BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780396|ref|YP_003064809.1| peptidyl-prolyl cis-trans
isomerase protein [Candidatus Liberibacter asiaticus str. psy62]
         (317 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254780396|ref|YP_003064809.1| peptidyl-prolyl cis-trans isomerase protein [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040073|gb|ACT56869.1| peptidyl-prolyl cis-trans isomerase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 317

 Score =  157 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 317/317 (100%), Positives = 317/317 (100%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI
Sbjct: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
           ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF
Sbjct: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
           SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI
Sbjct: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES
Sbjct: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240

Query: 241 DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH 300
           DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH
Sbjct: 241 DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH 300

Query: 301 EAEYVKKLRSNAIIHYY 317
           EAEYVKKLRSNAIIHYY
Sbjct: 301 EAEYVKKLRSNAIIHYY 317


>gi|209885477|ref|YP_002289334.1| SurA N- domain family [Oligotropha carboxidovorans OM5]
 gi|209873673|gb|ACI93469.1| SurA N- domain family [Oligotropha carboxidovorans OM5]
          Length = 330

 Score =  154 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/309 (24%), Positives = 131/309 (42%), Gaps = 6/309 (1%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           LS F+  +   F   I   V   S      +  I   +NGE IT  DI +R  L+ L   
Sbjct: 24  LSVFVSRIALAFAAFIILAVTAPSV----QAQGIVVMVNGEPITTYDIEQRTKLITLTTR 79

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
                + A+QELI + LK +E +K G+   ++ V+  F   A+   +S++  +  L  QG
Sbjct: 80  KAPTRQQALQELIDDRLKIKEAKKFGVDLSASDVDSAFAGMAQRMRISSDQLAQVLQAQG 139

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
           +  +  K  L   + W  +V+  F       E ++ A   +  +    E     +   + 
Sbjct: 140 VRPDTMKFRLKADTAWGALVRGRFKQSLLVGERDVQAAVGENPSGERTESYEYHMRPIVL 199

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
                + G V++R K+AE  R R+     +  +    +   SI        +DL P  + 
Sbjct: 200 FVPRGSSGAVEQRKKEAEALRERIQSC-EEATRVFKSLRQASIRDTIVKTSADLPPNLRE 258

Query: 249 LLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
           LL K+     T P VT++G+E +A+C+++    +   K     +    K E     Y++ 
Sbjct: 259 LLDKTPVGRMTAPEVTRQGIEMVALCNRQVTTADTPAKRAARDKLFAQKYEAKSKSYLED 318

Query: 308 LRSNAIIHY 316
           LR  A+I Y
Sbjct: 319 LRKRAMIEY 327


>gi|115525297|ref|YP_782208.1| hypothetical protein RPE_3295 [Rhodopseudomonas palustris BisA53]
 gi|115519244|gb|ABJ07228.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
          Length = 305

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/305 (20%), Positives = 121/305 (39%), Gaps = 2/305 (0%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +  L    +   F ++      +   +  +   +NGE IT  DI +R  L +L       
Sbjct: 1   MIALRLSRLCFAFALLLTTGLSTELRAQSVVVMVNGEPITSYDIDQRSKLTQLSTRKTPP 60

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            +  ++ELI E +K +E +K GI      ++  F        +S E  +  L   GI  +
Sbjct: 61  RQEVIEELINEKVKIKEGKKFGIDPSGADIDSSFANMGSRMRMSPEQLTQTLANSGIRPD 120

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             K  +  + +W  +V+  F       E +I A            +  +     +   + 
Sbjct: 121 TLKHRMRAEMVWTSLVRGRFKDSLLVGEKDIQAALGDSDKPAGESFEYQMRPVVLIVPRN 180

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
                 + R+K+AE  R R+ + C +       + + +I        +DL P  + LL K
Sbjct: 181 AAPASREARMKEAEALRARV-QTCEEANALFKSMPNAAIRATVSKTSADLPPSLRELLDK 239

Query: 253 SQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           +   + T P  T++GVE +A+C ++    +   K  +  +    K E     Y++ +R  
Sbjct: 240 TPIGHLTAPEATKQGVEMVALCSRKPTTADTPKKREIREKMFAEKFEAKSKAYLRDVRKA 299

Query: 312 AIIHY 316
           A++ Y
Sbjct: 300 AMVEY 304


>gi|90423813|ref|YP_532183.1| hypothetical protein RPC_2310 [Rhodopseudomonas palustris BisB18]
 gi|90105827|gb|ABD87864.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 320

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 63/305 (20%), Positives = 124/305 (40%), Gaps = 4/305 (1%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           ++L+       +  +   +       +  +   +NGE IT+ DI +R  L+ L       
Sbjct: 18  LRLIRVALCCAVAMLA--ICLGPDLHAQSVAVMVNGEPITNYDIEQRSKLMALSTHKSPS 75

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            +  + ELI E +K +E +K GI      ++  F        +SAE  +  L+ QGI   
Sbjct: 76  RQQVIDELINEKVKIREGKKFGIDPSVADIDGSFAGMGSRMRMSAEQLTKSLEGQGIRPE 135

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             KQ +  + +W  +V+  F       E E+ A        +   +  +     +   + 
Sbjct: 136 TLKQRMRAEMVWTSLVRGRFKDSLLVGEKEVRAALGGDDKSSGESFEYQMRPIVLIVPRN 195

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
                 + R+K+AE  R R+     + +     + + +I        +D+    + +L K
Sbjct: 196 AAPSARELRMKEAEALRSRVQSCA-EADDLFKSMQNAAIRDTVTKTSADIPGVLREVLDK 254

Query: 253 SQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           +   + T P VT++GVE +A+C ++    +   K  +  +    K E     Y++ +R  
Sbjct: 255 TPIGHLTAPEVTKQGVEMVALCSRKPTTADTPKKREIRDKMFADKFEAKSKSYLRDVRKA 314

Query: 312 AIIHY 316
           A+I Y
Sbjct: 315 AMIEY 319


>gi|229592952|ref|YP_002875071.1| putative chaperone [Pseudomonas fluorescens SBW25]
 gi|229364818|emb|CAY52844.1| putative chaperone [Pseudomonas fluorescens SBW25]
          Length = 444

 Score =  149 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 45/311 (14%), Positives = 100/311 (32%), Gaps = 17/311 (5%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGE 71
            VL    +    ++ +     ++   ++ +VI    + +R+  ++               
Sbjct: 12  LVLGALLLGTASAHAAVQQLDKVVAIVDNDVIMQSQLDQRVKEVQQTIAKRGGGVPPTSV 71

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           L++  ++ LIVE L+ Q  ++SGI      +N      A+   +S + F + L   G+  
Sbjct: 72  LDQQVLERLIVENLQLQIGDRSGIRISDEELNQAVGTIAQRNNMSIDQFRAALAHDGLSY 131

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
              +  +  + I   V +     +    E E+                +      IP   
Sbjct: 132 EDARDQIRREMIISRVRQRRVAERVQVSEQEVKNFLASDLGKMQLSEELHLANILIPTPD 191

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLE---KFASKIHDVSIGKAQYLLESDLHPQF-Q 247
             N   +       +    RL    +  +     +   + +  G   +   + L P F +
Sbjct: 192 SANSEQLNAAAAKTQAIYDRLKAGADFAQMAIAQSGSDNALEGGDMGWRKAAQLPPPFDR 251

Query: 248 NLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG---EIALKAYLSAQNTPTKIEKHEAEY 304
            L        T P  T  G   + + +KR       +     ++  + +  + E    E 
Sbjct: 252 ELSAMEVGGITQPARTPGGFIILKLLEKRGGETSLKDEVHVRHILVKPSEIRTEAQTKEL 311

Query: 305 VKKLRSNAIIH 315
            +K+     I 
Sbjct: 312 AQKIYDR--IE 320



 Score = 90.9 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 15/139 (10%), Positives = 48/139 (34%), Gaps = 3/139 (2%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
                 +  ++++ +   ++  +   +            + F+      ++ G   ++  
Sbjct: 291 HVRHILVKPSEIRTEAQTKELAQKIYDRIESGEDFATLAKSFSEDPGSALNGGDLNWIDP 350

Query: 240 SDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-YLSAQNTPTKI 297
             L P+FQ ++    Q   + P+ TQ G   + +  +R        +           K 
Sbjct: 351 KALVPEFQQVMADTPQGVLSKPFKTQYGWHVLEVLGRRATDNTNQAREQQALNVLRNRKY 410

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           ++    +++++R  A +  
Sbjct: 411 DEELQTWLRQIRDEAYVEN 429


>gi|92113046|ref|YP_572974.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chromohalobacter
           salexigens DSM 3043]
 gi|122070642|sp|Q1QZ33|SURA_CHRSD RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|91796136|gb|ABE58275.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chromohalobacter
           salexigens DSM 3043]
          Length = 435

 Score =  148 bits (373), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 42/315 (13%), Positives = 112/315 (35%), Gaps = 16/315 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK----- 67
           ++       +++  + P ++        RI   +N + I    +  R+  ++ Q      
Sbjct: 3   LRSFAFLGFMLLVAMAPSMASAQPQPLDRIVAVVNKDAIMQSRLEDRVTQVRRQMASRNV 62

Query: 68  ---INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                 +L +  +  +I+E ++ Q  E++ ++ D   +N      A + G+S ++F+  L
Sbjct: 63  PAPNEADLRRQVLDRMILEQIQLQMAERANLSIDDTQLNATVRGIAEDNGMSMDEFADAL 122

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           ++ G+     ++ +  + +   V ++    +    + E+     +        Y +  +L
Sbjct: 123 EEDGMSLASMREQVRREMLLRQVQQSQVASRVNVTDREVERYLDQQGETADTAYHLAHIL 182

Query: 185 FSIPDNKLQNQ-GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
            S+P++    Q    Q +++D                  +     +S G   +     L 
Sbjct: 183 VSVPESPTPEQVEQAQAKVRDLYRQLQNGANFAQLATAESDGQQALSGGDLGWRRGDQLP 242

Query: 244 PQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEI---ALKAYLSAQNT---PTK 296
             F +++   S    + P  +  G   + + D R   GE      +  +        P +
Sbjct: 243 SLFADVVPTLSNGEVSEPIRSPSGFHLVKLIDTRGQQGEQKRVVTENRVRHILIGTNPNR 302

Query: 297 IEKHEAEYVKKLRSN 311
            ++      + +R  
Sbjct: 303 NDQQAEALARDIRQR 317



 Score = 93.6 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 46/138 (33%), Gaps = 3/138 (2%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLL 238
            R     I  N  +N    +   +D  +            ++++      +  G+  +  
Sbjct: 289 NRVRHILIGTNPNRNDQQAEALARDIRQRIANGESFAALAQEYSDDDGSALDGGELGWTR 348

Query: 239 ESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPTK 296
              + P F++ +K       + P  ++ G   I + D+R         +  +       K
Sbjct: 349 PGQMVPAFEDAVKALDVGELSQPVRSRFGYHVIELEDRRRQDVTRDAQREQIRQTLFQRK 408

Query: 297 IEKHEAEYVKKLRSNAII 314
           +      + +++RS A I
Sbjct: 409 VSDEMEAWTQEIRSGAYI 426


>gi|108758581|ref|YP_628738.1| peptidylprolyl cis-trans isomerase [Myxococcus xanthus DK 1622]
 gi|108462461|gb|ABF87646.1| peptidylprolyl cis-trans isomerase [Myxococcus xanthus DK 1622]
          Length = 325

 Score =  148 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 99/304 (32%), Gaps = 18/304 (5%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI----------AVQ 78
                    +  ++   +N ++I   ++ +R A    +  + +  K           A+ 
Sbjct: 18  GSGGAAHAELVDKVAAVVNRDIIALSEVQQRAAPEMARVNDPDPRKRGEQRLQLMKTALD 77

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG-LSAEDFSSFLDKQGIGDNHFKQY 137
            LI E L + EI + GIT     V+       +         F   L  +G+    ++  
Sbjct: 78  TLIGEKLMESEIAQLGITASEAEVDELVADVRQQNNITDPAQFEQLLLGEGLTMATYRDM 137

Query: 138 LAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE--YLIRTVLFSIPDNKLQNQ 195
           +  + +   +++     +    E ++ A   +   +   +     R +L  +       Q
Sbjct: 138 MRKRILRDRLLRMKVGPQVKITEEDLKAAYTQYTRMESGDSEVHARHILVQVDAKATAEQ 197

Query: 196 GFVQKRIKDAEESRLR--LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK- 252
               K+  +A  +  R       +     +        G   +     + P F+      
Sbjct: 198 VEAAKKRAEAIATEARRPGMDFASLARARSEGPSAADGGDLGWFKRGVMVPAFEKAAFGL 257

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
            +   + P  T  G   + + ++R         ++  L  +    K EK   +YV++LR 
Sbjct: 258 PEGGVSEPVRTNFGWHVLKVEERRTVAAASYEEMRPKLEGKLLQEKTEKFLDQYVQELRQ 317

Query: 311 NAII 314
            A +
Sbjct: 318 KANV 321


>gi|85716332|ref|ZP_01047305.1| hypothetical protein NB311A_19130 [Nitrobacter sp. Nb-311A]
 gi|85696848|gb|EAQ34733.1| hypothetical protein NB311A_19130 [Nitrobacter sp. Nb-311A]
          Length = 319

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 62/305 (20%), Positives = 126/305 (41%), Gaps = 2/305 (0%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
            L   +  L +F  +  VS+ S   +  +   +NGE IT  DI +R  L+K+        
Sbjct: 5   SLFRPFSRLAVFAFLSFVSFNSPLSAQSVAVMVNGEPITTFDIEQRSRLIKISTHKSASR 64

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           +  + ELI E +K +E +K G+   S  ++  +       G+S E  +  L  QG+  + 
Sbjct: 65  QEVIDELIGEKVKIKEAKKFGVNPTSADIDRAYANMGARMGMSPEQLTKSLASQGVRPDT 124

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY-LIRTVLFSIPDNKL 192
            K  L    +W  +V+  F       + ++    +       +   +   +   +     
Sbjct: 125 IKARLRADLVWGSLVRGRFKESLLVSDRDVNEALKNSGEDQSKIEGVEYQMRPVVLIVPR 184

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
                V +  ++   S     + C    +    + + ++        +DL P  ++LL K
Sbjct: 185 GAAASVMEARRNEANSLRERVQSCADAIRIVKAMRNATLRDRVTKTSADLPPPLRDLLDK 244

Query: 253 SQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           +   + T P +T++G+E +A+C+K+    +   K  +  +    K EK    Y++ +R +
Sbjct: 245 TPVGHLTPPEITRQGIEMVAVCEKKVTSVDTPKKREIREKMFADKYEKRSKSYLENIRRS 304

Query: 312 AIIHY 316
           A+I Y
Sbjct: 305 AMIEY 309


>gi|92117866|ref|YP_577595.1| hypothetical protein Nham_2343 [Nitrobacter hamburgensis X14]
 gi|91800760|gb|ABE63135.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 319

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/304 (19%), Positives = 124/304 (40%), Gaps = 2/304 (0%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           LL  +  L +F ++      +   +  +   +NGE IT  DI +R  L+++        +
Sbjct: 6   LLRAFCHLALFAVLSFACLNAPLHAQSVAVMVNGEPITSFDIEQRSRLIQISTHKTPTRQ 65

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             + ELI E +K +E +K G+   S  ++  +        +S E  +  L  QG+  +  
Sbjct: 66  QVIDELINEKVKVKEAKKFGVNPTSADIDQQYASMGARMRMSPEQLTKSLASQGVRPDTI 125

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY-LIRTVLFSIPDNKLQ 193
           K  L    +W  +V+  F       + ++    +       +       +   +      
Sbjct: 126 KARLKADLVWGSLVRGRFKDSLLVSDRDVNEALRNSGEDQSKTEGFEYQMRPVVLVVPRG 185

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS 253
               V +  +   ++     + C    +    + + +I +      +DL P  ++LL K+
Sbjct: 186 AAASVMESRRKEADALRERVQSCADATRIFKAMRNATIRETVVKTSADLPPPIRDLLDKT 245

Query: 254 Q-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
              + T P +T++GVE +AIC K+    +   K  +  +    K EK   +Y++ +R +A
Sbjct: 246 PVGHLTPPEITRQGVEMVAICGKKATSVDTPKKKEIREKMFAEKYEKKSKDYLEDIRKSA 305

Query: 313 IIHY 316
           +I Y
Sbjct: 306 MIEY 309


>gi|312963417|ref|ZP_07777899.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas fluorescens
           WH6]
 gi|311282223|gb|EFQ60822.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas fluorescens
           WH6]
          Length = 444

 Score =  147 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/309 (14%), Positives = 99/309 (32%), Gaps = 15/309 (4%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGE 71
            VL    +    ++ +     ++   ++ +VI    + +R+  ++               
Sbjct: 12  LVLGALFLGAASAHAAVQQLDKVVAIVDNDVIMQSQLDQRVKEVQQTIAKRGGGVPPTSV 71

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           L++  ++ LIVE L+ Q  E+SGI      +N      A+   +S + F + L   G+  
Sbjct: 72  LDQQVLERLIVENLQLQIGERSGIRISDEELNQAVGTIAQRNNMSIDQFRAALAHDGLSY 131

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
              +  +  + I   V +     +    E E+                +      IP   
Sbjct: 132 EDARDQIRREMIISRVRQRRVAERVQVSEQEVKNFLASDLGKMQLSEELHLANILIPTPD 191

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLE---KFASKIHDVSIGKAQYLLESDLHPQF-Q 247
             N   +       +    RL    +  +     +   + +  G   +   + L P F +
Sbjct: 192 SANSEQLNAAAAKTQAIYERLKAGADFAQMAIAQSGSDNALEGGDMGWRKAAQLPPPFDR 251

Query: 248 NLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG---EIALKAYLSAQNTPTKIEKHEAEY 304
            L        T P  T  G   + + ++R       +     ++  + +  + E    E 
Sbjct: 252 ELSAMEVGGITQPARTPGGFIILKLLERRGGETSLKDEVHVRHILVKPSEIRSEAQTKEL 311

Query: 305 VKKLRSNAI 313
            +K+     
Sbjct: 312 AQKIYDRIQ 320



 Score = 89.7 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 15/139 (10%), Positives = 50/139 (35%), Gaps = 3/139 (2%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
                 +  ++++++   ++  +   +            + F+      ++ G   ++  
Sbjct: 291 HVRHILVKPSEIRSEAQTKELAQKIYDRIQSGEDFATLAKSFSEDPGSALNGGDLNWIDP 350

Query: 240 SDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-YLSAQNTPTKI 297
             L P+FQ ++    Q   + P+ TQ G   + +  +R        +     +     K 
Sbjct: 351 KALVPEFQQVMADTPQGVLSKPFKTQYGWHVLEVLGRRATDNTSQAREQQALSVLRNRKY 410

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           ++    +++++R  A +  
Sbjct: 411 DEELQTWLRQIRDEAYVEN 429


>gi|327479275|gb|AEA82585.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas stutzeri DSM
           4166]
          Length = 435

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 54/322 (16%), Positives = 117/322 (36%), Gaps = 15/322 (4%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           + T LSDF++ L    +L+    +   +        R+   ++ +VI    + +RI  ++
Sbjct: 1   MKTKLSDFLRPLLLGTLLLGSATLTTAALAQVQPLDRVVAIVDNDVIMQSQLDQRIQEVR 60

Query: 65  LQK--------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
                       N  L++  ++ LI E L+ Q  E+SG+      +N      A+   ++
Sbjct: 61  QTIEKRGAEVPPNEVLQQQVLERLISENLQLQIGERSGVRISDEELNQAMATIAQRNNMT 120

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV- 175
            E F   L + G+     ++ +  + I   V +     +    E E+             
Sbjct: 121 PEQFREALARDGLSPETAREQIRREMIISRVRQRRVAERIQVSEQEVQNFLASDLGKLQL 180

Query: 176 -REYLIRTVLFSIPDNKLQNQGFVQKRI-KDAEESRLRLPKDCNKLEKFASKIHDVSIGK 233
             EY +  +L  +P+          +R+ +D  E   +           ++  + +  G 
Sbjct: 181 SEEYHLANILIPVPEAADSATIQAAERMARDTHEQLQKGADFARLAVARSASENALEGGD 240

Query: 234 AQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG---EIALKAYLS 289
             +   + L P F + + + +    T P  T  G   + + +KR       +     ++ 
Sbjct: 241 MGWRKAAQLPPPFDSLVRELAVGEFTEPVRTPPGFIIVKVLEKRGGETQVRDEVHVRHIL 300

Query: 290 AQNTPTKIEKHEAEYVKKLRSN 311
            + +  + E      VK+LR  
Sbjct: 301 IKPSAIRSEDEARLLVKRLRER 322



 Score = 90.5 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 14/139 (10%), Positives = 48/139 (34%), Gaps = 3/139 (2%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
                 I  + ++++   +  +K   E  L           F+      ++ G   ++  
Sbjct: 295 HVRHILIKPSAIRSEDEARLLVKRLRERILAGEDFAELARNFSEDPGSALNGGDLNWIDP 354

Query: 240 SDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-YLSAQNTPTKI 297
           + L P+F+ ++   +    + P+ +  G   + +  +R        +           + 
Sbjct: 355 NSLVPEFRQVMANTASGELSQPFQSPYGWHILEVLGRRATDTSEEFREQQARNLLRNRRY 414

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           ++    +++++R  A +  
Sbjct: 415 DEELQAWLRQIRDEAYVEI 433


>gi|91977437|ref|YP_570096.1| hypothetical protein RPD_2969 [Rhodopseudomonas palustris BisB5]
 gi|91683893|gb|ABE40195.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 309

 Score =  146 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 63/306 (20%), Positives = 128/306 (41%), Gaps = 6/306 (1%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K L     L +FC V +      A +  +   +NGE IT+ DI +R  L +L +      
Sbjct: 4   KFLFRILGLALFCTVTVGGGLGVATAQSVAVMVNGEPITNFDIEQRSKLDRLSRA-SRTR 62

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           +  + ELI E +K +E +K G++   + +   F   +    +S +  +  L  QGI    
Sbjct: 63  QQVLDELIDEKVKIREGKKYGVSPSDSDIESSFSTMSSRMRMSPDQMTKMLSAQGIRPET 122

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV---REYLIRTVLFSIPDN 190
            K  +  + +W  +V+  F       E +I A               +  +     +  +
Sbjct: 123 LKSKIKAEMVWASLVRGRFKDSLLVGEKDIQAQLGAKGGDEPATTESFEYQLRPVVLIVS 182

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL 250
           +  +   ++ R K+AE  R R+    +  ++    + + +I        +DL    + +L
Sbjct: 183 RGSDSSALEARRKEAESLRSRVQSCAD-ADRIFKALPNTAIRSTVVKTSADLPQALREIL 241

Query: 251 KKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
            K+     T P  T++G+E +A+C ++    +   K  +  +    K +    EY++++R
Sbjct: 242 DKTPVGQMTAPEATKQGIEMVALCSRKPTTADTPKKREIREKLFAEKFQAKSKEYLREVR 301

Query: 310 SNAIIH 315
           + A+I 
Sbjct: 302 NAAMIE 307


>gi|330812129|ref|YP_004356591.1| peptidylprolyl isomerase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380237|gb|AEA71587.1| putative peptidylprolyl isomerase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 438

 Score =  146 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/310 (14%), Positives = 109/310 (35%), Gaps = 17/310 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL--------QKINGEL 72
           +++    +   +  +     ++   ++ +V+    + +R+  ++         Q   G L
Sbjct: 12  LMLGALFLGTAANAAVQSIDKVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGQPPPGVL 71

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           ++  ++ LIVE L+ Q  E+SGI      +N      A+   +S + F + L + G+   
Sbjct: 72  DQQVLERLIVENLQLQIGERSGIRITDEELNQAVGTIAQRNNMSIDQFRAALARDGLSYE 131

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             +  +  + +   V +     +    E E+                +      IP  + 
Sbjct: 132 DARDQIRREMVISRVRQRRVAERIQVSEQEVKNFLASDLGKMQLSEELHLANILIPTPES 191

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            N   +Q   + A +   +L +  +        +   + +  G   +   + L P F + 
Sbjct: 192 ANSEAIQSAYRQAMDVYQQLKQGADFGQMAIAKSGSDNALEGGDMGWRKPAQLPPPFDRE 251

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG---EIALKAYLSAQNTPTKIEKHEAEYV 305
           L   +  + T P  T  G   + + +KR  G    +     ++  + +  + E       
Sbjct: 252 LSAMAVGDITQPARTPGGFIILKVLEKRGGGTQVRDEVHVRHILIKPSEIRSEAETKRLA 311

Query: 306 KKLRSNAIIH 315
           +KL     I 
Sbjct: 312 EKLYDR--IE 319



 Score = 91.7 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 13/139 (9%), Positives = 49/139 (35%), Gaps = 3/139 (2%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
                 I  ++++++   ++  +   +            + F+      ++ G   ++  
Sbjct: 290 HVRHILIKPSEIRSEAETKRLAEKLYDRIEAGEDFAELAKSFSEDPGSALNGGDLNWVDP 349

Query: 240 SDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-YLSAQNTPTKI 297
           + L P+F+ ++    Q   + P+ +  G   + +  +R        +           K 
Sbjct: 350 NALVPEFRQVMADTPQGQLSKPFKSPYGWHVLEVLGRRATDSTTQAREQQAMTVLRNRKY 409

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           ++    +++++R  A +  
Sbjct: 410 DEELQTWLRQIRDEAYVEI 428


>gi|257092441|ref|YP_003166082.1| SurA domain-containing protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044965|gb|ACV34153.1| SurA domain protein [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 436

 Score =  146 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/315 (14%), Positives = 94/315 (29%), Gaps = 16/315 (5%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING---- 70
           LL +  V ++                RI   +N EVIT  ++  R+     Q        
Sbjct: 9   LLMSCLVGVVLAQTASRPLAQPIPVDRIVAVVNDEVITLHELRTRLDGALAQLQRQGTQL 68

Query: 71  ----ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
                LE+  ++ L+++ ++ Q+    G+  D   +     + A    +S   F + L+K
Sbjct: 69  PPRDVLERQMLERLVIDKVQLQQARDMGVRVDDAQLEQALQRIAAGNKMSLAQFRAALEK 128

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
            GI    F++ +  +     V + +   K    E EI                       
Sbjct: 129 DGIAFASFREEIRGEMTIARVREREVESKIFISEGEIDNYLAGASGQGGAVEEFNLAHIL 188

Query: 187 IPDNKLQNQGFVQKRIKDAE---ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
           +   +  +   +QK     E   E   +  +       ++     +  G   +     L 
Sbjct: 189 LRSPESASPEQIQKLRAKGEQVAERVRKGEEFAQLAAAYSDAPDGLKGGDLGWRSLDRLP 248

Query: 244 PQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRD----LGGEIALKAYLSAQNTPTKIE 298
           P F +          +    +  G   I +  KR        +     ++  +      E
Sbjct: 249 PLFAEAAATLKVGEVSPLLRSSNGFHLIKLVAKRGGGTLAAVQQTHARHILIKVNEVVSE 308

Query: 299 KHEAEYVKKLRSNAI 313
                 ++ LR    
Sbjct: 309 SEARHKLEGLRERIK 323



 Score = 99.0 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 15/139 (10%), Positives = 45/139 (32%), Gaps = 2/139 (1%)

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
                   I  N++ ++   + +++   E            + F+        G   ++ 
Sbjct: 292 QTHARHILIKVNEVVSESEARHKLEGLRERIKHGESFAELAKLFSQDGSATKGGDLGWVY 351

Query: 239 ESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTK 296
             D  P+F+  +   +    + P  +  G   I + ++R        +           K
Sbjct: 352 PGDTVPEFERAMNLLAPGEVSEPVQSPFGFHLIEVLERRVQDVSSDRQRAGARQVLRERK 411

Query: 297 IEKHEAEYVKKLRSNAIIH 315
            ++   +++++ R  A + 
Sbjct: 412 RDEAYQDWLRQTRDRAYVE 430


>gi|56476034|ref|YP_157623.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aromatoleum
           aromaticum EbN1]
 gi|56312077|emb|CAI06722.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aromatoleum
           aromaticum EbN1]
          Length = 454

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 40/327 (12%), Positives = 104/327 (31%), Gaps = 21/327 (6%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIV----SYKSWAMSSRIRTTINGEVITDGDISKRIA 61
             +L      L+      + C   +     +         I   +N EVIT  ++ +R+ 
Sbjct: 13  RIALRRISSRLSLVLFAALSCATALFPAHAANPRSVEVDHIAAVVNNEVITARELRERVE 72

Query: 62  LLKLQKING--------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
               Q             LE+  ++ L++E  + Q   ++ +  D  T+     + A + 
Sbjct: 73  QAIHQLNRQGTPQPPADVLERQLLERLVLERAQLQLARETSLQVDEATLERAIARIAESN 132

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
            L+     + L+K G+  + F+  +  + +   + + +   +    + E+        + 
Sbjct: 133 RLTIAQLQAALEKDGVSWSRFRDNIRTEILLTRLREREVDNRIVVTDAEVDNFLANNADA 192

Query: 174 TVREYLIRTVLFSIPDN--KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
              E      +          Q    +  R + A++              ++     ++ 
Sbjct: 193 LSGEEFELAHILIRVPEAATQQQMAGLVARAETAKQRLNSGDDFARVAASYSDAPDAMNG 252

Query: 232 GKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR------DLGGEIAL 284
           G   +     L P F + + + S  + +    +  G+  + + D+R          E   
Sbjct: 253 GALGWRSRDRLPPLFAEAVRELSPGSVSPVLRSSAGLHIVKLLDRRGGAAAGPQQLEQTR 312

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             ++  + +    +      +  LR  
Sbjct: 313 ARHILIRTSEILNDSEAESRLLGLRER 339



 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/282 (9%), Positives = 85/282 (30%), Gaps = 14/282 (4%)

Query: 46  INGEVI-TDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           ++  ++ TD ++   +A         E E   +  +++   +    ++            
Sbjct: 171 VDNRIVVTDAEVDNFLANNADALSGEEFE---LAHILIRVPEAATQQQMAGLVARAETAK 227

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGN------ 158
             +    +    A  +S   D    G   ++    +  ++ + V+               
Sbjct: 228 QRLNSGDDFARVAASYSDAPDAMNGGALGWRSRDRLPPLFAEAVRELSPGSVSPVLRSSA 287

Query: 159 --LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
               +++   +        +    R     I  +++ N    + R+    E  +      
Sbjct: 288 GLHIVKLLDRRGGAAAGPQQLEQTRARHILIRTSEILNDSEAESRLLGLRERVVNGASFA 347

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK 275
              +  ++ +     G   +L   D  P+F+  +        + P  +  G   I +  +
Sbjct: 348 ELAKAHSADLSSAKGGDLGWLSPGDTVPEFERTMNALKPGEVSAPVRSPFGWHLIQVEAR 407

Query: 276 R-DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           R     +   +          K ++   +++++LR    + Y
Sbjct: 408 RLQDVSDERKRNAARNALRERKADEAFEDWLRQLRDRTYVEY 449


>gi|122070617|sp|Q5P7I9|SURA_AZOSE RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
          Length = 439

 Score =  145 bits (366), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 40/324 (12%), Positives = 109/324 (33%), Gaps = 25/324 (7%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMS--------SRIRTTINGEVITDGDISKRIALLK 64
           ++ +++   L++F  +   +    A +          I   +N EVIT  ++ +R+    
Sbjct: 1   MRRISSRLSLVLFAALSCATALFPAHAANPRSVEVDHIAAVVNNEVITARELRERVEQAI 60

Query: 65  LQKING--------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            Q             LE+  ++ L++E  + Q   ++ +  D  T+     + A +  L+
Sbjct: 61  HQLNRQGTPQPPADVLERQLLERLVLERAQLQLARETSLQVDEATLERAIARIAESNRLT 120

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
                + L+K G+  + F+  +  + +   + + +   +    + E+        +    
Sbjct: 121 IAQLQAALEKDGVSWSRFRDNIRTEILLTRLREREVDNRIVVTDAEVDNFLANNADALSG 180

Query: 177 EYLIRTVLFSIPDN--KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKA 234
           E      +          Q    +  R + A++              ++     ++ G  
Sbjct: 181 EEFELAHILIRVPEAATQQQMAGLVARAETAKQRLNSGDDFARVAASYSDAPDAMNGGAL 240

Query: 235 QYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR------DLGGEIALKAY 287
            +     L P F + + + S  + +    +  G+  + + D+R          E     +
Sbjct: 241 GWRSRDRLPPLFAEAVRELSPGSVSPVLRSSAGLHIVKLLDRRGGAAAGPQQLEQTRARH 300

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSN 311
           +  + +    +      +  LR  
Sbjct: 301 ILIRTSEILNDSEAESRLLGLRER 324



 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/282 (9%), Positives = 85/282 (30%), Gaps = 14/282 (4%)

Query: 46  INGEVI-TDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           ++  ++ TD ++   +A         E E   +  +++   +    ++            
Sbjct: 156 VDNRIVVTDAEVDNFLANNADALSGEEFE---LAHILIRVPEAATQQQMAGLVARAETAK 212

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGN------ 158
             +    +    A  +S   D    G   ++    +  ++ + V+               
Sbjct: 213 QRLNSGDDFARVAASYSDAPDAMNGGALGWRSRDRLPPLFAEAVRELSPGSVSPVLRSSA 272

Query: 159 --LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
               +++   +        +    R     I  +++ N    + R+    E  +      
Sbjct: 273 GLHIVKLLDRRGGAAAGPQQLEQTRARHILIRTSEILNDSEAESRLLGLRERVVNGASFA 332

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK 275
              +  ++ +     G   +L   D  P+F+  +        + P  +  G   I +  +
Sbjct: 333 ELAKAHSADLSSAKGGDLGWLSPGDTVPEFERTMNALKPGEVSAPVRSPFGWHLIQVEAR 392

Query: 276 R-DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           R     +   +          K ++   +++++LR    + Y
Sbjct: 393 RLQDVSDERKRNAARNALRERKADEAFEDWLRQLRDRTYVEY 434


>gi|322417707|ref|YP_004196930.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
 gi|320124094|gb|ADW11654.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
          Length = 319

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 48/317 (15%), Positives = 99/317 (31%), Gaps = 14/317 (4%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +  +     L+    V   ++      S I   +N EVIT  D+ +  AL++ +      
Sbjct: 1   MAKIIMACTLLALLAVT-PTFAHAKPISGIAAIVNDEVITSTDVDREYALMQKEAEKLPA 59

Query: 72  -----LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
                L+  A+  L+ + L +Q+I +  I      V        +   L+ E     L  
Sbjct: 60  SEKMGLKSAALNRLVDKKLVEQKIRELDIKVSDEDVRLAIEDVKKQNNLTQEALEQALAT 119

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
           QG+    ++  L  Q     ++  +   K    E E+    +  +               
Sbjct: 120 QGLTFAQYQVQLKEQLERMRLMSQEVRSKIQVGEREMREYYESHRADYGGSETFHARHIF 179

Query: 187 IPDNKLQNQGFVQKRIK---DAEESRLRLPKDCNKLEKFASKIHD-VSIGKAQYLLESDL 242
              +   +     K  K   +               +K++         G       SD+
Sbjct: 180 FKVDPKASAEDAAKAEKLAGEVLAKARAGEDFAELAKKYSQDPSAAKDGGDLGTFKRSDM 239

Query: 243 -HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEK 299
                  +      + ++   +  G+  I +  K          +K  +  Q    K ++
Sbjct: 240 LPEIGDTVAAMKPGDVSSIVSSPAGLHIIKLEQKSQEKGRSFEEVKDSIEEQLYKKKSDE 299

Query: 300 HEAEYVKKLRSNAIIHY 316
              ++VK+LR+ A I  
Sbjct: 300 RFNQWVKELRNAASIDI 316


>gi|119899176|ref|YP_934389.1| putative peptidyl-prolyl cis-trans isomerase [Azoarcus sp. BH72]
 gi|119671589|emb|CAL95502.1| putative peptidyl-prolyl cis-trans isomerase [Azoarcus sp. BH72]
          Length = 439

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/313 (12%), Positives = 94/313 (30%), Gaps = 17/313 (5%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING----- 70
           L    V      +P+ +        RI   +N EVIT   +  R+     Q         
Sbjct: 11  LFVALVACSALALPVRAAVQPVAVDRIIAVVNNEVITAVQLRDRVDQTTRQLQRQGVQLP 70

Query: 71  ---ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
               LE+  ++ LIVE  + Q    S +  D  T+     + A N  ++     + L++ 
Sbjct: 71  PADVLERQLLERLIVERAQLQLARDSSLRVDDATLERAIGRIAENNKMNTTQLRAALERD 130

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
           G+  + F+  +  + +   + + +   K    + E+        +    E      +   
Sbjct: 131 GVAWDRFRNEIRTEILLSRLREREVDAKIVVTDAEVDNFLTSNPDAFSGEEFHVAHILLR 190

Query: 188 PDNKL--QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ 245
                  +    +++R                     +     +S G   +     L   
Sbjct: 191 APEGATPEQIDRLRQRADTVINRLRNGEDFARVAADSSDAPDGISGGDLGWRQRDRLPAL 250

Query: 246 FQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR------DLGGEIALKAYLSAQNTPTKIE 298
           + + ++       +    +  G+  + + D+R          E     ++  + +    +
Sbjct: 251 YSDAVRDLRPGELSPLMRSAAGLHLVKLVDRRGGAAAGPQRLEQTRARHILIKTSAVLSD 310

Query: 299 KHEAEYVKKLRSN 311
                 +  LR  
Sbjct: 311 AEAEARLLGLRER 323



 Score =  109 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 42/137 (30%), Gaps = 2/137 (1%)

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             +       L +     + +   E             +  ++ +     G   ++   D
Sbjct: 298 RHILIKTSAVLSDAEAEARLLGLRERVVAGGADFGELAKASSADLSAAKGGDLGWVNPGD 357

Query: 242 LHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-YLSAQNTPTKIEK 299
             P+F+  +        + P  +  G   I + ++R        K           K E+
Sbjct: 358 TVPEFERAMNVLKPGEVSPPVRSPFGWHLIQVLERRQQDVTDERKRMAARNILRERKAEE 417

Query: 300 HEAEYVKKLRSNAIIHY 316
              ++V++LR +  + Y
Sbjct: 418 AYEDWVRQLRDSTYVEY 434


>gi|307719645|ref|YP_003875177.1| PPIC-type PPIASE domain-containing protein [Spirochaeta thermophila
           DSM 6192]
 gi|306533370|gb|ADN02904.1| PPIC-type PPIASE domain protein [Spirochaeta thermophila DSM 6192]
          Length = 336

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/293 (16%), Positives = 99/293 (33%), Gaps = 17/293 (5%)

Query: 41  RIRTTINGEVITDGDISKRIALLKLQKIN----------GELEKIAVQELIVETLKKQEI 90
            +   +NGE +   ++ + +     Q              +L +  +  LI   L  QE 
Sbjct: 45  EVAARVNGEEVPSKEVEREVQRYVAQYQQYGMEVSPEEEQKLREQVLDVLIGRLLLLQEA 104

Query: 91  EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
           ++ G++ D   V     Q+   +G S E F + L + G  +  F++ L+   +   VV  
Sbjct: 105 KRMGLSVDQAQVEAQIEQYKLQSG-SEETFKNILAQAGYTEEEFREELSRAFLLQQVVDE 163

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI---KDAEE 207
                    + E  A   +      +   IR     I  +   ++   +       + +E
Sbjct: 164 KVTKHLSVSDEEARAYYDENPEQFEQPEQIRARHILIRLDPDASKEEEEAAYAKIHEVQE 223

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKG 266
              +          ++      + G   +     + P F+        N  ++   T+ G
Sbjct: 224 KLKQGADFAELARTYSEGPSAPNGGDLGFFGRGQMVPAFEEAAFALEVNQVSDVVRTEYG 283

Query: 267 VEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           +  I + DK++ G      +K  L       K  +     V++L+  A I  Y
Sbjct: 284 LHLIQVTDKQEAGKASFEEVKDQLKEMLLQQKSSEAINALVEELKGKAEIEIY 336


>gi|225023463|ref|ZP_03712655.1| hypothetical protein EIKCOROL_00321 [Eikenella corrodens ATCC
           23834]
 gi|224943812|gb|EEG25021.1| hypothetical protein EIKCOROL_00321 [Eikenella corrodens ATCC
           23834]
          Length = 317

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 109/312 (34%), Gaps = 10/312 (3%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI---- 68
           +K+ T    L +     + S  +      I   +  EVIT  ++ + +A  + Q      
Sbjct: 1   MKMKTLVLALGMSLAFQVASANTVRSVDNIVAVVENEVITQRELDQAVAHTRSQMPRGTQ 60

Query: 69  --NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
               EL++  + +L+ ++L  Q   ++ I      V     + A +   S   F +   +
Sbjct: 61  VSEQELQRQTLMQLVNQSLLVQAGRRNNIQVPDAEVEAEIARIAASRRQSLAQFEAAQAR 120

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV--REYLIRTVL 184
            GI     ++ +    I   V +     +    E EI A   + +   +   +   +T  
Sbjct: 121 FGIDKTALRRQVRDSMIAQRVQQGQTAGEAKVSEDEINAAIARARAQGITLPQATPKTQY 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
            +            Q+  +   ++  R         +++      + G   +L E +  P
Sbjct: 181 HAQHILIASQGERAQRLAQRLAQNAQRGADFSALARQYSQDGSAANGGDLGWLSEGETVP 240

Query: 245 QFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR-DLGGEIALKAYLSAQNTPTKIEKHEA 302
           +F+  ++       + P  TQ G   I + + R     +  ++A +       K +    
Sbjct: 241 EFERAMRGLKPGQVSAPVHTQFGWHVIRLVEARTPNTPDARIRAGVHDAIAAQKTQAAMQ 300

Query: 303 EYVKKLRSNAII 314
             +++L  N+ I
Sbjct: 301 SLLQQLHQNSFI 312


>gi|316933705|ref|YP_004108687.1| SurA domain [Rhodopseudomonas palustris DX-1]
 gi|315601419|gb|ADU43954.1| SurA domain [Rhodopseudomonas palustris DX-1]
          Length = 308

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 62/308 (20%), Positives = 122/308 (39%), Gaps = 4/308 (1%)

Query: 12  FIKLLTTYFVLIIFC--IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN 69
            +  L+   + ++ C     +      + +  I   +NGE IT+ DI +R  L ++   N
Sbjct: 1   MMSKLSLRIIGLVLCCAAATLGLGTGPSQAQSIVVMVNGEPITNFDIEQRSKLNRMSHKN 60

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
               +  + +LI E +K +E +K G+    + ++  F   A    +S    ++ L  QGI
Sbjct: 61  ES-RQQVLDDLIDEKVKIKEGKKYGVNPSDSDIDSSFATMASRMRMSTAQMTNMLAAQGI 119

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV-REYLIRTVLFSIP 188
             +  K  +  + +W  +V+  F       E EI A  +   +      Y  +     + 
Sbjct: 120 RPDTLKSRIKAEMVWGSLVRGRFKDSLQVSEREIQAQLKGNDDSKAVESYEYQLRPIVMI 179

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
            ++      +  R K+AE+ R R+         F +  +    G                
Sbjct: 180 VSRGSGSSSLDTRRKEAEQIRGRITSCAEADRIFKAMPNAAIRGTVVKTSADLPPALRDV 239

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
           L K    + T P VT++GVE +A+C ++    +   K  +  +    K      +Y++++
Sbjct: 240 LDKTPVGHLTAPEVTKQGVEMVALCGRKQSTADTPRKREIREKLFGEKFLAKSKDYLQEV 299

Query: 309 RSNAIIHY 316
           R  A+I Y
Sbjct: 300 RKAAMIEY 307


>gi|254473455|ref|ZP_05086852.1| SurA N-terminal domain family protein [Pseudovibrio sp. JE062]
 gi|211957571|gb|EEA92774.1| SurA N-terminal domain family protein [Pseudovibrio sp. JE062]
          Length = 313

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 73/312 (23%), Positives = 130/312 (41%), Gaps = 12/312 (3%)

Query: 15  LLTTYFVLIIFCIVPIVS-----YKSWAMSSRIRTTINGEVITDGDISKRIALLKL--QK 67
           +  T F   +F    I++       S   +S+I   +NG  IT  ++ +R  L+ L  + 
Sbjct: 1   MKLTRFCASLFVAASILAPVGPMLTSAEAASKIVAVVNGRPITSYELQQRSKLISLTTRA 60

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
            +   ++ A  ELI E LK  E ++ G++   + V+  F   A+   +S   F   L + 
Sbjct: 61  PSSIAKRKAKDELIDEALKLAEAKRVGVSISDSKVDDAFATIAQRVKMSPSQFKQALSQS 120

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI---TVREYLIRTVL 184
           G+     K  L  +  W +VV   F       E ++ A  Q  +N               
Sbjct: 121 GVNPRTLKSRLRAEISWSEVVMQRFRATVRINESDVIAALQGRENKDDSGATSVEYDLQR 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
                 K  ++ F  KR+ + ++ R R      +  + AS +++V +      LE+DL P
Sbjct: 181 IIFVIPKNSSKTFKNKRVSEMKKLRARFTSC-EEGTRLASGLNEVVVRPIGKRLETDLPP 239

Query: 245 QF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAE 303
            F + L + S    T P     G E IA+C K  +  +   ++ +  +    K ++    
Sbjct: 240 AFVKKLNEISIGRVTAPTPVDSGFEMIALCGKETINSDATARSTIEGELRNKKGQQLSRR 299

Query: 304 YVKKLRSNAIIH 315
           Y++ LRSNA+I 
Sbjct: 300 YLRDLRSNAVIE 311


>gi|115375725|ref|ZP_01462979.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stigmatella
           aurantiaca DW4/3-1]
 gi|310825132|ref|YP_003957490.1| peptidylprolyl cis-trans isomerase [Stigmatella aurantiaca DW4/3-1]
 gi|115367288|gb|EAU66269.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stigmatella
           aurantiaca DW4/3-1]
 gi|309398204|gb|ADO75663.1| Peptidylprolyl cis-trans isomerase [Stigmatella aurantiaca DW4/3-1]
          Length = 322

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 52/299 (17%), Positives = 110/299 (36%), Gaps = 19/299 (6%)

Query: 36  WAMSSRIRTTINGEVITDGDISKRIALLKLQKING-----------ELEKIAVQELIVET 84
             +  R+   +N ++IT  ++++R A    +               ++ K ++  LI E 
Sbjct: 21  AELVDRVAAVVNRDIITLSEVNQRAAPELSRLAGEKDPRRRADGRAQILKQSLDVLIAEK 80

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTG-LSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
           L + EI + G+T   + V+       +  G  + E F   L ++G     ++++L+ Q  
Sbjct: 81  LIEAEIRELGMTVSPSEVDEAMADVRKQNGVETPEQFEQLLQREGYTLKSYREFLSKQIA 140

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
              +++     K    E ++ A   +   +   E  +      +  +    Q  V    K
Sbjct: 141 RGRLMQMKVGPKVKVSEEDLKAAYAQYAKLEGGEAEVHARHILVSVDPKATQEQVDAAQK 200

Query: 204 DA----EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT 258
            A    EE+R       +     +        G   +     + P F+       +   +
Sbjct: 201 KAQAIAEEARRPGMDFASLARARSEGPSAEDGGDLGFFRRGVMVPAFEKTAFALKEGEVS 260

Query: 259 NPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            P  T  G   + + ++R   +     L+A L  Q    K EK+  +YV++LR  + + 
Sbjct: 261 EPIRTNFGWHVLKVEERRAVGVAPFEDLRAKLEQQLRQDKTEKYIDQYVQELRQKSSVE 319


>gi|70732935|ref|YP_262706.1| survival protein SurA [Pseudomonas fluorescens Pf-5]
 gi|68347234|gb|AAY94840.1| survival protein SurA [Pseudomonas fluorescens Pf-5]
          Length = 440

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/310 (14%), Positives = 104/310 (33%), Gaps = 17/310 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGEL 72
           +++    +   +  +     ++   ++ +V+    + +R+  ++               L
Sbjct: 14  LMLGALFLSTAASAAVQSIDKVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGVPPTSVL 73

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           E+  ++ LIVE L+ Q  E+SGI      +N      A+   +S E F + L   G+   
Sbjct: 74  EQQVLERLIVENLQLQIGERSGIRITDEELNQAIGTIAQRNSMSIEQFRAALAHDGLSYE 133

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             +  +  + I   V +     +    E E+                +      IP  + 
Sbjct: 134 DARDQVRREMIISRVRQRRVAERIQVSEQEVKNFLASDLGKMQLSEELHLANILIPTPES 193

Query: 193 QNQGFV---QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            N   +    ++  +  +   +           +   + +  G   +   + L P F + 
Sbjct: 194 ANSEAIQSAARQAMEVYQQLKQGADFAQLAIARSGSDNALEGGDMGWRKAAQLPPPFDRE 253

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG---EIALKAYLSAQNTPTKIEKHEAEYV 305
           L   +  + T P  T  G   + + DKR  G    +     ++  + +  + E+      
Sbjct: 254 LSAMAVGDITQPARTPGGFIILKLLDKRGGGNQVRDEVHVRHILIKPSEIRSEEETKRLA 313

Query: 306 KKLRSNAIIH 315
           +KL     I 
Sbjct: 314 QKLYDR--IE 321



 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 13/139 (9%), Positives = 50/139 (35%), Gaps = 3/139 (2%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
                 I  ++++++   ++  +   +            + ++      ++ G   ++  
Sbjct: 292 HVRHILIKPSEIRSEEETKRLAQKLYDRIEAGEDFAELAKSYSEDPGSALNGGDLNWIDP 351

Query: 240 SDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-YLSAQNTPTKI 297
           + L P+F+ ++ K  Q   + P+ +  G   + +  +R        +           K 
Sbjct: 352 NALVPEFREVMAKTPQGQLSKPFKSPYGWHVLEVLGRRATDSTSQAREQQAMTVLRNRKY 411

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           ++    +++++R  A +  
Sbjct: 412 DEELQTWLRQIRDEAYVEI 430


>gi|330878394|gb|EGH12543.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330963847|gb|EGH64107.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 440

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 106/313 (33%), Gaps = 19/313 (6%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   ++    + +      +   ++ +VI    + +R+  ++              +L
Sbjct: 12  LMLGALLLSGAVHAAVQPLDSVVAIVDNDVIMKSQMDQRVREVQQTIAKRGSGVPPAADL 71

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +   +  LI+E L+ Q  E+SGI    + +N      A+   +S + F + L   G+  N
Sbjct: 72  QPQVLDRLILENLQLQMGERSGIRVSDDELNQAIGTIAQRNNMSVDQFRAALAHDGLSYN 131

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             ++ +  + I   V +     +    E E+       +               I     
Sbjct: 132 DAREQVRREMIISRVRQRRVAERIQVSEQEVKNFLASDQGKAQLSEEFHLANILIATPDS 191

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLE---KFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            +   +Q     A+    +L K  +  +     +S  + +  G   +   + L P F   
Sbjct: 192 ASSDAIQAAAVKAKSIYDQLKKGADFAKIAATTSSSENALEGGDMGWRKAAQLPPPFGDM 251

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-----EIALKAYLSAQNTPTKIEKHEAE 303
           L      + T P  T  G   + + +KR   G     +     ++  + +  + E+    
Sbjct: 252 LSSMPIGDVTPPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRSEEATKL 311

Query: 304 YVKKLRSNAIIHY 316
             +K+     I  
Sbjct: 312 LAQKIYER--IEN 322



 Score = 93.2 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 15/149 (10%), Positives = 52/149 (34%), Gaps = 3/149 (2%)

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDV 229
           +        +      I  ++++++   +   +   E            + F+      +
Sbjct: 282 QGQAQMRDEVHVRHILIKPSEIRSEEATKLLAQKIYERIENGEDFATLAKSFSEDPGSAL 341

Query: 230 SIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-Y 287
           + G   ++  + L P+F++++    Q   + P+ T  G   + +  +R        +   
Sbjct: 342 NGGDLNWVDPNSLVPEFRDVMSSTPQGELSKPFKTAYGWHVLEVLGRRATDATGQARDQQ 401

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             +     K ++    +++++R  A +  
Sbjct: 402 ALSVLRNRKYDEELQTWLRQIRDEAYVEI 430


>gi|78224732|ref|YP_386479.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           metallireducens GS-15]
 gi|78195987|gb|ABB33754.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           metallireducens GS-15]
          Length = 333

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 53/319 (16%), Positives = 103/319 (32%), Gaps = 17/319 (5%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--- 71
           ++ T     +  I  + S     + +RI   +N E+IT   + K  A +  +    +   
Sbjct: 1   MIKTLITATLVLIATLPSPSHAEVVNRILAVVNDEIITSYAVEKEKATILKEAERQQPPP 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L++ A+  LI + L +Q++ +  I      V        R   LS E   S L
Sbjct: 61  PPESLVHLDETALNRLIDKKLVEQKVRELDIKVSEEEVRQAIEDVKRQNKLSQESLVSAL 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
             QG+  + +K  +  Q     +V  +   K    E E+    +        E   R   
Sbjct: 121 ANQGLSFDQYKVQIREQLERLRLVSQEVRSKIQVGEREMREYYEANPGRFGGEENFRARN 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVS-IGKAQYLLES 240
                ++      V+K +  A                  + +      +  G      + 
Sbjct: 181 IYFKLDEKMPADQVKKIMTTALTVLHEARDGKDFAELARQHSDDPAAKNTGGDLGTFRKG 240

Query: 241 D-LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKI 297
           D L    ++L+K      ++      G+  + +  +          +KA +       K 
Sbjct: 241 DILPEFEESLIKMKPGEVSDLIYVSGGLHIVKLEARFAGTPKPFEQVKAEVEDILYRKKS 300

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           E+   ++V  LR  A I  
Sbjct: 301 EERFNQWVADLRKGAAIEI 319


>gi|294671290|ref|ZP_06736142.1| hypothetical protein NEIELOOT_02999 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307017|gb|EFE48260.1| hypothetical protein NEIELOOT_02999 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 320

 Score =  143 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 42/315 (13%), Positives = 97/315 (30%), Gaps = 13/315 (4%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK-----LQK 67
           +K        ++ C     S         +       VIT     + +A  +      + 
Sbjct: 1   MKPQKILTAALLACFFQTASAADIKTVDGVAAVAGDSVITMRQFEQAVAQARRLPAAQRP 60

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
              EL +  + +LI ++L  Q  ++ G+      V+      A    +S +   +   K 
Sbjct: 61  PENELRQQVLAQLINQSLIVQAGKRRGLAATQAEVDEAVAHAAAEQKISVDQLYARAAKD 120

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP------ANKQKMKNITVREYLIR 181
           G+     ++  A   +   V +   +      E E+         +             R
Sbjct: 121 GLSKAALRRQTADALVAQKVQQQAILQNARVSEAEVDAALARAQQQGVAIPEGKAPRQYR 180

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
                I   K       +  I        +         +++        G   +  +  
Sbjct: 181 AQHILIKAEKENAVAAAETVINKIRAQAEKGRDFGELARQYSQDGSAPQGGDLGWFGDGM 240

Query: 242 LHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEK 299
           + P+F++ ++K  +   + P  TQ G   I + D R++   E   +  +       K E+
Sbjct: 241 MVPEFESAVQKLKKGQVSRPVRTQFGWHLIKLNDVREVGTPEERRRNTIRQYIMQQKAEQ 300

Query: 300 HEAEYVKKLRSNAII 314
              + +++L  +  +
Sbjct: 301 AAGQLLQQLHESTYV 315


>gi|302130724|ref|ZP_07256714.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           tomato NCPPB 1108]
          Length = 440

 Score =  143 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 105/313 (33%), Gaps = 19/313 (6%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   ++    + +      +   ++ +VI    + +R+  ++              +L
Sbjct: 12  LMLGALLLSGAVHAAVQPLDSVVAIVDNDVIMKSQMDQRVREVQQTIAKRGSGVPPAADL 71

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +   +  LI+E L+ Q  E+SGI    + +N      A+   +S E F + L   G+   
Sbjct: 72  QPQVLDRLILENLQLQMGERSGIRVSDDELNQAIGTIAQRNNMSVEQFRAALAHDGLSYE 131

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             ++ +  + I   V +     +    E E+       +               I     
Sbjct: 132 DAREQVRREMIISRVRQRRVAERIQVSEQEVKNFLASDQGKAQLSEEFHLANILIATPDS 191

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLE---KFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            +   +Q     A+    +L K  +  +     +S  + +  G   +   + L P F   
Sbjct: 192 ASSDAIQAAAVKAKSIYDQLKKGADFAKIAATTSSSENALEGGDMGWRKAAQLPPPFGDM 251

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-----EIALKAYLSAQNTPTKIEKHEAE 303
           L      + T P  T  G   + + +KR   G     +     ++  + +  + E+    
Sbjct: 252 LSSMPIGDVTPPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRSEEATKL 311

Query: 304 YVKKLRSNAIIHY 316
             +K+     I  
Sbjct: 312 LAQKIYER--IEN 322



 Score = 92.8 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 15/149 (10%), Positives = 52/149 (34%), Gaps = 3/149 (2%)

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDV 229
           +        +      I  ++++++   +   +   E            + F+      +
Sbjct: 282 QGQAQMRDEVHVRHILIKPSEIRSEEATKLLAQKIYERIENGEDFATLAKSFSEDPGSAL 341

Query: 230 SIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-Y 287
           + G   ++  + L P+F++++    Q   + P+ T  G   + +  +R        +   
Sbjct: 342 NGGDLNWVDPNSLVPEFRDVMSSTPQGELSKPFKTAYGWHVLEVLGRRATDATGQARDQQ 401

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             +     K ++    +++++R  A +  
Sbjct: 402 ALSVLRNRKYDEELQTWLRQIRDEAYVEI 430


>gi|167031450|ref|YP_001666681.1| SurA domain-containing protein [Pseudomonas putida GB-1]
 gi|166857938|gb|ABY96345.1| SurA domain [Pseudomonas putida GB-1]
          Length = 441

 Score =  143 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/322 (13%), Positives = 110/322 (34%), Gaps = 17/322 (5%)

Query: 9   LSDFIKLL-TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK 67
           ++   KL+     VL+   ++    + +     R+   ++ +V+    + +R+  ++   
Sbjct: 1   MNVKTKLIDRLRPVLLGAALLSGAVHAAVQPLDRVVAIVDNDVVMQSQLDQRVHEVQQTI 60

Query: 68  --------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                     G LE+  ++ LIVE L+ Q  E+SGI      +N      A+  G+S + 
Sbjct: 61  AKRGGGVPPTGALEQQVLERLIVENLQLQIGERSGIRITDEELNQAIGTIAQRNGMSLDQ 120

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
           F + L   G+  +  ++ +  + I   V +     +    E E+                
Sbjct: 121 FRAALAHDGLSFDDAREQVKREMIISRVRQRRVAERIQVSEQEVKNFLNSDMGKMQMSEE 180

Query: 180 IR---TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
            R    ++ +       +     +++ D  +   +           ++  + +  G+  +
Sbjct: 181 YRLANILIPTPEAANSDDIQKAARKVGDVYQQLRQGADFGQMAIANSASENALEGGEMGW 240

Query: 237 LLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGG----EIALKAYLSAQ 291
                L P F  +L        T P     G   + + +KR        +     ++  +
Sbjct: 241 RKAGQLPPDFAKMLSSMPVGEITQPIRIPNGFIILKLEEKRGGSENVLRDEVHVRHILIK 300

Query: 292 NTPTKIEKHEAEYVKKLRSNAI 313
            +  + E    +  ++L     
Sbjct: 301 PSEIRSEAATEQLAERLYDRIK 322



 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/274 (9%), Positives = 86/274 (31%), Gaps = 9/274 (3%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELI-----VETLKKQEIEKSGITFDSNTVNYF 105
           +++ ++   +     +    E  ++A   LI       +   Q+  +             
Sbjct: 159 VSEQEVKNFLNSDMGKMQMSEEYRLA-NILIPTPEAANSDDIQKAARKVGDVYQQLRQGA 217

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
                     ++E+     +             A       V +    ++  N  + +  
Sbjct: 218 DFGQMAIANSASENALEGGEMGWRKAGQLPPDFAKMLSSMPVGEITQPIRIPNGFIILKL 277

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
            +++  +  V    +      I  ++++++   ++  +   +            + F+  
Sbjct: 278 EEKRGGSENVLRDEVHVRHILIKPSEIRSEAATEQLAERLYDRIKNGEDFGELAKSFSED 337

Query: 226 I-HDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIA 283
               ++ G   ++  + L P+F+  +    Q   T P+ TQ G   + +  +R       
Sbjct: 338 PGSALNGGDLNWVDPNSLVPEFREQMANAQQGVVTKPFKTQYGWHVLEVLGRRATDSTEQ 397

Query: 284 LKA-YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            +     +     K ++    +++++R  A +  
Sbjct: 398 AREQQALSVLRNRKYDEELQTWLRQIRDEAYVEI 431


>gi|331017629|gb|EGH97685.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 440

 Score =  143 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 105/313 (33%), Gaps = 19/313 (6%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   ++    + +      +   ++ +VI    + +R+  ++              +L
Sbjct: 12  LMLGALLLSGAVHAAVQPLDSVVAIVDNDVIMKSQMDQRVREVQQTIAKRGSGVPPAADL 71

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +   +  LI+E L+ Q  E+SGI    + +N      A+   +S E F + L   G+   
Sbjct: 72  QPQVLDRLILENLQLQMGERSGIRVSDDELNQAIGTIAQRNNMSVEQFRAALAHDGLSYE 131

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             ++ +  + I   V +     +    E E+       +               I     
Sbjct: 132 DAREQVRREMIISRVRQRRVAERIQVSEQEVKNFLASDQGKAQLSEEFHLANILIATPDS 191

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLE---KFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            +   +Q     A+    +L K  +  +     +S  + +  G   +   + L P F   
Sbjct: 192 ASSDAIQAAAVKAKSIYDQLKKGADFAKIAATTSSSENALEGGDMGWRKAAQLPPPFGDM 251

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-----EIALKAYLSAQNTPTKIEKHEAE 303
           L      + T P  T  G   + + +KR   G     +     ++  + +  + E+    
Sbjct: 252 LSSMPIGDVTPPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRSEEATRL 311

Query: 304 YVKKLRSNAIIHY 316
             +K+     I  
Sbjct: 312 LAQKIYER--IEN 322



 Score = 92.4 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 15/149 (10%), Positives = 52/149 (34%), Gaps = 3/149 (2%)

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDV 229
           +        +      I  ++++++   +   +   E            + F+      +
Sbjct: 282 QGQAQMRDEVHVRHILIKPSEIRSEEATRLLAQKIYERIENGEDFATLAKSFSEDPGSAL 341

Query: 230 SIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-Y 287
           + G   ++  + L P+F++++    Q   + P+ T  G   + +  +R        +   
Sbjct: 342 NGGDLNWVDPNSLVPEFRDVMSSTPQGELSKPFKTAYGWHVLEVLGRRATDATGQARDQQ 401

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             +     K ++    +++++R  A +  
Sbjct: 402 ALSVLRNRKYDEELQTWLRQIRDEAYVEI 430


>gi|254787082|ref|YP_003074511.1| chaperone SurA precursor [Teredinibacter turnerae T7901]
 gi|237683982|gb|ACR11246.1| chaperone SurA precursor [Teredinibacter turnerae T7901]
          Length = 428

 Score =  143 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 46/314 (14%), Positives = 103/314 (32%), Gaps = 15/314 (4%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--- 69
           +  +    + +    + + SY    M  R+   ++  VIT  ++  RIA +  +      
Sbjct: 1   MTSIFVSVLAVFALALSLPSYSQPQMLDRVVVIVDKSVITQSELDSRIANITQRAAQAGM 60

Query: 70  -----GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L+K  + +LI ETL+    ++ GI      +N        + G   E F+  +
Sbjct: 61  RLPGRDVLQKQVLDQLISETLQLNMAKRYGIEISDADLNGAIQNIKASRGWDDETFAREI 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT---VREYLIR 181
             +    + F++ L  +     V +     +    E EI    +             L  
Sbjct: 121 HAEAANMHEFRENLRREITLQQVSQGVVRGRIRISEQEISNFLKSADAQFWISPDYRLGH 180

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
            ++   P    +     +KR +   +  +            +S    +  G   +   +D
Sbjct: 181 ILIPLPPAPSKEQTEAAEKRAEAIYQQLVNGANFGEMAIAESSGPSALKGGDLGFRKSAD 240

Query: 242 LHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN---TPTKI 297
           L   F +        + + P  +Q G   + + DKR    ++  +A +       +    
Sbjct: 241 LPTLFAEIAPTLEVGDVSKPARSQAGFHILKLMDKRGETKQVVSQAKVRHILLKPSAILP 300

Query: 298 EKHEAEYVKKLRSN 311
                  ++++R  
Sbjct: 301 SDKARAKLEQMREQ 314



 Score = 88.2 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 42/126 (33%), Gaps = 3/126 (2%)

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-L 250
            +     K  +  E+            +  +  I   +S G   +        +F     
Sbjct: 300 PSDKARAKLEQMREQIIKGEADFAELAKDNSEDIGSKMSGGDLGWAEPDTFVGEFAQTIR 359

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLG-GEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
                  + P+ TQ G   + + D+R     E A++A      T  + E     +++++R
Sbjct: 360 DTKIGEISEPFQTQFGWHILEVLDRRQEDLTEEAIRAKARQVLTSRRFEDETQVWLQEMR 419

Query: 310 SNAIIH 315
            +A I 
Sbjct: 420 DDAFIE 425


>gi|121596392|ref|YP_988288.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42]
 gi|120608472|gb|ABM44212.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42]
          Length = 471

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 46/308 (14%), Positives = 100/308 (32%), Gaps = 17/308 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGEL 72
              +       +  +   +  I   +N E IT+ ++ +R   +  Q             L
Sbjct: 48  AATLLPPAGATASNAPRQADYIVAVVNSEPITNNEVRQRTERVVQQIASQGGQVPPQELL 107

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            K  ++ LI+E ++ Q+ +++GI  D   VN      AR   +S ++    L   GI   
Sbjct: 108 AKEVLERLILEKIQVQQAKETGIKVDDYAVNQAEQSVARQNSISVDEMHRRLAADGISKE 167

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI----RTVLFSIP 188
            F++ L  Q +   + + D   +    ++E+    ++ +       L       ++    
Sbjct: 168 RFREELRNQLLALRLRERDVESRVRVSDLEVDQYLREQRQAAGPGKLELNLGHILVKVPE 227

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
           +           R ++A               +++      + G             F N
Sbjct: 228 NAGPDEVAQRSARAQEALAKVQAGGDFGAVAREYSDAPEGANGGLLGLRPADRYPELFVN 287

Query: 249 -LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL----KAYLSAQNTPTKIEKHEAE 303
              + S  +   P  +  G   + + DK   G           ++  +      E+  AE
Sbjct: 288 ATQQASVGSVVGPVRSPSGFHILKVVDKTQSGVPTTAVQSHARHILLRTNANLSERQAAE 347

Query: 304 YVKKLRSN 311
            ++ LR  
Sbjct: 348 RLEDLRDR 355



 Score =  102 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 45/139 (32%), Gaps = 2/139 (1%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
               +    +  L  +   ++     +              +++        G   +   
Sbjct: 328 HARHILLRTNANLSERQAAERLEDLRDRVARGGADFAALAREYSQDGSAKDGGDLGWASP 387

Query: 240 SDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKI 297
               P+F+  L        + P V++ GV  I + ++R+       +   +       K+
Sbjct: 388 GRYVPEFEEALNALRPGEISRPVVSRFGVHLIQLLERREAKLTQREQREMVRDTVREKKL 447

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           ++  A ++++ R  A + Y
Sbjct: 448 DEAFATWIQEARGRAYVEY 466


>gi|222056791|ref|YP_002539153.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
           FRC-32]
 gi|221566080|gb|ACM22052.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
           FRC-32]
          Length = 320

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 49/318 (15%), Positives = 97/318 (30%), Gaps = 16/318 (5%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING---- 70
           +        +  +    +     + + +   +N +VIT  ++ K    +  +        
Sbjct: 1   MNKFLLYFAVSVLFICPAAAKGELITAVAAIVNDDVITTLEVQKETDQIIKEMEKKGPAE 60

Query: 71  -----ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
                 L KIA+  LI + L +Q+I++  I      +        +   L+ E   + L 
Sbjct: 61  TPDKAALRKIALDRLIDKKLVEQKIKELDIKVPEEELRQSIEDVKKQNNLTQEALVAALA 120

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
            QG+    +K  L  Q     ++  +   K    E EI    +   N    E   R    
Sbjct: 121 GQGLSFEQYKTQLREQLERLRLMSQEVRSKIQVGEREIREYYEANHNRYGEEEFFRARHI 180

Query: 186 SIPDNKLQNQGFVQKRI---KDAEESRLRLPKDCNKLEKFASKIHDVS-IGKAQYLLESD 241
                K   +    K +       +             +F+         G      + D
Sbjct: 181 FFKVGKDAPESEAAKVMTTATQVLQEARSGKDFAELARQFSDDPAAKKDGGDLGTFKKGD 240

Query: 242 LHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICD--KRDLGGEIALKAYLSAQNTPTKIE 298
           +  + +  +        ++P  T  G   I + +  K        +KA +       K E
Sbjct: 241 MIGEIEAAVSGMKPGEVSDPVKTAAGFHIIKLEERSKGKPRPFEEVKAEIEDLLYKKKSE 300

Query: 299 KHEAEYVKKLRSNAIIHY 316
           +   ++V  LR  A I  
Sbjct: 301 ERFNQWVNDLRKGAAIEI 318


>gi|325922420|ref|ZP_08184189.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas gardneri ATCC
           19865]
 gi|325547117|gb|EGD18202.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas gardneri ATCC
           19865]
          Length = 466

 Score =  142 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 37/320 (11%), Positives = 106/320 (33%), Gaps = 17/320 (5%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK- 67
           ++    +L    ++I   + P+ S +      RI   ++ +V+   ++ + +  +K Q  
Sbjct: 1   MTKPFSVLLASLLVITSTVSPMASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYA 60

Query: 68  -------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
                   +  L++  ++ L++  L+    + +GI      +N      A+  G + +  
Sbjct: 61  GRDNQLPPDDVLQRQVLERLVLVKLQVGRADSTGIRVSDEELNRAIASIAQQNGTTVDGL 120

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
              L   G+G   F+  +  + I   + ++    +    E E+     +      + +L 
Sbjct: 121 RQKLAADGMGYGDFRASVRDEIIVQRLRQSFAQSRISVSEGEVDTALAQQATTGSQYHLA 180

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKIHDVSIGKAQYLLE 239
             ++        +     QK++   +    +          +++   + +  G   +   
Sbjct: 181 HILVGLPEGANAEQIATGQKKVDGVKALIDKGELDFSAAAVRYSDSPNALEGGDLGWRSL 240

Query: 240 SDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK-------AYLSAQ 291
            ++   F   +          P     G + + + + RD       K        ++  +
Sbjct: 241 DEIPNAFAQLIRDMQPGQVAGPLRGPSGFQLLKLVEMRDANAGGEKKLVTEYNARHILVR 300

Query: 292 NTPTKIEKHEAEYVKKLRSN 311
               + E      +  LR+ 
Sbjct: 301 IGDNQTEAQAKAKIDTLRAR 320



 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 17/155 (10%), Positives = 41/155 (26%), Gaps = 3/155 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +                       +     Q +   + +I                 ++ 
Sbjct: 275 VEMRDANAGGEKKLVTEYNARHILVRIGDNQTEAQAKAKIDTLRARITGGADFQATAKES 334

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           +         G   +       P F + +   +    + P+ TQ G   +     R    
Sbjct: 335 SEDTNSRGQGGDLGWFPADAFGPDFGKQVEGLADGAVSEPFRTQAGWHIVQRVGSRQTDV 394

Query: 281 E-IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              + +A +       K+E+    Y+++LR  A +
Sbjct: 395 SAESQRAQIRETIGRRKLEEEYNRYLQELRGEAYV 429


>gi|26987145|ref|NP_742570.1| survival protein SurA [Pseudomonas putida KT2440]
 gi|24981777|gb|AAN66034.1|AE016232_7 survival protein SurA [Pseudomonas putida KT2440]
          Length = 439

 Score =  142 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 110/329 (33%), Gaps = 25/329 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M +K+   L           VL+   ++    + +     R+   ++ +V+    + +R+
Sbjct: 1   MKTKLIDRLRP---------VLLGVALLSGAVHAAVQPLDRVVAIVDNDVVMQSQLDQRV 51

Query: 61  ALLKLQK--------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
             ++               LE+  ++ LIVE L+ Q  E+SGI      +N      A+ 
Sbjct: 52  HEVQQTIAKRGGGVPPTSALEQQVLERLIVENLQLQIGERSGIRITDEELNQAIGTIAQR 111

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
            G+S + F + L + G+  +  ++ +  + I   V +     +    E E+         
Sbjct: 112 NGMSLDQFRAALARDGLSFDDAREQVKREMIISRVRQRRVAERIQVSEQEVKNFLASDLG 171

Query: 173 ITVREYLIR---TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
                   R    ++ +       +     +++ D  +   +           ++  + +
Sbjct: 172 KMQMSEEYRLANILIPTPEAANSDDIQKAARKVGDVYQQLRQGADFGQMAIANSASENAL 231

Query: 230 SIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGG----EIAL 284
             G+  +     L P F  +L        T P     G   + + +KR        +   
Sbjct: 232 EGGEMGWRKAGQLPPDFAKMLSSMPVGEITQPIRIPNGFIILKLEEKRGGSENVLRDEVH 291

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             ++  + +  + E    +  ++L     
Sbjct: 292 VRHILIKPSEIRSEAATEQLAERLYDRIK 320



 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/233 (9%), Positives = 72/233 (30%), Gaps = 3/233 (1%)

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
            Q+  +                       ++E+     +             A       
Sbjct: 197 IQKAARKVGDVYQQLRQGADFGQMAIANSASENALEGGEMGWRKAGQLPPDFAKMLSSMP 256

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           V +    ++  N  + +   +++  +  V    +      I  ++++++   ++  +   
Sbjct: 257 VGEITQPIRIPNGFIILKLEEKRGGSENVLRDEVHVRHILIKPSEIRSEAATEQLAERLY 316

Query: 207 ESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQ 264
           +            + F+      ++ G   ++  + L P+F+  +    Q   T P+ TQ
Sbjct: 317 DRIKNGEDFGELAKSFSEDPGSALNGGDLNWVDPNSLVPEFREQMANAQQGVVTKPFKTQ 376

Query: 265 KGVEYIAICDKRDLGGEIALKA-YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            G   + +  +R        +     +     K ++    +++++R  A +  
Sbjct: 377 YGWHVLEVLGRRATDSTEQAREQQALSVLRNRKYDEELQTWLRQIRDEAYVEI 429


>gi|313496769|gb|ADR58135.1| Chaperone surA [Pseudomonas putida BIRD-1]
          Length = 439

 Score =  142 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 109/329 (33%), Gaps = 25/329 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M +K+   L           VL+   ++    + +     R+   ++ +V+    + +R+
Sbjct: 1   MKTKLIDRLRP---------VLLGVALLSGAVHAAVQPLDRVVAIVDNDVVMQSQLDQRV 51

Query: 61  ALLKLQK--------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
             ++               LE+  ++ LIVE L+ Q  E+SGI      +N      A+ 
Sbjct: 52  HEVQQTIAKRGGGVPPTSALEQQVLERLIVENLQLQIGERSGIRITDEELNQAIGTIAQR 111

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
            G+S + F + L + G+     ++ +  + I   V +     +    E E+         
Sbjct: 112 NGMSLDQFRAALARDGLSFEDAREQVKREMIISRVRQRRVAERIQVSEQEVKNFLASDLG 171

Query: 173 ITVREYLIR---TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
                   R    ++ +       +     +++ D  +   +           ++  + +
Sbjct: 172 KMQMSEEYRLANILIPTPEAANSDDIQKAARKVGDVYQQLRQGADFGQMAIANSASENAL 231

Query: 230 SIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGG----EIAL 284
             G+  +     L P F  +L        T P     G   + + +KR        +   
Sbjct: 232 EGGEMGWRKAGQLPPDFAKMLSSMPVGEITQPIRIPNGFIILKLEEKRGGSENVLRDEVH 291

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             ++  + +  + E    +  ++L     
Sbjct: 292 VRHILIKPSEIRSEAATQQLAERLYDRIK 320



 Score = 90.9 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 71/233 (30%), Gaps = 3/233 (1%)

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
            Q+  +                       ++E+     +             A       
Sbjct: 197 IQKAARKVGDVYQQLRQGADFGQMAIANSASENALEGGEMGWRKAGQLPPDFAKMLSSMP 256

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           V +    ++  N  + +   +++  +  V    +      I  ++++++   Q+  +   
Sbjct: 257 VGEITQPIRIPNGFIILKLEEKRGGSENVLRDEVHVRHILIKPSEIRSEAATQQLAERLY 316

Query: 207 ESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQ 264
           +            + F+      ++ G   ++  + L P+F+  +    Q   T P+ TQ
Sbjct: 317 DRIKNGEDFGELAKSFSEDPGSALNGGDLNWVDPNSLVPEFREQMANAQQGVVTKPFKTQ 376

Query: 265 KGVEYIAICDKRDLGGEIALKA-YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            G   + +  +R        +           K ++    +++++R  A +  
Sbjct: 377 YGWHVLEVLGRRATDSTEQAREQQALGVLRNRKYDEELQTWLRQIRDEAYVEI 429


>gi|146281122|ref|YP_001171275.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas stutzeri
           A1501]
 gi|145569327|gb|ABP78433.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas stutzeri
           A1501]
          Length = 451

 Score =  142 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 96/301 (31%), Gaps = 15/301 (4%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGELEKIAVQE 79
           +   +        R+   ++ +VI    +++R+  ++               L++  ++ 
Sbjct: 40  LAPAALAQVQPLDRVVAIVDNDVIMQSQLNQRMREVQQTIEKRGADAPPTDVLQQQVLER 99

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           LI E L+ Q  E+SGI      +N      A+   +S E F   L + G+     ++ + 
Sbjct: 100 LITENLQLQIGERSGIRISDEELNQAMGTIAQRNNMSLEQFREALARDGLSLETAREQIR 159

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR---TVLFSIPDNKLQNQG 196
            + +   V +     +      E+                      ++            
Sbjct: 160 REMVISRVRQRRVAERIQVSNQEVQNFLASDLGKLQLSEEYHLANILIAVPEGADSATIQ 219

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQN 255
             ++   D  +   +           +   + +  G   +   + L P F   +++ S  
Sbjct: 220 AAERTAMDTYQQLQQGADFARLAVSRSGSENALEGGDMGWRKAAQLPPPFDTEVRELSVG 279

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGG---EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             T P  T  G   + + DKR       +     ++  + +  + ++     V++LR   
Sbjct: 280 EVTQPVRTPPGFIMLKLLDKRGGETQVRDEVHVRHILIKPSAIRSDEEARLLVQRLRDRI 339

Query: 313 I 313
            
Sbjct: 340 N 340



 Score = 88.6 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 11/138 (7%), Positives = 45/138 (32%), Gaps = 3/138 (2%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
                 I  + +++    +  ++   +              F+      ++ G   ++  
Sbjct: 311 HVRHILIKPSAIRSDEEARLLVQRLRDRINAGEDFAQLARSFSEDPGSALNGGDLNWIDP 370

Query: 240 SDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-YLSAQNTPTKI 297
           + L P+F+ ++        +  + +  G   + +  +R        +     +     K 
Sbjct: 371 ASLVPEFREVMANTPSGELSQVFKSPYGWHILEVLGRRATDASEQFREQQALSLLRNRKY 430

Query: 298 EKHEAEYVKKLRSNAIIH 315
           ++    +++++R  A + 
Sbjct: 431 DEELQAWLRQIRDEAYVE 448


>gi|148545689|ref|YP_001265791.1| SurA domain-containing protein [Pseudomonas putida F1]
 gi|148509747|gb|ABQ76607.1| SurA N-terminal domain [Pseudomonas putida F1]
          Length = 439

 Score =  142 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 110/329 (33%), Gaps = 25/329 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M +K+   L           VL+   ++    + +     R+   ++ +V+    + +R+
Sbjct: 1   MKTKLIDRLRP---------VLLGVALLSGAVHAAVQPLDRVVAIVDNDVVMQSQLDQRV 51

Query: 61  ALLKLQK--------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
             ++               LE+  ++ LIVE L+ Q  E+SGI      +N      A+ 
Sbjct: 52  HEVQQTIAKRGGGVPPTSALEQQVLERLIVENLQLQIGERSGIRITDEELNQAIGTIAQR 111

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
            G+S + F + L + G+  +  ++ +  + I   V +     +    E E+         
Sbjct: 112 NGMSLDQFRAALARDGLSFDDAREQVKREMIISRVRQRRVAERIQVSEQEVKNFLASDLG 171

Query: 173 ITVREYLIR---TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
                   R    ++ +       +     +++ D  +   +           ++  + +
Sbjct: 172 KMQMSEEYRLANILIPTPEAANSDDIQKAARKVGDVYQQLRQGADFGQMAIANSASENAL 231

Query: 230 SIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGG----EIAL 284
             G+  +     L P F  +L        T P     G   + + +KR        +   
Sbjct: 232 EGGEMGWRKAGQLPPDFAKMLSSMPVGEITQPIRIPNGFIILKLEEKRGGSENVLRDEVH 291

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             ++  + +  + E    +  ++L     
Sbjct: 292 VRHILIKPSEIRSEAATQQLAERLYDRIK 320



 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 72/233 (30%), Gaps = 3/233 (1%)

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
            Q+  +                       ++E+     +             A       
Sbjct: 197 IQKAARKVGDVYQQLRQGADFGQMAIANSASENALEGGEMGWRKAGQLPPDFAKMLSSMP 256

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           V +    ++  N  + +   +++  +  V    +      I  ++++++   Q+  +   
Sbjct: 257 VGEITQPIRIPNGFIILKLEEKRGGSENVLRDEVHVRHILIKPSEIRSEAATQQLAERLY 316

Query: 207 ESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQ 264
           +            + F+      ++ G   ++  + L P+F+  +    Q   T P+ TQ
Sbjct: 317 DRIKNGEDFGELAKSFSEDPGSALNGGDLNWVDPNSLVPEFREQMANAQQGVVTKPFKTQ 376

Query: 265 KGVEYIAICDKRDLGGEIALKA-YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            G   + +  +R        +     +     K ++    +++++R  A +  
Sbjct: 377 YGWHVLEVLGRRATDSTEQAREQQALSVLRNRKYDEELQTWLRQIRDEAYVEI 429


>gi|222112631|ref|YP_002554895.1| sura domain-containing protein [Acidovorax ebreus TPSY]
 gi|221732075|gb|ACM34895.1| SurA domain protein [Acidovorax ebreus TPSY]
          Length = 471

 Score =  142 bits (357), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 45/308 (14%), Positives = 100/308 (32%), Gaps = 17/308 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGEL 72
              +       +  +   +  I   +N E IT+ ++ +R   +  Q             L
Sbjct: 48  AATLLPPAGATASNAPRQADYIVAVVNSEPITNNEVRQRTERVVQQIASQGGKVPPQELL 107

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            K  ++ LI+E ++ Q+ +++GI  D   V+      AR   +S ++    L   GI   
Sbjct: 108 AKEVLERLILEKIQVQQAKETGIKVDDYAVSQAEQSVARQNSISVDEMHRRLAADGISKE 167

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI----RTVLFSIP 188
            F++ L  Q +   + + D   +    ++E+    ++ +       L       ++    
Sbjct: 168 RFREELRNQLLALRLRERDVESRVRVSDLEVDQYLREQRQAAGPGKLELNLGHILVKVPE 227

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
           +           R ++A               +++      + G             F N
Sbjct: 228 NAGPDEVAQRSARAQEALAKVQAGGDFGAVAREYSDAPEGANGGLLGLRPADRYPELFVN 287

Query: 249 -LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL----KAYLSAQNTPTKIEKHEAE 303
              + S  +   P  +  G   + + DK   G           ++  +      E+  AE
Sbjct: 288 ATQQASVGSVVGPVRSPAGFHILKVVDKTQSGVPTTAVQSHARHILLRTNANLSERQAAE 347

Query: 304 YVKKLRSN 311
            ++ LR  
Sbjct: 348 RLEDLRDR 355



 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 45/139 (32%), Gaps = 2/139 (1%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
               +    +  L  +   ++     +              +++        G   +   
Sbjct: 328 HARHILLRTNANLSERQAAERLEDLRDRVARGGADFAALAREYSQDGSAKDGGDLGWASP 387

Query: 240 SDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEI-ALKAYLSAQNTPTKI 297
               P+F+  L        + P V++ GV  I + ++R+        +  +       K+
Sbjct: 388 GRYVPEFEEALNALRPGEISRPVVSRFGVHLIQLLERREAKLTQREQRDMVRDTVREKKL 447

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           ++  A ++++ R  A + Y
Sbjct: 448 DEAFATWIQEARGRAYVEY 466


>gi|104779703|ref|YP_606201.1| peptidyl-prolyl cis-trans isomerase A [Pseudomonas entomophila L48]
 gi|95108690|emb|CAK13384.1| putative peptidyl-prolyl cis-trans isomerase A [Pseudomonas
           entomophila L48]
          Length = 439

 Score =  142 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 51/329 (15%), Positives = 115/329 (34%), Gaps = 25/329 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M SK+   L   +         +   ++    + +     R+   ++ +V+    + +R+
Sbjct: 1   MKSKLIDRLRPLM---------LGAVLLSGAVHAAVQPIDRVVAIVDNDVVMQSQLDQRV 51

Query: 61  ALLKLQKIN--------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
             ++             G LE+  ++ LIVE L+ Q  E+SGI      +N      A+ 
Sbjct: 52  HEVQQTIAKRGGGVPPAGALEQQVLERLIVENLQLQIGERSGIRITDEELNQAVGTIAQR 111

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
            G+S E F + L   G+  +  ++ +  + I   V +     +    E E+         
Sbjct: 112 NGMSLEQFRAALAHDGLSYDDAREQIKREMIISRVRQRRVAERIQVSEQEVKNFLNSDLG 171

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE---KFASKIHDV 229
                   R     IP  +  N   +Q   + A +   +L +  +        ++  + +
Sbjct: 172 KMQLSEEYRLANILIPTPESANSDAIQAAARQAGDVYQQLKQGADFARLAIARSASENAL 231

Query: 230 SIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG----EIAL 284
             G+  +     L P F + L   +  + T P     G   + + +KR        +   
Sbjct: 232 EGGEMGWRKAGQLPPDFAKMLSSMATGDVTQPIRIPNGFIILKLEEKRGGESSVLRDEVH 291

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             ++  + +  + +K   +  ++L     
Sbjct: 292 VRHILIKPSEIRSDKATEQLAERLYDRIK 320



 Score = 89.7 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 48/139 (34%), Gaps = 3/139 (2%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
                 I  +++++    ++  +   +            + F+      ++ G   ++  
Sbjct: 291 HVRHILIKPSEIRSDKATEQLAERLYDRIKNGEDFSELAKSFSEDPGSALNGGDLNWVDP 350

Query: 240 SDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-YLSAQNTPTKI 297
           + L P+F+  +    Q   T P+ TQ G   + +  +R        +           K 
Sbjct: 351 NSLVPEFREQMANAQQGEVTRPFRTQYGWHVLEVMGRRATDSTAQAREQQAMNVLRNRKY 410

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           ++    +++++R  A +  
Sbjct: 411 DEELQTWLRQIRDEAYVEI 429


>gi|330961060|gb|EGH61320.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 440

 Score =  142 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 41/313 (13%), Positives = 100/313 (31%), Gaps = 19/313 (6%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   ++    + +      +   ++ +VI    + +R+  ++               L
Sbjct: 12  LMLGALLLSGAVHAAVQPLDSVVAIVDNDVIMKSQMDQRVREVQQTIAKRGSGVPPAEAL 71

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +K  +  LI+E L+ Q  E++GI      +N      A+   +S + F + L   G+  +
Sbjct: 72  QKQVLDRLILENLQLQMGERAGIRVSDEELNQAIGTIAQRNNMSVDQFRAALAHDGLSYD 131

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             ++ +  + I   V +     +    E E+       +               I     
Sbjct: 132 DAREQVRREMIISRVRQRRVAERIQVSEQEVKNFLASDQGKAQLSEEFHLANILIATPDS 191

Query: 193 QNQGFVQKRIKD---AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            +   +Q          +   +           +S  + +  G   +   + L P F   
Sbjct: 192 ASSEAIQAAAIKAKSIYDQLKKGADFGKLATTNSSSENALEGGDMGWRKAAQLPPPFGDM 251

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-----EIALKAYLSAQNTPTKIEKHEAE 303
           L      + T P  T  G   + + +KR   G     +     ++  + +  + E+    
Sbjct: 252 LSSMPIGDVTPPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRSEEATKL 311

Query: 304 YVKKLRSNAIIHY 316
             +K+     I  
Sbjct: 312 LAQKIYDR--IEN 322



 Score = 90.9 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 14/149 (9%), Positives = 50/149 (33%), Gaps = 3/149 (2%)

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDV 229
           +        +      I  ++++++   +   +   +            + F+      +
Sbjct: 282 QGQAQMRDEVHVRHILIKPSEIRSEEATKLLAQKIYDRIENGEDFATLAKSFSEDPGSAL 341

Query: 230 SIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-Y 287
           + G   ++  + L P+F + +    Q   + P+ T  G   + +  +R        +   
Sbjct: 342 NGGDLNWVDPNSLVPEFREVMSNTPQGVLSKPFKTAYGWHVLEVLGRRATDATGQAREQQ 401

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             +     K ++    +++++R  A +  
Sbjct: 402 ALSVLRNRKYDEELQTWLRQIRDEAYVEI 430


>gi|285019522|ref|YP_003377233.1| ppic-type peptidyl-prolyl cis-trans isomerase [Xanthomonas
           albilineans GPE PC73]
 gi|283474740|emb|CBA17239.1| probable ppic-type peptidyl-prolyl cis-trans isomerase protein
           [Xanthomonas albilineans]
          Length = 455

 Score =  142 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 37/320 (11%), Positives = 108/320 (33%), Gaps = 22/320 (6%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMS---SRIRTTINGEVITDGDISKRIALLKLQK-- 67
           +    + F+L +  I  + +  +   +    RI   ++ +V+   ++ + +  +K Q   
Sbjct: 1   MTKTLSAFLLAVLAIAGVSAQAAVQQTQPLDRIAAVVDEDVVLQSELDRAVRNVKAQYAG 60

Query: 68  ------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
                  +  L +  ++ L++  L+      +GI    + +N      A+      +   
Sbjct: 61  RDTQLPPDNVLRRQVLERLVLVKLQVARANSTGIHVSDDELNRAIASIAQQNNTDVDGLR 120

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
             +   G+  + F+  +  +     + ++    +    E E+ A   +    T  +Y + 
Sbjct: 121 KKIAADGMSYDDFRNSVRDEITVQRLRQSFAQSRINVSESEVDAALTQQAT-TGTQYHLA 179

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP--KDCNKLEKFASKIHDVSIGKAQYLLE 239
            +L  +P+     Q    +   D  +S +            +++   + +  G   +   
Sbjct: 180 HILVGLPEGATAEQIKTAQGKIDGVKSLIDKGEIDFNAAAVRYSDSPNALEGGDLGWRSL 239

Query: 240 SDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK-------AYLSAQ 291
            ++   F   +          P     G + + + + RD       K        ++ A+
Sbjct: 240 DEIPNAFAQLIRDMKPGQVAGPLRGPSGFQLLKLVEVRDAAANPEKKTVTEYHARHILAR 299

Query: 292 NTPTKIEKHEAEYVKKLRSN 311
            +  + +      ++ LR+ 
Sbjct: 300 VSDAQPDAAAKAKIETLRAR 319



 Score = 83.6 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 12/155 (7%), Positives = 44/155 (28%), Gaps = 3/155 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +                          +  Q     + +I+                ++ 
Sbjct: 274 VEVRDAAANPEKKTVTEYHARHILARVSDAQPDAAAKAKIETLRARIAGGADFQKVAKEA 333

Query: 223 ASKIHDVS-IGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA-ICDKRDLG 279
           +   +  +  G   +         F + ++       + P+ T+ G   +  + +++   
Sbjct: 334 SDDTNSRNQGGDLGWFPIDAFGADFGHQVESLQDGQISPPFRTEAGWHILQRVGERQTDV 393

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                +A +       K+E+    +++++R  A +
Sbjct: 394 TSDTQRAQVRETIGRRKLEEEYNRFLQEMRGEAYV 428


>gi|122070668|sp|Q4K4X7|SURA_PSEF5 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
          Length = 426

 Score =  142 bits (356), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 45/306 (14%), Positives = 101/306 (33%), Gaps = 17/306 (5%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGELEKIA 76
              +   +  +     ++   ++ +V+    + +R+  ++               LE+  
Sbjct: 4   ALFLSTAASAAVQSIDKVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGVPPTSVLEQQV 63

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           ++ LIVE L+ Q  E+SGI      +N      A+   +S E F + L   G+     + 
Sbjct: 64  LERLIVENLQLQIGERSGIRITDEELNQAIGTIAQRNSMSIEQFRAALAHDGLSYEDARD 123

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
            +  + I   V +     +    E E+                +      IP  +  N  
Sbjct: 124 QVRREMIISRVRQRRVAERIQVSEQEVKNFLASDLGKMQLSEELHLANILIPTPESANSE 183

Query: 197 FV---QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKK 252
            +    ++  +  +   +           +   + +  G   +   + L P F + L   
Sbjct: 184 AIQSAARQAMEVYQQLKQGADFAQLAIARSGSDNALEGGDMGWRKAAQLPPPFDRELSAM 243

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGG---EIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
           +  + T P  T  G   + + DKR  G    +     ++  + +  + E+      +KL 
Sbjct: 244 AVGDITQPARTPGGFIILKLLDKRGGGNQVRDEVHVRHILIKPSEIRSEEETKRLAQKLY 303

Query: 310 SNAIIH 315
               I 
Sbjct: 304 DR--IE 307



 Score = 90.5 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 13/139 (9%), Positives = 50/139 (35%), Gaps = 3/139 (2%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
                 I  ++++++   ++  +   +            + ++      ++ G   ++  
Sbjct: 278 HVRHILIKPSEIRSEEETKRLAQKLYDRIEAGEDFAELAKSYSEDPGSALNGGDLNWIDP 337

Query: 240 SDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-YLSAQNTPTKI 297
           + L P+F+ ++ K  Q   + P+ +  G   + +  +R        +           K 
Sbjct: 338 NALVPEFREVMAKTPQGQLSKPFKSPYGWHVLEVLGRRATDSTSQAREQQAMTVLRNRKY 397

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           ++    +++++R  A +  
Sbjct: 398 DEELQTWLRQIRDEAYVEI 416


>gi|28867781|ref|NP_790400.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|81732691|sp|Q88A44|SURA_PSESM RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|28851016|gb|AAO54095.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 428

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 102/309 (33%), Gaps = 19/309 (6%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GELEKIA 76
             ++    + +      +   ++ +VI    + +R+  ++              +L+   
Sbjct: 4   ALLLSGAVHAAVQPLDSVVAIVDNDVIMKSQMDQRVREVQQTIAKRGSGVPPAADLQPQV 63

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           +  LI+E L+ Q  E+SGI    + +N      A+   +S E F + L   G+     ++
Sbjct: 64  LDRLILENLQLQMGERSGIRVSDDELNQAIGTIAQRNNMSVEQFRAALAHDGLSYEDARE 123

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
            +  + I   V +     +    E E+       +               I      +  
Sbjct: 124 QVRREMIISRVRQRRVAERIQVSEQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSD 183

Query: 197 FVQKRIKDAEESRLRLPKDCNKLE---KFASKIHDVSIGKAQYLLESDLHPQF-QNLLKK 252
            +Q     A+    +L K  +  +     +S  + +  G   +   + L P F   L   
Sbjct: 184 AIQAAAVKAKSIYDQLKKGADFAKIAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSSM 243

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGG-----EIALKAYLSAQNTPTKIEKHEAEYVKK 307
              + T P  T  G   + + +KR   G     +     ++  + +  + E+      +K
Sbjct: 244 PIGDVTPPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRSEEATKLLAQK 303

Query: 308 LRSNAIIHY 316
           +     I  
Sbjct: 304 IYER--IEN 310



 Score = 92.4 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 15/149 (10%), Positives = 52/149 (34%), Gaps = 3/149 (2%)

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDV 229
           +        +      I  ++++++   +   +   E            + F+      +
Sbjct: 270 QGQAQMRDEVHVRHILIKPSEIRSEEATKLLAQKIYERIENGEDFATLAKSFSEDPGSAL 329

Query: 230 SIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-Y 287
           + G   ++  + L P+F++++    Q   + P+ T  G   + +  +R        +   
Sbjct: 330 NGGDLNWVDPNSLVPEFRDVMSSTPQGELSKPFKTAYGWHVLEVLGRRATDATGQARDQQ 389

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             +     K ++    +++++R  A +  
Sbjct: 390 ALSVLRNRKYDEELQTWLRQIRDEAYVEI 418


>gi|237803361|ref|ZP_04590946.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331025342|gb|EGI05398.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 440

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 108/313 (34%), Gaps = 19/313 (6%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   ++    + +      +   ++ +VI    + +R+  ++               L
Sbjct: 12  LMLGALLLSGAVHAAVQPLDSVAAIVDNDVIMKSQVDQRVHEVQQTIAKRGSGVPPAEAL 71

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +K  +  LI+E L+ Q  E+SGI    + +N      A+   +S E F + L   G+  +
Sbjct: 72  QKQVLDRLILENLQLQMGERSGIRVSDDELNQAIASIAQRNNMSVEQFRAALIHDGVSYD 131

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV--REYLIRTVLFSIPDN 190
             ++ +  + I   V +     +    E E+       +       E+ +  +L + PD+
Sbjct: 132 DAREQVRREMIISRVRQRRVAERIQVSEQEVKNFLASDQGKAQLSEEFHLANILIATPDS 191

Query: 191 KLQNQGFVQKRIKDAE-ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
              +          +  +   +           +S  + +  G   +   + L P F   
Sbjct: 192 ASSDVIQAAALKAKSIYDQAKKGADFAKLAATTSSSENALEGGDMGWRKAAQLPPPFGDM 251

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-----EIALKAYLSAQNTPTKIEKHEAE 303
           L      + T P  T  G   + + +KR   G     +     ++  + +  + E+    
Sbjct: 252 LSSMPIGDVTPPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRSEEATKL 311

Query: 304 YVKKLRSNAIIHY 316
             +K+     I  
Sbjct: 312 LAQKIYER--IEN 322



 Score = 90.9 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 15/149 (10%), Positives = 51/149 (34%), Gaps = 3/149 (2%)

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDV 229
           +        +      I  ++++++   +   +   E            + F+      +
Sbjct: 282 QGQAQMRDEVHVRHILIKPSEIRSEEATKLLAQKIYERIENGEDFAALAKSFSEDPGSAL 341

Query: 230 SIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-Y 287
           + G   ++  + L P+F+ ++    Q   + P+ T  G   + +  +R        +   
Sbjct: 342 NGGDLNWVDPNSLVPEFREVMNSTPQGTLSKPFKTAYGWHVLEVLGRRATDATGQAREQQ 401

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             +     K ++    +++++R  A +  
Sbjct: 402 ALSVLRNRKYDEELQTWLRQIRDEAYVEI 430


>gi|66047852|ref|YP_237693.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. syringae B728a]
 gi|63258559|gb|AAY39655.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. syringae B728a]
 gi|330970840|gb|EGH70906.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. aceris str. M302273PT]
          Length = 442

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 98/313 (31%), Gaps = 19/313 (6%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   ++    + +      +   ++ +VI    + +R+  ++               L
Sbjct: 14  LMLGALLLSGAVHAAVQPLDSVVAIVDNDVIMKSQMDQRVREVQQTIAKRGSGVPPAEAL 73

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +   +  LI+E L+ Q  E+SGI      +N      A+   +S E F + L   G+  N
Sbjct: 74  QPQVLDRLILENLQLQMGERSGIRVSDEELNQAIGTIAQRNNMSVEQFRAALAHDGLSYN 133

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             ++ +  + I   V +     +    + E+                       I     
Sbjct: 134 DAREQVRREMIISRVRQRRVAERIQVSQQEVKNFLASDMGKAQLSEEFHLANILIATPDS 193

Query: 193 QNQGFVQKRIKD---AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            +   +Q          +   +           +S  + +  G   +   + L P F   
Sbjct: 194 ASSDAIQAAAVKAKGIYDQLKKGADFTRLAATSSSSENALEGGDMGWRKAAQLPPPFGDM 253

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-----EIALKAYLSAQNTPTKIEKHEAE 303
           L      + T P  T  G   + + +KR   G     +     ++  + +  + E+    
Sbjct: 254 LSSMPVGDVTPPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKR 313

Query: 304 YVKKLRSNAIIHY 316
             +K+     I  
Sbjct: 314 LAQKIYDR--IEN 324



 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 17/149 (11%), Positives = 55/149 (36%), Gaps = 3/149 (2%)

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDV 229
           +        +      I  ++++N+   ++  +   +            + F+      +
Sbjct: 284 QGQAQMRDEVHVRHILIKPSEIRNEEETKRLAQKIYDRIENGEDFAELAKSFSEDPGSAL 343

Query: 230 SIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAY 287
           + G   ++  + L P+F+ ++ +  Q   + P+ TQ G   + +  +R     + A +  
Sbjct: 344 NGGDLNWVDPNSLVPEFRQVMSETPQGVLSKPFQTQYGWHVLEVLGRRSTDATDQAREQQ 403

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                   K ++    +++++R  A +  
Sbjct: 404 ALNVLRNRKYDEELQTWLRQIRDEAYVEI 432


>gi|217969876|ref|YP_002355110.1| SurA domain protein [Thauera sp. MZ1T]
 gi|217507203|gb|ACK54214.1| SurA domain protein [Thauera sp. MZ1T]
          Length = 438

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 100/318 (31%), Gaps = 18/318 (5%)

Query: 12  FIKLLTTYF-VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--- 67
           F   +     +      +P+ S        RI   +N EVIT  ++  RI   + Q    
Sbjct: 6   FRSRVAIAIGLAATTLALPVHSAPRAVEVDRIVAVVNNEVITGLELRARIEQTRRQLARQ 65

Query: 68  -----INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
                    L++  ++ LIVE  + Q   +S +  D  T++    + A N  LS +   +
Sbjct: 66  GAQLPPEEVLQRQLLERLIVERAQLQLARESSLRVDDVTLDRAIERIASNNKLSIDQLRA 125

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
            L+K G+  + F+  +  + +   + + +   +    + EI        +    +     
Sbjct: 126 TLEKDGVTWSRFRDEIRSEILLTRLREREVDSRIVVTDAEIDNFIANNPDAFSGQEFAVA 185

Query: 183 VLFSIPDNKL--QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
            +          Q    V +R +                 + +     +  G   +    
Sbjct: 186 HILLRTPEGASPQQVEAVARRAEQVMARLRSGEDFARVAAEVSDAPDGLQGGSLGWRPLD 245

Query: 241 DLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRD------LGGEIALKAYLSAQNT 293
            L   F + + +     T+    +  G+  + + D R          E     ++  + +
Sbjct: 246 RLPALFADAVRRMRPGETSPVLRSAAGLHIVRLVDARGGGAAAVQKLEQTRARHILIKTS 305

Query: 294 PTKIEKHEAEYVKKLRSN 311
               +      +  +R  
Sbjct: 306 EVLSDADAEARLLAIRER 323



 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 50/144 (34%), Gaps = 2/144 (1%)

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKA 234
            +    R     I  +++ +    + R+    E  +         +  ++ +     G  
Sbjct: 290 QKLEQTRARHILIKTSEVLSDADAEARLLAIRERVVNGADFAELAKASSADLSAARGGDL 349

Query: 235 QYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR-DLGGEIALKAYLSAQN 292
            +L   D  P+F+  +        + P  +  G   I + ++R     +   +A      
Sbjct: 350 GWLNPGDTVPEFERAMNALRPGEVSAPVRSPFGWHLIQLVERRMQDVTDERKRAAARQAL 409

Query: 293 TPTKIEKHEAEYVKKLRSNAIIHY 316
              K E+   +++++LR +  + Y
Sbjct: 410 RERKAEQAYEDWLRQLRDSTYVDY 433


>gi|21230267|ref|NP_636184.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769740|ref|YP_244502.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|81304306|sp|Q4UR41|SURA_XANC8 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|81796311|sp|Q8PCE1|SURA_XANCP RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|21111813|gb|AAM40108.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575072|gb|AAY50482.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 463

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/320 (12%), Positives = 106/320 (33%), Gaps = 17/320 (5%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK- 67
           ++    +L    ++I   + P+ S +      RI   ++ +V+   ++ + +  +K Q  
Sbjct: 1   MTKPFSVLLASLLVITSTVSPLASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYA 60

Query: 68  -------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
                   +  L++  ++ L++  L+    E SGI      +N      A+  G S +  
Sbjct: 61  GRDNQLPPDDVLQRQVLERLVLVKLQVGRAEGSGIRVSDEELNRAIASIAQQNGTSVDGL 120

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
              L   G+G   F+  +  + I   + ++    +    E E+     +      + +L 
Sbjct: 121 RQKLAADGMGYADFRASVRDEIIVQRLRQSFAQSRISVSEGEVDTALAQQATTGSQYHLA 180

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKIHDVSIGKAQYLLE 239
             ++        +     QK++   +    +          +++   + +  G   +   
Sbjct: 181 HILVGLPEGATAEQIATGQKKVDGVKALIDKGELDFSAAAVRYSDSPNALEGGDLGWRSL 240

Query: 240 SDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK-------AYLSAQ 291
            ++   F   +          P     G + + + + RD       K        ++  +
Sbjct: 241 DEIPNAFAQLIRDMQPGQVAGPLRGPSGFQLLKLVEMRDANAGGEKKVLTEYNARHILVR 300

Query: 292 NTPTKIEKHEAEYVKKLRSN 311
               + E      +  LR+ 
Sbjct: 301 IGDNQTEAQAKAKIDTLRAR 320



 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 17/155 (10%), Positives = 41/155 (26%), Gaps = 3/155 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +                       +     Q +   + +I       +         ++ 
Sbjct: 275 VEMRDANAGGEKKVLTEYNARHILVRIGDNQTEAQAKAKIDTLRARIVGGADFQATAKES 334

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           +         G   +       P F + +   +    + P+ TQ G   +     R    
Sbjct: 335 SEDTNSRGQGGDLGWFPADAFGPDFGKQVEGLTDGAVSEPFRTQAGWHIVQRVGTRQTDV 394

Query: 281 E-IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                +A +       K+E+    Y+++LR  A +
Sbjct: 395 SAENQRAQIRETIGRRKLEEEYNRYLQELRGEAFV 429


>gi|254429963|ref|ZP_05043670.1| SurA N-terminal domain family [Alcanivorax sp. DG881]
 gi|196196132|gb|EDX91091.1| SurA N-terminal domain family [Alcanivorax sp. DG881]
          Length = 442

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/308 (13%), Positives = 100/308 (32%), Gaps = 14/308 (4%)

Query: 1   MTSKVFTSLSDFI--KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK 58
           M  +   +    +  +      + +   ++P  S     M  RI   +N   I   ++ +
Sbjct: 1   MIDRTLHAARRTLHARHTLLGLLAMAVLMLPAWSQAKVQMLDRIVAVVNDGAIMASELDE 60

Query: 59  RIALLKLQKI--------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           RI  + LQ             + +  +  +++E L+ Q  E+ GI  D  ++N      A
Sbjct: 61  RINTIALQFQEKGQQLPPPAVMREQVLDRMVLERLQLQLAERGGIKVDDASLNQALAGIA 120

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
           R  G+S EDF++ L + G     F++ +    +   + +     +    + E+       
Sbjct: 121 RQNGMSLEDFAAALRQDGYDWPQFREQIREDMVISRLQQRSVASRIQVTDREVDRFLSSE 180

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIH 227
               + +         +      +   V +    AE    +L    +        +    
Sbjct: 181 LGKQMFQEDFHLGHILVRVPAEASPEDVTQARSKAESIVKKLNDGGDFQQLAVAESDGPK 240

Query: 228 DVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA 286
            +  G       +     F +N +   +   + P  +  G   + + D++    ++  + 
Sbjct: 241 ALEGGDLGSRPAAQWPTLFAENAINLQKGEISEPLRSGAGFHILKMIDRKGGSEKVVTQY 300

Query: 287 YLSAQNTP 294
            +      
Sbjct: 301 QVRHVLIK 308



 Score = 83.2 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 17/141 (12%), Positives = 54/141 (38%), Gaps = 3/141 (2%)

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYL 237
                +    D     +   ++ I+  +E      +  +   +F+       S G+  ++
Sbjct: 300 YQVRHVLIKTDALTSAEQAHKQAIRLHDEIAAGERQFSDTAAEFSDDPGSARSGGELGWV 359

Query: 238 LESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-YLSAQNTPT 295
            + ++ P+F++++  +     +  + +Q G  ++ + D RD       +    +      
Sbjct: 360 NKGEMVPEFEDMMLNTPVGELSPVFESQFGWHFLRVDDVRDADMSAEFRRMQATQALQKR 419

Query: 296 KIEKHEAEYVKKLRSNAIIHY 316
           + E+    +V++ RS + +  
Sbjct: 420 RFEEELETWVQEKRSESYVDI 440


>gi|188992953|ref|YP_001904963.1| Peptidylprolyl isomerase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167734713|emb|CAP52923.1| Peptidylprolyl isomerase [Xanthomonas campestris pv. campestris]
          Length = 463

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/320 (12%), Positives = 106/320 (33%), Gaps = 17/320 (5%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK- 67
           ++    +L    ++I   + P+ S +      RI   ++ +V+   ++ + +  +K Q  
Sbjct: 1   MTKPFSVLLASLLVITSTVSPLASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYA 60

Query: 68  -------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
                   +  L++  ++ L++  L+    E SGI      +N      A+  G S +  
Sbjct: 61  GRDNQLPPDDVLQRQVLERLVLVKLQVGRAEGSGIRVSDEELNRAIASIAQQNGTSVDGL 120

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
              L   G+G   F+  +  + I   + ++    +    E E+     +      + +L 
Sbjct: 121 RQKLAADGMGYADFRASVRDEIIVQRLRQSFAQSRISVSEGEVDTALAQQATTGSQYHLA 180

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKIHDVSIGKAQYLLE 239
             ++        +     QK++   +    +          +++   + +  G   +   
Sbjct: 181 HILVGLPEGATAEQIATGQKKVDGVKALIDKGELDFSAAAVRYSDSPNALEGGDLGWRSL 240

Query: 240 SDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK-------AYLSAQ 291
            ++   F   +          P     G + + + + RD       K        ++  +
Sbjct: 241 DEIPNAFAQLIRDMQPGQVAGPLRGPSGFQLLKLVEMRDANAGGEKKVVTEYNARHILVR 300

Query: 292 NTPTKIEKHEAEYVKKLRSN 311
               + E      +  LR+ 
Sbjct: 301 IGDNQTEAQAKAKIDTLRAR 320



 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 17/155 (10%), Positives = 41/155 (26%), Gaps = 3/155 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +                       +     Q +   + +I       +         ++ 
Sbjct: 275 VEMRDANAGGEKKVVTEYNARHILVRIGDNQTEAQAKAKIDTLRARIVGGADFQATAKES 334

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           +         G   +       P F + +   +    + P+ TQ G   +     R    
Sbjct: 335 SEDTNSRGQGGDLGWFPADAFGPDFGKQVEGLTDGAVSEPFRTQAGWHIVQRVGTRQTDV 394

Query: 281 E-IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                +A +       K+E+    Y+++LR  A +
Sbjct: 395 SAENQRAQIRETIGRRKLEEEYNRYLQELRGEAFV 429


>gi|166710727|ref|ZP_02241934.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 463

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/320 (11%), Positives = 105/320 (32%), Gaps = 17/320 (5%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK- 67
           ++    ++    + I   I P+ S +      RI   ++ +V+   ++ + +  +K Q  
Sbjct: 1   MTKPFSVVLASLLAITSTISPLASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYA 60

Query: 68  -------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
                   +  L++  ++ LI+  L+    + SGI      +N      A+  G + +  
Sbjct: 61  GRENQLPPDDVLQRQVLERLILVKLQVGRADGSGIRVSDEELNRAIASIAQQNGTTVDGL 120

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
              L   G+G   F+  +  + I   + ++    +    E E+     +      + +L 
Sbjct: 121 RQKLAADGMGYADFRASVRDEIIVQRLRQSFAQSRISVSEGEVDTALTQQAATGSKYHLA 180

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKIHDVSIGKAQYLLE 239
             ++        +     QK++   +    +          +++   + +  G   +   
Sbjct: 181 HILIGLPEGATAEQIATGQKKVDGVKALIDKGELDFSAAAVRYSDSPNALEGGDLGWRSL 240

Query: 240 SDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK-------AYLSAQ 291
            ++   F   +          P     G + + + + RD       K        ++  +
Sbjct: 241 DEIPNAFAQLIRDMKPGQVAGPLRGPSGFQLLKLVEMRDANAGGEKKMVTEYNARHILVR 300

Query: 292 NTPTKIEKHEAEYVKKLRSN 311
               + E      +  +R+ 
Sbjct: 301 VGDNQTEAQAKAKIDTIRAR 320



 Score = 92.4 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 42/157 (26%), Gaps = 3/157 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +                       +     Q +   + +I       +         ++ 
Sbjct: 275 VEMRDANAGGEKKMVTEYNARHILVRVGDNQTEAQAKAKIDTIRARIVGGADFQATAKES 334

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           +         G   +       P F + +   +    + P+ TQ G   +     R    
Sbjct: 335 SEDTNSRGQGGDLGWFPADAFGPDFGKQVESLADGAVSEPFRTQAGWHIVQRVGSRQTDV 394

Query: 281 E-IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                +A +       K+E+    Y+++LR  A + Y
Sbjct: 395 SAENQRAQVRETIGRRKLEEEYNRYLQELRGEAYVSY 431


>gi|330891199|gb|EGH23860.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 440

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/310 (13%), Positives = 99/310 (31%), Gaps = 17/310 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   ++    + +      +   ++ +VI    + +R+  ++               L
Sbjct: 12  LMLGALLLSGAVHAAVQPLDSVVAIVDNDVIMKSQMDQRVREVQQTIAKRGSGVPPAEAL 71

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +   +  LI+E L+ Q  E+SGI    + +N      A+   +S E F + L   G+  N
Sbjct: 72  QPQVLDRLILENLQLQMGERSGIRVSDDELNQAIGTIAQRNNMSVEQFRAALAHDGLSYN 131

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             ++ +  + I   V +     +    + E+       +               I     
Sbjct: 132 DAREQVRREMIISRVRQRRVAERIQVSQQEVKNFLASDQGKAQLSEEFHLANILIATPDS 191

Query: 193 QNQGFVQKRIKD---AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            +   +Q          +   +           +S  + +  G   +   + L P F   
Sbjct: 192 ASSDAIQAAAVKAKGIYDQLKKGADFTQLAATSSSSENALEGGDMGWRKAAQLPPPFGDM 251

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-----EIALKAYLSAQNTPTKIEKHEAE 303
           L      + T P  T  G   + + +KR   G     +     ++  + +  + E+    
Sbjct: 252 LSAMPVGDVTPPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKR 311

Query: 304 YVKKLRSNAI 313
             +K+     
Sbjct: 312 LAEKIYDRIQ 321



 Score = 95.5 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 16/149 (10%), Positives = 53/149 (35%), Gaps = 3/149 (2%)

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDV 229
           +        +      I  ++++N+   ++  +   +            + F+      +
Sbjct: 282 QGQAQMRDEVHVRHILIKPSEIRNEEETKRLAEKIYDRIQNGEDFAELAKSFSEDPGSAL 341

Query: 230 SIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAY 287
           + G   ++  + L P+F+  + +  Q   + P+ T  G   + +  +R     + A +  
Sbjct: 342 NGGDLNWVDPNSLVPEFRQVMNETPQGELSKPFKTAYGWHVLEVLGRRSTDATDQAREQQ 401

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                   K ++    +++++R  A +  
Sbjct: 402 ALNVLRNRKYDEELQTWLRQIRDEAYVEI 430


>gi|330980962|gb|EGH79065.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 442

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/310 (13%), Positives = 97/310 (31%), Gaps = 17/310 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   ++    + +      +   ++ +VI    + +R+  ++               L
Sbjct: 14  LMLGALLLSGAVHAAVQPLDSVVAIVDNDVIMKSQMDQRVREVQQTIAKRGSGVPPAEAL 73

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +   +  LI+E L+ Q  E+SGI      +N      A+   +S E F + L   G+  N
Sbjct: 74  QPQVLDRLILENLQLQMGERSGIRVSDEELNQAIGTIAQRNNMSVEQFRAALAHDGLSYN 133

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             ++ +  + I   V +     +    + E+                       I     
Sbjct: 134 DAREQVRREMIISRVRQRRVAERIQVSQQEVKNFLASDMGKAQLSEEFHLANILIATPDS 193

Query: 193 QNQGFVQKRIKD---AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            +   +Q          +   +           +S  + +  G   +   + L P F   
Sbjct: 194 ASSDAIQAAAVKAKGIYDQLKKGADFTRLAATSSSSENALEGGDMGWRKAAQLPPPFGDM 253

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-----LSAQNTPTKIEKHEAE 303
           L      + T P  T  G   + + +KR   GE  ++       +  + +  + E     
Sbjct: 254 LSSMPVGDVTPPARTPGGFIILKLLEKRGGQGEAQMRDEVHVRHILIKPSEIRNEAETKR 313

Query: 304 YVKKLRSNAI 313
             +K+     
Sbjct: 314 LAEKIYDRIQ 323



 Score = 94.0 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 17/149 (11%), Positives = 55/149 (36%), Gaps = 3/149 (2%)

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDV 229
           +        +      I  ++++N+   ++  +   +            + F+      +
Sbjct: 284 QGEAQMRDEVHVRHILIKPSEIRNEAETKRLAEKIYDRIQNGEDFAELAKSFSEDPGSAL 343

Query: 230 SIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAY 287
           + G   ++  + L P+F+ ++ +  Q   + P+ TQ G   + +  +R     + A +  
Sbjct: 344 NGGDLNWVDPNSLVPEFRQVMSETPQGVLSKPFQTQYGWHVLEVLGRRSKDATDQAREQQ 403

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                   K ++    +++++R  A +  
Sbjct: 404 ALNVLRNRKYDEELQTWLRQIRDEAYVEI 432


>gi|289676168|ref|ZP_06497058.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. syringae FF5]
 gi|330938460|gb|EGH42067.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. pisi str. 1704B]
          Length = 440

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/310 (13%), Positives = 97/310 (31%), Gaps = 17/310 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   ++    + +      +   ++ +VI    + +R+  ++               L
Sbjct: 12  LMLGALLLSGAVHAAVQPLDSVVAIVDNDVIMKSQMDQRVREVQQTIAKRGSGVPPAEAL 71

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +   +  LI+E L+ Q  E+SGI      +N      A+   +S E F + L   G+  N
Sbjct: 72  QPQVLDRLILENLQLQMGERSGIRVSDEELNQAIGTIAQRNNMSVEQFRAALAHDGLSYN 131

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             ++ +  + I   V +     +    + E+                       I     
Sbjct: 132 DAREQVRREMIISRVRQRRVAERIQVSQQEVKNFLASDMGKAQLSEEFHLANILIATPDS 191

Query: 193 QNQGFVQKRIKD---AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            +   +Q          +   +           +S  + +  G   +   + L P F   
Sbjct: 192 ASSDAIQAAAVKAKGIYDQLKKGADFTRLAATSSSSENALEGGDMGWRKAAQLPPPFGDM 251

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-----LSAQNTPTKIEKHEAE 303
           L      + T P  T  G   + + +KR   GE  ++       +  + +  + E     
Sbjct: 252 LSSMPVGDVTPPARTPGGFIILKLLEKRGGQGEAQMRDEVHVRHILIKPSEIRNEAETKR 311

Query: 304 YVKKLRSNAI 313
             +K+     
Sbjct: 312 LAEKIYDRIQ 321



 Score = 94.0 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 17/149 (11%), Positives = 55/149 (36%), Gaps = 3/149 (2%)

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDV 229
           +        +      I  ++++N+   ++  +   +            + F+      +
Sbjct: 282 QGEAQMRDEVHVRHILIKPSEIRNEAETKRLAEKIYDRIQNGEDFAELAKSFSEDPGSAL 341

Query: 230 SIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAY 287
           + G   ++  + L P+F+ ++ +  Q   + P+ TQ G   + +  +R     + A +  
Sbjct: 342 NGGDLNWVDPNSLVPEFRQVMSETPQGVLSKPFQTQYGWHVLEVLGRRSKDATDQAREQQ 401

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                   K ++    +++++R  A +  
Sbjct: 402 ALNVLRNRKYDEELQTWLRQIRDEAYVEI 430


>gi|58583369|ref|YP_202385.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188575375|ref|YP_001912304.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|75508083|sp|Q5GWC1|SURA_XANOR RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|58427963|gb|AAW77000.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188519827|gb|ACD57772.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 463

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/320 (11%), Positives = 105/320 (32%), Gaps = 17/320 (5%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK- 67
           ++    ++    + I   I P+ S +      RI   ++ +V+   ++ + +  +K Q  
Sbjct: 1   MTKPFSVVLASLLAITSTISPLASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYA 60

Query: 68  -------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
                   +  L++  ++ LI+  L+    + SGI      +N      A+  G + +  
Sbjct: 61  GRENQLPPDDVLQRQVLERLILVKLQVGRADGSGIRVSDEELNRAIASIAQQNGTTVDGL 120

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
              L   G+G   F+  +  + I   + ++    +    E E+     +      + +L 
Sbjct: 121 RQKLAADGMGYADFRASVRDEIIVQRLRQSFAQSRISVSEGEVDTALTQQAATGSKYHLA 180

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKIHDVSIGKAQYLLE 239
             ++        +     QK++   +    +          +++   + +  G   +   
Sbjct: 181 HILIGLPEGATAEQIATGQKKVDGVKALIDKGELDFPAAAVRYSDSPNALEGGDLGWRSL 240

Query: 240 SDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK-------AYLSAQ 291
            ++   F   +          P     G + + + + RD       K        ++  +
Sbjct: 241 DEIPNAFAQLIRDMKPGQVAGPLRGPSGFQLLKLMEMRDANAGGEKKMVTEYNARHILVR 300

Query: 292 NTPTKIEKHEAEYVKKLRSN 311
               + E      +  +R+ 
Sbjct: 301 VGDNQTEAQAKAKIDTIRAR 320



 Score = 91.7 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 18/156 (11%), Positives = 41/156 (26%), Gaps = 3/156 (1%)

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
                                  +     Q +   + +I       +         ++ +
Sbjct: 276 EMRDANAGGEKKMVTEYNARHILVRVGDNQTEAQAKAKIDTIRARIVGGADFQATAKESS 335

Query: 224 SKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
                    G   +       P F + +   +    + P+ TQ G   +     R     
Sbjct: 336 EDTNSRGQGGDLGWFPADAFGPDFGKQVEGLADGAVSEPFRTQAGWHIVQRVGSRQTDVS 395

Query: 282 -IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
               +A +       K+E+    Y+++LR  A + Y
Sbjct: 396 AENQRAQVRETIGRRKLEEEYNRYLQELRGEAYVSY 431


>gi|320326011|gb|EFW82069.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|330985794|gb|EGH83897.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 440

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/310 (13%), Positives = 99/310 (31%), Gaps = 17/310 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   ++    + +      +   ++ +VI    + +R+  ++               L
Sbjct: 12  LMLGALLLSGAVHAAVQPLDSVVAIVDNDVIMKSQMDQRVREVQQTIAKRGSGVPPAEAL 71

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +   +  LI+E L+ Q  E+SGI    + +N      A+   +S E F + L   G+  N
Sbjct: 72  QPQVLDRLILENLQLQMGERSGIRVSDDELNQAIGTIAQRNNMSVEQFRAALAHDGLSYN 131

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             ++ +  + I   V +     +    + E+       +               I     
Sbjct: 132 DAREQVRREMIISRVRQRRVAERIQVSQQEVKNFLASDQGKAQLSEEFHLANILIATPDS 191

Query: 193 QNQGFVQKRIKD---AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            +   +Q          +   +           +S  + +  G   +   + L P F   
Sbjct: 192 ASSDAIQAAAVKAKGIYDQLKKGADFTRLAATTSSSENALEGGDMGWRKAAQLPPPFGDM 251

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-----EIALKAYLSAQNTPTKIEKHEAE 303
           L      + T P  T  G   + + +KR   G     +     ++  + +  + E+    
Sbjct: 252 LSAMPVGDVTPPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKR 311

Query: 304 YVKKLRSNAI 313
             +K+     
Sbjct: 312 LAEKIYDRIQ 321



 Score = 95.9 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 16/149 (10%), Positives = 53/149 (35%), Gaps = 3/149 (2%)

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDV 229
           +        +      I  ++++N+   ++  +   +            + F+      +
Sbjct: 282 QGQAQMRDEVHVRHILIKPSEIRNEEETKRLAEKIYDRIQNGEDFAELAKSFSEDPGSAL 341

Query: 230 SIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAY 287
           + G   ++  + L P+F+  + +  Q   + P+ T  G   + +  +R     + A +  
Sbjct: 342 NGGDLNWVDPNSLVPEFRQVMNETPQGELSKPFKTAYGWHVLEVLGRRSTDATDQAREQQ 401

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                   K ++    +++++R  A +  
Sbjct: 402 ALNVLRNRKYDEELQTWLRQIRDEAYVEI 430


>gi|320332054|gb|EFW87990.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 440

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/310 (13%), Positives = 99/310 (31%), Gaps = 17/310 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   ++    + +      +   ++ +VI    + +R+  ++               L
Sbjct: 12  LMLGALLLSGAVHAAVQPLDSVVAIVDNDVIMKSQMDQRVREVQQTIAKRGSGVPPAEAL 71

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +   +  LI+E L+ Q  E+SGI    + +N      A+   +S E F + L   G+  N
Sbjct: 72  QPQVLDRLILENLQLQMGERSGIRVSDDELNQAIGTIAQRNNMSVEQFRAALAHDGLSYN 131

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             ++ +  + I   V +     +    + E+       +               I     
Sbjct: 132 DAREQVRREMIISRVRQRRVAERIQVSQQEVKNFLASDQGKAQLSEKFHLANILIATPDS 191

Query: 193 QNQGFVQKRIKD---AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            +   +Q          +   +           +S  + +  G   +   + L P F   
Sbjct: 192 ASSDAIQAAAVKAKGIYDQLKKGADFTRLAATTSSSENALEGGDMGWRKAAQLPPPFGDM 251

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-----EIALKAYLSAQNTPTKIEKHEAE 303
           L      + T P  T  G   + + +KR   G     +     ++  + +  + E+    
Sbjct: 252 LSAMPVGDVTPPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKR 311

Query: 304 YVKKLRSNAI 313
             +K+     
Sbjct: 312 LAEKIYDRIQ 321



 Score = 95.9 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 16/149 (10%), Positives = 53/149 (35%), Gaps = 3/149 (2%)

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDV 229
           +        +      I  ++++N+   ++  +   +            + F+      +
Sbjct: 282 QGQAQMRDEVHVRHILIKPSEIRNEEETKRLAEKIYDRIQNGEDFAELAKSFSEDPGSAL 341

Query: 230 SIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAY 287
           + G   ++  + L P+F+  + +  Q   + P+ T  G   + +  +R     + A +  
Sbjct: 342 NGGDLNWVDPNSLVPEFRQVMNETPQGELSKPFKTAYGWHVLEVLGRRSTDATDQAREQQ 401

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                   K ++    +++++R  A +  
Sbjct: 402 ALNVLRNRKYDEELQTWLRQIRDEAYVEI 430


>gi|289663554|ref|ZP_06485135.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 463

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/320 (11%), Positives = 105/320 (32%), Gaps = 17/320 (5%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK- 67
           ++    ++    + I   I P+ S +      RI   ++ +V+   ++ + +  +K Q  
Sbjct: 1   MTKPFSVVLASLLAITSTISPLASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYA 60

Query: 68  -------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
                   +  L++  ++ LI+  L+    + SGI      +N      A+  G + +  
Sbjct: 61  GRENQLPPDDVLQRQVLERLILVKLQVGRADGSGIRVSDEELNRAIASIAQQNGTTVDGL 120

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
              L   G+G   F+  +  + I   + ++    +    E E+     +      + +L 
Sbjct: 121 RQKLAADGMGYADFRASVRDEIIVQRLRQSFAQSRISVSEGEVDTALAQQAATGSQYHLA 180

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKIHDVSIGKAQYLLE 239
             ++        +     QK++   +    +          +++   + +  G   +   
Sbjct: 181 HILIGLPEGATAEQIATGQKKVDGVKALIDKGELDFPAAAVRYSDSPNALEGGDLGWRSL 240

Query: 240 SDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK-------AYLSAQ 291
            ++   F   +          P     G + + + + RD       K        ++  +
Sbjct: 241 DEIPNAFAQLIRDMKPGQVAGPLRGPSGFQLLKLVEMRDANAGGEKKMVTEYNARHILVR 300

Query: 292 NTPTKIEKHEAEYVKKLRSN 311
               + E      +  +R+ 
Sbjct: 301 VGDNQTEAQAKAKIDTIRAR 320



 Score = 92.4 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 42/157 (26%), Gaps = 3/157 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +                       +     Q +   + +I       +         ++ 
Sbjct: 275 VEMRDANAGGEKKMVTEYNARHILVRVGDNQTEAQAKAKIDTIRARIVGGADFQATAKES 334

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           +         G   +       P F + +   +    + P+ TQ G   +     R    
Sbjct: 335 SEDTNSRGQGGDLGWFPADAFGPDFGKQVEGLADGAVSEPFRTQAGWHIVQRVGSRQTDV 394

