Query         gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 762
No_of_seqs    218 out of 1458
Neff          8.8 
Searched_HMMs 39220
Date          Sun May 29 16:05:27 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780395.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK04423 organic solvent toler 100.0       0       0  977.0  72.0  733    1-760     1-762 (798)
  2 PRK03761 organic solvent toler 100.0       0       0  964.0  79.2  717    1-757     1-763 (782)
  3 COG1452 Imp Organic solvent to 100.0       0       0  848.1  54.7  676   48-756    48-764 (784)
  4 pfam04453 OstA_C Organic solve 100.0       0       0  394.0  43.8  371  301-697     1-382 (382)
  5 COG1452 Imp Organic solvent to  99.3 1.2E-07 3.2E-12   68.0  40.9  179   52-246    82-270 (784)
  6 PRK04423 organic solvent toler  99.3 2.1E-07 5.3E-12   66.5  55.5  196   51-264    86-289 (798)
  7 pfam03968 OstA OstA-like prote  99.2 3.4E-09 8.6E-14   78.5  17.6   60   47-106    23-87  (141)
  8 PRK10894 hypothetical protein;  99.2 1.3E-09 3.2E-14   81.4  15.3   83   46-128    30-122 (184)
  9 COG1934 Uncharacterized protei  99.1 3.2E-08 8.3E-13   71.9  16.8   83   48-131    29-121 (173)
 10 PRK03761 organic solvent toler  99.0   2E-06   5E-11   60.0  63.4  115   50-165    78-204 (782)
 11 TIGR03002 outer_YhbN cell enve  99.0 1.2E-07 3.2E-12   68.0  16.2  102   46-149     4-119 (150)
 12 COG1934 Uncharacterized protei  98.5 7.8E-06   2E-10   56.0  13.6   83   47-130    57-149 (173)
 13 pfam06835 DUF1239 Protein of u  98.3   3E-05 7.6E-10   52.1  13.0  108   50-158    51-168 (176)
 14 pfam03968 OstA OstA-like prote  98.3 2.5E-05 6.3E-10   52.7  12.3   76   49-125    54-140 (141)
 15 PRK10894 hypothetical protein;  98.1 4.3E-05 1.1E-09   51.0   9.5   81   48-129    61-152 (184)
 16 TIGR03002 outer_YhbN cell enve  98.0   3E-05 7.7E-10   52.1   7.5  109   79-198     8-131 (150)
 17 pfam06835 DUF1239 Protein of u  97.6  0.0053 1.4E-07   37.1  19.6   80   49-129    83-167 (176)
 18 COG5375 Uncharacterized protei  97.3  0.0053 1.4E-07   37.1  10.9  120   46-167    86-213 (216)
 19 PRK10893 hypothetical protein;  96.8   0.037 9.5E-07   31.4  14.2  115   52-168    60-185 (190)
 20 cd07306 Porin3_VDAC Voltage-de  96.7   0.041   1E-06   31.1  18.5  104  620-734   130-244 (276)
 21 pfam01459 Porin_3 Eukaryotic p  96.6   0.051 1.3E-06   30.5  17.5  117  620-749   132-259 (272)
 22 PRK10716 long-chain fatty acid  92.1    0.68 1.7E-05   23.0  18.3   51  681-731   381-433 (437)
 23 PRK09980 ompL outer membrane p  90.9    0.89 2.3E-05   22.2  12.0   99  623-721   108-229 (230)
 24 KOG3126 consensus               86.0     1.9 4.8E-05   20.0  13.5   47  621-667   136-182 (281)
 25 TIGR03509 OMP_MtrB_PioB decahe  84.8     2.1 5.4E-05   19.7  18.6   26  681-706   581-606 (649)
 26 TIGR03014 EpsL exopolysacchari  83.5     2.4 6.2E-05   19.3  15.8  147  565-731   214-379 (381)
 27 pfam05096 Glu_cyclase_2 Glutam  81.3     2.9 7.4E-05   18.8   8.0   44   89-133    72-118 (264)
 28 pfam06178 KdgM Oligogalacturon  81.1       3 7.5E-05   18.7  21.7   75  647-721   133-217 (218)
 29 COG3117 Uncharacterized protei  75.8     4.2 0.00011   17.7  11.7   82   52-134    60-150 (188)
 30 TIGR01778 TonB-copper TonB-dep  74.5     2.7 6.8E-05   19.0   2.6   52  141-196    34-92  (668)
 31 pfam02462 Opacity Opacity fami  73.0     4.9 0.00013   17.2   9.2   38  684-721    81-125 (126)
 32 pfam12600 DUF3769 Protein of u  70.6     5.5 0.00014   16.9  24.4  164  140-328     8-177 (403)
 33 pfam00267 Porin_1 Gram-negativ  69.0       6 0.00015   16.7  11.0   81  650-731   247-332 (334)
 34 PRK10554 outer membrane porin   67.4     6.4 0.00016   16.5  14.1   85  647-732   278-372 (373)
 35 PRK10159 outer membrane phosph  66.1     6.8 0.00017   16.3   9.9   80  649-731   266-349 (351)
 36 PRK09840 catecholate sideropho  63.4     7.6 0.00019   16.0  16.0   18  459-476   459-476 (760)
 37 PRK10808 outer membrane protei  61.6     8.2 0.00021   15.7  15.9   17  311-327   153-169 (347)
 38 pfam12094 DUF3570 Protein of u  59.7     8.8 0.00022   15.5  19.2   28  561-588   345-372 (407)
 39 pfam04338 DUF481 Protein of un  55.1      10 0.00027   15.0  20.6   41  552-595    75-115 (210)
 40 PRK10523 lipoprotein involved   54.7      11 0.00027   15.0   7.2  106   49-169    58-169 (234)
 41 pfam05326 SVA Seminal vesicle   52.8      11 0.00028   14.9   2.3   27  158-186    80-106 (124)
 42 pfam11751 DUF3308 Protein of u  49.9      13 0.00032   14.5  12.5   73  624-707   184-257 (274)
 43 PRK04922 tolB translocation pr  48.2      11 0.00027   15.0   1.7   25    1-25      1-25  (439)
 44 PRK11433 putative xanthine deh  45.8      15 0.00037   14.1   3.0   19    1-19     10-28  (217)
 45 PRK10002 outer membrane protei  45.8      15 0.00037   14.1  14.6   82  647-731   275-360 (362)
 46 COG4313 Protein involved in me  44.7      15 0.00039   14.0   9.2   65  685-749   219-302 (304)
 47 cd07303 Porin3 Eukaryotic pori  44.3      15 0.00039   13.9  16.6   84  629-722   139-222 (274)
 48 PRK13524 outer membrane recept  43.4      16  0.0004   13.8  16.7   15  460-474   446-460 (742)
 49 pfam11854 DUF3374 Protein of u  43.2      16 0.00041   13.8  25.0   25  682-706   609-633 (675)
 50 pfam11231 DUF3034 Protein of u  42.3      16 0.00042   13.7   8.3   24  683-706   182-205 (257)
 51 PRK10049 pgaA outer membrane p  42.3      16 0.00042   13.7  12.3   16  564-579   654-669 (818)
 52 PRK10695 hypothetical protein;  42.2      16 0.00042   13.7   5.8   41   53-93     56-97  (876)
 53 pfam09694 Gcw_chp Bacterial pr  41.3      17 0.00043   13.6  12.1   52  682-733   137-196 (226)
 54 pfam11924 DUF3442 Protein of u  38.8      19 0.00047   13.4  16.1   21  621-641   211-231 (280)
 55 COG5338 Uncharacterized protei  38.2      19 0.00048   13.3   5.2   28  557-588   299-326 (468)
 56 PRK11447 cellulose synthase su  36.9      20 0.00051   13.2   7.6   41  685-725  1099-1141(1158)
 57 PRK09501 potD spermidine/putre  36.6      19 0.00048   13.3   1.4   19    1-19      1-19  (348)
 58 pfam04245 NA37 37-kD nucleoid-  35.6      14 0.00036   14.2   0.7   10  266-275   103-112 (334)
 59 COG3056 Uncharacterized lipopr  35.2      21 0.00054   13.0   2.9   27    6-32     12-39  (204)
 60 PRK00378 nucleoid-associated p  34.0      16  0.0004   13.8   0.7   13  264-276    98-110 (334)
 61 pfam11276 DUF3078 Protein of u  33.9      22 0.00056   12.9   5.5   28  679-706    58-85  (92)
 62 PRK11667 hypothetical protein;  33.8      22 0.00056   12.9   2.0   23    1-23      1-23  (162)
 63 smart00869 Autotransporter Aut  30.2      25 0.00065   12.5  11.1   84  442-528   117-201 (261)
 64 TIGR03016 pepcterm_hypo_1 unch  29.8      26 0.00066   12.4  19.4   66  684-749   347-429 (431)
 65 TIGR03519 Bac_Flav_fam_1 Bacte  29.4      26 0.00067   12.4  13.8   73  624-707   200-273 (292)
 66 PRK13874 conjugal transfer pro  28.5      27 0.00069   12.3   2.3   28   12-39      8-35  (233)
 67 COG3637 Opacity protein and re  25.9      30 0.00077   12.0   5.2   23  684-706   148-170 (199)
 68 COG2067 FadL Long-chain fatty   24.4      32 0.00082   11.8  16.0   24  684-707   382-405 (440)
 69 pfam01389 OmpA_membrane OmpA-l  21.9      36 0.00091   11.5  12.1   51  684-734    78-148 (175)
 70 pfam04234 CopC Copper resistan  21.2      37 0.00094   11.4   5.7   35    6-42      2-36  (120)
 71 PRK00022 lolB outer membrane l  21.0      37 0.00095   11.4   4.6   20   68-87     49-68  (203)
 72 pfam04420 CHD5 CHD5-like prote  20.8      37 0.00093   11.4   0.6   21  200-220   114-134 (159)
 73 PRK10301 hypothetical protein;  20.8      38 0.00096   11.3   6.5   39    1-42      1-39  (124)
 74 COG3823 Glutamine cyclotransfe  20.7      38 0.00096   11.3   7.0   45   89-133    72-119 (262)

No 1  
>PRK04423 organic solvent tolerance protein; Provisional
Probab=100.00  E-value=0  Score=977.02  Aligned_cols=733  Identities=17%  Similarity=0.203  Sum_probs=590.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCC---------CCCCCCCCCCEEEEEEEEEEEECCCCEEEE
Q ss_conf             95331024767899999999876324510025556-78654---------566677666607999207999766897999
Q gi|254780395|r    1 MRYNYRHLIGATTFFLAFNIITPQGTPPSNEQTTT-STPSK---------IKKNETNRHSELDISSDEIVLNSEGSTTTA   70 (762)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---------~~~~~~~~~~~~~~~ad~~~~~~~~~~~~a   70 (762)
                      ||+.-|.|  +++|++|..+-+.++.+|..-..++ ..|++         ++..+.....|+.++||+|+...+  +-+.
T Consensus         1 ~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~aD~~~~~~~--~~~f   76 (798)
T PRK04423          1 MRRALRLL--PLPLSIAICLPAMADEKPLNWGLCPATDPLPGFDGAPAADPKAAEMRQQLPTDIEGDQLSGTST--TPQY   76 (798)
T ss_pred             CCCHHHHH--HHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC--CCEE
T ss_conf             96202013--2354241004401210467756687677887656787655543444556985887640235577--5179


Q ss_pred             EEEEEEEECCEEEEEEEEEEECCCCEEEEECCEEEECCCCCEEEEEEEEEECCCCEEEEEEEEEEEECCCEEEEEEEEEE
Q ss_conf             98799998996999518999863787999734899838987899706999430255999847999706750210246872
Q gi|254780395|r   71 VGNVKIEYKGYHLSARDITFNHKNHRIIASGNIKLIEPDKRQIHAEYLDITDDFTNGIIKNLTIKIPADETYLTASSAQI  150 (762)
Q Consensus        71 ~G~v~i~~~~~~l~Ad~i~y~~~~~~~~a~G~v~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  150 (762)
                      +|||+|.+++.+|+||+|+|||+++.|.|+|||++.++ |..+.|+++++++++++|.+.++++.+.+.+.++.|+.+++
T Consensus        77 ~GnV~i~qg~~~l~AD~v~ydq~~~~v~A~GnV~~~~~-~~~~~g~~~~~~l~~~~g~~~~~~y~l~~~~~~G~A~~~~~  155 (798)
T PRK04423         77 QGNVALKRGDQFLGADNLRMDTETGNYIAEGNVRYQDT-SIRMVADRAEGNQDTDTHKITNIQYQLVERRGNGDAESVDL  155 (798)
T ss_pred             EEEEEEEECCEEEEEEEEEEECCCCEEEEECCEEEECC-CCEEECCEEEEECCCCEEEEECCEEEEEECCCCEEEEEEEE
T ss_conf             85599997998999117999867898999777899679-85898142899826764799667899994677236677674


Q ss_pred             CCCEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEECCEEEECCEEEEECCCEECCCCCCCCCCCCCCE
Q ss_conf             39759999879973137665778885089996699996777779994428998270686325400124555454541000
Q gi|254780395|r  151 IGQRTIFDKGTYTACSSCSKPNSRPPFWIVKSKRAILNRKTHTIRLEKPYLEIFGNSIFYFPLIEIPDETVVRKTGFLTP  230 (762)
Q Consensus       151 ~~~~~~~~~~~~T~C~~~~~~~~~~P~W~i~a~~i~~d~~~~~~~~~~a~l~i~~vPv~y~Py~~~P~~~~~R~sGfL~P  230 (762)
                      .++..++++|+||||+|++      |+|+|+|++|++|.++++++++||+|+|+||||||+|||.||+ +.+||||||+|
T Consensus       156 ~g~~~~l~~~~~ttC~~~~------~~W~~~a~~i~~d~~~~~~~~~~a~~~~~~vPv~y~Py~~fp~-~~~R~sG~L~P  228 (798)
T PRK04423        156 QGQVGQMHRSTYTTCDPSQ------PIWRLRAPEIDVDNDEGFGTARNAVLQIGKVPVLYFPWFKFPI-DDRRQTGLLFP  228 (798)
T ss_pred             CCCEEEEECCEECCCCCCC------CCEEEEECEEEEECCCCEEEEEEEEEEECCEEEEECCCEECCC-CCCCCCEEECC
T ss_conf             4864799571983289889------8359994579980778889999459999989179347684526-99843243646


Q ss_pred             EEECCCCCCCCEECEEEEECCCCCCEEEEEEECCCCEEEEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCEEEEEEECC
Q ss_conf             56413333430001034302465201455420243101100134553025607999987505556765432011232021
Q gi|254780395|r  231 LFSSGEKQRFGVGIPYYLVISDNSDATFTFSPHPKKGILGEMELRKYFHSGKHTLHAAYMYNNNVESGEERHQAMLASIA  310 (762)
Q Consensus       231 ~~~~s~~~G~~~~~Pyy~~i~~~~D~Tltp~~~s~rG~~l~~eyRy~~~~g~~~~~~~~~~~d~~~~~~~~~r~~~~~~~  310 (762)
                      ++|+|+++|+++.+|||||||||+|+||+|++|++||+++++||||+.+.+.+++.++|+++|+... ++  ||.+..+|
T Consensus       229 ~~~~s~~~G~~~~~PyY~niapn~D~T~tpr~ms~RG~~l~~EfRYL~~~~~G~~~~~yLp~D~~~~-~~--r~~~~~~~  305 (798)
T PRK04423        229 QLGLSGRNGFDYAQPIYLNLAPNYDATLLPRYMSKRGFMFDTEFRYLYDGGRGEVTGNFLPNDKLRD-KD--RGRVFFSG  305 (798)
T ss_pred             CCCCCCCCCEEEEEEEEEECCCCCCCEEEHHHHHHCCCCCCCEEEECCCCCCCEEEEEECCCCCCCC-CC--CCCEEEEE
T ss_conf             6641489976999999885277644187011442126310325897267887418644447753454-44--54044522


Q ss_pred             EECCEEEEEEEEEEEEEECCHHHHCCCCCCC---CCCEEEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCCCCCEEEEC
Q ss_conf             0000003566789999514101100123443---2110011222203355303577777776413566665544201212
Q gi|254780395|r  311 EFEINPIWNLGWHLKKQTSGQLSYNYYSDAL---SKRININQIYLTGTGEKNSFDMRALHYHIQEPLSKNEKKFPQANIY  387 (762)
Q Consensus       311 ~~~l~~~~~~~~~~~~~SD~~y~~dy~~d~~---~~~~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  387 (762)
                      .+.++++|+..++++.|||++|++|+..+..   ....+...+.+.+.++.+.+.+++..||+++.... +.. .....+
T Consensus       306 ~~~~~~~w~~~~d~~~VSD~~Yf~Df~s~~~~~~s~~~L~q~~~~~~~~~nw~~~l~~q~yQ~l~~~l~-~~~-~PY~rl  383 (798)
T PRK04423        306 YHNVNSHWQARASLAWVSDTRYVEDFTSRLVGMGSASSLQSTVGIYGTGETWTAGLMADRWQLTDYTLD-ERA-LPYNRQ  383 (798)
T ss_pred             EEECCCCCEEEEEEEECCCCCHHHHCCCCCCCCCCHHHHHHHHEEEECCCCEEEEEEEEEEEECCCCCC-CCC-CCHHHC
T ss_conf             543189807998888704617565424565663547888633303222687246688887880367766-678-876658


Q ss_pred             CCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCC--C-----CCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCEEE
Q ss_conf             3311100146666651689756788777502454433--2-----23454445556521466777567764321671799
Q gi|254780395|r  388 PLIDYRYVDLQYAKSQQISITGNITAISRAKEKNTIN--Q-----MKHDSQPWIPNGINRRLSIEADWRKKIIGPLGILF  460 (762)
Q Consensus       388 P~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~-----~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~G~~~  460 (762)
                      |++.+++.... ..+..+++..+++.+.+....-...  .     .............++|++++|++++|+..++| .+
T Consensus       384 PQl~~ny~~~~-~~~~d~~l~~e~t~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~R~~~~P~is~P~~~~~g-~l  461 (798)
T PRK04423        384 PRLYFNWDKPV-FGILEAGVYAEAVRFTHDDSYLVQPPNDGNNDNYVRTGIRNQEYGGGSRLDVKPYVSMPLSGAAW-YV  461 (798)
T ss_pred             CEEEEEEECCC-CCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEECCCE-EE
T ss_conf             65788612377-88501787888898660654434444455543222345443355641589987788773225742-68


Q ss_pred             EEEEEEEEEEEEEECCCCCCC--CCCCCCCCEEEEEEEEEEEEEEECCEECCCCCEEEEEEEEEEEEECCCCCCCCCCCC
Q ss_conf             988899877887512566666--654456520236898989999831021367632589877789994376666535655
Q gi|254780395|r  461 TPIANIRGDLHYLSFNRDLSS--DTISNNPNFVASKMLTAGLDIRYPIVAVTQKSRHILEGIAQVYAATDEKYIKTIPNE  538 (762)
Q Consensus       461 tp~~~lr~~~Y~~~~~~~~~~--~~~~~~~~~~~r~~~~~~l~~~~p~~~~~~~~~h~LeP~~q~~~~~~~~~~~~iPn~  538 (762)
                      +|.++++.+.|.++.......  ......++.++.+..++|+.|++++...+.+++||||||++ |.+.|+++|+.||+|
T Consensus       462 tP~~~l~~t~Y~ld~~~~~~~~~~~~~s~sRtlP~fslDsGl~FER~~~l~g~~~~QTLEPRlf-YlYvPYrDQs~iP~F  540 (798)
T PRK04423        462 TPTLAWRYTAYQLDSGLAETAPLTGNRSPSRSLPIASLDAGLYFDRETSLFGTNYLNTLEPRMY-YLYVPYRNQDDLPVF  540 (798)
T ss_pred             CHHHEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCCCEEEEEEEEE-EEECCCCCCCCCCCC
T ss_conf             7666014368870467555555466677434402689805269998533567753488701699-995573455668865


Q ss_pred             CCCCCCCCCHHHCCCCCCCCCCEECCCEEEEEEEEEEEECC--CCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             44432247021002122357400046347887888888428--8606632300378841333334543336667788876
Q gi|254780395|r  539 DSHSLVLNSTSLFTQNRFSGFDRIEGGNRTNLGIRYIGSFN--NLFTINGVIGRSIHILGTNSFSIPDSIGIGQNSGLED  616 (762)
Q Consensus       539 Ds~~~~fd~~nLF~~nrfsG~DRie~~~r~~~Gl~~~~~~~--~~~~~~~~iGQ~~~~~~~~~~~~~~~~~~~~~sgl~~  616 (762)
                      ||..++|++.+||+.|||+|.|||.|+||+++||+.+....  +.|.++++|||+|||.++++-..+.      ....+.
T Consensus       541 DT~~l~fsy~qLFrdnRFSG~DRI~DANQlTlGlTSR~~D~~tG~Er~r~SiGQi~YF~DrrV~L~~~------~~~~~~  614 (798)
T PRK04423        541 DTRPFTFSWGQLFRDSRYTGADRQNDANQLTLAVTSRWLDQDTGKEKLSLSAGQILYFSDSLVTINNS------EQTIEQ  614 (798)
T ss_pred             CCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCCCC------CCCCCC
T ss_conf             57766789899456884556444452114202247788717898078888635899943760015898------866657


Q ss_pred             CCCCEEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEEEECCCCE-EEEEEEEECCCCCCCCCCEEEEEEEEEEECCC
Q ss_conf             64437999988436777999999861676606688999999647408-99999872267544666325899899997256
Q gi|254780395|r  617 KFSDYAAAVRLSLSPKITFSTQTLINPKDWSTRRTDTTIDYTMGSYE-ANISYTHIPAYPLYAYDARKTIQSRIKFKIND  695 (762)
Q Consensus       617 ~~SD~v~~~~~~~~~~~~l~~~~~~d~~~~~~~r~~~~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~  695 (762)
                      ..||+++++.+++.+.|.+.+..+||++..++.+.++.+.|+++..+ ++++|+|..... ...+..+|+.+++.|||++
T Consensus       615 ~~S~~~~e~~~~l~~~w~l~~~~QYd~~~~~~~~~~~~l~Y~p~~~~~lnl~YRy~r~~~-~~~~~i~Q~d~s~~wPi~~  693 (798)
T PRK04423        615 GKSAWVADANYMINDRWTLGATYQWNPNSRREDLASLRARYLLNNDGIINLAYRYRRNLI-DNSDQLKQADFSFLYPINP  693 (798)
T ss_pred             CCCCEEEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCCEEEEEEEEEECCC-CCCCCEEEEEEEEEEEECC
T ss_conf             877003788898558889974799899988100267899997699968988857860577-7888516877999999438


