Query gi|254780396|ref|YP_003064809.1| peptidyl-prolyl cis-trans isomerase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 317
No_of_seqs 145 out of 3262
Neff 10.2
Searched_HMMs 13730
Date Wed Jun 1 05:42:15 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780396.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m5ya1 a.223.1.2 (A:25-164,A: 99.9 1.3E-21 9.4E-26 152.7 13.5 133 39-171 1-141 (173)
2 d1pina2 d.26.1.1 (A:45-163) Mi 99.5 2.6E-15 1.9E-19 112.9 6.1 102 173-274 6-119 (119)
3 d1m5ya3 d.26.1.1 (A:279-386) P 99.5 4.2E-15 3.1E-19 111.5 6.4 102 175-278 4-108 (108)
4 d2pv2a1 d.26.1.1 (A:172-274) P 99.5 3.9E-15 2.8E-19 111.7 6.0 101 176-276 1-103 (103)
5 d1j6ya_ d.26.1.1 (A:) Mitotic 99.4 1E-14 7.5E-19 109.0 2.3 99 175-273 5-119 (120)
6 d1jnsa_ d.26.1.1 (A:) Parvulin 99.4 9.7E-14 7.1E-18 102.9 6.5 66 210-275 25-91 (92)
7 d1eq3a_ d.26.1.1 (A:) Parvulin 99.4 2E-13 1.4E-17 101.0 4.3 88 177-276 2-96 (96)
8 d1w26a1 a.223.1.1 (A:248-432) 92.4 0.27 2E-05 24.1 10.7 111 52-176 15-133 (185)
9 d1zupa1 c.55.3.11 (A:1-301) Hy 39.1 7 0.00051 15.2 1.9 46 230-276 169-225 (301)
10 d1t11a1 a.223.1.1 (A:248-376) 33.7 10 0.00075 14.1 8.1 92 73-170 31-127 (129)
No 1
>d1m5ya1 a.223.1.2 (A:25-164,A:395-427) Porin chaperone SurA, peptide-binding domain {Escherichia coli [TaxId: 562]}
Probab=99.87 E-value=1.3e-21 Score=152.74 Aligned_cols=133 Identities=17% Similarity=0.296 Sum_probs=121.7
Q ss_pred CCCEEEEECCEECCHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 48269998867868899999999987303--------5035999999999999999864200122344456689999999
Q gi|254780396|r 39 SSRIRTTINGEVITDGDISKRIALLKLQK--------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110 (317)
Q Consensus 39 ~~~vvA~Vng~~It~~e~~~~~~~~~~~~--------~~~~~~~~~l~~LI~~~l~~~~a~~~~i~v~~~~i~~~i~~~~ 110 (317)
.|+|||+|||++||.+|+++++.+...+. ....+++++|+.||+++|+.++|++.|+.+++.+++..+..++
T Consensus 1 VD~VvA~Vn~~~It~~dl~~~~~~~~~~~~~~~~~~~~~~~l~~~vl~~LI~~~Ll~q~a~~~~i~vs~~ev~~~i~~~~ 80 (173)
T d1m5ya1 1 VDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIA 80 (173)
T ss_dssp CCCEEEEESSSEEEHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCEEEEEECCEEECHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 97389988998577999999999999998753577984247999999999999999999987044589999999999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 7313430356777765311245546999999899999999843203555899986443211
Q gi|254780396|r 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171 (317)
Q Consensus 111 ~~~~~~~~~~~~~l~~~g~t~~~~~~~i~~~l~~~~~~~~~~~~~i~~~~~e~~~~~~~~~ 171 (317)
.+++++.+.|.++|.++|+++..|++.++.+++|++++...+.+++.+|+.++..+|....
T Consensus 81 ~~~~~~~~~f~~~L~~~g~~~~~~~~~ir~~l~~~~l~~~~v~~~i~Vt~~Ei~~~~~~~~ 141 (173)
T d1m5ya1 81 KQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVD 141 (173)
T ss_dssp HHTTCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCTTHHHHHHHCCC
T ss_pred HHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 8858989999999987399899999999999999999999831689869999999999887
No 2
>d1pina2 d.26.1.1 (A:45-163) Mitotic rotamase PIN1, domain 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.55 E-value=2.6e-15 Score=112.85 Aligned_cols=102 Identities=9% Similarity=0.057 Sum_probs=77.0
Q ss_pred HCCCCHHHHHHHHHCCCCCC----------CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf 00110023332210246754----------44799998643578865223-32489999852013225687467527556
Q gi|254780396|r 173 ITVREYLIRTVLFSIPDNKL----------QNQGFVQKRIKDAEESRLRL-PKDCNKLEKFASKIHDVSIGKAQYLLESD 241 (317)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~lg~~~~~~ 241 (317)
..+..++++||++....... ...+...+.+.......... ..|...+..+|.+++...||++||+..+.