Query: 281 E-IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                +A +       K+E+    Y+++LR  A + Y
Sbjct: 395 SAENQRAQVRETIGRRKLEEEYNRYLQELRGEAYVSY 431


>gi|86749597|ref|YP_486093.1| hypothetical protein RPB_2477 [Rhodopseudomonas palustris HaA2]
 gi|86572625|gb|ABD07182.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 309

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/306 (19%), Positives = 122/306 (39%), Gaps = 4/306 (1%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K     F   + C V   S    A +  +   +NGE IT+ DI +R  L KL        
Sbjct: 4   KFSFRIFAAALCCAVASWSGIGLARAQSVAVMVNGEPITNFDIEQRSKLDKLSNQ-SRTR 62

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           +  + ELI E +K +E +K G+    + ++  F   +    +S +     L  QGI    
Sbjct: 63  QQVLDELIDEKVKIREGKKFGVNPSDSDIDSSFASMSSRMRMSPDQMVKMLAAQGIRPGT 122

Query: 134 FKQYLAIQSIWPDVVKNDFMLK--YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
            K  +  + +W  +V+  F      G  +++     +   + +  E     +   +    
Sbjct: 123 LKSKIKAEMVWTSLVRGRFKDSLLVGEKDIQAQLAAKGGDDKSTTESFEYQMRPVVLIVS 182

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
             +     +  +   E+     + C   ++    + + +I        +DL P  + +L 
Sbjct: 183 RGSGAGAVEARRKEAEALRSRVQSCADADRIFKALPNAAIRATVVKTSADLPPALREILD 242

Query: 252 KSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
           K+     T P  T++GVE +A+C ++    +  +K  +  +    K +    +Y+++ R+
Sbjct: 243 KTPVGQMTAPEATKQGVEMVALCSRKPTTADTPMKREIREKMYAEKFQAKSKDYLRESRN 302

Query: 311 NAIIHY 316
            A+I Y
Sbjct: 303 AAMIEY 308


>gi|320354702|ref|YP_004196041.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobulbus
           propionicus DSM 2032]
 gi|320123204|gb|ADW18750.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobulbus
           propionicus DSM 2032]
          Length = 327

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/323 (15%), Positives = 105/323 (32%), Gaps = 23/323 (7%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDIS-----------KRIALLKL 65
              F L+  C+V + +  +  +  R    +N + IT  +++           +     +L
Sbjct: 4   RILFFLVSICLVFVSAASNANVVDRSVAIVNNDTITLSEVNELGRSFFKKVTEETPADRL 63

Query: 66  QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
            +   +     + +LI + L  QE +K GI      V+    +   N   + E F   L 
Sbjct: 64  PEALQQARNTVIDKLIDKKLLVQEAKKLGIQVSDQEVDNALQRVLANNKATMEQFHKELL 123

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
             G+ +  +K+ L  Q +   ++ ++   K    E +I    Q      V    +     
Sbjct: 124 AMGMTEKQYKEELRDQILSSKLINHEVRTKVVIPEEKILEYYQSNYTRQVGGGELHLQQI 183

Query: 186 SIPDNKL------QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
                +        +Q   +++I+ A E            +K++        G       
Sbjct: 184 GCTWGEPLANGVVPSQDDAKEKIRKAYEKAKDGDDFNELAKKYSDLPSAEDGGDLGTFQL 243

Query: 240 SDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR-----DLGGEIALKAYLSAQNT 293
            +L P  Q  + +      +       G  +  +   +           A+K  +  +  
Sbjct: 244 HELAPAMQQAVAQLKSGEISPVVQIDNGYHFFKLVSSQGGATVSKADYEAVKEEIRERLY 303

Query: 294 PTKIEKHEAEYVKKLRSNAIIHY 316
              +E    ++VK +R  A I  
Sbjct: 304 KQAMEARFKDWVKSIRDKAYIKI 326


>gi|301382733|ref|ZP_07231151.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           tomato Max13]
 gi|302063472|ref|ZP_07255013.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           tomato K40]
          Length = 440

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 105/313 (33%), Gaps = 19/313 (6%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   ++    + +      +   ++ +VI    + +R+  ++              +L
Sbjct: 12  LMLGALLLSGAVHAAVQPLDSVVAIVDNDVIMKSQMGQRVREVQQTIAKRGSGVPPAADL 71

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +   +  LI+E L+ Q  E+SGI    + +N      A+   +S E F + L   G+   
Sbjct: 72  QPQVLDRLILENLQLQMGERSGIRVSDDELNQAIGTIAQRNNMSVEQFRAALAHDGLSYE 131

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             ++ +  + I   V +     +    E E+       +               I     
Sbjct: 132 DAREQVRREMIISRVRQRRVAERIQVSEQEVKNFLASDQGKAQLSEEFHLANILIATPDS 191

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLE---KFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            +   +Q     A+    +L K  +  +     +S  + +  G   +   + L P F   
Sbjct: 192 ASSDAIQAAAVKAKSIYDQLKKGADFAKIAATTSSSENALEGGDMGWRKAAQLPPPFGDM 251

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-----EIALKAYLSAQNTPTKIEKHEAE 303
           L      + T P  T  G   + + +KR   G     +     ++  + +  + E+    
Sbjct: 252 LSSMPIGDVTPPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRSEEATKL 311

Query: 304 YVKKLRSNAIIHY 316
             +K+     I  
Sbjct: 312 LAQKIYER--IEN 322



 Score = 93.2 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 15/149 (10%), Positives = 52/149 (34%), Gaps = 3/149 (2%)

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDV 229
           +        +      I  ++++++   +   +   E            + F+      +
Sbjct: 282 QGQAQMRDEVHVRHILIKPSEIRSEEATKLLAQKIYERIENGEDFATLAKSFSEDPGSAL 341

Query: 230 SIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-Y 287
           + G   ++  + L P+F++++    Q   + P+ T  G   + +  +R        +   
Sbjct: 342 NGGDLNWVDPNSLVPEFRDVMSSTPQGELSKPFKTAYGWHVLEVLGRRATDATGQARDQQ 401

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             +     K ++    +++++R  A +  
Sbjct: 402 ALSVLRNRKYDEELQTWLRQIRDEAYVEI 430


>gi|325917324|ref|ZP_08179542.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325536458|gb|EGD08236.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 463

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 36/320 (11%), Positives = 104/320 (32%), Gaps = 17/320 (5%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK- 67
           ++    +L    ++I   + P+ S +      RI   ++ +V+   ++ + +  +K Q  
Sbjct: 1   MTKPFSVLLASLLVITSTVSPLASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYA 60

Query: 68  -------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
                   +  L++  ++ L++  L+    + SGI      +N      A+  G + +  
Sbjct: 61  GRENQLPPDDVLQRQVLERLVLVKLQVGRADGSGIRVSDEELNRAIASIAQQNGTTVDGL 120

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
              L   G+    F+  +  + I   + ++    +    E E+     +      + +L 
Sbjct: 121 RQKLAADGMAYGDFRSSVRDEIIVQRLRQSFAQSRISVSEGEVDTALAQQATTGSQYHLA 180

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKIHDVSIGKAQYLLE 239
             ++              QK++   +    +          +++   + +  G   +   
Sbjct: 181 HILVGLPEGATADQIATGQKKVDGVKALIDKGELDFSAAAVRYSDSPNALEGGDLGWRSL 240

Query: 240 SDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK-------AYLSAQ 291
            ++   F   +          P     G + + + + RD       K        ++  +
Sbjct: 241 DEIPNAFAQLIRDMQPGQVAGPLRGPSGFQLLKLVEMRDANAGGEKKMVTEYNARHILVR 300

Query: 292 NTPTKIEKHEAEYVKKLRSN 311
               + +      +  LR+ 
Sbjct: 301 IGDNQTDAQAKAKIDTLRAR 320



 Score = 93.6 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 17/157 (10%), Positives = 43/157 (27%), Gaps = 3/157 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +                       +     Q     + +I           +     ++ 
Sbjct: 275 VEMRDANAGGEKKMVTEYNARHILVRIGDNQTDAQAKAKIDTLRARIAGGAEFQATAKES 334

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIA-ICDKRDLG 279
           +         G   +       P F + +   +    + P+ TQ G   +  +  ++   
Sbjct: 335 SEDTNSRGQGGDLGWFPADAFGPDFGKQVEGLADGAVSEPFRTQAGWHIVQRVGSRQTDI 394

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                +A +       K+E+    Y+++LR  A + Y
Sbjct: 395 SAENQRAQIRETIGRRKLEEEYNRYLQELRGEAYVSY 431


>gi|84625193|ref|YP_452565.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|121956520|sp|Q2NZI6|SURA_XANOM RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|84369133|dbj|BAE70291.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 463

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/320 (11%), Positives = 105/320 (32%), Gaps = 17/320 (5%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK- 67
           ++    ++    + I   I P+ S +      RI   ++ +V+   ++ + +  +K Q  
Sbjct: 1   MTKPFSVVLASLLAITSTISPLASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYA 60

Query: 68  -------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
                   +  L++  ++ LI+  L+    + SGI      +N      A+  G + +  
Sbjct: 61  GRENQLPPDDVLQRQVLERLILVKLQVGRADGSGIRVSDEELNRAIASIAQQNGTTVDGL 120

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
              L   G+G   F+  +  + I   + ++    +    E E+     +      + +L 
Sbjct: 121 RQKLAADGMGYADFRASVRDEIIVQRLRQSFAQSRISVSEGEVDTALTQQAATGSKYHLA 180

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKIHDVSIGKAQYLLE 239
             ++        +     QK++   +    +          +++   + +  G   +   
Sbjct: 181 HILIGLPEGATAEQIATGQKKVDGVKTLIDKGELDFPAAAVRYSDSPNALEGGDLGWRSL 240

Query: 240 SDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK-------AYLSAQ 291
            ++   F   +          P     G + + + + RD       K        ++  +
Sbjct: 241 DEIPNAFAQLIRDMKPGQVAGPLRGPSGFQLLKLMEMRDANAGGEKKMVTEYNARHILVR 300

Query: 292 NTPTKIEKHEAEYVKKLRSN 311
               + E      +  +R+ 
Sbjct: 301 VGDNQTEAQAKAKIDTIRAR 320



 Score = 91.7 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 18/156 (11%), Positives = 41/156 (26%), Gaps = 3/156 (1%)

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
                                  +     Q +   + +I       +         ++ +
Sbjct: 276 EMRDANAGGEKKMVTEYNARHILVRVGDNQTEAQAKAKIDTIRARIVGGADFQATAKESS 335

Query: 224 SKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
                    G   +       P F + +   +    + P+ TQ G   +     R     
Sbjct: 336 EDTNSRGQGGDLGWFPADAFGPDFGKQVEGLADGAVSEPFRTQAGWHIVQRVGSRQTDVS 395

Query: 282 -IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
               +A +       K+E+    Y+++LR  A + Y
Sbjct: 396 AENQRAQVRETIGRRKLEEEYNRYLQELRGEAYVSY 431


>gi|331011659|gb|EGH91715.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 440

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/310 (13%), Positives = 99/310 (31%), Gaps = 17/310 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   ++    + +      +   ++ +VI    + +R+  ++               L
Sbjct: 12  LMLGALLLSGAVHAAVQPLDSVVAIVDNDVIMKSQMDQRVREVQQTIAKRGSGVPPAEAL 71

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +   +  LI+E L+ Q  E+SGI    + +N      A+   +S E F + L   G+  N
Sbjct: 72  QPQVLDRLILENLQLQMGERSGIRVSDDELNQAIGTIAQRNNMSVEQFRAALAHDGLSYN 131

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             ++ +  + I   V +     +    + E+       +               I     
Sbjct: 132 DAREQVRREMIISRVRQRRVAERIQVSQQEVKNFLASDQGKAQLSEEFHLANILIATPDS 191

Query: 193 QNQGFVQKRIKD---AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            +   +Q          +   +           +S  + +  G   +   + L P F   
Sbjct: 192 ASSDAIQAAAVKAKGIYDQLKKGADFTRLAATTSSSENALEGGDMGWRKAAQLPPPFGDM 251

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-----EIALKAYLSAQNTPTKIEKHEAE 303
           L      + T P  T  G   + + +KR   G     +     ++  + +  + E+    
Sbjct: 252 LSAMPVGDVTPPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKR 311

Query: 304 YVKKLRSNAI 313
             +K+     
Sbjct: 312 LAEKIYDRIQ 321



 Score = 95.9 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 16/149 (10%), Positives = 53/149 (35%), Gaps = 3/149 (2%)

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDV 229
           +        +      I  ++++N+   ++  +   +            + F+      +
Sbjct: 282 QGQAQMRDEVHVRHILIKPSEIRNEEETKRLAEKIYDRIQNGEDFAELAKSFSEDPGSAL 341

Query: 230 SIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAY 287
           + G   ++  + L P+F+  + +  Q   + P+ T  G   + +  +R     + A +  
Sbjct: 342 NGGDLNWIDPNSLVPEFRQVMNETPQGELSKPFKTAYGWHVLEVLGRRSTDATDQAREQQ 401

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                   K ++    +++++R  A +  
Sbjct: 402 ALNVLRNRKYDEELQTWLRQIRDEAYVEI 430


>gi|257483108|ref|ZP_05637149.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 442

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/310 (13%), Positives = 99/310 (31%), Gaps = 17/310 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   ++    + +      +   ++ +VI    + +R+  ++               L
Sbjct: 14  LMLGALLLSGAVHAAVQPLDSVVAIVDNDVIMKSQMDQRVREVQQTIAKRGSGVPPAEAL 73

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +   +  LI+E L+ Q  E+SGI    + +N      A+   +S E F + L   G+  N
Sbjct: 74  QPQVLDRLILENLQLQMGERSGIRVSDDELNQAIGTIAQRNNMSVEQFRAALAHDGLSYN 133

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             ++ +  + I   V +     +    + E+       +               I     
Sbjct: 134 DAREQVRREMIISRVRQRRVAERIQVSQQEVKNFLASDQGKAQLSEEFHLANILIATPDS 193

Query: 193 QNQGFVQKRIKD---AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            +   +Q          +   +           +S  + +  G   +   + L P F   
Sbjct: 194 ASSDAIQAAAVKAKGIYDQLKKGADFTRLAATTSSSENALEGGDMGWRKAAQLPPPFGDM 253

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-----EIALKAYLSAQNTPTKIEKHEAE 303
           L      + T P  T  G   + + +KR   G     +     ++  + +  + E+    
Sbjct: 254 LSAMPVGDVTPPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKR 313

Query: 304 YVKKLRSNAI 313
             +K+     
Sbjct: 314 LAEKIYDRIQ 323



 Score = 95.9 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 16/149 (10%), Positives = 53/149 (35%), Gaps = 3/149 (2%)

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDV 229
           +        +      I  ++++N+   ++  +   +            + F+      +
Sbjct: 284 QGQAQMRDEVHVRHILIKPSEIRNEEETKRLAEKIYDRIQNGEDFAELAKSFSEDPGSAL 343

Query: 230 SIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAY 287
           + G   ++  + L P+F+  + +  Q   + P+ T  G   + +  +R     + A +  
Sbjct: 344 NGGDLNWIDPNSLVPEFRQVMNETPQGELSKPFKTAYGWHVLEVLGRRSTDATDQAREQQ 403

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                   K ++    +++++R  A +  
Sbjct: 404 ALNVLRNRKYDEELQTWLRQIRDEAYVEI 432


>gi|110834907|ref|YP_693766.1| survival protein SurA [Alcanivorax borkumensis SK2]
 gi|122070614|sp|Q0VMV4|SURA_ALCBS RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|110648018|emb|CAL17494.1| Survival protein surA precursor (Peptidyl-prolyl cis-trans
           isomerase surA) [Alcanivorax borkumensis SK2]
          Length = 435

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 105/306 (34%), Gaps = 17/306 (5%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M +K   +     K      + +   ++P+ S     M  RI   +N   I   ++ +RI
Sbjct: 1   MINKTLHT-----KHTLLGLLAMAVLMIPVWSQAKVQMLDRIVAVVNDGAIMASELDERI 55

Query: 61  ALLKLQKI--------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
             + LQ             L +  +  +I+E L+ Q  E++GI  D  ++N      AR 
Sbjct: 56  NTIALQFQEKGQQLPSPAILREQVLDRMILERLQLQLAERAGIKVDEASLNEALAGIARQ 115

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
             +S EDF++ L + G     F++ +    +   + +     +    + E+         
Sbjct: 116 NDMSLEDFAATLREDGYSWTQFREQIRQDMVISRLQQRSVASRIQITDREVDRFLSSELG 175

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDV 229
             + +   R     I          + +    A+E   RL    +        +   + +
Sbjct: 176 KQMFQEDFRLGHILIRVPSEARPQQISQARAKAKEIIERLEAGSDFQQLAIALSDGPNAL 235

Query: 230 SIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
             G   +   +     F +N +   +   + P  +  G   + + D++    ++  + ++
Sbjct: 236 EGGDLGWRPAAQWPTLFAENAINLKKGEFSQPLRSGAGFHILKMIDRKGGAEKVVTQYHV 295

Query: 289 SAQNTP 294
                 
Sbjct: 296 RHVLIK 301



 Score = 80.5 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/279 (11%), Positives = 84/279 (30%), Gaps = 19/279 (6%)

Query: 51  ITDGDISKRIAL-LKLQKINGELE---------KIAVQELIVETLKKQEIEKSGITFDSN 100
           ITD ++ + ++  L  Q    +             A  + I +   K +     +   S+
Sbjct: 161 ITDREVDRFLSSELGKQMFQEDFRLGHILIRVPSEARPQQISQARAKAKEIIERLEAGSD 220

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                         L   D       Q             +  +   +++          
Sbjct: 221 FQQLAIALSDGPNALEGGDLGWRPAAQWPTLFAENAINLKKGEFSQPLRSGAGFHI---- 276

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
             +    +K     V        +    D     +   Q+ I+  +E      +      
Sbjct: 277 --LKMIDRKGGAEKVVTQYHVRHVLIKADALTSAEQAQQRAIRLHDEVAAGKRQFKETAA 334

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDL 278
           +F+       + G+  ++ + ++ P+F+ ++  +     +  + +Q G  ++ + D RD 
Sbjct: 335 EFSDDPGSARNGGELGWVNKGEMVPEFEQVMLNTPVGELSPVFESQFGWHFLRVDDIRDA 394

Query: 279 GGEIALKA-YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                 +    +      + E+    +V++ RS + +  
Sbjct: 395 DMSTEFRRMQATQALQKRRFEEELETWVQEKRSESYVDI 433


>gi|325276043|ref|ZP_08141858.1| SurA domain-containing protein [Pseudomonas sp. TJI-51]
 gi|324098828|gb|EGB96859.1| SurA domain-containing protein [Pseudomonas sp. TJI-51]
          Length = 428

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 106/309 (34%), Gaps = 16/309 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +L+   ++    + +     R+   ++ +V+    + +R+  ++             G L
Sbjct: 1   MLLGVALLSGAVHAAVQPLDRVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGSVPPAGAL 60

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           E+  ++ LIVE L+ Q  E+SGI      +N      A+  G+S + F + L   G+  +
Sbjct: 61  EQQVLERLIVENLQLQIGERSGIRITDEELNQAIGTIAQRNGMSLDQFRAALAHDGLSFD 120

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             +  +  + I   V +     +    E E+                 R     IP  + 
Sbjct: 121 DARDQVKREMIISRVRQRRVAERIQVSEQEVKNFLNSDMGKMQMSEEYRLANILIPTPEA 180

Query: 193 QNQGFVQKRIK---DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            N   +QK  +   +  +   +           ++  + +  G+  +   + L P F + 
Sbjct: 181 ANSADIQKAARQVGEVYQQLKQGADFGQLAIARSASENALEGGEMGWRKAAQLPPDFAKM 240

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG----EIALKAYLSAQNTPTKIEKHEAEY 304
           L        T P     G   + + +KR        +     ++  + +  + +    + 
Sbjct: 241 LSSMPVGEITQPIRIPNGFIILKLEEKRGGSENVLRDEVHVRHILIKPSEIRSDAATEQL 300

Query: 305 VKKLRSNAI 313
            ++L     
Sbjct: 301 AERLYERIK 309



 Score = 92.8 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/274 (9%), Positives = 84/274 (30%), Gaps = 9/274 (3%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELI-----VETLKKQEIEKSGITFDSNTVNYF 105
           +++ ++   +     +    E  ++A   LI       +   Q+  +             
Sbjct: 146 VSEQEVKNFLNSDMGKMQMSEEYRLA-NILIPTPEAANSADIQKAARQVGEVYQQLKQGA 204

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
                     ++E+     +             A       V +    ++  N  + +  
Sbjct: 205 DFGQLAIARSASENALEGGEMGWRKAAQLPPDFAKMLSSMPVGEITQPIRIPNGFIILKL 264

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
            +++  +  V    +      I  +++++    ++  +   E            + ++  
Sbjct: 265 EEKRGGSENVLRDEVHVRHILIKPSEIRSDAATEQLAERLYERIKNGEDFAELAKSYSED 324

Query: 226 I-HDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIA 283
               ++ G   ++  + L P+F+  +    Q   T P+ TQ G   + +  +R       
Sbjct: 325 PGSALNGGDLNWVDPNSLVPEFREQMANAQQGVVTKPFKTQYGWHVLEVLGRRATDSTEQ 384

Query: 284 LKA-YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            +           K ++    +++++R  A +  
Sbjct: 385 AREQQALNVLRNRKYDEELQTWLRQIRDEAYVEI 418


>gi|289670942|ref|ZP_06492017.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 463

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 36/320 (11%), Positives = 104/320 (32%), Gaps = 17/320 (5%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK- 67
           ++    ++    + I   + P  S +      RI   ++ +V+   ++ + +  +K Q  
Sbjct: 1   MTKPFSVVLASLLAITSTVSPFASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYA 60

Query: 68  -------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
                   +  L++  ++ L++  L+    + SGI      +N      A+  G + +  
Sbjct: 61  GRENQLPPDDVLQRQVLERLVLVKLQVGRADGSGIRVSDEELNRAIASIAQQNGTTVDGL 120

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
              L   G+G   F+  +  + I   + ++    +    E E+     +      + +L 
Sbjct: 121 RQKLAADGMGYADFRASVRDEIIVQRLRQSFAQSRISVSEGEVDTALAQQAATGSQYHLA 180

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKIHDVSIGKAQYLLE 239
             ++        +     QK++   +    +          +++   + +  G   +   
Sbjct: 181 HILIGLPEGATAEQIATGQKKVDGVKALIDKGELDFPAAAVRYSDSPNALEGGDLGWRSL 240

Query: 240 SDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK-------AYLSAQ 291
            ++   F   +          P     G + + + + RD       K        ++  +
Sbjct: 241 DEIPNAFAQLIRDMKPGQVAGPLRGPSGFQLLKLVEMRDANAGGEKKMVTEYNARHILVR 300

Query: 292 NTPTKIEKHEAEYVKKLRSN 311
               + E      +  +R+ 
Sbjct: 301 VGDNQTEAQAKAKIDTIRAR 320



 Score = 92.8 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 42/157 (26%), Gaps = 3/157 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +                       +     Q +   + +I       +         ++ 
Sbjct: 275 VEMRDANAGGEKKMVTEYNARHILVRVGDNQTEAQAKAKIDTIRARIVGGADFQATAKES 334

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           +         G   +       P F + +   +    + P+ TQ G   +     R    
Sbjct: 335 SEDTNSRGQGGDLGWFPADAFGPDFGKQVEGLADGAVSEPFRTQAGWHIVQRVGSRQTDV 394

Query: 281 E-IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                +A +       K+E+    Y+++LR  A + Y
Sbjct: 395 SAENQRAQVRETIGRRKLEEEYNRYLQELRGEAYVSY 431


>gi|78046458|ref|YP_362633.1| peptidylprolyl isomerase precursor [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325928237|ref|ZP_08189442.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas perforans
           91-118]
 gi|121956510|sp|Q3BX80|SURA_XANC5 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|78034888|emb|CAJ22533.1| peptidylprolyl isomerase precursor [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325541397|gb|EGD12934.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas perforans
           91-118]
          Length = 463

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 35/320 (10%), Positives = 105/320 (32%), Gaps = 17/320 (5%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK- 67
           ++    ++    + I   + P+ S +      RI   ++ +V+   ++ + +  +K Q  
Sbjct: 1   MTKPFSVVLASLLAITSTVSPLASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYA 60

Query: 68  -------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
                   +  L++  ++ L++  L+    + +GI      +N      A+  G + +  
Sbjct: 61  GRENQLPPDDVLQRQVLERLVLVKLQVSRADGNGIRVSDEELNRAIASIAQQNGTTVDGL 120

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
              L   G+G   F+  +  + I   + ++    +    E E+     +      + +L 
Sbjct: 121 RQKLAADGMGYADFRASVRDEIIVQRLRQSFAQSRISVSEGEVDTALAQQAATGSQYHLA 180

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKIHDVSIGKAQYLLE 239
             ++        +     QK++   +    +          +++   + +  G   +   
Sbjct: 181 HILIGLPEGATAEQIATGQKKVDGVKALIDKGELDFSAAAVRYSDSPNALEGGDLGWRSL 240

Query: 240 SDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK-------AYLSAQ 291
            ++   F   +          P     G + + + + RD       K        ++  +
Sbjct: 241 DEIPNAFAQLIRDMQPGQVAGPLRGPSGFQLLKLVEMRDANAGGEKKMVTEYHARHILVR 300

Query: 292 NTPTKIEKHEAEYVKKLRSN 311
               + E      +  +R+ 
Sbjct: 301 IGENQTEAQAKAKIDTIRAR 320



 Score = 93.2 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 43/157 (27%), Gaps = 3/157 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +                       +   + Q +   + +I       +         ++ 
Sbjct: 275 VEMRDANAGGEKKMVTEYHARHILVRIGENQTEAQAKAKIDTIRARIVGGADFQATAKES 334

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           +         G   +       P F + +   +    + P+ TQ G   +     R    
Sbjct: 335 SEDTNSRGQGGDLGWFPADAFGPDFGKQVESLTDGAVSEPFRTQAGWHIVQRVGSRQTDV 394

Query: 281 E-IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                +A +       K+E+    Y+++LR  A + Y
Sbjct: 395 SAENQRAQVRETIGRRKLEEEYNRYLQELRGEAYVSY 431


>gi|330719900|gb|EGG98375.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
           isomerase SurA) [gamma proteobacterium IMCC2047]
          Length = 429

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 50/314 (15%), Positives = 112/314 (35%), Gaps = 16/314 (5%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI-------- 60
           L+   K  TT  +L   C+ P + Y +     RI   +N ++I    + + I        
Sbjct: 2   LNSLRKYFTT--LLAALCLAPSMLYAAIQPLDRIAVIVNDDIIMQSQVQQAIDSAIRNLQ 59

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
              +       L +  V+ LI+E+L+ Q  E+ GI  D  ++N    + A    ++ E F
Sbjct: 60  QRNQQMPPKKVLIQQVVESLIMESLQLQIAERGGIRVDDTSLNEAISRIAAQNNMTLEQF 119

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT--VREY 178
              +  +G      ++ +  + +     +     +    + EI       +       ++
Sbjct: 120 QQAIIAEGSDYAATREQIRRELLTTRARQGSVGPRIQITDQEIDNFLDSAEGKALLASKF 179

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
            I  +L    +N    +   +K+ +   +            ++++   +    G   +  
Sbjct: 180 HIAHILVKPDNNTQPARQKAKKQAQALYQQLQSGADFAALTKQYSDGPNAEQGGSMGWRD 239

Query: 239 ESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGG---EIALKAYLSAQNTP 294
           ES L   F+N +K  +    + P  +  G   + + +KR       +     ++  Q   
Sbjct: 240 ESQLPSLFKNTVKALNDGEVSEPIASSNGFHLVKLLEKRGGTSIIQDQTQVRHILIQPNE 299

Query: 295 TKIEKHEAEYVKKL 308
            + E+   E +  L
Sbjct: 300 IRSERQAEEMIYDL 313



 Score = 80.5 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 16/141 (11%), Positives = 52/141 (36%), Gaps = 3/141 (2%)

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYL 237
             +     I  N+++++   ++ I D                 +++        G+  ++
Sbjct: 287 QTQVRHILIQPNEIRSERQAEEMIYDLFTRIQSGEDFAELARLYSADPGSRAKGGELGWI 346

Query: 238 LESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG-GEIALKAYLSAQNTPT 295
             + L P F + + +   +  + P+ ++ G   + +  +R    G  A +          
Sbjct: 347 TPAGLVPSFVKVMKETPVDGISAPFKSRYGWHILEVQGRRQQDIGADAARQQAREVIYRR 406

Query: 296 KIEKHEAEYVKKLRSNAIIHY 316
           K  +    +++++R++A +  
Sbjct: 407 KFNEELQLWLREIRNDAFVDI 427


>gi|121956435|sp|Q88QT4|SURA_PSEPK RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
          Length = 427

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 102/305 (33%), Gaps = 16/305 (5%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGELEKIA 76
             ++    + +     R+   ++ +V+    + +R+  ++               LE+  
Sbjct: 4   VALLSGAVHAAVQPLDRVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGVPPTSALEQQV 63

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           ++ LIVE L+ Q  E+SGI      +N      A+  G+S + F + L + G+  +  ++
Sbjct: 64  LERLIVENLQLQIGERSGIRITDEELNQAIGTIAQRNGMSLDQFRAALARDGLSFDDARE 123

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR---TVLFSIPDNKLQ 193
            +  + I   V +     +    E E+                 R    ++ +       
Sbjct: 124 QVKREMIISRVRQRRVAERIQVSEQEVKNFLASDLGKMQMSEEYRLANILIPTPEAANSD 183

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS 253
           +     +++ D  +   +           ++  + +  G+  +     L P F  +L   
Sbjct: 184 DIQKAARKVGDVYQQLRQGADFGQMAIANSASENALEGGEMGWRKAGQLPPDFAKMLSSM 243

Query: 254 Q-NNTTNPYVTQKGVEYIAICDKRDLGG----EIALKAYLSAQNTPTKIEKHEAEYVKKL 308
                T P     G   + + +KR        +     ++  + +  + E    +  ++L
Sbjct: 244 PVGEITQPIRIPNGFIILKLEEKRGGSENVLRDEVHVRHILIKPSEIRSEAATEQLAERL 303

Query: 309 RSNAI 313
                
Sbjct: 304 YDRIK 308



 Score = 91.7 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/233 (9%), Positives = 72/233 (30%), Gaps = 3/233 (1%)

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
            Q+  +                       ++E+     +             A       
Sbjct: 185 IQKAARKVGDVYQQLRQGADFGQMAIANSASENALEGGEMGWRKAGQLPPDFAKMLSSMP 244

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           V +    ++  N  + +   +++  +  V    +      I  ++++++   ++  +   
Sbjct: 245 VGEITQPIRIPNGFIILKLEEKRGGSENVLRDEVHVRHILIKPSEIRSEAATEQLAERLY 304

Query: 207 ESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQ 264
           +            + F+      ++ G   ++  + L P+F+  +    Q   T P+ TQ
Sbjct: 305 DRIKNGEDFGELAKSFSEDPGSALNGGDLNWVDPNSLVPEFREQMANAQQGVVTKPFKTQ 364

Query: 265 KGVEYIAICDKRDLGGEIALKA-YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            G   + +  +R        +     +     K ++    +++++R  A +  
Sbjct: 365 YGWHVLEVLGRRATDSTEQAREQQALSVLRNRKYDEELQTWLRQIRDEAYVEI 417


>gi|71275093|ref|ZP_00651380.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           Dixon]
 gi|71899689|ref|ZP_00681842.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           Ann-1]
 gi|170731077|ref|YP_001776510.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa M12]
 gi|71163902|gb|EAO13617.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           Dixon]
 gi|71730557|gb|EAO32635.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           Ann-1]
 gi|167965870|gb|ACA12880.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa M12]
          Length = 468

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/325 (12%), Positives = 112/325 (34%), Gaps = 24/325 (7%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMS--SRIRTTINGEVITDGDISKRIALLKLQ 66
           ++ +  ++ +  + +    +P+ S +        RI   ++  V+   ++ + I  +K Q
Sbjct: 1   MTRYFSIVLSLLLAVSCVFLPVASARQQQHQPLDRIVAVVDDNVVLKSELDRAIHNVKSQ 60

Query: 67  K--------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
                     +  L++  ++ LI+  L+    + +GI    + +N      A N   S +
Sbjct: 61  YVGHEGQLPPDEVLQRQVLERLILIKLQVARAQTNGIRVSDDELNQAISSIAENNKTSVD 120

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
                L  +GI    F+Q +  +     + +     +    E E+       +  +  +Y
Sbjct: 121 GLRQKLVAEGISFPEFRQSVRDEITVHHLRQGFAQSRIVVSEGEVDTAL--AQANSGAQY 178

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK--FASKIHDVSIGKAQY 236
            ++ +L ++PD     Q  V ++  +  +S +   +         ++   + +  G   +
Sbjct: 179 HLQHILVALPDGATSEQIAVAQKKINGIKSVIDKGELAFSAAAVRYSDSPNALESGDLGW 238

Query: 237 LLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRD---------LGGEIALKA 286
               ++   F  +           P     G + + + + RD                  
Sbjct: 239 RSLDEIPEAFAQMVQTMKPGQIVGPLRGTSGFQLLKLVEVRDSAAAAAGPRQMATEYHAR 298

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSN 311
           ++  + T  + E      +  LR+ 
Sbjct: 299 HILVRITEKQKEAQAKAKIDTLRAR 323



 Score = 86.3 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 18/156 (11%), Positives = 47/156 (30%), Gaps = 3/156 (1%)

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           E+  +                    +   + Q +   + +I                  +
Sbjct: 277 EVRDSAAAAAGPRQMATEYHARHILVRITEKQKEAQAKAKIDTLRARIAGGADFQTVARE 336

Query: 222 FASKIHDVS-IGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG 279
            +   ++ +  G   +         F N +K  +  N + P+ +  G   +     R   
Sbjct: 337 SSEDANNSNQGGDLGWFPSDAFGADFGNHVKALADGNVSEPFRSAAGWHIVQRLGTRQTD 396

Query: 280 G-EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             +   +A +       K+E+    ++++LRS A +
Sbjct: 397 VTKENQRAQIRDTIGQRKLEESYERFLRELRSEAYV 432


>gi|28199704|ref|NP_780018.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Temecula1]
 gi|182682448|ref|YP_001830608.1| SurA domain-containing protein [Xylella fastidiosa M23]
 gi|81724959|sp|Q87AJ0|SURA_XYLFT RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|28057825|gb|AAO29667.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Temecula1]
 gi|182632558|gb|ACB93334.1| SurA domain [Xylella fastidiosa M23]
 gi|307578730|gb|ADN62699.1| SurA domain-containing protein [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 463

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/324 (12%), Positives = 112/324 (34%), Gaps = 23/324 (7%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMS--SRIRTTINGEVITDGDISKRIALLKLQ 66
           ++ +  ++ +  + +    +P+ S +        RI   ++  V+   ++ + I  +K Q
Sbjct: 1   MTRYFSIVLSLLLAVSCVFLPVASARQQQHQPLDRIVAVVDDNVVLKSELDRAIHNVKSQ 60

Query: 67  K--------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
                     +  L++  ++ LI+  L+    + +GI    + +N      A N   S +
Sbjct: 61  YVGHEGQLPPDEVLQRQVLERLILIKLQVARAQTNGIRVSDDELNQAISSIAENNKTSVD 120

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
                L  +GI    F+Q +  +     + +     +    E E+       +  +  +Y
Sbjct: 121 GLRQKLVAEGISFPEFRQSVRDEITVHHLRQGFAQSRIVVSEGEVDTAL--AQANSGAQY 178

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK--FASKIHDVSIGKAQY 236
            ++ +L S+PD     Q  + ++  +  +S +   +         ++   + +  G   +
Sbjct: 179 HLQHILVSLPDGATSEQIAIAQKKINGIKSVIDKGELAFSAAAVRYSDSPNALESGDLGW 238

Query: 237 LLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLG--------GEIALKAY 287
               ++   F  +           P     G + + + + RD                 +
Sbjct: 239 RSLDEIPEAFAQMVQTMKPGQIVGPLRGTSGFQLLKLVEVRDSTAAAGPRQMATEYHARH 298

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSN 311
           +  + T  + E      +  LR+ 
Sbjct: 299 ILVRITDKQKEAQAKAKIDTLRAR 322



 Score = 85.1 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 42/138 (30%), Gaps = 3/138 (2%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS-IGKAQYLL 238
                  +     Q +   + +I                  + +   ++ +  G   +  
Sbjct: 294 YHARHILVRITDKQKEAQAKAKIDTLRARIAGGADFQTVARESSEDANNSNQGGDLGWFP 353

Query: 239 ESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGE-IALKAYLSAQNTPTK 296
                  F N +K  +  N + P+ +  G   +     R         +A +       K
Sbjct: 354 SDAFGADFGNHVKALADGNVSEPFRSAAGWHIVQRLGTRQTDVTRENQRAQIRDTIGQRK 413

Query: 297 IEKHEAEYVKKLRSNAII 314
           +E+    ++++LRS A +
Sbjct: 414 LEESYERFLRELRSEAYV 431


>gi|302185941|ref|ZP_07262614.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. syringae 642]
          Length = 440

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 98/313 (31%), Gaps = 19/313 (6%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   ++    + +      +   ++ +VI    + +R+  ++               L
Sbjct: 12  LMLGALLLSGAVHAAVQPLDSVVAIVDNDVIMKSQMDQRVREVQQTIAKRGSGVPPAEAL 71

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +   +  LI+E L+ Q  E+SGI    + +N      A+   +S E F + L   G+  N
Sbjct: 72  QPQVLDRLILENLQLQMGERSGIRVSDDELNQAIGTIAQRNNMSVEQFRAALAHDGLSYN 131

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             ++ +  + I   V +     +    + E+                       I     
Sbjct: 132 DAREQVRREMIISRVRQRRVAERIQVSQQEVKNFLASDMGKAQLSEEFHLANILIATPDS 191

Query: 193 QNQGFVQKRIKD---AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            +   +Q          +   +           +S  + +  G   +   + L P F   
Sbjct: 192 ASSEAIQAAAAKAKGIYDQLKKGADFTRLAATSSSSENALEGGDMGWRKAAQLPPPFGDM 251

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-----EIALKAYLSAQNTPTKIEKHEAE 303
           L      + T P  T  G   + + +KR   G     +     ++  + +  + E     
Sbjct: 252 LSSMPVGDVTPPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEAETKR 311

Query: 304 YVKKLRSNAIIHY 316
             +K+     I  
Sbjct: 312 LAQKIYDR--IEN 322



 Score = 96.7 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 17/149 (11%), Positives = 55/149 (36%), Gaps = 3/149 (2%)

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDV 229
           +        +      I  ++++N+   ++  +   +            + F+      +
Sbjct: 282 QGQAQMRDEVHVRHILIKPSEIRNEAETKRLAQKIYDRIENGEDFAELAKSFSEDPGSAL 341

Query: 230 SIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAY 287
           + G   ++  + L P+F+ ++ +  Q   + P+ TQ G   + +  +R     + A +  
Sbjct: 342 NGGDLNWVDPNSLVPEFRQVMSETPQGELSKPFQTQYGWHVLEVLGRRSTDATDQAREQQ 401

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                   K ++    +++++R  A +  
Sbjct: 402 ALNVLRNRKYDEELQTWLRQIRDEAYVEI 430


>gi|121956444|sp|Q4ZMG7|SURA_PSEU2 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
          Length = 428

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 95/309 (30%), Gaps = 19/309 (6%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GELEKIA 76
             ++    + +      +   ++ +VI    + +R+  ++               L+   
Sbjct: 4   ALLLSGAVHAAVQPLDSVVAIVDNDVIMKSQMDQRVREVQQTIAKRGSGVPPAEALQPQV 63

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           +  LI+E L+ Q  E+SGI      +N      A+   +S E F + L   G+  N  ++
Sbjct: 64  LDRLILENLQLQMGERSGIRVSDEELNQAIGTIAQRNNMSVEQFRAALAHDGLSYNDARE 123

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
            +  + I   V +     +    + E+                       I      +  
Sbjct: 124 QVRREMIISRVRQRRVAERIQVSQQEVKNFLASDMGKAQLSEEFHLANILIATPDSASSD 183

Query: 197 FVQKRIKD---AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKK 252
            +Q          +   +           +S  + +  G   +   + L P F   L   
Sbjct: 184 AIQAAAVKAKGIYDQLKKGADFTRLAATSSSSENALEGGDMGWRKAAQLPPPFGDMLSSM 243

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGG-----EIALKAYLSAQNTPTKIEKHEAEYVKK 307
              + T P  T  G   + + +KR   G     +     ++  + +  + E+      +K
Sbjct: 244 PVGDVTPPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKRLAQK 303

Query: 308 LRSNAIIHY 316
           +     I  
Sbjct: 304 IYDR--IEN 310



 Score = 94.4 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 17/149 (11%), Positives = 55/149 (36%), Gaps = 3/149 (2%)

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDV 229
           +        +      I  ++++N+   ++  +   +            + F+      +
Sbjct: 270 QGQAQMRDEVHVRHILIKPSEIRNEEETKRLAQKIYDRIENGEDFAELAKSFSEDPGSAL 329

Query: 230 SIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAY 287
           + G   ++  + L P+F+ ++ +  Q   + P+ TQ G   + +  +R     + A +  
Sbjct: 330 NGGDLNWVDPNSLVPEFRQVMSETPQGVLSKPFQTQYGWHVLEVLGRRSTDATDQAREQQ 389

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                   K ++    +++++R  A +  
Sbjct: 390 ALNVLRNRKYDEELQTWLRQIRDEAYVEI 418


>gi|294625755|ref|ZP_06704374.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294664833|ref|ZP_06730154.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292599925|gb|EFF44043.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292605389|gb|EFF48719.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 463

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 35/320 (10%), Positives = 105/320 (32%), Gaps = 17/320 (5%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK- 67
           ++    ++    + I   + P+ S +      RI   ++ +V+   ++ + +  +K Q  
Sbjct: 1   MTKPFSVVLASLLAITSTVSPLASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYA 60

Query: 68  -------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
                   +  L++  ++ L++  L+    + +GI      +N      A+  G + +  
Sbjct: 61  GRENQLPPDDVLQRQVLERLVLVKLQVSRADGNGIRVSDEELNRAIASIAQQNGTTVDGL 120

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
              L   G+G   F+  +  + I   + ++    +    E E+     +      + +L 
Sbjct: 121 RQKLAADGMGYADFRASVRDEIIVQRLRQSFAQSRISVSEGEVDTALAQQAATGSQYHLA 180

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKIHDVSIGKAQYLLE 239
             ++        +     QK++   +    +          +++   + +  G   +   
Sbjct: 181 HILIGLPEGANAEQIATGQKKVDGVKALIDKGELDFSAAAVRYSDSPNALEGGDLGWRSL 240

Query: 240 SDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK-------AYLSAQ 291
            ++   F   +          P     G + + + + RD       K        ++  +
Sbjct: 241 DEIPNAFAQLIRDMQPGQVAGPLRGPSGFQLLKLVEMRDANAGGEKKMVTEYHARHILVR 300

Query: 292 NTPTKIEKHEAEYVKKLRSN 311
               + E      +  +R+ 
Sbjct: 301 IGDNQTEAQAKAKIDTIRAR 320



 Score = 93.6 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 42/157 (26%), Gaps = 3/157 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +                       +     Q +   + +I       +         ++ 
Sbjct: 275 VEMRDANAGGEKKMVTEYHARHILVRIGDNQTEAQAKAKIDTIRARIVGGADFQATAKES 334

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           +         G   +       P F + +   +    + P+ TQ G   +     R    
Sbjct: 335 SEDTNSRGQGGDLGWFPADAFGPDFGKQVESLTDGAVSEPFRTQAGWHIVQRVGSRQTDV 394

Query: 281 E-IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                +A +       K+E+    Y+++LR  A + Y
Sbjct: 395 SAENQRAQVRETIGRRKLEEEYNRYLQELRGEAYVSY 431


>gi|21241635|ref|NP_641217.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|81804731|sp|Q8PP23|SURA_XANAC RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|21106996|gb|AAM35753.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 463

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 35/320 (10%), Positives = 105/320 (32%), Gaps = 17/320 (5%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK- 67
           ++    ++    + I   + P+ S +      RI   ++ +V+   ++ + +  +K Q  
Sbjct: 1   MTKPFSVVLASLLAITSTVSPLASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYA 60

Query: 68  -------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
                   +  L++  ++ L++  L+    + +GI      +N      A+  G + +  
Sbjct: 61  GRENQLPPDDVLQRQVLERLVLVKLQVSRADGNGIRVSDEELNRAIASIAQQNGTTVDGL 120

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
              L   G+G   F+  +  + I   + ++    +    E E+     +      + +L 
Sbjct: 121 RQKLAADGMGYADFRASVRDEIIVQRLRQSFAQSRISVSEGEVDTALAQQAATGSQYHLA 180

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKIHDVSIGKAQYLLE 239
             ++        +     QK++   +    +          +++   + +  G   +   
Sbjct: 181 HILIGLPEGANAEQIATGQKKVDGVKALIDKGELDFSAAAVRYSDSPNALEGGDLGWRSL 240

Query: 240 SDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK-------AYLSAQ 291
            ++   F   +          P     G + + + + RD       K        ++  +
Sbjct: 241 DEIPNAFAQLIRDMQPGQVAGPLRGPSGFQLLKLVEMRDANAGGEKKMVTEYHARHILVR 300

Query: 292 NTPTKIEKHEAEYVKKLRSN 311
               + E      +  +R+ 
Sbjct: 301 IGDNQTEAQAKAKIDTIRAR 320



 Score = 93.6 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 42/157 (26%), Gaps = 3/157 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +                       +     Q +   + +I       +         ++ 
Sbjct: 275 VEMRDANAGGEKKMVTEYHARHILVRIGDNQTEAQAKAKIDTIRARIVGGADFQATAKES 334

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           +         G   +       P F + +   +    + P+ TQ G   +     R    
Sbjct: 335 SEDTNSRGQGGDLGWFPADAFGPDFGKQVESLTDGAVSEPFRTQAGWHIVQRVGSRQTDV 394

Query: 281 E-IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                +A +       K+E+    Y+++LR  A + Y
Sbjct: 395 SAENQRAQVRETIGRRKLEEEYNRYLQELRGEAYVSY 431


>gi|91776502|ref|YP_546258.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacillus
           flagellatus KT]
 gi|122070650|sp|Q1GZC0|SURA_METFK RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|91710489|gb|ABE50417.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacillus
           flagellatus KT]
          Length = 437

 Score =  140 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 104/317 (32%), Gaps = 16/317 (5%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING 70
            F  +     + + F           A   RI   ++  VIT+ ++  RI  +  Q    
Sbjct: 5   VFKTIARHGLIALFFFFSISAMAAEVAKMDRIVAIVDQGVITEKELEDRIQTVIAQLEKQ 64

Query: 71  --------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
                    L+K  ++ LI + L+ Q   ++G+  D   ++    + A    LS  +F  
Sbjct: 65  GTQLPPRDVLQKQILERLINDRLQLQYAAQTGLRVDDAQLDKTIERIAEQNKLSTGEFRK 124

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
            L+ +GI    F++ +  + I   + + +   +    E EI        +    +     
Sbjct: 125 ALEAEGIPYRKFREDIRNEIILARLREREVDNRVNVTESEIDNFLTTQSSRNDIQDEFEV 184

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK---FASKIHDVSIGKAQYLLE 239
               I   +      +QK    AE +   L    +  +    ++   + +  G   +   
Sbjct: 185 AHILIRAPEESTPEELQKLKAKAEAALKELQSGADFAQVSAGYSDAPNALEGGILGWKAS 244

Query: 240 SDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTP 294
           S L   F   L        +    +  G   + + ++R     L  +     ++  + + 
Sbjct: 245 SQLPSLFVDALQALQPGQLSPVLRSPNGYHILKLLNRRGGSSPLVVDQTHVRHILIKLSE 304

Query: 295 TKIEKHEAEYVKKLRSN 311
              E    + +  ++  
Sbjct: 305 VVSELEAEQKINSIKER 321



 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 48/140 (34%), Gaps = 2/140 (1%)

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
                   I  +++ ++   +++I   +E             +++      + G   +  
Sbjct: 292 QTHVRHILIKLSEVVSELEAEQKINSIKERLDHGADFAELARQYSEDASANNGGDLGWTN 351

Query: 239 ESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG-GEIALKAYLSAQNTPTK 296
             D  P F+  +     N  + P  T  G   I + ++R     + + +     +    K
Sbjct: 352 AGDTVPAFEKAMNALDINEISAPVRTPFGWHIIQVLERRKQDMTQESARLKARQEIRARK 411

Query: 297 IEKHEAEYVKKLRSNAIIHY 316
            +    +++ +LR  A + Y
Sbjct: 412 ADDAFQDWLSELRDRAYVEY 431


>gi|319943017|ref|ZP_08017300.1| peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis ATCC
           51599]
 gi|319743559|gb|EFV95963.1| peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis ATCC
           51599]
          Length = 491

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 110/286 (38%), Gaps = 11/286 (3%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQK---------INGELEKIAVQELIVET 84
                  RI   +N  VIT+ ++  +I L++ +             EL K  ++++I++ 
Sbjct: 79  PGIESLDRIVAVVNQGVITESELQAQIHLIEGRAAQTPGAGVPPPDELRKQVLEQMILQL 138

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
            ++Q     G+      V+      A+N GLS +  +  L  +G+  + F++ L  + + 
Sbjct: 139 AQEQYAADYGLKPSDAEVDRAVADVAQNNGLSTQQLTERLKDEGVSLDTFRRQLVAEIVS 198

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK-RIK 203
             + + +        E EI A   K   ++  EY IR +L  +P+   Q +   QK R  
Sbjct: 199 ARLRERETASNVSISEGEIDAELAKSGKVSQPEYDIRQILLKLPEGADQKEVARQKARAD 258

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYV 262
           +      +        ++ +      + G   +    DL   F + ++K      + P  
Sbjct: 259 ELVAKARKGADFGALAQENSEAGDAATGGSMGWRKADDLPGLFADTVRKLKPGEISAPVR 318

Query: 263 TQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
           +  G   + + D+RD G       +      P    +  AE  ++L
Sbjct: 319 SPAGFHILKLQDRRDGGATTVELTHARHILLPANSPETAAEAERRL 364



 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/274 (11%), Positives = 80/274 (29%), Gaps = 6/274 (2%)

Query: 48  GEVITDGDISKRIALLKLQKINGELEKIAVQEL---IVETLKKQEIEKSGITFDSNTVNY 104
              I++G+I   +A            +  + +L     +    ++  ++           
Sbjct: 209 NVSISEGEIDAELAKSGKVSQPEYDIRQILLKLPEGADQKEVARQKARADELVAKARKGA 268

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
            F   A+    + +  +          +      A         +    ++       + 
Sbjct: 269 DFGALAQENSEAGDAATG-GSMGWRKADDLPGLFADTVRKLKPGEISAPVRSPAGFHILK 327

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
              ++    T  E      +    ++        ++      +            ++F+S
Sbjct: 328 LQDRRDGGATTVELTHARHILLPANSPETAAEAERRLSLFRRDIEAGKADFAKLAKEFSS 387

Query: 225 KIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKR-DLGGEI 282
                  G   +L   D  P+F+  +K       + P  TQ GV  + +  +R D     
Sbjct: 388 DGSAAKGGDLGWLYPGDTVPEFEQAMKSLHDGEISEPVQTQFGVHLVQVLGRRTDTESPE 447

Query: 283 ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            L+    A+    K  +   +++++LR    + Y
Sbjct: 448 RLRNAARAKLREAKGGEAYQQWLRELRDRTYVEY 481


>gi|298485302|ref|ZP_07003394.1| Survival protein surA precursor (Peptidyl-prolyl cis-trans
           isomerase surA) [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298160152|gb|EFI01181.1| Survival protein surA precursor (Peptidyl-prolyl cis-trans
           isomerase surA) [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 428

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/306 (13%), Positives = 96/306 (31%), Gaps = 17/306 (5%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GELEKIA 76
             ++    + +      +   ++ +VI    + +R+  ++               L+   
Sbjct: 4   ALLLSGAVHAAVQPLDSVVAIVDNDVIMKSQMDQRVREVQQTIAKRGSGVPPAEALQPQV 63

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           +  LI+E L+ Q  E+SGI    + +N      A+   +S E F + L   G+  N  ++
Sbjct: 64  LDRLILENLQLQMGERSGIRVSDDELNQAIGTIAQRNNMSVEQFRAALAHDGLSYNDARE 123

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
            +  + I   V +     +    + E+       +               I      +  
Sbjct: 124 QVRREMIISRVRQRRVAERIQVSQQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSD 183

Query: 197 FVQKRIKD---AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKK 252
            +Q          +   +           +S  + +  G   +   + L P F   L   
Sbjct: 184 AIQAAAVKAKGIYDQLKKGADFTRLAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSAM 243

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGG-----EIALKAYLSAQNTPTKIEKHEAEYVKK 307
              + T P  T  G   + + +KR   G     +     ++  + +  + E+      +K
Sbjct: 244 PVGDVTPPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKRLAEK 303

Query: 308 LRSNAI 313
           +     
Sbjct: 304 IYDRIQ 309



 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 16/149 (10%), Positives = 53/149 (35%), Gaps = 3/149 (2%)

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDV 229
           +        +      I  ++++N+   ++  +   +            + F+      +
Sbjct: 270 QGQAQMRDEVHVRHILIKPSEIRNEEETKRLAEKIYDRIQNGEDFAELAKSFSEDPGSAL 329

Query: 230 SIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAY 287
           + G   ++  + L P+F+  + +  Q   + P+ T  G   + +  +R     + A +  
Sbjct: 330 NGGDLNWVDPNSLVPEFRQVMNETPQGELSKPFKTAYGWHVLEVLGRRSTDATDQAREQQ 389

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                   K ++    +++++R  A +  
Sbjct: 390 ALNVLRNRKYDEELQTWLRQIRDEAYVEI 418


>gi|170723956|ref|YP_001751644.1| SurA domain-containing protein [Pseudomonas putida W619]
 gi|169761959|gb|ACA75275.1| SurA domain [Pseudomonas putida W619]
          Length = 441

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/309 (13%), Positives = 109/309 (35%), Gaps = 16/309 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGEL 72
           VL+   ++    + +     R+   ++ +V+    + +R+  ++               L
Sbjct: 14  VLLGAVLLSGAVHAAVQPLDRVVAIVDNDVVMQSQLDQRVQEVQQTIAKRGGGVPPTSAL 73

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           E+  ++ LIVE L+ Q  E+SGI      +N      A+  G+S + F + L + G+  +
Sbjct: 74  EQQVLERLIVENLQLQIGERSGIRITDEELNQAIGTIAQRNGMSLDQFRAALARDGLSFD 133

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR---TVLFSIPD 189
             ++ +  + I   V +     +    E E+                 R    ++ +   
Sbjct: 134 DAREQVKREMIISRVRQRRVAERIQVSEQEVKNFLASDMGKMQMSEDYRLANILIPTPEG 193

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
               +     +++ D  +   +           ++  + +  G+  +   + L P+F + 
Sbjct: 194 ANSDDIQKAARKVGDVYQQLRQGADFGQMAIANSASENALEGGEMGWRKAAQLPPEFAKL 253

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG----EIALKAYLSAQNTPTKIEKHEAEY 304
           L   +  + T P     G   I + +KR        +     ++  + +  + E    + 
Sbjct: 254 LSSMATGDITQPLRIPSGFIIIKLEEKRGGSENVLRDEVHVRHILIKPSEIRSEAATEQL 313

Query: 305 VKKLRSNAI 313
            ++L     
Sbjct: 314 AERLYERIK 322



 Score = 90.9 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 59/165 (35%), Gaps = 3/165 (1%)

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
           +  +  + I   +++  +  V    +      I  ++++++   ++  +   E       
Sbjct: 267 RIPSGFIIIKLEEKRGGSENVLRDEVHVRHILIKPSEIRSEAATEQLAERLYERIKGGED 326

Query: 215 DCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAI 272
                + F+      ++ G   ++  + L P+F+  +    Q   T P+ TQ G   + +
Sbjct: 327 FAELAKSFSEDPGSALNGGDLNWVDPNSLVPEFREQMANAQQGVVTKPFKTQYGWHVLEV 386

Query: 273 CDKRDLGGEIALKA-YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             +R        +           K ++    +++++R  A +  
Sbjct: 387 LGRRATDSTEQAREQQAMNVLRNRKYDEELQTWLRQIRDEAYVEI 431


>gi|213967673|ref|ZP_03395820.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           tomato T1]
 gi|213927449|gb|EEB60997.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           tomato T1]
          Length = 428

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 102/309 (33%), Gaps = 19/309 (6%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GELEKIA 76
             ++    + +      +   ++ +VI    + +R+  ++              +L+   
Sbjct: 4   ALLLSGAVHAAVQPLDSVVAIVDNDVIMKSQMGQRVREVQQTIAKRGSGVPPAADLQPQV 63

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           +  LI+E L+ Q  E+SGI    + +N      A+   +S E F + L   G+     ++
Sbjct: 64  LDRLILENLQLQMGERSGIRVSDDELNQAIGTIAQRNNMSVEQFRAALAHDGLSYEDARE 123

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
            +  + I   V +     +    E E+       +               I      +  
Sbjct: 124 QVRREMIISRVRQRRVAERIQVSEQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSD 183

Query: 197 FVQKRIKDAEESRLRLPKDCNKLE---KFASKIHDVSIGKAQYLLESDLHPQF-QNLLKK 252
            +Q     A+    +L K  +  +     +S  + +  G   +   + L P F   L   
Sbjct: 184 AIQAAAVKAKSIYDQLKKGADFAKIAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSSM 243

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGG-----EIALKAYLSAQNTPTKIEKHEAEYVKK 307
              + T P  T  G   + + +KR   G     +     ++  + +  + E+      +K
Sbjct: 244 PIGDVTPPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRSEEATKLLAQK 303

Query: 308 LRSNAIIHY 316
           +     I  
Sbjct: 304 IYER--IEN 310



 Score = 92.4 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 15/149 (10%), Positives = 52/149 (34%), Gaps = 3/149 (2%)

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDV 229
           +        +      I  ++++++   +   +   E            + F+      +
Sbjct: 270 QGQAQMRDEVHVRHILIKPSEIRSEEATKLLAQKIYERIENGEDFATLAKSFSEDPGSAL 329

Query: 230 SIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-Y 287
           + G   ++  + L P+F++++    Q   + P+ T  G   + +  +R        +   
Sbjct: 330 NGGDLNWVDPNSLVPEFRDVMSSTPQGELSKPFKTAYGWHVLEVLGRRATDATGQARDQQ 389

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             +     K ++    +++++R  A +  
Sbjct: 390 ALSVLRNRKYDEELQTWLRQIRDEAYVEI 418


>gi|71733994|ref|YP_272934.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554547|gb|AAZ33758.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 440

 Score =  139 bits (349), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 42/310 (13%), Positives = 99/310 (31%), Gaps = 17/310 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   ++    + +      +   ++ +VI    + +R+  ++               L
Sbjct: 12  LMLGALLLSGAVHAAVQPLESVVAIVDNDVIMKSQMDQRVREVQQTIAKRGSGVPPAEAL 71

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +   +  LI+E L+ Q  E+SGI    N +N      A+   +S E F + L   G+  N
Sbjct: 72  QPQVLDRLILENLQLQMGERSGIRVSDNELNQAIGTIAQRNNMSVEQFRAALAHDGLSYN 131

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             ++ +  + I   V +     +    + E+       +               I     
Sbjct: 132 DAREQVRREMIISRVRQRRVAERIQVSQQEVKNFLASDQGKAQLSEEFHLANILIATPDS 191

Query: 193 QNQGFVQKRIKD---AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            +   +Q          +   +           +S  + +  G   +   + L P F   
Sbjct: 192 ASSDAIQAAAVKAKGIYDQLKKGADFTRLAATTSSSENALEGGDMGWRKAAQLPPPFGDM 251

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-----EIALKAYLSAQNTPTKIEKHEAE 303
           L      + T P  T  G   + + +KR   G     +     ++  + +  + E+    
Sbjct: 252 LSAMPVGDVTPPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKR 311

Query: 304 YVKKLRSNAI 313
             +K+     
Sbjct: 312 LAEKIYDRIQ 321



 Score = 95.5 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 16/149 (10%), Positives = 53/149 (35%), Gaps = 3/149 (2%)

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDV 229
           +        +      I  ++++N+   ++  +   +            + F+      +
Sbjct: 282 QGQAQMRDEVHVRHILIKPSEIRNEEETKRLAEKIYDRIQNGEDFAELAKSFSEDPGSAL 341

Query: 230 SIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAY 287
           + G   ++  + L P+F+  + +  Q   + P+ T  G   + +  +R     + A +  
Sbjct: 342 NGGDLNWVDPNSLVPEFRQVMNETPQGELSKPFKTAYGWHVLEVLGRRSTDATDQAREQQ 401

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                   K ++    +++++R  A +  
Sbjct: 402 ALNVLRNRKYDEELQTWLRQIRDEAYVEI 430


>gi|255020576|ref|ZP_05292639.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
           isomerase SurA) [Acidithiobacillus caldus ATCC 51756]
 gi|254969961|gb|EET27460.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
           isomerase SurA) [Acidithiobacillus caldus ATCC 51756]
          Length = 479

 Score =  139 bits (349), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 36/288 (12%), Positives = 107/288 (37%), Gaps = 13/288 (4%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE---------LEKIAVQELIVET 84
            +     ++   +N ++IT   +++R+A ++ +    +         L +  +Q++I++ 
Sbjct: 68  SNAEDLDKVVAVVNDDIITSLQLAQRVAAIRARLQQQDPNALPPEEVLRRQVLQQMILQD 127

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
           ++ Q  +++GI  D  T++      AR   L+ +     L +QG     F+  L  + + 
Sbjct: 128 VELQIAKRAGIKVDQATLDQAIGNIARANNLTPDQLRQALAQQGQSWTQFEDDLRDRILV 187

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI-K 203
             + + +   +      E+    +++K +    + ++ +   +PDN   +     +R  +
Sbjct: 188 DRLTQQEVESRIHIGPDEVKTFARQLKELGGVSFDLQQIFIPLPDNPTPDAISAARRQAQ 247

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYV 262
           +  +             + +S    +  G+  ++  ++L P   Q L+       +    
Sbjct: 248 EIRDRLEAGASFSRLAAEVSSSRDALQGGRLGWVKAAELPPAISQTLMSLKPGEISPVIP 307

Query: 263 TQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
              G     + D +  +        A +  + +     +      + +
Sbjct: 308 GPTGFHIFKVLDTKHEEPTVTEVKAAAIVLRASNGLQLQEAEARAQDI 355



 Score = 75.1 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 13/124 (10%), Positives = 40/124 (32%), Gaps = 3/124 (2%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYLLESDLHPQFQNLLKK-S 253
              + R +D E +     +      +++       + G+  ++    L  + +  L    
Sbjct: 346 QEAEARAQDIETALQGGTRFSELARRYSQDPSTAAAGGELGWVAPGKLPDELERTLLALQ 405

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
               ++P      +  +    +R +   +  + A    Q       +   E+ +++R  A
Sbjct: 406 PGAVSSPVRVGDAIYILQAQAQRQVPVGDEQILAAARMQLYNRIARQRLEEWQRRIRDGA 465

Query: 313 IIHY 316
            +  
Sbjct: 466 YVEI 469


>gi|289627686|ref|ZP_06460640.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649005|ref|ZP_06480348.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868493|gb|EGH03202.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 440

 Score =  139 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 41/310 (13%), Positives = 100/310 (32%), Gaps = 17/310 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   ++    + +      +   ++ +VI    + +R+  ++               L
Sbjct: 12  LMLGALLLSGAVHAAVQPLDSVVAIVDNDVIMKSQMDQRVREVQQTIAKRGSGVPPAEAL 71

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +   +  LI+E L+ Q  E+SGI    + +N      A+   +S E F + L   G+  N
Sbjct: 72  QPQVLDRLILENLQLQMGERSGIRVSDDELNQAIGTIAQRNNMSVEQFRAALAHDGLSYN 131

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             ++ +  + I   V +     +    + E+       +               I     
Sbjct: 132 DAREQVRREMIISRVRQRRVAERIQVSQQEVKNFLASDQGKAQLSEEFHLANILIATPDS 191

Query: 193 QNQGFVQKRIKD---AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            +   +Q          +   +           +S  + +  G   +   + L P F   
Sbjct: 192 ASSDAIQAAAVKAKGIYDQLKKGADFTRLAATTSSSENALEGGDMGWRKAAQLPPPFGDM 251

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-----EIALKAYLSAQNTPTKIEKHEAE 303
           L     ++ T P  T  G   + + +KR   G     +     ++  + +  + E+    
Sbjct: 252 LSAMPVDDVTPPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKR 311

Query: 304 YVKKLRSNAI 313
             +K+     
Sbjct: 312 LAEKIYDRIQ 321



 Score = 95.5 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 16/149 (10%), Positives = 53/149 (35%), Gaps = 3/149 (2%)

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDV 229
           +        +      I  ++++N+   ++  +   +            + F+      +
Sbjct: 282 QGQAQMRDEVHVRHILIKPSEIRNEEETKRLAEKIYDRIQNGEDFAELAKSFSEDPGSAL 341

Query: 230 SIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAY 287
           + G   ++  + L P+F+  + +  Q   + P+ T  G   + +  +R     + A +  
Sbjct: 342 NGGDLNWVDPNSLVPEFRQVMNETPQGELSKPFKTAYGWHVLEVLGRRSTDATDQAREQQ 401

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                   K ++    +++++R  A +  
Sbjct: 402 ALNVLRNRKYDEELQTWLRQIRDEAYVEI 430


>gi|330955092|gb|EGH55352.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           Cit 7]
          Length = 440

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 39/310 (12%), Positives = 98/310 (31%), Gaps = 17/310 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   ++    + +      +   ++ +VI    + +R+  ++               L
Sbjct: 12  LMLGALLLSGAVHAAVQPLDSVVAIVDNDVIMKSQMDQRVREVQQTIAKRGSGVPPAEAL 71

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +   +  LI+E L+ Q  E+SGI    + +N      A+   +S + F + L   G+  N
Sbjct: 72  QPQVLDRLILENLQLQMGERSGIRVSDDELNQAIGTIAQRNNMSVDQFRAALAHDGLSYN 131

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR---TVLFSIPD 189
             ++ +  + I   V +     +    + E+                      ++ +   
Sbjct: 132 DAREQVRREMIISRVRQRRVAERIQVSQQEVKNFLASDLGKAQLSEEFHLANILIATPDS 191

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
                      + K   +   +           +S  + +  G   +   + L P F   
Sbjct: 192 ASSDAIQAAAAKAKAIYDQLKKGADFTRLAATSSSSENALEGGDMGWRKAAQLPPPFGDM 251

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-----EIALKAYLSAQNTPTKIEKHEAE 303
           L      + T P  T  G   + + +KR   G     +     ++  + +  + E     
Sbjct: 252 LSSMPVGDVTPPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEAETKR 311

Query: 304 YVKKLRSNAI 313
             +K+     
Sbjct: 312 LAQKIYDRIQ 321



 Score = 97.4 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 17/149 (11%), Positives = 55/149 (36%), Gaps = 3/149 (2%)

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDV 229
           +        +      I  ++++N+   ++  +   +            + F+      +
Sbjct: 282 QGQAQMRDEVHVRHILIKPSEIRNEAETKRLAQKIYDRIQNGEDFAELAKSFSEDPGSAL 341

Query: 230 SIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAY 287
           + G   ++  + L P+F+ ++ +  Q   + P+ TQ G   + +  +R     + A +  
Sbjct: 342 NGGDLNWVDPNSLVPEFRQVMSETPQGELSKPFQTQYGWHVLEVLGRRSTDATDQAREQQ 401

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                   K ++    +++++R  A +  
Sbjct: 402 ALNVLRNRKYDEELQTWLRQIRDEAYVEI 430


>gi|71899114|ref|ZP_00681278.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           Ann-1]
 gi|71731108|gb|EAO33175.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           Ann-1]
          Length = 463

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/324 (12%), Positives = 111/324 (34%), Gaps = 23/324 (7%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMS--SRIRTTINGEVITDGDISKRIALLKLQ 66
           ++ +  ++ +  + +    +P+ S +        RI   ++  V+   ++ + I  +K Q
Sbjct: 1   MTRYFSIVLSLLLAVSCVFLPVASARQQQHQPLDRIVAVVDDNVVLKSELDRAIHNVKSQ 60

Query: 67  K--------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
                     +  L++  ++ LI+  L+    + +GI    + +N      A N   S +
Sbjct: 61  YVGHEGQLPPDEVLQRQVLERLILIKLQVARAQTNGIRVSDDELNQAISSIAENNKTSVD 120

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
                L  +GI    F+Q +  +     + +     +    E E+       +  +  +Y
Sbjct: 121 GLRQKLVAEGISFPEFRQSVRDEITVHHLRQGFAQSRIVVSEGEVDTAL--AQANSGAQY 178

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK--FASKIHDVSIGKAQY 236
            ++ +L S+PD     Q  + ++  +  +S +   +         ++   + +  G   +
Sbjct: 179 HLQHILVSLPDGATSEQIAIAQKKINGIKSVIDKGELAFSAAAVRYSDSPNALESGDLGW 238

Query: 237 LLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLG--------GEIALKAY 287
               ++   F  +           P     G + + + +  D                 +
Sbjct: 239 RSLDEIPEAFAQMVQTMKPGQIVGPLRGTSGFQLLKLVEVHDSTAAAGPRQMATEYHARH 298

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSN 311
           +  + T  + E      +  LR+ 
Sbjct: 299 ILVRITEKQKEAQAKAKIDTLRAR 322



 Score = 85.1 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 43/138 (31%), Gaps = 3/138 (2%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS-IGKAQYLL 238
                  +   + Q +   + +I                  + +   ++ +  G   +  
Sbjct: 294 YHARHILVRITEKQKEAQAKAKIDTLRARIAGGADFQTVARESSEDANNSNQGGDLGWFP 353

Query: 239 ESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGE-IALKAYLSAQNTPTK 296
                  F N +K  +  N + P+ +  G   +     R         +A +       K
Sbjct: 354 SDAFGADFGNHVKALADGNVSEPFRSAAGWHIVQRLGTRQTDVTRENQRAQIRDTIGQRK 413

Query: 297 IEKHEAEYVKKLRSNAII 314
           +E+    ++++LRS A +
Sbjct: 414 LEESYERFLRELRSEAYV 431


>gi|77461354|ref|YP_350861.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           fluorescens Pf0-1]
 gi|121956432|sp|Q3K5T4|SURA_PSEPF RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|77385357|gb|ABA76870.1| putative chaperone [Pseudomonas fluorescens Pf0-1]
          Length = 426

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 104/306 (33%), Gaps = 17/306 (5%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL--------QKINGELEKIA 76
              +   +  +     R+   ++ +V+    + +R+  ++             G L++  
Sbjct: 4   ALFLGTAANAAVQSIDRVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGLPPPGVLDQQV 63

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           ++ LIVE L+ Q  E+SGI      +N      A+   ++ E F   L + G+     ++
Sbjct: 64  LERLIVENLQLQIGERSGIRITDEELNQAVGTIAQRNNMTPEQFRIALSRDGLSYEDARE 123

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
            +  + +   V +     +    E E+                +      IP  +  N  
Sbjct: 124 QIRREMVISRVRQRRVAERIQVSEQEVKNFLASDLGKMQLSEELHLANILIPTPESANSE 183

Query: 197 FV---QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKK 252
            +    ++  +  +   +           ++  + +  G   +   + L P F + L   
Sbjct: 184 AIQSAARKAMEVYQQLKQGADFGQMAVANSASDNALEGGDMGWRKAAQLPPPFDRELSSM 243

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGG---EIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
           +  + T P  T  G   + + +KR       +     ++  + +P + E    E  + L 
Sbjct: 244 ATGDITQPARTPGGFIILKLLEKRGGESQMRDEVHVRHILVKPSPVRDEAKTKELAQSLY 303

Query: 310 SNAIIH 315
           +   I 
Sbjct: 304 NR--IE 307



 Score = 92.0 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 15/147 (10%), Positives = 52/147 (35%), Gaps = 3/147 (2%)

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSI 231
            +     +      +  + ++++   ++  +                +K++      ++ 
Sbjct: 270 ESQMRDEVHVRHILVKPSPVRDEAKTKELAQSLYNRIEAGEDFAELAKKYSEDPGSALNG 329

Query: 232 GKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-YLS 289
           G   ++  + L P+F+ ++ K  Q   + P+ TQ G   + +  +R        +     
Sbjct: 330 GDLNWIDPNALVPEFRAVMAKSPQGQLSKPFQTQYGWHVLEVLGRRATDSTEQAREQQAM 389

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                 K ++    +++++R  A +  
Sbjct: 390 TVLRNRKYDEELQTWLRQIRDEAYVEI 416


>gi|15837440|ref|NP_298128.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa 9a5c]
 gi|81788857|sp|Q9PF40|SURA_XYLFA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|9105742|gb|AAF83648.1|AE003923_6 peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa 9a5c]
          Length = 464

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/325 (12%), Positives = 112/325 (34%), Gaps = 24/325 (7%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMS--SRIRTTINGEVITDGDISKRIALLKLQ 66
           ++ +  ++ +  + +    +P+ S +        RI   ++  V+   ++ + I  +K Q
Sbjct: 1   MTRYFSIVLSLLLAVSCVFLPVASARQQQHQPLDRIVAVVDDNVVLKSELDRAIHNVKSQ 60

Query: 67  K--------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
                     +  L++  ++ LI+  L+    + +GI    + +N      A N   S +
Sbjct: 61  YVGHEGQLPPDEVLQRQVLERLILIKLQVARAQTNGIRVSDDELNQAISSIAENNKTSVD 120

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
                L  +GI    F+Q +  +     + +     +    E E+       +  +  +Y
Sbjct: 121 GLRQKLVAEGISFPEFRQSVRDEITVHHLRQGFAQSRIVVSEGEVDTAL--AQASSGAQY 178

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK--FASKIHDVSIGKAQY 236
            ++ +L ++PD     Q  + ++  D  +S +   +         ++   + +  G   +
Sbjct: 179 HLQHILVAVPDGATSQQIAIAQKKIDGIKSVIDKGELAFSAAAVRYSDSPNALESGDLGW 238

Query: 237 LLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRD---------LGGEIALKA 286
               ++   F  +           P     G + + + + RD                  
Sbjct: 239 RSLDEIPEAFAQMVQTMKPGQIVGPLRGTSGFQLLKLVEVRDSAAAAAGPRQMATEYHAR 298

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSN 311
           ++  + T  + E      +  LR+ 
Sbjct: 299 HILVRITEKQKEAEAKAKIDTLRAR 323



 Score = 84.7 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/156 (11%), Positives = 46/156 (29%), Gaps = 3/156 (1%)

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           E+  +                    +   + Q +   + +I                  +
Sbjct: 277 EVRDSAAAAAGPRQMATEYHARHILVRITEKQKEAEAKAKIDTLRARIAGGADFQTVARE 336

Query: 222 FASKIHDVS-IGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG 279
            +   ++ +  G   +         F N +K  +  N + P+ +  G   +     R   
Sbjct: 337 SSEDANNSNQGGDLGWFPSDAFGADFGNHVKALADGNVSEPFRSAAGWHIVQRLGTRQTD 396

Query: 280 GE-IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                 +A +       K+E+    ++++LRS A +
Sbjct: 397 VTRENQRAQIRDTIGQRKLEESYERFLRELRSEAYV 432


>gi|298370562|ref|ZP_06981877.1| SurA/PPIASE domain protein [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298281172|gb|EFI22662.1| SurA/PPIASE domain protein [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 304

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 35/315 (11%), Positives = 100/315 (31%), Gaps = 29/315 (9%)

Query: 15  LLTTYFVLIIFCIVPIVSYKS-WAMSSRIRTTINGEVITDGDISKRIALLKL------QK 67
           +     +L     + +  + +    S  I   ++ +VIT  ++++ +A  +       Q 
Sbjct: 1   MNFKPLILAAALGLTLNVHAADVKFSDGIAAVVDNDVITQREVAQAVAAARSRLPKGSQI 60

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
            N EL +  + +L+ ++L  Q  ++  I      ++    Q+      + +         
Sbjct: 61  SNDELRQQVLSQLVNQSLIIQAGKRKKIQASEAEIDAVLAQNPTQAKKANKAVR------ 114

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT------VREYLIR 181
                   + +A   +   V +   M      + E+     + +               +
Sbjct: 115 --------RQIADSIVVEKVRQQAIMQNSRVSDAEVDRFLAQAQRQGITLPAGEPLRQYK 166

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
                +  +        +  I+                 +++      + G   +  +  
Sbjct: 167 AQHILLKADSDNAVSAAESSIRKIYAQARSGTDFSALARQYSQDTSAGNGGDLGWFSDGQ 226

Query: 242 LHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEK 299
           +   F++ + K      + P  TQ G   I + + RD    E   +  +    +  K ++
Sbjct: 227 MVAPFEDAVHKLKPGQVSPPVRTQFGWHIIKLNEVRDAGTPEERQRNAVRQYISNQKAQQ 286

Query: 300 HEAEYVKKLRSNAII 314
                +++L S++ +
Sbjct: 287 ATTNLLQELHSSSYV 301


>gi|325576844|ref|ZP_08147459.1| peptidyl-prolyl cis-trans isomerase [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325161050|gb|EGC73168.1| peptidyl-prolyl cis-trans isomerase [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 310

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 56/315 (17%), Positives = 121/315 (38%), Gaps = 19/315 (6%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +  +    ++F ++ + ++       R+  T+NG  I    ++  +            ++
Sbjct: 1   MKKSMLKSLLFAMIGLFTFSQAQAEERVVATVNGTPILQSQVNAVM-------GKKGSQR 53

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
            A+ ++I + L ++ I++SG+  +   VN      A   GL+   F   LD QGI  N F
Sbjct: 54  AALDKIIDDMLTEKAIKESGVKVNQAEVNRIVEDIAAKNGLTYGQFLDALDYQGISLNAF 113

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI----------TVREYLIRTVL 184
           KQ ++ Q +   V  +           ++ A  ++M +             +EY +R +L
Sbjct: 114 KQQISRQMLMAGVRNHAIQNSVDVTREQVEALGKQMLDEAKAKGTAQKVMGKEYEVRHIL 173

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY-LLESDLH 243
             +       Q   +     +E    ++      L+     +   + G   Y   E+ + 
Sbjct: 174 LKLNPLLDDAQAKAELERIRSEIILGKMTFADAALKYSKDYLSGANGGSLGYAFPEAYVG 233

Query: 244 PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKHEA 302
           P  + +    Q   + P+ ++ G   + +   RD              Q   +++++   
Sbjct: 234 PFAKMVETTPQGTVSAPFKSEFGWHILEVTGSRDGDKTEDAYRQKAYEQIVNSQLQEATK 293

Query: 303 EYVKKLRSNAIIHYY 317
           ++VK LR NA I Y+
Sbjct: 294 DWVKALRKNADIQYF 308


>gi|254522723|ref|ZP_05134778.1| chaperone SurA [Stenotrophomonas sp. SKA14]
 gi|219720314|gb|EED38839.1| chaperone SurA [Stenotrophomonas sp. SKA14]
          Length = 447

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/321 (11%), Positives = 101/321 (31%), Gaps = 22/321 (6%)

Query: 13  IKLLTTYFVLIIFCIVPIVS-----YKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK 67
           +       +  +  +  + +      +      RI   ++ +VI   ++ + IA +K Q 
Sbjct: 1   MTKRFPVLLASLLAVSSVSAPLQVLAQEAQPLDRIAAVVDEDVILQSELQRAIANIKAQY 60

Query: 68  --------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                       L +  ++ L++  L+    + SGI      +N      A+  G + + 
Sbjct: 61  AGRENQLPPEDVLSRQVLERLVLVKLQVARAQSSGIRVGDQELNQAMNAIAQQNGSTLDA 120

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
               L   GI  N F+  +  +     + ++    +    E E+ A  ++   +  + +L
Sbjct: 121 LRQRLAHDGIDFNDFRASVRDEITVQRLRQSFAQSRISVSEGEVDAALKQQATVGNQYHL 180

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKIHDVSIGKAQYLL 238
              ++              QK+    +    +          +++   + +  G   +  
Sbjct: 181 AHILVALPDGANADQIATGQKKADGVKALLDKGELDFNAAAVRYSDSPNALEGGDLGWRS 240

Query: 239 ESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDL-------GGEIALKAYLSA 290
             ++   F  ++ K        P     G + + + D RD                ++  
Sbjct: 241 LDEIPQAFAQMMEKMKPGEVVGPIRGPSGFQLLKLVDVRDASATAGANTVTEYHGRHILV 300

Query: 291 QNTPTKIEKHEAEYVKKLRSN 311
           +    + +      +  LR+ 
Sbjct: 301 RVDDHQTDAAAKAKIDTLRAR 321



 Score = 84.7 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 44/156 (28%), Gaps = 5/156 (3%)

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           ++          TV EY  R +L     +  Q     + +I                 ++
Sbjct: 277 DVRDASATAGANTVTEYHGRHILV--RVDDHQTDAAAKAKIDTLRARIAGGADFETVAKE 334

Query: 222 FASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
            +         G   +       P F Q +        + P+ T  G   +     R   
Sbjct: 335 SSEDNNSKGQGGDLGWFPADAFGPAFGQQVSGLQDGGVSQPFRTDAGWHIVQRVATRQTD 394

Query: 280 GEIAL-KAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                 +A +       K+E     ++++LR  A +
Sbjct: 395 VTNDNQRAQVRETIGRRKLEDEYNRFLQELRGEAYV 430


>gi|122070657|sp|Q48NT5|SURA_PSE14 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
          Length = 428

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 96/306 (31%), Gaps = 17/306 (5%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GELEKIA 76
             ++    + +      +   ++ +VI    + +R+  ++               L+   
Sbjct: 4   ALLLSGAVHAAVQPLESVVAIVDNDVIMKSQMDQRVREVQQTIAKRGSGVPPAEALQPQV 63

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           +  LI+E L+ Q  E+SGI    N +N      A+   +S E F + L   G+  N  ++
Sbjct: 64  LDRLILENLQLQMGERSGIRVSDNELNQAIGTIAQRNNMSVEQFRAALAHDGLSYNDARE 123

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
            +  + I   V +     +    + E+       +               I      +  
Sbjct: 124 QVRREMIISRVRQRRVAERIQVSQQEVKNFLASDQGKAQLSEEFHLANILIATPDSASSD 183

Query: 197 FVQKRIKD---AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKK 252
            +Q          +   +           +S  + +  G   +   + L P F   L   
Sbjct: 184 AIQAAAVKAKGIYDQLKKGADFTRLAATTSSSENALEGGDMGWRKAAQLPPPFGDMLSAM 243

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGG-----EIALKAYLSAQNTPTKIEKHEAEYVKK 307
              + T P  T  G   + + +KR   G     +     ++  + +  + E+      +K
Sbjct: 244 PVGDVTPPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKRLAEK 303

Query: 308 LRSNAI 313
           +     
Sbjct: 304 IYDRIQ 309



 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 16/149 (10%), Positives = 53/149 (35%), Gaps = 3/149 (2%)

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDV 229
           +        +      I  ++++N+   ++  +   +            + F+      +
Sbjct: 270 QGQAQMRDEVHVRHILIKPSEIRNEEETKRLAEKIYDRIQNGEDFAELAKSFSEDPGSAL 329

Query: 230 SIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAY 287
           + G   ++  + L P+F+  + +  Q   + P+ T  G   + +  +R     + A +  
Sbjct: 330 NGGDLNWVDPNSLVPEFRQVMNETPQGELSKPFKTAYGWHVLEVLGRRSTDATDQAREQQ 389

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                   K ++    +++++R  A +  
Sbjct: 390 ALNVLRNRKYDEELQTWLRQIRDEAYVEI 418


>gi|152984838|ref|YP_001346133.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
           PA7]
 gi|150959996|gb|ABR82021.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
           PA7]
          Length = 430

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/308 (13%), Positives = 109/308 (35%), Gaps = 15/308 (4%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL--------QKINGEL 72
           + +   ++   ++       R+   ++ +VI    + +R+  +                L
Sbjct: 12  LALGAALLCSFAHAEVVPLDRVVAIVDNDVIMQSQLDQRLREVHQTLLKRGAPLPPEHVL 71

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            +  ++ LI+E +++Q  ++SGI      +N      A+  G+S E F + L + G+   
Sbjct: 72  TQQVLERLIIENIQQQIGDRSGIRISDEELNQAMATIAQRNGMSLEQFQAALTRDGLSYA 131

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             +  +  + +   V +     +    E E+                 R     IP  + 
Sbjct: 132 DARDQVRREMVISRVRQRRVAERIQVSEQEVKNFLASDMGKIQLSEEYRLANILIPVPEA 191

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
            +   +Q   + A+E   +L +  +        ++  + +  G+  +   + L   F ++
Sbjct: 192 ASSDVIQAAARQAQELYQQLKQGADFGQLAISRSAGDNALEGGEIGWRKAAQLPQPFDSM 251

Query: 250 LKK-SQNNTTNPYVTQKGVEYIAICDKRDLGG---EIALKAYLSAQNTPTKIEKHEAEYV 305
           +   +  + T P  T  G   + + +KR       +     ++  + +  + +    +  
Sbjct: 252 IGSLAVGDVTEPVRTPGGFIILKLEEKRGGSKMVRDEVHVRHILLKPSEIRSDAETEKLA 311

Query: 306 KKLRSNAI 313
           +KL     
Sbjct: 312 QKLYERIQ 319



 Score = 93.2 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 15/139 (10%), Positives = 48/139 (34%), Gaps = 3/139 (2%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
                 +  +++++    +K  +   E            + F+      ++ G   ++  
Sbjct: 290 HVRHILLKPSEIRSDAETEKLAQKLYERIQSGEDFGELAKSFSEDPGSALNGGDLNWIDP 349

Query: 240 SDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-YLSAQNTPTKI 297
             L P+F+  +    Q   + P+ +Q G   + +  +R        +     +     K 
Sbjct: 350 EALVPEFRQVMNDTPQGELSKPFRSQFGWHILQVLGRRATDSSEKFREQQAVSVLRNRKY 409

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           ++    +++++R  A +  
Sbjct: 410 DEELQAWLRQIRDEAYVEI 428


>gi|301061946|ref|ZP_07202675.1| SurA N-terminal domain protein [delta proteobacterium NaphS2]
 gi|300443963|gb|EFK07999.1| SurA N-terminal domain protein [delta proteobacterium NaphS2]
          Length = 316

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/311 (15%), Positives = 104/311 (33%), Gaps = 17/311 (5%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING----------EL 72
               I+   +      +S     +NG+VIT  ++ + +   K Q +             L
Sbjct: 2   FSLAILSWPASAEEKPASEKVAVVNGDVITRANLDRAMDFAKRQSMQQGKPLDEEQLAAL 61

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +K  + +LI   L  Q  +K+G   D   V+  F Q  +    + E     +++  + + 
Sbjct: 62  KKETLDKLIGIELLYQASKKAGNKVDEKQVDEKFAQFKKRF-PNEEALQKTMEEWHVTEA 120

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             K  L    +    V  +F+ K    E E+ A          +   ++     I     
Sbjct: 121 DMKAELKKGMVTEAFVMKNFVDKTTIPEEEVKAYYDSHPQFFKQPEQVKASHILIKVKPD 180

Query: 193 QNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
             +    + +K  E+++ +           +  +        G   Y     +   F+++
Sbjct: 181 ATEAEKAEAMKKIEKAQDKLLEGEDFAEVAKTTSEGPSASKGGDLGYFGRGQMVKPFEDV 240

Query: 250 LKK-SQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVK 306
                    ++   TQ G   I + DK+         +K  +       +++K   +Y+ 
Sbjct: 241 AFSLEPGKVSDVVKTQFGYHLIKVVDKKPETTIPLETVKPRIEQFLKQQEVQKEIKKYID 300

Query: 307 KLRSNAIIHYY 317
            LR  A +  +
Sbjct: 301 NLRKGAKVEIF 311


>gi|39995126|ref|NP_951077.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Geobacter sulfurreducens PCA]
 gi|39981888|gb|AAR33350.1| PPIC-type PPIASE domain protein [Geobacter sulfurreducens PCA]
 gi|298504156|gb|ADI82879.1| peptidylprolyl cis-trans isomerase, PpiC-type, SurA family
           [Geobacter sulfurreducens KN400]
          Length = 321

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/318 (16%), Positives = 105/318 (33%), Gaps = 17/318 (5%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING---- 70
           ++     L +  ++ + S  S  + SRI   +N E++T   + K    L  +        
Sbjct: 1   MIKRLIPLSLAVVLTLPSLSSAEVVSRILAVVNDEIVTSYAVDKEKRALLKEAERQQPPP 60

Query: 71  ------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L+++A+  LI + L +Q+I +  I      V        R   LS E   + L
Sbjct: 61  DPKSLANLDEVALNRLIDKKLVEQKIRELDIRVGEEEVRQAIEDVKRQNKLSQEALVAAL 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
             QG+  + +K  +  Q     +V  +   K    E E+    +  K     E + R   
Sbjct: 121 ANQGLSFDQYKAQIKEQLERLRLVSQEVRSKIQVGEREMREYYEANKAKFGAEDIFRARN 180

Query: 185 FSIPDNKLQNQGFVQKRI---KDAEESRLRLPKDCNKLEKFASKIHDV-SIGKAQYLLES 240
                +   +   V+K +                     +++       + G      + 
Sbjct: 181 IYFKLDDKMSAEQVKKVMTTAMTVLHEAQSGKDFAELARQYSDDPAAKGNGGDLGTFRKG 240

Query: 241 D-LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKI 297
           D L    + L +      ++   T  G+  + + ++          +KA +       K 
Sbjct: 241 DILPEFEEQLTRMQPGEVSDLIYTATGLHIVKLEERSLGTPKPFEQVKAEVEDLVYRKKS 300

Query: 298 EKHEAEYVKKLRSNAIIH 315
           E    ++V  LR  A I 
Sbjct: 301 EDRFNQWVADLRKGAAIE 318


>gi|15595791|ref|NP_249285.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
           PAO1]
 gi|9946466|gb|AAG03983.1|AE004495_7 peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
           PAO1]
          Length = 430

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/308 (13%), Positives = 110/308 (35%), Gaps = 15/308 (4%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL--------QKINGEL 72
           + +   ++   ++       R+   ++ +VI    + +R+  +                L
Sbjct: 12  LALGAALLCSFAHAEVVPLDRVVAIVDNDVIMQSQLDQRLREVHQTLLKRGAPLPPEHVL 71

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            +  ++ LI+E +++Q  ++SGI      +N      A+  G+S E F + L + G+   
Sbjct: 72  TQQVLERLIIENIQQQIGDRSGIRISDEELNQAMGTIAQRNGMSLEQFQTALTRDGLSYA 131

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             ++ +  + +   V +     +    E E+                 R     IP  + 
Sbjct: 132 DAREQVRREMVISRVRQRRVAERIQVSEQEVKNFLASDMGKIQLSEEYRLANILIPVPEA 191

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
            +   +Q   + A+E   +L +  +        ++  + +  G+  +   + L   F ++
Sbjct: 192 ASSDVIQAAARQAQELYQQLKQGADFGQLAISRSAGDNALEGGEIGWRKAAQLPQPFDSM 251

Query: 250 LKK-SQNNTTNPYVTQKGVEYIAICDKRDLGG---EIALKAYLSAQNTPTKIEKHEAEYV 305
           +   +  + T P  T  G   + + +KR       +     ++  + +  + E    +  
Sbjct: 252 IGSLAVGDVTEPVRTPGGFIILKLEEKRGGSKMVRDEVHVRHILLKPSEIRSEAETEKLA 311

Query: 306 KKLRSNAI 313
           +KL     
Sbjct: 312 QKLYERIQ 319



 Score = 92.8 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 15/139 (10%), Positives = 49/139 (35%), Gaps = 3/139 (2%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
                 +  ++++++   +K  +   E            + F+      ++ G   ++  
Sbjct: 290 HVRHILLKPSEIRSEAETEKLAQKLYERIQSGEDFGELAKSFSEDPGSALNGGDLNWIDP 349

Query: 240 SDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-YLSAQNTPTKI 297
             L P+F+  +    Q   + P+ +Q G   + +  +R        +     +     K 
Sbjct: 350 EALVPEFRQVMNDTPQGELSKPFRSQFGWHILQVLGRRATDSSEKFREQQAVSVLRNRKY 409

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           ++    +++++R  A +  
Sbjct: 410 DEELQAWLRQIRDEAYVEI 428


>gi|75675872|ref|YP_318293.1| hypothetical protein Nwi_1680 [Nitrobacter winogradskyi Nb-255]
 gi|74420742|gb|ABA04941.1| conserved unknown protein [Nitrobacter winogradskyi Nb-255]
          Length = 314

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 125/299 (41%), Gaps = 4/299 (1%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           +L +F  +  VS  S   +  I   +NGE IT  DI +R  L+K+        +  + EL
Sbjct: 12  LLAVFAFLTFVSMNSPLHAQSIAVMVNGEPITTLDIEQRSRLIKISTHKSPSRQEVIDEL 71

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I E +K +E +K G+   S  ++  +       G+S E  +  L  QGI  +  K  L  
Sbjct: 72  IDEKVKVKEAKKYGVNPTSTDIDRAYANMGARMGMSPEQLTKSLGSQGIRPDTIKSRLKA 131

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE--YLIRTVLFSIPDNKLQNQGFV 198
             +W  +V+  F       + ++    +       +      +     +   +      V
Sbjct: 132 DLVWGSLVRGRFKESLLVSDRDVNEALKNSGEDQSKIEGVEYQMRPVVLIVPRGATASMV 191

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNT 257
           + R  +A   R R+      +      + + ++ +      +DL P  ++ L K +  + 
Sbjct: 192 EARRNEANALRERVQSCAEIIRTV-KVMRNATLRETITKTSTDLPPPLRDLLDKTAVGHL 250

Query: 258 TNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           T P +T++GVE +A+C K+    +   K  +  +    K EK    Y++++R +A+I Y
Sbjct: 251 TPPEMTRQGVEMVAVCGKKVTSVDTPKKKEIREKMFADKYEKRSKSYLERIRKSAMIEY 309


>gi|254243688|ref|ZP_04937010.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
           2192]
 gi|126197066|gb|EAZ61129.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
           2192]
          Length = 430

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/308 (13%), Positives = 111/308 (36%), Gaps = 15/308 (4%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL--------QKINGEL 72
           + +   ++   ++       R+   ++ +VI    + +R+  +                L
Sbjct: 12  LALGAALLCSFAHAEVVPLDRVVAIVDNDVIMQSQLDQRLREVHQTLLKRGAPLPPEHVL 71

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            +  ++ LI+E +++Q  ++SGI      +N      A+  G+S E F + L + G+  +
Sbjct: 72  TQQVLERLIIENIQQQIGDRSGIRISDEELNQAMGTIAQRNGMSLEQFQAALTRDGLSYS 131

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             ++ +  + +   V +     +    E E+                 R     IP  + 
Sbjct: 132 DAREQVRREMVISRVRQRRVAERIQVSEQEVKNFLASDMGKIQLSEEYRLANILIPVPEA 191

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
            +   +Q   + A+E   +L +  +        ++  + +  G+  +   + L   F ++
Sbjct: 192 ASSDVIQAAARQAQELYQQLKQGADFGQLAISRSAGDNALEGGEIGWRKAAQLPQPFDSM 251

Query: 250 LKK-SQNNTTNPYVTQKGVEYIAICDKRDLGG---EIALKAYLSAQNTPTKIEKHEAEYV 305
           +   +  + T P  T  G   + + +KR       +     ++  + +  + E    +  
Sbjct: 252 IGSLAVGDVTEPVRTPGGFIILKLEEKRGGSKMVRDEVHVRHILLKPSEIRSEAETEKLA 311

Query: 306 KKLRSNAI 313
           +KL     
Sbjct: 312 QKLYERIQ 319



 Score = 92.4 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 15/139 (10%), Positives = 49/139 (35%), Gaps = 3/139 (2%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
                 +  ++++++   +K  +   E            + F+      ++ G   ++  
Sbjct: 290 HVRHILLKPSEIRSEAETEKLAQKLYERIQSGEDFGELAKSFSEDPGSALNGGDLNWIDP 349

Query: 240 SDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-YLSAQNTPTKI 297
             L P+F+  +    Q   + P+ +Q G   + +  +R        +     +     K 
Sbjct: 350 EALVPEFRQVMNDTPQGELSKPFRSQFGWHILQVLGRRATDSSEKFREQQAVSVLRNRKY 409

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           ++    +++++R  A +  
Sbjct: 410 DEELQAWLRQIRDEAYVEI 428


>gi|301155190|emb|CBW14654.1| unnamed protein product [Haemophilus parainfluenzae T3T1]
          Length = 310

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 56/315 (17%), Positives = 121/315 (38%), Gaps = 19/315 (6%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +  +    ++F ++ + ++       R+  T+NG  I    ++  +            ++
Sbjct: 1   MKKSMLKSLLFAMIGLFTFSQVQAEERVVATVNGTPILQSQVNAVM-------GKKGSQR 53

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
            A+ ++I + L ++ I++SG+  +   VN      A   GL+   F   LD QGI  N F
Sbjct: 54  AALDKIIDDMLTEKAIKESGVKVNQAEVNRIVEDIAAKNGLTYGQFLDALDYQGISLNAF 113

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI----------TVREYLIRTVL 184
           KQ ++ Q +   V  +           ++ A  ++M +             +EY +R +L
Sbjct: 114 KQQISRQMLMAGVRNHAIQNSVDVTREQVDALGKQMLDEAKAKGTAQKVMGKEYEVRHIL 173

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY-LLESDLH 243
             +       Q   +     +E    ++      L+     +   + G   Y   E+ + 
Sbjct: 174 LKLNPLLNDAQAKAELERIRSEIISGKMTFADAALKYSKDYLSGANGGSLGYAFPEAYVG 233

Query: 244 PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKHEA 302
           P  + +    Q   + P+ ++ G   + +   RD              Q   +++++   
Sbjct: 234 PFAKMVETTPQGTISAPFKSEFGWHILEVTGTRDGDKTEDAYRQKAYEQIVNSQLQEATK 293

Query: 303 EYVKKLRSNAIIHYY 317
           ++VK LR NA I Y+
Sbjct: 294 DWVKALRKNADIQYF 308


>gi|116054322|ref|YP_788767.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218889335|ref|YP_002438199.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
           LESB58]
 gi|254237192|ref|ZP_04930515.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
           C3719]
 gi|296387100|ref|ZP_06876599.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
           PAb1]
 gi|115589543|gb|ABJ15558.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126169123|gb|EAZ54634.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
           C3719]
 gi|218769558|emb|CAW25318.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
           LESB58]
          Length = 430

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/308 (13%), Positives = 110/308 (35%), Gaps = 15/308 (4%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL--------QKINGEL 72
           + +   ++   ++       R+   ++ +VI    + +R+  +                L
Sbjct: 12  LALGAALLCSFAHAEVVPLDRVVAIVDNDVIMQSQLDQRLREVHQTLLKRGAPLPPEHVL 71

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            +  ++ LI+E +++Q  ++SGI      +N      A+  G+S E F + L + G+   
Sbjct: 72  TQQVLERLIIENIQQQIGDRSGIRISDEELNQAMGTIAQRNGMSLEQFQAALTRDGLSYA 131

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             ++ +  + +   V +     +    E E+                 R     IP  + 
Sbjct: 132 DAREQVRREMVISRVRQRRVAERIQVSEQEVKNFLASDMGKIQLSEEYRLANILIPVPEA 191

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
            +   +Q   + A+E   +L +  +        ++  + +  G+  +   + L   F ++
Sbjct: 192 ASSDVIQAAARQAQELYQQLKQGADFGQLAISRSAGDNALEGGEIGWRKAAQLPQPFDSM 251

Query: 250 LKK-SQNNTTNPYVTQKGVEYIAICDKRDLGG---EIALKAYLSAQNTPTKIEKHEAEYV 305
           +   +  + T P  T  G   + + +KR       +     ++  + +  + E    +  
Sbjct: 252 IGSLAVGDVTEPVRTPGGFIILKLEEKRGGSKMVRDEVHVRHILLKPSEIRSEAETEKLA 311

Query: 306 KKLRSNAI 313
           +KL     
Sbjct: 312 QKLYERIQ 319



 Score = 92.4 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 15/139 (10%), Positives = 49/139 (35%), Gaps = 3/139 (2%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
                 +  ++++++   +K  +   E            + F+      ++ G   ++  
Sbjct: 290 HVRHILLKPSEIRSEAETEKLAQKLYERIQSGEDFGELAKSFSEDPGSALNGGDLNWIDP 349

Query: 240 SDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-YLSAQNTPTKI 297
             L P+F+  +    Q   + P+ +Q G   + +  +R        +     +     K 
Sbjct: 350 EALVPEFRQVMNDTPQGELSKPFRSQFGWHILQVLGRRATDSSEKFREQQAVSVLRNRKY 409

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           ++    +++++R  A +  
Sbjct: 410 DEELQAWLRQIRDEAYVEI 428


>gi|89094171|ref|ZP_01167114.1| peptidyl-prolyl cis-trans isomerase SurA [Oceanospirillum sp.
           MED92]
 gi|89081646|gb|EAR60875.1| peptidyl-prolyl cis-trans isomerase SurA [Oceanospirillum sp.
           MED92]
          Length = 430

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/314 (16%), Positives = 115/314 (36%), Gaps = 16/314 (5%)

Query: 14  KLLTTYFVLIIFCIVPIV-SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           KL        +  ++P+  S+ +     RI   +N  +I   ++ +R ++ + Q  +   
Sbjct: 4   KLHKLISAAALSLLLPVSHSHAAEIPLDRIAAVVNEGIILQSELEQRTSITREQLQSRNT 63

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L K  +  LI+E+++KQ  E++G+    + +N      A   GLS + F   L
Sbjct: 64  RIPPEHILRKQVLNRLIIESIQKQMAEQNGVRVSDSQLNGAIANIAAQNGLSIDQFREAL 123

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
             +G   N  ++ +  + +   V +N    +    E E+          +          
Sbjct: 124 IAEGRDYNQAREQIRNEMLINSVQQNLVNRRIRVSEQELSNFLNSEDGKSQASAEFLLGH 183

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE---KFASKIHDVSIGKAQYLLESD 241
             I      +   +Q+    A+E   +L    +  E   +F++  + +  G   +   ++
Sbjct: 184 ILIATPSQASPEIIQQAESKAKEIFDKLNNGADFAETAVEFSNAPNALKGGDLGWRKANE 243

Query: 242 LHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG---EIALKAYLSAQNTPTKI 297
           L     + + K S    + P  +  G   +   DKR       +  L +++  + T  + 
Sbjct: 244 LPEALSKAVRKLSPGEFSKPVRSPSGFHILLAKDKRGGAVQLIDQRLVSHILLKPTEIRT 303

Query: 298 EKHEAEYVKKLRSN 311
            +     + +L   
Sbjct: 304 NEQAKRQISQLYQR 317



 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 50/138 (36%), Gaps = 3/138 (2%)

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLES 240
                +   +++     +++I    +            ++F+         G   +    
Sbjct: 291 VSHILLKPTEIRTNEQAKRQISQLYQRIASGEDFAALAKEFSDDPASGSEGGSLGWTQNG 350

Query: 241 DLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKR-DLGGEIALKAYLSAQNTPTKIE 298
            + P+F+ ++  +     + P+ ++ G   + + D R +  GE   +    A     K  
Sbjct: 351 QMVPEFEQVMNSTAVGQVSEPFESRFGWHILTVLDTRTEDMGETMQENRARATIRKRKFN 410

Query: 299 KHEAEYVKKLRSNAIIHY 316
           +  + +++++RS A +  
Sbjct: 411 EELSNWLREIRSQAYVDI 428


>gi|315186551|gb|EFU20310.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
           thermophila DSM 6578]
          Length = 336

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/289 (16%), Positives = 100/289 (34%), Gaps = 17/289 (5%)

Query: 45  TINGEVITDGDISKRIALLKLQKIN----------GELEKIAVQELIVETLKKQEIEKSG 94
            +NGE +   ++ + +     Q              +L +  +  LI   L  QE ++ G
Sbjct: 49  RVNGEEVPSKEVEREVQRYVAQYQQYGMEVSPEEEQKLREQVLDVLIGRLLLLQEAKRMG 108

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
           ++ D   V+    Q+   +G S E F + L + G  +  F++ L+   +   VV      
Sbjct: 109 LSVDQAQVDAQIEQYKLQSG-SEETFKNILAQAGYTEEEFREELSRAFLLQQVVDEKVTK 167

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI---KDAEESRLR 211
                + E  A   +      +   IR     I      ++   +       + +E   +
Sbjct: 168 HLSVSDEEARAYYDENPEQFEQPEQIRARHILIRLAPDASKEEEEAAYAKIHEVQEKLNQ 227

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                   + ++      + G   +  +  + P F+        N  ++   T+ G+  I
Sbjct: 228 GADFAELAKTYSEGPSAPNGGDLGFFGKGQMVPAFEEAAFALEVNQVSDVVRTEYGLHLI 287

Query: 271 AICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            + D+++ G      +K  L       K  +     V++L+  A I  Y
Sbjct: 288 QVTDRQEAGKASFEEVKDQLKEMLLQQKSSEAINALVEELKGKAEIEIY 336


>gi|148262225|ref|YP_001228931.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           uraniireducens Rf4]
 gi|146395725|gb|ABQ24358.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           uraniireducens Rf4]
          Length = 345

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/327 (15%), Positives = 108/327 (33%), Gaps = 18/327 (5%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
           ++ +S  +       V+I   ++P+ +     + S I   +N ++IT  ++ +  AL+  
Sbjct: 19  YSWISQTMSTFVKTIVIIAIALLPLTA--RAELVSGIAAIVNDDIITTYEVDRDAALIGK 76

Query: 66  QKIN---------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
           +              L K A+  LI + L +Q+I++  I      V        +   L+
Sbjct: 77  EMEKRAPAEAADKAALRKTALSRLIDKKLIEQKIKELDIRVPEEEVRQSIEDVKKQNKLT 136

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            E   + L  QG+  + +K  L  Q     ++  +   K    E E+       +     
Sbjct: 137 QEALVAALAAQGLSFDQYKAQLKEQLERLRLMSQEVRAKIQVGEREMREYYDANRAKYGE 196

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQ---KRIKDAEESRLRLPKDCNKLEKFASKIHD-VSIG 232
           E   R        +K   +  +        +  +            +K++         G
Sbjct: 197 EEFTRARQIYFKIDKKAAESEITRVTAAAANVLQEAKSGKDFAELAKKYSDDPAAAKDGG 256

Query: 233 KAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICD--KRDLGGEIALKAYLS 289
           +       D+ P+ +           ++   T  G+  I + +  K        +KA + 
Sbjct: 257 ELGTFKRGDMIPEIERALDTMKPGEISDLVRTPAGIHIIKLEERTKGKAKPFEEVKAEIE 316

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                 K E    ++V  LR  A I  
Sbjct: 317 DFLYKKKSEDRFNQWVNDLRKGAAIEI 343


>gi|190572865|ref|YP_001970710.1| putative survival protein SurA [Stenotrophomonas maltophilia K279a]
 gi|190010787|emb|CAQ44396.1| putative survival protein SurA precursor [Stenotrophomonas
           maltophilia K279a]
          Length = 447

 Score =  137 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/321 (11%), Positives = 101/321 (31%), Gaps = 22/321 (6%)

Query: 13  IKLLTTYFVLIIFCIVPIVS-----YKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK 67
           +       +  +  +  + +      +      RI   ++ +VI   ++ + IA +K Q 
Sbjct: 1   MTKRFPVLLASLLAVSSVSAPLQVLAQEAQPLDRIAAVVDEDVILQSELQRAIANIKAQY 60

Query: 68  --------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                       L +  ++ L++  L+    + SGI      +N      A+  G + + 
Sbjct: 61  AGRENQLPPEDVLSRQVLERLVLVKLQVARAQGSGIRVSDQELNQAMNSIAQQNGSNLDA 120

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
               L   GI  N F+  +  +     + ++    +    E E+ A  ++   +  + +L
Sbjct: 121 LRQRLAHDGIDFNDFRASVRDEITVQRLRQSFAQSRISVSEGEVDAALKQQATVGNQYHL 180

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKIHDVSIGKAQYLL 238
              ++              QK+    +    +          +++   + +  G   +  
Sbjct: 181 AHILVALPDGANADQIATGQKKADGVKALLDKGELDFNAAAVRYSDSPNALEGGDLGWRS 240

Query: 239 ESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDL-------GGEIALKAYLSA 290
             ++   F  ++ K        P     G + + + + RD                ++  
Sbjct: 241 LDEIPQAFAQMMEKMKPGEVVGPIRGPSGFQLLKLVEVRDASATAGASTVTEYHGRHILV 300

Query: 291 QNTPTKIEKHEAEYVKKLRSN 311
           +    + +      +  LR+ 
Sbjct: 301 RVDDHQTDAAAKAKIDTLRAR 321



 Score = 84.7 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 44/156 (28%), Gaps = 5/156 (3%)

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           E+          TV EY  R +L     +  Q     + +I                 ++
Sbjct: 277 EVRDASATAGASTVTEYHGRHILV--RVDDHQTDAAAKAKIDTLRARIAGGADFETVAKE 334

Query: 222 FASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
            +         G   +       P F Q +        + P+ T  G   +     R   
Sbjct: 335 SSEDNNSKGQGGDLGWFPADAFGPAFGQQVAAIQDGGVSQPFRTDAGWHILQRVATRQTD 394

Query: 280 GEIAL-KAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                 +A +       K+E     ++++LR  A +
Sbjct: 395 VTNDNQRAQVRETIGRRKLEDEYNRFLQELRGEAYV 430


>gi|300114054|ref|YP_003760629.1| peptidylprolyl isomerase [Nitrosococcus watsonii C-113]
 gi|299539991|gb|ADJ28308.1| Peptidylprolyl isomerase [Nitrosococcus watsonii C-113]
          Length = 426

 Score =  137 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/312 (12%), Positives = 106/312 (33%), Gaps = 17/312 (5%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING----- 70
           +    V I+     + S+ + +   RI   +N +++ + ++ + +  ++ Q         
Sbjct: 1   MGKVLVAIVVLFWTMGSFATMS-LDRIVAVVNEDIVLESELEQMVRTVQDQLAAQGTSLP 59

Query: 71  ---ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
               LE+  ++ L++E L+ Q   ++GI     T+N    + A+N GL+   F + L++ 
Sbjct: 60  PGYVLERQVLERLVMEQLQLQLAARTGIQVGDETLNEALGRIAQNNGLTLSQFRNVLEQD 119

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
           G    +F++ +  + I   + K +   +    + EI       K    ++         I
Sbjct: 120 GYDFPNFRENIRKELIISQLHKREVNDRVSVSKAEIDNFLATQKKHGNQDAQYHLAHILI 179

Query: 188 PDNKLQNQGFV---QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
              +  +   V   + + +   +              ++     +  G   +     L  
Sbjct: 180 TVPEAASPEQVQGAKAKAEQVLQQLREGTDFQKVAVTYSDGQQALEGGDLGWRKVGQLPT 239

Query: 245 QF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEK 299
            F   + +      +    +  G   + + + R              ++  +      E+
Sbjct: 240 LFVDVVPQLQVGEISKLIRSPSGFHIVKLLEYRGEGGQQLVTQTQARHILLRADELASEQ 299

Query: 300 HEAEYVKKLRSN 311
                + +LR  
Sbjct: 300 EVQLRLSQLRQR 311



 Score = 99.0 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 35/284 (12%), Positives = 87/284 (30%), Gaps = 18/284 (6%)

Query: 46  INGEV-ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           +N  V ++  +I   +A            + A   L    +   E         +     
Sbjct: 144 VNDRVSVSKAEIDNFLA-----TQKKHGNQDAQYHLAHILITVPEAASPEQVQGAKAKAE 198

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
             +Q  R      +   ++ D Q   +     +  +  +    V     L+ G +   I 
Sbjct: 199 QVLQQLREGTDFQKVAVTYSDGQQALEGGDLGWRKVGQLPTLFVDVVPQLQVGEISKLIR 258

Query: 165 ANKQKMKNITVREY---------LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
           +         +              +     +  ++L ++  VQ R+    +  L     
Sbjct: 259 SPSGFHIVKLLEYRGEGGQQLVTQTQARHILLRADELASEQEVQLRLSQLRQRILSGDDF 318

Query: 216 CNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAIC 273
               +  +      +  G   ++    + P+F+  ++       + P+ TQ G   + + 
Sbjct: 319 SELAQAHSDDKASALKGGDLGWVSPGQMIPRFEEAMRSLEPGEISEPFKTQFGWHVVQVL 378

Query: 274 DKRDLGGEIA-LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           D+R         +     +    K+E+    ++++LR  A + Y
Sbjct: 379 DRRQENVTEEFNRNRAKTEIHQRKVEEELENWLRQLRDEAYVEY 422


>gi|113461696|ref|YP_719765.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Haemophilus somnus
           129PT]
 gi|112823739|gb|ABI25828.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Haemophilus somnus
           129PT]
          Length = 314

 Score =  137 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/311 (16%), Positives = 112/311 (36%), Gaps = 16/311 (5%)

Query: 20  FVLIIFCIVPIVSYK-SWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQ 78
           F  ++F I+ ++S   +   + R+  T++G  I +  +     +L  +  N E  +IA+ 
Sbjct: 6   FKAVLFSIIGLLSITITAQAAERVVATVDGNPILESQVK---KVLGKRANNEENRQIALN 62

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
            +I + L ++ I++ GI      V+      A   GL+   F   LD QGI    ++Q +
Sbjct: 63  SIIDDLLVQKAIQELGIKVAPAHVDSVIENIAAQNGLTFGQFLDVLDYQGINYQAYRQQI 122

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE---------YLIRTVLFSIPD 189
           A Q +  +V              EI     K+     ++               +    +
Sbjct: 123 AYQILISEVRNQAIGSSVNVTREEIQDLGLKLFKQAKKQGKEKKVTAPEYNVRHILLKLN 182

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQY-LLESDLHPQFQ 247
             L +     K  +   +         +   K++         G   +   E+ +    +
Sbjct: 183 PLLNDAQAKAKLTQIRADILANKITFADAALKYSKDYLSGADGGSLGFMFPEAYVPEFAK 242

Query: 248 NLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK-AYLSAQNTPTKIEKHEAEYVK 306
            +    +   + P+ T+ G   + + D R+              Q    ++++   +++K
Sbjct: 243 VIRASKKGVISTPFKTEFGWHILEVTDIRNADITREAYMQEAYQQIVNQQLQEASGDWIK 302

Query: 307 KLRSNAIIHYY 317
            LR  A I Y+
Sbjct: 303 ALRKRAHIQYF 313


>gi|152978410|ref|YP_001344039.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Actinobacillus
           succinogenes 130Z]
 gi|150840133|gb|ABR74104.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Actinobacillus
           succinogenes 130Z]
          Length = 317

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 103/312 (33%), Gaps = 15/312 (4%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
                L    +  I S        ++  T+NGE I +  + + +     +       ++A
Sbjct: 6   LKAIALAAMGLFVISSGAQAVKVEQVVATVNGEPILESQLQRVM---GKRANTESNRRVA 62

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           V ++I + L ++ +++SG+  +   VN      A   GL+       LD QGI  + FK 
Sbjct: 63  VDKIIDDMLVQKAVKESGVKVNPAQVNQIVHNIADQNGLTYGQLLDALDYQGISLSQFKA 122

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR---------EYLIRTVLFSI 187
            ++ Q +  +V              ++    +KM                      +   
Sbjct: 123 NISNQILMAEVRNRSIGKGVDVSREQVEELSRKMLQQAKAGGNPKAITATQYKARHILLK 182

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQY-LLESDLHPQ 245
               L +     +  +   + +          + ++       + G   +   E+ +   
Sbjct: 183 LTPLLNDAQAKAQLTQIRADIQSGKTTFAEAAKNYSKDYLSGANGGDLGFAFPENYVPEF 242

Query: 246 FQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKHEAEY 304
            + +    Q   + P+ T+ G   + + D R                    ++ ++  ++
Sbjct: 243 AKMMTTAKQGVISAPFKTEFGWHILEVTDTRQGDITDVAYRQKAYETLVNEQLREYSKDW 302

Query: 305 VKKLRSNAIIHY 316
           VK LR +A I Y
Sbjct: 303 VKALRKHAEIKY 314


>gi|253995959|ref|YP_003048023.1| SurA domain-containing protein [Methylotenera mobilis JLW8]
 gi|253982638|gb|ACT47496.1| SurA domain protein [Methylotenera mobilis JLW8]
          Length = 434

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/319 (15%), Positives = 108/319 (33%), Gaps = 18/319 (5%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           L +F K+  + F+ + F  +  ++        RI   ++  VIT+ ++  RI  L  Q  
Sbjct: 2   LRNFSKI--SLFIALSFSQLNCLAAADVTKMDRIVAIVDQSVITEQELESRIVSLSAQLK 59

Query: 69  NG--------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
                      L K  ++ LI + L+ Q   ++GI  D   ++    + A    ++  +F
Sbjct: 60  KQGTELPEASILRKQILERLISDALQLQYAAQTGIKVDDMQLDKTIERIAEQNKMTVREF 119

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
              L++ GI    F+  +  +     + + +   +    E EI        +    +   
Sbjct: 120 YDALNQDGISVRKFRSDIRNEITIARLREREVESRVNVSESEIDNYLTTQASTNQNQDEY 179

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE---KFASKIHDVSIGKAQYL 237
                 I   +      VQK     +E    L    +  +    F+   + +  G   + 
Sbjct: 180 EISHILIRVPEDAATEDVQKAKTKVDEIFAALASGTSFAKVSASFSDAPNALEGGNIGWK 239

Query: 238 LESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQN 292
             + +   F   L    +   +    +  G   + + DKR     L  E     ++  + 
Sbjct: 240 QGAQMPALFLDALKAMQKGEVSAALRSPNGFHILKLTDKRGGSSPLIIEQTHARHILIKL 299

Query: 293 TPTKIEKHEAEYVKKLRSN 311
           +    EK     +  ++  
Sbjct: 300 SEVMSEKDAKTKMDGIKER 318



 Score = 93.2 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 52/140 (37%), Gaps = 2/140 (1%)

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
                    I  +++ ++   + ++   +E      K      +F+      + G   ++
Sbjct: 288 EQTHARHILIKLSEVMSEKDAKTKMDGIKERLDNGEKFEVLARQFSEDGTASNGGDLGWV 347

Query: 238 LESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG-GEIALKAYLSAQNTPT 295
              D  PQF+  +     N  + P ++  G   I + +++     + A +     +    
Sbjct: 348 NPGDTVPQFEKAMNSLQPNEISAPVLSPFGWHVIQVLERKKQDMSKEAARLKARQEIRAR 407

Query: 296 KIEKHEAEYVKKLRSNAIIH 315
           K ++   +++++LR  A + 
Sbjct: 408 KADEAYQDWIRELRDRAFVE 427


>gi|88810558|ref|ZP_01125815.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrococcus mobilis
           Nb-231]
 gi|88792188|gb|EAR23298.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrococcus mobilis
           Nb-231]
          Length = 430

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/320 (13%), Positives = 105/320 (32%), Gaps = 18/320 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYK---SWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN 69
           +K      ++ +  +V I +     +  +  RI   +N  V+   ++ + + +++ Q   
Sbjct: 1   MKTRVRSLIIFLALVVFIEAQTPLLAAQVLDRIVAVVNDSVVLQSELKEELIIVRQQLQR 60

Query: 70  G--------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
                     L+   +++LI++ L+     ++GI+ D  T++    + A    ++   F 
Sbjct: 61  QDMQLPDPRNLQHQVLEQLILKKLQLDAASRTGISVDDATLDAAVRRVAEQNQMTLSQFR 120

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
             L  + IG   F+  L  Q I   +       +      EI     + +     EY + 
Sbjct: 121 DALAAEAIGWEDFRDKLRDQIIISRLRHQVMQSRINVTPQEIAQFVAQQRGGQSAEYHLG 180

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEE-SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
            +L ++PD          +   +       +          ++     +  G   +  + 
Sbjct: 181 HILVALPDAASPQTIAQARDKAERIHRQLEQEASFETLAASYSDSQTALQGGDLGWRKQG 240

Query: 241 DLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI-- 297
           +L     + +        T    +  G     +  +R+    I  + +       T    
Sbjct: 241 ELPTLIAELISGLPVGKVTPVLRSPSGFHIFKLLARREGERHIITQTHARHILIETNAVV 300

Query: 298 -EKHEAEYVKKLRSNAIIHY 316
            ++     ++ LR    I  
Sbjct: 301 SDRDARRRLESLRKR--IEN 318



 Score = 86.7 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 15/139 (10%), Positives = 47/139 (33%), Gaps = 3/139 (2%)

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS-KIHDVSIGKAQYL 237
                   I  N + +    ++R++   +            +  +         G   ++
Sbjct: 286 QTHARHILIETNAVVSDRDARRRLESLRKRIENGDSFAALAKAHSDDSTSAFQGGDLGWV 345

Query: 238 LESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIA-LKAYLSAQNTPT 295
               +   F+ ++     +  + P+ T+ G   + + ++R      A  +   + Q    
Sbjct: 346 DPGRMVATFEQVMDSLQPDEISQPFHTRYGWHIVQVLNRRKQDTTEAYRREQAAQQIQNR 405

Query: 296 KIEKHEAEYVKKLRSNAII 314
           K++     ++++LR  A +
Sbjct: 406 KLQDETQLWLRQLREEAYV 424


>gi|170718609|ref|YP_001783810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haemophilus somnus
           2336]
 gi|168826738|gb|ACA32109.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haemophilus somnus
           2336]
          Length = 321

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 53/318 (16%), Positives = 115/318 (36%), Gaps = 17/318 (5%)

Query: 14  KLLTTY-FVLIIFCIVPIVSYK-SWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
           K +  + F  ++F I+ ++S   +   + R+  T++G  I +  +     +L  +  N E
Sbjct: 6   KKMKVFNFKAVLFSIIGLLSITITAQAAERVVATVDGNPILESQVK---KVLGKRANNEE 62

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
             +IA+  +I + L ++ I++ GI      V+      A   GL+   F   LD QGI  
Sbjct: 63  NRQIALNSIIDDLLVQKAIQELGIKVAPAHVDSVIENIAAQNGLTFGQFLDVLDYQGINY 122

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE---------YLIRT 182
             ++Q +A Q +  +V              EI     K+     ++              
Sbjct: 123 QAYRQQIAYQILISEVRNQAIGSSVNVTREEIQDLGLKLFKQAKKQGKEKKVTAPEYNVR 182

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQY-LLES 240
            +    +  L +     K  +   +         +   K++         G   +   E+
Sbjct: 183 HILLKLNPLLNDAQAKAKLTQIRADILANKITFADAALKYSKDYLSGADGGSLGFMFPEA 242

Query: 241 DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK-AYLSAQNTPTKIEK 299
            +    + +    +   + P+ T+ G   + + D R+              Q    ++++
Sbjct: 243 YVPEFAKVIRTSKKGVISTPFKTEFGWHILEVTDIRNADITREAYMQEAYQQIVNQQLQE 302

Query: 300 HEAEYVKKLRSNAIIHYY 317
              +++K LR  A I Y+
Sbjct: 303 ASGDWIKALRKRAHIQYF 320


>gi|260773615|ref|ZP_05882531.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio metschnikovii CIP
           69.14]
 gi|260612754|gb|EEX37957.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio metschnikovii CIP
           69.14]
          Length = 431

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/313 (13%), Positives = 107/313 (34%), Gaps = 12/313 (3%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +KL T     +   +             R+   +N  VI   DI   +  ++      + 
Sbjct: 1   MKLWTLALYTLTSLVSIATVQAQPVELDRVAVIVNSGVILQSDIDSALLTVRANAKTNQQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L +  +++LIV+TL++QE ++ G+  D NT+N    + A N   + E     +
Sbjct: 61  TLPPENILREQIIEKLIVDTLQQQEADRIGVRIDDNTLNDAITEIAHNNQQTPEQLRLSI 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            +QG+    F++ +  +    +        +   +  E+    + +   T      +   
Sbjct: 121 AEQGLTYPEFREQIRKEIAASEARNALVRRRINIIPAEVDTLAELLAQETSATVQYKISH 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             +  N  Q++  V+ +         +          ++     +  G   ++ + ++  
Sbjct: 181 IQLRFNDGQDKSEVEAQANKLVAELNQGADFSTMAITYSKGPRALQGGDWGWMRKEEMPT 240

Query: 245 QFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKH 300
            F +    +++ +   P+ +  G   + I D +    +        ++  + T    ++ 
Sbjct: 241 IFADQIKMQNKGSIIGPFRSGVGFHILKIDDIKGLETVAVTEVNARHILIKPTIILSDEG 300

Query: 301 EAEYVKKLRSNAI 313
               +  L     
Sbjct: 301 AKNQLNDLVRRIN 313



 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 49/140 (35%), Gaps = 3/140 (2%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLL 238
               +   P   L ++G   +                   ++++         G+  Y  
Sbjct: 284 NARHILIKPTIILSDEGAKNQLNDLVRRINAGEASFAELAQQYSQDPGSAAQNGELGYQT 343

Query: 239 ESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKAYLSAQNTPTK 296
                P+F++ ++       + P+ T  G   + + D+R++   + A+K          K
Sbjct: 344 PELYVPEFKHQIETLPVGTISEPFKTVHGWHIVEVLDRREVDRTDAAMKNRAYRILFNRK 403

Query: 297 IEKHEAEYVKKLRSNAIIHY 316
             +  + ++++LR+ A +  
Sbjct: 404 FNEEASTWLQELRAGAFVEI 423


>gi|121997812|ref|YP_001002599.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halorhodospira
           halophila SL1]
 gi|121589217|gb|ABM61797.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halorhodospira
           halophila SL1]
          Length = 427

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 40/313 (12%), Positives = 101/313 (32%), Gaps = 14/313 (4%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ-------- 66
           +    F+     +  + +  +     RI    + EV+   ++ + I  ++ Q        
Sbjct: 1   MKIRAFLCAATLLAGLPTLAASETLDRIVAVADQEVVLASELDQEIEQIRAQFFQRGQQP 60

Query: 67  KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
               +L +  ++ L+++ L+    + +GI  D  T++    + A    ++       L +
Sbjct: 61  PPADQLREQVLERLVMQRLQMGHAQGAGIQVDDATLDAAMQRIAAQNNMTLAQLRDALAQ 120

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
           +G+    F++ L  Q     + +     +      EI    +        EY +  +   
Sbjct: 121 EGMDMASFREDLREQITVERLQQAVVQQEVEVSPQEIEEAVEAAAAQDNMEYRVAHIRIG 180

Query: 187 IPDNKLQN--QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
            P+    +  +   ++  +  E++           E F+        GK  + L   L  
Sbjct: 181 TPEGASSDDLRAAGERAGQIREQAVDGESDFATLAETFSDAATASEGGKIGWRLPGQLPS 240

Query: 245 QFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG---GEIALKAYLSAQNTPTKIEKH 300
            F +++        + P     G   + + D+R       E     ++  +      E  
Sbjct: 241 AFADVVDGLEPGEISEPVQAADGFHIVKLIDRRSEDAQIVEETRARHILLRPGDGVEEDD 300

Query: 301 EAEYVKKLRSNAI 313
             + +   R    
Sbjct: 301 VRQRLDSFRERID 313



 Score = 98.6 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 50/148 (33%), Gaps = 3/148 (2%)

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV-S 230
                    R     +       +  V++R+    E             +++ +     S
Sbjct: 275 EDAQIVEETRARHILLRPGDGVEEDDVRQRLDSFRERIDEGESFEFLARQYSEEPGAEAS 334

Query: 231 IGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-L 288
            G   +     L   FQ  + +      + P+ T+ G   + + D+R+       +   +
Sbjct: 335 GGDIGWTRSGQLVASFQERMDELEVGEVSEPFRTEYGWHIVRVEDRRERDVTDDRRRERI 394

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           + Q    K ++   +++++LR  A + Y
Sbjct: 395 AQQIHERKSQEALEQWLRQLREEAYVDY 422


>gi|262198047|ref|YP_003269256.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliangium ochraceum
           DSM 14365]
 gi|262081394|gb|ACY17363.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliangium ochraceum
           DSM 14365]
          Length = 349

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 103/293 (35%), Gaps = 18/293 (6%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKL-----------QKINGELEKIAVQELIVETLKKQ 88
            R+   +N  VI   ++  R+A L              +   +L    + E+I E L  Q
Sbjct: 53  DRVAAVVNDSVILTSELDARLAPLTAGLANINDERERARRGEQLRSQQLDEMISEELVVQ 112

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
           E  KS +  D   V+    +  +  GL     ++ L +QG     +++ +  Q +    +
Sbjct: 113 EARKSKLNVDDKEVSAALAEIKQQNGLDDTQLAAALAQQGYSMQAYRKEVERQLLHRRAI 172

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD---A 205
                 +    + ++      M   +     +R     +      +   + +        
Sbjct: 173 NMLVRPRVTVTDEDVRVRYDTMSRRSAAVSKVRLKHALLSLPPNPSNELLAEAKSKAAAI 232

Query: 206 EESRLRLPKDCNKLEKFASKIH-DVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVT 263
            E+        ++  +++  I+   S G   ++    +  +++ +     +     P   
Sbjct: 233 VEAVRGGASFDDQARQYSDDINTRDSGGDLGWIERGSIATEWEVIVFSMEEGEVRGPVSG 292

Query: 264 QKGVEYIAICD--KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             G+    + +  K DL    A+K  L ++    +++K    ++++LR  A I
Sbjct: 293 PGGLHVFYVEELAKSDLEEFDAVKEQLQSEIYREEMDKEITAWLQELRDKAFI 345