Q ss_pred             CEEEEEEEEECCCCCCC-EEEEEEEEECCEEEEEEEEEEC---CCCCCCCEEEEEEEEECCCCCCCCCC
Q ss_conf             56999999951654541-2256569964669999999971---47788735999999702445587667
Q gi|254780395|r  696 VLSADASLKWNMRAELP-SHSIGLAYQNDCATVKIIYKNE---SPNIHGYKIQARLSLRTIGDFNPIDI  760 (762)
Q Consensus       696 ~w~~~~~~~ydl~~~~~-~~~~Gl~Y~~~Cw~~~l~y~r~---~~~~~~~~i~~~~~Lk~LG~~~~~~~  760 (762)
                      +|++.|+++||+++++. +..+||+|++|||+++++++|.   .+...+++|+|+|+|||||++.+.+.
T Consensus       694 ~W~~vGr~~Ydl~~~r~~E~l~GleY~sCCWa~R~v~~R~~~~~~~~~~~~i~~q~eL~GL~~~G~~~~  762 (798)
T PRK04423        694 RWSAVGRYYYSLLDKKPLEIIGGVQWDSCCLAVRGVVRRFVRNRDGEMDNSIQLEFVLKGLSSFGQDTD  762 (798)
T ss_pred             CEEEEEEEEECCCCCCCHHHCCCEEECCCCEEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCCCCCHH
T ss_conf             889999999718788112531070453887168979999981688762305999999736435699879


No 2  
>PRK03761 organic solvent tolerance protein; Provisional
Probab=100.00  E-value=0  Score=963.99  Aligned_cols=717  Identities=15%  Similarity=0.182  Sum_probs=582.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCC--CCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEE
Q ss_conf             953310247678999999998763245-1002555678654--5666776666079992079997668979999879999
Q gi|254780395|r    1 MRYNYRHLIGATTFFLAFNIITPQGTP-PSNEQTTTSTPSK--IKKNETNRHSELDISSDEIVLNSEGSTTTAVGNVKIE   77 (762)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ad~~~~~~~~~~~~a~G~v~i~   77 (762)
                      ||+..+-||..+++++....   .+.+ .+..|+...-|.-  +.....|.+.||.|+||+++++. .+.++++|||+|.
T Consensus         1 m~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~i~AD~~~~~~-~~~~~~~GnV~i~   76 (782)
T PRK03761          1 MKKRSPTLLATMIATALYSQ---QGLAADLASQCMLGVPSYDRPLVTGDPNDLPVTINADNAEANY-PDKAVYTGNVDIK   76 (782)
T ss_pred             CCCCHHHHHHHHHHHHHHCH---HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCEEECC-CCEEEEEEEEEEE
T ss_conf             98405789999999988470---7678988866640587667674269988884799933246258-9779999339999


Q ss_pred             ECCEEEEEEEEEEECCCC------EEEEECCEEEECCCCCEEEEEEEEEECCCCEEEEEEEEEEEECCCEEEEEEEEEEC
Q ss_conf             899699951899986378------79997348998389878997069994302559998479997067502102468723
Q gi|254780395|r   78 YKGYHLSARDITFNHKNH------RIIASGNIKLIEPDKRQIHAEYLDITDDFTNGIIKNLTIKIPADETYLTASSAQII  151 (762)
Q Consensus        78 ~~~~~l~Ad~i~y~~~~~------~~~a~G~v~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  151 (762)
                      +++.+|.||+|+|||+++      +|.|+|||.+.++ +..+.|+++.++++.++|.+.++.+.+.+.+.++.|+.+...
T Consensus        77 ~g~~~l~Ad~v~~~q~~~~~~~~~~~~a~Gnv~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~~g~A~~~~~~  155 (782)
T PRK03761         77 QGNSRLQADEVQLHQQEAPGEPVRTVDAEGNVHYDDN-QIILKGPKAWSNLNTKDTNVWNGDYQMVGRQGRGKADLMKQR  155 (782)
T ss_pred             ECCEEEECCEEEEECCCCCCCCCEEEEEECCEEEECC-CEEEEECEEEEECCCCEEEEECCEEEEECCCCEEEEEEEEEC
T ss_conf             7998999567999523786665028998689899689-618981469995377645996248999737860470025991


Q ss_pred             -CCE-EEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEECCEEEECCEEEEECCCEECCCCCCCCCCCCCC
Q ss_conf             -975-999987997313766577888508999669999677777999442899827068632540012455545454100
Q gi|254780395|r  152 -GQR-TIFDKGTYTACSSCSKPNSRPPFWIVKSKRAILNRKTHTIRLEKPYLEIFGNSIFYFPLIEIPDETVVRKTGFLT  229 (762)
Q Consensus       152 -~~~-~~~~~~~~T~C~~~~~~~~~~P~W~i~a~~i~~d~~~~~~~~~~a~l~i~~vPv~y~Py~~~P~~~~~R~sGfL~  229 (762)
                       ++. ++|++|+||+|+||++      .|+|+|++|+||+++++++++||+|+|+||||||+|||.||+++ +||||||+
T Consensus       156 ~~~~~~~l~~~~yTtC~p~~~------~W~i~A~~I~~D~~~~~~~~~nA~l~i~gvPVfY~Pyl~fP~~d-~RkSGfL~  228 (782)
T PRK03761        156 GENRYTILENGSFTSCLPGDN------SWSVVGSEIIHDREEEVAEIWNARFKVGDVPVFYSPYLQLPVGD-KRRSGFLI  228 (782)
T ss_pred             CCCCEEEECCEEECCCCCCCC------CEEEEEEEEEEECCCCEEEEEEEEEEECCCCEEECCCEECCCCC-CCCCCEEC
T ss_conf             798489981718830899899------33999458999177788999801999968106956736066788-63011377


Q ss_pred             EEEECCCCCCCCEECEEEEECCCCCCEEEEEEECCCCEEEEEEEEEEEECCCCEEEEEEEEECCCCCCC-----CCCEEE
Q ss_conf             056413333430001034302465201455420243101100134553025607999987505556765-----432011
Q gi|254780395|r  230 PLFSSGEKQRFGVGIPYYLVISDNSDATFTFSPHPKKGILGEMELRKYFHSGKHTLHAAYMYNNNVESG-----EERHQA  304 (762)
Q Consensus       230 P~~~~s~~~G~~~~~Pyy~~i~~~~D~Tltp~~~s~rG~~l~~eyRy~~~~g~~~~~~~~~~~d~~~~~-----~~~~r~  304 (762)
                      |++++|+++|+++++|||||||||+|+||+|++|++||+++++||||+.+.|.+++.++++++|+....     ..+.||
T Consensus       229 Ps~~~ss~~G~~~~~PYY~nIAPn~D~TltP~~~s~RG~~l~~EfRyl~~~g~g~i~~~~l~~D~~~~~~~~~~~~~~R~  308 (782)
T PRK03761        229 PNAKYSSKNGFEFELPYYWNIAPNYDATITPHYMSRRGWQWENEFRYLTQAGAGLMEGEYLPSDKVYDDEHPNDDNSSRW  308 (782)
T ss_pred             CCCEECCCCCEEEEEEEEEECCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEE
T ss_conf             73204488975998889996478764199448986776230067998367877249999726874344445666778506


Q ss_pred             EEEECCEECCEEEEEEEEEEEEEECCHHHHCCCCCCC--CCCEEEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCCCCC
Q ss_conf             2320210000003566789999514101100123443--21100112222033553035777777764135666655442
Q gi|254780395|r  305 MLASIAEFEINPIWNLGWHLKKQTSGQLSYNYYSDAL--SKRININQIYLTGTGEKNSFDMRALHYHIQEPLSKNEKKFP  382 (762)
Q Consensus       305 ~~~~~~~~~l~~~~~~~~~~~~~SD~~y~~dy~~d~~--~~~~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (762)
                      .+.++|+..++++|++++++..|||++|++|+.....  ....+.+.+.+.+....+.+.+++..||.++...     ..
T Consensus       309 ~~~~~h~g~~~~~w~~~~d~~~vSD~~Yf~D~~s~~~~~~~~~L~q~~~~~y~~~~~~~~~~~~~fQ~l~~~~-----~~  383 (782)
T PRK03761        309 LFYWNHSGVMDQVWRFNVDYTKVSDPSYFNDFDSKYGSSTDGYATQKFSVGYAQQNWDATLSTKQFQVFDEQN-----TS  383 (782)
T ss_pred             EEEEEEEEEECCCCEEEEEEEEECCHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEECCCCC-----CC
T ss_conf             9998674120788179888888313667764445556534001778999988237826989988758617776-----78


Q ss_pred             EEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCEEEEE
Q ss_conf             01212331110014666665168975678877750245443322345444555652146677756776432167179998
Q gi|254780395|r  383 QANIYPLIDYRYVDLQYAKSQQISITGNITAISRAKEKNTINQMKHDSQPWIPNGINRRLSIEADWRKKIIGPLGILFTP  462 (762)
Q Consensus       383 ~~~~lP~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~G~~~tp  462 (762)
                      ...++|++++++..+. ..+..+++.++.+.+.+...               .....+|++++|.|++|+..++|. ++|
T Consensus       384 py~~lPql~~~~~~~~-~~~~~~~l~~~~~~F~~~~~---------------~~~~~~R~~~~p~l~~p~~~~~g~-l~~  446 (782)
T PRK03761        384 PYRAEPQLDFNYYQND-LGPFDFRLYSQAVRFVNDSD---------------NMPEATRVHLEPTLNLPLSNRWGS-LNT  446 (782)
T ss_pred             CHHCCCEEEEEEECCC-CCCEEEEEEEEEEEEECCCC---------------CCCCEEEEEECCEEEEEEECCCEE-EEE
T ss_conf             7210617763457478-88633999977898533788---------------876448997522777774447527-989


Q ss_pred             EEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEEEEECCEE----CCCCCEEEEEEEEEEEEECCCCCCCCCCCC
Q ss_conf             8899877887512566666654456520236898989999831021----367632589877789994376666535655
Q gi|254780395|r  463 IANIRGDLHYLSFNRDLSSDTISNNPNFVASKMLTAGLDIRYPIVA----VTQKSRHILEGIAQVYAATDEKYIKTIPNE  538 (762)
Q Consensus       463 ~~~lr~~~Y~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~p~~~----~~~~~~h~LeP~~q~~~~~~~~~~~~iPn~  538 (762)
                      .+++++++|..+........ ....+..+.|.+|.++++..++|.+    .+.+++|||||++||.+.| +++|+.||||
T Consensus       447 ~~~l~~t~Y~~~~~~~~~~~-~~~~~~~~~R~~P~~~ld~~l~fer~~~~~~~~~tQtLEPr~qyly~P-~~dQs~IPnf  524 (782)
T PRK03761        447 EAKLLATHYQQDNLDSYNAN-NEKLDESVNRVIPQFKVDGKMVLERDMDMLAPGYTQTLEPRVQYLYVP-YRDQSNIYNY  524 (782)
T ss_pred             EEEEEEEEEEECCCCCCCCC-CCCCCCCEEEECCEEEEECEEEEEEECCCCCCCCEEEEEEEEEEEECC-CCCCCCCCCC
T ss_conf             86788899981167545556-556666501314348860216999842235786249995089999757-7667789765


Q ss_pred             CCCCCCCCCHHHCCCCCCCCCCEECCCEEEEEEEEEEEECCC-CCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             444322470210021223574000463478878888884288-6066323003788413333345433366677888766
Q gi|254780395|r  539 DSHSLVLNSTSLFTQNRFSGFDRIEGGNRTNLGIRYIGSFNN-LFTINGVIGRSIHILGTNSFSIPDSIGIGQNSGLEDK  617 (762)
Q Consensus       539 Ds~~~~fd~~nLF~~nrfsG~DRie~~~r~~~Gl~~~~~~~~-~~~~~~~iGQ~~~~~~~~~~~~~~~~~~~~~sgl~~~  617 (762)
                      ||+.++||++|||+.|||+|+|||++++|+++||+++..... .+.+++++||+|++.++++....    ..........
T Consensus       525 DS~~~~fd~~~LF~~nRFsG~DRI~d~nq~t~GltsR~~d~~g~E~~~~siGQi~yf~d~rv~~~~----~~~~~~~~~~  600 (782)
T PRK03761        525 DSTLLQSDYYGLFRDRTYSGLDRIASANQVTTGATTRFYDDAAVERFNISVGQIYYFTESRTGDDN----ITWENDDKTG  600 (782)
T ss_pred             CCCCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCC----CCCCCCCCCC
T ss_conf             575455576674565665675544787688887789998688824689998689992476444677----7766666566


Q ss_pred             CCCEEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEEEECCCCE-EEEEEEEECCCCC------------CCCCCEEE
Q ss_conf             4437999988436777999999861676606688999999647408-9999987226754------------46663258
Q gi|254780395|r  618 FSDYAAAVRLSLSPKITFSTQTLINPKDWSTRRTDTTIDYTMGSYE-ANISYTHIPAYPL------------YAYDARKT  684 (762)
Q Consensus       618 ~SD~v~~~~~~~~~~~~l~~~~~~d~~~~~~~r~~~~~~~~~~~~~-~~~~y~~~~~~~~------------~~~~~~~~  684 (762)
                      .|+++++..+++.+.|.+.+..+||++..++.+.+..+.|+++..+ ++++|+|......            ...+..+|
T Consensus       601 ~~~~a~~~~~~~~~~~~~~~~~qyd~~~~~~~~~~~~l~y~~~~~~~~~l~Yry~~~~yi~~~l~~~~~~~~~~~~~i~q  680 (782)
T PRK03761        601 SLVWAGETYWRISDRWGLRGGIQYDTRLDSVQLANSSLEYRRDEDRLIQLNYRYASPEYIQATLPKYYSTAEQYQQGISQ  680 (782)
T ss_pred             CCHHHHHEEEEECCCEEEEEEEEECCCCCCEEEEEEEEEEECCCCCEEEEEEEEECCHHHHCCCCCCCCCCCCCCCCCEE
T ss_conf             20312310033057389864589877678403588899994489949974523651301002344334554334576327


Q ss_pred             EEEEEEEECCCCEEEEEEEEECCCCCC-CEEEEEEEEECCEEEEEEEEEECCC--------CCCCCEEEEEEEEECCCC-
Q ss_conf             998999972565699999995165454-1225656996466999999997147--------788735999999702445-
Q gi|254780395|r  685 IQSRIKFKINDVLSADASLKWNMRAEL-PSHSIGLAYQNDCATVKIIYKNESP--------NIHGYKIQARLSLRTIGD-  754 (762)
Q Consensus       685 ~~~~~~~~l~~~w~~~~~~~ydl~~~~-~~~~~Gl~Y~~~Cw~~~l~y~r~~~--------~~~~~~i~~~~~Lk~LG~-  754 (762)
                      +.+++.|||+++|+++|.++||++.+. ++..+||+|++|||+++|+|+|...        ...+++|+|+|+|||||+ 
T Consensus       681 ~~~s~~~pi~~~W~~~g~~~YDl~~~~~~e~~~GleY~~cCW~~rl~~~R~~~~~~~~~~~~~~d~~i~~q~~lkGLg~~  760 (782)
T PRK03761        681 VGAVASWPIADRWSIVGAYYYDTNANKPAEQLLGLQYNSCCWAIGVGYERKLTGWDNDKQHPVYDNNIGFNIELRGLSSN  760 (782)
T ss_pred             EEEEEEEEECCCEEEEEEEEEECCCCEEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCC
T ss_conf             88999998038889999999847689282258533796786999999999972776776663004249999998423677


Q ss_pred             CCC
Q ss_conf             587
Q gi|254780395|r  755 FNP  757 (762)
Q Consensus       755 ~~~  757 (762)
                      +..
T Consensus       761 ~g~  763 (782)
T PRK03761        761 YGL  763 (782)
T ss_pred             CCC
T ss_conf             788


No 3  
>COG1452 Imp Organic solvent tolerance protein OstA [Cell envelope biogenesis, outer membrane]
Probab=100.00  E-value=0  Score=848.14  Aligned_cols=676  Identities=24%  Similarity=0.354  Sum_probs=557.7

Q ss_pred             CCCE-EEEEEEEEEEECCCCEEEEEEEEEEEECCEEEEEEEEEEECCCCEEEEECCEEEECCCCCEEEEEEEEEECCCCE
Q ss_conf             6660-799920799976689799998799998996999518999863787999734899838987899706999430255
Q gi|254780395|r   48 RHSE-LDISSDEIVLNSEGSTTTAVGNVKIEYKGYHLSARDITFNHKNHRIIASGNIKLIEPDKRQIHAEYLDITDDFTN  126 (762)
Q Consensus        48 ~~~~-~~~~ad~~~~~~~~~~~~a~G~v~i~~~~~~l~Ad~i~y~~~~~~~~a~G~v~~~~~~g~~~~~~~~~~~~~~~~  126 (762)
                      ...| +.++||.++++.+.++|+|+|||+|.+++++|.||+|+||+++++++|+|||++.+++|..+.|+++++++++++
T Consensus        48 ~~~p~~~iea~~~~~~~~~~~ita~GnV~i~~~~~~l~Ad~v~y~q~t~~~~A~GnV~~~~~~g~~i~gd~a~~~ld~~~  127 (784)
T COG1452          48 QNLPKILIEADALEYNRKDQIITAEGNVEILYGDYRLLADKVDYDQKTDRVTATGNVEYIDGDGILIKGDKADVNLDTKK  127 (784)
T ss_pred             CCCCCEEEEHHHHCCCCCCCEEEEECEEEEEECCEEEEEEEEEEECCCCEEEEECCEEEECCCCCEEECCEEEEECCCCC
T ss_conf             56984589800200147785699966299996888998758997234788999777999828980998756899614576


Q ss_pred             EEEEEEEEEEECCCEEEEEEEEEE-CCCEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEECCEEEECC
Q ss_conf             999847999706750210246872-3975999987997313766577888508999669999677777999442899827
Q gi|254780395|r  127 GIIKNLTIKIPADETYLTASSAQI-IGQRTIFDKGTYTACSSCSKPNSRPPFWIVKSKRAILNRKTHTIRLEKPYLEIFG  205 (762)
Q Consensus       127 g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~T~C~~~~~~~~~~P~W~i~a~~i~~d~~~~~~~~~~a~l~i~~  205 (762)
                      |.+.++++.+.+..++++|+.+++ +++.+++++|+||+|+||++     |+|+|+|++|.+|.+++.+.++||+|+|+|
T Consensus       128 g~~~n~~~~~~~~~~~~~A~~a~~~d~~~~~l~~at~TtC~~~dn-----p~W~v~A~~i~~~~~~~~~~~~na~f~v~g  202 (784)
T COG1452         128 GFVSNFRYQTVGRQGRFVAKSAERRDNDVTILKNATYTTCEPCDN-----PIWSVKASKIIQNREKQFAVFWNARFEVGG  202 (784)
T ss_pred             CEEEEEEEEECCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCC-----CCEEEEEEEEEECCCCCEEEEEEEEEEECC
T ss_conf             458600898525225799855221487069995108823688899-----725999648998177858999956999888


Q ss_pred             EEEEECCCEECCCCCCCCCCCCCCEEEECCCCCCCCEECEEEEECCCCCCEEEEEEECCCCEEEEEEEEEEEECCCCEEE
Q ss_conf             06863254001245554545410005641333343000103430246520145542024310110013455302560799
Q gi|254780395|r  206 NSIFYFPLIEIPDETVVRKTGFLTPLFSSGEKQRFGVGIPYYLVISDNSDATFTFSPHPKKGILGEMELRKYFHSGKHTL  285 (762)
Q Consensus       206 vPv~y~Py~~~P~~~~~R~sGfL~P~~~~s~~~G~~~~~Pyy~~i~~~~D~Tltp~~~s~rG~~l~~eyRy~~~~g~~~~  285 (762)
                      |||||+|||.||+++ +||||||+|++++++++|+++.+|||||||||+|+||+|+||+|||.++++||||++..|.+.+
T Consensus       203 vPVfYlPyf~~P~~~-~RkSGFL~P~~~~ss~~Gf~~~~PyY~~laPn~DlTltp~y~skrG~~l~~e~Ryl~~~g~~~~  281 (784)
T COG1452         203 VPVFYLPYFFFPDDD-RRKSGFLIPSFGYSSRNGFSYGQPYYWNLAPNYDLTLTPQYMSKRGFGLEGEFRYLFSNGAGQL  281 (784)
T ss_pred             CCEEEEEEEECCCCC-CCCCCCCCCCCCCCCCCCCEEECCEEEECCCCCCCEECHHHHHHHCCCCCEEEEEECCCCCCEE
T ss_conf             025950036140798-4422211354244588880783614784268988498667886608542236998614898427


Q ss_pred             EEEEEECCCCCCCC-------CCEEEEEEECCEECCEEEEEEEEEEEEEECCHHHHCCCCCCCCCCEEEEEEEECCCCCC
Q ss_conf             99875055567654-------32011232021000000356678999951410110012344321100112222033553
Q gi|254780395|r  286 HAAYMYNNNVESGE-------ERHQAMLASIAEFEINPIWNLGWHLKKQTSGQLSYNYYSDALSKRININQIYLTGTGEK  358 (762)
Q Consensus       286 ~~~~~~~d~~~~~~-------~~~r~~~~~~~~~~l~~~~~~~~~~~~~SD~~y~~dy~~d~~~~~~~~s~~~l~~~~~~  358 (762)
                      .+.++++++.....       .++|+++..+|.|.++ .|.+++++..+||..|.+||...  ......++.+++.....
T Consensus       282 ~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~-~w~~~v~~~~vSD~~y~~d~~~~--~~~~~~s~~y~t~~~~~  358 (784)
T COG1452         282 RGAGLPQDDSYYFGDDTRGNEVRWRYYWNHSGDFDQN-RWKFGVDVERVSDPNYFNDFDIR--YSSVSTSDGYLTQLGRR  358 (784)
T ss_pred             ECCCCCCCCHHHCCCCCCCCCCCCEEHHHCCCCHHHC-CEEECCCEEEECCHHHHHHHCCC--CCEEEEEEEEECCEEEE
T ss_conf             5131356563231554334433210033305752003-33303542586373254331156--63589802023023015


Q ss_pred             EEEEEEEEEEEEECC---CCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             035777777764135---66665544201212331110014666665168975678877750245443322345444555
Q gi|254780395|r  359 NSFDMRALHYHIQEP---LSKNEKKFPQANIYPLIDYRYVDLQYAKSQQISITGNITAISRAKEKNTINQMKHDSQPWIP  435 (762)
Q Consensus       359 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~lP~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~  435 (762)
                      .||..+.+.+..+..   ...++.....+.++|+++++|.......+ .++++.+.+...+......             
T Consensus       359 ~Y~~~~~~~~~l~~~~f~~~~~~~~~~~~~~~P~l~~~y~~~~~~~~-~L~~~~~s~~~~f~~~~~~-------------  424 (784)
T COG1452         359 NYFALENLNFGLQIKYFQNLTNEKDNKPYNALPQLDYNYYLNDPVLG-ELNFTLDSQFVRFSNDDDY-------------  424 (784)
T ss_pred             EEEECCCCEEEEEEECCCCHHHHHCCCCCCCCCEEEECCCCCCCCCC-CEEEEEEEEEEEEECCCCC-------------
T ss_conf             67604673599885100001233035764215426533546876554-2134300799998415666-------------


