Query gi|254780396|ref|YP_003064809.1| peptidyl-prolyl cis-trans isomerase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 317
No_of_seqs 145 out of 3262
Neff 10.2
Searched_HMMs 33803
Date Wed Jun 1 12:57:40 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780396.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2itk_A Peptidyl-prolyl CIS-tr 99.5 7.1E-17 2.1E-21 125.2 -5.1 162 113-274 3-167 (167)
2 >1j6y_A Peptidyl-prolyl CIS-tr 99.5 3.9E-16 1.2E-20 120.5 -3.2 135 132-274 3-139 (139)
3 >3gpk_A PPIC-type peptidyl-pro 99.5 1.6E-13 4.6E-18 104.1 6.8 104 174-280 4-108 (112)
4 >2pv1_A Chaperone SURA; surviV 99.4 1.7E-13 5E-18 103.8 6.7 100 177-276 2-103 (103)
5 >1m5y_A SurviVal protein, surv 99.4 3E-13 8.7E-18 102.3 7.0 105 175-279 3-109 (110)
6 >1m5y_A SurviVal protein, surv 99.4 3.1E-13 9.1E-18 102.2 7.0 103 175-279 4-109 (111)
7 >2jzv_A Foldase protein PRSA; 99.4 4.5E-13 1.3E-17 101.2 5.9 101 174-274 4-111 (111)
8 >1yw5_A Peptidyl prolyl CIS/tr 99.3 3.6E-12 1.1E-16 95.4 6.9 79 196-274 36-116 (116)
9 >1jns_A Peptidyl-prolyl CIS-tr 99.3 6.9E-12 2E-16 93.6 6.6 76 201-276 16-92 (92)
10 >2kgj_A Peptidyl-prolyl CIS-tr 99.2 9.2E-12 2.7E-16 92.8 5.5 94 176-280 4-98 (102)
11 >1zk6_A Foldase protein PRSA; 99.1 1.1E-10 3.2E-15 86.1 5.5 89 176-275 3-93 (93)
12 >1eq3_A Peptidyl-prolyl CIS/tr 99.0 3.3E-10 9.8E-15 83.0 5.1 72 204-276 18-96 (96)
13 >1m5y_A SurviVal protein, surv 98.9 2.4E-09 7E-14 77.6 7.0 62 37-98 3-72 (78)
14 >1m5y_A SurviVal protein, surv 98.7 4.8E-08 1.4E-12 69.3 7.6 72 97-168 1-72 (93)
15 >2nsa_A Trigger factor, TF; ch 98.1 4.7E-05 1.4E-09 50.4 11.0 103 47-149 41-161 (170)
16 >1zxj_A MPN555, hypothetical p 92.8 0.58 1.7E-05 24.5 10.2 93 73-177 82-175 (218)
17 >1t11_A Trigger factor, TF; he 91.0 0.94 2.8E-05 23.2 8.1 123 48-177 12-158 (166)
18 >3gbg_A TCP pilus virulence re 42.2 19 0.00055 14.9 6.5 43 107-149 189-231 (276)
19 >2voz_A FUTA2, periplasmic iro 32.4 27 0.00079 14.0 2.2 32 83-114 48-79 (346)
20 >1tq4_A IIGP1, interferon-indu 31.4 24 0.0007 14.3 1.6 45 99-143 10-54 (117)
21 >2qac_A Myosin A tail domain i 24.5 32 0.00095 13.4 1.3 39 86-124 27-65 (67)
No 1
>>2itk_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; PIN1, isomerase, WW domain; HET: D11 NAL PE4; 1.45A {Homo sapiens} (A:)
Probab=99.53 E-value=7.1e-17 Score=125.20 Aligned_cols=162 Identities=9% Similarity=-0.006 Sum_probs=112.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
Q ss_conf 13430356777765311245546999999899999999843203555899986443211100110023332210246754
Q gi|254780396|r 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192 (317)
Q Consensus 113 ~~~~~~~~~~~l~~~g~t~~~~~~~i~~~l~~~~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (317)
+++..+.+...+...+++...+++.++..+.+..+........+..+...+...+..........+...+..+..+....
