RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780392|ref|YP_003064805.1| leucyl aminopeptidase
[Candidatus Liberibacter asiaticus str. psy62]
(494 letters)
>3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family, IDP01962,
cytoplasm, hydrolase, manganese, metal-binding,
protease, structural genomics; HET: PGE PG4; 1.80A
{Coxiella burnetii}
Length = 482
Score = 436 bits (1124), Expect = e-123
Identities = 134/479 (27%), Positives = 221/479 (46%), Gaps = 39/479 (8%)
Query: 18 LAILLKTSFSDVAGLSLIGSPSIVMRAVSVKNFIGESKSHLNILAPVDCVWDRLVVAGIG 77
+ ++ D L + + V F+G + + +I + + V+ G+
Sbjct: 40 IQPMMPDELPDW----LDTQDARTQQWVKASGFVGLAGTICSIPESTGAL--QRVLLGVS 93
Query: 78 DPRDANFSWLKAGGSIASYIEEDKNIEIFVDVPEYPITKAEIRDLVLGFMLKTYTFDQYK 137
D + + + + ++ D E +L F L +Y F+ Y+
Sbjct: 94 DYEYS-WDFGGLSKVLPP-----GAFQLNRDDFE---DDEYYERALLAFGLGSYQFNAYR 144
Query: 138 TKKRESSSPRSKENISVTIVTEMIQQSSQVVADIQSVVKGVNLARDIINEPANVLGTDEF 197
+ + + + + + L RD+IN PA +G E
Sbjct: 145 KRSPYLAK---------------LFLPQAHRKRVTDWLTTIYLIRDLINTPAEDMGPSEL 189
Query: 198 CKQVRKL-ESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEEQPLA 256
+ V+ + + V+I++ + + A+ AV + SRPP L +KW + +
Sbjct: 190 AQAVKHVAKEFEAKVKIIESKDLET-EFPAIYAVGRAGSRPPLLIDLKWGDIKAP--KVT 246
Query: 257 FIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENM 316
+GKGV FD+GG+ IK GM MK D+GGAA GL ++ ++ + ++ VEN
Sbjct: 247 LVGKGVCFDSGGLDIKTPGGMLLMKKDMGGAAHALGLARMIMLQQLPVRLRLLIPAVENA 306
Query: 317 PGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTGAMV 376
GS + RPGD+V++ + +TIE+ NTDAEGR++LADAL +P L+ID +TLTGA
Sbjct: 307 IGSRSYRPGDVVQTRARKTIEITNTDAEGRVVLADALAEAV-KEDPDLIIDFSTLTGAAR 365
Query: 377 VSLGNIYAGLFANNDVLAEQLLSSGLSTGELLWRMPMNEEYNKLIESKFADMKNIG-GRG 435
++LG LFAN D LA+ L+ + L T + LWR+P+ + Y ++S+ AD+ N R
Sbjct: 366 IALGPNLPALFANQDSLAQALIDASLKTDDPLWRLPLFQPYRNYLKSEVADLTNSSQNRM 425
Query: 436 AGSIVAAQFLEKFVQDA-SWAHIDIAGVATGGYPKEINQSWASGFGVRLLDEFVRAFYE 493
AG+I AA FL+ FV D WAH DI P +R + ++ Y
Sbjct: 426 AGAITAALFLQHFVSDQIPWAHFDIFAWNLEDLP--GRPIGGEAMALRAVFHYLEQQYR 482
>3kr4_A M17 leucyl aminopeptidase; protease, hydrolase; HET: BES 1PE; 2.00A
{Plasmodium falciparum} PDB: 3kqz_A* 3kqx_A* 3kr5_A*
Length = 528
Score = 422 bits (1087), Expect = e-119
Identities = 148/502 (29%), Positives = 246/502 (49%), Gaps = 23/502 (4%)
Query: 1 MDIKFSFAKNPSIKQEGLAILLKTSFSDVAG---LSLIGSPSIV---MRAVSVKNFIGE- 53
+ ++ K +EGL I L + G +S + V ++ +++ F +
Sbjct: 27 IKVQVYDIKGGCNVEEGLTIFLVNNPGKENGPVKISSKVNDKQVSEFLKDENMEKFNVKL 86
Query: 54 SKSHLNILAPVDCVWDRLVVAGIGDPRDANF-SWLKAGGSIASYIEEDKNIEIFVDVPEY 112
S + + + G G D + + S+ + + ++K ++ V V E
Sbjct: 87 GTSKHFYMFNDNKNSVAVGYVGCGSVADLSEADMKRVVLSLVTMLHDNKLSKLTV-VFEI 145
Query: 113 PITKAEIRDLVLGFMLKTYTFDQYKTKKRESSSPRSKENISVTIVTEMIQQSSQVVADIQ 172
+ K R + + T +++K+ + + K + + + V +
Sbjct: 146 NVDKNLFRFFLETLFYEYMTDERFKSTDKNVNMEYIKH---LGVYINNADTYKEEVEKAR 202
Query: 173 SVVKGVNLARDIINEPANVLGTDEFCKQVRKL-ESLGVAVEILDKEAMHKLGMNALLAVA 231
G A +I P+N +L + L + +IL + + +L M A L+V