Q ss_pred             CCCEEEEEEEEEEEEEEECCCCEEEEEEEEEEEEEEEEECCCCCCCC------CCCCCCCEE-EEEEEEEEEEEEECCEE
Q ss_conf             65214667775677643216717999888998778875125666666------544565202-36898989999831021
Q gi|254780395|r  436 NGINRRLSIEADWRKKIIGPLGILFTPIANIRGDLHYLSFNRDLSSD------TISNNPNFV-ASKMLTAGLDIRYPIVA  508 (762)
Q Consensus       436 ~~~~~R~~~~~~~~~~~~~~~G~~~tp~~~lr~~~Y~~~~~~~~~~~------~~~~~~~~~-~r~~~~~~l~~~~p~~~  508 (762)
                      .....|++.+|.++.++..++| .+++..++..+.|..+.......+      ......+.. .+.+...++..+.|+..
T Consensus       425 ~~~~~r~~~~p~~~~~~~~~~~-~~~~~~gl~~t~y~~d~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~R~~~~~  503 (784)
T COG1452         425 MPERTRLHVEPSLRLSLSNSWG-SFGTESGLLATPYALDRGDAYDVDTNTADKASKFVNRSLPQRNMDSGGTLERDPLLF  503 (784)
T ss_pred             CCCEEECCCCCCCCCEEEECCE-EECCCCCEEECHHHHHCCCCCCCCCCCHHHHCCCCCCCCEEEEECCCCEEEEEEEEC
T ss_conf             6430202356765513781021-334685306415565368554455443012213544320279832554088532413


Q ss_pred             CCCCCEEEEEEEEEEEEECCCCCCCCCC--CCCCCCCCCCCHHHCCCCCCCCCCEECCCEEEEEEEEEEEECCCC-CEEE
Q ss_conf             3676325898777899943766665356--554443224702100212235740004634788788888842886-0663
Q gi|254780395|r  509 VTQKSRHILEGIAQVYAATDEKYIKTIP--NEDSHSLVLNSTSLFTQNRFSGFDRIEGGNRTNLGIRYIGSFNNL-FTIN  585 (762)
Q Consensus       509 ~~~~~~h~LeP~~q~~~~~~~~~~~~iP--n~Ds~~~~fd~~nLF~~nrfsG~DRie~~~r~~~Gl~~~~~~~~~-~~~~  585 (762)
                      .. +..|||||++|+.+. |+++|+.+|  ++|++.++|+++|||+.|||+|+|||++++|+++|++.+..+..+ +.++
T Consensus       504 ~~-~~~~tlEP~~~y~y~-p~~~q~~~~~~~~Ds~~~~f~~~~LFr~~~ysG~Dri~~~n~ls~g~~~~~~d~~g~e~~~  581 (784)
T COG1452         504 GI-GYTQTLEPRAQYLYR-PYEDQSGIPLYNEDSQSLQFDYSNLFRDNRYSGYDRIEGANQLSLGVRSRFTDDAGFERLN  581 (784)
T ss_pred             CC-CCEEEECCCEEEEEC-CHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCHHHHH
T ss_conf             67-513641550047666-8788547765455502200254223012776762102778636565542344156242231


Q ss_pred             EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEEEECCCCE-E
Q ss_conf             230037884133333454333666778887664437999988436777999999861676606688999999647408-9
Q gi|254780395|r  586 GVIGRSIHILGTNSFSIPDSIGIGQNSGLEDKFSDYAAAVRLSLSPKITFSTQTLINPKDWSTRRTDTTIDYTMGSYE-A  664 (762)
Q Consensus       586 ~~iGQ~~~~~~~~~~~~~~~~~~~~~sgl~~~~SD~v~~~~~~~~~~~~l~~~~~~d~~~~~~~r~~~~~~~~~~~~~-~  664 (762)
                      +.+||++++...+..       .+.........|+++....+++...|.+.+..+||.+...+...+....|+++... +
T Consensus       582 ~~~GQ~~y~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~y~~~~~~~~  654 (784)
T COG1452         582 ASAGQSYYFKGSRLL-------IPSDDKVPVGRSPWESAATYDINDGLNLSGSVQYDPSLNRRSLGSSGAEYRPEFKKII  654 (784)
T ss_pred             CCCCEEEEECCCCCC-------CCCCCCCCCCCCCCHHHCCCCHHHCEEEEEEEEECHHHCCCCCCCCHHEECCCCCCCE
T ss_conf             014707774365355-------7765555434345555405164121666212650632254300210110045545440


Q ss_pred             EEEEEEECCCCCCC--------CCCEEEEEEEEEEECCCCEEEEEEEEECCCCC-CCEEEEEEEEECCEEEEEEEEEECC
Q ss_conf             99998722675446--------66325899899997256569999999516545-4122565699646699999999714
Q gi|254780395|r  665 NISYTHIPAYPLYA--------YDARKTIQSRIKFKINDVLSADASLKWNMRAE-LPSHSIGLAYQNDCATVKIIYKNES  735 (762)
Q Consensus       665 ~~~y~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~w~~~~~~~ydl~~~-~~~~~~Gl~Y~~~Cw~~~l~y~r~~  735 (762)
                      .++|+|........        .+..+|+.+++.|+|+++|+++|.+.||+..+ ..++.+|++|.+|||.+++.+++..
T Consensus       655 ~~~y~y~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~i~~~ws~~g~~~yd~~~~~~~~~~lG~~Y~~~Cw~~~~~~~~~~  734 (784)
T COG1452         655 QLNYRYLSDEYIYISLQSSYGYKNKISQLGASAGYPLTKNWSVFGRIYYDLRADKPLERFLGVAYQSSCWAVRLGLSRYS  734 (784)
T ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEEEEEECCCCCCHHHHHCCEEEECCCHHEEEEEEEEE
T ss_conf             24455404311311345444667652698677788820537999778613135843433117277121101453346885


Q ss_pred             C---------CCCCCEEEEEEEEECCCCCC
Q ss_conf             7---------78873599999970244558
Q gi|254780395|r  736 P---------NIHGYKIQARLSLRTIGDFN  756 (762)
Q Consensus       736 ~---------~~~~~~i~~~~~Lk~LG~~~  756 (762)
                      +         ...+.++.|.++|++||++.
T Consensus       735 ~~~~~~~~~~~~~~~~i~f~i~lr~lg~~~  764 (784)
T COG1452         735 NSRNNNDRLHLKFDSSIGFNISLRGLGDIG  764 (784)
T ss_pred             ECCCCCCCEEEEECCCCEEEEEEEECCCCC
T ss_conf             023688504663126517999997448765


No 4  
>pfam04453 OstA_C Organic solvent tolerance protein. Family involved in organic solvent tolerance in bacteria. The region contains several highly conserved, potentially catalytic, residues.
Probab=100.00  E-value=0  Score=393.99  Aligned_cols=371  Identities=23%  Similarity=0.304  Sum_probs=311.0

Q ss_pred             CEEEEEEECCEECCEEEEEEEEEEEEEECCHHHHCCCCCC--CCCCEEEEEEEECCCCCCEEEEEEEEEEEEECCCCCCC
Q ss_conf             2011232021000000356678999951410110012344--32110011222203355303577777776413566665
Q gi|254780395|r  301 RHQAMLASIAEFEINPIWNLGWHLKKQTSGQLSYNYYSDA--LSKRININQIYLTGTGEKNSFDMRALHYHIQEPLSKNE  378 (762)
Q Consensus       301 ~~r~~~~~~~~~~l~~~~~~~~~~~~~SD~~y~~dy~~d~--~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (762)
                      +.||++.++|.+.|+++|+++++++.|||++|++||..+.  .....+.+.+.+.+..+++++.+++.+||.+.....+ 
T Consensus         1 ~~Rg~~~~~~~~~l~~~w~~~~d~~~vSD~~Yl~d~~~~~~~~s~~~L~~~~~~~y~~~~~~~~~~~~~fq~L~~~~~~-   79 (382)
T pfam04453         1 KNRGYVFAKHQFRINDNWSFGVDYTYVSDKNYFRDYSSNLGLRSQTYLLRQGRLSYRGENWDFSLRAQYYQTLRDSIIS-   79 (382)
T ss_pred             CCCEEEEEEEEEECCCCEEEEEEEEEECHHHHHHHCCCCCCCCCHHHEEEEEEEEEECCCCEEEEEEEEEEECCCCCCC-
T ss_conf             9313498574376599979999999943688897618775542412421576788883772899999999933777666-


Q ss_pred             CCCCEEEECCCCCCCCCCCCCCC-CCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEECCCC
Q ss_conf             54420121233111001466666-51689756788777502454433223454445556521466777567764321671
Q gi|254780395|r  379 KKFPQANIYPLIDYRYVDLQYAK-SQQISITGNITAISRAKEKNTINQMKHDSQPWIPNGINRRLSIEADWRKKIIGPLG  457 (762)
Q Consensus       379 ~~~~~~~~lP~i~~~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~G  457 (762)
                       ..+...++|.+++++....... +..++++++.+++.|..+..                ..+|++++|.|++|+..++|
T Consensus        80 -~~~py~~lP~l~~~~~~~~~~~~~l~~~~~~~~~~f~~~~~~~----------------~~~R~~~~~~~~~~~~~~~g  142 (382)
T pfam04453        80 -NDTPYQRLPQLDYNYYLPDLFLGGLDFSFDSQYRNFARDDDDQ----------------PGTRLHLEPELSLPFSTPWG  142 (382)
T ss_pred             -CCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEEEECCCCCC----------------CEEEEEEEEEEEEEEECCCE
T ss_conf             -6777366259999988178776637999998899987058997----------------25899999999777876876


Q ss_pred             EEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEEEEECCEEC---CCCCEEEEEEEEEEEEECCCCCCCC
Q ss_conf             7999888998778875125666666544565202368989899998310213---6763258987778999437666653
Q gi|254780395|r  458 ILFTPIANIRGDLHYLSFNRDLSSDTISNNPNFVASKMLTAGLDIRYPIVAV---TQKSRHILEGIAQVYAATDEKYIKT  534 (762)
Q Consensus       458 ~~~tp~~~lr~~~Y~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~p~~~~---~~~~~h~LeP~~q~~~~~~~~~~~~  534 (762)
                      + ++|.++++++.|.++..................|.+|.+++++++||.+.   +.+++|+|||+++|.+.| +.+|+.
T Consensus       143 ~-~~~~~~l~~~~Y~~~~~~~~~~~~~~~~~~~~~r~~p~~~l~~~~~f~R~~~~~~~~~~~LeP~~~y~~~p-~~~q~~  220 (382)
T pfam04453       143 F-LTPELSLRGTYYDLDVNYGPGNRITGGLDSSVSRVLPTFSLDSGLPFERDTELGGGYTQTLEPRAQYLYVP-YRDQGN  220 (382)
T ss_pred             E-EEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEECCCCCCEEEEEEEEEEEEEC-CCCCCC
T ss_conf             9-96999998779983157777655566667742066046888864289998436887349997899999805-766665


Q ss_pred             CCCCCCCCCCCCCHHHCCCCCCCCCCEECCCEEEEEEEEEEEECCC-CCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             5655444322470210021223574000463478878888884288-606632300378841333334543336667788
Q gi|254780395|r  535 IPNEDSHSLVLNSTSLFTQNRFSGFDRIEGGNRTNLGIRYIGSFNN-LFTINGVIGRSIHILGTNSFSIPDSIGIGQNSG  613 (762)
Q Consensus       535 iPn~Ds~~~~fd~~nLF~~nrfsG~DRie~~~r~~~Gl~~~~~~~~-~~~~~~~iGQ~~~~~~~~~~~~~~~~~~~~~sg  613 (762)
                      ||||||..++||++|||+.|||+|.|||++++++++||+++....+ ++.+++.+||++++.+.+.+..      +..++
T Consensus       221 iP~~Ds~~~~f~~~nLF~~nrfsG~DRi~~~n~~t~Gl~~~~~~~~~~~~~~~~~GQ~~~~~~~~~~l~------~~~~~  294 (382)
T pfam04453       221 LPNFDSSSLDFDYTNLFRDNRFSGYDRIEDANRLTYGLTSRFFDDNGGERLRLSLGQSFYLSDSRVFLV------GDESG  294 (382)
T ss_pred             CCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCCC------CCCCC
T ss_conf             767654313569678632055777665588868999999999916996599999879999278754357------77777


Q ss_pred             CCCCCCCEEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEEEECCCC-EEEEEEEEECCCCCCCC---CCEEEEEEEE
Q ss_conf             8766443799998843677799999986167660668899999964740-89999987226754466---6325899899
Q gi|254780395|r  614 LEDKFSDYAAAVRLSLSPKITFSTQTLINPKDWSTRRTDTTIDYTMGSY-EANISYTHIPAYPLYAY---DARKTIQSRI  689 (762)
Q Consensus       614 l~~~~SD~v~~~~~~~~~~~~l~~~~~~d~~~~~~~r~~~~~~~~~~~~-~~~~~y~~~~~~~~~~~---~~~~~~~~~~  689 (762)
                      +++++||+++++.++|.++|++.++++||++..++.+.++++.|++++. .++++|+|.+..+....   +..+|+.+++
T Consensus       295 ~~~~~Sd~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~y~~~~~~~~~l~Yry~~~~~~~~~~~~~~~~q~~~s~  374 (382)
T pfam04453       295 LTRRFSDLVAELSFNPNEGLSLSSSIQYDPNTNRFERAEVGLSYRPDRGNSINLGYRYRRDDPDYQYATNNGISQIGLSA  374 (382)
T ss_pred             CCCCCCCEEEEEEEEECCCEEEEEEEEECCCCCCEEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEEE
T ss_conf             55663411467899866978999889988888940899999999879998999998885275432346778724699999


Q ss_pred             EEECCCCE
Q ss_conf             99725656
Q gi|254780395|r  690 KFKINDVL  697 (762)
Q Consensus       690 ~~~l~~~w  697 (762)
                      .|||+++|
T Consensus       375 ~~pi~~~W  382 (382)
T pfam04453       375 QYPLARNW  382 (382)
T ss_pred             EEECCCCC
T ss_conf             96768899


No 5  
>COG1452 Imp Organic solvent tolerance protein OstA [Cell envelope biogenesis, outer membrane]
Probab=99.30  E-value=1.2e-07  Score=68.01  Aligned_cols=179  Identities=17%  Similarity=0.110  Sum_probs=111.3

Q ss_pred             EEEEEEEEEEECCCCEEEEEEEEEEEE-CCEEEEEEEEEEECCCCEEEEE-CCEEEECCCCCEEEEEEEEEECCCCEEEE
Q ss_conf             799920799976689799998799998-9969995189998637879997-34899838987899706999430255999
Q gi|254780395|r   52 LDISSDEIVLNSEGSTTTAVGNVKIEY-KGYHLSARDITFNHKNHRIIAS-GNIKLIEPDKRQIHAEYLDITDDFTNGII  129 (762)
Q Consensus        52 ~~~~ad~~~~~~~~~~~~a~G~v~i~~-~~~~l~Ad~i~y~~~~~~~~a~-G~v~~~~~~g~~~~~~~~~~~~~~~~g~~  129 (762)
                      ..|.||++.||+.++.++|+|||++.. ++..+.+|++.++.+++.-.+. +-+.+.+. +....|+.++... .....+
T Consensus        82 ~~l~Ad~v~y~q~t~~~~A~GnV~~~~~~g~~i~gd~a~~~ld~~~g~~~n~~~~~~~~-~~~~~A~~a~~~d-~~~~~l  159 (784)
T COG1452          82 YRLLADKVDYDQKTDRVTATGNVEYIDGDGILIKGDKADVNLDTKKGFVSNFRYQTVGR-QGRFVAKSAERRD-NDVTIL  159 (784)
T ss_pred             EEEEEEEEEEECCCCEEEEECCEEEECCCCCEEECCEEEEECCCCCCEEEEEEEEECCC-EEEEEEEEEEECC-CEEEEE
T ss_conf             89987589972347889997779998289809987568996145764586008985252-2579985522148-706999


Q ss_pred             EEEEEEEEC---CC-EEEEEEEEEECC--CEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEECCEEEE
Q ss_conf             847999706---75-021024687239--759999879973137665778885089996699996777779994428998
Q gi|254780395|r  130 KNLTIKIPA---DE-TYLTASSAQIIG--QRTIFDKGTYTACSSCSKPNSRPPFWIVKSKRAILNRKTHTIRLEKPYLEI  203 (762)
Q Consensus       130 ~~~~~~~~~---~~-~~~~~~~~~~~~--~~~~~~~~~~T~C~~~~~~~~~~P~W~i~a~~i~~d~~~~~~~~~~a~l~i  203 (762)
                      +++.+-.++   +. ..+.|+.+..+.  +..++.+|.+---        ..|..++=.=.+=.+...+-+-. -+.+..
T Consensus       160 ~~at~TtC~~~dnp~W~v~A~~i~~~~~~~~~~~~na~f~v~--------gvPVfYlPyf~~P~~~~RkSGFL-~P~~~~  230 (784)
T COG1452         160 KNATYTTCEPCDNPIWSVKASKIIQNREKQFAVFWNARFEVG--------GVPVFYLPYFFFPDDDRRKSGFL-IPSFGY  230 (784)
T ss_pred             EEEEEECCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEEEC--------CCCEEEEEEEECCCCCCCCCCCC-CCCCCC
T ss_conf             510882368889972599964899817785899995699988--------80259500361407984422211-354244


Q ss_pred             CC-EE-EEECCCEECCCCCCCCCCCCCCEEEECCCCCCCCEECEE
Q ss_conf             27-06-863254001245554545410005641333343000103
Q gi|254780395|r  204 FG-NS-IFYFPLIEIPDETVVRKTGFLTPLFSSGEKQRFGVGIPY  246 (762)
Q Consensus       204 ~~-vP-v~y~Py~~~P~~~~~R~sGfL~P~~~~s~~~G~~~~~Py  246 (762)
                      .. -+ .++.||+..+-|.-.   ==|.|  .+-+++|+.+..-|
T Consensus       231 ss~~Gf~~~~PyY~~laPn~D---lTltp--~y~skrG~~l~~e~  270 (784)
T COG1452         231 SSRNGFSYGQPYYWNLAPNYD---LTLTP--QYMSKRGFGLEGEF  270 (784)
T ss_pred             CCCCCCEEECCEEEECCCCCC---CEECH--HHHHHHCCCCCEEE
T ss_conf             588880783614784268988---49866--78866085422369


No 6  
>PRK04423 organic solvent tolerance protein; Provisional
Probab=99.26  E-value=2.1e-07  Score=66.52  Aligned_cols=196  Identities=16%  Similarity=0.117  Sum_probs=101.4

Q ss_pred             EEEEEEEEEEEECCCCEEEEEEEEEEEECCEEEEEEEEEEECCCCEEEEEC-CEEEECCCCCEEEEEEEEEECCCCEEEE
Q ss_conf             079992079997668979999879999899699951899986378799973-4899838987899706999430255999
Q gi|254780395|r   51 ELDISSDEIVLNSEGSTTTAVGNVKIEYKGYHLSARDITFNHKNHRIIASG-NIKLIEPDKRQIHAEYLDITDDFTNGII  129 (762)
Q Consensus        51 ~~~~~ad~~~~~~~~~~~~a~G~v~i~~~~~~l~Ad~i~y~~~~~~~~a~G-~v~~~~~~g~~~~~~~~~~~~~~~~g~~  129 (762)
                      ...|.||++.|+++++.+.|+|||.+..++.+|.||++.++..++...+.+ ...+.+.. ..-.|+.++++.  +...+
T Consensus        86 ~~~l~AD~v~ydq~~~~v~A~GnV~~~~~~~~~~g~~~~~~l~~~~g~~~~~~y~l~~~~-~~G~A~~~~~~g--~~~~l  162 (798)
T PRK04423         86 DQFLGADNLRMDTETGNYIAEGNVRYQDTSIRMVADRAEGNQDTDTHKITNIQYQLVERR-GNGDAESVDLQG--QVGQM  162 (798)
T ss_pred             CEEEEEEEEEEECCCCEEEEECCEEEECCCCEEECCEEEEECCCCEEEEECCEEEEEECC-CCEEEEEEEECC--CEEEE
T ss_conf             989991179998678989997778996798589814289982676479966789999467-723667767448--64799


Q ss_pred             EEEEEEEEC---CCEEEEEEEEEEC--CCEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEECCEEEEC
Q ss_conf             847999706---7502102468723--97599998799731376657788850899966999967777799944289982
Q gi|254780395|r  130 KNLTIKIPA---DETYLTASSAQII--GQRTIFDKGTYTACSSCSKPNSRPPFWIVKSKRAILNRKTHTIRLEKPYLEIF  204 (762)
Q Consensus       130 ~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~T~C~~~~~~~~~~P~W~i~a~~i~~d~~~~~~~~~~a~l~i~  204 (762)
                      +++.+-...   ....+.|+.+..+  .+.-+..++++---.        .|..++=-=+.-++.+.+-+..- ..+..-
T Consensus       163 ~~~~~ttC~~~~~~W~~~a~~i~~d~~~~~~~~~~a~~~~~~--------vPv~y~Py~~fp~~~~R~sG~L~-P~~~~s  233 (798)
T PRK04423        163 HRSTYTTCDPSQPIWRLRAPEIDVDNDEGFGTARNAVLQIGK--------VPVLYFPWFKFPIDDRRQTGLLF-PQLGLS  233 (798)
T ss_pred             ECCEECCCCCCCCCEEEEECEEEEECCCCEEEEEEEEEEECC--------EEEEECCCEECCCCCCCCCEEEC-CCCCCC
T ss_conf             571983289889835999457998077888999945999998--------91793476845269984324364-666414


Q ss_pred             C--EEEEECCCEECCCCCCCCCCCCCCEEEECCCCCCCCEECEEEEECCCCCCEEEEEEECC
Q ss_conf             7--06863254001245554545410005641333343000103430246520145542024
Q gi|254780395|r  205 G--NSIFYFPLIEIPDETVVRKTGFLTPLFSSGEKQRFGVGIPYYLVISDNSDATFTFSPHP  264 (762)
Q Consensus       205 ~--vPv~y~Py~~~P~~~~~R~sGfL~P~~~~s~~~G~~~~~Pyy~~i~~~~D~Tltp~~~s  264 (762)
                      .  =-.+-+||..---|.   .---|.|  .+-+++|+.+..-|-+ +.++..-++...|+.
T Consensus       234 ~~~G~~~~~PyY~niapn---~D~T~tp--r~ms~RG~~l~~EfRY-L~~~~~G~~~~~yLp  289 (798)
T PRK04423        234 GRNGFDYAQPIYLNLAPN---YDATLLP--RYMSKRGFMFDTEFRY-LYDGGRGEVTGNFLP  289 (798)
T ss_pred             CCCCEEEEEEEEEECCCC---CCCEEEH--HHHHHCCCCCCCEEEE-CCCCCCCEEEEEECC
T ss_conf             899769999998852776---4418701--1442126310325897-267887418644447