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (167)
T 2itk_A 3 HGMADEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKI 82 (167)
T ss_dssp --------CCTTEEEEECTTTCCEEEEETTTCCEESSCCC------------CCSCEEEEEEEECCTTSSSCCCSSCSSC
T ss_pred CCCCCCCCCCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 88888889998848988288895788726776377663256653334543333554443321476326567744233332
Q ss_pred CC-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCCCCCCHHHCCHHHHH-HCCCCCCCCCCCEEECCEEEE
Q ss_conf 44-799998643578865223324899-998520132256874675275561367665-112457880123763894899
Q gi|254780396|r 193 QN-QGFVQKRIKDAEESRLRLPKDCNK-LEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEY 269 (317)
Q Consensus 193 ~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~lg~~~~~~l~~~~~~-~~~~~~G~is~pv~t~~G~hi 269 (317)
.. .......+............+... +..++.+++...||++||+..++++|.|.+ ++++++|++|+||+|++||||
T Consensus 83 ~~~~~~~~~~a~~~~~~l~~g~~f~~~aa~~~s~~~sa~~gG~lg~~~~~~l~~~~~~~~~~l~~Geis~pi~t~~G~~i 162 (167)
T 2itk_A 83 TRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHI 162 (167)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCSSGGGGGTTEEEEECTTSSCHHHHHHHHHSCTTCBCCCEEETTEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCEEE
T ss_conf 00299999999999998750212499999870778543322011135434346999999981899983787886991799
Q ss_pred EEEEC
Q ss_conf 99822
Q gi|254780396|r 270 IAICD 274 (317)
Q Consensus 270 ikv~~ 274 (317)
|+|+|
T Consensus 163 ikv~d 167 (167)
T 2itk_A 163 ILRTE 167 (167)
T ss_dssp EEECC
T ss_pred EEEEC
T ss_conf 99949
No 2
>>1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1, phosphorylation; NMR {Arabidopsis thaliana} (A:)
Probab=99.50 E-value=3.9e-16 Score=120.52 Aligned_cols=135 Identities=9% Similarity=-0.021 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH-HHH
Q ss_conf 5546999999899999999843203555899986443211100110023332210246754447999986435788-652
Q gi|254780396|r 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE-SRL 210 (317)
Q Consensus 132 ~~~~~~i~~~l~~~~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 210 (317)
+.|++.++.++++++++...+.+.+.+|+.++..+|+.+...+. .+..+++++... ........+... ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~i~vtd~ei~~~y~~~~~~~~-~~~~~~I~~~~~-------~~a~~~~~~~~~~~~~ 74 (139)
T 1j6y_A 3 SSHHHHHHSSGLVPRGSHMASRDQVKASHILIKHQGSRRKASWK-DPEGKIILTTTR-------EAAVEQLKSIREDIVS 74 (139)
T ss_dssp -----------------CCSSCCSCEEECCEECSCTTSSSSSCS-CCCSCCCSCCCH-------HHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHCC-CCCCCCCCCCCH-------HHHHHHHHHHHHHHHC
T ss_conf 65443321257677765547801289998998157755520002-432111120229-------9999999999999874
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCHHHHH-HCCCCCCCCCCCEEECCEEEEEEEEC
Q ss_conf 23324899998520132256874675275561367665-11245788012376389489999822
Q gi|254780396|r 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICD 274 (317)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~g~lg~~~~~~l~~~~~~-~~~~~~G~is~pv~t~~G~hiikv~~ 274 (317)
....+.+.+..++..+....||++||+..+.+++.+.+ ++++++|++|+||++++|||||+|+.
T Consensus 75 ~~~~F~~~a~~~s~~~~~~~~g~~~~~~~~~l~~~~~~~~~~l~~Geis~pi~~~~g~~Iikv~a 139 (139)
T 1j6y_A 75 GKANFEEVATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRTA 139 (139)
T ss_dssp SCCCCHHHHHHSSCHHHHHTCSEEEECSSSSSCTHHHHHHHHCCSSSCCSCEEETTEEECCCSCC
T ss_pred CCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEEEEEEEC
T ss_conf 84279999999584100256861204612416789999998488998476579599079999939
No 3
>>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, NYSGXRC,11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans DSM12444} (A:)
Probab=99.45 E-value=1.6e-13 Score=104.06 Aligned_cols=104 Identities=12% Similarity=0.137 Sum_probs=85.3
Q ss_pred CCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCHHHHH-HCCC
Q ss_conf 011002333221024675444799998643578865223324899998520132256874675275561367665-1124
Q gi|254780396|r 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKK 252 (317)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lg~~~~~~l~~~~~~-~~~~ 252 (317)
.+..+.++||++..+... .......+.........+..|...+..++...+...+|++||+..+.+++.|.+ ++++
T Consensus 4 ~p~~v~~~~I~i~~~~~~---~~~~~~~a~~i~~~l~~g~~F~~lA~~yS~~~~~~~~g~~g~~~~~~l~~~~~~~~~~l 80 (112)
T 3gpk_A 4 GTEEYRIGEIFLAATEEN---KPQVFANAEKIVEQLKQGGSFVAYARQYSEASTAAVGGDLGWIRLAQLPTELATTAASX 80 (112)
T ss_dssp -CCEEEEEEEEEECCGGG---HHHHHHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSCHHHHHHHHHC
T ss_pred CCCEEEEEEEEEECCCCC---HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 863787999998189425---79999999999999986999899999856353323332100003441046999999818
Q ss_pred CCCCCCCCEEECCEEEEEEEECCCCCCC
Q ss_conf 5788012376389489999822357884
Q gi|254780396|r 253 SQNNTTNPYVTQKGVEYIAICDKRDLGG 280 (317)
Q Consensus 253 ~~G~is~pv~t~~G~hiikv~~~r~~~~ 280 (317)
++|++|+||++++||||++|.++++...
