbjct: 185 EGRLTLADALVYA-EKLGVDYIVDIATLTGAMLYSLGTSYAGVFGNNEELINKILQSSKT 243 Query: 404 TGELLWRMPMNEEYNKLIESKFADMKNIG-GRGAGSIVAAQFLEKFVQDASWAHIDIAGV 462 + E +W +P+ EY + SK+AD+ I A SIVA+ FL++FVQ+ +WAHIDIAGV Sbjct: 244 SNEPVWWLPIINEYRATLNSKYADINQISSSVKASSIVASLFLKEFVQNTAWAHIDIAGV 303 Query: 463 ATGGYPKEINQSWASGFGVRLLDEFVRAFYEK 494 + + GFGVRLL EFV Sbjct: 304 SWNFKAR-----KPKGFGVRLLTEFVLNDALH 330 >2hc9_A Leucine aminopeptidase 1; zinc, carbonate, structural genomics, PSI, protein structure initiative; 1.85A {Caenorhabditis elegans} PDB: 2hb6_A (A:155-491) Length = 337 Score = 361 bits (927), Expect = e-100 Identities = 97/338 (28%), Positives = 160/338 (47%), Gaps = 16/338 (4%) Query: 164 SSQVVADIQSVVKGVNLARDIINEPANVLGTDEFCKQVRKL-ESLGVAVEILDKEAMHKL 222 +++ + + + V +I+ PAN+L TD + K+ + G + ++ E + K Sbjct: 2 TNEDAVFLTDLSESVRETARLIDTPANILTTDALVDEAVKVGNATGSKITVIRGEELLKA 61 Query: 223 GMNALLAVAQGSSRPPYLAVMKWEGGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKG 282 G + V + PP V+ + +A +GKGVV+DTGG+ IK GM MK Sbjct: 62 GFGGIYHVGKAGPTPPAFVVLSH-EVPGSTEHIALVGKGVVYDTGGLQIKTKTGMPNMKR 120 Query: 283 DLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTD 342 D+GGAA + L + L +VEN A +P DI++ +SG+T+E+ NTD Sbjct: 121 DMGGAAGMLEAYSALVKHGFSQTLHACLCIVENNVSPIANKPDDIIKMLSGKTVEINNTD 180 Query: 343 AEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGL 402 AEGRLILAD ++Y + + D+ATLTGA G ++ N++ L +++ +G Sbjct: 181 AEGRLILADGVFYAKETLKATTIFDMATLTGAQAWLSGRLHGAAMTNDEQLENEIIKAGK 240 Query: 403 STGELLWRMPMNEE-YNKLIESKFADMKNIG---GRGAGSIVAAQFLEKFVQDA---SWA 455 ++G+L+ M + + ++S ADMKN G S VA + + W Sbjct: 241 ASGDLVAPMLFAPDLFFGDLKSSIADMKNSNLGKMDGPPSAVAGLLIGAHIGFGEGLRWL 300 Query: 456 HIDIAGVATGGYPKEINQSWASGFGVRLLDEFVRAFYE 493 H+DIA A +G+G L + + Sbjct: 301 HLDIAAPA--EVGD-----RGTGYGPALFSTLLGKYTS 331 >3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family, IDP01962, cytoplasm, hydrolase, manganese, metal-binding, protease, structural genomics; HET: PGE PG4; 1.80A {Coxiella burnetii} (A:158-482) Length = 325 Score = 354 bits (909), Expect = 2e-98 Identities = 116/329 (35%), Positives = 176/329 (53%), Gaps = 9/329 (2%) Query: 168 VADIQSVVKGVNLARDIINEPANVLGTDEFCKQVRKL-ESLGVAVEILDKEAMHKLGMNA 226 + + + L RD+IN PA +G E + V+ + + V+I++ + + A Sbjct: 3 RKRVTDWLTTIYLIRDLINTPAEDMGPSELAQAVKHVAKEFEAKVKIIESKDLET-EFPA 61 Query: 227 LLAVAQGSSRPPYLAVMKWEGGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGG 286 + AV + SRPP L +KW + +GKGV FD+GG+ IK GM MK D+GG Sbjct: 62 IYAVGRAGSRPPLLIDLKWGDIK--APKVTLVGKGVCFDSGGLDIKTPGGMLLMKKDMGG 119 Query: 287 AAAVTGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGR 346 AA GL ++ ++ + ++ VEN GS + RPGD+V++ + +TIE+ NTDAEGR Sbjct: 120 AAHALGLARMIMLQQLPVRLRLLIPAVENAIGSRSYRPGDVVQTRARKTIEITNTDAEGR 179 Query: 347 LILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLSTGE 406 ++LADAL +P L+ID +TLTGA ++LG LFAN D LA+ L+ + L T + Sbjct: 180 VVLADALAEA-VKEDPDLIIDFSTLTGAARIALGPNLPALFANQDSLAQALIDASLKTDD 