Sbjct: 203 VYYFGTYYASQLIAAPSNYCNPVSLSNAAVELAQKLNLEYKILGVKELEELKMGAYLSVG 262
Query: 232 QGSSRPPYLAVMKWEGGDSEEQPLAFIGKGVVFDTGGISIK--PSHGMEEMKGDLGGAAA 289
+GS P + ++ ++ +A +GKG+ FD+GG ++K P ++ MK D+ G AA
Sbjct: 263 KGSMYPNKFIHLTYKSKGDVKKKIALVGKGITFDSGGYNLKAAPGSMIDLMKFDMSGCAA 322
Query: 290 VTGLLHVLAERKA-KINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLI 348
V G + + K + + A+ ENM ++ RPGDI+ + +G+TIEV NTDAEGRL
Sbjct: 323 VLGCAYCVGTLKPENVEIHFLSAVCENMVSKNSYRPGDIITASNGKTIEVGNTDAEGRLT 382
Query: 349 LADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLSTGELL 408
LADAL Y ++D+ATLTGAM+ SLG YAG+F NN+ L ++L S ++ E +
Sbjct: 383 LADALVYAE-KLGVDYIVDIATLTGAMLYSLGTSYAGVFGNNEELINKILQSSKTSNEPV 441
Query: 409 WRMPMNEEYNKLIESKFADMKNIGGRG-AGSIVAAQFLEKFVQDASWAHIDIAGVATGGY 467
W +P+ EY + SK+AD+ I A SIVA+ FL++FVQ+ +WAHIDIAGV+
Sbjct: 442 WWLPIINEYRATLNSKYADINQISSSVKASSIVASLFLKEFVQNTAWAHIDIAGVSWNFK 501
Query: 468 PKEINQSWASGFGVRLLDEFVR 489
++ GFGVRLL EFV
Sbjct: 502 ARK-----PKGFGVRLLTEFVL 518
>3h8g_F Cytosol aminopeptidase; cytoplasm, hydrolase, manganese,
metal-bindi protease; HET: BES; 1.50A {Pseudomonas
putida} PDB: 3h8e_A 3h8f_A*
Length = 497
Score = 409 bits (1053), Expect = e-115
Identities = 171/501 (34%), Positives = 267/501 (53%), Gaps = 21/501 (4%)
Query: 1 MDIKFSFAKNPSIKQEGLAILL--KTSFSDVAGLSLIGSPSIVMRAVSVKNFIGESKSHL 58
M++ S+K L I + VA + S + + + G+ L
Sbjct: 1 MELVVKSVAAASVKTATLVIPVGENRKLGAVAKAVDLASEGAISAVLKRGDLAGKPGQTL 60
Query: 59 NILAPVDCVWDRLVVAGIGDPRDAN-FSWLKAGGSIASYIEEDKNIEIFVDVPEYPITK- 116
+ +R+++ G G +W K S+A ++ + + + + +
Sbjct: 61 LLQNLQGLKAERVLLVGSGKDEALGDRTWRKLVASVAGVLKGLNGADAVLALDDVAVNNR 120
Query: 117 ----AEIRDLVLGFMLKTYTFDQYKTKKRESSSPRSKENISVTIVTEMIQQSSQVVADIQ 172
+ R L + Y FD++K++K E PR+ + +++ + + V
Sbjct: 121 DAHYGKYRLLAETLLDGEYVFDRFKSQKVE---PRALKKVTLLADKAGQAEVERAVKHAS 177
Query: 173 SVVKGVNLARDIINEPANVLGTDEFCKQVRKL--ESLGVAVEILDKEAMHKLGMNALLAV 230
++ G+ RD+ N P N+ +Q ++L + VE+LD++ + LGM A AV
Sbjct: 178 AIATGMAFTRDLGNLPPNLCHPSFLAEQAKELGKAHKALKVEVLDEKKIKDLGMGAFYAV 237
Query: 231 AQGSSRPPYLAVMKWEGGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAV 290
QGS +PP L V+ ++GG ++P +GKG+ FDTGGIS+KP GM+EMK D+ GAA+V
Sbjct: 238 GQGSDQPPRLIVLNYQGGKKADKPFVLVGKGITFDTGGISLKPGAGMDEMKYDMCGAASV 297
Query: 291 TGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILA 350
G L + E + +N + +LA ENMP A RPGDIV +MSGQT+E++NTDAEGRL+L
Sbjct: 298 FGTLRAVLELQLPVNLVCLLACAENMPSGGATRPGDIVTTMSGQTVEILNTDAEGRLVLC 357
Query: 351 DALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLSTGELLWR 410
D L Y + P +ID+ATLTGA +V+LG+ GL NND L QLL +G + W+
Sbjct: 358 DTLTYAE-RFKPQAVIDIATLTGACIVALGSHTTGLMGNNDDLVGQLLDAGKRADDRAWQ 416
Query: 411 MPMNEEYNKLIESKFADMKNIGGRGAGSIVAAQFLEKFVQDASWAHIDIAGVA--TGGYP 468
+P+ +EY + ++S FADM NIGG AG+I A FL +F + +WAH+DIAG A +GG
Sbjct: 417 LPLFDEYQEQLDSPFADMGNIGGPKAGTITAGCFLSRFAKAYNWAHMDIAGTAWISGGKD 476
Query: 469 KEINQSWASGFGVRLLDEFVR 489
K A+G V LL +++
Sbjct: 477 K-----GATGRPVPLLTQYLL 492
>3kzw_A Cytosol aminopeptidase; cytoplasm, hydrolase, manganese,