T Consensus 81 ~~Gevs~pi~~~~G~~Iikv~~~~~~~~ 108 (112)
T 3gpk_A 81 GPGQLAGPVEIRGGFSILYLIDKREGHH 108 (112)
T ss_dssp CTTCEEEEEEETTEEEEEEEEEEECCSC
T ss_pred CCCCCCCCEEECCEEEEEEEEEEECCCC
T ss_conf 9998186589899999999964876736
No 4
>>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} (A:)
Probab=99.45 E-value=1.7e-13 Score=103.84 Aligned_cols=100 Identities=13% Similarity=0.177 Sum_probs=81.5
Q ss_pred CHHHHHHHHHCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCHHHHH-HCCCCC
Q ss_conf 0023332210246754447-99998643578865223324899998520132256874675275561367665-112457
Q gi|254780396|r 177 EYLIRTVLFSIPDNKLQNQ-GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQ 254 (317)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lg~~~~~~l~~~~~~-~~~~~~ 254 (317)
++.++||++..+....... ....+.+.+.......+..|...+..+|..++...+|++||+..+.+|+.+.+ ++.+++
T Consensus 2 ~v~~~hI~i~~~~~~~~~~~~~~~~~a~~i~~~l~~g~~F~~la~~~S~d~~~~~~g~~g~~~~~~l~~~~~~~i~~l~~ 81 (103)
T 2pv1_A 2 ELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKK 81 (103)
T ss_dssp CEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSCHHHHHHTTTCCT
T ss_pred CEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 16899999958989998999999999999999988699989996443136653322321213322353256666632689
Q ss_pred CCCCCCEEECCEEEEEEEECCC
Q ss_conf 8801237638948999982235
Q gi|254780396|r 255 NNTTNPYVTQKGVEYIAICDKR 276 (317)
Q Consensus 255 G~is~pv~t~~G~hiikv~~~r 276 (317)
|++|+||++++||||++|+++|
T Consensus 82 G~vs~pi~~~~g~~Iikv~~rr 103 (103)
T 2pv1_A 82 GDIVGPIRSGVGFHILKVNDLR 103 (103)
T ss_dssp TCEEEEEEETTEEEEEEEEEEC
T ss_pred CCCCCCEEECCEEEEEEEEEEC
T ss_conf 9888748989999999996679
No 5
>>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} (A:149-258)
Probab=99.43 E-value=3e-13 Score=102.31 Aligned_cols=105 Identities=12% Similarity=0.158 Sum_probs=85.6
Q ss_pred CCCHHHHHHHHHCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCHHHHH-HCCC
Q ss_conf 110023332210246754447-99998643578865223324899998520132256874675275561367665-1124
Q gi|254780396|r 175 VREYLIRTVLFSIPDNKLQNQ-GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKK 252 (317)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lg~~~~~~l~~~~~~-~~~~ 252 (317)
+..+.++|+++..+....... ......+............|...+..++...+...+|++||+..+.+|+.+.+ ++++
T Consensus 3 ~~~v~~~~Ili~~~~~~~~~~~~~~~~~A~~i~~~l~~g~~F~~la~~ys~d~~~~~~g~~g~~~~~~l~~~~~~~~~~L 82 (110)
T 1m5y_A 3 STELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTA 82 (110)
T ss_dssp -CCEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSCHHHHTGGGTC
T ss_pred CHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHCHHHHHHHHHH
T ss_conf 01232221101100110125688898888889998740126899988703472655167421000443010567777762
Q ss_pred CCCCCCCCEEECCEEEEEEEECCCCCC
Q ss_conf 578801237638948999982235788
Q gi|254780396|r 253 SQNNTTNPYVTQKGVEYIAICDKRDLG 279 (317)
Q Consensus 253 ~~G~is~pv~t~~G~hiikv~~~r~~~ 279 (317)
++|++|+||++++||||++|+++++..
T Consensus 83 ~~GevS~pi~~~~g~~Iikl~~~~~~~ 109 (110)
T 1m5y_A 83 KKGDIVGPIRSGVGFHILKVNDLRGES 109 (110)
T ss_dssp CTTCEEEEEEETTEEEEEEEEEECCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 357645620155358999999876010
No 6
>>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} (A:259-369)
Probab=99.43 E-value=3.1e-13 Score=102.21 Aligned_cols=103 Identities=14% Similarity=0.192 Sum_probs=80.5
Q ss_pred CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCC-CCCCCCCCCCCCHHHCCHHHHH-HCC
Q ss_conf 11002333221024675444799998643578865223-32489999852013-2256874675275561367665-112
Q gi|254780396|r 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL-PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQN-LLK 251 (317)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~g~lg~~~~~~l~~~~~~-~~~ 251 (317)
+..+.++|+++..+.. ..++...+.+.+........ ..|...+..+|..+ +...+|++||+..+++|+.+.+ ++.