>gi|94499974|ref|ZP_01306509.1| Parvulin-like peptidyl-prolyl isomerase [Oceanobacter sp. RED65]
 gi|94427832|gb|EAT12807.1| Parvulin-like peptidyl-prolyl isomerase [Oceanobacter sp. RED65]
          Length = 436

 Score =  136 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 53/323 (16%), Positives = 120/323 (37%), Gaps = 14/323 (4%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
            +K  +  +  I+ +T   +L IF  V +           I   ++  +I + ++ +RI 
Sbjct: 3   MTKDKSMTTSIIQQITKTALLGIFA-VSLPLQAQIQTIDSIAAVVDDGIIMESELEQRID 61

Query: 62  LLKLQKI------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
            +K Q        +  L+   ++ LI+E L+ Q  E+SG+      +N   +  A+  GL
Sbjct: 62  TIKRQSQGMRLPPDDILQDQVLERLIIENLQLQMAERSGMRISDEQLNQTIINIAKQNGL 121

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
           +  +F   L+K G+     ++ +  + I  +V +     K    E ++      ++  + 
Sbjct: 122 TLREFKKALEKDGVSYAQAREQIRRERIISEVQRYRVGSKINISEQDVDNFLNSVRGKSA 181

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIG 232
                R     I      ++  +++    AE+   +L    +        +   + +  G
Sbjct: 182 TAEEYRLGHILIQVPSQASRAQLKRAQNKAEDIVKKLRNGADFQQMAISQSEGRNALKGG 241

Query: 233 KAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYL 288
              +  E++L   F +++    +   +NP  +  G   I I DKR             ++
Sbjct: 242 DLGWRKEAELPTLFADIVPDLKKGQVSNPIRSASGYHIIKISDKRGGDTQMVRQTKARHI 301

Query: 289 SAQNTPTKIEKHEAEYVKKLRSN 311
             Q    +  +   + +  L   
Sbjct: 302 LIQENEIRNSQQAKKLINDLYKK 324



 Score = 89.0 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 56/146 (38%), Gaps = 3/146 (2%)

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSI 231
            T      +     I +N+++N    +K I D  +            ++++      +S 
Sbjct: 289 DTQMVRQTKARHILIQENEIRNSQQAKKLINDLYKKLKNGADFDELAKEYSDDPGSKLSG 348

Query: 232 GKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAYLS 289
           G   ++ + D+ P F+  +    +   + P+ ++ G   + + D R     E   +    
Sbjct: 349 GDLGWVNQGDMVPAFEQTMNATKKGQISEPFKSRFGWHVLQVTDYRQKDVGEEIQRNQAR 408

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAIIH 315
                 + E+    +++++R++A + 
Sbjct: 409 QLLYSRRFEEELPIWLRQIRADAYVE 434


>gi|86148121|ref|ZP_01066421.1| parvulin-like peptidyl-prolyl isomerase [Vibrio sp. MED222]
 gi|218708410|ref|YP_002416031.1| putative parvulin-like peptidyl-prolyl isomerase [Vibrio splendidus
           LGP32]
 gi|85834108|gb|EAQ52266.1| parvulin-like peptidyl-prolyl isomerase [Vibrio sp. MED222]
 gi|218321429|emb|CAV17381.1| putative Parvulin-like peptidyl-prolyl isomerase [Vibrio splendidus
           LGP32]
          Length = 431

 Score =  136 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 38/311 (12%), Positives = 108/311 (34%), Gaps = 12/311 (3%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--- 69
           + L     + I        SY +      ++  +N  VI   DI   +  L+        
Sbjct: 1   MTLWKRTLIAIAAACTLSTSYAAPVELDSVKVIVNEGVILQSDIDTSMKTLRANAKKSGQ 60

Query: 70  -----GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L +  +++LI++T++ QE E+ G+  D   ++      A++   + +  ++ +
Sbjct: 61  TLPSQDVLNEQVLEKLIIDTIQTQEAERIGVRIDDARLDQAIEGIAKDNNQTVQQLTASV 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            ++G+  N F++ +  +    +        +   L  E+      +   T      +   
Sbjct: 121 AEEGLSYNAFREQVRKEIAASEARNALVRRRINILPAEVDNLADILAQETNATVQYKIGH 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             +  N  Q +  ++ +  D  E              ++     +  G   ++ + ++  
Sbjct: 181 IQLRFNDDQTKEELEAQATDLVEELNNGKDFSTMAYTYSKGPKALQGGDWGWMRKEEMPT 240

Query: 245 QFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKH 300
            F +    +++ +   P+ +  G   + I D +    +        ++  + T    +  
Sbjct: 241 IFADQIKMQNKGSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDDG 300

Query: 301 EAEYVKKLRSN 311
             E ++++   
Sbjct: 301 AKEQLEEITRR 311



 Score = 80.5 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 89/276 (32%), Gaps = 14/276 (5%)

Query: 44  TTING-EVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             ++    I   + +  +            +    +EL  +     E   +G  F +   
Sbjct: 157 AEVDNLADILAQETNATVQYKIGHIQLRFNDDQTKEELEAQATDLVEELNNGKDFSTMAY 216

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
            Y     A   G    D+     ++       +  +  +       ++        +E  
Sbjct: 217 TYSKGPKALQGG----DWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIEDV 272

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                  +  +  R  LI+  +    D   +    + +R+   E          +  +++
Sbjct: 273 KGLETVAVTEVNARHILIKPTVILSDDGAKEQLEEITRRVNAGEA------SFGDLAQQY 326

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG- 279
           +      V  G+  Y       P+F++ ++   +   + P+ T  G   + + D+R++  
Sbjct: 327 SQDPGSAVQDGELGYQTPDLYVPEFKHQVETLPEGKISAPFKTVHGWHIVEVLDRREVDR 386

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            + ALK          K  +    +++++R++A + 
Sbjct: 387 TDSALKNKAYQILFNRKFNEEVGAWLQEVRASAFVE 422


>gi|194364448|ref|YP_002027058.1| SurA domain [Stenotrophomonas maltophilia R551-3]
 gi|194347252|gb|ACF50375.1| SurA domain [Stenotrophomonas maltophilia R551-3]
          Length = 447

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 37/321 (11%), Positives = 101/321 (31%), Gaps = 22/321 (6%)

Query: 13  IKLLTTYFVLIIFCIVPIVS-----YKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK 67
           +       +  +  +  + +      +      RI   ++ +VI   ++ + IA +K Q 
Sbjct: 1   MTKRFPVLLASLLAVSSVSAPLQVLAQEAQPLDRIAAVVDEDVILQSELQRAIANIKAQY 60

Query: 68  --------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                       L +  ++ L++  L+    + SGI      +N      A+  G + + 
Sbjct: 61  VGRENQLPPEDVLSRQVLERLVLVKLQVARAQGSGIRVGDQELNQAMNAIAQQNGSTLDA 120

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
               L   GI  N F+  +  +     + ++    +    E E+ A  ++   +  + +L
Sbjct: 121 LRQRLAHDGIDFNDFRASVRDEITVQRLRQSFAQSRISVSEGEVDAALKQQATVGNQYHL 180

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKIHDVSIGKAQYLL 238
              ++              QK+    +    +          +++   + +  G   +  
Sbjct: 181 AHILIAVPDGANADQIATGQKKADGVKALLDKGELDFNAAAVRYSDSPNALEGGDLGWRS 240

Query: 239 ESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDL-------GGEIALKAYLSA 290
             ++   F  ++ K        P     G + + + + RD                ++  
Sbjct: 241 LDEIPQAFAQMMEKMKAGEVVGPIRGPSGFQLLKLVEVRDASAAAGANTVTEYHGRHILV 300

Query: 291 QNTPTKIEKHEAEYVKKLRSN 311
           +    + +      +  LR+ 
Sbjct: 301 RVDDHQTDAAAKAKIDTLRAR 321



 Score = 85.5 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 41/155 (26%), Gaps = 3/155 (1%)

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           E+          TV EY  R +L    D+   +     K                   E 
Sbjct: 277 EVRDASAAAGANTVTEYHGRHIL-VRVDDHQTDAAAKAKIDTLRARIAGGADFQTVAKES 335

Query: 222 FASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
                     G   +       P F Q +        + P+ T  G   +     R    
Sbjct: 336 SEDSNSKGQGGDLGWFPADAFGPAFGQQVAGIQDGGVSQPFRTDAGWHILQRVATRQTDV 395

Query: 281 EIAL-KAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                +A +       K+E     ++++LR  A +
Sbjct: 396 TNDNQRAQVRETIGRRKLEDEYNRFLQELRGEAYV 430


>gi|319639633|ref|ZP_07994380.1| peptidyl-prolyl cis-trans isomerase [Neisseria mucosa C102]
 gi|317399204|gb|EFV79878.1| peptidyl-prolyl cis-trans isomerase [Neisseria mucosa C102]
          Length = 329

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 85/284 (29%), Gaps = 17/284 (5%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKL------QKINGELEKIAVQELIVETLKKQEIEK 92
           S  I   ++ EVIT   + + +A  +       Q    EL +  + ++I ++L  Q  ++
Sbjct: 52  SDGIAAVVDNEVITHRQVEQAVAQARQTMPKGTQMDANELRQQVLAQMINQSLILQAGKR 111

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I    + +      +      SA       D          + +  Q+I      +  
Sbjct: 112 RNIQATDSEIEAVIAHNPNIKNPSAAVRQDIADS------IIVEKVRQQAIMQ---NSRV 162

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
                   +E    +                   I  +        +  I+         
Sbjct: 163 SDSEVARYIEQAKQQGITLPEADPVRQYHAQHILIKADNDNAAVGAESTIRKIYSQARSG 222

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                   +++      + G   +  +  +   F+  + K      + P  TQ G   I 
Sbjct: 223 ADFGGLARQYSQDSSAGNGGDLGWFADGMMVAPFEEAVHKLKPGQISAPVRTQFGWHIIK 282

Query: 272 ICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           + D R+    E   +  +    +  K ++     +++L S++ +
Sbjct: 283 LNDVREAGTPEERQQNAVRQYLSQQKAQQATTNLLRELHSSSYV 326


>gi|122070665|sp|Q9I5U3|SURA_PSEAE RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
          Length = 417

 Score =  135 bits (340), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 108/304 (35%), Gaps = 15/304 (4%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL--------QKINGELEKIA 76
             ++   ++       R+   ++ +VI    + +R+  +                L +  
Sbjct: 3   AALLCSFAHAEVVPLDRVVAIVDNDVIMQSQLDQRLREVHQTLLKRGAPLPPEHVLTQQV 62

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           ++ LI+E +++Q  ++SGI      +N      A+  G+S E F + L + G+     ++
Sbjct: 63  LERLIIENIQQQIGDRSGIRISDEELNQAMGTIAQRNGMSLEQFQTALTRDGLSYADARE 122

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
            +  + +   V +     +    E E+                 R     IP  +  +  
Sbjct: 123 QVRREMVISRVRQRRVAERIQVSEQEVKNFLASDMGKIQLSEEYRLANILIPVPEAASSD 182

Query: 197 FVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK- 252
            +Q   + A+E   +L +  +        ++  + +  G+  +   + L   F +++   
Sbjct: 183 VIQAAARQAQELYQQLKQGADFGQLAISRSAGDNALEGGEIGWRKAAQLPQPFDSMIGSL 242

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGG---EIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
           +  + T P  T  G   + + +KR       +     ++  + +  + E    +  +KL 
Sbjct: 243 AVGDVTEPVRTPGGFIILKLEEKRGGSKMVRDEVHVRHILLKPSEIRSEAETEKLAQKLY 302

Query: 310 SNAI 313
               
Sbjct: 303 ERIQ 306



 Score = 92.0 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 15/139 (10%), Positives = 49/139 (35%), Gaps = 3/139 (2%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
                 +  ++++++   +K  +   E            + F+      ++ G   ++  
Sbjct: 277 HVRHILLKPSEIRSEAETEKLAQKLYERIQSGEDFGELAKSFSEDPGSALNGGDLNWIDP 336

Query: 240 SDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-YLSAQNTPTKI 297
             L P+F+  +    Q   + P+ +Q G   + +  +R        +     +     K 
Sbjct: 337 EALVPEFRQVMNDTPQGELSKPFRSQFGWHILQVLGRRATDSSEKFREQQAVSVLRNRKY 396

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           ++    +++++R  A +  
Sbjct: 397 DEELQAWLRQIRDEAYVEI 415


>gi|299133711|ref|ZP_07026905.1| SurA domain protein [Afipia sp. 1NLS2]
 gi|298591547|gb|EFI51748.1| SurA domain protein [Afipia sp. 1NLS2]
          Length = 314

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 59/283 (20%), Positives = 111/283 (39%), Gaps = 1/283 (0%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSG 94
             A +  +   +NGE IT  DI +R  L+ L        +  + +LI + LK +E +K G
Sbjct: 29  PSARAQAVVVMVNGEPITTYDIEQRAKLIALTTHKSAPRQEVINQLIDDRLKIKEAKKFG 88

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
           I    + ++  +    +  G+SA+  S  L  QG+     K  ++  + W  +V+  +  
Sbjct: 89  INMTPSEIDSSYAAMGQRMGMSADQLSKVLMAQGVRPETMKLRMSADTAWGALVRGRYKQ 148

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
                E ++ A      +    E     +   +      +   V ++ K   E      +
Sbjct: 149 SLMVSEHDVRAASGGDSSPQDTESYEYHLRPVVIFVPRGSSSAVVEQRKKEAEIIRDRVQ 208

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAIC 273
            C +       +   +I        +DL    + LL K+   + T P VT++G+E + +C
Sbjct: 209 SCAEAATTFKSLRQGTIRDTIIKTSADLPANLRELLDKTPVGHMTPPEVTRQGIEMVVLC 268

Query: 274 DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           D++    +   K     +    K E     Y+  LR  A+I Y
Sbjct: 269 DRKVTSADTPAKRAARDKLFAQKYEAKSKSYLDDLRKAAMIEY 311


>gi|269960923|ref|ZP_06175293.1| survival protein SurA [Vibrio harveyi 1DA3]
 gi|269834363|gb|EEZ88452.1| survival protein SurA [Vibrio harveyi 1DA3]
          Length = 427

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 38/311 (12%), Positives = 114/311 (36%), Gaps = 16/311 (5%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE---- 71
           +  +  L+   ++      +     ++   +N  VI   DI+  +  L+           
Sbjct: 1   MKIWKSLLFTTLLSCGVTAAPVELDKVAVIVNDGVILQSDINTAMKTLQANARQSGKSLP 60

Query: 72  ----LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
               L+   V++LI++TL+ QE E+ G+  D N +N    + ARN   S E  ++ +  +
Sbjct: 61  SASVLKDQVVEKLIIDTLQGQEAERIGVRIDDNRLNQAIAEIARNNNQSVEQLAASVQAE 120

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
           G+    F++ +  +    +        +   L  E+ +   ++   T      +     +
Sbjct: 121 GLSYPEFREQIRKEIAASEARNALVRRRINILPAEVDSLADQLATETNATVQYKIGHIQL 180

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
             +  +++  V+       +              ++     +  G   ++ + ++   F 
Sbjct: 181 RFSDDKDKSEVEAEANALVKKLKDGADFSEMAYTYSKGPKALQGGDWGWMRKEEMPTIFA 240

Query: 248 NL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQ----NTPTKIEK 299
           +    +++ +   P+ +  G   + + D +    +        ++  +     +    +K
Sbjct: 241 DQIKMQNKGSIIGPFRSGIGFHILKVEDVKGLETVAVTEVNARHILIKPTVILSDEGAQK 300

Query: 300 HEAEYVKKLRS 310
              E+++++++
Sbjct: 301 ELNEFIRRIKA 311



 Score = 80.1 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 17/142 (11%), Positives = 47/142 (33%), Gaps = 4/142 (2%)

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQY 236
              R +L              +   +     +           +++         G+  Y
Sbjct: 280 VNARHILIKPTVILSDEGAQKE-LNEFIRRIKAGEATFAQLATQYSQDPGSAAQNGELGY 338

Query: 237 LLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKAYLSAQNTP 294
                  P+F++ ++     + + P+ T  G   + + D+R +   + A+K         
Sbjct: 339 QTPDLYVPEFKHQVETLPVGSISEPFKTVHGWHIVEVLDRRQVDRTDSAMKNKAYRILFN 398

Query: 295 TKIEKHEAEYVKKLRSNAIIHY 316
            K  +    ++++LR++A +  
Sbjct: 399 RKFNEEAGAWMQELRASAFVEI 420


>gi|28897112|ref|NP_796717.1| survival protein SurA [Vibrio parahaemolyticus RIMD 2210633]
 gi|153838965|ref|ZP_01991632.1| chaperone SurA [Vibrio parahaemolyticus AQ3810]
 gi|260361686|ref|ZP_05774713.1| chaperone protein SurA [Vibrio parahaemolyticus K5030]
 gi|260896920|ref|ZP_05905416.1| chaperone protein SurA [Vibrio parahaemolyticus Peru-466]
 gi|260903392|ref|ZP_05911787.1| chaperone protein SurA [Vibrio parahaemolyticus AQ4037]
 gi|81728608|sp|Q87ST4|SURA_VIBPA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|28805321|dbj|BAC58601.1| survival protein SurA [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747553|gb|EDM58485.1| chaperone SurA [Vibrio parahaemolyticus AQ3810]
 gi|308088746|gb|EFO38441.1| chaperone protein SurA [Vibrio parahaemolyticus Peru-466]
 gi|308109029|gb|EFO46569.1| chaperone protein SurA [Vibrio parahaemolyticus AQ4037]
 gi|308115514|gb|EFO53054.1| chaperone protein SurA [Vibrio parahaemolyticus K5030]
 gi|328471910|gb|EGF42787.1| survival protein SurA [Vibrio parahaemolyticus 10329]
          Length = 427

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 38/310 (12%), Positives = 113/310 (36%), Gaps = 12/310 (3%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING----- 70
           +  +  ++   ++   +  +     ++   +N  VI   DI+  +  L+           
Sbjct: 1   MKIWKSILFTTLLSCGAVAAPVELDKVAVIVNDGVILQSDINTAMKTLQANARQSGKSLP 60

Query: 71  ---ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
               L++  V++LI++TL+ QE ++ G+  D N +N    + ARN   S E+ ++ +  +
Sbjct: 61  SASVLKEQVVEKLIIDTLQGQEADRIGVRIDDNRLNQAIAEIARNNNQSVEELAASVQAE 120

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
           G+    F++ +  +    +        +   L  E+ +   ++   T      +     +
Sbjct: 121 GLSYPEFREQIRKEIAASEARNALVRRRINILPAEVDSLADQLAKETNATVQYKIGHIQL 180

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
                Q++  V+ + K   +              ++     +  G   ++ + ++   F 
Sbjct: 181 RFTDGQDKSEVEAQAKALVKKLNDGADFTEMAYTYSKGPKALQGGDWGWMRKEEMPTIFA 240

Query: 248 NL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAE 303
           +    +++ +   P+ +  G   + I D +    +        ++  + T    ++   +
Sbjct: 241 DQIKMQNKGSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDEGAKK 300

Query: 304 YVKKLRSNAI 313
            + +      
Sbjct: 301 QLNEFVRRIK 310



 Score = 80.5 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/270 (10%), Positives = 77/270 (28%), Gaps = 4/270 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++      L  +       KI   +L     + +   ++        +N       
Sbjct: 151 ILPAEVDSLADQLAKETNATVQYKIGHIQLRFTDGQDKSEVEAQAKALVKKLNDGADFTE 210

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                S    +      G         +    I      +        +   I   +   
Sbjct: 211 MAYTYSKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIEDVK 270

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK-LEKFASKI-HD 228
              TV    +      I    + +    +K++ +             +   +++      
Sbjct: 271 GLETVAVTEVNARHILIKPTVILSDEGAKKQLNEFVRRIKAGEATFAQLASQYSQDPGSA 330

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKA 286
              G+  Y       P+F++ ++     + + P+ T  G   + + D+R +   + A+K 
Sbjct: 331 AQDGELGYQTPDLYVPEFKHQVETLPVGSISEPFKTVHGWHIVEVLDRRQVDRTDSAMKN 390

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                    K  +    ++++LR++A +  
Sbjct: 391 KAYRILFNRKFNEEAGAWMQELRASAFVEI 420


>gi|77165200|ref|YP_343725.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus oceani
           ATCC 19707]
 gi|254434050|ref|ZP_05047558.1| SurA N-terminal domain family [Nitrosococcus oceani AFC27]
 gi|122070652|sp|Q3JAF1|SURA_NITOC RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|76883514|gb|ABA58195.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus oceani
           ATCC 19707]
 gi|207090383|gb|EDZ67654.1| SurA N-terminal domain family [Nitrosococcus oceani AFC27]
          Length = 426

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 46/309 (14%), Positives = 108/309 (34%), Gaps = 17/309 (5%)

Query: 19  YFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-------- 70
             V I     PI S+ +     RI   +N +++ + ++ + +  ++ Q            
Sbjct: 4   VLVTIFVLFWPIGSFAAI-NLDRIVAVVNEDIVLESELEQMVRTVQDQLAAQGTSLPPGY 62

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
            LE+  ++ L++E L+ Q   ++GI     T+N    + A++ GL+   F + L++ G  
Sbjct: 63  VLERQVLERLVMEQLQLQLAARTGIQVGDETLNEALGRIAQDNGLTLSQFRNVLEQDGYD 122

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
              F++ +  + I   + K +   +    + EI       K    ++         I   
Sbjct: 123 FPAFRENIRKELIISQLHKREVNDRVSVSKAEIDNFLTNQKKRGNQDAQYHLAHILITVP 182

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQF- 246
           +  +   VQ     AE+   +L +  +       ++     +  G   +     L   F 
Sbjct: 183 EAASPEQVQAAKAKAEQVLQQLREGADFQKVAVTYSDGQQALEGGDLGWRKMGQLPTLFV 242

Query: 247 QNLLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEA 302
             + +    + +    +  G   + + D R              ++  +      E+   
Sbjct: 243 DVVPQLQAGDISKLIRSPSGFHIVKLLDYRGEGQQQLVTQTQARHILLRADELASEREVQ 302

Query: 303 EYVKKLRSN 311
             + +LR  
Sbjct: 303 LRLSQLRQR 311



 Score = 98.6 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 85/280 (30%), Gaps = 10/280 (3%)

Query: 46  INGEV-ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           +N  V ++  +I   +   K +        +A   LI         +       +  V  
Sbjct: 144 VNDRVSVSKAEIDNFLTNQKKRGNQDAQYHLA-HILITVPEAASPEQVQAAKAKAEQVLQ 202

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS---IWPDVVKNDFMLKYGNLE- 160
              + A    ++          +G      K          + P +   D      +   
Sbjct: 203 QLREGADFQKVAVTYSDGQQALEGGDLGWRKMGQLPTLFVDVVPQLQAGDISKLIRSPSG 262

Query: 161 -MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
              +     + +         +     +  ++L ++  VQ R+    +  L         
Sbjct: 263 FHIVKLLDYRGEGQQQLVTQTQARHILLRADELASEREVQLRLSQLRQRILSGDDFSELA 322

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD 277
           +  +      +  G   ++    + P+F+  ++       + P+ TQ G   + + D+R 
Sbjct: 323 QAHSDDKASALKGGDLGWVSPGQMIPRFEEAMRSLEPGEISEPFKTQFGWHVVQVLDRRQ 382

Query: 278 LG-GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
               E   +     +    K+E+    ++++LR  A + Y
Sbjct: 383 ENMTEEFNRNRAKMEIRQRKVEEELENWLRQLRDEAYVEY 422


>gi|320157503|ref|YP_004189882.1| survival protein SurA (Peptidyl-prolyl cis-trans isomerase SurA)
           [Vibrio vulnificus MO6-24/O]
 gi|319932815|gb|ADV87679.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
           isomerase SurA) [Vibrio vulnificus MO6-24/O]
          Length = 432

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 40/312 (12%), Positives = 115/312 (36%), Gaps = 16/312 (5%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN----- 69
            +  +  L++  +V   +  +     ++   +N  VI   DI      L+          
Sbjct: 4   KMNIWKTLLLGMLVTGSAVSAPVELDKVAVIVNDGVILQSDIDTATKTLRANAKKSGQAL 63

Query: 70  ---GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
                L +  V +LI++TL+ QE ++ G+  D   +N    + ARN   + ++ S+ +  
Sbjct: 64  PDADVLNEQIVDKLIIDTLQTQEADRIGVRIDDTRLNQAIEEIARNNNQTIDELSAAIAS 123

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
           +G+    F++ +  +    +        +   L  E+    + +   T      R     
Sbjct: 124 EGVSYAEFREQIRKEMAASEARNALVRRRINILPAEVDNLAELLSKETNASVEYRIGHIQ 183

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
           +     Q++  ++ + K+  E   +          ++     +  G   ++ + ++   F
Sbjct: 184 LRFTDGQDKSALEAQAKELVEKLKQGADFSTMAYTYSKGPKALQGGDWGWMRKEEMPTIF 243

Query: 247 QNL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQ----NTPTKIE 298
            +    +++ +   P+ +  G   + I D +    +        ++  +     +    +
Sbjct: 244 ADQIKMQNKGSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILLKPTVILSDEGAQ 303

Query: 299 KHEAEYVKKLRS 310
           +   E+++++R+
Sbjct: 304 RELNEFIRRIRA 315



 Score = 78.9 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/270 (10%), Positives = 75/270 (27%), Gaps = 4/270 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++     LL  +       +I   +L     + +   ++        +        
Sbjct: 155 ILPAEVDNLAELLSKETNASVEYRIGHIQLRFTDGQDKSALEAQAKELVEKLKQGADFST 214

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                S    +      G         +    I      +        +   I   +   
Sbjct: 215 MAYTYSKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIEDVK 274

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC-NKLEKFASKI-HD 228
              TV    +      +    + +    Q+ + +                ++++      
Sbjct: 275 GLETVAVTEVNARHILLKPTVILSDEGAQRELNEFIRRIRAGEATFGELAQQYSQDPGSA 334

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKA 286
              G+  Y       P+F++ ++       + P+ T  G   + + D+R++   + A+K 
Sbjct: 335 AQDGELGYQTPDLYVPEFKHQVETLPVGTISEPFKTVHGWHIVEVLDRREVDRTDSAMKN 394

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                    K  +    ++++LR+ A +  
Sbjct: 395 KAYRILFNRKFNEEVGAWMQELRAGAFVEI 424


>gi|153820172|ref|ZP_01972839.1| survival protein SurA [Vibrio cholerae NCTC 8457]
 gi|126509282|gb|EAZ71876.1| survival protein SurA [Vibrio cholerae NCTC 8457]
          Length = 393

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 35/313 (11%), Positives = 108/313 (34%), Gaps = 12/313 (3%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +KL     + ++  +    ++        +   +N  VI   D+   +  +K      + 
Sbjct: 1   MKLWKPTLISVLSALTLFNAHAEPKQLDSVAVIVNSGVILQSDVDSALKTIKANAKQNKQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L +  +++LI++TL++QE ++ G+  D N +N    + A+N   + E   + +
Sbjct: 61  PLPQETVLREQVLEKLIIDTLQQQEADRIGVKIDDNRLNEAIKEIAKNNQQTQEQLIASV 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            ++G+    F++ +  +    D        +   L  E+    + +   T      +   
Sbjct: 121 AQEGLTYPEFREQVRKEMAASDARNALVRRRINILPAEVDTLAELLAQETDATVQYKISH 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             +  +  Q++   +                      ++     +  G   ++ + ++  
Sbjct: 181 IQLRVDDGQDKSTAETLANKLVNDLRNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMPT 240

Query: 245 QFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKH 300
            F +    +++ +   P+ +  G   + I D +    +        ++  + T    ++ 
Sbjct: 241 IFADQIKMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTIILSDEG 300

Query: 301 EAEYVKKLRSNAI 313
             + + +      
Sbjct: 301 AQKQLNEFVQRIK 313



 Score = 57.4 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 65/232 (28%), Gaps = 3/232 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++     LL  +       KI+  +L V+  + +   ++      N +        
Sbjct: 154 ILPAEVDTLAELLAQETDATVQYKISHIQLRVDDGQDKSTAETLANKLVNDLRNGADFAQ 213

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                S    +      G         +    I      +        +   I       
Sbjct: 214 MAYAYSKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIDDVK 273

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKI-HD 228
              TV    +      I    + +    QK++ +  +             ++++      
Sbjct: 274 GLETVAVTEVNARHILIKPTIILSDEGAQKQLNEFVQRIKNGEVTFAELAQQYSQDPGSA 333

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG 279
              G+  Y       P+F++ ++       + P+ T  G   + + D+R++ 
Sbjct: 334 AQKGELGYQTPDLYVPEFKHQIETLPVGQISEPFKTVHGWHIVEVLDRREVD 385


>gi|326423746|ref|NP_759646.2| survival protein SurA [Vibrio vulnificus CMCP6]
 gi|121956501|sp|Q8DED4|SURA_VIBVU RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|319999108|gb|AAO09173.2| Survival protein surA precursor (Peptidyl-prolyl cis-trans
           isomerase surA) [Vibrio vulnificus CMCP6]
          Length = 428

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 40/311 (12%), Positives = 115/311 (36%), Gaps = 16/311 (5%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN------ 69
           +  +  L++  +V   +  +     ++   +N  VI   DI      L+           
Sbjct: 1   MNIWKTLLLGMLVTGSAVSAPVELDKVAVIVNDGVILQSDIDTATKTLRANAKKSGQALP 60

Query: 70  --GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
               L +  V +LI++TL+ QE ++ G+  D   +N    + ARN   + ++ S+ +  +
Sbjct: 61  DADVLNEQIVDKLIIDTLQTQEADRIGVRIDDTRLNQAIEEIARNNNQTIDELSAAIASE 120

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
           G+    F++ +  +    +        +   L  E+    + +   T      R     +
Sbjct: 121 GVSYAEFREQIRKEMAASEARNALVRRRINILPAEVDNLAELLSKETNASVEYRIGHIQL 180

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
                Q++  ++ + K+  E   +          ++     +  G   ++ + ++   F 
Sbjct: 181 RFTDGQDKSALEAQAKELVEKLKQGADFSTMAYTYSKGPKALQGGDWGWMRKEEMPTIFA 240

Query: 248 NL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQ----NTPTKIEK 299
           +    +++ +   P+ +  G   + I D +    +        ++  +     +    ++
Sbjct: 241 DQIKMQNKGSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILLKPTVILSDEGAQR 300

Query: 300 HEAEYVKKLRS 310
              E+++++R+
Sbjct: 301 ELNEFIRRIRA 311



 Score = 79.3 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/270 (10%), Positives = 75/270 (27%), Gaps = 4/270 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++     LL  +       +I   +L     + +   ++        +        
Sbjct: 151 ILPAEVDNLAELLSKETNASVEYRIGHIQLRFTDGQDKSALEAQAKELVEKLKQGADFST 210

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                S    +      G         +    I      +        +   I   +   
Sbjct: 211 MAYTYSKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIEDVK 270

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC-NKLEKFASKI-HD 228
              TV    +      +    + +    Q+ + +                ++++      
Sbjct: 271 GLETVAVTEVNARHILLKPTVILSDEGAQRELNEFIRRIRAGEATFGELAQQYSQDPGSA 330

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKA 286
              G+  Y       P+F++ ++       + P+ T  G   + + D+R++   + A+K 
Sbjct: 331 AQDGELGYQTPDLYVPEFKHQVETLPVGTISEPFKTVHGWHIVEVLDRREVDRTDSAMKN 390

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                    K  +    ++++LR+ A +  
Sbjct: 391 KAYRILFNRKFNEEVGAWMQELRAGAFVEI 420


>gi|163802667|ref|ZP_02196558.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Vibrio sp. AND4]
 gi|159173555|gb|EDP58375.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Vibrio sp. AND4]
          Length = 427

 Score =  135 bits (339), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 40/310 (12%), Positives = 111/310 (35%), Gaps = 12/310 (3%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE---- 71
           +  +  LI+  ++      + A   ++   +N  VI   DI   +  L+           
Sbjct: 1   MKIWKSLIVTTLLSCGVTAAPAELDKVAVIVNDGVILQSDIDTAMKTLQANARQSGKSLP 60

Query: 72  ----LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
               L++  V++LI++TL+ QE ++ G+  D N +N    + ARN   S E  ++ +  +
Sbjct: 61  SAGVLKEQVVEKLIIDTLQGQEAKRIGVRIDDNRLNQAIAEIARNNNQSVEQLAASVQME 120

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
           G+  + F++ +  +    +        +   L  E+ +   ++   T      +     +
Sbjct: 121 GLNYSEFREQIRKEIAASEARNALVRRRINILPAEVDSLTDQLAQETNATVQYKIGHIQL 180

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
             +  +++  V+       +              ++     +  G   ++ + ++   F 
Sbjct: 181 RFSDDKDKSEVEAEANALVKKLKAGADFSEMAYTYSKGPKALQGGDWGWMRKEEMPTIFA 240

Query: 248 NL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAE 303
           +    +++ N   P+ +  G   + I D +    +        ++  + T    +    +
Sbjct: 241 DQIKMQNKGNIIGPFRSGIGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDDGAKK 300

Query: 304 YVKKLRSNAI 313
            + +      
Sbjct: 301 ELNEFIRRIK 310



 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 50/140 (35%), Gaps = 3/140 (2%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLL 238
               +   P   L + G  ++  +     +           +++         G+  +  
Sbjct: 281 NARHILIKPTVILSDDGAKKELNEFIRRIKAGEASFGQLATQYSQDPGSAAQNGELGFQT 340

Query: 239 ESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKAYLSAQNTPTK 296
                P+F++ ++     + + P+ T  G   + + D+R +   + A+K          K
Sbjct: 341 PDLYVPEFKHQVETLPVGSISEPFKTVHGWHIVEVLDRRQVDRTDSAIKNKAYRILFNRK 400

Query: 297 IEKHEAEYVKKLRSNAIIHY 316
             +    ++++LR++A +  
Sbjct: 401 FNEEAGAWMQELRASAFVEI 420


>gi|121956507|sp|Q7MP84|SURA_VIBVY RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
          Length = 428

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/311 (12%), Positives = 115/311 (36%), Gaps = 16/311 (5%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN------ 69
           +  +  L++  +V   +  +     ++   +N  VI   DI      L+           
Sbjct: 1   MNIWKTLLLGMLVTGSAVSAPVELDKVAVIVNDGVILQSDIDTATKTLRANAKKSGQALP 60

Query: 70  --GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
               L +  V +LI++TL+ QE ++ G+  D   +N    + ARN   + ++ S+ +  +
Sbjct: 61  DADVLNEQIVDKLIIDTLQTQEADRIGVRIDDTRLNQAIEEIARNNNQTIDELSAAIASE 120

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
           G+    F++ +  +    +        +   L  E+    + +   T      R     +
Sbjct: 121 GVSYEEFREQIRKEMAASEARNALVRRRINILPAEVDNLAELLSKETNASVEYRIGHIQL 180

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
                Q++  ++ + K+  E   +          ++     +  G   ++ + ++   F 
Sbjct: 181 RFTDGQDKSALEAQAKELVEKLKQGADFSTMAYTYSKGPKALQGGDWGWMRKEEMPTIFA 240

Query: 248 NL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQ----NTPTKIEK 299
           +    +++ +   P+ +  G   + I D +    +        ++  +     +    ++
Sbjct: 241 DQIKMQNKGSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILLKPTVILSDEGAQR 300

Query: 300 HEAEYVKKLRS 310
              E+++++R+
Sbjct: 301 ELNEFIRRIRA 311



 Score = 78.9 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/270 (10%), Positives = 75/270 (27%), Gaps = 4/270 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++     LL  +       +I   +L     + +   ++        +        
Sbjct: 151 ILPAEVDNLAELLSKETNASVEYRIGHIQLRFTDGQDKSALEAQAKELVEKLKQGADFST 210

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                S    +      G         +    I      +        +   I   +   
Sbjct: 211 MAYTYSKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIEDVK 270

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC-NKLEKFASKI-HD 228
              TV    +      +    + +    Q+ + +                ++++      
Sbjct: 271 GLETVAVTEVNARHILLKPTVILSDEGAQRELNEFIRRIRAGEATFGELAQQYSQDPGSA 330

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKA 286
              G+  Y       P+F++ ++       + P+ T  G   + + D+R++   + A+K 
Sbjct: 331 AQDGELGYQTPDLYVPEFKHQVETLPVGTISEPFKTVHGWHIVEVLDRREVDRTDSAMKN 390

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                    K  +    ++++LR+ A +  
Sbjct: 391 KAYRILFNRKFNEEVGAWMQELRAGAFVEI 420


>gi|260878025|ref|ZP_05890380.1| chaperone protein SurA [Vibrio parahaemolyticus AN-5034]
 gi|308089886|gb|EFO39581.1| chaperone protein SurA [Vibrio parahaemolyticus AN-5034]
          Length = 427

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/310 (12%), Positives = 112/310 (36%), Gaps = 12/310 (3%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING----- 70
           +  +  ++   ++   +  +     ++   +N  VI   DI+  +  L+           
Sbjct: 1   MKIWKSILFTTLLSCGAVAAPVELDKVAVIVNDGVILQSDINTAMKTLQANARQSGKSLP 60

Query: 71  ---ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
               L++  V++LI++TL+ QE ++ G+  D N +N    + ARN   S E+ ++ +  +
Sbjct: 61  SASVLKEQVVEKLIIDTLQGQEADRIGVRIDDNRLNQAIAEIARNNNQSVEELAASVQAE 120

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
           G+    F++ +  +    +        +   L  E+ +   ++   T      +     +
Sbjct: 121 GLSYPEFREQIRKEIAASEARNALVRRRINILPAEVDSLADQLAKETNATVQYKIGHIQL 180

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
                Q++  V+ + K   +              ++     +  G   ++ + ++   F 
Sbjct: 181 RFTDGQDKSEVEAQAKALVKKLNDGADFTEMAYTYSKGPKALQGGDWGWMRKEEMPTIFA 240

Query: 248 NL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAE 303
           +    +++ +   P+ +  G   + I D +    +        ++  + T    ++    
Sbjct: 241 DQIKMQNKGSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDEGAKN 300

Query: 304 YVKKLRSNAI 313
            + +      
Sbjct: 301 QLNEFVRRIK 310



 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 50/140 (35%), Gaps = 3/140 (2%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLL 238
               +   P   L ++G   +  +     +           +++         G+  Y  
Sbjct: 281 NARHILIKPTVILSDEGAKNQLNEFVRRIKAGEATFAQLASQYSQDPGSAAQDGELGYQT 340

Query: 239 ESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKAYLSAQNTPTK 296
                P+F++ ++     + + P+ T  G   + + D+R +   + A+K          K
Sbjct: 341 PDLYVPEFKHQVETLPVGSISEPFKTVHGWHIVEVLDRRQVDRTDSAMKNKAYRILFNRK 400

Query: 297 IEKHEAEYVKKLRSNAIIHY 316
             +    ++++LR++A +  
Sbjct: 401 FNEEAGAWMQELRASAFVEI 420


>gi|253698853|ref|YP_003020042.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
 gi|251773703|gb|ACT16284.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
          Length = 317

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 92/295 (31%), Gaps = 13/295 (4%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN------GELEKIAVQELIVETLKK 87
            +    S I   +N E+IT  ++ K    ++ +           L   A+  L+   L +
Sbjct: 21  STAKPVSGIAAIVNDEIITTLELDKEYLQIQKEADKVPASDKSGLRGAALNRLVERKLIE 80

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           Q+I +  I      V        +   L+ E+    L  QG+    ++  L  Q     +
Sbjct: 81  QKIRELNINVSDEEVRLAIEDVKKQNNLTQENLEQALATQGMTFAQYRIQLKEQLERLRL 140

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ---NQGFVQKRIKD 204
           +  +   K    E E+    Q          +          +K          + R  +
Sbjct: 141 MSQEVRSKVQVGEREMREYYQANIAAYGGSEVFSARHIFFKVDKKGGAGELSKAEARANE 200

Query: 205 AEESRLRLPKDCNKLEKFASKIHD-VSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYV 262
                          ++++         G      ++D+       +        ++   
Sbjct: 201 VLAKARAGEDFAALAKQYSDDPAAAKDGGDLGTFKKADMLPEIGDTVAAMQPGEVSSVVR 260

Query: 263 TQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +  G+  I +  K+         +K  +       K ++  A++VK+LR++A I 
Sbjct: 261 SPSGLHIIKLEGKKQDAGRPFEEVKDSIEDTLYKKKSDERFAQWVKELRASAAIE 315


>gi|220935878|ref|YP_002514777.1| SurA domain protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997188|gb|ACL73790.1| SurA domain protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 443

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/315 (15%), Positives = 103/315 (32%), Gaps = 18/315 (5%)

Query: 15  LLTTYFVLIIFCIVPIVSYKS---WAMSSRIRTTINGEVITDGDISKRIALLKLQK---- 67
            L +   L +    P+         A    I   +  +VI   ++  R+  ++ Q     
Sbjct: 9   FLLSAMALTLALAWPLQGLAQRADDAPLDHIVALVEDDVIMHSELQNRLDTVRQQILSRG 68

Query: 68  ----INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
                +  L    ++ LI+E L+ Q+  ++GI  D  T+N    + AR   +S  +F   
Sbjct: 69  GRLPPDDVLIPQVLERLIIERLQLQQATRAGIRIDDITLNQTMERIARENSMSLPEFRDR 128

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
           L   GI    F++ +  +     + +     +    E EI            R+   R  
Sbjct: 129 LVADGIDFQVFREQIRDEMTIGQLRRRQVENRIQVSEQEIDDLIASESGAIDRDVEYRLS 188

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLES 240
              +P  +  N   +Q   + AE  R R              ++    +  G   +   +
Sbjct: 189 HILVPLPEGANAADIQAARERAEAIRKRAVAGENFSELALSESAGQQALEGGDLGWRAAA 248

Query: 241 DLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKRD---LGGEIALKAYLSAQNTPTK 296
            +   F   +    +   +    +  G   I + ++R             ++  Q T   
Sbjct: 249 QVPTLFARNVVLMREGEVSELIRSPSGFHLIKLQERRGGERAQITQTHARHILIQPTAIL 308

Query: 297 IEKHEAEYVKKLRSN 311
            ++   E +  LR+ 
Sbjct: 309 SQEDARERIAGLRNR 323



 Score = 75.5 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 87/282 (30%), Gaps = 17/282 (6%)

Query: 46  INGEV-ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           +   + +++ +I   IA       +G +++     L    +   E   +     +     
Sbjct: 157 VENRIQVSEQEIDDLIA-----SESGAIDRDVEYRLSHILVPLPEGANAADIQAARERAE 211

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
              + A      +E   S    Q   +     + A   +     +N  +++ G +   I 
Sbjct: 212 AIRKRAVAGENFSELALSESAGQQALEGGDLGWRAAAQVPTLFARNVVLMREGEVSELIR 271

Query: 165 ANKQKMKNITVREY--------LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
           +                             I    + +Q   ++RI       L      
Sbjct: 272 SPSGFHLIKLQERRGGERAQITQTHARHILIQPTAILSQEDARERIAGLRNRILMGNDFA 331

Query: 217 NKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICD 274
           +     +      +  G   +    DL PQF+ ++   + N  + P+++  G   + + D
Sbjct: 332 DLARAHSDDRGSAMRGGDLGWTDPGDLVPQFEEVMNALAPNTLSEPFLSPFGWHIVEVLD 391

Query: 275 KRD-LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +R        ++A         K E+    ++++LR  A + 
Sbjct: 392 RRTYDSSRQLMRAQAREIIRERKREEETELWLRRLRDEAYVE 433


>gi|254229741|ref|ZP_04923149.1| ppic-type ppiase domain protein [Vibrio sp. Ex25]
 gi|262392437|ref|YP_003284291.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio sp. Ex25]
 gi|151937708|gb|EDN56558.1| ppic-type ppiase domain protein [Vibrio sp. Ex25]
 gi|262336031|gb|ACY49826.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio sp. Ex25]
          Length = 427

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/310 (11%), Positives = 112/310 (36%), Gaps = 12/310 (3%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE---- 71
           +  +  ++   ++   +  +     ++   +N  VI   DI   +  L+           
Sbjct: 1   MKIWKSILFTTLLSCGAVAAPVEIDKVAVIVNDGVILQSDIETAMKTLQANARQSGKSLP 60

Query: 72  ----LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
               L++  V++LI++TL+ QE ++ G+  D N +N    + ARN   S E  ++ ++ +
Sbjct: 61  SASVLKEQVVEKLIIDTLQGQEADRIGVRIDDNRLNQAIAEIARNNEQSVEQLAASVESE 120

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
           G+    F++ +  +    +        +   L  E+ +  +++   T      +     +
Sbjct: 121 GLSYPEFREQIRKEIAASEARNALVRRRINILPAEVDSLAEQLSQETNATVQYKIGHIQL 180

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
             +  + +  V+   K   +              ++     +  G   ++ + ++   F 
Sbjct: 181 RFSDDKEKSAVEAEAKALAKKLNEGADFTEMAYTYSKGPKALQGGDWGWMRKEEMPTIFA 240

Query: 248 NL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAE 303
           +    +++ +   P+ +  G   + I D +    +        ++  + T    ++   +
Sbjct: 241 DQIKMQNKGSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDEGAKK 300

Query: 304 YVKKLRSNAI 313
            + +      
Sbjct: 301 QLNEFVRRIK 310



 Score = 78.9 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/270 (11%), Positives = 79/270 (29%), Gaps = 4/270 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++      L  +       KI   +L     K++   ++     +  +N       
Sbjct: 151 ILPAEVDSLAEQLSQETNATVQYKIGHIQLRFSDDKEKSAVEAEAKALAKKLNEGADFTE 210

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                S    +      G         +    I      +        +   I   +   
Sbjct: 211 MAYTYSKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIEDVK 270

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK-LEKFASKI-HD 228
              TV    +      I    + +    +K++ +             +   +++      
Sbjct: 271 GLETVAVTEVNARHILIKPTVILSDEGAKKQLNEFVRRIKAGEATFAQLATQYSQDPGSA 330

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKA 286
              G+  Y       P+F++ ++     + + P+ T  G   + + D+R +   + A+K 
Sbjct: 331 AQDGELGYQTPDLYVPEFKHQVETLPVGSISEPFKTVHGWHIVEVLDRRQVDRTDSAMKN 390

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                    K  +    ++++LR++A +  
Sbjct: 391 KAYRILFNRKFNEEAGAWMQELRASAFVEI 420


>gi|116748015|ref|YP_844702.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697079|gb|ABK16267.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 353

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 92/291 (31%), Gaps = 17/291 (5%)

Query: 43  RTTINGEVITDGDISKRIALLKLQK----------INGELEKIAVQELIVETLKKQEIEK 92
              +NG VIT  +        + Q              E++K  +  L+   + KQ+  K
Sbjct: 61  VAVVNGTVITRAEYESETKRFERQMAMSGQAPDGAQVAEMKKKVLDGLVGREVLKQQAAK 120

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
            G+  D   V+       +      E   +  +   + +   K           ++    
Sbjct: 121 LGVKVDPAEVDKEIATLKQRFPNEDEFKKALKNLN-LTEESLKAQFTQDLGIRKMIDEQV 179

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK---LQNQGFVQKRIKDAEESR 209
             K      E          +     ++R     I  +      ++   ++RI  A++  
Sbjct: 180 ASKITITPEETKKFYDGNPELFKTPEMVRASHVLIKVDPKAGDADKAKAKERITAAQKKV 239

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVE 268
                     ++ +        G   +     +   F+         + ++   TQ G  
Sbjct: 240 QAGEDFAKVAKEVSECPSAAKGGDLDFFQRGQMVGPFEQAAFALKVGSVSDIVETQFGYH 299

Query: 269 YIAICDKRDLGG--EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            I + DK++ G      +K  ++      ++ +  A+Y+++L++ A I  +
Sbjct: 300 VIKVTDKKEAGVMKYDEIKDRIAQHLKQDRVNQQLAKYIEELKAQAKIEIF 350


>gi|254447632|ref|ZP_05061098.1| chaperone SurA [gamma proteobacterium HTCC5015]
 gi|198262975|gb|EDY87254.1| chaperone SurA [gamma proteobacterium HTCC5015]
          Length = 442

 Score =  135 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 32/313 (10%), Positives = 106/313 (33%), Gaps = 14/313 (4%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI---- 68
           +  +    +++ F     ++     + +RI   ++ ++I + ++   ++ +K +      
Sbjct: 1   MMTMIARLLILFFLFATPLAQAEPQVLARIAAVVDTDIILEQEMLDELSRVKARIQASGQ 60

Query: 69  ----NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
               +  L++  ++ LIV+ ++ Q  ++ GI  D   +N    + A   G+S   F + +
Sbjct: 61  TPPPDEILKRQVLEHLIVKEVQMQAADRVGINVDDTFLNEQLQRIASENGMSLAQFKAKI 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           + +G+    +++ L  +     + +     +    E E+     +    +         +
Sbjct: 121 ESEGMDYVEYREMLREEMKIQQLRQRTVYDRVVVSEQEVDDYLAQNPVGSESVEYQLGHI 180

Query: 185 FSIPDNKL--QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
                     +     +K   +  E   +  +        +     +  G   +L +  +
Sbjct: 181 LVGTPEAATPEQVDTARKEADNLYEQIKQGARFSQLALSHSDGQRALDGGDLGWLPQGRV 240

Query: 243 HPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG---GEIALKAYLSAQNTPTKIE 298
              F + +    +   + P  +  G   + +   R       +     ++         +
Sbjct: 241 PSLFLEAIESLQKGQVSRPIRSPSGFHLVQLKGVRGDERRVIQQVRARHILLTPNAVLSD 300

Query: 299 KHEAEYVKKLRSN 311
           +   + + +LR  
Sbjct: 301 EQARQKIAELRRR 313



 Score = 83.6 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 14/126 (11%), Positives = 41/126 (32%), Gaps = 2/126 (1%)

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
            ++   QK  +                +  +        G   +    +  P F+ +++ 
Sbjct: 299 SDEQARQKIAELRRRIVEADESFAELAKAHSIDGSAAQGGDLGWAAPREYVPAFRQVVET 358

Query: 253 SQ-NNTTNPYVTQKGVEYIAICDKRD-LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
              N  + P+ +  G   + + ++R     +   +     +    K  + E  ++++LR 
Sbjct: 359 LPLNTLSEPFRSDFGWHIVEVLERRQYDETDEYRRGMARQELRKMKASEEEELWLRRLRD 418

Query: 311 NAIIHY 316
              + Y
Sbjct: 419 QTYVEY 424


>gi|156973131|ref|YP_001444038.1| hypothetical protein VIBHAR_00810 [Vibrio harveyi ATCC BAA-1116]
 gi|156524725|gb|ABU69811.1| hypothetical protein VIBHAR_00810 [Vibrio harveyi ATCC BAA-1116]
          Length = 427

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/310 (12%), Positives = 108/310 (34%), Gaps = 12/310 (3%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING----- 70
           +  +  L+   ++      +     ++   +N  VI   DI   +  L+           
Sbjct: 1   MKIWKSLLFTALLSCGVTAAPVELDKVAVIVNDGVILQSDIDTAMKTLQANARQSGKSLP 60

Query: 71  ---ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
               L+   V++LI++TL+ QE E+ G+  D N +N    + ARN   S E  ++ +  +
Sbjct: 61  SASVLKDQVVEKLIIDTLQGQEAERIGVRIDDNRLNQAIAEIARNNNQSVEQLAASVQAE 120

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
           G+  + F++ +  +    +        +   L  E+ +   ++   T      +     +
Sbjct: 121 GLSYSEFREQIRKEIAASEARNALVRRRINILPAEVDSLADQLAKETNATVQYKIGHIQL 180

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
             +  +++  V+       +              ++     +  G   ++ + ++   F 
Sbjct: 181 RFSDDKDKSEVEAEANALVKKLKDGADFSEMAYTYSKGPKALQGGDWGWMRKEEMPTIFA 240

Query: 248 NL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAE 303
           +    +++ +   P+ +  G   + I D +    +        ++  + T    +    +
Sbjct: 241 DQIKMQNKGSIIGPFRSGIGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDDGAKK 300

Query: 304 YVKKLRSNAI 313
            + +      
Sbjct: 301 ELNEFIRRIK 310



 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 50/140 (35%), Gaps = 3/140 (2%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLL 238
               +   P   L + G  ++  +     +           +++         G+  Y  
Sbjct: 281 NARHILIKPTVILSDDGAKKELNEFIRRIKAGEATFGQLATQYSQDPGSAAQNGELGYQT 340

Query: 239 ESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKAYLSAQNTPTK 296
                P+F++ ++     + + P+ T  G   + + D+R +   + A+K          K
Sbjct: 341 PDLYVPEFKHQVETLPVGSISAPFKTVHGWHIVEVLDRRQVDRTDSAMKNKAYRILFNRK 400

Query: 297 IEKHEAEYVKKLRSNAIIHY 316
             +    ++++LR++A +  
Sbjct: 401 FNEEAGAWMQELRASAFVEI 420


>gi|91790684|ref|YP_551636.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp.
           JS666]
 gi|122070654|sp|Q121Q4|SURA_POLSJ RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|91699909|gb|ABE46738.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp.
           JS666]
          Length = 473

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 97/292 (33%), Gaps = 18/292 (6%)

Query: 38  MSSRIRTTINGEVITDGDI--------SKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
            +  I   +N E IT+ ++         + I          EL    ++ LI +  + Q 
Sbjct: 66  QADFIVAVVNSEPITNSEVRTKLVRTEQQIIQQGSPLPPRRELVPQVLERLISDKAQLQL 125

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
              +G+  D N V       AR   +S ++    L   GI  + F+  L  + +   + +
Sbjct: 126 ARSAGMRVDDNAVEAAVQTVARQNQISVDELRRRLKADGIAYSQFESDLRDELLVSRLRQ 185

Query: 150 NDFMLKYGNLEMEIPANKQKMK---NITVREYLIRTVLFSIPDNKLQ-NQGFVQKRIKDA 205
            +  L+    E +I    ++ +    ++     +  +L ++P+N        +Q + +  
Sbjct: 186 REVDLRVTVTEQDIDQFLREQEGGTELSSLALNLAQILVAVPENATPGQVAALQAKAQQV 245

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQ 264
            +             +F+      + G           P F ++           P  + 
Sbjct: 246 MDKARGGADFAALANEFSDSPTRGTGGLMGLREADRYPPLFVESTKSLKVGGLAGPIRSG 305

Query: 265 KGVEYIAICDKRDLG-----GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            G   + + +KR  G            ++  + +P + E    E +  LR  
Sbjct: 306 AGFHILKVIEKRQAGMPGSVITQTHARHILLRLSPKQGETAATEKLAALRKR 357



 Score = 96.3 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 83/279 (29%), Gaps = 17/279 (6%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           +T+ DI +    L+ Q+   EL  +A+  L    +   E    G            +  A
Sbjct: 194 VTEQDIDQ---FLREQEGGTELSSLALN-LAQILVAVPENATPGQVAALQAKAQQVMDKA 249

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------FMLKYGNL 159
           R     A   + F D    G              P  V++                 G  
Sbjct: 250 RGGADFAALANEFSDSPTRGTGGLMGLREADRYPPLFVESTKSLKVGGLAGPIRSGAGFH 309

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
            +++   +Q     +V        +      K       +K     +             
Sbjct: 310 ILKVIEKRQAGMPGSVITQTHARHILLRLSPKQGETAATEKLAALRKRILAGQADFAALA 369

Query: 220 EKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL 278
            + +        G   +       P+F+ ++   + N  ++P V++ GV  I + ++R+ 
Sbjct: 370 RENSEDASAKQGGDLGWANPGMFVPEFEKVMNGLAPNQISDPLVSRFGVHLIQVLERREA 429

Query: 279 GGEIALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                 +  +        K E+    + +++R  A + Y
Sbjct: 430 QMSQRDQREMARNVLRGKKQEEAYVLWAQEVRGRAYVEY 468


>gi|68249060|ref|YP_248172.1| survival protein SurA-like protein [Haemophilus influenzae
           86-028NP]
 gi|68057259|gb|AAX87512.1| survival protein SurA homolog [Haemophilus influenzae 86-028NP]
          Length = 313

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 55/318 (17%), Positives = 110/318 (34%), Gaps = 20/318 (6%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAM-SSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
           +K+        +   +  V++ S A    R+  T++G  I +  +       +       
Sbjct: 1   MKMKKFILKSFLLATLGCVAFTSMAQAEERVVATVDGIPILESQV-------RANMGKKG 53

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
             + A+ ++I + L ++ I++SG+  D   ++      A   GL+   F   LD QGI  
Sbjct: 54  DRQSALDKIIDDLLVQKAIQESGVKIDPREIDRVVEDTAARNGLTYGQFLDALDYQGISL 113

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI---------PANKQKMKNITVREYLIRT 182
           N F+Q +A Q +   V              E+          A  Q        +     
Sbjct: 114 NTFRQQIANQMVMGAVRNKAIQESIDVTREEVVALGQKMLDEAKSQGTAQKVTGKEYEVR 173

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQY-LLES 240
            +    +  L +    ++  K   +         +   K++       + G   Y   E+
Sbjct: 174 HILLKLNPLLNDAQAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPET 233

Query: 241 DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEK 299
                 Q ++K  Q   + P+ T+ G   + +   RD              +   T+++ 
Sbjct: 234 YAPQFAQTVMKSKQGVISAPFKTEFGWHILEVTGVRDGDLTAEAYTQKAYERLVNTQLQD 293

Query: 300 HEAEYVKKLRSNAIIHYY 317
              ++VK LR  A I Y+
Sbjct: 294 ATNDWVKALRKRANIQYF 311


>gi|261380640|ref|ZP_05985213.1| putative cis-trans isomerase [Neisseria subflava NJ9703]
 gi|284796620|gb|EFC51967.1| putative cis-trans isomerase [Neisseria subflava NJ9703]
          Length = 329

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 86/284 (30%), Gaps = 17/284 (5%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKL------QKINGELEKIAVQELIVETLKKQEIEK 92
           S  I   ++ EVIT   +++ +A  +       Q    EL +  + ++I ++L  Q  ++
Sbjct: 52  SDGIAAVVDNEVITHRQVAQAVAQARQTMPKGTQMDANELRQQVLAQMINQSLILQAGKR 111

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I    + +      +      SA       D          + +  Q+I      +  
Sbjct: 112 RNIQATDSEIEAVIAHNPNIKNPSAAVRQDIADS------IIVEKVRQQAIMQ---NSRV 162

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
                   +E    +                   I  +        +  I+         
Sbjct: 163 SDSEVARYIEQAKQQGITLPEADPVRQYHAQHILIKADNDNAAVGAESTIRKIYSQARSG 222

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                   +++      + G   +  +  +   F+  + K      + P  TQ G   I 
Sbjct: 223 ADFGGLARQYSQDGSAGNGGDLGWFADGMMVAPFEEAVHKLKPGQISAPVRTQFGWHIIK 282

Query: 272 ICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           + D R+    E   +  +    +  K ++     +++L S++ +
Sbjct: 283 LNDVREAGTPEERQQNAVRQYLSQQKAQQATTNLLRELHSSSYV 326


>gi|90020386|ref|YP_526213.1| L-ribulokinase [Saccharophagus degradans 2-40]
 gi|121956457|sp|Q21MS8|SURA_SACD2 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|89949986|gb|ABD80001.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Saccharophagus
           degradans 2-40]
          Length = 430

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/315 (13%), Positives = 100/315 (31%), Gaps = 15/315 (4%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
            IK     F  I F      +        R+   ++   IT  ++  R+  ++++     
Sbjct: 3   IIKTTIATFTAIAFTGAASFTSAEVVPLDRVVAVVDNRAITQTELDSRVQDVQVRSQAAG 62

Query: 72  LE--------KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
           +         K  + +LI ETL+ +  ++ G+      VN       +N  ++ + F   
Sbjct: 63  MRLPEADILNKQIIDQLISETLQLEMADRYGVQVSDQEVNASIGNIIQNAQMTEQQFVQQ 122

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
           L  +G+  N F+  +  Q     + +     +    E E+    +               
Sbjct: 123 LASEGVSINEFRASIRRQLTMRSITEGLVSRRIRISEQEVDNFLKSADAQFWVSPDYHLG 182

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE---KFASKIHDVSIGKAQYLLES 240
              +      +   + +  + A     +L    N  E     ++    +  G   +   +
Sbjct: 183 HILVALPSSPSSEAIVEAEEKANALYEKLKAGANFAEVAIAESNGPSALQGGDLGWRKSA 242

Query: 241 DLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTK 296
           +L   F + L   +  + T P  +Q G   I + + R             ++  + +   
Sbjct: 243 ELPTLFAELLPSLNNGDVTKPTRSQAGFHIIKLYESRGGQKQIVNQTRARHILVKTSEIL 302

Query: 297 IEKHEAEYVKKLRSN 311
            +      +K +R  
Sbjct: 303 NDAKAEAKLKDIRQQ 317



 Score = 91.7 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 49/147 (33%), Gaps = 3/147 (2%)

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSI 231
                   R     +  +++ N    + ++KD  +  L         +  +  I   +S 
Sbjct: 282 QKQIVNQTRARHILVKTSEILNDAKAEAKLKDIRQQILDGADFAELAKTHSEDIGSRMSG 341

Query: 232 GKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL-KAYLS 289
           G   +       P F+  + +  +   + P+ ++ G   + + ++R+        +    
Sbjct: 342 GDLGWATPGTFVPAFEKTMAETKEGEISQPFKSRFGWHIMKVEERREEDMTQEALRQKAR 401

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                 + E     ++++LR  A I  
Sbjct: 402 NMIMSRRFEDETQIWLQELRDEAFIDI 428


>gi|84393693|ref|ZP_00992443.1| parvulin-like peptidyl-prolyl isomerase [Vibrio splendidus 12B01]
 gi|84375692|gb|EAP92589.1| parvulin-like peptidyl-prolyl isomerase [Vibrio splendidus 12B01]
          Length = 431

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/311 (12%), Positives = 110/311 (35%), Gaps = 12/311 (3%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--- 69
           + L     + I       VSY +      ++  +N  VI   DI   +  L+        
Sbjct: 1   MTLWKRTLIAIAAACTVSVSYAAPVELDSVKVIVNEGVILQSDIDASMKTLRANAKKSGQ 60

Query: 70  -----GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L +  +++LI++T++ QE E+ G+  D   ++      A++   + E  ++ +
Sbjct: 61  TLPSQDVLNEQVLEKLIIDTIQTQEAERIGVRIDDARLDQAIEGIAKDNNQTVEQLTASV 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            ++G+  N F++ +  +    +        +   L  E+      +   T      +   
Sbjct: 121 AEEGLSYNAFREQVRKEIAASEARNALVRRRINILPAEVDNLADILAQETNATVQYKIGH 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             +  N  Q +  ++ + K+  E              ++     +  G   ++ + ++  
Sbjct: 181 IQLRFNDDQTKEELEAQAKEVVEELNSGKDFSTMAYTYSKGPKALQGGDWGWMRKEEMPT 240

Query: 245 QFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKH 300
            F +    +++ +   P+ +  G   + I D +    +        ++  + T    +  
Sbjct: 241 IFADQIKMQNKGSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDYG 300

Query: 301 EAEYVKKLRSN 311
             E ++++   
Sbjct: 301 AKEQLEEITRR 311



 Score = 79.7 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 88/276 (31%), Gaps = 14/276 (5%)

Query: 44  TTING-EVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             ++    I   + +  +            +    +EL  +  +  E   SG  F +   
Sbjct: 157 AEVDNLADILAQETNATVQYKIGHIQLRFNDDQTKEELEAQAKEVVEELNSGKDFSTMAY 216

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
            Y     A   G    D+     ++       +  +  +       ++        +E  
Sbjct: 217 TYSKGPKALQGG----DWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIEDV 272

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                  +  +  R  LI+  +        +    + +R+   E             +++
Sbjct: 273 KGLETVAVTEVNARHILIKPTVILSDYGAKEQLEEITRRVNAGEA------SFGELAQQY 326

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG- 279
           +      V  G+  Y       P+F++ ++   +   + P+ T  G   + + D+R++  
Sbjct: 327 SQDPGSAVQDGELGYQTPDLYVPEFKHQVETLPEGKISAPFKTVHGWHIVEVLDRREVDR 386

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            + ALK          K  +    +++++R++A + 
Sbjct: 387 TDSALKNKAYQILFNRKFNEEAGAWLQEVRASAFVE 422


>gi|148977503|ref|ZP_01814092.1| parvulin-like peptidyl-prolyl isomerase [Vibrionales bacterium
           SWAT-3]
 gi|145963298|gb|EDK28564.1| parvulin-like peptidyl-prolyl isomerase [Vibrionales bacterium
           SWAT-3]
          Length = 431

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 109/311 (35%), Gaps = 12/311 (3%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--- 69
           + L     + I        S+        +R  +N  VI   DI   +  L+        
Sbjct: 1   MTLWKRTLIAIAAACTVSTSFADPVELDSVRVIVNEGVILQSDIDTSMKTLRANAKKSGQ 60

Query: 70  -----GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L++  +++LI++T++ QE E+ G+  D   ++      A++   + E  ++ +
Sbjct: 61  TLPSQDVLDEQVLEKLIIDTIQTQEAERIGVRIDDARLDQAIEGIAKDNNQTVEQLTASV 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            ++G+  N F++ +  +    +        +   L  E+      +   T      +   
Sbjct: 121 AEEGLSYNAFREQVRKEIAASEARNALVRRRINILPAEVDNLADILAQETNATVQYKIGH 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             +  N  Q +  ++ + K+  E              ++     +  G   ++ + ++  
Sbjct: 181 IQLRFNDDQTKEELEAQAKELVEELNSGKDFSTMAYTYSKGPKALQGGDWGWMRKEEMPT 240

Query: 245 QFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKH 300
            F +    +++ +   P+ +  G   + I D +    +        ++  + T    +  
Sbjct: 241 IFADQIKMQNKGSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDDG 300

Query: 301 EAEYVKKLRSN 311
             E ++++   
Sbjct: 301 AKEQLEEITRR 311



 Score = 80.9 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/276 (10%), Positives = 87/276 (31%), Gaps = 14/276 (5%)

Query: 44  TTING-EVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             ++    I   + +  +            +    +EL  +  +  E   SG  F +   
Sbjct: 157 AEVDNLADILAQETNATVQYKIGHIQLRFNDDQTKEELEAQAKELVEELNSGKDFSTMAY 216

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
            Y     A   G    D+     ++       +  +  +       ++        +E  
Sbjct: 217 TYSKGPKALQGG----DWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIE-- 270

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                 +   +T        +  ++  +    +  +++  +                +++
Sbjct: 271 -DVKGLETVAVTEVNARHILIKPTVILSDDGAKEQLEEITRRVNAGEASFGDM---AQQY 326

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG- 279
           +      V  G+  Y       P+F++ ++   +   + P+ T  G   + + D+R++  
Sbjct: 327 SQDPGSAVQDGELGYQTPDLYVPEFKHQVETLPEGKISAPFKTVHGWHIVEVLDRREVDR 386

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            + ALK          K  +    +++++R++A + 
Sbjct: 387 TDSALKNKAYQILFNRKFNEEAGAWLQEVRASAFVE 422


>gi|37678664|ref|NP_933273.1| parvulin-like peptidyl-prolyl isomerase [Vibrio vulnificus YJ016]
 gi|37197404|dbj|BAC93244.1| parvulin-like peptidyl-prolyl isomerase [Vibrio vulnificus YJ016]
          Length = 443

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/312 (12%), Positives = 115/312 (36%), Gaps = 16/312 (5%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN----- 69
            +  +  L++  +V   +  +     ++   +N  VI   DI      L+          
Sbjct: 15  KMNIWKTLLLGMLVTGSAVSAPVELDKVAVIVNDGVILQSDIDTATKTLRANAKKSGQAL 74

Query: 70  ---GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
                L +  V +LI++TL+ QE ++ G+  D   +N    + ARN   + ++ S+ +  
Sbjct: 75  PDADVLNEQIVDKLIIDTLQTQEADRIGVRIDDTRLNQAIEEIARNNNQTIDELSAAIAS 134

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
           +G+    F++ +  +    +        +   L  E+    + +   T      R     
Sbjct: 135 EGVSYEEFREQIRKEMAASEARNALVRRRINILPAEVDNLAELLSKETNASVEYRIGHIQ 194

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
           +     Q++  ++ + K+  E   +          ++     +  G   ++ + ++   F
Sbjct: 195 LRFTDGQDKSALEAQAKELVEKLKQGADFSTMAYTYSKGPKALQGGDWGWMRKEEMPTIF 254

Query: 247 QNL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQ----NTPTKIE 298
            +    +++ +   P+ +  G   + I D +    +        ++  +     +    +
Sbjct: 255 ADQIKMQNKGSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILLKPTVILSDEGAQ 314

Query: 299 KHEAEYVKKLRS 310
           +   E+++++R+
Sbjct: 315 RELNEFIRRIRA 326



 Score = 78.2 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/270 (10%), Positives = 75/270 (27%), Gaps = 4/270 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++     LL  +       +I   +L     + +   ++        +        
Sbjct: 166 ILPAEVDNLAELLSKETNASVEYRIGHIQLRFTDGQDKSALEAQAKELVEKLKQGADFST 225

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                S    +      G         +    I      +        +   I   +   
Sbjct: 226 MAYTYSKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIEDVK 285

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC-NKLEKFASKI-HD 228
              TV    +      +    + +    Q+ + +                ++++      
Sbjct: 286 GLETVAVTEVNARHILLKPTVILSDEGAQRELNEFIRRIRAGEATFGELAQQYSQDPGSA 345

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKA 286
              G+  Y       P+F++ ++       + P+ T  G   + + D+R++   + A+K 
Sbjct: 346 AQDGELGYQTPDLYVPEFKHQVETLPVGTISEPFKTVHGWHIVEVLDRREVDRTDSAMKN 405

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                    K  +    ++++LR+ A +  
Sbjct: 406 KAYRILFNRKFNEEVGAWMQELRAGAFVEI 435


>gi|77917707|ref|YP_355522.1| parvulin-like peptidyl-prolyl isomerase [Pelobacter carbinolicus
           DSM 2380]
 gi|77543790|gb|ABA87352.1| parvulin-like peptidyl-prolyl isomerase [Pelobacter carbinolicus
           DSM 2380]
          Length = 316

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/313 (17%), Positives = 105/313 (33%), Gaps = 14/313 (4%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------- 67
             Y +L I  ++   S  S    SRI   +N ++IT   + + I  +   +         
Sbjct: 1   MKYLILSIALLMLATSPLSAETISRIAAIVNQDIITTAQLDREIDKMLSAEAQETGITPV 60

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
              EL    + +LI +TL  Q IEK G+      V            ++ E     L  Q
Sbjct: 61  QREELRHKMLDKLIEDTLLNQRIEKLGLHVSDEAVEQAINDVQAQNNITREQLKQALVAQ 120

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
           GI  + +++ L  Q +   ++  +   K      E+    +   +    +  +R    + 
Sbjct: 121 GINFDDYRERLRQQLLNFQLIGREIQSKVEVTNTEMRDYYRSHLDDYRNDPYLRLSRITF 180

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF--ASKIHDVSIGKAQYLLESDLHPQ 245
                     +      A ++  +L +  + LE     +    V  G    + E  L   
Sbjct: 181 RLPPGNTPADIAAMRAKAADALQQLRRGKDFLEVLMQNAATSGVDGGDMGKITEGSLSES 240

Query: 246 F-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEA 302
           F + +   S    +    T +G   + + ++          +K  +S +    K      
Sbjct: 241 FNRAISGLSVGQVSEIIETPEGFHLLRLDERNPGDTQTFETVKEQISRKLMEDKRAAALT 300

Query: 303 EYVKKLRSNAIIH 315
           E+ + LR  A I 
Sbjct: 301 EWTENLRKEADIE 313


>gi|71909270|ref|YP_286857.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas
           aromatica RCB]
 gi|122070644|sp|Q479U4|SURA_DECAR RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|71848891|gb|AAZ48387.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas
           aromatica RCB]
          Length = 438

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/324 (13%), Positives = 107/324 (33%), Gaps = 19/324 (5%)

Query: 6   FTSLSDFIK-LLTTYFVLIIFCIVPIVSYKS-WAMSSRIRTTINGEVITDGDISKRIALL 63
             +++ +I+ L+     L      P+ +       + RI   +  +VIT  ++  R+   
Sbjct: 1   MKTMNPYIRHLILLICCLGGMLAQPLSAAPQDPVEADRIVAVVGSDVITYFELRTRLTAA 60

Query: 64  KLQKING--------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
             Q             LE+  ++ LI+E  + Q   ++G+  D   ++    + A    +
Sbjct: 61  LKQLQKQGTPLPPQDVLERQMLERLIMERAQLQYGRETGMKIDDTQLDLAIGRIAAGNKM 120

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
           +   F + L+K G+    F++ +  + +   + + +   K    E EI            
Sbjct: 121 TVPQFRAALEKDGVQYAQFREEIRNEMVTVRLREREVDSKLVISEGEIDNYLANQTATGS 180

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL---EKFASKIHDVSIG 232
            E      +             +QK  +  E++  R     N       F+     +  G
Sbjct: 181 EEEYQLAHILLRAPE-SATPEQLQKLRQRGEQALKRARAGENFAQLTAAFSDAPDALQGG 239

Query: 233 KAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAY 287
              +   + L   + +   +      ++   +  G   + +  KR        +     +
Sbjct: 240 DLGWRPLARLPALYAEAGSRLQSGEVSDLLRSSAGFHIVKLVSKRGGSAPASVQQTHARH 299

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSN 311
           +  +++    E      ++ +R  
Sbjct: 300 ILIRSSEVLSEAEATRKLEAVRER 323



 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 14/140 (10%), Positives = 49/140 (35%), Gaps = 2/140 (1%)

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
                   I  +++ ++    ++++   E          +   ++        G+  +L 
Sbjct: 294 QTHARHILIRSSEVLSEAEATRKLEAVRERIANGVDFAEQARLYSQDGSAAKGGELGWLN 353

Query: 239 ESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL-SAQNTPTK 296
             D  P+F+  +     N  +    +  G+  I + ++R+       +  +        K
Sbjct: 354 PGDTVPEFERAMDALKINEVSQVVQSPFGMHLIQVLERRERDVSAERQRAVARQALRERK 413

Query: 297 IEKHEAEYVKKLRSNAIIHY 316
           +++   +++++LR    +  
Sbjct: 414 LDEAYQDWLRQLRDRTYVEN 433


>gi|291612516|ref|YP_003522673.1| SurA domain protein [Sideroxydans lithotrophicus ES-1]
 gi|291582628|gb|ADE10286.1| SurA domain protein [Sideroxydans lithotrophicus ES-1]
          Length = 433

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/317 (13%), Positives = 111/317 (35%), Gaps = 17/317 (5%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE-- 71
           K+   + ++         S K      RI   +N +VIT  ++  R+A +       +  
Sbjct: 5   KIFALFLIVFATVASAAESQKQATSLDRIDVIVNDDVITHRELENRVASVTKMLQRQKTA 64

Query: 72  ------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA-EDFSSFL 124
                 LE+  ++ +I E L  Q  ++SG+  D   ++   ++ A+         F + L
Sbjct: 65  LPEKSILERQVLERMITEMLLAQYAKESGLRIDDGQLDKTILRIAQQNKFPDVAAFRAKL 124

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            + G   N F++ +  + I   + + +   K    E +I        +   +   ++   
Sbjct: 125 TRDGTDYNEFREEIRNEIIAVRLREREVDSKLVISENDIDNYLNNQAHQEGKGEELQLSH 184

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK---FASKIHDVSIGKAQYLLESD 241
             +   +      +Q     AE++  +L       +    ++     +  G+  +     
Sbjct: 185 ILVVVPEQATADKIQSYRDRAEQALAKLRAGAPFAQVAAGYSDAQDALKGGELGWRPADR 244

Query: 242 LHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTK 296
           L P F + L K    + ++   +  G   I + D+R     +        ++  + +   
Sbjct: 245 LPPLFAEALQKMKPGDLSDVLRSPSGFHIIKLLDRRSNDAPVVITQTHARHILIKTSELV 304

Query: 297 IEKHEAEYVKKLRSNAI 313
            +      +++++    
Sbjct: 305 TDSEAKSRLQEIKQRID 321



 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 90/291 (30%), Gaps = 15/291 (5%)

Query: 40  SRIRTT------INGE-VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEK 92
           + I         ++ + VI++ DI   +     Q+  GE  +++   L+V   +    + 
Sbjct: 140 NEIIAVRLREREVDSKLVISENDIDNYLNNQAHQEGKGEELQLS-HILVVVPEQATADKI 198

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
                 +          A    ++A    +    +G                  + K   
Sbjct: 199 QSYRDRAEQALAKLRAGAPFAQVAAGYSDAQDALKGGELGWRPADRLPPLFAEALQKMKP 258

Query: 153 ML-----KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
                  +  +    I    ++  +  V           I  ++L      + R+++ ++
Sbjct: 259 GDLSDVLRSPSGFHIIKLLDRRSNDAPVVITQTHARHILIKTSELVTDSEAKSRLQEIKQ 318

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKG 266
              +      +   ++        G   +L   +  P+F++ +        +    T  G
Sbjct: 319 RIDKGASFAEQARLYSEDGSAPQGGDLGWLSPGETVPEFESAMNALKVGQVSGLVQTGFG 378

Query: 267 VEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
              I + ++R+    +  K           K ++   +++++LR  A + Y
Sbjct: 379 WHLIQVLERRNTDVSVEQKRQRARNAIRTVKSDEAFQDWLRQLRDRAFVEY 429


>gi|39936127|ref|NP_948403.1| hypothetical protein RPA3064 [Rhodopseudomonas palustris CGA009]
 gi|192291845|ref|YP_001992450.1| SurA domain [Rhodopseudomonas palustris TIE-1]
 gi|39649981|emb|CAE28505.1| conserved unknown protein [Rhodopseudomonas palustris CGA009]
 gi|192285594|gb|ACF01975.1| SurA domain [Rhodopseudomonas palustris TIE-1]
          Length = 308

 Score =  134 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/285 (20%), Positives = 118/285 (41%), Gaps = 2/285 (0%)

Query: 33  YKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEK 92
             +   +  +   +NGE IT+ DI +R  L ++     +  +  +++LI E +K +E +K
Sbjct: 24  GTTQGQAQSVVVMVNGEPITNFDIDQRSKLNRMS-HKADSRQQVLEDLIDEKVKIKEAKK 82

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
            G+    + ++  F   A    +S    ++ L  QGI  +  K  +  + +W  +V+  F
Sbjct: 83  YGVNPSDSDIDSSFSTMASRMRMSTAQMTNMLAAQGIRPDTLKSRIRAEMVWASLVRGRF 142

Query: 153 MLKYGNLEMEIPAN-KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                  E E+ A  K       V  +  +     +  ++      +  R K+AE+ R R
Sbjct: 143 KDSLQVSEREVQAQLKGGDDTKAVESFEYQLRPVVMIVSRGSVSESLDARRKEAEQLRGR 202

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIA 271
           +         F +  +    G              + L K    + T P VT++G+E +A
Sbjct: 203 ISSCAEADRVFKAMPNAAIRGIVIKTSADLPPALREILDKTPVGHLTPPEVTKQGIEMVA 262

Query: 272 ICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +C+++    +   K  +  +    K +    EY++++R  A+I Y
Sbjct: 263 LCERKQSTADTPRKREIREKLFGEKFQAKSKEYLQEVRKAAMIEY 307


>gi|225076364|ref|ZP_03719563.1| hypothetical protein NEIFLAOT_01408 [Neisseria flavescens
           NRL30031/H210]
 gi|224952307|gb|EEG33516.1| hypothetical protein NEIFLAOT_01408 [Neisseria flavescens
           NRL30031/H210]
          Length = 329

 Score =  134 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 86/284 (30%), Gaps = 17/284 (5%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKL------QKINGELEKIAVQELIVETLKKQEIEK 92
           S  I   ++ EVIT   +++ +A  +       Q    EL +  + ++I ++L  Q  ++
Sbjct: 52  SDGIAAVVDNEVITHRQVAQAVAQARQTMPKGTQMDANELRQQVLAQMINQSLILQAGKR 111

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I    + +      +      SA       D          + +  Q+I      +  
Sbjct: 112 RNIQATDSEIEAVIAHNPNIKNPSAAVRQDIADS------IIVEKVRQQAIMQ---NSRV 162

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
                   +E    +                   I  +        +  I+         
Sbjct: 163 SDSEVARYIEQAKQQGVTLPEADPVRQYHAQHILIKADNDNAAVGAESTIRKIYTQARSG 222

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                   +++      + G   +  +  +   F+  + K      + P  TQ G   I 
Sbjct: 223 ADFGGLARQYSQDSSAGNGGDLGWFADGMMVAPFEEAVHKLKPGQISAPVRTQFGWHIIK 282

Query: 272 ICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           + D R+    E   +  +    +  K ++     +++L S++ +
Sbjct: 283 LNDVREAGTPEERQQNAVRQYLSQQKAQQATTNLLRELHSSSYV 326


>gi|153834210|ref|ZP_01986877.1| chaperone SurA [Vibrio harveyi HY01]
 gi|148869398|gb|EDL68404.1| chaperone SurA [Vibrio harveyi HY01]
          Length = 427

 Score =  134 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/310 (12%), Positives = 108/310 (34%), Gaps = 12/310 (3%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING----- 70
           +  +  L+   ++      +     ++   +N  VI   DI   +  L+           
Sbjct: 1   MKIWKSLLFTTLLSCGVTAAPVELDKVAVIVNDGVILQSDIDTAMKTLQANARQSGKSLP 60

Query: 71  ---ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
               L+   V++LI++TL+ QE E+ G+  D N +N    + ARN   S E  ++ +  +
Sbjct: 61  SASVLKDQVVEKLIIDTLQGQEAERIGVRIDDNRLNQAIAEIARNNNQSVEQLAASVQAE 120

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
           G+  + F++ +  +    +        +   L  E+ +   ++   T      +     +
Sbjct: 121 GLSYSEFREQIRKEIAASEARNALVRRRINILPAEVDSLADQLAKETNATVQYKIGHIQL 180

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
             +  +++  V+       +              ++     +  G   ++ + ++   F 
Sbjct: 181 RFSDDKDKSEVEAEANALVQKLKDGADFSEMAYTYSKGPKALQGGDWGWMRKEEMPTIFA 240

Query: 248 NL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAE 303
           +    +++ +   P+ +  G   + I D +    +        ++  + T    +    +
Sbjct: 241 DQIKMQNKGSIIGPFRSGIGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDDGAKK 300

Query: 304 YVKKLRSNAI 313
            + +      
Sbjct: 301 ELNEFIRRIK 310



 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 50/140 (35%), Gaps = 3/140 (2%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLL 238
               +   P   L + G  ++  +     +           +++         G+  Y  
Sbjct: 281 NARHILIKPTVILSDDGAKKELNEFIRRIKAGEATFGQLATQYSQDPGSAAQNGELGYQT 340

Query: 239 ESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKAYLSAQNTPTK 296
                P+F++ ++     + + P+ T  G   + + D+R +   + A+K          K
Sbjct: 341 PDLYVPEFKHQVETLPVGSISAPFKTVHGWHIVEVLDRRQVDRTDSAMKNKAYRILFNRK 400

Query: 297 IEKHEAEYVKKLRSNAIIHY 316
             +    ++++LR++A +  
Sbjct: 401 FNEEAGAWMQELRASAFVEI 420


>gi|330505263|ref|YP_004382132.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina NK-01]
 gi|328919549|gb|AEB60380.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina NK-01]
          Length = 432

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 96/287 (33%), Gaps = 15/287 (5%)

Query: 40  SRIRTTINGEVITDGDISKRIALLK--------LQKINGELEKIAVQELIVETLKKQEIE 91
            R+   ++ +V+    +  R+  ++               L +  ++ LI+E ++ Q  +
Sbjct: 33  DRVVAIVDNDVVMQSQLDARLREVQQTIDKRGGALPPEHVLSQQVLERLIIENIQLQIGD 92

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
           +SGI      +N      A+  G+S E F   L + G+     +  +  + I   V +  
Sbjct: 93  RSGIRITDEELNQAMGTIAQRNGMSLEQFRDALARDGLSYADARDQVRREMIISRVRQRR 152

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIR---TVLFSIPDNKLQNQGFVQKRIKDAEES 208
              +    + E+                 R    ++               ++ ++  + 
Sbjct: 153 VAERIQVTDQEVQNFLASDLGKMQLSEEFRLANILIPVSEGASSSEIQAADRQAQELYQQ 212

Query: 209 RLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGV 267
             +           ++  + +  G+  +     L P F +++ + +    T P  T  G 
Sbjct: 213 LQQGADFGQLAVSRSASENALEGGEMGWRKAGQLPPPFDSMISQLNPGEATEPVRTPGGF 272

Query: 268 EYIAICDKRDLGG---EIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             + + +KR       +     ++  + +  + E+     V++L   
Sbjct: 273 IILKLIEKRGGDTQVRDEVHVRHILIKPSEIRSEEETRRLVERLYQR 319



 Score = 89.3 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 12/138 (8%), Positives = 52/138 (37%), Gaps = 3/138 (2%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
                 I  ++++++   ++ ++   +  +         + F+      ++ G   ++  
Sbjct: 292 HVRHILIKPSEIRSEEETRRLVERLYQRIVDGEDFAELAKSFSEDPGSALNGGDLNWIDP 351

Query: 240 SDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-YLSAQNTPTKI 297
           + L P+F+ ++  +     + P+ +  G   + +  +R        +    +      K 
Sbjct: 352 NALVPEFREVMNNTASGELSKPFKSPYGWHVLQVMGRRATDSSAQFREQQAANLLRNRKY 411

Query: 298 EKHEAEYVKKLRSNAIIH 315
           ++    +++++R  A + 
Sbjct: 412 DEELQAWLRQIRDEAYVE 429


>gi|39997524|ref|NP_953475.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Geobacter sulfurreducens PCA]
 gi|39984415|gb|AAR35802.1| PPIC-type PPIASE domain protein [Geobacter sulfurreducens PCA]
          Length = 351

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 91/289 (31%), Gaps = 16/289 (5%)

Query: 42  IRTTINGEVITDGDISKRIALLKLQKI---------NGELEKIAVQELIVETLKKQEIEK 92
           +   +NG  IT  ++ +   +L  Q             ++E+ AV +LI + L  Q   K
Sbjct: 61  VVVKVNGVAITRAEVDRAKKVLMSQNRMTQPVTPDIAQKVEEAAVSQLIAKELLYQAGRK 120

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      +     Q         E   +      + +   + +     +  ++++ D 
Sbjct: 121 QEIKDLDKQIQERVSQSKARFPSQEEYLKTL-KSMDMTEKDVETFAREDLVINNLIEKDV 179

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR- 211
           + K    + E         +   R+  ++     I      +    +K  + AE    + 
Sbjct: 180 VAKTTVSDEEAKKFYNDNIDKFKRDETVKASHILIKVEPNASADDKKKAKEKAEAILKQV 239

Query: 212 --LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVE 268
                     +K +        G   +  +  + P F+           ++   TQ G  
Sbjct: 240 KGGADFAEVAKKESGCPSAPQGGDLGFFGKGQMVPPFEKAAFAMKPGEVSDVVETQFGYH 299

Query: 269 YIAICDKRDLGG--EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            I + DKR          K  +       K+++   EYV+ L+  A I 
Sbjct: 300 IIKLTDKRPAETVKFEETKDRIVQFLKQQKVQEGINEYVENLKKAAKIE 348


>gi|229512625|ref|ZP_04402094.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae TMA 21]
 gi|229350302|gb|EEO15253.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae TMA 21]
          Length = 431

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 35/313 (11%), Positives = 108/313 (34%), Gaps = 12/313 (3%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +KL     + ++  +    ++        +   +N  VI   D+   +  +K      + 
Sbjct: 1   MKLWKPTLISVLSALTLFNAHAEPKQLDSVAVIVNSGVILQSDVDSALKTIKANAKQNKQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L +  +++LI++TL++QE ++ G+  D N +N    + A+N   + E   + +
Sbjct: 61  PLPQETVLREQVLEKLIIDTLQQQEADRIGVKIDDNRLNEAIKEIAKNNQQTQEQLIASV 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            ++G+    F++ +  +    D        +   L  E+    + +   T      +   
Sbjct: 121 AQEGLTYPEFREQVRKEMAASDARNALVRRRINILPAEVDTLAELLTQETDATVQYKISH 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             +  +  Q++   +                      ++     +  G   ++ + ++  
Sbjct: 181 IQLRVDDGQDKSAAETLANKLVNDLRNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMPT 240

Query: 245 QFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKH 300
            F +    +++ +   P+ +  G   + I D +    +        ++  + T    ++ 
Sbjct: 241 IFADQIKMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTIILSDEG 300

Query: 301 EAEYVKKLRSNAI 313
             + + +      
Sbjct: 301 AQKQLNEFVQRIK 313



 Score = 82.8 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 82/269 (30%), Gaps = 4/269 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++     LL  +       KI+  +L V+  + +   ++      N +        
Sbjct: 154 ILPAEVDTLAELLTQETDATVQYKISHIQLRVDDGQDKSAAETLANKLVNDLRNGADFAQ 213

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                S    +      G         +    I      +        +   I       
Sbjct: 214 MAYAYSKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIDDVK 273

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKI-HD 228
              TV    +      I    + +    QK++ +  +             ++++      
Sbjct: 274 GLETVAVTEVNARHILIKPTIILSDEGAQKQLNEFVQRIKNGEVTFAELAQQYSQDPGSA 333

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKA 286
              G+  Y       P+F++ ++       + P+ T  G   + + D+R++   + ALK 
Sbjct: 334 AQKGELGYQTPDLYVPEFKHQIETLPVGQISEPFKTVHGWHIVEVLDRREVDRTDSALKN 393

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                    K  +  + ++++LR++A + 
Sbjct: 394 KAYRILFNRKFNEEASAWLQELRASAFVE 422


>gi|241759093|ref|ZP_04757204.1| peptidyl-prolyl cis-trans isomerase [Neisseria flavescens SK114]
 gi|241320695|gb|EER56948.1| peptidyl-prolyl cis-trans isomerase [Neisseria flavescens SK114]
          Length = 329

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 86/284 (30%), Gaps = 17/284 (5%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKL------QKINGELEKIAVQELIVETLKKQEIEK 92
           S  I   ++ EVIT   +++ +A  +       Q    EL +  + ++I ++L  Q  ++
Sbjct: 52  SDGIAAVVDNEVITHRQVAQAVAQARQTMPKGTQMDANELRQQVLAQMINQSLILQAGKR 111

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I    + +      +      SA       D          + +  Q+I      +  
Sbjct: 112 RNIQATDSEIEAVIAHNPNIKNPSAAVRQDIADS------IIVEKVRQQAIMQ---NSRV 162

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
                   +E    +                   I  +        +  I+         
Sbjct: 163 SDSEVARYIEQAKQQGVTLPEADPVRQYHAQHILIKADNDNAAVGAESTIRKIYSQARSG 222

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                   +++      + G   +  +  +   F+  + K      + P  TQ G   I 
Sbjct: 223 ADFGGLARQYSQDSSAGNGGDLGWFADGMMVAPFEEAVHKLKPGQISAPVRTQFGWHIIK 282

Query: 272 ICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           + D R+    E   +  +    +  K ++     +++L S++ +
Sbjct: 283 LNDVREAGTPEERQQNAVRQYLSQQKAQQATTNLLRELHSSSYV 326


>gi|118579840|ref|YP_901090.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter
           propionicus DSM 2379]
 gi|118502550|gb|ABK99032.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter
           propionicus DSM 2379]
          Length = 352

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 92/298 (30%), Gaps = 15/298 (5%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL--------EKIAVQELIVETL 85
            S      +   +NG+ +   ++ +    L   + N ++        +K+A+ +L    L
Sbjct: 54  ASAQQQKDVVARVNGKPVYARELERVKKALLAGRPNQQIPSEHQKEFDKMALNQLTSAEL 113

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
             Q  EK         V     Q       + E   +     G+ ++  ++Y    ++  
Sbjct: 114 LYQAGEKLDTKDIDKQVEAKMSQGKARFATTEEFQKAI-AGLGMNESDLREYTRRDAVIA 172

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
           + V+  F  K    + E      + ++   +   +R     I  +   +    +K  + A
Sbjct: 173 NFVQQTFASKVTVSDEESRKFYDENQDKFKQSESVRASHILIGVDPKADPEIRKKAREKA 232

Query: 206 EESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPY 261
           E+ R              + ++       G   +     + P F+       Q   ++  
Sbjct: 233 EKLRKELAGGADFATLARENSTCPSSQQGGDLGFFPRGQMVPPFEQAAFSLKQGEVSDVV 292

Query: 262 VTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            TQ G   I     +  +       KA +       K+      Y+   R  + I  Y
Sbjct: 293 ETQFGYHIIKQMGHKNAETVSYADAKARIVDYLKNQKVNSAITAYLDDARKTSKIETY 350


>gi|91227110|ref|ZP_01261594.1| survival protein SurA [Vibrio alginolyticus 12G01]
 gi|269964662|ref|ZP_06178900.1| survival protein SurA [Vibrio alginolyticus 40B]
 gi|91188762|gb|EAS75049.1| survival protein SurA [Vibrio alginolyticus 12G01]
 gi|269830561|gb|EEZ84782.1| survival protein SurA [Vibrio alginolyticus 40B]
          Length = 427

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 36/310 (11%), Positives = 112/310 (36%), Gaps = 12/310 (3%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE---- 71
           +  +  ++   ++   +  +     ++   +N  V+   DI   +  L+           
Sbjct: 1   MKIWKSILFTTLLSCGAVAAPVEIDKVAVIVNDGVVLQSDIETAMKTLQANARQSGKSLP 60

Query: 72  ----LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
               L++  V++LI++TL+ QE ++ G+  D N +N    + ARN   S E  ++ ++ +
Sbjct: 61  STSVLKEQVVEKLIIDTLQGQEADRIGVRIDDNRLNQAIAEIARNNEQSVEQLAASVESE 120

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
           G+    F++ +  +    +        +   L  E+ +  +++   T      +     +
Sbjct: 121 GLSYPEFREQIRKEIAASEARNALVRRRINILPAEVDSLAEQLSQETNATVQYKIGHIQL 180

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
             +  + +  V+   K   +              ++     +  G   ++ + ++   F 
Sbjct: 181 RFSDDKEKSAVEAEAKALAKKLNEGADFTEMAYTYSKGPKALQGGDWGWMRKEEMPTIFA 240

Query: 248 NL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAE 303
           +    +++ +   P+ +  G   + I D +    +        ++  + T    ++   +
Sbjct: 241 DQIKMQNKGSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDEGAKK 300

Query: 304 YVKKLRSNAI 313
            + +      
Sbjct: 301 QLNEFVRRIK 310



 Score = 79.3 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/270 (11%), Positives = 79/270 (29%), Gaps = 4/270 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++      L  +       KI   +L     K++   ++     +  +N       
Sbjct: 151 ILPAEVDSLAEQLSQETNATVQYKIGHIQLRFSDDKEKSAVEAEAKALAKKLNEGADFTE 210

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                S    +      G         +    I      +        +   I   +   
Sbjct: 211 MAYTYSKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIEDVK 270

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK-LEKFASKI-HD 228
              TV    +      I    + +    +K++ +             +   +++      
Sbjct: 271 GLETVAVTEVNARHILIKPTVILSDEGAKKQLNEFVRRIKAGEATFAQLATQYSQDPGSA 330

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKA 286
              G+  Y       P+F++ ++     + + P+ T  G   + + D+R +   + A+K 
Sbjct: 331 AQDGELGYQTPDLYVPEFKHQVETLPVGSISEPFKTVHGWHIVEVLDRRQVDRTDSAMKN 390

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                    K  +    ++++LR++A +  
Sbjct: 391 KAYRILFNRKFNEEAGAWMQELRASAFVEI 420


>gi|298506467|gb|ADI85190.1| peptidylprolyl cis-trans isomerase, PpiC-type [Geobacter
           sulfurreducens KN400]
          Length = 351

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 91/289 (31%), Gaps = 16/289 (5%)

Query: 42  IRTTINGEVITDGDISKRIALLKLQKI---------NGELEKIAVQELIVETLKKQEIEK 92
           +   +NG  IT  ++ +   +L  Q             ++E+ AV +LI + L  Q   K
Sbjct: 61  VVVKVNGVAITRAEVDRAKKVLMSQNRMTQPMTPDIAQKVEEAAVSQLIAKELLYQAGRK 120

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      V     Q         E   +      + +   + +     +  ++++ + 
Sbjct: 121 QEIKDLDKQVQERVSQSKARFPSQEEYLKTL-KSMDMTEKDVETFAREDLVINNLIEKEV 179

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR- 211
           + K    + +         +   R+  ++     I      +    +K  + AE    + 
Sbjct: 180 VAKTTVSDEDAKKFYNDNIDKFKRDETVKASHILIKVEPNASADDKKKAKEKAEAILKQV 239

Query: 212 --LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVE 268
                     +K +        G   +  +  + P F+           ++   TQ G  
Sbjct: 240 KGGADFAEVAKKESGCPSAPQGGDLGFFGKGQMVPPFEKAAFAMKPGEVSDVVETQFGYH 299

Query: 269 YIAICDKRDLGG--EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            I + DKR          K  +       K+++   EYV+ L+  A I 
Sbjct: 300 IIKLTDKRPAETVKFEETKDRIVQFLKQQKVQEGINEYVENLKKAAKIE 348


>gi|153803547|ref|ZP_01958133.1| survival protein SurA [Vibrio cholerae MZO-3]
 gi|297580585|ref|ZP_06942511.1| survival protein SurA [Vibrio cholerae RC385]
 gi|124120914|gb|EAY39657.1| survival protein SurA [Vibrio cholerae MZO-3]
 gi|297535001|gb|EFH73836.1| survival protein SurA [Vibrio cholerae RC385]
          Length = 431

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 35/313 (11%), Positives = 108/313 (34%), Gaps = 12/313 (3%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +KL     + ++  +    ++        +   +N  VI   D+   +  +K      + 
Sbjct: 1   MKLWKPTLISVLSALTLFNAHAEPKQLDSVAVIVNSGVILQSDVDSALKTIKANAKQNKQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L +  +++LI++TL++QE ++ G+  D N +N    + A+N   + E   + +
Sbjct: 61  PLPQETVLREQVLEKLIIDTLQQQEADRIGVKIDDNRLNEAIKEIAKNNQQTQEQLIASV 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            ++G+    F++ +  +    D        +   L  E+    + +   T      +   
Sbjct: 121 AQEGLTYPEFREQVRKEMAASDARNALVRRRINILPAEVDTLAELLAQETDATVQYKISH 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             +  +  Q++   +                      ++     +  G   ++ + ++  
Sbjct: 181 IQLRVDDGQDKSAAETLANKLVNDLRNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMPT 240

Query: 245 QFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKH 300
            F +    +++ +   P+ +  G   + I D +    +        ++  + T    ++ 
Sbjct: 241 IFADQIKMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTIILSDEG 300

Query: 301 EAEYVKKLRSNAI 313
             + + +      
Sbjct: 301 AQKQLNEFVQRIK 313



 Score = 82.8 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 82/269 (30%), Gaps = 4/269 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++     LL  +       KI+  +L V+  + +   ++      N +        
Sbjct: 154 ILPAEVDTLAELLAQETDATVQYKISHIQLRVDDGQDKSAAETLANKLVNDLRNGADFAQ 213

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                S    +      G         +    I      +        +   I       
Sbjct: 214 MAYAYSKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIDDVK 273

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKI-HD 228
              TV    +      I    + +    QK++ +  +             ++++      
Sbjct: 274 GLETVAVTEVNARHILIKPTIILSDEGAQKQLNEFVQRIKNGEVTFAELAQQYSQDPGSA 333

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKA 286
              G+  Y       P+F++ ++       + P+ T  G   + + D+R++   + ALK 
Sbjct: 334 AQKGELGYQTPDLYVPEFKHQIETLPVGQISEPFKTVHGWHIVEVLDRREVDRTDSALKN 393

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                    K  +  + ++++LR++A + 
Sbjct: 394 KAYRILFNRKFNEEASAWLQELRASAFVE 422


>gi|148255225|ref|YP_001239810.1| hypothetical protein BBta_3828 [Bradyrhizobium sp. BTAi1]
 gi|146407398|gb|ABQ35904.1| putative exported protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 312

 Score =  133 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 52/311 (16%), Positives = 118/311 (37%), Gaps = 3/311 (0%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           ++           +    ++   +    A +  I   +NG+ ITD DI +R+ L  L   
Sbjct: 1   MTIAFSSRLRALAICSLAVLASGAGLIPAQAQSIVVMVNGDPITDYDIEQRMKLNFLSTR 60

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             +  +  + ELI + +K +E +K G+   ++ V+  F        L+AE  +  L+ QG
Sbjct: 61  KQQSRQEVINELIDDKVKIKEGKKFGVEPTASDVDQSFAGMGSRMRLNAEQLTKSLESQG 120

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLK--YGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
           +     K  +  + +W  +V+  +  +    + ++          +    +     +   
Sbjct: 121 VRPETLKARIKAEIVWTSLVRGRYKERLLVSDKDVAAAVAAAGGDSDQQGQAFEYKMQPI 180

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
           +      +   V +      E+     + C           +  I +      +D+ P  
Sbjct: 181 VLIVSNSSNQAVMEARHKEAEALRARVQTCADANNVFKTTANAVIKEIVVKTSADIPPNL 240

Query: 247 QNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYV 305
           + LL  +   + T P  T++G++ +A+C +     +   K  +  +    K E     Y+
Sbjct: 241 RKLLDDTPIGHLTPPEATKQGIQMVALCARTPTTVDTPKKRQIREEMYTKKYEATSKAYL 300

Query: 306 KKLRSNAIIHY 316
           +++R  A+I Y
Sbjct: 301 QEVRKAAMIEY 311


>gi|323495831|ref|ZP_08100899.1| putative parvulin-like peptidyl-prolyl isomerase [Vibrio
           sinaloensis DSM 21326]
 gi|323319047|gb|EGA71990.1| putative parvulin-like peptidyl-prolyl isomerase [Vibrio
           sinaloensis DSM 21326]
          Length = 431

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 111/313 (35%), Gaps = 12/313 (3%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--- 69
           +K      + ++      ++        +I   +NG VI + DI   I  LK        
Sbjct: 1   MKFWKQSLLAVLAASQFGLASAQPVALDKINVIVNGGVILESDIDTSIKTLKANAKKSGQ 60

Query: 70  -----GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L +   ++LI++TL++QE E+ GI  D N +N    + A+N   + E  S  +
Sbjct: 61  GLPTADVLRQQVTEKLIIDTLQQQEAERIGIRIDDNRLNEAIEEIAKNNNQTIEQLSDSI 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
             +G+  + F++ +  +    +        +   L  E+      +   T      +   
Sbjct: 121 AAEGLEYSEFREQVRKEIAATEARNALVRRRINILPAEVDNLANILAQETNATVQYKIGH 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             +  N   +   ++++ K+                 ++     +  G   ++ + ++  
Sbjct: 181 IQLRVNDGDDASAIEQQAKEIVAKLNNGSDFATMAYTYSKGPKALQGGDWGWMRKEEMPT 240

Query: 245 QFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKH 300
            F + +  +++ +   P+ +  G   + I D +    +        ++  + T    +  
Sbjct: 241 IFADQVGVQNKGSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILIRPTVILSDDG 300

Query: 301 EAEYVKKLRSNAI 313
             + + ++ +   
Sbjct: 301 VQKELNEIIARIQ 313



 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/269 (11%), Positives = 75/269 (27%), Gaps = 4/269 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++     +L  +       KI   +L V         +         +N       
Sbjct: 154 ILPAEVDNLANILAQETNATVQYKIGHIQLRVNDGDDASAIEQQAKEIVAKLNNGSDFAT 213

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                S    +      G         +    +      +        +   I   +   
Sbjct: 214 MAYTYSKGPKALQGGDWGWMRKEEMPTIFADQVGVQNKGSIIGPFRSGVGFHILKIEDVK 273

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC-NKLEKFASKI-HD 228
              TV    +      I    + +   VQK + +                 +++      
Sbjct: 274 GLETVAVTEVNARHILIRPTVILSDDGVQKELNEIIARIQSGEATFGELARQYSQDPGSA 333

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG-GEIALKA 286
              G+  Y       P+F++ +    +   + P+ T  G   + + D+R +   + A+K 
Sbjct: 334 AQNGELGYQTSDLYVPEFKHQVDTLPEGKISQPFKTVHGWHIVEVLDRRQVDRTDSAMKN 393

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                    K  +  + ++++LR++A + 
Sbjct: 394 KAYRILFNRKFNEEASAWLQELRASAFVE 422


>gi|197116616|ref|YP_002137043.1| PpiC-type peptidylprolyl cis-trans isomerase [Geobacter
           bemidjiensis Bem]
 gi|197085976|gb|ACH37247.1| peptidylprolyl cis-trans isomerase, PpiC-type, SurA family
           [Geobacter bemidjiensis Bem]
          Length = 317

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 90/295 (30%), Gaps = 13/295 (4%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN------GELEKIAVQELIVETLKK 87
            +    S I   +N E+IT  ++ K    ++             L   A+  L+   L +
Sbjct: 21  STAKQVSGIAAIVNDEIITTQELDKEYLQIQKDADKVPGSDKSGLRGAALNRLVERKLIE 80

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           Q+I +  I      V        +   L+ E+    L  QG+    ++  L  Q     +
Sbjct: 81  QKIRELNINVSDEEVRLAIEDVKKQNNLTQENLEQALVTQGLTLAQYRTQLKEQMERLRL 140

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ---NQGFVQKRIKD 204
           +  +   K    E E+    Q          +          +K          + R  +
Sbjct: 141 MSQEVRSKVQVGEREMREYYQANIAAYGGSEVYSARHIFFKVDKKGGAGELSKAETRANE 200

Query: 205 AEESRLRLPKDCNKLEKFASKIHD-VSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYV 262
                          +K++         G      ++D+       +        ++   
Sbjct: 201 VLAKARAGEDFAALAKKYSDDPAAAKDGGDLGTFKKADMLPEIGDTVSAMKPGEVSSIVR 260

Query: 263 TQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +  G+  I +  K+         +K  +       K ++  A++VK+LR+ A I 
Sbjct: 261 SPAGLHIIKLEGKKQDAGRPFEQVKDSIEDTLYKKKSDERFAQWVKELRAGAAIE 315


>gi|312797257|ref|YP_004030179.1| peptidyl-prolyl cis-trans isomerase [Burkholderia rhizoxinica HKI
           454]
 gi|312169032|emb|CBW76035.1| Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) [Burkholderia
           rhizoxinica HKI 454]
          Length = 512

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 39/309 (12%), Positives = 110/309 (35%), Gaps = 24/309 (7%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--------ELEKIAVQEL 80
            ++S+++     RI   +N +VIT  ++  R+ L+  +            +L+   + ++
Sbjct: 92  ALLSHQAGQEVDRIVAVVNNDVITRRELDLRMGLITRRLQQQGAPLPSPDQLQLQVLNQM 151

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           ++E ++ Q  ++ GI  D  T+ +   + A+   +S + + + L+ +G+  + F      
Sbjct: 152 VLERIQLQRAKEDGIVVDDATLQHTLARLAQANNMSLDMYRARLEAEGVPWSVFSADARN 211

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPAN----KQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
           + +   + + +   +    + E+       +  M+ +         ++ +  +       
Sbjct: 212 ELLLSKLREKEVDSRITVSDAEVANYIASQRGPMQRVQQDLRFEHILIKAALNAPQTEIE 271

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             +++  +  +  L         +  +        G   +   S L         + +  
Sbjct: 272 AARQKASELLKRALASENFARLAKDNSQAPDASKGGDLGFRSTSALPEAMTQAASQLRPG 331

Query: 257 TTNP--YVTQKGVEYIAICDKRDLGGE--------IALKAYLSAQNTPTKIEKHEAEYVK 306
             NP    T +G E + + D+R   G              ++  +    + E    + + 
Sbjct: 332 QVNPEVLRTPEGFEIVRLVDRRVSSGMGSEAPRLVQTHARHILIRIGEGQPEPAARQKLV 391

Query: 307 KLRSNAIIH 315
           +LR    I 
Sbjct: 392 ELREQ--IE 398



 Score =  114 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/284 (10%), Positives = 87/284 (30%), Gaps = 22/284 (7%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQ---ELIV------ETLKKQEIEKSGITFDSNT 101
           IT  D ++    +  Q+   +  +  ++    LI       +T  +   +K+        
Sbjct: 227 ITVSD-AEVANYIASQRGPMQRVQQDLRFEHILIKAALNAPQTEIEAARQKASELLKRAL 285

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
            +  F + A++   + +                +           +       +      
Sbjct: 286 ASENFARLAKDNSQAPDASKGGDLGFRSTSALPEAMTQ---AASQLRPGQVNPEVLRTPE 342

Query: 162 EIPANKQKMKNITVRE-------YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
                +   + ++                   I   + Q +   ++++ +  E       
Sbjct: 343 GFEIVRLVDRRVSSGMGSEAPRLVQTHARHILIRIGEGQPEPAARQKLVELREQIEAGGD 402

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAIC 273
             N    ++        G   ++   +  P+F+  +        + P  T+ G   I + 
Sbjct: 403 FANFAHTYSQDGSASQGGDLGWISPGETVPEFERAMNNLKDGEISQPIRTEYGYHLIQVM 462

Query: 274 DKRDLGGEIALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            +R+  G +A +  +        K E+  A+++++LR +A + Y
Sbjct: 463 GRREAQGSVAQQQEIARQAIGQRKAEQAYADWLRQLRDSAYVQY 506


>gi|86357089|ref|YP_468981.1| peptidyl-prolyl cis-trans isomerase protein [Rhizobium etli CFN 42]
 gi|86281191|gb|ABC90254.1| probable peptidyl-prolyl cis-trans isomerase protein [Rhizobium
           etli CFN 42]
          Length = 314

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 81/311 (26%), Positives = 151/311 (48%), Gaps = 11/311 (3%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K +T +       ++  ++  + A +S ++  +NG  IT GD++KR A L+LQ    +  
Sbjct: 6   KAITAFLAGAAIALLTGLAGPALA-ASGVQAVVNGTAITSGDVAKRQAFLRLQHTKADA- 63

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           K A ++LI ETLK+QE+ +  ++     V+  F + +    LS E  S  LD+ G+G +H
Sbjct: 64  KTATEQLIDETLKRQEVARVHMSVSQQDVDASFARFSAGNKLSVEQMSQILDRAGVGVDH 123

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
           FK ++A+Q  WP VV   +         ++ +   +                     + +
Sbjct: 124 FKGFIAVQMSWPRVVNARYGSTSRLSNYDLVSRMMQNNKQKPVTTEYMLQQIIFVIPEAK 183

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS 253
                 KR  +AE SR + P   ++ + FA+ + DVS+     +L  ++ P +++L++++
Sbjct: 184 RGAITGKRKGEAEASRSKFPGC-DQAKTFAATMRDVSVRDLGRMLAPEIPPDWKSLVEQA 242

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI--------EKHEAEYV 305
           + NTT   VT+KGVEY+AIC +R +  + A +     ++              ++  +Y+
Sbjct: 243 KGNTTGTRVTEKGVEYLAICSQRQVSDDQAAEMVFRQEDLDKSKAGKNGPPENENSKKYL 302

Query: 306 KKLRSNAIIHY 316
            +LR  A I Y
Sbjct: 303 DELRKKAQIAY 313


>gi|15640472|ref|NP_230099.1| survival protein SurA [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121729954|ref|ZP_01682374.1| survival protein SurA [Vibrio cholerae V52]
 gi|147674503|ref|YP_001218713.1| survival protein SurA [Vibrio cholerae O395]
 gi|153823925|ref|ZP_01976592.1| survival protein SurA [Vibrio cholerae B33]
 gi|227080656|ref|YP_002809207.1| survival protein SurA [Vibrio cholerae M66-2]
 gi|229507084|ref|ZP_04396590.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae BX
           330286]
 gi|229508761|ref|ZP_04398253.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae B33]
 gi|229519748|ref|ZP_04409191.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae RC9]
 gi|229606260|ref|YP_002876908.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae MJ-1236]
 gi|254850676|ref|ZP_05240026.1| chaperone surA precursor [Vibrio cholerae MO10]
 gi|255743828|ref|ZP_05417785.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholera CIRS 101]
 gi|262147181|ref|ZP_06027987.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae INDRE
           91/1]
 gi|262167591|ref|ZP_06035295.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae RC27]
 gi|298501023|ref|ZP_07010824.1| survival protein SurA [Vibrio cholerae MAK 757]
 gi|81788531|sp|Q9KUS0|SURA_VIBCH RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|9654869|gb|AAF93618.1| survival protein SurA [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121628294|gb|EAX60804.1| survival protein SurA [Vibrio cholerae V52]
 gi|126518552|gb|EAZ75775.1| survival protein SurA [Vibrio cholerae B33]
 gi|146316386|gb|ABQ20925.1| survival protein SurA [Vibrio cholerae O395]
 gi|227008544|gb|ACP04756.1| survival protein SurA [Vibrio cholerae M66-2]
 gi|227012299|gb|ACP08509.1| survival protein SurA [Vibrio cholerae O395]
 gi|229344437|gb|EEO09412.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae RC9]
 gi|229354164|gb|EEO19095.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae B33]
 gi|229355829|gb|EEO20749.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae BX
           330286]
 gi|229368915|gb|ACQ59338.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae MJ-1236]
 gi|254846381|gb|EET24795.1| chaperone surA precursor [Vibrio cholerae MO10]
 gi|255738577|gb|EET93965.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholera CIRS 101]
 gi|262023927|gb|EEY42624.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae RC27]
 gi|262031386|gb|EEY49994.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae INDRE
           91/1]
 gi|297540271|gb|EFH76331.1| survival protein SurA [Vibrio cholerae MAK 757]
          Length = 431

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 35/313 (11%), Positives = 108/313 (34%), Gaps = 12/313 (3%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +KL     + ++  +    ++        +   +N  VI   D+   +  +K      + 
Sbjct: 1   MKLWKPTLISVLSALTLFNAHAEPKQLDSVAVIVNSGVILQSDVDSALKTIKANAKQNKQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L +  +++LI++TL++QE ++ G+  D N +N    + A+N   + E   + +
Sbjct: 61  PLPQETVLREQVLEKLIIDTLQQQEADRIGVKIDDNRLNEAIKEIAKNNQQTQEQLIASV 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            ++G+    F++ +  +    D        +   L  E+    + +   T      +   
Sbjct: 121 AQEGLTYPEFREQVRKEMAASDARNALVRRRINILPAEVDTLAELLAQETDATVQYKISH 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             +  +  Q++   +                      ++     +  G   ++ + ++  
Sbjct: 181 IQLRVDDGQDKSTAETLANKLVNDLRNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMPT 240

Query: 245 QFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKH 300
            F +    +++ +   P+ +  G   + I D +    +        ++  + T    ++ 
Sbjct: 241 IFADQIKMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTIILSDEG 300

Query: 301 EAEYVKKLRSNAI 313
             + + +      
Sbjct: 301 AQKQLNEFVQRIK 313



 Score = 83.2 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 82/269 (30%), Gaps = 4/269 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++     LL  +       KI+  +L V+  + +   ++      N +        
Sbjct: 154 ILPAEVDTLAELLAQETDATVQYKISHIQLRVDDGQDKSTAETLANKLVNDLRNGADFAQ 213

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                S    +      G         +    I      +        +   I       
Sbjct: 214 MAYAYSKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIDDVK 273

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKI-HD 228
              TV    +      I    + +    QK++ +  +             ++++      
Sbjct: 274 GLETVAVTEVNARHILIKPTIILSDEGAQKQLNEFVQRIKNGEVTFAELAQQYSQDPGSA 333

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKA 286
              G+  Y       P+F++ ++       + P+ T  G   + + D+R++   + ALK 
Sbjct: 334 AQKGELGYQTPDLYVPEFKHQIETLPVGQISEPFKTVHGWHIVEVLDRREVDRTDSALKN 393

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                    K  +  + ++++LR++A + 
Sbjct: 394 KAYRILFNRKFNEEASAWLQELRASAFVE 422


>gi|254292211|ref|ZP_04962978.1| survival protein SurA [Vibrio cholerae AM-19226]
 gi|150421868|gb|EDN13848.1| survival protein SurA [Vibrio cholerae AM-19226]
          Length = 431

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 35/313 (11%), Positives = 108/313 (34%), Gaps = 12/313 (3%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +KL     + ++  +    ++        +   +N  VI   D+   +  +K      + 
Sbjct: 1   MKLWKPTLISVLSALTLFNAHAEPKQLDSVAVIVNSGVILQSDVDSALKTIKANAKQNKQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L +  +++LI++TL++QE ++ G+  D N +N    + A+N   + E   + +
Sbjct: 61  PLPQETVLREQVLEKLIIDTLQQQEADRIGVKIDDNRLNEAIKEIAKNNQQTQEQLIASI 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            ++G+    F++ +  +    D        +   L  E+    + +   T      +   
Sbjct: 121 AQEGLTYPEFREQVRKEMAASDARNALVRRRINILPAEVDTLAELLAQETDATVQYKISH 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             +  +  Q++   +                      ++     +  G   ++ + ++  
Sbjct: 181 IQLRVDDGQDKSAAETLANKLVNDLRNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMPT 240

Query: 245 QFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKH 300
            F +    +++ +   P+ +  G   + I D +    +        ++  + T    ++ 
Sbjct: 241 IFADQIKMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTIILSDEG 300

Query: 301 EAEYVKKLRSNAI 313
             + + +      
Sbjct: 301 AQKQLNEFVQRIK 313



 Score = 82.4 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 82/269 (30%), Gaps = 4/269 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++     LL  +       KI+  +L V+  + +   ++      N +        
Sbjct: 154 ILPAEVDTLAELLAQETDATVQYKISHIQLRVDDGQDKSAAETLANKLVNDLRNGADFAQ 213

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                S    +      G         +    I      +        +   I       
Sbjct: 214 MAYAYSKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIDDVK 273

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKI-HD 228
              TV    +      I    + +    QK++ +  +             ++++      
Sbjct: 274 GLETVAVTEVNARHILIKPTIILSDEGAQKQLNEFVQRIKNGEVTFAELAQQYSQDPGSA 333

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKA 286
              G+  Y       P+F++ ++       + P+ T  G   + + D+R++   + ALK 
Sbjct: 334 AQKGELGYQTPDLYVPEFKHQIETLPVGQISEPFKTVHGWHIVEVLDRREVDRTDSALKN 393

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                    K  +  + ++++LR++A + 
Sbjct: 394 KAYRILFNRKFNEEASAWLQELRASAFVE 422


>gi|153827415|ref|ZP_01980082.1| survival protein SurA [Vibrio cholerae MZO-2]
 gi|149738658|gb|EDM53001.1| survival protein SurA [Vibrio cholerae MZO-2]
          Length = 431

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 35/313 (11%), Positives = 108/313 (34%), Gaps = 12/313 (3%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +KL     + ++  +    ++        +   +N  VI   D+   +  +K      + 
Sbjct: 1   MKLWKPTLISVLSALTLFNAHAEPKQLDSVAVIVNSGVILQSDVDSALKTIKANAKQNKQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L +  +++LI++TL++QE ++ G+  D N +N    + A+N   + E   + +
Sbjct: 61  PLPQETVLREQVLEKLIIDTLQQQEADRIGVKIDDNRLNEAIKEIAKNNQQTQEQLIASV 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            ++G+    F++ +  +    D        +   L  E+    + +   T      +   
Sbjct: 121 AQEGLTYPEFREQVRKEMAASDARNALVRRRINILPAEVDTLAELLAQETDATVQYKISH 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             +  +  Q++   +                      ++     +  G   ++ + ++  
Sbjct: 181 IQLRVDDGQDKNAAETLANKLVNDLKNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMPT 240

Query: 245 QFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKH 300
            F +    +++ +   P+ +  G   + I D +    +        ++  + T    ++ 
Sbjct: 241 IFADQIKMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTIILSDEG 300

Query: 301 EAEYVKKLRSNAI 313
             + + +      
Sbjct: 301 AQKQLNEFVQRIK 313



 Score = 82.4 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 82/269 (30%), Gaps = 4/269 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++     LL  +       KI+  +L V+  + +   ++      N +        
Sbjct: 154 ILPAEVDTLAELLAQETDATVQYKISHIQLRVDDGQDKNAAETLANKLVNDLKNGADFAQ 213

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                S    +      G         +    I      +        +   I       
Sbjct: 214 MAYAYSKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIDDVK 273

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKI-HD 228
              TV    +      I    + +    QK++ +  +             ++++      
Sbjct: 274 GLETVAVTEVNARHILIKPTIILSDEGAQKQLNEFVQRIKNGEVTFAELAQQYSQDPGSA 333

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKA 286
              G+  Y       P+F++ ++       + P+ T  G   + + D+R++   + ALK 
Sbjct: 334 AQKGELGYQTPDLYVPEFKHQIETLPVGQISEPFKTVHGWHIVEVLDRREVDRTDSALKN 393

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                    K  +  + ++++LR++A + 
Sbjct: 394 KAYRILFNRKFNEEASAWLQELRASAFVE 422


>gi|153217229|ref|ZP_01950993.1| survival protein SurA [Vibrio cholerae 1587]
 gi|153830824|ref|ZP_01983491.1| survival protein SurA [Vibrio cholerae 623-39]
 gi|229519985|ref|ZP_04409414.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae TM
           11079-80]
 gi|229525138|ref|ZP_04414543.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae bv.
           albensis VL426]
 gi|124113752|gb|EAY32572.1| survival protein SurA [Vibrio cholerae 1587]
 gi|148873683|gb|EDL71818.1| survival protein SurA [Vibrio cholerae 623-39]
 gi|229338719|gb|EEO03736.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae bv.
           albensis VL426]
 gi|229342934|gb|EEO07923.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae TM
           11079-80]
          Length = 431

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 35/313 (11%), Positives = 108/313 (34%), Gaps = 12/313 (3%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +KL     + ++  +    ++        +   +N  VI   D+   +  +K      + 
Sbjct: 1   MKLWKPTLISVLSALTLFNAHAEPKQLDSVAVIVNSGVILQSDVDSALKTIKANAKQNKQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L +  +++LI++TL++QE ++ G+  D N +N    + A+N   + E   + +
Sbjct: 61  PLPQETVLREQVLEKLIIDTLQQQEADRIGVKIDDNRLNEAIKEIAKNNQQTQEQLIASV 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            ++G+    F++ +  +    D        +   L  E+    + +   T      +   
Sbjct: 121 AQEGLTYPEFREQVRKEMAASDARNALVRRRINILPAEVDTLAELLAQETDATVQYKISH 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             +  +  Q++   +                      ++     +  G   ++ + ++  
Sbjct: 181 IQLRVDDGQDKSAAETLANKLVNDLKNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMPT 240

Query: 245 QFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKH 300
            F +    +++ +   P+ +  G   + I D +    +        ++  + T    ++ 
Sbjct: 241 IFADQIKMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTIILSDEG 300

Query: 301 EAEYVKKLRSNAI 313
             + + +      
Sbjct: 301 AQKQLNEFVQRIK 313



 Score = 82.4 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 82/269 (30%), Gaps = 4/269 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++     LL  +       KI+  +L V+  + +   ++      N +        
Sbjct: 154 ILPAEVDTLAELLAQETDATVQYKISHIQLRVDDGQDKSAAETLANKLVNDLKNGADFAQ 213

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                S    +      G         +    I      +        +   I       
Sbjct: 214 MAYAYSKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIDDVK 273

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKI-HD 228
              TV    +      I    + +    QK++ +  +             ++++      
Sbjct: 274 GLETVAVTEVNARHILIKPTIILSDEGAQKQLNEFVQRIKNGEVTFAELAQQYSQDPGSA 333

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKA 286
              G+  Y       P+F++ ++       + P+ T  G   + + D+R++   + ALK 
Sbjct: 334 AQKGELGYQTPDLYVPEFKHQIETLPVGQISEPFKTVHGWHIVEVLDRREVDRTDSALKN 393

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                    K  +  + ++++LR++A + 
Sbjct: 394 KAYRILFNRKFNEEASAWLQELRASAFVE 422


>gi|238918641|ref|YP_002932155.1| peptidyl-prolyl cis-trans isomerase SurA [Edwardsiella ictaluri
           93-146]
 gi|238868209|gb|ACR67920.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 434

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 112/311 (36%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   +    ++ +  +  ++   ++  V+ + D+   +  +KL              L
Sbjct: 7   LILGVALCANTAFAAPQVVDKVVAIVDNGVVLESDVDGMMKSVKLNAQQAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ ++ Q  ++ G+    + ++      A+   +S +   S L   G+   
Sbjct: 67  RHQILERLIMDNVQLQMAKRMGLEISDSELDNAINGIAQQNHISMQQLRSRLAADGLDYK 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + +  +V  N+   +   L  E+ A  +++ +    E  +      IP  + 
Sbjct: 127 TYRDQIRKEMLISEVRNNEVRSRVTILPQEVDALAKQIGSQNSGETAVNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAE---ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
             Q  V +  K AE   +   +          +++    +  G+  +    +L   F + 
Sbjct: 187 PTQQQVSEAQKQAESLIQQLHQGASFAKLAAAYSADPQALKGGEMGWGRLQELPTLFAEA 246

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
           L    + +   P  +  G   + + D R     +        ++  + +P   +      
Sbjct: 247 LQSAKKGDIVGPIRSGVGFHILRVNDLRGDQASVSVTEVHARHILLRPSPVMSDTQARAK 306

Query: 305 VKKLRSNAIIH 315
           ++ L  +A I 
Sbjct: 307 LEAL--SAQIK 315



 Score = 89.0 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 85/285 (29%), Gaps = 17/285 (5%)

Query: 47  NGEV-----ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           N EV     I   ++      +  Q        ++   LI       + + S     + +
Sbjct: 143 NNEVRSRVTILPQEVDALAKQIGSQNSGETAVNLS-HILIPLPENPTQQQVSEAQKQAES 201

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-------FML 154
           +     Q A    L+A   +     +G      +           +              
Sbjct: 202 LIQQLHQGASFAKLAAAYSADPQALKGGEMGWGRLQELPTLFAEALQSAKKGDIVGPIRS 261

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
             G   + +   +    +++V E   R +L   P   + +     K    + + +     
Sbjct: 262 GVGFHILRVNDLRGDQASVSVTEVHARHIL-LRPSPVMSDTQARAKLEALSAQIKSGQIT 320

Query: 215 DCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAI 272
                ++++         G   + + S   P F++  +K ++   + P  +  G   I +
Sbjct: 321 FEQAAKEYSQDPGSAQKGGDLGWAVPSMYDPAFRDALMKLNKGEISQPVHSNFGWHLIQL 380

Query: 273 CDKRDLG-GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            D R +   + A K          K  +    ++++ R+ A +  
Sbjct: 381 LDTRQVDRTDEAQKERAYRMLFNRKFAEEAQTWLQEQRAAAYVKI 425


>gi|229530289|ref|ZP_04419677.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae 12129(1)]
 gi|229332062|gb|EEN97550.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae 12129(1)]
          Length = 431

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 36/313 (11%), Positives = 108/313 (34%), Gaps = 12/313 (3%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +KL     + ++  +    ++        +   +N  VI   D+   +  +K      + 
Sbjct: 1   MKLWKPTLISVLSALTLFNAHAEPKQLDSVAVIVNSGVILQSDVDSALKTIKANAKQNKQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L +  +++LI++TL++QE ++ G+  D N +N    + A+N   + E   + +
Sbjct: 61  PLPQETVLREQVLEKLIIDTLQQQEADRIGVKIDDNRLNEAIKEIAKNNQQTQEQLIASV 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            K+G+    F++ +  +    D        +   L  E+    + +   T      +   
Sbjct: 121 AKEGLTYPEFREQVRKEMAASDARNALVRRRINILPAEVDTLAELLAQETDATVQYKISH 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             +  +  Q++   +                      ++     +  G   ++ + ++  
Sbjct: 181 IQLRVDDGQDKSAAETLANKLVNDLKNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMPT 240

Query: 245 QFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKH 300
            F +    +++ +   P+ +  G   + I D +    +        ++  + T    ++ 
Sbjct: 241 IFADQIKMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTIILSDEG 300

Query: 301 EAEYVKKLRSNAI 313
             + + +      
Sbjct: 301 AQKQLNEFVQRIK 313



 Score = 82.4 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 82/269 (30%), Gaps = 4/269 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++     LL  +       KI+  +L V+  + +   ++      N +        
Sbjct: 154 ILPAEVDTLAELLAQETDATVQYKISHIQLRVDDGQDKSAAETLANKLVNDLKNGADFAQ 213

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                S    +      G         +    I      +        +   I       
Sbjct: 214 MAYAYSKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIDDVK 273

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKI-HD 228
              TV    +      I    + +    QK++ +  +             ++++      
Sbjct: 274 GLETVAVTEVNARHILIKPTIILSDEGAQKQLNEFVQRIKNGEVTFAELAQQYSQDPGSA 333

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKA 286
              G+  Y       P+F++ ++       + P+ T  G   + + D+R++   + ALK 
Sbjct: 334 AQKGELGYQTPDLYVPEFKHQIETLPVGQISEPFKTVHGWHIVEVLDRREVDRTDSALKN 393

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                    K  +  + ++++LR++A + 
Sbjct: 394 KAYRILFNRKFNEEASAWLQELRASAFVE 422


>gi|262403929|ref|ZP_06080486.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio sp. RC586]
 gi|262349891|gb|EEY99027.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio sp. RC586]
          Length = 431