metal-binding, protease, structural genomics; 2.70A
{Staphylococcus aureus subsp}
Length = 515
Score = 408 bits (1050), Expect = e-114
Identities = 135/497 (27%), Positives = 238/497 (47%), Gaps = 18/497 (3%)
Query: 3 IKFSFAKNPSIKQEGLAILL--KTSFSDVAGLSLIGSPSIVMRAVSVKNFIGESKSHLNI 60
+ F S + L I + + + + I + R +
Sbjct: 25 MNFKLNNTLSNEINTLIIGIPEHLNQLERISFNHIDITESLERLKHQHIIGSKVGKIYTT 84
Query: 61 LAPVDCVWDRLVVAGIGDPRDANFS-WLKAGGSIASYIEEDKNIEIFVDVPEYPITKAE- 118
V RL+ G+G+ + ++ LK G + YI+ + + ++ + + +
Sbjct: 85 AFDVQDQTYRLITVGLGNLKTRSYQDMLKIWGHLFQYIKSEHIEDTYLLMDSFISKYDQL 144
Query: 119 ---IRDLVLGFMLKTYTFDQYKTKKRESSSPRSKENISVTIVTEMIQQSSQVVADIQSVV 175
+ + TY FD YK+ K+ ++ +++E + + + + S+
Sbjct: 145 SDVLMACGIQSERATYEFDHYKSSKKA------PFKTNLNLISESLIEL-DFIHEGISIG 197
Query: 176 KGVNLARDIINEPANVLGTDEFCKQVRKL-ESLGVAVEILDKEAMHKLGMNALLAVAQGS 234
+ +NLARD N P NVL F + + ++ V V++ D + + G L AV +GS
Sbjct: 198 QSINLARDFSNMPPNVLTPQTFAEDIVNHFKNTKVKVDVKDYDTLVSEGFGLLQAVGKGS 257
Query: 235 SRPPYLAVMKWEGGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLL 294
P L + + G D +E P+A +GKG+ +D+GG SIK +GM MK D+ GAA V G++
Sbjct: 258 KHKPRLVTITYNGKDKDEAPIALVGKGITYDSGGYSIKTKNGMATMKFDMCGAANVVGII 317
Query: 295 HVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALW 354
+ + +N +GVLA ENM ++ +P D+ ++SG+T+EV+NTDAEGRL+LADA++
Sbjct: 318 EAASRLQLPVNIVGVLACAENMINEASMKPDDVFTALSGETVEVMNTDAEGRLVLADAVF 377
Query: 355 YCRTHYNPHLMIDLATLTGAMVVSLGNIYA-GLFANNDVLAEQLLSSGLSTGELLWRMPM 413
Y Y P +++D ATLTGA +V+LG+ A +N+ V+ +L E+++ +P+
Sbjct: 378 YAN-QYQPSVIMDFATLTGAAIVALGDDKAAAFESNSKVILNDILQISSEVDEMVFELPI 436
Query: 414 NEEYNKLIE-SKFADMKNIGGRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPKEIN 472
I+ S AD+ N ++ AA F+ F H DIAG AT
Sbjct: 437 TATERASIKHSDIADLVNHTNGQGKALFAASFVTHFSGQTPHIHFDIAGPATTNKASYNG 496
Query: 473 QSWASGFGVRLLDEFVR 489
+GF + + ++++
Sbjct: 497 PKGPTGFMIPTIVQWLK 513
>1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A
{Escherichia coli} SCOP: c.56.5.3 c.50.1.1
Length = 503
Score = 406 bits (1045), Expect = e-114
Identities = 167/504 (33%), Positives = 266/504 (52%), Gaps = 19/504 (3%)
Query: 4 KFSFAKNPSIKQEGLAILL----KTSFSDVAGLSLIGSPSIVMRAVSVKNFIGESKSHLN 59
+FS KQ I++ S +A S + + G+ L
Sbjct: 2 EFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLL 61
Query: 60 ILAPVDCVWDRLVVAGIGDPRDAN-FSWLKAGGSIASYIEEDKNIEIFVDVPEYPITKAE 118
+ + + +R+++ G G R+ + + + + + + ++E + E +
Sbjct: 62 LHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRN 121
Query: 119 ----IRDLVLGFMLKTYTFDQYKTKKRESSSPRSKENISVTIVTEMIQQSSQVVADIQSV 174
+R V Y+FDQ KT K ++ + + + + ++
Sbjct: 122 NYWKVRQAVETAKETLYSFDQLKTNK-SEPRRPLRKMVFNVPTRRELTSGERAIQHGLAI 180
Query: 175 VKGVNLARDIINEPANVLGTDEFCKQVR---KLESLGVAVEILDKEAMHKLGMNALLAVA 231
G+ A+D+ N P N+ Q R S V ++ ++ M +LGM++ LAV
Sbjct: 181 AAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVG 240
Query: 232 QGSSRPPYLAVMKWEG-GDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAV 290
QGS ++V++++G + +P+ +GKG+ FD+GGISIKPS GM+EMK D+ GAAAV
