RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780392|ref|YP_003064805.1| leucyl aminopeptidase
[Candidatus Liberibacter asiaticus str. psy62]
         (494 letters)



>1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A
           {Escherichia coli} (A:165-503)
          Length = 339

 Score =  365 bits (937), Expect = e-101
 Identities = 145/333 (43%), Positives = 213/333 (63%), Gaps = 9/333 (2%)

Query: 166 QVVADIQSVVKGVNLARDIINEPANVLGTDEFCKQVRKL---ESLGVAVEILDKEAMHKL 222
           + +    ++  G+  A+D+ N P N+        Q R+L    S  V   ++ ++ M +L
Sbjct: 8   RAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKEL 67

Query: 223 GMNALLAVAQGSSRPPYLAVMKWEGGDSE-EQPLAFIGKGVVFDTGGISIKPSHGMEEMK 281
           GM++ LAV QGS     ++V++++G  SE  +P+  +GKG+ FD+GGISIKPS GM+EMK
Sbjct: 68  GMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMK 127

Query: 282 GDLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINT 341
            D+ GAAAV G++ ++AE +  IN IGVLA  ENMPG  A RPGD++ +MSGQT+EV+NT
Sbjct: 128 YDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNT 187

Query: 342 DAEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSG 401
           DAEGRL+L D L Y    + P  +ID+ATLTGA V++LG+   GL AN++ LA +L+++ 
Sbjct: 188 DAEGRLVLCDVLTYV-ERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAAS 246

Query: 402 LSTGELLWRMPMNEEYNKLIESKFADMKNIGGRGAGSIVAAQFLEKFVQDASWAHIDIAG 461
             +G+  WR+P+ +EY + +ES FADM NIGGR  G+I A  FL +F +  +WAH+DIAG
Sbjct: 247 EQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAG 306

Query: 462 VATGGYPKEINQSWASGFGVRLLDEFVRAFYEK 494
            A      +     A+G  V LL +F+      
Sbjct: 307 TAWRSGKAK----GATGRPVALLAQFLLNRAGF 335


>3kr4_A M17 leucyl aminopeptidase; protease, hydrolase; HET: BES
           1PE; 2.00A {Plasmodium falciparum} PDB: 3kqz_A* 3kqx_A*
           3kr5_A* (A:194-528)
          Length = 335

 Score =  362 bits (930), Expect = e-101
 Identities = 124/332 (37%), Positives = 184/332 (55%), Gaps = 11/332 (3%)

Query: 168 VADIQSVVKGVNLARDIINEPANVLGTDEFCKQVRKL-ESLGVAVEILDKEAMHKLGMNA 226
           V   +    G   A  +I  P+N            +L + L +  +IL  + + +L M A
Sbjct: 5   VEKARVYYFGTYYASQLIAAPSNYCNPVSLSNAAVELAQKLNLEYKILGVKELEELKMGA 64

Query: 227 LLAVAQGSSRPPYLAVMKWEGGDSEEQPLAFIGKGVVFDTGGISIK--PSHGMEEMKGDL 284
            L+V +GS  P     + ++     ++ +A +GKG+ FD+GG ++K  P   ++ MK D+
Sbjct: 65  YLSVGKGSMYPNKFIHLTYKSKGDVKKKIALVGKGITFDSGGYNLKAAPGSMIDLMKFDM 124

Query: 285 GGAAAVTGLLHVLAERK-AKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDA 343
            G AAV G  + +   K   +    + A+ ENM   ++ RPGDI+ + +G+TIEV NTDA
Sbjct: 125 SGCAAVLGCAYCVGTLKPENVEIHFLSAVCENMVSKNSYRPGDIITASNGKTIEVGNTDA 184

Query: 344 EGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLS 403
           EGRL LADAL Y         ++D+ATLTGAM+ SLG  YAG+F NN+ L  ++L S  +
Sbjct: 185 EGRLTLADALVYA-EKLGVDYIVDIATLTGAMLYSLGTSYAGVFGNNEELINKILQSSKT 243