T Consensus 4 ~~~~~~~~Ili~~~~~--~~~~~a~~~a~~~~~~l~~g~~~F~~lA~~~S~d~~s~~~~g~lg~~~~~~l~~~~~~~~~~ 81 (111)
T 1m5y_A 4 VTEVHARHILLKPSPI--MTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTR 81 (111)
T ss_dssp CEEEEEEEEEECCCSS--SCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHCCCTTTGGGTTEEEEECGGGSCHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC
T ss_conf 0367888765113200--23379999999999988606344999998728996520126756777745378899999980
Q ss_pred CCCCCCCCCEEECCEEEEEEEECCCCCC
Q ss_conf 4578801237638948999982235788
Q gi|254780396|r 252 KSQNNTTNPYVTQKGVEYIAICDKRDLG 279 (317)
Q Consensus 252 ~~~G~is~pv~t~~G~hiikv~~~r~~~ 279 (317)
+++|++|+||++++|||||+|+++++..
T Consensus 82 l~~Gevs~pi~~~~G~~Iikv~~~~~~~ 109 (111)
T 1m5y_A 82 LNKGQMSAPVHSSFGWHLIELLDTRNVD 109 (111)
T ss_dssp CCTTCBCCCEECSSCEEEEEEEEEEECC
T ss_pred CCCCCCCCCEECCCEEEEEEEEEEECCC
T ss_conf 8999908747748838999998750688
No 7
>>2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase, lipoprotein, membrane, palmitate, rotamase; NMR {Staphylococcus aureus} (A:)
Probab=99.39 E-value=4.5e-13 Score=101.18 Aligned_cols=101 Identities=11% Similarity=0.114 Sum_probs=76.5
Q ss_pred CCCCHHHHHHHHHCCCC----CCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCC-CCCCCCCCCCCCHHHCCHHHH
Q ss_conf 01100233322102467----5444799998643578865223-32489999852013-225687467527556136766
Q gi|254780396|r 174 TVREYLIRTVLFSIPDN----KLQNQGFVQKRIKDAEESRLRL-PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQ 247 (317)
Q Consensus 174 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~g~lg~~~~~~l~~~~~ 247 (317)
.+..+.++|+++..+.. ...........+.......... ..|...+..+|... +...||++||+..+.+++.|+
T Consensus 4 ~~~~v~~~hIli~~~~~~~~~~~~~~~~a~~~a~~~~~~i~~g~~~F~~lA~~yS~d~~s~~~gG~lg~~~~~~~~~~~~ 83 (111)
T 2jzv_A 4 GSDSKKASHILIKVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDKDFE 83 (111)
T ss_dssp CCSEEEEEEEEEEBCSCSSCSSSBCHHHHHHHHHHHHHHHHSCTTSHHHHHHHHCSCHHHHTTTTEEEEEETTSSCHHHH
T ss_pred CCCEEEEEEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 74502688999806887770100479999999999999998295239999999786941013486457767663269999
Q ss_pred H-HCCCCCCCCCCCEEECCEEEEEEEEC
Q ss_conf 5-11245788012376389489999822
Q gi|254780396|r 248 N-LLKKSQNNTTNPYVTQKGVEYIAICD 274 (317)
Q Consensus 248 ~-~~~~~~G~is~pv~t~~G~hiikv~~ 274 (317)
+ ++++++|++|+||+|++||||++|++
T Consensus 84 ~a~~~L~~Geis~pi~t~~G~hIikv~e 111 (111)
T 2jzv_A 84 KALFKLKDGEVSEVVKSSFGYHIIKADK 111 (111)
T ss_dssp HHHHTCCTTCBCCCEEETTEEEEEEECC
T ss_pred HHHHHCCCCCCCCCEEECCEEEEEEEEC
T ss_conf 9998489998288788599889999849
No 8
>>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} (A:62-177)
Probab=99.32 E-value=3.6e-12 Score=95.41 Aligned_cols=79 Identities=14% Similarity=0.104 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCCCCCCCCCHHHCCHHHHH-HCCCCCCCCCCCEEECCEEEEEEEE
Q ss_conf 999986435788652233-24899998520132256874675275561367665-1124578801237638948999982
Q gi|254780396|r 196 GFVQKRIKDAEESRLRLP-KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAIC 273 (317)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~lg~~~~~~l~~~~~~-~~~~~~G~is~pv~t~~G~hiikv~ 273 (317)
......+.+......... .+...+..+++.++...||++||+..+.+++.|.+ ++++++|++|+||+|++|||||+|+
T Consensus 36 ~~~~~~a~~~~~~l~~g~~~f~~~a~~~sd~~s~~~gG~lg~~~~~~l~~~~~~~~~~l~~Geis~pi~t~~GyhIikv~ 115 (116)
T 1yw5_A 36 DESIQILKKHLERILSGEVKLSELANTESDCSSHDRGGDLGFFSKGQMQPPFEEAAFNLHVGEVSNIIETNSGVHILQRT 115 (116)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHCCSGGGGGTTEEEEECTTSSCHHHHHHHHTSCTTCBCCCEEETTEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHHHHHHCCCCCCCCCCEEECCEEEEEEEE
T ss_conf 99999999999998647340899988717555124465322233433589999999828989857757828908999984
Q ss_pred C
Q ss_conf 2
Q gi|254780396|r 274 D 274 (317)
Q Consensus 274 ~ 274 (317)
.