No 7  
>pfam03968 OstA OstA-like protein. This family of proteins are mostly uncharacterized. However the family does include E. coli OstA that has been characterized as an organic solvent tolerance protein.
Probab=99.23  E-value=3.4e-09  Score=78.50  Aligned_cols=60  Identities=20%  Similarity=0.363  Sum_probs=49.9

Q ss_pred             CCCCEEEEEEEEEEEECCCCEEEEEEEEEEEECCEEEEEEEEEEECCC-----CEEEEECCEEEE
Q ss_conf             666607999207999766897999987999989969995189998637-----879997348998
Q gi|254780395|r   47 NRHSELDISSDEIVLNSEGSTTTAVGNVKIEYKGYHLSARDITFNHKN-----HRIIASGNIKLI  106 (762)
Q Consensus        47 ~~~~~~~~~ad~~~~~~~~~~~~a~G~v~i~~~~~~l~Ad~i~y~~~~-----~~~~a~G~v~~~  106 (762)
                      ....||.|+||+++++...+.++.+|||+|.|++.+|+||+++...+.     ..+.|.|++.+.
T Consensus        23 D~~~PI~I~AD~~~~d~~~~~~~~~GnV~i~QG~~~i~ad~~~i~~~~~~~~~~~~~a~g~~~~~   87 (141)
T pfam03968        23 DRDQPIEIEADNLEADDKKGVATFTGNVVVTQGSITLRADKVVVTQDKKSNGIERLEATGPATFR   87 (141)
T ss_pred             CCCCCEEEEEEEEEEECCCCEEEEECCEEEEECCEEEEEEEEEEEECCCCCCEEEEEEECCEEEE
T ss_conf             67999899945799982799999987499980870999648999986888967999997760499


No 8  
>PRK10894 hypothetical protein; Provisional
Probab=99.22  E-value=1.3e-09  Score=81.35  Aligned_cols=83  Identities=17%  Similarity=0.228  Sum_probs=58.5

Q ss_pred             CCCCCEEEEEEEEEEEECCCCEEEEEEEEEEEECCEEEEEEEEEEECCC-----CEEEEECCEE-EEC--CCCCEEE--E
Q ss_conf             7666607999207999766897999987999989969995189998637-----8799973489-983--8987899--7
Q gi|254780395|r   46 TNRHSELDISSDEIVLNSEGSTTTAVGNVKIEYKGYHLSARDITFNHKN-----HRIIASGNIK-LIE--PDKRQIH--A  115 (762)
Q Consensus        46 ~~~~~~~~~~ad~~~~~~~~~~~~a~G~v~i~~~~~~l~Ad~i~y~~~~-----~~~~a~G~v~-~~~--~~g~~~~--~  115 (762)
                      .+.+.||.|+||++++|...++.+.+|||+|.||..+|.||+++.....     ..+.|.|+.. +.+  .+|..+.  |
T Consensus        30 sD~~qPI~I~AD~~~~d~~~~~avytGNVvitQGsl~I~ADkv~v~~~~~~~~~~~i~a~G~pA~f~Q~~~~g~~i~a~A  109 (184)
T PRK10894         30 GDTEQPIHIDSDQQSLDMQGNVVTFTGNVVVTQGTIKINADKVVVTRPGGEQGKEVIDGYGNPATFYQMQDNGKPVKGHA  109 (184)
T ss_pred             CCCCCCEEEEECEEEEECCCCEEEEEEEEEEEEEEEEEEEEEEEEEECCCCCCEEEEEEECCCEEEEEECCCCCCEEEEE
T ss_conf             34469989994528943159989999259999625999935899997699753799999689379999656898137697


Q ss_pred             EEEEEECCCCEEE
Q ss_conf             0699943025599
Q gi|254780395|r  116 EYLDITDDFTNGI  128 (762)
Q Consensus       116 ~~~~~~~~~~~g~  128 (762)
                      ++++|+.....-.
T Consensus       110 ~~i~Y~~~~~~i~  122 (184)
T PRK10894        110 SKMHYELAKDFVV  122 (184)
T ss_pred             EEEEEECCCCEEE
T ss_conf             4899982699999


No 9  
>COG1934 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.07  E-value=3.2e-08  Score=71.92  Aligned_cols=83  Identities=19%  Similarity=0.226  Sum_probs=61.2

Q ss_pred             CCCEEEEEEEEEEEECCCCEEEEEEEEEEEECCEEEEEEEEEEEC--CCC--EEEEECC----EEEECCCCC--EEEEEE
Q ss_conf             666079992079997668979999879999899699951899986--378--7999734----899838987--899706
Q gi|254780395|r   48 RHSELDISSDEIVLNSEGSTTTAVGNVKIEYKGYHLSARDITFNH--KNH--RIIASGN----IKLIEPDKR--QIHAEY  117 (762)
Q Consensus        48 ~~~~~~~~ad~~~~~~~~~~~~a~G~v~i~~~~~~l~Ad~i~y~~--~~~--~~~a~G~----v~~~~~~g~--~~~~~~  117 (762)
                      .+.||.++||..+.+..+++++.+|||+|.++..+|+||++++..  +.+  .++|.||    +...++ |.  .-+|++
T Consensus        29 ~~qPi~i~ad~~el~~~~~~a~ftGNV~i~qG~~~l~Adkv~v~~~~~~~~~~i~a~gn~~~~~q~~~~-~k~~~g~ad~  107 (173)
T COG1934          29 RDQPITIEADQQELDDKNGVATFTGNVVVTQGTITLRADKVTVTRDKEGGKEVIEANGNPATFSQKVDN-GKTQKGTADQ  107 (173)
T ss_pred             CCCCEEEECCCEEEECCCCEEEEECCEEEEECCCEEEEEEEEEECCCCCCCEEEEEECCEEEEEEEECC-CCCEEEEEEE
T ss_conf             558779972522430668779997638998466179713699980578985489995466678876507-8503888516


Q ss_pred             EEEECCCCEEEEEE
Q ss_conf             99943025599984
Q gi|254780395|r  118 LDITDDFTNGIIKN  131 (762)
Q Consensus       118 ~~~~~~~~~g~~~~  131 (762)
                      +.|+...+.-.+.+
T Consensus       108 ~~Y~~~~~~~vLtG  121 (173)
T COG1934         108 AIYDLKNDTIVLTG  121 (173)
T ss_pred             EEEEECCCEEEEEC
T ss_conf             99982078999947


No 10 
>PRK03761 organic solvent tolerance protein; Provisional
Probab=99.05  E-value=2e-06  Score=60.02  Aligned_cols=115  Identities=13%  Similarity=0.110  Sum_probs=85.2

Q ss_pred             CEEEEEEEEEEEECCCC------EEEEEEEEEEEECCEEEEEEEEEEECCCCEEEEE-CCEEEECCCCCEEEEEEEEEEC
Q ss_conf             60799920799976689------7999987999989969995189998637879997-3489983898789970699943
Q gi|254780395|r   50 SELDISSDEIVLNSEGS------TTTAVGNVKIEYKGYHLSARDITFNHKNHRIIAS-GNIKLIEPDKRQIHAEYLDITD  122 (762)
Q Consensus        50 ~~~~~~ad~~~~~~~~~------~~~a~G~v~i~~~~~~l~Ad~i~y~~~~~~~~a~-G~v~~~~~~g~~~~~~~~~~~~  122 (762)
                      +...|.||++.+++.++      +|+|+|||.+..++..+.+|++.+|..++...+. +..+|.... ..-.|++++...
T Consensus        78 g~~~l~Ad~v~~~q~~~~~~~~~~~~a~Gnv~~~~~~~~~~g~~~~~~~~~~~~~~~~~~y~~~~~~-~~g~A~~~~~~~  156 (782)
T PRK03761         78 GNSRLQADEVQLHQQEAPGEPVRTVDAEGNVHYDDNQIILKGPKAWSNLNTKDTNVWNGDYQMVGRQ-GRGKADLMKQRG  156 (782)
T ss_pred             CCEEEECCEEEEECCCCCCCCCEEEEEECCEEEECCCEEEEECEEEEECCCCEEEEECCEEEEECCC-CEEEEEEEEECC
T ss_conf             9989995679995237866650289986898996896189814699953776459962489997378-604700259917


Q ss_pred             CCCEEEEEEEEEEEE---CCCEEEEEEEEEECC--CEEEEEEEEEEEC
Q ss_conf             025599984799970---675021024687239--7599998799731
Q gi|254780395|r  123 DFTNGIIKNLTIKIP---ADETYLTASSAQIIG--QRTIFDKGTYTAC  165 (762)
Q Consensus       123 ~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~T~C  165 (762)
                      +.+--+++++.+-.+   ++...+.|+.+..+.  +...+++|.+---
T Consensus       157 ~~~~~~l~~~~yTtC~p~~~~W~i~A~~I~~D~~~~~~~~~nA~l~i~  204 (782)
T PRK03761        157 ENRYTILENGSFTSCLPGDNSWSVVGSEIIHDREEEVAEIWNARFKVG  204 (782)
T ss_pred             CCCEEEECCEEECCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEC
T ss_conf             984899817188308998993399945899917778899980199996


No 11 
>TIGR03002 outer_YhbN cell envelope biogenesis protein YhbN; InterPro: IPR014340   Members of this entry include YhbN, which is an essential protein in Escherichia coli. It is implicated in cell envelope integrity, and has numerous homologues in other Proteobacteria in a conserved location near lipopolysaccharide inner core biosynthesis genes. This entry is distantly related to the organic solvent tolerance protein (OstA)..
Probab=98.96  E-value=1.2e-07  Score=68.03  Aligned_cols=102  Identities=17%  Similarity=0.293  Sum_probs=71.8

Q ss_pred             CCCCCEEEEEEEEEEEECCCCEEEEEEEEEEEECCEEEEEEEEEEEC--CCC---EEEEECC--EEEEC--CCCCE-EE-
Q ss_conf             76666079992079997668979999879999899699951899986--378---7999734--89983--89878-99-
Q gi|254780395|r   46 TNRHSELDISSDEIVLNSEGSTTTAVGNVKIEYKGYHLSARDITFNH--KNH---RIIASGN--IKLIE--PDKRQ-IH-  114 (762)
Q Consensus        46 ~~~~~~~~~~ad~~~~~~~~~~~~a~G~v~i~~~~~~l~Ad~i~y~~--~~~---~~~a~G~--v~~~~--~~g~~-~~-  114 (762)
                      .+.+.||.|+||+.++|..+++++.+|||+|.||...|+||+|+..+  ..+   .+.|.|+  +.|.+  .+|.. +. 
T Consensus         4 ~D~~qPi~I~Ad~~~~D~~~~~~~f~GnV~itQG~~~I~ADkv~v~~~~~~~~~~~~~A~G~~PA~F~q~~d~g~~~~~g   83 (150)
T TIGR03002         4 SDREQPIEIEADSQTLDDKKNVVTFTGNVVITQGTLKIRADKVVVTRPNDGGGIEKATATGNKPATFRQKLDDGKEYIEG   83 (150)
T ss_pred             CCCCCCEEEEEEEEEEECCCCEEEEECCEEEEECCEEEECCEEEEEECCCCCCEEEEEEECCCCEEEEEEECCCCEEEEE
T ss_conf             87568689994006654028838886565878297598522889882688786089999807818988995599827999


Q ss_pred             -EEEEEEECCCCEEEEE-EEEEEEECCC-EEEEEEEEE
Q ss_conf             -7069994302559998-4799970675-021024687
Q gi|254780395|r  115 -AEYLDITDDFTNGIIK-NLTIKIPADE-TYLTASSAQ  149 (762)
Q Consensus       115 -~~~~~~~~~~~~g~~~-~~~~~~~~~~-~~~~~~~~~  149 (762)
                       |++++|+.....-.|. ++++  .+.+ --+.|+.|.
T Consensus        84 ~A~~i~Y~~~~~~~~Ltg~A~v--~Q~~k~~~~G~~I~  119 (150)
T TIGR03002        84 QANRIEYDPAKDTVVLTGNARV--KQGGKNEVSGDVIT  119 (150)
T ss_pred             ECCEEEEECCCCEEEEECCEEE--EECCCCEEECCEEE
T ss_conf             7118999325779999123499--78897778766889


No 12 
>COG1934 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.51  E-value=7.8e-06  Score=56.01  Aligned_cols=83  Identities=17%  Similarity=0.287  Sum_probs=67.5

Q ss_pred             CCCCEEEEEEEEEEEEC--CCC--EEEEEEE----EEEEECCE--EEEEEEEEEECCCCEEEEECCEEEECCCCCEEEEE
Q ss_conf             66660799920799976--689--7999987----99998996--99951899986378799973489983898789970
Q gi|254780395|r   47 NRHSELDISSDEIVLNS--EGS--TTTAVGN----VKIEYKGY--HLSARDITFNHKNHRIIASGNIKLIEPDKRQIHAE  116 (762)
Q Consensus        47 ~~~~~~~~~ad~~~~~~--~~~--~~~a~G~----v~i~~~~~--~l~Ad~i~y~~~~~~~~a~G~v~~~~~~g~~~~~~  116 (762)
                      ....++.|.||.++...  +.+  .+.|.||    ++..+.+.  .=+||+++||-+++++.+.||+.+.+ +|+.++|+
T Consensus        57 i~qG~~~l~Adkv~v~~~~~~~~~~i~a~gn~~~~~q~~~~~k~~~g~ad~~~Y~~~~~~~vLtGna~v~q-~gn~i~G~  135 (173)
T COG1934          57 VTQGTITLRADKVTVTRDKEGGKEVIEANGNPATFSQKVDNGKTQKGTADQAIYDLKNDTIVLTGNAYVLQ-LGNVIRGD  135 (173)
T ss_pred             EEECCCEEEEEEEEEECCCCCCCEEEEEECCEEEEEEEECCCCCEEEEEEEEEEEECCCEEEEECCEEEEE-CCCEEEEE
T ss_conf             98466179713699980578985489995466678876507850388851699982078999947799985-79888763


Q ss_pred             EEEEECCCCEEEEE
Q ss_conf             69994302559998
Q gi|254780395|r  117 YLDITDDFTNGIIK  130 (762)
Q Consensus       117 ~~~~~~~~~~g~~~  130 (762)
                      ++.++.+.+...+.
T Consensus       136 kIty~~~~~~~~a~  149 (173)
T COG1934         136 KITYLTKTGRAVAE  149 (173)
T ss_pred             EEEEECCCCEEEEC
T ss_conf             99999434579962


No 13 
>pfam06835 DUF1239 Protein of unknown function (DUF1239). This family consists of several hypothetical bacterial proteins of around 190 residues in length. The function of this family is unknown.
Probab=98.33  E-value=3e-05  Score=52.10  Aligned_cols=108  Identities=16%  Similarity=0.214  Sum_probs=70.6

Q ss_pred             CEEEEEEEEEEEECCCCEEEEEEEEEEEE-CC---EEEEEEEEEEECCCCEEEEECCEEEECCCC----CEEEEEEEEEE
Q ss_conf             60799920799976689799998799998-99---699951899986378799973489983898----78997069994
Q gi|254780395|r   50 SELDISSDEIVLNSEGSTTTAVGNVKIEY-KG---YHLSARDITFNHKNHRIIASGNIKLIEPDK----RQIHAEYLDIT  121 (762)
Q Consensus        50 ~~~~~~ad~~~~~~~~~~~~a~G~v~i~~-~~---~~l~Ad~i~y~~~~~~~~a~G~v~~~~~~g----~~~~~~~~~~~  121 (762)
                      -...+.|+++.+..+.+...++.=+...+ ++   .++.|++..++.+.+.+.+.|+|++....+    ..+..+.+.++
T Consensus        51 l~~~l~a~~~~~~~~~~~~~l~~P~~~~~~~~~~~w~i~A~~g~~~~~~~~i~L~g~V~i~~~~~~~~~~~l~T~~l~~~  130 (176)
T pfam06835        51 LQYRLTADKLEHYPDDDTTEFTNPVLIIYQDGKPPWTITADRAKLNKDGQTLYLYGNVVIQSLEDKSRLTTITTENLTVN  130 (176)
T ss_pred             EEEEEEECEEEEECCCCCEEEEEEEEEEECCCCCEEEEEECEEEEECCCCEEEEECCEEEEECCCCCCCEEEEEHEEEEE
T ss_conf             99999904579965899689996399997799836999979499937996999989999997689987569992209999


Q ss_pred             CCCCEEEEEEEEEEEECCCEEEEEEEEEE--CCCEEEEE
Q ss_conf             30255999847999706750210246872--39759999
Q gi|254780395|r  122 DDFTNGIIKNLTIKIPADETYLTASSAQI--IGQRTIFD  158 (762)
Q Consensus       122 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  158 (762)
                      .+.+...-..+.. +..+.....|...+.  ..+...|.
T Consensus       131 ~~~~~~~td~~V~-i~~~~~~~~g~gm~~~l~~~~~~l~  168 (176)
T pfam06835       131 LDTQDASTDQPVT-ITGPNFVSTGTGMKANLKTGTAELL  168 (176)
T ss_pred             CCCCEEEECCCEE-EEECCCEEEEEEEEEECCCCEEEEE
T ss_conf             4777999487499-9909979998889999758999994


No 14 
>pfam03968 OstA OstA-like protein. This family of proteins are mostly uncharacterized. However the family does include E. coli OstA that has been characterized as an organic solvent tolerance protein.
Probab=98.31  E-value=2.5e-05  Score=52.67  Aligned_cols=76  Identities=14%  Similarity=0.246  Sum_probs=48.7

Q ss_pred             CCEEEEEEEEEEEECCC-----CEEEEEEEE------EEEECCEEEEEEEEEEECCCCEEEEECCEEEECCCCCEEEEEE
Q ss_conf             66079992079997668-----979999879------9998996999518999863787999734899838987899706
Q gi|254780395|r   49 HSELDISSDEIVLNSEG-----STTTAVGNV------KIEYKGYHLSARDITFNHKNHRIIASGNIKLIEPDKRQIHAEY  117 (762)
Q Consensus        49 ~~~~~~~ad~~~~~~~~-----~~~~a~G~v------~i~~~~~~l~Ad~i~y~~~~~~~~a~G~v~~~~~~g~~~~~~~  117 (762)
                      .+.+.|.||+|+...+.     ..+.|.|++      .+..+...-+||+++|+..++.+.+.||+++.++ ++++.|++
T Consensus        54 QG~~~i~ad~~~i~~~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~a~a~~~~Y~~~~~~i~L~Gna~l~q~-~n~i~G~~  132 (141)
T pfam03968        54 QGSITLRADKVVVTQDKKSNGIERLEATGPATFRQKVDLVGRQIRGTADRAEYDSKKRIIVLTGNAVLTQG-GNSIRGDK  132 (141)
T ss_pred             ECCEEEEEEEEEEEECCCCCCEEEEEEECCEEEEEEEECCCCCEEEEEEEEEEEECCCEEEEECCEEEEEC-CCEEEECE
T ss_conf             08709996489999868889679999977604999861488867999718999916999999733999989-99999689


Q ss_pred             EEEECCCC
Q ss_conf             99943025
Q gi|254780395|r  118 LDITDDFT  125 (762)
Q Consensus       118 ~~~~~~~~  125 (762)
                      +.++++.+
T Consensus       133 I~ydl~~g  140 (141)
T pfam03968       133 ITYDIKEG  140 (141)
T ss_pred             EEEECCCC
T ss_conf             99997679


No 15 
>PRK10894 hypothetical protein; Provisional
Probab=98.08  E-value=4.3e-05  Score=51.05  Aligned_cols=81  Identities=15%  Similarity=0.216  Sum_probs=60.0

Q ss_pred             CCCEEEEEEEEEEEEC--C---CCEEEEEEEEEEEE----CCE--EEEEEEEEEECCCCEEEEECCEEEECCCCCEEEEE
Q ss_conf             6660799920799976--6---89799998799998----996--99951899986378799973489983898789970
Q gi|254780395|r   48 RHSELDISSDEIVLNS--E---GSTTTAVGNVKIEY----KGY--HLSARDITFNHKNHRIIASGNIKLIEPDKRQIHAE  116 (762)
Q Consensus        48 ~~~~~~~~ad~~~~~~--~---~~~~~a~G~v~i~~----~~~--~l~Ad~i~y~~~~~~~~a~G~v~~~~~~g~~~~~~  116 (762)
                      .++.+.|.||.|+.-.  .   ...+.|.|+...++    ++.  .=+|++|.|+..++++.+.||+++.++ ++.+.|+
T Consensus        61 tQGsl~I~ADkv~v~~~~~~~~~~~i~a~G~pA~f~Q~~~~g~~i~a~A~~i~Y~~~~~~i~L~GnA~L~Q~-~~~v~G~  139 (184)
T PRK10894         61 TQGTIKINADKVVVTRPGGEQGKEVIDGYGNPATFYQMQDNGKPVKGHASKMHYELAKDFVVLTGNAYLEQL-DSNIKGD  139 (184)
T ss_pred             EEEEEEEEEEEEEEEECCCCCCEEEEEEECCCEEEEEECCCCCCEEEEEEEEEEECCCCEEEEECCEEEEEC-CCEEEEC
T ss_conf             962599993589999769975379999968937999965689813769748999826999999765899968-9989937


Q ss_pred             EEEEECCCCEEEE
Q ss_conf             6999430255999
Q gi|254780395|r  117 YLDITDDFTNGII  129 (762)
Q Consensus       117 ~~~~~~~~~~g~~  129 (762)
                      ++.|+.+.+.-.+
T Consensus       140 ~I~Ydl~~~~~~a  152 (184)
T PRK10894        140 KITYLVKEQKMQA  152 (184)
T ss_pred             EEEEEECCCEEEE
T ss_conf             8999906679999


No 16 
>TIGR03002 outer_YhbN cell envelope biogenesis protein YhbN; InterPro: IPR014340   Members of this entry include YhbN, which is an essential protein in Escherichia coli. It is implicated in cell envelope integrity, and has numerous homologues in other Proteobacteria in a conserved location near lipopolysaccharide inner core biosynthesis genes. This entry is distantly related to the organic solvent tolerance protein (OstA)..
Probab=98.00  E-value=3e-05  Score=52.06  Aligned_cols=109  Identities=12%  Similarity=0.148  Sum_probs=55.3