238 Query: 407 LLWRMPMNEEYNKLIESKFADMKNIG-GRGAGSIVAAQFLEKFVQ-DASWAHIDIAGVAT 464 LWR+P+ + Y ++S+ AD+ N R AG+I AA FL+ FV WAH DI Sbjct: 239 PLWRLPLFQPYRNYLKSEVADLTNSSQNRMAGAITAALFLQHFVSDQIPWAHFDIFAWNL 298 Query: 465 GGYPKEINQSWASGFGVRLLDEFVRAFYE 493 P +R + ++ Y Sbjct: 299 EDLP--GRPIGGEAMALRAVFHYLEQQYR 325 >3kzw_A Cytosol aminopeptidase; cytoplasm, hydrolase, manganese, metal-binding, protease, structural genomics; 2.70A {Staphylococcus aureus subsp} (A:213-515) Length = 303 Score = 352 bits (905), Expect = 6e-98 Identities = 103/302 (34%), Positives = 166/302 (54%), Gaps = 4/302 (1%) Query: 191 VLGTDEFCKQVRKL-ESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGD 249 VL F + + ++ V V++ D + + G L AV +GS P L + + G D Sbjct: 1 VLTPQTFAEDIVNHFKNTKVKVDVKDYDTLVSEGFGLLQAVGKGSKHKPRLVTITYNGKD 60 Query: 250 SEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGV 309 +E P+A +GKG+ +D+GG SIK +GM MK D+ GAA V G++ + + +N +GV Sbjct: 61 KDEAPIALVGKGITYDSGGYSIKTKNGMATMKFDMCGAANVVGIIEAASRLQLPVNIVGV 120 Query: 310 LALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLA 369 LA ENM ++ +P D+ ++SG+T+EV+NTDAEGRL+LADA++Y Y P +++D A Sbjct: 121 LACAENMINEASMKPDDVFTALSGETVEVMNTDAEGRLVLADAVFYA-NQYQPSVIMDFA 179 Query: 370 TLTGAMVVSLGNIYAGLFANND-VLAEQLLSSGLSTGELLWRMPMNEEYNKLIE-SKFAD 427 TLTGA +V+LG+ A F +N V+ +L E+++ +P+ I+ S AD Sbjct: 180 TLTGAAIVALGDDKAAAFESNSKVILNDILQISSEVDEMVFELPITATERASIKHSDIAD 239 Query: 428 MKNIGGRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPKEINQSWASGFGVRLLDEF 487 + N ++ AA F+ F H DIAG AT +GF + + ++ Sbjct: 240 LVNHTNGQGKALFAASFVTHFSGQTPHIHFDIAGPATTNKASYNGPKGPTGFMIPTIVQW 299 Query: 488 VR 489 ++ Sbjct: 300 LK 301 >1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase (alpha-aminoacylpeptide); 1.60A {Bos taurus} (A:177-484) Length = 308 Score = 345 bits (887), Expect = 6e-96 Identities = 127/308 (41%), Positives = 188/308 (61%), Gaps = 7/308 (2%) Query: 192 LGTDEFCKQVRKL---ESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEG- 247 + +F + V + S+ V I K + + M + L+VA+GS PP + ++G Sbjct: 2 MTPTKFAEIVEENLKSASIKTDVFIRPKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKGS 61 Query: 248 GDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAI 307 ++ E PL F+GKG+ FD+GGISIK + M+ M+ D+GGAA + + A+ IN + Sbjct: 62 PNASEPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATICSAIVSAAKLDLPINIV 121 Query: 308 GVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMID 367 G+ L ENMP A +PGD+VR+ +G+TI+V NTDAEGRLILADAL Y T +NP ++I+ Sbjct: 122 GLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCYAHT-FNPKVIIN 180 Query: 368 LATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLSTGELLWRMPMNEEYNK-LIESKFA 426 ATLTGAM ++LG+ G+F N+ L +L + + TG+ +WRMP+ E Y + +I+ + A Sbjct: 181 AATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHYTRQVIDCQLA 240 Query: 427 DMKNIG-GRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPKEINQSWASGFGVRLLD 485 D+ NIG R AG+ AA FL++FV