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 35/313 (11%), Positives = 108/313 (34%), Gaps = 12/313 (3%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +KL     + ++  +    ++        +   +N  VI   D+   +  +K      + 
Sbjct: 1   MKLWKPTLISVLSALTLFNAHAEPKQLDSVAVIVNSGVILQSDVDSALKTIKANAKQNKQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L +  +++LI++TL++QE ++ G+  D N +N    + A+N   + E   + +
Sbjct: 61  PLPQETVLREQVLEKLIIDTLQQQEADRIGVKIDDNRLNEAIKEIAKNNQQTQEQLIASV 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            ++G+    F++ +  +    D        +   L  E+    + +   T      +   
Sbjct: 121 AQEGLTYPEFREQIRKEMAASDARNALVRRRINILPAEVDTLAELLAQETDATVQYKISH 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             +  +  Q++   +                      ++     +  G   ++ + ++  
Sbjct: 181 IQLRVDDGQDKSAAETLANKLVNDLKNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMPT 240

Query: 245 QFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKH 300
            F +    +++ +   P+ +  G   + I D +    +        ++  + T    ++ 
Sbjct: 241 IFADQIKMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTIILSDEG 300

Query: 301 EAEYVKKLRSNAI 313
             + + +      
Sbjct: 301 AQKQLNEFVQRIK 313



 Score = 82.4 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 82/269 (30%), Gaps = 4/269 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++     LL  +       KI+  +L V+  + +   ++      N +        
Sbjct: 154 ILPAEVDTLAELLAQETDATVQYKISHIQLRVDDGQDKSAAETLANKLVNDLKNGADFAQ 213

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                S    +      G         +    I      +        +   I       
Sbjct: 214 MAYAYSKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIDDVK 273

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKI-HD 228
              TV    +      I    + +    QK++ +  +             ++++      
Sbjct: 274 GLETVAVTEVNARHILIKPTIILSDEGAQKQLNEFVQRIKNGEVTFAELAQQYSQDPGSA 333

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKA 286
              G+  Y       P+F++ ++       + P+ T  G   + + D+R++   + ALK 
Sbjct: 334 AQKGELGYQTPDLYVPEFKHQIETLPVGQISEPFKTVHGWHIVEVLDRREVDRTDSALKN 393

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                    K  +  + ++++LR++A + 
Sbjct: 394 KAYRILFNRKFNEEASAWLQELRASAFVE 422


>gi|240949661|ref|ZP_04753996.1| peptidyl-prolyl cis-trans isomerase SurA [Actinobacillus minor
           NM305]
 gi|240295919|gb|EER46595.1| peptidyl-prolyl cis-trans isomerase SurA [Actinobacillus minor
           NM305]
          Length = 317

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 58/316 (18%), Positives = 106/316 (33%), Gaps = 15/316 (4%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K  +   +L+ F     +S   +A   R+  T++G +I +  +++    L  +      
Sbjct: 1   MKFTSAKSLLVAFVATLGLSQSLFAAEERVVATVDGNMIMESQVARA---LGKKANTEAN 57

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            K A++ +I E L ++ I++SG+  D   V+    + A   GL+       LD QGI  N
Sbjct: 58  RKAALESIIDEMLVQKAIQQSGVKVDYRRVDQAIEEIAARNGLTYGQLLDALDYQGISLN 117

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV---------REYLIRTV 183
            ++Q +A Q +   V              E+ A  Q +                    + 
Sbjct: 118 QYRQQIAQQMMMEAVRHQSIGKSIQVNPEEVRAQAQALMAKDKAAGKLKAVSGTEPRISH 177

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQY-LLESD 241
           +       L +     K      + +          +  +         G   +  L+  
Sbjct: 178 ILIKTTPVLNDAQAKAKLNSIIADIKAGKTTFEEAAKANSVDYVSAADGGDLGFNFLDIY 237

Query: 242 LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKH 300
                    K  Q   T P+ +Q G   + + D R         A     Q    + E  
Sbjct: 238 DPAFANAAAKAKQGQITAPFKSQFGWHILKVTDSRQGDRTEDAYAQRAYEQLANQQAEAA 297

Query: 301 EAEYVKKLRSNAIIHY 316
             ++VK LR  A I Y
Sbjct: 298 SKDWVKALRKTANIQY 313


>gi|254509382|ref|ZP_05121467.1| chaperone SurA [Vibrio parahaemolyticus 16]
 gi|219547690|gb|EED24730.1| chaperone SurA [Vibrio parahaemolyticus 16]
          Length = 431

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 110/313 (35%), Gaps = 12/313 (3%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--- 69
           +K      + +       ++Y       +I   +N  VI + DI   I  LK        
Sbjct: 1   MKFWKKSLLALFAASQFTLAYAQPVALDKINVIVNSGVILESDIDTSIKTLKANARKNGQ 60

Query: 70  -----GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L +   ++LI++TL++QE E+ G+  D N +N    + A+N   + E  S  +
Sbjct: 61  GLPEQEVLRQQVTEKLIIDTLQQQEAERIGVRIDDNRLNQAIEEIAKNNNQTIEQLSDSI 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
             +G+  + F++ +  +    +        +   L  E+      +   T      +   
Sbjct: 121 AAEGLEYSEFREQVRKEIAATEARNALVRRRINILPAEVDNLANILAQETNATVQYKISH 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             +  N   +   ++K+ KD                 ++     +  G   ++ + ++  
Sbjct: 181 IQLRVNDGDDASALEKQAKDIVAKLKEGADFATMAYTYSKGPKALQGGDWGWMRKEEMPT 240

Query: 245 QFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKH 300
            F + +  +++ +   P+ +  G   + I D +    +        ++  + T    ++ 
Sbjct: 241 IFADNINLENKGSVIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIRPTVILSDEG 300

Query: 301 EAEYVKKLRSNAI 313
             + + ++     
Sbjct: 301 VQKELNEIIERIQ 313



 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/270 (11%), Positives = 77/270 (28%), Gaps = 4/270 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++     +L  +       KI+  +L V         +         +        
Sbjct: 154 ILPAEVDNLANILAQETNATVQYKISHIQLRVNDGDDASALEKQAKDIVAKLKEGADFAT 213

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                S    +      G         +   +I  +   +        +   I       
Sbjct: 214 MAYTYSKGPKALQGGDWGWMRKEEMPTIFADNINLENKGSVIGPFRSGVGFHILKIDDVK 273

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC-NKLEKFASKI-HD 228
              TV    +      I    + +   VQK + +  E              +++      
Sbjct: 274 GLETVAVTEVNARHILIRPTVILSDEGVQKELNEIIERIQAGEATFGELARQYSQDPGSA 333

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG-GEIALKA 286
              G+  Y       P+F++ +    +   + P+ T  G   + + D+R +   + A+K 
Sbjct: 334 AQNGELGYQTSDLYVPEFKHQVDTLPEGQISEPFKTVHGWHIVEVLDRRQVDRTDSAMKN 393

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                    K  +  + ++++LR++A +  
Sbjct: 394 KAYRILFNRKFNEEASAWLQELRASAFVEI 423


>gi|220919569|ref|YP_002494873.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219957423|gb|ACL67807.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 338

 Score =  132 bits (332), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 94/293 (32%), Gaps = 18/293 (6%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKI------------NGELEKIAVQELIVETLKK 87
            R+   +NG+V+T  ++ +R A L L                 +  + A  +++ + L  
Sbjct: 37  DRVAAIVNGDVVTLQELEQRAAALGLAAADALPAGPARDKARADALRRAFDQVVSDKLFA 96

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           ++ ++  I      V+       +  G +     S L  +G     ++  +  +     +
Sbjct: 97  EKAKELEIEVTEKQVDDAIEGVKKQNGFTDAQLESALASEGYSMTDYRARIRRELQNFSL 156

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD---NKLQNQGFVQKRIKD 204
           ++     K    E ++    Q        E  +R     IP       Q +   +   + 
Sbjct: 157 LQYKVAGKIKTSEEDLRNYYQSHPQEFDGEDEVRVRHIFIPFAEGGGAQAEAQARAEGRR 216

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVT 263
             +            +  +        G+  +L    +H   ++          +     
Sbjct: 217 VLQRLKTGEDFGAVAKAVSRGPSAEEGGELGWLKRGTIHRTLEDAAFALKTGEMSGLVEA 276

Query: 264 QKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             GV  + + ++R          +  +  +    + E +  +YV +LR +A+I
Sbjct: 277 GPGVHILKVEERRRGGGKSFEQARDEIRQRLGEEQAENYRQQYVAELRRDALI 329


>gi|332531190|ref|ZP_08407103.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hylemonella gracilis
           ATCC 19624]
 gi|332039297|gb|EGI75710.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hylemonella gracilis
           ATCC 19624]
          Length = 447

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 37/325 (11%), Positives = 98/325 (30%), Gaps = 25/325 (7%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSW----AMSSRIRTTINGEVITDGDISKRIALLKLQK-- 67
           ++L T  +L +          +       +  I   +N E IT+  ++  +A    Q   
Sbjct: 9   RVLCTAMLLAVLGAAQAQGTPAPPPSVRSADYIVAVVNSEPITNAQVNAEVARALRQLAA 68

Query: 68  ------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
                     L +  + +LI E  + Q   + G+  D  +V+      AR   L+     
Sbjct: 69  QRRPAPEGQALRRQVLDQLINERAQLQLAREMGLKIDEPSVDQAEQNVARQNQLTVTQLR 128

Query: 122 SFLDKQGIGDNHF-KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE--- 177
             + +Q        +  L  Q +   + + +   +    + ++     + +         
Sbjct: 129 EQVQQQDGMTTQALRARLKEQLLLTRLREREVDARVKVSDADVEQYLSEQQQRNSNPASQ 188

Query: 178 -YLIRTVLFSIPDNKLQNQGFVQKRIKDAEE--SRLRLPKDCNKLEKFASKIHDVSIGKA 234
              I  +L ++P++         +R  +     +R +         + +      + G+ 
Sbjct: 189 LIHIAHILVAVPEDASATFQLESQRKAEQIARRAREKGADFAALARELSDAADRANGGQL 248

Query: 235 QYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR-----DLGGEIALKAYL 288
                      F N ++  +    + P  +  G   + + ++R           +   ++
Sbjct: 249 GLRAGDRYPALFTNAVRTLAVGEISEPVRSGAGFHVLKLIERRQPAPAPQTVTQSRARHI 308

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNAI 313
               +    E    + +   R    
Sbjct: 309 LLIPSAQLSEAQARDKLNDFRRRIQ 333



 Score = 94.4 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 49/155 (31%), Gaps = 3/155 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           I   +      TV +   R +L        + Q    K        +           + 
Sbjct: 288 IERRQPAPAPQTVTQSRARHILLIPSAQLSEAQA-RDKLNDFRRRIQSGDTDFATLARQN 346

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           +        G   +       P+F+N++ + +    + P +++ GV  I + ++R     
Sbjct: 347 SQDGSAAQGGDLGWASPGMFVPEFENVMNQLAPGQISEPLISRFGVHLIQLLERRQATLN 406

Query: 282 IALKAY-LSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
              +   +       K+ +    +++  R+ A + 
Sbjct: 407 EREQRELVRNMLRERKMAEAYDNWIRDTRARAYVE 441


>gi|261855875|ref|YP_003263158.1| SurA domain protein [Halothiobacillus neapolitanus c2]
 gi|261836344|gb|ACX96111.1| SurA domain protein [Halothiobacillus neapolitanus c2]
          Length = 465

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 57/341 (16%), Positives = 118/341 (34%), Gaps = 30/341 (8%)

Query: 1   MTSKVFTS--LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSS-----------RIRTTIN 47
           MT+   +S  L  F +L   +  L       +V       +            RI   +N
Sbjct: 1   MTTSPRSSFLLHIFARLTPAWLALAAGLSFGVVFSTPTIAADLTPAAGEQMFDRIVAVVN 60

Query: 48  GEVITDGDISKRIALLKLQKING--------ELEKIAVQELIVETLKKQEIEKSGITFDS 99
             VIT   ++ RI  +  Q            +LE+  +  +I E ++ Q  ++ GIT D 
Sbjct: 61  QSVITQRQLNDRIQQVSSQINIQALSPSDFKQLEERVLDRMITEEVELQRAKQIGITVDE 120

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
             ++      A+  G+S +     + +QG   N ++  +  Q I  ++ + +   +    
Sbjct: 121 QRLDSALDGIAQRNGMSLDQLQQAVTRQGEDWNAYRDNIRKQIIIDELKRREVYERVDIT 180

Query: 160 EMEIPAN--KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
           + +I     +    +    EY +  +L S+P+N   +Q    K+  D   + L+  +D  
Sbjct: 181 DRDIDEYLKQYMGADTDTTEYHLAQILISVPENATPSQVENAKKRADDVMAALKAGQDFA 240

Query: 218 KLEKF-ASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK 275
           K+    +        G   +   S +   F + +K       +    +  G   + +  +
Sbjct: 241 KVSAERSDAPDATKGGDLGWRDMSRIPGLFTDTVKSLKTGEISGLIRSPNGFHILKLLGE 300

Query: 276 RD-----LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           R               ++  Q    +         +KLR  
Sbjct: 301 RKRTAGNTQLTEYEAEHVLIQVNGKRDATAAKAQAEKLRQE 341



 Score = 86.3 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/275 (12%), Positives = 93/275 (33%), Gaps = 13/275 (4%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           ITD DI + +        + +  +  + ++++   +     +              ++  
Sbjct: 179 ITDRDIDEYLKQY--MGADTDTTEYHLAQILISVPENATPSQVENAKKRADDVMAALKAG 236

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG--------NLEME 162
           ++    + + S   D    GD  ++    I  ++ D VK+    +             ++
Sbjct: 237 QDFAKVSAERSDAPDATKGGDLGWRDMSRIPGLFTDTVKSLKTGEISGLIRSPNGFHILK 296

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +   +++    T         +    + K        +  K  +E             K+
Sbjct: 297 LLGERKRTAGNTQLTEYEAEHVLIQVNGKRDATAAKAQAEKLRQEIISGKATFAEIASKY 356

Query: 223 ASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGG 280
           +         G   ++  SD+ P+F  +L+++     +  + TQ G  ++ +   R++  
Sbjct: 357 SDDKGSAQQGGLLGWVNPSDMVPEFATMLEQTPVGKISPVFQTQFGFHFLEVLKTREVQV 416

Query: 281 EIAL-KAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                +A         + ++    Y+++LR+ A I
Sbjct: 417 PTDKLRAQARQAIGQRRADEDLVNYIRRLRAEAYI 451


>gi|197124851|ref|YP_002136802.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           K]
 gi|196174700|gb|ACG75673.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           K]
          Length = 336

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 96/293 (32%), Gaps = 18/293 (6%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKI------------NGELEKIAVQELIVETLKK 87
            R+   +NG+V+T  ++ +R A L L                 +  + A  +++ + L  
Sbjct: 35  DRVAAIVNGDVVTLQELEQRAAALGLAAADALPAGPARDKARADALRRAFDQVVSDKLFA 94

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           ++ ++  I      V+       +  G +     S L  +G     ++  +  +     +
Sbjct: 95  EKAKELEIEVTEKQVDDAIEGVKKQNGFTDAQLESALASEGYSMTDYRARIRRELQNFSL 154

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           ++     K    E ++    Q        E  +R     IP  +        +   + + 
Sbjct: 155 LQYKVAGKIKTSEEDLRNYYQSHPQEFDGEDEVRVRHIFIPFAEGGGAQAEAQARAEGQR 214

Query: 208 SRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVT 263
              RL    +     +  +        G+  +L    +H   ++          +     
Sbjct: 215 VLQRLKTGEDFGAVAKAVSRGPSAEEGGELGWLKRGTIHRTLEDAAFALKTGEMSGLVEA 274

Query: 264 QKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             GV  + + ++R          +  +  +    + E +  +YV +LR +A+I
Sbjct: 275 GPGVHILKVEERRRGGGKSFEQARDEIRQRLGEEQAENYRQQYVAELRRDALI 327


>gi|326794311|ref|YP_004312131.1| Chaperone surA [Marinomonas mediterranea MMB-1]
 gi|326545075|gb|ADZ90295.1| Chaperone surA [Marinomonas mediterranea MMB-1]
          Length = 419

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 39/306 (12%), Positives = 102/306 (33%), Gaps = 10/306 (3%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI----NG 70
           +   + +L I   +    + +  +   +   ++ + + + DI+ R  ++K +        
Sbjct: 2   MKKLFLLLSIVVTMNSPLFAAPKLLDGVVAIVDSQPLLESDINTRFQVIKDRIPGGVMTA 61

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
            + +  + +LI ET++    ++ GI       +   +  A+            L +QGI 
Sbjct: 62  GIRRQILNQLIEETVQINYGKRLGIRIPQENTDAAVLNVAQKFSTDLGGLKQLLSRQGID 121

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
            + ++Q +  + +   V +     +    E EI       +N    +  +      +   
Sbjct: 122 YSRYRQQIENEILINAVKQRVIKDRISITEQEISDFISASQNTQSSKNELHLRHIIVRAK 181

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL 250
                    K+I     S        N+   ++     +  G   +   S L   F   +
Sbjct: 182 NETEALAKIKQIASGIASENDF---INQAITYSDGQFALEGGDLGWRPVSQLPALFTKAI 238

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK---AYLSAQNTPTKIEKHEAEYVKK 307
              +     P  +  G   + + +KR    ++  +    ++  Q    + E+     + +
Sbjct: 239 NTQKGPLIGPLKSNAGYHLLWVIEKRSANVQLQAQTKTRHILLQPNEIRTEQQTVALINE 298

Query: 308 LRSNAI 313
           L   A+
Sbjct: 299 LYKRAM 304



 Score = 89.3 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/267 (11%), Positives = 80/267 (29%), Gaps = 7/267 (2%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           IT+ +IS  I+    Q       ++ ++ +IV    + E         S   +     + 
Sbjct: 149 ITEQEISDFIS--ASQNTQSSKNELHLRHIIVRAKNETEALAKIKQIASGIASENDFINQ 206

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
             T    +      D      +                         N    +    +K 
Sbjct: 207 AITYSDGQFALEGGDLGWRPVSQLPALFTKAINTQK--GPLIGPLKSNAGYHLLWVIEKR 264

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDV 229
                 +   +T    +  N+++ +      I +  +  +          +++      +
Sbjct: 265 SANVQLQAQTKTRHILLQPNEIRTEQQTVALINELYKRAMSGEDFAGLASEYSDDQGSTL 324

Query: 230 SIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK-AY 287
             G   ++    + P F+ ++        + P+ +Q G   + + D+R      ++K   
Sbjct: 325 QGGDLGWVKLGMMVPAFEKVMTATKTGAVSKPFRSQFGWHILKVEDRRKEDISESVKQQQ 384

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAII 314
                   K +   + ++ +L+ +A I
Sbjct: 385 AEKALVAQKQDFVLSNWLDELKESAFI 411


>gi|222085450|ref|YP_002543980.1| peptidyl-prolyl cis-trans isomerase protein [Agrobacterium
           radiobacter K84]
 gi|221722898|gb|ACM26054.1| peptidyl-prolyl cis-trans isomerase protein [Agrobacterium
           radiobacter K84]
          Length = 316

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 88/308 (28%), Positives = 151/308 (49%), Gaps = 4/308 (1%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           ++ +      +I     + S      +S ++  +N  VIT GDI+KRI  LKLQ   G+L
Sbjct: 8   MRAVLFGAAALIMATFAMPSSDVAFAASEVKVVVNNSVITSGDIAKRINFLKLQHQKGDL 67

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            K+A ++L+ ETLK+ EI +  ++  ++ V+  F + A +  +S +     LDK G+G +
Sbjct: 68  NKLAQEQLVDETLKRAEISRVRMSVSTSDVDSAFGRFAASNKMSPQQLGQILDKMGVGVD 127

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
           HFK Y+A+   WP VV   F    GN         +  +N T        +   +     
Sbjct: 128 HFKSYIAVSMSWPRVVNARFGSSGGNKLSNDDLVTRMTENKTKPVTTEYFLKQIVFVVPQ 187

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
             +  +  + K   E+       C++ + FA+ + DVS+     +L  DL   ++ LL++
Sbjct: 188 AKRNAILNQRKSEAEASRAKFPGCDQAKVFAATMRDVSVQDLGRVLAPDLPEIWKPLLEQ 247

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE----AEYVKKL 308
           ++ NTT P VT +GVEY+AIC +R +  ++A  A   A++      +       +Y+ +L
Sbjct: 248 AKGNTTTPVVTDRGVEYVAICSQRQVNDDVAAAAVFRAEDIGKAGAQGISANDKKYMDEL 307

Query: 309 RSNAIIHY 316
           RS A I Y
Sbjct: 308 RSKAQILY 315


>gi|198284724|ref|YP_002221045.1| SurA domain [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|198249245|gb|ACH84838.1| SurA domain [Acidithiobacillus ferrooxidans ATCC 53993]
          Length = 477

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 101/290 (34%), Gaps = 13/290 (4%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE---------LEKIAVQELIVET 84
           ++     ++   +N  +IT   + +R+  ++ +              L +  +Q++I++ 
Sbjct: 66  QNTQNLDKVVAVVNDNIITSMQLEQRVGAVRARLQTQNPNAMPPEDILRRQVLQQMILQD 125

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
           ++ Q   ++GI  D  T++      A+   L+ +     L  QG     F   L  + + 
Sbjct: 126 IELQIAHRAGIKVDKATLDQAISNLAQANHLTPDQLRQALANQGQSWERFTHDLEDRILV 185

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
             +++ +   +      E+    Q++K +    + ++ +   +PDN   +     +R  +
Sbjct: 186 DRLMQQEVENRVHIGPDEVKTFAQQLKEMGGVSFDLQQIFIPLPDNPTPDAVGAARRDAE 245

Query: 205 A-EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYV 262
              +  L   +      + +S    +  G+  ++   +L P      L+      +    
Sbjct: 246 QARDHVLAGERFGRVATQVSSGRDALQGGRLGWIKAGELPPAVAQTLLQLKVGEISPVIP 305

Query: 263 TQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
              G     + D +           A +  +   +   +      + ++ 
Sbjct: 306 GPTGFHIFKLLDVKHGQPTVTEVKTAMIVLRAGNSLQLQEAEARAQDIQQ 355



 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 13/123 (10%), Positives = 39/123 (31%), Gaps = 3/123 (2%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKS 253
              + R +D +++     +       ++       + G+  ++    L    +   L   
Sbjct: 344 QEAEARAQDIQQALQSGTRFSELARSYSQDPRTAANGGEMGWVAPGQLPDSLERTLLTLQ 403

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEI-ALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
               ++P      +  +    +R    E   + A    Q     + +   E+ +++R  A
Sbjct: 404 PGGVSSPIRVGNAIYILHSQAQRQQAVEEKQIMAAARMQLYNRIVHERMDEWQRRIRDGA 463

Query: 313 IIH 315
            + 
Sbjct: 464 YVE 466


>gi|260767121|ref|ZP_05876066.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio furnissii CIP
           102972]
 gi|260617876|gb|EEX43050.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio furnissii CIP
           102972]
 gi|315181264|gb|ADT88178.1| survival protein SurA [Vibrio furnissii NCTC 11218]
          Length = 431

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 106/307 (34%), Gaps = 12/307 (3%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +KL     + ++  +   +         R+   +N  VI   DI   +  +K        
Sbjct: 1   MKLWKHTLLTLLGLMSIGLVQAQPVEMDRVAVIVNNGVILQSDIDTALLSVKANAKKNNR 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L +  V++LI++TL++QE E+ G+  D N +N      A+    +AE     +
Sbjct: 61  ALPDEAVLREQVVEKLIIDTLQQQEAERIGVRIDDNRLNEAINDIAKENHQTAEQLRVSV 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
             +G+    F++ +  +    +        +   L  E+      +   T      +   
Sbjct: 121 AAEGLTYPEFREQIRKEMSASEARNALVRRRINILPAEVNTLADLLAKETNATIQYKISH 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             +  N  Q++  V+ + K   E   +          ++     +  G   ++ + ++  
Sbjct: 181 IQLRFNDGQDKSEVEAQAKKLVEQLNKGADFSTMAITYSKGPKALDGGDWGWMRKEEMPT 240

Query: 245 QFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKH 300
            F +    +++     P+ +  G   + I D +    +        ++  + T    +  
Sbjct: 241 IFADQIKMQNKGTIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTIILSDDG 300

Query: 301 EAEYVKK 307
             + + +
Sbjct: 301 AQKQLNE 307



 Score = 79.3 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/269 (11%), Positives = 78/269 (28%), Gaps = 4/269 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   +++    LL  +       KI+  +L     + +   ++        +N       
Sbjct: 154 ILPAEVNTLADLLAKETNATIQYKISHIQLRFNDGQDKSEVEAQAKKLVEQLNKGADFST 213

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                S    +      G         +    I               +   I       
Sbjct: 214 MAITYSKGPKALDGGDWGWMRKEEMPTIFADQIKMQNKGTIIGPFRSGVGFHILKIDDVK 273

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC-NKLEKFASKI-HD 228
              TV    +      I    + +    QK++ +                ++++      
Sbjct: 274 GLETVAVTEVNARHILIKPTIILSDDGAQKQLNEFVRRIQAGEATFGELAQQYSQDPGSA 333

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKA 286
              G+  Y       P+F++ ++       + P+ T  G   + + D+R++   + ALK 
Sbjct: 334 AQNGELGYQTPDLYVPEFKHQVETLPVGQISQPFKTVHGWHIVEVLDRREVDRTDSALKN 393

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                    K  +  + ++++LR+ A + 
Sbjct: 394 KAYRILFSRKFNEEASAWLQELRAGAFVE 422


>gi|86160750|ref|YP_467535.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85777261|gb|ABC84098.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 338

 Score =  132 bits (331), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 96/293 (32%), Gaps = 18/293 (6%)

Query: 40  SRIRTTINGEVITDGDISKRIALL------------KLQKINGELEKIAVQELIVETLKK 87
            R+   +NG+V+T  ++ +R A L            +  +   E  + A  +++ + L  
Sbjct: 37  DRVAAIVNGDVVTLQELEQRAAALGLAAADALPAGPERDRARAEALRRAFDQVVSDKLFA 96

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           ++ ++  I      V+       +  G +     S L  +G     ++  +  +     +
Sbjct: 97  EKAKELEIEVTEKQVDDAIEGVKKQNGFTDAQLESALASEGYSMADYRTRIRRELQNFSL 156

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK---LQNQGFVQKRIKD 204
           ++     K    E ++    Q        E  +R     IP  +    Q Q   +   + 
Sbjct: 157 LQYKVAGKIKTSEEDLRNYYQSHPQEFDGEDEVRVRHIFIPFPEGGGKQAQAQARAEGQR 216

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVT 263
             +            +  +        G+  +L    +H   ++          +     
Sbjct: 217 VLQRLKTGEDFGAVAKAVSRGPSAEEGGELGWLKRGTIHRTLEDAAFALKTGEISGLVEA 276

Query: 264 QKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             GV  + + ++R          +  +  +    + E +  +YV +LR +A+I
Sbjct: 277 GPGVHILKVEERRRGGGKSFEQAREEIRQRLGEEQAENYRQQYVAELRRDALI 329


>gi|329122338|ref|ZP_08250925.1| peptidyl-prolyl cis-trans isomerase [Haemophilus aegyptius ATCC
           11116]
 gi|327473620|gb|EGF19039.1| peptidyl-prolyl cis-trans isomerase [Haemophilus aegyptius ATCC
           11116]
          Length = 313

 Score =  132 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 57/318 (17%), Positives = 116/318 (36%), Gaps = 20/318 (6%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMS-SRIRTTINGEVITDGDISKRIALLKLQKINGE 71
           +K+        +   +  V++ S A +  R+  T++G  I +  +       +       
Sbjct: 1   MKMKKFVLRSFLLAALGCVAFASMAQAGERVVATVDGIPILESQV-------RANMGKKG 53

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
             + A+ ++I + L ++ +++SG+  D   +++     A   GL+   F   LD QGI  
Sbjct: 54  DRQSAIDKIIDDILVQKAVQESGVKIDPREIDHIVEDTAARNGLTYGQFLDALDYQGISL 113

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI----------PANKQKMKNITVREYLIR 181
           N F+Q +A Q +   V              E+             K   + +  +EY +R
Sbjct: 114 NTFRQQIANQMVMGAVRNKAIQESIDVTREEVVALGQKMLEEAKEKGTAQKVMGKEYEVR 173

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY-LLES 240
            +L  +       Q   Q     ++    +       L+     +   + G   Y   E+
Sbjct: 174 HILLKLNPLLNDAQAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPET 233

Query: 241 DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEK 299
                 Q ++K  Q   + P+ T+ G   + +   RD              +   T+++ 
Sbjct: 234 YAPQFAQTVVKSKQGVISAPFKTEFGWHILEVTGVRDGDLTAEAYTQKAYERLVNTQLQD 293

Query: 300 HEAEYVKKLRSNAIIHYY 317
              ++VK LR  A I Y+
Sbjct: 294 ATNDWVKALRKRANIQYF 311


>gi|52424684|ref|YP_087821.1| SurA protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306736|gb|AAU37236.1| SurA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 353

 Score =  132 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 41/328 (12%), Positives = 106/328 (32%), Gaps = 16/328 (4%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYK-SWAMSSRIRTTINGEVITDGDISKRI 60
             +   + ++ I +       ++  ++ + +   +     ++  T++G  I +  + +  
Sbjct: 26  NERNLLNFNNGIMMKPGNLKSLLLVMIGMFAVSVNVQAVEQVVATVDGTPILESQLKRA- 84

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             L  Q  N      A+ ++I + L ++ ++++ +      ++      A    ++    
Sbjct: 85  --LGKQANNATNRAKALDKIIDDMLVQKAVKEANVHISEGQLDKIVENIAAQNNMTYGQL 142

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE--- 177
              LD QGIG   F+  +  Q +  +V              ++    ++M      +   
Sbjct: 143 LDALDYQGIGITKFRNNIRNQLMMAEVRNRSIGKNIDVTREQVETLSKQMLEQAKTQGKK 202

Query: 178 ------YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVS 230
                       +    +  L +     +  +   + +          + ++       +
Sbjct: 203 AQVTGTEYQVRHILLKLNPLLNDAQAKAQLNQICSDIQSGKTTFAAAAKDYSKDYLSGAN 262

Query: 231 IGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-L 288
            G   Y       P F Q +    +   + P+ TQ G   + + D R      A      
Sbjct: 263 GGDLGYAFPEIYDPAFGQVIKATKKGVISAPFKTQFGWHILEVTDTRQGDMTEAAYRQKA 322

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                  +++    ++VK LR  A I Y
Sbjct: 323 YETLVNQQLQDDAKDWVKALRKGAEIKY 350


>gi|53805075|ref|YP_113118.1| peptidyl-prolyl cis-trans isomerase SurA [Methylococcus capsulatus
           str. Bath]
 gi|81682783|sp|Q60B78|SURA_METCA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|53758836|gb|AAU93127.1| peptidyl-prolyl cis-trans isomerase SurA [Methylococcus capsulatus
           str. Bath]
          Length = 454

 Score =  132 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 36/312 (11%), Positives = 102/312 (32%), Gaps = 18/312 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGEL 72
           +  +     +    + A   RI   ++  VI + ++ +++  +K            +  L
Sbjct: 12  LGALALFAVVCWSMADAAVDRIVAVVDDGVILESELVRKVDEIKRSLRASRASLPPDSVL 71

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            +  ++ +IV+ ++ Q  EK GI  D +T+     Q A+   L+ + F   L ++GI   
Sbjct: 72  VRQVLERMIVDKIQIQMAEKMGIQVDDDTLRMAVSQIAQRNNLTPDQFRRSLAREGIDYG 131

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV----REYLIRTVLFSIP 188
            F   +  +     +  +    +    + E+    +              L   ++ +  
Sbjct: 132 DFLDQVRSEIAMGRLRASQINNQIKISDREVEHYLEAQGGSGAVADREYRLGHILIATPR 191

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-Q 247
           +         ++R     +         +   +++     +  G   +   S++     +
Sbjct: 192 EASPDEVKKARERADRVVKELKAGLDFKDASIRYSDDPQALEGGDLGWRKLSEIPSHIAE 251

Query: 248 NLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNT---PTKIEKHEAEY 304
            +        ++P  +  G   + +   R +G     K ++            ++     
Sbjct: 252 VVGGMKDGEVSDPIRSPGGYHIVKMLAMRGVGEAKLTKTHVRHILIRPNEVLSDEDAKNK 311

Query: 305 VKKLRSNAIIHY 316
           +  L++   I  
Sbjct: 312 LLALKTR--IEN 321



 Score = 94.0 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 48/139 (34%), Gaps = 3/139 (2%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLE 239
                 I  N++ +    + ++   +                +      +  G   ++  
Sbjct: 291 HVRHILIRPNEVLSDEDAKNKLLALKTRIENGDDFAELARGHSDDKGSAIKGGDLGWVKP 350

Query: 240 SDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAYLSAQNTPTKI 297
             L P F+  +    +N  ++P  TQ G   I + ++++       LK     +    K+
Sbjct: 351 GALVPPFEEAMNALDENQLSDPVQTQFGWHLIQVLERQESSDTNEVLKNRARDELFKRKV 410

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           ++    +++K+R  A +  
Sbjct: 411 DEETELWLRKIRDEAYVEI 429


>gi|90416848|ref|ZP_01224777.1| peptidyl-prolyl cis-trans isomerase SurA [marine gamma
           proteobacterium HTCC2207]
 gi|90331195|gb|EAS46439.1| peptidyl-prolyl cis-trans isomerase SurA [marine gamma
           proteobacterium HTCC2207]
          Length = 434

 Score =  132 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 34/317 (10%), Positives = 104/317 (32%), Gaps = 15/317 (4%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
             K   T  + ++     + +     +  ++   ++ +V+ + ++ +R+A +  Q     
Sbjct: 3   LKKTCNTALLAVLLGAFSVTASAQIEILDKVVAIVDEDVVLESEVQRRLATIYAQIQQSG 62

Query: 72  LE--------KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
            +        +  ++ LI E L+      +GI      +N    + A++  L+ E ++  
Sbjct: 63  TQPPPQEIIVQQVLERLISERLQLNMGYSAGIRITDAELNDAMARIAKSNQLTMEQYAEQ 122

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI--- 180
           +   G   ++ ++ +  + I   V +   M +      E+       +   +    +   
Sbjct: 123 IHATGSTLSNVREEIRNEMILMRVQQGQVMRRIRISNQELDNFLNSEEGRFMTSPDVNVG 182

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
             +L             + +R +   +               ++    +  G   +   +
Sbjct: 183 HILLPVPSGKNTDEVNAILQRAQGILDQANSGTDFRQLAIANSADQTALQGGDLGWRKMA 242

Query: 241 DLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTK 296
            L   F + + K   +  + P  +  G   I + +++   +   E     ++  +    +
Sbjct: 243 QLPGVFIEAVEKLEIDQVSEPIRSDAGYHLIKLYERKGGGEQLIEQHFARHILIKPNQIR 302

Query: 297 IEKHEAEYVKKLRSNAI 313
            E      + +LR    
Sbjct: 303 DEATVVSQLTELRERIK 319



 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 53/146 (36%), Gaps = 3/146 (2%)

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIG 232
                        I  N+++++  V  ++ +  E            ++F+      ++ G
Sbjct: 283 EQLIEQHFARHILIKPNQIRDEATVVSQLTELRERIKAGEDFALLTKEFSEDPGSALNGG 342

Query: 233 KAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLG-GEIALKAYLSA 290
           +  +       P+F+  +     N  + P+++Q G   + + ++R+    E   +     
Sbjct: 343 ELGWSTPGMFVPEFEQTMGSIELNEVSAPFLSQFGWHILQVTERRNQDFSENITRNRAQN 402

Query: 291 QNTPTKIEKHEAEYVKKLRSNAIIHY 316
                K E+    +++++R  A +  
Sbjct: 403 LLRQRKYEEELQVWLQEIRDEAFVEI 428


>gi|146309025|ref|YP_001189490.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina ymp]
 gi|145577226|gb|ABP86758.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina ymp]
          Length = 430

 Score =  132 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 94/287 (32%), Gaps = 15/287 (5%)

Query: 40  SRIRTTINGEVITDGDISKRIALLK--------LQKINGELEKIAVQELIVETLKKQEIE 91
            R+   ++ +V+    +  R+  ++               L +  ++ LI+E ++ Q  E
Sbjct: 31  DRVVAIVDNDVVMQSQLDARLREVQQTIDKRGGALPPEHVLSQQVLERLIIENIQLQIGE 90

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
           +SGI      +N      A+  G+S E F   L + G+     +  +  + I   V +  
Sbjct: 91  RSGIRITDEELNQAMGTIAQRNGMSLEQFRQALARDGLSYADARDQVRREMIISRVRQRR 150

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIR---TVLFSIPDNKLQNQGFVQKRIKDAEES 208
              +    + E+                 R    ++               ++ ++  + 
Sbjct: 151 VAERIQVTDQEVQNFLASDLGKMQLSEEFRLANILIPVSEGASSSEIQAADRQARELYQQ 210

Query: 209 RLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGV 267
             +           ++    +  G+  +     L P F +++ + +    T P  T  G 
Sbjct: 211 LQQGADFAQLAISRSASETALEGGEMGWRKAGQLPPPFDSMISQLNPGEVTEPVRTPGGF 270

Query: 268 EYIAICDKRDLGG---EIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             + + +KR       +     ++  + +  +  +     V++L   
Sbjct: 271 IILKLIEKRGGDTQVRDEVHVRHILIKPSEIRSPEETRRLVERLYQR 317



 Score = 89.0 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 14/138 (10%), Positives = 53/138 (38%), Gaps = 3/138 (2%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
                 I  +++++    ++ ++   +  +         + F+      ++ G   ++  
Sbjct: 290 HVRHILIKPSEIRSPEETRRLVERLYQRIVAGEDFAELAKSFSEDPGSALNGGDLNWIDP 349

Query: 240 SDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-YLSAQNTPTKI 297
           + L P+F+ ++ ++     + P+ TQ G   + +  +R        +    +      K 
Sbjct: 350 NALVPEFRQVMSETASGELSKPFQTQFGWHVLQVMGRRATDSSAQFREQQAANLLRNRKY 409

Query: 298 EKHEAEYVKKLRSNAIIH 315
           ++    +++++R  A + 
Sbjct: 410 DEELQAWLRQIRDEAYVE 427


>gi|289209139|ref|YP_003461205.1| peptidylprolyl isomerase [Thioalkalivibrio sp. K90mix]
 gi|288944770|gb|ADC72469.1| Peptidylprolyl isomerase [Thioalkalivibrio sp. K90mix]
          Length = 475

 Score =  132 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 39/300 (13%), Positives = 94/300 (31%), Gaps = 19/300 (6%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGELEKIAVQELIVETLK 86
               + RI   +  +V+T  ++ +R+ L+  Q             L +  ++ LIVE ++
Sbjct: 66  GDQFTDRILAVVGDDVVTQRELVERMNLVAQQMMERGTRPPDRDTLARQVMERLIVERVQ 125

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
            QE ++ GI  D  T+N      AR   ++       L + G+  N F++ +  +     
Sbjct: 126 LQEAQRVGINIDEMTLNRAMENIARENRMTLPQLRQALLQDGVDFNAFREQIRNELTVNQ 185

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           + +     +    + EI            R    R     +   +  + G +    + A 
Sbjct: 186 LQRRQVDNQIRVSDQEIADLIASESGAIDRGVRYRIAHIQVSLPRGADSGQIATAREKAR 245

Query: 207 ESRLRLPKDCNKLE---KFASKIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYV 262
           E R R+ +  +        +     +  G   +    ++   F            ++   
Sbjct: 246 ELRQRVREGEDFASVAISESDAPDALEGGDLGWRTAGEIPSVFAREAVLMRTGEISDVLR 305

Query: 263 TQKGVEYIAICDKRDLGGEIALKAYLSAQNT-------PTKIEKHEAEYVKKLRSNAIIH 315
           +  G   + + D+         +  +              +  +       ++R  +   
Sbjct: 306 SPNGFHIMKLVDREGGDQTRVRQTQVRHILISPDQVRSDEEARRQAESLYNRIREGSDFE 365



 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 52/157 (33%), Gaps = 3/157 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           I     +      R    +     I  +++++    +++ +                   
Sbjct: 312 IMKLVDREGGDQTRVRQTQVRHILISPDQVRSDEEARRQAESLYNRIREGSDFEALARAN 371

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL-G 279
           +         G+  ++   +L P+F+  +        + P  +Q G   I + D R++  
Sbjct: 372 SDDPGSAAQGGQLGWISPGELVPEFEEAMNALQPGEISEPVESQFGWHIIEVLDHREVDT 431

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
               ++A         K E+    ++++LR  A + Y
Sbjct: 432 SREQIRARAREILQNRKREEEIELWMRRLRDEAYVEY 468


>gi|153009931|ref|YP_001371146.1| SurA domain-containing protein [Ochrobactrum anthropi ATCC 49188]
 gi|151561819|gb|ABS15317.1| SurA domain protein [Ochrobactrum anthropi ATCC 49188]
          Length = 319

 Score =  132 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 72/317 (22%), Positives = 133/317 (41%), Gaps = 8/317 (2%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +  +   F  +L+    L     V + ++ + A  S ++  ++G  IT+ DI  R+A LK
Sbjct: 1   MMIARPLFASMLSAAVCLTTLGTVAVPAFAAGAG-SEVKVIVSGNAITNSDIQHRVAFLK 59

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
           LQ+  G L ++A +EL  E LK+ E++   I      V+  +   A    +S    +  +
Sbjct: 60  LQRKGGNLSQVAKEELTDEMLKRIEMKSRSINITDQQVDEAYAGFASRNKMSLAQLNQLM 119

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           ++ G+  +HFK+Y+ +Q  W  +V   F       E E      K           R   
Sbjct: 120 NQSGVTPDHFKKYIMVQMGWGRLVSARFRATGMVSEQEAVQRMLKDGGKKPVATEYRLQQ 179

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
                   +    +  + K    +     + C+   + A  I DV++     ++E  L  
Sbjct: 180 VIFVIPASKRSPALLSKRKQEANALRSRFQSCDATRQQAKGILDVTVRDLGRIIEQQLPN 239

Query: 245 QF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ------NTPTKI 297
           ++ + +   S   TT P  T+KGVE++A+C  R +  +   +   S +          K 
Sbjct: 240 EWAKAVKATSVGGTTPPQETEKGVEFLAVCSTRQISDDRVAQLVFSMEGADSPAGQEKKA 299

Query: 298 EKHEAEYVKKLRSNAII 314
           E+   +Y+K+LR  A I
Sbjct: 300 EQLSEKYLKELREKATI 316


>gi|309972385|gb|ADO95586.1| Putative survival protein SurA-like protein [Haemophilus influenzae
           R2846]
          Length = 313

 Score =  132 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 109/318 (34%), Gaps = 20/318 (6%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAM-SSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
           +K+        +   +  V++ S A    R+  T++G  I +  +       +       
Sbjct: 1   MKMKKFILKSFLLATLGCVAFTSMAQAEERVVATVDGIPILESQV-------RANMGKKG 53

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
             + A+ ++I + L ++ I++SG+  D   ++      A   GL+   F   LD QGI  
Sbjct: 54  DRQSALDKIIDDLLVQKAIQESGVKIDPREIDRVVEDTAARNGLTYGQFLDALDYQGISL 113

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI---------PANKQKMKNITVREYLIRT 182
           N F+Q +A Q +   V              E+          A  Q        +     
Sbjct: 114 NTFRQQIANQMVMGAVRNKAIQESIDVTREEVVALGQKMLDEAKSQGTAQKVTGKEYEVR 173

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQY-LLES 240
            +    +  L +    ++  K   +         +   K++       + G   Y   E+
Sbjct: 174 HILLKLNPLLNDAQAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPET 233

Query: 241 DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEK 299
                 Q ++K  Q   + P+ T+ G   + +    D              +   T+++ 
Sbjct: 234 YAPQFAQTVMKSKQGVISAPFKTEFGWHILEVTGVSDGDLTAEAYTQKAYERLVNTQLQD 293

Query: 300 HEAEYVKKLRSNAIIHYY 317
              ++VK LR  A I Y+
Sbjct: 294 ATNDWVKALRKRANIQYF 311


>gi|16272406|ref|NP_438619.1| stationary-phase survival protein SurA [Haemophilus influenzae Rd
           KW20]
 gi|260580479|ref|ZP_05848307.1| stationary-phase survival protein SurA [Haemophilus influenzae
           RdAW]
 gi|1174486|sp|P44721|SURA_HAEIN RecName: Full=Chaperone surA homolog; Flags: Precursor
 gi|1573432|gb|AAC22116.1| stationary phase survival protein SurA, putative [Haemophilus
           influenzae Rd KW20]
 gi|260092821|gb|EEW76756.1| stationary-phase survival protein SurA [Haemophilus influenzae
           RdAW]
          Length = 313

 Score =  132 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 53/318 (16%), Positives = 111/318 (34%), Gaps = 20/318 (6%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAM-SSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
           +K+        +   +  V++ S A    R+  T++G  + +  +       +       
Sbjct: 1   MKMKKFVLRSFLLATLGCVAFTSMAQAEERVVATVDGIPVLESQV-------RANMGKKG 53

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
             + A+ ++I + L ++ +++SG+  D   +++     A   GL+   F   LD QGI  
Sbjct: 54  DRQSAIDKIIDDILVQKAVQESGVKIDPREIDHIVEDTAARNGLTYGQFLDALDYQGISL 113

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI---------PANKQKMKNITVREYLIRT 182
           N F+Q +A Q +   V              E+          A  Q        +     
Sbjct: 114 NTFRQQIANQMVMGAVRNKAIQESIDVTREEVVALGQKMLDEAKSQGTAQKVTGKEYEVR 173

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQY-LLES 240
            +    +  L +    ++  K   +         +   K++       + G   Y   E+
Sbjct: 174 HILLKLNPLLNDAQAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPET 233

Query: 241 DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEK 299
                 Q ++K  Q   + P+ T+ G   + +   RD              +   T+++ 
Sbjct: 234 YAPQFAQTVVKSKQGVISAPFKTEFGWHILEVTGVRDGDLTAEAYTQKAYERLVNTQLQD 293

Query: 300 HEAEYVKKLRSNAIIHYY 317
              ++VK LR  A I Y+
Sbjct: 294 ATNDWVKALRKRANIQYF 311


>gi|258627055|ref|ZP_05721853.1| survival protein SurA [Vibrio mimicus VM603]
 gi|258580729|gb|EEW05680.1| survival protein SurA [Vibrio mimicus VM603]
          Length = 431

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/313 (12%), Positives = 107/313 (34%), Gaps = 12/313 (3%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +KL     + +I  +    ++        +   +N  VI   D+   +  +K        
Sbjct: 1   MKLWKPTLISVISALTLFNAHAEPEQLDGVAVIVNSGVILQSDVDGALKTVKANAKQNNQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L +  +++LI++TL++QE E+ G+  D N +N    + A+N   + E   S +
Sbjct: 61  PLPQETVLREQVLEKLIIDTLQQQEAERIGVKIDDNRLNDAIKEIAKNNQQTQEQLISSV 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            ++G+    F++ +  +    D        +   L  E+    + +   T      +   
Sbjct: 121 AQEGLTYPEFREQVRKEMAASDARNALVRRRINILPAEVDTLAELLAQETDATVQYKISH 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             +   + Q++   +                      ++     +  G   ++ + ++  
Sbjct: 181 IQLRVEEGQDKSEAESLANKLVGELKHGADFAQMAYTYSKGPKALQGGDWGWMRKEEMPT 240

Query: 245 QFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKH 300
            F +    +++ +   P+ +  G   + I D +    +        ++  + T    ++ 
Sbjct: 241 IFADQIKMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTIILSDEG 300

Query: 301 EAEYVKKLRSNAI 313
             + + +      
Sbjct: 301 AQKQLNEFVQRIK 313



 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 82/269 (30%), Gaps = 4/269 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++     LL  +       KI+  +L VE  + +   +S        + +      
Sbjct: 154 ILPAEVDTLAELLAQETDATVQYKISHIQLRVEEGQDKSEAESLANKLVGELKHGADFAQ 213

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                S    +      G         +    I      +        +   I       
Sbjct: 214 MAYTYSKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIDDVK 273

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC-NKLEKFASKI-HD 228
              TV    +      I    + +    QK++ +  +             ++++      
Sbjct: 274 GLETVAVTEVNARHILIKPTIILSDEGAQKQLNEFVQRIKNGEATFGELAQQYSQDPGSA 333

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKA 286
              G+  Y       P+F++ ++       + P+ T  G   + + D+R++   + ALK 
Sbjct: 334 AQKGELGYQTPDLYVPEFKHQIEILPVGQISEPFQTVHGWHIVEVLDRREVDRTDSALKN 393

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                    K  +  + ++++LR++A + 
Sbjct: 394 KAYRILFNRKFNEEASAWLQELRASAFVE 422


>gi|86160749|ref|YP_467534.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85777260|gb|ABC84097.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 317

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/310 (11%), Positives = 87/310 (28%), Gaps = 19/310 (6%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE---- 71
           +     L   C     +      +      +NGE I    +++ +   +           
Sbjct: 8   ILIATALAAGCGRCGGARSGERPAPGAVAVVNGEPIPPDALARELRDAQAGAEGQAPAAG 67

Query: 72  --LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
             L +  + +L+   L  Q+     I    + V   F++           F   L ++ +
Sbjct: 68  DVLRRRVLDDLVDRALLLQQARARSIVVGQDQVERAFLRLRAE--YPGTHFDDLLAQERL 125

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                K  L  Q     + + +   +   ++ E+     +          +  +   +  
Sbjct: 126 SQAELKARLKDQLTVERLFEQEVFPQVQVVDAEVERYYAEHGAEFQEPERVHVLQIVV-- 183

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD-LHPQFQN 248
                    ++  +  E+ R           + +        G   ++         F  
Sbjct: 184 ------ASREEAAQVREKLRRNPQTFAEVARRSSIAPEGKGGGDLGFIGRGSGFPEVFDT 237

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVK 306
                 N  ++   +  G     + +K+          +A ++ +    K    +AEY++
Sbjct: 238 CFALPVNVISDVTPSPYGFHLFKVVEKKPAQRRTLEQARAEIAEKLGREKRAGAQAEYLE 297

Query: 307 KLRSNAIIHY 316
            LR  A I  
Sbjct: 298 ALRKRAQIEI 307


>gi|237749066|ref|ZP_04579546.1| chaperone SurA [Oxalobacter formigenes OXCC13]
 gi|229380428|gb|EEO30519.1| chaperone SurA [Oxalobacter formigenes OXCC13]
          Length = 459

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/326 (11%), Positives = 95/326 (29%), Gaps = 33/326 (10%)

Query: 19  YFVLIIFCIVPIVSYKSWAMS--------SRIRTTINGEVITDGDISKRIALLKLQKING 70
             +L                +          I   +N +VIT G++++R+ L++ Q    
Sbjct: 16  ALILAFGVFFSATVLAQDNQAQPSKQVVVDSIAAIVNSDVITKGELNERVTLVEAQLKQQ 75

Query: 71  EL--------EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
            +        +K  ++ +IVE  + Q  +  G+  D   ++      A    +S   F  
Sbjct: 76  NIALPPRTEFQKQVLEHMIVERAQLQLAKDMGLRVDDTQLDRTIALMAEQNHMSLAQFKR 135

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE--YLI 180
             ++ G     F++ +  +     +   + + K    + E+         + + E   L 
Sbjct: 136 QTEQNGTPFEKFREKVREEITMSRLRDREVVNKIQINDAEVDNLLGADSQLQMPEQLRLG 195

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
             ++    +   +     + R +   +              ++     +S G   +    
Sbjct: 196 HILIRIPENASPEQIAEKRARAEKVLDVLKSGGDFQQTAASYSDADEGLSGGDIGWRSTD 255

Query: 241 DLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL--------------GGEIALK 285
            L   F   L      N T    +  G   + + D+R +                +    
Sbjct: 256 RLPKSFVDALAGVKPGNVTGIIKSPNGFHILKVLDRRKMTNGAESVASASDKNTVQQIHA 315

Query: 286 AYLSAQNTPTKIEKHEAEYVKKLRSN 311
            ++  +             +  LR  
Sbjct: 316 RHILIKVNQLVSADEAKRKLIDLRQR 341



 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 48/147 (32%), Gaps = 2/147 (1%)

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
           +    + +    +    +  +      +K I   +    +        + +++       
Sbjct: 306 DKNTVQQIHARHILIKVNQLVSADEAKRKLIDLRQRIINKSATFEELAKTYSNDGSASRG 365

Query: 232 GKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LS 289
           G   ++   D  P+F+  +        + P  TQ G   I + DK+        K     
Sbjct: 366 GDLGWIYPGDTVPEFEKAMVALKPGEISEPIETQFGFHLIQVLDKKTDDVSAERKRIAAK 425

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                 K+ +   E++++LR  A + Y
Sbjct: 426 QALRERKVAEATEEWLRQLRDKAYVEY 452


>gi|269137960|ref|YP_003294660.1| peptidyl-prolyl cis-trans isomerase SurA [Edwardsiella tarda
           EIB202]
 gi|267983620|gb|ACY83449.1| peptidyl-prolyl cis-trans isomerase SurA [Edwardsiella tarda
           EIB202]
 gi|304558008|gb|ADM40672.1| Survival protein SurA precursor [Edwardsiella tarda FL6-60]
          Length = 435

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/310 (12%), Positives = 114/310 (36%), Gaps = 18/310 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------L 72
           +++   +    ++ +  +  ++   ++  V+ + D+   +  +KL     +        L
Sbjct: 7   LILGVALCANTAFAAPQVVDKVVAIVDNGVVLESDVDGMMKSVKLNAQQADQQLPDNATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ ++ Q  ++ G+    + ++      A+   +S +   S L   G+   
Sbjct: 67  RHQILERLIMDNVQLQMAKRMGLEISDSELDNAINGIAQQNHISMQQLRSRLAADGLDYK 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + +  +V  N+   +   L  E+ A  +++ +    E  +      IP  + 
Sbjct: 127 TYRAQIRKEMLISEVRNNEVRRRVTILPQEVDALAKQIGSQNSGETAVNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAE---ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
             Q  V +  + AE   +   +          +++    +  G+  +    +L   F + 
Sbjct: 187 PTQQQVSEAQQQAESLIQQLHQGASFAKLAAAYSADPQALKGGEMGWGRLQELPTLFAEA 246

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
           L    + +   P  +  G   + + D R    ++        ++  + +P   +      
Sbjct: 247 LQSAKKGDIVGPIRSGVGFHILRVNDLRGDQANVSVTEVHARHILLRTSPVMSDAQARAK 306

Query: 305 VKKLRSNAII 314
           ++ L  +A I
Sbjct: 307 LEAL--SAQI 314



 Score = 87.8 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 81/285 (28%), Gaps = 17/285 (5%)

Query: 47  NGEV-----ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           N EV     I   ++      +  Q        ++   LI       + + S     + +
Sbjct: 143 NNEVRRRVTILPQEVDALAKQIGSQNSGETAVNLS-HILIPLPENPTQQQVSEAQQQAES 201

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-------FML 154
           +     Q A    L+A   +     +G      +           +              
Sbjct: 202 LIQQLHQGASFAKLAAAYSADPQALKGGEMGWGRLQELPTLFAEALQSAKKGDIVGPIRS 261

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
             G   + +   +    N++V E   R +L          Q    K    + +       
Sbjct: 262 GVGFHILRVNDLRGDQANVSVTEVHARHILLRTSPVMSDAQA-RAKLEALSAQITSGKIT 320

Query: 215 DCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAI 272
                ++++         G   + + S   P F++  +K ++   + P  +  G   I +
Sbjct: 321 FEQAAKEYSQDPGSAQKGGDLGWAVPSMYDPAFRDALMKLNKGEISQPVHSNFGWHLIQL 380

Query: 273 CDKRDLG-GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
              R +   + A K          K  +    ++++ R+ A +  
Sbjct: 381 LGTRQVDRTDEAQKERAYRMLFNRKFAEEAQTWLQEQRAAAYVKI 425


>gi|260582276|ref|ZP_05850069.1| stationary-phase survival protein SurA [Haemophilus influenzae
           NT127]
 gi|260094644|gb|EEW78539.1| stationary-phase survival protein SurA [Haemophilus influenzae
           NT127]
          Length = 313

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/318 (17%), Positives = 115/318 (36%), Gaps = 20/318 (6%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAM-SSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
           +K+        +   +  V++ S A    R+  T++G  I +  +       +       
Sbjct: 1   MKMKKFILKSFLLATLGCVAFTSMAQAEERVVATVDGIPILESQV-------RANMGKKG 53

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
             + A+ ++I + L ++ +++SG+  D   +++     A   GL+   F   LD QGI  
Sbjct: 54  DRQSAIDKIIDDILVQKAVQESGVKIDPREIDHIVEDTAARNGLTYGQFLDALDYQGISL 113

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI----------PANKQKMKNITVREYLIR 181
           N F+Q +A Q +   V              E+             K   + +  +EY +R
Sbjct: 114 NTFRQQIANQMVMGAVRNKAIQESIDVTRAEVVALGQKMLEEAKEKGTAQKVMGKEYEVR 173

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY-LLES 240
            +L  +       Q   Q     ++    +       L+     +   + G   Y   E+
Sbjct: 174 HILLKLNPLLNDAQAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPET 233

Query: 241 DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEK 299
                 Q ++K  Q   + P+ T+ G   + +   RD              +   T+++ 
Sbjct: 234 YAPQFAQTVVKSKQGVISAPFKTEFGWHILEVTGVRDGDLTAEAYTQKAYERLVNTQLQD 293

Query: 300 HEAEYVKKLRSNAIIHYY 317
              ++VK LR  A I Y+
Sbjct: 294 ATNDWVKALRKRANIQYF 311


>gi|120556415|ref|YP_960766.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinobacter
           aquaeolei VT8]
 gi|120326264|gb|ABM20579.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinobacter
           aquaeolei VT8]
          Length = 447

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/325 (13%), Positives = 115/325 (35%), Gaps = 20/325 (6%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK- 67
           +   ++   T  + +   ++ + +     +  R+   ++ EVI   ++  RI  +  +  
Sbjct: 1   MKATVRHGLTILLTLAMVVLSVTAQAERKLLDRVVAIVDDEVILQSELDARINTIVGRLS 60

Query: 68  -------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
                      LE+  + +LI E+L+ Q  ++ G+    N +N      AR+ G++  +F
Sbjct: 61  AQGTGLPPRELLEQRVLDQLIQESLQLQMADQMGMRISDNELNETLANIARSNGMTLAEF 120

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
              L ++G+     ++ +  + +   V +     +    + E+    Q  +     +   
Sbjct: 121 EGQLAEEGVTYQQAREQIRNEMLTSRVQQRRVGNRVRVTDREVENYLQAQQANGSTDAEY 180

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYL 237
           R     I  +   ++  V +  + A+  R ++    +        +   + +  G   + 
Sbjct: 181 RLAYIFIEVDDPASEASVDEARETAQALRQQIANGRDFREVAVAESDASNALEGGDMGWR 240

Query: 238 LESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPT 295
            ES L      ++        +       G   + + DKR    +  ++ + +       
Sbjct: 241 SESQLPSLVAPVVPDLEVGEPSQVLENNSGFHLVMVMDKRGGEQQQFIQQHRVRHILVRP 300

Query: 296 -------KIEKHEAEYVKKLRSNAI 313
                  + E+   E  ++L+  A 
Sbjct: 301 SEAVTDVQAEQRIREIYQQLQDGAD 325



 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/286 (9%), Positives = 82/286 (28%), Gaps = 20/286 (6%)

Query: 45  TINGEV-ITDGDISKRIALLKLQKING----------ELEKIAVQELIVETLKKQEIEKS 93
            +   V +TD ++   +   +                E++  A +  + E  +  +  + 
Sbjct: 151 RVGNRVRVTDREVENYLQAQQANGSTDAEYRLAYIFIEVDDPASEASVDEARETAQALRQ 210

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
            I    +       +   +  L   D     + Q                   V++N+  
Sbjct: 211 QIANGRDFREVAVAESDASNALEGGDMGWRSESQLPSLVAPVVPDLEVGEPSQVLENNSG 270

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                +  +      +           R     +  ++       ++RI++  +      
Sbjct: 271 FHLVMVMDK------RGGEQQQFIQQHRVRHILVRPSEAVTDVQAEQRIREIYQQLQDGA 324

Query: 214 KDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIA 271
              +   + +         G   ++    + P F+  + ++Q      P+ +Q G   + 
Sbjct: 325 DFADLARERSDDPVSGSDGGNLGWVSPGQMVPAFEEAMNQAQVGEYFGPFRSQFGWHILQ 384

Query: 272 ICDKRDLGGEIALKA-YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           + ++R        +           K E     +++++R  A + +
Sbjct: 385 VEERRRQDVTEQNRESQARQAIYMRKFELELQNWLREIRDEAFVEF 430


>gi|329119266|ref|ZP_08247953.1| sura/ppiase domain protein [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464613|gb|EGF10911.1| sura/ppiase domain protein [Neisseria bacilliformis ATCC BAA-1200]
          Length = 321

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 94/289 (32%), Gaps = 14/289 (4%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKI------NGELEKIAVQELIVETLKKQEIEKS 93
             I       VIT   +    A  +            EL +  + +L+   L  Q  ++ 
Sbjct: 29  DGIAAVAGDAVITVRQLDNAAAAARQSIPAAQRPSENELRRHILAQLVNRALVVQAGKRR 88

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
           GIT      +      A     + E+  +   K GI     ++  A   I   V +   +
Sbjct: 89  GITASEAETDEALAHAAAQKHTTVENLYAQNAKNGISRATLRKDTAEGIIAEKVRQQAIL 148

Query: 154 LKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
            +    + E+ A  ++ K               R     I   K       +  I+  + 
Sbjct: 149 QQARVSDAEVDAAIERAKQQGITLPAGKPVRQYRARHILIKAEKDNALASAESVIRKIQN 208

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKG 266
                    +  ++++        G   +  +  + P+F++ +KK  +   + P  TQ G
Sbjct: 209 QAKAGRDFGDLAKQYSQDTSAAQGGDLGWFGDGVMVPEFEDAVKKLKKGQISRPVKTQFG 268

Query: 267 VEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              I + D R+    E   +  +       K E   A+ +++L  +A +
Sbjct: 269 WHLIQLTDTRESGTPEERQRNAVRQYIMQQKAEAASAQLLQQLHESAYV 317


>gi|295675486|ref|YP_003604010.1| SurA domain protein [Burkholderia sp. CCGE1002]
 gi|295435329|gb|ADG14499.1| SurA domain protein [Burkholderia sp. CCGE1002]
          Length = 477

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/334 (11%), Positives = 101/334 (30%), Gaps = 34/334 (10%)

Query: 12  FIKLLTTYFVLIIFCIVPIV-----------SYKSWAMSSRIRTTINGEVITDGDISKRI 60
            +K L    +                        S      I   +N  VIT  ++ +R+
Sbjct: 26  IMKQLRLAILAAGLVAAASFVPVASVQAQALGGNSGQTVDTIAAVVNNGVITQRELDERV 85

Query: 61  ALLKLQKINGE--------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
            L+  +             L +  + ++++E ++ Q+ ++ GI  D   V     + A+ 
Sbjct: 86  GLIAHRLNQQNAPVPPTDQLRQQVLTQMVLERIQLQKAKEDGINIDDAAVQRTLERLAQA 145

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK- 171
             +    + + ++ QG+    F      +     + + +   K    + E+       + 
Sbjct: 146 NNMPLAMYRARIEAQGVPWATFSNDARTELTLSRLREKEVDSKITVTDAEVANYIASQRG 205

Query: 172 ---NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
                T   ++    + +  +    +    QK+ +                +  +     
Sbjct: 206 PGAGQTSDLHMQHIFVSAPLNAPETDIEAAQKKAQGLLAEAKGGADFGKLAKANSQAPDA 265

Query: 229 -VSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDKRDLGGE---- 281
             + G   +L  S L P+F +          +     T  G E + + ++R   G     
Sbjct: 266 SKNGGDLGFLAPSKLPPEFVKAASTLRPGEISPDLIRTNDGFEIVRLVERRAGQGTSADA 325

Query: 282 ----IALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
                    ++  +    + E    + +  +R+ 
Sbjct: 326 PKLVQTHVRHILLRVGDGQSEPQARQKLIDIRNQ 359



 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 48/145 (33%), Gaps = 2/145 (1%)

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
              +          +     Q++   ++++ D                 ++        G
Sbjct: 324 DAPKLVQTHVRHILLRVGDGQSEPQARQKLIDIRNQIAAGGDFAKFAHTYSQDGSSSQGG 383

Query: 233 KAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK-AYLSA 290
              ++   +  P+F+  +        + P  ++ G   I +  +RD  G IA +      
Sbjct: 384 DLGWISPGETVPEFERAMNALQDGQISEPVRSEYGYHLIQVLGRRDAEGSIAQQMDLARQ 443

Query: 291 QNTPTKIEKHEAEYVKKLRSNAIIH 315
                K E+  A+++++LR  A + 
Sbjct: 444 AIGQRKAEQAYADWLRELRDTAYVE 468


>gi|261209784|ref|ZP_05924089.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio sp. RC341]
 gi|260841174|gb|EEX67687.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio sp. RC341]
          Length = 431

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/313 (12%), Positives = 108/313 (34%), Gaps = 12/313 (3%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +KL  T  + +I  +    ++        +   +N  VI   D+   +  +K      + 
Sbjct: 1   MKLWKTTLISVISMLTLFNAHAEPQQLDGVAVIVNSGVILQSDVDGALKTVKANAKQNKQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L +  +++LI++TL++QE ++ G+  D N +N    + A+N   + E   + +
Sbjct: 61  PLPQESVLREQVLEKLIIDTLQQQEADRIGVKIDDNRLNEAIKEIAKNNQQTQEQLIASV 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            ++G+    F++ +  +    D        +   L  E+    + +   T      +   
Sbjct: 121 AQEGLTYPEFREQVRKEMAASDARNALVRRRINILPAEVDTLAELLAQETDATVQYKISH 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             +   + Q++   +                      ++     +  G   ++ + ++  
Sbjct: 181 IQLRVEEGQDKSEAESLANKLVGELKHGADFAQMAYTYSKGPKALQGGDWGWMRKEEMPT 240

Query: 245 QFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKH 300
            F +    +++ +   P+ +  G   + I D R    +        ++  + T    +  
Sbjct: 241 IFADQIKMQNKGSIIGPFRSGVGFHILKIDDVRGLETVAVTEVNARHILIKPTIILSDDG 300

Query: 301 EAEYVKKLRSNAI 313
             + + +      
Sbjct: 301 AQKQLSEFVQRIK 313



 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 81/270 (30%), Gaps = 4/270 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++     LL  +       KI+  +L VE  + +   +S        + +      
Sbjct: 154 ILPAEVDTLAELLAQETDATVQYKISHIQLRVEEGQDKSEAESLANKLVGELKHGADFAQ 213

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                S    +      G         +    I      +        +   I       
Sbjct: 214 MAYTYSKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIDDVR 273

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKI-HD 228
              TV    +      I    + +    QK++ +  +             ++++      
Sbjct: 274 GLETVAVTEVNARHILIKPTIILSDDGAQKQLSEFVQRIKNGEVSFGELAQQYSQDPGSA 333

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKA 286
              G+  Y       P+F++ ++       + P+ T  G   + + D+R +   + ALK 
Sbjct: 334 AQKGELGYQTPDLYVPEFKHQVETLPVGQISEPFKTVHGWHIVEVLDRRQVDRTDSALKN 393

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                    K  +  + ++++LR++A +  
Sbjct: 394 KAYRILFNRKFNEEASAWLQELRASAFVEI 423


>gi|258623407|ref|ZP_05718411.1| survival protein SurA [Vibrio mimicus VM573]
 gi|258584373|gb|EEW09118.1| survival protein SurA [Vibrio mimicus VM573]
          Length = 431

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/313 (12%), Positives = 107/313 (34%), Gaps = 12/313 (3%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +KL     + +I  +    ++        +   +N  VI   D+   +  +K        
Sbjct: 1   MKLWKPTLISVISALTLFNAHAEPEQLDGVAVIVNSGVILQSDVDGALKTVKANAKQNNQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L +  +++LI++TL++QE E+ G+  D N +N    + A+N   + E   S +
Sbjct: 61  PLPQETVLREQVLEKLIIDTLQQQEAERIGVKIDDNRLNDAIKEIAKNNQQTQEQLISSV 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            ++G+    F++ +  +    D        +   L  E+    + +   T      +   
Sbjct: 121 AQEGLTYPEFREQVRKEMAASDARNALVRRRINILPAEVDTLAELLAQETDATVQYKISH 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             +   + Q++   +                      ++     +  G   ++ + ++  
Sbjct: 181 IQLRVEEGQDKSKAESLANKLVGELKHGADFAQMAYTYSKGPKALQGGDWGWMRKEEMPT 240

Query: 245 QFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKH 300
            F +    +++ +   P+ +  G   + I D +    +        ++  + T    ++ 
Sbjct: 241 IFADQIKMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTIILSDEG 300

Query: 301 EAEYVKKLRSNAI 313
             + + +      
Sbjct: 301 AQKQLNEFVQRIK 313



 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 82/269 (30%), Gaps = 4/269 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++     LL  +       KI+  +L VE  + +   +S        + +      
Sbjct: 154 ILPAEVDTLAELLAQETDATVQYKISHIQLRVEEGQDKSKAESLANKLVGELKHGADFAQ 213

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                S    +      G         +    I      +        +   I       
Sbjct: 214 MAYTYSKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIDDVK 273

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC-NKLEKFASKI-HD 228
              TV    +      I    + +    QK++ +  +             ++++      
Sbjct: 274 GLETVAVTEVNARHILIKPTIILSDEGAQKQLNEFVQRIKNGEATFGELAQQYSQDPGSA 333

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKA 286
              G+  Y       P+F++ ++       + P+ T  G   + + D+R++   + ALK 
Sbjct: 334 AQKGELGYQTPDLYVPEFKHQIEILPVGQISEPFQTVHGWHIVEVLDRREVDRTDSALKN 393

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                    K  +  + ++++LR++A + 
Sbjct: 394 KAYRILFNRKFNEEASAWLQELRASAFVE 422


>gi|89898918|ref|YP_521389.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax
           ferrireducens T118]
 gi|121956453|sp|Q223E5|SURA_RHOFD RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|89343655|gb|ABD67858.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax
           ferrireducens T118]
          Length = 459

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 92/294 (31%), Gaps = 20/294 (6%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKING--------ELEKIAVQELIVETLKKQE 89
            +  I   +N E IT+ ++   +  +  Q             L +  ++ LI E  + Q 
Sbjct: 50  AADYIVAVVNSEPITNNEVRAALQRVLQQLAQQGNPQVDSKTLVRQVLERLINEKAQLQL 109

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
             +SGI  D   ++      AR   L+  +    L ++G     F+  L  Q +   + +
Sbjct: 110 ARESGIAADEAAIDQAEQNIARQNQLTVAELRRRLTQEGGVPGQFRNQLRDQILLTRLRE 169

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
            +   +    E+EI    ++ ++ T     I      +          V      A+ + 
Sbjct: 170 REVEPRARVSELEIDQFLREQQSSTPAVQQINLAQVLVSVPDTATPVQVTALQARAQRAL 229

Query: 210 LRLPKDCNK------LEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYV 262
            R     +           + K    + G+          P F +     +    +    
Sbjct: 230 ARARAGEDFVTLVREFSDASDKASLANGGELGLRTADRYPPLFLEATHNLAVGEISALVR 289

Query: 263 TQKGVEYIAICDKRDL-----GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           +  G   + + +K+           +   ++  + +P   E    + + + +  
Sbjct: 290 SGAGFHILKVLEKKSAALPAMTVTQSRARHILLRVSPQLTESAARDKLNEFKKR 343



 Score = 95.9 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 17/170 (10%), Positives = 47/170 (27%), Gaps = 2/170 (1%)

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           +        G   +++   K                +      +L       K  +  + 
Sbjct: 284 ISALVRSGAGFHILKVLEKKSAALPAMTVTQSRARHILLRVSPQLTESAARDKLNEFKKR 343

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKG 266
                          +        G   +       P+F+ ++   +    + P V++ G
Sbjct: 344 VAAGQADFAALARDHSQDGSAAQGGDLGWANPGMFVPEFEAVMNSLTPGQISEPLVSRFG 403

Query: 267 VEYIAICDKRDLG-GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           V  I + ++R         +  + A     K+++    + + +R  A + 
Sbjct: 404 VHLIQLMERRQATLSPQEQREAVRAMLHEKKLDEAYISWAQDVRGRAYVE 453


>gi|153007318|ref|YP_001381643.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030891|gb|ABS28659.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 323

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 95/293 (32%), Gaps = 17/293 (5%)

Query: 40  SRIRTTINGEVITDGDISKRI--ALLKLQKINGELE---------KIAVQELIVETLKKQ 88
            R+   +NGEV+T  ++++R   ALLK +++    E         K A  +++ E L + 
Sbjct: 23  DRVAALVNGEVVTLSELAERAGPALLKAEQLPAGAERESAQTAALKRAFDDVVAERLLQS 82

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
           +  +  +      V+       R  G         L +QGI    F+  +  +     V+
Sbjct: 83  KAAELQLEATEAQVDEAVEDIKRRNGFDDAALERALKEQGIDRATFRANVKREYDAFLVL 142

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
           +     K    + ++    Q        E  ++     +P  +   +    K        
Sbjct: 143 QYQVRSKVKVSDDDLRNYYQSHPQEFGGEDEVKVRHIFLPMPEGATKAQQAKVEDQMNRV 202

Query: 209 RLRLPKDCNKLE---KFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQ 264
             RL    +      + +        G   +L    +    ++          + P    
Sbjct: 203 LQRLKTGEDFAAVAREVSKGPSAAEGGDLGWLRRGTIDKALEDTAFALQAGQLSQPVRAG 262

Query: 265 KGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            G+    + ++R          K  + A     +   +  + + +LR +A+I 
Sbjct: 263 PGLHLFKVEERRVAGEKSFEDAKEEIRAHLVDQQAGTYRQQLIAELRRDALIE 315


>gi|297537786|ref|YP_003673555.1| SurA domain-containing protein [Methylotenera sp. 301]
 gi|297257133|gb|ADI28978.1| SurA domain protein [Methylotenera sp. 301]
          Length = 448

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/318 (16%), Positives = 106/318 (33%), Gaps = 19/318 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWA---MSSRIRTTINGEVITDGDISKRIALLKLQKIN 69
           IK    + +L     +        A      RI   ++  VIT+ ++  RIA +  Q   
Sbjct: 15  IKHAIQFILLASVLFIGNQFNAQAADIVKLDRIVAIVDQTVITEQELESRIATVTAQFKK 74

Query: 70  GE--------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
                     L K  ++ LI +TL+ Q   + G+  D N ++    + A    L+  +FS
Sbjct: 75  QGTELPEESVLRKQILERLITDTLQIQYAAQIGLKVDDNQLDKTVERIADQNNLTLTEFS 134

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
             L K GI    F+  +  +     + + +   +    E EI        ++        
Sbjct: 135 EALAKDGISMRKFRADIRNEITVARLREREVDGRVNVSESEIDNYLTSQASLNENTDEFE 194

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE---KFASKIHDVSIGKAQYLL 238
                I   +      +QK     +E+  +L    +  +    F+   + +  G   +  
Sbjct: 195 ISHILIRTPEEGATEDIQKAKAKVDEALSQLNSGVSFAKVSASFSDAPNALEGGSLGWKK 254

Query: 239 ESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNT 293
            S +   F   L        + P  +  G   + + +KR     L  +     ++  + T
Sbjct: 255 GSQMPALFLDALKNMQAGEVSAPLRSPNGFHLLKLTNKRGGNSPLVIQQTHARHILIKIT 314

Query: 294 PTKIEKHEAEYVKKLRSN 311
               +K     +  ++  
Sbjct: 315 EVMSDKEAETKIDAIKER 332



 Score = 96.3 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 49/139 (35%), Gaps = 2/139 (1%)

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
                   I   ++ +    + +I   +E      K      +F+      + G   ++ 
Sbjct: 303 QTHARHILIKITEVMSDKEAETKIDAIKERLDNGEKFEVLARQFSEDSTASNGGDLNWVN 362

Query: 239 ESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR-DLGGEIALKAYLSAQNTPTK 296
             D  P F+N +        + P  +Q G   I + ++R     + + +     +    K
Sbjct: 363 PGDTVPPFENAMNALKDGQISAPVRSQFGWHIIQVMERRSQDMSKESARLKARQEIRARK 422

Query: 297 IEKHEAEYVKKLRSNAIIH 315
            ++   +++++LR  A + 
Sbjct: 423 ADEAYQDWIRELRDRAYVE 441


>gi|262172454|ref|ZP_06040132.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio mimicus MB-451]
 gi|261893530|gb|EEY39516.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio mimicus MB-451]
          Length = 431

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/313 (12%), Positives = 107/313 (34%), Gaps = 12/313 (3%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +KL     + +I  +    ++        +   +N  VI   D+   +  +K        
Sbjct: 1   MKLWKPTLISVISALTLFNAHAEPQQLDSVAVIVNSGVILQSDVDGALKTVKANAKQNNQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L +  +++LI++TL++QE E+ G+  D N +N    + A+N   + E   S +
Sbjct: 61  PLPQETVLREQVLEKLIIDTLQQQEAERIGVKIDDNRLNDAIKEIAKNNQQTQEQLISSV 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            ++G+    F++ +  +    D        +   L  E+    + +   T      +   
Sbjct: 121 AQEGLTYPEFREQVRKEMAASDARNALVRRRINILPAEVDTLAELLAQETDATVQYKISH 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             +   + Q++   +                      ++     +  G   ++ + ++  
Sbjct: 181 IQLRVEEGQDKSEAESLANKLVGELKHGADFAQMAYTYSKGPKALQGGDWGWMRKEEMPT 240

Query: 245 QFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKH 300
            F +    +++ +   P+ +  G   + I D +    +        ++  + T    ++ 
Sbjct: 241 IFADQIKMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTIILSDEG 300

Query: 301 EAEYVKKLRSNAI 313
             + + +      
Sbjct: 301 AQKQLNEFIQRIK 313



 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 82/269 (30%), Gaps = 4/269 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++     LL  +       KI+  +L VE  + +   +S        + +      
Sbjct: 154 ILPAEVDTLAELLAQETDATVQYKISHIQLRVEEGQDKSEAESLANKLVGELKHGADFAQ 213

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                S    +      G         +    I      +        +   I       
Sbjct: 214 MAYTYSKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIDDVK 273

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC-NKLEKFASKI-HD 228
              TV    +      I    + +    QK++ +  +             ++++      
Sbjct: 274 GLETVAVTEVNARHILIKPTIILSDEGAQKQLNEFIQRIKNGEATFGELAQQYSQDPGSA 333

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKA 286
              G+  Y       P+F++ ++       + P+ T  G   + + D+R++   + ALK 
Sbjct: 334 AQKGELGYQTPDLYVPEFKHQIEILPVGQISEPFQTVHGWHIVEVLDRREVDRTDSALKN 393

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                    K  +  + ++++LR++A + 
Sbjct: 394 KAYRILFNRKFNEEASAWLQELRASAFVE 422


>gi|294634977|ref|ZP_06713494.1| peptidylprolyl cis-trans isomerase SurA [Edwardsiella tarda ATCC
           23685]
 gi|291091576|gb|EFE24137.1| peptidylprolyl cis-trans isomerase SurA [Edwardsiella tarda ATCC
           23685]
          Length = 434

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 111/311 (35%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI--------NGEL 72
           +++   +    ++ +  +  ++   ++  V+ + D+   +  +KL           N  L
Sbjct: 7   LILGVVLCANTAFAAPQVVDKVVAIVDNGVVLESDVDGMMKSVKLNAQQAGQQLPDNATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ ++ Q  ++ G+    + ++      A    L+ +   S L   G+   
Sbjct: 67  RHQILERLIMDNIQLQMAKRMGLEVSDSELDNAINGIAAQNHLTPQQLRSRLAADGLDYK 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + +  +V  N+   +   L  E+ A  +++ +    E  +      IP  + 
Sbjct: 127 AYRAQIRKEMLISEVRNNEVRRRVTILPQEVDALAKQISSQNSGETAVNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
             Q  V +  + AE    +             +++    +  G+  +    +L   F + 
Sbjct: 187 PTQQQVSEAQQQAESLVQQLRHGADFAKLAATYSADPQALKGGEMGWGRLQELPTLFAEA 246

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
           L    + +   P  +  G   + + D R    ++        ++  + +P   +      
Sbjct: 247 LQSAKKGDIVGPIRSGVGFHILRVNDLRGDQANVAVTEVHARHILLRTSPVMSDAQARAK 306

Query: 305 VKKLRSNAIIH 315
           ++ L   A I 
Sbjct: 307 LEAL--AAQIK 315



 Score = 87.8 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 80/285 (28%), Gaps = 17/285 (5%)

Query: 47  NGEV-----ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           N EV     I   ++      +  Q        ++   LI       + + S     + +
Sbjct: 143 NNEVRRRVTILPQEVDALAKQISSQNSGETAVNLS-HILIPLPENPTQQQVSEAQQQAES 201

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-------FML 154
           +       A    L+A   +     +G      +           +              
Sbjct: 202 LVQQLRHGADFAKLAATYSADPQALKGGEMGWGRLQELPTLFAEALQSAKKGDIVGPIRS 261

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
             G   + +   +    N+ V E   R +L          Q    K    A + +     
Sbjct: 262 GVGFHILRVNDLRGDQANVAVTEVHARHILLRTSPVMSDAQA-RAKLEALAAQIKSGQIT 320

Query: 215 DCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAI 272
                ++++         G   + + S   P F++  +K ++   + P  +  G   I +
Sbjct: 321 FEQAAKQYSDDPGSAQKGGDLGWAVPSMYDPAFRDALMKLNKGEISQPVHSNFGWHLIQL 380

Query: 273 CDKRDLG-GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
              R +   + A K          K  +    ++++ R+ A +  
Sbjct: 381 LGTRQVDRTDEAQKERAYRILFNRKFAEEAQTWLQEQRAAAYVKI 425


>gi|82701654|ref|YP_411220.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira
           multiformis ATCC 25196]
 gi|122070651|sp|Q2YBP3|SURA_NITMU RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|82409719|gb|ABB73828.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira
           multiformis ATCC 25196]
          Length = 440

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/308 (12%), Positives = 107/308 (34%), Gaps = 17/308 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--------EL 72
           +L    I    ++        I   +N  VIT  ++ + +  +  Q             L
Sbjct: 18  LLAGMAIAQQPAHSGVETIDHIVAVVNENVITRHELDEMLGAMLKQLQKQGVQPPPPAVL 77

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           EK  ++ +I+  ++ Q   ++G+T     ++    + A+   +S ++F   L + G+  +
Sbjct: 78  EKQLLERIILNRVQLQLANETGLTVSDAELDQTLRRIAQENKMSLQEFDRALAEDGVSFS 137

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            F+  +  + I   + + +   +    E E+    +  ++   +    R     I  ++ 
Sbjct: 138 KFRDEIRDEIILVRLKEREVSNRVSVTEGEVDHFLETQEDSPSQSDEYRIAHILIQVSEG 197

Query: 193 QNQGFVQKRIKDAEESRLRLP---KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            +        + AE +  +L    +      +F+     +  G   +   + L  +F + 
Sbjct: 198 ADPLKRDAARQRAESALAKLKAGTEFAQVAAEFSDAPDAMEGGLLNWRPAAQLTKKFAEI 257

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-----EIALKAYLSAQNTPTKIEKHEAE 303
           L        T    +  G   + + ++R+        +     ++  + +    E     
Sbjct: 258 LTPMKPGEITGIIPSPNGFHILKLVERRNQDTVTTMIDQTHARHILIKISELTSEADAHR 317

Query: 304 YVKKLRSN 311
            V +L+  
Sbjct: 318 RVTELKER 325



 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 54/167 (32%), Gaps = 2/167 (1%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
            +       +     ++    +T            I  ++L ++    +R+ + +E    
Sbjct: 269 IIPSPNGFHILKLVERRNQDTVTTMIDQTHARHILIKISELTSEADAHRRVTELKERLDN 328

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
             K     +  +      + G   ++   D  P+F+  +        ++P  +  G   I
Sbjct: 329 GSKFEELAKLHSEDASAPTGGDLGWISPGDTVPEFEQAMSALKPGEISSPVQSPFGWHLI 388

Query: 271 AICDKRDLGGEIALKAY-LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + ++R        K           K E    E++++LR  A + Y
Sbjct: 389 QVIERRTQDVSQERKRQSARQAIRARKAETAFQEWLQRLRDRAYVEY 435


>gi|85711793|ref|ZP_01042849.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina
           baltica OS145]
 gi|85694408|gb|EAQ32350.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina
           baltica OS145]
          Length = 432

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 112/318 (35%), Gaps = 16/318 (5%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +   +K  T+  + ++ CI   V++    +  R+   ++  VI +  I + I  +K  + 
Sbjct: 1   MKQLVKFSTSVSIALMMCITATVAHAQ-QVLDRVAVIVDDGVILESQIEQLIKQVKQSEN 59

Query: 69  --------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
                   +  L   A + LI + L+ Q  E+ GI      ++    + A++ G+S ++ 
Sbjct: 60  FSSANAPSDKVLRTQATERLIQQELQLQMAERMGIEVSEAQLDQAISRIAQDRGMSVDEL 119

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ---KMKNITVRE 177
                  G     F++ +  + I   V +     +      E+        +        
Sbjct: 120 RENTINSGQSWPAFREQIKTEIITSQVERAAVQRRVSVTPQEVENLVNLIEQNDASPTEY 179

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
            L + ++    D   + Q   ++R +   +             + +S  + +  G   ++
Sbjct: 180 RLRQILIGVDSDAPNEKQEAAKRRAQAVIDRLEEGEDFSQLAIRSSSGSNALDGGDLGWM 239

Query: 238 LESDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAICDKRD---LGGEIALKAYLSAQNT 293
            E+ +   F  ++K   +     P  +  G   + + DKR    +  +     ++  + +
Sbjct: 240 TENSMPTLFAEVVKGKSKGEIIGPIRSGVGFHILQVADKRGEQVVEVQEVKARHILIKPS 299

Query: 294 PTKIEKHEAEYVKKLRSN 311
               +    E + + R  
Sbjct: 300 VILSDNKAKEMLAQFREQ 317



 Score = 77.4 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 41/136 (30%), Gaps = 3/136 (2%)

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLES 240
             +   P   L +    +   +  E+            ++ ++        G   +    
Sbjct: 292 RHILIKPSVILSDNKAKEMLAQFREQILSGEKTFAELAKEHSADPGSASRGGDLGWSRPD 351

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK-AYLSAQNTPTKIE 298
               +F+  +    +   + P+ TQ G   + + D+R L      K           K  
Sbjct: 352 RYAEEFKQRVSTLEKGVISEPFRTQFGWHIVEVTDRRTLDATQESKRDKAYQMLFSRKYR 411

Query: 299 KHEAEYVKKLRSNAII 314
           +    + +++R  A +
Sbjct: 412 EEVDTWRQEMRDRAYV 427


>gi|37524613|ref|NP_927957.1| peptidyl-prolyl cis-trans isomerase SurA [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|81707805|sp|Q7N8V5|SURA_PHOLL RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|36784037|emb|CAE12906.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
           isomerase surA) (PPIase) (Rotamase C) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 433

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 37/304 (12%), Positives = 105/304 (34%), Gaps = 16/304 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI--------NGEL 72
           ++         ++ +     +I   +N  V+ + DI+ R+  +K               L
Sbjct: 7   LIFGLMFSVSTAFAAPQQMDKIAAVVNNGVVLESDINNRLQSVKRDAQHAGQQIPDEQTL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  ++ GIT     ++      A    ++ +     +   G+  +
Sbjct: 67  RHQILERLIIDNILLQMAKQMGITIPDQALDSTIANIAAQNHITVDQMKHRIAADGMNFD 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + +  +V  N+   +   L  EI A  +++ N    +  +      IP  + 
Sbjct: 127 TYRDQIRKEMLIAEVRNNEVRRRVTILPQEIDALVKQISNQNTNDTELNISHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLRLP---KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            +Q  ++K +   ++    L            +++    +  G   +    +L   F + 
Sbjct: 187 PDQAQMEKAMTVVQKIMSELKHGVDFGKLAIAYSADPQALKGGNMGWSRLQELPTLFAEQ 246

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
           L    +     P  +  G   + + D R     +        ++  + +P   +      
Sbjct: 247 LQLAQKGAVVGPIRSGVGFHILKVNDIRGGNPTIAVTEVHARHILLRTSPVMTDDQARTK 306

Query: 305 VKKL 308
           ++++
Sbjct: 307 LQQI 310



 Score = 85.9 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 87/294 (29%), Gaps = 26/294 (8%)

Query: 43  RTTI-NGEV-----ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGIT 96
              + N EV     I   +I   +  +  Q  N     I+        +   E       
Sbjct: 138 IAEVRNNEVRRRVTILPQEIDALVKQISNQNTNDTELNIS-----HILIPLPENPDQAQM 192

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND----- 151
             + TV    +   ++     +   ++             +  +Q +     +       
Sbjct: 193 EKAMTVVQKIMSELKHGVDFGKLAIAYSADPQALKGGNMGWSRLQELPTLFAEQLQLAQK 252

Query: 152 ------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
                      G   +++   +     I V E   R +L         +Q    K  + A
Sbjct: 253 GAVVGPIRSGVGFHILKVNDIRGGNPTIAVTEVHARHILLRTSPVMTDDQART-KLQQIA 311

Query: 206 EESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVT 263
            + R       +  ++F+      +  G   +       P F++  ++ ++   + P  +
Sbjct: 312 SDIRSGKTDFADAAKEFSDDPGSALRGGDLGWTAPDIYDPAFRDALMRLNKGEISQPVHS 371

Query: 264 QKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             G   I + D R +   ++A K          K  +    ++++ R++A +  
Sbjct: 372 SFGWHLIQLLDTRKVDKTDVAQKDRAYRMLFNRKFTEEAQSWMQEQRASAYVKI 425


>gi|118581988|ref|YP_903238.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter
           propionicus DSM 2379]
 gi|118504698|gb|ABL01181.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter
           propionicus DSM 2379]
          Length = 321

 Score =  130 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/297 (13%), Positives = 95/297 (31%), Gaps = 16/297 (5%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN---------GELEKIAVQELIVETL 85
              + + +   +N E+IT  +++     L  +              + + A+  L+ + L
Sbjct: 17  PGKLLNAVAAIVNDEIITLYEVNHEAQPLIREGEKKGSMNDEERKRIRRAALDGLVEKKL 76

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
            +Q+I++  I    + +N       R   L  E     L  QG+  + +K  L  Q    
Sbjct: 77  VEQKIKELNIKIGDDEINQAIDDVKRQNNLDQEGLVKALASQGLSYDQYKSQLREQLERL 136

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK-- 203
            +V  +   +    E E+ A   +       +   R        N+      +++ +   
Sbjct: 137 RLVSMEVRSRIQVGESEVRAYYNENLATYSEDETFRARHIFFKTNEKAPAEEIKRTMNTA 196

Query: 204 -DAEESRLRLPKDCNKLEKFASKIHDVS-IGKAQYLLESDLHPQFQNLL-KKSQNNTTNP 260
                              ++         G      + D+ P+ +  +    Q   +  
Sbjct: 197 LMVLAEAKSGKDFAELARTYSEDPAAKKDGGDLGSFKKGDMQPELEQAILGMKQGEVSEL 256

Query: 261 YVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             T  G   I +  +     +   ++K+ +       K E+   ++  ++R+ A I 
Sbjct: 257 VYTPLGFHLIKLEARTPGTPKPLESVKSEIEETIYRKKSEERFKKWATEMRAKASIE 313


>gi|78222035|ref|YP_383782.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           metallireducens GS-15]
 gi|78193290|gb|ABB31057.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           metallireducens GS-15]
          Length = 339

 Score =  130 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 111/337 (32%), Gaps = 30/337 (8%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRI-------------RTTINGEVITDGD 55
           ++ F         L    ++   +  + A +++                 +NG  IT  +
Sbjct: 1   MNVFKTARRQIIALSAIALLAGTAGANAAPTAKADAKAGEAPSATTAVARVNGVDITRAE 60

Query: 56  ISKRIALLKLQKI----------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           + +   ++  +            + ++E+ A+ +LI + L  Q  +K  I      +   
Sbjct: 61  LERAKKIILSRNQMASAAMNDEMSKKVEEAALNQLIAKELLFQAGKKQEIKDLDKKIQEK 120

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
             +H       A+ +   L +  + +   + +     +  ++++   +      + E   
Sbjct: 121 VAEHKARFKSQAD-YEKALKEMDMTEKEVETFTREDMVIGNLIETKIVANTKITDDEAKK 179

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR---LPKDCNKLEKF 222
                K+   RE  +R     +  ++  +    +K  + AE    +           +K 
Sbjct: 180 FYNDNKDKFRREEAVRASHILVSADQKASPEEKKKAKEKAEALLKQLKGGADFAELAKKE 239

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG-- 279
           +S       G   +  +  + P+F+           ++   TQ G   I + +K+D    
Sbjct: 240 SSCPSSAQGGDLGFFGKGQMVPEFEKTAFNLKPGEVSDVVETQFGYHIIKLAEKKDAETV 299

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                K  +    T  K++    EYV +LR    +  
Sbjct: 300 PFEEAKERIVQFLTQQKVQAGIGEYVDELRKKGKVEI 336


>gi|309750126|gb|ADO80110.1| Putative survival protein SurA-like protein [Haemophilus influenzae
           R2866]
          Length = 313

 Score =  130 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/318 (16%), Positives = 112/318 (35%), Gaps = 20/318 (6%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAM-SSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
           +K+        +   +  V++ S A    R+  T++G  + +  +       +       
Sbjct: 1   MKMKKFVLRSFLLAALGCVAFVSMAQAEERVVATVDGIPVLESQV-------RANMGKKG 53

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
             + A+ ++I + L ++ +++SG+  D   +++     A   GL+   F   LD QGI  
Sbjct: 54  DRQSAIDKIIDDILVQKAVQESGVKIDPREIDHVVEDTAARNGLTYGQFLDALDYQGISL 113

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI---------PANKQKMKNITVREYLIRT 182
           N F+Q +A Q +   V              E+          A ++        +     
Sbjct: 114 NAFRQQIANQMMMGAVRNKAIQESIDVTREEVVALGQKMLEEAKEKGTAQKVTGKEYEVR 173

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQY-LLES 240
            +    +  L +    ++  K   +         +   K++       + G   Y   E+
Sbjct: 174 HILLKLNPLLNDAQAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPET 233

Query: 241 DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEK 299
                 Q ++K  Q   + P+ T+ G   + +   RD              +   T+++ 
Sbjct: 234 YAPQFAQTVVKSKQGVISAPFKTEFGWHILEVTGTRDGDLTSEAYTQKAYERLVNTQLQD 293

Query: 300 HEAEYVKKLRSNAIIHYY 317
              ++VK LR  A I Y+
Sbjct: 294 ATNDWVKALRKRANIQYF 311


>gi|90580797|ref|ZP_01236600.1| putative survival protein SurA [Vibrio angustum S14]
 gi|90438065|gb|EAS63253.1| putative survival protein SurA [Vibrio angustum S14]
          Length = 433

 Score =  130 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 41/314 (13%), Positives = 119/314 (37%), Gaps = 15/314 (4%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK----- 67
           +K      + ++   +   S  +     ++  T+N  VI   D+S  +  ++L       
Sbjct: 1   MKTWKYSVLSLMMMGMSATSMAAPQELDQVVMTVNDGVILQSDVSAMLKTVRLNAAEEHQ 60

Query: 68  ---INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
               N  L +  + +LI+E L+ Q+ ++ GI  D + ++      A+   +S +     L
Sbjct: 61  QLPPNNILRQQVMDQLILENLQIQQAQQLGIRIDDSQLDQAIADVAKQRNMSVDQLRQSL 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            K G+  + F++ +    +  +        +   L  E+ +  ++M   T +        
Sbjct: 121 AKAGVSYSMFREQMRNDMLASEARTIIVRKRVNVLPQEVESLAKQMAEQTQQNVQYNISQ 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             I  ++  ++    K  ++AE+      +         +++     +  G+  ++ +++
Sbjct: 181 IQIRVDEDADKAERDKAKQEAEDIVAQLKKGANFSQLAYRYSKGPKALKGGEWGWMSKAE 240

Query: 242 LHPQFQNLLKKSQNN-TTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKI 297
           +   F + ++ +  +    P+ +  G   + I D +    +        ++  + +    
Sbjct: 241 MPTVFADQIQNNGKDAIIGPFRSGVGYHILKINDVKGMPSVSVVEVKARHILIKPSMILS 300

Query: 298 EKHEAEYVKKLRSN 311
           +      ++K+R +
Sbjct: 301 DAAAKAELEKIRQS 314



 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/264 (9%), Positives = 83/264 (31%), Gaps = 4/264 (1%)

Query: 56  ISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
           ++K++A    Q +   + +I ++        +++  K         +             
Sbjct: 162 LAKQMAEQTQQNVQYNISQIQIRVDEDADKAERDKAKQEAEDIVAQLKKGANFSQLAYRY 221

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
           S    +    + G         +    I  +            +   I          +V
Sbjct: 222 SKGPKALKGGEWGWMSKAEMPTVFADQIQNNGKDAIIGPFRSGVGYHILKINDVKGMPSV 281

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK-DCNKLEKFASKI-HDVSIGK 233
               ++     I  + + +    +  ++   +S +   +      + ++       + G+
Sbjct: 282 SVVEVKARHILIKPSMILSDAAAKAELEKIRQSIISGKQTFAAAAKAYSEDPGSAANGGQ 341

Query: 234 AQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKAYLSAQ 291
             + +     P F++ ++    +  + P+ +  G   + +  +R +   + A+K   +  
Sbjct: 342 LGWQVPDMYAPAFKDKVETLPVDKISEPFKSTFGWHIVEVEGRRKVDRTDAAMKNRAAQI 401

Query: 292 NTPTKIEKHEAEYVKKLRSNAIIH 315
               K  +    ++++LR+ A I 
Sbjct: 402 IFNRKFNEEAQTWLQELRAGAYIE 425


>gi|49474098|ref|YP_032140.1| hypothetical protein BQ04600 [Bartonella quintana str. Toulouse]
 gi|49239602|emb|CAF25959.1| hypothetical protein BQ04600 [Bartonella quintana str. Toulouse]
          Length = 324

 Score =  130 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 75/317 (23%), Positives = 125/317 (39%), Gaps = 9/317 (2%)

Query: 7   TSLSDFIKLLTTYFVLIIF----CIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIAL 62
           T ++ F K +   F +        +V           + I  T+NG  IT+ DI +R A 
Sbjct: 5   TYMNKFKKRILALFCIAPLSVSNLLVSGFLISPVFAQTVIVVTVNGNPITNYDIQRRTAF 64

Query: 63  LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
           LKLQ+  G L   A  ELI E +K  EI++  I    N V   F   A    ++ +  + 
Sbjct: 65  LKLQQKQGNLAAQAKNELINEIVKNTEIKRRNIEVSDNEVESAFENFAMQNNMTVDQLNQ 124

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
            L +  I   HFK Y+  Q  W  +V   +  + G +  +    +              T
Sbjct: 125 ILMQNDITVQHFKDYIRGQIGWGRLVNARYQAEIGMVSEQEAVRRILKNGGVKPSTNEYT 184

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
           +   I       +  + +R +   +S     + C   +K A  I DV+I      LE  L
Sbjct: 185 LQQIIFVIPEHRRSEILERRQREAKSFRAHFQGCANAQKQARGILDVTIRHLGKFLEPQL 244

Query: 243 HPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS----AQNTPTKI 297
             ++ Q +        T    T  G+E +A+C  + +  +   +   S     + +P K+
Sbjct: 245 PREWGQAVRATPVGKMTQLRETTDGIEALAVCKIKRVSDDYVARLIFSLQDNKEKSPQKL 304

Query: 298 EKHEAEYVKKLRSNAII 314
           E    +Y+K+LR  A I
Sbjct: 305 EILSEKYLKELRQAAHI 321


>gi|122070641|sp|Q145L3|SURA_BURXL RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
          Length = 450

 Score =  130 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 41/314 (13%), Positives = 99/314 (31%), Gaps = 22/314 (7%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE-------- 71
           F+ +       +S         I   +N  VIT  ++ +R+ L+  +             
Sbjct: 19  FLSVAPVQAQALSGSGGQTVDTIAAVVNNGVITRRELDERMGLITRRLNQQNAPVPPMDQ 78

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           L +  + ++++E ++ Q+ ++ GIT D  TV     + A    L+ + + S ++ QG+  
Sbjct: 79  LRQQVLNQMVLERIQLQKAKEDGITIDDATVQKTLERLAAANNLTLDVYRSRIEAQGVPW 138

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
             F      +     + + +   K    + E+       +           +        
Sbjct: 139 TTFTSDARTELTLSRLREKEVDSKVTVSDAEVANYIASQRGPNAGLTSDLHLQHIFLKAP 198

Query: 192 ----LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
                 +    Q++ +                +  +        G   ++  S L P+F 
Sbjct: 199 LNASETDIEAAQRKAQALLAEAKGGANFEKLAKSNSQAPDASKGGDTGFVSPSKLPPEFV 258

Query: 248 NLLKKSQNNTTNP--YVTQKGVEYIAICDKRDLGGE--------IALKAYLSAQNTPTKI 297
                 +    NP    T  G E + + D+R   G              ++  +      
Sbjct: 259 KAASALRPGEVNPDLIRTSDGFEIVRLVDRRAGQGTSSDAPKLVQTHVRHILLRVGDGMS 318

Query: 298 EKHEAEYVKKLRSN 311
           E    + + ++++ 
Sbjct: 319 EPQARQKLLEIKNE 332



 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 15/145 (10%), Positives = 49/145 (33%), Gaps = 2/145 (1%)

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
              +          +      ++   ++++ + +               ++        G
Sbjct: 297 DAPKLVQTHVRHILLRVGDGMSEPQARQKLLEIKNEIAAGGDFAKFAHTYSQDGSSSQGG 356

Query: 233 KAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK-AYLSA 290
              ++   +  P+F+  +        ++P  ++ G   I +  +R+  G +A +      
Sbjct: 357 DLGWISPGETVPEFERAMNSLQDGQISDPVRSEYGYHLIQVLGRRESEGSVAQQMDLARQ 416

Query: 291 QNTPTKIEKHEAEYVKKLRSNAIIH 315
                K E+  A+++++LR  A + 
Sbjct: 417 AIGQRKAEQAYADWLRELRDTAYVE 441


>gi|315635080|ref|ZP_07890360.1| peptidyl-prolyl cis-trans isomerase [Aggregatibacter segnis ATCC
           33393]
 gi|315476201|gb|EFU66953.1| peptidyl-prolyl cis-trans isomerase [Aggregatibacter segnis ATCC
           33393]
          Length = 307

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/310 (13%), Positives = 103/310 (33%), Gaps = 20/310 (6%)

Query: 20  FVLIIFCIVPIVSY-KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQ 78
              ++F  +  +++  +     ++  T+NG  + +  +   +             + A+ 
Sbjct: 3   LKSVLFVALGFLAFIANAQAEEKVVATVNGVPVLESQVKSAL-------TKKSNRQAALD 55

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
           ++I + L  Q +++SG++ ++  V+      A   GL+       LD QGI    ++Q +
Sbjct: 56  KVIDDILVAQAVKESGVSVNNAQVDQIIEGIAAQNGLTFGQLLDALDYQGISYAAYRQQI 115

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPA---------NKQKMKNITVREYLIRTVLFSIPD 189
           A Q +  +V              ++ A           +               +    +
Sbjct: 116 AQQLMMSEVRNRAISQSVDVSREQVEALAKKMLAEAKAKGNVAKLTDTQYEVRHILLKLN 175

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQY-LLESDLHPQFQ 247
             L +     +  +   +         +   K++       + G   Y   E  + P  +
Sbjct: 176 PLLNDAQAKAQLEQIRADILAGKTTFADAALKYSKDYLSGANGGSLGYAFPEMYVGPFNK 235

Query: 248 NLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKHEAEYVK 306
            +    Q   + P+ T+ G   + + + R               Q    +++    ++V+
Sbjct: 236 AVRTTKQGVISAPFKTEFGWHILEVTNTRQADRTEDAYRQKAYEQIVNQQLQDSARDWVQ 295

Query: 307 KLRSNAIIHY 316
            LR  A I Y
Sbjct: 296 ALRKRANIKY 305


>gi|107099580|ref|ZP_01363498.1| hypothetical protein PaerPA_01000593 [Pseudomonas aeruginosa PACS2]
 gi|313111760|ref|ZP_07797553.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
           39016]
 gi|310884055|gb|EFQ42649.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
           39016]
          Length = 404

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 98/289 (33%), Gaps = 15/289 (5%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKL--------QKINGELEKIAVQELIVETLKKQEIE 91
            R+   ++ +VI    + +R+  +                L +  ++ LI+E +++Q  +
Sbjct: 5   DRVVAIVDNDVIMQSQLDQRLREVHQTLLKRGAPLPPEHVLTQQVLERLIIENIQQQIGD 64

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
           +SGI      +N      A+  G+S E F + L + G+     ++ +  + +   V +  
Sbjct: 65  RSGIRISDEELNQAMGTIAQRNGMSLEQFQAALTRDGLSYADAREQVRREMVISRVRQRR 124

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIR---TVLFSIPDNKLQNQGFVQKRIKDAEES 208
              +    E E+                 R    ++               ++ ++  + 
Sbjct: 125 VAERIQVSEQEVKNFLASDMGKIQLSEEYRLANILIPVPEAASSDVIQAAARQAQELYQQ 184

Query: 209 RLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGV 267
             +           ++  + +  G+  +   + L   F +++   +  + T P  T  G 
Sbjct: 185 LKQGADFGQLAISRSAGDNALEGGEIGWRKAAQLPQPFDSMIGSLAVGDVTEPVRTPGGF 244

Query: 268 EYIAICDKRDLGG---EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             + + +KR       +     ++  + +  + E    +  +KL     
Sbjct: 245 IILKLEEKRGGSKMVRDEVHVRHILLKPSEIRSEAETEKLAQKLYERIQ 293



 Score = 90.9 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 15/139 (10%), Positives = 49/139 (35%), Gaps = 3/139 (2%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
                 +  ++++++   +K  +   E            + F+      ++ G   ++  
Sbjct: 264 HVRHILLKPSEIRSEAETEKLAQKLYERIQSGEDFGELAKSFSEDPGSALNGGDLNWIDP 323

Query: 240 SDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-YLSAQNTPTKI 297
             L P+F+  +    Q   + P+ +Q G   + +  +R        +     +     K 
Sbjct: 324 EALVPEFRQVMNDTPQGELSKPFRSQFGWHILQVLGRRATDSSEKFREQQAVSVLRNRKY 383

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           ++    +++++R  A +  
Sbjct: 384 DEELQAWLRQIRDEAYVEI 402


>gi|319775614|ref|YP_004138102.1| survival protein SurA [Haemophilus influenzae F3047]
 gi|317450205|emb|CBY86421.1| survival protein SurA homolog [Haemophilus influenzae F3047]
          Length = 311

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 56/316 (17%), Positives = 114/316 (36%), Gaps = 20/316 (6%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMS-SRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           +        +   +  V++ S A +  R+  T++G  I +  +       +         
Sbjct: 1   MKKFVLRSFLLAALGCVAFASMAQAGERVVATVDGIPILESQV-------RANMGKKGDR 53

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           + A+ ++I + L ++ +++SG+  D   +++     A   GL+   F   LD QGI  N 
Sbjct: 54  QSAIDKIIDDILVQKAVQESGVKIDPREIDHIVEDTAARNGLTYGQFLDALDYQGISLNT 113

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEI----------PANKQKMKNITVREYLIRTV 183
           F+Q +A Q +   V              E+             K   + +  +EY +R +
Sbjct: 114 FRQQIANQMVMGAVRNKAIQESIDVTREEVVALGQKMLEEAKEKGTAQKVMGKEYEVRHI 173

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY-LLESDL 242
           L  +       Q   Q     ++    +       L+     +   + G   Y   E+  
Sbjct: 174 LLKLNPLLNDAQAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPETYA 233

Query: 243 HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKHE 301
               Q ++K  Q   + P+ T+ G   + +   RD              +   T+++   
Sbjct: 234 PQFAQTVVKSKQGVISAPFKTEFGWHILEVTGVRDGDLTAEAYTQKAYERLVNTQLQDAT 293

Query: 302 AEYVKKLRSNAIIHYY 317
            ++VK LR  A I Y+
Sbjct: 294 NDWVKALRKRANIQYF 309


>gi|218665253|ref|YP_002427402.1| survival protein SurA [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218517466|gb|ACK78052.1| survival protein SurA [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 436

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 101/290 (34%), Gaps = 13/290 (4%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE---------LEKIAVQELIVET 84
           ++     ++   +N  +IT   + +R+  ++ +              L +  +Q++I++ 
Sbjct: 25  QNTQNLDKVVAVVNDNIITSMQLEQRVGAVRARLQTQNPNAMPPEDILRRQVLQQMILQD 84

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
           ++ Q   ++GI  D  T++      A+   L+ +     L  QG     F   L  + + 
Sbjct: 85  IELQIAHRAGIKVDKATLDQAISNLAQANHLTPDQLRQALANQGQSWERFTHDLEDRILV 144

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
             +++ +   +      E+    Q++K +    + ++ +   +PDN   +     +R  +
Sbjct: 145 DRLMQQEVENRVHIGPDEVKTFAQQLKEMGGVSFDLQQIFIPLPDNPTPDAVGAARRDAE 204

Query: 205 A-EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYV 262
              +  L   +      + +S    +  G+  ++   +L P      L+      +    
Sbjct: 205 QARDHVLAGERFGRVATQVSSGRDALQGGRLGWIKAGELPPAVAQTLLQLKVGEISPVIP 264

Query: 263 TQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
              G     + D +           A +  +   +   +      + ++ 
Sbjct: 265 GPTGFHIFKLLDVKHGQPTVTEVKTAMIVLRAGNSLQLQEAEARAQDIQQ 314



 Score = 68.9 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 13/123 (10%), Positives = 39/123 (31%), Gaps = 3/123 (2%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKS 253
              + R +D +++     +       ++       + G+  ++    L    +   L   
Sbjct: 303 QEAEARAQDIQQALQSGTRFSELARSYSQDPRTAANGGEMGWVAPGQLPDSLERTLLTLQ 362

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEI-ALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
               ++P      +  +    +R    E   + A    Q     + +   E+ +++R  A
Sbjct: 363 PGGVSSPIRVGNAIYILHSQAQRQQAVEEKQIMAAARMQLYNRIVHERMDEWQRRIRDGA 422

Query: 313 IIH 315
            + 
Sbjct: 423 YVE 425


>gi|85858737|ref|YP_460939.1| peptidyl-prolyl cis-trans isomerase [Syntrophus aciditrophicus SB]
 gi|85721828|gb|ABC76771.1| peptidyl-prolyl cis-trans isomerase [Syntrophus aciditrophicus SB]
          Length = 322

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 114/321 (35%), Gaps = 18/321 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-- 70
           +K L  +  L++  ++  +      +  RI   +N E+IT  +++      + +  +   
Sbjct: 1   MKKLQIFTFLLLSVLMATL-QARAEIVDRIVAFVNDEIITLHELNTAFEPYRKKIDDSYK 59

Query: 71  ---------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
                    E     +  +I   L +QE +KS I      V      +      + + F 
Sbjct: 60  GTDKDRIMSETRLTLLNRMIDNLLIEQEAKKSAIAVSDEEVMASIRDNLARRKTTMDAFQ 119

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK--QKMKNITVREYL 179
             L ++G     +K+ +    +   +++ +   K    + EI       + +        
Sbjct: 120 QSLAREGTNFEDYKKEMRDSMVRTRLLRREVRSKVTVNDEEIGEYYRLHREEYEGKDAVK 179

Query: 180 IRTVLFSIPDNKLQN-QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
           ++ +L   P N  +N +  +Q    +  +         +   +F+        G   ++ 
Sbjct: 180 LKHILLLFPGNMDENAKAKLQADAMEILKRLRMGESFDSLAARFSQGPAASDGGNVGFVE 239

Query: 239 ES-DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPT 295
           +   L    +      ++  ++   +  G   I + D+R         ++A + ++    
Sbjct: 240 KGAMLPEVEKAAFSLDRDKISDLIESPVGFHIIKVIDRRGPGLKPIEEVRAEIKSRLEDG 299

Query: 296 KIEKHEAEYVKKLRSNAIIHY 316
           KIEK    ++ +LR+ +++  
Sbjct: 300 KIEKKFDSWISELRAKSLVEI 320


>gi|296161011|ref|ZP_06843822.1| SurA domain protein [Burkholderia sp. Ch1-1]
 gi|295888710|gb|EFG68517.1| SurA domain protein [Burkholderia sp. Ch1-1]
          Length = 453

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 41/314 (13%), Positives = 100/314 (31%), Gaps = 22/314 (7%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE-------- 71
           F+ +       +S  S      I   +N  VIT  ++ +R+ L+  +             
Sbjct: 22  FLSVAPVQAQALSGSSGQTVDTIAAVVNNGVITRRELDERMGLITRRLNQQNAPVPPMDQ 81

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           L +  + ++++E ++ Q+ ++ GI  D  TV     + A    L+ + + S ++ QG+  
Sbjct: 82  LRQQVLNQMVLERIQLQKAKEDGINIDDATVQKTLERLAAANNLTLDVYRSRIEAQGVPW 141

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
           + F      +     + + +   K    + E+       +           +        
Sbjct: 142 STFTSDARTELTLSRLREKEVDSKVTVSDAEVANYIASQRGPNAGLTSDLHLQHIFLKAP 201

Query: 192 ----LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
                 +    Q++ +                +  +        G   ++  S L P+F 
Sbjct: 202 LNASETDIEAAQRKAQALLAEAKGGANFEKLAKSNSQAPDASKGGDTGFVSPSKLPPEFV 261

Query: 248 NLLKKSQNNTTNP--YVTQKGVEYIAICDKRDLGGE--------IALKAYLSAQNTPTKI 297
                 +    NP    T  G E + + D+R   G              ++  +      
Sbjct: 262 KAASTLRPGEINPDLIRTNDGFEIVRLVDRRTGQGTSSDAPKLVQTHVRHILLRVGDGMS 321

Query: 298 EKHEAEYVKKLRSN 311
           E    + + ++++ 
Sbjct: 322 EPQARQKLLEIKNE 335



 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 15/145 (10%), Positives = 49/145 (33%), Gaps = 2/145 (1%)

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
              +          +      ++   ++++ + +               ++        G
Sbjct: 300 DAPKLVQTHVRHILLRVGDGMSEPQARQKLLEIKNEIAAGGDFAKFAHTYSQDGSSSQGG 359

Query: 233 KAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK-AYLSA 290
              ++   +  P+F+  +        ++P  ++ G   I +  +R+  G +A +      
Sbjct: 360 DLGWISPGETVPEFERAMNSLQDGQISDPVRSEYGYHLIQVLGRRESEGSVAQQMDLARQ 419

Query: 291 QNTPTKIEKHEAEYVKKLRSNAIIH 315
                K E+  A+++++LR  A + 
Sbjct: 420 AIGQRKAEQAYADWLRELRDTAYVE 444


>gi|108760198|ref|YP_628739.1| putative foldase protein PrsA [Myxococcus xanthus DK 1622]
 gi|108464078|gb|ABF89263.1| putative foldase protein PrsA [Myxococcus xanthus DK 1622]
          Length = 349

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 33/314 (10%), Positives = 97/314 (30%), Gaps = 25/314 (7%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSR---IRTTINGEVITDGDISKRI--------ALLK 64
                 + +   V + +     M +    +  ++NGEV++  D  + +           +
Sbjct: 26  FLVPLAIALAAGVGMPACTKPVMETPEALVVASVNGEVLSRADFEQELWRELALTDVSQR 85

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
             +     ++  +   I   L  QE  K  +T     V+   ++   +    A +F+  L
Sbjct: 86  TLEDVEPFKRALLDTYIHRMLLLQEARKHNVTVTPEEVDRGVLRL--SGDYPAGNFNEVL 143

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            +  +     +   A +     +  +    +    E E+ A     +        +    
Sbjct: 144 AQGQLSMAELRSREASRLTIEKLFASHVYSRVAVTEEELRAWYGAHEKDFHEPEQVHAAQ 203

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             +       +   Q +            K  +   +++        G   +     + P
Sbjct: 204 IVVKGLDEARRLQTQLK---------SGKKFADLARRYSLSADAKVGGDLGFFPRGQMPP 254

Query: 245 QF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHE 301
            F + + K      ++   T+ G     + +++       + +++ +  +    K  + +
Sbjct: 255 AFDEVVFKLGVGQVSDVVSTEYGFHLFRVLERKPARKREFVEVRSLVEGKLLEQKRSQAQ 314

Query: 302 AEYVKKLRSNAIIH 315
             + ++LR  A + 
Sbjct: 315 ETFEQELRQKAQVQ 328


>gi|301169179|emb|CBW28776.1| survival protein SurA homolog [Haemophilus influenzae 10810]
          Length = 311

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 56/316 (17%), Positives = 114/316 (36%), Gaps = 20/316 (6%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMS-SRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           +        +   +  V++ S A +  R+  T++G  I +  +       +         
Sbjct: 1   MKKFVLRSFLLAALGCVAFASMAQAGERVVATVDGIPILESQV-------RANMGKKGDR 53

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           + A+ ++I + L ++ +++SG+  D   +++     A   GL+   F   LD QGI  N 
Sbjct: 54  QSAIDKIIDDILVQKAVQESGVKIDPREIDHIVEDTAARNGLTYGQFLDALDYQGISLNT 113

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEI----------PANKQKMKNITVREYLIRTV 183
           F+Q +A Q +   V              E+             K   + +  +EY +R +
Sbjct: 114 FRQQIANQMVMGAVRNKAIQESIDVTREEVVALGQKMLEEAKEKGTAQKVMGKEYEVRHI 173

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY-LLESDL 242
           L  +       Q   Q     ++    +       L+     +   + G   Y   E+  
Sbjct: 174 LLKLNPLLNDAQAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPETYA 233

Query: 243 HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKHE 301
               Q ++K  Q   + P+ T+ G   + +   RD              +   T+++   
Sbjct: 234 PQFAQTVMKSKQGVISAPFKTEFGWHILEVTGVRDGDLTAEAYTQKAYERLVNTQLQDAT 293

Query: 302 AEYVKKLRSNAIIHYY 317
            ++VK LR  A I Y+
Sbjct: 294 NDWVKALRKRANIQYF 309


>gi|91781822|ref|YP_557028.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           xenovorans LB400]
 gi|91685776|gb|ABE28976.1| Putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           xenovorans LB400]
          Length = 453

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 41/314 (13%), Positives = 99/314 (31%), Gaps = 22/314 (7%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE-------- 71
           F+ +       +S         I   +N  VIT  ++ +R+ L+  +             
Sbjct: 22  FLSVAPVQAQALSGSGGQTVDTIAAVVNNGVITRRELDERMGLITRRLNQQNAPVPPMDQ 81

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           L +  + ++++E ++ Q+ ++ GIT D  TV     + A    L+ + + S ++ QG+  
Sbjct: 82  LRQQVLNQMVLERIQLQKAKEDGITIDDATVQKTLERLAAANNLTLDVYRSRIEAQGVPW 141

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
             F      +     + + +   K    + E+       +           +        
Sbjct: 142 TTFTSDARTELTLSRLREKEVDSKVTVSDAEVANYIASQRGPNAGLTSDLHLQHIFLKAP 201

Query: 192 ----LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
                 +    Q++ +                +  +        G   ++  S L P+F 
Sbjct: 202 LNASETDIEAAQRKAQALLAEAKGGANFEKLAKSNSQAPDASKGGDTGFVSPSKLPPEFV 261

Query: 248 NLLKKSQNNTTNP--YVTQKGVEYIAICDKRDLGGE--------IALKAYLSAQNTPTKI 297
                 +    NP    T  G E + + D+R   G              ++  +      
Sbjct: 262 KAASALRPGEVNPDLIRTSDGFEIVRLVDRRAGQGTSSDAPKLVQTHVRHILLRVGDGMS 321

Query: 298 EKHEAEYVKKLRSN 311
           E    + + ++++ 
Sbjct: 322 EPQARQKLLEIKNE 335



 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 15/145 (10%), Positives = 49/145 (33%), Gaps = 2/145 (1%)

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
              +          +      ++   ++++ + +               ++        G
Sbjct: 300 DAPKLVQTHVRHILLRVGDGMSEPQARQKLLEIKNEIAAGGDFAKFAHTYSQDGSSSQGG 359

Query: 233 KAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK-AYLSA 290
              ++   +  P+F+  +        ++P  ++ G   I +  +R+  G +A +      
Sbjct: 360 DLGWISPGETVPEFERAMNSLQDGQISDPVRSEYGYHLIQVLGRRESEGSVAQQMDLARQ 419

Query: 291 QNTPTKIEKHEAEYVKKLRSNAIIH 315
                K E+  A+++++LR  A + 
Sbjct: 420 AIGQRKAEQAYADWLRELRDTAYVE 444


>gi|260912727|ref|ZP_05919213.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Pasteurella
           dagmatis ATCC 43325]
 gi|260633105|gb|EEX51270.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Pasteurella
           dagmatis ATCC 43325]
          Length = 311

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 59/318 (18%), Positives = 121/318 (38%), Gaps = 20/318 (6%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
            +K L    +      +  +S  + A + R+  T+NG  + +  +       K       
Sbjct: 1   MMKTLNIKSIFFALVGLFAISTTTQA-AERVVATVNGIPVLESQV-------KANSGKKG 52

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
             + A+ + I + L +Q I+ SG+  +   V+      A   GL+   F   LD QGI  
Sbjct: 53  NRQAALDKAIDDILVQQAIQNSGVKVNYAQVDQIIEGIAAQNGLTYGQFLDALDYQGISY 112

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP----------ANKQKMKNITVREYLIR 181
           N ++Q +A Q +  +V              ++             K   K ++ ++Y +R
Sbjct: 113 NTYRQQIANQLLMTEVRNQAIGQSIDVTREQVEALGKQLLQEAKEKGTEKKVSGKQYEVR 172

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY-LLES 240
            +L  +       Q   Q     A+    ++      L+     +   + G   +   E+
Sbjct: 173 HILLKLNPLLNDTQAKAQLSQIRADIMAGKMTFADAALKYSKDYLSGANGGSLGFAFPET 232

Query: 241 DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEK 299
            + P  + ++   Q   + P+ T+ G   + + + RD    +   +     Q   ++++ 
Sbjct: 233 YVGPFQKTVITSKQGVISAPFKTEFGWHILEVTNTRDGDRTLDAYRQQAYEQLINSQVKD 292

Query: 300 HEAEYVKKLRSNAIIHYY 317
            E ++VK LR NA I Y+
Sbjct: 293 AEKDWVKALRKNADIQYF 310


>gi|319408317|emb|CBI81970.1| conserved exported hypothetical protein [Bartonella schoenbuchensis
           R1]
          Length = 308

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 127/301 (42%), Gaps = 5/301 (1%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           +L +          S    + +  T+NG  IT+ DI +RIA LKLQ+  G+L   A  EL
Sbjct: 1   MLGVSSFTGAFFISSVFAQTTVAITVNGNPITNYDIQRRIAFLKLQQKQGDLSAQARNEL 60

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I E LK  EI++  I    N +N  F   A    ++ +  S  L++  + + HFK Y++ 
Sbjct: 61  IDEMLKNIEIQRLNIDVSDNEINSAFANFAEQNNMTVDQLSEMLNQTEVTEEHFKAYISG 120

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           Q  W  +V   +  + G L  +  A++              T+   I       +  +  
Sbjct: 121 QMGWGRLVNARYQSEDGYLSEQEAAHRILKNGGIKPSTNEYTLQQIIFVIPAHRRAELLT 180

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTN 259
           +      +     + C+  +K    I DV++      LE  L   ++  ++ +     T 
Sbjct: 181 KRTQEINNFRAHFRGCDNTKKQTRGILDVTVRNLGKFLEPQLPTDWEQAIRATPAGKMTQ 240

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP----TKIEKHEAEYVKKLRSNAIIH 315
           P+ T  G+E +A+C  + +  +   +   S Q++      K+E    +Y+K+LR  A I 
Sbjct: 241 PHETPYGIEALAVCQIKKVSDDRVAQLMFSIQDSQKRTPQKLEALSEKYLKELRQRAHIQ 300

Query: 316 Y 316
            
Sbjct: 301 N 301


>gi|239906716|ref|YP_002953457.1| putative peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           magneticus RS-1]
 gi|239796582|dbj|BAH75571.1| putative peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           magneticus RS-1]
          Length = 371

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 53/335 (15%), Positives = 112/335 (33%), Gaps = 32/335 (9%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           + D +  +  +F ++           +  +  R+   +NG++IT  D++ R+A +  Q  
Sbjct: 38  MEDTLPQIAKFFGVLALLASLATPAGAAELVDRVVAVVNGKLITLFDVNTRVADMVKQTQ 97

Query: 69  N----------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
                       +L +  ++ +I + L + E  K  +T     ++    +  +   LS +
Sbjct: 98  GVALKPDDPRLDDLRRQVLESMITDMLIESEANKLKVTVSDTEIDSQIEEIKKKNNLSQQ 157

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV--R 176
            F + L K+G+    F+  + + SI   ++      K    + EI    +K K      +
Sbjct: 158 QFVTELAKEGLTLKQFRDKMRLDSIKKRLLGFMVHRKVLVTDDEIRDYYEKNKGSLSAAK 217

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
             L   V   +    + N+   ++         +      +  +KF+        G    
Sbjct: 218 SVLGPKVSGGLGFIMVPNKKQAEELRDRINSGSMSF---ADAAKKFSIGPGRDQGGDLGD 274

Query: 237 LLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL---------------GG 280
           +   DL  P    L        + P +   G   + +                       
Sbjct: 275 VQIKDLAPPLRSALTAVPPGQVSEPVLLD-GKAVLLVQRTASAPAEKPAAPAAAAGSNPS 333

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             A K  +       K +K   EY+  LRS A++ 
Sbjct: 334 YEAAKEQIQELLYKQKFDKLFQEYIDNLRSKAVVE 368


>gi|322434749|ref|YP_004216961.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp.
           MP5ACTX9]
 gi|321162476|gb|ADW68181.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp.
           MP5ACTX9]
          Length = 672

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 99/284 (34%), Gaps = 14/284 (4%)

Query: 47  NGEVITDGDISKRIALLKLQKINGEL--------EKIAVQELIVETLKKQEIEKSGITFD 98
           N ++I+  D+ +    L+ +     L        +K  ++++I + L   + ++ G+  D
Sbjct: 79  NDQIISRSDVDRSEEQLEQESAQQNLSPADLASRQKDMLRDMIDQQLLLSKAKELGLNAD 138

Query: 99  SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGN 158
           +  +        +N   S +D      +QG+    FK  +  Q +   VV+++   +   
Sbjct: 139 AEVIRRLDDIRKQNKLDSMDDLEKAARQQGVSFEDFKAQIRNQILTQQVVRDEVGRRLQT 198

Query: 159 LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE---ESRLRLPKD 215
            + E     +  K    +   +R     +P     +   +++    A       ++    
Sbjct: 199 TQAEQAKYYEAHKKDFEQPEQVRLSEILVPLPDTASPAEIEQAETKANGLKSELMKGGDF 258

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICD 274
               +K +        G+        L    ++     +   +T P  T++G   + + +
Sbjct: 259 AEVAKKNSGGPTAAQGGELGLFKRGALAKVIEDQTFALAPGESTQPIRTRQGFVILKVNE 318

Query: 275 KRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            ++        ++  +        ++     Y+ KLR NA +  
Sbjct: 319 HQEPGAAPMKDVEPQIQEALYMNAMQPALRAYLTKLRENAYVDI 362


>gi|90419499|ref|ZP_01227409.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336436|gb|EAS50177.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 346

 Score =  129 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 77/305 (25%), Positives = 130/305 (42%), Gaps = 5/305 (1%)

Query: 14  KLLTTYFVLIIFCIVPIVSYK-SWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +     FVL       + +   S   +S I+  +NG  IT   I +R A L+L+++ G  
Sbjct: 40  RRAALAFVLAGSAAATLPATTVSVQAASEIKAVVNGMPITSYQIRQRAAFLQLRRVGGNA 99

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            + A  ELI E LKKQEI + GI      V+  F + A    L+ E     L + G   +
Sbjct: 100 TQKATDELIDEALKKQEIGRRGIAIPDEAVDEAFGRFAAENKLTREQLGQVLSRAGFSSD 159

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            FK Y+ +Q  W   V+ +        E ++                             
Sbjct: 160 GFKDYIRVQMGWGQAVQANMRSTERLSEQDVVQRMLAQGGEKPSTTEYTLQQVIFVIPDA 219

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
           Q    + +R ++AE  R R     +   +FA  + DV++     + + +L P+++  ++ 
Sbjct: 220 QRSALMAQRKREAESMRSRFQSCESTY-EFAKGLRDVTVRDLGRVAQPELPPRWKKDIQA 278

Query: 253 SQNNTTNPYV-TQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE--AEYVKKLR 309
           +    T P   T++GVE+IA+C+ R++  + A      A+      E+ E  A Y+KKLR
Sbjct: 279 TSVGRTTPAQATERGVEFIAVCNTRNISDDKAAALVFQAREMEKLGEQAEPDAAYLKKLR 338

Query: 310 SNAII 314
             A I
Sbjct: 339 DRAQI 343


>gi|94264357|ref|ZP_01288149.1| PpiC-type peptidyl-prolyl cis-trans isomerase [delta
           proteobacterium MLMS-1]
 gi|93455251|gb|EAT05464.1| PpiC-type peptidyl-prolyl cis-trans isomerase [delta
           proteobacterium MLMS-1]
          Length = 335