Q ss_pred             CCEEEEEEEEEEECCCCEEEEECCEEEECCCCCEEEEEEEEEEC--CCCE---EEE--E-EEEEE--EECCC--EEEEEE
Q ss_conf             99699951899986378799973489983898789970699943--0255---999--8-47999--70675--021024
Q gi|254780395|r   79 KGYHLSARDITFNHKNHRIIASGNIKLIEPDKRQIHAEYLDITD--DFTN---GII--K-NLTIK--IPADE--TYLTAS  146 (762)
Q Consensus        79 ~~~~l~Ad~i~y~~~~~~~~a~G~v~~~~~~g~~~~~~~~~~~~--~~~~---g~~--~-~~~~~--~~~~~--~~~~~~  146 (762)
                      ....|.||+..+|.+++.+..+|||.++++. ..|.||++.+..  +.+.   ...  . -+.|.  +.++.  ..+.|+
T Consensus         8 qPi~I~Ad~~~~D~~~~~~~f~GnV~itQG~-~~I~ADkv~v~~~~~~~~~~~~~A~G~~PA~F~q~~d~g~~~~~g~A~   86 (150)
T TIGR03002         8 QPIEIEADSQTLDDKKNVVTFTGNVVITQGT-LKIRADKVVVTRPNDGGGIEKATATGNKPATFRQKLDDGKEYIEGQAN   86 (150)
T ss_pred             CCEEEEEEEEEEECCCCEEEEECCEEEEECC-EEEECCEEEEEECCCCCCEEEEEEECCCCEEEEEEECCCCEEEEEECC
T ss_conf             8689994006654028838886565878297-598522889882688786089999807818988995599827999711


Q ss_pred             EEEE--CCCEEEE-EEEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEC
Q ss_conf             6872--3975999-98799731376657788850899966999967777799944
Q gi|254780395|r  147 SAQI--IGQRTIF-DKGTYTACSSCSKPNSRPPFWIVKSKRAILNRKTHTIRLEK  198 (762)
Q Consensus       147 ~~~~--~~~~~~~-~~~~~T~C~~~~~~~~~~P~W~i~a~~i~~d~~~~~~~~~~  198 (762)
                      .++-  ..+..+| .+|...-=  .     +   =.|++++|++|..++.+.+..
T Consensus        87 ~i~Y~~~~~~~~Ltg~A~v~Q~--~-----k---~~~~G~~I~Y~~~~q~~~a~~  131 (150)
T TIGR03002        87 RIEYDPAKDTVVLTGNARVKQG--G-----K---NEVSGDVITYDTKKQKVTAKG  131 (150)
T ss_pred             EEEEECCCCEEEEECCEEEEEC--C-----C---CEEECCEEEEECEEEEEEEEE
T ss_conf             8999325779999123499788--9-----7---778766889844012998980


No 17 
>pfam06835 DUF1239 Protein of unknown function (DUF1239). This family consists of several hypothetical bacterial proteins of around 190 residues in length. The function of this family is unknown.
Probab=97.59  E-value=0.0053  Score=37.05  Aligned_cols=80  Identities=16%  Similarity=0.184  Sum_probs=53.0

Q ss_pred             CCEEEEEEEEEEEECCCCEEEEEEEEEEEEC-----CEEEEEEEEEEECCCCEEEEECCEEEECCCCCEEEEEEEEEECC
Q ss_conf             6607999207999766897999987999989-----96999518999863787999734899838987899706999430
Q gi|254780395|r   49 HSELDISSDEIVLNSEGSTTTAVGNVKIEYK-----GYHLSARDITFNHKNHRIIASGNIKLIEPDKRQIHAEYLDITDD  123 (762)
Q Consensus        49 ~~~~~~~ad~~~~~~~~~~~~a~G~v~i~~~-----~~~l~Ad~i~y~~~~~~~~a~G~v~~~~~~g~~~~~~~~~~~~~  123 (762)
                      ..++.+.|+.-.+..+.+.+.+.|||+|.+.     ..+|..+.+.|+.+++.+.-..+|++..+ +..+.|..+.++++
T Consensus        83 ~~~w~i~A~~g~~~~~~~~i~L~g~V~i~~~~~~~~~~~l~T~~l~~~~~~~~~~td~~V~i~~~-~~~~~g~gm~~~l~  161 (176)
T pfam06835        83 KPPWTITADRAKLNKDGQTLYLYGNVVIQSLEDKSRLTTITTENLTVNLDTQDASTDQPVTITGP-NFVSTGTGMKANLK  161 (176)
T ss_pred             CCEEEEEECEEEEECCCCEEEEECCEEEEECCCCCCCEEEEEHEEEEECCCCEEEECCCEEEEEC-CCEEEEEEEEEECC
T ss_conf             83699997949993799699998999999768998756999220999947779994874999909-97999888999975


Q ss_pred             CCEEEE
Q ss_conf             255999
Q gi|254780395|r  124 FTNGII  129 (762)
Q Consensus       124 ~~~g~~  129 (762)
                      .+.-.+
T Consensus       162 ~~~~~l  167 (176)
T pfam06835       162 TGTAEL  167 (176)
T ss_pred             CCEEEE
T ss_conf             899999


No 18 
>COG5375 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.34  E-value=0.0053  Score=37.07  Aligned_cols=120  Identities=11%  Similarity=0.156  Sum_probs=80.8

Q ss_pred             CCCCCEEEEEEEEEEEECCC-CEEEEEE-EEEEEEC---CEEEEEEEEEEECCCCEEEEECCEEEECCCCCEEEEEEEEE
Q ss_conf             76666079992079997668-9799998-7999989---96999518999863787999734899838987899706999
Q gi|254780395|r   46 TNRHSELDISSDEIVLNSEG-STTTAVG-NVKIEYK---GYHLSARDITFNHKNHRIIASGNIKLIEPDKRQIHAEYLDI  120 (762)
Q Consensus        46 ~~~~~~~~~~ad~~~~~~~~-~~~~a~G-~v~i~~~---~~~l~Ad~i~y~~~~~~~~a~G~v~~~~~~g~~~~~~~~~~  120 (762)
                      ....-|..+.|++...|..+ +.++++| ++.+-.+   -.++.|.+=+||+.++.+.+.-.|.+...+|.....+++.+
T Consensus        86 nk~~~~ysitA~RAiqD~~n~~~i~Le~i~a~~pvg~~~~a~v~Ak~Gvyd~~~ntL~l~~dv~i~~~eGi~a~~~sA~v  165 (216)
T COG5375          86 NKDGRPYSITAERAIQDVKNPNIITLEGILAILPVGEDNPAQVTAKSGVYDRDTNTLDLTDDVKITTDEGIRADFQSAFV  165 (216)
T ss_pred             CCCCCEEEEEHHHHHHCCCCCCEEEEEEEEEECCCCCCCCEEEEECCCEEECCCCEEECCCCEEEECCHHHHCCCCHHEE
T ss_conf             27897503307777650268874899600155247999734687123426667871324687688535433135601246


Q ss_pred             ECCCCEEEEEE-EEEEEECCCEEEEEEEEE--ECCCEEEEEEEEEEECCC
Q ss_conf             43025599984-799970675021024687--239759999879973137
Q gi|254780395|r  121 TDDFTNGIIKN-LTIKIPADETYLTASSAQ--IIGQRTIFDKGTYTACSS  167 (762)
Q Consensus       121 ~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~T~C~~  167 (762)
                      |+  ++|.+.. ..+........+.++..+  -+|+..+|+.++=|..+|
T Consensus       166 Dl--~~G~~sg~~pv~i~~~~gsI~ads~~v~D~G~iivF~g~Vr~~id~  213 (216)
T COG5375         166 DL--RTGNMSGDSPVDISGKGGSITADSYSVTDKGKIIVFEGNVRTRIDP  213 (216)
T ss_pred             EE--CCCCCCCCCCEEECCCCCCEEEEEEEEECCCCEEEEECCEEEEECC
T ss_conf             60--2561026786333079984876136752288489995656898447


No 19 
>PRK10893 hypothetical protein; Provisional
Probab=96.75  E-value=0.037  Score=31.42  Aligned_cols=115  Identities=10%  Similarity=0.097  Sum_probs=72.7

Q ss_pred             EEEEEEEEEEECCCCEEEEEEEEEEEEC-C----EEEEEEEEEEECCCCEEEEECCEEEEC--CC--CCEEEEEEEEEEC
Q ss_conf             7999207999766897999987999989-9----699951899986378799973489983--89--8789970699943
Q gi|254780395|r   52 LDISSDEIVLNSEGSTTTAVGNVKIEYK-G----YHLSARDITFNHKNHRIIASGNIKLIE--PD--KRQIHAEYLDITD  122 (762)
Q Consensus        52 ~~~~ad~~~~~~~~~~~~a~G~v~i~~~-~----~~l~Ad~i~y~~~~~~~~a~G~v~~~~--~~--g~~~~~~~~~~~~  122 (762)
                      -.+.||++++=.+.+....+-=|...|+ +    ..++|+++..+.+ +.+.++|||++..  ++  -..+..+.+++++
T Consensus        60 y~i~A~~~eHY~~~~~T~F~~Pvl~ly~~~~~~~W~VsA~~a~L~~d-~~L~L~gnV~i~~L~~~s~iq~I~T~~l~idL  138 (190)
T PRK10893         60 YRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKVPTWSVKADKAKLTND-RMLYLYGHVEVNALTPDSQLRRITTDNAQINL  138 (190)
T ss_pred             EEEEECHHHHCCCCCCEEEECCEEEEECCCCCCCEEEEECEEEECCC-CEEEEECCEEEEECCCCCCCCEEECCCEEEEC
T ss_conf             89997142013137958981865999889995327999456798648-88999777999853897545389827589804


Q ss_pred             CCCEEEEEEEEEEEECCCEEEEEEEEEE--CCCEEEEEEEEEEECCCC
Q ss_conf             0255999847999706750210246872--397599998799731376
Q gi|254780395|r  123 DFTNGIIKNLTIKIPADETYLTASSAQI--IGQRTIFDKGTYTACSSC  168 (762)
Q Consensus       123 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~T~C~~~  168 (762)
                      .+++..-+.... +...+....|...+.  ......|.+-+-|.-++.
T Consensus       139 ~tqd~~SD~~Vt-I~G~~f~s~G~gm~anL~~~~a~L~~~Vkt~YEi~  185 (190)
T PRK10893        139 VTQDVTSDDLVT-LYGTTFNSSGLKMRGNLRSKNAELIEKVRTSYEIQ  185 (190)
T ss_pred             CCCEEECCCEEE-EECCCCEEEEEEEEEEHHHCEEEEHHHCCEEEECC
T ss_conf             664686387099-98798399861089993658889045061999636


No 20 
>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane. The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.
Probab=96.69  E-value=0.041  Score=31.15  Aligned_cols=104  Identities=14%  Similarity=0.260  Sum_probs=79.8

Q ss_pred             CEEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEEECCCCEEE
Q ss_conf             37999988436777999999861676606688999999647408999998722675446663258998999972565699
Q gi|254780395|r  620 DYAAAVRLSLSPKITFSTQTLINPKDWSTRRTDTTIDYTMGSYEANISYTHIPAYPLYAYDARKTIQSRIKFKINDVLSA  699 (762)
Q Consensus       620 D~v~~~~~~~~~~~~l~~~~~~d~~~~~~~r~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~~  699 (762)
                      +.+.-.-+-..++|.+.+++-||.....+.+..+.+.|+.+.+.+++.-   .        +-+++.++.-.+++++|.+
T Consensus       130 p~~~~s~v~g~~~~~~G~~~~yd~~~~~~~k~~~~~gy~~~d~~~~l~l---~--------n~~~~~~S~~~~v~~~~~v  198 (276)
T cd07306         130 PLVGASAVLGYKGFLLGAEVVYDTAKSKFTKYNFALGYTNGDFELSLKL---N--------NGKTLRGSYFHKVSPRLAV  198 (276)
T ss_pred             CEEEEEEEECCCCEEEEEEEEEECCCCCEEEEEEEEEEECCCCEEEEEE---C--------CCCEEEEEEEEECCCCEEE
T ss_conf             7657999964676798999998433483412789999845881899997---6--------9778999999993876489


Q ss_pred             EEEEEECCCCCCCEEEEEEEEECCE-----------EEEEEEEEEC
Q ss_conf             9999951654541225656996466-----------9999999971
Q gi|254780395|r  700 DASLKWNMRAELPSHSIGLAYQNDC-----------ATVKIIYKNE  734 (762)
Q Consensus       700 ~~~~~ydl~~~~~~~~~Gl~Y~~~C-----------w~~~l~y~r~  734 (762)
                      .+...|..........+|-+|.-++           -.+++.|+..
T Consensus       199 a~~~~~~~~~~~~~~~vG~~y~ld~~t~vKaKvn~~g~~gl~yq~~  244 (276)
T cd07306         199 GAKVTWYSGTNETTFAVGGQYALDPDALVKAKVNNDGQLGLSYQHK  244 (276)
T ss_pred             EEEEEEECCCCCCEEEEEEEEECCCCCEEEEEECCCCEEEEEEEEE
T ss_conf             9999995289971899999998079978999997897399999995


No 21 
>pfam01459 Porin_3 Eukaryotic porin.
Probab=96.55  E-value=0.051  Score=30.52  Aligned_cols=117  Identities=13%  Similarity=0.297  Sum_probs=85.2

Q ss_pred             CEEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEEECCCCEEE
Q ss_conf             37999988436777999999861676606688999999647408999998722675446663258998999972565699
Q gi|254780395|r  620 DYAAAVRLSLSPKITFSTQTLINPKDWSTRRTDTTIDYTMGSYEANISYTHIPAYPLYAYDARKTIQSRIKFKINDVLSA  699 (762)
Q Consensus       620 D~v~~~~~~~~~~~~l~~~~~~d~~~~~~~r~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~~  699 (762)
                      .+.+.+-..+. +|.+.+..-||.....+......++|..+.+.+.+...          +...++.++.-.+++++|.+
T Consensus       132 ~~~~s~~~~~~-~~~lG~e~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~----------~~~~~l~~Sy~~kvs~~~~~  200 (272)
T pfam01459       132 IVVGSALQGVT-GLALGAEAGYDTASGKLTKYNAALGYAARDYIASLTLN----------NKGDTLTASYYHKVSDKLEV  200 (272)
T ss_pred             EEEEEEEEECC-CEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEEEEC----------CCCCEEEEEEEEECCCCEEE
T ss_conf             89999999047-47889999995377862223699999769839999991----------78876999999991885799


Q ss_pred             EEEEEECCCCCCCEEEEEEEEE-----------CCEEEEEEEEEECCCCCCCCEEEEEEEE
Q ss_conf             9999951654541225656996-----------4669999999971477887359999997
Q gi|254780395|r  700 DASLKWNMRAELPSHSIGLAYQ-----------NDCATVKIIYKNESPNIHGYKIQARLSL  749 (762)
Q Consensus       700 ~~~~~ydl~~~~~~~~~Gl~Y~-----------~~Cw~~~l~y~r~~~~~~~~~i~~~~~L  749 (762)
                      .+...++.........+|.+|.           +.+|.+++.|+..-.  +.-.+.+..++
T Consensus       201 g~e~~~~~~~~~~~~~vG~qy~l~~~~~~kakids~g~v~~~~~~~l~--~~~~ltls~~~  259 (272)
T pfam01459       201 GAELTWNFSSNENTTTVGYKYDLDPSTTVKAKVDSNGKVGLLLEKRLR--PGVTLTLSAEV  259 (272)
T ss_pred             EEEEEEECCCCCEEEEEEEEEECCCCCEEEEEECCCCEEEEEEEEECC--CCCEEEEEEEE
T ss_conf             999998027897189999999739998899998899999999999638--99399999998


No 22 
>PRK10716 long-chain fatty acid outer membrane transporter; Provisional
Probab=92.10  E-value=0.68  Score=22.98  Aligned_cols=51  Identities=8%  Similarity=0.090  Sum_probs=28.7

Q ss_pred             CEEEEEEEEEEECCCCEEEEEEEEECCCCC--CCEEEEEEEEECCEEEEEEEE
Q ss_conf             325899899997256569999999516545--412256569964669999999
Q gi|254780395|r  681 ARKTIQSRIKFKINDVLSADASLKWNMRAE--LPSHSIGLAYQNDCATVKIIY  731 (762)
Q Consensus       681 ~~~~~~~~~~~~l~~~w~~~~~~~ydl~~~--~~~~~~Gl~Y~~~Cw~~~l~y  731 (762)
                      +|.-+.+++.|+++++|++...+.|=.-++  +.+..+..+|+...|.+++.+
T Consensus       381 dR~~~S~G~~y~~~~~~tvD~ay~yi~~~~~~i~~~~~~~~~~~~a~i~g~~~  433 (437)
T PRK10716        381 DRFWLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLFGTNF  433 (437)
T ss_pred             CCEEEEEEEEEECCCCCEEEEEEEEEECCCCCEECCCEEEEEEEEEEEEEEEE
T ss_conf             88599812688548895799988999426641542403568723489999888


No 23 
>PRK09980 ompL outer membrane porin L; Provisional
Probab=90.92  E-value=0.89  Score=22.18  Aligned_cols=99  Identities=11%  Similarity=0.215  Sum_probs=56.4

Q ss_pred             EEEEEECCCCEEEEEEEEECCCC------------CEEEEEEEEEEEEC-CCCEEEEEEEEECCCCCC--C--CCCEEEE
Q ss_conf             99988436777999999861676------------60668899999964-740899999872267544--6--6632589
Q gi|254780395|r  623 AAVRLSLSPKITFSTQTLINPKD------------WSTRRTDTTIDYTM-GSYEANISYTHIPAYPLY--A--YDARKTI  685 (762)
Q Consensus       623 ~~~~~~~~~~~~l~~~~~~d~~~------------~~~~r~~~~~~~~~-~~~~~~~~y~~~~~~~~~--~--~~~~~~~  685 (762)
                      +.+.++..+.+.+..|.|||..+            .+..|.+.-+.+.. +.|.+...+.|....+..  .  .+...|.
T Consensus       108 Lkl~Y~fd~~~~~~~RYRYd~~~yds~dlnG~~d~~d~hr~d~Y~~y~~~~~~~~~~~~tY~~~vnd~~~~NgKk~~~E~  187 (230)
T PRK09980        108 LDVNYKFTPWFNLTVRNRYNHNNYSSTDLNGELDNNDSYEIGNYWNFIITDKFSYTFEPHYFYNVNDFNSSNGTKHHWEI  187 (230)
T ss_pred             EEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEEEEEEEEECCCCEECCCCCHHHHE
T ss_conf             77777665871588998852455674345776677750773005778975743799730999850770732786404431


Q ss_pred             EEEEEEECCCCEEEEEEEEE-CCC-C--CCC--EEEEEEEEE
Q ss_conf             98999972565699999995-165-4--541--225656996
Q gi|254780395|r  686 QSRIKFKINDVLSADASLKW-NMR-A--ELP--SHSIGLAYQ  721 (762)
Q Consensus       686 ~~~~~~~l~~~w~~~~~~~y-dl~-~--~~~--~~~~Gl~Y~  721 (762)
                      ++.+.+++++.|.=...+.| |.. .  ++.  +-++|+.|.
T Consensus       188 n~~~~Yk~~~~w~PY~E~~~ld~~~~~~~r~q~r~RVGv~y~  229 (230)
T PRK09980        188 TNTFRYRINEHWLPYFELRWLDRNVGPYHREQNQIRIGAKYF  229 (230)
T ss_pred             EEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEEEEEEE
T ss_conf             026888428962431898742235676777135799988862


No 24 
>KOG3126 consensus
Probab=85.97  E-value=1.9  Score=20.03  Aligned_cols=47  Identities=6%  Similarity=0.089  Sum_probs=37.3

Q ss_pred             EEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEEEECCCCEEEEE
Q ss_conf             79999884367779999998616766066889999996474089999
Q gi|254780395|r  621 YAAAVRLSLSPKITFSTQTLINPKDWSTRRTDTTIDYTMGSYEANIS  667 (762)
Q Consensus       621 ~v~~~~~~~~~~~~l~~~~~~d~~~~~~~r~~~~~~~~~~~~~~~~~  667 (762)
                      ++...-+-..++|-+.+++-||.....+.+..+.+.|+.+...+.+.
T Consensus       136 ~i~~s~v~g~~g~l~G~~~~fDt~~~~~t~~n~~lgy~~~d~~l~~~  182 (281)
T KOG3126         136 LILGSLVLGHEGWLLGYETTFDTASGKLTKYNAALGYTTEDFTLHLN  182 (281)
T ss_pred             EEEEEEEECCCCEEEEEEEEEECCCCCEEEEEEEEEEECCCCEEEEE
T ss_conf             38888994444347777788851688374267788752687389887


No 25 
>TIGR03509 OMP_MtrB_PioB decaheme-associated outer membrane protein, MtrB/PioB family. Members of this protein family are integral proteins of the bacterial outer membrane, associated with multiheme c-type cytochromes involved in electron transfer. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decaheme cytochrome MtrA and large, surface-exposed decaheme cytochrome MtrC.
Probab=84.82  E-value=2.1  Score=19.67  Aligned_cols=26  Identities=8%  Similarity=0.208  Sum_probs=20.7

Q ss_pred             CEEEEEEEEEEECCCCEEEEEEEEEC
Q ss_conf             32589989999725656999999951
Q gi|254780395|r  681 ARKTIQSRIKFKINDVLSADASLKWN  706 (762)
Q Consensus       681 ~~~~~~~~~~~~l~~~w~~~~~~~yd  706 (762)
                      ....+.+.+.++++++..+...+.|.
T Consensus       581 ~~h~l~~~~~Y~ls~~~~lrl~y~yE  606 (649)
T TIGR03509       581 NQHRLKLYGKYQLSKSSSLRLDYRYE  606 (649)
T ss_pred             EEEEEEEEEEEEECCCCEEEEEEEEE
T ss_conf             57999888657626671788778899


No 26 
>TIGR03014 EpsL exopolysaccharide biosynthesis operon protein EpsL. The epsL gene is described as a component of the methanolan exopolysaccharide biosynthesis operon in Methylobacillus sp strain 12S, although no other information regarding its possible function is suggested. Homologs of this gene are found in several other exopolysaccharide operons in a small number of species. These operons contain a subset of the methanolan operon genes by homology and synteny, including the epsH gene which is proposed to act as an "exosortase" directing proteins with a C-terminal tag (PEP-CTERM) to the exopolysaccharide layer. Each of the genomes in which these genes and epsL are found also encode genes with these C-terminal tags.
Probab=83.48  E-value=2.4  Score=19.30  Aligned_cols=147  Identities=14%  Similarity=0.123  Sum_probs=60.2

Q ss_pred             CEEEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEE--EEEEEECCCCEEEEEEEE--
Q ss_conf             3478878888884288606632300378841333334543336667788876644379--999884367779999998--
Q gi|254780395|r  565 GNRTNLGIRYIGSFNNLFTINGVIGRSIHILGTNSFSIPDSIGIGQNSGLEDKFSDYA--AAVRLSLSPKITFSTQTL--  640 (762)
Q Consensus       565 ~~r~~~Gl~~~~~~~~~~~~~~~iGQ~~~~~~~~~~~~~~~~~~~~~sgl~~~~SD~v--~~~~~~~~~~~~l~~~~~--  640 (762)
                      .+++.+++.|...-+  ..+.+.+|-..+-.+..+               .+++|-+.  +.+.|+|.....|.....  
T Consensus       214 q~e~~l~~~W~~TgK--t~~~~klGy~~r~fd~~s---------------~rDfsG~~~~v~~~W~pT~kTtl~~~~sR~  276 (381)
T TIGR03014       214 QTEHELRFDWAVTGK--SKLQGSIGYVDREHDHLS---------------QRDFSGVIGRLNADWMVTGKTSLNAAISRE  276 (381)
T ss_pred             EEEEEEEEEEEECCE--EEEEEEEEEEEEECCCCC---------------CCCCCCCCEEEEEEEEECCCEEEEEEEEEE
T ss_conf             326667538986150--799999847873245556---------------445667555778899732558999999764