Query: 404 TGELLWRMPMNEEYNKLIESKFADMKNIG-GRGAGSIVAAQFLEKFVQDASWAHIDIAGV 462
           + E +W +P+  EY   + SK+AD+  I     A SIVA+ FL++FVQ+ +WAHIDIAGV
Sbjct: 244 SNEPVWWLPIINEYRATLNSKYADINQISSSVKASSIVASLFLKEFVQNTAWAHIDIAGV 303

Query: 463 ATGGYPKEINQSWASGFGVRLLDEFVRAFYEK 494
           +     +        GFGVRLL EFV      
Sbjct: 304 SWNFKAR-----KPKGFGVRLLTEFVLNDALH 330


>2hc9_A Leucine aminopeptidase 1; zinc, carbonate, structural
           genomics, PSI, protein structure initiative; 1.85A
           {Caenorhabditis elegans} PDB: 2hb6_A (A:155-491)
          Length = 337

 Score =  361 bits (927), Expect = e-100
 Identities = 97/338 (28%), Positives = 160/338 (47%), Gaps = 16/338 (4%)

Query: 164 SSQVVADIQSVVKGVNLARDIINEPANVLGTDEFCKQVRKL-ESLGVAVEILDKEAMHKL 222
           +++    +  + + V     +I+ PAN+L TD    +  K+  + G  + ++  E + K 
Sbjct: 2   TNEDAVFLTDLSESVRETARLIDTPANILTTDALVDEAVKVGNATGSKITVIRGEELLKA 61

Query: 223 GMNALLAVAQGSSRPPYLAVMKWEGGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKG 282
           G   +  V +    PP   V+         + +A +GKGVV+DTGG+ IK   GM  MK 
Sbjct: 62  GFGGIYHVGKAGPTPPAFVVLSH-EVPGSTEHIALVGKGVVYDTGGLQIKTKTGMPNMKR 120

Query: 283 DLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTD 342
           D+GGAA +      L +          L +VEN     A +P DI++ +SG+T+E+ NTD
Sbjct: 121 DMGGAAGMLEAYSALVKHGFSQTLHACLCIVENNVSPIANKPDDIIKMLSGKTVEINNTD 180

Query: 343 AEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGL 402
           AEGRLILAD ++Y +       + D+ATLTGA     G ++     N++ L  +++ +G 
Sbjct: 181 AEGRLILADGVFYAKETLKATTIFDMATLTGAQAWLSGRLHGAAMTNDEQLENEIIKAGK 240

Query: 403 STGELLWRMPMNEE-YNKLIESKFADMKNIG---GRGAGSIVAAQFLEKFVQDA---SWA 455
           ++G+L+  M    + +   ++S  ADMKN       G  S VA   +   +       W 
Sbjct: 241 ASGDLVAPMLFAPDLFFGDLKSSIADMKNSNLGKMDGPPSAVAGLLIGAHIGFGEGLRWL 300

Query: 456 HIDIAGVATGGYPKEINQSWASGFGVRLLDEFVRAFYE 493
           H+DIA  A             +G+G  L    +  +  
Sbjct: 301 HLDIAAPA--EVGD-----RGTGYGPALFSTLLGKYTS 331


>3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family,
           IDP01962, cytoplasm, hydrolase, manganese,
           metal-binding, protease, structural genomics; HET: PGE
           PG4; 1.80A {Coxiella burnetii} (A:158-482)
          Length = 325

 Score =  354 bits (909), Expect = 2e-98
 Identities = 116/329 (35%), Positives = 176/329 (53%), Gaps = 9/329 (2%)

Query: 168 VADIQSVVKGVNLARDIINEPANVLGTDEFCKQVRKL-ESLGVAVEILDKEAMHKLGMNA 226
              +   +  + L RD+IN PA  +G  E  + V+ + +     V+I++ + +      A
Sbjct: 3   RKRVTDWLTTIYLIRDLINTPAEDMGPSELAQAVKHVAKEFEAKVKIIESKDLET-EFPA 61