 Score =  129 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 109/294 (37%), Gaps = 19/294 (6%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKING-----------ELEKIAVQELIVETLKKQ 88
            R+   +NGE+IT  ++ + +A ++ Q +             E  +  +  +I   L +Q
Sbjct: 38  DRVVAEVNGEIITMSELEREMAGVEQQVLQQAPAADREQVLAEARQQVLSGMIDRLLARQ 97

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
           + ++ GI      V+    Q   +  ++ E+  + + +      ++++ L  Q +   ++
Sbjct: 98  QADRLGIRVGEREVDEAIAQILADNRITMEELEAEIARHHGSMENYRRDLQTQILQSRLL 157

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
             +   +    E  I    Q+             +L    +    +    ++  + AEE 
Sbjct: 158 SLEVRERVVIPERRIKEYYQQHHQEQTSPEEAYHILQIGFNWPPGDDEAREQARRQAEEI 217

Query: 209 RLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQ 264
             +  +  +      +++      + G      + +L     +++ +      +    T 
Sbjct: 218 HRQARQGADFRELARRYSDLPSARNDGDLGVFQKDELAGIMLEHIPELEPGEISTILETA 277

Query: 265 KGVEYIAIC----DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            G ++  +     + R  G    LK  +  +     +E+  +++VK+LR NA I
Sbjct: 278 AGYQFFKLLSNQGELRATGSYEELKGKIREKLYQQALEEQFSKWVKELRENAYI 331


>gi|323700040|ref|ZP_08111952.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio sp.
           ND132]
 gi|323459972|gb|EGB15837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           desulfuricans ND132]
          Length = 633

 Score =  129 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 49/402 (12%), Positives = 102/402 (25%), Gaps = 96/402 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + S +I  +    ++I+F     +S  + +       T+NG+ IT  +     
Sbjct: 1   MLEVMRENASGWIVKILFAIIIIVFVFAFGMSGLN-SSGDPTVATVNGQAITRAEYEAMY 59

Query: 61  ALL------------KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF-- 106
                            Q  + E +++ + ELI + L   E  K GI      V      
Sbjct: 60  QRAAENLRRTNPDLPPAQTRSPEFKQMVLGELISQKLLLGEAAKLGIRASDKEVAAGIGA 119

Query: 107 --VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN-------------- 150
                  N     + + + L    +    F++          V                 
Sbjct: 120 VDAFKDANGNFDQQRYQTALRDIRMTPGDFEENYRRDLTMEKVKDAVGVPADLSESQARQ 179

Query: 151 -------------------DFMLKYGNLEMEIPANKQKMKNITV---------------- 175
                              DF  +    E EI A  Q  ++                   
Sbjct: 180 IFDWLGETAAIDYIEVLPTDFRNEIKIGETEIEAYYQANQDRFQIPAQVTLRTLAFTPAS 239

Query: 176 ------------------------REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                                       +      +   +  +Q   +K     ++    
Sbjct: 240 LAKFQTVTDDEIKAYYAANKDSLEEPAQVHARHILVAVKESDSQADQEKAKARIDKLYQE 299

Query: 212 ---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGV 267
                      +K +      + G   +  +  + P F+      ++   + P  TQ G 
Sbjct: 300 AKAGADFAELAKKNSDGPSAPNGGDLGWFGKGAMIPDFEKAAFALNKGGVSEPVRTQFGW 359

Query: 268 EYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
             I + DK++         K  + A+    K      + + +
Sbjct: 360 HIIMVEDKKEGTTKTFDEAKDEIKARLAEEKASDQANDLLDQ 401


>gi|253998290|ref|YP_003050353.1| SurA domain-containing protein [Methylovorus sp. SIP3-4]
 gi|253984969|gb|ACT49826.1| SurA domain protein [Methylovorus sp. SIP3-4]
          Length = 438

 Score =  129 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 39/321 (12%), Positives = 111/321 (34%), Gaps = 16/321 (4%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
            T  +  +  +  +   +I  +       S     RI   ++  V+T+ +++ RI ++  
Sbjct: 1   MTIKNCLMAGVFLWLGALIPHVASAAQDGSVNKIDRIVAVVDQGVVTEKELNDRIEIVSA 60

Query: 66  QKINGE--------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
           Q             LEK  ++ LI + L+ Q   ++G+  D + ++   ++ A    +  
Sbjct: 61  QLEKQGNQLPPRNVLEKQILERLINDRLQLQYAAQTGLRVDDDQLDKTIMRIAEQNKMGV 120

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
            +F   L  +GI    F++ +  + +   + + +   +    E E+        +     
Sbjct: 121 PEFKEALAAEGIVYKKFREDIRNEILLARLREREVDNRVNVTESEVDNFLTTQSSRQDSS 180

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL---EKFASKIHDVSIGKA 234
                    I   +  +   +++  + AE++  +L    +      + +   + +  GK 
Sbjct: 181 DEYEISHILIRAPEDGSPEDLKRLREKAEDALKKLQAGEDFGQVSARVSDAPNALEGGKL 240

Query: 235 QYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLS 289
            +   + +   F + L        +    +  G   + + D+R        +     ++ 
Sbjct: 241 GWKTAAQVPALFLEALKPMQVGQLSGILRSPNGFHILKLTDRRGGNTSTMVQQTHTRHIL 300

Query: 290 AQNTPTKIEKHEAEYVKKLRS 310
            + +    E      +  ++ 
Sbjct: 301 IKTSEVLSETEAKRKIDGIKQ 321



 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 53/144 (36%), Gaps = 2/144 (1%)

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGK 233
           +       T    I  +++ ++   +++I   ++            +++++     + G 
Sbjct: 288 STMVQQTHTRHILIKTSEVLSETEAKRKIDGIKQLIDNGEDFGEAAKRYSNDGSAANGGD 347

Query: 234 AQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-YLSAQ 291
             ++   D  PQF+  +        ++   +  G   I + ++R+       +      +
Sbjct: 348 LGWVNPGDTVPQFEKAMNALQPGQISDAVRSPFGWHLIQVLERRNQDMTREAERMKARQE 407

Query: 292 NTPTKIEKHEAEYVKKLRSNAIIH 315
               K ++   ++V++LR  A + 
Sbjct: 408 IRQRKADEAYQDWVRELRDRAYVE 431


>gi|258593267|emb|CBE69606.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [NC10
           bacterium 'Dutch sediment']
          Length = 351

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 53/317 (16%), Positives = 113/317 (35%), Gaps = 18/317 (5%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL---- 72
            +   +I+   V   S     +  RI   +N +VIT  D+ +       + +   L    
Sbjct: 32  ASLMTVILLLSVFAASGADAVILDRIVAVVNDDVITLTDVQEEGIQAIRRIVRETLGAER 91

Query: 73  -------EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG-LSAEDFSSFL 124
                  E+  + ELI+  L+ QE  K  I      +     +  +  G  S E+  + L
Sbjct: 92  ERLLRSTERQILDELILRRLQLQEATKEKIETAPAEIQSAIEELKKRNGLASDEELRAAL 151

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            ++ + +  F++ +A Q +   +V      K   L+ E+    ++ ++        +   
Sbjct: 152 SREQLSEEQFRKGIADQVMLTKLVARRVRAKVVVLDEEVQQYYEQRQDQFREIPQFKIRH 211

Query: 185 FSIPDNKLQNQGF---VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             +        G     +KRI++A+    +  +     +++A      S G+   +   +
Sbjct: 212 LLVATPPQATPGELSRAKKRIEEAQTLLKKGTQFATVAKQYAEGPLASSSGEVWTMKHGE 271

Query: 242 LHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIE 298
           L P+ +           +    T  G   I + ++          +K  L A     K E
Sbjct: 272 LAPELEQAALALPIGQPSGIITTPAGFHLIVVEERVPGQTLSFDQVKERLRALLFEQKTE 331

Query: 299 KHEAEYVKKLRSNAIIH 315
               E+++ LR+ A + 
Sbjct: 332 TKFKEWIESLRTKANVE 348


>gi|256823427|ref|YP_003147390.1| SurA domain-containing protein [Kangiella koreensis DSM 16069]
 gi|256796966|gb|ACV27622.1| SurA domain protein [Kangiella koreensis DSM 16069]
          Length = 427

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/310 (14%), Positives = 115/310 (37%), Gaps = 15/310 (4%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK------- 67
           +L    +    C+          +  ++   ++ +VI   ++ +++   K Q        
Sbjct: 2   ILKKALIGFTLCLAAFS--LQAEVIDKVIAHVDEDVILQSELDRKVIQAKQQIRSRGGQL 59

Query: 68  -INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
                L+K  +++LI+++L+ Q   +SG+      +  +  Q A+++G++ ++F   L +
Sbjct: 60  PPEDVLKKELLEQLIIQSLQYQMAVRSGMQLQPAELQQYAAQVAQSSGMTLDEFRLSLAQ 119

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
           QGI    F   L  + +   +       +    + EI +  Q M      EY +  +L +
Sbjct: 120 QGIAYELFLDDLRKEILTGQLRDAFVSRRIKVSDKEIESLIQSMNAQNQVEYHLGHILIA 179

Query: 187 IPDNKLQNQGFVQKRIK-DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ 245
           + ++  +      K+      +            +  +S       G   +  ES++   
Sbjct: 180 VQEDADEETQKQAKQNALKVMKELKAGADFAETAKVVSSSPDAAEGGDFGWRTESNMPTL 239

Query: 246 FQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG---GEIALKAYLSAQNTPTKIEKHE 301
           F N++      + + P  +  G   + I DKR       +     ++  +      E + 
Sbjct: 240 FANVVNFLDTGDISQPIRSPSGFHILKIKDKRGEQQHLVQQTNARHILIRPDAITTESNA 299

Query: 302 AEYVKKLRSN 311
            + ++ +R  
Sbjct: 300 KQQLQNIRQR 309



 Score = 78.9 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 22/271 (8%), Positives = 65/271 (23%), Gaps = 5/271 (1%)

Query: 50  VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
            ++D +I   I  +  Q          +  +  +  ++ + +                  
Sbjct: 150 KVSDKEIESLIQSMNAQNQVEYHLGHILIAVQEDADEETQKQAKQNALKVMKELKAGADF 209

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
           A    + +    +                   ++   +   D      +         + 
Sbjct: 210 AETAKVVSSSPDAAEGGDFGWRTESNMPTLFANVVNFLDTGDISQPIRSPSGFHILKIKD 269

Query: 170 MKNITVREYLI--RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI- 226
            +              +   PD         Q+     +          ++ +K +    
Sbjct: 270 KRGEQQHLVQQTNARHILIRPDAITTESNAKQQLQNIRQRVLAGEADFGDEAKKHSDDPG 329

Query: 227 HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR-DLGGEIAL 284
                G   +       P F+        N  + P+ +  G   + +  +R D   +   
Sbjct: 330 SAKLGGNLGWNNLGVYDPVFEQTLTDLDVNEISEPFQSNFGWHIVQLLGRRTDDQTDAMK 389

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +          K  +    ++++LR  A + 
Sbjct: 390 RQQAMRILQQRKFGEEVENWIRELRDEAYVK 420


>gi|62178657|ref|YP_215074.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|75505914|sp|Q57TG8|SURA_SALCH RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|62126290|gb|AAX63993.1| peptidyl-prolyl cis-trans isomerase, survival protein [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
          Length = 428

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 113/311 (36%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAIVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  +
Sbjct: 67  RHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANIAKQNNMTMDQMRSRLAYDGLNYS 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP--ANKQKMKNITVREYLIRTVLFSIPDN 190
            ++  +  + I  +V  N+   +   L  E+   A +   +N    E  +R +L ++P+N
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDASTELNLRHILIALPEN 186

Query: 191 KLQNQGFVQKRIKDAE-ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
               Q    +R  ++  E              +++    +  G+  +    +L   F   
Sbjct: 187 PTSEQVNDAQRQAESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R     +        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMNDQQARLK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEEI--AADIK 315



 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 89/287 (31%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q          +  L    +   E   S    D+    
Sbjct: 143 NNEVRRRITV--LPQEVDALAKQIGTQNDASTELN-LRHILIALPENPTSEQVNDAQRQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V+ ARN     +   ++   Q         +  IQ +     +              
Sbjct: 200 ESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   + + ++I+V E   R +L         +Q    K  + A + +   
Sbjct: 260 RSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMN-DQQARLKLEEIAADIKSGK 318

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYI 270
                  ++++         G   +       P F++ L K      + P  +  G   I
Sbjct: 319 TTFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKLHKGQISAPVHSSFGWHLI 378

Query: 271 AICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R +   + A K          K  +  A ++++ R++A +  
Sbjct: 379 ELLDTRKVDKTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKI 425


>gi|257465500|ref|ZP_05629871.1| peptidyl-prolyl cis-trans isomerase SurA [Actinobacillus minor 202]
 gi|257451160|gb|EEV25203.1| peptidyl-prolyl cis-trans isomerase SurA [Actinobacillus minor 202]
          Length = 317

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 57/316 (18%), Positives = 105/316 (33%), Gaps = 15/316 (4%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K  +   +L+ F     +S    A   R+  T++G +I +  +++    L  +      
Sbjct: 1   MKFTSAKSLLVAFVATLGLSQSLLAAEERVIATVDGNMIMESQVTRA---LGKKANTEAN 57

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            K A++ +I E L ++ I++SG+  D   V+    + A   GL+       LD QGI  N
Sbjct: 58  RKAALENIIDEMLVQKAIQQSGVKVDYRRVDQAIEEIAVRNGLTYGQLLDALDYQGITLN 117

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV---------REYLIRTV 183
            ++Q +A Q +   V              ++ A  Q +                    + 
Sbjct: 118 QYRQQIAQQMMMEAVRHQSIGKSIQVNPEDVRAQAQALMAKDKAAGKLKSVSGTEPRISH 177

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQY-LLESD 241
           +       L +     K      + +          +  +         G   +  L+  
Sbjct: 178 ILIKTTPVLNDAQAKAKLNSIIADIKAGKTTFEEAAKANSVDYVSAADGGDLGFNFLDIY 237

Query: 242 LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKH 300
                    K  Q   T P+ +Q G   + + D R         A     Q    + E  
Sbjct: 238 DPAFANAAAKAKQGQITAPFKSQFGWHILKVTDYRQGDRTEDAYAQKAYEQLANQQAEAA 297

Query: 301 EAEYVKKLRSNAIIHY 316
             ++VK LR  A I Y
Sbjct: 298 SKDWVKALRKTANIQY 313


>gi|89075561|ref|ZP_01161966.1| putative survival protein SurA [Photobacterium sp. SKA34]
 gi|89048701|gb|EAR54273.1| putative survival protein SurA [Photobacterium sp. SKA34]
          Length = 433

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/314 (12%), Positives = 117/314 (37%), Gaps = 15/314 (4%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL--------K 64
           +K      + ++   +   S  +     ++  T+N  VI   D++  +  +        +
Sbjct: 1   MKTWKYSVLSLMMMGMSATSMAAPQELDQVVMTVNDGVILQSDVNAMLKTVHLNAAEEHQ 60

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
               N  L +  + +LI+E L+ Q+ ++ GI  D + ++      A+   +S +     L
Sbjct: 61  QLPPNNILRQQVMDKLILENLQLQQAQQLGIRIDDSQLDKAIADVAKQRNMSVDQLRQSL 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
              GI    F++ +    +  +        +   L  E+ +  ++M   T +        
Sbjct: 121 ANAGISYAMFREQMRNDMLASEARNIIVRKRVNVLPQEVESLAKQMAKQTQQNVQYNISQ 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             I  ++  ++    K  ++AE+      +         +++     +  G+  ++ +++
Sbjct: 181 IQIRVDEDADKAARDKAKQEAEDIVAQLKKGANFSQLAYRYSKGPKALKGGEWGWMGKAE 240

Query: 242 LHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKI 297
           +   F + ++ + +N    P+ +  G   + I D +    +        ++  + +    
Sbjct: 241 MPTVFADQIQNNGKNAIIGPFRSGVGFHILKINDVKGMPSVSVVEVKARHILIKPSMILS 300

Query: 298 EKHEAEYVKKLRSN 311
           +      ++K+R +
Sbjct: 301 DAAAKAELEKIRQS 314



 Score = 82.8 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/272 (9%), Positives = 83/272 (30%), Gaps = 7/272 (2%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQEL-IVETLKKQEIEKSGITFDSNTVNYFFVQH 109
           +   ++      +  Q        I+  ++ + E   K   +K+    +          +
Sbjct: 154 VLPQEVESLAKQMAKQTQQNVQYNISQIQIRVDEDADKAARDKAKQEAEDIVAQLKKGAN 213

Query: 110 ARNTGLSAEDFSSFLD--KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
                         L   + G         +    I  +            +   I    
Sbjct: 214 FSQLAYRYSKGPKALKGGEWGWMGKAEMPTVFADQIQNNGKNAIIGPFRSGVGFHILKIN 273

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK-DCNKLEKFASKI 226
                 +V    ++     I  + + +    +  ++   +S +   +      + ++   
Sbjct: 274 DVKGMPSVSVVEVKARHILIKPSMILSDAAAKAELEKIRQSIISGKQTFSAAAKAYSEDP 333

Query: 227 -HDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIA 283
              V+ G+  + + +   P F++ ++    +  + P+ +  G   + +  +R +   + A
Sbjct: 334 GSAVNGGQLGWQVPNMYAPAFKDKVETLPVDKISEPFKSSFGWHIVEVEGRRKVDRTDAA 393

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +K   +      K  +    ++++LR+ A I 
Sbjct: 394 MKNRAAQIIFNRKFNEEAQTWLQELRAGAYIE 425


>gi|117617860|ref|YP_855486.1| peptidylprolyl cis-trans isomerase SurA [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117559267|gb|ABK36215.1| peptidylprolyl cis-trans isomerase SurA [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 432

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 31/310 (10%), Positives = 100/310 (32%), Gaps = 15/310 (4%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--- 70
           K L +     +F  +   ++ +  +  ++   +N +V+        +  +K         
Sbjct: 3   KTLISLLTAGLFGAMSQGAFAAPELMDKVLAVVNKDVVLASQQEALVQKVKASAQESGQS 62

Query: 71  -----ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
                 L K A+  LI E+L+ Q  ++ G+      +       A +  ++ +   + L 
Sbjct: 63  LPDDATLRKQALDRLIQESLQLQLADRQGLKISDTQLEQAIQSIAADNKMTLDQLRAQLA 122

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
           ++G+    +++ +  + +  +V +N    +    E E+      +     ++        
Sbjct: 123 REGLTYAQYREEVRREILMNEVRRNQVRRRINISEQEVKQVVDILAKQGQQQQQYHVGHI 182

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDL 242
            +      +   +       E     L +  +        +S    +  G   ++   ++
Sbjct: 183 QVALPDNPSAEQLNAAKSKIERILAALKQGADFRKMAIAESSGPKALEGGDWGWMSPQEM 242

Query: 243 HPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIE 298
                + +    + +   P  +  G+  I + D +    +        ++  + +    E
Sbjct: 243 PTLMAEAVQGTKKGDIVGPLRSGAGLHIIKVFDTKGQQQVVQTEVRARHILIKPSIILSE 302

Query: 299 KHEAEYVKKL 308
           +     +  +
Sbjct: 303 EKAKGMLDGI 312



 Score = 86.3 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/291 (11%), Positives = 82/291 (28%), Gaps = 25/291 (8%)

Query: 50  VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF------------ 97
            I   ++ +R  + +   I+ +  K  V  L  +  ++Q+     I              
Sbjct: 138 EILMNEV-RRNQVRRRINISEQEVKQVVDILAKQGQQQQQYHVGHIQVALPDNPSAEQLN 196

Query: 98  ----DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
                   +     Q A    ++  + S     +G              +   V      
Sbjct: 197 AAKSKIERILAALKQGADFRKMAIAESSGPKALEGGDWGWMSPQEMPTLMAEAVQGTKKG 256

Query: 154 LKYGNLEM-----EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
              G L        I     K +   V+  +    +   P   L  +           + 
Sbjct: 257 DIVGPLRSGAGLHIIKVFDTKGQQQVVQTEVRARHILIKPSIILSEEKAKGMLDGILHDI 316

Query: 209 RLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKG 266
           +       +  EK++      V  G+  +   +   P+F++++ +      + P+ T  G
Sbjct: 317 KSGKASFASLAEKYSEDPGSAVQGGELGWSDPNVYVPEFRDMVNRLQPGQISEPFRTTHG 376

Query: 267 VEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
              + + ++R        +           +  +    ++ +LR  A I  
Sbjct: 377 WHIVQLEERRSQDATNKAQEQRAYQLIYNRRFTEESQAWLDELRDEAYIQI 427


>gi|30248886|ref|NP_840956.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           europaea ATCC 19718]
 gi|81722212|sp|Q82W17|SURA_NITEU RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|30138503|emb|CAD84793.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           europaea ATCC 19718]
          Length = 448

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 51/323 (15%), Positives = 118/323 (36%), Gaps = 22/323 (6%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSS-----RIRTTINGEVITDGDISKRIALLKL 65
            F K    Y V        + +  S++        RI   +N EVIT  +I++ +     
Sbjct: 11  KFRKYWLIYAVFATMLAADVFAQSSYSREDIKPIDRIVAVVNEEVITQQEINEVLQNTVQ 70

Query: 66  QKINGE--------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
           Q             LEK  ++ LI++ ++ Q  ++ G+T   N ++    +  ++  L+ 
Sbjct: 71  QLQRQNTQLPRMEILEKQLLERLILKRIQLQRAKEIGLTVSDNDLDQTLRRIIQDNHLTM 130

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
           ++F   L ++G   N F++ +  + +   + + +   +    E EI    Q   N     
Sbjct: 131 DEFRQVLLQEGTDMNRFREEIRGEILMSRLKEQEVNSRVNVTENEIDNFLQNQANSPAGN 190

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKA 234
              R     +  ++  ++  ++ R K AE +   L +  +      +F+     +  G+ 
Sbjct: 191 EEYRIAHILVQISEQMDEAQIEARHKRAETAYESLRQGADFVRVSAEFSDAPDAMQGGEL 250

Query: 235 QYLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG-----GEIALKAYL 288
            +     L  P  + L+       T    +  G   + + ++R         E     ++
Sbjct: 251 GWRPLGQLGSPFTEMLVNMQPGEVTPVVRSPVGFHILKLLERRQQEQKVTIIEQTHAQHI 310

Query: 289 SAQNTPTKIEKHEAEYVKKLRSN 311
             + +    E+   + + +L   
Sbjct: 311 LIKVSELVSEEDAHQLINQLMER 333



 Score =  100 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 81/280 (28%), Gaps = 10/280 (3%)

Query: 46  INGEV-ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           +N  V +T+ +I   +   +     G  E      L+  + +  E +       + T   
Sbjct: 165 VNSRVNVTENEIDNFLQN-QANSPAGNEEYRIAHILVQISEQMDEAQIEARHKRAETAYE 223

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND------FMLKYGN 158
              Q A    +SAE   +    QG                  +V          +     
Sbjct: 224 SLRQGADFVRVSAEFSDAPDAMQGGELGWRPLGQLGSPFTEMLVNMQPGEVTPVVRSPVG 283

Query: 159 LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
             +     +++ +               I  ++L ++    + I    E         + 
Sbjct: 284 FHILKLLERRQQEQKVTIIEQTHAQHILIKVSELVSEEDAHQLINQLMERIHNGADFMDV 343

Query: 219 LEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAICDKRD 277
            +  +      + G   ++   D  P+F+  +        + P  T  G   I + ++R 
Sbjct: 344 AKAHSEDASASAGGDLGWVSPGDTVPEFEQAMNALLPGQVSPPVRTPFGWHLIKVIERRS 403

Query: 278 LGGEIALKAY-LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                  +           K +    E++++LR  A + Y
Sbjct: 404 QDVSERQQREAARHTIHARKADAIVQEWLQQLRDQAYVEY 443


>gi|253988050|ref|YP_003039406.1| peptidyl-prolyl cis-trans isomerase SurA [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253779500|emb|CAQ82661.1| chaperone SurA precursor (peptidyl-prolyl cis-trans isomerase)
           [Photorhabdus asymbiotica]
          Length = 433

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 100/304 (32%), Gaps = 16/304 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI--------NGEL 72
           +++        ++ +     +I   +N  V+ + DI+  +  +K               L
Sbjct: 7   LILGLMFSVSTAFAAPQQMDKIAAVVNNGVVLESDINSLLQSVKRDAQHAGQQIPDEHTL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  ++ GIT    T++      A    ++ +     +   G+  +
Sbjct: 67  RHQILERLIMDNILLQMAKQMGITIPDQTLDSTIANIAAQNHITRDQMKHRIVADGMSFD 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + +  +V  N+   +   L  EI    +++ N    +  +      IP  + 
Sbjct: 127 TYRNQIRKEMLIAEVRNNEVRRRVTILPQEIDTLAKQISNQNANDSELNISHILIPLPEN 186

Query: 193 QNQGFVQKRI---KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
            +Q  ++K                        +++    +  G   +    +L   F   
Sbjct: 187 PDQTQMEKATAVVHKIMSELKNGVDFGKLAIAYSADPQALKGGNMGWSKLQELPTLFAAQ 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                +     P  +  G   + + D R     +        ++  + +P   ++     
Sbjct: 247 LQSAQKGAIVGPIRSGVGFHILKVNDIRGGNATIAVTEVHARHILLRISPVMTDEQARAK 306

Query: 305 VKKL 308
           ++++
Sbjct: 307 LQQI 310



 Score = 84.7 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 89/305 (29%), Gaps = 18/305 (5%)

Query: 28  VPIVSYKSWAMSSRIRTTI-NGEV-----ITDGDISKRIALLKLQKINGELEKIAVQELI 81
           +   +Y++      +   + N EV     I   +I      +  Q  N     I+   LI
Sbjct: 123 MSFDTYRNQIRKEMLIAEVRNNEVRRRVTILPQEIDTLAKQISNQNANDSELNIS-HILI 181

Query: 82  V-----ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
                 +  + ++         S   N            +        +           
Sbjct: 182 PLPENPDQTQMEKATAVVHKIMSELKNGVDFGKLAIAYSADPQALKGGNMGWSKLQELPT 241

Query: 137 YLAIQSIWPD--VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
             A Q        +        G   +++   +     I V E   R +L  I       
Sbjct: 242 LFAAQLQSAQKGAIVGPIRSGVGFHILKVNDIRGGNATIAVTEVHARHILLRISPVMTDE 301

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKK 252
           Q    K  + A + R       +  ++F+      +  G   +       P F++  ++ 
Sbjct: 302 QA-RAKLQQIAGDIRSGKTDFADAAKEFSEDPGSALRGGDLGWSTPDIFDPAFRDALMRL 360

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           ++   + P  +  G   I + D R +   ++A K          K  +    ++++ R++
Sbjct: 361 NKGEISQPIHSSFGWHLIQLLDTRKVDKTDVAQKDRAYRMLFNRKFTEEAQSWMQEQRAS 420

Query: 312 AIIHY 316
           A +  
Sbjct: 421 AYVKI 425


>gi|296134602|ref|YP_003641844.1| SurA domain protein [Thiomonas intermedia K12]
 gi|295794724|gb|ADG29514.1| SurA domain protein [Thiomonas intermedia K12]
          Length = 459

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/297 (13%), Positives = 93/297 (31%), Gaps = 21/297 (7%)

Query: 31  VSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--------ELEKIAVQELIV 82
            ++ S   S  I   +  +VITD D+  R+   + Q            +L    + ++I 
Sbjct: 45  STFSSARTSDGIAAIVGNQVITDYDLQLRVEATRQQAQAAGATLPSAAQLRSQVLNQMID 104

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           E    Q  E+ G+  + +T++    Q A N  L+  +  S ++K+G+G + ++  L  + 
Sbjct: 105 EVALAQYAEQIGMGVNQDTLDRAIAQVASNNKLTVPELRSAIEKEGMGWSTYRDQLKREI 164

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV----LFSIPDNKLQNQGFV 198
           +   + +          E EI     K             +    L    +        V
Sbjct: 165 LISRLRERSMAQLPTVSESEIDEFLSKQDAAAASPQAAYDIAQIFLPVAQNATEAQVAAV 224

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           +++I   +              + +        G       + L   F   +        
Sbjct: 225 KQKIDAIDAKLKAGADFAQLATQDSQGEGAKRGGDLGMRPANRLPTLFVDTVRNLQPGQI 284

Query: 258 TNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
           +    +  G   + +            A+++ +         +       +++R+ A
Sbjct: 285 SPVIRSAAGFHILKLLQVSGETAAPTTAMQSEVREIVLSASTDA------QRIRAKA 335



 Score = 60.5 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 41/129 (31%), Gaps = 3/129 (2%)

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QN 248
             Q      +    A+  +    +   K  + +         G   ++L   L P     
Sbjct: 327 DAQRIRAKAELDSIAQAVQNGKVQFSEKARELSQDPATAAKGGALGWVLPGQLDPVLDAA 386

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL-SAQNTPTKIEKHEAEYVKK 307
           L + +  + + P V    V  + + D+     E + K  L        K  +   E V+ 
Sbjct: 387 LQRLNPGDVSAPIVMGNKVVLLQLVDRAVRPLEASQKRALAREVLQRQKAAEDFDELVRD 446

Query: 308 LRSNAIIHY 316
           +R+   +H 
Sbjct: 447 VRARTYVHI 455


>gi|254491890|ref|ZP_05105069.1| SurA N-terminal domain family [Methylophaga thiooxidans DMS010]
 gi|224463368|gb|EEF79638.1| SurA N-terminal domain family [Methylophaga thiooxydans DMS010]
          Length = 421

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 111/318 (34%), Gaps = 20/318 (6%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE---- 71
           +  Y +  +     +++        RI   +N EVI + ++ +    ++ Q    +    
Sbjct: 1   MIKYLMAALLLTTNVLA----QPLDRITAVVNDEVILESELMEMQQTVRQQLRQRDAAIP 56

Query: 72  ----LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
               L K  ++ LI++ L+ Q  E+ G+    + +N    Q A N  ++   F   L+  
Sbjct: 57  PSEVLNKQVLERLIMQRLQLQRAEQVGVRVGDDALNAALKQIANNNNMNLRQFRDVLEDD 116

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
           G   ++F+  +  + I   + K+    +    E E+             E   +     +
Sbjct: 117 GYNFSNFRNTIREEMIITRLRKSQVEDRVVVSEREVDNFLTTQTIQEGGEVEYQLQHILV 176

Query: 188 PDNKLQNQGFV---QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
              +  +   V   +++++  +       +       ++   + +  G+  +    +L  
Sbjct: 177 SMPEAASPEQVQEAEQQLQKVQALLDEGGEFSEVAAGYSDGQNALEGGELGWRKHGELPS 236

Query: 245 QF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG---GEIALKAYLSAQNTPTKIEKH 300
            F + +        +    +  G   + + DK+       +  L +++  +       + 
Sbjct: 237 LFAEVVPDLEVGEVSQALRSGSGFHLVRVKDKKSQELHLVKQTLASHILIRANELTSAEQ 296

Query: 301 EAEYVKKLRSN-AIIHYY 317
             E +++LR   A    +
Sbjct: 297 AEERLQQLRQRIAKGENF 314



 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 50/137 (36%), Gaps = 3/137 (2%)

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESD 241
               I  N+L +    ++R++   +   +           +      +  G   +     
Sbjct: 282 SHILIRANELTSAEQAEERLQQLRQRIAKGENFAELARAHSDDTGSAIDGGSLGWTSPGV 341

Query: 242 LHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG-GEIALKAYLSAQNTPTKIEK 299
           + P+F+  +   +    ++ + ++ G   I + D+R+    +   +     Q    KI++
Sbjct: 342 MVPEFEEKMNALAIGEMSDVFESRFGWHLIKVYDRREQNMADEFKRNKAREQIRQRKIDE 401

Query: 300 HEAEYVKKLRSNAIIHY 316
               +++ +R  A + Y
Sbjct: 402 ELESWLRAMRDEAYVEY 418


>gi|149907522|ref|ZP_01896269.1| survival protein surA [Moritella sp. PE36]
 gi|149809192|gb|EDM69121.1| survival protein surA [Moritella sp. PE36]
          Length = 428

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 34/314 (10%), Positives = 104/314 (33%), Gaps = 19/314 (6%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDIS--------KRIALLKLQK 67
           +    +  +  +    +         +   +N EVI   D++        +     +   
Sbjct: 1   MLKTLLSGVIVVTSWQAQAELTKLDEVIAIVNEEVILASDVNTLTRSVTARATKAGQTLP 60

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
               L + A+ +LI+++L+ Q  +K G+   +  +       A+    + E     +   
Sbjct: 61  SQEVLTQQALDKLIIDSLQLQMAKKMGMRISNAQLEDTLNNIAKGDNQTVEQLRQSVVAD 120

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
           G   N +K+ +  Q +  +V +     +    + ++      +     +    R     +
Sbjct: 121 GGDFNDYKEEIRTQILTNEVQRMQMRRRITISDQDVDNLIAIIDEQGQKNRQYRVNHIML 180

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPK---DCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
                 +   ++       + + +L       N     ++    +  G   ++  +++  
Sbjct: 181 RVPNEADNATMEALQTKIADIQTQLNAGEPFANLALALSAGPKALDGGDWGWMNINEMPT 240

Query: 245 QF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG---GEIALKAYLSAQ----NTPTK 296
            F + +    + +   P  +  G+  I + D R +     +     ++  +     +  K
Sbjct: 241 LFAEAVTNAKKGDIIGPIRSGAGLHIIQVSDMRGVETVLTKEVNARHILIKPSVILSDDK 300

Query: 297 IEKHEAEYVKKLRS 310
            +    EY+ +++S
Sbjct: 301 AQSLLNEYLTRIKS 314



 Score = 75.9 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/275 (9%), Positives = 71/275 (25%), Gaps = 11/275 (4%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGI-TFDSNTVNYFFVQH 109
           I+D D+   IA++  Q       +  V  +++    + +             +       
Sbjct: 151 ISDQDVDNLIAIIDEQGQKN--RQYRVNHIMLRVPNEADNATMEALQTKIADIQTQLNAG 208

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM-----EIP 164
                L+    +      G                  V         G +        I 
Sbjct: 209 EPFANLALALSAGPKALDGGDWGWMNINEMPTLFAEAVTNAKKGDIIGPIRSGAGLHIIQ 268

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
            +  +     + + +    +   P   L +        +     +    +     + ++ 
Sbjct: 269 VSDMRGVETVLTKEVNARHILIKPSVILSDDKAQSLLNEYLTRIKSGDAEFAELAKAYSD 328

Query: 225 KI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR-DLGGE 281
                V  G+  +   +   P F+       +   +  + +  G   + + D+R     +
Sbjct: 329 DTGSAVKGGELGWADPNIYVPAFKLALQDLKKGEISPTFRSSHGWHIVQLIDRRTQDTTD 388

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            A +          +  +    ++ +L+  A I  
Sbjct: 389 KANRQKAWQLLYNRRAAEESQSWLNELKQEAYIRI 423


>gi|322420756|ref|YP_004199979.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
 gi|320127143|gb|ADW14703.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
          Length = 323

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/324 (15%), Positives = 110/324 (33%), Gaps = 20/324 (6%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK- 67
           +S   KL+      +  C +P  S K    +      +NG VIT  ++ + +  L  Q  
Sbjct: 1   MSALKKLIPVTVAALALCALPGCSDKGQTGAP--VVKVNGSVITKPELDRAVKALLAQNK 58

Query: 68  -----INGELEKI---AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                   +++K    A+++L    L  QE +K  I  D         Q  R +  + E+
Sbjct: 59  VTQALPPEQMKKAADSALEQLTSAELLYQEGKKLEI-KDLEQQVEQKYQKNRTSFPTKEE 117

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI-TVREY 178
           +   L   G+ +   ++ +  + +  + V   F  K    + E        K     +  
Sbjct: 118 YEKALKATGMTEAEVREMMRKEIVVNNFVDKQFSSKATCSDAEARKFYDDNKAKLFEKGE 177

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESR---LRLPKDCNKLEKFASKIHDVSIGKAQ 235
            +R     +  ++       +K  + AE       +        +  ++     + G+  
Sbjct: 178 RLRARHILVSVDQKGGPEEKKKAREKAEALLKRVQKGEDFAAVAKVESTCPSRANGGELG 237

Query: 236 YLLESDLHPQFQNLLKKS--QNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQ 291
              +  + P F+        +   +    T+ G   I + ++     +    +K  ++  
Sbjct: 238 VFGKGQMTPPFEKAAFALKGKGELSKVVETEFGYHIIKLEERIAPSNDRFEDVKFQIAQY 297

Query: 292 NTPTKIEKHEAEYVKKLRSNAIIH 315
               +  K  A ++ +LR  A I 
Sbjct: 298 LKKEQTRKAVAAFLAELRHKAKIE 321


>gi|145638627|ref|ZP_01794236.1| stationary-phase survival protein SurA [Haemophilus influenzae
           PittII]
 gi|145272222|gb|EDK12130.1| stationary-phase survival protein SurA [Haemophilus influenzae
           PittII]
          Length = 311

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 51/321 (15%), Positives = 113/321 (35%), Gaps = 24/321 (7%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +  F+  L ++ +  + C+  +          R+  T++G  + +  +       +    
Sbjct: 1   MKKFV--LRSFLLAALGCVAFV---SMAQAEERVVATVDGIPVLESQV-------RANMG 48

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
                + A+ ++I + L ++ +++SG+  D   +++     A   GL+   F   LD QG
Sbjct: 49  KKGDRQSAIDKIIDDILVQKAVQESGVKIDPREIDHVVEDTAARNGLTYGQFLDALDYQG 108

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI---------PANKQKMKNITVREYL 179
           I  N F+Q +A Q +   V              E+          A ++        +  
Sbjct: 109 ISLNAFRQQIANQMMMGAVRNKAIQESIDVTREEVVALGQKMLEEAKEKGTAQKVTGKEY 168

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQY-L 237
               +    +  L +    ++  K   +         +   K++       + G   Y  
Sbjct: 169 EVRHILLKLNPLLNDAQAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAF 228

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTK 296
            E+      Q ++K  Q   + P+ T+ G   + +   RD              +   T+
Sbjct: 229 PETYAPQFAQTVVKSKQGVISAPFKTEFGWHILEVTGTRDGDLTSEAYTQKAYERLVNTQ 288

Query: 297 IEKHEAEYVKKLRSNAIIHYY 317
           ++    ++VK LR  A I Y+
Sbjct: 289 LQDATNDWVKALRKRANIQYF 309


>gi|148827655|ref|YP_001292408.1| thymidylate kinase [Haemophilus influenzae PittGG]
 gi|148718897|gb|ABR00025.1| thymidylate kinase [Haemophilus influenzae PittGG]
          Length = 311

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 57/316 (18%), Positives = 115/316 (36%), Gaps = 20/316 (6%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMS-SRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           +        +   +  V++ S A +  R+  T++G  I +  +       +         
Sbjct: 1   MKKFVLRSFLLATLGCVAFTSMAQAAERVVATVDGIPILESQV-------RANMGKKGDR 53

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           + A+ ++I + L ++ +++SG+  D   +++     A   GL+   F   LD QGI  N 
Sbjct: 54  QSAIDKIIDDILVQKAVQESGVKIDPREIDHIVEDTAARNGLTYGQFLDALDYQGISLNT 113

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEI----------PANKQKMKNITVREYLIRTV 183
           F+Q +A Q +   V         G    E+             K   + +  +EY +R +
Sbjct: 114 FRQQIANQMVMGAVRNKAIQESIGVTREEVVALGQKMLEEAKEKGTAQKVMGKEYEVRHI 173

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY-LLESDL 242
           L  +       Q   Q     ++    +       L+     +   + G   Y   E+  
Sbjct: 174 LLKLNPLLNDAQAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPETYA 233

Query: 243 HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKHE 301
               Q ++K  Q   + P+ T+ G   + +   RD              +   T+++   
Sbjct: 234 PQFAQIVVKSKQGVISAPFKTEFGWHILEVTGVRDGDLTAEAYTQKAYERLVNTQLQDAT 293

Query: 302 AEYVKKLRSNAIIHYY 317
            ++VK LR  A I Y+
Sbjct: 294 KDWVKALRKRANIQYF 309


>gi|197118895|ref|YP_002139322.1| PpiC-type peptidylprolyl cis-trans isomerase [Geobacter
           bemidjiensis Bem]
 gi|197088255|gb|ACH39526.1| peptidylprolyl cis-trans isomerase, PpiC-type [Geobacter
           bemidjiensis Bem]
          Length = 351

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/298 (14%), Positives = 95/298 (31%), Gaps = 17/298 (5%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI---------NGELEKIAVQELIVET 84
            + A  S     +NG  IT  D+ + + ++  Q             + E  A+++L    
Sbjct: 51  PAAAQKSPAVVRVNGTPITKLDVERAVKVMLAQNKVDQPIPPELQKQAESAALEQLTSAE 110

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
           L  QE  KS I      +     Q+ +     AE   +    +       +++   + + 
Sbjct: 111 LLYQEASKSKIPDLDKMIEQKVSQNRQKFKTEAELVEALSALEMTLP-DLEEFTRKEIVL 169

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNI-TVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
              +   F  K    + E+        N    +   ++     +  ++       +K  +
Sbjct: 170 STYIAEHFQNKASVSDEEVKKFYDDNLNQYFKKPESVKASHILVGTDEKSTPEDKKKAKE 229

Query: 204 DAEESRLRLPKDCNKLEK---FASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN 259
            AE    RL    +        ++       G         + P+F+    K      + 
Sbjct: 230 KAEALLKRLQAGEDFAAVAKGESTCPSASEGGDLGEFGRGQMVPEFEEAAFKLKPGEMSG 289

Query: 260 PYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
              T+ G   I +  K++   E    +K  +       K ++  + ++ +L+  A I 
Sbjct: 290 VVETKFGYHIIKVTGKQEAAAEKLENVKETIVEFLKKQKEQQELSNFIDELKKKAKIE 347


>gi|319940878|ref|ZP_08015217.1| hypothetical protein HMPREF9464_00436 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805760|gb|EFW02541.1| hypothetical protein HMPREF9464_00436 [Sutterella wadsworthensis
           3_1_45B]
          Length = 460

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 49/298 (16%), Positives = 98/298 (32%), Gaps = 18/298 (6%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------LEKIAVQELIVE 83
           +  +     RI   +N ++IT+ ++ +R+  + +              L    ++ LI E
Sbjct: 40  APAASGELDRIVAVVNNDIITEHELEQRVHTVAINLRRQNIQLPAMELLRAQVLERLISE 99

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
               Q   ++GI  D   VN    Q AR   LS E+    L   G+    F+  +  +  
Sbjct: 100 RAILQRARQTGIRVDDQMVNASVEQIARQNNLSIEELRQRLAADGVNFASFRNEIRDEIT 159

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
              + + +   K    E EI A   +   I   + +   V   +   +   +    K   
Sbjct: 160 TQRLREREVNEKIDISESEIDAYLAEQAGIKGDDKMEYHVEHILLPVETPAENDSVKTAA 219

Query: 204 DAEESRLR-LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPY 261
           ++   R R      +    F+     +  G   +   +DL   F + L   S   +    
Sbjct: 220 ESLAKRARDGENFSSLAASFSRADDAMKGGDLGWRSLNDLPATFAEALRANSTPGSVYVV 279

Query: 262 VTQKGVEYIAICDKRD--------LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            +Q+      + DKRD           E     ++    +    E      +  +++ 
Sbjct: 280 SSQRAWHVFKLEDKRDGVQAKLGGGPVEQTHARHILMFVSDITPEGDVIRRLNDIKNR 337



 Score = 94.7 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/282 (10%), Positives = 79/282 (28%), Gaps = 11/282 (3%)

Query: 46  INGEV-ITDGDISKRIALLKLQKINGELEKIAVQELI-------VETLKKQEIEKSGITF 97
           +N ++ I++ +I   +A     K + ++E      L+        +++K      +    
Sbjct: 168 VNEKIDISESEIDAYLAEQAGIKGDDKMEYHVEHILLPVETPAENDSVKTAAESLAKRAR 227

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
           D    +      +R           +     +     +   A  +     V +     + 
Sbjct: 228 DGENFSSLAASFSRADDAMKGGDLGWRSLNDLPATFAEALRANSTPGSVYVVSSQRAWHV 287

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
               +     Q        E      +     +       +++        +        
Sbjct: 288 FKLEDKRDGVQAKLGGGPVEQTHARHILMFVSDITPEGDVIRRLNDIKNRVQSGEADFAT 347

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR 276
                +        G   +L   D  P+F+ ++ K      ++P  T  G   I + ++R
Sbjct: 348 MARLHSVDSTATRGGDLGWLQPGDTVPEFEGVMNKLKPGQISDPIRTPYGYHLIQVVERR 407

Query: 277 DLGGEIALKAYL--SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                   +  +         K+ +   E+ ++LR  A +  
Sbjct: 408 TEKDGNPERMRVAARQAIRQKKLAEASYEWERELRDQAFVEI 449


>gi|294338549|emb|CAZ86878.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase, surA
           [Thiomonas sp. 3As]
          Length = 472

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/297 (13%), Positives = 93/297 (31%), Gaps = 21/297 (7%)

Query: 31  VSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--------ELEKIAVQELIV 82
            ++ S   S  I   +  +VITD D+  R+   + Q            +L    + ++I 
Sbjct: 58  STFSSARTSDGIAAIVGNQVITDYDLQLRVEATRQQAQAAGATLPSAAQLRSQVLNQMID 117

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           E    Q  E+ G+  + +T++    Q A N  L+  +  S ++K+G+G + ++  L  + 
Sbjct: 118 EVALAQYAEQIGMGVNQDTLDRAIAQVASNNKLTVPELRSAIEKEGMGWSTYRDQLKREI 177

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV----LFSIPDNKLQNQGFV 198
           +   + +          E EI     K             +    L    +        V
Sbjct: 178 LISRLRERSMAQLPTVSESEIDEFLSKQDAAAASPQAAYDIAQIFLPVAQNATEAQVAAV 237

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           +++I   +              + +        G       + L   F   +        
Sbjct: 238 KQKIDAIDAKLKAGAAFAQLATQDSQGEGAKRGGDLGMRPANRLPTLFVDTVRNLQPGQI 297

Query: 258 TNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
           +    +  G   + +            A+++ +         +       +++R+ A
Sbjct: 298 SPVIRSAAGFHILKLLQVSGETAAPTTAMQSEVREIVLSASTDA------QRIRAKA 348



 Score = 60.5 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 41/129 (31%), Gaps = 3/129 (2%)

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QN 248
             Q      +    A+  +    +   K  + +         G   ++L   L P     
Sbjct: 340 DAQRIRAKAELDSIAQAVQNGKVQFSEKARELSQDPATAAKGGALGWVLPGQLDPVLDAA 399

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL-SAQNTPTKIEKHEAEYVKK 307
           L + +  + + P V    V  + + D+     E + K  L        K  +   E V+ 
Sbjct: 400 LQRLNPGDVSAPIVMGNKVVLLQLVDRAVRPLEASQKRALAREVLQRQKAAEDFDELVRD 459

Query: 308 LRSNAIIHY 316
           +R+   +H 
Sbjct: 460 VRARTYVHI 468


>gi|114569774|ref|YP_756454.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Maricaulis maris
           MCS10]
 gi|114340236|gb|ABI65516.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Maricaulis maris
           MCS10]
          Length = 435

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 95/293 (32%), Gaps = 19/293 (6%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMS-SRIRTTINGEVITDGDISKRIALLK 64
            T++   +       + ++  + P+ +  + A +   +   +N E IT  D+  R+ L+ 
Sbjct: 7   RTNMRLLMTCAKRIVLSLLAFVAPMCATNAHAQTTEGVAALVNDEPITTVDVRNRMRLII 66

Query: 65  LQKINGELEK--------IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
                 ++++         A++ L+ E L+ Q   +  I      +    +  A     +
Sbjct: 67  ASTGMSQIDEGTLSRIQDQAMRGLVDEHLQLQAASEYDIEVSDAEITNSLLDLADRNNTT 126

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            +     L   G+  +  +  L  +  W  +V   +  +    E +I    +++     +
Sbjct: 127 IDVIIQDLQSSGVDVSTLRHQLEAEIAWQIIVNGRYGSRIRISEQQIELALERLAASASQ 186

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
               R             +    +R+        +         +F+      + G   +
Sbjct: 187 -PQFRIFEMLFEVPGPGQEEQTIQRVITVMNQLQQGATFPELARQFSDAPSAANGGDIGW 245

Query: 237 LLESDLHPQFQNLLKKSQNN---------TTNPYVTQKGVEYIAICDKRDLGG 280
           +  S L P+   ++ + +            +NP     G   IA+   RD   
Sbjct: 246 ITASQLQPEVAAIMPQMRGQYDQSGGRGALSNPIEVPGGFMVIALVGARDGTT 298


>gi|229846544|ref|ZP_04466652.1| stationary-phase survival protein SurA [Haemophilus influenzae
           7P49H1]
 gi|229810637|gb|EEP46355.1| stationary-phase survival protein SurA [Haemophilus influenzae
           7P49H1]
          Length = 311

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/316 (17%), Positives = 113/316 (35%), Gaps = 20/316 (6%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAM-SSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           +        +   +  V++ S A    R+  T++G  + +  +       +         
Sbjct: 1   MKKFILKSFLLATLGCVAFASMAQAEERVVATVDGIPVLESQV-------RANMGKKGDR 53

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           + A+ ++I + L ++ +++SG+  D   +++     A   GL+   F   LD QGI  N 
Sbjct: 54  QSAIDKIIDDILVQKAVQESGVKIDPREIDHIVEDTAARNGLTYGQFLDALDYQGISLNT 113

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEI----------PANKQKMKNITVREYLIRTV 183
           F+Q +A Q +   V              E+             K   + +  +EY +R +
Sbjct: 114 FRQQIANQMVMGAVRNKAIQESIDVTREEVVALGQKMLEEAKEKGTAQKVMGKEYEVRHI 173

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY-LLESDL 242
           L  +       Q   Q     ++    +       L+     +   + G   Y   E+  
Sbjct: 174 LLKLNPLLNDAQAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPETYA 233

Query: 243 HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKHE 301
               Q ++K  Q   + P+ T+ G   + +   RD              +   T+++   
Sbjct: 234 PQFAQTVVKSKQGVVSAPFKTEFGWHILEVTGVRDGDLTAEAYTQKAYERLVNTQLQDAT 293

Query: 302 AEYVKKLRSNAIIHYY 317
            ++VK LR  A I Y+
Sbjct: 294 NDWVKALRKRANIQYF 309


>gi|220919568|ref|YP_002494872.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219957422|gb|ACL67806.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 317

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/310 (11%), Positives = 88/310 (28%), Gaps = 19/310 (6%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL------QKIN 69
           +     L   C     +      +      +NGE I    +++ +   +       Q   
Sbjct: 8   ILIATALAAGCGRCGGARSGERPAPGAVAVVNGEPIAPDAVARELRDAQAGAEGQGQATG 67

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
             L +  + +L+   L  Q+     I    + V   F++           F   L ++ +
Sbjct: 68  DVLRRRVLDDLVDRALLLQQARARSIVVGQDQVERAFLRLRAE--YPGTHFDDLLAQERL 125

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                K  L  Q     + + +   +   ++ E+     +          +  +   +  
Sbjct: 126 SQAELKARLKDQLTVERLFEQEVFPQVQVVDAEVERYYAEHGAEFQEPERVHVLQIVV-- 183

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD-LHPQFQN 248
                    ++  +  E+ R           + +      S G    +         F  
Sbjct: 184 ------ASREEAAQVREKLRRNPQTFAEVARRSSIAPEGKSGGDLGLIGRGAGFPEVFDT 237

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVK 306
                 N  ++   +  G     + +K+          +A ++ +    K    +AEY++
Sbjct: 238 CFSLPVNVISDVTPSPYGFHLFKVVEKKPAQRRTLEQARAEIAEKLGREKRAGAQAEYLE 297

Query: 307 KLRSNAIIHY 316
            LR  A I  
Sbjct: 298 ALRKRAQIDI 307


>gi|330818272|ref|YP_004361977.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia gladioli
           BSR3]
 gi|327370665|gb|AEA62021.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia gladioli
           BSR3]
          Length = 451

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/338 (12%), Positives = 112/338 (33%), Gaps = 30/338 (8%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVP-----IVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
                 F  +++    ++    V       +      ++  +   +N  VIT  ++ +R+
Sbjct: 1   MKKSLRFAAIVSGLAAVMSLLSVTPAAAQALGSSGATLADEVVAVVNNGVITARELDQRV 60

Query: 61  ALLKLQKING--------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
            L+  +            EL    + +++VE ++ Q+ +  GI     TV     + A  
Sbjct: 61  GLISRRLQQQKVPVPPPDELRSQVLNQMVVERIQLQKAKDDGIEVSDATVQSTLQRLAAA 120

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
            G++ + + + L+  G+  + F      + I   + + +   K    + E+ +     + 
Sbjct: 121 NGMTVDQYRAQLEALGVPWSTFSGDARNELILSRLREKEVDSKITVTDAEVASYIASQRG 180

Query: 173 I---TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA--EESRLRLPKDCNKLEKFASKIH 227
               + ++  +  +  + P N  Q+Q  + ++  D   +++              +    
Sbjct: 181 PNSGSQQDVRLEHIFVAAPQNAPQDQIDIAQKKADGLLKQALASGADFEKLARNSSEAKD 240

Query: 228 DVSIGKAQYLLESDLH-PQFQNLLKKSQNNTTN-PYVTQKGVEYIAICDKRDLGGE---- 281
             + G   +     L     Q + +      +        G E + + D+R   G     
Sbjct: 241 AKTGGDLGFKAPGSLPADVVQAVSQLRPGQVSPNLIRVPDGFEIVRLVDRRPASGTVGAS 300

Query: 282 ----IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                    ++  +    K E    + +  +R+   I 
Sbjct: 301 PKIVQTHVRHILLRVGEGKSESQARQQLIDIRNQ--IE 336



 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 53/145 (36%), Gaps = 2/145 (1%)

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGK 233
           + +          +   + +++   ++++ D            N    ++        G 
Sbjct: 300 SPKIVQTHVRHILLRVGEGKSESQARQQLIDIRNQIEAGGDFANFARTYSQDGSASQGGD 359

Query: 234 AQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL-SAQ 291
             ++   +  P+F+  + +      + P  T+ G   I +  +RD  G +  +  +    
Sbjct: 360 LGWISPGETVPEFERAMSQLQDGQISQPVRTEYGYHLIQVLGRRDAEGSVQKQMDIARQA 419

Query: 292 NTPTKIEKHEAEYVKKLRSNAIIHY 316
               K E+  A+++++LR ++ +  
Sbjct: 420 IGQRKAEQAYADWLRELRDSSYVQI 444


>gi|197124850|ref|YP_002136801.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           K]
 gi|196174699|gb|ACG75672.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           K]
          Length = 317

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/310 (11%), Positives = 88/310 (28%), Gaps = 19/310 (6%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL------QKIN 69
           +     L   C     +      +      +NGE I    +++ +   +       Q   
Sbjct: 8   ILIATALAAGCGRCGAARSGERPAPGAVAVVNGEPIAPDAVARELRDAQAGAEGQGQATG 67

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
             L +  + +L+   L  Q+     I    + V   F++           F   L ++ +
Sbjct: 68  DVLRRRVLDDLVDRALLLQQARARSIVVGQDQVERAFLRLRAE--YPGTHFDDLLAQERL 125

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                K  L  Q     + + +   +   ++ E+     +          +  +   +  
Sbjct: 126 SQAELKARLKDQLTVERLFEQEVFPQVQVVDAEVERYYAEHGAEFQEPERVHVLQIVV-- 183

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD-LHPQFQN 248
                    ++  +  E+ R           + +      S G    +         F  
Sbjct: 184 ------ASREEATQVREKLRRNPQTFAEVARRSSIAPEGKSGGDLGLIGRGAGFPEVFDT 237

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVK 306
                 N  ++   +  G     + +K+          +A ++ +    K    +AEY++
Sbjct: 238 CFSLPVNVISDVTPSPYGFHLFKVVEKKPAQRRTLEQARAEIAEKLGREKRAGAQAEYLE 297

Query: 307 KLRSNAIIHY 316
            LR  A I  
Sbjct: 298 ALRKRAQIDI 307


>gi|308051066|ref|YP_003914632.1| peptidylprolyl isomerase [Ferrimonas balearica DSM 9799]
 gi|307633256|gb|ADN77558.1| Peptidylprolyl isomerase [Ferrimonas balearica DSM 9799]
          Length = 428

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/305 (11%), Positives = 95/305 (31%), Gaps = 14/305 (4%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK--------LQ 66
           +L    +  +  ++   +         +   +N  VI   +I +R+  +K          
Sbjct: 2   ILRQLLMGAMAALMFGQALAQPQPLDEVAVLVNDGVILKSEIDERMTSVKRGALQAGQQL 61

Query: 67  KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
             +  L    +  LI E+L+ Q  E+ G+      ++      AR  G++ +     ++ 
Sbjct: 62  PSDAALRTQVIDRLIAESLQLQMAERMGLVISDIQLDQTLENMAREQGMTLQGLRQEIES 121

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
            G     +++ +  +     V +     +      EI    + +    +++         
Sbjct: 122 DGTNYAAYREQIRREITIGQVQRIQVQRRVQISPQEINTLVEMINEQGLQDAEFHVGHIL 181

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
           I     +     + R     E               +S    +  G   ++  +++   F
Sbjct: 182 IDFGGDET--AARARADKVLELLEGGADFAQTALAASSGPKALEGGDWGFMNINEMPTLF 239

Query: 247 -QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK---AYLSAQNTPTKIEKHEA 302
            + +    + +   P  +  G   I I D R    +   +    ++  + +P   E    
Sbjct: 240 AEVVKDAKKGDIIGPIKSGAGFHIITIYDTRGQEVQEVAEVNARHILLKPSPILSEDMAK 299

Query: 303 EYVKK 307
             + +
Sbjct: 300 TLLDE 304



 Score = 82.8 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/286 (10%), Positives = 71/286 (24%), Gaps = 22/286 (7%)

Query: 50  VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS---------- 99
            IT G + +     ++Q    E+  +   E+I E   +      G               
Sbjct: 136 EITIGQVQRIQVQRRVQISPQEINTLV--EMINEQGLQDAEFHVGHILIDFGGDETAARA 193

Query: 100 --NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
             + V       A     +    S     +G                  V         G
Sbjct: 194 RADKVLELLEGGADFAQTALAASSGPKALEGGDWGFMNINEMPTLFAEVVKDAKKGDIIG 253

Query: 158 NLEM-----EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
            ++       I     + + +     +    +   P   L          +   + +   
Sbjct: 254 PIKSGAGFHIITIYDTRGQEVQEVAEVNARHILLKPSPILSEDMAKTLLDEFMADVKDGK 313

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYI 270
                   + +         G   +   +   P F++   +      + P+ +  G   +
Sbjct: 314 ADFGELAREHSDDPGSAARGGDLGWADPNMYVPAFRDTLARLKVGEYSEPFRSSHGWHVV 373

Query: 271 AICDKRDLGG-EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            + D+R     + A            K  +    + +++R+ A I 
Sbjct: 374 QLLDRRVTDATDQANSDRAYQLLFRRKFGEQVNAWQEEMRAAAYIE 419


>gi|253700324|ref|YP_003021513.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
 gi|251775174|gb|ACT17755.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
          Length = 355

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/298 (14%), Positives = 96/298 (32%), Gaps = 17/298 (5%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI---------NGELEKIAVQELIVET 84
            + A  S     +NG  IT  D+ + + ++  Q             + E  A+++L    
Sbjct: 55  PAAAQKSPAVVRVNGTPITQLDVERAVKVMLAQNKIDQPLPPELQKQAESAALEQLTAAE 114

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
           L  QE  KS I      +     Q+ +     AE   +    +       +++   + + 
Sbjct: 115 LLYQEASKSKIPDLDKMIEQKVSQNRQKFKTEAELVEALSALEMTLP-DLEEFTRKEIVL 173

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKM-KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
              +   F  K    + E+             +   ++     +  ++       +K  +
Sbjct: 174 STYIAEHFQTKASVSDEEVKKFYDDNLNTYFKKPESVKASHILVGTDEKATPEDRKKAKE 233

Query: 204 DAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN 259
            AE    R     +     +  ++       G        ++ PQF+    K      + 
Sbjct: 234 KAEALLKRLQAGEEFAALAKDESTCPSATQGGNLGEFGREEMVPQFEEAAFKLKPGEMSG 293

Query: 260 PYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
              T+ G   I +  K++   E   ++K  +       K ++  + ++ KL+  A I 
Sbjct: 294 VVETKFGYHIIKVTGKQEAAAEKLESVKETIVEFLKKQKAQQELSSFIDKLKKEAKIE 351


>gi|307728470|ref|YP_003905694.1| SurA domain-containing protein [Burkholderia sp. CCGE1003]
 gi|307583005|gb|ADN56403.1| SurA domain protein [Burkholderia sp. CCGE1003]
          Length = 468

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/314 (13%), Positives = 100/314 (31%), Gaps = 22/314 (7%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE-------- 71
           FV +       ++         I   +N  VIT  ++ +R+ L+  +             
Sbjct: 37  FVSVAPVQAQALAGNRGQTVDTIAAVVNNGVITRRELDERVGLIARRLNQQNAPVPPADQ 96

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           L +  + ++++E ++ Q+ ++ GI  D   V     + A+   +S + + + ++ QG+  
Sbjct: 97  LRQQVLNQMVLERIQLQKAKEVGINIDDAAVQKTLERLAQANNMSLDTYRARIEAQGVPW 156

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN----KQKMKNITVREYLIRTVLFSI 187
             F      +     + + +   K    + E+       +      T   ++    L + 
Sbjct: 157 ATFTSDARTELTLSRLREKEVDSKVTVSDAEVANYIASQRGPNAGATSDLHMQHIFLKAP 216

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
            +    +    QK+ +                +  +        G   Y   S L P+F 
Sbjct: 217 LNAPQTDIEAAQKKAEALLAEAKGGANFEKLAKSNSQAPDAGKGGDMGYASPSKLPPEFV 276

Query: 248 NLLKKSQNNTTNP--YVTQKGVEYIAICDKRD--------LGGEIALKAYLSAQNTPTKI 297
                 +    NP    T  G E + + D+R                  ++  +      
Sbjct: 277 KAASSLRPGQVNPEVIRTNDGFEIVRLVDRRTGQGTSSDAPKLMQTHVRHILLRVGDGMS 336

Query: 298 EKHEAEYVKKLRSN 311
           E    + + +++  
Sbjct: 337 EPQARQKLLEIKRE 350



 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 16/145 (11%), Positives = 50/145 (34%), Gaps = 2/145 (1%)

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
              +          +      ++   ++++ + +               ++        G
Sbjct: 315 DAPKLMQTHVRHILLRVGDGMSEPQARQKLLEIKREIAAGGDFAKFAHTYSQDGSSSQGG 374

Query: 233 KAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK-AYLSA 290
              ++   +  P+F+  +        ++P  ++ G   I + ++R+  G IA +      
Sbjct: 375 DLGWISPGETVPEFERAMNTLQDGQISDPVRSEYGYHLIQVLERREAQGSIAQQMDLARQ 434

Query: 291 QNTPTKIEKHEAEYVKKLRSNAIIH 315
                K E+  A+++++LR  A + 
Sbjct: 435 AIGQRKAEQAYADWLRELRDTAYVE 459


>gi|187922682|ref|YP_001894324.1| SurA domain [Burkholderia phytofirmans PsJN]
 gi|187713876|gb|ACD15100.1| SurA domain [Burkholderia phytofirmans PsJN]
          Length = 453

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/314 (12%), Positives = 99/314 (31%), Gaps = 22/314 (7%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE-------- 71
           F+ +       +   S      I   +N  VIT  ++ +R++L+  +             
Sbjct: 22  FLSVAPVQAQALGGSSGQTVDTIAAVVNNGVITRRELDERMSLITRRLNQQNAPVPPLDQ 81

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           L +  + ++++E ++ Q+ ++  I  D  TV     + A    LS + + S ++ QG+  
Sbjct: 82  LRQQVLNQMVLERIQLQKAKEDNINIDDATVQKTLERLAAANNLSLDVYRSRIEAQGVPW 141

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI---- 187
           + F      +     + + +   K    + E+       +           +        
Sbjct: 142 STFTSDARTELTLSRLREKEVDSKVTVSDAEVANYIASQRGPNAGATSDLHLQHIFLKAP 201

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
            +    +    Q++ +                +  +        G   ++  S L P+  
Sbjct: 202 LNAPETDIEAAQQKAQALLAEAKGGANFDKLAKSNSQAPDASKGGDTGFVAPSKLPPEVV 261

Query: 248 NLLKKSQNNTTNP--YVTQKGVEYIAICDKRDLGGE--------IALKAYLSAQNTPTKI 297
             +   +    NP    T  G E + + D+R   G              ++  +      
Sbjct: 262 KAVSTMRPGEVNPDLIRTNDGFEIVRLVDRRAGQGTSSDAPKLVQTHVRHILLRVGDGMS 321

Query: 298 EKHEAEYVKKLRSN 311
           E    + + +++  
Sbjct: 322 EPQARQKLLEIKKE 335



 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 14/145 (9%), Positives = 50/145 (34%), Gaps = 2/145 (1%)

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
              +          +      ++   ++++ + ++              ++        G
Sbjct: 300 DAPKLVQTHVRHILLRVGDGMSEPQARQKLLEIKKEIAAGGDFAKFAHTYSQDGSSSQGG 359

Query: 233 KAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK-AYLSA 290
              ++   +  P+F+  +        ++P  ++ G   I +  +R+  G ++ +      
Sbjct: 360 DLGWISPGETVPEFERAMNNLQDGQISDPVRSEYGYHLIQVLGRRESEGSVSQQMDLARQ 419

Query: 291 QNTPTKIEKHEAEYVKKLRSNAIIH 315
                K E+  A+++++LR  A + 
Sbjct: 420 AIGQRKAEQAYADWLRELRDTAYVE 444


>gi|157368971|ref|YP_001476960.1| peptidyl-prolyl cis-trans isomerase SurA [Serratia proteamaculans
           568]
 gi|157320735|gb|ABV39832.1| SurA domain [Serratia proteamaculans 568]
          Length = 432

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/309 (11%), Positives = 105/309 (33%), Gaps = 16/309 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   +    ++ +     ++   ++  V+ + D+S  +  +KL              L
Sbjct: 7   LILGLVVCANTAFAAPQEVDKVAAVVDNGVVLESDVSTLLQSVKLNAQQAGQQLPDDKTL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ ++ Q  +K GI      ++      A    +S +   S L  +G+  N
Sbjct: 67  RHQILERLIMDNIQLQMAKKMGINVSDADLDKAIGNIAAQNKMSIDQMRSRLAYEGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + +  +V  N+   +   L  E+ +   ++      +  +      IP  + 
Sbjct: 127 TYRSQIRKEMLISEVRNNEVRRRVTILPQEVDSLAAQVGAQNGSDTEMNISHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            +Q  V      A++                 +++    +  G   +    ++   F + 
Sbjct: 187 PSQAQVDDAEALAKKLMGEINGGADFGKLAISYSADSQALKGGNMGWGKLQEIPTLFAER 246

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
           L+   + +   P  +  G   + + D R     +        ++  + +    +      
Sbjct: 247 LVNAKKGDVVGPIRSGVGFHILKVNDIRGANQSVSVTEVHARHILLKPSVVLTDDQARAK 306

Query: 305 VKKLRSNAI 313
           ++++     
Sbjct: 307 LQEVAEAIK 315



 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 87/285 (30%), Gaps = 17/285 (5%)

Query: 47  NGEV-----ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           N EV     I   ++    A +  Q  +     I+   LI       + +       +  
Sbjct: 143 NNEVRRRVTILPQEVDSLAAQVGAQNGSDTEMNIS-HILIPLPENPSQAQVDDAEALAKK 201

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-------FML 154
           +       A    L+    +     +G      K           +V             
Sbjct: 202 LMGEINGGADFGKLAISYSADSQALKGGNMGWGKLQEIPTLFAERLVNAKKGDVVGPIRS 261

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
             G   +++   +   ++++V E   R +L         +Q    K  + AE  +    K
Sbjct: 262 GVGFHILKVNDIRGANQSVSVTEVHARHILLKPSVVLTDDQA-RAKLQEVAEAIKSGRAK 320

Query: 215 DCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAI 272
             ++ ++ +      +  G   +       P F++  +K S+   + P  +  G   I +
Sbjct: 321 FADEAKQLSQDPGSALQGGDLGWASPDIYDPAFRDALMKLSKGEVSQPVHSSFGWHLIQL 380

Query: 273 CDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            D R +   + A K          K  +    ++++ R+ A +  
Sbjct: 381 LDTRQVDKTDAAQKDRAYRMLFNRKFAEEAQTWMQEQRAQAYVKI 425


>gi|298291093|ref|YP_003693032.1| SurA domain protein [Starkeya novella DSM 506]
 gi|296927604|gb|ADH88413.1| SurA domain protein [Starkeya novella DSM 506]
          Length = 326

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/301 (19%), Positives = 117/301 (38%), Gaps = 5/301 (1%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQE 79
            V  +     + ++   A +  I   + G+ IT  D+++RI L +L +     +K A+++
Sbjct: 26  LVAGMVAACALAAFPGAASAQGILVMVQGQPITSFDVAQRIKLAQLTERLSLSQKQALED 85

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           LI E LK    E+ G+T D + +   F + A  +G + +  +  L + G+     K  + 
Sbjct: 86  LIDERLKIITAERGGVTADKDEIEKMFARMANRSGRTPDQLTQALTQSGLDARMLKTKMR 145

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN---ITVREYLIRTVLFSIPDNKLQNQG 196
              +W   V+  +       + ++ A  Q          R          +   +  N  
Sbjct: 146 ADYVWNSYVRGRYSSAATVRDSDVFAALQTKGEDLTKAQRTTEYTIRQVVLVVGRTANPA 205

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-N 255
              +R+ +A   R                + +  +        +D+    + ++  +   
Sbjct: 206 QRSQRMAEANSLRKSFTSCDG-GVATVRGMREAVVRDPVIRTSADMSEGVRKVMDSTPVG 264

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             T P VT+ G+E +AIC +R++ GE A K  + A     + E      + + R  A+I 
Sbjct: 265 QLTPPEVTRAGIEMVAICARREVVGESAQKREVRADLETKQFEAVSKRLLAEARKGAMIQ 324

Query: 316 Y 316
           Y
Sbjct: 325 Y 325


>gi|116750899|ref|YP_847586.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699963|gb|ABK19151.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 326

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/323 (14%), Positives = 109/323 (33%), Gaps = 21/323 (6%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI------ 68
            +    +L++FC++      +     RI   +NGE+I   ++ +R+ L++          
Sbjct: 2   RMAGCVLLVLFCVIAASGRCAADSLDRIVAVVNGEIILYSELQERLQLVQKSLPETRTND 61

Query: 69  ---NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
                 +E+  +Q++  E L +QE ++  IT     V+        +  +S     + L 
Sbjct: 62  PARKAAIERELLQQMTREKLTEQEAKRLKITVTKKDVDEAIAFVMADHNVSQAQMEARLK 121

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN----ITVREYLIR 181
           + G     F++ L        +++     K    E +I A   +           +   R
Sbjct: 122 ESGQSMEEFRKVLTKDLERDRLLERVLKSKILISEKQIDAFLSQSPPEVRVEPRGKEEYR 181

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             +  +P +        +KR ++  E             +++        G   ++   +
Sbjct: 182 LGIIFLPASDGAEGKQAEKRAREIREKLKAGEDFAAMARQYSKGPAAQDGGDVGFVSLDE 241

Query: 242 LHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR-------DLGGEIALKAYLSAQNT 293
           L P   +N+     N  ++      G     + D R              ++     Q  
Sbjct: 242 LAPFIAKNVKDLKINQPSDVVKGGDGYYIFLVTDVRRAEMQAAQNSPATNMRERARRQLY 301

Query: 294 PTKIEKHEAEYVKKLRSNAIIHY 316
             ++ +   E++K L S + +  
Sbjct: 302 QQEMARRFDEWIKDLESRSFVKI 324


>gi|145630363|ref|ZP_01786144.1| stationary-phase survival protein SurA [Haemophilus influenzae
           R3021]
 gi|144984098|gb|EDJ91535.1| stationary-phase survival protein SurA [Haemophilus influenzae
           R3021]
          Length = 311

 Score =  127 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/316 (17%), Positives = 113/316 (35%), Gaps = 20/316 (6%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAM-SSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           +        +   +  V++ S A    R+  T++G  + +  +       +         
Sbjct: 1   MKKFVLRSFLLATLGCVAFTSMAQAEERVVATVDGIPVLESQV-------RANMGKKGDR 53

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           + A+ ++I + L ++ +++SG+  D   +++     A   GL+   F   LD QGI  N 
Sbjct: 54  QSAIDKIIDDILVQKAVQESGVKIDPREIDHIVEDTAARNGLTYGQFLDALDYQGISLNT 113

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEI----------PANKQKMKNITVREYLIRTV 183
           F+Q +A Q +   V              E+             K   + +  +EY +R +
Sbjct: 114 FRQQIANQMVMGAVRNKAIQESIDVTREEVVALGQKMLEEAKEKGTAQKVMGKEYEVRHI 173

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY-LLESDL 242
           L  +       Q   Q     ++    +       L+     +   + G   Y   E+  
Sbjct: 174 LLKLNPLLNDAQAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPETYA 233

Query: 243 HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKHE 301
               Q ++K  Q   + P+ T+ G   + +   RD              +   T+++   
Sbjct: 234 PQFAQTVMKSKQGVISAPFKTEFGWHILEVTGVRDGDLTAEAYTQKAYERLVNTQLQDAT 293

Query: 302 AEYVKKLRSNAIIHYY 317
            ++VK LR  A I Y+
Sbjct: 294 NDWVKALRKRANIQYF 309


>gi|114319362|ref|YP_741045.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|122070615|sp|Q0AC82|SURA_ALHEH RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|114225756|gb|ABI55555.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 433

 Score =  127 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 36/272 (13%), Positives = 92/272 (33%), Gaps = 11/272 (4%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGELEKIAVQELIVETL 85
                  RI   ++ +V+   ++ + +A +  Q              ++  ++ LI + +
Sbjct: 26  ARAETLDRIVAVVDDQVVLASELERELATIANQLRSRGQRLPPRDVFQRQVLERLITQRV 85

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
           +    ++ GIT D  T++    + AR   ++   F   ++++G   N+F++ +  +    
Sbjct: 86  QLSRAQRVGITVDDATLDAAMQRMARQNNMTLGQFRQAVEQEGFEYNYFREGIREEIAIS 145

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
            + +     +      E+    + + +      L   ++ +            ++RI+  
Sbjct: 146 RLRQAQVEEQVTVTPQEVEEVLETLDDENQEYRLGHILVATPEAASTAQLEEARERIEQL 205

Query: 206 EESRLRLPKDCN-KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK--SQNNTTNPYV 262
            E  +    D       F+     +  G   + L S L   F   + +       +    
Sbjct: 206 REQIIAGETDFEGAATAFSDAASAMEGGDLGWRLHSQLPSLFAEAIDEGLQAGEVSGVLQ 265

Query: 263 TQKGVEYIAICDKRDLGGEIALKAYLSAQNTP 294
              G   + + D+R  GGE   +         
Sbjct: 266 NSSGFHLVKLMDQRTQGGERVTETRARHILIR 297



 Score = 96.7 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 53/155 (34%), Gaps = 3/155 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +    Q+ +            +    D  +      + R++   E            E +
Sbjct: 273 VKLMDQRTQGGERVTETRARHILIRTDGDVITDEDARLRLRSLLERIEAGESFAELAEAY 332

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           +         G   +     L P+FQ  +    +   + P+ +  G   + + D+R+   
Sbjct: 333 SEDPGSAARGGDLGWTQPGQLVPEFQGAMDALEEGQISAPFASPFGWHIVQVTDRRERDV 392

Query: 281 E-IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
               L+  L+ Q    K+E+   +++++LR  A +
Sbjct: 393 SRERLRDQLAQQIHQRKVEEAFEQWIRRLRDEAYV 427


>gi|330448801|ref|ZP_08312448.1| peptidyl-prolyl cis-trans isomerase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328492992|dbj|GAA06945.1| peptidyl-prolyl cis-trans isomerase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 433

 Score =  127 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 40/314 (12%), Positives = 116/314 (36%), Gaps = 15/314 (4%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL--------K 64
           +K      + ++   +   S  +     ++  T+N  VI   D++  +  +        +
Sbjct: 1   MKKWKYSVLSLMMMGMSATSMAAPQELDQVVMTVNDGVILQSDVNAMLKTVHLNAAEEHQ 60

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
               N  L +  + +LI+E L+ Q+ ++ GI  D + ++      A+  G++ +     L
Sbjct: 61  QLPPNDILRQQVMDKLIMENLQIQQAKQLGIRIDDSQLDQAIADVAKQRGITVDQLRQTL 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            K GI    F++ +    +  +        +   L  E+ A  ++M   T +        
Sbjct: 121 AKAGISYPMFREQMRNDMLASEARTVIVRKRVNILPQEVDALAKQMAKQTQQNVQYNISQ 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             I  ++   +    K  ++AE+      +         +++     +  G+  ++ + +
Sbjct: 181 IQIRVDEDAEKAARDKAKQEAEDIVAQLKKGADFSQLAYRYSKGPKALKGGEWGWMSKEE 240

Query: 242 LHPQFQNLLKKSQNN-TTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKI 297
           +   F + ++ +  +    P+ +  G   + I D +    +        ++  + +    
Sbjct: 241 MPTIFADQIQNNGKDAIIGPFRSGVGYHILKINDVKGMPSVSVVEVKARHILIKPSVILS 300

Query: 298 EKHEAEYVKKLRSN 311
           +    + ++++R  
Sbjct: 301 DAAAKKELEQIRQR 314



 Score = 84.0 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/286 (9%), Positives = 84/286 (29%), Gaps = 7/286 (2%)

Query: 37  AMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL-IVETLKKQEIEKSGI 95
           A  +R         I   ++      +  Q        I+  ++ + E  +K   +K+  
Sbjct: 140 ASEARTVIVRKRVNILPQEVDALAKQMAKQTQQNVQYNISQIQIRVDEDAEKAARDKAKQ 199

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLD--KQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
             +                         L   + G         +    I  +       
Sbjct: 200 EAEDIVAQLKKGADFSQLAYRYSKGPKALKGGEWGWMSKEEMPTIFADQIQNNGKDAIIG 259

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                +   I          +V    ++     I  + + +    +K ++   +  +   
Sbjct: 260 PFRSGVGYHILKINDVKGMPSVSVVEVKARHILIKPSVILSDAAAKKELEQIRQRIISGK 319

Query: 214 K-DCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYI 270
           +      + ++       + G+  + +     P F++ ++    +  + P+ +  G   +
Sbjct: 320 QSFAAAAKAYSQDPGSAANGGELGWQVPDMYAPAFKDKVETLPVDKISEPFKSAFGWHIV 379

Query: 271 AICDKRDLG-GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            +  +R +   + A+K   +      K  +    ++++LR+ A I 
Sbjct: 380 EVEGRRKVDRTDAAMKNRAAQILFNRKFNEEAQTWLQELRAGAYIE 425


>gi|148825262|ref|YP_001290015.1| stationary-phase survival protein SurA [Haemophilus influenzae
           PittEE]
 gi|148715422|gb|ABQ97632.1| stationary-phase survival protein SurA [Haemophilus influenzae
           PittEE]
          Length = 311

 Score =  127 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/316 (17%), Positives = 113/316 (35%), Gaps = 20/316 (6%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAM-SSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           +        +   +  V++ S A    R+  T++G  + +  +       +         
Sbjct: 1   MKKFILKSFLLATLGCVAFTSMAQAEERVVATVDGIPVLESQV-------RANMGKKGDR 53

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           + A+ ++I + L ++ +++SG+  D   +++     A   GL+   F   LD QGI  N 
Sbjct: 54  QSAIDKIIDDILVQKAVQESGVKIDPREIDHIVEDTAARNGLTYGQFLDALDYQGISLNA 113

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEI----------PANKQKMKNITVREYLIRTV 183
           F+Q +A Q +   V              E+             K   + +  +EY +R +
Sbjct: 114 FRQQIANQMVMGAVRNKAIQESIDVTREEVVALGQKMLEEAKEKGTAQKVMGKEYEVRHI 173

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY-LLESDL 242
           L  +       Q   Q     ++    +       L+     +   + G   Y   E+  
Sbjct: 174 LLKLNPLLNDAQAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPETYA 233

Query: 243 HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKHE 301
               Q ++K  Q   + P+ T+ G   + +   RD              +   T+++   
Sbjct: 234 PQFAQTVVKSKQGVISAPFKTEFGWHILEVTGVRDGDLTAEAYTQKAYERLVNTQLQDAT 293

Query: 302 AEYVKKLRSNAIIHYY 317
            ++VK LR  A I Y+
Sbjct: 294 NDWVKALRKRANIQYF 309


>gi|83648743|ref|YP_437178.1| parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC
           2396]
 gi|122070647|sp|Q2S9C1|SURA_HAHCH RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|83636786|gb|ABC32753.1| Parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC
           2396]
          Length = 434

 Score =  127 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 105/290 (36%), Gaps = 15/290 (5%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------LEKIAVQELIVETL 85
                  R+   +N +++   ++  R + +K +    +        L +  + +L++E++
Sbjct: 29  AQVQELDRVVAVVNDDIVLYSELQDRASRIKDKLRQQKTPLPPEAVLHEKVLDQLVLESI 88

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
           + Q  ++ GI    + +N      A+  G++ + F   L ++G+     ++ +  + I  
Sbjct: 89  QMQMADRGGIRVSDSQLNQTMQNIAKQNGMTLDQFQQALSEEGVTYQSAREQIRREMIIS 148

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
            V +     +    E E+    +       R          I   +  +    ++     
Sbjct: 149 RVQQRSVDSRVRVTEKEVNDFLKSASAKEQRAEEYHLAHILIALPENPSDAQRKEAESKV 208

Query: 206 EESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPY 261
           E+ R +L +  +       ++        G   +     +   F ++  K +   T+ P 
Sbjct: 209 EKIRSQLDQGVDFKQLAITYSDASTATQGGDLGWRKPDQVPSLFADVAPKLAPGQTSEPI 268

Query: 262 VTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT---KIEKHEAEYVKKL 308
               GV ++A+ +KR    ++  ++ +          + E    + ++++
Sbjct: 269 RNSSGVHFVAMLEKRGGVSKVVEQSKVRHILVQQNELRDEIAAKKLIEEI 318



 Score = 87.8 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 56/145 (38%), Gaps = 3/145 (2%)

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIG 232
           +      +     +  N+L+++   +K I++               + ++       + G
Sbjct: 287 SKVVEQSKVRHILVQQNELRDEIAAKKLIEEIYGKVQAGEDFAELAKAYSDDAVSAAAGG 346

Query: 233 KAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKAYLSA 290
              ++   D+ P+F  +++++     + P+ +  G   + + D+R+   G+  + +    
Sbjct: 347 SLDWVNPGDMVPEFDQMMRETPVGAVSKPFQSTFGWHILQVQDRREADIGDRLMASQARQ 406

Query: 291 QNTPTKIEKHEAEYVKKLRSNAIIH 315
                K E+    ++ ++R  A + 
Sbjct: 407 VLHRRKYEEELQNWLSEIRDEAFVQ 431


>gi|255066985|ref|ZP_05318840.1| SurA/PPIASE domain protein [Neisseria sicca ATCC 29256]
 gi|255048810|gb|EET44274.1| SurA/PPIASE domain protein [Neisseria sicca ATCC 29256]
          Length = 331

 Score =  127 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 86/286 (30%), Gaps = 17/286 (5%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKL------QKINGELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT   ++  IA  +       Q    EL +  + +L+ ++L  Q  ++
Sbjct: 54  SDGIAAIADNEVITQRQLAHAIAEARQHLPKGTQISEDELRQQVLAQLVNQSLIIQAGKR 113

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    Q       SA+      D          + +  Q++      +  
Sbjct: 114 RNIQATDAEIDAVIAQTPSLKNPSAQTRREIADT------IIMEKVRQQAVMQ---NSRV 164

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
                N  +E    +                   I  +        +  I+         
Sbjct: 165 SDAEVNSFIERARQQGVALPEGEPMRQYSAQHILIKADNDNAAAGAESTIRKIYAQARSG 224

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                   +++      S G   +  +  +   F+  + K      + P  TQ G   I 
Sbjct: 225 ADFAGLARQYSQDGSANSGGDLGWFADGMMVAPFEEAVHKLKPGQISPPVRTQFGWHIIK 284

Query: 272 ICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           + D RD    E   +  +    +  K ++  A  ++ L S A ++ 
Sbjct: 285 LNDVRDAGTPEERQRNAVRQYMSGQKAQQATANLLRDLHSGAYVNI 330


>gi|209519024|ref|ZP_03267832.1| SurA domain protein [Burkholderia sp. H160]
 gi|209500536|gb|EEA00584.1| SurA domain protein [Burkholderia sp. H160]
          Length = 478

 Score =  127 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 43/341 (12%), Positives = 108/341 (31%), Gaps = 38/341 (11%)

Query: 9   LSDFIKLLTTYFVLIIFC-------IVPIVSYKSWA--------MSSRIRTTINGEVITD 53
           +  F+ ++    +  +          +P+ S ++ A            I   +N  VIT 
Sbjct: 20  IGVFVAIMKQLRLATLAAGLVAAASFLPVASVQAQALGGNGGGQTVDTIAAVVNNGVITQ 79

Query: 54  GDISKRIALLKLQKINGE--------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
            ++ +R  L+  +             L +  + ++++E ++ Q+ ++ GIT D   V   
Sbjct: 80  RELDERAGLIAHRLNQQNAPVPPMDQLRQQVLTQMVLERIQLQKAKEDGITIDDTAVERT 139

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
             + A+   ++   + + ++ QG+    F      +     + + +   K    + E+  
Sbjct: 140 LERLAQANNMTLAMYRARIEAQGVPWTTFTNDARTELTLSRLREKEVDSKITVTDAEVAN 199

Query: 166 NKQKMKNITVREYLIRTVLFSIP----DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
                +     +     +         +    +    QK+ +                + 
Sbjct: 200 YIASQRGPGAGQTNDLHMQHIFVKAPLNAPETDIEAAQKKAEGLLAEAKGGADFEKLAKN 259

Query: 222 FASKIHD-VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP--YVTQKGVEYIAICDKRDL 278
            +       + G   +L  S L P+F       +    NP    T  G E + + ++R  
Sbjct: 260 NSQAPDASKNGGDLGFLAPSKLPPEFVKAASGLRPGEINPDLIRTNDGFEIVRLVERRAG 319

Query: 279 GGE--------IALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            G              ++  +      E    + +  +RS 
Sbjct: 320 QGNSSDAPKLVQTHVRHILLRVGDGLSEPQARQKLLDIRSQ 360



 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 52/155 (33%), Gaps = 2/155 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                Q   +   +          +      ++   ++++ D         +       +
Sbjct: 315 ERRAGQGNSSDAPKLVQTHVRHILLRVGDGLSEPQARQKLLDIRSQIAAGGEFEKFARTY 374

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           +        G   ++   +  P+F+  +     N  ++P  ++ G   I +  +RD  G 
Sbjct: 375 SQDGSSSQGGDLGWISPGETVPEFERAMNSLQDNQISDPVRSEYGYHLIQVLGRRDAEGS 434

Query: 282 IALK-AYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           IA +           K E+  A+++++LR  A + 
Sbjct: 435 IAQQMDLARQAIGQRKAEQAYADWLRELRDTAYVE 469


>gi|145632724|ref|ZP_01788458.1| thymidylate kinase [Haemophilus influenzae 3655]
 gi|145634545|ref|ZP_01790254.1| stationary-phase survival protein SurA [Haemophilus influenzae
           PittAA]
 gi|229844382|ref|ZP_04464522.1| stationary-phase survival protein SurA [Haemophilus influenzae
           6P18H1]
 gi|144986919|gb|EDJ93471.1| thymidylate kinase [Haemophilus influenzae 3655]
 gi|145268090|gb|EDK08085.1| stationary-phase survival protein SurA [Haemophilus influenzae
           PittAA]
 gi|229812631|gb|EEP48320.1| stationary-phase survival protein SurA [Haemophilus influenzae
           6P18H1]
          Length = 311

 Score =  127 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/316 (17%), Positives = 113/316 (35%), Gaps = 20/316 (6%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAM-SSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           +        +   +  V++ S A    R+  T++G  + +  +       +         
Sbjct: 1   MKKFILKSFLLATLGCVAFASMAQAEERVVATVDGIPVLESQV-------RANMGKKGDR 53

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           + A+ ++I + L ++ +++SG+  D   +++     A   GL+   F   LD QGI  N 
Sbjct: 54  QSAIDKIIDDILVQKAVQESGVKIDPREIDHIVEDTAARNGLTYGQFLDALDYQGISLNA 113

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEI----------PANKQKMKNITVREYLIRTV 183
           F+Q +A Q +   V              E+             K   + +  +EY +R +
Sbjct: 114 FRQQIANQMVMGAVRNKAIQESIDVTREEVVALGQKMLEEAKEKGTAQKVMGKEYEVRHI 173

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY-LLESDL 242
           L  +       Q   Q     ++    +       L+     +   + G   Y   E+  
Sbjct: 174 LLKLNPLLNDAQAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPETYA 233

Query: 243 HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKHE 301
               Q ++K  Q   + P+ T+ G   + +   RD              +   T+++   
Sbjct: 234 PQFAQTVVKSKQGVISAPFKTEFGWHILEVTGVRDGDLTAEAYTQKAYERLVNTQLQDAT 293

Query: 302 AEYVKKLRSNAIIHYY 317
            ++VK LR  A I Y+
Sbjct: 294 NDWVKALRKRANIQYF 309


>gi|261867180|ref|YP_003255102.1| SurA [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412512|gb|ACX81883.1| SurA [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 310

 Score =  127 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 41/314 (13%), Positives = 99/314 (31%), Gaps = 19/314 (6%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWA-MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +      ++F  +      +      ++  T+NG  I +  +   I             +
Sbjct: 1   MKMNLKSVLFAAIGFFVLAAHVHAEEKVVATVNGIPILESQVQSAI------NKKTNDRQ 54

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
            A+ ++I + L  Q +++S +  ++  ++      A   GL+       LD QGI    +
Sbjct: 55  AALNKVIDDILVDQAVKESDVKVNNAQIDQIIEGIAAQNGLTFGQLLDALDYQGISYRAY 114

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA---------NKQKMKNITVREYLIRTVLF 185
           +Q +A Q +  +V  +           ++             +               + 
Sbjct: 115 RQQIAQQVMMSEVRNHAISQSVDVSREQVEVLAKKMLDEAKAKGSVAQISDTQYEVRHIL 174

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQY-LLESDLH 243
              +  L +     +  +   +  +      +   K++       + G   Y   E  + 
Sbjct: 175 LKLNPLLNDAQAKAQLEQIRADIIVGKTTFADAALKYSKDYLSGANGGSLGYAFPEMYVG 234

Query: 244 PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKHEA 302
           P  Q +        + P+ T+ G   + + + R               Q    +++    
Sbjct: 235 PFNQAVRTTKPGVISAPFKTEFGWHILEVTNTRQADRTEDAYRQKAYEQIVNQQLQDSAL 294

Query: 303 EYVKKLRSNAIIHY 316
           ++V+ LR  A I Y
Sbjct: 295 DWVQALRKRADIKY 308


>gi|88859123|ref|ZP_01133764.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Pseudoalteromonas
           tunicata D2]
 gi|88819349|gb|EAR29163.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Pseudoalteromonas
           tunicata D2]
          Length = 430

 Score =  127 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/317 (13%), Positives = 106/317 (33%), Gaps = 19/317 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK----- 67
           +KL T  F ++    + + +        ++  T+N  V+   +I   I  +K +      
Sbjct: 1   MKLKTLVFTVLCTLGLNLPAVAKEVQIDKVVATVNEGVVLQSEIDTIINRVKSRALTDGQ 60

Query: 68  ---INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
               +  L   A++ LI + L  Q  E+ G+      ++   +  A+  G +  D    +
Sbjct: 61  SLPTDDALRLQAIERLINQELLMQMSERMGLQISDAQLDQTLMMMAKEQGGTLADLRKTI 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI---R 181
           +  G     +++ + ++     V++++   +      EI      ++             
Sbjct: 121 ESSGESYQAYREEMRVEMTTQQVLRSNVERRIYISLQEIENLLTILEQQGQTNEEYDIGH 180

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
            ++    D   Q     + R +   +      +        +     +  G+  ++  ++
Sbjct: 181 ILIDLPADGNAQEIEDAKVRAEKVIKLLNEGSEFKRIAIASSGGSKALEGGQLGWMSINE 240

Query: 242 LHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK---AYLSAQ----NT 293
           +   F + +  K       P  +  G   I + D R       ++    ++  Q     +
Sbjct: 241 MPTLFAEAVKGKKAGEIVGPLRSGAGFHIIKVQDIRGRQVVETVEVRSRHILIQPSIILS 300

Query: 294 PTKIEKHEAEYVKKLRS 310
             K     A +VK L+ 
Sbjct: 301 EEKARSMLAGFVKDLKE 317



 Score = 75.5 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/274 (12%), Positives = 77/274 (28%), Gaps = 9/274 (3%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I+  +I   + +L+ Q    E E      LI         E       +  V     + +
Sbjct: 154 ISLQEIENLLTILEQQGQTNE-EYDIGHILIDLPADGNAQEIEDAKVRAEKVIKLLNEGS 212

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM-----EIPA 165
               ++          +G                  V         G L        I  
Sbjct: 213 EFKRIAIASSGGSKALEGGQLGWMSINEMPTLFAEAVKGKKAGEIVGPLRSGAGFHIIKV 272

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
              + + +     +    +   P   L  +          ++ +          ++++  
Sbjct: 273 QDIRGRQVVETVEVRSRHILIQPSIILSEEKARSMLAGFVKDLKEGKADFATLAKEYSED 332

Query: 226 I-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL-GGEI 282
               +  G+  +   S   P F++ L    ++  + P+ +  G   + + DKR     E+
Sbjct: 333 QGSALKGGEYDWTDPSTYVPAFRDTLLSLEKDQLSEPFRSNYGWHIVQLLDKRIADKTEL 392

Query: 283 ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           A +          K ++    + +++R  A I  
Sbjct: 393 AKRNRAQQMLFNRKFKEESFAWQREMREQAHIEI 426


>gi|319898023|ref|YP_004136220.1| survival protein sura homolog [Haemophilus influenzae F3031]
 gi|317433529|emb|CBY81912.1| survival protein SurA homolog [Haemophilus influenzae F3031]
          Length = 311

 Score =  127 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/316 (17%), Positives = 113/316 (35%), Gaps = 20/316 (6%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAM-SSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           +        +   +  V++ S A    R+  T++G  + +  +       +         
Sbjct: 1   MKKFILKSFLLATLGCVAFASMAQAEERVVATVDGIPVLESQV-------RANMGKKGDR 53

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           + A+ ++I + L ++ +++SG+  D   +++     A   GL+   F   LD QGI  N 
Sbjct: 54  QSAIDKIIDDILVQKAVQESGVKIDPREIDHIVEDTAARNGLTYGQFLDALDYQGISLNA 113

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEI----------PANKQKMKNITVREYLIRTV 183
           F+Q +A Q +   V              E+             K   + +  +EY +R +
Sbjct: 114 FRQQIANQMVMGAVRNKAIQESIDVTREEVVALGQKMLEEAKEKGTAQKVMGKEYEVRHI 173

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY-LLESDL 242
           L  +       Q   Q     ++    +       L+     +   + G   Y   E+  
Sbjct: 174 LLKLNPLLNDAQAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPETYA 233

Query: 243 HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKHE 301
               Q ++K  Q   + P+ T+ G   + +   RD              +   T+++   
Sbjct: 234 PQFAQTVMKSKQGVISAPFKTEFGWHILEVTGVRDGDLTAEAYTQKAYERLVNTQLQDAT 293

Query: 302 AEYVKKLRSNAIIHYY 317
            ++VK LR  A I Y+
Sbjct: 294 KDWVKALRKRANIQYF 309


>gi|313669248|ref|YP_004049532.1| peptidyl-prolyl cis-trans isomerase [Neisseria lactamica ST-640]
 gi|313006710|emb|CBN88180.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria lactamica
           020-06]
          Length = 359

 Score =  127 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 78/286 (27%), Gaps = 17/286 (5%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT   +++ +A  K     G       L +  + +L+ ++L  Q  ++
Sbjct: 82  SDGIAAVADNEVITRRRLAQAVADAKANLPKGVQISDTALTEQVLMQLVNQSLIVQAGKR 141

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
                +                       +   +        K           V + + 
Sbjct: 142 R----NIQATEAEIDAVVAQNPALKNLSPAQRRELADNIIAEKVREQAVMQNSRVSEAEV 197

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
                    E    +             R     I  +        +  I+   +     
Sbjct: 198 DRFI-----EQAQKQGITLPEGEPLRQYRAQHILIKADGENAAVGAESTIRKIYDQARNG 252

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                   +++      + G   +  +  +   F+  +        + P  TQ G   I 
Sbjct: 253 TDFSGLARQYSQDAGAGNGGDLGWFSDGVMVAPFEAAVHALKPGQVSAPVRTQFGWHIIK 312

Query: 272 ICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           + + RD    E  ++  +       K E+  AE ++ L S A I  
Sbjct: 313 LNEVRDAGTPEERIRNSVRQYIFQQKAEQATAELLRDLHSGAYIDI 358


>gi|328952685|ref|YP_004370019.1| SurA domain protein [Desulfobacca acetoxidans DSM 11109]
 gi|328453009|gb|AEB08838.1| SurA domain protein [Desulfobacca acetoxidans DSM 11109]
          Length = 316

 Score =  127 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 53/313 (16%), Positives = 109/313 (34%), Gaps = 11/313 (3%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ-------K 67
            L    +      +      +  +   I   +N EVIT  ++ + +  ++         K
Sbjct: 2   RLIASLLFCACLAILPDGMAAAKIVDEIVAQVNDEVITLSELEQAMKYIQANPAAGAKVK 61

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF-SSFLDK 126
            N    + A++ LI   L K+E ++ GIT     +        +  G + ++  S  L K
Sbjct: 62  NNQAFRRQALEMLIDRKLAKEEAKRYGITVPEKEIKKTVDDIKQKYGFTDDETLSKALAK 121

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV-LF 185
            G+     +Q L  Q     ++ +    K    + EI    ++          I+ + L 
Sbjct: 122 DGMTMEQLRQQLIEQIQQDRLMLSTVRSKVKVSDAEIQQFYEQRYRQADNRVHIKIINLP 181

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ 245
               +  + Q  V+   +       R       +E ++    +V  G   Y+ +SD+ P+
Sbjct: 182 VAAGSSAEEQEEVRALAERILIQARRGESFDKLMETYSKSTPNVPGGDLGYIRQSDIDPR 241

Query: 246 FQNLLKKSQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAE 303
           F   L   +     P     G + I + D +          +  +       ++ K  +E
Sbjct: 242 FFEFLSNLRPGEIVPLRAPFGFQIIKMVDAKVGKAKSLSEARGEIEQILIREQMAKLFSE 301

Query: 304 YVKKLRSNAIIHY 316
           Y++ +R  A I  
Sbjct: 302 YLQSIRQKAHIKI 314


>gi|313200363|ref|YP_004039021.1| sura domain-containing protein [Methylovorus sp. MP688]
 gi|312439679|gb|ADQ83785.1| SurA domain protein [Methylovorus sp. MP688]
          Length = 438

 Score =  127 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 40/315 (12%), Positives = 110/315 (34%), Gaps = 20/315 (6%)

Query: 16  LTTYFVLIIFCIVPIVSYKSW----AMSSRIRTTINGEVITDGDISKRIALLKLQKING- 70
           L     L    ++P V+  +         RI   ++  V+T+ +++ RI ++  Q     
Sbjct: 7   LMAGLFLWAGALLPHVAIAAQDGSVNKIDRIVAVVDQGVVTEKELNDRIEIVSAQLEKQG 66

Query: 71  -------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
                   LEK  ++ LI + L+ Q   ++G+  D + ++   ++ A    +   +F   
Sbjct: 67  NQLPPRNVLEKQILERLINDRLQLQYAAQTGLRVDDDQLDKTIMRIAEQNKMGVPEFKEA 126

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
           L  +GI    F++ +  + +   + + +   +    E E+        +           
Sbjct: 127 LAAEGIVYKKFREDIRNEILLARLREREVDNRVNVTESEVDNFLTTQSSRQDSSDEYEIS 186

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL---EKFASKIHDVSIGKAQYLLES 240
              I   +  +   +++  + AE++  +L    +      + +   + +  GK  +   +
Sbjct: 187 HILIRAPEDGSPEDLKRLREKAEDALKKLQAGEDFGQVSARVSDAPNALEGGKLGWKTAA 246

Query: 241 DLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPT 295
            +   F + L        +    +  G   + + D+R        +     ++  + +  
Sbjct: 247 QVPALFLEALKPMQVGQLSGILRSPNGFHILKLTDRRGGNTSTMVQQTHTRHILIKTSEV 306

Query: 296 KIEKHEAEYVKKLRS 310
             E      +  ++ 
Sbjct: 307 LSETEAKRKIDGIKQ 321



 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 53/144 (36%), Gaps = 2/144 (1%)

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGK 233
           +       T    I  +++ ++   +++I   ++            +++++     + G 
Sbjct: 288 STMVQQTHTRHILIKTSEVLSETEAKRKIDGIKQLIDNGEDFGEAAKRYSNDGSAANGGD 347

Query: 234 AQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-YLSAQ 291
             ++   D  PQF+  +        ++   +  G   I + ++R+       +      +
Sbjct: 348 LGWVNPGDTVPQFEKAMNALQPGQISDAVRSPFGWHLIQVLERRNQDMTREAERMKARQE 407

Query: 292 NTPTKIEKHEAEYVKKLRSNAIIH 315
               K ++   ++V++LR  A + 
Sbjct: 408 IRQRKADEAYQDWVRELRDRAYVE 431


>gi|254251452|ref|ZP_04944770.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa
           AUO158]
 gi|124894061|gb|EAY67941.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa
           AUO158]
          Length = 454

 Score =  127 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 41/306 (13%), Positives = 99/306 (32%), Gaps = 24/306 (7%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------LEKIAVQELIVE 83
             +   ++  +   +N +VIT  ++ +R++L+  +             L    + ++++E
Sbjct: 34  GSQGAQLADEVVAVVNNDVITGRELDQRVSLIARRLQQQNAPVPPADQLRAQVLNQMVLE 93

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            ++ Q+ +  GI  D  TV     + A+  G++ + + + L+ QG+  N F      + +
Sbjct: 94  RIQVQKAKDDGIRIDDATVQATLQRLAQANGMTLDQYRARLEAQGVPWNIFTNDARTELM 153

Query: 144 WPDVVKNDFMLKYGNLEMEIPAN----KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
              + + +   K    + E+       +                + +  +         Q
Sbjct: 154 LSKLREREVDSKITVSDAEVANYIASQRGPNAAQQQDLRFQHIFIKAPTNAPQTEIEAAQ 213

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN 259
           K+ +   +  +            +        G   +     L P       K +    N
Sbjct: 214 KKAEALLQQAMSGADFEKLARNNSEANDAKKGGDLGFKSPGALPPDVVQAASKLRPGQVN 273

Query: 260 P--YVTQKGVEYIAICDKRDLGGEIALK--------AYLSAQNTPTKIEKHEAEYVKKLR 309
           P       G E + + D+R   G  A           ++  +    K E    + +  +R
Sbjct: 274 PTLIRVPDGFEIVRLVDRRPSQGATAAAPKIVQTHVRHILIRVGEGKSEGQARQELLDIR 333

Query: 310 SNAIIH 315
               I 
Sbjct: 334 KQ--IE 337



 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/285 (10%), Positives = 87/285 (30%), Gaps = 18/285 (6%)

Query: 48  GEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
              IT  D ++    +  Q+     ++  +       +K            +       +
Sbjct: 163 DSKITVSD-AEVANYIASQRGPNAAQQQDL-RFQHIFIKAPTNAPQTEIEAAQKKAEALL 220

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN--------------DFM 153
           Q A +     +   +  +           + +  ++ PDVV+                  
Sbjct: 221 QQAMSGADFEKLARNNSEANDAKKGGDLGFKSPGALPPDVVQAASKLRPGQVNPTLIRVP 280

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
             +  + +      Q       +          I   + +++G  ++ + D  +      
Sbjct: 281 DGFEIVRLVDRRPSQGATAAAPKIVQTHVRHILIRVGEGKSEGQARQELLDIRKQIEAGG 340

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAI 272
                   ++        G   ++   +  P+F+  +        + P  T+ G   I +
Sbjct: 341 DFAKFARTYSQDGSASQGGDLGWISPGETVPEFERAMNSLQDGQISQPVRTEYGYHLIQV 400

Query: 273 CDKRDLGGEIALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            D+R+  G +  +  +        K E+  A+++++LR ++ + Y
Sbjct: 401 LDRREAEGSVQQQMDIARQAIGQRKAEQAYADWLRELRDSSYVQY 445


>gi|323493622|ref|ZP_08098743.1| survival protein SurA [Vibrio brasiliensis LMG 20546]
 gi|323312145|gb|EGA65288.1| survival protein SurA [Vibrio brasiliensis LMG 20546]
          Length = 432

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/313 (12%), Positives = 110/313 (35%), Gaps = 12/313 (3%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--- 69
           ++      + +        ++        I   +N  V+   DI   +  LK        
Sbjct: 1   MRFWKHALLALCATSTLNTAHAEPVALDNIAVIVNSGVVLQSDIDTSLKTLKANAKKSGQ 60

Query: 70  -----GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L +   ++LIV+T+++QE ++ G+  D N +N    + ARN   + E  S+ +
Sbjct: 61  SLPSEQVLREQVTEKLIVDTIQQQEAQRIGVRIDDNRLNEAIEEIARNNQQTVEQLSASI 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            ++G+    F++ +  +    +        +   L  E+      +   T      +   
Sbjct: 121 AQEGLSYAEFREQVRKEIAASEARNALVRRRINILPAEVDNLANILAKETNATVQYKIGH 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             +  N   ++  ++K+ +   E              ++     +  G   ++ + ++  
Sbjct: 181 IQLRVNDGDDKSAIEKQAQQLVEKLKEGADFSTMAYTYSKGPKALQGGDWGWMRKEEMPT 240

Query: 245 QFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKH 300
            F + +  +++ +   P+ +  G   + I D +    +        ++  + T    ++ 
Sbjct: 241 IFADQINLQNKGSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDEG 300

Query: 301 EAEYVKKLRSNAI 313
             + +K++     
Sbjct: 301 VQKDLKEITQRIK 313



 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/269 (11%), Positives = 79/269 (29%), Gaps = 4/269 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++     +L  +       KI   +L V     +   +         +        
Sbjct: 154 ILPAEVDNLANILAKETNATVQYKIGHIQLRVNDGDDKSAIEKQAQQLVEKLKEGADFST 213

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                S    +      G         +    I      +        +   I   +   
Sbjct: 214 MAYTYSKGPKALQGGDWGWMRKEEMPTIFADQINLQNKGSIIGPFRSGVGFHILKIEDVK 273

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK-LEKFASKI-HD 228
              TV    +      I    + +   VQK +K+  +          +  ++++      
Sbjct: 274 GLETVAVTEVNARHILIKPTVILSDEGVQKDLKEITQRIKSGKATFAEMAQQYSQDPGSA 333

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKA 286
              G+  Y       P+F++ +        + P+ T  G   + + D+R++   + ALK 
Sbjct: 334 AQDGELGYQTSEIYVPEFKHQVDTLPVGQISEPFKTVHGWHIVEVLDRREVDRTDSALKN 393

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                    K  +  + +++++R++A + 
Sbjct: 394 KAYRILFNRKFNEEASAWLQEIRASAYVE 422


>gi|27379215|ref|NP_770744.1| hypothetical protein bll4104 [Bradyrhizobium japonicum USDA 110]
 gi|27352366|dbj|BAC49369.1| bll4104 [Bradyrhizobium japonicum USDA 110]
          Length = 313

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 112/283 (39%), Gaps = 2/283 (0%)

Query: 36  WAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGI 95
            + +  I   +NG+ ITD DI +R  L  L        +  + ELI + +K +E +K G+
Sbjct: 28  PSRAQNIVVMVNGDPITDFDIDQRSKLDLLTTQKTPSRQEVINELIDDRVKLKEGKKYGV 87

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
               + +N  F   A+   ++ +  +  L+ +G+     K  +  + +W  +V+  F  K
Sbjct: 88  DPGVSDINQSFEGMAQRMRITTDQLTKSLEVKGVRPETLKARMKSEMVWTSLVRGRFKEK 147

Query: 156 YGNLEMEIPANKQKMKNITVREY-LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
               E ++    Q      ++       +   +      +    Q+      E       
Sbjct: 148 LMVGERDVAQAVQAQAGDKLQIEGTEYKMQPIVLIVPRGSSPAFQETRMKEAEQYRSRVA 207

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAIC 273
            C +         + +I ++     ++L    + +L  +   + T P VT+ G+E + +C
Sbjct: 208 SCEEANSLFRSTPNATIRESVTKTTAELPEALRKVLDDTPIGHLTAPEVTKAGIEMVVLC 267

Query: 274 DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            ++    +   K  +  +    K EK +  Y+ +LR  A+I Y
Sbjct: 268 SRKPTMIDTPKKREVREKMYQEKYEKTQKAYLDELRKAAMIEY 310


>gi|315648234|ref|ZP_07901335.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus vortex
           V453]
 gi|315276880|gb|EFU40223.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus vortex
           V453]
          Length = 399

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 95/303 (31%), Gaps = 25/303 (8%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           ++ +  +     +V IV   +    +     +N   IT   +   +             K
Sbjct: 96  MIASLVLAAALIVVLIVPPFAKGSGNEAVAKVNDVKITKDTLYNELV--------EAGGK 147

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             V  +I E L KQE+ K  IT     VN        +   S + F+  L + G+     
Sbjct: 148 QTVNSMITEELIKQELAKQSITVTDAEVNEEVDALKASF-PSEDQFNMALQQSGMTLEDL 206

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
           K     Q     ++      K    + EI     + K        +R             
Sbjct: 207 KGQTKTQVELKKLM----GDKIKVTDEEIKTIYDQNKESFATPEQVRASHIL-------- 254

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-S 253
               ++   +  +            ++        + G   +    ++ P F+    K  
Sbjct: 255 -VETKEEADEIVKQLKDGADFAAIAKEKNQDATKDTGGDLDFFGRGEMDPAFEEAAFKLK 313

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           ++  ++P  +  G   I + D+++         K  +  Q    K+ +  + Y+++L+  
Sbjct: 314 KDEISDPVKSSFGYHIIKLTDRKEATNPTLEDKKVEIRKQLENQKVYQESSAYIQELKDK 373

Query: 312 AII 314
           A I
Sbjct: 374 ATI 376


>gi|239831518|ref|ZP_04679847.1| Chaperone surA precursor [Ochrobactrum intermedium LMG 3301]
 gi|239823785|gb|EEQ95353.1| Chaperone surA precursor [Ochrobactrum intermedium LMG 3301]
          Length = 336

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 73/318 (22%), Positives = 131/318 (41%), Gaps = 8/318 (2%)

Query: 4   KVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL 63
           K+  +   F  +L+    L     V      +    S ++  ++G  IT+ DI  R+A L
Sbjct: 17  KMMIARPLFASMLSAAVCLTTLGTVA-APAFAAGAGSEVKVIVSGNAITNSDIQHRVAFL 75

Query: 64  KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
           KLQ+  G L ++A QEL  E LK+ E++  GI      V+  +   A    +S    +  
Sbjct: 76  KLQRKGGNLAQVAKQELTDEMLKRIEMKSRGIDISDRQVDEAYAGFATRNKMSLAQLNQL 135

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
           +++ G+  +HFK+Y+ +Q  W  +V   F       E E      K           R  
Sbjct: 136 MNQSGVTPDHFKKYIMVQMGWGRLVSARFRATGMVSEQEAVQRMLKDGGKKPVATEYRLQ 195

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
                    +    +  + K    +     ++C+   + A  I DV++     ++E  L 
Sbjct: 196 QVIFVVPASKRSPALLAKRKQEANALRSRFQNCDATRQQAKGILDVTVRDLGRIIEQQLP 255

Query: 244 PQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ------NTPTK 296
            ++ + +   S   TT P  T+KGVE++A+C  R +  +   +   S +          K
Sbjct: 256 NEWSKAIKSTSVGGTTPPQETEKGVEFLAVCSTRQVSDDRVAQLVFSMEGADSPAGQEKK 315

Query: 297 IEKHEAEYVKKLRSNAII 314
            E+   +Y+ +LR  A I
Sbjct: 316 AEQLSEKYLGELREKAKI 333


>gi|307249622|ref|ZP_07531608.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858320|gb|EFM90390.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 316

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 46/316 (14%), Positives = 105/316 (33%), Gaps = 15/316 (4%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +KL++   +L+       +S  + A+  R+   ++G  + +  + +    L  +  +   
Sbjct: 1   MKLISAKSLLVALVTAIGISQTATAIEERVVALVDGVPVMESQVQRA---LGKKANSEAN 57

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            K A++++I + L ++ ++++G+  +   V+      A   G++       LD QGI   
Sbjct: 58  HKAALEQIIDDLLVQKAVKEAGVKVNYAKVDQVIEDIAARNGITYGQLLDALDYQGITLE 117

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE--------YLIRTVL 184
            ++Q +A Q     V              ++ A  +++                  R   
Sbjct: 118 QYRQQIAQQMAMEQVRHISIGKSIQVDPKDVHAYAKELLEKDKANGKLKNVTGVQHRVSH 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK--FASKIHDVSIGKAQYLLESDL 242
             I    + N    + ++               +  K      +     G   Y      
Sbjct: 178 ILIKTTPVLNDIQAKAKLAQIVADIKAGKTTFEEAAKANSVDYLSAADGGDLGYNFLDIY 237

Query: 243 HPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKH 300
            P F +      Q   T P+ +Q G   + +   +               Q    + ++ 
Sbjct: 238 DPAFAKAASTAKQEQITAPFKSQFGWHILKVTGTQQGDRTEDAYNQRAYEQLVDKQAQEA 297

Query: 301 EAEYVKKLRSNAIIHY 316
             ++VK LR  A + Y
Sbjct: 298 AKDWVKALRKTADVQY 313


>gi|34499685|ref|NP_903900.1| survival protein surA [Chromobacterium violaceum ATCC 12472]
 gi|81711632|sp|Q7NQB0|SURA_CHRVO RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|34105536|gb|AAQ61890.1| survival protein surA precursor [Chromobacterium violaceum ATCC
           12472]
          Length = 429

 Score =  126 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 109/314 (34%), Gaps = 15/314 (4%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMS-SRIRTTINGEVITDGDISKRIALLKLQK---- 67
           +K      ++       + +  +      RI   +N  VIT  ++  R+     Q     
Sbjct: 1   MKKTLLALLIASVMQSALAAPATPVREVDRIVAVVNKNVITWQELQARVNEAIKQLEAQK 60

Query: 68  ----INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
                   LE+  ++++I E ++ Q     G+  +   V+      A+   LS     + 
Sbjct: 61  VAPPPREVLERQVLEQMITEEVQLQYAASGGLRIEDAAVDQAVANLAKQNKLSEAGLKAQ 120

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
           L K GI  +  +  +  +     +  ++   +    + E+    +  ++    EY + ++
Sbjct: 121 LAKDGITLDRLRADIRRELTISRLRDSEVASRVNVSDSEVDQAMKSAQSANRTEYHLASI 180

Query: 184 LFSIPDNKLQNQG-FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
           L ++P+     Q   + +++  A+               ++   + +  G   +   + L
Sbjct: 181 LVAVPERADAKQIDQLSQKVHKAQADLAAGQPFAKVSAAYSDAPNALKGGDMGWRSATSL 240

Query: 243 HPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKI 297
             +F Q L +      T+   TQ+G     + DKR     +  E     ++  +      
Sbjct: 241 PQEFVQLLEQMKVGADTDVIRTQQGFFIFKLVDKRSGGAPMMVEQYHPRHILIRTNEAVS 300

Query: 298 EKHEAEYVKKLRSN 311
           E      + ++R  
Sbjct: 301 EADAKARIDQVRDR 314



 Score =  107 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/286 (11%), Positives = 87/286 (30%), Gaps = 19/286 (6%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKING--------ELEKIAVQELIVETLKKQEIE 91
           S + + +N   ++D ++ + +   +               + + A  + I +  +K    
Sbjct: 147 SEVASRVN---VSDSEVDQAMKSAQSANRTEYHLASILVAVPERADAKQIDQLSQKVHKA 203

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
           ++ +                   L   D           +              DV++  
Sbjct: 204 QADLAAGQPFAKVSAAYSDAPNALKGGDMGWRSATSLPQEFVQLLEQMKVGADTDVIRTQ 263

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                           ++     +           I  N+  ++   + RI    +  +R
Sbjct: 264 QGFFI------FKLVDKRSGGAPMMVEQYHPRHILIRTNEAVSEADAKARIDQVRDRIMR 317

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYI 270
             K  +  + ++    +   G   ++   DL P+F+  +        + P  T  G   I
Sbjct: 318 GAKFADMAKLYSEDGSNAKGGDLGWVNMGDLVPEFEKAMVSLPIGQVSQPVRTPFGWHLI 377

Query: 271 AICDKRDLGGEIALKA-YLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            +  KR+       +   +  Q    K+E+   ++V++LR +A + 
Sbjct: 378 LVEGKRNQDVSSDHEKMAVKQQIRARKMEQAYTDWVRQLRDSAFVE 423


>gi|261364046|ref|ZP_05976929.1| SurA/PPIASE domain protein [Neisseria mucosa ATCC 25996]
 gi|288568080|gb|EFC89640.1| SurA/PPIASE domain protein [Neisseria mucosa ATCC 25996]
          Length = 328

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 79/286 (27%), Gaps = 17/286 (5%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLK------LQKINGELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT   +++ +   +       Q  + EL +  + +LI ++L  Q  ++
Sbjct: 51  SDGIAAIADNEVITRRQLAQAVERARRTIPKGTQIGDNELREQVLAQLINQSLIVQAGKR 110

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
                +    N                 +S   +        K           V   + 
Sbjct: 111 ----KNIQADNAEIEAVIAANPSLKTPSASIRREIADSIIAEKVRQQAVMQHSRVSDAEV 166

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
                    E    +                   I  +        +  I+         
Sbjct: 167 ARAI-----EQAKQQGIALPEGEPLRQYNAQHILIKADNENAAAGAESTIRKIYAQARSG 221

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                   +++      S G   +  +  + P F+  + K      + P  TQ G   I 
Sbjct: 222 ADFAGLARQYSQDGSASSGGNLGWFADGMMVPPFEEAVHKLKPGQVSPPVRTQFGWHIIK 281

Query: 272 ICDKRDLGGEIALK-AYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           + D RD G     +   +    +  K E+ E   +++L   A I  
Sbjct: 282 LNDVRDAGTPEERQHNTIRQYLSRQKAEQAEINLLRELHEGAHIDI 327


>gi|186475166|ref|YP_001856636.1| SurA domain-containing protein [Burkholderia phymatum STM815]
 gi|184191625|gb|ACC69590.1| SurA domain protein [Burkholderia phymatum STM815]
          Length = 463

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 103/321 (32%), Gaps = 25/321 (7%)

Query: 18  TYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING------- 70
           +  +        +    S      I   +N  VIT  ++  R+ L+  +           
Sbjct: 21  SILLAGPAHAQALNGSGSAQTVDTIAAVVNNGVITQRELDMRVGLITKRLNQQHAPIPPA 80

Query: 71  -ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
            +L +  + ++++E ++ Q+  + GIT D  TV     + A+   L  + + + ++ QG+
Sbjct: 81  DQLRQQVLNQMVLERIQLQKAREDGITVDDATVQRTLERLAQANNLQLDMYRARIEAQGV 140

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT----VREYLIRTVLF 185
               F      + I   + + +   K    + E+       +  T       +L    L 
Sbjct: 141 PWTTFMGDAKTELILSRLREKEVDSKVTVSDAEVANYIASQRGPTAGLASDLHLEHIFLK 200

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ 245
           +  +    +    Q +     +  L+        +  +        G   +   S L  +
Sbjct: 201 APLNASQTDIEAAQAKANALLQEALKGDNFGKLAKSNSQAPDASKGGDLGFQAPSRLPAE 260

Query: 246 FQNLLKKSQNNTTNP--YVTQKGVEYIAICDKRDLGGEIALK---------AYLSAQNTP 294
           F       +    NP    T  G E + + ++R   G  +            ++  +   
Sbjct: 261 FVTAAATLRPGQVNPSVIRTNDGFEIVRLVERRSGQGSASADSTKLVQTHVRHILLRVGD 320

Query: 295 TKIEKHEAEYVKKLRSNAIIH 315
              E    + + ++R    I 
Sbjct: 321 GMSEPQARQKLLEIRQE--IE 339



 Score =  102 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 49/139 (35%), Gaps = 2/139 (1%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
               +     + +      QK ++  +E              ++        G   ++  
Sbjct: 310 HVRHILLRVGDGMSEPQARQKLLEIRQEIEAGQGDFDKFARTYSQDGSASQGGDLGWISP 369

Query: 240 SDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK-AYLSAQNTPTKI 297
            +  P+F+  +     N  + P  ++ G   I +  +R+  G ++ +           K 
Sbjct: 370 GETVPEFERAMNSLQDNQISQPVRSEYGYHLIQVLGRREAEGSVSQQMDLARQAIGQRKA 429

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           E+  A+++++LR  A + Y
Sbjct: 430 EQAYADWLRELRDTAYVDY 448


>gi|307132630|ref|YP_003884646.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Dickeya dadantii
           3937]
 gi|306530159|gb|ADN00090.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Dickeya dadantii
           3937]
          Length = 430

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 37/309 (11%), Positives = 105/309 (33%), Gaps = 16/309 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   +   +++ +    ++I   ++  V+ + DI+  +  +KL              L
Sbjct: 7   LVLGLALSANMAFAAPQEVNKIAAVVDNSVVLESDINSLLQSVKLNAQEAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A    +S +   S L  +G+  +
Sbjct: 67  RHQILERLIMDNIILQMAQKMGVQVTDEQLDRSIANIAAQNRMSVDQLRSRLAAEGVSFD 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +    I  +V  ++   +   L  E+ +  Q++ +       +      IP  + 
Sbjct: 127 TYRSQIRKDMIIAEVRNSEVRRRVTVLPQEVDSLAQQIASQGASGPEVNLSQILIPLPEN 186

Query: 193 QNQGFVQKRIKDAE---ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
             Q  V K    A    +   +          +++    +  G+  +    +L   F + 
Sbjct: 187 PTQDQVDKAESLANRLVKEASQGADFGKLAITYSADPQALKGGQMGWGRPQELPSLFAER 246

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
           L    +     P  +  G   + + D R     +        ++  + +    +      
Sbjct: 247 LTNPQKGQVIGPIRSGVGFHILRVNDTRGGDQSVSVTEVHARHILLRTSVVMNDAQARAR 306

Query: 305 VKKLRSNAI 313
           ++ + S   
Sbjct: 307 LEDIASQIK 315



 Score = 85.1 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/309 (11%), Positives = 86/309 (27%), Gaps = 26/309 (8%)

Query: 28  VPIVSYKSWAMSSRIRTTI-NGEV-----ITDGDISKRIALLKLQKINGELEKIAVQELI 81
           V   +Y+S      I   + N EV     +   ++      +  Q  +G         L 
Sbjct: 123 VSFDTYRSQIRKDMIIAEVRNSEVRRRVTVLPQEVDSLAQQIASQGASGPEVN-----LS 177

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
              +   E         + ++    V+ A       +   ++             +   Q
Sbjct: 178 QILIPLPENPTQDQVDKAESLANRLVKEASQGADFGKLAITYSADPQALKGGQMGWGRPQ 237

Query: 142 SIWPDVVKND-----------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
            +     +                  G   + +   +   ++++V E   R +L      
Sbjct: 238 ELPSLFAERLTNPQKGQVIGPIRSGVGFHILRVNDTRGGDQSVSVTEVHARHILLRTSVV 297

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL 249
               Q   +     ++    +L    N  ++ +         G   +       P F++ 
Sbjct: 298 MNDAQARARLEDIASQIKSGKLSFT-NAAKQLSQDPGTANQGGDLGWSSPDMYDPSFRDA 356

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
             +  +   + P  +  G   I + D R +   + A K          K  +    ++++
Sbjct: 357 LTQLKKGEISAPVHSSFGWHLIQLLDTRQVDKTDAAQKDRAYRMLFNRKFAEEAQTWMQE 416

Query: 308 LRSNAIIHY 316
            R+ A +  
Sbjct: 417 KRAAAYVKI 425


>gi|209693973|ref|YP_002261901.1| chaperone SurA precursor [Aliivibrio salmonicida LFI1238]
 gi|208007924|emb|CAQ78055.1| chaperone SurA precursor [Aliivibrio salmonicida LFI1238]
          Length = 436

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 35/317 (11%), Positives = 107/317 (33%), Gaps = 16/317 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +K     F+  +  ++ I  + +     R+   ++  V+   DI   +  +K+       
Sbjct: 1   MKNWKIPFISSLLLMLTINVHAAPVELDRVIAIVDEGVVLQSDIETSLKTVKINAQEKGQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L +  +++LI++T++ Q+ EK GI  D   +       A++  ++        
Sbjct: 61  PLPEENVLREQVLEKLILDTIQSQQAEKMGIRIDDTRLEEALNNIAKDNKMTLAQLQQKA 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
             QG+    F++ +  +    +        +   L  E+ +    +   T      +   
Sbjct: 121 ASQGLAYADFREQIRKEIAASEARNAQVRRRINILPQEVESLALLLSEETQATVQYKISH 180

Query: 185 FSIPDN--KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
             +  +      +  ++K+  +  E   +          ++     +  G   ++ + ++
Sbjct: 181 IQLRTDGATQAEKEALEKQALELTERLKQGADFATMAYTYSKGPKALQGGDWGWMRKEEM 240

Query: 243 HPQFQNLLKKSQN-NTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIE 298
              F + +      +   P+ +  G   I I D +    +        ++  + +    +
Sbjct: 241 PTIFADQITGQGKSSIIGPFRSGVGFHIIKIDDVKGLETVAVTEVNARHILVKTSVIMSD 300

Query: 299 KHEAEYVKKLRSNAIIH 315
           +     + ++   + I 
Sbjct: 301 EGAERLLNQI--TSDIE 315



 Score = 73.2 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 14/142 (9%), Positives = 46/142 (32%), Gaps = 4/142 (2%)

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQY 236
              R +L                  +   +            ++++       + G+  +
Sbjct: 285 VNARHILVKTSVIMSDEGAER-LLNQITSDIESGKETFAAMAQRYSQDPGSAAANGELGF 343

Query: 237 LLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKAYLSAQNTP 294
                  P+F++ ++       + P+ T  G     + ++R +   + A+K         
Sbjct: 344 QTPDLYVPEFKHQVEILPVGQISKPFKTVHGWHIAEVLERRQVDRTDAAMKNKAYRILMN 403

Query: 295 TKIEKHEAEYVKKLRSNAIIHY 316
            K  +    +++++R++A +  
Sbjct: 404 RKFNEESGAWLQEIRASAYVEI 425


>gi|260775523|ref|ZP_05884420.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260608704|gb|EEX34869.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 431

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 34/313 (10%), Positives = 109/313 (34%), Gaps = 12/313 (3%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +KL     + +I                ++   +N  V+   DI   +  ++        
Sbjct: 1   MKLWKQTLLGLIAASQLSFVQAEPVELDKVAVIVNSGVVLQSDIETSLKTIRANAKKNNQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L +   ++LIV+T+++QE E+ G+  D N +N    + A+N   + +  ++ +
Sbjct: 61  SLPDEATLREQVTEKLIVDTIQQQEAERIGVRIDDNRLNEAIDEIAKNNNQTLQQLNTSI 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            ++G+    F++ +  +    +        +   L  E+      +   T      +   
Sbjct: 121 AEEGLSYAQFREQVRKEIAANEARNALVRRRINILPAEVDNLANILAKETNATVQYKIGH 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             +  N   ++  ++++     +   +          ++     +  G   ++ + ++  
Sbjct: 181 IQLRVNDGDDKAAIEEKANQIVKELNQGSDFSTMAYTYSKGPKALQGGDWGWMRKEEMPT 240

Query: 245 QFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKH 300
            F + +  +++ +   P+ +  G   + I D +    +        ++  + T    ++ 
Sbjct: 241 IFADQINLQNKGSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDEG 300

Query: 301 EAEYVKKLRSNAI 313
             + +  +     
Sbjct: 301 VQKELLDITRRIQ 313



 Score = 75.5 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 78/269 (28%), Gaps = 4/269 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++     +L  +       KI   +L V     +   +         +N       
Sbjct: 154 ILPAEVDNLANILAKETNATVQYKIGHIQLRVNDGDDKAAIEEKANQIVKELNQGSDFST 213

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                S    +      G         +    I      +        +   I   +   
Sbjct: 214 MAYTYSKGPKALQGGDWGWMRKEEMPTIFADQINLQNKGSIIGPFRSGVGFHILKIEDVK 273

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK-LEKFASKI-HD 228
              TV    +      I    + +   VQK + D             +  ++++      
Sbjct: 274 GLETVAVTEVNARHILIKPTVILSDEGVQKELLDITRRIQSGKATFAEMAQQYSQDPGSA 333

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKA 286
              G+  Y       P+F++ +        + P+ T  G   + + D+R++   + ALK 
Sbjct: 334 AQQGELGYQTSDLYVPEFKHQVDTLPVGQISEPFKTVHGWHIVEVMDRREVDRTDSALKN 393

