HHsearch alignment for GI: 254780396 and conserved domain: pfam09312
>pfam09312 SurA_N SurA N-terminal domain. This domain is found at the N-terminus of the chaperone SurA. It is a helical domain of unknown function. The C-terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment.
Probab=99.82 E-value=3.2e-19 Score=140.50 Aligned_cols=108 Identities=20% Similarity=0.397 Sum_probs=99.9
Q ss_pred CCEEEEECCEECCHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 8269998867868899999999987303--------50359999999999999998642001223444566899999997
Q gi|254780396|r 40 SRIRTTINGEVITDGDISKRIALLKLQK--------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111 (317)
Q Consensus 40 ~~vvA~Vng~~It~~e~~~~~~~~~~~~--------~~~~~~~~~l~~LI~~~l~~~~a~~~~i~v~~~~i~~~i~~~~~ 111 (317)
T Consensus 2 D~IvAiVN~~iIt~~el~~~~~~~~~~~~~~~~~~~~~~~l~~~vL~~LI~~~L~~q~A~~~gi~vsd~evd~~i~~ia~ 81 (118)
T pfam09312 2 DRIVAVVNDGVILQSELDRRVKTVKRQLAKQGTQLPPDAVLRRQVLERLILERIQLQMAERTGIRVDDEQLNQAIARIAQ 81 (118)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 72688889926489999999999999998658999928999999999999999999999985999989999999999998
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 313430356777765311245546999999899999
Q gi|254780396|r 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147 (317)
Q Consensus 112 ~~~~~~~~~~~~l~~~g~t~~~~~~~i~~~l~~~~~ 147 (317)
T Consensus 82 ~n~~s~~~~~~~L~~~G~~~~~~r~~ir~qil~~kl 117 (118)
T pfam09312 82 QNNMTLDQLRAALAADGLSYDEFREQIRKEMLISRL 117 (118)
T ss_pred HCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 859899999999998499999999999999999970