WAH+DIAGV T + +G R L Sbjct: 241 DVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPYLRKGMAGRPTRTLI 300 Query: 486 EFVRAFYE 493 EF+ F + Sbjct: 301 EFLFRFSQ 308 >3kzw_A Cytosol aminopeptidase; cytoplasm, hydrolase, manganese, metal-binding, protease, structural genomics; 2.70A {Staphylococcus aureus subsp} (A:1-212) Length = 212 Score = 86.7 bits (214), Expect = 7e-18 Identities = 33/195 (16%), Positives = 71/195 (36%), Gaps = 12/195 (6%) Query: 1 MDIKFSFAKNPSIKQEGLAILLKTSFSDVAGLSLIGSPSIVMRAVSVKNFIGESKSHLNI 60 M+ K + + I + I + + + I + R + Sbjct: 25 MNFKLNNTLSNEINTLIIGIPEHLNQLERISFNHIDITESLERLKHQHIIGSKVGKIYTT 84 Query: 61 LAPVDCVWDRLVVAGIGDPRDANF-SWLKAGGSIASYIEEDKNIEIFVDVPEYPITKAE- 118 V RL+ G+G+ + ++ LK G + YI+ + + ++ + + + Sbjct: 85 AFDVQDQTYRLITVGLGNLKTRSYQDMLKIWGHLFQYIKSEHIEDTYLLMDSFISKYDQL 144 Query: 119 ---IRDLVLGFMLKTYTFDQYKTKKRESSSPRSKENISVTIVTEMIQQSSQVVADIQSVV 175 + + TY FD YK+ K+ ++ +++E + + S+ Sbjct: 145 SDVLMACGIQSERATYEFDHYKSSKKAPFKT------NLNLISES-LIELDFIHEGISIG 197 Query: 176 KGVNLARDIINEPAN 190 + +NLARD N P N Sbjct: 198 QSINLARDFSNMPPN 212 >1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A {Escherichia coli} (A:1-164) Length = 164 Score = 70.8 bits (173), Expect = 3e-13 Identities = 24/166 (14%), Positives = 54/166 (32%), Gaps = 11/166 (6%) Query: 1 MDIKFSFAKNPSIKQEGLAILL--KTSFSDVAGLSLIGSPSIVMRAVSVKNFIGESKSHL 58 M+ + + + + S +A S + + G+ L Sbjct: 1 MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTL 60 Query: 59 NILAPVDCVWDRLVVAGIGDPRDANFS-WLKAGGSIASYIEEDKNIEIFVDVPEYPITKA 117 + + + +R+++ G G R+ + + + + + + ++E + E + Sbjct: 61 LLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGR 120 Query: 118 E----IRDLVLGFMLKTYTFDQYKTKKRESSSPRSKENISVTIVTE 159 +R V Y+FDQ KT K E P K + Sbjct: 121 NNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRK----MVFNVP 162 >1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase (alpha-aminoacylpeptide); 1.60A {Bos taurus} (A:1-176) Length = 176 Score = 68.2 bits (166), Expect = 2e-12 Identities = 21/154 (13%), Positives = 44/154 (28%), Gaps = 16/154 (10%) Query: 41 VMRAVSVKNFIGESKSHLNILAPVDCVWDRLVVAGIGDPRDANFSWLKAGGSIASYIEED 100 + +++ ++ + + +VV G+G + Sbjct: 35 LREILNISGPPLKAGKTR-TFYGLHEDFPSVVVVGLGKKTAGIDEQENWHEGKENIRAAV 93 Query: 101 KNIEIFVDVPEYPITKAE----IRDLVLGFMLKTYTFDQYKTKKRESSSPRSKENISVTI 156 + E P + + + G +L Y +D K K++ V Sbjct: 94 AAGCRQIQDLEIPSVEVDPCGDAQAAAEGAVLGLYEYDDLKQKRKV-----------VVS 142 Query: 157 VTEMIQQSSQVVADIQSVVKGVNLARDIINEPAN 190 + + G NLAR ++ PAN Sbjct: 143 AKLHGSEDQEAWQRGVLFASGQNLARRLMETPAN 176 >3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family, IDP01962, cytoplasm, hydrolase, manganese, metal-binding, protease, structural genomics; HET: PGE PG4; 1.80A {Coxiella burnetii} (A:1-157) Length = 157 Score = 49.9 bits (119), Expect = 7e-07 Identities = 17/143 (11%), Positives = 40/143 (27%), Gaps = 17/143 (11%) Query: 1 MDIKFSFAKNPSIKQEGLAILLKTSFSDVAGLSLI-GSPSIVMRAVSVKNFIGESKSHLN 59 + + K+ + I + + + V F+G + + + Sbjct: 23 NAMADCYLT--EKKKNFIPIQP---MMPDELPDWLDTQDARTQQWVKASGFVGLAGTICS 77 Query: 60 ILAPVDCVWDRLVVAGIGDPRDANFSWLKAGGSIASYIEEDKNIEIFVDVPEYPITKAEI 119 I + V+ G+ D G ++ + D + Sbjct: 78 IPESTG--ALQRVLLGVSDYEY-----SWDFGGLSKVLPPGAFQLNRDDFEDD----EYY 126 Query: 120 RDLVLGFMLKTYTFDQYKTKKRE 142 +L F L +Y F+ Y+ + Sbjct: 127 ERALLAFGLGSYQFNAYRKRSPY 149 >3g7t_A Envelope protein; membrane fusion protein, membrane anchor, fusion loop, IGC domain, beta sandwich, glycoprotein, membrane, transmembrane, virion; 3.50A {Dengue virus 1} PDB: 1uzg_A* (A:298-400) Length = 103 Score = 32.4 bits (74), Expect = 0.12 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 16/101 (15%) Query: 4 KFSFAKNPSIKQEGLAIL-LKTSFSD------VAGLSLIGSPSIVMRAVSVKNFIGESKS 56 F K + Q G ++ +K +D + + R V+ + + + Sbjct: 8 SFKLEKEVAETQHGTVLVQVKYEGTDAPCKIPFSSQDE-KGVTQNGRLVTANPIVTDKEK 66 Query: 57 HLNI---LAPVDCVWDRLVVAGIGDPRDANFSWLKAGGSIA 94 +NI + +V G G+ SW K G SI Sbjct: 67 PVNIEAEPPFGESY----IVVGAGEK-ALKLSWFKKGSSIG 102 >3irc_A Envelope protein; viral protein, structural genomics, center for structural genomics of infectious diseases, csgid, ATP- binding, helicase; 2.25A {Dengue virus 1} PDB: 3egp_A (A:) Length = 108 Score = 30.5 bits (69), Expect = 0.56 Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 16/100 (16%) Query: 4 KFSFAKNPSIKQEGLAIL-LKTSFSD------VAGLSLIGSPSIVMRAVSVKNFIGESKS 56 F K + Q G ++ +K +D + + R ++ + + + Sbjct: 14 SFKLEKEVAETQHGTVLVQVKYEGTDAPCKIPFSTQDE-KGATQNGRLITANPIVTDKEK 72 Query: 57 HLNI---LAPVDCVWDRLVVAGIGDPRDANFSWLKAGGSI 93 +NI + +V G G+ SW K G SI Sbjct: 73 PVNIEAEPPFGESY----IVVGAGEK-ALKLSWFKKGSSI 107 >1p58_A Major envelope protein E; flavivirus, flaviviridae, glycoprotein E from TICK-borne encephalitis virus, membrane protein M, cryo-EM; 9.50A {Dengue virus 2 puerto rico} (A:298-397) Length = 100 Score = 29.4 bits (66), Expect = 1.2 Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 16/99 (16%) Query: 4 KFSFAKNPSIKQEGLAIL-LKTSFSD------VAGLSLIGSPSIVMRAVSVKNFIGESKS 56 KF K + Q G ++ ++ + L ++ R ++V + E S Sbjct: 8 KFKVVKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDL-EKRHVLGRLITVNPIVTEKDS 66 Query: 57 HLNILA---PVDCVWDRLVVAGIGDPRDANFSWLKAGGS 92 +NI A D ++ G+ P W K G S Sbjct: 67 PVNIEAEPPFGDSY----IIIGVE-PGQLKLDWFKKGSS 100 >2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Porphyromonas gingivalis W83} (A:1-220) Length = 220 Score = 28.4 bits (63), Expect = 1.8 Identities = 20/132 (15%), Positives = 33/132 (25%), Gaps = 12/132 (9%) Query: 275 HGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQ 334 H A + +A+R + G + G+S D V + + Sbjct: 17 HNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPFKIGXFTGASTGARLDGVLAQADA 76 Query: 335 TIEVIN---TDAEGRLILADALWYCRTH---------YNPHLMIDLATLTGAMVVSLGNI 382 LI + Y H Y + +D+A + A V G I Sbjct: 77 VKFRTPYQSNKDLRNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTEDGKI 136 Query: 383 YAGLFANNDVLA 394 Sbjct: 137 LPTTGVGILPTI 