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                    K  +  + +++++R++A + 
Sbjct: 394 KAYRIIFNRKFNEEASAWLQEIRASAFVE 422


>gi|78222152|ref|YP_383899.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           metallireducens GS-15]
 gi|78193407|gb|ABB31174.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           metallireducens GS-15]
          Length = 330

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 44/327 (13%), Positives = 104/327 (31%), Gaps = 17/327 (5%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +  + S    L     +  +  +   VS      + ++   +NG  I +  +   +A L 
Sbjct: 1   MRLNRSLTFGLFLLGVMFTLHLLQTPVSADEVNKTGKVVARVNGVPIYENALQSHLAALA 60

Query: 65  LQKI-----------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
            +             N   +K A+  LI   L +Q   +  +T     V+    +     
Sbjct: 61  NKGRASGFARDPAKMNDYQKKKALYSLIDAELLRQASNQQQVTDLDAKVSKRLQEVKGKF 120

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
                   +   + G   + F   L     + + + +  ++     + EI    +     
Sbjct: 121 PDEEAFLKNLQAR-GKTLDIFVAELRDGIRYDEYLTSKKVIGVPVPDEEIQKFYRDNPTS 179

Query: 174 T--VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
                +  +R +L     +  +     +K+  +     +R        ++ ++     S 
Sbjct: 180 FSVPEQIKVRHILIEPDGSTAEAVAKAEKKAGEIRNRVVRDKDFAAVAKEVSACSTASSG 239

Query: 232 GKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYL 288
           G   Y+    +  +F +       N  + P  T+ G   + + DK+ +       ++ ++
Sbjct: 240 GDLGYVSRGTMPAEFDKVAFSLKLNEVSEPVRTKFGFHIMEVLDKKPVTVRPYSEVREFI 299

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           S        EK    +  +LR  A I 
Sbjct: 300 SRYLQRFDDEKRLNAHTLELRKKATIE 326


>gi|170699177|ref|ZP_02890230.1| SurA domain [Burkholderia ambifaria IOP40-10]
 gi|170135902|gb|EDT04177.1| SurA  domain [Burkholderia ambifaria IOP40-10]
          Length = 452

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 100/299 (33%), Gaps = 22/299 (7%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------LEKIAVQELIVETLK 86
              ++  +   +N +VIT  ++ +R+ L+  +             L    + ++++E ++
Sbjct: 35  GAQLADEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPADQLRAQVLNQMVLERIQ 94

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
            Q+ +  GI  D  TV     + A+  G++ E + + L+ QG+  + F      + +   
Sbjct: 95  VQKAKDDGIRIDDATVQSTLQRLAQANGMTLEQYRARLEAQGVPWSVFTSDARTELMLSK 154

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMK----NITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           + + +   K    + E+       +    +           + +  +         QK+ 
Sbjct: 155 LREREVDGKITVSDAEVVNYIASQRGPSASQQQDLRFQHIFIKAPTNAPQAEIEVAQKKA 214

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP-- 260
           +   +            +  +        G   +     L P+  +   K +    NP  
Sbjct: 215 EALLQQATFGADFEKLAKNNSEANDAKKGGDLGFKAPGALPPEVVDAASKLRPGQVNPTL 274

Query: 261 YVTQKGVEYIAICDKRDLGGEIALK--------AYLSAQNTPTKIEKHEAEYVKKLRSN 311
                G E + + D+R   G  A           ++  +    K E    + ++ +R  
Sbjct: 275 IRVPDGFEIVRLVDRRQSQGTSAAAPKIVQTHVRHILLRVGEGKSEGQARQQLQDIRRQ 333



 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 31/287 (10%), Positives = 91/287 (31%), Gaps = 19/287 (6%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           ++G+ IT  D ++ +  +  Q+     ++  +       +K            +      
Sbjct: 160 VDGK-ITVSD-AEVVNYIASQRGPSASQQQDL-RFQHIFIKAPTNAPQAEIEVAQKKAEA 216

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN--------------D 151
            +Q A       +   +  +           + A  ++ P+VV                 
Sbjct: 217 LLQQATFGADFEKLAKNNSEANDAKKGGDLGFKAPGALPPEVVDAASKLRPGQVNPTLIR 276

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
               +  + +      Q       +          +   + +++G  +++++D       
Sbjct: 277 VPDGFEIVRLVDRRQSQGTSAAAPKIVQTHVRHILLRVGEGKSEGQARQQLQDIRRQVEA 336

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                     ++        G   ++   +  P+F+  +        + P  T+ G   I
Sbjct: 337 GGDFAKFARTYSQDGSASQGGDLGWISPGETVPEFERAMNNLQDGQISQPVRTEYGYHLI 396

Query: 271 AICDKRDLGGEIALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D+R+  G +  +  +        K E+  A+++++LR ++ + Y
Sbjct: 397 QVIDRRESEGSVQQQMDIARQAIGQRKAEQAYADWLRELRDSSYVQY 443


>gi|303245475|ref|ZP_07331759.1| SurA domain protein [Desulfovibrio fructosovorans JJ]
 gi|302493324|gb|EFL53186.1| SurA domain protein [Desulfovibrio fructosovorans JJ]
          Length = 339

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 102/305 (33%), Gaps = 25/305 (8%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN----------GELEKIAVQELIVET 84
           +  +  R+   +NG++IT  D+  R+A L  +              EL +  ++ +I + 
Sbjct: 33  ATQLVDRVVAVVNGKLITLFDLDSRVAELVQRTQGISFAPGDPRAEELRRQVLESMINDI 92

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
           L +QE  +  I      ++    +  +   L+   F + L K+G+    F++ +   ++ 
Sbjct: 93  LIEQEAARLKINVSETELDSQIDELKKKNNLTQAQFQAELAKEGLTLKEFRKRMREDNMK 152

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
             ++      K    + EI    +K K        I     S   + +      ++  + 
Sbjct: 153 KRLLGFMVHRKVLVTDDEIRDYYEKHKATLSTTKSILGPKVSGNISFIMVP-TKKQAEEL 211

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVT 263
            ++         +   KF+        G    +   DL  P    L        + P + 
Sbjct: 212 RQKIGAGTITFADAARKFSIGPGRDQGGDLGDVQVKDLAPPLRDALTAVPAGQVSQPVML 271

Query: 264 QKGVEYIAICDKRDL-------------GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
                 + +   ++                  +++  +       K +K   +Y+  LRS
Sbjct: 272 DGKAVLLKLRTGKNAAPAKTPQPAPSAGPSFESVRNQIQEMLYKQKFDKLFQDYMDNLRS 331

Query: 311 NAIIH 315
            A+I 
Sbjct: 332 KAVIE 336


>gi|323524758|ref|YP_004226911.1| SurA domain-containing protein [Burkholderia sp. CCGE1001]
 gi|323381760|gb|ADX53851.1| SurA domain protein [Burkholderia sp. CCGE1001]
          Length = 468

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 43/316 (13%), Positives = 101/316 (31%), Gaps = 22/316 (6%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE-------- 71
           FV +       ++         I   +N  VIT  ++ +R+ L+  +             
Sbjct: 37  FVSVAPVQAQALAGNRGQTVDTIAAVVNNGVITRRELDERVNLITRRLNQQNAPIPPADQ 96

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           L +  + ++++E ++ Q+ ++ GI  D   V     + A+   LS + + + ++ QG+  
Sbjct: 97  LRQQVLNQMVLERIQLQKAKEDGINVDDAAVQKTLERLAQANNLSLDVYRARIEAQGVPW 156

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN----KQKMKNITVREYLIRTVLFSI 187
             F      +     + + +   K    + E+       +      T   ++    L + 
Sbjct: 157 ATFTSDARTELTLSRLREKEVDSKVTVSDAEVANYIASQRGPNAGATSDLHMEHIFLKAP 216

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
            +    +    QK+ +                +  +        G   Y   S L P+F 
Sbjct: 217 LNAPQTDIEAAQKKAEALLAEAKGGANFGKLAKSNSQAPDAAKGGDMGYAAPSKLPPEFV 276

Query: 248 NLLKKSQNNTTNP--YVTQKGVEYIAICDKRDLGGE--------IALKAYLSAQNTPTKI 297
                 +    NP    T  G E + + D+R   G              ++  +      
Sbjct: 277 KAASALRPGEVNPEVIRTNDGFEVVRLVDRRAGQGTSSDAPKLVQTHVRHILLRVGDGMS 336

Query: 298 EKHEAEYVKKLRSNAI 313
           E    + + +++    
Sbjct: 337 EPQARQKLLEIKKEIQ 352



 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 16/145 (11%), Positives = 51/145 (35%), Gaps = 2/145 (1%)

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
              +          +      ++   ++++ + ++              ++        G
Sbjct: 315 DAPKLVQTHVRHILLRVGDGMSEPQARQKLLEIKKEIQAGGDFAKFAHTYSQDGSSSQGG 374

Query: 233 KAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK-AYLSA 290
              ++   +  P+F+  +        ++P  ++ G   I + ++R+  G IA +      
Sbjct: 375 DLGWISPGETVPEFERAMNTLQDGQISDPVRSEYGYHLIQVLERREAQGSIAQQMDLARQ 434

Query: 291 QNTPTKIEKHEAEYVKKLRSNAIIH 315
                K E+  A+++++LR  A + 
Sbjct: 435 AIGQRKAEQAYADWLRELRDTAYVE 459


>gi|94266120|ref|ZP_01289835.1| PpiC-type peptidyl-prolyl cis-trans isomerase [delta
           proteobacterium MLMS-1]
 gi|93453317|gb|EAT03757.1| PpiC-type peptidyl-prolyl cis-trans isomerase [delta
           proteobacterium MLMS-1]
          Length = 335

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 108/294 (36%), Gaps = 19/294 (6%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKING-----------ELEKIAVQELIVETLKKQ 88
            R+   +NGE+IT  ++ + +A ++ Q +             E  +  +  +I   L +Q
Sbjct: 38  DRVVAEVNGEIITMSELEREMAGVEQQVLQQAPAADREQALTEARQQVLSGMIDRLLARQ 97

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
           + ++ GI      V+    Q   +  ++ E+  + + +      ++++ L  Q +   ++
Sbjct: 98  QADRLGIRVGEREVDEAIAQILADNRITMEELEAEIARHHGSMENYRRDLQTQILQSRLL 157

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
             +   +    E  I    Q+             +L    +    +    ++  + AEE 
Sbjct: 158 SQEVRERVVIPERRIKEYYQQHHQEQTSPEEAYHILQIGFNWPPGDDEAREQARRQAEEI 217

Query: 209 RLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQ 264
             +  +  +      +++      + G      + +L     +++ +      +    T 
Sbjct: 218 HRQARQGADFRELARRYSDLPSARNDGDLGVFQKDELAGIMLEHIPELEPGEISTILETA 277

Query: 265 KGVEYIAIC----DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            G ++  +     + R  G    LK  +  +     +E+  +++VK+LR N  I
Sbjct: 278 AGYQFFKLLSNQGELRATGSYEELKGKIREKLYQQALEEQFSKWVKELRENDYI 331


>gi|219870954|ref|YP_002475329.1| peptidyl-prolyl cis-trans isomerase SurA [Haemophilus parasuis
           SH0165]
 gi|219691158|gb|ACL32381.1| peptidyl-prolyl cis-trans isomerase SurA [Haemophilus parasuis
           SH0165]
          Length = 312

 Score =  125 bits (314), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 53/315 (16%), Positives = 110/315 (34%), Gaps = 15/315 (4%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +  T    +      + ++ S     R+  T++G  I    + +    L  +       K
Sbjct: 1   MKFTQVKSLFIAGFALFAFSSANAEERVVATVDGYPIMQSQVKQA---LGKKANTEANRK 57

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
            A++ +I + + ++ I++SGI  D   V+      A   G++       LD QGI  + +
Sbjct: 58  AALETIIDDFVVQRAIKESGIKVDYAYVDQMMEDVAAQNGITYGQLLDALDYQGISLSQY 117

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE----------YLIRTVL 184
           +Q LA Q +   V +            ++ +  + M +               Y I  +L
Sbjct: 118 RQQLAHQLLMEQVRQQSIGNSIQVDPKDVQSLAKDMLDKAKTNGTLETVSATEYRISHIL 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
                     Q   +     A+    ++  +          I  +  G   +        
Sbjct: 178 IKTTPILNDMQAKAKLLSITADIKSGKITFEEAAKINSVDYISGIDGGDLGFNFLDAYDS 237

Query: 245 QFQNL-LKKSQNNTTNPYVTQKGVEYIAICD-KRDLGGEIALKAYLSAQNTPTKIEKHEA 302
            F N+  K   +  ++P+ +Q G   + + D +R    E A       Q    +++    
Sbjct: 238 TFANIASKSKIDVISSPFKSQFGWHILKVTDTRRGDRTEDAYLQKAYEQLIDKQVQVASK 297

Query: 303 EYVKKLRSNAIIHYY 317
           +++K LRS   I Y+
Sbjct: 298 DWIKVLRSKLDIKYF 312


>gi|270263924|ref|ZP_06192192.1| chaperone SurA, precursor [Serratia odorifera 4Rx13]
 gi|270042117|gb|EFA15213.1| chaperone SurA, precursor [Serratia odorifera 4Rx13]
          Length = 432

 Score =  125 bits (314), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 34/309 (11%), Positives = 105/309 (33%), Gaps = 16/309 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   +    ++ +     ++   ++  V+ + D++  +  +KL              L
Sbjct: 7   LILGLVVCANTAFAAPQEVDKVAAVVDNGVVLESDVNSLLQSVKLNAQQAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ ++ Q  +K GI      ++      A    +S +   S L  +G+  N
Sbjct: 67  RHQILERLIMDNIQLQMAKKMGIAVSDADLDKAIGNIAAQNKMSIDQMRSRLAYEGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + +  +V  N+   +   L  E+ A  +++      +  +      IP  + 
Sbjct: 127 TYRSQIRKEMLISEVRNNEVRRRVTILPQEVDALAKQVGAQNGSDTEMNISHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            +Q  V +    A++                 +++    +  G   +    ++   F + 
Sbjct: 187 PSQQQVDEAEALAKKLMGEINGGADFGKLAISYSADSQALKGGNMGWGKLQEIPTLFAER 246

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
           L    + +   P  +  G   + + D R     +        ++  + +    +      
Sbjct: 247 LASAKKGDVVGPIRSGVGFHILKVNDIRGANQSVSVTEVHARHILLKPSVVLTDDQARAK 306

Query: 305 VKKLRSNAI 313
           ++ +     
Sbjct: 307 LQAVAEAIK 315



 Score = 87.0 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 84/285 (29%), Gaps = 17/285 (5%)

Query: 47  NGEV-----ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           N EV     I   ++      +  Q  +     I+   LI       + +       +  
Sbjct: 143 NNEVRRRVTILPQEVDALAKQVGAQNGSDTEMNIS-HILIPLPENPSQQQVDEAEALAKK 201

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-------FML 154
           +       A    L+    +     +G      K           +              
Sbjct: 202 LMGEINGGADFGKLAISYSADSQALKGGNMGWGKLQEIPTLFAERLASAKKGDVVGPIRS 261

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
             G   +++   +   ++++V E   R +L         +Q    K    AE  +    K
Sbjct: 262 GVGFHILKVNDIRGANQSVSVTEVHARHILLKPSVVLTDDQA-RAKLQAVAEAIKSGNAK 320

Query: 215 DCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAI 272
             ++ ++ +      +  G   +       P F++  +K ++   + P  +  G   I +
Sbjct: 321 FADEAKQLSQDPGSALQGGDLGWASPDIYDPAFRDALMKLNKGEVSKPVHSSFGWHLIQL 380

Query: 273 CDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            D R +   + A K          K  +    ++++ R+ A +  
Sbjct: 381 LDTRQVDKTDAAQKDRAYRMLFNRKFAEEAQTWMQEQRAQAYVKI 425


>gi|293391019|ref|ZP_06635353.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951553|gb|EFE01672.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 310

 Score =  125 bits (314), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 41/314 (13%), Positives = 98/314 (31%), Gaps = 19/314 (6%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWA-MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +      ++F  +      +      ++  T+NG  I +  +   I             +
Sbjct: 1   MKMNLKFVLFAAIGFFVLAAHVHAEEKVVATVNGIPILESQVQSAI------NKKTNDRQ 54

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
            A+ ++I + L  Q +++S +  ++  ++      A   GL+       LD QGI    +
Sbjct: 55  AALNKVIDDILVDQAVKESDVKVNNAQIDQIIEGIAAQNGLTFGQLLDALDYQGISYRAY 114

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEI---------PANKQKMKNITVREYLIRTVLF 185
           +Q +A Q +  +V  +           ++          A  +               + 
Sbjct: 115 RQQIAQQVMMSEVRNHAISQSVDVSREQVEALAKKMLDEAKAKGSVAQISDTQYEVRHIL 174

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQY-LLESDLH 243
              +  L +     +  +   +         +   K++       + G   Y   E  + 
Sbjct: 175 LKLNPLLNDAQAKAQLEQIRADIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPEMYVG 234

Query: 244 PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKHEA 302
           P  Q +        + P+ T+ G   + + + R               Q    +++    
Sbjct: 235 PFNQAVRTTKPGVISAPFRTEFGWHILEVTNTRQADRTEDAYRQKAYEQIVNQQLQDSAR 294

Query: 303 EYVKKLRSNAIIHY 316
           ++V+ LR    I Y
Sbjct: 295 DWVQALRKRVDIKY 308


>gi|261400512|ref|ZP_05986637.1| SurA/PPIASE domain protein [Neisseria lactamica ATCC 23970]
 gi|269209772|gb|EEZ76227.1| SurA/PPIASE domain protein [Neisseria lactamica ATCC 23970]
          Length = 358

 Score =  125 bits (314), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 78/286 (27%), Gaps = 17/286 (5%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKIN------GELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT   +++ +A  K            EL    + +L+ ++L  Q  ++
Sbjct: 81  SDGIAAVADNEVITRRRLAQAVADAKANLPKDVQIGDEELTGQVLMQLVNQSLIVQAGKR 140

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
                +           A          +    +        K           V + + 
Sbjct: 141 R----NIQASEAEIDAAAAQNPQLKHLSAEQRRELADSIIAEKVRQQAVMQNSRVSEAEV 196

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
                    E    +             R     I  +        +  I+   +     
Sbjct: 197 DRFI-----EQAQKQGITLPEGEPLRQYRAQHILIKADGENAAVGAESTIRKIYDQARNG 251

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                   +++      + G   +  +  +   F+  +        + P  TQ G   I 
Sbjct: 252 TDFSGLARQYSQDAGAGNGGDLGWFSDGVMVAPFEAAVHALKPGQVSAPVRTQFGWHIIK 311

Query: 272 ICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           + + RD    E  ++  +       K E+  AE ++ L S A I  
Sbjct: 312 LNEVRDAGTPEERIRNSVRQYIFQQKAEQATAELLRDLHSGAYIDI 357


>gi|226946688|ref|YP_002801761.1| peptidyl-prolyl cis-trans isomerase SurA [Azotobacter vinelandii
           DJ]
 gi|226721615|gb|ACO80786.1| Peptidyl-prolyl cis-trans isomerase SurA [Azotobacter vinelandii
           DJ]
          Length = 432

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 100/287 (34%), Gaps = 15/287 (5%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKL--------QKINGELEKIAVQELIVETLKKQEIE 91
            RI   I+ +V+    + +R+  ++              +L    ++ LI+E+++ Q   
Sbjct: 33  DRIVAIIDNDVVMQTQLDRRLREVEQTIAKRGAQLPPRDQLVSQVLERLILESIQLQMGS 92

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
           ++GI      +       A+  GL+ E F + L + G+  +  ++ +  + I   V +  
Sbjct: 93  RAGIRIGDEELAQAMATIAQRNGLTLEQFQAALARDGLSFDEAREQVRREMIISRVRQRV 152

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
              +    + E+                 R    +IP         +Q   +   E   +
Sbjct: 153 VADRIQISDHEVQNFLASDLGKLQLSEEFRLANITIPLPDGAPPEQIQAAEQQVLEIYRQ 212

Query: 212 LPKDCNKLE---KFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGV 267
           L    +  +     ++    +  G+  +   + L P F NL+ +      T P  T  G 
Sbjct: 213 LSDGADFAQLAITRSAGETALEGGEIGWRRAAQLPPPFDNLVSQLPVGGVTEPVRTPGGY 272

Query: 268 EYIAICDKRDLGG---EIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             I + +KR       +     ++  + +  + +      ++++   
Sbjct: 273 IIIKLLEKRGGSAQIRDEVHVRHILIKPSEIRTDIDARRLIERIHER 319



 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 51/138 (36%), Gaps = 3/138 (2%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
                 I  ++++     ++ I+   E  L         + F+      ++ G   ++  
Sbjct: 292 HVRHILIKPSEIRTDIDARRLIERIHERILNGEDFAELAKSFSEDPGSALNGGDLNWIDP 351

Query: 240 SDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-YLSAQNTPTKI 297
           + L P+F+ ++ K+     + P+ +  G   + +  +R       ++           K 
Sbjct: 352 NALVPEFREMMAKTPAGELSPPFKSPFGWHVLEVLGRRATDSSTQVREQQAMNVLRNRKY 411

Query: 298 EKHEAEYVKKLRSNAIIH 315
           ++    +++++R  A + 
Sbjct: 412 DEELQSWLRQIRDEAYVE 429


>gi|238028597|ref|YP_002912828.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia glumae BGR1]
 gi|237877791|gb|ACR30124.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia glumae BGR1]
          Length = 451

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 39/334 (11%), Positives = 103/334 (30%), Gaps = 28/334 (8%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVP-----IVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
                 F  +++     +    V       +      ++  +   +N +VIT  ++ +R+
Sbjct: 1   MKKTLRFAAIVSGLVAAMSLLSVTPAVAQALGSNGATLADEVVAVVNNDVITGRELDQRV 60

Query: 61  ALLKLQKING--------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
            L+  +            EL    + ++++E ++ Q+ ++ GI  D   V     + A  
Sbjct: 61  DLIARRLRQQKAPVPPIDELRMQVLNQMVLERIQVQKAKEDGIVVDDAMVQATLQRLAAA 120

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
             +S + + + L+ +G+  N F      + +   + + +   K    + E+ +     + 
Sbjct: 121 NNMSLDQYRARLEAEGVPWNIFVSDARTELMLSRLREKEVDSKITVSDAEVASYIASQRG 180

Query: 173 ITVREYLIRTVLFSIPDNKLQNQG-----FVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
                     +                    +K     +++           +  +    
Sbjct: 181 PNAGSQQDLRLEHIFVAAPQNAPETQIDAARKKAEGLLKQALAPGADFERLAKNNSEAKD 240

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP--YVTQKGVEYIAICDKRDLGGEIALK 285
             S G   +     L       + + +    NP       G E + + D+R   G  A  
Sbjct: 241 AKSGGDLGFKPPGSLPADVVQAVAQLRPGQVNPALIRVPDGFEIVRLVDRRPAQGTSAAS 300

Query: 286 --------AYLSAQNTPTKIEKHEAEYVKKLRSN 311
                    ++  +    K E    + +  +R+ 
Sbjct: 301 PKIVQTHVRHILLRVGEGKSEAQARQQLIDIRNK 334



 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 19/168 (11%), Positives = 57/168 (33%), Gaps = 2/168 (1%)

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
                +  + +      Q     + +          +   + +++   ++++ D      
Sbjct: 277 RVPDGFEIVRLVDRRPAQGTSAASPKIVQTHVRHILLRVGEGKSEAQARQQLIDIRNKVE 336

Query: 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEY 269
                 +    ++        G   ++   +  P+F+  +        +NP  T+ G   
Sbjct: 337 AGGDFASFARTYSQDGSASQGGDLGWISPGETVPEFERAMNSLQDGQISNPVRTEYGYHL 396

Query: 270 IAICDKRDLGGEIALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           I +  +RD  G I  +  +        K E+  A+++++LR ++ +  
Sbjct: 397 IQVLGRRDAEGSIQQQMDIARQAIGQRKAEQAYADWLRELRDSSYVQI 444


>gi|134296902|ref|YP_001120637.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           vietnamiensis G4]
 gi|134140059|gb|ABO55802.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           vietnamiensis G4]
          Length = 452

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 99/302 (32%), Gaps = 22/302 (7%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------LEKIAVQELIVE 83
             +   ++  +   +N +VIT  ++ +R+ L+  +             L    + ++++E
Sbjct: 32  GSQGAQLTDEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPAEQLRAQVLNQMVLE 91

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            ++ Q+ +  GI  D  TV     + A+  G++ + + + L+ QG+  + F      + +
Sbjct: 92  RIQVQKAKDDGIRIDDATVQSTLQRLAQANGMTLDQYRARLEAQGVPWSVFTSDARTELM 151

Query: 144 WPDVVKNDFMLKYGNLEMEIPAN----KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
              + + +   K    + E+       +    +           + +  +    +    Q
Sbjct: 152 LSKLREREVDGKITVSDAEVANYIASQRGPNASQQQDLRFQHIFIKAPTNAPQADIEAAQ 211

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN 259
           K+ +   +               +        G   +   S L P       K +    N
Sbjct: 212 KKAEALLQQATSGADFEKLARNNSEANDAKKGGDLGFKAPSTLPPDVVAAASKLRPGQVN 271

Query: 260 P--YVTQKGVEYIAICDKRDLGGEIALK--------AYLSAQNTPTKIEKHEAEYVKKLR 309
           P       G E I + D+R   G  A           ++  +    K E    + +  +R
Sbjct: 272 PTLIRVPDGFEIIRLVDRRQSQGASAAAPKIVQTHVRHILLRVGEGKSENQARQQLLDIR 331

Query: 310 SN 311
             
Sbjct: 332 KQ 333



 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/287 (10%), Positives = 90/287 (31%), Gaps = 19/287 (6%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           ++G+ IT  D ++    +  Q+     ++  +       +K            +      
Sbjct: 160 VDGK-ITVSD-AEVANYIASQRGPNASQQQDL-RFQHIFIKAPTNAPQADIEAAQKKAEA 216

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN--------------D 151
            +Q A +     +   +  +           + A  ++ PDVV                 
Sbjct: 217 LLQQATSGADFEKLARNNSEANDAKKGGDLGFKAPSTLPPDVVAAASKLRPGQVNPTLIR 276

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
               +  + +      Q       +          +   + +++   ++++ D  +    
Sbjct: 277 VPDGFEIIRLVDRRQSQGASAAAPKIVQTHVRHILLRVGEGKSENQARQQLLDIRKQVEA 336

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                     ++        G   ++   +  P+F+  +        + P  T+ G   I
Sbjct: 337 GGDFAKFARTYSQDGSASQGGDLGWISPGETVPEFERAMNNLQDGQISQPVRTEYGYHLI 396

Query: 271 AICDKRDLGGEIALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D+R+  G +  +  +        K E+  A+++++LR ++ + Y
Sbjct: 397 QVIDRREAEGSVQQQMDIARQAIGQRKAEQAYADWLRELRDSSYVQY 443


>gi|148264947|ref|YP_001231653.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           uraniireducens Rf4]
 gi|146398447|gb|ABQ27080.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           uraniireducens Rf4]
          Length = 341

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 93/288 (32%), Gaps = 16/288 (5%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKIN---------GELEKIAVQELIVETLKKQEIEKS 93
              +N  +IT  D+ + + +L  Q             + E+ A+ +LI   L  Q  +K+
Sbjct: 53  VAKVNDTIITRLDLDRAVKVLVSQNRLPQPLPPESLKQAEEAALDQLISAELLYQAGQKT 112

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
            I      V     Q+      SA++F   L    + +   K++     +  + ++ +  
Sbjct: 113 EIRDLEKQVEEKVSQNKAKF-PSADEFEKALKSVEMTEKDLKEFTRKDVVISNFIEKNIA 171

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES---RL 210
            K    E +         +   +E  ++                 +K  + AE       
Sbjct: 172 EKTKVTEADAKKFYDDNPDKFKQEPSVKASHILCGVEASATAEEKKKAKEKAEALLKKIK 231

Query: 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEY 269
                    +  ++       G   +  +  +   F+           ++   TQ G   
Sbjct: 232 AGEDFATLAKSESTCPSSKQGGDLGFFSKGQMVAPFEKAAFALKPGEVSDVVETQFGYHI 291

Query: 270 IAICDKRDLGG--EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           I + +K++ G      +K  +       KI+K   E + +L+  A I 
Sbjct: 292 IKLTEKKEGGTIKFDEVKEKIENYLKNLKIQKAIGECLVELKGKAKIE 339


>gi|225874673|ref|YP_002756132.1| peptidylprolyl cis-trans isomerase SurA, putative [Acidobacterium
           capsulatum ATCC 51196]
 gi|225793602|gb|ACO33692.1| peptidylprolyl cis-trans isomerase SurA, putative [Acidobacterium
           capsulatum ATCC 51196]
          Length = 588

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 96/296 (32%), Gaps = 14/296 (4%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL--------EKIAVQELIVETLK 86
              +  +I   ++ +VI   D  +    LK Q     +        +K  ++ LI + L 
Sbjct: 57  PGTVVEQIVARVDDQVIDTSDYERAEQDLKQQAQQQNMSQAELDREKKDLLRNLIDQQLL 116

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
             + ++ GIT +   V        +N   S       ++ QG+    FKQ +    I   
Sbjct: 117 LAKGKQLGITGEDQLVERLDAIRKQNHLDSMTALQQAVESQGLSWQDFKQQIRNNIITQT 176

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV---LFSIPDNKLQNQGFVQKRIK 203
           V++            EI     + K    R   +R     + +   +        +K+  
Sbjct: 177 VIRQKVAPTIRISPDEIQKYYDQHKKEFDRPEEVRLSEILIPTPNPDDAAQVAEAKKKAD 236

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYV 262
             E             +  ++       G      +  L P+ +N      +   T P  
Sbjct: 237 GIEAQLKAGGDFAKLAKSDSTGPTAPQGGDLGDFQKGQLAPELENATFPLKKGQFTEPIQ 296

Query: 263 TQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           T++G   + +   +D G      ++  +       K++     Y+ KLR+ + I  
Sbjct: 297 TKQGWIILEVTHHQDAGLAPMNQVETQIENAVGYNKMQPALRAYLTKLRNESYIDI 352


>gi|32034721|ref|ZP_00134852.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207884|ref|YP_001053109.1| peptidyl-prolyl cis-trans isomerase SurA [Actinobacillus
           pleuropneumoniae L20]
 gi|126096676|gb|ABN73504.1| peptidyl-prolyl cis-trans isomerase SurA [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 316

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 46/316 (14%), Positives = 106/316 (33%), Gaps = 15/316 (4%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +KL++   +L+       +S  + A+  R+   ++G  + +  + +    L  +  +   
Sbjct: 1   MKLISAKSLLVALVTAIGISQTAIAIEERVVALVDGVPVMESQVQRA---LGKKANSEAN 57

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            K A++++I + L ++ ++++G+  + + V+      A   G++       LD QGI   
Sbjct: 58  HKAALEQIIDDLLVQKAVKEAGVKVNYSKVDQVIEDIAARNGITYGQLLDALDYQGITLE 117

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE--------YLIRTVL 184
            ++Q +A Q     V              ++ A  +++                  R   
Sbjct: 118 QYRQQIAQQMAMEQVRHISIGKSIQVDPKDVHAYAKELLEKDKANGKLKNVTGVQHRVSH 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK--FASKIHDVSIGKAQYLLESDL 242
             I    + N    + ++               +  K      +     G   Y      
Sbjct: 178 ILIKTTPVLNDIQAKAKLAQIVADIKAGKTTFEEAAKANSVDYLSAADGGDLGYNFLDIY 237

Query: 243 HPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKH 300
            P F +      Q   T P+ +Q G   + +   +               Q    + ++ 
Sbjct: 238 DPAFAKAASTAKQEQITAPFKSQFGWHILKVTGTQQGDRTEDAYNQRAYEQLVDKQAQEA 297

Query: 301 EAEYVKKLRSNAIIHY 316
             ++VK LR  A + Y
Sbjct: 298 AKDWVKALRKTADVQY 313


>gi|302039584|ref|YP_003799906.1| putative peptidylprolyl isomerase [Candidatus Nitrospira defluvii]
 gi|300607648|emb|CBK43981.1| putative Peptidylprolyl isomerase [Candidatus Nitrospira defluvii]
          Length = 344

 Score =  125 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 33/302 (10%), Positives = 86/302 (28%), Gaps = 3/302 (0%)

Query: 18  TYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAV 77
                +    V I + ++  +  RI   +N ++I   ++ + +   + +       +   
Sbjct: 41  ALIFCLCLLFVLISNAEAAKLEDRIVAVVNSDLIMLSELKRDLLPEQDRLRKLYKGEDLE 100

Query: 78  QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY 137
           + L                      N       +    + E+     +     D +  + 
Sbjct: 101 RRLKTAEAMGVTKMIERKLQLQAAKNKGVDVSDQEVVQAVEEMKKQGEAIDSADPNTARS 160

Query: 138 LAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGF 197
           +  Q     VV  +        + E+    Q+ ++        +     I          
Sbjct: 161 IREQLTLMRVVDREVRGLIMVADSEMKRYYQEHQDRFAYPEEYQLSQILIKPRTPDGLSA 220

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNN 256
              R +    +  +     +   +F+        G+   + + +L P  +          
Sbjct: 221 AHGRAEALLATLKQGEPFEDLALRFSDGADASRGGRLGLVRQGELIPALEQALTSVDVGK 280

Query: 257 TTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            T    T +G+  + + DK+         +KA + +     K E     ++  L++ A I
Sbjct: 281 ITGIVETAEGLHIVRVDDKKPRQFRPFEQVKAEIQSLVFQQKTEDQYQIWMADLKNKAYI 340

Query: 315 HY 316
             
Sbjct: 341 EI 342


>gi|227821473|ref|YP_002825443.1| putative survival protein SurA, probable peptidyl-prolyl cis-trans
           isomerase protein [Sinorhizobium fredii NGR234]
 gi|227340472|gb|ACP24690.1| putative survival protein SurA, probable peptidyl-prolyl cis-trans
           isomerase protein [Sinorhizobium fredii NGR234]
          Length = 312

 Score =  125 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 85/311 (27%), Positives = 144/311 (46%), Gaps = 7/311 (2%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +   I ++     L +  ++ I S  +   +S ++  +N  VIT GDI+KR+A L+LQ+ 
Sbjct: 1   MGGKISIVRALSALAVAGVLSIASGAAVQAASGVKVIVNSTVITSGDIAKRVAFLRLQRQ 60

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
            G   + A ++L+ E LK+ EI +   +  +  V+  + + A    LS E     LD+ G
Sbjct: 61  GGGAAE-AEKQLVDEVLKRAEIARVQQSVSTQEVDAAYARFAAGNKLSTEQLGKILDQSG 119

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
           +G  HFKQY+A+Q  WP VV   +         ++     +                   
Sbjct: 120 VGIEHFKQYIAVQMSWPRVVNFRYGSASRLSGGDLVKRMMEGGGNKPVTTEYFLQQVIFV 179

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
             + +      KR  +A  SR + P      + FA+   DVSI     +L   L   ++ 
Sbjct: 180 IPESKRGAITAKRQAEANASRSQFPGCETS-KAFAANYRDVSIRSLGRVLAQQLPEDWKP 238

Query: 249 LLKKS-QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI----EKHEAE 303
           L++K+    TT   VT+KGVEY+AIC KR +  + A +    A++   K     + +  +
Sbjct: 239 LVEKAGDGTTTGTRVTEKGVEYLAICKKRQVNDDAAAEVVFRAEDIGKKKAGGEDPNSEK 298

Query: 304 YVKKLRSNAII 314
           Y+++LRS A I
Sbjct: 299 YLEELRSKAQI 309


>gi|330830997|ref|YP_004393949.1| peptidylprolyl cis-trans isomerase SurA [Aeromonas veronii B565]
 gi|328806133|gb|AEB51332.1| Peptidylprolyl cis-trans isomerase SurA [Aeromonas veronii B565]
          Length = 434

 Score =  125 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 32/310 (10%), Positives = 99/310 (31%), Gaps = 15/310 (4%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--- 70
           K L       +F  +   +  +  +  ++   +N +V+        +  +KL        
Sbjct: 5   KTLIALLTAGMFGAMSQAALAAPELMDKVLAVVNKDVVLSSQQDALVNKVKLSAQESGQS 64

Query: 71  -----ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
                 L K A+  LI E+L+ Q  E+ G+      +       A +  ++ +   + L 
Sbjct: 65  LPDDATLRKQALDRLIQESLQLQLAERQGLKISDTQLEQAIQGIAADNKMTLDQLRAQLA 124

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
           ++G+    +++ +  + +  +V +N    +    E E+    + +K    ++        
Sbjct: 125 REGMTYAQYREEVRREILMNEVRRNQVRRRINISEQEVKQVVEILKKQGQQQNEYHVGHI 184

Query: 186 SIPDNKLQNQGFVQKRIKDAE---ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
            I          +       E    +  +           ++    +  G   ++   ++
Sbjct: 185 QIALPDNPTAAQLDAAKSKIERILAALKQGADFRKLAIAESNGPKALEGGDWGWMSPQEM 244

Query: 243 HPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIE 298
                + +    + +   P  +  G+  + + D +    +        ++  + +    E
Sbjct: 245 PTLMAEAVQGAKKGDIVGPLRSGAGLHIVKVFDTKGQQQVMQTEVKARHILIKPSIILSE 304

Query: 299 KHEAEYVKKL 308
           +     +  +
Sbjct: 305 EKAKGMLDGI 314



 Score = 88.2 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/274 (11%), Positives = 84/274 (30%), Gaps = 9/274 (3%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I++ ++ + + +LK Q      E       I         +          +     Q A
Sbjct: 157 ISEQEVKQVVEILKKQGQQQN-EYHVGHIQIALPDNPTAAQLDAAKSKIERILAALKQGA 215

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
               L+  + +     +G              +   V         G L      +  K+
Sbjct: 216 DFRKLAIAESNGPKALEGGDWGWMSPQEMPTLMAEAVQGAKKGDIVGPLRSGAGLHIVKV 275

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE-----SRLRLPKDCNKLEKFASK 225
            +   ++ +++T + +       +    +++ K   +      +       +  EK++  
Sbjct: 276 FDTKGQQQVMQTEVKARHILIKPSIILSEEKAKGMLDGILHDIKSGKASFASMAEKYSED 335

Query: 226 I-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIA 283
               V  G+  +   +   P+F++++ +      + P+ T  G   + + D+R       
Sbjct: 336 PGSAVQGGELGWSDPNVYVPEFRDMVNRLQPGQISAPFRTSHGWHIVQVEDRRSQDATDK 395

Query: 284 LKAY-LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            +           +  +    ++ +LR  A I  
Sbjct: 396 AQEQRAYQLIYNRRFVEESQAWLDELRDEAYIQI 429


>gi|167854677|ref|ZP_02477457.1| bifunctional heptose 7-phosphate kinase/heptose 1-phosphate
           adenyltransferase [Haemophilus parasuis 29755]
 gi|167854214|gb|EDS25448.1| bifunctional heptose 7-phosphate kinase/heptose 1-phosphate
           adenyltransferase [Haemophilus parasuis 29755]
          Length = 312

 Score =  125 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 54/315 (17%), Positives = 111/315 (35%), Gaps = 15/315 (4%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +  T    +      + ++ S     R+  T++G  I    + +    L  +       K
Sbjct: 1   MKFTQVKSLFIAGFALFAFSSANAEERVVATVDGYPIMQSQVKQA---LGKKANTEANRK 57

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
            A++ +I + + ++ I++SGI  D   V+      A   G++       LD QGI  + +
Sbjct: 58  AALETIIDDFVVQRAIKESGIKVDYAYVDQMMEDVAAQNGITYGQLLDALDYQGISLSQY 117

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV----------REYLIRTVL 184
           +Q LA Q +   V +            ++ +  + M +              EY I  +L
Sbjct: 118 RQQLAHQLLMEQVRQQSIGNSIQVDPKDVQSLAKDMLDKAKINGTLETVSATEYRISHIL 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
                     Q   +     A+    ++  +          I  +  G   +        
Sbjct: 178 IKTTPILNDMQAKAKLLSITADIKSGKITFEEAAKINSVDYISGIDGGDLGFNFLDAYDS 237

Query: 245 QFQNL-LKKSQNNTTNPYVTQKGVEYIAICD-KRDLGGEIALKAYLSAQNTPTKIEKHEA 302
            F N+  K   +  ++P+ +Q G   + + D +R    E A       Q    +++    
Sbjct: 238 TFANIASKSKIDVISSPFKSQFGWHILKVTDTRRGDRTEDAYLQRAYEQLIDKQVQVASK 297

Query: 303 EYVKKLRSNAIIHYY 317
           +++K LRS   I Y+
Sbjct: 298 DWIKVLRSKLDIKYF 312


>gi|238786686|ref|ZP_04630487.1| Chaperone surA [Yersinia frederiksenii ATCC 33641]
 gi|238725054|gb|EEQ16693.1| Chaperone surA [Yersinia frederiksenii ATCC 33641]
          Length = 434

 Score =  125 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 107/296 (36%), Gaps = 16/296 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   +    ++ +     ++   ++  V+   D+   +  +KL            G L
Sbjct: 7   LILGLVVCANTAFAAPQEVDKVAAVVDNGVVLQSDVDGLLQSVKLNAQQAGQQVPDDGTL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K GIT     ++      A    ++ +   S L   G+  N
Sbjct: 67  RHQVLERLIMDNILLQMAKKMGITVSDEALDKAIADIAAQNRMTPDQMRSRLAADGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            +++ +  + +  +V  N+   +   L  E+ +  +++ N T  +  +      IP  + 
Sbjct: 127 TYREQIRKEMLTSEVRNNEVRRRITILPQEVESLAKQIGNQTSGDAELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            +Q  V +    A +    +    +        ++    +  G+  +    +L   F + 
Sbjct: 187 PSQQQVDQAEDLANKLVSDIKGGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAER 246

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKH 300
           L   ++ +   P  +  G   + + D R     +        ++  + +P   ++ 
Sbjct: 247 LQSANKGDVVGPIRSGVGFHILKVNDIRGADKTVSVTEIHARHILLKPSPVMTDEQ 302



 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/142 (11%), Positives = 45/142 (31%), Gaps = 3/142 (2%)

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQY 236
            +    +   P   + ++    K    A + +          ++ +      +  G   +
Sbjct: 284 EIHARHILLKPSPVMTDEQARAKLSAAAADIKSGKSSFATIAKEISQDPGSAMQGGDLGW 343

Query: 237 LLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTP 294
                  P F++ + K  +   + P  +  G   I + D R +   + A K         
Sbjct: 344 ASPDIYDPAFRDAVMKLQKGEISAPVHSSFGWHLIQVIDNRQVDKTDAAQKDRAYRMLFS 403

Query: 295 TKIEKHEAEYVKKLRSNAIIHY 316
            K  +    ++++ R+ A +  
Sbjct: 404 RKFAEEAQTWMQEQRAAAYVKI 425


>gi|241203946|ref|YP_002975042.1| peptidyl-prolyl cis-trans isomerase protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240857836|gb|ACS55503.1| putative peptidyl-prolyl cis-trans isomerase protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 314

 Score =  125 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 139/290 (47%), Gaps = 10/290 (3%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSG 94
           S   +S ++  +NG  IT GD++KR A L+LQ    +  K A ++LI E LK+QE+ +  
Sbjct: 26  SALAASEVKAVVNGTAITSGDVAKRQAFLRLQHTKADA-KAAEEQLIDEALKRQEVTRVH 84

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
           ++     V+  F + +    LS E  S  LD+ G+G +HFK ++A+Q  WP VV   +  
Sbjct: 85  MSVSQQDVDASFARFSSGNKLSPEQMSQILDRAGVGVDHFKGFIAVQMSWPRVVNARYGS 144

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
                  ++ +   +                     + +      KR  +AE SR + P 
Sbjct: 145 TSRLSNYDLVSRMMQNNKQKPVTTEYMLQQVIFVIPQAKRGAITGKRKGEAEASRSKFPG 204

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICD 274
             ++ + FA+ + DVS+     +L  ++ P ++ L+++++ NTT   VT KGVEY+AIC 
Sbjct: 205 C-DQAKVFAATMRDVSVRDLGRMLAPEIPPDWKPLVEQAKGNTTGTRVTDKGVEYLAICS 263

Query: 275 KRDLGGEIALKAYLSAQNTPTKI--------EKHEAEYVKKLRSNAIIHY 316
           +R +  + A +     ++              ++  +Y+ +LR  A I Y
Sbjct: 264 QRQVSDDQAAEMVFRQEDLDKSKGGKDASPENENSKKYLDELRKKAQIAY 313


>gi|190149693|ref|YP_001968218.1| peptidyl-prolyl cis-trans isomerase SurA [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303252643|ref|ZP_07338806.1| survival SurA-like protein [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|307247402|ref|ZP_07529449.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307256445|ref|ZP_07538227.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307263001|ref|ZP_07544623.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189914824|gb|ACE61076.1| peptidyl-prolyl cis-trans isomerase SurA [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302648611|gb|EFL78804.1| survival SurA-like protein [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|306856099|gb|EFM88255.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306865075|gb|EFM96976.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306871627|gb|EFN03349.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 316

 Score =  125 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 46/316 (14%), Positives = 105/316 (33%), Gaps = 15/316 (4%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +KL++   +L+       +S  + A+  R+   ++G  + +  + +    L  +  +   
Sbjct: 1   MKLISAKSLLVALVTAIGISQTAIAIEERVVALVDGVPVMESQVQRA---LGKKANSEAN 57

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            K A++++I + L ++ ++++G+  +   V+      A   G++       LD QGI   
Sbjct: 58  HKAALEQIIDDLLVQKAVKEAGVKVNYAKVDQVIEDIAARNGITYGQLLDALDYQGITLE 117

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE--------YLIRTVL 184
            ++Q +A Q     V              ++ A  +++                  R   
Sbjct: 118 QYRQQIAQQMAMEQVRHISIGKSIQVDPKDVHAYAKELLEKDKANGKLKNVTGVQHRVSH 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK--FASKIHDVSIGKAQYLLESDL 242
             I    + N    + ++               +  K      +     G   Y      
Sbjct: 178 ILIKTTPVLNDIQAKAKLAQIVADIKAGKTTFEEAAKANSVDYLSAADGGDLGYNFLDIY 237

Query: 243 HPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKH 300
            P F +      Q   T P+ +Q G   + +   +               Q    + ++ 
Sbjct: 238 DPAFAKAASTAKQEQITAPFKSQFGWHILKVTGTQQGDRTEDAYNQRAYEQLVDKQAQEA 297

Query: 301 EAEYVKKLRSNAIIHY 316
             ++VK LR  A + Y
Sbjct: 298 AKDWVKALRKTADVQY 313


>gi|170691413|ref|ZP_02882578.1| SurA domain [Burkholderia graminis C4D1M]
 gi|170143618|gb|EDT11781.1| SurA  domain [Burkholderia graminis C4D1M]
          Length = 453

 Score =  125 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 100/304 (32%), Gaps = 22/304 (7%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------LEKIAVQELI 81
            ++         I   +N  VIT  ++ +R++L+  +             L +  + +++
Sbjct: 32  ALAGNRGQTVDTIAAVVNNGVITRRELEERVSLITRRLNQQNAPIPPADQLRQQVLNQMV 91

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
           +E ++ Q+ ++ GI  D   V     + A+   LS + + + ++ QG+    F      +
Sbjct: 92  LERIQLQKAKEDGINIDDAAVQKTLERLAQANNLSLDVYRARIEAQGVPWTTFTSDARTE 151

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPAN----KQKMKNITVREYLIRTVLFSIPDNKLQNQGF 197
                + + +   K    + E+       +      T   +L   +L +  +    +   
Sbjct: 152 LTLSRLREKEVDSKVTVSDAEVANYIASQRGPNAGATSDLHLEHILLKAPLNAPQPDIEA 211

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT 257
            QK+ +                +  +        G   Y   S L P+F       +   
Sbjct: 212 AQKKAEALLAEAKGGANFEKLAKSNSQAPDASKGGDMGYAAPSKLPPEFVKAASALRPGQ 271

Query: 258 TNP--YVTQKGVEYIAICDKRDLGGE--------IALKAYLSAQNTPTKIEKHEAEYVKK 307
            NP    T  G E + + D+R   G              ++  +      E    + + +
Sbjct: 272 VNPEVIRTSDGFEVVRLVDRRAGQGTSSDAPKLVQTHVRHILLRVGDGMSEPQARQKLLE 331

Query: 308 LRSN 311
           +R  
Sbjct: 332 IRKE 335



 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 16/145 (11%), Positives = 50/145 (34%), Gaps = 2/145 (1%)

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
              +          +      ++   ++++ +  +              ++        G
Sbjct: 300 DAPKLVQTHVRHILLRVGDGMSEPQARQKLLEIRKEIAAGGDFSKFASTYSQDGSSSQGG 359

Query: 233 KAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK-AYLSA 290
              ++   +  P+F+  +        ++P  ++ G   I + ++R+  G IA +      
Sbjct: 360 DLGWISPGETVPEFERAMNSLQDGQISDPVRSEYGYHLIQVLERREAQGSIAQQMDLARQ 419

Query: 291 QNTPTKIEKHEAEYVKKLRSNAIIH 315
                K E+  A+++++LR  A + 
Sbjct: 420 AIGQRKAEQAYADWLRELRDTAYVE 444


>gi|258405810|ref|YP_003198552.1| SurA domain-containing protein [Desulfohalobium retbaense DSM 5692]
 gi|257798037|gb|ACV68974.1| SurA domain protein [Desulfohalobium retbaense DSM 5692]
          Length = 311

 Score =  125 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/304 (16%), Positives = 111/304 (36%), Gaps = 22/304 (7%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVITDGDISKR----IALLKLQKIN-------GELEKI 75
               V      +  RI   +NGE+IT  +++++    +   + Q+          E++K 
Sbjct: 14  FCSAVPATGEQVVDRIVAVVNGEIITLFELNQKADPVVERFRSQQPGSLTEDRIEEIKKR 73

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +Q ++   L +QE E+  +  +   V     +     G   E     L  +G+  + F+
Sbjct: 74  VLQTMVDNMLLRQEAERLEMEIEDAEVQDRIEEMKTQRGWDDERLDQMLANEGLDRSSFE 133

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           + +    +   +V      K      EI    +  +    +E  +   L ++P       
Sbjct: 134 KNIREDLMRRRLVGAMVRRKVVVTNEEIQTFYKDNQEQFAQEKKVDLRLLAVPS------ 187

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQ 254
             V K  +  +             ++F+        G   ++  +DL PQ++ +    S 
Sbjct: 188 --VDKAKQLRQRITDGDLDFAQAAKQFSQGPAAGQGGDLGWVKWADLAPQWKEVLRSTSP 245

Query: 255 NNTTNPYVTQKGVEYIAICD--KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
            + T P+  Q     + + D  K  +    A++  ++      K EK    Y+++LR  A
Sbjct: 246 GSMTEPFSLQGQTAILYLEDMQKGQVQPLSAVRDRIADTLRGPKFEKQLETYLQRLRDKA 305

Query: 313 IIHY 316
           ++  
Sbjct: 306 VVDI 309


>gi|254283287|ref|ZP_04958255.1| chaperone SurA [gamma proteobacterium NOR51-B]
 gi|219679490|gb|EED35839.1| chaperone SurA [gamma proteobacterium NOR51-B]
          Length = 435

 Score =  125 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/323 (14%), Positives = 108/323 (33%), Gaps = 12/323 (3%)

Query: 1   MTSKVFTSLSD-FIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKR 59
           MT+   T LS   I  + T  + +        +     +  +I   ++ ++I   ++ +R
Sbjct: 1   MTATNITFLSRALITTVLTSGMFLNAITAHAQAGDQVQILEQIVAIVDDDIILASELRER 60

Query: 60  IALLKLQKI--------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
           +  LK+              L +  +  LI+E+++ Q  E+ GI      ++    + A 
Sbjct: 61  LDTLKVNIERQGAEMPAEDILVRETLDRLILESIQLQMGERYGIRIPDTQLDEALRRVAS 120

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
           N GL+   F   L+ +G      ++ +  +     V + +        + EI    +   
Sbjct: 121 NNGLTLAQFRGALEAEGRSYAEMRESVRKEMTIQRVQQGNVSRNINISDAEIDNYLETEA 180

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVS 230
              + E   R     IP N   ++     +    + +   +          + ++ +   
Sbjct: 181 GQELTEPQYRVFQALIPVNSTDSEAERASKEAFVDSALSAILDGQAFESAVSVTQPYAFQ 240

Query: 231 IGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK--RDLGGEIALKAYL 288
            G   +   SD+   F  ++       T    +  G   + + D   R+         ++
Sbjct: 241 GGDLGWRKLSDIPSMFTAIVPTLDRGETGKVESGSGFHLVHVADVRGRERVIAQTKVRHI 300

Query: 289 SAQNTPTKIEKHEAEYVKKLRSN 311
             + +  + E    +    LR  
Sbjct: 301 LVKPSEVRTEAETEQLAADLRQR 323



 Score = 94.4 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/269 (9%), Positives = 85/269 (31%), Gaps = 4/269 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I+D +I   +     Q++     +   Q LI       E E++      ++     +   
Sbjct: 167 ISDAEIDNYLETEAGQELTEPQYR-VFQALIPVNSTDSEAERASKEAFVDSALSAILDGQ 225

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                 +           +G        ++ +     +      K  +       +   +
Sbjct: 226 AFESAVSVTQPYAFQGGDLGWRKLSDIPSMFTAIVPTLDRGETGKVESGSGFHLVHVADV 285

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDV 229
           +         +     +  ++++ +   ++   D  +  L         ++++  I    
Sbjct: 286 RGRERVIAQTKVRHILVKPSEVRTEAETEQLAADLRQRLLDGADFAELAKEYSEDIGSAQ 345

Query: 230 SIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAY 287
             G   +     + P+F+  + +   ++   P  +Q G   + +  +RD    +   +  
Sbjct: 346 EGGDLGWTSAGQMVPEFEQAMAETEVDDIAPPVRSQFGWHVLEVTGRRDKDVSDEMRRNQ 405

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           ++      K ++    +++K+R+ A +  
Sbjct: 406 VANYLHDAKYQEELDAWLRKIRTEAFVDI 434


>gi|149377958|ref|ZP_01895684.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter algicola
           DG893]
 gi|149357732|gb|EDM46228.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter algicola
           DG893]
          Length = 429

 Score =  125 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/309 (11%), Positives = 102/309 (33%), Gaps = 16/309 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGEL 72
           + ++  +V         +  ++   +N +VI   ++  RI  +  +             L
Sbjct: 2   LALMVVMVSATVQADRKLLDQVVAVVNDDVILQSELEARINTITGRLRAQGTGLPPRDIL 61

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           E+  +++LI E+++ Q  +++G+    N +N      A+   ++   F   L ++G+   
Sbjct: 62  EERVLEQLISESIQLQMADRAGMRISDNELNETLASIAQRNNMTLAQFEQQLVQEGVTYR 121

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN---KQKMKNITVREYLIRTVLFSIPD 189
             ++ +  + I   V +     +    + E+                  L   ++     
Sbjct: 122 EAREQIRNEMITSRVQQRQVGNRVRVTDREVENYLAAMAGQGRSNAEYELAHILIEVNDF 181

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
           N  +     +++++   E         +     +   + +  G   +  E+ L     ++
Sbjct: 182 NDEEEVSAAREKVEQLREEIAEGRDFRSVAVAESDASNALDGGNMGWRAENQLPSLVADV 241

Query: 250 LKK-SQNNTTNPYVTQKGVEYIAICDKRDLG----GEIALKAYLSAQNTPTKIEKHEAEY 304
           +        +       G   + + D+R        E +   ++  + + T  E      
Sbjct: 242 VPDLETGTVSPVLRNSSGFHLVMVMDRRGGDKAQFIEQSKVRHILVRTSETVSEAQAEAT 301

Query: 305 VKKLRSNAI 313
           ++ L     
Sbjct: 302 IRDLYQQID 310



 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/280 (9%), Positives = 84/280 (30%), Gaps = 10/280 (3%)

Query: 46  INGEV-ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           +   V +TD ++   +A +  Q  +    ++A   LI       E E S        +  
Sbjct: 141 VGNRVRVTDREVENYLAAMAGQGRSNAEYELA-HILIEVNDFNDEEEVSAAREKVEQLRE 199

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML-----KYGNL 159
              +      ++  +  +     G       +      +   V   +        +  + 
Sbjct: 200 EIAEGRDFRSVAVAESDASNALDGGNMGWRAENQLPSLVADVVPDLETGTVSPVLRNSSG 259

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
              +    ++  +        +     +  ++  ++   +  I+D  +            
Sbjct: 260 FHLVMVMDRRGGDKAQFIEQSKVRHILVRTSETVSEAQAEATIRDLYQQIDNGADFAVIA 319

Query: 220 EKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRD 277
            + +         G   ++    + P+F+  + ++       P+ +Q G   + + D+R 
Sbjct: 320 REHSDDPVSGSDGGNLGWVSPGQMVPEFEQAMMEADVGELKGPFRSQFGWHILQVQDRRQ 379

Query: 278 LGGEIALKA-YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                 ++           K +     +++++R  A I +
Sbjct: 380 QDISGDVRESEARQAIYRRKFDTELQNWLREIRDEAFIEF 419


>gi|322514871|ref|ZP_08067889.1| peptidyl-prolyl cis-trans isomerase [Actinobacillus ureae ATCC
           25976]
 gi|322119175|gb|EFX91320.1| peptidyl-prolyl cis-trans isomerase [Actinobacillus ureae ATCC
           25976]
          Length = 314

 Score =  125 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 107/316 (33%), Gaps = 16/316 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +KL++   +L+       +S  + A   R+  T++G  + + D+ +    L  +      
Sbjct: 1   MKLISAKSLLLTLVAAVGISQSAMAWEERVVATVDGVPVMESDVQR----LLGKNATAAQ 56

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            K AV++ I + L ++ ++++G+  +   V+    Q A   G++       LD QGI  N
Sbjct: 57  HKSAVEQAIDDVLIQKAVKEAGVKVNYAHVDQAIEQIAARNGITYGQLLDALDYQGITLN 116

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV--------REYLIRTVL 184
            ++Q +A Q     V              ++ A  Q++                  R   
Sbjct: 117 QYRQQIAQQMAMEQVRNISIGKSIQVQPQDVQARAQELLAQDKAIGKLKTVTGNQYRISH 176

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF--ASKIHDVSIGKAQYLLESDL 242
             +    + N    + ++               +  K      +     G   Y      
Sbjct: 177 ILLKTTPVLNDVQAKAKLTQITADINAGKTTFEQAAKLNSVDYVSAADGGDLGYNFLDIY 236

Query: 243 HPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKH 300
            P F +      Q+  T P+ +Q G   + +   +               Q    + ++ 
Sbjct: 237 DPAFAKAASMAKQDQITAPFKSQFGWHILKVTGSQQGDRTEDAYHQRAYEQLVDKQAQEA 296

Query: 301 EAEYVKKLRSNAIIHY 316
             ++VK LR  A + Y
Sbjct: 297 SRDWVKALRKTANVQY 312


>gi|303249762|ref|ZP_07335966.1| survival SurA-like protein [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|307245230|ref|ZP_07527321.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307251950|ref|ZP_07533851.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307254177|ref|ZP_07536022.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258641|ref|ZP_07540376.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307260875|ref|ZP_07542561.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|302651329|gb|EFL81481.1| survival SurA-like protein [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306853874|gb|EFM86088.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306860642|gb|EFM92654.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306862877|gb|EFM94826.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867298|gb|EFM99151.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306869442|gb|EFN01233.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 316

 Score =  125 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/316 (14%), Positives = 105/316 (33%), Gaps = 15/316 (4%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +KL++   +L+       +S  + A+  R+   ++G  + +  + +    L  +  +   
Sbjct: 1   MKLISAKSLLVALVTAIGISQTAIAIEERVVALVDGVPVMESQVQRA---LGKKANSEAN 57

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            K A++++I + L ++ ++++G+  +   V+      A   G++       LD QGI   
Sbjct: 58  HKAALEQIIDDLLVQKAVKEAGVKVNYAKVDQVIEDIAARNGITYGQLLDALDYQGITLE 117

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE--------YLIRTVL 184
            ++Q +A Q     V              ++ A  +++                  R   
Sbjct: 118 QYRQQIAQQMAMEQVRHISIGKSIQVDPKDVHAYAKELLEKDKANGKLKNVTGVQHRVSH 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK--FASKIHDVSIGKAQYLLESDL 242
             I    + N    + ++               +  K      +     G   Y      
Sbjct: 178 ILIKTTPVLNDIQAKAKLAQIVADIKAGKTTFEEAAKANSVDYLSAADGGDLGYNFLDIY 237

Query: 243 HPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKH 300
            P F +      Q   T P+ +Q G   + +   +               Q    + ++ 
Sbjct: 238 DPAFAKAASTAKQEQITAPFKSQFGWHILKVTGTQQGDRTEDAYNQRAYEQLVDKQAQEA 297

Query: 301 EAEYVKKLRSNAIIHY 316
             ++VK LR  A + Y
Sbjct: 298 AKDWVKALRKTANVQY 313


>gi|322421262|ref|YP_004200485.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
 gi|320127649|gb|ADW15209.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
          Length = 342

 Score =  125 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 100/286 (34%), Gaps = 16/286 (5%)

Query: 45  TINGEVITDGDISKRIALLKLQKINGE---------LEKIAVQELIVETLKKQEIEKSGI 95
            +NG+VIT  ++ + +  L  QK   +         ++K A+++L+   L  Q  +K+ I
Sbjct: 50  KVNGKVITRAEVDRAVKALLDQKQLRQPVALEELRAVKKEAMEQLVSSELLYQAAQKTDI 109

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
                 V     +       S E F+  + + G+     +Q +  +    D ++  F  +
Sbjct: 110 GDVEQKVAQVIARDRARY-PSDEAFARSVKEAGLTLPMLQQLIRKEMAVSDFIETMFGAR 168

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
               E E  +  +  ++       +R     +           ++  + AE    R+ + 
Sbjct: 169 INVGEDEARSFYEANRDRFKTGSSVRASQILVMVPGPSQDRDRERARERAEILLHRVKEG 228

Query: 216 CNK---LEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
            N     +  +        G   +  +  L P  +  +        ++   T  G   + 
Sbjct: 229 ENFGILAQSHSDCPSKARGGDLGFFNKGKLDPGLEQAVFALKPGEISDIVQTSFGFHILK 288

Query: 272 ICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           + +KR          +  + +     K+ +  AEYV KLR  A + 
Sbjct: 289 LTEKRGPRLETYEEARPEIYSYLKREKMLRLVAEYVAKLRGKAKVE 334


>gi|172061669|ref|YP_001809321.1| SurA domain-containing protein [Burkholderia ambifaria MC40-6]
 gi|171994186|gb|ACB65105.1| SurA domain protein [Burkholderia ambifaria MC40-6]
          Length = 452

 Score =  125 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/299 (13%), Positives = 99/299 (33%), Gaps = 22/299 (7%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------LEKIAVQELIVETLK 86
              ++  +   +N +VIT  ++ +R+ L+  +             L    + ++++E ++
Sbjct: 35  GAQLADEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPADQLRAQVLNQMVLERIQ 94

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
            Q+ +  GI  D  TV     + A+  G++ E + + L+ QG+  + F      + +   
Sbjct: 95  VQKAKDDGIRIDDATVQSTLQRLAQANGMTLEQYRARLEAQGVPWSVFTSDARTELMLSK 154

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMK----NITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           + + +   K    + E+       +    +           + +  +         QK+ 
Sbjct: 155 LREREVDGKITVSDAEVVNYIASQRGPSASQQQDLRFQHIFIKAPTNAPQAEIEVAQKKA 214

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP-- 260
           +   +            +  +        G   +     L  +  +   K +    NP  
Sbjct: 215 EALLQQATSGADFEKLAKNNSEANDAKKGGDLGFKAPGALPAEVVDAASKLRPGQVNPTL 274

Query: 261 YVTQKGVEYIAICDKRDLGGEIALK--------AYLSAQNTPTKIEKHEAEYVKKLRSN 311
                G E + + D+R   G  A           ++  +    K E    + ++ +R  
Sbjct: 275 IRVPDGFEIVRLVDRRQSQGTSAAAPKIVQTHVRHILLRVGEGKSEGQARQQLQDIRRQ 333



 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/287 (10%), Positives = 91/287 (31%), Gaps = 19/287 (6%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           ++G+ IT  D ++ +  +  Q+     ++  +       +K            +      
Sbjct: 160 VDGK-ITVSD-AEVVNYIASQRGPSASQQQDL-RFQHIFIKAPTNAPQAEIEVAQKKAEA 216

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN--------------D 151
            +Q A +     +   +  +           + A  ++  +VV                 
Sbjct: 217 LLQQATSGADFEKLAKNNSEANDAKKGGDLGFKAPGALPAEVVDAASKLRPGQVNPTLIR 276

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
               +  + +      Q       +          +   + +++G  +++++D       
Sbjct: 277 VPDGFEIVRLVDRRQSQGTSAAAPKIVQTHVRHILLRVGEGKSEGQARQQLQDIRRQVEA 336

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                     ++        G   ++   +  P+F+  +        + P  T+ G   I
Sbjct: 337 GGDFAKFARTYSQDGSASQGGDLGWISPGETVPEFERAMNNLQDGQISQPVRTEYGYHLI 396

Query: 271 AICDKRDLGGEIALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D+R+  G +  +  +        K E+  A+++++LR ++ + Y
Sbjct: 397 QVIDRRESEGSVQQQMDIARQAIGQRKAEQAYADWLRELRDSSYVQY 443


>gi|165975861|ref|YP_001651454.1| survival SurA-like protein [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|165875962|gb|ABY69010.1| survival SurA-like protein [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
          Length = 316

 Score =  125 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/316 (14%), Positives = 105/316 (33%), Gaps = 15/316 (4%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +KL++   +L+       +S  + A+  R+   ++G  + +  + +    L  +  +   
Sbjct: 1   MKLISAKSLLVALVTAIGISQTAIAIEERVVALVDGVPVMESQVQRA---LGKKANSEAN 57

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            K A++++I + L ++ ++++GI  +   V+      A   G++       LD QGI   
Sbjct: 58  HKAALEQIIDDLLVQKAVKEAGIKVNYAKVDQVIEDIAARNGITYGQLLDALDYQGITLE 117

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE--------YLIRTVL 184
            ++Q +A Q     V              ++ A  +++                  R   
Sbjct: 118 QYRQQIAQQMAMEQVRHISIGKSIQVDPKDVHAYAKELLEKDKANGKLKNVTGVQHRVSH 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK--FASKIHDVSIGKAQYLLESDL 242
             I    + N    + ++               +  K      +     G   Y      
Sbjct: 178 ILIKTTPVLNDIQAKAKLAQIVADIKAGKTTFEEAAKANSVDYLSAADGGDLGYNFLDIY 237

Query: 243 HPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKH 300
            P F +      Q   T P+ +Q G   + +   +               Q    + ++ 
Sbjct: 238 DPAFAKAASTAKQEQITAPFKSQFGWHILKVTGTQQGDRTEDAYNQRAYEQLVDKQAQEA 297

Query: 301 EAEYVKKLRSNAIIHY 316
             ++VK LR  A + Y
Sbjct: 298 AKDWVKALRKTADVQY 313


>gi|222056577|ref|YP_002538939.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
           FRC-32]
 gi|221565866|gb|ACM21838.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
           FRC-32]
          Length = 340

 Score =  125 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 96/288 (33%), Gaps = 16/288 (5%)

Query: 43  RTTINGEVITDGDISKRIALLKLQK---------INGELEKIAVQELIVETLKKQEIEKS 93
              ING +IT  ++ + + +L  Q             + E+ A+ +LI   L  Q  +K+
Sbjct: 52  VAKINGTIITRKELDRAVKVLVAQNRLPQALPPEQQKQAEEAALDQLISAELMYQAGQKT 111

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
            I      +      +      + E+F   L    + +   K++     +    ++ + +
Sbjct: 112 EIKDIDKQIEEKIALNRAKF-PNPEEFDKALKSVEMSEKDLKEFTRKDIVITAFIEKNII 170

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR-- 211
                 E +             ++  IR     I  +    +   +K  + AE    +  
Sbjct: 171 SNINVAEADAKKFYDDNTEKFKQDESIRASHILIGVDAKAGEEDKKKAREKAEGILKKIK 230

Query: 212 -LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEY 269
                    +  ++       G      +  +   F+N          ++   TQ G   
Sbjct: 231 AGEDFATLAKAESTCPSSKQGGDLGTFPKGQMVAPFENAAFALKPGEVSDVVETQFGYHI 290

Query: 270 IAICDKRDLGG--EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           I + +K++ G      +K  +       KI+K   +Y+++L+S A   
Sbjct: 291 IKLAEKKEAGMVKFDEVKTKIVDYLKSQKIQKGVGDYLEELKSKAKTE 338


>gi|134093645|ref|YP_001098720.1| periplasmic peptidyl-prolyl cis-trans isomerase (PPIase), involved
           in maturation of outer membrane proteins [Herminiimonas
           arsenicoxydans]
 gi|133737548|emb|CAL60591.1| Chaperone SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA)
           (PPIase SurA) (Rotamase SurA) [Herminiimonas
           arsenicoxydans]
          Length = 469

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/311 (12%), Positives = 101/311 (32%), Gaps = 28/311 (9%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--------ELEKIAVQEL 80
              S     ++  I   +N EVIT  +  +R+ +++ +            +L++  ++ +
Sbjct: 43  ASTSRLQPRLADAILVVVNNEVITRYEFIERLKVIENRLKGQGGQMPPMEQLQRQLLERM 102

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           IVE  + Q+ ++SGI  D   ++    + A    L+  +F   L++ G+    F++ +  
Sbjct: 103 IVERAQLQQAKESGIKVDDAMLDRAVARIADQNQLTMPEFRKRLEQDGMVYFQFREEIRS 162

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI----RTVLFSIPDNKLQNQG 196
           + I   + + +   K    + E+ A   +               + ++    +   Q   
Sbjct: 163 EMILQRLREREVDNKIQVSDAEVDAYMAEHSGTNANAPQELNLGQILIRVPENATPQQLA 222

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +KR ++                 ++     ++ G+  +  +  L   F        Q 
Sbjct: 223 DSRKRAEEVLAQLNAGGDFAKLAAAYSDGTDGLTGGELGWRTQDRLPQLFVDATASLQQG 282

Query: 256 NTTNPYVTQKGVEYIAICDKRDL---------------GGEIALKAYLSAQNTPTKIEKH 300
                  +  G   + +  KR                   +    +++  +         
Sbjct: 283 QIAPLVKSGNGFHILKVLGKRTQSVLRAAPGANPAAANTVKQTHASHILIKVNQVVSAAD 342

Query: 301 EAEYVKKLRSN 311
               + +L+  
Sbjct: 343 ARRKLTELKQR 353



 Score = 95.9 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 13/139 (9%), Positives = 45/139 (32%), Gaps = 2/139 (1%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
             + +    +  +      +K  +  +    +           ++       G   ++  
Sbjct: 326 HASHILIKVNQVVSAADARRKLTELKQRLDNKAATFEELARLHSNDFSASKGGDLGWIYP 385

Query: 240 SDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-YLSAQNTPTKI 297
            D  P+F+  +        + P  +  G   I + +++        +   +       K+
Sbjct: 386 GDTVPEFERAMDALPVGEVSEPIESPFGYHLILVKERKSDDVSQERQRLVVRQALRAQKV 445

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           E+   ++++++R  A + Y
Sbjct: 446 EEATQDWLRQVRDRAYVEY 464


>gi|171317315|ref|ZP_02906511.1| SurA domain [Burkholderia ambifaria MEX-5]
 gi|171097514|gb|EDT42352.1| SurA domain [Burkholderia ambifaria MEX-5]
          Length = 452

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/299 (13%), Positives = 99/299 (33%), Gaps = 22/299 (7%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------LEKIAVQELIVETLK 86
              ++  +   +N +VIT  ++ +R+ L+  +             L    + ++++E ++
Sbjct: 35  GAQLADEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPADQLRAQVLNQMVLERIQ 94

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
            Q+ +  GI  D  TV     + A+  G++ E + + L+ QG+  + F      + +   
Sbjct: 95  VQKAKDDGIRIDDATVQSTLQRLAQANGMTLEQYRARLEAQGVPWSVFTSDARTELMLSK 154

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMK----NITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           + + +   K    + E+       +    +           + +  +         QK+ 
Sbjct: 155 LREREVDGKITVSDAEVVNYIASQRGPSASQQQDLRFQHIFIKAPTNAPQAEIEVAQKKA 214

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP-- 260
           +   +            +  +        G   +     L  +  +   K +    NP  
Sbjct: 215 EALLQQATSGADFEKLAKNNSEANDAKKGGDLGFKAPGALPAEVVDAASKLRPGQVNPTL 274

Query: 261 YVTQKGVEYIAICDKRDLGGEIALK--------AYLSAQNTPTKIEKHEAEYVKKLRSN 311
                G E + + D+R   G  A           ++  +    K E    + ++ +R  
Sbjct: 275 IRVPDGFEIVRLVDRRQSQGTSAAAPKIVQTHVRHILLRVGEGKSEGQARQQLQDIRRQ 333



 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/287 (10%), Positives = 91/287 (31%), Gaps = 19/287 (6%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           ++G+ IT  D ++ +  +  Q+     ++  +       +K            +      
Sbjct: 160 VDGK-ITVSD-AEVVNYIASQRGPSASQQQDL-RFQHIFIKAPTNAPQAEIEVAQKKAEA 216

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN--------------D 151
            +Q A +     +   +  +           + A  ++  +VV                 
Sbjct: 217 LLQQATSGADFEKLAKNNSEANDAKKGGDLGFKAPGALPAEVVDAASKLRPGQVNPTLIR 276

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
               +  + +      Q       +          +   + +++G  +++++D       
Sbjct: 277 VPDGFEIVRLVDRRQSQGTSAAAPKIVQTHVRHILLRVGEGKSEGQARQQLQDIRRQVEA 336

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                     ++        G   ++   +  P+F+  +        + P  T+ G   I
Sbjct: 337 GGDFAKFARTYSQDGSASQGGDLGWISPGETVPEFERAMNNLQDGQISQPVRTEYGYHLI 396

Query: 271 AICDKRDLGGEIALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D+R+  G +  +  +        K E+  A+++++LR ++ + Y
Sbjct: 397 QVIDRREAEGSVQQQMDIARQAIGQRKAEQAYADWLRELRDSSYVQY 443


>gi|293392898|ref|ZP_06637215.1| peptidylprolyl cis-trans isomerase SurA [Serratia odorifera DSM
           4582]
 gi|291424432|gb|EFE97644.1| peptidylprolyl cis-trans isomerase SurA [Serratia odorifera DSM
           4582]
          Length = 433

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/303 (11%), Positives = 106/303 (34%), Gaps = 16/303 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   +    ++ +     ++   ++  V+ + D++  +  +KL              L
Sbjct: 7   LILGLVVCANAAFAAPQEVDKVAAVVDNGVVLESDVNGLLQSVKLNAQQAGQQLPDDKTL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ ++ Q  +K GI      ++      A    +S +   S L  +G+  N
Sbjct: 67  RHQILERLIMDNIQLQMAKKMGINVTDADLDKAIGNIAAQNRMSIDQLRSRLAYEGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + +  +V  N+   +   L  E+ A  +++      +  +      IP  + 
Sbjct: 127 TYRSQIRKEMLITEVRNNEVRRRVTILPQEVDALAKQVGAQNGSDTEMNISHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            +Q  V +    A+     +    +       +++    +  G   +    ++   F + 
Sbjct: 187 PSQQQVDEAETLAKRLIGEINSGADFGKLAITYSADSQALKGGNMGWGKLQEIPTLFAER 246

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDL----GGEIALKAYLSAQNTPTKIEKHEAEY 304
           L+   + +   P  +  G   + + D R              ++  + +    +      
Sbjct: 247 LVSAKKGDVVGPIRSGVGFHILKVNDLRGASQSISVTEVHARHILLKPSVVMTDDQARAK 306

Query: 305 VKK 307
           +++
Sbjct: 307 LEE 309



 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 84/285 (29%), Gaps = 17/285 (5%)

Query: 47  NGEV-----ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           N EV     I   ++      +  Q  +     I+   LI       + +       +  
Sbjct: 143 NNEVRRRVTILPQEVDALAKQVGAQNGSDTEMNIS-HILIPLPENPSQQQVDEAETLAKR 201

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-------FML 154
           +       A    L+    +     +G      K           +V             
Sbjct: 202 LIGEINSGADFGKLAITYSADSQALKGGNMGWGKLQEIPTLFAERLVSAKKGDVVGPIRS 261

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
             G   +++   +   ++I+V E   R +L         +Q    K  + A   +    K
Sbjct: 262 GVGFHILKVNDLRGASQSISVTEVHARHILLKPSVVMTDDQA-RAKLEEVAAAVKSGKAK 320

Query: 215 DCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAI 272
             ++ ++ +      +  G   +       P F++ L K  +   + P  +  G   I +
Sbjct: 321 FADEAKQLSQDPGSALQGGDLGWASPDIYDPAFRDALLKLQKGEVSQPVHSAFGWHLIQL 380

Query: 273 CDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            D R +   + A K          K  +    ++++ R+ A +  
Sbjct: 381 LDTRQVDKTDAAQKERAYRMLFNRKFAEEAQTWMQEQRAAAYVKI 425


>gi|115352813|ref|YP_774652.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria AMMD]
 gi|115282801|gb|ABI88318.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria AMMD]
          Length = 452

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/299 (13%), Positives = 98/299 (32%), Gaps = 22/299 (7%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------LEKIAVQELIVETLK 86
              ++  +   +N +VIT  ++ +R+ L+  +             L    + ++++E ++
Sbjct: 35  GAQLADEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPADQLRAQVLNQMVLERIQ 94

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
            Q+ +  GI  D  TV     + A+  G++ E + + L+ QG+  + F      + +   
Sbjct: 95  VQKAKDDGIRIDDATVQSTLQRLAQANGMTLEQYRARLEAQGVPWSVFTSDARTELMLSK 154

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMK----NITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           + + +   K    + E+       +                + +  +         QK+ 
Sbjct: 155 LREREVDGKITVSDAEVVNYIASQRGPSAAQQQDLRFQHIFIKAPTNAPQAEIEVAQKKA 214

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP-- 260
           +   +            +  +        G   +     L  +  +   K +    NP  
Sbjct: 215 EALLQQATSGADFEKLAKNNSEANDAKKGGDLGFKAPGALPAEVVDAASKLRPGQVNPTL 274

Query: 261 YVTQKGVEYIAICDKRDLGGEIALK--------AYLSAQNTPTKIEKHEAEYVKKLRSN 311
                G E + + D+R   G  A           ++  +    K E    + ++ +R  
Sbjct: 275 IRVPDGFEIVRLVDRRQSQGTSAAAPKIVQTHVRHILLRVGEGKSEGQARQQLQDIRRQ 333



 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/287 (10%), Positives = 91/287 (31%), Gaps = 19/287 (6%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           ++G+ IT  D ++ +  +  Q+     ++  +       +K            +      
Sbjct: 160 VDGK-ITVSD-AEVVNYIASQRGPSAAQQQDL-RFQHIFIKAPTNAPQAEIEVAQKKAEA 216

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN--------------D 151
            +Q A +     +   +  +           + A  ++  +VV                 
Sbjct: 217 LLQQATSGADFEKLAKNNSEANDAKKGGDLGFKAPGALPAEVVDAASKLRPGQVNPTLIR 276

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
               +  + +      Q       +          +   + +++G  +++++D       
Sbjct: 277 VPDGFEIVRLVDRRQSQGTSAAAPKIVQTHVRHILLRVGEGKSEGQARQQLQDIRRQVEA 336

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                     ++        G   ++   +  P+F+  +        + P  T+ G   I
Sbjct: 337 GGDFAKFARTYSQDGSASQGGDLGWISPGETVPEFERAMNNLQDGQISQPVRTEYGYHLI 396

Query: 271 AICDKRDLGGEIALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D+R+  G +  +  +        K E+  A+++++LR ++ + Y
Sbjct: 397 QVIDRRESEGSVQQQMDIARQAIGQRKAEQAYADWLRELRDSSYVQY 443


>gi|78067506|ref|YP_370275.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           383]
 gi|122070639|sp|Q39D35|SURA_BURS3 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|77968251|gb|ABB09631.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           383]
          Length = 452

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 98/302 (32%), Gaps = 22/302 (7%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------LEKIAVQELIVE 83
             +   ++  +   +N +VIT  ++ +R  L+  +             L    + ++++E
Sbjct: 32  GSQGAQLADEVVAVVNNDVITGRELDQRAGLIARRLQQQNAPVPPTDQLRAQVLNQMVLE 91

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            ++ Q+ +  GI  D  TV     + A+  G++ E +   L+ QG+  + F      + +
Sbjct: 92  RIQVQKAKDDGIRIDDATVQSTLQRLAQANGMTLEQYRGRLEAQGVPWSVFTSDARTELM 151

Query: 144 WPDVVKNDFMLKYGNLEMEIPAN----KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
              + + +   K    + E+       +    +           + +  +    +    Q
Sbjct: 152 LSKLREREVDGKITVSDAEVANYIASQRGPNASQQQDLRFQHIFIKAPTNAPQADIEAAQ 211

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN 259
           K+     +            +  +        G   +   S L     +   K +    N
Sbjct: 212 KKADALLQQAKSGADFEKLAKNNSEANDAKKGGDLGFKAPSALPADVVDAASKLRPGQVN 271

Query: 260 P--YVTQKGVEYIAICDKRDLGGEIALK--------AYLSAQNTPTKIEKHEAEYVKKLR 309
           P       G E + + D+R   G  A           ++  +    K E    + +  +R
Sbjct: 272 PTLIRVPDGFEIVRLVDRRQSQGATAAAPKIVQTHVRHILLRVGEGKSEGQARQQLADIR 331

Query: 310 SN 311
           + 
Sbjct: 332 NQ 333



 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/287 (10%), Positives = 89/287 (31%), Gaps = 19/287 (6%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           ++G+ IT  D ++    +  Q+     ++  +       +K            +      
Sbjct: 160 VDGK-ITVSD-AEVANYIASQRGPNASQQQDL-RFQHIFIKAPTNAPQADIEAAQKKADA 216

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN--------------D 151
            +Q A++     +   +  +           + A  ++  DVV                 
Sbjct: 217 LLQQAKSGADFEKLAKNNSEANDAKKGGDLGFKAPSALPADVVDAASKLRPGQVNPTLIR 276

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
               +  + +      Q       +          +   + +++G  ++++ D       
Sbjct: 277 VPDGFEIVRLVDRRQSQGATAAAPKIVQTHVRHILLRVGEGKSEGQARQQLADIRNQVEA 336

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                     ++        G   ++   +  P+F+  +        + P  T+ G   I
Sbjct: 337 GGDFAKFARTYSQDGSASQGGDLGWISPGETVPEFERAMNNLQDGQISQPIRTEYGYHLI 396

Query: 271 AICDKRDLGGEIALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            +  +R+  G +  +  +        K E+  A+++++LR ++ + Y
Sbjct: 397 QVLSRREAEGSVQQQMDIARQAIGQRKAEQAYADWLRELRDSSYVQY 443


>gi|253701697|ref|YP_003022886.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
 gi|251776547|gb|ACT19128.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
          Length = 341

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 90/287 (31%), Gaps = 13/287 (4%)

Query: 41  RIRTTINGEVITDGDISKRIALLKLQKIN------GELEKIAVQELIVETLKKQEIEKSG 94
            +   +NG+ I   ++ +   +L   +         ELEK A+ +L+   L  Q      
Sbjct: 52  EVVARVNGKEIHRNELERSKKILMAGQPGIPPYLLKELEKQALDQLVGAELMYQAGL-GL 110

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
              D + +    +   ++     + +   L   G+ +   ++Y     +  ++V      
Sbjct: 111 QIKDLDRMADAKLVQIKSGFKDQQVYEKELANIGMTEQMLREYSRRDLVIANLVNTKLAA 170

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
                ++EI            ++  +R     I  +        +K    AE     + +
Sbjct: 171 DLQVTDLEIEKFYADNPERFEQKEQVRASHILIGCDSKGTAEEKKKARDKAERLLKEVKE 230

Query: 215 DCNKLE---KFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
             +  +   + ++     + G   Y     + P F+           ++   T  G   +
Sbjct: 231 GADFAKLARENSTCPSATNGGDLGYFPRGKMVPPFEEAAFALKSGEVSDVVETGFGFHLV 290

Query: 271 AICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
              D+           +  + A     K  +  A ++ + + +A I 
Sbjct: 291 KQTDRIKAEKVSLATAREKIVAYLKSQKTGEVVASFIGRAKQDAKIE 337


>gi|306838742|ref|ZP_07471576.1| Chaperone surA precursor [Brucella sp. NF 2653]
 gi|306406144|gb|EFM62389.1| Chaperone surA precursor [Brucella sp. NF 2653]
          Length = 317

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/314 (21%), Positives = 132/314 (42%), Gaps = 10/314 (3%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWA---MSSRIRTTINGEVITDGDISKRIALLKLQK 67
            F + L    +    C+  + +  + A     S ++  ++G  IT+ DI  R+A LKLQ+
Sbjct: 1   MFARPLIASLLGAAVCLTALGTVAAPAFAAGESEVKVIVSGNAITNSDIKHRMAFLKLQR 60

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
            +G L ++A  EL  E LK+ E++  GI      V+  +   A    ++    +  +++ 
Sbjct: 61  KSGNLNQLARNELTEEMLKRIEMKSRGINISDKEVDDAYAGFASRNKMTLAQLNQVMNQS 120

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
           G+   HFK+Y+ +Q  W  +V   F       E E      K                  
Sbjct: 121 GVTPEHFKKYIMVQMGWGRLVSARFRATGMVSEQEAVQRMLKNGGKKPVATEYHLQQVIF 180

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF- 246
                +    +  + +    +     ++C+   + A  I DV++     ++E  L  ++ 
Sbjct: 181 VVPASKRSPALLAKRRQEANALRARFQNCDSTRQQAKGILDVTVRDLGRIIEPQLPGEWS 240

Query: 247 QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ------NTPTKIEKH 300
           +++     N TT P+ T+KGVE++A+C  R +  +   +   S +          K E+ 
Sbjct: 241 KDVKAAGVNRTTKPHDTEKGVEFLAVCSTRQVSDDRVAQLVFSMEGADSPAGQEKKAEEL 300

Query: 301 EAEYVKKLRSNAII 314
             +YV++LR  A I
Sbjct: 301 SKKYVQELREKATI 314


>gi|254480950|ref|ZP_05094196.1| SurA N-terminal domain family protein [marine gamma proteobacterium
           HTCC2148]
 gi|214038745|gb|EEB79406.1| SurA N-terminal domain family protein [marine gamma proteobacterium
           HTCC2148]
          Length = 425

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 105/312 (33%), Gaps = 12/312 (3%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK----- 67
           IK +     L    +   ++     M  ++   +  ++I   ++ +R+  +         
Sbjct: 3   IKAMLLGTCLTASALATGLARAETQMLDQVIAVVEDDIIMASELRERMTSVTENISTRGV 62

Query: 68  ---INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L +  +  LI+E+++ Q+  + G+      +N    + A   GLS + F   L
Sbjct: 63  EMPPEDVLIRETLDRLILESIQMQKGARVGVRISDTQLNGAMQRVAAQNGLSLDQFRMAL 122

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           ++QG      ++ +  + I   V + +   +    E E+       +   + +   + + 
Sbjct: 123 EQQGQSYQVMREQIRKELIIQRVQQGNVNQRIEITEQEVENFLATEEGQKLTQPEYQIMH 182

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS-KIHDVSIGKAQYLLESDLH 243
             +  +       V++           +       E  ++   ++ + G   +    DL 
Sbjct: 183 ALLAVSPGAPAAEVERAEAYVTRLLEEISAGAPFDEVVSAPGPYNFTGGNLGWRKLDDLP 242

Query: 244 PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKH 300
             F ++        T    +  G   + + D+R   ++        ++  + +    +  
Sbjct: 243 SLFSDVAPGLSKGKTTLVKSDSGFHLVHMADRRGGENMMVSQTKVRHILVKPSEIMTDGQ 302

Query: 301 EAEYVKKLRSNA 312
               V  L++ A
Sbjct: 303 AKALVTSLKARA 314



 Score = 95.5 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/281 (10%), Positives = 85/281 (30%), Gaps = 16/281 (5%)

Query: 46  INGEV-ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           +N  + IT+ ++   +A  + QK+     +      I+  L            +      
Sbjct: 150 VNQRIEITEQEVENFLATEEGQKLTQPEYQ------IMHALLAVSPGAPAAEVERAEAYV 203

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS------IWPDVVKNDFMLKYGN 158
             +    + G   ++  S          +               + P + K    L   +
Sbjct: 204 TRLLEEISAGAPFDEVVSAPGPYNFTGGNLGWRKLDDLPSLFSDVAPGLSKGKTTLVKSD 263

Query: 159 LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
               +     +     +     +     +  +++   G  +  +   +          + 
Sbjct: 264 SGFHLVHMADRRGGENMMVSQTKVRHILVKPSEIMTDGQAKALVTSLKARAEDGEDFADL 323

Query: 219 LEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKR 276
             +++  I      G   +     + P+F+  ++ +     ++P  +Q G   + + D+R
Sbjct: 324 AREYSEDIGSAQEGGDLGWTDPGQMVPEFEQTMQITAVGEISDPVKSQFGWHVLEVLDRR 383

Query: 277 DLG-GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           D    + A K          K ++    +++++R  A +  
Sbjct: 384 DEDMTDTATKNMAMNYLHNRKYQEELDAWLRQIRDEAFVDI 424


>gi|238752276|ref|ZP_04613756.1| Chaperone surA [Yersinia rohdei ATCC 43380]
 gi|238709544|gb|EEQ01782.1| Chaperone surA [Yersinia rohdei ATCC 43380]
          Length = 434

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 106/296 (35%), Gaps = 16/296 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   +    ++ +     ++   ++  V+   D+   +  +KL            G L
Sbjct: 7   LILGLVVCANTAFAAPQEVDKVAAVVDNGVVLQSDVDGLLQSVKLNAQQAGQQVPDDGTL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K GIT     ++      A    ++     S L   G+  +
Sbjct: 67  RHQVLERLIMDNILLQMAKKMGITVSDEALDKAIADIAAQNRMTPAQMRSRLAADGLNYD 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            +++ +  + +  +V  N+   +   L  E+ +  +++ N T  +  +      IP  + 
Sbjct: 127 TYREQIRKEMLTSEVRNNEVRRRITILPQEVESLAKQIGNQTSGDAELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            +Q  V +  + A++    +    +        ++    +  G+  +    +L   F + 
Sbjct: 187 PSQQQVDQAEELAKKLASDIKAGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAER 246

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKH 300
           L    + +   P  +  G   + + D R     +        ++  + +P   +  
Sbjct: 247 LQSAKKGDIVGPIRSGVGFHILKVNDIRGADKTVSVTELHARHILLKPSPVMTDDQ 302



 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 43/140 (30%), Gaps = 3/140 (2%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLL 238
               +   P   + +     K    A + +          ++ +      +  G   +  
Sbjct: 286 HARHILLKPSPVMTDDQARAKLSAAAADIKSGKASFATIAKEISQDPGSAMQGGDLGWAS 345

Query: 239 ESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTK 296
                P F++ + K  +   + P  +  G   I + D R +   + A K          K
Sbjct: 346 PDIYDPAFRDAVMKLQKGEISAPVHSSFGWHLIQLVDSRQVDKTDAAQKDRAYRMLFSRK 405

Query: 297 IEKHEAEYVKKLRSNAIIHY 316
             +    ++++ R+ A +  
Sbjct: 406 FAEEAQTWMQEQRAAAYVKI 425


>gi|83591773|ref|YP_425525.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodospirillum
           rubrum ATCC 11170]
 gi|83574687|gb|ABC21238.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodospirillum
           rubrum ATCC 11170]
          Length = 444

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/313 (16%), Positives = 116/313 (37%), Gaps = 10/313 (3%)

Query: 8   SLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL---- 63
           +L   + +    +V ++ C  P+ + ++   + RI   +N + ++  D++ RI ++    
Sbjct: 26  ALGRLLGIALLAWVAVLGCGWPVHTAQAAVPTQRIAAVVNEDAVSLYDLNARIDIVMATG 85

Query: 64  ---KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
                 ++   L    ++ LI ETLK QE +++ +T  +  +N    +  R   L     
Sbjct: 86  GMPNSPEVRQRLAPQILRALIDETLKIQEAKRANVTVSTEDINGGIERLERQNKLPPGGL 145

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
                  G+        +  +  W   V++    +    E EI   +Q ++    +   +
Sbjct: 146 EKAFKAAGLDQQSLIHQIRAELGWIKAVQSTLGPRVNVSEDEISLYQQNLQRNLGKPEYL 205

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
              +F   DN  Q+   +    +  E+ RL         ++F+        G   ++   
Sbjct: 206 VADIFLPVDNAAQDAEVLTAAQRMIEQMRL-GANFAALAQQFSRGPAAQRGGDLGWVGPG 264

Query: 241 DLHPQ-FQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI-E 298
           ++  +  Q L   +  N + P  T  G   + + D+R   G  +    +S    P +   
Sbjct: 265 EIDAEVLQALGAMAPGNLSQPIRTFGGYHILLLRDQRIASGGASSLLKMSRIVIPLRGPR 324

Query: 299 KHEAEYVKKLRSN 311
               E +  LR  
Sbjct: 325 MPTPERLADLRQR 337



 Score = 51.6 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 3/86 (3%)

Query: 232 GKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA 290
           G    +  + L  + QN+++       + P         + ICD+    G +  +  L  
Sbjct: 359 GSMGSIDPARLPAEAQNVIRDLPAGQPSTPLTMDNAEIRLMICDR--PTGGLPGRDILRE 416

Query: 291 QNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +    K++      ++ LR  AII  
Sbjct: 417 RLIEQKLQNLAQRRLRDLRQQAIIDI 442


>gi|220932946|ref|YP_002509854.1| peptidil-prolyl cis-trans isomerase [Halothermothrix orenii H 168]
 gi|219994256|gb|ACL70859.1| peptidil-prolyl cis-trans isomerase [Halothermothrix orenii H 168]
          Length = 332

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/338 (12%), Positives = 99/338 (29%), Gaps = 41/338 (12%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI-- 68
            F + +  +  L++     +++      +  I   ++G+ IT  ++ +      +     
Sbjct: 2   RFRRSVFLFLALVLVISFSVLAEDKVEKTDNIAAVVDGKEITISEVDEYARTRDVIMQLY 61

Query: 69  -------------------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTV----NYF 105
                                E  K+ + ELI   L  +E +  GI      +    N  
Sbjct: 62  QANGEFTQLILSTEAGNELINEYRKLKLDELITRELLIKEAKNQGINVSKEEMDKIFNEQ 121

Query: 106 FVQHARNTGLSAEDFSSFLDKQG----IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
                +   ++ E     L++QG        +         +  + ++   M      E 
Sbjct: 122 IEMVKQKNNINEEQLLQALNQQGIESLDQYKNLFFEQNGDLLLINKLREKVMEDVSVEES 181

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
            +       K        I+                 +K  ++               ++
Sbjct: 182 AVREYYDNNKENFKHGTQIKARHIL---------VETEKEAREILNELENGADFGEMAKE 232

Query: 222 FASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK--RDL 278
           +++     + G   Y  +  + P+F+           ++P  TQ G   I + DK    +
Sbjct: 233 YSTGPSSKNGGDLGYFGKGRMVPEFEEAAFALKVGQISDPVKTQYGYHIIKVEDKVEEGI 292

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                +K  +       K +     ++K+LR  A I  
Sbjct: 293 TPFDEVKDKIKNNLLQQKQQTAWNNFLKELRDKAEIEI 330


>gi|261493819|ref|ZP_05990333.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261495044|ref|ZP_05991511.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261309286|gb|EEY10522.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261310522|gb|EEY11711.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 314

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 107/316 (33%), Gaps = 17/316 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +KL+ + F + +  +   ++  + A   R+   +N   I    + +   +L  +K     
Sbjct: 1   MKLVKSLFAVAVATMS--LTQTAHAFEERVVALVNDTPIMQSQVQR---VLGKKKATETA 55

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           ++ A+ ++I + L +Q ++++G+      VN      A   G++       LD QGI   
Sbjct: 56  QRAAIDQVIDDMLVQQAMKEAGVKVSPAAVNQAVENVAIQNGITYGQLLDALDYQGITLE 115

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV---------REYLIRTV 183
            FK+ +A Q     V              ++ A  +++               +    + 
Sbjct: 116 QFKRNIAQQMAMEQVRHISISKSIQVAPQQVQALAKELMAKDKAAGKLKTVSGKEHRISH 175

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL 242
           +    +  L +     K      +            +  +         G   +      
Sbjct: 176 ILLKTNPILNDAQAKAKLSSLTADINSGKISFEEAAKAHSVDYASGTDGGDLGFNFLEIY 235

Query: 243 HPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKH 300
            P F N+  K   N  + P+ +Q G   + + D R+              Q    + E+ 
Sbjct: 236 DPAFANVASKIKPNQISAPFKSQFGWHILKVTDTRNGDRTEDAYHQRAYQQLVNKQAEEA 295

Query: 301 EAEYVKKLRSNAIIHY 316
             ++VK LR  A I Y
Sbjct: 296 SKDWVKALRKTANIQY 311


>gi|158521718|ref|YP_001529588.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfococcus
           oleovorans Hxd3]
 gi|158510544|gb|ABW67511.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfococcus
           oleovorans Hxd3]
          Length = 316

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 103/307 (33%), Gaps = 18/307 (5%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL------------EK 74
           +    +     +  RI   +N E+I   ++ K +AL +      +L             +
Sbjct: 7   LTSCRADTEAEVVDRIVAFVNQEIILLSELEKAMALYETAIRERQLPADTEKEMLYRARQ 66

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             +  LI   L +Q  ++ G+T D   V+    +  R+   + ED    L ++G     +
Sbjct: 67  EMIDHLIDRRLIQQRADELGVTVDDREVDDAMERMKRSMLFTDEDLRQSLAEKGYTLEGY 126

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR---TVLFSIPDNK 191
           +  L  Q +   V+  +   K     ++I A  +                 ++    D  
Sbjct: 127 RNELREQILRQRVLTLEVKSKVVVTPVDIQAYYETHPEEYSAGRQYHLRNIIMRVDKDMP 186

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
            +++  + + ++   +             +++        G   +    DL PQ +  ++
Sbjct: 187 DESKKTISEMMQKIHDRLQAGESFETLASQYSQSSFAEKGGDLGFFALEDLAPQLREAIE 246

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
           +      T    T  G + + + +   +           +  +     +E+   ++V +L
Sbjct: 247 ELQAGEFTPVLDTPLGYQILYLEEIQEKPAVSLEKATDEIREKLYEDLLEERFEKWVTEL 306

Query: 309 RSNAIIH 315
           R  + I 
Sbjct: 307 REKSHIK 313


>gi|271502081|ref|YP_003335107.1| Peptidylprolyl isomerase [Dickeya dadantii Ech586]
 gi|270345636|gb|ACZ78401.1| Peptidylprolyl isomerase [Dickeya dadantii Ech586]
          Length = 430

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/303 (12%), Positives = 103/303 (33%), Gaps = 16/303 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   +   +++ +    ++I   ++  V+ + DI+  +  +KL              L
Sbjct: 7   LVLGLALSANMAFAAPQEVNKIAAVVDNSVVLESDINSLLQSVKLNAQEAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A    +S +   S L  +G+  +
Sbjct: 67  RHQILERLIMDNIIMQMAQKMGVQVTDEQLDRSITNIAAQNHMSLDQLRSRLAAEGVSFD 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +    +  DV  ++   +   L  E+ A  Q++ +       +      IP  + 
Sbjct: 127 TYRSQIRKDMMIADVRNSEVRRRVTVLPQEVDALAQQLASQGANGPEVNLSQILIPLPEN 186

Query: 193 QNQGFVQKRIKDAE---ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
             Q  V K    A    +   +          +++    +  G+  +    +L   F + 
Sbjct: 187 PTQDQVDKAESLANRLVKEASQGADFGKLAITYSADPQALKGGQMGWGRPQELPSLFAER 246

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRD----LGGEIALKAYLSAQNTPTKIEKHEAEY 304
           L    +     P  +  G   + + D R     +        ++    +    +      
Sbjct: 247 LANPQKGQIIGPIRSGVGFHILRVNDTRGGSQAVSVTEVHARHILLTTSVVMNDAQAKAK 306

Query: 305 VKK 307
           +++
Sbjct: 307 LEE 309



 Score = 85.1 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 16/140 (11%), Positives = 41/140 (29%), Gaps = 3/140 (2%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLL 238
               +       + +     K  + A + R          ++ +         G   +  
Sbjct: 286 HARHILLTTSVVMNDAQAKAKLEEVASQIRSGKLSFAAAAKQLSQDPGSANQGGDLGWAS 345

Query: 239 ESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTK 296
                P F++  +   +   + P  +  G   I + D R +   + A K          K
Sbjct: 346 PDMYDPAFRDALMDLKKGEISAPVHSSFGWHLIQLLDTRQVDKTDAAQKDRAYRMLFNRK 405

Query: 297 IEKHEAEYVKKLRSNAIIHY 316
             +    ++++ R+ A +  
Sbjct: 406 FAEEAQTWMQEKRAAAYVKI 425


>gi|85713800|ref|ZP_01044790.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter sp.
           Nb-311A]
 gi|85699704|gb|EAQ37571.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter sp.
           Nb-311A]
          Length = 305

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 92/313 (29%), Gaps = 47/313 (15%)

Query: 7   TSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI---SKRIALL 63
           T  S  ++L ++     +  ++ + +    A +  +   +NG  I   D+    + +   
Sbjct: 8   TKHSLRVRLASSALGGCLAAVLFVGTPVHAADADPVLAKVNGTEIHQSDVNLAEQELGPS 67

Query: 64  KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
             Q      ++  +  LI   +  +  E+  I                            
Sbjct: 68  LAQMDPAAKQENILSFLIDMKIITKAAEEKKIENSEEFKKRL------------------ 109

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                        +   + +   ++ +       +  M+        +  + +E   R +
Sbjct: 110 ------------AFARDRLLMDRLLASQGKAAITDDAMKTVYADASKQITSEQEVHARHI 157

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
           L    D   + +G ++K                   +K +        G   +  +  + 
Sbjct: 158 LVPTEDEAKKIEGELKK-----------GADFAELAKKESKDPGASDGGDLGFFTKEQMV 206

Query: 244 PQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEA 302
           P+F +          ++P  TQ G   I + +KR           +  Q       K +A
Sbjct: 207 PEFSKVAFALEPGKISDPVKTQFGWHIIKVEEKRARKA--PDFDQVKPQIEQFVTRKAQA 264

Query: 303 EYVKKLRSNAIIH 315
           EYV KLR  A I 
Sbjct: 265 EYVAKLRETAKIE 277


>gi|238795196|ref|ZP_04638783.1| Chaperone surA [Yersinia intermedia ATCC 29909]
 gi|238725483|gb|EEQ17050.1| Chaperone surA [Yersinia intermedia ATCC 29909]
          Length = 434

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 108/301 (35%), Gaps = 16/301 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--------EL 72
           +++   +    ++ +     ++   ++  V+   D+   +  +KL              L
Sbjct: 7   LILGLVVCANTAFAAPQEVDKVAAVVDNGVVLQSDVDGLLQSVKLNAQQSGQQVPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ ++ Q  +K GIT +   ++      A    ++     S L   G+  +
Sbjct: 67  RHQILERLIMDNIQLQMAKKMGITINDEALDKAIADIAAQNRMTTAQMRSRLAADGLNYD 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            +++ +  + +  +V  N+   +   L  E+ +  +++ N T  +  +      IP  + 
Sbjct: 127 TYREQIRKEMLTSEVRNNEVRRRITILPQEVESLAKQIGNQTSGDAELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            +Q  V +  + A +    +    +        ++    +  G+  +    +L   F + 
Sbjct: 187 PSQQQVDQAEELATKLVSDIKSGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAER 246

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
           L   ++ +   P  +  G   + + D R     +        ++  + +P   +      
Sbjct: 247 LQSANKGDVVGPIRSGVGFHILKVNDIRGADKTISVTEVHARHILLKPSPVMTDDQARTK 306

Query: 305 V 305
           +
Sbjct: 307 L 307



 Score = 82.4 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 4/168 (2%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                G   +++   +   K I+V E   R +L         +Q    K    A + +  
Sbjct: 259 IRSGVGFHILKVNDIRGADKTISVTEVHARHILLKPSPVMTDDQART-KLAAAAADIKSG 317

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEY 269
                   ++ +      V  G   +       P F++  +K  +   + P  +  G   
Sbjct: 318 KSSFATIAKEISQDPGSAVQGGDLGWASPDIYDPAFRDALMKLQKGEISAPVHSSFGWHL 377

Query: 270 IAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           I + D R +   + A K          K  +    ++++ R+ A +  
Sbjct: 378 IQVVDTRQVDKTDAAQKDRAYRMLFSRKFAEEAQTWMQEQRAAAYVKI 425


>gi|90411942|ref|ZP_01219950.1| putative survival protein SurA [Photobacterium profundum 3TCK]
 gi|90327200|gb|EAS43572.1| putative survival protein SurA [Photobacterium profundum 3TCK]
          Length = 434

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/314 (12%), Positives = 112/314 (35%), Gaps = 15/314 (4%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +K      + I    +   S  +     ++ T +N  VI   D++  +  +++       
Sbjct: 1   MKKWKISLLGIAIWSLAASSMAAPKELDKVVTLVNDSVILQSDVNAMLQTVRINAAEQNQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L +  +++LI+ETL+ Q+ E+ GI  D   ++    + A+   L+       L
Sbjct: 61  PLPDNALLTEQVMEKLIIETLQLQQAEQFGIRIDDTRLDQAVAEIAKERELTIPQLQQEL 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           +K GI  + F++ +       +        +   L  E+    +++   T++        
Sbjct: 121 EKSGISYSIFREQMRRDMTASEARTIQVRRRINILPQEVDMLAEQLNKQTLQTVQFNISH 180

Query: 185 FSIPDNKLQN---QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             +   +      +   Q++ +   +         N    ++     +  G+  ++ + +
Sbjct: 181 IQLRVEEGATKVQREETQQQAQQLVDELKNGADFANLAYSYSKGPKALQGGEWGWMRQEE 240

Query: 242 LHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKI 297
           +   F + +K + +     P+ +  G   I + D +    +        ++  + +    
Sbjct: 241 MPTIFADQIKSNGKGAIIGPFRSGVGYHIIKVNDVKGLETVSVTEVNARHILIKTSVILS 300

Query: 298 EKHEAEYVKKLRSN 311
           +      ++K R +
Sbjct: 301 DDGAKRQLEKARQD 314



 Score = 85.1 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 83/273 (30%), Gaps = 9/273 (3%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++      L  Q +      I+  +L VE     ++++      +  +       A
Sbjct: 154 ILPQEVDMLAEQLNKQTLQTVQFNISHIQLRVEEG-ATKVQREETQQQAQQLVDELKNGA 212

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
               L+          QG      +Q          +  N      G     +  +  K+
Sbjct: 213 DFANLAYSYSKGPKALQGGEWGWMRQEEMPTIFADQIKSNGKGAIIGPFRSGVGYHIIKV 272

Query: 171 KNITV------REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
            ++         E   R +L         +    Q      +    R        +  + 
Sbjct: 273 NDVKGLETVSVTEVNARHILIKTSVILSDDGAKRQLEKARQDILAGRQTFADEAQKLSSD 332

Query: 225 KIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG-GEI 282
                + G+  +       P+F++ ++   +   + P+ T  G   + + ++R++   + 
Sbjct: 333 PGSAANGGELGWQTPDLYVPEFKDKVETLPKGTISEPFKTVHGWHIVEVLERRNVDRTDA 392

Query: 283 ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           A+K          K  +    ++++LR+ A I 
Sbjct: 393 AVKNRAYRILFSRKFNEEAQAWLQELRAGAYIE 425


>gi|189423767|ref|YP_001950944.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi
           SZ]
 gi|189420026|gb|ACD94424.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi
           SZ]
          Length = 355

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/300 (13%), Positives = 94/300 (31%), Gaps = 17/300 (5%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING---------ELEKIAVQELIVET 84
                 + +   +N ++IT  ++ +    +                 L  + +  LI + 
Sbjct: 49  AGAKRINGVAAIVNDDIITFREVLRESQAVIQDAQKKGLVDDTARHNLRVMVLDRLIEKL 108

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHA-RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
           L +Q+I++ GI    + +         +N  ++     + L  QG     ++  L  Q  
Sbjct: 109 LTEQKIKELGIKIGDDEIRQAIDDVKRQNNNMTQSQLEAALKSQGYTFAQYEVQLREQLE 168

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
              +V  +   K    E E     Q   +    E   +     I  ++      +Q+ + 
Sbjct: 169 RLRLVSMEVRSKIYVSEKEAEEYYQSHLSSYAEEETFKASHIFIKVDEKAPADQIQQAMN 228

Query: 204 DAEESRL---RLPKDCNKLEKFASKIHDVS-IGKAQYLLESDL-HPQFQNLLKKSQNNTT 258
            A +      +         +++         G        ++     + +L        
Sbjct: 229 KALKVLFEARQGKDFAQLAREYSDDAAAKKDGGSLGTFKRGEMLADLEKAILPLKPGEVG 288

Query: 259 NPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
               T  G+  + + ++    +     +KA +S      K +     ++K+LR+ A I  
Sbjct: 289 ELVSTPSGLHIVKLDERSSGKVKPFETVKADISDLLYRQKQDSRFTSWMKELRTKASIEI 348


>gi|254718820|ref|ZP_05180631.1| Chaperone surA precursor [Brucella sp. 83/13]
 gi|265983805|ref|ZP_06096540.1| SurA domain-containing protein [Brucella sp. 83/13]
 gi|264662397|gb|EEZ32658.1| SurA domain-containing protein [Brucella sp. 83/13]
          Length = 318

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/314 (21%), Positives = 132/314 (42%), Gaps = 10/314 (3%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWA---MSSRIRTTINGEVITDGDISKRIALLKLQK 67
            F + L    +    C+  + +  + A     S ++  ++G  IT+ DI  R+A LKLQ+
Sbjct: 2   MFARPLIASLLGAAVCLTALGTVAAPAFAAGESEVKVIVSGNAITNSDIKHRMAFLKLQR 61

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
            +G L ++A  EL  E LK+ E++  GI      V+  +   A    ++    +  +++ 
Sbjct: 62  KSGNLNQLARNELTEEMLKRIEMKSRGINISDKEVDDAYAGFASRNKMTLAQLNQVMNQS 121

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
           G+   HFK+Y+ +Q  W  +V   F       E E      K                  
Sbjct: 122 GVTPEHFKKYIMVQMGWGRLVSARFRATGMVSEQEAVQRMLKNGGKKPVATEYHLQQVIF 181

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF- 246
                +    +  + +    +     ++C+   + A  I DV++     ++E  L  ++ 
Sbjct: 182 VVPASKRSPALLAKRRQEANALRARFQNCDSTRQQAKGILDVTVRDLGRIIEPQLPGEWS 241

Query: 247 QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ------NTPTKIEKH 300
           +++     N TT P+ T+KGVE++A+C  R +  +   +   S +          K E+ 
Sbjct: 242 KDVKAAGVNRTTKPHDTEKGVEFLAVCSTRQVSDDRVAQLVFSMEGADSPAGQEKKAEEL 301

Query: 301 EAEYVKKLRSNAII 314
             +YV++LR  A I
Sbjct: 302 SKKYVQELREKATI 315


>gi|251793857|ref|YP_003008589.1| SurA [Aggregatibacter aphrophilus NJ8700]
 gi|247535256|gb|ACS98502.1| SurA [Aggregatibacter aphrophilus NJ8700]
          Length = 308

 Score =  124 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/310 (15%), Positives = 104/310 (33%), Gaps = 19/310 (6%)

Query: 20  FVLIIFCIVPIVSY-KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQ 78
              + F  V I++   +     ++  T+NG  + +  +                 + A+ 
Sbjct: 3   LKSVFFSAVGILALVANVQAEEKVVATVNGIPVLESQVQ------SALNKKTNNRQAALN 56

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
           ++I + L  Q +++SG+  ++  V+      A   GL+       LD QGI    ++Q +
Sbjct: 57  KVIDDILVDQAVQESGVKVNNAQVDKIIEGIAAQNGLTFGQLLDALDYQGISYRAYRQQI 116

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV---------REYLIRTVLFSIPD 189
           A Q +  +V  +           ++ A  +KM +                    +    +
Sbjct: 117 AQQVMMSEVRNHAISQSVDISREQVEALAKKMLDEAKSKGSVAKVSDTQYEVRHILLKLN 176

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQY-LLESDLHPQFQ 247
             L +     +  +   +         +   K++       + G   Y   E  + P  Q
Sbjct: 177 PLLNDAQAKAQLEQIRADIIAGKMTFADAALKYSKDYLSGANGGSLGYAFPEMYVGPFNQ 236

Query: 248 NLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKHEAEYVK 306
            +    Q   + P+ T+ G   + + + R               Q    +++    ++V+
Sbjct: 237 AIRTTKQGVISAPFKTEFGWHILEVTNTRQGDRTEDAYRQKAYEQIVNQQLQDSARDWVQ 296

Query: 307 KLRSNAIIHY 316
            LR  A I Y
Sbjct: 297 ALRKRADIKY 306


>gi|54307618|ref|YP_128638.1| putative survival protein SurA [Photobacterium profundum SS9]
 gi|81697526|sp|Q6LV39|SURA_PHOPR RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|46912041|emb|CAG18836.1| putative survival protein SurA [Photobacterium profundum SS9]
          Length = 434

 Score =  124 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/314 (12%), Positives = 115/314 (36%), Gaps = 15/314 (4%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +K   +  + I    +   S  +     ++ T +N  VI   D++  +  +++       
Sbjct: 1   MKKWKSSLLGIAIWSLAASSMAAPKELDKVVTLVNDSVILQSDVNAMLQTVRINAAEQNQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L +  +++LI+ETL+ Q+ E+ GI  D   ++    + A+   L+       L
Sbjct: 61  PLPDDALLTEQVMEKLIIETLQLQQAEQFGIRIDDTRLDQAVAEIAKERELTIPQLQKEL 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           +K GI  + F++ +       +        +   L  E+    +++   T++        
Sbjct: 121 EKSGISYSIFREQMRRDMTASEARTIQVRRRINILPQEVEMLAEQLNKQTLQTVQFNISH 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE---KFASKIHDVSIGKAQYLLESD 241
             +   +   +   ++  + A++    L    +       ++     +  G+  ++ + +
Sbjct: 181 IQLRVEEGATKEQREETQQQAQQIVDELKNGADFANLAYSYSKGPKALQGGEWGWMRQEE 240

Query: 242 LHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKI 297
           +   F + +K + +     P+ +  G   I + D +    +        ++  + +    
Sbjct: 241 MPTIFADQIKSNGKGAIIGPFRSGVGYHIIKVNDVKGLETVSVTEVNARHILIKTSVILS 300

Query: 298 EKHEAEYVKKLRSN 311
           +      ++K R +
Sbjct: 301 DDGAKRQLEKARQD 314



 Score = 84.7 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 87/273 (31%), Gaps = 9/273 (3%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVE----TLKKQEIEKSGITFDSNTVNYFF 106
           I   ++      L  Q +      I+  +L VE      +++E ++          N   
Sbjct: 154 ILPQEVEMLAEQLNKQTLQTVQFNISHIQLRVEEGATKEQREETQQQAQQIVDELKNGAD 213

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD--VVKNDFMLKYGNLEMEIP 164
             +   +           +   +         A Q        +   F    G   +++ 
Sbjct: 214 FANLAYSYSKGPKALQGGEWGWMRQEEMPTIFADQIKSNGKGAIIGPFRSGVGYHIIKV- 272

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
            + + ++ ++V E   R +L         +    Q      +    R        +  + 
Sbjct: 273 NDVKGLETVSVTEVNARHILIKTSVILSDDGAKRQLEKARQDILAGRQTFADEAQKLSSD 332

Query: 225 KIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG-GEI 282
                + G+  +       P+F++ ++   +   + P+ T  G   + + D+R++   + 
Sbjct: 333 PGSAANGGELGWQTPDLYVPEFKDKIETLPKGTISEPFKTVHGWHIVEVLDRRNVDRTDA 392

Query: 283 ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           A+K          K  +    ++++LR+ A I 
Sbjct: 393 AMKNRAYRILFSRKFNEEAQAWLQELRAGAYIE 425


>gi|109899724|ref|YP_662979.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas
           atlantica T6c]
 gi|122070658|sp|Q15QB3|SURA_PSEA6 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|109702005|gb|ABG41925.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas
           atlantica T6c]
          Length = 431

 Score =  124 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 101/312 (32%), Gaps = 15/312 (4%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--- 71
           +  T     +   +   ++        +   ++  V+ +  I + +  +K   +      
Sbjct: 1   MKLTVVTFALLAFISFNTFAKQVRLDNVAVIVDQGVVLESQIEELVNTVKRNALTNNQTL 60

Query: 72  -----LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
                L   A++ LIV++L+ Q  E+ GI      ++      AR  G + ED    L  
Sbjct: 61  PSDRVLRTQAIERLIVDSLQNQMAERMGIQISDPQLDQTIDNIAREDGTTVEDLRKNLAS 120

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
           +G+    +++ +  + +  +V + +   +      EI      +     ++         
Sbjct: 121 EGVSFEVYREQVRKELVTGEVRRANVRRRIYITPQEISNLVTLIDEQGGQQAEYHLGHIL 180

Query: 187 IPDNKLQNQGFVQKRIK---DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
           I          V K         E      +        +S    +  G   ++  + + 
Sbjct: 181 IGFPPEPTDEDVSKAKDTAEKVLELLNNGSEFAKIATASSSGSKALEGGDLGWMNINSMP 240

Query: 244 PQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK---AYLSAQNTPTKIEK 299
             F + +   S+++   P  +  G   + I D R +      +    ++  + +    ++
Sbjct: 241 TLFAEAVQGTSKDDLIGPIRSGAGFHVLKIIDFRGIEKVEVAELKSRHILIKPSVILSDE 300

Query: 300 HEAEYVKKLRSN 311
              + + + R  
Sbjct: 301 KAEKMLTEFRKE 312



 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 44/137 (32%), Gaps = 3/137 (2%)

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLES 240
             +   P   L ++   +   +  +E            ++ ++     +  G   +   +
Sbjct: 287 RHILIKPSVILSDEKAEKMLTEFRKELLAGEADFAELAKEHSADPGSALRGGDLGWADPN 346

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK-AYLSAQNTPTKIE 298
              P F++ L+       + P  +  G   + + DKR        K           K  
Sbjct: 347 VYVPAFRDTLQSLEVGEISQPVRSTHGWHLMQLMDKRVQDATEKRKEDKAYQLLFQRKFA 406

Query: 299 KHEAEYVKKLRSNAIIH 315
           +    ++K++R +A + 
Sbjct: 407 EETEAWLKEMRDSAYVE 423


>gi|119504985|ref|ZP_01627062.1| Parvulin-like peptidyl-prolyl isomerase [marine gamma
           proteobacterium HTCC2080]
 gi|119459271|gb|EAW40369.1| Parvulin-like peptidyl-prolyl isomerase [marine gamma
           proteobacterium HTCC2080]
          Length = 436

 Score =  124 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/322 (11%), Positives = 109/322 (33%), Gaps = 11/322 (3%)

Query: 3   SKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIAL 62
           SK     + ++  L      +   ++   +        ++   ++ ++I   ++ +R+ L
Sbjct: 5   SKAMLMSTLYLPRLAATLATLACIVLAPWANAQIQTLDKVVAIVDDDIILATELQERLLL 64

Query: 63  LKLQKINGE--------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
           ++      +        L +  +  LI+E+++ Q   + G+      ++    + A  + 
Sbjct: 65  IQRNIEQRQIDAPPDEVLARETLDRLILESIQLQLANRYGVRIPDAQLDAAMARMASGSN 124

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
            + E F + ++  G      ++ +  + +   V + +        E E+           
Sbjct: 125 YTLEQFRAAVEANGQSYLAMREEIRREMMIQRVQQGNVSRNIEISEQEVDNFLSTEAGAE 184

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGK 233
           + +   R +   +  +K  ++   QK+    +     +    +  E  +  + +    G 
Sbjct: 185 MTQPEFRVIQALVEVSKKDSKADRQKKEDFVDGILASILAGKDFPEAVSVIEPYVFKGGD 244

Query: 234 AQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQ 291
             +     +   F  ++   +   T    +  G   + + D+  R+   E     ++  +
Sbjct: 245 LGWKKLDAIPSMFAAVIPSLKVGDTAKVASGAGFHLVYLADERGRERLVEQTEVRHILIK 304

Query: 292 NTPTKIEKHEAEYVKKLRSNAI 313
            T    E        +LR  A+
Sbjct: 305 PTEVLDEDAAIALATELRQRAM 326



 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/272 (8%), Positives = 78/272 (28%), Gaps = 4/272 (1%)

Query: 48  GEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
              I++ ++   ++  +      + E   +Q L+  + K  + ++       + +    +
Sbjct: 165 NIEISEQEVDNFLST-EAGAEMTQPEFRVIQALVEVSKKDSKADRQKKEDFVDGILASIL 223

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
                    +           +G        ++ +     +K     K  +         
Sbjct: 224 AGKDFPEAVSVIEPYVFKGGDLGWKKLDAIPSMFAAVIPSLKVGDTAKVASGAGFHLVYL 283

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI- 226
              +               I   ++ ++        +  +  +         ++++  I 
Sbjct: 284 ADERGRERLVEQTEVRHILIKPTEVLDEDAAIALATELRQRAMDGEDFGALAKEYSDDIG 343

Query: 227 HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG-GEIAL 284
                G+  +     + P+F   +        + P  +Q G   + +  +R+    E   
Sbjct: 344 SAQEGGELGWTSPGQMVPEFDATMATTEVGEISYPVKSQFGWHILEVTGRREENIAEQMR 403

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +  +       K ++    +++K+R  A +  
Sbjct: 404 RQQVMGYLHDQKYDEELEAWLRKIREEAFVDI 435


>gi|283850614|ref|ZP_06367901.1| SurA domain protein [Desulfovibrio sp. FW1012B]
 gi|283573857|gb|EFC21830.1| SurA domain protein [Desulfovibrio sp. FW1012B]
          Length = 330

 Score =  124 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/329 (13%), Positives = 110/329 (33%), Gaps = 26/329 (7%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--- 69
           +  L    ++++  +    +  +  +  ++   +NG++IT  D++ R+A L  +      
Sbjct: 1   MPRLPKICLMLVLLVALTTTAWATQLVDKVVAVVNGKLITMFDVNARLADLLQRTQGVSM 60

Query: 70  -------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
                   EL +  ++ +I + L +QE  +  ++     ++    +  +   L+ + F +
Sbjct: 61  RPDDPQAAELRRQVLESMINDILIEQEAARLKVSISETELDSQIDEIKKKNNLTQQQFVA 120

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
            L+K+G+    F++ + + S+   ++      K    + EI    +K K        I  
Sbjct: 121 ELNKEGMTLKDFRERMRLDSVKKRLLGFMVHRKVLVTDDEIRDYYEKNKGALPTAKSILG 180

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
              S     +      ++      +      K  +  +K++        G    +   DL
Sbjct: 181 PKVSGTIGFIM-VATKKQADDLRAQITSGSLKFSDAAKKYSIGPGRDQGGDLGDVQAKDL 239

Query: 243 -HPQFQNLLKKSQNNTTNPYVTQKGVEYIAI--------------CDKRDLGGEIALKAY 287
             P    L        + P +       + +                          +  
Sbjct: 240 APPLRDALKSVPAGQVSPPVMLDGKAVLLVLRTGAASTPAPAAPAPTPAGGPSFEGARDQ 299

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +       K +K   EY+  LRS A+I  
Sbjct: 300 IQEMLYKQKFDKLFQEYIDNLRSKAVIEI 328


>gi|309379764|emb|CBX21540.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 327

 Score =  124 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 78/286 (27%), Gaps = 17/286 (5%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKIN------GELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT   +++ +A  K            EL    + +L+ ++L  Q  ++
Sbjct: 50  SDGIAAVADNEVITRRRLAQAVADAKANLPKDVQIGDEELTGQVLMQLVNQSLIVQAGKR 109

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
                +           A          +    +        K           V + + 
Sbjct: 110 R----NIQASEAEIDAAAAQNPQLKHLSAEQRRELADSIIAEKVRQQAVMQNSRVSEAEV 165

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
                    E    +             R     I  +        +  I+   +     
Sbjct: 166 DRFI-----EQAQKQGITLPEGEPLRQYRAQHILIKADGENAAVGAESTIRKIYDQARNG 220

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                   +++      + G   +  +  +   F+  +        + P  TQ G   I 
Sbjct: 221 TDFSGLARQYSQDAGAGNGGDLGWFSDGVMVAPFEAAVHALKPGQVSAPVRTQFGWHIIK 280

Query: 272 ICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           + + RD    E  ++  +       K E+  AE ++ L S A I  
Sbjct: 281 LNEVRDAGTPEERIRNSVRQYIFQQKAEQATAELLRDLHSGAYIDI 326


>gi|146340301|ref|YP_001205349.1| hypothetical protein BRADO3324 [Bradyrhizobium sp. ORS278]
 gi|146193107|emb|CAL77118.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
          Length = 287

 Score =  124 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 111/284 (39%), Gaps = 3/284 (1%)

Query: 36  WAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGI 95
            A +  I   +NG+ ITD DI +R  L  L     +  +  + ELI + +K +E +K G+
Sbjct: 3   SAHAQSIVVMVNGDPITDYDIEQRSKLNFLSTHKQQSRQEVLNELIDDKVKIKEGKKFGV 62

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
              S+ ++  F        L+AE  +  L+ QG+     KQ +  + +W  +V+  +  +
Sbjct: 63  EPSSSDIDQSFAGMGSRMRLNAEQLTRSLESQGVRPETLKQRIKAEIVWTSLVRGRYKER 122

Query: 156 --YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
               + ++               +     +   +      +     +  +   E+     
Sbjct: 123 LFVSDKDVAAAVAAAGGDTGQQGQSFEYKMQPVVLIVPNSSNQGAMEIRQKEAEALRGRV 182

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAI 272
           + C      +    +  + +      +D+ P  + LL  +   + T P  T++G++ +A+
Sbjct: 183 QSCADANNISRTTANAVVKEIVVKTSADIPPNLRKLLDDTPIGHLTPPEATKQGIQMVAL 242

Query: 273 CDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           C +     +      +  Q    K E     Y++++R  A+I Y
Sbjct: 243 CARTPTTVDTPKAREIKEQMYAKKYEATSKAYLQEVRKAAMIEY 286


>gi|153007317|ref|YP_001381642.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030890|gb|ABS28658.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 317

 Score =  124 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 80/280 (28%), Gaps = 17/280 (6%)

Query: 43  RTTINGEVI----TDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFD 98
              +NGE I       ++ +  A          L +  + EL+  TL  QE     I   
Sbjct: 37  VALVNGEPIGADVLARELREASAGDARGDGGDVLRRRLLDELVDRTLLLQEARARSIVVG 96

Query: 99  SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGN 158
            + V   F++           F   L +Q +     K  LA Q     + +     +   
Sbjct: 97  QDQVERAFLRVRAE--YPGTHFDDLLAQQRLSQADLKARLADQLTVERLFEEQVYPQVQV 154

Query: 159 LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
            + EI                +  +   +           ++ +   E+ R         
Sbjct: 155 SDAEIQRYFADHAAEFEEPEKVHVLQVVV--------ASKEEALAVREKLRRNPQTFAEV 206

Query: 219 LEKFASKIHDVSIGKAQYLLESD-LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
             K +        G   Y+         F        N  ++   +  G     + D+R 
Sbjct: 207 ARKSSIAPEGKGGGDLGYIGRGSGFPEVFDVTFTLPLNRVSDVTPSPYGFHIFKVVDRRA 266

Query: 278 LG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                    +  ++A+    K  + + +YVK LR  A I 
Sbjct: 267 AQRRTLEQARGDIAAKLAREKRAQVQQDYVKGLRERARIE 306


>gi|154253778|ref|YP_001414602.1| SurA domain-containing protein [Parvibaculum lavamentivorans DS-1]
 gi|154157728|gb|ABS64945.1| SurA domain [Parvibaculum lavamentivorans DS-1]
          Length = 443

 Score =  124 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 38/282 (13%), Positives = 102/282 (36%), Gaps = 13/282 (4%)

Query: 18  TYFVLIIFCIVPI----VSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ------- 66
           T F+ +    V      ++  + + +  I   +N  +I+  D+ +R+ L+ L        
Sbjct: 25  TAFIFLAGLAVTPADMPLAQNAPSNTQGIAAVVNDRIISSYDLDQRVKLVMLSSGIPDTP 84

Query: 67  KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
           +    +    ++ L+ E L++QE  +  I      ++    + A+   +S +   +FL  
Sbjct: 85  ENISRIRGQVLRSLVDEYLQQQEAARLNIEVQQEEIDSALQRIAQRANMSVDQIEAFLKD 144

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
            G+     +  +     W  V++  F       ++EI    ++++  + +   + + +  
Sbjct: 145 GGVSRAALEAQIRSDIAWNRVIQQQFGPSVTVGDVEIDEVLRRLEEESDQPRYLVSEILI 204

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
             D+    +       +  E+ R +         +F+      + G+  ++  S L    
Sbjct: 205 TFDSPQHAEEIAGGAQRLVEQIR-QGAPFEAVAHQFSQSASAANGGEIGWVHASQLPEGV 263

