HHsearch alignment for GI: 254780396 and conserved domain: TIGR02933

>TIGR02933 nifM_nitrog nitrogen fixation protein NifM; InterPro: IPR014282 Members of this entry are found in a subset of nitrogen-fixing bacteria and are annotated as nitrogen fixation protein NifM. NifM is homologous to peptidyl-prolyl cis-trans isomerases and appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase..
Probab=99.81  E-value=2.4e-18  Score=134.94  Aligned_cols=228  Identities=12%  Similarity=0.103  Sum_probs=191.4

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             99999998642001223444566899999997313430356777765311245546999999899999999843203555
Q gi|254780396|r   80 LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL  159 (317)
Q Consensus        80 LI~~~l~~~~a~~~~i~v~~~~i~~~i~~~~~~~~~~~~~~~~~l~~~g~t~~~~~~~i~~~l~~~~~~~~~~~~~i~~~  159 (317)
T Consensus        35 ~~~E~Av~~~~~~~~~~i~p~~le~~Wahiasrye-s~~~L~~~L~~~~l~A~~~~a~l~h~~~l~~~L~~v~~q~p~p~  113 (270)
T TIGR02933        35 RHIEQAVVEAADESAVDIPPSLLEEVWAHIASRYE-SAQALAAELDEQELAAAEREALLAHHVRLEAQLASVAEQAPQPD  113 (270)
T ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             89999999736522464788889999999873156-77899987133048930179999999999999999970589996


Q ss_pred             HHHHHHHHHHHHHHCCCC--HHHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             899986443211100110--0233322102467--544479999864357886522332489999852013225687467
Q gi|254780396|r  160 EMEIPANKQKMKNITVRE--YLIRTVLFSIPDN--KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ  235 (317)
Q Consensus       160 ~~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lg  235 (317)
T Consensus       114 ~a~V~~wY~~Ha~~F~rPeQrltrHLLlTv~edfPen~~eAv~~ri~al~rrL~~~~~~FA~~A~rhS~CPtAl~gG~LG  193 (270)
T TIGR02933       114 DAEVEAWYRRHAEQFVRPEQRLTRHLLLTVNEDFPENDREAVRERILALLRRLRAKRAAFAELAERHSHCPTALEGGLLG  193 (270)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHCCCCEE
T ss_conf             03588998886740577134422233201158779888178999999999874688567899987627786202278204


Q ss_pred             CCCHHHCCHHHHH-HCCCCCCCCCCCEEECCEEEEEEEECCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5275561367665-112457880123763894899998223578844--578999999999999999999999999
Q gi|254780396|r  236 YLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKL  308 (317)
Q Consensus       236 ~~~~~~l~~~~~~-~~~~~~G~is~pv~t~~G~hiikv~~~r~~~~~--~~~~~~i~~~l~~~~~~~~~~~~l~~L  308 (317)
T Consensus       194 Wv~RG~LYp~Ld~aLF~L~~G~LS~~~es~lGwHlL~CE~irp~~pl~~~~aL~~~rd~L~~r~q~~~QRqWL~qL  269 (270)
T TIGR02933       194 WVSRGLLYPQLDAALFQLAEGELSAPIESELGWHLLLCEAIRPARPLEKEEALERARDRLLLRQQKEYQRQWLVQL  269 (270)
T ss_pred             EECCCCCCHHHHHHHHHHHCCCCCCCHHCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             4307766600789999986068886011101467787530486567898789899999999999888677998621