Query: 227 LLAVAQGSSRPPYLAVMKWEGGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGG 286
           + AV +  SRPP L  +KW         +  +GKGV FD+GG+ IK   GM  MK D+GG
Sbjct: 62  IYAVGRAGSRPPLLIDLKWGDIK--APKVTLVGKGVCFDSGGLDIKTPGGMLLMKKDMGG 119

Query: 287 AAAVTGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGR 346
           AA   GL  ++  ++  +    ++  VEN  GS + RPGD+V++ + +TIE+ NTDAEGR
Sbjct: 120 AAHALGLARMIMLQQLPVRLRLLIPAVENAIGSRSYRPGDVVQTRARKTIEITNTDAEGR 179

Query: 347 LILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLSTGE 406
           ++LADAL       +P L+ID +TLTGA  ++LG     LFAN D LA+ L+ + L T +
Sbjct: 180 VVLADALAEA-VKEDPDLIIDFSTLTGAARIALGPNLPALFANQDSLAQALIDASLKTDD 238

Query: 407 LLWRMPMNEEYNKLIESKFADMKNIG-GRGAGSIVAAQFLEKFVQ-DASWAHIDIAGVAT 464
            LWR+P+ + Y   ++S+ AD+ N    R AG+I AA FL+ FV     WAH DI     
Sbjct: 239 PLWRLPLFQPYRNYLKSEVADLTNSSQNRMAGAITAALFLQHFVSDQIPWAHFDIFAWNL 298

Query: 465 GGYPKEINQSWASGFGVRLLDEFVRAFYE 493
              P            +R +  ++   Y 
Sbjct: 299 EDLP--GRPIGGEAMALRAVFHYLEQQYR 325


>3kzw_A Cytosol aminopeptidase; cytoplasm, hydrolase, manganese,
           metal-binding, protease, structural genomics; 2.70A
           {Staphylococcus aureus subsp} (A:213-515)
          Length = 303

 Score =  352 bits (905), Expect = 6e-98
 Identities = 103/302 (34%), Positives = 166/302 (54%), Gaps = 4/302 (1%)

Query: 191 VLGTDEFCKQVRKL-ESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGD 249
           VL    F + +    ++  V V++ D + +   G   L AV +GS   P L  + + G D
Sbjct: 1   VLTPQTFAEDIVNHFKNTKVKVDVKDYDTLVSEGFGLLQAVGKGSKHKPRLVTITYNGKD 60

Query: 250 SEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGV 309
            +E P+A +GKG+ +D+GG SIK  +GM  MK D+ GAA V G++   +  +  +N +GV
Sbjct: 61  KDEAPIALVGKGITYDSGGYSIKTKNGMATMKFDMCGAANVVGIIEAASRLQLPVNIVGV 120

Query: 310 LALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLA 369
           LA  ENM   ++ +P D+  ++SG+T+EV+NTDAEGRL+LADA++Y    Y P +++D A
Sbjct: 121 LACAENMINEASMKPDDVFTALSGETVEVMNTDAEGRLVLADAVFYA-NQYQPSVIMDFA 179

Query: 370 TLTGAMVVSLGNIYAGLFANND-VLAEQLLSSGLSTGELLWRMPMNEEYNKLIE-SKFAD 427
           TLTGA +V+LG+  A  F +N  V+   +L       E+++ +P+       I+ S  AD
Sbjct: 180 TLTGAAIVALGDDKAAAFESNSKVILNDILQISSEVDEMVFELPITATERASIKHSDIAD 239

Query: 428 MKNIGGRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPKEINQSWASGFGVRLLDEF 487
           + N       ++ AA F+  F       H DIAG AT            +GF +  + ++
Sbjct: 240 LVNHTNGQGKALFAASFVTHFSGQTPHIHFDIAGPATTNKASYNGPKGPTGFMIPTIVQW 299