Query: 247 -QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY 287
              + K      ++P  T  G   + +   +   G   ++  
Sbjct: 264 GSVVAKMQPGMVSDPIRTLNGFYIMQLKAMQTGSGADPMRDQ 305



 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/257 (12%), Positives = 75/257 (29%), Gaps = 10/257 (3%)

Query: 44  TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEK---SGITFDSN 100
            T+    I   ++ +R+      + + +   +  + LI     +   E    +    +  
Sbjct: 174 VTVGDVEI--DEVLRRLE-----EESDQPRYLVSEILITFDSPQHAEEIAGGAQRLVEQI 226

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                F   A     SA   +             +   ++ +     + +D +       
Sbjct: 227 RQGAPFEAVAHQFSQSASAANGGEIGWVHASQLPEGVGSVVAKMQPGMVSDPIRTLNGFY 286

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
           +      Q              +   +P         V +R ++AEE R +     +   
Sbjct: 287 IMQLKAMQTGSGADPMRDQYSLMQVLLPLTPDAEPQAVSRRAREAEEFRRQTNSCDDAAR 346

Query: 221 KFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
                +   +  K   +         Q L      NTT P  +++G+E + +C  +   G
Sbjct: 347 NITKYLSGAASPKRDVIAGQLDPRLRQALSGLKAGNTTAPIRSERGIEMVVVCGHKAAEG 406

Query: 281 EIALKAYLSAQNTPTKI 297
           E   +  + +     ++
Sbjct: 407 ERPTREQIDSSLYEQQL 423


>gi|49475336|ref|YP_033377.1| hypothetical protein BH05420 [Bartonella henselae str. Houston-1]
 gi|49238142|emb|CAF27350.1| hypothetical protein BH05420 [Bartonella henselae str. Houston-1]
          Length = 322

 Score =  124 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 73/316 (23%), Positives = 128/316 (40%), Gaps = 7/316 (2%)

Query: 7   TSLSDFIKLLTTYFVLIIFCI--VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
             ++   K + T F ++   I  + +    S    + I  T+NG+ IT+ DI +R A L+
Sbjct: 5   NYMNKLKKHILTLFCIVPLSISNLLVSEIPSTFAQTVIVVTVNGKPITNYDIQRRAAFLR 64

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
           LQ+  G L + A  ELI E LK  EI++  I   +N V   F   A    ++ +  +  L
Sbjct: 65  LQQKQGNLSEQAKNELINEVLKNIEIKRRNIEVSNNEVESAFKNFAAQNNMTVDQLNQIL 124

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
               I   HFK Y+  Q  W  +V   +  + G +  +    +              T+ 
Sbjct: 125 IDNDITVQHFKDYIRGQLGWGRLVNARYQAETGMISEQEAVRRILKNGGVKPSTNEYTLQ 184

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             I       +  + +R +    +     + C    K A  I DV++      LE  L  
Sbjct: 185 RIIFVIPAHRRSEIFERRQREANNFRAHFQGCANTSKQAKGILDVTVRNLGKFLEPQLPR 244

Query: 245 QFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK----IEK 299
           +++  ++ +     T    T  G+E IA+C  + +  +   +   S Q+   K    +E 
Sbjct: 245 EWEQAIRITPAGKMTQLQETADGIEAIAVCKIKRVSDDYVARLIFSLQDNKQKSPQELEI 304

Query: 300 HEAEYVKKLRSNAIIH 315
              +Y+K+LR  A I 
Sbjct: 305 LSEKYLKELRQVARIK 320


>gi|254362982|ref|ZP_04979046.1| peptidylprolyl isomerase [Mannheimia haemolytica PHL213]
 gi|153094638|gb|EDN75442.1| peptidylprolyl isomerase [Mannheimia haemolytica PHL213]
          Length = 314

 Score =  124 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 53/316 (16%), Positives = 111/316 (35%), Gaps = 17/316 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +KL+ + F + +  +   ++  + A   R+   +N   I    + +   +L  +K     
Sbjct: 1   MKLVKSLFAVAVATMS--LTQTAHAFEERVVALVNDTPIMQSQVQR---VLGKKKATETA 55

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           ++ A+ ++I + L +Q ++++G+      VN      A   G++       LD QGI   
Sbjct: 56  QRAAIDQVIDDMLVQQAMKEAGVKVSPAAVNQAVENVAIQNGITYGQLLDALDYQGITLE 115

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI----------TVREYLIRT 182
            FK+ +A Q     V              ++ A  +++             + +E+ I  
Sbjct: 116 QFKRNIAQQMAMEQVRHISISKSIQVAPQQVQALAKELMAKDKAAGKLKTVSGKEHRISH 175

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
           +L          Q   +      + +  ++  +                G   +      
Sbjct: 176 ILLKTNPILNDAQAKAKLSSLTTDINSGKISFEEAAKTHSVDYASGADGGDLGFNFLEIY 235

Query: 243 HPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKH 300
            P F N+  K   N  + P+ +Q G   + + D R+              Q    + E+ 
Sbjct: 236 DPAFANVASKIKPNQISAPFKSQFGWHILKVTDTRNGDRTEDAYHQRAYQQLVNKQAEEA 295

Query: 301 EAEYVKKLRSNAIIHY 316
             ++VK LR  A I Y
Sbjct: 296 SKDWVKALRKTANIQY 311


>gi|303256196|ref|ZP_07342212.1| peptidyl-prolyl cis-trans isomerase SurA [Burkholderiales bacterium
           1_1_47]
 gi|331001252|ref|ZP_08324878.1| SurA protein [Parasutterella excrementihominis YIT 11859]
 gi|302860925|gb|EFL84000.1| peptidyl-prolyl cis-trans isomerase SurA [Burkholderiales bacterium
           1_1_47]
 gi|329568979|gb|EGG50775.1| SurA protein [Parasutterella excrementihominis YIT 11859]
          Length = 453

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 94/292 (32%), Gaps = 16/292 (5%)

Query: 36  WAMSSRIRTTINGEVITDGDISKRI--------ALLKLQKINGELEKIAVQELIVETLKK 87
                RI   +N +VIT+  + +RI                   L    +  +I+E + +
Sbjct: 44  PVPVDRIAAVVNHDVITEIQLQQRIHQVATNLRRRNIPLPPMDNLRDQTLDRMILERIIE 103

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           Q+   +GI  D N +N    Q A N GL+       L   GI    FK  +  + +   +
Sbjct: 104 QKARDTGIRIDDNMLNGAIEQIATNNGLTVPQLEKKLAADGISVPSFKSEIRSELLTQRL 163

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLI--RTVLFSIPDNKLQNQGFVQKRIKDA 205
            + D   K    E EI    +       R      R V+    +         Q+    A
Sbjct: 164 RERDVDDKIQIPESEIDQYLKDQSGPGKRMEYRLSRIVISFPENPTKAEVEAAQRTASRA 223

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQK 265
            E   R         K++     +  G   ++    L P     L+  +     P     
Sbjct: 224 LEQAQRGADFSQLAAKYSVTPEAMEGGVMGWVPAGKLPPFVVQALQNHKAGDIIPLQAGN 283

Query: 266 GVEYIAICDKRDLGGE------IALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             + + +   RD G +           ++  + +    EK   + + +++S 
Sbjct: 284 SFQILKLTGVRDPGEQAQQGVRQTHVRHIMMRPSNVTPEKVVIQRLNEIKSR 335



 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/281 (10%), Positives = 84/281 (29%), Gaps = 14/281 (4%)

Query: 46  INGEV-ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           ++ ++ I + +I +    LK Q   G+  +  +  +++   +     +      + +   
Sbjct: 168 VDDKIQIPESEIDQ---YLKDQSGPGKRMEYRLSRIVISFPENPTKAEVEAAQRTASRAL 224

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY-------G 157
              Q   +    A  +S   +    G   +     +       ++N              
Sbjct: 225 EQAQRGADFSQLAAKYSVTPEAMEGGVMGWVPAGKLPPFVVQALQNHKAGDIIPLQAGNS 284

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDC 216
              +++   +   +               +  + +  +  V +R+ + +    +      
Sbjct: 285 FQILKLTGVRDPGEQAQQGVRQTHVRHIMMRPSNVTPEKVVIQRLNEIKSRLDKGDGDFQ 344

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDK 275
                 ++       G   +L   D+ P+ +    K S    + P  T  G     + D+
Sbjct: 345 TLARLHSADPSGTRGGDLGWLYPGDVPPEMEQQLDKLSVGEISEPIRTPYGWHIFQVLDR 404

Query: 276 R-DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           R   G     +          K+     ++ ++LRS A + 
Sbjct: 405 RTKSGINERQREQAREALREQKLGDAVLDWERRLRSEAYVE 445


>gi|224827238|ref|ZP_03700332.1| SurA domain protein [Lutiella nitroferrum 2002]
 gi|224600527|gb|EEG06716.1| SurA  domain protein [Lutiella nitroferrum 2002]
          Length = 428

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 105/301 (34%), Gaps = 16/301 (5%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI--------NGELEKIAVQEL 80
                       RI   +N   IT+ D+ KRI    ++             L +  ++++
Sbjct: 17  GTAYAAPVRAVDRIVAVVNKSAITESDLQKRIKETVMELEARKVTPPAPDVLARQVLEQM 76

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I E ++ Q    +G+    + +     + A    L+ E   + L K+G+  ++F++ +  
Sbjct: 77  ITEEVQVQYATSNGVRVSDDELQQTLERLASQNKLTLEAMKAQLAKEGVTFDNFREQIRR 136

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ- 199
           Q +   + + +   +    + E+    +  +     EY +  +L S+P+     Q   Q 
Sbjct: 137 QILLSRLKEREVESRVNVSDTEVEQVLKSEQTANRSEYRLANILVSVPERADAKQIDAQS 196

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTT 258
           ++   A                ++   + +  G   +   S L   F + L      + T
Sbjct: 197 QKAHKALAELDAGQPFAKVAAAYSDAPNGLKGGDLGWRPASSLPLDFTKLLETMQPGSHT 256

Query: 259 NPYVTQKGVEYIAICDKRDLGGEIALK----AYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
               +Q+G     + +KR     + ++     ++  +      E      + ++R    I
Sbjct: 257 TVIRSQQGFFIFQLQEKRSADTPLIVEQYHVRHILLRTNEAVSEADAKTRLLQIRDR--I 314

Query: 315 H 315
            
Sbjct: 315 E 315



 Score = 93.2 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 86/280 (30%), Gaps = 19/280 (6%)

Query: 45  TINGEVITDGDISKRIALLKLQKING--------ELEKIAVQELIVETLKKQEIEKSGIT 96
            +N   ++D ++ + +   +    +          + + A  + I    +K     + + 
Sbjct: 151 RVN---VSDTEVEQVLKSEQTANRSEYRLANILVSVPERADAKQIDAQSQKAHKALAELD 207

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
                            GL   D           D               V+++      
Sbjct: 208 AGQPFAKVAAAYSDAPNGLKGGDLGWRPASSLPLDFTKLLETMQPGSHTTVIRSQQGFFI 267

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
                ++   +     + V +Y +R +L     N+  ++   + R+    +   R     
Sbjct: 268 ----FQLQEKRSADTPLIVEQYHVRHILL--RTNEAVSEADAKTRLLQIRDRIERGASFE 321

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDK 275
              + ++    +   G   ++   D  P F+  +     N  + P  +  G   I +  K
Sbjct: 322 EMAKLYSEDASNTRGGDLGWVNLGDTVPTFEQAMTSLPLNTVSQPVRSPFGWHLIKVEGK 381

Query: 276 RDLGGEIALKA-YLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           R        +   +  Q    KI++   ++V++LR +A +
Sbjct: 382 RTQDVAQDREKMMVKQQIRARKIDEAYLDWVRQLRDSAFV 421


>gi|74318356|ref|YP_316096.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiobacillus
           denitrificans ATCC 25259]
 gi|121956487|sp|Q3SGF9|SURA_THIDA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|74057851|gb|AAZ98291.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 436

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 90/290 (31%), Gaps = 17/290 (5%)

Query: 40  SRIRTTINGEVITDGDISKR----IALLKLQK----INGELEKIAVQELIVETLKKQEIE 91
           + I   +N EVIT  +++KR    +  L  Q         LEK  ++ ++ E   +Q   
Sbjct: 36  NHIVAVVNDEVITRQELAKRYDEVVRNLSRQNTPLPPRNVLEKQLLERMVTELALQQHAR 95

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
            +G+  D   V     + A    L      + L+K+G   +  +  +  + +     + D
Sbjct: 96  NTGVRADPTLVERALQRIAAQNKLDMAGLQAALEKEGQTLDGMRNTIRNELLIARARERD 155

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
              +    + EI    Q             + +         +   +++R   AE+   +
Sbjct: 156 VDNRISVSDAEIDGYLQTQAQQGAETEYNFSHILVSVPE-NASPEQIRERRARAEDILAQ 214

Query: 212 LPKDCNKL---EKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGV 267
           L    +        +     +  G   +     L   F + L        +    +  G 
Sbjct: 215 LAAGADFAQLSASHSDAPDALKGGNFGWRASGKLPALFVEALKPMQPGEISPLLRSGNGF 274

Query: 268 EYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             + + DKR     L        ++  +      E      + +L+    
Sbjct: 275 HILKLVDKRGLDATLSVTQTHARHILIKTNEITSEADARNRLLQLKERID 324



 Score = 99.0 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 45/139 (32%), Gaps = 2/139 (1%)

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
                   I  N++ ++   + R+   +E      K        +        G   ++ 
Sbjct: 293 QTHARHILIKTNEITSEADARNRLLQLKERIDNGVKFDELARLHSEDASASKGGDLGWIN 352

Query: 239 ESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL-SAQNTPTK 296
             D  P F+  +        + P  +  G   I + ++RD       +  +        K
Sbjct: 353 PGDTVPDFEKAMNALQPGEVSAPVQSPFGWHLIQVLERRDQDVTQERQKLMARQAIRERK 412

Query: 297 IEKHEAEYVKKLRSNAIIH 315
            E+   ++V+++R  A + 
Sbjct: 413 AEEAFQDWVRQIRDAAYVE 431


>gi|83720338|ref|YP_441133.1| survival protein SurA [Burkholderia thailandensis E264]
 gi|257140205|ref|ZP_05588467.1| survival protein SurA, putative [Burkholderia thailandensis E264]
 gi|122070640|sp|Q2T116|SURA_BURTA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|83654163|gb|ABC38226.1| survival protein SurA, putative [Burkholderia thailandensis E264]
          Length = 448

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/336 (11%), Positives = 107/336 (31%), Gaps = 31/336 (9%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAM-------SSRIRTTINGEVITDGDISKRIA 61
           +   ++       L+   I    S  + A+       +  +   +N +VIT  ++ +R+ 
Sbjct: 1   MKKTLRFAAVAAGLVASLITVAPSASAQALRAQGASLADEVVAVVNNDVITGRELDQRVG 60

Query: 62  LLKLQKING--------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
           L+  +            +L    + ++++E ++ Q  +  GI  D+ TV     + A+  
Sbjct: 61  LIARRLQQQKAPVPPTDQLRAQVLNQMVLERIQVQRAKDDGIVVDNATVQATLGRLAQAN 120

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
           G+  + + + ++ QG+  + F +    + +   + + +   K    + E+ +     +  
Sbjct: 121 GMPLDQYKARIEAQGVPWDLFVRDARTELMLSKLREKEVDSKITVSDAEVASYIASQRGP 180

Query: 174 TVREYLIRTVLFSIPDNKLQNQ-----GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
                    +                    +K     +++           +  +     
Sbjct: 181 NAGAQQDLRLEHIFVKAPTNAPQADIDAAQKKAEGLLQQALASGTNFERLAKSQSEADDA 240

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP--YVTQKGVEYIAICDKR----DLGGEI 282
              G   +   S L     + + K +    NP       G E + + D+R          
Sbjct: 241 KKGGDLGFKAPSSLPSDVVDAVSKLRPGEVNPTLIRVPDGFEIVRLVDRRASQNPAASPK 300

Query: 283 ALKAYLSAQNT---PTKIEKHEAEYVKKLRSNAIIH 315
            ++ ++          K E    + +  +R    I 
Sbjct: 301 IVQTHVRHILLRVGEGKSESQARQQLIDIRRQ--IE 334



 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 16/156 (10%), Positives = 54/156 (34%), Gaps = 2/156 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +     +    + +          +   + +++   ++++ D                 +
Sbjct: 287 VDRRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDIRRQIEAGGDFEKFARTY 346

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           +        G   ++   +  P+F+  +        +NP  T+ G   I +  +RD  G 
Sbjct: 347 SQDGSASQGGDLGWISPGETVPEFERAMNALQDGQVSNPVRTEYGYHLIQVLGRRDAEGS 406

Query: 282 IALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +  +  +        K E+  ++++++LR ++ +  
Sbjct: 407 VQQQMDIARQAIGQRKAEQAYSDWLRELRDSSYVQI 442


>gi|167835488|ref|ZP_02462371.1| survival protein SurA, putative [Burkholderia thailandensis MSMB43]
          Length = 448

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/336 (11%), Positives = 106/336 (31%), Gaps = 35/336 (10%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMS-----------SRIRTTINGEVITDGDISKRIA 61
           +K    +  +    +  +++    A +             +   +N +VIT  ++ +R+ 
Sbjct: 1   MKKTLRFAAVASGLVASLITVAPPASAQALRAQGASLADEVVAVVNNDVITGRELDQRVG 60

Query: 62  LLKLQKING--------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
           L+  +            +L    + ++++E ++ Q  +  GI  D+ TV     + A+  
Sbjct: 61  LIARRLQQQKAPVPPTDQLRAQVLNQMVLERIQVQRAKDDGIVVDNATVQATLGRLAQAN 120

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
           G+  + + + ++ QG+  + F +    + +   + + +   K    + E+ +     +  
Sbjct: 121 GMPLDQYKARIEAQGVPWDLFVRDARTELMLSKLREKEVDSKITVSDAEVASYIASQRGP 180

Query: 174 TVREYLIRTVLFSIPDNKLQNQ-----GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
                    +                    +K     +++           +  +     
Sbjct: 181 NAGSQQDLRLEHIFVKAPTNAPQADIDAAQKKADGLLQQALASGANFERLAKSQSEADDA 240

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP--YVTQKGVEYIAICDKR----DLGGEI 282
              G   +   S L     + + K +    NP       G E + + ++R          
Sbjct: 241 KKGGDLGFKSPSSLPSDVVDAVSKLRPGEVNPALIRVPDGFEIVRLVERRASQNPAASPK 300

Query: 283 ALKAYLSAQNT---PTKIEKHEAEYVKKLRSNAIIH 315
            ++ ++          K E    + +  +R    I 
Sbjct: 301 IVQTHVRHILLRVGEGKSESQARQQLIDIRRQ--IE 334



 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 16/156 (10%), Positives = 54/156 (34%), Gaps = 2/156 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +     +    + +          +   + +++   ++++ D                 +
Sbjct: 287 VERRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDIRRQIEAGGDFEKFARTY 346

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           +        G   ++   +  P+F+  +        +NP  T+ G   I +  +RD  G 
Sbjct: 347 SQDGSASQGGDLGWISPGETVPEFERAMNTLQDGQVSNPVRTEYGYHLIQVLGRRDAEGS 406

Query: 282 IALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +  +  +        K E+  ++++++LR ++ +  
Sbjct: 407 VQQQMDIARQAIGQRKAEQAYSDWLRELRDSSYVQI 442


>gi|288958015|ref|YP_003448356.1| peptidyl-prolyl cis-trans isomerase [Azospirillum sp. B510]
 gi|288910323|dbj|BAI71812.1| peptidyl-prolyl cis-trans isomerase [Azospirillum sp. B510]
          Length = 485

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 50/308 (16%), Positives = 104/308 (33%), Gaps = 34/308 (11%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKIN-------GELEKIAVQELIVETLKKQEIE 91
           S  I   +N EV++  D++ RI +  L             L    ++ LI E L+ QE +
Sbjct: 53  SEGIAAVVNDEVVSVSDVNARIRMALLNAGGAANPETIQRLTPQVMRLLIDERLQMQEAK 112

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
           + G+T  ++ ++    + A    ++ +     L +Q +  +  K  +     W  V++  
Sbjct: 113 RQGVTVSASEIDDAIKRIAEQNRMNNQQLQEMLKRQNVPVSTLKDQIRALLAWQKVMQRR 172

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
              +    E E+ A  +++K    +   +   +F   D+  Q+    +   +  EE + R
Sbjct: 173 IRQEVVVGEDEVDAAMERLKANIGKPEYLVAEIFLAVDSPDQDDEVRRNAERLVEEVK-R 231

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYI 270
                    +F+      S G   ++   +L P+  + L        + P  T  G   +
Sbjct: 232 GGNFAALARQFSQSAGAASGGDLGWVRSGELSPEVDKALSGMRGGQLSAPVRTATGYHIL 291

Query: 271 AICDKRDLGGE-------------------------IALKAYLSAQNTPTKIEKHEAEYV 305
            +  +R  G                                 +       +  K   E  
Sbjct: 292 LVRGQRPFGSSGGEVPMPAAQPAAPRPQPRPDLAKATVNMKQIILPIESKEQAKEVKEQA 351

Query: 306 KKLRSNAI 313
           +KLR +  
Sbjct: 352 EKLRKSIK 359



 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/144 (12%), Positives = 41/144 (28%), Gaps = 22/144 (15%)

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS 253
                 K +K+  E   +  K C   +  A +      G    +   D+ P  QNL    
Sbjct: 339 ESKEQAKEVKEQAEKLRKSIKSCGDFQARAKETGMPESGDMGTMRVKDMAPGLQNLALGI 398

Query: 254 Q-NNTTNPYVTQKGVEYIAICDK---------------------RDLGGEIALKAYLSAQ 291
                +   ++      + +C +                          ++  +  +  +
Sbjct: 399 PLGQASPVLMSPAAAVILIVCKRDVPMIQPPPEAQPAPPPPAPTPIQEAKLPGRDEIERE 458

Query: 292 NTPTKIEKHEAEYVKKLRSNAIIH 315
               + E     Y++ LR +A + 
Sbjct: 459 LVNERSELLSRRYLRDLRRSAFVE 482


>gi|307946740|ref|ZP_07662075.1| SurA N- domain family [Roseibium sp. TrichSKD4]
 gi|307770404|gb|EFO29630.1| SurA N- domain family [Roseibium sp. TrichSKD4]
          Length = 291

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 63/290 (21%), Positives = 119/290 (41%), Gaps = 3/290 (1%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--ELEKIAVQELIVETLKK 87
           +  +     S+ I+  +NG+ IT  DI++R  L++L + +      + A +ELI + L+ 
Sbjct: 1   MGGFGLTPASAGIKVVVNGKPITTYDINQRAKLIRLIQRSSVAASRREAEKELIDDRLRL 60

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           +E  + G+      VN  +   ARN  L+    ++ L + G+     K  L  Q  +   
Sbjct: 61  EEASRIGVKISEAEVNNAYANIARNVKLTPAKLTAGLRQSGVNPQTLKDRLKAQLAFQQS 120

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           V+  F  +    E +I    +K  +      +   +   I     ++    + +      
Sbjct: 121 VRRRFNSQVDVDESDIINALRKSDDENKNISVEYNLQRVIVVVPKKSSKGFRNKRLAESN 180

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKG 266
           S  +    C+       K  +V +      LE++L     + + K +    T+P  T+ G
Sbjct: 181 SIRKAVTACDSAGAVFGKYSEVVVQPIGRRLETELPEPMRKEISKTTPGKLTSPRKTEVG 240

Query: 267 VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            E IA+C KR++  +IA +  L  +    + E     Y+  LR  A I Y
Sbjct: 241 FEMIAVCGKREIASDIAARTELENELRAKEGEALTRRYLMDLRRRASIVY 290


>gi|167579883|ref|ZP_02372757.1| survival protein SurA, putative [Burkholderia thailandensis TXDOH]
          Length = 448

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/336 (11%), Positives = 107/336 (31%), Gaps = 31/336 (9%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAM-------SSRIRTTINGEVITDGDISKRIA 61
           +   ++       L+   I    S  + A+       +  +   +N +VIT  ++ +R+ 
Sbjct: 1   MKKTLRFAAVAAGLVASLITVAPSASAQALRAQGASLADEVVAVVNNDVITGRELDQRVG 60

Query: 62  LLKLQKING--------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
           L+  +            +L    + ++++E ++ Q  +  GI  D+ TV     + A+  
Sbjct: 61  LIARRLQQQKAPVPPTDQLRAQVLNQMVLERIQVQRAKDDGIVVDNATVQATLGRLAQAN 120

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
           G+  + + + ++ QG+  + F +    + +   + + +   K    + E+ +     +  
Sbjct: 121 GMPLDQYKARIEAQGVPWDLFVRDARTELMLSKLREKEVDSKITVSDAEVASYIASQRGP 180

Query: 174 TVREYLIRTVLFSIPDNKLQNQ-----GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
                    +                    +K     +++           +  +     
Sbjct: 181 NAGAQQDLRLEHIFVKAPTNAPQTDIDAAQKKAEGLLQQALASGTNFERLAKSQSEADDA 240

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP--YVTQKGVEYIAICDKR----DLGGEI 282
              G   +   S L     + + K +    NP       G E + + D+R          
Sbjct: 241 KKGGDLGFKAPSSLPSDVVDAVSKLRPGEVNPTLIRVPDGFEIVRLVDRRASQNPAASPK 300

Query: 283 ALKAYLSAQNT---PTKIEKHEAEYVKKLRSNAIIH 315
            ++ ++          K E    + +  +R    I 
Sbjct: 301 IVQTHVRHILLRVGEGKSESQARQQLIDIRRQ--IE 334



 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 16/156 (10%), Positives = 55/156 (35%), Gaps = 2/156 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +     +    + +          +   + +++   ++++ D                 +
Sbjct: 287 VDRRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDIRRQIEAGGDFEKFARTY 346

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           +        G   ++   +  P+F+  +    +   +NP  T+ G   I +  +RD  G 
Sbjct: 347 SQDGSASQGGDLGWISPGETVPEFERAMNALQEGQVSNPVRTEYGYHLIQVLGRRDAEGS 406

Query: 282 IALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +  +  +        K E+  ++++++LR ++ +  
Sbjct: 407 VQQQMDIARQAIGQRKAEQAYSDWLRELRDSSYVQI 442


>gi|325526673|gb|EGD04205.1| SurA domain-containing protein [Burkholderia sp. TJI49]
          Length = 452

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/304 (13%), Positives = 102/304 (33%), Gaps = 24/304 (7%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------LEKIAVQELIVETL 85
           +   ++  +   +N +VIT  ++ +R+ L+  +             L    + ++++E +
Sbjct: 34  QGAQLADEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPTDQLRAQVLNQMVLERI 93

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
           + Q+ +  GI  D  TV     + A+  G++ + + + L+ QG+  + F      + +  
Sbjct: 94  QVQKAKDDGIRIDDATVQATLQRLAQANGMTLDQYRARLESQGVPWSIFTADARTELMLS 153

Query: 146 DVVKNDFMLKYGNLEMEIPAN----KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
            + + +   K    + E+       +    +           + +  +         QK+
Sbjct: 154 KLREREVDGKITVSDAEVANYIASQRGPNASQQQDLRFQHIFIKAPTNAPQTEIEAAQKK 213

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP- 260
            +   +            +  +        G   +   S L  +  +   K +    NP 
Sbjct: 214 AEALLQQATSGADFEKLAKNNSEASDAKKGGDLGFKSPSALPAEVVDAASKLRPGQVNPT 273

Query: 261 -YVTQKGVEYIAICDKRDLGGEIALK--------AYLSAQNTPTKIEKHEAEYVKKLRSN 311
                 G E + + D+R   G  A           ++  +    K E    + +  +R+ 
Sbjct: 274 LIRVPDGFEIVRLVDRRQSQGATAAAPKIVQTHVRHILLRVGEGKSEGQARQQLLDIRNQ 333

Query: 312 AIIH 315
             I 
Sbjct: 334 --IE 335



 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/288 (11%), Positives = 95/288 (32%), Gaps = 21/288 (7%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQ-ELIV--------ETLKKQEIEKSGIT 96
           ++G+ IT  D ++    +  Q+     ++  ++ + I         +T  +   +K+   
Sbjct: 160 VDGK-ITVSD-AEVANYIASQRGPNASQQQDLRFQHIFIKAPTNAPQTEIEAAQKKAEAL 217

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD------NHFKQYLAIQSIWPDVVKN 150
               T    F + A+N   +++                         L    + P +++ 
Sbjct: 218 LQQATSGADFEKLAKNNSEASDAKKGGDLGFKSPSALPAEVVDAASKLRPGQVNPTLIR- 276

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
                +  + +      Q       +          +   + +++G  ++++ D      
Sbjct: 277 -VPDGFEIVRLVDRRQSQGATAAAPKIVQTHVRHILLRVGEGKSEGQARQQLLDIRNQIE 335

Query: 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEY 269
                      ++        G   ++   +  P+F+  +        + P  T+ G   
Sbjct: 336 AGGDFAKFARTYSQDGSASQGGDLGWISPGETVPEFERAMNNLQDGQISQPVRTEYGYHL 395

Query: 270 IAICDKRDLGGEIALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           I +  +RD  G +  +  +        K E+  A+++++LR ++ + Y
Sbjct: 396 IQVIGRRDAEGSVQQQMDIARQAIGQRKAEQAYADWLRELRDSSYVQY 443


>gi|238782669|ref|ZP_04626699.1| Chaperone surA [Yersinia bercovieri ATCC 43970]
 gi|238716329|gb|EEQ08311.1| Chaperone surA [Yersinia bercovieri ATCC 43970]
          Length = 434

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 107/296 (36%), Gaps = 16/296 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--------EL 72
           +++   +    ++ +     ++   ++  V+   D+   +  +KL              L
Sbjct: 7   LILGLVVCANTAFAAPQEVDKVAAVVDNGVVLQSDVDGLLQSVKLNAQQAGQQVPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI+++++ Q  +K GIT     ++      A    ++     S L   G+  +
Sbjct: 67  RHQILERLIMDSIQLQMAKKMGITVSDEALDKAIADIAAQNRMTPAQMRSRLAADGLNYD 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            +++ +  + +  +V  N+   +   L  E+ +  +++ N T  +  +      IP  + 
Sbjct: 127 TYREQIRKEMLTSEVRNNEVRRRITILPQEVESLAKQIGNQTSGDAELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            +Q  V +  + A +    +    +        ++    +  G+  +    +L   F + 
Sbjct: 187 PSQQQVDQAEELANKLVSDIKGGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAEK 246

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKH 300
           L   ++ +   P  +  G   + + D R     +        ++  + +P   +  
Sbjct: 247 LQSANKGDVVGPIRSGVGFHILKVNDIRGADKTVSVTEVHARHILLKPSPVMTDDQ 302



 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 55/168 (32%), Gaps = 4/168 (2%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                G   +++   +   K ++V E   R +L         +Q   +     A+    +
Sbjct: 259 IRSGVGFHILKVNDIRGADKTVSVTEVHARHILLKPSPVMTDDQARAKLAAAAADIKSGK 318

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEY 269
                N  ++ +      V  G   +       P F++  +K  +   + P  +  G   
Sbjct: 319 -TTFANIAKEISQDPGSAVQGGDLGWASPDIYDPAFRDALMKLQKGEISAPVHSSFGWHL 377

Query: 270 IAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           I + D R +   + A K          K  +    ++++ R+ A +  
Sbjct: 378 IQVVDTRQVDKTDAAQKDRAYRMLFSRKFAEEAQTWMQEQRAAAYVKI 425


>gi|307825062|ref|ZP_07655283.1| SurA domain protein [Methylobacter tundripaludum SV96]
 gi|307733810|gb|EFO04666.1| SurA domain protein [Methylobacter tundripaludum SV96]
          Length = 434

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 107/313 (34%), Gaps = 15/313 (4%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE-- 71
            +  T  V ++  ++         +   I   +  +VI + ++ K +A+++ +       
Sbjct: 6   NIKRTIVVALLCNLLFGSFLVHAEVLDTIIAVVEEDVILERELQKEVAVIEQRIQQSNAA 65

Query: 72  ------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
                 L K  ++++IV+ L++Q  EK+GIT     +N      AR   +  E F + L+
Sbjct: 66  IPPAYVLRKQVLEKMIVDKLQRQLAEKAGITVSEEMLNSSAADIARRNNMDIEQFRAELE 125

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
            QGI    F   +  + I   +   +   +    + E+    +    I            
Sbjct: 126 GQGISYQSFLDNMRNEIIINQLRGREIGGRIKVTDREVEHYMETQDKIGEESTQYHLGHI 185

Query: 186 SIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
            I   +  +   +QK +  AE                   +   + +  G   +   S++
Sbjct: 186 LIAVKEGASSTEIQKAMSKAEGIVGSLRGGQDFSQTAISDSDDANALKGGDLGWRTLSEV 245

Query: 243 HPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI---E 298
              F   + +  Q + + P  +  G   + + + +     +  K  +      T     +
Sbjct: 246 PTLFVNEIRQMKQGDVSEPIRSPSGFHIVKMLELKGTDNHMITKTKVRHILIKTNELVDD 305

Query: 299 KHEAEYVKKLRSN 311
               + +  L++ 
Sbjct: 306 AEANKRLLALKAR 318



 Score = 84.0 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 3/140 (2%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLE 239
           +     I  N+L +     KR+   +                +      +  G   ++  
Sbjct: 291 KVRHILIKTNELVDDAEANKRLLALKARIADGDDFAALARAHSDDKGSALKGGSLDWVGP 350

Query: 240 SDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAICDKRDLGGEIA-LKAYLSAQNTPTKI 297
            DL   F+  + K   N  ++P  TQ G   I +  + +        K  +       KI
Sbjct: 351 GDLVKPFEEAMVKLGINEVSDPVQTQFGWHIIQVLGRENKDDSSEFKKNLVREAIRKRKI 410

Query: 298 EKHEAEYVKKLRSNAIIHYY 317
           E+    +V++LR  A +  Y
Sbjct: 411 EEETELWVRRLRDEAFVEIY 430


>gi|292492134|ref|YP_003527573.1| SurA domain protein [Nitrosococcus halophilus Nc4]
 gi|291580729|gb|ADE15186.1| SurA domain protein [Nitrosococcus halophilus Nc4]
          Length = 425

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 42/312 (13%), Positives = 106/312 (33%), Gaps = 16/312 (5%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK-------- 67
           +    V ++     + S+ +  +  RI   +N EV+ + ++ + +  ++ Q         
Sbjct: 1   MRRLLVAVLAVFWSMGSFGAT-ILDRIVAVVNEEVVLESELEQMVHTVQEQLVAKGTPLP 59

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
            +  LE+  ++ L+++ L+ Q   ++GI     T+N    + A + GL+   F   L++ 
Sbjct: 60  PDYMLEQQVLERLVMQQLQLQLAARTGIRVGDETLNQALRRIAEDNGLTLSQFRDVLEQD 119

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
           G     F++ +  + I   + K +   +    E EI       +    ++   +     I
Sbjct: 120 GYNFPSFRENIRRELIISQLHKREVNDRVTVSEAEIDNFLTTQRKRGNQDVQYQLGHVLI 179

Query: 188 PDNKLQNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
              +  +   +Q      E+   +             ++     +  G   +     L  
Sbjct: 180 AVPEAASPEQLQAARAKGEQLLRQLREGMDFQKAALAYSDGQQALEGGNLGWRKMGQLPT 239

Query: 245 QF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKH 300
            F   + K      +    +  G   + + D+R             ++  +       + 
Sbjct: 240 LFVDVVPKLQVGEISELIRSPSGFHIVKLLDRRGEEQQVVTQTHARHILLRTDELTSNRD 299

Query: 301 EAEYVKKLRSNA 312
               + +LR  A
Sbjct: 300 ARLRLGQLRQRA 311



 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 89/283 (31%), Gaps = 17/283 (6%)

Query: 46  INGEV-ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           +N  V +++ +I      L  Q+  G   +    +L    +   E         +     
Sbjct: 144 VNDRVTVSEAEIDN---FLTTQRKRGN--QDVQYQLGHVLIAVPEAASPEQLQAARAKGE 198

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
             ++  R      +   ++ D Q   +     +  +  +    V     L+ G +   I 
Sbjct: 199 QLLRQLREGMDFQKAALAYSDGQQALEGGNLGWRKMGQLPTLFVDVVPKLQVGEISELIR 258

Query: 165 ANKQKMKNI--------TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
           +                             +  ++L +    + R+    +  L+     
Sbjct: 259 SPSGFHIVKLLDRRGEEQQVVTQTHARHILLRTDELTSNRDARLRLGQLRQRALQGDDFS 318

Query: 217 NKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICD 274
              +  +      +  G   ++    + P+F+ +++       + P+ TQ G   + I +
Sbjct: 319 ELAQAHSDDKASALKGGDLGWISPGQMIPRFEEVMRSLDPGEISKPFQTQFGWHVVQILN 378

Query: 275 KRDLG-GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +R     E   +     +    KIE+    ++++LR  A + Y
Sbjct: 379 RRQQNMTEEFNRNRARMEIRQRKIEEELENWLRQLRDEAYVEY 421


>gi|251788205|ref|YP_003002926.1| peptidyl-prolyl cis-trans isomerase SurA [Dickeya zeae Ech1591]
 gi|247536826|gb|ACT05447.1| Peptidylprolyl isomerase [Dickeya zeae Ech1591]
          Length = 430

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 103/303 (33%), Gaps = 16/303 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   +   +++ +    ++I   ++  V+ + DI+  +  +KL              L
Sbjct: 7   LVLGLALSANMAFAAPQEVNKIAAVVDNSVVLESDINSLLQSVKLNAQEAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A    +S +   S L  +G+  +
Sbjct: 67  RHQILERLIMDNIILQMAQKMGVQVTDEQLDRSIANIAAQNRMSIDQLRSRLTAEGVSFD 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +    I  DV  ++   +   L  E+ +  Q++ +       +      +P  + 
Sbjct: 127 TYRGQIRKDMIIADVRNSEVRRRVTVLPQEVDSLAQQLASQGANGPEVNLSQILLPLPEN 186

Query: 193 QNQGFVQKRIKDAE---ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
             Q  V K    A    +   +          +++    +  G+  +    +L   F + 
Sbjct: 187 PTQDQVDKAESLANRLVKEASQGADFGKLAITYSADPQALKGGQMGWGRPQELPTLFAER 246

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRD----LGGEIALKAYLSAQNTPTKIEKHEAEY 304
           L    +     P  +  G   + + D R     +        ++    +    +      
Sbjct: 247 LTNPQKGQIVGPIRSGVGFHILRVNDTRGGAQAVSVTEVHARHILLTTSVVMNDAQARAK 306

Query: 305 VKK 307
           +++
Sbjct: 307 LEE 309



 Score = 85.5 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/309 (12%), Positives = 86/309 (27%), Gaps = 26/309 (8%)

Query: 28  VPIVSYKSWAMSSRIRTTI-NGEV-----ITDGDISKRIALLKLQKINGELEKIAVQELI 81
           V   +Y+       I   + N EV     +   ++      L  Q  NG         L 
Sbjct: 123 VSFDTYRGQIRKDMIIADVRNSEVRRRVTVLPQEVDSLAQQLASQGANGPEVN-----LS 177

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
              L   E         + ++    V+ A       +   ++             +   Q
Sbjct: 178 QILLPLPENPTQDQVDKAESLANRLVKEASQGADFGKLAITYSADPQALKGGQMGWGRPQ 237

Query: 142 SIWPDVVKND-----------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
            +     +                  G   + +   +   + ++V E   R +L +    
Sbjct: 238 ELPTLFAERLTNPQKGQIVGPIRSGVGFHILRVNDTRGGAQAVSVTEVHARHILLTTSVV 297

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL 249
               Q    K  + A + +       N  ++ +         G   +       P F++ 
Sbjct: 298 MNDAQA-RAKLEEVAGQIKSGKLSFANAAKQLSQDPGTANQGGDLGWASPEMYDPAFRDA 356

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
             +  +   + P  +  G   I + D R++   + A K          K  +    ++++
Sbjct: 357 LTQLKKGEISTPVHSSFGWHLIQLLDTREVDKTDAAQKERAYRMLFNRKFAEEAQTWMQE 416

Query: 308 LRSNAIIHY 316
            R+ A +  
Sbjct: 417 KRAAAYVKI 425


>gi|161618653|ref|YP_001592540.1| chaperone surA precursor [Brucella canis ATCC 23365]
 gi|260566737|ref|ZP_05837207.1| SurA domain-containing protein [Brucella suis bv. 4 str. 40]
 gi|161335464|gb|ABX61769.1| Chaperone surA precursor [Brucella canis ATCC 23365]
 gi|260156255|gb|EEW91335.1| SurA domain-containing protein [Brucella suis bv. 4 str. 40]
          Length = 318

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 67/317 (21%), Positives = 130/317 (41%), Gaps = 9/317 (2%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +  +      +L     L     V   ++ +     ++   ++G  IT+ DI  R+A LK
Sbjct: 1   MMFARPLIASMLGAAVCLTALGTVTAPAFAAGESEVKVI--VSGNAITNSDIKHRMAFLK 58

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
           LQ+ +G L ++A  EL  E LK+ E++  GI      V+  +   A    ++    +  +
Sbjct: 59  LQRKSGNLNQLARNELTEEMLKRIEMKSRGINISDKEVDDAYAGFASRNKMTLAQLNQVM 118

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           ++ G+   HFK+Y+ +Q  W  +V   F       E E      K               
Sbjct: 119 NQSGVTPEHFKKYIMVQMGWGRLVSARFRATGMVSEQEAVQRMLKNGGKKPVATEYHLQQ 178

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
                   +    +  + +    +     ++C+   + A  I DV++     ++E  L  
Sbjct: 179 VIFVVPASKRSPALLAKRRQEANALRARFQNCDSTRQQAKGILDVTVRDLGRIIEPQLPG 238

Query: 245 QF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ------NTPTKI 297
           ++ +++     N TT P+ T+KGVE++A+C  R +  +   +   S +          K 
Sbjct: 239 EWSKDVKAAGVNRTTKPHDTEKGVEFLAVCSTRQVSDDRVAQLVFSMEGADSPAGQEKKA 298

Query: 298 EKHEAEYVKKLRSNAII 314
           E+   +YV++LR  A I
Sbjct: 299 EELSKKYVQELREKATI 315


>gi|160872391|ref|ZP_02062523.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Rickettsiella grylli]
 gi|159121190|gb|EDP46528.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Rickettsiella grylli]
          Length = 431

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 47/317 (14%), Positives = 116/317 (36%), Gaps = 18/317 (5%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
           ++K + ++ VL    + P + Y +     RI   +N   IT   +  ++ + + Q ++  
Sbjct: 3   YLKKIFSFIVLWTSLVTPSLLY-AIETLDRIEAVVNHHAITAQQLDNQMEVKRQQWLSEN 61

Query: 72  --------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
                     K  + E+I + L+ Q     G+  + +T++   +  A++ GL+ E     
Sbjct: 62  KSIPNTTTFRKQVLNEMIDQELQLQLAATIGLKINDDTLDKTILSIAQHNGLTLEQLREK 121

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE--YLIR 181
           L +  +    +++ +  Q +   + +N+   K    + EI      +  I  ++  Y + 
Sbjct: 122 LQQANMPFARYREQIRHQLLINRLQQNEVAAKITVTDQEIKDMLTHLPKIISKKAVYHVE 181

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV-SIGKAQYLLES 240
            +L    +N         K    +   + +     + L + A+      S G   +   +
Sbjct: 182 DLLIPFSNNPSSTDIARTKETALSLLQKAKQGTSFSALIEHANASTIPLSGGDLGWRPLN 241

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR-----DLGGEIALKAYLSAQNTP 294
           DL   FQ  ++         P     G   I + + R               ++  + +P
Sbjct: 242 DLPDIFQTSVQTLKPGEVAGPIRADNGFHLIRLLELRGIAPAPHDVISTHARHILIKTSP 301

Query: 295 TKIEKHEAEYVKKLRSN 311
               +     ++++R++
Sbjct: 302 LLNNQQAENRLREIRAD 318



 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 49/140 (35%), Gaps = 4/140 (2%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
                 I  + L N    + R+++     L      +  +K++         G   + L 
Sbjct: 291 HARHILIKTSPLLNNQQAENRLREIRADILHGGDFASLAKKYSQDPGSSYKGGDLGWTLP 350

Query: 240 SDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICD--KRDLGGEIALKAYLSAQNTPTK 296
               P F+    K + N  + P+ TQ G   + +    K+    +  L    +      K
Sbjct: 351 GFFDPTFEEHLKKLAVNQISLPFQTQYGWHIVQVLGRAKKLQTAQNTLHKQAAQLVYQKK 410

Query: 297 IEKHEAEYVKKLRSNAIIHY 316
            +K    ++++LR+ + +  
Sbjct: 411 FQKALKNWLRQLRNQSYVKI 430


>gi|284008562|emb|CBA75119.1| chaperone SurA protein (peptidyl-prolyl cis-trans isomerase)
           [Arsenophonus nasoniae]
          Length = 433

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/310 (10%), Positives = 99/310 (31%), Gaps = 16/310 (5%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GE 71
            ++ +   V   +  +     ++   +N  V+   D+   + ++++   N          
Sbjct: 7   LIIGLLFTVSTTTLAAPQQLDKVTAIVNDGVVLQSDVDGMLDIVRINARNAGQQIPDENA 66

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           L    ++ LI++ +  Q  EK  I      ++      A   GL+       L   GI  
Sbjct: 67  LRHQILERLIIDKIIMQIAEKMQIQIPDQAIDATIANIAAQNGLTIGQLQQRLSMDGINL 126

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
            +++  +  + +  +V  N+   +   L  E+ +   ++ +   ++  +      IP  +
Sbjct: 127 QNYRSDVRREMMIAEVRNNEVRRRITILPQEVDSLAAQLNSQAGQDANVNLSHILIPLPE 186

Query: 192 LQNQGFVQKRI---KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
                  Q  +           +          +++  + +  G+  +    +L   F  
Sbjct: 187 NPTNTQSQLAMDTVNKIIAQLKQGADFGKLAITYSADPNALKGGQMGWSKVEELPTVFAQ 246

Query: 249 L-LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAE 303
                 + +   P  +  G   + + D +     +        ++  + +P    +    
Sbjct: 247 QIQHAKKGDIIGPIRSSVGFHILKLNDIQRGNMPISVTEVKARHILIKLSPIMNNEQAHA 306

Query: 304 YVKKLRSNAI 313
            ++++     
Sbjct: 307 KIQQIAQQIK 316



 Score = 83.6 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 92/290 (31%), Gaps = 18/290 (6%)

Query: 43  RTTI-NGEV-----ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGIT 96
              + N EV     I   ++    A L  Q        ++   LI         +     
Sbjct: 139 IAEVRNNEVRRRITILPQEVDSLAAQLNSQAGQDANVNLS-HILIPLPENPTNTQSQLAM 197

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND----- 151
              N +     Q A    L+    +     +G      K           +         
Sbjct: 198 DTVNKIIAQLKQGADFGKLAITYSADPNALKGGQMGWSKVEELPTVFAQQIQHAKKGDII 257

Query: 152 --FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
                  G   +++   ++    I+V E   R +L  +       Q    K  + A++ +
Sbjct: 258 GPIRSSVGFHILKLNDIQRGNMPISVTEVKARHILIKLSPIMNNEQAH-AKIQQIAQQIK 316

Query: 210 LRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGV 267
                     +K++      +  G+  + + +   P F++  ++ S+  T+ P  +  G 
Sbjct: 317 TGQITFAEAAKKYSQDPGSALRGGELGWNMPNIYDPAFRDGLMRLSKGETSQPIHSSFGW 376

Query: 268 EYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             I + D R +   ++A K +        K  +    ++++LR++A +  
Sbjct: 377 HLIQLEDTRQVDKTDVAQKDHAYRLLFNRKFNEEAQIWMQELRASAYVKI 426


>gi|145300233|ref|YP_001143074.1| chaperone surA [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853005|gb|ABO91326.1| chaperone surA [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 432

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 28/310 (9%), Positives = 100/310 (32%), Gaps = 15/310 (4%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--- 70
           K L +     +F  +   ++ +  +  ++   +N +V+        +  +K         
Sbjct: 3   KTLISLLTAGLFGAMSQGAFAAPELMDKVLAVVNKDVVLASQQEALVQKVKSSAQESGQS 62

Query: 71  -----ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
                 L K A+  LI E+L+ Q  ++ G+      +       A +  ++ +   + L 
Sbjct: 63  LPDDATLRKQALDRLIQESLQLQLADRQGLKISDTQLEQAIQSIAADNKMTLDQLRAQLA 122

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
           ++G+    +++ +  + +  +V +N    +    + E+      +     ++        
Sbjct: 123 REGLTYAQYREEVRREILMNEVRRNQVRRRINISDQEVKQVVDILAKQGQQQQQYHVGHI 182

Query: 186 SIPDNKLQNQGFVQKRIKDAE---ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
            I      +   +       E    +  +           ++    +  G   ++   ++
Sbjct: 183 QIALPDNPSAEQLNAAKSKIERILAALKQGADFRKLAIAESNGPKALEGGDWSWMSPQEM 242

Query: 243 HPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIE 298
                + +   ++ +   P  +  G+  + + D +    +        ++  + +    E
Sbjct: 243 PTLMAEAVQGAAKGDIVGPLRSGAGLHIVKVFDAKGQQQVLQTEVKARHILIKPSIILSE 302

Query: 299 KHEAEYVKKL 308
           +     +  +
Sbjct: 303 EKAKGMLDGI 312



 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 17/150 (11%), Positives = 48/150 (32%), Gaps = 4/150 (2%)

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HD 228
            + +   E   R +L        + +          +    +     +  EK++      
Sbjct: 279 QQQVLQTEVKARHILIKPSIILSEEKAKGMLDGILHDIKSGKATF-ASLAEKYSEDPGSA 337

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY 287
           V  G+  +   +   P+F++++ +      + P+ T  G   + + ++R        +  
Sbjct: 338 VQGGELGWSDPNVYVPEFRDMVNRLKPGELSAPFRTTHGWHIVQLEERRSQDATSKAQEQ 397

Query: 288 -LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                    +  +    ++ +LR  A I  
Sbjct: 398 RAYQLIFNRRFTEESQAWLDELRDEAYIQI 427


>gi|94971251|ref|YP_593299.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94553301|gb|ABF43225.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 369

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 54/319 (16%), Positives = 110/319 (34%), Gaps = 17/319 (5%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING- 70
           F+K +     L+    VP+ +     +   I   +N ++IT  D+ +    +  Q     
Sbjct: 10  FMKKILVSSFLVAALAVPMFAGDDTVVEE-IIARVNNQIITRADLRRESEQVLDQLKQQD 68

Query: 71  ---------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
                    + +K  +++LI + L   +    GI+ D+  +        +    S +D  
Sbjct: 69  AATADQKFVQRQKDVLRDLIDQQLLVDKGADLGISADAELIKRLDEMRKQMNLASMDDLE 128

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK--QKMKNITVREYL 179
           +   KQG+    FKQ +  Q I   V+  +        + E        K +     +  
Sbjct: 129 NEAKKQGVSFEDFKQNMKNQIITQRVISQEVGSHIQITKDEEQKFYDAHKSEMERPEQVR 188

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV-SIGKAQYLL 238
           +  +L  +   K  N    Q++ +          K  +  +  ++        G   Y  
Sbjct: 189 LSEILVPVDAEKDPNATAAQQKAEGIIAELKAGKKFDDVAKAESAGPTAKEQGGDLGYFK 248

Query: 239 ESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPT 295
              L  Q ++ +    +   T P  T++G   I + + +   +     ++  L       
Sbjct: 249 RGVLAKQLEDTVFPLKEGEYTEPIRTKQGFVIIKVTEHQQSGVPPLQQIEPKLQEAVYME 308

Query: 296 KIEKHEAEYVKKLRSNAII 314
           K+E     Y+ KLR  A I
Sbjct: 309 KLEPTLRTYLTKLREEAYI 327


>gi|306845285|ref|ZP_07477861.1| Chaperone surA precursor [Brucella sp. BO1]
 gi|306274444|gb|EFM56251.1| Chaperone surA precursor [Brucella sp. BO1]
 gi|326538427|gb|ADZ86642.1| chaperone surA precursor [Brucella melitensis M5-90]
          Length = 317

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 67/308 (21%), Positives = 128/308 (41%), Gaps = 9/308 (2%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
            +L     L     V   ++ +     ++   ++G  IT+ DI  R+A LKLQ+ +G L 
Sbjct: 9   SMLGAAVCLTALGTVAAPAFAAGESEVKVI--VSGNAITNSDIKHRMAFLKLQRKSGNLN 66

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           ++A  EL  E LK+ E++  GI      V+  +   A    ++    +  +++ G+   H
Sbjct: 67  QLARNELTEEMLKRIEMKSRGINISDKEVDDAYAGFASRNKMTLAQLNQVMNQSGVTPEH 126

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
           FK+Y+ +Q  W  +V   F       E E      K                       +
Sbjct: 127 FKKYIMVQMGWGRLVSARFRATGMVSEQEAVQRMLKNGGKKPVATEYHLQQVIFVVPASK 186

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKK 252
               +  + +    +     ++C+   + A  I DV++     ++E  L  ++ +++   
Sbjct: 187 RSPALLAKRRQEANALRARFQNCDSTRQQAKGILDVTVRDLGRIIEPQLPGEWSKDVKAA 246

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ------NTPTKIEKHEAEYVK 306
             N TT P+ T+KGVE++A+C  R +  +   +   S +          K E+   +YV+
Sbjct: 247 GVNRTTKPHDTEKGVEFLAVCSTRQVSDDRVAQLVFSMEGADSPAGQEKKAEELSKKYVQ 306

Query: 307 KLRSNAII 314
           +LR  A I
Sbjct: 307 ELREKATI 314


>gi|225627181|ref|ZP_03785219.1| Chaperone surA precursor [Brucella ceti str. Cudo]
 gi|260168435|ref|ZP_05755246.1| peptidyl-prolyl cis-trans isomerase, putative [Brucella sp. F5/99]
 gi|261757897|ref|ZP_06001606.1| SurA domain-containing protein [Brucella sp. F5/99]
 gi|225618016|gb|EEH15060.1| Chaperone surA precursor [Brucella ceti str. Cudo]
 gi|261737881|gb|EEY25877.1| SurA domain-containing protein [Brucella sp. F5/99]
          Length = 318

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 67/317 (21%), Positives = 130/317 (41%), Gaps = 9/317 (2%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +  +      +L     L     V   ++ +     ++   ++G  IT+ DI  R+A LK
Sbjct: 1   MMFARPLIASMLGAAVCLTALGTVAAPAFAAGESEVKVI--VSGNAITNSDIKHRMAFLK 58

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
           LQ+ +G L ++A  EL  E LK+ E++  GI      V+  +   A    ++    +  +
Sbjct: 59  LQRKSGNLNQLARNELTEEMLKRIEMKSRGINISDKEVDDAYAGFASRNKMTLAQLNQVM 118

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           ++ G+   HFK+Y+ +Q  W  +V   F       E E      K               
Sbjct: 119 NQSGVTPEHFKKYIMVQMGWGRLVSARFRATGMVSEQEAVQRMLKNGGKKPVATEYHLQQ 178

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
                   +    +  + +    +     ++C+   + A  I DV++     ++E  L  
Sbjct: 179 VIFVVPASKRSPALLAKRRQEANALRARFQNCDSTRQQAKGILDVTVRDLGRIIEPQLPG 238

Query: 245 QF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ------NTPTKI 297
           ++ +++     N TT P+ T+KGVE++A+C  R +  +   +   S +          K 
Sbjct: 239 EWSKDVKAAGVNRTTKPHDTEKGVEFLAVCSTRQVSDDRVAQLVFSVEGADSPAGQEKKA 298

Query: 298 EKHEAEYVKKLRSNAII 314
           E+   +YV++LR  A I
Sbjct: 299 EELSKKYVQELREKATI 315


>gi|23501571|ref|NP_697698.1| peptidyl-prolyl cis-trans isomerase [Brucella suis 1330]
 gi|62289646|ref|YP_221439.1| peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 1 str.
           9-941]
 gi|82699574|ref|YP_414148.1| peptidyl-prolyl cis-trans isomerase [Brucella melitensis biovar
           Abortus 2308]
 gi|189023896|ref|YP_001934664.1| peptidyl-prolyl cis-trans isomerase [Brucella abortus S19]
 gi|225852204|ref|YP_002732437.1| chaperone SurA [Brucella melitensis ATCC 23457]
 gi|237815137|ref|ZP_04594135.1| Chaperone surA precursor [Brucella abortus str. 2308 A]
 gi|254697090|ref|ZP_05158918.1| Chaperone surA precursor [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701467|ref|ZP_05163295.1| Chaperone surA precursor [Brucella suis bv. 5 str. 513]
 gi|254704014|ref|ZP_05165842.1| Chaperone surA precursor [Brucella suis bv. 3 str. 686]
 gi|254707612|ref|ZP_05169440.1| Chaperone surA precursor [Brucella pinnipedialis M163/99/10]
 gi|254709805|ref|ZP_05171616.1| Chaperone surA precursor [Brucella pinnipedialis B2/94]
 gi|254713809|ref|ZP_05175620.1| Chaperone surA precursor [Brucella ceti M644/93/1]
 gi|254717133|ref|ZP_05178944.1| Chaperone surA precursor [Brucella ceti M13/05/1]
 gi|254729986|ref|ZP_05188564.1| Chaperone surA precursor [Brucella abortus bv. 4 str. 292]
 gi|256031296|ref|ZP_05444910.1| Chaperone surA precursor [Brucella pinnipedialis M292/94/1]
 gi|256060809|ref|ZP_05450969.1| Chaperone surA precursor [Brucella neotomae 5K33]
 gi|256113220|ref|ZP_05454088.1| Chaperone surA precursor [Brucella melitensis bv. 3 str. Ether]
 gi|256159410|ref|ZP_05457188.1| Chaperone surA precursor [Brucella ceti M490/95/1]
 gi|256254704|ref|ZP_05460240.1| Chaperone surA precursor [Brucella ceti B1/94]
 gi|256257204|ref|ZP_05462740.1| Chaperone surA precursor [Brucella abortus bv. 9 str. C68]
 gi|256264288|ref|ZP_05466820.1| SurA domain-containing protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|256369119|ref|YP_003106627.1| peptidyl-prolyl cis-trans isomerase, putative [Brucella microti CCM
           4915]
 gi|260545602|ref|ZP_05821343.1| SurA domain-containing protein [Brucella abortus NCTC 8038]
 gi|260757664|ref|ZP_05870012.1| SurA domain-containing protein [Brucella abortus bv. 4 str. 292]
 gi|260761491|ref|ZP_05873834.1| SurA domain-containing protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260883474|ref|ZP_05895088.1| SurA domain-containing protein [Brucella abortus bv. 9 str. C68]
 gi|261218948|ref|ZP_05933229.1| SurA domain-containing protein [Brucella ceti M13/05/1]
 gi|261221884|ref|ZP_05936165.1| SurA domain-containing protein [Brucella ceti B1/94]
 gi|261315102|ref|ZP_05954299.1| SurA domain-containing protein [Brucella pinnipedialis M163/99/10]
 gi|261317343|ref|ZP_05956540.1| SurA domain-containing protein [Brucella pinnipedialis B2/94]
 gi|261321553|ref|ZP_05960750.1| SurA domain-containing protein [Brucella ceti M644/93/1]
 gi|261324801|ref|ZP_05963998.1| SurA domain-containing protein [Brucella neotomae 5K33]
 gi|261752010|ref|ZP_05995719.1| SurA domain-containing protein [Brucella suis bv. 5 str. 513]
 gi|261754669|ref|ZP_05998378.1| SurA domain-containing protein [Brucella suis bv. 3 str. 686]
 gi|265988381|ref|ZP_06100938.1| SurA domain-containing protein [Brucella pinnipedialis M292/94/1]
 gi|265994631|ref|ZP_06107188.1| SurA domain-containing protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|265997847|ref|ZP_06110404.1| SurA domain-containing protein [Brucella ceti M490/95/1]
 gi|294852046|ref|ZP_06792719.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. NVSL 07-0026]
 gi|297248054|ref|ZP_06931772.1| peptidyl-prolyl cis-trans isomerase SurA [Brucella abortus bv. 5
           str. B3196]
 gi|306842051|ref|ZP_07474724.1| Chaperone surA precursor [Brucella sp. BO2]
 gi|23347483|gb|AAN29613.1| peptidyl-prolyl cis-trans isomerase, putative [Brucella suis 1330]
 gi|62195778|gb|AAX74078.1| peptidyl-prolyl cis-trans isomerase, hypothetical [Brucella abortus
           bv. 1 str. 9-941]
 gi|82615675|emb|CAJ10662.1| peptidyl-prolyl cis-trans isomerase, putative [Brucella melitensis
           biovar Abortus 2308]
 gi|189019468|gb|ACD72190.1| peptidyl-prolyl cis-trans isomerase, putative [Brucella abortus
           S19]
 gi|225640569|gb|ACO00483.1| Chaperone surA precursor [Brucella melitensis ATCC 23457]
 gi|237789974|gb|EEP64184.1| Chaperone surA precursor [Brucella abortus str. 2308 A]
 gi|255999279|gb|ACU47678.1| peptidyl-prolyl cis-trans isomerase, putative [Brucella microti CCM
           4915]
 gi|260097009|gb|EEW80884.1| SurA domain-containing protein [Brucella abortus NCTC 8038]
 gi|260667982|gb|EEX54922.1| SurA domain-containing protein [Brucella abortus bv. 4 str. 292]
 gi|260671923|gb|EEX58744.1| SurA domain-containing protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260873002|gb|EEX80071.1| SurA domain-containing protein [Brucella abortus bv. 9 str. C68]
 gi|260920468|gb|EEX87121.1| SurA domain-containing protein [Brucella ceti B1/94]
 gi|260924037|gb|EEX90605.1| SurA domain-containing protein [Brucella ceti M13/05/1]
 gi|261294243|gb|EEX97739.1| SurA domain-containing protein [Brucella ceti M644/93/1]
 gi|261296566|gb|EEY00063.1| SurA domain-containing protein [Brucella pinnipedialis B2/94]
 gi|261300781|gb|EEY04278.1| SurA domain-containing protein [Brucella neotomae 5K33]
 gi|261304128|gb|EEY07625.1| SurA domain-containing protein [Brucella pinnipedialis M163/99/10]
 gi|261741763|gb|EEY29689.1| SurA domain-containing protein [Brucella suis bv. 5 str. 513]
 gi|261744422|gb|EEY32348.1| SurA domain-containing protein [Brucella suis bv. 3 str. 686]
 gi|262552315|gb|EEZ08305.1| SurA domain-containing protein [Brucella ceti M490/95/1]
 gi|262765744|gb|EEZ11533.1| SurA domain-containing protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263094548|gb|EEZ18357.1| SurA domain-containing protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|264660578|gb|EEZ30839.1| SurA domain-containing protein [Brucella pinnipedialis M292/94/1]
 gi|294820635|gb|EFG37634.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. NVSL 07-0026]
 gi|297175223|gb|EFH34570.1| peptidyl-prolyl cis-trans isomerase SurA [Brucella abortus bv. 5
           str. B3196]
 gi|306287892|gb|EFM59312.1| Chaperone surA precursor [Brucella sp. BO2]
 gi|326408703|gb|ADZ65768.1| peptidyl-prolyl cis-trans isomerase, putative [Brucella melitensis
           M28]
          Length = 318

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 67/317 (21%), Positives = 130/317 (41%), Gaps = 9/317 (2%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +  +      +L     L     V   ++ +     ++   ++G  IT+ DI  R+A LK
Sbjct: 1   MMFARPLIASMLGAAVCLTALGTVAAPAFAAGESEVKVI--VSGNAITNSDIKHRMAFLK 58

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
           LQ+ +G L ++A  EL  E LK+ E++  GI      V+  +   A    ++    +  +
Sbjct: 59  LQRKSGNLNQLARNELTEEMLKRIEMKSRGINISDKEVDDAYAGFASRNKMTLAQLNQVM 118

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           ++ G+   HFK+Y+ +Q  W  +V   F       E E      K               
Sbjct: 119 NQSGVTPEHFKKYIMVQMGWGRLVSARFRATGMVSEQEAVQRMLKNGGKKPVATEYHLQQ 178

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
                   +    +  + +    +     ++C+   + A  I DV++     ++E  L  
Sbjct: 179 VIFVVPASKRSPALLAKRRQEANALRARFQNCDSTRQQAKGILDVTVRDLGRIIEPQLPG 238

Query: 245 QF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ------NTPTKI 297
           ++ +++     N TT P+ T+KGVE++A+C  R +  +   +   S +          K 
Sbjct: 239 EWSKDVKAAGVNRTTKPHDTEKGVEFLAVCSTRQVSDDRVAQLVFSMEGADSPAGQEKKA 298

Query: 298 EKHEAEYVKKLRSNAII 314
           E+   +YV++LR  A I
Sbjct: 299 EELSKKYVQELREKATI 315


>gi|107023645|ref|YP_621972.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia AU 1054]
 gi|116690730|ref|YP_836353.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia HI2424]
 gi|170734072|ref|YP_001766019.1| SurA domain-containing protein [Burkholderia cenocepacia MC0-3]
 gi|122070635|sp|Q1BTQ6|SURA_BURCA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|105893834|gb|ABF76999.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia AU 1054]
 gi|116648819|gb|ABK09460.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia HI2424]
 gi|169817314|gb|ACA91897.1| SurA domain [Burkholderia cenocepacia MC0-3]
          Length = 452

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 99/302 (32%), Gaps = 22/302 (7%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------LEKIAVQELIVE 83
             +   ++  +   +N +VIT  ++ +R+ L+  +             L    + ++++E
Sbjct: 32  GSQGAQLADEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPADQLRAQVLNQMVLE 91

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            ++ Q+ +  GI  D  TV     + A+  G++ + +   L+ QG+  + F      + +
Sbjct: 92  RIQVQKAKDDGIRIDDATVQATLQRLAQANGMTLDQYRGRLEAQGVPWSIFTNDARTELM 151

Query: 144 WPDVVKNDFMLKYGNLEMEIPAN----KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
              + + +   K    + E+       +    +           + +  +    +    Q
Sbjct: 152 LSKLREREVDGKITVSDAEVANYIASQRGPNASQQQDLRFQHIFIKAPTNAPQADIEAAQ 211

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN 259
           K+     +            +  +        G   +   S L     +   K +    N
Sbjct: 212 KKADALLQQAKSGADFERLAKNNSEANDAKKGGDLGFKSPSALPADVVDAASKLRPGQVN 271

Query: 260 P--YVTQKGVEYIAICDKRDLGGEIALK--------AYLSAQNTPTKIEKHEAEYVKKLR 309
           P       G E + + D+R   G  A           ++  +    K E    + +  +R
Sbjct: 272 PTLIRVPDGFEIVRLVDRRQSQGASAAAPKIVQTHVRHILLRVGEGKSEGQARQQLVDIR 331

Query: 310 SN 311
           + 
Sbjct: 332 NQ 333



 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/287 (10%), Positives = 89/287 (31%), Gaps = 19/287 (6%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           ++G+ IT  D ++    +  Q+     ++  +       +K            +      
Sbjct: 160 VDGK-ITVSD-AEVANYIASQRGPNASQQQDL-RFQHIFIKAPTNAPQADIEAAQKKADA 216

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN--------------D 151
            +Q A++         +  +           + +  ++  DVV                 
Sbjct: 217 LLQQAKSGADFERLAKNNSEANDAKKGGDLGFKSPSALPADVVDAASKLRPGQVNPTLIR 276

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
               +  + +      Q       +          +   + +++G  ++++ D       
Sbjct: 277 VPDGFEIVRLVDRRQSQGASAAAPKIVQTHVRHILLRVGEGKSEGQARQQLVDIRNQVEA 336

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                     ++        G   ++   +  P+F+  +        + P  T+ G   I
Sbjct: 337 GGDFAKFARTYSQDGSASQGGDLGWISPGETVPEFERAMNNLQDGQISQPIRTEYGYHLI 396

Query: 271 AICDKRDLGGEIALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + ++R+  G +  +  +        K E+  A+++++LR ++ + Y
Sbjct: 397 QVLNRREAEGSVQQQMDIARQAIGQRKAEQAYADWLRELRDSSYVQY 443


>gi|149912930|ref|ZP_01901464.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseobacter sp.
           AzwK-3b]
 gi|149813336|gb|EDM73162.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseobacter sp.
           AzwK-3b]
          Length = 285

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 40/306 (13%), Positives = 79/306 (25%), Gaps = 53/306 (17%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMS---SRIRTTINGEVITDGDISKRIALLKLQK---ING 70
             +  L I   V      +   S     +  T+NG  IT G +    A L  Q       
Sbjct: 6   KLFPALAIVAAVGFAQAPAAQDSPDIDTVLATVNGTDITLGHMIALRASLPAQYGQLPPE 65

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
            L    + +LI +TL                                    SF  +    
Sbjct: 66  ILFNGILDQLIQQTLL---------------------------------MQSFEGEVSKR 92

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                +      +  +V++        + +++    ++        EY    +L      
Sbjct: 93  SALVLENERRAILATEVIEKVMQGALTDADIQAAYEERYASAGQETEYKAAHIL------ 146

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP-QFQNL 249
                   ++  +D                + ++     + G   +     +    F  +
Sbjct: 147 -----VETEETARDLIAQLEGGADFATLARENSTGPSGPNGGDLGWFGPGVMVESFFNAV 201

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
                   + P  TQ G   I + + R    E      + A+   T  ++    +V  L 
Sbjct: 202 ASLEPGQVSEPVQTQFGWHVIKLNETR--LTETPPLEEVRAEIEETLQQEKFDAHVDTLT 259

Query: 310 SNAIIH 315
             A I 
Sbjct: 260 DQATIE 265


>gi|92116105|ref|YP_575834.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter
           hamburgensis X14]
 gi|91798999|gb|ABE61374.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter
           hamburgensis X14]
          Length = 308

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 39/313 (12%), Positives = 88/313 (28%), Gaps = 47/313 (15%)

Query: 7   TSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI---SKRIALL 63
           T  S  ++L  +     +   + + +       + +   +NG  I   D+    + +   
Sbjct: 8   TKHSLRVRLALSALGGCLALTLLVGTPVRADDLNPVLAKVNGSEIRQSDVNVAEEELGPG 67

Query: 64  KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
             Q      ++  +  LI   +  +  E   I    +                       
Sbjct: 68  LAQMDPAAKQENVLSFLIDMKIIAKAAEDKKIENSEDFKKRL------------------ 109

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                        +   + +   ++ ++      +  M+        +  +  E   R +
Sbjct: 110 ------------AFARDRLLMDKLLASEGKAAITDEAMKTVYADASKQITSEEEVHARHI 157

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
           L              ++  K  E+   +        +K +        G   +  +  + 
Sbjct: 158 LVP-----------TEEEAKKVEDELKKGADFAELAKKESKDPGASDGGDLGFFTKEQMV 206

Query: 244 PQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEA 302
           P+F +          ++P  TQ G   I + +KR           +  Q       K +A
Sbjct: 207 PEFSKVAFALEPGKISDPVKTQFGWHIIKVEEKRARKA--PAFDQVKPQIEQFVTRKAQA 264

Query: 303 EYVKKLRSNAIIH 315
           +YV KLR  A I 
Sbjct: 265 DYVAKLRETAKIE 277


>gi|163737941|ref|ZP_02145357.1| preprotein translocase ATPase subunit [Phaeobacter gallaeciensis
           BS107]
 gi|161388557|gb|EDQ12910.1| preprotein translocase ATPase subunit [Phaeobacter gallaeciensis
           BS107]
          Length = 283

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/299 (12%), Positives = 89/299 (29%), Gaps = 50/299 (16%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN---GELEKIAV 77
           + +   +   +S  +   ++ +  T+NGE IT G +    A L  Q        L    +
Sbjct: 11  LALTVALTLPISTAAEPHANTVVATVNGEEITIGHMIIARATLPQQYQQLPDDVLYDAIL 70

Query: 78  QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY 137
            +LI +T  KQE                                    +         + 
Sbjct: 71  DQLIQQTSLKQE---------------------------------LNGEVPKYVALSLEN 97

Query: 138 LAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGF 197
            A   +  DV++        + ++    +++        E+    +L    ++    +  
Sbjct: 98  EARSLLAADVIEKVMENAASDEDLRTAYDEKYTDGTGGDEFNASHILVETEEDAADIRAE 157

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS-QNN 256
           +                      + ++     + G+  +  +  + PQF+  +      +
Sbjct: 158 LDA-----------GADFATLARERSTGPSGPNGGELGWFSKGRMVPQFEEAVLVMGAGD 206

Query: 257 TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            ++P  TQ G   I + D+R           +  +      ++   + V  L + A I 
Sbjct: 207 VSDPVQTQFGWHVIKLNDRRTSAA--PTFDEVREELATQMRQEAVEDRVLSLTTAATIE 263


>gi|163842954|ref|YP_001627358.1| chaperone surA precursor [Brucella suis ATCC 23445]
 gi|163673677|gb|ABY37788.1| Chaperone surA precursor [Brucella suis ATCC 23445]
          Length = 318

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 67/317 (21%), Positives = 130/317 (41%), Gaps = 9/317 (2%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +  +      +L     L     V   ++ +     ++   ++G  IT+ DI  R+A LK
Sbjct: 1   MMFARPLIASMLGAAVCLTALGTVAAPAFAAGESEVKVI--VSGNAITNSDIKHRMAFLK 58

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
           LQ+ +G L ++A  EL  E LK+ E++  GI      V+  +   A    ++    +  +
Sbjct: 59  LQRKSGNLNQLARNELTEEMLKRIEMKSRGINISDKEVDDAYAGFASRNKMTLAQLNQVM 118

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           ++ G+   HFK+Y+ +Q  W  +V   F       E E      K               
Sbjct: 119 NQSGVTPEHFKKYIMVQMGWGRLVSARFRATGMVSEQEAVQRMLKNGGKKPVATEYHLQQ 178

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
                   +    +  + +    +     ++C+   + A  I DV++     ++E  L  
Sbjct: 179 VIFVLPASKRSPALLAKRRQEANALRARFQNCDSTRQQAKGILDVTVRDLGRIIEPQLPG 238

Query: 245 QF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ------NTPTKI 297
           ++ +++     N TT P+ T+KGVE++A+C  R +  +   +   S +          K 
Sbjct: 239 EWSKDVKAAGVNRTTKPHDTEKGVEFLAVCSTRQVSDDRVAQLVFSMEGADSPAGQEKKA 298

Query: 298 EKHEAEYVKKLRSNAII 314
           E+   +YV++LR  A I
Sbjct: 299 EELSKKYVQELREKATI 315


>gi|17987548|ref|NP_540182.1| survival protein surA precursor (peptidyl-prolyl cis-trans
           isomerase surA) [Brucella melitensis bv. 1 str. 16M]
 gi|265990795|ref|ZP_06103352.1| SurA domain-containing protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|17983251|gb|AAL52446.1| survival protein sura precursor (peptidyl-prolyl cis-trans
           isomerase sura) [Brucella melitensis bv. 1 str. 16M]
 gi|263001579|gb|EEZ14154.1| SurA domain-containing protein [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 317

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 68/308 (22%), Positives = 128/308 (41%), Gaps = 9/308 (2%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
            +L     L     V   ++ +     ++   ++G  IT+ DI  R+A LKLQ+ +G L 
Sbjct: 9   SMLGAAVCLTALGTVAAPAFAAGESEVKVI--VSGNAITNSDIKHRMAFLKLQRKSGNLN 66

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           ++A  EL  E LK+ E++  GI      VN  +   A    ++    +  +++ G+   H
Sbjct: 67  QLARNELTEEMLKRIEMKSLGINISDKEVNDAYAGFASRNKMTLAQLNQVMNQSGVTPEH 126

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
           FK+Y+ +Q  W  +V   F       E E      K                       +
Sbjct: 127 FKKYIMVQMGWGRLVSARFRATGMVSEQEAVQRMLKNGGKKPVATEYHLQQVIFVVPASK 186

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKK 252
               +  + +    +     ++C+   + A  I DV++     ++E  L  ++ +++   
Sbjct: 187 RSPALLAKRRQEANALRARFQNCDSTRQQAKGILDVTVRDLGRIIEPQLPGEWSKDVKAA 246

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ------NTPTKIEKHEAEYVK 306
             N TT P+ T+KGVE++A+C  R +  +   +   S +          K E+   +YV+
Sbjct: 247 GVNRTTKPHDTEKGVEFLAVCSTRQVSDDRVAQLVFSMEGADSPAGQEKKAEELSKKYVQ 306

Query: 307 KLRSNAII 314
           +LR  A I
Sbjct: 307 ELREKATI 314


>gi|256044377|ref|ZP_05447281.1| survival protein surA precursor (peptidyl-prolyl cis-trans
           isomerase surA) [Brucella melitensis bv. 1 str. Rev.1]
 gi|260563729|ref|ZP_05834215.1| SurA domain-containing protein [Brucella melitensis bv. 1 str. 16M]
 gi|260153745|gb|EEW88837.1| SurA domain-containing protein [Brucella melitensis bv. 1 str. 16M]
          Length = 318

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 68/317 (21%), Positives = 130/317 (41%), Gaps = 9/317 (2%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +  +      +L     L     V   ++ +     ++   ++G  IT+ DI  R+A LK
Sbjct: 1   MMFARPLIASMLGAAVCLTALGTVAAPAFAAGESEVKVI--VSGNAITNSDIKHRMAFLK 58

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
           LQ+ +G L ++A  EL  E LK+ E++  GI      VN  +   A    ++    +  +
Sbjct: 59  LQRKSGNLNQLARNELTEEMLKRIEMKSLGINISDKEVNDAYAGFASRNKMTLAQLNQVM 118

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           ++ G+   HFK+Y+ +Q  W  +V   F       E E      K               
Sbjct: 119 NQSGVTPEHFKKYIMVQMGWGRLVSARFRATGMVSEQEAVQRMLKNGGKKPVATEYHLQQ 178

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
                   +    +  + +    +     ++C+   + A  I DV++     ++E  L  
Sbjct: 179 VIFVVPASKRSPALLAKRRQEANALRARFQNCDSTRQQAKGILDVTVRDLGRIIEPQLPG 238

Query: 245 QF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ------NTPTKI 297
           ++ +++     N TT P+ T+KGVE++A+C  R +  +   +   S +          K 
Sbjct: 239 EWSKDVKAAGVNRTTKPHDTEKGVEFLAVCSTRQVSDDRVAQLVFSMEGADSPAGQEKKA 298

Query: 298 EKHEAEYVKKLRSNAII 314
           E+   +YV++LR  A I
Sbjct: 299 EELSKKYVQELREKATI 315


>gi|209548668|ref|YP_002280585.1| peptidyl-prolyl cis-trans isomerase protein [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209534424|gb|ACI54359.1| putative peptidyl-prolyl cis-trans isomerase protein [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 314

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 139/291 (47%), Gaps = 10/291 (3%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKS 93
                +S ++  +NG  IT GD++KR A ++LQ    +  K A ++LI ETLK+QE+ + 
Sbjct: 25  APALAASEVKAVVNGTAITSGDVAKRQAFMRLQHTKADA-KAAEEQLIDETLKRQEVSRV 83

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
            ++     V+  F + +    LS E  S  LD+ G+G +HFK ++A+Q  WP VV   + 
Sbjct: 84  HMSVSQQDVDASFARFSAGNKLSVEQMSQILDRAGVGVDHFKGFIAVQMSWPRVVNARYG 143

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                   ++ +   +                     + +      KR  +AE SR + P
Sbjct: 144 STSRLSNYDLVSRMMQNNKQKPVTTEYMLQQIIFVIPQAKRNAITGKRKGEAEASRSKFP 203

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAIC 273
              ++ + FA+ + DVS+     +L  ++ P ++ L+++++ NTT   VT KGVEY+AIC
Sbjct: 204 GC-DQAKVFAATMRDVSVRDLGRMLAPEIPPDWKPLVEQAKGNTTGTRVTDKGVEYLAIC 262

Query: 274 DKRDLGGEIALKAYLSAQNTPTKI--------EKHEAEYVKKLRSNAIIHY 316
            +R +  + A +     ++              ++  +Y+ +LR  A I Y
Sbjct: 263 SQRQVSDDQAAEMVFRQEDLGKAKGGKDASPENENSKKYLDELRKKAQIAY 313


>gi|115522177|ref|YP_779088.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisA53]
 gi|115516124|gb|ABJ04108.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisA53]
          Length = 309

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 37/305 (12%), Positives = 81/305 (26%), Gaps = 47/305 (15%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI---SKRIALLKLQKINGE 71
                   +  C++          ++ +   +NG  I   D+    + +A    Q     
Sbjct: 13  RFGLACAAVTGCLLMAAVPVRAQDANPVVAKVNGTEIRQSDLTLAEEELAPNLAQMDPAA 72

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
            ++  +  LI   +  +  E   I   ++  +                            
Sbjct: 73  RKENVLAFLIDMRIVAKAAEDKKIADRADFKSRL-------------------------- 106

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                +   + +   ++  +         M+        +     E   R +L    D  
Sbjct: 107 ----DFARNRILMDQLLAAEGKAAATGDAMKKVYEDAAKQIAGEPEVHARHILVETEDEA 162

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
                 ++K                   +K +        G   +  +  + P+F     
Sbjct: 163 KAVVEELKK-----------GADFAELAKKKSKDPGAADGGDLGFFTKDQMVPEFSTAAF 211

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
                  + P  +Q G   I + +KR+          +  Q       K +A+YV KLR+
Sbjct: 212 ALEPGKVSEPVKSQFGWHVIKVEEKRNRKA--PDFDQVKGQIETYVARKAQADYVTKLRA 269

Query: 311 NAIIH 315
            A I 
Sbjct: 270 EAKIE 274


>gi|121606958|ref|YP_984287.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas
           naphthalenivorans CJ2]
 gi|120595927|gb|ABM39366.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas
           naphthalenivorans CJ2]
          Length = 469

 Score =  123 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 38/298 (12%), Positives = 89/298 (29%), Gaps = 21/298 (7%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--------ELEKIAVQELIVETLK 86
           +   +  I   +N E IT+ ++  ++   + Q            EL    ++ +I +  +
Sbjct: 56  AQQQADFIVVVVNSEPITNNEVRTKLLRTEQQLKQQSIALPPRSELMPQLLERMISDKAQ 115

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
            Q  + +G   D N V       AR   ++ ++    L   GI    F+  +  + +   
Sbjct: 116 LQAAQATGFKIDDNAVEGAVQTVARQNQITVDELRRRLKADGIDYAQFRSEIRDELLISR 175

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV-------LFSIPDNKLQNQGFVQ 199
           + + +   +    EMEI    +  +                   +    +   +    +Q
Sbjct: 176 LRQREVESRINVSEMEIDDYLRSQEGKPGAAGAAPAALNLAEILVAVPENATPEQVASLQ 235

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTT 258
            + +   E             + ++     + G+          P F +           
Sbjct: 236 AKARQVLERAKAGADFAALATEVSAAASRSNGGQIGLRSADRYPPLFVEATQSLPAGGLA 295

Query: 259 NPYVTQKGVEYIAICDKR-----DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            P  +  G   + + +KR     D         ++  + TP   E    E +   +  
Sbjct: 296 GPVRSAAGFHILKVIEKRQGGLPDAVITQTHARHILLRLTPQLTEAAAVEKLAGFKKR 353



 Score = 92.8 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 18/167 (10%), Positives = 52/167 (31%), Gaps = 2/167 (1%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                G   +++   +Q      V        +      +L     V+K     +     
Sbjct: 298 VRSAAGFHILKVIEKRQGGLPDAVITQTHARHILLRLTPQLTEAAAVEKLAGFKKRIVAG 357

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                    + +        G   ++      P+F+ ++   + N  ++P V++ GV  +
Sbjct: 358 QADFAALARENSQDASAKQGGDLGWVPGGAFVPEFEKVMNALAPNQVSDPLVSRFGVHLV 417

Query: 271 AICDKRDLGG-EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + ++R+        +  +       K  +    + + +R  A + +
Sbjct: 418 QVLERREAPVSPRDQREMVRGMLREKKQNEAYVRWAEDIRGRAYVEF 464


>gi|163868025|ref|YP_001609229.1| peptidyl-prolyl cis-trans isomerase [Bartonella tribocorum CIP
           105476]
 gi|161017676|emb|CAK01234.1| Peptidyl-prolyl cis-trans isomerase [Bartonella tribocorum CIP
           105476]
          Length = 322

 Score =  123 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 71/324 (21%), Positives = 128/324 (39%), Gaps = 11/324 (3%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIF----CIVPIVSYKSWAMSSRIRTTINGEVITDGDI 56
           M   ++  ++   K L   F +        ++      S    + I  T+NG  IT+ DI
Sbjct: 1   MRKPIY--MNKLKKRLLALFCIASLGVSSLLINEFLISSAFAQTAIVVTVNGNPITNYDI 58

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            +R+A L+LQ+  G L   A +ELI E LK  EI++  I   ++ VN  F   A    ++
Sbjct: 59  QRRVAFLRLQQKQGSLAAQAKKELIDEELKNIEIKRRNIEVSNDEVNRAFENFATQNNMT 118

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            +  +  L +  I   HFK Y+  Q  W  +V   +  + G +  +    +         
Sbjct: 119 VDQLNQILIQNDITVQHFKDYIRGQIGWGRLVSARYQAQTGMVSEQEAVRRILKNGGVKP 178

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
                T+   +       +  + +R +    +     + C      A  I DV+I     
Sbjct: 179 STNEYTLQRIVFVIPAHRRSEILERRQREASNFRAHFRGCANAHNQARGILDVTIRPLGK 238

Query: 237 LLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP- 294
            LE  L   ++  +  +     T    T  G+E IA+C  + +  +   +   S Q+   
Sbjct: 239 FLEPQLPSAWEQAILATPAGKMTKLQETSDGIEAIAVCKIKRISDDYVARLIFSLQDNKK 298

Query: 295 ---TKIEKHEAEYVKKLRSNAIIH 315
               K+E+   +Y+++LR  A I 
Sbjct: 299 RDPKKLEELSEKYLEELRRVARIQ 322


>gi|148559269|ref|YP_001258666.1| putative peptidyl-prolyl cis-trans isomerase [Brucella ovis ATCC
           25840]
 gi|148370526|gb|ABQ60505.1| putative peptidyl-prolyl cis-trans isomerase [Brucella ovis ATCC
           25840]
          Length = 318

 Score =  123 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 66/317 (20%), Positives = 129/317 (40%), Gaps = 9/317 (2%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +  +      +L     L     V   ++ +     ++   ++G  IT+ DI  R+A LK
Sbjct: 1   MMFARPLIASMLGAAVCLTALGTVAAPAFAAGESEVKVI--VSGNAITNSDIKHRMAFLK 58

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
           LQ+ +G L ++A  EL  E LK+ E++   I      V+  +   A    ++    +  +
Sbjct: 59  LQRKSGNLNQLARNELTEEMLKRIEMKSRSINISDKEVDDAYAGFASRNKMTLAQLNQVM 118

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           ++ G+   HFK+Y+ +Q  W  +V   F       E E      K               
Sbjct: 119 NQSGVTPEHFKKYIMVQMGWGRLVSARFRATGMVSEQEAVQRMLKNGGKKPVATEYHLQQ 178

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
                   +    +  + +    +     ++C+   + A  I DV++     ++E  L  
Sbjct: 179 VIFVVPASKRSPALLAKRRQEANALRARFQNCDSTRQQAKGILDVTVRDLGRIIEPQLPG 238

Query: 245 QF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ------NTPTKI 297
           ++ +++     N TT P+ T+KGVE++A+C  R +  +   +   S +          K 
Sbjct: 239 EWSKDVKAAGVNRTTKPHDTEKGVEFLAVCSTRQVSDDRVAQLVFSMEGADSPAGQEKKA 298

Query: 298 EKHEAEYVKKLRSNAII 314
           E+   +YV++LR  A I
Sbjct: 299 EELSKKYVQELREKATI 315


>gi|167561603|ref|ZP_02354519.1| survival protein SurA, putative [Burkholderia oklahomensis EO147]
          Length = 452

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 39/336 (11%), Positives = 107/336 (31%), Gaps = 25/336 (7%)

Query: 1   MTSKVFTSL--SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK 58
           M   +  +   S  +  L T         +  +  +  +++  +   +N +VIT  ++ +
Sbjct: 1   MKKTLRFAAVASGLVASLITVAPAASAQALRALRAQGASLADEVVAVVNNDVITGRELDQ 60

Query: 59  RIALLKLQKING--------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           R+ L+  +            +L    + ++++E ++ Q  +  GI  D+ TV     + A
Sbjct: 61  RVGLIARRLQQQKAPVPPIDQLRAQVLNQMVLERIQIQRAKDDGIVVDNATVQATLGRLA 120

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
           +  G+  + + + ++ QG+  + F +    + +   + + +   K    + E+ +     
Sbjct: 121 QANGMPLDQYKARIEAQGVPWDVFVRDARTELMLSKLREKEVDGKITVSDAEVASYIASQ 180

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQG-----FVQKRIKDAEESRLRLPKDCNKLEKFASK 225
           +           +                    +K     +++           +  +  
Sbjct: 181 RGPNAGSQQDLRLEHIFVKAPTSAPQADIDVAQKKAEGLLQQALASGADFERLAKNNSEA 240

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP--YVTQKGVEYIAICDKR------- 276
                 G   +   S L     + + K +    NP       G E + + D+R       
Sbjct: 241 DDAKKGGDLGFKSPSSLPSDVVDAVSKLRPGQVNPTLVRVPDGFEIVRLVDRRASQSVSA 300

Query: 277 -DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
                      ++  +    K E    + +  +R  
Sbjct: 301 ASPKIVQTHVRHILLRVGEGKSESQARQQLIDIRRQ 336



 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 17/168 (10%), Positives = 57/168 (33%), Gaps = 2/168 (1%)

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
                +  + +      Q +   + +          +   + +++   ++++ D      
Sbjct: 279 RVPDGFEIVRLVDRRASQSVSAASPKIVQTHVRHILLRVGEGKSESQARQQLIDIRRQVE 338

Query: 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEY 269
                      ++        G   ++   +  P+F+  +        +NP  T+ G   
Sbjct: 339 AGGDFEKFARTYSQDGSASQGGDLGWISPGETVPEFERAMNSLQDGQVSNPVRTEYGYHL 398

Query: 270 IAICDKRDLGGEIALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           I +  +RD  G +  +  +        K E+  ++++++LR ++ +  
Sbjct: 399 IQVLGRRDAEGSVQQQMDIARQAIGQRKAEQAYSDWLRELRDSSYVQI 446


>gi|154252183|ref|YP_001413007.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Parvibaculum
           lavamentivorans DS-1]
 gi|154156133|gb|ABS63350.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Parvibaculum
           lavamentivorans DS-1]
          Length = 287

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 32/304 (10%), Positives = 84/304 (27%), Gaps = 47/304 (15%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI---SKRIALLKLQKINGELE 73
               +++ F   P  + K    +     T+NG  I+  D+    + +     +       
Sbjct: 7   AALALILSFAAAPAFAQKDEPSADEPIATVNGTPISYSDVALADEEMGAALARLEPDVRF 66

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           +  +  LI   +     ++  +  D                                 ++
Sbjct: 67  QYLLGMLIDRRVVALAAKEKHVDDDPQVKRRQ--------------------------DY 100

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
           F +       W  ++++    +      +    K        +E   R +L         
Sbjct: 101 FNEKALRDVYWVQLMQDKVTDEA----AKAYYEKNIAGAPAEQEAHARHIL--------- 147

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKK 252
                + +  +               ++++        G   +    ++ P+F + +   
Sbjct: 148 --VQDKAKAAEIAAEIEGGKGFEEAAKEYSQDPGSADGGDLGWFKRDEMVPEFGEAVFSM 205

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
                + P  TQ G   I + + RD+            +       +   + ++KLR++A
Sbjct: 206 KPGEVSAPVQTQFGWHLIQLVELRDVP--KPTYEEAHEEIIRQLARQEGQKLMEKLRTDA 263

Query: 313 IIHY 316
            I  
Sbjct: 264 KIEI 267


>gi|167617958|ref|ZP_02386589.1| survival protein SurA, putative [Burkholderia thailandensis Bt4]
          Length = 448

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 46/336 (13%), Positives = 113/336 (33%), Gaps = 31/336 (9%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAM-------SSRIRTTINGEVITDGDISKRIA 61
           +   ++       L+   I    S  + A+       +  +   +N +VIT  ++ +R+ 
Sbjct: 1   MKKTLRFAAVAAGLVASLITVAPSASAQALRAQGASLADEVVAVVNNDVITGRELDQRVG 60

Query: 62  LLKLQKING--------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
           L+  +            +L    + ++++E ++ Q  +  GI  D+ TV     + A+  
Sbjct: 61  LIARRLQQQKAPVPPTDQLRAQVLNQMVLERIQVQRAKDDGIVVDNATVQATLGRLAQAN 120

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK-N 172
           G+  + + + ++ QG+  + F +    + +   + + +   K    + E+ +     +  
Sbjct: 121 GMPLDQYKARIEAQGVPWDLFVRDARTELMLSKLREKEVDSKITVSDAEVASYIASQRGP 180

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH----D 228
               +  +R     +       Q  +    K AE    +        E+ A+        
Sbjct: 181 NAGAQQDLRLEHIFVKAPTNAPQADIDAAQKKAEGLLQQALASGTNFERLATSQSEADDA 240

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP--YVTQKGVEYIAICDKR----DLGGEI 282
              G   +   S L     + + K +    NP       G E + + D+R          
Sbjct: 241 KKGGDLGFKAPSSLPSDVVDAVSKLRPGEVNPTLIRVPDGFEIVRLVDRRASQNPAASPK 300

Query: 283 ALKAYLSAQNT---PTKIEKHEAEYVKKLRSNAIIH 315
            ++ ++          K E    + +  +R    I 
Sbjct: 301 IVQTHVRHILLRVGEGKSESQARQQLIDIRRQ--IE 334



 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 16/156 (10%), Positives = 54/156 (34%), Gaps = 2/156 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +     +    + +          +   + +++   ++++ D                 +
Sbjct: 287 VDRRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDIRRQIEAGGDFEKFARTY 346

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           +        G   ++   +  P+F+  +        +NP  T+ G   I +  +RD  G 
Sbjct: 347 SQDGSASQGGDLGWISPGETVPEFERAMNALQDGQVSNPVRTEYGYHLIQVLGRRDAEGS 406

Query: 282 IALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +  +  +        K E+  ++++++LR ++ +  
Sbjct: 407 VQQQMDIARQAIGQRKAEQAYSDWLRELRDSSYVQI 442


>gi|149191632|ref|ZP_01869876.1| parvulin-like peptidyl-prolyl isomerase [Vibrio shilonii AK1]
 gi|148834532|gb|EDL51525.1| parvulin-like peptidyl-prolyl isomerase [Vibrio shilonii AK1]
          Length = 419

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 34/296 (11%), Positives = 100/296 (33%), Gaps = 12/296 (4%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------LEKIAVQE 79
           + + +        R+R  +N  VI   DI      L       +        +++  + +
Sbjct: 1   MALHAIAEPVELDRVRVIVNDGVILQSDIDSATKTLTANARKNDQELPSADIIQEQILDK 60

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           LI+E L+ QE ++ G+  D N +       A+N   + E     + ++G+    F++ + 
Sbjct: 61  LILEKLQLQEADRIGVRIDDNRLESTLNDIAKNNNQTIEQLRQTVREEGLTWEAFREQIR 120

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
            +    +        +   L  E+    + +   +      +     +  N  +++   +
Sbjct: 121 DEIAASEARNAMVRQRINILPAEVDNLAELLAKESDATVTYKIRHIQLRFNDGEDKSVQE 180

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTT 258
           ++ KD                 ++     +  G   ++ + ++   F +    +++    
Sbjct: 181 QQAKDLVARLKSGEDFATMAYTYSKGPKALEGGDWGWMRKEEMPTIFADQIKMQTKGTII 240

Query: 259 NPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            P+ +  G   + I D +    +        ++  + T    ++     +  + + 
Sbjct: 241 GPFRSGVGFHILKIEDVKGLETVSVTEVNARHILIKPTVILSDEGVQRELNNIIAK 296



 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/269 (11%), Positives = 79/269 (29%), Gaps = 4/269 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++     LL  +       KI   +L     + + +++         +        
Sbjct: 139 ILPAEVDNLAELLAKESDATVTYKIRHIQLRFNDGEDKSVQEQQAKDLVARLKSGEDFAT 198

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                S    +      G         +    I               +   I   +   
Sbjct: 199 MAYTYSKGPKALEGGDWGWMRKEEMPTIFADQIKMQTKGTIIGPFRSGVGFHILKIEDVK 258

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK-LEKFASKI-HD 228
              TV    +      I    + +   VQ+ + +             +  E+++      
Sbjct: 259 GLETVSVTEVNARHILIKPTVILSDEGVQRELNNIIAKVQSGESTFAEMAEQYSQDPGSA 318

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDL-GGEIALKA 286
           V  G+  Y       P+F++ ++       + P+ T  G   + + D+RD+     A++ 
Sbjct: 319 VQGGELGYQTPELYVPEFKHQVETLPIGQISKPFKTVHGWHIVEVLDRRDVDKTGSAMQN 378

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                    K  +  + ++++LR++A + 
Sbjct: 379 RAYRILFNRKFNEEASAWIQELRASAFVE 407


>gi|144897576|emb|CAM74440.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 421

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 94/278 (33%), Gaps = 9/278 (3%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK-- 74
                      + + S     M  R+   IN E I+  D+  R+ L  +     + ++  
Sbjct: 5   IVLTCATAALALTLWSGAQAQMLDRVVAVINDEAISYRDVEARVRLALVSSNIPDSQEAR 64

Query: 75  -----IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
                  ++++I E L+ QE ++  I   +  V+       + + +      S L +QG+
Sbjct: 65  QRVVPQVLRKMIDERLQLQEAQRLSIVLSNADVDGAIATIEQQSRMPRGALLSNLARQGV 124

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                ++ +     W  +V      +    E E+    Q + +      +    +F   +
Sbjct: 125 DPARVREQIRADLTWMRLVTRVIGPQIRIGEEEVNDRLQSLADRQGLREVRAAEIFLPVE 184

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
           +  Q     +   +  +E   +     +   +F+      + G   ++ +  +  +   +
Sbjct: 185 SPDQE-AEARAMGERLQEGLRQGTSFQSLARQFSRSPTSSNGGLLGWVSQGMVDDEVAAV 243

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA 286
                +  T+    T  G   + + + R +G  +  + 
Sbjct: 244 LETLDRGQTSQLVRTSTGFYLLQVLETRIIGQSVNAED 281



 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 44/118 (37%), Gaps = 2/118 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNT 257
           +  + +   +  R  K C + +  A+K       +   +   +L P+ + ++   + N  
Sbjct: 300 KADLMERAFALTRNAKSCAEFDALATKAGAPLPPRQGPVRIGELPPELKGMVAGMAANQV 359

Query: 258 TNPYVTQKGVEYIAICDKRDLGG-EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             P  T +G+    +C ++D           +  Q    + +     Y++ LR  A I
Sbjct: 360 GVPMDTPQGIMVPMVCSRQDAMVVSPPTAEQVRRQIEDERRDMLSRRYLRNLRRAAFI 417


>gi|261378504|ref|ZP_05983077.1| SurA/PPIASE domain protein [Neisseria cinerea ATCC 14685]
 gi|269145052|gb|EEZ71470.1| SurA/PPIASE domain protein [Neisseria cinerea ATCC 14685]
          Length = 331

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 34/286 (11%), Positives = 80/286 (27%), Gaps = 17/286 (5%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT   +++ +A  K     G       L +  + +L+ ++L  Q  ++
Sbjct: 54  SDGIAAVADNEVITRRRLAQAVADAKANLPKGVQISDTALTEQVLMQLVNQSLIVQAGKR 113

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
                +                      +    +        K           V + + 
Sbjct: 114 R----NIQAGEAEIAAVVAQNPSLKNLSAEQRRELADSIIAEKVRQQAVMQNSRVSEAEV 169

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
                    E    +             R     I  +        +  I+         
Sbjct: 170 DRFI-----EQAQKQGVTLPEGEPMRQYRAQHILIKADSENAAVGAESTIRKIYGEARSG 224

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
               +   +++      + G   +  +  + P F+  ++       + P  TQ G   I 
Sbjct: 225 TDFSSLARQYSQDASAGNGGDLGWFADGVMVPAFEETVRSLKPGQVSAPVRTQFGWHIIK 284

Query: 272 ICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           + + R+    +  ++  +       K E+  A+ ++ L S A +  
Sbjct: 285 LNEVREAGTPQERVRNAVRQYIFQQKAERATADLLRDLHSGAYVDI 330


>gi|206559288|ref|YP_002230049.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia J2315]
 gi|198035326|emb|CAR51201.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia J2315]
          Length = 442

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 99/302 (32%), Gaps = 22/302 (7%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------LEKIAVQELIVE 83
             +   ++  +   +N +VIT  ++ +R+ L+  +             L    + ++++E
Sbjct: 22  GSQGAQLADEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPADQLRGQVLNQMVLE 81

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            ++ Q+ +  GI  D  TV     + A+  G++ + + + L+ QG+  + F      +  
Sbjct: 82  RIQVQKAKDDGIRVDDATVQATLQRLAQANGMTLDQYRARLEAQGVPWSIFTNDARTELT 141

Query: 144 WPDVVKNDFMLKYGNLEMEIPAN----KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
              + + +   K    + E+       +    +           + +  +    +    Q
Sbjct: 142 LSKLREREVDGKITVSDAEVANYIASQRGPNASQQQDLRFQHIFIKAPTNAPQADIEAAQ 201

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN 259
           K+ +   +            +  +        G   +   S L         K +    N
Sbjct: 202 KKAEALLQQAKSGADFERLAKNNSEANDAKKGGDLGFKSPSALPADVVEAASKLRPGQVN 261

Query: 260 P--YVTQKGVEYIAICDKRDLGGEIALK--------AYLSAQNTPTKIEKHEAEYVKKLR 309
           P       G E + + D+R   G  A           ++  +    K E    + +  +R
Sbjct: 262 PTLIRVPDGFEIVRLVDRRQSQGASAAAPKIVQTHVRHILLRVGEGKSEGQARQQLVDIR 321

Query: 310 SN 311
           + 
Sbjct: 322 NQ 323



 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/287 (10%), Positives = 90/287 (31%), Gaps = 19/287 (6%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           ++G+ IT  D ++    +  Q+     ++  +       +K            +      
Sbjct: 150 VDGK-ITVSD-AEVANYIASQRGPNASQQQDL-RFQHIFIKAPTNAPQADIEAAQKKAEA 206

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN--------------D 151
            +Q A++         +  +           + +  ++  DVV+                
Sbjct: 207 LLQQAKSGADFERLAKNNSEANDAKKGGDLGFKSPSALPADVVEAASKLRPGQVNPTLIR 266

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
               +  + +      Q       +          +   + +++G  ++++ D       
Sbjct: 267 VPDGFEIVRLVDRRQSQGASAAAPKIVQTHVRHILLRVGEGKSEGQARQQLVDIRNQVEA 326

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                     ++        G   ++   +  P+F+  +        + P  T+ G   I
Sbjct: 327 GGDFAKFARTYSQDGSASQGGDLGWISPGETVPEFERAMNNLQDGQISQPIRTEYGYHLI 386

Query: 271 AICDKRDLGGEIALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + ++R+  G +  +  +        K E+  A+++++LR ++ + Y
Sbjct: 387 QVLNRREAEGSVQQQMDIARQAIGQRKAEQAYADWLRELRDSSYVQY 433


>gi|152982039|ref|YP_001352108.1| peptidyl-prolyl cis-trans isomerase SurA [Janthinobacterium sp.
           Marseille]
 gi|151282116|gb|ABR90526.1| peptidyl-prolyl cis-trans isomerase SurA [Janthinobacterium sp.
           Marseille]
          Length = 469

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 34/312 (10%), Positives = 96/312 (30%), Gaps = 32/312 (10%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--------ELEKIAVQELIVE 83
           +     ++  I   +N EVIT  D  +R  +++ +  +         +L++  ++ +IVE
Sbjct: 42  AAVQPRLADAIIVVVNNEVITRYDFLERYKMIEARLQSQGGNLPPREQLQRQLLERMIVE 101

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
             + Q+ +++GI  D   ++    + A    LS  +F   L++ G+  + F+  +  +  
Sbjct: 102 RAQLQQAKETGIKIDDTMLDRAMGRIAEQNKLSMPEFRKRLEEDGLVYSKFRNEIRDEMA 161

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV----LFSIPDNKLQNQGFVQ 199
              + + +   K    ++EI A                 +    +    +   +     +
Sbjct: 162 IQRLREREVDNKVQVSDVEIDAYMAAHNAPAATAPQELHIAQILIRVPENATQKQLADSK 221

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTT 258
           +R  +                 ++     ++ G+  +     L   F             
Sbjct: 222 RRADEVVAQLAAGADFAKLASAYSDGTDGLTGGELGWRSAERLPQLFVDATANLQDGQIA 281

Query: 259 NPYVTQKGVEYIAICDKRDLG-------------------GEIALKAYLSAQNTPTKIEK 299
               +  G   + +  +R                       +    +++  +        
Sbjct: 282 PIVKSGNGFHILKLLGRRTQSVLRADGGASGATAAAAPAAVKQTHASHILIKVNQVVSAA 341

Query: 300 HEAEYVKKLRSN 311
                + +L+  
Sbjct: 342 EARRKLLELKQR 353



 Score = 97.4 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 13/139 (9%), Positives = 48/139 (34%), Gaps = 2/139 (1%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
             + +    +  +      +K ++  +    +        + +++       G   ++  
Sbjct: 326 HASHILIKVNQVVSAAEARRKLLELKQRLDNKAATFEELAKLYSNDFSAAKGGDLGWIYP 385

Query: 240 SDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL-SAQNTPTKI 297
            D  P+F+  +        + P  +  G   I + +++        +  +        K+
Sbjct: 386 GDTVPEFERAMDALPIGQVSEPIESPFGYHLILVTERKSDDVSQERQRMIARQAIREQKV 445

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           E+   ++++++R  A + Y
Sbjct: 446 EEATQDWLRQVRDRAYVEY 464


>gi|160901465|ref|YP_001567047.1| SurA domain-containing protein [Delftia acidovorans SPH-1]
 gi|160367049|gb|ABX38662.1| SurA domain [Delftia acidovorans SPH-1]
          Length = 475

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 100/299 (33%), Gaps = 18/299 (6%)

Query: 31  VSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL-------QKINGEL-EKIAVQELIV 82
            +      +  I   +N E +T+ ++  R+A +         Q     L  +  ++ LIV
Sbjct: 61  GAKAGVRSADYIVAVVNSEPVTNNEVRARMARVAQNIAEQGGQMPPEALLAREVLERLIV 120

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           E  + QE + +G+  D   V+      AR  GL      S L  +G+ +  F++ L  Q 
Sbjct: 121 EKAQLQEAKDTGLRVDDYAVDQALTNVARQNGLDKAGLQSRLRAEGVNEKQFREELRRQI 180

Query: 143 IWPDVVKNDFMLKYGNLEMEIPAN--KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
               + + D   +    + +I     +Q+          +      I   +  +   V +
Sbjct: 181 TLQRLRERDVDGRVRVTDADIDRYLAEQRSGGADKAPAAVNLGHILISVPENASPAEVAE 240

Query: 201 RIKDAEESRLRLPKDCNKL---EKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNN 256
           R   A+++        + L   ++F+        G             F + + + +Q  
Sbjct: 241 REARAKQAAEAARTQGDFLAVVKEFSDVPDGQGGGAMGMRPLDRYPELFTKAVGQTAQGG 300

Query: 257 TTNPYVTQKGVEYIAICDKRDLG----GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
              P+ +  G   + + +K   G           ++  +      E   A+ +   +  
Sbjct: 301 IVGPFRSGAGFHVLKVLEKSQAGMPSVVTQNHARHILLRIGDQMTEADAAKRLADYKRR 359



 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 91/282 (32%), Gaps = 12/282 (4%)

Query: 46  INGEV-ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           ++G V +TD DI + +A  +    +     + +  +++   +     +            
Sbjct: 190 VDGRVRVTDADIDRYLAEQRSGGADKAPAAVNLGHILISVPENASPAEVAEREARAKQAA 249

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND--------FMLKY 156
              +   +     ++FS   D QG G    +       ++   V           F    
Sbjct: 250 EAARTQGDFLAVVKEFSDVPDGQGGGAMGMRPLDRYPELFTKAVGQTAQGGIVGPFRSGA 309

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
           G   +++    Q      V +   R +L  I D   +     +           +     
Sbjct: 310 GFHVLKVLEKSQAGMPSVVTQNHARHILLRIGDQMTEADAAKRLADYKRRVDSGQASF-E 368

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK 275
           +   +F+      + G   +       P+F+ +L        ++P V++ GV  I + ++
Sbjct: 369 SLAREFSQDGSARNGGDLGWASPGQFVPEFEQVLNALQPGQVSDPLVSRFGVHLIQLIER 428

Query: 276 RDLG-GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           R         +  +       K+E     ++++LR  A + Y
Sbjct: 429 RQAALTPREQRDMVRNVVRERKLETDYQAWLQELRGRAYVEY 470


>gi|154706423|ref|YP_001425383.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii Dugway
           5J108-111]
 gi|154355709|gb|ABS77171.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii Dugway
           5J108-111]
          Length = 321

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 62/327 (18%), Positives = 112/327 (34%), Gaps = 19/327 (5%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI---- 56
           M  K+ TS+   +    T         +P  +        +I   +N E+IT  ++    
Sbjct: 1   MWKKILTSMVIILS--VTSISAFAQSTLPAPNATHEQSLDQIVAVVNDEIITQSELNHAL 58

Query: 57  ----SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
                + +            +K  + +LI + L+ Q  + + I   +N +N    + ++ 
Sbjct: 59  TAAKQQFMQRQISLPDQKTFKKQVLDQLIYQKLQLQVAKHNQIKVTNNEINAAVARISQA 118

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
             LS       L ++GI    F+  L  Q I   +            + +I A +++   
Sbjct: 119 NHLSQTALKQKLTQEGISYKEFRSQLQKQLIISKLQHQALQDTISINKSDIAAFQKQHAG 178

Query: 173 IT-VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
                EY I T+L  +P +  Q Q    K        +L+         K          
Sbjct: 179 QIASTEYHIATILIPLPASATQAQINHAKGKAALVLKQLQKGSSFETAMK-----MHPGS 233

Query: 232 GKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA 290
               +    +L   F + +LK   N  T P     G   I + DK            +  
Sbjct: 234 ADLGWRSAKELPQVFVKTVLKMKPNEVTGPIQAPNGFHIIKLLDKE--AKNTVSDQQIQR 291

Query: 291 QNTPTKIEKHEAEYVKKLRSNAIIHYY 317
                K+EK   +++ +LRS+A IH Y
Sbjct: 292 IVYQQKVEKALQKWLTQLRSSAYIHIY 318


>gi|238758995|ref|ZP_04620166.1| Chaperone surA [Yersinia aldovae ATCC 35236]
 gi|238702806|gb|EEP95352.1| Chaperone surA [Yersinia aldovae ATCC 35236]
          Length = 434

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 106/296 (35%), Gaps = 16/296 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--------EL 72
           +++   +    ++ +     ++   ++  V+   D+   +  +KL              L
Sbjct: 7   LILGLVVCANTAFAAPQEVDKVAAVVDNGVVLQSDVDGLLQSVKLNAQQSGQQVPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ ++ Q  +K GIT     ++      A    ++A    S L   G+  +
Sbjct: 67  RHQILERLIMDNIQLQMAKKMGITISDEALDKAIADIAAQNRMTAAQMRSRLAADGLNYD 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            +++ +  + +  +V  N+   +   L  E+ +  +++ N T  +  +      IP  + 
Sbjct: 127 TYREQIRKEMLTSEVRNNEVRRRITILPQEVESLAKQVGNQTSGDAELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            +Q  V +    A+     +    +        ++    +  G+  +    +L   F + 
Sbjct: 187 PSQQQVDQAEDLAKRLVTEIKGGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAER 246

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKH 300
           L   ++ +   P  +  G   + + D R     +        ++  + +P   +  
Sbjct: 247 LQSANKGDVVGPIRSGVGFHILKVNDIRGADKTVSVTEVHARHILLKPSPVMTDDQ 302



 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 55/168 (32%), Gaps = 4/168 (2%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                G   +++   +   K ++V E   R +L         +Q   +     A+    +
Sbjct: 259 IRSGVGFHILKVNDIRGADKTVSVTEVHARHILLKPSPVMTDDQARAKLTAAAADIKSGK 318

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEY 269
                   ++ +      +  G   +       P F++ + K S+   + P  +  G   
Sbjct: 319 -SSFATIAKEISQDPGSAMQGGDLGWASPDIYDPAFRDAVMKLSKGEISAPVHSSFGWHL 377

Query: 270 IAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           I + D R +   + A K          K  +    ++++ R+ A +  
Sbjct: 378 IQLVDTRQVDKTDAAQKDKAYRMLFSRKFAEEAQTWMQEQRAAAYVKI 425


>gi|254247257|ref|ZP_04940578.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia PC184]
 gi|124872033|gb|EAY63749.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia PC184]
          Length = 454

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 99/302 (32%), Gaps = 22/302 (7%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------LEKIAVQELIVE 83
             +   ++  +   +N +VIT  ++ +R+ L+  +             L    + ++++E
Sbjct: 34  GSQGAQLADEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPADQLRAQVLNQMVLE 93

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            ++ Q+ +  GI  D  TV     + A+  G++ + +   L+ QG+  + F      + +
Sbjct: 94  RIQVQKAKDDGIRIDDATVQATLQRLAQANGMTLDQYRGRLEAQGVPWSIFTNDARTELM 153

Query: 144 WPDVVKNDFMLKYGNLEMEIPAN----KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
              + + +   K    + E+       +    +           + +  +    +    Q
Sbjct: 154 LSKLREREVDGKITVSDAEVANYIASQRGPNASQQQDLRFQHIFIKAPTNAPQADIEAAQ 213

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN 259
           K+     +            +  +        G   +   S L     +   K +    N
Sbjct: 214 KKADALLQQAKSGADFERLAKNNSEANDAKKGGDLGFKSPSALPADVVDAASKLRPGQVN 273

Query: 260 P--YVTQKGVEYIAICDKRDLGGEIALK--------AYLSAQNTPTKIEKHEAEYVKKLR 309
           P       G E + + D+R   G  A           ++  +    K E    + +  +R
Sbjct: 274 PTLIRVPDGFEIVRLVDRRQSQGASAAAPKIVQTHVRHILLRVGEGKSEGQARQQLIDIR 333

Query: 310 SN 311
           + 
Sbjct: 334 NQ 335



 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 29/287 (10%), Positives = 89/287 (31%), Gaps = 19/287 (6%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           ++G+ IT  D ++    +  Q+     ++  +       +K            +      
Sbjct: 162 VDGK-ITVSD-AEVANYIASQRGPNASQQQDL-RFQHIFIKAPTNAPQADIEAAQKKADA 218

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN--------------D 151
            +Q A++         +  +           + +  ++  DVV                 
Sbjct: 219 LLQQAKSGADFERLAKNNSEANDAKKGGDLGFKSPSALPADVVDAASKLRPGQVNPTLIR 278

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
               +  + +      Q       +          +   + +++G  ++++ D       
Sbjct: 279 VPDGFEIVRLVDRRQSQGASAAAPKIVQTHVRHILLRVGEGKSEGQARQQLIDIRNQVEA 338

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                     ++        G   ++   +  P+F+  +        + P  T+ G   I
Sbjct: 339 GGDFAKFARTYSQDGSASQGGDLGWISPGETVPEFERAMNNLQDGQISQPIRTEYGYHLI 398

Query: 271 AICDKRDLGGEIALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + ++R+  G +  +  +        K E+  A+++++LR ++ + Y
Sbjct: 399 QVLNRREAEGSVQQQMDIARQAIGQRKAEQAYADWLRELRDSSYVQY 445


>gi|167590259|ref|ZP_02382647.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ubonensis Bu]
          Length = 452

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 95/299 (31%), Gaps = 22/299 (7%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------LEKIAVQELIVETLK 86
              ++  +   +N +VIT  ++ +R+ L+  +             +    + ++++E ++
Sbjct: 35  GAQLTDEVVAVVNNDVITGRELDQRVGLISRRLKQQNAPVPPLDQMRAQVLNQMVLERIQ 94

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
            Q+ +  GI  D   V     + A+  G++ + + + ++ QG+  + F      + +   
Sbjct: 95  VQKAKDDGIRIDDAAVQSTLQRLAQANGMTLDQYRARIEAQGVPWSVFTGDARTELMLSK 154

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMK----NITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           + + +   K    + E+ +     +    +           + +       +    QK+ 
Sbjct: 155 LREREVDSKITVSDAEVASYIASQRGPSASQQQDLRFQHIFVKAPTSAPQADIEAAQKKA 214

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP-- 260
               +            +  +        G   +     L         + +    NP  
Sbjct: 215 DALLKQAQSGADFERLAKNNSEADDAKKGGDLGFKSPGALPADVVAAASQLRPGQVNPTL 274

Query: 261 YVTQKGVEYIAICDKRDLGGEIALK--------AYLSAQNTPTKIEKHEAEYVKKLRSN 311
                G E + + D+R   G  A           ++  +    K E    + +  +R  
Sbjct: 275 IRVPDGFEIVRLVDRRQSQGASAAAPKIVQTHVRHILLRVGEGKSEGQARQQLIDIRKQ 333



 Score =  102 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/283 (10%), Positives = 88/283 (31%), Gaps = 16/283 (5%)

Query: 48  GEVITDGDISKRIALLKLQKINGELEKIAVQ-ELIV--------ETLKKQEIEKSGITFD 98
              IT  D ++  + +  Q+     ++  ++ + I         +   +   +K+     
Sbjct: 161 DSKITVSD-AEVASYIASQRGPSASQQQDLRFQHIFVKAPTSAPQADIEAAQKKADALLK 219

Query: 99  SNTVNYFFVQHARNTGLSAEDFS--SFLDKQGIGDNHFKQYLAIQSIWPDVVKN--DFML 154
                  F + A+N   + +         K            A Q     V         
Sbjct: 220 QAQSGADFERLAKNNSEADDAKKGGDLGFKSPGALPADVVAAASQLRPGQVNPTLIRVPD 279

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
            +  + +      Q       +          +   + +++G  ++++ D  +       
Sbjct: 280 GFEIVRLVDRRQSQGASAAAPKIVQTHVRHILLRVGEGKSEGQARQQLIDIRKQVEAGGD 339

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAIC 273
                  ++        G   ++   +  P+F+  +        + P  T+ G   I + 
Sbjct: 340 FAKFARTYSQDGSASQGGDLGWISPGETVPEFERAMNNLQDGQVSIPVRTEYGYHLIQVL 399

Query: 274 DKRDLGGEIALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           ++R+  G +  +  +        K E+  A+++++LR ++ + 
Sbjct: 400 ERRESEGSVQQQMDIARQAIGQRKAEQAYADWLRELRDSSYVQ 442


>gi|300310041|ref|YP_003774133.1| parvulin-like peptidyl-prolyl cis-trans isomerase [Herbaspirillum
           seropedicae SmR1]
 gi|124483574|emb|CAM32660.1| Parvulin-like peptidyl-prolyl [Herbaspirillum seropedicae]
 gi|300072826|gb|ADJ62225.1| parvulin-like peptidyl-prolyl cis-trans isomerase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 496

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 99/292 (33%), Gaps = 20/292 (6%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQK--------INGELEKIAVQELIVETLKKQEIE 91
             I   +N EVIT  +++ R+A +  +            +L +  V+ +IVE  + Q  +
Sbjct: 90  DSIMVVVNNEVITRQEVADRLASVVKRMSAQNVQLPPRDQLVRQLVERMIVERAQAQMAK 149

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
           ++GI  D   ++    + A    LS   F + L+ +G+    F++ +  + +   + + +
Sbjct: 150 ENGIVVDDAMLDRAMQRIADQNKLSMAQFRTRLEAEGMNYASFREEIRREILSQRLRERE 209

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
              K    E E+        N   +   +      I   +      + +R + AE+   +
Sbjct: 210 VDNKVVVTESEVDNYLAAEANAGGQRQELDIAQILIRVPENATPDQLAQRRERAEDVLRQ 269

Query: 212 LPKDCNKLEKFASKIHDV---SIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGV 267
           L    +  +  A+        S G   +     L   F   + K      +    +  G 
Sbjct: 270 LKTGADFAKTAAAYSDASDALSGGDLGWRPADRLPQLFLDGVAKLQDGQVSGLLKSGNGF 329

Query: 268 EYIAICDKRDLGGEIALK--------AYLSAQNTPTKIEKHEAEYVKKLRSN 311
             + +  +R   G  A           ++  +             + +L+  
Sbjct: 330 HILKLVGRRTADGAQAAAPAVQQTHVRHILIKVNQVVTAAEAKRKLTELKER 381



 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 48/139 (34%), Gaps = 2/139 (1%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
               +    +  +      +K  +  E             + +++ +     G   ++  
Sbjct: 354 HVRHILIKVNQVVTAAEAKRKLTELKERLDHGSATFEELAKLYSNDLSASKGGDLGWVYP 413

Query: 240 SDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR-DLGGEIALKAYLSAQNTPTKI 297
            D  P+F+  + +      + P  T  G   I + +++ D   +   +          KI
Sbjct: 414 GDTVPEFERAMDQLKPGEVSQPIETPFGYHLIQVVERKTDDASKERARQAARQAIRERKI 473

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           ++   ++++++R  A + Y
Sbjct: 474 DEATEDWMRQIRDRAYVEY 492


>gi|238797487|ref|ZP_04640985.1| Chaperone surA [Yersinia mollaretii ATCC 43969]
 gi|238718628|gb|EEQ10446.1| Chaperone surA [Yersinia mollaretii ATCC 43969]
          Length = 434

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 106/296 (35%), Gaps = 16/296 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--------EL 72
           +++   +    ++ +     ++   ++  V+   D+   +  +KL              L
Sbjct: 7   LILGLVVCANTAFAAPQEVDKVAAVVDNGVVLQSDVDGLLQSVKLNAQQAGQQVPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ ++ Q  +K GIT     ++      A    ++     S L   G+  +
Sbjct: 67  RHQILERLIMDNIQLQMAKKMGITVSDEALDKAIADIAAQNRMTTAQMRSRLAADGLNYD 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            +++ +  + +  +V  N+   +   L  E+ +  +++ N T  +  +      IP  + 
Sbjct: 127 TYREQIRKEMLTSEVRNNEVRRRITILPQEVESLAKQIGNQTSADAELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            +Q  V +  + A +    +    +        ++    +  G+  +    +L   F + 
Sbjct: 187 PSQQQVDQAEELANKLVSDIKGGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAER 246

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKH 300
           L   ++ +   P  +  G   + + D R     +        ++  + +P   +  
Sbjct: 247 LQSANKGDVVGPIRSGVGFHILKVNDIRGADKTVSVTEVHARHILLKPSPVMTDDQ 302



 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 55/168 (32%), Gaps = 4/168 (2%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                G   +++   +   K ++V E   R +L         +Q   +     A+    +
Sbjct: 259 IRSGVGFHILKVNDIRGADKTVSVTEVHARHILLKPSPVMTDDQARAKLTAAAADIKSGK 318

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEY 269
                N  ++ +      V  G   +       P F++  +K  +   + P  +  G   
Sbjct: 319 ATF-ANIAKEISQDPGSAVQGGDLGWASPDIYDPAFRDALMKLQKGEISAPVHSSFGWHL 377

Query: 270 IAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           I + D R +   + A K          K  +    ++++ R+ A +  
Sbjct: 378 IQVVDTRQVDKTDAAQKDRAYRMLFSRKFAEEAQTWMQEQRAAAYVKI 425


>gi|329894605|ref|ZP_08270411.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
           isomerase SurA) [gamma proteobacterium IMCC3088]
 gi|328922959|gb|EGG30287.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
           isomerase SurA) [gamma proteobacterium IMCC3088]
          Length = 421

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 108/311 (34%), Gaps = 12/311 (3%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK----- 67
           +K L      +        +  +  +  ++   ++ +VI + ++ +R+ ++K        
Sbjct: 1   MKQLVKLAAGLALGCAISGAQAAVEILDKVIAVVDDDVIMESELQERLIVVKNNITSRGL 60

Query: 68  ---INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L +  +  LI+E+++ Q+  + GI  +   +     + A   GL+ + F   L
Sbjct: 61  EAPPEDALVRETLDRLILESIQLQKGVRYGIRIEDQQLAAAVGRLASQNGLTPQQFVDQL 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           ++ G         +  + I   V   +   +      EI A     +   + +   R + 
Sbjct: 121 EQSGGSYGELLANIEREMIIQRVQGGNVNQRIDITTAEIEAFLDTEEGQQLIQPAYRLIH 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             +  +   +     +   ++   R+   ++ N++   ++  +    G      ESDL  
Sbjct: 181 ARLDVSDDIDLDA-ARTYVESLAERINAGEEFNEVIGASTDPYQFKGGDLGIRPESDLPS 239

Query: 245 QFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHE 301
            F  +     Q +   P    +   +I + +KR            ++  + +     +  
Sbjct: 240 LFAPIAPTMEQGSFAGPIENGRSFHFIYLLEKRGGTQIIPQTSVRHILIKPSEILTNEQA 299

Query: 302 AEYVKKLRSNA 312
            E   +LR  A
Sbjct: 300 QELAAELRQRA 310



 Score = 97.4 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 84/275 (30%), Gaps = 6/275 (2%)

Query: 46  INGEV-ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           +N  + IT  +I   +   + Q++     ++    L  +     +++ +    +S     
Sbjct: 148 VNQRIDITTAEIEAFLDTEEGQQLIQPAYRLIHARL--DVSDDIDLDAARTYVESLAERI 205

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
              +       ++ D   F                   I P + +  F     N      
Sbjct: 206 NAGEEFNEVIGASTDPYQFKGGDLGIRPESDLPSLFAPIAPTMEQGSFAGPIENGRSFHF 265

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
               + +  T            I  +++      Q+   +  +  L      +   +++ 
Sbjct: 266 IYLLEKRGGTQIIPQTSVRHILIKPSEILTNEQAQELAAELRQRALDGEDFADLAREYSE 325

Query: 225 KI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEI 282
            I      G   +     + P F+  +  ++ N  T P+ +Q G   + + D+RD     
Sbjct: 326 DIGSAQEGGDLGWASPGQMVPVFEEQMSNAELNAITEPFQSQFGWHILQVMDRRDQDVTQ 385

Query: 283 -ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
              +          K ++    +++++R  A +  
Sbjct: 386 IVNRNRAQDYLHNQKYQEELEAWLQQIRDEAFVDI 420


>gi|332160260|ref|YP_004296837.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325664490|gb|ADZ41134.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 434

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 106/296 (35%), Gaps = 16/296 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--------EL 72
           +++   +    ++ +     ++   ++  V+   D+   +  +KL              L
Sbjct: 7   LILGLVVCANTAFAAPQEVDKVAAVVDNGVVLQSDVDGLLQSVKLNAQQAGQQVPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ ++ Q  +K GIT     ++      A    ++     S L   G+  +
Sbjct: 67  RHQILERLIMDNIQLQMAKKMGITISDEALDKAIADIAAQNRMTPAQMRSRLAADGLNYD 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            +++ +  + +  +V  N+   +   L  E+ +  +++ N T  +  +      IP  + 
Sbjct: 127 TYREQIRKEMLTSEVRNNEVRRRITILPQEVESLAKQIGNQTSGDAELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            +Q  V +    A++    +    +        ++    +  G+  +    +L   F + 
Sbjct: 187 PSQQQVDQAEDLAKKLVSDIKGGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAER 246

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKH 300
           L   S+ +   P  +  G   + + D R     +        ++  + +P   +  
Sbjct: 247 LQSASKGDVVGPIRSGVGFHILKVNDIRGTDKTISVTEVHARHILLKPSPVMTDDQ 302



 Score = 82.4 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 54/168 (32%), Gaps = 4/168 (2%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                G   +++   +   K I+V E   R +L         +Q   +     A+    +
Sbjct: 259 IRSGVGFHILKVNDIRGTDKTISVTEVHARHILLKPSPVMTDDQARAKLTAAAADIKSGK 318

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEY 269
                   ++ +      +  G   +       P F++  +K  +   + P  +  G   
Sbjct: 319 ANF-ATIAKEISQDPGSAMQGGDLGWASPDIYDPAFRDALMKLQKGEISAPVHSSFGWHL 377

Query: 270 IAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           I + D R +   + A K          K  +    ++++ R+ A +  
Sbjct: 378 IQVVDTRQVDKTDAAQKDRAYRMLFSRKFAEEAQTWMQEQRAAAYVKI 425


>gi|254688956|ref|ZP_05152210.1| Chaperone surA precursor [Brucella abortus bv. 6 str. 870]
 gi|260754445|ref|ZP_05866793.1| SurA domain-containing protein [Brucella abortus bv. 6 str. 870]
 gi|260674553|gb|EEX61374.1| SurA domain-containing protein [Brucella abortus bv. 6 str. 870]
          Length = 318

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 67/317 (21%), Positives = 130/317 (41%), Gaps = 9/317 (2%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +  +      +L     L     V   ++ +     ++   ++G  IT+ DI  R+A LK
Sbjct: 1   MMFARPLIASMLGAAVCLTALGTVAAPAFAAGESEVKVI--VSGNAITNSDIKHRMAFLK 58

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
           LQ+ +G L ++A  EL  E LK+ E++  GI      V+  +   A    ++    +  +
Sbjct: 59  LQRKSGNLNQLARNELTEEMLKRIEMKSRGINISDKEVDDAYAGFASRNKMTLAQLNQVM 118

