HHsearch alignment for GI: 254780396 and conserved domain: TIGR02925
>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family; InterPro: IPR014274 Proteins in this entry include EpsD from Methylobacillus sp. 12S and belong to the peptidyl-prolyl cis-trans isomerase family. They are located at loci associated with exopolysaccharide biosynthesis and are encoded near a homologue of EpsH (IPR013426 from INTERPRO)..
Probab=99.70 E-value=4.2e-15 Score=114.42 Aligned_cols=222 Identities=11% Similarity=0.059 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEECCHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999984023211348269998867868899999999987303-----5035999999999999999864200
Q gi|254780396|r 18 TYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK-----INGELEKIAVQELIVETLKKQEIEK 92 (317)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~vvA~Vng~~It~~e~~~~~~~~~~~~-----~~~~~~~~~l~~LI~~~l~~~~a~~ 92 (317)
T Consensus 4 ~~~~ll~~~La~C~~~~~~~~asQVAA~VNG~EIsv~QlNy~l~r~p~~~~~~PEda~~~r~~~Ld~LVdqel~~~kA~E 83 (236)
T TIGR02925 4 VLLVLLVGALAACGEKEAKESASQVAAKVNGKEISVHQLNYALQRIPNLGADSPEDAARARRQVLDRLVDQELVVEKALE 83 (236)
T ss_pred HHHHHHHHHHHCCCCHHCCCCCCCEEEEECCEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78769998751244001027888538888682111889999997144678887021589999999999999999999886
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 12234445668999999973134303567777653112455469999998999999998432035558999864432111
Q gi|254780396|r 93 SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172 (317)
Q Consensus 93 ~~i~v~~~~i~~~i~~~~~~~~~~~~~~~~~l~~~g~t~~~~~~~i~~~l~~~~~~~~~~~~~i~~~~~e~~~~~~~~~~ 172 (317)
T Consensus 84 ~KLDRsP~V~~A~------------------------------~~A~r~IlArAYl~~~~g~~~~Ps~~e~~~Y~~~HP~ 133 (236)
T TIGR02925 84 EKLDRSPDVVMAL------------------------------EAAKREILARAYLEQLVGAQSKPSPEEIKEYFQEHPE 133 (236)
T ss_pred HCCCCCHHHHHHH------------------------------HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 0046785789999------------------------------9988989999999987447988788889888610056
Q ss_pred HCCCCHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCHHHHHHC-
Q ss_conf 0011002333221024-67544479999864357886522332489999852013225687467527556136766511-
Q gi|254780396|r 173 ITVREYLIRTVLFSIP-DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL- 250 (317)
Q Consensus 173 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lg~~~~~~l~~~~~~~~- 250 (317)
T Consensus 134 LFA~RK~Y~lqEi~~pG~~~~~~d-----~Lr~~~~~~k~L~d~~~WLKa~~~~f~~----~~~~r~AEQ~P~~~L~~l~ 204 (236)
T TIGR02925 134 LFAERKLYNLQEIALPGPDKELLD-----ELRAMVENSKPLEDILAWLKAKNVKFKA----SSAARSAEQLPAEILAKLA 204 (236)
T ss_pred HHHHCCCCCHHEEEECCCCCHHHH-----HHHHHHHCCCCHHHHHHHHHCCCCCCCC----CCCCCCHHCCCHHHHHHHH
T ss_conf 676066311111441597820358-----9999975388877899997048983023----5323660114656657844
Q ss_pred CCCCCCCCCCEEECCEE-EEEEEECCCCCC
Q ss_conf 24578801237638948-999982235788
Q gi|254780396|r 251 KKSQNNTTNPYVTQKGV-EYIAICDKRDLG 279 (317)
Q Consensus 251 ~~~~G~is~pv~t~~G~-hiikv~~~r~~~ 279 (317)
T Consensus 205 ~lk~G~-~l~~~~p~~~s~~~~~~~aq~~P 233 (236)
T TIGR02925 205 KLKDGA-VLVVQGPNNVSLILRVADAQAAP 233 (236)
T ss_pred CCCCCC-EEEEECCCCEEEEEEEECCCCCC
T ss_conf 289782-48887788737987740000265