BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780392|ref|YP_003064805.1| leucyl aminopeptidase [Candidatus Liberibacter asiaticus str. psy62] (494 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780392|ref|YP_003064805.1| leucyl aminopeptidase [Candidatus Liberibacter asiaticus str. psy62] Length = 494 Score = 1009 bits (2609), Expect = 0.0, Method: Compositional matrix adjust. Identities = 494/494 (100%), Positives = 494/494 (100%) Query: 1 MDIKFSFAKNPSIKQEGLAILLKTSFSDVAGLSLIGSPSIVMRAVSVKNFIGESKSHLNI 60 MDIKFSFAKNPSIKQEGLAILLKTSFSDVAGLSLIGSPSIVMRAVSVKNFIGESKSHLNI Sbjct: 1 MDIKFSFAKNPSIKQEGLAILLKTSFSDVAGLSLIGSPSIVMRAVSVKNFIGESKSHLNI 60 Query: 61 LAPVDCVWDRLVVAGIGDPRDANFSWLKAGGSIASYIEEDKNIEIFVDVPEYPITKAEIR 120 LAPVDCVWDRLVVAGIGDPRDANFSWLKAGGSIASYIEEDKNIEIFVDVPEYPITKAEIR Sbjct: 61 LAPVDCVWDRLVVAGIGDPRDANFSWLKAGGSIASYIEEDKNIEIFVDVPEYPITKAEIR 120 Query: 121 DLVLGFMLKTYTFDQYKTKKRESSSPRSKENISVTIVTEMIQQSSQVVADIQSVVKGVNL 180 DLVLGFMLKTYTFDQYKTKKRESSSPRSKENISVTIVTEMIQQSSQVVADIQSVVKGVNL Sbjct: 121 DLVLGFMLKTYTFDQYKTKKRESSSPRSKENISVTIVTEMIQQSSQVVADIQSVVKGVNL 180 Query: 181 ARDIINEPANVLGTDEFCKQVRKLESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYL 240 ARDIINEPANVLGTDEFCKQVRKLESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYL Sbjct: 181 ARDIINEPANVLGTDEFCKQVRKLESLGVAVEILDKEAMHKLGMNALLAVAQGSSRPPYL 240 Query: 241 AVMKWEGGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAER 300 AVMKWEGGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAER Sbjct: 241 AVMKWEGGDSEEQPLAFIGKGVVFDTGGISIKPSHGMEEMKGDLGGAAAVTGLLHVLAER 300 Query: 301 KAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHY 360 KAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHY Sbjct: 301 KAKINAIGVLALVENMPGSSAQRPGDIVRSMSGQTIEVINTDAEGRLILADALWYCRTHY 360 Query: 361 NPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLSTGELLWRMPMNEEYNKL 420 NPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLSTGELLWRMPMNEEYNKL Sbjct: 361 NPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLSTGELLWRMPMNEEYNKL 420 Query: 421 IESKFADMKNIGGRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPKEINQSWASGFG 480 IESKFADMKNIGGRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPKEINQSWASGFG Sbjct: 421 IESKFADMKNIGGRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPKEINQSWASGFG 480 Query: 481 VRLLDEFVRAFYEK 494 VRLLDEFVRAFYEK Sbjct: 481 VRLLDEFVRAFYEK 494 >gi|255764497|ref|YP_003065010.2| ABC transporter permease [Candidatus Liberibacter asiaticus str. psy62] Length = 587 Score = 30.0 bits (66), Expect = 0.096, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 46/116 (39%), Gaps = 19/116 (16%) Query: 359 HYNPHLMIDLATLTGAMVVSLGNIYAGLFA-NNDVLAEQLLSSGLSTGELLWR---MPMN 414 H NP+L + L + G L N+ AG A ND +++ SS TG WR +P Sbjct: 445 HLNPNLWLSLLMIFGTQWYILFNVIAGASAFPNDF--KEVASSFHITGWRWWRYIILPGI 502 Query: 415 EEYNKLIESKFADMKNIGGRGAGSIVAAQFLEKFVQDASWAHIDIAGVATGGYPKE 470 Y + GG SIV+ + ASW HI + G Y E Sbjct: 503 FPYYVT-----GAITACGGAWNASIVS--------EVASWGHIHLRTTGLGAYIAE 545 >gi|254780710|ref|YP_003065123.1| diaminopimelate epimerase [Candidatus Liberibacter asiaticus str. psy62] Length = 296 Score = 27.3 bits (59), Expect = 0.63, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 7/60 (11%) Query: 357 RTHYNPHLMIDLATLTGAMVVSLGNIYAGLFANNDVLAEQLLSSGLSTGELLWRMPMNEE 416 R H P ++ L VVS+GN +A F +D+ L S G LL + PM E Sbjct: 143 RFHIGP---VNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL----ASFGNLLAKHPMFSE 195 >gi|254780547|ref|YP_003064960.1| OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62] Length = 160 Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust. Identities = 10/24 (41%), Positives = 15/24 (62%) Query: 251 EEQPLAFIGKGVVFDTGGISIKPS 274 +EQ + +G V FDT SI+P+ Sbjct: 41 QEQFSSSVGDSVFFDTSSYSIRPA 64 >gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62] Length = 896 Score = 24.3 bits (51), Expect = 5.3, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 6/61 (9%) Query: 26 FSDVAGLSLIGSPSIV----MRAVSVKNFIGESKSHLNILAPVDCVWDRLVVAGIGDPRD 81 FS V G P++V MR V +G ++N L PVD V D ++ +D Sbjct: 86 FSRVLMQDFTGVPAVVDLAAMRDAIV--VLGGDPQNINPLVPVDLVIDHSLIVDYSGNKD 143 Query: 82 A 82 A Sbjct: 144 A 144 >gi|254780506|ref|YP_003064919.1| methylenetetrahydrofolate dehydrogenase/cyclohydrolase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 306 Score = 24.3 bits (51), Expect = 5.5, Method: Compositional matrix adjust. Identities = 9/28 (32%), Positives = 13/28 (46%) Query: 63 PVDCVWDRLVVAGIGDPRDANFSWLKAG 90 P C ++V +G PR W+K G Sbjct: 199 PEICRTADILVVAVGRPRMVQVDWIKTG 226 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.317 0.134 0.385 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 306,399 Number of Sequences: 1233 Number of extensions: 12685 Number of successful extensions: 43 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 10 length of query: 494 length of database: 328,796 effective HSP length: 78 effective length of query: 416 effective length of database: 232,622 effective search space: 96770752 effective search space used: 96770752 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 40 (20.0 bits)