Query: 488 VR 489
           ++
Sbjct: 300 LK 301


>1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase,
           hydrolase (alpha-aminoacylpeptide); 1.60A {Bos taurus}
           (A:177-484)
          Length = 308

 Score =  345 bits (887), Expect = 6e-96
 Identities = 127/308 (41%), Positives = 188/308 (61%), Gaps = 7/308 (2%)

Query: 192 LGTDEFCKQVRKL---ESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEG- 247
           +   +F + V +     S+   V I  K  + +  M + L+VA+GS  PP    + ++G 
Sbjct: 2   MTPTKFAEIVEENLKSASIKTDVFIRPKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKGS 61

Query: 248 GDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAI 307
            ++ E PL F+GKG+ FD+GGISIK +  M+ M+ D+GGAA +   +   A+    IN +
Sbjct: 62  PNASEPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATICSAIVSAAKLDLPINIV 121

Query: 308 GVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMID 367
           G+  L ENMP   A +PGD+VR+ +G+TI+V NTDAEGRLILADAL Y  T +NP ++I+
Sbjct: 122 GLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCYAHT-FNPKVIIN 180

Query: 368 LATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLSTGELLWRMPMNEEYNK-LIESKFA 426
            ATLTGAM ++LG+   G+F N+  L  +L  + + TG+ +WRMP+ E Y + +I+ + A
Sbjct: 181 AATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHYTRQVIDCQLA 240

Query: 427 DMKNIG-GRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPKEINQSWASGFGVRLLD 485
           D+ NIG  R AG+  AA FL++FV    WAH+DIAGV T        +   +G   R L 
Sbjct: 241 DVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPYLRKGMAGRPTRTLI 300

Query: 486 EFVRAFYE 493
           EF+  F +
Sbjct: 301 EFLFRFSQ 308


>3kzw_A Cytosol aminopeptidase; cytoplasm, hydrolase, manganese,
           metal-binding, protease, structural genomics; 2.70A
           {Staphylococcus aureus subsp} (A:1-212)
          Length = 212

 Score = 86.7 bits (214), Expect = 7e-18
 Identities = 33/195 (16%), Positives = 71/195 (36%), Gaps = 12/195 (6%)

Query: 1   MDIKFSFAKNPSIKQEGLAILLKTSFSDVAGLSLIGSPSIVMRAVSVKNFIGESKSHLNI 60
           M+ K +   +  I    + I    +  +    + I     + R         +       
Sbjct: 25  MNFKLNNTLSNEINTLIIGIPEHLNQLERISFNHIDITESLERLKHQHIIGSKVGKIYTT 84

Query: 61  LAPVDCVWDRLVVAGIGDPRDANF-SWLKAGGSIASYIEEDKNIEIFVDVPEYPITKAE- 118
              V     RL+  G+G+ +  ++   LK  G +  YI+ +   + ++ +  +     + 
Sbjct: 85  AFDVQDQTYRLITVGLGNLKTRSYQDMLKIWGHLFQYIKSEHIEDTYLLMDSFISKYDQL 144

Query: 119 ---IRDLVLGFMLKTYTFDQYKTKKRESSSPRSKENISVTIVTEMIQQSSQVVADIQSVV 175
              +    +     TY FD YK+ K+           ++ +++E        + +  S+ 
Sbjct: 145 SDVLMACGIQSERATYEFDHYKSSKKAPFKT------NLNLISES-LIELDFIHEGISIG 197

Query: 176 KGVNLARDIINEPAN 190
           + +NLARD  N P N
Sbjct: 198 QSINLARDFSNMPPN 212


>1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A
           {Escherichia coli} (A:1-164)
          Length = 164

 Score = 70.8 bits (173), Expect = 3e-13
 Identities = 24/166 (14%), Positives = 54/166 (32%), Gaps = 11/166 (6%)