T Consensus 116 g 116 (116)
T 1yw5_A 116 G 116 (116)
T ss_dssp C
T ss_pred C
T ss_conf 9
No 9
>>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} (A:)
Probab=99.28 E-value=6.9e-12 Score=93.65 Aligned_cols=76 Identities=16% Similarity=0.069 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCHHHHH-HCCCCCCCCCCCEEECCEEEEEEEECCC
Q ss_conf 643578865223324899998520132256874675275561367665-1124578801237638948999982235
Q gi|254780396|r 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKR 276 (317)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lg~~~~~~l~~~~~~-~~~~~~G~is~pv~t~~G~hiikv~~~r 276 (317)
.+.+.......+..|...+..++...+...+|++||+..+.+|+.+.+ ++++++|++|+||++++||||++|+++|
T Consensus 16 ~A~~i~~~l~~g~~F~~la~~yS~~~~~~~~G~lg~~~~~~l~~~~~~~~~~l~~geis~pi~~~~g~~Iikv~~~r 92 (92)
T 1jns_A 16 LALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVLYRN 92 (92)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHCSTTTTTGGGCCEEETTSSCHHHHHHHHHSCTTCCEEEEEETTEEEEEEEECCC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEEEEEEEECC
T ss_conf 99999999887998999999848996424688031462220358999999848999967767809848999997369
No 10
>>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli} (A:)
Probab=99.24 E-value=9.2e-12 Score=92.84 Aligned_cols=94 Identities=9% Similarity=0.032 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCHHHCCHHHHHHCCCCC
Q ss_conf 100233322102467544479999864357886522332489999852013-2256874675275561367665112457
Q gi|254780396|r 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ 254 (317)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~lg~~~~~~l~~~~~~~~~~~~ 254 (317)
..+.++||++.. . ..+.........+..|...+..++... +...||++||+..+.+|+.+++++.+++
T Consensus 4 ~~v~~~~I~~~~-------~----~~A~~~~~~l~~g~~F~~lA~~~S~d~~~~~~gG~lg~~~~~~l~~~~~~~~~l~~ 72 (102)
T 2kgj_A 4 QRTRYSIIQTKT-------E----DEAKAVLDELNKGGDFAALAKEKSADIISARNGGDMGWLEDATIPDELKNAGLKEK 72 (102)
T ss_dssp CEEEEEEEEESS-------H----HHHHHHHHHHHHTSCHHHHHHHTCTTHHHHTTTSEEEEEETTCCCHHHHTTCCCST
T ss_pred CEEEEEEEEECC-------H----HHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHCC
T ss_conf 168752164089-------9----99999999988799999999986789652344775523558888979999998289
Q ss_pred CCCCCCEEECCEEEEEEEECCCCCCC
Q ss_conf 88012376389489999822357884
Q gi|254780396|r 255 NNTTNPYVTQKGVEYIAICDKRDLGG 280 (317)
Q Consensus 255 G~is~pv~t~~G~hiikv~~~r~~~~ 280 (317)
|++|+||++++||||++|.++++...
T Consensus 73 G~vs~pi~~~~G~~I~~v~~~~~~~~ 98 (102)
T 2kgj_A 73 GQLSGVIKSSVGFLIVRLDDIQAAHH 98 (102)
T ss_dssp TCEEEEEEETTEEEEEEEEEEECSST
T ss_pred CCCCCCEEECCEEEEEEEEEEECCCC
T ss_conf 98343579799999999936865554
No 11
>>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis} (A:)
Probab=99.10 E-value=1.1e-10 Score=86.11 Aligned_cols=89 Identities=13% Similarity=0.181 Sum_probs=66.6
Q ss_pred CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCHHHCCHHHHH-HCCCC
Q ss_conf 10023332210246754447999986435788652233248999985201322-56874675275561367665-11245
Q gi|254780396|r 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD-VSIGKAQYLLESDLHPQFQN-LLKKS 253 (317)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~lg~~~~~~l~~~~~~-~~~~~ 253 (317)
..+.++|+++. .+ ..+............|...+..++.+... ..||++||+..+.++|.+.+ +++++
T Consensus 3 ~~v~~~~I~~~-------~~----~~A~~~~~~l~~g~~F~~lA~~yS~d~~~~~~gg~~g~~~~~~l~~~~~~~~~~l~ 71 (93)
T 1zk6_A 3 GKIRASHILVA-------DK----KTAEEVEKKLKKGEKFEDLAKEYSTDSSASKGGDLGWFAKEGQMDETFSKAAFKLK 71 (93)