Q ss_pred             ECCCC---C-EEEEEEEEEEEEC---CCCEEEEEEEEECCC----CCC----CCCCEEEEEEEEEEECCCCEEEEEEEEE
Q ss_conf             61676---6-0668899999964---740899999872267----544----6663258998999972565699999995
Q gi|254780395|r  641 INPKD---W-STRRTDTTIDYTM---GSYEANISYTHIPAY----PLY----AYDARKTIQSRIKFKINDVLSADASLKW  705 (762)
Q Consensus       641 ~d~~~---~-~~~r~~~~~~~~~---~~~~~~~~y~~~~~~----~~~----~~~~~~~~~~~~~~~l~~~w~~~~~~~y  705 (762)
                      ....+   . -..+..+.+....   ++..+.+...|...+    +..    -.|+...+.+++.|++...+.+.+.+.|
T Consensus       277 ~~~~~~~~ssy~~~~~~~l~~~w~~T~kv~~~~~~~y~~rdY~G~~~~~~~~R~D~~~~~~l~~~Y~p~R~l~ls~~~~~  356 (381)
T TIGR03014       277 LANYQTVTSSYYRNRGTSIGPTWQATSKIAVRGRLDYEERDFEGDPLVGPPARSDRTRSGSLSLDWSPVRAVRISAAFQR  356 (381)
T ss_pred             ECCCCCCCCEEEEEEEEEEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEEEEEEE
T ss_conf             03666777406995338842105211239998888998412358645676675432488778999832023888757998


Q ss_pred             CCCCCCCEEEEEEEEECCEEEEEEEE
Q ss_conf             16545412256569964669999999
Q gi|254780395|r  706 NMRAELPSHSIGLAYQNDCATVKIIY  731 (762)
Q Consensus       706 dl~~~~~~~~~Gl~Y~~~Cw~~~l~y  731 (762)
                      .-++.   ..-++.|...-+.+++.+
T Consensus       357 ~~RdS---N~~~~~Yd~n~~~ls~~~  379 (381)
T TIGR03014       357 EKRDS---NSDGFDFDSNSVSVSATL  379 (381)
T ss_pred             EECCC---CCCCCCCCCCEEEEEEEE
T ss_conf             52457---655575123238999999


No 27 
>pfam05096 Glu_cyclase_2 Glutamine cyclotransferase. This family of enzymes EC:2.3.2.5 catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.
Probab=81.34  E-value=2.9  Score=18.78  Aligned_cols=44  Identities=5%  Similarity=-0.043  Sum_probs=24.5

Q ss_pred             EEECCCCEEEEECCE--EEECCCCCEEEEEEE-EEECCCCEEEEEEEE
Q ss_conf             998637879997348--998389878997069-994302559998479
Q gi|254780395|r   89 TFNHKNHRIIASGNI--KLIEPDKRQIHAEYL-DITDDFTNGIIKNLT  133 (762)
Q Consensus        89 ~y~~~~~~~~a~G~v--~~~~~~g~~~~~~~~-~~~~~~~~g~~~~~~  133 (762)
                      .+|.+++.+..+-++  .+ -++|.++.++++ .|+.+.+.|++.+..
T Consensus        72 ~~d~~tg~v~~~~~L~~~~-FgEGiT~~~d~i~qLTWk~~~~fvyd~~  118 (264)
T pfam05096        72 VYDLTQEIFSEKIAFPDTV-FGEGLTVVEDYVYLLTWKDGVAYKYDKA  118 (264)
T ss_pred             EEECCCCCEEEEEECCHHC-CEEEEEEECCEEEEEEECCCEEEEECCC
T ss_conf             9978988699999678000-2000799899999999517827997275


No 28 
>pfam06178 KdgM Oligogalacturonate-specific porin protein (KdgM). This family consists of several bacterial proteins which are homologous to the oligogalacturonate-specific porin protein KdgM from Erwinia chrysanthemi. The phytopathogenic Gram-negative bacteria Erwinia chrysanthemi secretes pectinases, which are able to degrade the pectic polymers of plant cell walls, and uses the degradation products as a carbon source for growth. KdgM is a major outer membrane protein, whose synthesis is strongly induced in the presence of pectic derivatives. KdgM behaves like a voltage-dependent porin that is slightly selective for anions and that exhibits fast block in the presence of trigalacturonate. In contrast to most porins, KdgM seems to be monomeric.
Probab=81.05  E-value=3  Score=18.72  Aligned_cols=75  Identities=15%  Similarity=0.190  Sum_probs=38.6

Q ss_pred             EEEEEEEEEEEEC-CCCEEEEEEEEECC-CCCC---CCCCEEEEEEEEEEECCCCEEEEEEEEECC----CCC-CCEEEE
Q ss_conf             0668899999964-74089999987226-7544---666325899899997256569999999516----545-412256
Q gi|254780395|r  647 STRRTDTTIDYTM-GSYEANISYTHIPA-YPLY---AYDARKTIQSRIKFKINDVLSADASLKWNM----RAE-LPSHSI  716 (762)
Q Consensus       647 ~~~r~~~~~~~~~-~~~~~~~~y~~~~~-~~~~---~~~~~~~~~~~~~~~l~~~w~~~~~~~ydl----~~~-~~~~~~  716 (762)
                      ...|.+..+.|+. +.|.+.....|... +...   +.+...+.++.+.+++.++|.=...+.+=-    .++ ..+.++
T Consensus       133 ~~~r~d~~~~Y~~~d~~~~~ye~~y~~~~~~~~~~d~k~~~~e~n~~~~Yk~~~~W~PyvEvg~v~~~~~~d~rq~RyRV  212 (218)
T pfam06178       133 DQYRIDGYIDYKINDKFSYTYEPTYYKKVNDFKSSDGKKTNWEYNVKLAYKIDKHWTPYVEVGNVDVNNNTDERQTRYRV  212 (218)
T ss_pred             CCEEEEEEEEEECCCCEEEEEEEEEEEECCCEECCCCCCCEEEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEE
T ss_conf             60799899953216755899889999953835604798851688899999828982304999842567888662767998


Q ss_pred             EEEEE
Q ss_conf             56996
Q gi|254780395|r  717 GLAYQ  721 (762)
Q Consensus       717 Gl~Y~  721 (762)
                      ||+|.
T Consensus       213 Gv~Y~  217 (218)
T pfam06178       213 GVQYS  217 (218)
T ss_pred             EEEEE
T ss_conf             88976


No 29 
>COG3117 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.77  E-value=4.2  Score=17.69  Aligned_cols=82  Identities=11%  Similarity=0.221  Sum_probs=41.8

Q ss_pred             EEEEEEEEEEECCCCEEEEEEEE-EEEE---CCEEEEEEEEEEECCCCEEEEECCEEEEC--CC---CCEEEEEEEEEEC
Q ss_conf             79992079997668979999879-9998---99699951899986378799973489983--89---8789970699943
Q gi|254780395|r   52 LDISSDEIVLNSEGSTTTAVGNV-KIEY---KGYHLSARDITFNHKNHRIIASGNIKLIE--PD---KRQIHAEYLDITD  122 (762)
Q Consensus        52 ~~~~ad~~~~~~~~~~~~a~G~v-~i~~---~~~~l~Ad~i~y~~~~~~~~a~G~v~~~~--~~---g~~~~~~~~~~~~  122 (762)
                      ..+.|+++.+-.+.+....+-=+ .+..   ...++.||++++..+.. +...|||+-..  ++   -..+..+++.+++
T Consensus        60 y~l~a~~~eh~~~~~~t~ft~P~l~lf~e~~q~w~v~Ad~a~l~~d~~-l~l~~~vvv~~~t~d~~q~~~l~T~~~~V~l  138 (188)
T COG3117          60 YRLTAQHVEHYSDSSDTHFTAPVLTLFRENRQTWTVQADRAKLTKDGK-LYLLGDVVVVALTPDSGQLQRLTTESAQVNL  138 (188)
T ss_pred             EEEEHHHHHHCCCCCCEEEECCEEEEECCCCCCEEEEHHHHEECCCCE-EEEEECEEEEEECCCCCCCCEEEEEEEEECC
T ss_conf             776323454154566557715359988388762799810202157855-9987120677514776676458710237613


Q ss_pred             CCCEEEEEEEEE
Q ss_conf             025599984799
Q gi|254780395|r  123 DFTNGIIKNLTI  134 (762)
Q Consensus       123 ~~~~g~~~~~~~  134 (762)
                      +.+...-+.+.-
T Consensus       139 ~tqd~~te~~V~  150 (188)
T COG3117         139 KTQDAQTEDPVT  150 (188)
T ss_pred             CCCCEECCCCEE
T ss_conf             310000377566


No 30 
>TIGR01778 TonB-copper TonB-dependent copper receptor; InterPro: IPR010100   This entry represents a family of proteobacterial TonB-dependent outer membrane receptor/transporters which bind and translocate copper ions. Two characterised members of this family exist, outer membrane protein C (OprC) from Pseudomonas aeruginosa  and NosA from Pseudomonas stutzeri, which is responsible for providing copper for the copper-containing N2O reductase ..
Probab=74.45  E-value=2.7  Score=18.99  Aligned_cols=52  Identities=17%  Similarity=0.280  Sum_probs=26.7

Q ss_pred             EEEEEEEEEE-CCCEE-EEEEE--EEEECCCCCCCCCCCCEEEEEEE---EEEEECCCCEEEE
Q ss_conf             0210246872-39759-99987--99731376657788850899966---9999677777999
Q gi|254780395|r  141 TYLTASSAQI-IGQRT-IFDKG--TYTACSSCSKPNSRPPFWIVKSK---RAILNRKTHTIRL  196 (762)
Q Consensus       141 ~~~~~~~~~~-~~~~~-~~~~~--~~T~C~~~~~~~~~~P~W~i~a~---~i~~d~~~~~~~~  196 (762)
                      +...-=.+|- .+.+. |+.+|  ++=+|+ .--   .+|+=+|..+   +|++.+.-+.|.+
T Consensus        34 G~ggDP~~RG~~gsRLNI~~DG~~v~GaCp-nRM---D~Pt~Yi~pEsYd~~TViKGpQtV~y   92 (668)
T TIGR01778        34 GSGGDPVFRGQFGSRLNIVTDGGFVLGACP-NRM---DPPTSYISPESYDKVTVIKGPQTVKY   92 (668)
T ss_pred             CCCCCCEEECCCCCEEEEEECCCEEECCCC-CCC---CCCCCCCCCCCCCEEEEEECCCCEEE
T ss_conf             878871065478634678657866887777-888---87645678751461169856720000


No 31 
>pfam02462 Opacity Opacity family porin protein. Pathogenic Neisseria spp. possess a repertoire of phase-variable Opacity proteins that mediate various pathogen--host cell interactions. These proteins are integral membrane proteins related to other porins.
Probab=72.99  E-value=4.9  Score=17.24  Aligned_cols=38  Identities=16%  Similarity=0.369  Sum_probs=24.6

Q ss_pred             EEEEEEEEECCCCEEEEEEEEECC----CCCC-C--EEEEEEEEE
Q ss_conf             899899997256569999999516----5454-1--225656996
Q gi|254780395|r  684 TIQSRIKFKINDVLSADASLKWNM----RAEL-P--SHSIGLAYQ  721 (762)
Q Consensus       684 ~~~~~~~~~l~~~w~~~~~~~ydl----~~~~-~--~~~~Gl~Y~  721 (762)
                      ++-++..+.|++||.+.+.++|+-    ++.+ .  +..+|+.|.
T Consensus        81 gv~AGVgyditpnltLD~GYRY~~~G~le~tr~~theas~GvRY~  125 (126)
T pfam02462        81 GVLAGVSYKLTPNVDLDTGYRYNRLGKVTVTNVRSGEASAGVRYK  125 (126)
T ss_pred             EEEEEEEEECCCCEEEECCEEEEECCCCCCCEECCCCEEEEEEEE
T ss_conf             887436883278737712528800464134302012136886663


No 32 
>pfam12600 DUF3769 Protein of unknown function (DUF3769). This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 560 and 931 amino acids in length.
Probab=70.58  E-value=5.5  Score=16.89  Aligned_cols=164  Identities=10%  Similarity=0.049  Sum_probs=89.2

Q ss_pred             CEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEECC-CCEEEEECCEEEECCEEEEECCC--EEC
Q ss_conf             502102468723975999987997313766577888508999669999677-77799944289982706863254--001
Q gi|254780395|r  140 ETYLTASSAQIIGQRTIFDKGTYTACSSCSKPNSRPPFWIVKSKRAILNRK-THTIRLEKPYLEIFGNSIFYFPL--IEI  216 (762)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~T~C~~~~~~~~~~P~W~i~a~~i~~d~~-~~~~~~~~a~l~i~~vPv~y~Py--~~~  216 (762)
                      ..+..++.+..+++...-+++.||--      |=.+|--.|+|..++.-+. .+.+..+..+|-+-..  +-+|.  =.+
T Consensus         8 rwRF~a~~i~i~~~~W~a~~~~fTND------pf~ppq~~l~a~~~~~~~~~~~~i~s~~~~Li~d~~--~~iP~~~r~~   79 (403)
T pfam12600         8 RWRFQADRISFDGDGWKAERVRFTND------PFSPPELEIRAESVTAREISDGELKSRRNRLILDQR--LSIPLGRRRL   79 (403)
T ss_pred             EEEEECCEEEECCCCCEEEEEEECCC------CCCCHHEEEECCCEEEEECCCCCEEECCCEEEEECC--CCCCCCCCEE
T ss_conf             89998038898077777715788089------999713699927269998799817962356998343--0135666405


Q ss_pred             CCCCCCCCCCCCCEEEEC--CCCCCCCEECEE-EEECCCCCCEEEEEEECCCCEEEEEEEEEEEECCCCEEEEEEEEECC
Q ss_conf             245554545410005641--333343000103-43024652014554202431011001345530256079999875055
Q gi|254780395|r  217 PDETVVRKTGFLTPLFSS--GEKQRFGVGIPY-YLVISDNSDATFTFSPHPKKGILGEMELRKYFHSGKHTLHAAYMYNN  293 (762)
Q Consensus       217 P~~~~~R~sGfL~P~~~~--s~~~G~~~~~Py-y~~i~~~~D~Tltp~~~s~rG~~l~~eyRy~~~~g~~~~~~~~~~~d  293 (762)
                      .. ..++...-.  .+|+  -.+.|+.|.-.+ -..|.++.-+.++|+++-+|.+..++.=        +      ..++
T Consensus        80 ~~-~~~~~~~~w--~~G~D~~drdG~fi~R~~~~i~~~~~~~l~l~PQfliQRai~g~t~s--------~------~s~~  142 (403)
T pfam12600        80 VI-DREEVENRW--VIGYDNDDRDGLFVGRNLNPIDLTENTSLSLQPQFLIQRAINGETNS--------I------TSPK  142 (403)
T ss_pred             EC-CCCCCCCCE--EEEECCCCCCEEEEECCCCEEECCCCEEEEEEEHHHHHHHHCCCCCC--------C------CCCC
T ss_conf             40-542346745--87422677760799627860730795479980389966765378776--------6------5765


Q ss_pred             CCCCCCCCEEEEEEECCEECCEEEEEEEEEEEEEE
Q ss_conf             56765432011232021000000356678999951
Q gi|254780395|r  294 NVESGEERHQAMLASIAEFEINPIWNLGWHLKKQT  328 (762)
Q Consensus       294 ~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~~S  328 (762)
                      ......-..-..+.++-+..++++|.+..+.++-|
T Consensus       143 v~~~~~~~D~FgL~a~l~g~~~~~w~l~~~~~L~S  177 (403)
T pfam12600       143 VDQDNNLPDLFGLKARLNGNLSPNTSLELDADLSS  177 (403)
T ss_pred             CCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECC
T ss_conf             44467654426799998105089825999752335


No 33 
>pfam00267 Porin_1 Gram-negative porin.
Probab=69.02  E-value=6  Score=16.67  Aligned_cols=81  Identities=19%  Similarity=0.284  Sum_probs=46.7

Q ss_pred             EEEEEEEEECCC-CEEEEEEEEECCCCC----CCCCCEEEEEEEEEEECCCCEEEEEEEEECCCCCCCEEEEEEEEECCE
Q ss_conf             889999996474-089999987226754----466632589989999725656999999951654541225656996466
Q gi|254780395|r  650 RTDTTIDYTMGS-YEANISYTHIPAYPL----YAYDARKTIQSRIKFKINDVLSADASLKWNMRAELPSHSIGLAYQNDC  724 (762)
Q Consensus       650 r~~~~~~~~~~~-~~~~~~y~~~~~~~~----~~~~~~~~~~~~~~~~l~~~w~~~~~~~ydl~~~~~~~~~Gl~Y~~~C  724 (762)
                      ..|+.+.|.... +...+.|.+......    ...+...++.+.+.|.|+++..+.+.+..++.++......++. +++-
T Consensus       247 ~~e~~~~Y~~~~g~~~~~~Y~~~~~~~~~~~~~~~~~~~q~~lg~dY~fSKrt~~Y~~Y~~~~~d~~~~~~~~~~-~dd~  325 (334)
T pfam00267       247 NFEVAAQYQFDFGLRPRVSYAQSKGKDLNGAYGDNDLVKYVDVGATYYFNKNMSAYVDYKINLLDKGDDFAAGIN-TDDA  325 (334)
T ss_pred             EEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCC-CCCE
T ss_conf             699999997424631699999874222356557764589999998999658804999998762566654446777-6888


Q ss_pred             EEEEEEE
Q ss_conf             9999999
Q gi|254780395|r  725 ATVKIIY  731 (762)
Q Consensus       725 w~~~l~y  731 (762)
                      |.++|.|
T Consensus       326 ~~vGlRY  332 (334)
T pfam00267       326 VAVGLVY  332 (334)
T ss_pred             EEEEEEE
T ss_conf             9998088


No 34 
>PRK10554 outer membrane porin protein C; Provisional
Probab=67.37  E-value=6.4  Score=16.45  Aligned_cols=85  Identities=14%  Similarity=0.257  Sum_probs=51.7

Q ss_pred             EEEEEEEEEEEECCC-CEEEEEEEEECCCCCC--------CCCCEEEEEEEEEEECCCCEEEEEEEEECCCCCC-CEEEE
Q ss_conf             066889999996474-0899999872267544--------6663258998999972565699999995165454-12256
Q gi|254780395|r  647 STRRTDTTIDYTMGS-YEANISYTHIPAYPLY--------AYDARKTIQSRIKFKINDVLSADASLKWNMRAEL-PSHSI  716 (762)
Q Consensus       647 ~~~r~~~~~~~~~~~-~~~~~~y~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~w~~~~~~~ydl~~~~-~~~~~  716 (762)
                      +..-.|+.+.|+++. ++.++.|.+-+.....        ..+..+.+.+++.|.+++|.+....++.||-++- .....
T Consensus       278 k~~~~E~~a~Y~fd~glrp~~~Y~~~~~~d~~~~~~~~~~~~d~~~~~~iga~Y~FnkN~~~y~~Yk~NllD~~~~~~~~  357 (373)
T PRK10554        278 KAQNFEVVAQYQFDFGLRPSVAYLQSKGKDLGNIYGRNYGDQDILKYVDVGATYYFNKNMSTYVDYKINLLDDNDFTRDA  357 (373)
T ss_pred             CCCCEEEEEEEEECCCCCEEEEEEHHHCCCCCCCCCCCCCCCCHHHEEEEEEEEEECCCEEEEEEEEEECCCCCCCCCCC
T ss_conf             23337899997623441101001010011123455566573000023897679997787216888875136765310003


Q ss_pred             EEEEECCEEEEEEEEE
Q ss_conf             5699646699999999
Q gi|254780395|r  717 GLAYQNDCATVKIIYK  732 (762)
Q Consensus       717 Gl~Y~~~Cw~~~l~y~  732 (762)
                      |+. .++-+.++|.|+
T Consensus       358 ~~~-~DD~~alGlrY~  372 (373)
T PRK10554        358 GIN-TDDIVALGLVYQ  372 (373)
T ss_pred             CCC-CCCEEEEEEEEE
T ss_conf             677-677699962881


No 35 
>PRK10159 outer membrane phosphoporin protein E; Provisional
Probab=66.06  E-value=6.8  Score=16.29  Aligned_cols=80  Identities=15%  Similarity=0.198  Sum_probs=49.5

Q ss_pred             EEEEEEEEEECCC-CEEEEEEEEECCCCCC---CCCCEEEEEEEEEEECCCCEEEEEEEEECCCCCCCEEEEEEEEECCE
Q ss_conf             6889999996474-0899999872267544---66632589989999725656999999951654541225656996466
Q gi|254780395|r  649 RRTDTTIDYTMGS-YEANISYTHIPAYPLY---AYDARKTIQSRIKFKINDVLSADASLKWNMRAELPSHSIGLAYQNDC  724 (762)
Q Consensus       649 ~r~~~~~~~~~~~-~~~~~~y~~~~~~~~~---~~~~~~~~~~~~~~~l~~~w~~~~~~~ydl~~~~~~~~~Gl~Y~~~C  724 (762)
                      ...|+.+.|+.+. ++.+++|.+.+.....   ..+..+.+.+.+.|.+++|......+..++-++-.  .+++. .++-
T Consensus       266 ~~~E~~a~Y~fd~gl~~~~~y~~~~~~d~~~~~~~d~~~~~~~ga~Y~Fnkn~~~y~~Yk~n~ld~~~--~~~~~-~dd~  342 (351)
T PRK10159        266 QNFEAVAQYQFDFGLRPSLGYVLSKGKDIEGIGDEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDN--KLNIN-NDDI  342 (351)
T ss_pred             CCEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEEECCCCEEEEEEEECCCCCCC--CCCCC-CCCE
T ss_conf             33789898731145200322566512345577861322069986799957981589988601557755--56887-6788


Q ss_pred             EEEEEEE
Q ss_conf             9999999
Q gi|254780395|r  725 ATVKIIY  731 (762)
Q Consensus       725 w~~~l~y  731 (762)
                      |.+++.|
T Consensus       343 ~~~GlrY  349 (351)
T PRK10159        343 VAVGMTY  349 (351)
T ss_pred             EEEEEEE
T ss_conf             9996188


No 36 
>PRK09840 catecholate siderophore receptor Fiu; Provisional
Probab=63.43  E-value=7.6  Score=15.96  Aligned_cols=18  Identities=22%  Similarity=0.122  Sum_probs=12.1