T Consensus 6 ~~p~~vr~~HILi~~~~~~~~~~~~~~~i~~~k~ea~~~~~~i~~~i~~g~~~F~~lA~~~Sd~~s~~~gG~lg~~~~~~ 85 (119)
T d1pina2 6 GEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQ 85 (119)
T ss_dssp CCCSCEEEEEEEECCTTSSSCCBTTBSSCCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCSSGGGGGTTEEEEECTTS
T ss_pred CCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH
T ss_conf 99768999988981687767112100110104999999999999999818351999998838884423322112345214
Q ss_pred CCHHHHH-HCCCCCCCCCCCEEECCEEEEEEEEC
Q ss_conf 1367665-11245788012376389489999822
Q gi|254780396|r 242 LHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICD 274 (317)
Q Consensus 242 l~~~~~~-~~~~~~G~is~pv~t~~G~hiikv~~ 274 (317)
++|.|.+ ++++++|++|+||+|++|||||+|+|
T Consensus 86 l~~~f~~~~~~l~~GeiS~pi~t~~G~HIikv~d 119 (119)
T d1pina2 86 MQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 119 (119)
T ss_dssp SCHHHHHHHHHCCTTCBCCCEECSSCEEEEEECC
T ss_pred HHHHHHHHHHCCCCCCCCCCEEECCCEEEEEEEC
T ss_conf 7789998874489998677588099079999949
No 3
>d1m5ya3 d.26.1.1 (A:279-386) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]}
Probab=99.54 E-value=4.2e-15 Score=111.51 Aligned_cols=102 Identities=14% Similarity=0.208 Sum_probs=77.7
Q ss_pred CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCHHHCCHHHHH-HCC
Q ss_conf 1100233322102467544479999864357886-522332489999852013-2256874675275561367665-112
Q gi|254780396|r 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES-RLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQN-LLK 251 (317)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~g~lg~~~~~~l~~~~~~-~~~ 251 (317)
.+++.++||++........ +............ ......|...+..+|.+. +...||++||+..+.+|+.|.. +++
T Consensus 4 ~tev~vrHILi~~~~~~~~--~~a~~~~~~i~~~l~~~~~~F~~lA~~~S~d~~~~~~gG~lgw~~~~~l~~~~~~~~~~ 81 (108)
T d1m5ya3 4 VTEVHARHILLKPSPIMTD--EQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTR 81 (108)
T ss_dssp CEEEEEEEEEECCCSSSCH--HHHHHHHHHHHHHHHTTSSCHHHHHHHHCCCTTTGGGTTEEEEECGGGSCHHHHHHHHT
T ss_pred CCEEEEEEEEECCCCCCCH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 3289999999828999999--99999999999999838552999998717587644333211212211024799999985
Q ss_pred CCCCCCCCCEEECCEEEEEEEECCCCC
Q ss_conf 457880123763894899998223578
Q gi|254780396|r 252 KSQNNTTNPYVTQKGVEYIAICDKRDL 278 (317)
Q Consensus 252 ~~~G~is~pv~t~~G~hiikv~~~r~~ 278 (317)
+++|++|+||+|++||||++|+++|.+
T Consensus 82 l~~GeiS~pi~t~~G~hIikl~~~r~v 108 (108)
T d1m5ya3 82 LNKGQMSAPVHSSFGWHLIELLDTRNV 108 (108)
T ss_dssp CCTTCBCCCEECSSCEEEEEEEEEEEC
T ss_pred CCCCCCCCCEEECCEEEEEEEEEEECC
T ss_conf 799987862895998899999778439
No 4
>d2pv2a1 d.26.1.1 (A:172-274) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]}
Probab=99.54 E-value=3.9e-15 Score=111.74 Aligned_cols=101 Identities=13% Similarity=0.175 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCHHHHH-HCCCC
Q ss_conf 10023332210246754447-99998643578865223324899998520132256874675275561367665-11245
Q gi|254780396|r 176 REYLIRTVLFSIPDNKLQNQ-GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKS 253 (317)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lg~~~~~~l~~~~~~-~~~~~ 253 (317)
+++.++|+++.++.+....+ ....+..............|...+..++...+...||++||+..+++|+.|.+ +++++
