HHsearch results for GI: 254780396 and protein with PDBid: 1m5y_A

>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A
Probab=100.00  E-value=2.1e-38  Score=260.58  Aligned_cols=280  Identities=15%  Similarity=0.233  Sum_probs=222.9

Q ss_pred             CCCCCCEEEEECCEECCHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             11348269998867868899999999987303--------5035999999999999999864200122344456689999
Q gi|254780396|r   36 WAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV  107 (317)
Q Consensus        36 ~~~~~~vvA~Vng~~It~~e~~~~~~~~~~~~--------~~~~~~~~~l~~LI~~~l~~~~a~~~~i~v~~~~i~~~i~  107 (317)
                      +...++|||+|||++||.+||++++..+..+.        ....+++++|++||++.|+.++|+++|+.|+++++++++.
T Consensus         2 ~~~~~~ivA~Vng~~It~~d~~~~~~~~~~~~~~~~~~~~~~~~lr~qvl~~LI~~~Ll~q~A~~lgi~vsd~ev~~~i~   81 (408)
T 1m5y_A            2 PQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIA   81 (408)
T ss_dssp             ---CCCEEEEESSSEEEHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             CCCCCEEEEEECCEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             85347179999999628999999999999987632467984599999999999999999999998499979999999999


Q ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC------------
Q ss_conf             99973134303567777653112455469999998999999998432035558999864432111001------------
Q gi|254780396|r  108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV------------  175 (317)
Q Consensus       108 ~~~~~~~~~~~~~~~~l~~~g~t~~~~~~~i~~~l~~~~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~------------  175 (317)
                      .+..+++++.+.+.+.|...|+++..|++.++.++.|.++....+.+.+.+++.++..++........            
T Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  161 (408)
T 1m5y_A           82 NIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILI  161 (408)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCTTHHHHHHHCC-------CCEEEEEEEE
T ss_pred             HHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHC
T ss_conf             99987142378899999973888788888788999999988665321014663567899987431013310332111101


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|254780396|r  176 --------------------------------------------------------------------------------  175 (317)
Q Consensus       176 --------------------------------------------------------------------------------  175 (317)
                                                                                                      
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~g~i~~~~~~  241 (408)
T 1m5y_A          162 PLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRS  241 (408)
T ss_dssp             ECCSSCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSCHHHHTGGGTCCTTCEEEEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHCCCCCCCCHHHCCHHHHHHHHHHCCCCCCCCCCC
T ss_conf             23331016789998877899999875100499998871236265526863323301100167888765135764454235


Q ss_pred             ---------------------CCHHHHHHHHHCCCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCC-CCCCCC
Q ss_conf             ---------------------100233322102467544479999864357-886522332489999852013-225687
Q gi|254780396|r  176 ---------------------REYLIRTVLFSIPDNKLQNQGFVQKRIKDA-EESRLRLPKDCNKLEKFASKI-HDVSIG  232 (317)
Q Consensus       176 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~g  232 (317)
                                           ..+.++|+++.....  ............. .........++..+..++.++ +...||
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~il~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~F~~~a~~~s~d~~s~~~gg  319 (408)
T 1m5y_A          242 GVGFHILKVNDLRGESKNISVTEVHARHILLKPSPI--MTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGG  319 (408)
T ss_dssp             TTEEEEEEEEEECCCCCCCCCEEEEEEEEEECCCSS--SCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHCCCTTTGGGTT
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCC--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHCC
T ss_conf             542799999987621001333202034444148776--333899999999999987263238999998288955042057


Q ss_pred             CCCCCCHHHCCHHHHH-HCCCCCCCCCCCEEECCEEEEEEEECCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             4675275561367665-11245788012376389489999822357884-457899999999999999999999999997
Q gi|254780396|r  233 KAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAYLSAQNTPTKIEKHEAEYVKKLRS  310 (317)
Q Consensus       233 ~lg~~~~~~l~~~~~~-~~~~~~G~is~pv~t~~G~hiikv~~~r~~~~-~~~~~~~i~~~l~~~~~~~~~~~~l~~Lr~  310 (317)
                      ++||+..+.++|.|.. ++.+++|++|+||+|++|||||+|+++++... +...++.|+..|.+++..+.+..|+++||+
T Consensus       320 ~lg~~~~~~~~~~~~~ai~~l~~G~is~pv~t~~G~hii~v~~~~~~~~~~~~~~~~i~~~l~~~k~~~~~~~~l~~lr~  399 (408)
T 1m5y_A          320 DLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRA  399 (408)
T ss_dssp             EEEEECGGGSCHHHHHHHHTCCTTCBCCCEECSSCEEEEEEEEEEECC--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             56667745478899999981899990874783884899999874068887465799999999999999999999999984


Q ss_pred             HCCCCCC
Q ss_conf             5477509
Q gi|254780396|r  311 NAIIHYY  317 (317)
Q Consensus       311 ~A~I~~f  317 (317)
                      +|.|++.
T Consensus       400 ~a~I~i~  406 (408)
T 1m5y_A          400 SAYVKIL  406 (408)
T ss_dssp             HSCEEEC
T ss_pred             CCEEEEE
T ss_conf             5928873