Q ss_pred             EEEEEEEEEEEEEEEECC
Q ss_conf             999888998778875125
Q gi|254780395|r  459 LFTPIANIRGDLHYLSFN  476 (762)
Q Consensus       459 ~~tp~~~lr~~~Y~~~~~  476 (762)
                      .++..+++|.+.|..+.+
T Consensus       459 ~l~l~~G~R~d~~~~~~~  476 (760)
T PRK09840        459 DFELNGGIRLDNYHTEYD  476 (760)
T ss_pred             CEEEEEEEEEEEEEECCC
T ss_conf             579999888875430111


No 37 
>PRK10808 outer membrane protein A; Reviewed
Probab=61.57  E-value=8.2  Score=15.75  Aligned_cols=17  Identities=24%  Similarity=0.538  Sum_probs=8.2

Q ss_pred             EECCEEEEEEEEEEEEE
Q ss_conf             00000035667899995
Q gi|254780395|r  311 EFEINPIWNLGWHLKKQ  327 (762)
Q Consensus       311 ~~~l~~~~~~~~~~~~~  327 (762)
                      .+.|+++|.++.++++.
T Consensus       153 eY~lt~~~~~R~eYq~~  169 (347)
T PRK10808        153 EYAITPEWATRLEYQWT  169 (347)
T ss_pred             EEEECCCCEEEEEEEEE
T ss_conf             58806372688889998


No 38 
>pfam12094 DUF3570 Protein of unknown function (DUF3570). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 396 to 444 amino acids in length.
Probab=59.75  E-value=8.8  Score=15.54  Aligned_cols=28  Identities=11%  Similarity=0.190  Sum_probs=20.1

Q ss_pred             EECCCEEEEEEEEEEEECCCCCEEEEEE
Q ss_conf             0046347887888888428860663230
Q gi|254780395|r  561 RIEGGNRTNLGIRYIGSFNNLFTINGVI  588 (762)
Q Consensus       561 Rie~~~r~~~Gl~~~~~~~~~~~~~~~i  588 (762)
                      |+..-.-.++||++.....++..+.+..
T Consensus       345 rLs~f~a~t~Gl~~~~~l~~~~~~~~~~  372 (407)
T pfam12094       345 RLSAFGAYTIGLKFGKKLSGGLEIDLRY  372 (407)
T ss_pred             CHHCCCCEEEEEEEEEEECCCCEEEEEE
T ss_conf             4002766488367999937994898541


No 39 
>pfam04338 DUF481 Protein of unknown function, DUF481. This family includes several proteins of uncharacterized function.
Probab=55.13  E-value=10  Score=15.04  Aligned_cols=41  Identities=20%  Similarity=0.230  Sum_probs=24.0

Q ss_pred             CCCCCCCCCEECCCEEEEEEEEEEEECCCCCEEEEEEEEEEEEC
Q ss_conf             21223574000463478878888884288606632300378841
Q gi|254780395|r  552 TQNRFSGFDRIEGGNRTNLGIRYIGSFNNLFTINGVIGRSIHIL  595 (762)
Q Consensus       552 ~~nrfsG~DRie~~~r~~~Gl~~~~~~~~~~~~~~~iGQ~~~~~  595 (762)
                      ..++|.|+|..   .-+..|+.+.........+.+.+|-.|..+
T Consensus        75 e~D~f~~i~~r---~~~g~G~Gy~~~~~~~~~l~~~~G~~y~~e  115 (210)
T pfam04338        75 ERDRFSGYDYR---ATLGAGLGYRFIDTDKTKLSVEAGPGYRYE  115 (210)
T ss_pred             EECCCCCEEEE---EEECCCEEEEEEECCCEEEEEEECCEEEEE
T ss_conf             98422364589---997140149999689849999966639999


No 40 
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=54.74  E-value=11  Score=15.00  Aligned_cols=106  Identities=13%  Similarity=0.254  Sum_probs=51.0

Q ss_pred             CCEEEEEEEEEEEECCCCEEEEEEEE-EEEECCEEEEEEEEEEECCCCEEE---E-ECCEEEECCCCCEEEEEEEEEECC
Q ss_conf             66079992079997668979999879-999899699951899986378799---9-734899838987899706999430
Q gi|254780395|r   49 HSELDISSDEIVLNSEGSTTTAVGNV-KIEYKGYHLSARDITFNHKNHRII---A-SGNIKLIEPDKRQIHAEYLDITDD  123 (762)
Q Consensus        49 ~~~~~~~ad~~~~~~~~~~~~a~G~v-~i~~~~~~l~Ad~i~y~~~~~~~~---a-~G~v~~~~~~g~~~~~~~~~~~~~  123 (762)
                      +..+.+.+|....-++.-.=...|+- .-.+|.....||+++..-..++-.   + .++++|.+.+|+.|.. .  +|+.
T Consensus        58 ~ttL~L~~DGtfvl~~~YlG~~~g~~~F~e~GrW~rtadklvLt~s~gek~yfr~~g~~L~mLD~~G~pI~S-~--lNY~  134 (234)
T PRK10523         58 DTSLFLEKDGTWVMNERYLGAREGPSSFASYGTWARTADKLVLTDSKGEKSYYRAKGDALEMLDREGNPIES-Q--LNYT  134 (234)
T ss_pred             EEEEEECCCCCEEEEEEEECCCCCCCCHHHCCEEEECCCEEEEECCCCCEEEEEECCCEEEEECCCCCCCCC-C--CCCE
T ss_conf             358998689878977787045478863322460363288589747998740135628804671568980214-7--8862


Q ss_pred             CCEEEEEEEEEEEECCCEEEEEEEEEECCCEEEE-EEEEEEECCCCC
Q ss_conf             2559998479997067502102468723975999-987997313766
Q gi|254780395|r  124 FTNGIIKNLTIKIPADETYLTASSAQIIGQRTIF-DKGTYTACSSCS  169 (762)
Q Consensus       124 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~T~C~~~~  169 (762)
                      +..  +.   ..++       ..-....|....+ +-++||-|.-+.
T Consensus       135 L~~--v~---~~lp-------~tp~~l~G~y~YmADAAtFtdCaTGk  169 (234)
T PRK10523        135 LEP--VQ---QSLP-------KTPMPLRGMYFYMADAATFTDCATGK  169 (234)
T ss_pred             EEE--CC---CCCC-------CCCCCCCEEEEEECCCCEEEECCCCC
T ss_conf             202--23---5678-------88741112577505772256747898


No 41 
>pfam05326 SVA Seminal vesicle autoantigen (SVA). This family consists of seminal vesicle autoantigen and prolactin-inducible (PIP) proteins. Seminal vesicle autoantigen (SVA) is specifically present in the seminal plasma of mice. This 19-kDa secretory glycoprotein suppresses the motility of spermatozoa by interacting with phospholipid. PIP, has several known functions. In saliva, this protein plays a role in host defence by binding to microorganisms such as Streptococcus. PIP is an aspartyl proteinase and it acts as a factor capable of suppressing T-cell apoptosis through its interaction with CD4.
Probab=52.80  E-value=11  Score=14.91  Aligned_cols=27  Identities=30%  Similarity=0.627  Sum_probs=19.2

Q ss_pred             EEEEEEECCCCCCCCCCCCEEEEEEEEEE
Q ss_conf             98799731376657788850899966999
Q gi|254780395|r  158 DKGTYTACSSCSKPNSRPPFWIVKSKRAI  186 (762)
Q Consensus       158 ~~~~~T~C~~~~~~~~~~P~W~i~a~~i~  186 (762)
                      -+..||+| .|+++|. .=.|.|.+++-.
T Consensus        80 ~n~~yT~C-LC~~~~~-~FfWdi~v~~t~  106 (124)
T pfam05326        80 FNYKYTAC-LCNDYPN-TFFWDIQVNRTV  106 (124)
T ss_pred             CCEEEEEE-ECCCCCC-CEEEEEEECCEE
T ss_conf             22266138-3279950-258999977479


No 42 
>pfam11751 DUF3308 Protein of unknown function (DUF3308). Some members of this family of bacterial proteins are annotated as being one of the several TonB-dependent siderophore receptors, but this could not be confirmed.
Probab=49.93  E-value=13  Score=14.50  Aligned_cols=73  Identities=16%  Similarity=0.244  Sum_probs=31.9

Q ss_pred             EEEEECCCCEEEEEEEEECCCCCEEEEEEEEEEEECC-CCEEEEEEEEECCCCCCCCCCEEEEEEEEEEECCCCEEEEEE
Q ss_conf             9988436777999999861676606688999999647-408999998722675446663258998999972565699999
Q gi|254780395|r  624 AVRLSLSPKITFSTQTLINPKDWSTRRTDTTIDYTMG-SYEANISYTHIPAYPLYAYDARKTIQSRIKFKINDVLSADAS  702 (762)
Q Consensus       624 ~~~~~~~~~~~l~~~~~~d~~~~~~~r~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~~~~~  702 (762)
                      ...+.+.+.+.+.-.+.+-.........++++.+... ++.+.++||..           ..+.+.+.++++++|.+...
T Consensus       184 gy~~~l~~~~~i~Ps~l~~~~~~~~~~~d~~~~~~~~~~~~~G~~YR~~-----------~ai~~~~G~~~~~~~~~gYs  252 (274)
T pfam11751       184 GYVFDLNEELKLKPSVLYKYQEGAPLSLDLNANLLYNDKFWLGASYRNN-----------DAISALVGFNINDNLRIGYS  252 (274)
T ss_pred             EEEEECCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECEEEEEEEECCC-----------CCEEEEEEEEECCCEEEEEE
T ss_conf             8999868982899999999975997128778999990339999998489-----------95999996998896999999


Q ss_pred             EEECC
Q ss_conf             99516
Q gi|254780395|r  703 LKWNM  707 (762)
Q Consensus       703 ~~ydl  707 (762)
                      +.+.+
T Consensus       253 Yd~~~  257 (274)
T pfam11751       253 YDYTT  257 (274)
T ss_pred             EEEEC
T ss_conf             97024


No 43 
>PRK04922 tolB translocation protein TolB; Provisional
Probab=48.17  E-value=11  Score=14.98  Aligned_cols=25  Identities=24%  Similarity=0.385  Sum_probs=15.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9533102476789999999987632
Q gi|254780395|r    1 MRYNYRHLIGATTFFLAFNIITPQG   25 (762)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~   25 (762)
                      ||...|-|....+|++.+..++.+|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~a~~a~a   25 (439)
T PRK04922          1 MKKPLRWLAALTALLLPLSALAQQQ   25 (439)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9616899999999999877886168


No 44 
>PRK11433 putative xanthine dehydrogenase iron-sulfur-binding subunit; Provisional
Probab=45.85  E-value=15  Score=14.09  Aligned_cols=19  Identities=21%  Similarity=0.182  Sum_probs=10.2

Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q ss_conf             9533102476789999999
Q gi|254780395|r    1 MRYNYRHLIGATTFFLAFN   19 (762)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~   19 (762)
                      ++.++|.++..+...++..
T Consensus        10 ~~~srR~~~~~~~~~~a~~   28 (217)
T PRK11433         10 LKLTRRDLLIASAATAATA   28 (217)
T ss_pred             CCEEHHHHHHHHHHHHHHH
T ss_conf             4502999999999999987


No 45 
>PRK10002 outer membrane protein F; Provisional
Probab=45.80  E-value=15  Score=14.08  Aligned_cols=82  Identities=18%  Similarity=0.231  Sum_probs=53.8

Q ss_pred             EEEEEEEEEEEECCC-CEEEEEEEEECCCCCCC---CCCEEEEEEEEEEECCCCEEEEEEEEECCCCCCCEEEEEEEEEC
Q ss_conf             066889999996474-08999998722675446---66325899899997256569999999516545412256569964
Q gi|254780395|r  647 STRRTDTTIDYTMGS-YEANISYTHIPAYPLYA---YDARKTIQSRIKFKINDVLSADASLKWNMRAELPSHSIGLAYQN  722 (762)
Q Consensus       647 ~~~r~~~~~~~~~~~-~~~~~~y~~~~~~~~~~---~~~~~~~~~~~~~~l~~~w~~~~~~~ydl~~~~~~~~~Gl~Y~~  722 (762)
                      +....|+.+.|+++. ++..+.|.+.+......   .+..+.+.+.+.|.+++|.+....+..++-++-.  .+|+. .+
T Consensus       275 k~~~~El~a~Y~fd~gl~p~~~Y~~~~~~d~~~~~~~d~~~~~~lga~Y~FnkN~~ty~~Yk~NllD~~~--~~~~~-~D  351 (362)
T PRK10002        275 KTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDN--KLGVG-SD  351 (362)
T ss_pred             CCCCEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEEECCCEEEEEEEEHHCCCCCC--CCCCC-CC
T ss_conf             1212679889961453112456776422334566765100059987599955870268766000567655--56887-77


Q ss_pred             CEEEEEEEE
Q ss_conf             669999999
Q gi|254780395|r  723 DCATVKIIY  731 (762)
Q Consensus       723 ~Cw~~~l~y  731 (762)
                      +-|.++|.|
T Consensus       352 D~~avGlrY  360 (362)
T PRK10002        352 DTVAVGIVY  360 (362)
T ss_pred             CEEEEEEEE
T ss_conf             879997188


No 46 
>COG4313 Protein involved in meta-pathway of phenol degradation [Energy production and conversion]
Probab=44.74  E-value=15  Score=13.98  Aligned_cols=65  Identities=12%  Similarity=0.160  Sum_probs=29.1

Q ss_pred             EEEEEEEECCCCEEEEEEEEEC--CCCCCC---------EEE--EE--EEEECC-EEEEEEEEEECCC---CCCCCEEEE
Q ss_conf             9989999725656999999951--654541---------225--65--699646-6999999997147---788735999
Q gi|254780395|r  685 IQSRIKFKINDVLSADASLKWN--MRAELP---------SHS--IG--LAYQND-CATVKIIYKNESP---NIHGYKIQA  745 (762)
Q Consensus       685 ~~~~~~~~l~~~w~~~~~~~yd--l~~~~~---------~~~--~G--l~Y~~~-Cw~~~l~y~r~~~---~~~~~~i~~  745 (762)
                      .+.++++.|+++|.+.....|-  +++++.         .+.  +|  +-|..+ -|.+.+.|.++..   +..++.+++
T Consensus       219 ~d~s~s~~i~~~~~vGl~GY~lqQitdDr~~g~~~~g~R~rvfAiGPav~y~~~~~~~l~l~~y~Ef~arNR~eG~~~~l  298 (304)
T COG4313         219 ADYSASYAITEHWRVGLGGYYLQQITDDRGNGATVPGFRERVFAIGPAVMYKFDFKGYLFLNWYKEFGARNRPEGDQLWL  298 (304)
T ss_pred             EEEHHHHCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCHHEEEEECCEEEECCCCCCEEEEEHHHHHCCCCCCCCCEEEE
T ss_conf             22212224478869841147888703666687425785010577566336614776469986223325345786654888


Q ss_pred             EEEE
Q ss_conf             9997
Q gi|254780395|r  746 RLSL  749 (762)
Q Consensus       746 ~~~L  749 (762)
                      ++.+
T Consensus       299 r~a~  302 (304)
T COG4313         299 RYAI  302 (304)
T ss_pred             EECC
T ss_conf             7514


No 47 
>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane. The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.
Probab=44.34  E-value=15  Score=13.94  Aligned_cols=84  Identities=15%  Similarity=0.148  Sum_probs=47.6

Q ss_pred             CCCCEEEEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEECCC
Q ss_conf             36777999999861676606688999999647408999998722675446663258998999972565699999995165
Q gi|254780395|r  629 LSPKITFSTQTLINPKDWSTRRTDTTIDYTMGSYEANISYTHIPAYPLYAYDARKTIQSRIKFKINDVLSADASLKWNMR  708 (762)
Q Consensus       629 ~~~~~~l~~~~~~d~~~~~~~r~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~~~~~~~ydl~  708 (762)
                      -.+.|.+.+..-||... ...+....+.|..+..-+.+. ..+        ++-+.+.++...+++++|.+.+...|+..
T Consensus       139 g~~g~l~G~~~~fDt~~-~~tk~n~algy~~~~~d~~~~-~~l--------nn~~~~~aSyyhkVn~~~~vga~~~~~~~  208 (274)
T cd07303         139 GYEGWLAGYQMVFETVS-RVTQSNFAVGYKTDYNEFQAH-TNV--------NDGTEFGGSIYHKVNDKLEVGVNLAATAG  208 (274)
T ss_pred             CCCCEEEEEEEEEECCC-CCEEEEEEEECCCCCCCEEEE-EEE--------CCCCEEEEEEEEECCCCEEEEEEEEEECC
T ss_conf             21417876676321115-530588899705686417999-992--------68888889999993677679999998227


Q ss_pred             CCCCEEEEEEEEEC
Q ss_conf             45412256569964
Q gi|254780395|r  709 AELPSHSIGLAYQN  722 (762)
Q Consensus       709 ~~~~~~~~Gl~Y~~  722 (762)
                      .....-.+|-+|.-
T Consensus       209 ~~~~~~~vg~ky~l  222 (274)
T cd07303         209 NSNTRFGIAAKYQV  222 (274)
T ss_pred             CCCCEEEEEEEEEC
T ss_conf             89726998988961


No 48 
>PRK13524 outer membrane receptor FepA; Provisional
Probab=43.40  E-value=16  Score=13.85  Aligned_cols=15  Identities=20%  Similarity=0.135  Sum_probs=9.4

Q ss_pred             EEEEEEEEEEEEEEE
Q ss_conf             998889987788751
Q gi|254780395|r  460 FTPIANIRGDLHYLS  474 (762)
Q Consensus       460 ~tp~~~lr~~~Y~~~  474 (762)
                      ++..+++|.+.|...
T Consensus       446 l~l~~G~Ryd~~~~~  460 (742)
T PRK13524        446 TMLTPGLRFDHHSIV  460 (742)
T ss_pred             EEEECCEEEEEEECC
T ss_conf             265022588732012


No 49 
>pfam11854 DUF3374 Protein of unknown function (DUF3374). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 665 to 712 amino acids in length.
Probab=43.17  E-value=16  Score=13.82  Aligned_cols=25  Identities=4%  Similarity=0.315  Sum_probs=17.3

Q ss_pred             EEEEEEEEEEECCCCEEEEEEEEEC
Q ss_conf             2589989999725656999999951
Q gi|254780395|r  682 RKTIQSRIKFKINDVLSADASLKWN  706 (762)
Q Consensus       682 ~~~~~~~~~~~l~~~w~~~~~~~yd  706 (762)
                      .+.+.+.+.|+++++..+...++|.
T Consensus       609 ~h~l~~~~~Y~lse~~~lrl~y~yE  633 (675)
T pfam11854       609 SHNLKLYADYQLSESMSLRLDYRYE  633 (675)
T ss_pred             EEEEEEEEEEEECCCCEEEEEEEEE
T ss_conf             4688898645516661567888999


No 50 
>pfam11231 DUF3034 Protein of unknown function (DUF3034). This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=42.29  E-value=16  Score=13.73  Aligned_cols=24  Identities=4%  Similarity=0.079  Sum_probs=17.4

Q ss_pred             EEEEEEEEEECCCCEEEEEEEEEC
Q ss_conf             589989999725656999999951
Q gi|254780395|r  683 KTIQSRIKFKINDVLSADASLKWN  706 (762)
Q Consensus       683 ~~~~~~~~~~l~~~w~~~~~~~yd  706 (762)
                      -+...+..+-++++|.+.+.+|.-
T Consensus       182 ~~~E~S~a~ll~~~~avG~EYR~K  205 (257)
T pfam11231       182 LQPEGSVAVLLSRNLAVGVEYRQK  205 (257)
T ss_pred             EEEEEEEEEEECCCEEEEEEEECC
T ss_conf             867148999835864887772028


No 51 
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=42.28  E-value=16  Score=13.73  Aligned_cols=16  Identities=13%  Similarity=0.144  Sum_probs=8.0

Q ss_pred             CCEEEEEEEEEEEECC
Q ss_conf             6347887888888428
Q gi|254780395|r  564 GGNRTNLGIRYIGSFN  579 (762)
Q Consensus       564 ~~~r~~~Gl~~~~~~~  579 (762)
                      .++.+..+++|+....
T Consensus       654 ~~~~~~~~v~yr~~er  669 (818)
T PRK10049        654 TANSASAYVRWYQNER  669 (818)
T ss_pred             CCCCCCEEEEEEECCC
T ss_conf             6311333789887463


No 52 
>PRK10695 hypothetical protein; Provisional
Probab=42.24  E-value=16  Score=13.73  Aligned_cols=41  Identities=12%  Similarity=0.232  Sum_probs=30.4

Q ss_pred             EEEEEEEEEECCCCEEEEEEEEEEEECCE-EEEEEEEEEECC
Q ss_conf             99920799976689799998799998996-999518999863
Q gi|254780395|r   53 DISSDEIVLNSEGSTTTAVGNVKIEYKGY-HLSARDITFNHK   93 (762)
Q Consensus        53 ~~~ad~~~~~~~~~~~~a~G~v~i~~~~~-~l~Ad~i~y~~~   93 (762)
                      -+.-+++.|-...-.+..-+++.+.+... +|.||.+..|..
T Consensus        56 ~l~lp~~~~~~~~C~la~~~~~~l~~~~~w~l~~~~l~lD~a   97 (876)
T PRK10695         56 GLRLPDLRYLVGDCTLAHIDNLSLSWPSRWQLSIGTLTLDSA   97 (876)
T ss_pred             CEECCCEEEEECCCCEEECCCCEECCCCCEEEECCCCCCCHH
T ss_conf             555587488818852588535188256300785030321589


No 53 
>pfam09694 Gcw_chp Bacterial protein of unknown function (Gcw_chp). This entry represents a conserved hypothetical protein about 240 residues in length found so far in Proteobacteria including Shewanella oneidensis and Ralstonia solanacearum, usually as part of a paralogous family. The function is unknown.
Probab=41.28  E-value=17  Score=13.63  Aligned_cols=52  Identities=13%  Similarity=0.189  Sum_probs=37.2

Q ss_pred             EEEEEEEEEEECCC-CEEEEEEEEEC-CCC-----CCCEEEEEEEEEC-CEEEEEEEEEE
Q ss_conf             25899899997256-56999999951-654-----5412256569964-66999999997
Q gi|254780395|r  682 RKTIQSRIKFKIND-VLSADASLKWN-MRA-----ELPSHSIGLAYQN-DCATVKIIYKN  733 (762)
Q Consensus       682 ~~~~~~~~~~~l~~-~w~~~~~~~yd-l~~-----~~~~~~~Gl~Y~~-~Cw~~~l~y~r  733 (762)
                      ...+.+...++|.. .|.+.+...|. ...     +...+.+|+.+.- .-|.++|.|..
T Consensus       137 s~Y~~~~~~~~l~~~~~tl~~h~G~q~~~~~~~~~~Y~Dw~vGvs~~~~gg~~~~laY~d  196 (226)
T pfam09694       137 SGYLDLDAGVDLGLTGVTLNAHVGYQDVRNGFTAYSYTDWKIGLSKALDGGLTLSAAYVD  196 (226)
T ss_pred             CEEEEEEECEECCCCCEEEEEEEEEEECCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEE
T ss_conf             578861444032877669999856680137767787589999898984798899999990