T Consensus 1 te~~~~hIli~~~~~~~~~~~~~~~~~a~~~~~~l~~g~~F~~la~~~S~~~~~~~gG~lg~~~~~~l~~~~~~~i~~l~ 80 (103)
T d2pv2a1 1 TELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAK 80 (103)
T ss_dssp CEEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEEEGGGSBHHHHHHHHTCC
T ss_pred CCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 91689999995898999899999999999999998869998998333122544110011011332235325666663268
Q ss_pred CCCCCCCEEECCEEEEEEEECCC
Q ss_conf 78801237638948999982235
Q gi|254780396|r 254 QNNTTNPYVTQKGVEYIAICDKR 276 (317)
Q Consensus 254 ~G~is~pv~t~~G~hiikv~~~r 276 (317)
+|++|+||+|++||||++|+++|
T Consensus 81 ~G~is~pi~t~~G~hIikl~~~R 103 (103)
T d2pv2a1 81 KGDIVGPIRSGVGFHILKVNDLR 103 (103)
T ss_dssp TTCEEEEEEETTEEEEEEEEEEC
T ss_pred CCCCCCCEEECCEEEEEEEEEEC
T ss_conf 99888758979999999996579
No 5
>d1j6ya_ d.26.1.1 (A:) Mitotic rotamase PIN1, domain 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.44 E-value=1e-14 Score=109.05 Aligned_cols=99 Identities=9% Similarity=0.052 Sum_probs=72.1
Q ss_pred CCCHHHHHHHHHCCCCCC--------------CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 110023332210246754--------------44799998643578865223-324899998520132256874675275
Q gi|254780396|r 175 VREYLIRTVLFSIPDNKL--------------QNQGFVQKRIKDAEESRLRL-PKDCNKLEKFASKIHDVSIGKAQYLLE 239 (317)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~lg~~~~ 239 (317)
...++++||++....... ...+.....+.......... ..|...+..+|+.++...||++||+..
T Consensus 5 ~e~vr~sHILik~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~i~~g~~~F~~lA~~~Sd~~s~~~GG~lGw~~~ 84 (120)
T d1j6ya_ 5 RDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLGSFGR 84 (120)
T ss_dssp CCSCEEECCEECSCTTSSSSSCSCCCSCCCSCCCHHHHHHHHHHHHHHHHSSCCCCHHHHHHSSCHHHHHTCSEEEECSS
T ss_pred CCEEEEEEEEECCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf 33189999998267654503320210000010109999999999999987373549999998288753344311342102
Q ss_pred HHCCHHHHH-HCCCCCCCCCCCEEECCEEEEEEEE
Q ss_conf 561367665-1124578801237638948999982
Q gi|254780396|r 240 SDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAIC 273 (317)
Q Consensus 240 ~~l~~~~~~-~~~~~~G~is~pv~t~~G~hiikv~ 273 (317)
++++|.|.+ ++.+++|++|+||+|++|||||+|+
T Consensus 85 ~~l~~~f~~~~~~l~~G~is~pi~t~~G~HIikvt 119 (120)
T d1j6ya_ 85 GQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRT 119 (120)
T ss_dssp SSSCTHHHHHHHHCCSSSCCSCEEETTEEECCCSC
T ss_pred HHCCHHHHHHHHCCCCCCCCCCEEECCEEEEEEEE
T ss_conf 11490899999709999838777969936999993
No 6
>d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli [TaxId: 562]}
Probab=99.43 E-value=9.7e-14 Score=102.89 Aligned_cols=66 Identities=15% Similarity=0.093 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCHHHHH-HCCCCCCCCCCCEEECCEEEEEEEECC
Q ss_conf 223324899998520132256874675275561367665-112457880123763894899998223
Q gi|254780396|r 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDK 275 (317)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~g~lg~~~~~~l~~~~~~-~~~~~~G~is~pv~t~~G~hiikv~~~ 275 (317)
..+..|...+..+|.+++...||++||+..+.++|.|.+ ++++++|++|+||+|++|||||+|++|
T Consensus 25 ~~g~~F~~lA~~~S~d~s~~~gG~lG~~~~~~l~~~f~~~~~~l~~G~vs~pi~t~~G~HIikv~dr 91 (92)
T d1jnsa_ 25 KNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVLYR 91 (92)