Sbjct: 241 QGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAV 300
Query: 291 TGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILA 350
G++ ++AE + IN IGVLA ENMPG A RPGD++ +MSGQT+EV+NTDAEGRL+L
Sbjct: 301 YGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLC 360
Query: 351 DALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLSTGELLWR 410
D L Y + P +ID+ATLTGA V++LG+ GL AN++ LA +L+++ +G+ WR
Sbjct: 361 DVLTYVE-RFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWR 419
Query: 411 MPMNEEYNKLIESKFADMKNIGGRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPKE 470
+P+ +EY + +ES FADM NIGGR G+I A FL +F + +WAH+DIAG A +
Sbjct: 420 LPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAK 479
Query: 471 INQSWASGFGVRLLDEFVRAFYEK 494
A+G V LL +F+
Sbjct: 480 ----GATGRPVALLAQFLLNRAGF 499
>3jru_B Probable cytosol aminopeptidase; bacterial blight, XOO0834, PEPA,
xanthomonas oryzae PV. ORYZ KACC10331, hydrolase,
manganese; 2.60A {Xanthomonas oryzae PV}
Length = 490
Score = 391 bits (1005), Expect = e-109
Identities = 163/500 (32%), Positives = 253/500 (50%), Gaps = 25/500 (5%)
Query: 1 MDIKFSFAKNPSIKQEGLAILL----KTSFSDVAGLSLIGSPSIVMRAVSVKNFIGESKS 56
M ++F+ ++ I++ + S A S + ++ + G++ S
Sbjct: 1 MALQFTLNQDAPASAAVDCIVVGAFADKTLSPAAQALDSASQGRLTALLARGDVAGKTGS 60
Query: 57 HLNILAPVDCVWDRLVVAGIGDPRDAN-FSWLKAGGSIASYIEEDKNIEIFVDVPEYPIT 115
+ R++V G+GD +LKA G ++ + + E +
Sbjct: 61 TTLLHDLPGVAAPRVLVVGLGDAGKFGVAPYLKAIGDATRALKTGAVGTALLTLTELTVK 120
Query: 116 KAE----IRDLVLGFMLKTYTFDQYKTKKRESSSPRSKENISVTIVTEMIQQSSQVVADI 171
+ IR V Y + KK+ + + I+ ++ +A
Sbjct: 121 ARDAAWNIRQAVTVSDHAAYRYTATLGKKKVDETGLTTLAIAG--------DDARALAVG 172
Query: 172 QSVVKGVNLARDIINEPANVLGTDEFCKQVRKLESL--GVAVEILDKEAMHKLGMNALLA 229
+ +GV AR++ N P N G EILD+ M LGM +LL+
Sbjct: 173 VATAEGVEFARELGNLPPNYCTPAYLADTAAAFAGKFPGAEAEILDEAQMEALGMGSLLS 232
Query: 230 VAQGSSRPPYLAVMKWEGGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAA 289
VA+GS+ P L V+KW GG + +P +GKG+ FDTGG+++K G+EEMK D+ G A
Sbjct: 233 VARGSANRPRLIVLKWNGGG-DARPYVLVGKGITFDTGGVNLKTQGGIEEMKYDMCGGAT 291
Query: 290 VTGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLIL 349
V G + + IN + V+ VEN +A RP D++ SMSG+TIEV NTDAEGRLIL
Sbjct: 292 VIGTFVATVKAELPINLVVVVPAVENAIDGNAYRPSDVITSMSGKTIEVGNTDAEGRLIL 351
Query: 350 ADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLSTGELLW 409
DAL Y +NP ++D+ATLTGA +V+LG+ AGL + +D LA +LL++G + W
Sbjct: 352 CDALTYAE-RFNPEALVDVATLTGACMVALGHQTAGLMSKHDDLANELLAAGEHVFDRAW 410
Query: 410 RMPMNEEYNKLIESKFADMKNIGGRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPK 469
R+P+ +EY L++S FAD+ NIGGR G+I A FL +F ++ WAH+DIAGVA+ +
Sbjct: 411 RLPLWDEYQGLLDSTFADVYNIGGRWGGAITAGCFLSRFTENQRWAHLDIAGVASDEGKR 470
Query: 470 EINQSWASGFGVRLLDEFVR 489
A+G V LL +++
Sbjct: 471 ----GMATGRPVGLLTQWLL 486
>1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase
(alpha-aminoacylpeptide); 1.60A {Bos taurus} SCOP:
c.56.5.3 c.50.1.1 PDB: 1lan_A 1lcp_A* 1lap_A 1bpn_A
1bpm_A 1bll_E 2j9a_A* 2ewb_A*