No 54 
>pfam11924 DUF3442 Protein of unknown function (DUF3442). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 334 to 948 amino acids in length.
Probab=38.81  E-value=19  Score=13.38  Aligned_cols=21  Identities=10%  Similarity=0.066  Sum_probs=9.8

Q ss_pred             EEEEEEEECCCCEEEEEEEEE
Q ss_conf             799998843677799999986
Q gi|254780395|r  621 YAAAVRLSLSPKITFSTQTLI  641 (762)
Q Consensus       621 ~v~~~~~~~~~~~~l~~~~~~  641 (762)
                      +-..+.+.|.+.+++....+.
T Consensus       211 ~t~gl~ytP~pllt~~~~~~~  231 (280)
T pfam11924       211 VTLGLNYTPVPLLTVGADYRD  231 (280)
T ss_pred             EEEEEEECCCCCEEEEEEEEE
T ss_conf             799888403687799873680


No 55 
>COG5338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.21  E-value=19  Score=13.32  Aligned_cols=28  Identities=21%  Similarity=0.475  Sum_probs=15.8

Q ss_pred             CCCCEECCCEEEEEEEEEEEECCCCCEEEEEE
Q ss_conf             57400046347887888888428860663230
Q gi|254780395|r  557 SGFDRIEGGNRTNLGIRYIGSFNNLFTINGVI  588 (762)
Q Consensus       557 sG~DRie~~~r~~~Gl~~~~~~~~~~~~~~~i  588 (762)
                      .|++|-.++--+.+|+.    ++-++.++..+
T Consensus       299 ~G~eRSs~~Y~~r~G~~----~D~gEk~~GE~  326 (468)
T COG5338         299 QGYERSSDGYGARVGAE----FDLGEKLRGEV  326 (468)
T ss_pred             CCCCCCCCCCCCCCCEE----ECHHHHHCCCC
T ss_conf             34223444200013246----60004216500


No 56 
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=36.89  E-value=20  Score=13.19  Aligned_cols=41  Identities=5%  Similarity=0.072  Sum_probs=25.4

Q ss_pred             EEEEEEEECCCCEEEEEEEEECCCCCCCEEE--EEEEEECCEE
Q ss_conf             9989999725656999999951654541225--6569964669
Q gi|254780395|r  685 IQSRIKFKINDVLSADASLKWNMRAELPSHS--IGLAYQNDCA  725 (762)
Q Consensus       685 ~~~~~~~~l~~~w~~~~~~~ydl~~~~~~~~--~Gl~Y~~~Cw  725 (762)
                      +...+.++++++|.+.+...+|-..+.....  +-+.|.=+-|
T Consensus      1099 l~a~~eyr~~~~~~~G~~~~~~~s~dY~p~~~~lY~RY~f~~~ 1141 (1158)
T PRK11447       1099 ARALIERRVTSNWFVGTAVDIQQAKDYAPSHALLYVRYSAAGW 1141 (1158)
T ss_pred             EEEEEEEEECCCEEEECEEECCCCCCCCCCCEEEEEEEECCCC
T ss_conf             7788999715867863105015335778351467898963776


No 57 
>PRK09501 potD spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed
Probab=36.60  E-value=19  Score=13.33  Aligned_cols=19  Identities=32%  Similarity=0.457  Sum_probs=13.4

Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q ss_conf             9533102476789999999
Q gi|254780395|r    1 MRYNYRHLIGATTFFLAFN   19 (762)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~   19 (762)
                      ||+-.|+||+++.|.+...
T Consensus         1 ~~~~~~~ll~~~a~~l~~~   19 (348)
T PRK09501          1 MKKWSRHLLAAGALALGMS   19 (348)
T ss_pred             CHHHHHHHHHHHHHHHHCC
T ss_conf             9368999999999997350


No 58 
>pfam04245 NA37 37-kD nucleoid-associated bacterial protein.
Probab=35.64  E-value=14  Score=14.19  Aligned_cols=10  Identities=20%  Similarity=0.009  Sum_probs=3.3

Q ss_pred             CEEEEEEEEE
Q ss_conf             1011001345
Q gi|254780395|r  266 KGILGEMELR  275 (762)
Q Consensus       266 rG~~l~~eyR  275 (762)
                      .|..+-.+|+
T Consensus       103 gG~llf~~Y~  112 (334)
T pfam04245       103 GGHLLFAHYQ  112 (334)
T ss_pred             CCEEEEEEEE
T ss_conf             7289999996


No 59 
>COG3056 Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=35.17  E-value=21  Score=13.01  Aligned_cols=27  Identities=11%  Similarity=0.177  Sum_probs=12.9

Q ss_pred             HHHHHH-HHHHHHHHHHHHHCCCCCCCC
Q ss_conf             024767-899999999876324510025
Q gi|254780395|r    6 RHLIGA-TTFFLAFNIITPQGTPPSNEQ   32 (762)
Q Consensus         6 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~   32 (762)
                      +|++.. .+++++.+++++-+.||..-.
T Consensus        12 k~~t~k~L~~laa~~lLagC~a~~~tl~   39 (204)
T COG3056          12 KNMTKKILFPLAAIFLLAGCAAPPTTLI   39 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             7889999999999999975379975031


No 60 
>PRK00378 nucleoid-associated protein NdpA; Validated
Probab=34.04  E-value=16  Score=13.85  Aligned_cols=13  Identities=15%  Similarity=0.069  Sum_probs=4.8

Q ss_pred             CCCEEEEEEEEEE
Q ss_conf             4310110013455
Q gi|254780395|r  264 PKKGILGEMELRK  276 (762)
Q Consensus       264 s~rG~~l~~eyRy  276 (762)
                      ...|..+-.+|++
T Consensus        98 a~gG~llf~~Y~~  110 (334)
T PRK00378         98 AEGGFLLFCHYQY  110 (334)
T ss_pred             CCCCEEEEEEEEC
T ss_conf             5561899999972


No 61 
>pfam11276 DUF3078 Protein of unknown function (DUF3078). This bacterial family of proteins has no known function.
Probab=33.89  E-value=22  Score=12.87  Aligned_cols=28  Identities=18%  Similarity=0.158  Sum_probs=17.1

Q ss_pred             CCCEEEEEEEEEEECCCCEEEEEEEEEC
Q ss_conf             6632589989999725656999999951
Q gi|254780395|r  679 YDARKTIQSRIKFKINDVLSADASLKWN  706 (762)
Q Consensus       679 ~~~~~~~~~~~~~~l~~~w~~~~~~~yd  706 (762)
                      .+++=++.....+++.++|...+...+-
T Consensus        58 tdD~i~l~S~~G~~~~~~W~yS~~~~f~   85 (92)
T pfam11276        58 TDDRLRLNSLLGYKASSNWYYSALGNFR   85 (92)
T ss_pred             EEEEEEEEEHHHHHHHCCEEEEEEEEEE
T ss_conf             1119999505346410658899999999


No 62 
>PRK11667 hypothetical protein; Provisional
Probab=33.85  E-value=22  Score=12.87  Aligned_cols=23  Identities=17%  Similarity=0.219  Sum_probs=17.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             95331024767899999999876
Q gi|254780395|r    1 MRYNYRHLIGATTFFLAFNIITP   23 (762)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~   23 (762)
                      |+...+|++.|+.+.++++....
T Consensus         1 m~~~~~~~~~~~~l~~~ll~~~a   23 (162)
T PRK11667          1 MMKTIKHLLCCAALAAALISTSA   23 (162)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             91489999999999999999999


No 63 
>smart00869 Autotransporter Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type IV pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different peptidase is used and in some cases no cleavage occurs.
Probab=30.16  E-value=25  Score=12.47  Aligned_cols=84  Identities=13%  Similarity=0.035  Sum_probs=35.5

Q ss_pred             EEEEEEEEEEEECCCCEEEEEEEEEEEEEEEEECCCCCCCCC-CCCCCCEEEEEEEEEEEEEEECCEECCCCCEEEEEEE
Q ss_conf             677756776432167179998889987788751256666665-4456520236898989999831021367632589877
Q gi|254780395|r  442 LSIEADWRKKIIGPLGILFTPIANIRGDLHYLSFNRDLSSDT-ISNNPNFVASKMLTAGLDIRYPIVAVTQKSRHILEGI  520 (762)
Q Consensus       442 ~~~~~~~~~~~~~~~G~~~tp~~~lr~~~Y~~~~~~~~~~~~-~~~~~~~~~r~~~~~~l~~~~p~~~~~~~~~h~LeP~  520 (762)
                      +.+..++.+++.....+.++|.+++....-..+......... ..............+|+.+.+.+.....   ..+.|.
T Consensus       117 ~~~~~~~g~~~~~~~~~~i~P~~~l~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~---~~~~~~  193 (261)
T smart00869      117 YGASLEAGYPFKLGGSLTLTPFAGLAYSYVRQDGFTESGGAFALSVDSQSLDSLSLPLGLRLGYAFALGDG---STLTPY  193 (261)
T ss_pred             EEEEEEECCCCCCCCCEEEEEEEEEEEEEEECCCEEECCCCHHCEECCCCCCEEEEEEEEEEEEEEECCCC---CEEEEE
T ss_conf             99999733012234678999899999999975976771960211321566437999999999989985899---699999


Q ss_pred             EEEEEECC
Q ss_conf             78999437
Q gi|254780395|r  521 AQVYAATD  528 (762)
Q Consensus       521 ~q~~~~~~  528 (762)
                      +.+.+...
T Consensus       194 ~~~~~~~~  201 (261)
T smart00869      194 LSLAYQHD  201 (261)
T ss_pred             EEEEEEEH
T ss_conf             99999943


No 64 
>TIGR03016 pepcterm_hypo_1 uncharacterized protein, PEP-CTERM system associated. Members of this protein family are found predominantly in exopolysaccharide biosynthesis operons marked by the presence of the EpsH-family putative exosortase and presence in the genome of the PEP-CTERM protein sorting signal. Members of this family may be distantly related to the EpsL family modeled in TIGR03014.
Probab=29.76  E-value=26  Score=12.43  Aligned_cols=66  Identities=20%  Similarity=0.292  Sum_probs=37.4

Q ss_pred             EEEEEEEEECCCCEEEEEEEEECC---CC--C----CCEEEEEEEEEC-CEEEEEEEEEE---CCCCC----CCCEEEEE
Q ss_conf             899899997256569999999516---54--5----412256569964-66999999997---14778----87359999
Q gi|254780395|r  684 TIQSRIKFKINDVLSADASLKWNM---RA--E----LPSHSIGLAYQN-DCATVKIIYKN---ESPNI----HGYKIQAR  746 (762)
Q Consensus       684 ~~~~~~~~~l~~~w~~~~~~~ydl---~~--~----~~~~~~Gl~Y~~-~Cw~~~l~y~r---~~~~~----~~~~i~~~  746 (762)
                      -+.+...+.|.+++.+.+...|.-   ..  +    ...-.+|+.|.= .-..+++.|+.   +.+..    .++.|++.
T Consensus       347 ~~~~~~~~~L~~rl~~~~~~~~~~~~~~~~~~~~d~~~~~~~gl~y~l~~~~~~~l~Yry~~rdS~~~~~dy~~N~v~~~  426 (431)
T TIGR03016       347 GGSVLLTHRLSPRLTANLGLTYERNEGSGTNDQETDRTSVSAGLSYQLGENTTGSLTYRYQERDSNFEATDYTENRLMAE  426 (431)
T ss_pred             EEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCCEEEEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCHHHHEEEEE
T ss_conf             10389999965131214899999724377776504699999989999638659999999997047876666455121577


Q ss_pred             EEE
Q ss_conf             997
Q gi|254780395|r  747 LSL  749 (762)
Q Consensus       747 ~~L  749 (762)
                      +++
T Consensus       427 l~~  429 (431)
T TIGR03016       427 VTM  429 (431)
T ss_pred             EEE
T ss_conf             874


No 65 
>TIGR03519 Bac_Flav_fam_1 Bacteroidetes-specific putative membrane protein. This model describes a protein family unique to, and greatly expanded in, the Bacteriodetes. Species in this lineage include several, such as Cytophaga hutchinsonii and Flavobacterium johnsoniae, that exhibit a poorly understood rapid gliding phenotype. Several members of this protein family are found in operons with other genes whose loss leads to a loss a this motility.
Probab=29.35  E-value=26  Score=12.38  Aligned_cols=73  Identities=15%  Similarity=0.189  Sum_probs=27.7

Q ss_pred             EEEEECCCCEEEEEEEEECCCCCEEEEEEEEEEEECC-CCEEEEEEEEECCCCCCCCCCEEEEEEEEEEECCCCEEEEEE
Q ss_conf             9988436777999999861676606688999999647-408999998722675446663258998999972565699999
Q gi|254780395|r  624 AVRLSLSPKITFSTQTLINPKDWSTRRTDTTIDYTMG-SYEANISYTHIPAYPLYAYDARKTIQSRIKFKINDVLSADAS  702 (762)
Q Consensus       624 ~~~~~~~~~~~l~~~~~~d~~~~~~~r~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~~~~~  702 (762)
                      ...+.+.+.+.+.-.+.+-.....-...++++..... .+.+.++||..           ..+.+.+.+++.+++.+...
T Consensus       200 gy~~~l~~~~~i~Ps~l~~~~~~~~~~~d~~~~~~~~~~~~~G~~YR~~-----------~ai~~~~g~~~~~~~~~gys  268 (292)
T TIGR03519       200 GYKFPLNEEIKITPSILYKYQKGAPFQLDLGANALYNDKLWAGAGYRGN-----------DAVIGLVGFNLNKRLSIGYS  268 (292)
T ss_pred             EEEEECCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCEEEEEEEEECC-----------CCEEEEEEEEECCCEEEEEE
T ss_conf             5799548984999999999973897079888999972269999999669-----------95999997997798999999


Q ss_pred             EEECC
Q ss_conf             99516
Q gi|254780395|r  703 LKWNM  707 (762)
Q Consensus       703 ~~ydl  707 (762)
                      +.+.+
T Consensus       269 Yd~~~  273 (292)
T TIGR03519       269 YDFST  273 (292)
T ss_pred             EEEEC
T ss_conf             97023


No 66 
>PRK13874 conjugal transfer protein TrbJ; Provisional
Probab=28.49  E-value=27  Score=12.28  Aligned_cols=28  Identities=18%  Similarity=0.236  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             8999999998763245100255567865
Q gi|254780395|r   12 TTFFLAFNIITPQGTPPSNEQTTTSTPS   39 (762)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~   39 (762)
                      ...+++.++++|...+|++|+....+|.
T Consensus         8 ~~~~~~~~~~~~~~~~pa~A~~~V~Dpt   35 (233)
T PRK13874          8 AAALAAALALSPALATPAHAQWIVYDPT   35 (233)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCEEECCH
T ss_conf             9999999874235888731450246701


No 67 
>COG3637 Opacity protein and related surface antigens [Cell envelope biogenesis, outer membrane]
Probab=25.90  E-value=30  Score=11.98  Aligned_cols=23  Identities=9%  Similarity=0.322  Sum_probs=15.7

Q ss_pred             EEEEEEEEECCCCEEEEEEEEEC
Q ss_conf             89989999725656999999951
Q gi|254780395|r  684 TIQSRIKFKINDVLSADASLKWN  706 (762)
Q Consensus       684 ~~~~~~~~~l~~~w~~~~~~~yd  706 (762)
                      .+.++.++.+++||.+...++|.
T Consensus       148 ~~gAGv~~~~tdnv~vd~~Y~y~  170 (199)
T COG3637         148 AYGAGVQYNPTDNVAIDLGYEYS  170 (199)
T ss_pred             EEEEEEEECCCCCEEEEEEEEEE
T ss_conf             78410798155987998899988


No 68 
>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]
Probab=24.40  E-value=32  Score=11.80  Aligned_cols=24  Identities=17%  Similarity=0.212  Sum_probs=11.1

Q ss_pred             EEEEEEEEECCCCEEEEEEEEECC
Q ss_conf             899899997256569999999516
Q gi|254780395|r  684 TIQSRIKFKINDVLSADASLKWNM  707 (762)
Q Consensus       684 ~~~~~~~~~l~~~w~~~~~~~ydl  707 (762)
                      -+.+++.|++++++.+....-|=+
T Consensus       382 ~~s~G~~Y~~t~n~~vd~g~ay~~  405 (440)
T COG2067         382 WLSLGTTYKFTKNLEVDAGYAYLK  405 (440)
T ss_pred             EEECCCEEECCCCEEEEEEEEEEE
T ss_conf             996664772599838998889998


No 69 
>pfam01389 OmpA_membrane OmpA-like transmembrane domain. The structure of OmpA transmembrane domain shows that it consists of an eight stranded beta barrel. This family includes some other distantly related outer membrane proteins with low scores.
Probab=21.88  E-value=36  Score=11.48  Aligned_cols=51  Identities=16%  Similarity=0.318  Sum_probs=30.4

Q ss_pred             EEEEEEEEECCCCEEEEEEEEE-----CCCC------------CC--CEEEEEEEEE-CCEEEEEEEEEEC
Q ss_conf             8998999972565699999995-----1654------------54--1225656996-4669999999971
Q gi|254780395|r  684 TIQSRIKFKINDVLSADASLKW-----NMRA------------EL--PSHSIGLAYQ-NDCATVKIIYKNE  734 (762)
Q Consensus       684 ~~~~~~~~~l~~~w~~~~~~~y-----dl~~------------~~--~~~~~Gl~Y~-~~Cw~~~l~y~r~  734 (762)
                      ++...+.+||+++|.+.++.-.     |.+.            +-  ....+|++|. .+-|.+++.|++.
T Consensus        78 ~l~~k~~~pl~d~~~ly~K~G~a~~~~d~~~~~~~~~~~~~~d~~~~~~~G~G~eY~it~~~~~r~eYq~~  148 (175)
T pfam01389        78 TLSLKLSYPLTDDLDVYGKVGGALVRADYKFYEDANGKTGNHDTGVSPLFALGVEYAVTPELAVRLEYQYL  148 (175)
T ss_pred             EEEEEEEEEECCCEEEEEEEEEEEEECCCCEECCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEE
T ss_conf             99999888614856799971068996133210256664223567705388888899807582788889992


No 70 
>pfam04234 CopC Copper resistance protein CopC. CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm.
Probab=21.17  E-value=37  Score=11.38  Aligned_cols=35  Identities=17%  Similarity=0.281  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             0247678999999998763245100255567865456
Q gi|254780395|r    6 RHLIGATTFFLAFNIITPQGTPPSNEQTTTSTPSKIK   42 (762)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   42 (762)
                      |.++....+++..+++++.|  -+++.-..+.|+..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A--~AH~~l~~s~P~~ga   36 (120)
T pfam04234         2 RRLLLAAALLALLLLLAGAA--SAHAKLVSSTPAAGA   36 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCCCCC
T ss_conf             77999999999998740321--315442432799949


No 71 
>PRK00022 lolB outer membrane lipoprotein LolB; Provisional
Probab=20.97  E-value=37  Score=11.36  Aligned_cols=20  Identities=20%  Similarity=0.032  Sum_probs=11.0

Q ss_pred             EEEEEEEEEEECCEEEEEEE
Q ss_conf             99998799998996999518
Q gi|254780395|r   68 TTAVGNVKIEYKGYHLSARD   87 (762)
Q Consensus        68 ~~a~G~v~i~~~~~~l~Ad~   87 (762)
                      -.++|.+-|..++....|--
T Consensus        49 w~~~Gkiav~~~~~~~sa~f   68 (203)
T PRK00022         49 YQARGRFAYISPQQRVSGRF   68 (203)
T ss_pred             EEEEEEEEEECCCCEEEEEE
T ss_conf             48846899987885478999


No 72 
>pfam04420 CHD5 CHD5-like protein. Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. In Saccharomyces cerevisiae this protein localizes to the ER and is thought to play a homeostatic role.
Probab=20.82  E-value=37  Score=11.40  Aligned_cols=21  Identities=14%  Similarity=0.079  Sum_probs=16.0

Q ss_pred             EEEECCEEEEECCCEECCCCC
Q ss_conf             899827068632540012455
Q gi|254780395|r  200 YLEIFGNSIFYFPLIEIPDET  220 (762)
Q Consensus       200 ~l~i~~vPv~y~Py~~~P~~~  220 (762)
                      .++....|||++|...+|-|-
T Consensus       114 ~~~y~k~pv~~lp~~~~p~p~  134 (159)
T pfam04420       114 RFWYRKTPVFVLPSGWFPYPV  134 (159)
T ss_pred             HHEECCCEEEECCCCHHHHHH
T ss_conf             630068668980851005788


No 73 
>PRK10301 hypothetical protein; Provisional
Probab=20.76  E-value=38  Score=11.33  Aligned_cols=39  Identities=21%  Similarity=0.112  Sum_probs=23.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             953310247678999999998763245100255567865456
Q gi|254780395|r    1 MRYNYRHLIGATTFFLAFNIITPQGTPPSNEQTTTSTPSKIK   42 (762)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   42 (762)
                      |--+.|+|..+.+++++.++ ++.|  -++++-..+.|+...
T Consensus         1 ~~~~~~~~r~~l~l~~~~l~-~~~A--~AHa~L~~S~Pa~ga   39 (124)
T PRK10301          1 MASTARSLRYALAILTTSLV-TPAV--WAHAHLTHQYPAANA   39 (124)
T ss_pred             CCCHHHHHHHHHHHHHHHHH-CCCC--CCCCCCCCCCCCCCC
T ss_conf             97317889999999999876-5013--005552544799979


No 74 
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=20.68  E-value=38  Score=11.32  Aligned_cols=45  Identities=9%  Similarity=-0.006  Sum_probs=18.3

Q ss_pred             EEECCCCEEEEECCEE--EECCCCCEEEEEEE-EEECCCCEEEEEEEE
Q ss_conf             9986378799973489--98389878997069-994302559998479
Q gi|254780395|r   89 TFNHKNHRIIASGNIK--LIEPDKRQIHAEYL-DITDDFTNGIIKNLT  133 (762)
Q Consensus        89 ~y~~~~~~~~a~G~v~--~~~~~g~~~~~~~~-~~~~~~~~g~~~~~~  133 (762)
                      .+|-.++.+.++-++-  -.-++|.+..++.. .++.+.+.++..++.
T Consensus        72 ~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~  119 (262)
T COG3823          72 VSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDAD  119 (262)
T ss_pred             EEECCCCEEEEEEECCCCCCCCCCEEECCCEEEEEEECCCEEEEECHH
T ss_conf             884367508997406973200235003055589999425604898767


Done!