T ss_dssp HHTCCHHHHHHHHHCSTTTTTGGGCCEEETTSSCHHHHHHHHHSCTTCCEEEEEETTEEEEEEEECC
T ss_pred HCCCCHHHHHHHHCCCCCCCHHHHHCEEEHHHHHHHHHHHHHHCCCCCCCCCEEECCEEEEEEEEEC
T ss_conf 8799889999986889520023100013386632379999982899984777895994899999737
No 7
>d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14 [TaxId: 9606]}
Probab=99.36 E-value=2e-13 Score=100.95 Aligned_cols=88 Identities=13% Similarity=0.122 Sum_probs=64.1
Q ss_pred CHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCHHHHH-HCCCCCC
Q ss_conf 002333221024675444799998643578865223324899998520132256874675275561367665-1124578
Q gi|254780396|r 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQN 255 (317)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lg~~~~~~l~~~~~~-~~~~~~G 255 (317)
.+.++||++... ... .+.........+|...+..++.++ +..+|++||+..++++|+|++ +|++++|
T Consensus 2 ~v~vrHIl~~~~----~~a-------~~i~~~i~~g~~F~~lA~~~S~d~-~~~~G~lG~~~~~~l~~ef~~a~f~l~~g 69 (96)
T d1eq3a_ 2 AVKVRHILCEKH----GKI-------MEAMEKLKSGMRFNEVAAQYSEDK-ARQGGDLGWMTRGSMVGPFQEAAFALPVS 69 (96)
T ss_dssp CEEEEEEEECCC----STH-------HHHHHHHTTTTSHHHHHHHHCCCT-TTCCSEEEEESSCCSSSHHHHHHHHCCSC
T ss_pred CEEEEEEEECCH----HHH-------HHHHHHHHCCCCHHHHHHHHCCCC-CCCCCCCCEECHHHHHHHHHHHHHHCCCC
T ss_conf 478999998788----999-------999999887998899998817673-11223344233677548999999857777
Q ss_pred CCC------CCEEECCEEEEEEEECCC
Q ss_conf 801------237638948999982235
Q gi|254780396|r 256 NTT------NPYVTQKGVEYIAICDKR 276 (317)
Q Consensus 256 ~is------~pv~t~~G~hiikv~~~r 276 (317)
++| +||+|++|||||+|+++|
T Consensus 70 ~is~~~~~~~pi~T~~G~HIikv~~kr 96 (96)
T d1eq3a_ 70 GMDKPVFTDPPVKTKFGYHIIMVEGRK 96 (96)
T ss_dssp CSSTTTBCSSCEEETTEEEEEEEEECC
T ss_pred CCCCCCCCCCCEECCCEEEEEEEEEEC
T ss_conf 573566568987649868999996689
No 8
>d1w26a1 a.223.1.1 (A:248-432) Trigger factor, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=92.39 E-value=0.27 Score=24.11 Aligned_cols=111 Identities=8% Similarity=0.057 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC----CCCCHHHHHHHHHH
Q ss_conf 88999999999873035035999999999999999864200122344456689999999731----34303567777653
Q gi|254780396|r 52 TDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT----GLSAEDFSSFLDKQ 127 (317)
Q Consensus 52 t~~e~~~~~~~~~~~~~~~~~~~~~l~~LI~~~l~~~~a~~~~i~v~~~~i~~~i~~~~~~~----~~~~~~~~~~l~~~ 127 (317)
|..++...++..-. .......+..+...++........+.+++..|++.+..+..+. +..... ..
T Consensus 15 tleelk~~ik~~l~-----~~~~~~~~~~~~~~i~~~L~~~~~~elP~slv~~e~~~~~~~~~~~~~~~~~~------~~ 83 (185)
T d1w26a1 15 SVEGLRAEVRKNME-----RELKSAIRNRVKSQAIEGLVKANDIDVPAALIDSEIDVLRRQAAQRFGGNEKQ------AL 83 (185)
T ss_dssp CHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHTTTTCCTTS------ST
T ss_pred CHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH------HH
T ss_conf 99999999999999-----99999999999999999999757867978999999999999987740012200------02
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 11245546----99999989999999984320355589998644321110011
Q gi|254780396|r 128 GIGDNHFK----QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176 (317)
Q Consensus 128 g~t~~~~~----~~i~~~l~~~~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~ 176 (317)
......++ ..++..++...+.. ..++.+++.++..........++.