Length = 484
Score = 369 bits (948), Expect = e-103
Identities = 148/467 (31%), Positives = 232/467 (49%), Gaps = 35/467 (7%)
Query: 41 VMRAVSVKNFIGESKSHLNILAPVDCVWDRLVVAGIGDPRDANF----------SWLKAG 90
+ +++ ++ + + +VV G+G + A
Sbjct: 35 LREILNISGPPLKAGKTR-TFYGLHEDFPSVVVVGLGKKTAGIDEQENWHEGKENIRAAV 93
Query: 91 GSIASYIEEDKNIEIFVDVPEYPITKAEIRDLVLGFMLKTYTFDQYKTKKRESSSPRSKE 150
+ I++ + + VD + G +L Y +D K K++
Sbjct: 94 AAGCRQIQDLEIPSVEVDPCGD------AQAAAEGAVLGLYEYDDLKQKRKV-------- 139
Query: 151 NISVTIVTEMIQQSSQVVADIQSVVKGVNLARDIINEPANVLGTDEFCKQVRKLE---SL 207
V + + G NLAR ++ PAN + +F + V + S+
Sbjct: 140 ---VVSAKLHGSEDQEAWQRGVLFASGQNLARRLMETPANEMTPTKFAEIVEENLKSASI 196
Query: 208 GVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSEE-QPLAFIGKGVVFDT 266
V I K + + M + L+VA+GS PP + ++G + PL F+GKG+ FD+
Sbjct: 197 KTDVFIRPKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKGSPNASEPPLVFVGKGITFDS 256
Query: 267 GGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGD 326
GGISIK + M+ M+ D+GGAA + + A+ IN +G+ L ENMP A +PGD
Sbjct: 257 GGISIKAAANMDLMRADMGGAATICSAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGD 316
Query: 327 IVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGL 386
+VR+ +G+TI+V NTDAEGRLILADAL Y +NP ++I+ ATLTGAM ++LG+ G+
Sbjct: 317 VVRARNGKTIQVDNTDAEGRLILADALCYAH-TFNPKVIINAATLTGAMDIALGSGATGV 375
Query: 387 FANNDVLAEQLLSSGLSTGELLWRMPMNEEYNK-LIESKFADMKNIGG-RGAGSIVAAQF 444
F N+ L +L + + TG+ +WRMP+ E Y + +I+ + AD+ NIG R AG+ AA F
Sbjct: 376 FTNSSWLWNKLFEASIETGDRVWRMPLFEHYTRQVIDCQLADVNNIGKYRSAGACTAAAF 435
Query: 445 LEKFVQDASWAHIDIAGVATGGYPKEINQSWASGFGVRLLDEFVRAF 491
L++FV WAH+DIAGV T + +G R L EF+ F
Sbjct: 436 LKEFVTHPKWAHLDIAGVMTNKDEVPYLRKGMAGRPTRTLIEFLFRF 482
>2hc9_A Leucine aminopeptidase 1; zinc, carbonate, structural genomics,
PSI, protein structure initiative; 1.85A {Caenorhabditis
elegans} PDB: 2hb6_A
Length = 491
Score = 337 bits (865), Expect = 3e-93
Identities = 120/492 (24%), Positives = 214/492 (43%), Gaps = 52/492 (10%)
Query: 18 LAILLKTSFSDVAGLSLIGSPSIVMRAVSVKNFIGESKSHLNILAPVDCVWDRLVVAGIG 77
++L +F + + V+ + ++ + +A +
Sbjct: 26 KSVLKNVTFEGKF-------KEVAQKFVTDGDSWNSM---ISRIPASGRHPLHYELAHLI 75
Query: 78 D----------PRDANFSWLKAGGSIASYIEEDKNIEIFVDVPEYPITKAEIRDLVLGFM 127
P +A+ + +Y E+ KN+ + AE D++
Sbjct: 76 TVPDASSRGNTPTNAHS--IYKELKPINYPEDTKNVHF--------VLFAEYPDVLSHVA 125
Query: 128 LKTYTFDQYKTKKRESSSPRSKENISVTIVTEMIQQSSQVVADIQSVVKGVNLARDIINE 187
TF ++ K +S + N+++ +V + + +++ + + + V +I+
Sbjct: 126 AIARTFCKFSMK----TSGIRELNVNIDVVCDKL--TNEDAVFLTDLSESVRETARLIDT 179
Query: 188 PANVLGTDEFCKQVRKL-ESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWE 246
PAN+L TD + K+ + G + ++ E + K G + V + PP V+ E
Sbjct: 180 PANILTTDALVDEAVKVGNATGSKITVIRGEELLKAGFGGIYHVGKAGPTPPAFVVLSHE 239
Query: 247 GGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINA 306
S E +A +GKGVV+DTGG+ IK GM MK D+GGAA + L +
Sbjct: 240 VPGSTE-HIALVGKGVVYDTGGLQIKTKTGMPNMKRDMGGAAGMLEAYSALVKHGFSQTL 298
