HHsearch alignment for GI: 254780396 and conserved domain: pfam09312

>pfam09312 SurA_N SurA N-terminal domain. This domain is found at the N-terminus of the chaperone SurA. It is a helical domain of unknown function. The C-terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment.
Probab=99.82  E-value=3.2e-19  Score=140.50  Aligned_cols=108  Identities=20%  Similarity=0.397  Sum_probs=99.9

Q ss_pred             CCEEEEECCEECCHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf             8269998867868899999999987303--------50359999999999999998642001223444566899999997
Q gi|254780396|r   40 SRIRTTINGEVITDGDISKRIALLKLQK--------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR  111 (317)
Q Consensus        40 ~~vvA~Vng~~It~~e~~~~~~~~~~~~--------~~~~~~~~~l~~LI~~~l~~~~a~~~~i~v~~~~i~~~i~~~~~  111 (317)
T Consensus         2 D~IvAiVN~~iIt~~el~~~~~~~~~~~~~~~~~~~~~~~l~~~vL~~LI~~~L~~q~A~~~gi~vsd~evd~~i~~ia~   81 (118)
T pfam09312         2 DRIVAVVNDGVILQSELDRRVKTVKRQLAKQGTQLPPDAVLRRQVLERLILERIQLQMAERTGIRVDDEQLNQAIARIAQ   81 (118)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             72688889926489999999999999998658999928999999999999999999999985999989999999999998


Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             313430356777765311245546999999899999
Q gi|254780396|r  112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV  147 (317)
Q Consensus       112 ~~~~~~~~~~~~l~~~g~t~~~~~~~i~~~l~~~~~  147 (317)
T Consensus        82 ~n~~s~~~~~~~L~~~G~~~~~~r~~ir~qil~~kl  117 (118)
T pfam09312        82 QNNMTLDQLRAALAADGLSYDEFREQIRKEMLISRL  117 (118)
T ss_pred             HCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             859899999999998499999999999999999970