T Consensus 84 e~~~~~~~~~A~~~vk~~lil~~Ia~---~e~i~vt~eei~~~i~~~a~~~~~ 133 (185)
T d1w26a1 84 ELPRELFEEQAKRRVVVGLLLGEVIR---TNELKADEERVKGLIEEMASAYED 133 (185)
T ss_dssp TSCGGGTHHHHHHHHHHHHHHHHHHH---HTTCCCCHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 44589999999999999999999998---736878999999999876521598
No 9
>d1zupa1 c.55.3.11 (A:1-301) Hypothetical protein TM1739 {Thermotoga maritima [TaxId: 2336]}
Probab=39.08 E-value=7 Score=15.16 Aligned_cols=46 Identities=13% Similarity=0.230 Sum_probs=30.3
Q ss_pred CCCCCCCCCH---HHCCHHHHHHC-CCCCCCCCCCEEEC-------CEEEEEEEECCC
Q ss_conf 6874675275---56136766511-24578801237638-------948999982235
Q gi|254780396|r 230 SIGKAQYLLE---SDLHPQFQNLL-KKSQNNTTNPYVTQ-------KGVEYIAICDKR 276 (317)
Q Consensus 230 ~~g~lg~~~~---~~l~~~~~~~~-~~~~G~is~pv~t~-------~G~hiikv~~~r 276 (317)
.+|.+|+++. ..++++..+.+ .+++|+-|..+..+ ++|| +++.+..
T Consensus 169 ~~~~vGyVKt~~~~yL~~e~~~ll~~L~~GeRTpif~~g~~~~~~r~swY-VRL~~~~ 225 (301)
T d1zupa1 169 NVGPIGLVKNIGVTELSKEDFKKLRFLKKGKRSKMFVSSRETPLKKVGAY-VKLIDGE 225 (301)
T ss_dssp TTBCEEEECCCSBCCSCHHHHHHGGGCCTTCBCCCEECC----CEEEEEE-EECSSSS
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEE-EECCCCC
T ss_conf 78841678741302389889999986367674540574265663148999-9815888
No 10
>d1t11a1 a.223.1.1 (A:248-376) Trigger factor, C-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=33.69 E-value=10 Score=14.09 Aligned_cols=92 Identities=13% Similarity=0.064 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999864200122344456689999999731----34303567777653112455469999998999999
Q gi|254780396|r 73 EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT----GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148 (317)
Q Consensus 73 ~~~~l~~LI~~~l~~~~a~~~~i~v~~~~i~~~i~~~~~~~----~~~~~~~~~~l~~~g~t~~~~~~~i~~~l~~~~~~ 148 (317)
..+..+..+...++.+......+.+++..|+..+..+..+. +....... ......+++.-...+.+.-++
T Consensus 31 ~~~~~~~~~~~~i~~~L~~~~~~elPe~lv~~e~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Ae~~vK~~lil 104 (129)
T d1t11a1 31 LKQAIKARIKEQAIEGLVKENEIQVPSALIDQEINVLRQQAAQRFGGNVEAAA------QLPRELFEEQAKRRVVVGLLL 104 (129)
T ss_dssp HHHHHHHHHHTTTCTTBCSCCCEEECHHHHHHHHHHHHHHHHHHSSCSHHHHT------TSCGGGTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHH------HHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999986777797999999999999999988500410004------888999999999999999999
Q ss_pred HHHH-HHHCCCCHHHHHHHHHHH
Q ss_conf 9984-320355589998644321
Q gi|254780396|r 149 KNDF-MLKYGNLEMEIPANKQKM 170 (317)
Q Consensus 149 ~~~~-~~~i~~~~~e~~~~~~~~ 170 (317)
.... ..++.+++.++..+....
T Consensus 105 ~~Ia~~e~i~vs~eei~~~i~~~ 127 (129)
T d1t11a1 105 GEVIRTHELKADEEKVKALITEM 127 (129)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99999988998999999999977
Done!