Query: 307 IGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHYNPHLMI 366
L +VEN A +P DI++ +SG+T+E+ NTDAEGRLILAD ++Y + +
Sbjct: 299 HACLCIVENNVSPIANKPDDIIKMLSGKTVEINNTDAEGRLILADGVFYAKETLKATTIF 358
Query: 367 DLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLSTGELLWRMPMNEE-YNKLIESKF 425
D+ATLTGA G ++ N++ L +++ +G ++G+L+ M + + ++S
Sbjct: 359 DMATLTGAQAWLSGRLHGAAMTNDEQLENEIIKAGKASGDLVAPMLFAPDLFFGDLKSSI 418
Query: 426 ADMKNIG---GRGAGSIVAAQFLEKFV---QDASWAHIDIAGVATGGYPKEINQSWASGF 479
ADMKN G S VA + + + W H+DIA A G +G+
Sbjct: 419 ADMKNSNLGKMDGPPSAVAGLLIGAHIGFGEGLRWLHLDIAAPAEVGDR-------GTGY 471
Query: 480 GVRLLDEFVRAF 491
G L + +
Sbjct: 472 GPALFSTLLGKY 483
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 42.2 bits (99), Expect = 3e-04
Identities = 68/475 (14%), Positives = 141/475 (29%), Gaps = 203/475 (42%)
Query: 42 MRAVSVKNFIGESKSHLNI----LAP------VDCVWDRLVVAGIGDPRDANFS------ 85
M A S + + SH ++ L P + ++ + +P + +
Sbjct: 1 MDAYSTRPL---TLSHGSLEHVLLVPTASFFIASQLQEQFN-KILPEPTEGFAADDEPTT 56
Query: 86 ----WLKAGGSIASYIEEDKNIEIFVDVPEYPITKAEIRDLVLGFMLKTYTFDQYKTKKR 141
K G ++S +E K + D VL L F
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQ---------------FDQVLNLCLTE--F-------- 91
Query: 142 ESSSPRSKENISVTIVTEMIQQSSQVVADIQSVVKGVNLARDIINEP------------A 189
E+ +I + +++Q++ + + ++K AR + P
Sbjct: 92 ENCYLEG-NDIH-ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 190 N--------VLG----TDEFCKQVRKL----ESLGVAVE-ILDKEAMHKLGMNALLAVAQ 232
+ G TD++ +++R L L V ++ A ++ L+
Sbjct: 150 GEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL---VGDLIKFSAET---LSELIRTTL 203
Query: 233 GSSR--PPYLAVMKW-EGGDSEEQP-LAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAA 288
+ + L +++W E + P ++ +S
Sbjct: 204 DAEKVFTQGLNILEWLE--NPSNTPDKDYL----------LS-----------------I 234
Query: 289 AVTGLLHVLAERKAKINAIGVLALVE------NMPGSSAQRPGDIVRSMSGQTIEVINTD 342
++ L IGV+ L + G + PG++ + G T
Sbjct: 235 PISCPL------------IGVIQLAHYVVTAKLL-GFT---PGELRSYLKGAT------- 271
Query: 343 AEGR---LILADAL-----W---Y--------------CRTH--YNPHLMIDLATLTGAM 375
G L+ A A+ W + R + Y P+ + + L ++
Sbjct: 272 --GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY-PNTSLPPSILEDSL 328
Query: 376 VVSLGNIYAGLFANNDVLAEQLLS-SGLSTGELLWRMPMNEEY----NK-LIESK 424
NN+ + +LS S L+ ++ ++Y N L K
Sbjct: 329 ------------ENNEGVPSPMLSISNLTQEQV-------QDYVNKTNSHLPAGK 364
Score = 39.9 bits (93), Expect = 0.001
Identities = 67/389 (17%), Positives = 115/389 (29%), Gaps = 175/389 (44%)
Query: 22 LKTSFSDVAGLS--LIGSPSIVMRAVSVKNFIGESKSHLNILAPVDCVWDRLVVAGIG-- 77
L++ G S L+ + +I S ++F + + +L + IG
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAE-TDSWESFFVSVRKAITVL-----FF-------IGVR 309
Query: 78 ----DPRDANFSWLKAGGSIASYIEED--KNIEIFVDVPEYPITKAEIRDL----VLGFM 127
P S+ I ED +N E VP ++ I +L V ++
Sbjct: 310 CYEAYPN----------TSLPPSILEDSLENNE---GVPSPMLS---ISNLTQEQVQDYV 353
Query: 128 LKTYTFDQYKTKKRESSSPRSKENISVTIVTEMIQQSSQ--VVA-DIQSVVKGVNLA-RD 183
KT + + P K+ + +++V ++ VV+ QS+ G+NL R
Sbjct: 354 NKT---NSH--------LPAGKQ-VEISLV-----NGAKNLVVSGPPQSLY-GLNLTLRK 395