T ss_dssp CCEEEEEEEES-------SH----HHHHHHHHHHHHTCCHHHHHHHHCCSGGGGGTTEEEEECTTTSSCTTHHHHHHHSC
T ss_pred CEEEEEEEEEC-------CH----HHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCEECCCCCCCHHHHHHHHCCC
T ss_conf 72899999988-------98----99999999998699999999773438743458622211027834468999985189
Q ss_pred CCCCCCCEEECCEEEEEEEECC
Q ss_conf 7880123763894899998223
Q gi|254780396|r 254 QNNTTNPYVTQKGVEYIAICDK 275 (317)
Q Consensus 254 ~G~is~pv~t~~G~hiikv~~~ 275 (317)
+|++|+||++++||||++|.+|
T Consensus 72 ~G~vs~pi~~~~g~~Ii~v~~r 93 (93)
T 1zk6_A 72 TGEVSDPVKTQYGYHIIKKTEE 93 (93)
T ss_dssp TTCBCCCEECSSCEEEEEEEEC
T ss_pred CCCCCCCEEECCEEEEEEEECC
T ss_conf 9983776896998999999478
No 12
>>1eq3_A Peptidyl-prolyl CIS/trans isomerase (ppiase); parvulin; NMR {Homo sapiens} (A:)
Probab=99.02 E-value=3.3e-10 Score=83.01 Aligned_cols=72 Identities=13% Similarity=0.143 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCHHHHH-HCCCCCCCCCC------CEEECCEEEEEEEECCC
Q ss_conf 578865223324899998520132256874675275561367665-11245788012------37638948999982235
Q gi|254780396|r 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTN------PYVTQKGVEYIAICDKR 276 (317)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lg~~~~~~l~~~~~~-~~~~~~G~is~------pv~t~~G~hiikv~~~r 276 (317)
+.......+.+|...+..++.+... ..|.+||+..+.+++.|.+ ++++++|++|. |+++++||||++|+++|
T Consensus 18 ~i~~~l~~G~~F~~lA~~~S~d~~~-~~gg~g~~~~~~l~~~~~~~~~~l~~g~vS~~~~~~~pv~s~~G~hIikv~~~r 96 (96)
T 1eq3_A 18 EAMEKLKSGMRFNEVAAQYSEDKAR-QGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 96 (96)
T ss_dssp HHHHHHTTTTSHHHHHHHHCCCTTT-CCSEEEEESSCCSSSHHHHHHHHCCSCCSSTTTBCSSCEEETTEEEEEEEEECC
T ss_pred HHHHHHHCCCCHHHHHHHHCCCHHH-CCCCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEECCEEEEEEEEEEC
T ss_conf 9999988799999999985754043-189744067552567999999847887524666668976708878999996689
No 13
>>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} (A:1-70,A:401-408)
Probab=98.94 E-value=2.4e-09 Score=77.58 Aligned_cols=62 Identities=18% Similarity=0.303 Sum_probs=53.3
Q ss_pred CCCCCEEEEECCEECCHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 1348269998867868899999999987303--------5035999999999999999864200122344
Q gi|254780396|r 37 AMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGELEKIAVQELIVETLKKQEIEKSGITFD 98 (317)
Q Consensus 37 ~~~~~vvA~Vng~~It~~e~~~~~~~~~~~~--------~~~~~~~~~l~~LI~~~l~~~~a~~~~i~v~ 98 (317)
...++|||+|||++||.+|+++++.....+. ....+++++|++||+++|+.|+|++.|+..-
T Consensus 3 ~~~d~IvAvVNge~It~sel~~~~~~~~~~~~~~~~~~~~~~~lr~qvLd~LI~~~Ll~Q~A~k~gI~~~ 72 (78)
T 1m5y_A 3 QVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKAY 72 (78)
T ss_dssp --CCCEEEEESSSEEEHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSC
T ss_pred CCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 5346389999999738999999999999987633568984599999999999999999999998499983
No 14
>>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} (A:71-132,A:370-400)
Probab=98.72 E-value=4.8e-08 Score=69.33 Aligned_cols=72 Identities=11% Similarity=0.176 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 444566899999997313430356777765311245546999999899999999843203555899986443
Q gi|254780396|r 97 FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168 (317)
Q Consensus 97 v~~~~i~~~i~~~~~~~~~~~~~~~~~l~~~g~t~~~~~~~i~~~l~~~~~~~~~~~~~i~~~~~e~~~~~~ 168 (317)
|++.+|++++..+++++++|.++|.+.|.+.|++++.|++.|+.+++|+++++..+.+++.|........|.