148 >2p5p_A Genome polyprotein; envelope protein, viral protein; 2.80A {West nile virus} (A:) Length = 117 Score = 27.4 bits (61), Expect = 4.3 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 9/104 (8%) Query: 4 KFSFAKNPSIKQEGLAIL-LKTSFSDVA---GLSLIGSPS---IVMRAVSVKNFIGESKS 56 F F P+ G +L L+ + +D +S + S + V R V+V F+ + + Sbjct: 10 AFKFLGTPADTGHGTVVLELQYTGTDGPCKVPISSVASLNDLTPVGRLVTVNPFVSVATA 69 Query: 57 HLNILAPVDCVW-DRLVVAGIGDPRDANFSWLKAGGSIASYIEE 99 + +L ++ + D +V G G+ + N W K+G SI Sbjct: 70 NAKVLIELEPPFGDSYIVVGRGEQQ-INHHWHKSGSSIGKAFTT 112 >1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA binding, DNA topology; 3.00A {Escherichia coli} (A:1-13,A:189-316,A:449-463) Length = 156 Score = 26.7 bits (59), Expect = 6.8 Identities = 7/29 (24%), Positives = 14/29 (48%) Query: 252 EQPLAFIGKGVVFDTGGISIKPSHGMEEM 280 ++ L FIG G+ + T I + ++ Sbjct: 2 DRALPFIGDGLKYPTEAEIITSRAEIRKI 30 >2h0p_A Envelope glycoprotein; beta sandwich, IG-fold, viral protein; NMR {Dengue virus 4} (A:) Length = 112 Score = 26.6 bits (59), Expect = 7.5 Identities = 21/106 (19%), Positives = 33/106 (31%), Gaps = 26/106 (24%) Query: 4 KFSFAKNPSIKQEGLAIL------------LKTSFSDVAGLSLIGSPSIVMRAVSVKNFI 51 KFS K + Q G ++ + DV ++G +S Sbjct: 17 KFSIDKEMAETQHGTTVVKVKYEGAGAPCKVPIEIRDVNKEKVVGRI------ISSTPLA 70 Query: 52 GESKSHLNILA---PVDCVWDRLVVAGIGDPRDANFSWLKAGGSIA 94 + S NI D +V G+G+ W + G SI Sbjct: 71 ENTNSVTNIELEPPFGDSY----IVIGVGNSA-LTLHWFRKGSSIG 111 >2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A (A:248-370) Length = 123 Score = 26.4 bits (58), Expect = 8.1 Identities = 9/91 (9%), Positives = 22/91 (24%), Gaps = 10/91 (10%) Query: 307 IGVLALVENMPGSSA------QRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHY 360 + GSS + G N + + R Sbjct: 36 HFKQKTIAGEIGSSTMPHKVNPIDFENSEGNLGL----SNAVLQHLASKLPVSRWQRDLT 91 Query: 361 NPHLMIDLATLTGAMVVSLGNIYAGLFANND 391 + ++ +L G +++ + G+ Sbjct: 92 DSTVLRNLGVGIGYALIAYQSTLKGVSKLEV 122 >2zyo_A Solute-binding protein; open form, sugar binding protein; HET: GLC; 1.55A {Thermoactinomyces vulgaris} PDB: 2zyk_A* 2zym_A* 2zyn_A* 2dfz_A* (A:174-225,A:356-397) Length = 94 Score = 26.4 bits (58), Expect = 8.3 Identities = 5/28 (17%), Positives = 11/28 (39%) Query: 427 DMKNIGGRGAGSIVAAQFLEKFVQDASW 454 D IG ++ ++K+ +A Sbjct: 24 DPNEIGLNSPEAVQGMNEVQKWFTEARL 51 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.317 0.134 0.385 Gapped Lambda K H 0.267 0.0595 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 3,635,000 Number of extensions: 163588 Number of successful extensions: 467 Number of sequences better than 10.0: 1 Number of HSP's gapped: 433 Number of HSP's successfully gapped: 22 Length of query: 494 Length of database: 4,956,049 Length adjustment: 92 Effective length of query: 402 Effective length of database: 1,845,989 Effective search space: 742087578 Effective search space used: 742087578 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 56 (25.6 bits)