Query: 184 IINEPANVLGTDE----FCKQVRKLESLGVAVEILDKEAMHKLGMNALLAVAQGSSRP-- 237
G D+ F + RKL+ N L V + P
Sbjct: 396 AKAPS----GLDQSRIPFSE--RKLK-------------FS----NRFLPV----ASPFH 428
Query: 238 -PYLA-------------VMKWEGGDSEEQPLAFIGKGVVFDT--GGISIKPSHGMEEMK 281
L + + D + V+DT G + +
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKD-----IQI----PVYDTFDG-------SDLRVLS 472
Query: 282 GDLGGAAAVTGLLHVLAERKAKINAIGVL------ALVENMP-------GSSAQRPGDIV 328
G + + ++ I L G PG
Sbjct: 473 GSI---------SERI------VDCIIRLPVKWETTT--QFKATHILDFG-----PGGA- 509
Query: 329 RSMSGQTIEVI---NTDAEG-RLILADAL 353
SG + V+ N D G R+I+A L
Sbjct: 510 ---SG--LGVLTHRNKDGTGVRVIVAGTL 533
Score = 39.5 bits (92), Expect = 0.002
Identities = 60/425 (14%), Positives = 104/425 (24%), Gaps = 171/425 (40%)
Query: 152 ISVTIVTEMIQQSSQV----VADIQSVVKGVNLARDIINEPANV-------LG--TDEFC 198
+ + T +SQ+ + +G A D +EP LG +
Sbjct: 18 HVLLVPTASFFIASQLQEQFNKILPEPTEG--FAAD--DEPTTPAELVGKFLGYVSSLVE 73
Query: 199 --KQVRKLESLGVAV-----EILDKEAMHKLGMNALLAVAQGSSRPPYLAVMKWEGGDSE 251
K + + L + + L+ +H AL A + +
Sbjct: 74 PSKVGQFDQVLNLCLTEFENCYLEGNDIH-----ALAAKLLQENDTTLVKT--------- 119
Query: 252 EQPLAFIGKGVV---FDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAERKAKINAI- 307
K ++ ++ +P + L + E A++ AI
Sbjct: 120 --------KELIKNYITARIMAKRPFDKKSN-----------SALFRAVGEGNAQLVAIF 160
Query: 308 ---GV-------LALVENMPGSSAQRP--GDIVRSMSGQTIEVINTDAEGRLI-LADALW 354
G L + GD+++ + E ++ LI
Sbjct: 161 GGQGNTDDYFEELRDLYQT-----YHVLVGDLIKFSA----ETLS-----ELIRTTLDAE 206
Query: 355 YCRTHY--------NPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLS------- 399
T NP D L +S I G+ QL
Sbjct: 207 KVFTQGLNILEWLENPSNTPDKDYLLSI-PISCPLI--GVI--------QLAHYVVTAKL 255
Query: 400 SGLSTGELLWRMPMNEEYNKLIESKFADMKNIG--GRGAGSIVAAQFLEKFVQDA-SWAH 456
G + GEL S G G G + A + + SW
Sbjct: 256 LGFTPGELR--------------SYLK-----GATGHSQGLVTAV-----AIAETDSWES 291
Query: 457 -IDIAGVA------TG-----GYPKE------INQSWASGFG-------VR-L----LDE 486
A G YP + S + G + L + +
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 487 FVRAF 491
+V
Sbjct: 352 YVNKT 356
Score = 30.3 bits (68), Expect = 1.1
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 25/101 (24%)
Query: 15 QEGLAILLKTSFSDVAGLSLIGSPSIVMRAVSVKNFIGESKSHLNILAP----------V 64
Q L ++ K +F D+ LI + + F G S LA V
Sbjct: 1733 QPALTLMEKAAFEDLKSKGLIPADA---------TFAGHSLGEYAALASLADVMSIESLV 1783
Query: 65 DCVWDRLVVAGIGDPRD----ANFSW--LKAGGSIASYIEE 99
+ V+ R + + PRD +N+ + G AS+ +E
Sbjct: 1784 EVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE 1824
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.022
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 8/34 (23%)
Query: 215 DKEAMHKLGMNALLAV-AQGSSRPPYLAV---MK 244
+K+A+ KL A L + A S+ P LA+ M+
Sbjct: 18 EKQALKKL--QASLKLYADDSA--PALAIKATME 47
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 31.7 bits (71), Expect = 0.36
Identities = 43/198 (21%), Positives = 78/198 (39%), Gaps = 53/198 (26%)