T Consensus 1 VsD~EVD~aI~~IAqqN~lT~eql~~~L~~qGis~e~fR~qIR~eIl~~rL~q~~V~skI~V~~~~~~~~~~ 72 (93)
T 1m5y_A 1 ISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITIDAAQKDRAYR 72 (93)
T ss_dssp CCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTCCC------HHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 699999999999998705247999999997499878888888999999998743000001344657999999
No 15
>>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima} (A:)
Probab=98.14 E-value=4.7e-05 Score=50.38 Aligned_cols=103 Identities=10% Similarity=0.085 Sum_probs=83.5
Q ss_pred CCEECCHHHHHHHHHHHHH----HC--------------CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 8678688999999999873----03--------------50359999999999999998642001223444566899999
Q gi|254780396|r 47 NGEVITDGDISKRIALLKL----QK--------------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108 (317)
Q Consensus 47 ng~~It~~e~~~~~~~~~~----~~--------------~~~~~~~~~l~~LI~~~l~~~~a~~~~i~v~~~~i~~~i~~ 108 (317)
...+|+.+-+++.+..... +. -...++.++++.++...++.+.|++.||.|+++++++.+..
T Consensus 41 ~~~~iP~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~a~~~lk~~lil~~ia~~e~I~Vs~eei~~~i~~ 120 (170)
T 2nsa_A 41 VEIEISDRTLEILVNEAINRLKREGRYEQIVSSYESEEKFREELKERILDDIKRDRVIEVLAQEKGISVNDEELEKEAEE 120 (170)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 88899889999999999999999876455554424689888889999999999999999999885788999999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99731343035677776531124554699999989999999
Q gi|254780396|r 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149 (317)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~~g~t~~~~~~~i~~~l~~~~~~~ 149 (317)
++.++|.+.+.+...+..+|.....+++.+..+..+..++.
T Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~kv~~~l~~ 161 (170)
T 2nsa_A 121 LAPFWGISPDRAKSLVKARQDLREELRWAILKRKVLDLLLQ 161 (170)
T ss_dssp HHHHHTSCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99886999999999998588999999999999999999999
No 16
>>1zxj_A MPN555, hypothetical protein Mg377 homolog; mostly alpha helical protein, TRI-lobal structure, structural genomics, PSI; 2.80A {Mycoplasma pneumoniae} (A:)
Probab=92.85 E-value=0.58 Score=24.49 Aligned_cols=93 Identities=9% Similarity=-0.044 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999864200122344456689999999731343035677776531124554699999989999999984
Q gi|254780396|r 73 EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152 (317)
Q Consensus 73 ~~~~l~~LI~~~l~~~~a~~~~i~v~~~~i~~~i~~~~~~~~~~~~~~~~~l~~~g~t~~~~~~~i~~~l~~~~~~~~~~ 152 (317)
..+..+.++.+.++........+.+++..++..+..+..+...+ .....+++.....+.++-++....
T Consensus 82 ~~~~~~~~~~~~i~~~l~~~~~~~lpe~~i~~e~~~~~~~~~~~------------~~~e~~~~~aek~lk~~lil~~ia 149 (218)
T 1zxj_A 82 THIVIKDNLFSCAMNAIVGYFEFNIDEAELKNVMEGLKRDVIQG------------AEDNTVQAIAEKIIKKALVFNHLQ 149 (218)
T ss_dssp HHHHHHHHHHHHHHHHHGGGEEEECCHHHHHHHHHHHHHC-----------------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999874888899999999999988999865------------013678999999999999999999
Q ss_pred -HHHCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf -3203555899986443211100110
Q gi|254780396|r 153 -MLKYGNLEMEIPANKQKMKNITVRE 177 (317)
Q Consensus 153 -~~~i~~~~~e~~~~~~~~~~~~~~~ 177 (317)
..++.+++.++..+...........
T Consensus 150 ~~e~i~vt~eei~~~i~~~a~~~~~~ 175 (218)
T 1zxj_A 150 KEWKVEITDEVVKNVISLYYEKTNQS 175 (218)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHHSCSC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98089999999999999988337899
No 17
>>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} (A:121-151,A:258-392)
Probab=90.99 E-value=0.94 Score=23.16 Aligned_cols=123 Identities=11% Similarity=0.068 Sum_probs=70.5
Q ss_pred CEECCHHHHHHHHHHHHHHCC-------HHHHHHHH-----------HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 678688999999999873035-------03599999-----------999999999986420012234445668999999
Q gi|254780396|r 48 GEVITDGDISKRIALLKLQKI-------NGELEKIA-----------VQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109 (317)
Q Consensus 48 g~~It~~e~~~~~~~~~~~~~-------~~~~~~~~-----------l~~LI~~~l~~~~a~~~~i~v~~~~i~~~i~~~ 109 (317)
.-.+|..|+...+..+..+.. ...++..+ .+......++.+.+....+.+++..+++.+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~TleeLk~~ire~le~~~~~~~~~~~~~~ild~L~e~~~~dlPeslv~~e~~~l 91 (166)
