HHsearch alignment for GI: 254780396 and conserved domain: PRK10770

>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional.
Probab=100.00  E-value=0  Score=314.21  Aligned_cols=299  Identities=14%  Similarity=0.213  Sum_probs=240.0

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEECCHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999984023211348269998867868899999999987303--------5035999999999999999
Q gi|254780396|r   15 LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGELEKIAVQELIVETLK   86 (317)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvA~Vng~~It~~e~~~~~~~~~~~~--------~~~~~~~~~l~~LI~~~l~   86 (317)
T Consensus         3 ~~~~~~~~~~~~~~~~--~a~~~~iD~IvAvVn~~iIl~sdl~~~~~~~~~~~~~~~~~~p~~~~Lr~qvLd~LI~e~Ll   80 (428)
T PRK10770          3 NWKTLLLGIAMIANTS--FAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAQQAGQQLPDDATLRHQILERLIMDQII   80 (428)
T ss_pred             HHHHHHHHHHHHHHHH--HHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             3999999999998475--54055338279999990544999999999999999855899996689999999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             86420012234445668999999973134303567777653112455469999998999999998432035558999864
Q gi|254780396|r   87 KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN  166 (317)
Q Consensus        87 ~~~a~~~~i~v~~~~i~~~i~~~~~~~~~~~~~~~~~l~~~g~t~~~~~~~i~~~l~~~~~~~~~~~~~i~~~~~e~~~~  166 (317)
T Consensus        81 ~Q~A~~~gi~Vsd~evd~~i~~ia~~~~~s~~q~~~~L~~~G~s~~~~r~~ir~ell~~~l~~~~v~~~i~Vs~~Ev~~~  160 (428)
T PRK10770         81 LQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESL  160 (428)
T ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             99999839986999999999999987488799999999976997899999999999999999998650102478999999


Q ss_pred             HHHHHHHC--CC--------------------------------------------------------------------
Q ss_conf             43211100--11--------------------------------------------------------------------
Q gi|254780396|r  167 KQKMKNIT--VR--------------------------------------------------------------------  176 (317)
Q Consensus       167 ~~~~~~~~--~~--------------------------------------------------------------------  176 (317)
T Consensus       161 ~~~~~~~~~~~~e~~l~~Ili~~~~~~~~~~~~~~~~~a~~i~~~i~~G~dF~~lA~~~S~~~~a~~GGdlGw~~~~~lp  240 (428)
T PRK10770        161 AKQIGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARSIVDQARNGADFGKLAIAYSADQQALKGGQMGWGRIQELP  240 (428)
T ss_pred             HHHHHHHCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHCCCCCCCCCCCCCH
T ss_conf             99866422688617899999737888899999999999999999987589989999982657101116864421122130


Q ss_pred             -------------------------------------------CHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH-
Q ss_conf             -------------------------------------------002333221024675444799998643578865223-
Q gi|254780396|r  177 -------------------------------------------EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL-  212 (317)
Q Consensus       177 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  212 (317)
T Consensus       241 ~~f~~a~~~l~~Geis~pi~s~~G~HIikl~d~r~~~~~~~~~e~~~rHILi~~~--~~~~~~~a~~~l~~i~~~i~~g~  318 (428)
T PRK10770        241 GIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGASQNISVTEVHARHILLKPS--PIMTDEQARAKLEQIAADIKSGK  318 (428)
T ss_pred             HHHHHHHHHCCCCCCCCCEECCCCEEEEEEHHHHCCCCCCCHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             7899999716898723536417835999724432566541055576667633788--66575999999999999987675


Q ss_pred             HHHHHHHHHHHCCC-CCCCCCCCCCCCHHHCCHHHHHH-CCCCCCCCCCCEEECCEEEEEEEECCCCC-CCCHHHHHHHH
Q ss_conf             32489999852013-22568746752755613676651-12457880123763894899998223578-84457899999
Q gi|254780396|r  213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLS  289 (317)
Q Consensus       213 ~~~~~~~~~~~~~~-~~~~~g~lg~~~~~~l~~~~~~~-~~~~~G~is~pv~t~~G~hiikv~~~r~~-~~~~~~~~~i~  289 (317)
T Consensus       319 ~~F~~~A~~~S~D~~Sa~~GGdLgw~~~~~~~p~f~~~~~~l~~GeiS~Pv~t~~G~hii~l~~~R~~d~~~~~~r~~~~  398 (428)
T PRK10770        319 TTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQISAPVHSSFGWHLIELLDTRQVDKTDAAQKDRAY  398 (428)
T ss_pred             CCHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCEEEEEEEEEECCCCCCCHHHHHHHH
T ss_conf             57999999862795245428836777845479789999970899991656665870699999840367864255899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             9999999999999999999975477509
Q gi|254780396|r  290 AQNTPTKIEKHEAEYVKKLRSNAIIHYY  317 (317)
Q Consensus       290 ~~l~~~~~~~~~~~~l~~Lr~~A~I~~f  317 (317)
T Consensus       399 ~~l~~~k~~~~~~~wl~~lR~~ayI~I~  426 (428)
T PRK10770        399 RMLFNRKFSEEAATWMQEQRASAYVKIL  426 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHEEEEEC
T ss_conf             9999999999999999999851179740