Query: 1   MDIKFSFAKNPSIKQEGLAILL--KTSFSDVAGLSLIGSPSIVMRAVSVKNFIGESKSHL 58
           M+           +   + + +      S +A      S   +   +      G+    L
Sbjct: 1   MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTL 60

Query: 59  NILAPVDCVWDRLVVAGIGDPRDANFS-WLKAGGSIASYIEEDKNIEIFVDVPEYPITKA 117
            +    + + +R+++ G G  R+ +   + +      + + +  ++E    + E  +   
Sbjct: 61  LLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGR 120

Query: 118 E----IRDLVLGFMLKTYTFDQYKTKKRESSSPRSKENISVTIVTE 159
                +R  V       Y+FDQ KT K E   P  K    +     
Sbjct: 121 NNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRK----MVFNVP 162


>1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase,
           hydrolase (alpha-aminoacylpeptide); 1.60A {Bos taurus}
           (A:1-176)
          Length = 176

 Score = 68.2 bits (166), Expect = 2e-12
 Identities = 21/154 (13%), Positives = 44/154 (28%), Gaps = 16/154 (10%)

Query: 41  VMRAVSVKNFIGESKSHLNILAPVDCVWDRLVVAGIGDPRDANFSWLKAGGSIASYIEED 100
           +   +++     ++         +   +  +VV G+G                 +     
Sbjct: 35  LREILNISGPPLKAGKTR-TFYGLHEDFPSVVVVGLGKKTAGIDEQENWHEGKENIRAAV 93

Query: 101 KNIEIFVDVPEYPITKAE----IRDLVLGFMLKTYTFDQYKTKKRESSSPRSKENISVTI 156
                 +   E P  + +     +    G +L  Y +D  K K++            V  
Sbjct: 94  AAGCRQIQDLEIPSVEVDPCGDAQAAAEGAVLGLYEYDDLKQKRKV-----------VVS 142

Query: 157 VTEMIQQSSQVVADIQSVVKGVNLARDIINEPAN 190
                 +  +          G NLAR ++  PAN
Sbjct: 143 AKLHGSEDQEAWQRGVLFASGQNLARRLMETPAN 176


>3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family,
           IDP01962, cytoplasm, hydrolase, manganese,
           metal-binding, protease, structural genomics; HET: PGE
           PG4; 1.80A {Coxiella burnetii} (A:1-157)
          Length = 157

 Score = 49.9 bits (119), Expect = 7e-07
 Identities = 17/143 (11%), Positives = 40/143 (27%), Gaps = 17/143 (11%)

Query: 1   MDIKFSFAKNPSIKQEGLAILLKTSFSDVAGLSLI-GSPSIVMRAVSVKNFIGESKSHLN 59
             +   +      K+  + I              +    +   + V    F+G + +  +
Sbjct: 23  NAMADCYLT--EKKKNFIPIQP---MMPDELPDWLDTQDARTQQWVKASGFVGLAGTICS 77

Query: 60  ILAPVDCVWDRLVVAGIGDPRDANFSWLKAGGSIASYIEEDKNIEIFVDVPEYPITKAEI 119
           I         + V+ G+ D            G ++  +          D  +        
Sbjct: 78  IPESTG--ALQRVLLGVSDYEY-----SWDFGGLSKVLPPGAFQLNRDDFEDD----EYY 126

Query: 120 RDLVLGFMLKTYTFDQYKTKKRE 142
              +L F L +Y F+ Y+ +   
Sbjct: 127 ERALLAFGLGSYQFNAYRKRSPY 149


>3g7t_A Envelope protein; membrane fusion protein, membrane anchor,
           fusion loop, IGC domain, beta sandwich, glycoprotein,
           membrane, transmembrane, virion; 3.50A {Dengue virus 1}
           PDB: 1uzg_A* (A:298-400)
          Length = 103

 Score = 32.4 bits (74), Expect = 0.12
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 16/101 (15%)