T 1t11_A 12 AAEVTDADVAEMLETLRKQQRFGVAEGGVDALKAEVRKNMERELKQAIKARIKEQAIEGLVKENEIQVPSALIDQEINVL 91 (166)
T ss_dssp CC---CTHHHHHHHHHHHHHGGSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTBCSCCCEEECHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 43432078999999987652708754557899999999999999999998888789999997436679807899999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 973134303567777653112455-----4699999989999999984-3203555899986443211100110
Q gi|254780396|r 110 ARNTGLSAEDFSSFLDKQGIGDNH-----FKQYLAIQSIWPDVVKNDF-MLKYGNLEMEIPANKQKMKNITVRE 177 (317)
Q Consensus 110 ~~~~~~~~~~~~~~l~~~g~t~~~-----~~~~i~~~l~~~~~~~~~~-~~~i~~~~~e~~~~~~~~~~~~~~~ 177 (317)
..+ +.+.+...|++.++ +++.....+.+.-++.... ..++.+++.++..++.......+.+
T Consensus 92 ~~~-------~~~~l~~~g~~~ee~~~ee~~~~Aek~vK~~lil~~IA~~e~I~vseeEi~~~i~~~A~~yg~~ 158 (166)
T 1t11_A 92 RQQ-------AAQRFGGNVEAAAQLPRELFEEQAKRRVVVGLLLGEVIRTHELKADEEKVKALITEMATAYEDP 158 (166)
T ss_dssp HHH-------HHHHSSCSHHHHTTSCGGGTHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHCC---
T ss_pred HHH-------HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCH
T ss_conf 999-------9988277834444667889999999999999999999999789889999999999999846998
No 18
>>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, cytoplasm, DNA-binding, transcription; HET: PAM; 1.90A {Vibrio cholerae O395} (A:)
Probab=42.16 E-value=19 Score=14.93 Aligned_cols=43 Identities=7% Similarity=-0.017 Sum_probs=36.2
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999731343035677776531124554699999989999999
Q gi|254780396|r 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149 (317)
Q Consensus 107 ~~~~~~~~~~~~~~~~~l~~~g~t~~~~~~~i~~~l~~~~~~~ 149 (317)
..++...+++...+...+++.|.|+.+|...+|-+.+...+..
T Consensus 189 ~~lA~~~~~S~~~l~r~fk~~G~s~~~~i~~~Rl~~A~~lL~~ 231 (276)
T 3gbg_A 189 ADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKT 231 (276)
T ss_dssp HHHHHHHTCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 9999997979999999999949989999999999999999876
No 19
>>2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein, metal-binding protein, TAT; 1.70A {Synechocystis SP} PDB: 2vp1_A* (A:)
Probab=32.44 E-value=27 Score=13.96 Aligned_cols=32 Identities=13% Similarity=-0.036 Sum_probs=20.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 99998642001223444566899999997313
Q gi|254780396|r 83 ETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114 (317)
Q Consensus 83 ~~l~~~~a~~~~i~v~~~~i~~~i~~~~~~~~ 114 (317)
+.++....++.++.|..++....+........
T Consensus 48 ~~~~~~F~~~~~i~v~~~~~~~~l~~~~~~g~ 79 (346)
T 2voz_A 48 DALYDAFGEVNLIEASAEELIERIQSEGANSP 79 (346)
T ss_dssp HHHHHHHSEEEEEECCHHHHHHHHHHTGGGCC
T ss_pred HHHHHHHCEEEEEECCHHHHHHHHHHHCCCCC
T ss_conf 99997422688898474999999997358999
No 20
>>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} (A:297-413)
Probab=31.37 E-value=24 Score=14.29 Aligned_cols=45 Identities=7% Similarity=0.053 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 456689999999731343035677776531124554699999989
Q gi|254780396|r 99 SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143 (317)
Q Consensus 99 ~~~i~~~i~~~~~~~~~~~~~~~~~l~~~g~t~~~~~~~i~~~l~ 143 (317)
.+.+...++....-+|.+++++++.-+..|.+.++++..++....
T Consensus 10 ~~~l~~~L~~Yr~~FGlDd~SLq~lA~~~~~pv~~lka~iKSp~~ 54 (117)
T 1tq4_A 10 LETLKKSMKFYRTVFGVDETSLQRLARDWEIEVDQVEAMIKSPAV 54 (117)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHSSSSSCHHHHHHTCSHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHCHHH
T ss_conf 999999999999974998799999999909989999999808677
No 21
>>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structure initiative; 1.70A {Plasmodium falciparum 3D7} PDB: 2auc_A (A:80-146)
Probab=24.54 E-value=32 Score=13.45 Aligned_cols=39 Identities=8% Similarity=0.033 Sum_probs=23.3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 986420012234445668999999973134303567777
Q gi|254780396|r 86 KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124 (317)
Q Consensus 86 ~~~~a~~~~i~v~~~~i~~~i~~~~~~~~~~~~~~~~~l 124 (317)
+.......|..++++++...+..+-..+..+-+.|.+.+
T Consensus 27 l~~~l~~lg~~~~~~e~~~~~~d~d~dg~I~~~eF~~~~ 65 (67)
T 2qac_A 27 MKNILTTWGDALTDQEAIDALNAFSSEDNIDYKLFCEDI 65 (67)
T ss_dssp HHHHHHHSSSCCCHHHHHHHHHHHCSSSEEEHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 999999808999999999999964989989499999997
Done!