Query: 231 AQGSSRPPYLAVMKWEGGDSE--EQPLAFIGKGVVFDT---GGI----------SIKPSH 275
A+GS+ L V+ + G + E + FI +DT GG+ + P
Sbjct: 528 AKGST----LIVVPFNQGSKQDVEALIEFI-----YDTEKNGGLGWDLDAIIPFAAIPEQ 578
Query: 276 GME----EMKGDLGGAAAVTGLLHVLAERKAKINAIGVLALVENMPGSSAQRPGDIVRSM 331
G+E + K + +T +L ++ K + +A G+ RP ++ M
Sbjct: 579 GIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGI-----------ETRPAQVILPM 627
Query: 332 SGQ--TIEVINTDAEGRLILADAL--WYCRTHYNPHLMIDLATLTGAMV-VSLGNIYAGL 386
S T +E +L L W+ + N T+ GA++ + G GL
Sbjct: 628 SPNHGTFGGDGMYSESKLSLETLFNRWHSESWANQ------LTVCGAIIGWTRGT---GL 678
Query: 387 FANNDVLAEQLLSSGLST 404
+ N+++AE + G+ T
Sbjct: 679 MSANNIIAEGIEKMGVRT 696
>1vr5_A Oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein; TM1223, structural genomics; HET: EPE; 1.73A
{Thermotoga maritima MSB8} SCOP: c.94.1.1
Length = 547
Score = 28.9 bits (63), Expect = 2.6
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 13/56 (23%)
Query: 347 LILADALWYCRTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDV-------LAE 395
L ALW +++NP T A+ ++G +Y LF + + LAE
Sbjct: 18 LYWGGALWSPPSNWNPF------TPWNAVAGTIGLVYEPLFLYDPLNDKFEPWLAE 67
>3irc_A Envelope protein; viral protein, structural genomics, center for
structural genomics of infectious diseases, csgid, ATP-
binding, helicase; 2.25A {Dengue virus 1} PDB: 3egp_A
Length = 108
Score = 28.2 bits (63), Expect = 4.6
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 12/98 (12%)
Query: 4 KFSFAKNPSIKQEGLAIL-LKTSFSD------VAGLSLIGSPSIVMRAVSVKNFIGESKS 56
F K + Q G ++ +K +D + + R ++ + + +
Sbjct: 14 SFKLEKEVAETQHGTVLVQVKYEGTDAPCKIPFSTQDE-KGATQNGRLITANPIVTDKEK 72
Query: 57 HLNI-LAPVDCVWDRLVVAGIGDPRDANFSWLKAGGSI 93
+NI P + +V G G+ SW K G SI
Sbjct: 73 PVNIEAEPP--FGESYIVVGAGEK-ALKLSWFKKGSSI 107
>1p58_A Major envelope protein E; flavivirus, flaviviridae, glycoprotein E
from TICK-borne encephalitis virus, membrane protein M,
cryo-EM; 9.50A {Dengue virus 2 puerto rico} SCOP:
i.17.1.1
Length = 495
Score = 27.7 bits (62), Expect = 5.6
Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 12/104 (11%)
Query: 4 KFSFAKNPSIKQEGLAIL-LKTSFSD------VAGLSLIGSPSIVMRAVSVKNFIGESKS 56
KF K + Q G ++ ++ + L ++ R ++V + E S
Sbjct: 305 KFKVVKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDL-EKRHVLGRLITVNPIVTEKDS 363
Query: 57 HLNILAPVDCVW-DRLVVAGIGDPRDANFSWLKAGGSIASYIEE 99
+NI + + D ++ G+ W K G SI E
Sbjct: 364 PVNI--EAEPPFGDSYIIIGVEPG-QLKLDWFKKGSSIGQMFET 404
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.317 0.134 0.385
Gapped
Lambda K H
0.267 0.0562 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 4,179,481
Number of extensions: 197715
Number of successful extensions: 618
Number of sequences better than 10.0: 1
Number of HSP's gapped: 573
Number of HSP's successfully gapped: 26
Length of query: 494
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 398
Effective length of database: 3,365,806
Effective search space: 1339590788
Effective search space used: 1339590788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.9 bits)