Query: 4   KFSFAKNPSIKQEGLAIL-LKTSFSD------VAGLSLIGSPSIVMRAVSVKNFIGESKS 56
            F   K  +  Q G  ++ +K   +D       +        +   R V+    + + + 
Sbjct: 8   SFKLEKEVAETQHGTVLVQVKYEGTDAPCKIPFSSQDE-KGVTQNGRLVTANPIVTDKEK 66

Query: 57  HLNI---LAPVDCVWDRLVVAGIGDPRDANFSWLKAGGSIA 94
            +NI       +      +V G G+      SW K G SI 
Sbjct: 67  PVNIEAEPPFGESY----IVVGAGEK-ALKLSWFKKGSSIG 102


>3irc_A Envelope protein; viral protein, structural genomics, center
           for structural genomics of infectious diseases, csgid,
           ATP- binding, helicase; 2.25A {Dengue virus 1} PDB:
           3egp_A (A:)
          Length = 108

 Score = 30.5 bits (69), Expect = 0.56
 Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 16/100 (16%)

Query: 4   KFSFAKNPSIKQEGLAIL-LKTSFSD------VAGLSLIGSPSIVMRAVSVKNFIGESKS 56
            F   K  +  Q G  ++ +K   +D       +        +   R ++    + + + 
Sbjct: 14  SFKLEKEVAETQHGTVLVQVKYEGTDAPCKIPFSTQDE-KGATQNGRLITANPIVTDKEK 72

Query: 57  HLNI---LAPVDCVWDRLVVAGIGDPRDANFSWLKAGGSI 93
            +NI       +      +V G G+      SW K G SI
Sbjct: 73  PVNIEAEPPFGESY----IVVGAGEK-ALKLSWFKKGSSI 107


>1p58_A Major envelope protein E; flavivirus, flaviviridae,
           glycoprotein E from TICK-borne encephalitis virus,
           membrane protein M, cryo-EM; 9.50A {Dengue virus 2
           puerto rico} (A:298-397)
          Length = 100

 Score = 29.4 bits (66), Expect = 1.2
 Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 16/99 (16%)

Query: 4   KFSFAKNPSIKQEGLAIL-LKTSFSD------VAGLSLIGSPSIVMRAVSVKNFIGESKS 56
           KF   K  +  Q G  ++ ++              + L     ++ R ++V   + E  S
Sbjct: 8   KFKVVKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDL-EKRHVLGRLITVNPIVTEKDS 66

Query: 57  HLNILA---PVDCVWDRLVVAGIGDPRDANFSWLKAGGS 92
            +NI A     D      ++ G+  P      W K G S
Sbjct: 67  PVNIEAEPPFGDSY----IIIGVE-PGQLKLDWFKKGSS 100


>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta
           protein, structural genomics, PSI-2, protein structure
           initiative; 2.70A {Porphyromonas gingivalis W83}
           (A:1-220)
          Length = 220

 Score = 28.4 bits (63), Expect = 1.8
 Identities = 20/132 (15%), Positives = 33/132 (25%), Gaps = 12/132 (9%)

Query: 275 HGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQ 334
           H           A     +   +A+R    +  G    +    G+S     D V + +  
Sbjct: 17  HNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPFKIGXFTGASTGARLDGVLAQADA 76

Query: 335 TIEVIN---TDAEGRLILADALWYCRTH---------YNPHLMIDLATLTGAMVVSLGNI 382
                          LI   +  Y   H         Y  +  +D+A +  A V   G I
Sbjct: 77  VKFRTPYQSNKDLRNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTEDGKI 136

Query: 383 YAGLFANNDVLA 394
                       
Sbjct: 137 LPTTGVGILPTI 148


>2p5p_A Genome polyprotein; envelope protein, viral protein; 2.80A
           {West nile virus} (A:)
          Length = 117

 Score = 27.4 bits (61), Expect = 4.3
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 9/104 (8%)

Query: 4   KFSFAKNPSIKQEGLAIL-LKTSFSDVA---GLSLIGSPS---IVMRAVSVKNFIGESKS 56
            F F   P+    G  +L L+ + +D      +S + S +    V R V+V  F+  + +
Sbjct: 10  AFKFLGTPADTGHGTVVLELQYTGTDGPCKVPISSVASLNDLTPVGRLVTVNPFVSVATA 69

