HHsearch alignment for GI: 254780396 and conserved domain: TIGR02933
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM; InterPro: IPR014282 Members of this entry are found in a subset of nitrogen-fixing bacteria and are annotated as nitrogen fixation protein NifM. NifM is homologous to peptidyl-prolyl cis-trans isomerases and appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase..
Probab=99.81 E-value=2.4e-18 Score=134.94 Aligned_cols=228 Identities=12% Similarity=0.103 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999998642001223444566899999997313430356777765311245546999999899999999843203555
Q gi|254780396|r 80 LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159 (317)
Q Consensus 80 LI~~~l~~~~a~~~~i~v~~~~i~~~i~~~~~~~~~~~~~~~~~l~~~g~t~~~~~~~i~~~l~~~~~~~~~~~~~i~~~ 159 (317)
T Consensus 35 ~~~E~Av~~~~~~~~~~i~p~~le~~Wahiasrye-s~~~L~~~L~~~~l~A~~~~a~l~h~~~l~~~L~~v~~q~p~p~ 113 (270)
T TIGR02933 35 RHIEQAVVEAADESAVDIPPSLLEEVWAHIASRYE-SAQALAAELDEQELAAAEREALLAHHVRLEAQLASVAEQAPQPD 113 (270)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 89999999736522464788889999999873156-77899987133048930179999999999999999970589996
Q ss_pred HHHHHHHHHHHHHHCCCC--HHHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 899986443211100110--0233322102467--544479999864357886522332489999852013225687467
Q gi|254780396|r 160 EMEIPANKQKMKNITVRE--YLIRTVLFSIPDN--KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235 (317)
Q Consensus 160 ~~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lg 235 (317)
T Consensus 114 ~a~V~~wY~~Ha~~F~rPeQrltrHLLlTv~edfPen~~eAv~~ri~al~rrL~~~~~~FA~~A~rhS~CPtAl~gG~LG 193 (270)
T TIGR02933 114 DAEVEAWYRRHAEQFVRPEQRLTRHLLLTVNEDFPENDREAVRERILALLRRLRAKRAAFAELAERHSHCPTALEGGLLG 193 (270)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHCCCCEE
T ss_conf 03588998886740577134422233201158779888178999999999874688567899987627786202278204
Q ss_pred CCCHHHCCHHHHH-HCCCCCCCCCCCEEECCEEEEEEEECCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5275561367665-112457880123763894899998223578844--578999999999999999999999999
Q gi|254780396|r 236 YLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKL 308 (317)
Q Consensus 236 ~~~~~~l~~~~~~-~~~~~~G~is~pv~t~~G~hiikv~~~r~~~~~--~~~~~~i~~~l~~~~~~~~~~~~l~~L 308 (317)
T Consensus 194 Wv~RG~LYp~Ld~aLF~L~~G~LS~~~es~lGwHlL~CE~irp~~pl~~~~aL~~~rd~L~~r~q~~~QRqWL~qL 269 (270)
T TIGR02933 194 WVSRGLLYPQLDAALFQLAEGELSAPIESELGWHLLLCEAIRPARPLEKEEALERARDRLLLRQQKEYQRQWLVQL 269 (270)
T ss_pred EECCCCCCHHHHHHHHHHHCCCCCCCHHCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 4307766600789999986068886011101467787530486567898789899999999999888677998621