Query: 57  HLNILAPVDCVW-DRLVVAGIGDPRDANFSWLKAGGSIASYIEE 99
           +  +L  ++  + D  +V G G+ +  N  W K+G SI      
Sbjct: 70  NAKVLIELEPPFGDSYIVVGRGEQQ-INHHWHKSGSSIGKAFTT 112


>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase,
           supercoiling, decatenation, DNA binding, DNA topology;
           3.00A {Escherichia coli} (A:1-13,A:189-316,A:449-463)
          Length = 156

 Score = 26.7 bits (59), Expect = 6.8
 Identities = 7/29 (24%), Positives = 14/29 (48%)

Query: 252 EQPLAFIGKGVVFDTGGISIKPSHGMEEM 280
           ++ L FIG G+ + T    I     + ++
Sbjct: 2   DRALPFIGDGLKYPTEAEIITSRAEIRKI 30


>2h0p_A Envelope glycoprotein; beta sandwich, IG-fold, viral
           protein; NMR {Dengue virus 4} (A:)
          Length = 112

 Score = 26.6 bits (59), Expect = 7.5
 Identities = 21/106 (19%), Positives = 33/106 (31%), Gaps = 26/106 (24%)

Query: 4   KFSFAKNPSIKQEGLAIL------------LKTSFSDVAGLSLIGSPSIVMRAVSVKNFI 51
           KFS  K  +  Q G  ++            +     DV    ++G        +S     
Sbjct: 17  KFSIDKEMAETQHGTTVVKVKYEGAGAPCKVPIEIRDVNKEKVVGRI------ISSTPLA 70

Query: 52  GESKSHLNILA---PVDCVWDRLVVAGIGDPRDANFSWLKAGGSIA 94
             + S  NI       D      +V G+G+       W + G SI 
Sbjct: 71  ENTNSVTNIELEPPFGDSY----IVIGVGNSA-LTLHWFRKGSSIG 111


>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA;
           1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
           (A:248-370)
          Length = 123

 Score = 26.4 bits (58), Expect = 8.1
 Identities = 9/91 (9%), Positives = 22/91 (24%), Gaps = 10/91 (10%)

Query: 307 IGVLALVENMPGSSA------QRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHY 360
                 +    GSS           +      G      N   +          + R   
Sbjct: 36  HFKQKTIAGEIGSSTMPHKVNPIDFENSEGNLGL----SNAVLQHLASKLPVSRWQRDLT 91

Query: 361 NPHLMIDLATLTGAMVVSLGNIYAGLFANND 391
           +  ++ +L    G  +++  +   G+     
Sbjct: 92  DSTVLRNLGVGIGYALIAYQSTLKGVSKLEV 122


>2zyo_A Solute-binding protein; open form, sugar binding protein;
           HET: GLC; 1.55A {Thermoactinomyces vulgaris} PDB:
           2zyk_A* 2zym_A* 2zyn_A* 2dfz_A* (A:174-225,A:356-397)
          Length = 94

 Score = 26.4 bits (58), Expect = 8.3
 Identities = 5/28 (17%), Positives = 11/28 (39%)

Query: 427 DMKNIGGRGAGSIVAAQFLEKFVQDASW 454
           D   IG     ++     ++K+  +A  
Sbjct: 24  DPNEIGLNSPEAVQGMNEVQKWFTEARL 51


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.317    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0595    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,635,000
Number of extensions: 163588
Number of successful extensions: 467
Number of sequences better than 10.0: 1
Number of HSP's gapped: 433
Number of HSP's successfully gapped: 22
Length of query: 494
Length of database: 4,956,049
Length adjustment: 92
Effective length of query: 402
Effective length of database: 1,845,989
Effective search space: 742087578
Effective search space used: 742087578
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.6 bits)