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           ++ G+   HFK+Y+ +Q  W  +V   F       E E      K               
Sbjct: 119 NQSGVTPEHFKKYIMVQMGWGRLVSARFRATGMVSEQEAVQRMLKNGGKKPVATEYHLQQ 178

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
                   +    +  + +    +     ++C+   + A  I DV++     ++E  L  
Sbjct: 179 VIFVVPASKRSPALLAKRRQEANALRARFQNCDSKRQQAKGILDVTVRDLGRIIEPQLPG 238

Query: 245 QF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ------NTPTKI 297
           ++ +++     N TT P+ T+KGVE++A+C  R +  +   +   S +          K 
Sbjct: 239 EWSKDVKAAGVNRTTKPHDTEKGVEFLAVCSTRQVSDDRVAQLVFSMEGADSPAGQEKKA 298

Query: 298 EKHEAEYVKKLRSNAII 314
           E+   +YV++LR  A I
Sbjct: 299 EELSKKYVQELREKATI 315


>gi|326319525|ref|YP_004237197.1| SurA domain-containing protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323376361|gb|ADX48630.1| SurA domain protein [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 476

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 98/277 (35%), Gaps = 16/277 (5%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGELEKIAVQELIVETL 85
           ++   +  I   +N E IT+ ++  R+A ++ Q             L +  ++ LI E +
Sbjct: 64  QAARQADFIVAVVNTEPITNNEVQARLARVEHQLAAQGGERPPRQVLAREVLERLINEKI 123

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
           + Q   +SGI  D   ++      AR   +S  +    L   GI    F+  L  Q +  
Sbjct: 124 QVQMAIESGIKVDDYAISQAEQSVARQNSVSIPEMHRRLAADGISPERFRSELRNQMLIQ 183

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNI-----TVREYLIRTVLFSIPDNKLQNQGFVQK 200
            + + D   +    ++++    +  +       +  E  +  +L ++P+N        ++
Sbjct: 184 RLRERDVESRVRVTDLDVDQYMRDQQQSAISDPSKIELNLANILVAVPENATPEVVEQRR 243

Query: 201 RIKDAEESRLRLPKDCNK-LEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTT 258
           +       R+R  +D  K   + +        G+            F + + +       
Sbjct: 244 QRAQQAADRVRAGEDFAKVARELSDAPDAPIGGELGLRPADRYPDLFVRTVQQVPVGGIA 303

Query: 259 NPYVTQKGVEYIAICDK-RDLGGEIALKAYLSAQNTP 294
            P  +  G   + + ++ R      A++ ++      
Sbjct: 304 GPVRSPAGFHVLRVLERSRAGIPSSAVQTHVRHILLR 340



 Score = 97.4 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 38/106 (35%), Gaps = 2/106 (1%)

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                   + +        G   +       P+F+  ++    +  + P V++ GV  I 
Sbjct: 366 ADFATLAREHSQDGSAKQGGDLGWAGPGRYVPEFEEAVEALKPDEISQPIVSRFGVHLIQ 425

Query: 272 ICDKRDLGGEI-ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           + ++R+        +  +       K+E+    + ++ R+ A + Y
Sbjct: 426 LLERREAKLTQREQRDMVRDAVREKKLEEAFTNWAQEARARAYVEY 471


>gi|238897972|ref|YP_002923652.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465730|gb|ACQ67504.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 322

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 53/311 (17%), Positives = 113/311 (36%), Gaps = 13/311 (4%)

Query: 19  YFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE------- 71
            +VL+         + +    ++I   +N  VI   D++ R+  +K+   N         
Sbjct: 6   IYVLVWLLCSHFTVFSAPKEINKIVAIVNDSVILLSDLNHRLKAIKINANNINQSLPDDA 65

Query: 72  -LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
            L    ++ LIVE+++ Q   K G+      ++      AR   L+ +   S L  + I 
Sbjct: 66  ILRHQILERLIVESIQLQIANKIGLKIPDEDLDKIIADIARKNRLTVDQIRSKLASENIN 125

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
              ++  +  Q +  +V+KN    +   L  E+ +  + + N   +   +      IP  
Sbjct: 126 YGTYRNEIRNQILISEVLKNAVQPRINILPQEVDSLSKLILNEKNQNMELNLSQILIPLT 185

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLE---KFASKIHDVSIGKAQYLLESDLHPQFQ 247
           +  +Q  + K  K A +   +L K  N  +    +++       G   +    +L   F 
Sbjct: 186 ENPSQKEIDKAEKKANKLVSQLKKGANFAKLAIAYSADSQAFKGGTMGWKKVQELPTLFS 245

Query: 248 NLLKKSQN-NTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYV 305
             LK     +   P  +  G   + I D   +      +K          K  +    ++
Sbjct: 246 EKLKVIHKFDIIGPIRSGVGFHILRINDLHTIFENSEDIKNQAYKILFNRKFSEQAETWI 305

Query: 306 KKLRSNAIIHY 316
           ++ R++A +  
Sbjct: 306 QEQRASAYVKI 316


>gi|164685824|ref|ZP_01945801.2| putative peptidyl-prolyl cis-trans isomerase surA [Coxiella
           burnetii 'MSU Goat Q177']
 gi|165918731|ref|ZP_02218817.1| putative peptidyl-prolyl cis-trans isomerase surA [Coxiella
           burnetii RSA 334]
 gi|212219488|ref|YP_002306275.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuK_Q154]
 gi|164601340|gb|EAX33680.2| putative peptidyl-prolyl cis-trans isomerase surA [Coxiella
           burnetii 'MSU Goat Q177']
 gi|165917559|gb|EDR36163.1| putative peptidyl-prolyl cis-trans isomerase surA [Coxiella
           burnetii RSA 334]
 gi|212013750|gb|ACJ21130.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuK_Q154]
          Length = 321

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 61/327 (18%), Positives = 112/327 (34%), Gaps = 19/327 (5%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI---- 56
           M  K+ TS+   +    T         +P  +        +I   +N E+IT  ++    
Sbjct: 1   MWKKILTSMVIILS--VTSISAFAQSTLPAPNATHEQSLDQIVAVVNDEIITQSELNHAL 58

Query: 57  ----SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
                + +            +K  + +LI + L+ Q  + + I   +N +N    + ++ 
Sbjct: 59  TAAKQQFMQRQISLPDQKTFKKQVLDQLIYQKLQLQVAKHNQIKVTNNEINAAVARISQA 118

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
             LS       L ++GI    F+  L  Q I   +            + +I A +++   
Sbjct: 119 NHLSQTALKQKLTQEGISYKEFRSQLQKQLIISKLQHQALQDTISINKSDIAAFQKQHAG 178

Query: 173 IT-VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
                EY I T+L  +P +  Q Q    K        +L+         K          
Sbjct: 179 QIASTEYHIATILIPLPASATQAQINHAKGKAALVLKQLQKGSSFETAMK-----MHPGS 233

Query: 232 GKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA 290
               +    +L   F + +LK   N  T P     G   + + DK            +  
Sbjct: 234 ADLGWRSAKELPQVFVKTVLKMKPNEVTGPIQAPNGFHIVKLLDKE--AKNTVSDQQIQR 291

Query: 291 QNTPTKIEKHEAEYVKKLRSNAIIHYY 317
                K+EK   +++ +LRS+A IH Y
Sbjct: 292 IVYQQKVEKALQKWLTQLRSSAYIHIY 318


>gi|167568839|ref|ZP_02361713.1| survival protein SurA, putative [Burkholderia oklahomensis C6786]
          Length = 449

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 37/333 (11%), Positives = 105/333 (31%), Gaps = 23/333 (6%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
             K     +    L+ +   +        +  +  +++  +   +N +VIT  ++ +R+ 
Sbjct: 1   MKKTLRFAAVASGLVASLITVAPAASAQALRAQGASLADEVVAVVNNDVITGRELDQRVG 60

Query: 62  LLKLQKING--------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
           L+  +            +L    + ++++E ++ Q  +  GI  D+ TV     + A+  
Sbjct: 61  LIARRLQQQKAPVPPIDQLRAQVLNQMVLERIQIQRAKDDGIVVDNATVQATLGRLAQAN 120

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
           G+  + + + ++ QG+  + F +    + +   + + +   K    + E+ +     +  
Sbjct: 121 GMPLDQYKARIEAQGVPWDVFVRDARTELMLSKLREKEVDGKITVSDAEVASYIASQRGP 180

Query: 174 TVREYLIRTVLFSIPDNKLQNQG-----FVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
                    +                    +K     +++           +  +     
Sbjct: 181 NAGSQQDLRLEHIFVKAPTSAPQADIDVAQKKAEGLLQQALASGADFERLAKNNSEADDA 240

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP--YVTQKGVEYIAICDKR--------DL 278
              G   +   S L     + + K +    NP       G E + + D+R          
Sbjct: 241 KKGGDLGFKSPSSLPSDVVDAVSKLRPGQVNPTLVRVPDGFEIVRLVDRRASQSVSAASP 300

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
                   ++  +    K E    + +  +R  
Sbjct: 301 KIVQTHVRHILLRVGEGKSESQARQQLIDIRRQ 333



 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 17/168 (10%), Positives = 57/168 (33%), Gaps = 2/168 (1%)

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
                +  + +      Q +   + +          +   + +++   ++++ D      
Sbjct: 276 RVPDGFEIVRLVDRRASQSVSAASPKIVQTHVRHILLRVGEGKSESQARQQLIDIRRQVE 335

Query: 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEY 269
                      ++        G   ++   +  P+F+  +        +NP  T+ G   
Sbjct: 336 AGGDFEKFARTYSQDGSASQGGDLGWISPGETVPEFERAMNSLQDGQVSNPVRTEYGYHL 395

Query: 270 IAICDKRDLGGEIALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           I +  +RD  G +  +  +        K E+  ++++++LR ++ +  
Sbjct: 396 IQVLGRRDAEGSVQQQMDIARQAIGQRKAEQAYSDWLRELRDSSYVQI 443


>gi|307300974|ref|ZP_07580743.1| SurA domain protein [Sinorhizobium meliloti BL225C]
 gi|307317709|ref|ZP_07597147.1| SurA domain protein [Sinorhizobium meliloti AK83]
 gi|306896471|gb|EFN27219.1| SurA domain protein [Sinorhizobium meliloti AK83]
 gi|306903929|gb|EFN34515.1| SurA domain protein [Sinorhizobium meliloti BL225C]
          Length = 315

 Score =  122 bits (305), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 88/307 (28%), Positives = 144/307 (46%), Gaps = 7/307 (2%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           I  L +   L     V   +  +   +S +   +N  VIT GD++KR+A LKLQ+ +G  
Sbjct: 8   IVRLLSAVALAGALSVAAGTVTTAMAASTVEVVVNSTVITSGDVAKRVAFLKLQRQSGGA 67

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            + A Q+L+ E LK+ EI +   +  ++ V+  F + A    LS E     LD+ G+G +
Sbjct: 68  AE-AKQQLVDEVLKRAEIARVQQSVSTDEVDAAFARFAAGNKLSPEQLGKILDQAGVGVD 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
           HFKQY+A+Q  WP VV   +         ++     +                     + 
Sbjct: 127 HFKQYIAVQMSWPRVVNFRYGSASRLSGGDLVKRMMQGGGNKPVTTEYFLQQVIFVIPES 186

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
           +      KR  +A  SR + P   +  + FA+   DVSI     +L   L   ++ L++K
Sbjct: 187 KRGAITAKRQAEANASRSQFPGC-DTSKAFAANYRDVSIRSLGRILAQQLPEDWKPLVEK 245

Query: 253 S-QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK----HEAEYVKK 307
           +    TT   VT+KGVEY+AIC KR +  + A +    A++   K  +    + A+Y+++
Sbjct: 246 AGDGMTTGTRVTEKGVEYLAICKKRQVNDDAAAEIVFRAEDLGKKKSEGEDPNSAKYLEE 305

Query: 308 LRSNAII 314
           LRS A I
Sbjct: 306 LRSKAQI 312


>gi|254693438|ref|ZP_05155266.1| Chaperone surA precursor [Brucella abortus bv. 3 str. Tulya]
 gi|261213691|ref|ZP_05927972.1| SurA domain-containing protein [Brucella abortus bv. 3 str. Tulya]
 gi|260915298|gb|EEX82159.1| SurA domain-containing protein [Brucella abortus bv. 3 str. Tulya]
          Length = 318

 Score =  122 bits (305), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 67/317 (21%), Positives = 130/317 (41%), Gaps = 9/317 (2%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +  +      +L     L     V   ++ +     ++   ++G  IT+ DI  R+A LK
Sbjct: 1   MMFARPLIASMLGAAVFLTALGTVAAPAFAAGESEVKVI--VSGNAITNSDIKHRMAFLK 58

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
           LQ+ +G L ++A  EL  E LK+ E++  GI      V+  +   A    ++    +  +
Sbjct: 59  LQRKSGNLNQLARNELTEEMLKRIEMKSRGINISDKEVDDAYAGFASRNKMTLAQLNQVM 118

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           ++ G+   HFK+Y+ +Q  W  +V   F       E E      K               
Sbjct: 119 NQSGVTPEHFKKYIMVQMGWGRLVSARFRATGMVSEQEAVQRMLKNGGKKPVATEYHLQQ 178

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
                   +    +  + +    +     ++C+   + A  I DV++     ++E  L  
Sbjct: 179 VIFVVPASKRSPALLAKRRQEANALRARFQNCDSTRQQAKGILDVTVRDLGRIIEPQLPG 238

Query: 245 QF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ------NTPTKI 297
           ++ +++     N TT P+ T+KGVE++A+C  R +  +   +   S +          K 
Sbjct: 239 EWSKDVKAAGVNRTTKPHDTEKGVEFLAVCSTRQVSDDRVAQLVFSMEGADSPAGQEKKA 298

Query: 298 EKHEAEYVKKLRSNAII 314
           E+   +YV++LR  A I
Sbjct: 299 EELSKKYVQELREKATI 315


>gi|123440995|ref|YP_001004984.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122087956|emb|CAL10744.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
           isomerase) [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318607170|emb|CBY28668.1| survival protein SurA precursor (Peptidyl-prolyl cis-trans
           isomerase SurA) [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 434

 Score =  122 bits (305), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 106/296 (35%), Gaps = 16/296 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--------EL 72
           +++   +    ++ +     ++   ++  V+   D+   +  +KL              L
Sbjct: 7   LILGLVVCANTAFAAPQEVDKVAAVVDNGVVLQSDVDGLLQSVKLNAQQAGQQVPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ ++ Q  +K GIT     ++      A    ++     S L   G+  +
Sbjct: 67  RHQILERLIMDNIQLQMAKKMGITISDEALDKAIADIAAQNRMTPAQMRSRLAADGLNYD 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            +++ +  + +  +V  N+   +   L  E+ +  +++ N T  +  +      IP  + 
Sbjct: 127 TYREQIRKEMLTSEVRNNEVRRRITILPQEVESLAKQIGNQTSGDAELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            +Q  V +    A++    +    +        ++    +  G+  +    +L   F + 
Sbjct: 187 PSQQQVDQAEDLAKKLVSDIKGGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAER 246

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKH 300
           L   S+ +   P  +  G   + + D R     +        ++  + +P   +  
Sbjct: 247 LQSASKGDVVGPIRSGVGFHILKVNDIRGADKTISVTEVHARHILLKPSPVMTDDQ 302



 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 54/168 (32%), Gaps = 4/168 (2%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                G   +++   +   K I+V E   R +L         +Q   +     A+    +
Sbjct: 259 IRSGVGFHILKVNDIRGADKTISVTEVHARHILLKPSPVMTDDQARAKLTAAAADIKSGK 318

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEY 269
                   ++ +      +  G   +       P F++  +K  +   + P  +  G   
Sbjct: 319 ANF-ATIAKEISQDPGSAMQGGDLGWASPDIYDPAFRDALMKLQKGEISAPVHSSFGWHL 377

Query: 270 IAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           I + D R +   + A K          K  +    ++++ R+ A +  
Sbjct: 378 IQVVDTRQVDKTDAAQKDRAYRMLFSRKFAEEAQTWMQEQRAAAYVKI 425


>gi|215919309|ref|NP_820955.2| putative peptidyl-prolyl cis-trans isomerase surA [Coxiella
           burnetii RSA 493]
 gi|206584194|gb|AAO91469.2| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii RSA 493]
          Length = 321

 Score =  122 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 62/327 (18%), Positives = 113/327 (34%), Gaps = 19/327 (5%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI---- 56
           M  K+ TS+   +    T         +P  +        +I   +N E+IT  ++    
Sbjct: 1   MWKKILTSMVIILS--VTSISAFAQSTLPAPNATHEQSLDQIVAVVNDEIITQSELNHAL 58

Query: 57  ----SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
                + +            +K  + +LI + L+ Q  + + I   +N +N    + ++ 
Sbjct: 59  TAAKQQFMQRQISLPDQKTFKKQVLDQLIYQKLQLQVAKHNQIKVTNNEINAAVARISQA 118

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
             LS       L ++GI    F+  L  Q I   +            + +I A +++   
Sbjct: 119 NHLSQTALKQKLTQEGISYKEFRSQLQKQLIISKLQHQALQDTISINKSDIAAFQKQHAG 178

Query: 173 IT-VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
               +EY I T+L  +P +  Q Q    K        +L+         K          
Sbjct: 179 QIASKEYHIATILIPLPASATQAQINHAKGKAALVLKQLQKGSSFETAMK-----MHPGS 233

Query: 232 GKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA 290
               +    +L   F + +LK   N  T P     G   I + DK            +  
Sbjct: 234 ADLGWRSAKELPQVFVKTVLKMKPNEVTGPIQAPNGFHIIKLLDKE--AKNTVSDQQIQR 291

Query: 291 QNTPTKIEKHEAEYVKKLRSNAIIHYY 317
                K+EK   +++ +LRS+A IH Y
Sbjct: 292 IVYQQKVEKALQKWLTQLRSSAYIHIY 318


>gi|167814327|ref|ZP_02446007.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 91]
 gi|122070637|sp|Q63X78|SURA_BURPS RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
          Length = 448

 Score =  122 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 38/336 (11%), Positives = 112/336 (33%), Gaps = 35/336 (10%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMS-----------SRIRTTINGEVITDGDISKRIA 61
           +K +  +  +    +  +++    A +             +   +N +VIT  ++ +R+ 
Sbjct: 1   MKKILRFAAVASGLVASLITVAPSASAQALRAQGASLADEVVAVVNNDVITGRELDQRVG 60

Query: 62  LLKLQKING--------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
           L+  +            +L    + ++++E ++ Q  +  GI  D+ TV     + A+  
Sbjct: 61  LIARRLQQQKAPVPPTDQLRAQVLNQMVLERIQVQRAKDDGIVVDNATVQATLGRLAQAN 120

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK-N 172
           G+  + + + ++ QG+  + F +    + +   + + +   K    + E+ +     +  
Sbjct: 121 GMQLDQYKARIEAQGVPWDLFVRDARTELMLSKLREKEVDSKITVSDAEVASYIASQRGP 180

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFV----QKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +  +R     +       Q  +    +K     +++           +  +     
Sbjct: 181 NAGSQQDLRLEHIFVKAPANAPQADIDVAQKKAEGLLQQALASGANFERLAKNQSEADDA 240

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP--YVTQKGVEYIAICDKR----DLGGEI 282
              G   +   + L     + + K +    NP       G E + + ++R          
Sbjct: 241 KKGGDLGFKSPASLPSDVVDAVSKLRPGEVNPTLIRVPDGFEIVRLVERRASQNPAASPK 300

Query: 283 ALKAYLSAQNT---PTKIEKHEAEYVKKLRSNAIIH 315
            ++ ++          K E    + +  +R    I 
Sbjct: 301 IVQTHVRHILLRVGEGKSESQARQQLIDIRRQ--IE 334



 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 16/156 (10%), Positives = 54/156 (34%), Gaps = 2/156 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +     +    + +          +   + +++   ++++ D                 +
Sbjct: 287 VERRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDIRRQIESGGDFEKFARTY 346

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           +        G   ++   +  P+F+  +        +NP  T+ G   I +  +RD  G 
Sbjct: 347 SQDGSASQGGDLGWISPGETVPEFERAMNTLQDGQVSNPVRTEYGYHLIQVLGRRDAEGS 406

Query: 282 IALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +  +  +        K E+  ++++++LR ++ +  
Sbjct: 407 VQQQMDIARQAIGQRKAEQAYSDWLRELRDSSYVQI 442


>gi|262275062|ref|ZP_06052873.1| peptidyl-prolyl cis-trans isomerase SurA [Grimontia hollisae CIP
           101886]
 gi|262221625|gb|EEY72939.1| peptidyl-prolyl cis-trans isomerase SurA [Grimontia hollisae CIP
           101886]
          Length = 432

 Score =  122 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 92/289 (31%), Gaps = 15/289 (5%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGE------LEKIAVQELIVETLKKQEIEKS 93
            R+   +N  VI   DI      + L            LE+  + +LI+E L+ QE ++ 
Sbjct: 28  DRVVAVVNDGVILSSDIDALEKTVALNADQANLPPKDVLEQQILDQLILEELQLQEAKRL 87

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
           GI  D   +       A+   LS       L + GI  + ++  +  +    +       
Sbjct: 88  GIRIDDTRLEQAINSIAKERNLSVSQLQERLKRNGISWSSYRDQIRREMTISEARNAQVR 147

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN---KLQNQGFVQKRIKDAEESRL 210
            +   L  E+ +   ++    +     R     +  N   + + +  V +      +   
Sbjct: 148 RRISILPQEVESLASQLNAKNLENVEYRLSHIQLRLNEGAEKEEREIVAETANRLVKELK 207

Query: 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS-QNNTTNPYVTQKGVEY 269
                       +     +  G   ++   ++   F + +K + +     P+ +  G   
Sbjct: 208 DGRDFAALALANSKGPKALQGGDWGWMRLEEMPTIFADQIKNNGKGAIIGPFRSGVGYHI 267

Query: 270 IAICDK---RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           + I D    + +        ++  + +    +      + ++   A I 
Sbjct: 268 LKITDVKGLKSVAVTEVKARHILIKPSIVLSDDGAKRQLNQMI--AQIK 314



 Score = 86.7 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 51/137 (37%), Gaps = 3/137 (2%)

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLES 240
             +   P   L + G  ++  +   + +       +  +++++     V  G   +    
Sbjct: 287 RHILIKPSIVLSDDGAKRQLNQMIAQIKKGEKSFEDLAKQYSADPGSAVKGGDLGWQTSE 346

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG-GEIALKAYLSAQNTPTKIE 298
              P+F++ +    +   + P+ T  G   + + D+R     + A++          K  
Sbjct: 347 LYVPEFKDKVDTLPEGEISEPFKTVHGWHIVQVLDRRQADRTDTAMQNRAYGMLLNRKFN 406

Query: 299 KHEAEYVKKLRSNAIIH 315
           +    ++++LR+ A + 
Sbjct: 407 EEVQAWLQELRAGAYVE 423


>gi|242238056|ref|YP_002986237.1| peptidyl-prolyl cis-trans isomerase SurA [Dickeya dadantii Ech703]
 gi|242130113|gb|ACS84415.1| Peptidylprolyl isomerase [Dickeya dadantii Ech703]
          Length = 433

 Score =  122 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 30/308 (9%), Positives = 102/308 (33%), Gaps = 15/308 (4%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--------EL 72
           +++   +     + +  +  ++   ++  V+ + DI+  +  +K+              L
Sbjct: 7   LILGLALSANTVFAAPQVMDKVAAVVDNGVVLESDINSLMQSVKMNSQESGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G     + ++      A+   ++ +   S L  +GI  +
Sbjct: 67  RHQILERLIMDNIVLQMAQKMGAQVSDDQLDRAIANIAQQNHMTLDQLRSRLAAEGINYD 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI--RTVLFSIPDN 190
            ++  +       DV  ++   +   L  E+ A  Q++ +    + +   + +L    + 
Sbjct: 127 TYRSQIRKDMTIADVRNSEVRRRVTVLPQEVDALAQQIASQGSDKEVNLSQILLPLPENP 186

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNL 249
             +     +       +   +          +++    +  G+  +    +L   F + L
Sbjct: 187 SQEQVDKAESLANRLVKDARQGADFGKLAITYSADPQALKGGQMGWGRPQELPSLFAERL 246

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKRD----LGGEIALKAYLSAQNTPTKIEKHEAEYV 305
               +     P  +  G   + + D R     +        ++  + +    +      +
Sbjct: 247 ANPEKGQVIGPIRSGVGFHILRVNDTRGGNQAISVTETHARHILLKTSVVMNDAQARTKL 306

Query: 306 KKLRSNAI 313
           + +     
Sbjct: 307 EDVARQIK 314



 Score = 84.0 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/273 (11%), Positives = 76/273 (27%), Gaps = 17/273 (6%)

Query: 58  KRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
           + +  L  Q  +   +K     L    L   E         + ++    V+ AR      
Sbjct: 155 QEVDALAQQIASQGSDKEV--NLSQILLPLPENPSQEQVDKAESLANRLVKDARQGADFG 212

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------FMLKYGNLEMEIPAN 166
           +   ++             +   Q +     +                  G   + +   
Sbjct: 213 KLAITYSADPQALKGGQMGWGRPQELPSLFAERLANPEKGQVIGPIRSGVGFHILRVNDT 272

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
           +   + I+V E   R +L          Q    K    A + +        + +  +   
Sbjct: 273 RGGNQAISVTETHARHILLKTSVVMNDAQART-KLEDVARQIKSGSTSFAAQAKLLSQDP 331

Query: 227 -HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDL-GGEIA 283
                 G   +       P F++  ++  +   + P  +  G   I + D R +   + A
Sbjct: 332 GSANQGGDLGWASPDMYDPAFRDALMQLKKGEISAPVRSSFGWHLIQLLDTRQVDKTDAA 391

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            K          K  +    ++++ R++A +  
Sbjct: 392 QKERAYRMLFNRKFAEEAQTWMQEKRASAYVKI 424


>gi|209964864|ref|YP_002297779.1| peptidyl-prolyl cis-trans isomerase family protein, putative
           [Rhodospirillum centenum SW]
 gi|209958330|gb|ACI98966.1| peptidyl-prolyl cis-trans isomerase family protein, putative
           [Rhodospirillum centenum SW]
          Length = 433

 Score =  122 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 45/300 (15%), Positives = 97/300 (32%), Gaps = 13/300 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSS----RIRTTINGEVITDGDI 56
           M   +  SL   +        +++   V +    + A       R    +N EVI+  D+
Sbjct: 1   MIRTLRQSLVRHLPTAAALCGVLLCAGVLLAGRPAAAQGQGPVERAAALVNEEVISMSDL 60

Query: 57  SKRIALLKLQKINGELEK-------IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
             R+ +        +  +         ++ LI E L+ QE  +  I      ++      
Sbjct: 61  MNRLQMALSSSGLPDTPETRQRLLPQVLRLLIDEVLQIQEARRLEIRVTEQDIDRALENL 120

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
           A+   LS  +F   LD  G+     +Q L     W  +V+          + E+ A  ++
Sbjct: 121 AQQNRLSLGEFQRLLDASGVPVASLRQQLLASVAWSRLVQRRIRPTVSVSDDEVQAQLER 180

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
           +K    +   + + +F    +   N+  V +      E             +F+      
Sbjct: 181 IKANAGKPEYLVSEIFL-AVDDDANEAEVSRLADRLVEQIAGGANFGAVARQFSQSAGAF 239

Query: 230 SIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
           + G   +L +  L       +++      + P     G   + + D+R +         +
Sbjct: 240 TGGDLGWLQQGQLEQALDTAVQQLQPGQFSRPIRGVNGYHILWLRDQRAVAAGNPADIQV 299



 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 85/272 (31%), Gaps = 15/272 (5%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS--NTVNYFFVQ 108
           ++D ++  ++  +K             + L+ E     + + +        + +      
Sbjct: 169 VSDDEVQAQLERIKANAGKP-------EYLVSEIFLAVDDDANEAEVSRLADRLVEQIAG 221

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW---PDVVKNDFMLKYGNLEMEIPA 165
            A    ++ +   S     G      +Q    Q++      +    F      +      
Sbjct: 222 GANFGAVARQFSQSAGAFTGGDLGWLQQGQLEQALDTAVQQLQPGQFSRPIRGVNG--YH 279

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
                    V       +  ++    L       +   +A     +    C+ L   A +
Sbjct: 280 ILWLRDQRAVAAGNPADIQVAVGQLVLPADPANPEAGLEAARQIAQEAASCDALSAAAQR 339

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIAL 284
           I     G+A      DL  +  +++        T P++T +G+  + +CD+    G I  
Sbjct: 340 IPGAQQGQAPLTRLGDLPAEISSIVGALGVGTPTQPFLTDRGIMILMVCDRMVPEGSIPP 399

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
              +       +IE  +  Y++ LR +A I Y
Sbjct: 400 ADQVRDAIAGERIEMLQRRYLRDLRRDATIEY 431


>gi|161830191|ref|YP_001595995.1| putative peptidyl-prolyl cis-trans isomerase surA [Coxiella
           burnetii RSA 331]
 gi|161762058|gb|ABX77700.1| putative peptidyl-prolyl cis-trans isomerase surA [Coxiella
           burnetii RSA 331]
          Length = 321

 Score =  122 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 62/327 (18%), Positives = 113/327 (34%), Gaps = 19/327 (5%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI---- 56
           M  K+ TS+   +    T         +P  +        +I   +N E+IT  ++    
Sbjct: 1   MWKKILTSMVIILS--VTSISAFAQSTLPAPNATHEQSLDQIVAVVNDEIITQSELNHAL 58

Query: 57  ----SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
                + +            +K  + +LI + L+ Q  + + I   +N +N    + ++ 
Sbjct: 59  TAAKQQFMQRQISLPDQKTFKKQVLDQLIYQKLQLQVAKHNQIKVTNNEINAAVARISQA 118

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
             LS       L ++GI    F+  L  Q I   +            + +I A +++   
Sbjct: 119 NHLSQTALKQKLTQEGISYKEFRSQLQKQLIISKLQHQALQDTISINKSDIAAFQKQHAG 178

Query: 173 IT-VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
               +EY I T+L  +P +  Q Q    K        +L+         K          
Sbjct: 179 QIASKEYHIATILIPLPASATQAQINHAKGKAALILKQLQKGSSFETAMK-----MHPGS 233

Query: 232 GKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA 290
               +    +L   F + +LK   N  T P     G   I + DK            +  
Sbjct: 234 ADLGWRSAKELPQVFVKTVLKMKPNEVTGPIQAPNGFHIIKLLDKE--AKNTVSDQQIQR 291

Query: 291 QNTPTKIEKHEAEYVKKLRSNAIIHYY 317
                K+EK   +++ +LRS+A IH Y
Sbjct: 292 IVYQQKVEKALQKWLTQLRSSAYIHIY 318


>gi|238764654|ref|ZP_04625599.1| Chaperone surA [Yersinia kristensenii ATCC 33638]
 gi|238697146|gb|EEP89918.1| Chaperone surA [Yersinia kristensenii ATCC 33638]
          Length = 424

 Score =  122 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 37/292 (12%), Positives = 103/292 (35%), Gaps = 16/292 (5%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--------ELEKIA 76
             +    ++ +     ++   ++  V+   D+   +  +KL              L    
Sbjct: 1   MVVCANTAFAAPQEVDKVAAVVDNGVVLQSDVDGLLQSVKLNAQQAGQEVPDDATLRHQI 60

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           ++ LI++ ++ Q  +K GIT     ++      A    ++ +   S L   G+  + +++
Sbjct: 61  LERLIMDNIQLQMAKKMGITISDEALDKAIADIAAQNRMTPDQMRSRLAADGLNYDTYRE 120

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
            +  + +  +V  N+   +   L  E+ A  +++ N T  +  +      IP  +  +Q 
Sbjct: 121 QIRKEMLTSEVRNNEVRRRITILPQEVEALAKQVGNQTSGDTELNLSHILIPLPENPSQQ 180

Query: 197 FVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKK 252
            V +    A +    +    +        ++    +  G+  +    +L   F + L   
Sbjct: 181 QVDQAEDVANKLVSDIKGGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAERLQSA 240

Query: 253 SQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKH 300
           ++ +   P  +  G   + + D R     +        ++  + +P   +  
Sbjct: 241 NKGDVVGPIRSGVGFHILKVNDIRGGDNTVSVTEVHARHILLKPSPVMTDDQ 292



 Score = 83.6 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 53/168 (31%), Gaps = 4/168 (2%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                G   +++   +     ++V E   R +L         +Q   +     A+    +
Sbjct: 249 IRSGVGFHILKVNDIRGGDNTVSVTEVHARHILLKPSPVMTDDQARAKLAAAAADIKSGK 308

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEY 269
                   ++ +      +  G   +       P F++  +K  +   + P  +  G   
Sbjct: 309 -TDFATIAKEISQDPGSAMQGGDLGWASPDIYDPAFRDALMKLKKGEISTPVHSSFGWHL 367

Query: 270 IAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           I + D R +   + A K          K  +    ++++ R+ A +  
Sbjct: 368 IQVVDTRQVDKTDAAQKDRAYRMLFSRKFAEEAQTWMQEQRAAAYVKI 415


>gi|332703852|ref|ZP_08423940.1| SurA domain protein [Desulfovibrio africanus str. Walvis Bay]
 gi|332554001|gb|EGJ51045.1| SurA domain protein [Desulfovibrio africanus str. Walvis Bay]
          Length = 334

 Score =  122 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/312 (14%), Positives = 106/312 (33%), Gaps = 22/312 (7%)

Query: 19  YFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL------ 72
             ++    ++  +  ++  +  RI   +NG+VIT  D+ + +A   +Q    +L      
Sbjct: 29  VLLVTCALMLACLPARATEIVDRIVAVVNGQVITSYDLDRELAPYLMQLSGRKLNAQDEQ 88

Query: 73  -----EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
                 K  +  L+ + L   E ++  +  +   V     Q  ++  ++ ED    L ++
Sbjct: 89  QLTVVRKKLLDRLVDDILLLMEAKRLNLEVNDTEVENHIRQFRQSNSMTEEDLGRQLQRE 148

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
            +    +K+ +    +   V+      K    + EI     + K+   +   +   L  +
Sbjct: 149 NMTREEYKRNIRESMLRHRVLSFMVRRKVLVTDEEILRYYDEHKSDYTQAKEVELGLILL 208

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
           P N+  +           +              K++      S G    L  S+L  Q++
Sbjct: 209 PPNEDSD--------GLVQRLGKAEISFEEAARKYSKGPGAQSGGSIGRLKWSELASQWR 260

Query: 248 NL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEY 304
               +      + P+        + +             ++  +  +    K     AEY
Sbjct: 261 EALAQIHPGEISEPFSIDGNKAILKLKAIIPGKERSLDEVREEIRQKLYDPKYAVQYAEY 320

Query: 305 VKKLRSNAIIHY 316
           ++ L++ AI+  
Sbjct: 321 MQDLKTKAIVDI 332


>gi|53718302|ref|YP_107288.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei K96243]
 gi|52208716|emb|CAH34652.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei K96243]
          Length = 450

 Score =  122 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/336 (11%), Positives = 112/336 (33%), Gaps = 35/336 (10%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMS-----------SRIRTTINGEVITDGDISKRIA 61
           +K +  +  +    +  +++    A +             +   +N +VIT  ++ +R+ 
Sbjct: 3   MKKILRFAAVASGLVASLITVAPSASAQALRAQGASLADEVVAVVNNDVITGRELDQRVG 62

Query: 62  LLKLQKING--------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
           L+  +            +L    + ++++E ++ Q  +  GI  D+ TV     + A+  
Sbjct: 63  LIARRLQQQKAPVPPTDQLRAQVLNQMVLERIQVQRAKDDGIVVDNATVQATLGRLAQAN 122

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK-N 172
           G+  + + + ++ QG+  + F +    + +   + + +   K    + E+ +     +  
Sbjct: 123 GMQLDQYKARIEAQGVPWDLFVRDARTELMLSKLREKEVDSKITVSDAEVASYIASQRGP 182

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFV----QKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +  +R     +       Q  +    +K     +++           +  +     
Sbjct: 183 NAGSQQDLRLEHIFVKAPANAPQADIDVAQKKAEGLLQQALASGANFERLAKNQSEADDA 242

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP--YVTQKGVEYIAICDKR----DLGGEI 282
              G   +   + L     + + K +    NP       G E + + ++R          
Sbjct: 243 KKGGDLGFKSPASLPSDVVDAVSKLRPGEVNPTLIRVPDGFEIVRLVERRASQNPAASPK 302

Query: 283 ALKAYLSAQNT---PTKIEKHEAEYVKKLRSNAIIH 315
            ++ ++          K E    + +  +R    I 
Sbjct: 303 IVQTHVRHILLRVGEGKSESQARQQLIDIRRQ--IE 336



 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 16/156 (10%), Positives = 54/156 (34%), Gaps = 2/156 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +     +    + +          +   + +++   ++++ D                 +
Sbjct: 289 VERRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDIRRQIESGGDFEKFARTY 348

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           +        G   ++   +  P+F+  +        +NP  T+ G   I +  +RD  G 
Sbjct: 349 SQDGSASQGGDLGWISPGETVPEFERAMNTLQDGQVSNPVRTEYGYHLIQVLGRRDAEGS 408

Query: 282 IALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +  +  +        K E+  ++++++LR ++ +  
Sbjct: 409 VQQQMDIARQAIGQRKAEQAYSDWLRELRDSSYVQI 444


>gi|15964904|ref|NP_385257.1| hypothetical protein SMc00581 [Sinorhizobium meliloti 1021]
 gi|15074083|emb|CAC45730.1| Hypothetical protein SMc00581 [Sinorhizobium meliloti 1021]
          Length = 316

 Score =  122 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 88/307 (28%), Positives = 144/307 (46%), Gaps = 7/307 (2%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           I  L +   L     V   +  +   +S +   +N  VIT GD++KR+A LKLQ+ +G  
Sbjct: 9   IVRLLSAVALAGALSVAAGTVTTAMAASTVEVVVNSTVITSGDVAKRVAFLKLQRQSGGA 68

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            + A Q+L+ E LK+ EI +   +  ++ V+  F + A    LS E     LD+ G+G +
Sbjct: 69  AE-AKQQLVDEVLKRAEIARVQQSVSTDEVDAAFARFAAGNKLSPEQLGKILDQAGVGVD 127

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
           HFKQY+A+Q  WP VV   +         ++     +                     + 
Sbjct: 128 HFKQYIAVQMSWPRVVNFRYGSASRLSGGDLVKRMMQGGGNKPVTTEYFLQQVIFVIPES 187

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
           +      KR  +A  SR + P   +  + FA+   DVSI     +L   L   ++ L++K
Sbjct: 188 KRGAITAKRQAEANASRSQFPGC-DTSKAFAANYRDVSIRSLGRILAQQLPEDWKPLVEK 246

Query: 253 S-QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK----HEAEYVKK 307
           +    TT   VT+KGVEY+AIC KR +  + A +    A++   K  +    + A+Y+++
Sbjct: 247 AGDGMTTGTRVTEKGVEYLAICKKRQVNDDAAAEIVFRAEDLGKKKSEGEDPNSAKYLEE 306

Query: 308 LRSNAII 314
           LRS A I
Sbjct: 307 LRSKAQI 313


>gi|312883922|ref|ZP_07743639.1| survival protein SurA [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368380|gb|EFP95915.1| survival protein SurA [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 428

 Score =  122 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/313 (10%), Positives = 108/313 (34%), Gaps = 12/313 (3%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +KL     +  +   +     +      ++   +N  VI   DI   +  LK+       
Sbjct: 1   MKLWNYIILAFLSLNINHAVAQQEVALDQVAVIVNDGVILQSDIKTAMKTLKINAKKEGQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  LE+   ++LI++T+++Q+ ++ G+  D   +N    + A+N   +  +    L
Sbjct: 61  TLPSNSVLEEQVTEKLILDTIQQQQADRIGVKVDDGRLNEAIEEIAKNNQQTIAELKEEL 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            K+G+    F+  +  +    +        +   L  E+      +   +      +   
Sbjct: 121 QKEGLNYALFRDQVRKEISVSEARNAIVRRRINILPSEVDHLASLLSQESSATVQYKIGH 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             +      ++  ++++  D      +          F+     +  G   ++ + ++  
Sbjct: 181 IQLRVEDGDDKAQIKQQAMDIVSELEKGADFKTMAYTFSKGPKALKGGDWGWMRKEEMPT 240

Query: 245 QFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKH 300
            F +    +++ +   P+++  G   + I D +    +        ++  + +    ++ 
Sbjct: 241 IFADEIKMQNKGSIIGPFMSGSGFHILKIEDVKGLQTVAVTEVNARHILIKPSIILSDEG 300

Query: 301 EAEYVKKLRSNAI 313
             + + ++     
Sbjct: 301 VKKELIEITKRIK 313



 Score = 75.9 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/269 (11%), Positives = 78/269 (28%), Gaps = 4/269 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++    +LL  +       KI   +L VE    +   K       + +        
Sbjct: 154 ILPSEVDHLASLLSQESSATVQYKIGHIQLRVEDGDDKAQIKQQAMDIVSELEKGADFKT 213

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                S    +      G         +    I      +            I   +   
Sbjct: 214 MAYTFSKGPKALKGGDWGWMRKEEMPTIFADEIKMQNKGSIIGPFMSGSGFHILKIEDVK 273

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK-LEKFASKI-HD 228
              TV    +      I  + + +   V+K + +  +         ++  ++++      
Sbjct: 274 GLQTVAVTEVNARHILIKPSIILSDEGVKKELIEITKRIKSGEVTFSQMAKQYSQDTGSG 333

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKA 286
              G+  +       P+F++ L        + P+ T  G   + +  ++ +   + +LK 
Sbjct: 334 TQGGELGFHTSDIYVPEFKHQLDTLPIGQISAPFKTVHGWHIVEVTGRKQVDRTDASLKN 393

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                    K  +    +++++R+ A + 
Sbjct: 394 KAYRIIFNRKFNEEAGAWLQEIRAGAFVE 422


>gi|152995084|ref|YP_001339919.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas sp.
           MWYL1]
 gi|150836008|gb|ABR69984.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas sp.
           MWYL1]
          Length = 416

 Score =  122 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/305 (14%), Positives = 104/305 (34%), Gaps = 11/305 (3%)

Query: 15  LLTTYFVLIIFCIVPIVSY-KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI----N 69
            L ++F LIIF +  + +   +      I   ++ + I + DI  R  ++K +       
Sbjct: 2   KLFSFFSLIIFALASVQTLHAAPTKIDGISAIVDSKPILESDIMSRFQIVKDRVPGGVMT 61

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
             + +    ++I E L+     K G+   S+ V+   +  A+N  L  +   + L  +GI
Sbjct: 62  DNIHRQIQNQMIDEALQVNYARKVGMRASSSEVDNAILGVAKNMNLDLQGLKNVLADKGI 121

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
               +++ +  + +  ++ +     +    E EI        +IT  +  +      I  
Sbjct: 122 NYERYREQIEQEILINNIKREIVKKRIAISEQEIDDYLSSDTSITKEKDQVHLRHIII-- 179

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
            +  N      +IK              +  + +     +  G   +   + L P F   
Sbjct: 180 -RASNPEEAAAKIKTIAGKIHSENDFVQQAIENSDGQFAIEGGDLGWRPLNQLPPLFVRA 238

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKRDLGG---EIALKAYLSAQNTPTKIEKHEAEYVK 306
           L+  +     P  +  G   + + +KR       +     ++  +    +  +       
Sbjct: 239 LESEKGPLIGPLQSNAGFHLLWVIEKRSPDVTLQQQTKTRHILVRANEIRNMEQTKVLAD 298

Query: 307 KLRSN 311
           +L   
Sbjct: 299 ELYKK 303



 Score = 86.7 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 54/141 (38%), Gaps = 3/141 (2%)

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYL 237
             +T    +  N+++N    +    +  +            ++++      +  G   ++
Sbjct: 274 QTKTRHILVRANEIRNMEQTKVLADELYKKLENGADFAQLAKEYSEDQGSTLQGGDLGWV 333

Query: 238 LESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLG-GEIALKAYLSAQNTPT 295
               + P+F+  + K +  + + P+ TQ G   + +  +R+    +   ++      T  
Sbjct: 334 TLGAMVPEFEEVMKKTNIGDISKPFRTQFGWHILQVEGRREADISDKVKRSNAERALTAQ 393

Query: 296 KIEKHEAEYVKKLRSNAIIHY 316
           K +     ++ +LR++A I  
Sbjct: 394 KQDIVLGNWLDELRADAFIDI 414


>gi|207742369|ref|YP_002258761.1| peptidyl-prolyl cis-trans isomerase (rotamase c) protein [Ralstonia
           solanacearum IPO1609]
 gi|206593759|emb|CAQ60686.1| peptidyl-prolyl cis-trans isomerase (rotamase c) protein [Ralstonia
           solanacearum IPO1609]
          Length = 473

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 95/303 (31%), Gaps = 20/303 (6%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKRI----ALLKLQKINGELEK----IAVQEL 80
                    +   +   +N ++IT  ++  R       L+ Q              +++L
Sbjct: 55  TASGAARSQLVDEVVAVVNTDIITRRELLDRADLVERTLQAQNRPMPARADLLGEVLEQL 114

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I+E ++ Q  ++SGI      V+      A+   LS     S L + G+  + +++ L  
Sbjct: 115 ILERVQAQTAKESGIRVSDADVDRAVESVAQRNNLSVPQLKSKLAQSGLAYDKYREDLRQ 174

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKM---KNITVREYLIRTVLFSIPDNKLQNQGF 197
           + +   +   +   K    + EI     +         +EY +  +L  + ++    Q  
Sbjct: 175 EILLARLRDREVDSKVQVFDGEIDNFLAQQGGGATGEAQEYNVAQILVPVAEDASAEQKA 234

Query: 198 VQKRIKDA-EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQN 255
             +   ++  +               +S       G+        L  QF N +      
Sbjct: 235 AARGKAESLLKQAQGGADFAKLARDSSSGPEAAQGGELGLRSIGRLPTQFANAVVDLKPG 294

Query: 256 NTTN-PYVTQKGVEYIAICDKRDLGGEIALK------AYLSAQNTPTKIEKHEAEYVKKL 308
                   +  G   + + DKR  G   + K       ++  +  PT         +  L
Sbjct: 295 QLAGQVIESPAGFHVLKLVDKRAPGTAASAKVAQTQVRHILIKTGPTMSADDARRQLAGL 354

Query: 309 RSN 311
           R  
Sbjct: 355 RDR 357



 Score =  112 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 19/178 (10%), Positives = 61/178 (34%), Gaps = 2/178 (1%)

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
                 +         G   +++   +      + +    +     I      +    ++
Sbjct: 290 DLKPGQLAGQVIESPAGFHVLKLVDKRAPGTAASAKVAQTQVRHILIKTGPTMSADDARR 349

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN 259
           ++    +  +      +   +++      + G+  ++    L P+F+  +        + 
Sbjct: 350 QLAGLRDRIVHGYDFSDAARRYSQDTSASAGGELGWVSPGQLVPEFEQAMNLLKPGEVSQ 409

Query: 260 PYVTQKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           P  +Q GV  I +  +RD    +   + Y  +     K++    +++++LR +A + Y
Sbjct: 410 PVQSQFGVHLIQVEGRRDAEVPVDRQRDYARSVIREQKVQAAYEDWLRQLRDSAHVEY 467


>gi|83749338|ref|ZP_00946335.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum UW551]
 gi|83724016|gb|EAP71197.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum UW551]
          Length = 495

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 95/303 (31%), Gaps = 20/303 (6%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKRI----ALLKLQKINGELEK----IAVQEL 80
                    +   +   +N ++IT  ++  R       L+ Q              +++L
Sbjct: 77  TASGAARSQLVDEVVAVVNTDIITRRELLDRADLVERTLQAQNRPMPARADLLGEVLEQL 136

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I+E ++ Q  ++SGI      V+      A+   LS     S L + G+  + +++ L  
Sbjct: 137 ILERVQAQTAKESGIRVSDADVDRAVESVAQRNNLSVPQLKSKLAQSGLAYDKYREDLRQ 196

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKM---KNITVREYLIRTVLFSIPDNKLQNQGF 197
           + +   +   +   K    + EI     +         +EY +  +L  + ++    Q  
Sbjct: 197 EILLARLRDREVDSKVQVFDGEIDNFLAQQGGGATGEAQEYNVAQILVPVAEDASAEQKA 256

Query: 198 VQKRIKDA-EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQN 255
             +   ++  +               +S       G+        L  QF N +      
Sbjct: 257 AARGKAESLLKQAQGGADFAKLARDSSSGPEAAQGGELGLRSIGRLPTQFANAVVDLKPG 316

Query: 256 NTTN-PYVTQKGVEYIAICDKRDLGGEIALK------AYLSAQNTPTKIEKHEAEYVKKL 308
                   +  G   + + DKR  G   + K       ++  +  PT         +  L
Sbjct: 317 QLAGQVIESPAGFHVLKLVDKRAPGTAASAKVAQTQVRHILIKTGPTMSADDARRQLAGL 376

Query: 309 RSN 311
           R  
Sbjct: 377 RDR 379



 Score =  112 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 19/178 (10%), Positives = 61/178 (34%), Gaps = 2/178 (1%)

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
                 +         G   +++   +      + +    +     I      +    ++
Sbjct: 312 DLKPGQLAGQVIESPAGFHVLKLVDKRAPGTAASAKVAQTQVRHILIKTGPTMSADDARR 371

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN 259
           ++    +  +      +   +++      + G+  ++    L P+F+  +        + 
Sbjct: 372 QLAGLRDRIVHGYDFSDAARRYSQDTSASAGGELGWVSPGQLVPEFEQAMNLLKPGEVSQ 431

Query: 260 PYVTQKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           P  +Q GV  I +  +RD    +   + Y  +     K++    +++++LR +A + Y
Sbjct: 432 PVQSQFGVHLIQVEGRRDAEVPVDRQRDYARSVIREQKVQAAYEDWLRQLRDSAHVEY 489


>gi|207727966|ref|YP_002256360.1| peptidyl-prolyl cis-trans isomerase (rotamase c) protein [Ralstonia
           solanacearum MolK2]
 gi|206591209|emb|CAQ56821.1| peptidyl-prolyl cis-trans isomerase (rotamase c) protein [Ralstonia
           solanacearum MolK2]
          Length = 473

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 96/303 (31%), Gaps = 20/303 (6%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKRI----ALLKLQKINGELEK----IAVQEL 80
                    +   +   +N ++IT  ++  R       L+ Q              +++L
Sbjct: 55  TASGAARSQLVDEVVAVVNTDIITRRELLDRADLVERTLQAQNRPMPARADLLGEVLEQL 114

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I+E ++ Q  ++SGI      V+      A+   LS     S L + G+  + +++ L  
Sbjct: 115 ILERVQAQTAKESGIRVSDADVDRAVESVAQRNNLSVPQLKSKLAQSGLAYDKYREDLRQ 174

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKM---KNITVREYLIRTVLFSIPDNKLQNQGF 197
           + +   +   +   K    + EI     +         +EY +  +L  + ++    Q  
Sbjct: 175 EILLARLRDREVDSKVQVFDGEIDNFLAQQGGGATGEAQEYNVAQILVPVAEDASAEQKA 234

Query: 198 VQK-RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQN 255
             + + ++  +               +S       G+        L  QF N +      
Sbjct: 235 AARGKAENLLKQAQGGADFAKLARDNSSGPEAAQGGELGLRSIGRLPTQFANAVVDLKPG 294

Query: 256 NTTN-PYVTQKGVEYIAICDKRDLGGEIALK------AYLSAQNTPTKIEKHEAEYVKKL 308
                   +  G   + + DKR  G   + K       ++  +  PT         +  L
Sbjct: 295 QLAGQVIESPAGFHVLKLVDKRAPGTAASAKVAQTQVRHILIKTGPTMSADDARRQLAGL 354

Query: 309 RSN 311
           R  
Sbjct: 355 RDR 357



 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/272 (11%), Positives = 80/272 (29%), Gaps = 10/272 (3%)

Query: 55  DISKRIALLKLQKINGELEKIAVQELI------VETLKKQEIEKSGITFDSNTVNYFFVQ 108
           +I   +A           E    Q L+          K     K+            F +
Sbjct: 196 EIDNFLAQQGGGATGEAQEYNVAQILVPVAEDASAEQKAAARGKAENLLKQAQGGADFAK 255

Query: 109 HARNTGLSAEDFS--SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
            AR+     E         +             +      +         G   +++   
Sbjct: 256 LARDNSSGPEAAQGGELGLRSIGRLPTQFANAVVDLKPGQLAGQVIESPAGFHVLKLVDK 315

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
           +      + +    +     I      +    ++++    +  +      +   +++   
Sbjct: 316 RAPGTAASAKVAQTQVRHILIKTGPTMSADDARRQLAGLRDRIVHGYDFSDAARRYSQDT 375

Query: 227 HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL- 284
              + G+  ++    L P+F+  +        + P  +Q GV  I +  +RD    +   
Sbjct: 376 SASAGGELGWVSPGQLVPEFEQAMNLLKPGEVSQPVQSQFGVHLIQVEGRRDAEVPVDRQ 435

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           + Y  +     K++    +++++LR +A + Y
Sbjct: 436 RDYARSVIREQKVQAAYEDWLRQLRDSAHVEY 467


>gi|327188010|gb|EGE55240.1| putative peptidyl-prolyl cis-trans isomerase protein [Rhizobium
           etli CNPAF512]
          Length = 314

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 76/287 (26%), Positives = 138/287 (48%), Gaps = 10/287 (3%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            +S ++  +NG  IT GD++KR A L+LQ    +  K A ++LI ETLK+QE+ +  ++ 
Sbjct: 29  AASEVQAVVNGTAITSGDVAKRQAFLRLQHTAADA-KTAKEQLIDETLKRQEVARVHMSV 87

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
               V+  F + +    LS    S  LD+ G+G +HFK ++A+Q  WP VV   +     
Sbjct: 88  SQQDVDASFARFSAGNKLSVAQMSQILDRAGVGVDHFKGFIAVQMSWPRVVNARYGSTTR 147

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
               ++ +   +                     + +      KR  +AE SR + P   +
Sbjct: 148 LSNYDLVSRMMQNNKQKPVTTEYMLQQIIFVIPEAKRGAITGKRKGEAEASRSKFPGC-D 206

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
           + + FA+ + DV++     +L  ++ P ++ L+++++ NTT   VT KGVEY+AIC +R 
Sbjct: 207 QAKVFAATMRDVAVRDLGRMLAPEIPPDWKPLVEQAKGNTTGTRVTDKGVEYLAICSQRQ 266

Query: 278 LGGEIALKAYLSAQNTPTKI--------EKHEAEYVKKLRSNAIIHY 316
           +  + A +     ++              ++  +Y+ +LR  A I Y
Sbjct: 267 VSDDQAAEMVFRQEDLDKSKAGKNGPPENENSKKYLDELRKKAQIAY 313


>gi|221200089|ref|ZP_03573132.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Burkholderia multivorans CGD2M]
 gi|221206758|ref|ZP_03579770.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Burkholderia multivorans CGD2]
 gi|221173413|gb|EEE05848.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Burkholderia multivorans CGD2]
 gi|221180328|gb|EEE12732.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Burkholderia multivorans CGD2M]
          Length = 453

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 101/306 (33%), Gaps = 24/306 (7%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------LEKIAVQELIVE 83
             +   ++  +   +N +VIT  ++ +R+ L+  +             L    + ++++E
Sbjct: 34  GSQGAQLADEVVAVVNNDVITGRELDQRVGLISRRLQQQNAPVPPIDQLRAQVLNQMVLE 93

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            ++ Q+ +  GI  D  TV     + A+  G++ + + S L+ QG+  + F      + +
Sbjct: 94  RIQVQKAKDDGIRVDDATVQATLQRLAQANGMTLDQYRSRLEAQGVPWSIFTADARTELM 153

Query: 144 WPDVVKNDFMLKYGNLEMEIPAN----KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
              + + +   K    + E+ +     +    +           + +  +         Q
Sbjct: 154 LSKLREREVDSKITVSDAEVASYIASQRGPNASQQQDLRFQHIFIKAPTNAPQTQIEAAQ 213

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN 259
           K+ +   +            +  +        G   +   S L     +   K +    N
Sbjct: 214 KKAEALLQQATSGADFEKLAKNNSEADDAKKGGDLGFKSPSALPADVVDAAAKLRPGQVN 273

Query: 260 P--YVTQKGVEYIAICDKRDLGGEIALK--------AYLSAQNTPTKIEKHEAEYVKKLR 309
           P       G E I + D+R   G  A           ++  +    K E    + +  +R
Sbjct: 274 PTLIRVPDGFEIIRLVDRRQSQGATAAAPKIVQTHVRHILLRVGEGKSEGQARQQLIDIR 333

Query: 310 SNAIIH 315
               I 
Sbjct: 334 RQ--IE 337



 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/285 (10%), Positives = 86/285 (30%), Gaps = 18/285 (6%)

Query: 48  GEVITDGDISKRIALLKLQKINGELEKIAVQELIV--------ETLKKQEIEKSGITFDS 99
              IT  D      +   +  N   ++    + I         +T  +   +K+      
Sbjct: 163 DSKITVSDAEVASYIASQRGPNASQQQDLRFQHIFIKAPTNAPQTQIEAAQKKAEALLQQ 222

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD------NHFKQYLAIQSIWPDVVKNDFM 153
            T    F + A+N   + +                         L    + P +++    
Sbjct: 223 ATSGADFEKLAKNNSEADDAKKGGDLGFKSPSALPADVVDAAAKLRPGQVNPTLIR--VP 280

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
             +  + +      Q       +          +   + +++G  ++++ D         
Sbjct: 281 DGFEIIRLVDRRQSQGATAAAPKIVQTHVRHILLRVGEGKSEGQARQQLIDIRRQIEAGG 340

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAI 272
                   ++        G   ++   +  P+F+  +        + P  T+ G   I +
Sbjct: 341 DFEKFARTYSQDGSASQGGDLGWISPGETVPEFERAMNALQDGQISQPVRTEYGYHLIQV 400

Query: 273 CDKRDLGGEIALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             +R+  G +  +  +        K E+  A+++++LR ++ + Y
Sbjct: 401 VGRREAEGSVQQQMDIARQAIGQRKAEQAYADWLRELRDSSYVQY 445


>gi|261408078|ref|YP_003244319.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           Y412MC10]
 gi|261284541|gb|ACX66512.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           Y412MC10]
          Length = 390

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 97/303 (32%), Gaps = 25/303 (8%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           ++ +  +     +V IV   +    +     +N   IT  ++   +  +          K
Sbjct: 87  MIASLVLAAALIVVLIVPPFAKGSGNEAIAKVNDVNITKDNLYDELVSVGG--------K 138

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             +  +I E L +QE++   IT     VN        +   S E F+  L + G+  ++ 
Sbjct: 139 QTLNSMITEELIQQELKNKSITVTDADVNKEVDALKASF-PSEEQFNMALQQNGMTLDNL 197

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
           K+    Q     ++      K    + E+     + K        +R     +   +   
Sbjct: 198 KEQTKTQVELKKLM----ADKIKVTDEEVKEVYDQNKESFATPEQVRASHILVETKEEAE 253

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-S 253
                       +            ++        + G   +    ++ P F+    K  
Sbjct: 254 AI---------VKQLKEGADFATIAKEKNQDATKDTGGDLNFFGRGEMDPAFEEAAFKLK 304

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           ++  + P  +  G   I + D+++         K  + +Q    K+      Y+++L+  
Sbjct: 305 KDEISEPVKSSFGYHIIKVTDRKEATNPTLEDKKEEIRSQLENQKVYAESTAYIQELKDK 364

Query: 312 AII 314
           A I
Sbjct: 365 ATI 367


>gi|332305313|ref|YP_004433164.1| SurA domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172642|gb|AEE21896.1| SurA domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 431

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 102/312 (32%), Gaps = 15/312 (4%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--- 71
           +  T     +   +   ++        +   ++  V+ +  I + ++ +K   I      
Sbjct: 1   MKLTVVTFALLAFISFSTFAKQTRLDNVAVIVDQGVVLESQIKELVSTVKRNAITNNQTL 60

Query: 72  -----LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
                L   A++ LIV++L+ Q  ++ GI      ++      AR  G + E     L  
Sbjct: 61  PSDRVLRTQAIERLIVDSLQSQMADRMGIQISDPQLDQTIDNIAREDGTTVEQLRQSLAS 120

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
           +G+    +++ +  + I  +V + +   +      EI    + +     ++         
Sbjct: 121 EGVSFEVYREQVRKELISGEVRRANVRRRIYITPQEISNLVKLIDEQGGQQAEYHLGHIL 180

Query: 187 IPDNKLQNQGFVQKRIK---DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
           I          V K         E      +        +S    +  G   ++  + + 
Sbjct: 181 IGFPPEPTDADVSKAKDTAEKVLELLNNGSEFAKIATASSSGSKALEGGDLGWMNINSMP 240

Query: 244 PQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK---AYLSAQNTPTKIEK 299
             F + +   S+++   P  +  G   + I D R +      +    ++  + +    ++
Sbjct: 241 TLFAEAVQGTSKDDLIGPIRSGAGFHVLKIIDIRGIEKVEVAELKSRHILIKPSVILSDE 300

Query: 300 HEAEYVKKLRSN 311
              + + + R  
Sbjct: 301 KAEKMLIEFRKQ 312



 Score = 80.9 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 40/138 (28%), Gaps = 4/138 (2%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
           R +L          +          ++            ++ ++     +  G   +   
Sbjct: 287 RHILIKPSVILSDEKAEKMLIEF-RKQLLAGEADFAELAKEHSADPGSALRGGDLGWADP 345

Query: 240 SDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK-AYLSAQNTPTKI 297
           +   P F++   K      + P  +  G   + + DKR        K           K 
Sbjct: 346 NVYVPAFRDTLQKLEVGEISQPVRSTHGWHLMQLMDKRVQDATEKRKEDKAYQLLFQRKF 405

Query: 298 EKHEAEYVKKLRSNAIIH 315
            +    ++K++R +A + 
Sbjct: 406 AEETEAWLKEMRDSAYVE 423


>gi|161523769|ref|YP_001578781.1| SurA domain-containing protein [Burkholderia multivorans ATCC
           17616]
 gi|189351470|ref|YP_001947098.1| peptidyl-prolyl cis-trans isomerase [Burkholderia multivorans ATCC
           17616]
 gi|160341198|gb|ABX14284.1| SurA domain [Burkholderia multivorans ATCC 17616]
 gi|189335492|dbj|BAG44562.1| peptidyl-prolyl cis-trans isomerase [Burkholderia multivorans ATCC
           17616]
          Length = 451

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 101/306 (33%), Gaps = 24/306 (7%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------LEKIAVQELIVE 83
             +   ++  +   +N +VIT  ++ +R+ L+  +             L    + ++++E
Sbjct: 32  GSQGAQLADEVVAVVNNDVITGRELDQRVGLISRRLQQQNAPVPPIDQLRAQVLNQMVLE 91

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            ++ Q+ +  GI  D  TV     + A+  G++ + + S L+ QG+  + F      + +
Sbjct: 92  RIQVQKAKDDGIRVDDATVQATLQRLAQANGMTLDQYRSRLEAQGVPWSIFTADARTELM 151

Query: 144 WPDVVKNDFMLKYGNLEMEIPAN----KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
              + + +   K    + E+ +     +    +           + +  +         Q
Sbjct: 152 LSKLREREVDSKITVSDAEVASYIASQRGPNASQQQDLRFQHIFIKAPTNAPQTQIEAAQ 211

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN 259
           K+ +   +            +  +        G   +   S L     +   K +    N
Sbjct: 212 KKAEALLQQATSGADFEKLAKNNSEADDAKKGGDLGFKSPSALPADVVDAAAKLRPGQVN 271

Query: 260 P--YVTQKGVEYIAICDKRDLGGEIALK--------AYLSAQNTPTKIEKHEAEYVKKLR 309
           P       G E I + D+R   G  A           ++  +    K E    + +  +R
Sbjct: 272 PTLIRVPDGFEIIRLVDRRQSQGATAAAPKIVQTHVRHILLRVGEGKSEGQARQQLIDIR 331

Query: 310 SNAIIH 315
               I 
Sbjct: 332 RQ--IE 335



 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/285 (10%), Positives = 86/285 (30%), Gaps = 18/285 (6%)

Query: 48  GEVITDGDISKRIALLKLQKINGELEKIAVQELIV--------ETLKKQEIEKSGITFDS 99
              IT  D      +   +  N   ++    + I         +T  +   +K+      
Sbjct: 161 DSKITVSDAEVASYIASQRGPNASQQQDLRFQHIFIKAPTNAPQTQIEAAQKKAEALLQQ 220

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD------NHFKQYLAIQSIWPDVVKNDFM 153
            T    F + A+N   + +                         L    + P +++    
Sbjct: 221 ATSGADFEKLAKNNSEADDAKKGGDLGFKSPSALPADVVDAAAKLRPGQVNPTLIR--VP 278

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
             +  + +      Q       +          +   + +++G  ++++ D         
Sbjct: 279 DGFEIIRLVDRRQSQGATAAAPKIVQTHVRHILLRVGEGKSEGQARQQLIDIRRQIEAGG 338

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAI 272
                   ++        G   ++   +  P+F+  +        + P  T+ G   I +
Sbjct: 339 DFEKFARTYSQDGSASQGGDLGWISPGETVPEFERAMNALQDGQISQPIRTEYGYHLIQV 398

Query: 273 CDKRDLGGEIALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             +R+  G +  +  +        K E+  A+++++LR ++ + Y
Sbjct: 399 VGRREAEGSVQQQMDIARQAIGQRKAEQAYADWLRELRDSSYVQY 443


>gi|212213438|ref|YP_002304374.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuG_Q212]
 gi|212011848|gb|ACJ19229.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuG_Q212]
          Length = 321

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/327 (18%), Positives = 112/327 (34%), Gaps = 19/327 (5%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI---- 56
           M  K+ TS+   +    T         +P  +        +I   +N E+IT  ++    
Sbjct: 1   MWKKILTSMVVILS--VTSISAFAQSTLPAPNATHEQSLDQIVAVVNDEIITQSELNHAL 58

Query: 57  ----SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
                + +            +K  + +LI + L+ Q  + + I   +N +N    + ++ 
Sbjct: 59  TAAKQQFMQRQISLPDQKTFKKKVLDQLIYQKLQLQVAKHNQIKVTNNEINAAVARISQA 118

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
             LS       L ++GI    F+  L  Q I   +            + +I A +++   
Sbjct: 119 NHLSQTALKQKLTQEGISYKEFRSQLQKQLIISKLQHQALQDTISINKSDIAAFQKQHAG 178

Query: 173 IT-VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
                EY I T+L  +P +  Q Q    K        +L+         K          
Sbjct: 179 QIASTEYHIATILIPLPASATQAQINHAKGKAALVLKQLQKGSSFETAMK-----MHPGS 233

Query: 232 GKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA 290
               +    +L   F + +LK   N  T P     G   I + DK            +  
Sbjct: 234 ADLGWRSAKELPQVFVKTVLKMKPNEVTGPIQAPNGFHIIKLLDKE--AKNTVSDQQIQR 291

Query: 291 QNTPTKIEKHEAEYVKKLRSNAIIHYY 317
                K+EK   +++ +LRS+A IH Y
Sbjct: 292 IVYQQKVEKALQKWLTQLRSSAYIHIY 318


>gi|121611714|ref|YP_999521.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter
           eiseniae EF01-2]
 gi|121556354|gb|ABM60503.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter
           eiseniae EF01-2]
          Length = 482

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 92/297 (30%), Gaps = 19/297 (6%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------LEKIAVQELIVETL 85
            +   +  I   +N E +T+ ++  R+   + Q             L    ++ LI+E +
Sbjct: 69  SATGWADFIVAVVNSEPVTNNEVRSRLVRAEAQIARQGASMPSREWLAHEVLERLILERV 128

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
           + Q+  +SGI  D   +       AR  G++ E F + L++ GIG   F+  L  Q +  
Sbjct: 129 QLQQARESGIRVDDFALAQAEQGVARQNGMTLEQFYARLERDGIGKERFRAELRDQLLEQ 188

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI-----RTVLFSIPDNKLQNQGFVQK 200
            + + +   +    E +I            +   +       ++    D         + 
Sbjct: 189 RLREREVDARVQVSEQDIDQYLHAEPPAGAQAKPMEINLGHVLVLVPEDATPAQVAERRA 248

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVS-IGKAQYLLESDLHPQF-QNLLKKSQNNTT 258
           R + A E             +F+         G             F  +       +  
Sbjct: 249 RAQQAAERLRSGADFATVAREFSDAPEGQRAGGMLGLRPVDRYPELFVSSTRGLPVGSLV 308

Query: 259 NPYVTQKGVEYIAICDK----RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            P  +  G   + +  +    +      +   ++  +  P   E   AE +   R  
Sbjct: 309 GPVRSPAGFHLLKVEQRVIAGQPATVLQSHARHILLRTGPRMSETAAAERLADYRRR 365



 Score = 95.9 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 16/140 (11%), Positives = 41/140 (29%), Gaps = 3/140 (2%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLL 238
               +      ++      ++                    + +         G   +  
Sbjct: 338 HARHILLRTGPRMSETAAAERLADYRRRVLAGQADFAALAREHSQDDGSAKKGGDLGWAN 397

Query: 239 ESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEI-ALKAYLSAQNTPTK 296
                P+F+  L+     + + P VT+ GV  I + ++R         +          K
Sbjct: 398 PGQYVPEFEQALQALQPGDISAPLVTRFGVHLIELLERRQASLTAREQRDMARQAVREKK 457

Query: 297 IEKHEAEYVKKLRSNAIIHY 316
           +++    + + LR+ A + Y
Sbjct: 458 LDQAYISWTQDLRARAYVEY 477


>gi|299067923|emb|CBJ39137.1| peptidyl-prolyl cis-trans isomerase (PPIase), involved in
           maturation of outer membrane proteins [Ralstonia
           solanacearum CMR15]
          Length = 496

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 96/304 (31%), Gaps = 21/304 (6%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKRI----ALLKLQKIN----GELEKIAVQEL 80
              S     +   +   +N ++IT  ++  R       L+ Q        +L    +++L
Sbjct: 77  TASSAARSQLVDEVVAVVNTDIITRRELLDRADLVERTLQSQNRQIPARPDLLGEVLEQL 136

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I+E ++ Q  ++SGI      V+      A+   LS     S L + G+  + +++ L  
Sbjct: 137 ILERVQAQTAKESGIRVSDADVDRAVESVAQRNNLSVSQLKSKLAQSGLAYDKYREDLRQ 196

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR----EYLIRTVLFSIPDNKLQNQG 196
           + +   +   +   K    + EI     +           EY +  +L  + ++    Q 
Sbjct: 197 EILLARLRDREVDSKVQVFDGEIDNFLAQQGGSAASGGALEYNVAQILVPVAEDASAEQK 256

Query: 197 FVQKRIKDA-EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
              +   ++  +               +        G+        L  QF N +     
Sbjct: 257 AAARGKAESLLKQVQGGADFAKLARDSSGAPEAAQGGELGLRPIGRLPAQFANAVVDLKP 316

Query: 255 NNTT-NPYVTQKGVEYIAICDKRDLGGEIALK------AYLSAQNTPTKIEKHEAEYVKK 307
                    +  G   + + DKR  G  +  K       ++  +  PT         +  
Sbjct: 317 GQVVDQVIESPAGFHVLKLVDKRAQGTAVTAKVAQTQVRHILIKTGPTMSADDARRQLAG 376

Query: 308 LRSN 311
           LR  
Sbjct: 377 LRDR 380



 Score =  113 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 20/178 (11%), Positives = 64/178 (35%), Gaps = 2/178 (1%)

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
                 VV        G   +++   + +   +T +    +     I      +    ++
Sbjct: 313 DLKPGQVVDQVIESPAGFHVLKLVDKRAQGTAVTAKVAQTQVRHILIKTGPTMSADDARR 372

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN 259
           ++    +  +      +   +++      + G+  ++    L P+F+  +        + 
Sbjct: 373 QLAGLRDRIVHGYDFGDAARRYSQDNSASAGGELGWVSPGQLVPEFEQAMGLLKPGEVSQ 432

Query: 260 PYVTQKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           P  +Q G+  I +  +R+    +   + Y  +     K++    +++++LR +A + Y
Sbjct: 433 PVQSQFGLHLIQVEGRREAEVPVDRQRDYARSVIREQKVQAAYEDWLRQLRDSAHVEY 490


>gi|221211271|ref|ZP_03584250.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Burkholderia multivorans CGD1]
 gi|221168632|gb|EEE01100.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Burkholderia multivorans CGD1]
          Length = 453

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 101/306 (33%), Gaps = 24/306 (7%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------LEKIAVQELIVE 83
             +   ++  +   +N +VIT  ++ +R+ L+  +             L    + ++++E
Sbjct: 34  GSQGAQLADEVVAVVNNDVITGRELDQRVGLISRRLQQQNAPVPPIDQLRAQVLNQMVLE 93

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            ++ Q+ +  GI  D  TV     + A+  G++ + + S L+ QG+  + F      + +
Sbjct: 94  RIQVQKAKDDGIRVDDATVQATLQRLAQANGMTLDQYRSRLEAQGVPWSIFTADARTELM 153

Query: 144 WPDVVKNDFMLKYGNLEMEIPAN----KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
              + + +   K    + E+ +     +    +           + +  +         Q
Sbjct: 154 LSKLREREVDSKITVSDAEVASYIASQRGPNASQQQDLRFQHIFIKAPTNAPQTQIEAAQ 213

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN 259
           K+ +   +            +  +        G   +   S L     +   K +    N
Sbjct: 214 KKAEALLQQATSGADFEKLAKNNSEADDAKKGGDLGFKSPSALPADVVDAAAKLRPGQVN 273

Query: 260 P--YVTQKGVEYIAICDKRDLGGEIALK--------AYLSAQNTPTKIEKHEAEYVKKLR 309
           P       G E I + D+R   G  A           ++  +    K E    + +  +R
Sbjct: 274 PTLIRVPDGFEIIRLVDRRQSQGATAAAPKIVQTHVRHILLRVGEGKSEGQARQQLIDIR 333

Query: 310 SNAIIH 315
               I 
Sbjct: 334 RQ--IE 337



 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/285 (10%), Positives = 86/285 (30%), Gaps = 18/285 (6%)

Query: 48  GEVITDGDISKRIALLKLQKINGELEKIAVQELIV--------ETLKKQEIEKSGITFDS 99
              IT  D      +   +  N   ++    + I         +T  +   +K+      
Sbjct: 163 DSKITVSDAEVASYIASQRGPNASQQQDLRFQHIFIKAPTNAPQTQIEAAQKKAEALLQQ 222

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD------NHFKQYLAIQSIWPDVVKNDFM 153
            T    F + A+N   + +                         L    + P +++    
Sbjct: 223 ATSGADFEKLAKNNSEADDAKKGGDLGFKSPSALPADVVDAAAKLRPGQVNPTLIR--VP 280

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
             +  + +      Q       +          +   + +++G  ++++ D         
Sbjct: 281 DGFEIIRLVDRRQSQGATAAAPKIVQTHVRHILLRVGEGKSEGQARQQLIDIRRQIEAGG 340

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAI 272
                   ++        G   ++   +  P+F+  +        + P  T+ G   I +
Sbjct: 341 DFEKFARTYSQDGSASQGGDLGWISPGETVPEFERAMNALQDGQISQPIRTEYGYHLIQV 400

Query: 273 CDKRDLGGEIALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             +R+  G +  +  +        K E+  A+++++LR ++ + Y
Sbjct: 401 VGRREAEGSVQQQMDIARQAIGQRKAEQAYADWLRELRDSSYVQY 445


>gi|218661101|ref|ZP_03517031.1| peptidyl-prolyl cis-trans isomerase protein [Rhizobium etli IE4771]
          Length = 295

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 140/295 (47%), Gaps = 10/295 (3%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
           +        +S ++  +NG  IT GD++KR A L+LQ    +  K A ++LI ETLK+QE
Sbjct: 2   MGLAGPALAASEVQAVVNGTAITSGDVAKRQAFLRLQHTKADA-KTAKEQLIDETLKRQE 60

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
           + +  ++     V+  F + +    LS E  S  LD+ G+G +HFK ++A+Q  WP VV 
Sbjct: 61  VARVRMSVSQQDVDASFARFSAGNKLSVEQMSQILDRAGVGVDHFKGFIAVQMSWPRVVN 120

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
             +         ++ +   +                     + +      KR  +AE SR
Sbjct: 121 ARYGSTSRLSNYDLVSRMMQNNKQKPVTTEYMLQQIIFVIPQAKRAAITGKRKGEAEASR 180

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY 269
            + P   ++ + FA+ + DV++     +L  ++ P ++ L+++++ NTT   VT KGVEY
Sbjct: 181 SKFPGC-DQSKVFAATMRDVAVRDLGRMLAPEIPPDWKPLVEQAKGNTTGTRVTDKGVEY 239

Query: 270 IAICDKRDLGGEIALKAYLSAQNTPTKI--------EKHEAEYVKKLRSNAIIHY 316
           +AIC +R +  + A +     ++              ++  +Y+ +LR  A I Y
Sbjct: 240 LAICSQRQVSDDQAAEMVFRQEDLDKSKAGKNGPPENENSKKYLDELRKKAQIAY 294


>gi|251767814|ref|ZP_02268497.2| putative survival protein SurA [Burkholderia mallei PRL-20]
 gi|254360242|ref|ZP_04976512.1| putative survival protein SurA [Burkholderia mallei 2002721280]
 gi|148029482|gb|EDK87387.1| putative survival protein SurA [Burkholderia mallei 2002721280]
 gi|243061646|gb|EES43832.1| putative survival protein SurA [Burkholderia mallei PRL-20]
          Length = 450

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/337 (11%), Positives = 113/337 (33%), Gaps = 31/337 (9%)

Query: 8   SLSDFIKLLTTYFVLIIFCIVPIVSYKSWAM-------SSRIRTTINGEVITDGDISKRI 60
           ++   ++       L+   I    S  + A+       +  +   +N +VIT  ++ +R+
Sbjct: 2   AMKKTLRFAAVASGLVASLITVAPSASAQALRAQGASLADEVVAVVNNDVITGRELDQRV 61

Query: 61  ALLKLQKING--------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
            L+  +            +L    + ++++E ++ Q  +  GI  D+ TV     + A+ 
Sbjct: 62  GLIARRLQQQKAPVPPTDQLRAQVLNQMVLERIQVQRAKDDGIVVDNATVQATLGRLAQA 121

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK- 171
            G+  + + + ++ QG+  + F +    + +   + + +   K    + E+ +     + 
Sbjct: 122 NGMQLDQYKARIEAQGVPWDLFVRDARTELMLSKLREKEVDSKITVSDAEVASYIASQRG 181

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFV----QKRIKDAEESRLRLPKDCNKLEKFASKIH 227
                +  +R     +       Q  +    +K     +++           +  +    
Sbjct: 182 PNAGSQQDLRLEHIFVKAPANAPQADIDVAQKKAEGLLQQALASGANFERLAKNQSEADD 241

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP--YVTQKGVEYIAICDKR----DLGGE 281
               G   +   + L     + + K +    NP       G E + + ++R         
Sbjct: 242 AKKGGDLGFKSPASLPSDVVDAVSKLRPGEVNPTLIRVPDGFEIVRLVERRASQNPAASP 301

Query: 282 IALKAYLSAQNT---PTKIEKHEAEYVKKLRSNAIIH 315
             ++ ++          K E    + +  +R    I 
Sbjct: 302 KIVQTHVRHILLRVGEGKSESQARQQLIDIRRQ--IE 336



 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 16/156 (10%), Positives = 54/156 (34%), Gaps = 2/156 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +     +    + +          +   + +++   ++++ D                 +
Sbjct: 289 VERRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDIRRQIESGGDFEKFARTY 348

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           +        G   ++   +  P+F+  +        +NP  T+ G   I +  +RD  G 
Sbjct: 349 SQDGSASQGGDLGWISPGEPVPEFERAMNTLQDGQVSNPVRTEYGYHLIQVLGRRDAEGS 408

Query: 282 IALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +  +  +        K E+  ++++++LR ++ +  
Sbjct: 409 VQQQMDIARQAIGQRKAEQAYSDWLRELRDSSYVQI 444


>gi|121956451|sp|Q8Y220|SURA_RALSO RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
          Length = 496

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/304 (14%), Positives = 95/304 (31%), Gaps = 21/304 (6%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKRI----ALLKLQKINGELEK----IAVQEL 80
                    +   +   +N ++IT  ++  R       L+ Q     +        +++L
Sbjct: 77  TASGAARSQLVDEVVAVVNTDIITRRELLDRADLVERTLQSQNRQVPVRADLLGEVLEQL 136

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I+E ++ Q  ++SGI      V+      A+   LS     S L + G+  + +++ L  
Sbjct: 137 ILERVQAQTAKESGIRVSDADVDRAVESVAQRNNLSVSQLKSKLAQSGLAYDKYREDLRQ 196

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV----REYLIRTVLFSIPDNKLQNQG 196
           + +   +   +   K    + EI     +          +EY +  +L  + ++    Q 
Sbjct: 197 EILLARLRDREVDSKVQVFDGEIDNFLAQQGGSAASSGVQEYNVAQILVPVAEDASAEQK 256

Query: 197 FVQKRIKDA-EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
              +   ++  +               +        G+        L  QF N +     
Sbjct: 257 AAARGKAESLLKQVQGGADFAKLARDSSGAPEAAQGGELGLRPIGRLPAQFANAVVDLKP 316

Query: 255 NNTT-NPYVTQKGVEYIAICDKRDLGGEIALK------AYLSAQNTPTKIEKHEAEYVKK 307
                    +  G   + + DKR  G  I  K       ++  +  PT         +  
Sbjct: 317 GQVVDQVIESPAGFHVLKLVDKRAQGTAITAKVAQTQVRHILIKTGPTMSADDARRQLAG 376

Query: 308 LRSN 311
           LR  
Sbjct: 377 LRDR 380



 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 21/178 (11%), Positives = 64/178 (35%), Gaps = 2/178 (1%)

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
                 VV        G   +++   + +   IT +    +     I      +    ++
Sbjct: 313 DLKPGQVVDQVIESPAGFHVLKLVDKRAQGTAITAKVAQTQVRHILIKTGPTMSADDARR 372

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN 259
           ++    +  +      +   +++      + G+  ++    L P+F+  +        + 
Sbjct: 373 QLAGLRDRIVHGYDFGDAARRYSQDTSASAGGELGWVSPGQLVPEFEQAMGLLKPGEVSQ 432

Query: 260 PYVTQKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           P  +Q G+  I +  +R+    +   + Y  +     K++    +++++LR +A + Y
Sbjct: 433 PVQSQFGLHLIQVEGRREAEVPVDRQRDYARSVIREQKVQAAYEDWLRQLRDSAHVEY 490


>gi|17545235|ref|NP_518637.1| peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum
           GMI1000]
 gi|17427526|emb|CAD14044.1| probable peptidyl-prolyl cis-trans isomerase (rotamase c) protein
           [Ralstonia solanacearum GMI1000]
          Length = 498

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/304 (14%), Positives = 95/304 (31%), Gaps = 21/304 (6%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKRI----ALLKLQKINGELEK----IAVQEL 80
                    +   +   +N ++IT  ++  R       L+ Q     +        +++L
Sbjct: 79  TASGAARSQLVDEVVAVVNTDIITRRELLDRADLVERTLQSQNRQVPVRADLLGEVLEQL 138

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I+E ++ Q  ++SGI      V+      A+   LS     S L + G+  + +++ L  
Sbjct: 139 ILERVQAQTAKESGIRVSDADVDRAVESVAQRNNLSVSQLKSKLAQSGLAYDKYREDLRQ 198

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV----REYLIRTVLFSIPDNKLQNQG 196
           + +   +   +   K    + EI     +          +EY +  +L  + ++    Q 
Sbjct: 199 EILLARLRDREVDSKVQVFDGEIDNFLAQQGGSAASSGVQEYNVAQILVPVAEDASAEQK 258

Query: 197 FVQKRIKDA-EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
              +   ++  +               +        G+        L  QF N +     
Sbjct: 259 AAARGKAESLLKQVQGGADFAKLARDSSGAPEAAQGGELGLRPIGRLPAQFANAVVDLKP 318

Query: 255 NNTT-NPYVTQKGVEYIAICDKRDLGGEIALK------AYLSAQNTPTKIEKHEAEYVKK 307
                    +  G   + + DKR  G  I  K       ++  +  PT         +  
Sbjct: 319 GQVVDQVIESPAGFHVLKLVDKRAQGTAITAKVAQTQVRHILIKTGPTMSADDARRQLAG 378

Query: 308 LRSN 311
           LR  
Sbjct: 379 LRDR 382



 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 21/178 (11%), Positives = 64/178 (35%), Gaps = 2/178 (1%)

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
                 VV        G   +++   + +   IT +    +     I      +    ++
Sbjct: 315 DLKPGQVVDQVIESPAGFHVLKLVDKRAQGTAITAKVAQTQVRHILIKTGPTMSADDARR 374

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN 259
           ++    +  +      +   +++      + G+  ++    L P+F+  +        + 
Sbjct: 375 QLAGLRDRIVHGYDFGDAARRYSQDTSASAGGELGWVSPGQLVPEFEQAMGLLKPGEVSQ 434

Query: 260 PYVTQKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           P  +Q G+  I +  +R+    +   + Y  +     K++    +++++LR +A + Y
Sbjct: 435 PVQSQFGLHLIQVEGRREAEVPVDRQRDYARSVIREQKVQAAYEDWLRQLRDSAHVEY 492


>gi|120613390|ref|YP_973068.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
           AAC00-1]
 gi|120591854|gb|ABM35294.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
           AAC00-1]
          Length = 476

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 95/273 (34%), Gaps = 16/273 (5%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQK--------INGELEKIAVQELIVETLKKQE 89
            +  I   +N E IT+ ++  R+A ++ Q             + +  ++ LI E ++ Q 
Sbjct: 68  QADYIVAVVNTEPITNNEVQARVARVEHQLAAQGGERPPRRVIAREVLERLINEKIQVQM 127

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
             +SGI  D   V+      AR   +S  +    L   GI    F+  L  Q +   + +
Sbjct: 128 ATESGIKVDDYAVSQAEQSVARQNSVSIPEMHRRLAADGISPERFRSELRNQLLIQRLRE 187

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIR-----TVLFSIPDNKLQNQGFVQKRIKD 204
            D   +    ++++    +  +   + +          +L S+P+N        +++   
Sbjct: 188 RDVESRVRVSDLDVDQYMRDQQQSAMSDPSKIELNLGHILVSVPENASPEVVEQRRQRAQ 247

Query: 205 AEESRLRLPKDCNK-LEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYV 262
               R+R  +D  K     +      + G+            F + + +        P  
Sbjct: 248 QAADRVRAGEDFAKVARDLSDAPEAPTGGELGLRPADRYPDLFLRTVQQVPVGGIAGPVR 307

Query: 263 TQKGVEYIAICDK-RDLGGEIALKAYLSAQNTP 294
           +  G   + + ++ R      AL+ ++      
Sbjct: 308 SPAGFHVLRVIERSRAGIPATALQNHVRHILLR 340



 Score = 97.1 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 37/106 (34%), Gaps = 2/106 (1%)

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                   + +        G   +       P+F+  +     +  + P V++ GV  I 
Sbjct: 366 ADFATLAREHSQDGSAKQGGDLGWAGPGRYVPEFEEAVDALKPDEISQPVVSRFGVHLIQ 425

Query: 272 ICDKRDLGGEI-ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           + ++R+        +  +       K+E+    + ++ R+ A + Y
Sbjct: 426 LLERREAKLTQREQRDMVRDAVREKKLEEAFTNWAQEARARAYVEY 471


>gi|114328860|ref|YP_746017.1| peptidyl-prolyl cis-trans isomerase [Granulibacter bethesdensis
           CGDNIH1]
 gi|114317034|gb|ABI63094.1| peptidyl-prolyl cis-trans isomerase [Granulibacter bethesdensis
           CGDNIH1]
          Length = 468

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 94/267 (35%), Gaps = 9/267 (3%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK-------IAVQELIVET 84
           +  S    + I   +NG+VI+ GD+  R  L  +       ++         +++L+ E 
Sbjct: 62  APASSPDETSIVAVVNGDVISKGDVDARRRLFAMSTGLPMSKEVLDRLTPQVLRQLVDEK 121

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
           L+ QEI++ GI    + + +      +  G+  +     L   G+        + +Q  W
Sbjct: 122 LRLQEIQRRGIVITDSDIAHSIQGMEQRNGMQPDALRHKLAADGVSMRTLIDQIRVQLGW 181

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
             V++     +    + EI   ++ + +   +     + +F   D+  + Q         
Sbjct: 182 TRVLRQQLGERVRISDKEIQDEEELLASQKGQTEYRVSEIFIPVDDPSRAQAAHDFADT- 240

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVT 263
             +             +F+     +  G   ++  + L       L +      +NP   
Sbjct: 241 VIQQLRSGAPFPVVAAQFSQSQTALEGGDLGWVQPNQLDPQVVSVLKEMPPGAISNPIDV 300

Query: 264 QKGVEYIAICDKRDLGGEIALKAYLSA 290
             G+E +A+  KR +G +      +  
Sbjct: 301 AGGIEIVALRGKRIIGNDQGTALSIRQ 327



 Score = 47.4 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/255 (11%), Positives = 69/255 (27%), Gaps = 4/255 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I+D +I     LL  QK   E     +   + +  + Q       T      +       
Sbjct: 195 ISDKEIQDEEELLASQKGQTEYRVSEIFIPVDDPSRAQAAHDFADTVIQQLRSGAPFPVV 254

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS--IWPDVVKNDFMLKYGNLEMEIPANKQ 168
                 ++      D   +  N     +      + P  + N   +  G   + +   + 
Sbjct: 255 AAQFSQSQTALEGGDLGWVQPNQLDPQVVSVLKEMPPGAISNPIDVAGGIEIVALRGKRI 314

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
              +      + +                 Q++  +  ++      DC  +E  +  +  
Sbjct: 315 IGNDQGTALSIRQVFYPFTTPLNPAAPTDQQRKTLEHAKAAAAAMHDCAAVEAASKAMGG 374

Query: 229 VSIGKAQYLLESDL--HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA 286
                   L    +        L        + P V+Q G+  + +C +      +  K 
Sbjct: 375 SRPSDPGELRLESINPPQFRALLASLPVGQPSQPIVSQDGIAIMMVCSRTQKNFGLPGKE 434

Query: 287 YLSAQNTPTKIEKHE 301
            +S Q    ++E   
Sbjct: 435 DISNQILGERVETAS 449


>gi|53725016|ref|YP_102044.1| survival protein SurA [Burkholderia mallei ATCC 23344]
 gi|67641452|ref|ZP_00440230.1| chaperone SurA [Burkholderia mallei GB8 horse 4]
 gi|121598370|ref|YP_994032.1| putative survival protein SurA [Burkholderia mallei SAVP1]
 gi|124385555|ref|YP_001028304.1| putative survival protein SurA [Burkholderia mallei NCTC 10229]
 gi|126449043|ref|YP_001081948.1| putative survival protein SurA [Burkholderia mallei NCTC 10247]
 gi|254176840|ref|ZP_04883497.1| putative survival protein SurA [Burkholderia mallei ATCC 10399]
 gi|254203730|ref|ZP_04910090.1| putative survival protein SurA [Burkholderia mallei FMH]
 gi|254208705|ref|ZP_04915053.1| putative survival protein SurA [Burkholderia mallei JHU]
 gi|81685183|sp|Q62MM4|SURA_BURMA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|52428439|gb|AAU49032.1| survival protein SurA, putative [Burkholderia mallei ATCC 23344]
 gi|121227180|gb|ABM49698.1| putative survival protein SurA [Burkholderia mallei SAVP1]
 gi|124293575|gb|ABN02844.1| putative survival protein SurA [Burkholderia mallei NCTC 10229]
 gi|126241913|gb|ABO05006.1| putative survival protein SurA [Burkholderia mallei NCTC 10247]
 gi|147745242|gb|EDK52322.1| putative survival protein SurA [Burkholderia mallei FMH]
 gi|147750581|gb|EDK57650.1| putative survival protein SurA [Burkholderia mallei JHU]
 gi|160697881|gb|EDP87851.1| putative survival protein SurA [Burkholderia mallei ATCC 10399]
 gi|238522391|gb|EEP85835.1| chaperone SurA [Burkholderia mallei GB8 horse 4]
          Length = 448

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/336 (11%), Positives = 112/336 (33%), Gaps = 31/336 (9%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAM-------SSRIRTTINGEVITDGDISKRIA 61
           +   ++       L+   I    S  + A+       +  +   +N +VIT  ++ +R+ 
Sbjct: 1   MKKTLRFAAVASGLVASLITVAPSASAQALRAQGASLADEVVAVVNNDVITGRELDQRVG 60

Query: 62  LLKLQKING--------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
           L+  +            +L    + ++++E ++ Q  +  GI  D+ TV     + A+  
Sbjct: 61  LIARRLQQQKAPVPPTDQLRAQVLNQMVLERIQVQRAKDDGIVVDNATVQATLGRLAQAN 120

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK-N 172
           G+  + + + ++ QG+  + F +    + +   + + +   K    + E+ +     +  
Sbjct: 121 GMQLDQYKARIEAQGVPWDLFVRDARTELMLSKLREKEVDSKITVSDAEVASYIASQRGP 180

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFV----QKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +  +R     +       Q  +    +K     +++           +  +     
Sbjct: 181 NAGSQQDLRLEHIFVKAPANAPQADIDVAQKKAEGLLQQALASGANFERLAKNQSEADDA 240

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP--YVTQKGVEYIAICDKR----DLGGEI 282
              G   +   + L     + + K +    NP       G E + + ++R          
Sbjct: 241 KKGGDLGFKSPASLPSDVVDAVSKLRPGEVNPTLIRVPDGFEIVRLVERRASQNPAASPK 300

Query: 283 ALKAYLSAQNT---PTKIEKHEAEYVKKLRSNAIIH 315
            ++ ++          K E    + +  +R    I 
Sbjct: 301 IVQTHVRHILLRVGEGKSESQARQQLIDIRRQ--IE 334



 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 16/156 (10%), Positives = 54/156 (34%), Gaps = 2/156 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +     +    + +          +   + +++   ++++ D                 +
Sbjct: 287 VERRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDIRRQIESGGDFEKFARTY 346

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           +        G   ++   +  P+F+  +        +NP  T+ G   I +  +RD  G 
Sbjct: 347 SQDGSASQGGDLGWISPGEPVPEFERAMNTLQDGQVSNPVRTEYGYHLIQVLGRRDAEGS 406

Query: 282 IALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +  +  +        K E+  ++++++LR ++ +  
Sbjct: 407 VQQQMDIARQAIGQRKAEQAYSDWLRELRDSSYVQI 442


>gi|149186120|ref|ZP_01864434.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Erythrobacter sp.
           SD-21]
 gi|148830151|gb|EDL48588.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Erythrobacter sp.
           SD-21]
          Length = 448

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 88/279 (31%), Gaps = 11/279 (3%)

Query: 44  TTINGEVITDGDISKRIALLKLQKIN-------GELEKIAVQELIVETLKKQEIEKSGIT 96
             +NG VIT  D+ +R+ALL               +    ++ LI ETL+ Q  E   I 
Sbjct: 59  AVVNGYVITGTDLDQRLALLVNANQTEIPAEELQRVRAQVLRNLIDETLQIQAAEAEEIV 118

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
                V   F + A       ED  ++L   G      K+ +  +  W  +++       
Sbjct: 119 ISDAEVEQTFARVAAQNNQRPEDMENYLASIGSSSASLKRQIRGELAWQRLLRQKVSFFV 178

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
                E+    ++++     +      +        +N   VQ   +   E   +     
Sbjct: 179 NVSAEEVNELMERLEAAKGTDEYWLWEI--FMSATPENDAAVQANAQKIMEQLRQGGSFV 236

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDL--HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICD 274
               +F+        G   ++  + L        + +        P     G   + + D
Sbjct: 237 AYARQFSEASTAAVGGDLDWIHLAQLGDPQLETVVAQMEAGQLVGPIKIPGGYWIVYLRD 296

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           KR +       A LS +      +   A  V K + +A 
Sbjct: 297 KRQVLMADPRDAMLSLKQIQIDFDPAAAPEVNKQKLDAF 335



 Score = 56.6 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)

Query: 237 LLESDLHPQFQNLLKK-SQNNTTNPYVT-QKGVEYIAICDKRDLGGEI-ALKAYLSAQNT 293
           +    L  Q QN++       TT P+ + ++GV  + +C + D           L AQ  
Sbjct: 365 IRARALPEQLQNIMLSLQIGETTPPFGSLEEGVRVLMLCGRDDPESSEGPNFDELMAQIE 424

Query: 294 PTKIEKHEAEYVKKLRSNAIIHY 316
             +I K    Y++ LR++A I Y
Sbjct: 425 DERINKAAQRYLRDLRNDAYIEY 447


>gi|301059205|ref|ZP_07200143.1| SurA N-terminal domain protein [delta proteobacterium NaphS2]
 gi|300446695|gb|EFK10522.1| SurA N-terminal domain protein [delta proteobacterium NaphS2]
          Length = 324

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 121/319 (37%), Gaps = 20/319 (6%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMS----SRIRTTINGEVITDGDISKRIALL------- 63
           +  +   +++F  V   ++     +    +R+   +N +V+T  +++ R+  +       
Sbjct: 1   MRKSTIFVLMFLFVGANAFLQGKANGEIYNRVVAIVNADVVTLYELNTRLTQMTGMAPDA 60

Query: 64  ---KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
              K +    E+ +  ++ LI E +  ++I++  I    + V+       R   ++ ED 
Sbjct: 61  LKRKSESQYLEMRRKVLEMLIEEKIAIEKIKEMKINVPQSEVDAAIETLKRENDMTQEDL 120

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
            + L  QG+  + +++ L  +     ++  +   K    + E+ A     K+    +  +
Sbjct: 121 VAGLKAQGLSLDEYRKRLKTELERRRLINYEVRSKIIITDEEVQAYYDTHKDNYSTKGKV 180

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYL 237
              +  +      N+   +   + A++   ++    N      +F++       G     
Sbjct: 181 HLAMIFLKQEDPGNREEARALRRKADQIIGKIKAGENFGTLAAQFSNGPGAKDGGDLGVF 240

Query: 238 LESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTP 294
             S+L+ +    +K  S      P V   G++ I + +K +        +K  + +    
Sbjct: 241 NISELNSEMAASIKDLSSGEIGTPIVRPNGIQIIKVVEKDEGGEKSFEKVKNAIRSTLYR 300

Query: 295 TKIEKHEAEYVKKLRSNAI 313
            K+ +    ++K LR  + 
Sbjct: 301 EKMNQAYDAWIKDLREKSY 319


>gi|126441500|ref|YP_001057745.1| putative survival protein SurA [Burkholderia pseudomallei 668]
 gi|134279812|ref|ZP_01766524.1| putative survival protein SurA [Burkholderia pseudomallei 305]
 gi|217419752|ref|ZP_03451258.1| putative chaperone surA [Burkholderia pseudomallei 576]
 gi|226830776|ref|YP_001064989.2| putative survival protein SurA [Burkholderia pseudomallei 1106a]
 gi|237810895|ref|YP_002895346.1| chaperone SurA [Burkholderia pseudomallei MSHR346]
 gi|254258573|ref|ZP_04949627.1| putative chaperone surA [Burkholderia pseudomallei 1710a]
 gi|126220993|gb|ABN84499.1| putative chaperone surA [Burkholderia pseudomallei 668]
 gi|134249012|gb|EBA49094.1| putative survival protein SurA [Burkholderia pseudomallei 305]
 gi|210148311|gb|ABN91359.2| putative chaperone SurA [Burkholderia pseudomallei 1106a]
 gi|217397056|gb|EEC37072.1| putative chaperone surA [Burkholderia pseudomallei 576]
 gi|237504702|gb|ACQ97020.1| chaperone SurA [Burkholderia pseudomallei MSHR346]
 gi|254217262|gb|EET06646.1| putative chaperone surA [Burkholderia pseudomallei 1710a]
          Length = 450

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/337 (11%), Positives = 113/337 (33%), Gaps = 31/337 (9%)

Query: 8   SLSDFIKLLTTYFVLIIFCIVPIVSYKSWAM-------SSRIRTTINGEVITDGDISKRI 60
           ++   ++       L+   I    S  + A+       +  +   +N +VIT  ++ +R+
Sbjct: 2   AMKKTLRFAAVASGLVASLITVAPSASAQALRAQGASLADEVVAVVNNDVITGRELDQRV 61

Query: 61  ALLKLQKING--------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
            L+  +            +L    + ++++E ++ Q  +  GI  D+ TV     + A+ 
Sbjct: 62  GLIARRLQQQKAPVPPTDQLRAQVLNQMVLERIQVQRAKDDGIVVDNATVQATLGRLAQA 121

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK- 171
            G+  + + + ++ QG+  + F +    + +   + + +   K    + E+ +     + 
Sbjct: 122 NGMQLDQYKARIEAQGVPWDLFVRDARTELMLSKLREKEVDSKITVSDAEVASYIASQRG 181

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFV----QKRIKDAEESRLRLPKDCNKLEKFASKIH 227
                +  +R     +       Q  +    +K     +++           +  +    
Sbjct: 182 PNAGSQQDLRLEHIFVKAPANAPQADIDVAQKKAEGLLQQALASGANFERLAKNQSEADD 241

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP--YVTQKGVEYIAICDKR----DLGGE 281
               G   +   + L     + + K +    NP       G E + + ++R         
Sbjct: 242 AKKGGDLGFKSPASLPSDVVDAVSKLRPGEVNPTLIRVPDGFEIVRLVERRASQNPAASP 301

Query: 282 IALKAYLSAQNT---PTKIEKHEAEYVKKLRSNAIIH 315
             ++ ++          K E    + +  +R    I 
Sbjct: 302 KIVQTHVRHILLRVGEGKSESQARQQLIDIRRQ--IE 336



 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 16/156 (10%), Positives = 54/156 (34%), Gaps = 2/156 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +     +    + +          +   + +++   ++++ D                 +
Sbjct: 289 VERRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDIRRQIESGGDFEKFARTY 348

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           +        G   ++   +  P+F+  +        +NP  T+ G   I +  +RD  G 
Sbjct: 349 SQDGSASQGGDLGWISPGETVPEFERAMNTLQDGQVSNPVRTEYGYHLIQVLGRRDAEGS 408

Query: 282 IALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +  +  +        K E+  ++++++LR ++ +  
Sbjct: 409 VQQQMDIARQAIGQRKAEQAYSDWLRELRDSSYVQI 444


>gi|76810003|ref|YP_332285.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 1710b]
 gi|167718164|ref|ZP_02401400.1| putative survival protein SurA [Burkholderia pseudomallei DM98]
 gi|167737195|ref|ZP_02409969.1| putative survival protein SurA [Burkholderia pseudomallei 14]
 gi|167822803|ref|ZP_02454274.1| putative survival protein SurA [Burkholderia pseudomallei 9]
 gi|167844378|ref|ZP_02469886.1| putative survival protein SurA [Burkholderia pseudomallei B7210]
 gi|167901377|ref|ZP_02488582.1| putative survival protein SurA [Burkholderia pseudomallei NCTC
           13177]
 gi|167909606|ref|ZP_02496697.1| putative survival protein SurA [Burkholderia pseudomallei 112]
 gi|167917621|ref|ZP_02504712.1| putative survival protein SurA [Burkholderia pseudomallei BCC215]
 gi|226196777|ref|ZP_03792357.1| putative chaperone surA [Burkholderia pseudomallei Pakistan 9]
 gi|242314929|ref|ZP_04813945.1| putative chaperone surA [Burkholderia pseudomallei 1106b]
 gi|254181756|ref|ZP_04888353.1| putative survival protein SurA [Burkholderia pseudomallei 1655]
 gi|254196558|ref|ZP_04902982.1| putative survival protein SurA [Burkholderia pseudomallei S13]
 gi|254296203|ref|ZP_04963660.1| putative survival protein SurA [Burkholderia pseudomallei 406e]
 gi|122070636|sp|Q3JVW8|SURA_BURP1 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|76579456|gb|ABA48931.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 1710b]
 gi|157805631|gb|EDO82801.1| putative survival protein SurA [Burkholderia pseudomallei 406e]
 gi|169653301|gb|EDS85994.1| putative survival protein SurA [Burkholderia pseudomallei S13]
 gi|184212294|gb|EDU09337.1| putative survival protein SurA [Burkholderia pseudomallei 1655]
 gi|225931308|gb|EEH27315.1| putative chaperone surA [Burkholderia pseudomallei Pakistan 9]
 gi|242138168|gb|EES24570.1| putative chaperone surA [Burkholderia pseudomallei 1106b]
          Length = 448

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/336 (11%), Positives = 112/336 (33%), Gaps = 31/336 (9%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAM-------SSRIRTTINGEVITDGDISKRIA 61
           +   ++       L+   I    S  + A+       +  +   +N +VIT  ++ +R+ 
Sbjct: 1   MKKTLRFAAVASGLVASLITVAPSASAQALRAQGASLADEVVAVVNNDVITGRELDQRVG 60

Query: 62  LLKLQKING--------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
           L+  +            +L    + ++++E ++ Q  +  GI  D+ TV     + A+  
Sbjct: 61  LIARRLQQQKAPVPPTDQLRAQVLNQMVLERIQVQRAKDDGIVVDNATVQATLGRLAQAN 120

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK-N 172
           G+  + + + ++ QG+  + F +    + +   + + +   K    + E+ +     +  
Sbjct: 121 GMQLDQYKARIEAQGVPWDLFVRDARTELMLSKLREKEVDSKITVSDAEVASYIASQRGP 180

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFV----QKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +  +R     +       Q  +    +K     +++           +  +     
Sbjct: 181 NAGSQQDLRLEHIFVKAPANAPQADIDVAQKKAEGLLQQALASGANFERLAKNQSEADDA 240

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP--YVTQKGVEYIAICDKR----DLGGEI 282
              G   +   + L     + + K +    NP       G E + + ++R          
Sbjct: 241 KKGGDLGFKSPASLPSDVVDAVSKLRPGEVNPTLIRVPDGFEIVRLVERRASQNPAASPK 300

Query: 283 ALKAYLSAQNT---PTKIEKHEAEYVKKLRSNAIIH 315
            ++ ++          K E    + +  +R    I 
Sbjct: 301 IVQTHVRHILLRVGEGKSESQARQQLIDIRRQ--IE 334



 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 16/156 (10%), Positives = 54/156 (34%), Gaps = 2/156 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +     +    + +          +   + +++   ++++ D                 +
Sbjct: 287 VERRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDIRRQIESGGDFEKFARTY 346

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           +        G   ++   +  P+F+  +        +NP  T+ G   I +  +RD  G 
Sbjct: 347 SQDGSASQGGDLGWISPGETVPEFERAMNTLQDGQVSNPVRTEYGYHLIQVLGRRDAEGS 406

Query: 282 IALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +  +  +        K E+  ++++++LR ++ +  
Sbjct: 407 VQQQMDIARQAIGQRKAEQAYSDWLRELRDSSYVQI 442


>gi|167892891|ref|ZP_02480293.1| putative survival protein SurA [Burkholderia pseudomallei 7894]
 gi|254187685|ref|ZP_04894197.1| putative survival protein SurA [Burkholderia pseudomallei Pasteur
           52237]
 gi|157935365|gb|EDO91035.1| putative survival protein SurA [Burkholderia pseudomallei Pasteur
           52237]
          Length = 448

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/336 (11%), Positives = 112/336 (33%), Gaps = 31/336 (9%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAM-------SSRIRTTINGEVITDGDISKRIA 61
           +   ++       L+   I    S  + A+       +  +   +N +VIT  ++ +R+ 
Sbjct: 1   MKKTLRFAAAASGLVASLITVAPSASAQALRAQGASLADEVVAVVNNDVITGRELDQRVG 60

Query: 62  LLKLQKING--------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
           L+  +            +L    + ++++E ++ Q  +  GI  D+ TV     + A+  
Sbjct: 61  LIARRLQQQKAPVPPTDQLRAQVLNQMVLERIQVQRAKDDGIVVDNATVQATLGRLAQAN 120

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK-N 172
           G+  + + + ++ QG+  + F +    + +   + + +   K    + E+ +     +  
Sbjct: 121 GMQLDQYKARIEAQGVPWDLFVRDARTELMLSKLREKEVDSKITVSDAEVASYIASQRGP 180

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFV----QKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +  +R     +       Q  +    +K     +++           +  +     
Sbjct: 181 NAGSQQDLRLEHIFVKAPANAPQADIDVAQKKAEGLLQQALASGANFERLAKNQSEADDA 240

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP--YVTQKGVEYIAICDKR----DLGGEI 282
              G   +   + L     + + K +    NP       G E + + ++R          
Sbjct: 241 KKGGDLGFKSPASLPSDVVDAVSKLRPGEVNPTLIRVPDGFEIVRLVERRASQNPAASPK 300

Query: 283 ALKAYLSAQNT---PTKIEKHEAEYVKKLRSNAIIH 315
            ++ ++          K E    + +  +R    I 
Sbjct: 301 IVQTHVRHILLRVGEGKSESQARQQLIDIRRQ--IE 334



 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 16/156 (10%), Positives = 54/156 (34%), Gaps = 2/156 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +     +    + +          +   + +++   ++++ D                 +
Sbjct: 287 VERRASQNPAASPKIVQTHVRHILLRVGEGKSESQARQQLIDIRRQIESGGDFEKFARTY 346

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           +        G   ++   +  P+F+  +        +NP  T+ G   I +  +RD  G 
Sbjct: 347 SQDGSASQGGDLGWISPGETVPEFERAMNTLQDGQVSNPVRTEYGYHLIQVLGRRDAEGS 406

Query: 282 IALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +  +  +        K E+  ++++++LR ++ +  
Sbjct: 407 VQQQMDIARQAIGQRKAEQAYSDWLRELRDSSYVQI 442


>gi|148264649|ref|YP_001231355.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           uraniireducens Rf4]
 gi|146398149|gb|ABQ26782.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           uraniireducens Rf4]
          Length = 326

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 84/286 (29%), Gaps = 14/286 (4%)

Query: 44  TTINGEVITDGDISKRIALLKLQKI--------NGELEKIAVQELIVETLKKQEIEKSGI 95
             +NG  I+  + +  +  LK  +           E+++ A+  LI   L  QE  K GI
Sbjct: 37  AVVNGAPISREECNGELERLKRSRSVRLFSPALLKEIQQEALDNLIRRELIYQESRKGGI 96

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
              +  V+    +         E  S+         +               +   F  +
Sbjct: 97  GVAATAVDEELARLKTRFANEMEFSSALSSLHVSEASLRNIVER-GIAVRTYIDRQFAGQ 155

Query: 156 YGNLEMEIPANKQKMKNITVREYLIR--TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
               + E     +   +   R   +R   +L        + +   +K+I+   E   +  
Sbjct: 156 STVTDEEKKGYYRSHPDTFKRPLQVRISHILVRTGGMTGKARAEAEKKIEGIREKVGKGE 215

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAI 272
                   ++        G   +    ++    ++ +       T+     + G+  I +
Sbjct: 216 SFDALARAYSECGSKEQGGDLGFFRRGEMARVVEDAVMDLKVGETSGIVEDRFGLHLIRL 275

Query: 273 CDKRDLGG--EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            D++        A +  +S      K  +    Y   LR  A +  
Sbjct: 276 TDRKPEQVIAYEAAEGKISEYLKQEKAMEKANRYAGDLRKKARVEI 321


>gi|190891133|ref|YP_001977675.1| peptidyl-prolyl cis-trans isomerase [Rhizobium etli CIAT 652]
 gi|218517103|ref|ZP_03513943.1| probable peptidyl-prolyl cis-trans isomerase protein [Rhizobium
           etli 8C-3]
 gi|190696412|gb|ACE90497.1| probable peptidyl-prolyl cis-trans isomerase protein [Rhizobium
           etli CIAT 652]
          Length = 314

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 76/287 (26%), Positives = 137/287 (47%), Gaps = 10/287 (3%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            +S ++  +NG  IT GD++KR A L+LQ    +  K A ++LI ETLK+QE+ +  ++ 
Sbjct: 29  AASEVQAVVNGTAITSGDVAKRQAFLRLQHTAADA-KTAKEQLIDETLKRQEVARVHMSV 87

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
               V+  F + +    LS    S  LD+ G+G +HFK ++A+Q  WP VV   +     
Sbjct: 88  SQQDVDASFARFSAGNKLSVAQMSQILDRAGVGVDHFKGFIAVQMSWPRVVNARYGSTSR 147

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
               ++ +   +                     + +      KR  +AE SR + P   +
Sbjct: 148 LSNYDLVSRMMQNNKQKPVTTEYMLQQIIFVIPEAKRGAITGKRKGEAEASRSKFPGC-D 206

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
           + + FA+ + DV++     +L  ++ P ++ L+++++ NTT   VT KGVEY+AIC +R 
Sbjct: 207 QAKVFAATMRDVAVRDLGRMLAPEIPPDWKPLVEQAKGNTTGTRVTDKGVEYLAICSQRQ 266

Query: 278 LGGEIALKAYLSAQNTPTKI--------EKHEAEYVKKLRSNAIIHY 316
           +  + A +     ++               +  +Y+ +LR  A I Y
Sbjct: 267 VSDDQAAEMVFRQEDLDKSKAGKNGPPENDNSKKYLDELRKKAQIAY 313


>gi|218671035|ref|ZP_03520706.1| probable peptidyl-prolyl cis-trans isomerase protein [Rhizobium
           etli GR56]
          Length = 314

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 77/287 (26%), Positives = 139/287 (48%), Gaps = 10/287 (3%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            +S ++  +NG  IT GD++KR A L+LQ    +  K A ++LI ETLK+QE+ +  ++ 
Sbjct: 29  AASEVQAVVNGTAITSGDVAKRQAFLRLQHTKADA-KTAKEQLIDETLKRQEVARVRMSV 87

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
               V+  F + +    LS E  S  LD+ G+G +HFK ++A+Q  WP VV   +     
Sbjct: 88  SQQDVDASFARFSAGNKLSVEQMSQILDRAGVGVDHFKGFIAVQMSWPRVVNARYGSTSR 147

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
               ++ +   +                     + +      KR  +AE SR + P   +
Sbjct: 148 LSNYDLVSRMMQNNKQKPVTTEYMLQQIIFVIPQAKRAAITGKRKGEAEASRSKFPGC-D 206

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
           + + FA+ + DV++     +L  ++ P ++ L+++++ NTT   VT KGVEY+AIC +R 
Sbjct: 207 QAKVFAATMRDVAVRDLGRMLAPEIPPDWKPLVEQAKGNTTGTRVTDKGVEYLAICSQRQ 266

Query: 278 LGGEIALKAYLSAQNTPTKI--------EKHEAEYVKKLRSNAIIHY 316
           +  + A +     ++              ++  +Y+ +LR  A I Y
Sbjct: 267 VSDDQAAEMVFRQEDLDKSKAAKNGPPENENSKKYLDELRKKAQIAY 313


>gi|300692473|ref|YP_003753468.1| peptidyl-prolyl cis-trans isomerase (PPIase), involved in
           maturation of outer membrane proteins [Ralstonia
           solanacearum PSI07]
 gi|299079533|emb|CBJ52211.1| peptidyl-prolyl cis-trans isomerase (PPIase), involved in
           maturation of outer membrane proteins [Ralstonia
           solanacearum PSI07]
          Length = 475

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/304 (14%), Positives = 93/304 (30%), Gaps = 21/304 (6%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKRI----ALLKLQKINGELEK----IAVQEL 80
                    +   +   +N ++IT  ++  R       L+ Q              +++L
Sbjct: 56  TASGAARSQLVDEVVAVVNTDIITRRELLDRADLVERTLQSQNRPMPARADLLGEVLEQL 115

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I+E ++ Q  ++SGI      V+      A+   LS     S L + G+  + +++ L  
Sbjct: 116 ILERVQAQTAKESGIRVSDADVDRAVESVAQRNNLSVSQLKSKLVQSGLAYDKYREDLRQ 175

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT----VREYLIRTVLFSIPDNKLQNQG 196
           + +   +   +   K    + EI     +          +EY +  +L  + ++    Q 
Sbjct: 176 EILLARLRDREVDSKVQVFDGEIDNFLAQQGGAAASGGSQEYNVAQILVPVAEDASAEQK 235

Query: 197 FVQKRIKDA-EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
              +   +   +               +        G+        L  QF N +     
Sbjct: 236 AAARGKAEGLLKQVQGGADFAKLARDHSGAPEAAQGGELGLRPIGRLPAQFANAVVDLKP 295

Query: 255 NNTTN-PYVTQKGVEYIAICDKRDLGGEIALK------AYLSAQNTPTKIEKHEAEYVKK 307
                    +  G   + + DKR  G  I  K       ++  +  PT         +  
Sbjct: 296 GQVVGQVIESPAGFHVLKLVDKRVQGTAITAKVAQTQVRHILIKTGPTMPADDARRQLAG 355

Query: 308 LRSN 311
           LR  
Sbjct: 356 LRDR 359



 Score =  114 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 63/178 (35%), Gaps = 2/178 (1%)

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
                 VV        G   +++   + +   IT +    +     I           ++
Sbjct: 292 DLKPGQVVGQVIESPAGFHVLKLVDKRVQGTAITAKVAQTQVRHILIKTGPTMPADDARR 351

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN 259
           ++    +  +      +   +++      + G+  ++    L P+F+  +        + 
Sbjct: 352 QLAGLRDRIVHGYDFGDAARRYSQDASASAGGELGWVSPGQLVPEFEQAMNLLKPGEVSQ 411

Query: 260 PYVTQKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           P  +Q GV  I +  +R+    +   + Y  +     KI+    +++++LR +A + Y
Sbjct: 412 PVQSQFGVHLIQVEGRREAEVPVDRQRDYARSAIREQKIQAAYEDWLRQLRDSAHVEY 469


>gi|118581987|ref|YP_903237.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter
           propionicus DSM 2379]
 gi|118504697|gb|ABL01180.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter
           propionicus DSM 2379]
          Length = 300

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/315 (13%), Positives = 88/315 (27%), Gaps = 53/315 (16%)

Query: 14  KLLTTYFVLIIFCIVPIV-------SYKSWAMSSRIRTTINGEVITDGDISKRIA----L 62
            +  T  + +  C V +        S  +     ++   +NG+ IT GD S+ +      
Sbjct: 3   SITRTKCIAVALCSVALFACQGTPGSSTATKQEGQVLAEVNGKKITSGDFSREVKNLPEY 62

Query: 63  LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
           L+      +  K  +  +++  L  Q+  K G+                           
Sbjct: 63  LRAMATTPQGRKEMLDTMVIRELILQKASKDGLDKGPEIE-------------------- 102

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
                        Q L  + I    +K          + ++     +  +       IR 
Sbjct: 103 ----------EKLQELKKRLIVEAFLKKKVETDAQISDADLKKFYDQNIDKFKAGEQIRA 152

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
                           +K  K+                K +        G   +  +  +
Sbjct: 153 SHIL---------VKTEKEAKEILAQLKGGAAFEELARKHSVDSSSAKGGDLGWFGKGAM 203

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEK 299
            P F+       +   ++   +  G   I +  KR  G      +K  + A   P+K ++
Sbjct: 204 VPAFERAALALKEGQVSDVVKSDFGFHIIKLTGKRPAGTRPFDEVKDQIKAALMPSKQQE 263

Query: 300 HEAEYVKKLRSNAII 314
              +   +L+ +A I
Sbjct: 264 IFQKIKDELKKSAKI 278


>gi|261250209|ref|ZP_05942785.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio orientalis CIP
           102891]
 gi|260939325|gb|EEX95311.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio orientalis CIP
           102891]
          Length = 432

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 38/313 (12%), Positives = 107/313 (34%), Gaps = 12/313 (3%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--- 69
           +K      + ++      +          +   +N  V+   DI   I  LK        
Sbjct: 1   MKFWKQTLLALMIASPINLVQAEPVALDTVAVIVNTSVVLQSDIDTSIKTLKANAKKKGQ 60

Query: 70  -----GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L +   ++LIV+T+++QE E+ G+  D N +N    + A+N   + E   + +
Sbjct: 61  SLPSEEILTEQVTEKLIVDTIQQQEAERLGVRIDDNRLNEAISEIAKNNQQTVEQLRASI 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
             +G+    F++ +  +    +        +   L  E+    + +   T      +   
Sbjct: 121 ASEGLNYAEFREQIRKEIAASEARNALVRRRINILPAEVDNLSELLAQETNATVQYKIGH 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             +  N   ++  ++ + K+  +              ++     +  G   ++ + ++  
Sbjct: 181 IQLRVNDGDDKSEIEAQAKELVKELNNGADFSTMAYTYSKGPKALQGGDWGWMRKEEMPT 240

Query: 245 QFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKH 300
            F + +K +++ +   P+ +  G   + I D +    +        ++  + T    ++ 
Sbjct: 241 IFADQIKLQNKGSVIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDEG 300

Query: 301 EAEYVKKLRSNAI 313
               +  +     
Sbjct: 301 VKNTLNNIIRQIK 313



 Score = 76.6 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 44/112 (39%), Gaps = 3/112 (2%)

Query: 207 ESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQ 264
           + +          ++++         G+  Y       P+F++ +        + P+ T 
Sbjct: 311 QIKAGDATFGELAQQYSQDPGSAAQNGELGYQTSDLYVPEFKHQIDTLPVGQISEPFKTV 370

Query: 265 KGVEYIAICDKRDLG-GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            G   + I D+R++   + ALK          K  +  + +++++R++A + 
Sbjct: 371 HGWHIVEILDRREVDRTDSALKNKAYRILFNRKFNEEASAWLQEIRASAYVE 422


>gi|329923149|ref|ZP_08278648.1| putative foldase protein PrsA [Paenibacillus sp. HGF5]
 gi|328941591|gb|EGG37877.1| putative foldase protein PrsA [Paenibacillus sp. HGF5]
          Length = 398

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 96/303 (31%), Gaps = 25/303 (8%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           ++ +  +     +V IV   +    +     +N   IT  ++   +  +          K
Sbjct: 87  MIASLVLAAALIVVLIVPPFAKGSGNEAIAKVNDVNITKDNLYDELVSVGG--------K 138

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             +  +I E L +QE++   IT     VN        +   S E F+  L + G+  ++ 
Sbjct: 139 QTLNSMITEELIQQELKNKSITVTDADVNKEVDALKASF-PSEEQFNMALQQNGMTLDNL 197

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
           K+    Q     ++      K      E+     + K        +R     +   +   
Sbjct: 198 KEQTKTQVELKKLM----ADKIKVTGEEVKEVYDQNKESFATPEQVRASHILVETKEEAE 253

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-S 253
                       +            ++        + G   +    ++ P F+    K  
Sbjct: 254 AI---------VKQLKEGADFATIAKEKNQDATKDTGGDLNFFGRGEMDPAFEEAAFKLK 304

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           ++  + P  +  G   I + D+++         K  + +Q    K+      Y+++L+  
Sbjct: 305 KDEISEPVKSSFGYHIIKVTDRKEATNPTLEDKKEEIRSQLENQKVYAESTAYIQELKDK 364

Query: 312 AII 314
           A I
Sbjct: 365 ATI 367


>gi|116251332|ref|YP_767170.1| hypothetical protein RL1566 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115255980|emb|CAK07061.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 314

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 78/285 (27%), Positives = 137/285 (48%), Gaps = 10/285 (3%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS 99
           S ++  +NG  IT GD++KR A L+LQ    +  K A ++LI E LK+QE+ +  ++   
Sbjct: 31  SEVKAVVNGTAITSGDVAKRQAFLRLQHTKADA-KTAEEQLIDEALKRQEVARVRMSVSQ 89

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
             V+  F + +    LS E  S  LD+ G+G +HFK ++A+Q  WP VV   +       
Sbjct: 90  QDVDASFARFSSGNKLSPEQMSQILDRAGVGVDHFKGFIAVQMSWPRVVNARYGSTSRLS 149

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
             ++ +   +                     + +      KR  +AE SR + P   ++ 
Sbjct: 150 NYDLVSRMMQNNKQKPVTTEYMLQQIIFVIPQAKRGAITGKRKGEAEASRSKFPGC-DQA 208

Query: 220 EKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
           + FA+ + DVS+     LL  ++ P ++ L+++++ NTT   VT KGVEY+AIC +R + 
Sbjct: 209 KVFAATMRDVSVRDLGRLLAPEIPPDWKPLVEQAKGNTTGTRVTDKGVEYLAICSQRQVS 268

Query: 280 GEIALKAYLSAQNTPTKI--------EKHEAEYVKKLRSNAIIHY 316
            + A +     ++              ++  +Y+ +LR  A I Y
Sbjct: 269 DDQAAEMVFRQEDLDKSKAGKDASPENENSKKYLDELRKKAQIAY 313


>gi|304405097|ref|ZP_07386757.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           curdlanolyticus YK9]
 gi|304345976|gb|EFM11810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           curdlanolyticus YK9]
          Length = 365

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/321 (14%), Positives = 104/321 (32%), Gaps = 20/321 (6%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
             K  +S S  +  + +  +L+I  +V  +SY           ++NG  IT+  +   + 
Sbjct: 28  KEKPKSSGSGALGWVVSAALLVILILVATLSYAGDDKGEN-VASVNGVAITEKQLYDALL 86

Query: 62  LLKL--QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
           L+K   Q    ++ ++ + +LI   L  QE++K G+      ++       +  GL  E 
Sbjct: 87  LIKGGGQNGQQKMSEVTLDDLINVELMNQELQKQGLVVAEADIDKELDALKKAYGLDDEK 146

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
               L +           L         ++     K    + +I     + K        
Sbjct: 147 LKQTLAQS----GMTVADLRPDLEKQAKLRKLLSSKATVTDKDIQDYYDQNKESFSTPEQ 202

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLL 238
           +R     +   +  +            +            ++ +       + G   Y  
Sbjct: 203 VRASHILVKTKEEADAI---------LKQLKDGADFATIAKEKSLDTGTKDAGGDLNYFG 253

Query: 239 ESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPT 295
           +  + P F+    +     T+ P  +  G   I + D +          K  +      +
Sbjct: 254 KGQMDPAFEKAAFELKVGETSQPVQSAYGFHIIKVTDHKQAASPTFEEKKEDIKNILMMS 313

Query: 296 KIEKHEAEYVKKLRSNAIIHY 316
           KI +    ++++L+S A I  
Sbjct: 314 KINELAQPFIEELKSKAKIEN 334


>gi|23015619|ref|ZP_00055390.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 421

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 99/276 (35%), Gaps = 10/276 (3%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIAL-LKLQKING 70
            +         ++F  VP+ S+ S     RI   +N E+I+  D+  R+ L + +  +  
Sbjct: 1   MLARAAIVLNALLFACVPL-SWASAQDVDRIAAVVNDEIISIRDLDARLKLAITVSGLPD 59

Query: 71  ELEK------IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
            +E         +++++ E ++ QE  +  ++  +  V            +      + L
Sbjct: 60  NIESRRRAVPQVLRKMVDERIQAQEAARLKVSAGTEDVARGLANVENQNRMPPGSLLTSL 119

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            K G+  +  K  +    IW  ++           E EI    + ++    +   +   +
Sbjct: 120 AKAGVDPDAVKDQIRADIIWVKLIMRSLQPTIKVGEDEITERLETIRQQFGQPEFMLAEI 179

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
           F   D+  Q     ++  +   E             +F+      + G   +L  S L  
Sbjct: 180 FLPVDSPRQE-EESKRLGERLIEQLRAGAPFQALARQFSQSGSASNGGVLGWLSPSTLED 238

Query: 245 QFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
           + ++  +  ++   ++   T  G   +A+ DKR  G
Sbjct: 239 EVRDTVMSMNKGQVSSLIRTGSGYAILALIDKRVAG 274



 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/276 (10%), Positives = 79/276 (28%), Gaps = 10/276 (3%)

Query: 44  TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
             +  + IT+     R+  ++ Q    E     +   +    +++E ++ G         
Sbjct: 151 IKVGEDEITE-----RLETIRQQFGQPEFMLAEIFLPVDSPRQEEESKRLGERLIEQLRA 205

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
               Q        +   S+      +  +  +  +    +  +  K              
Sbjct: 206 GAPFQALARQFSQSGSASNGGVLGWLSPSTLEDEVRDTVMSMN--KGQVSSLIRTGSGYA 263

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
                  +           +        +        ++ +         K C +LE   
Sbjct: 264 ILALIDKRVAGETFVGDPLLSIVQVFFPIPPGAPPISQLIEKAAELTAPLKSCPELEDMG 323

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRD--LGG 280
            K++    G+   +  S +    ++L+     N  + P  T   +  + +C + +    G
Sbjct: 324 RKLNSEQSGRRDGVTLSVMPQNLRSLVTNLPINKASPPVSTGNALMVVMVCSRDENATKG 383

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            +  +  +       ++E     Y++ LR  A I +
Sbjct: 384 GLPSRDAMRRMIEDERLELLSKRYLRDLRRAAFIDF 419


>gi|329903502|ref|ZP_08273518.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
           isomerase SurA) [Oxalobacteraceae bacterium IMCC9480]
 gi|327548325|gb|EGF33013.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
           isomerase SurA) [Oxalobacteraceae bacterium IMCC9480]
          Length = 475

 Score =  120 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 99/302 (32%), Gaps = 24/302 (7%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------LEKIAVQELIVETL 85
               +   I   +N +VIT  D++ R+AL++ +             LEK  ++ +IV+  
Sbjct: 58  SEPQVIDSIVAVVNSDVITRLDLNSRVALVETRMKQQGSQLPQRALLEKQILERMIVDRA 117

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
           + Q    SGI  D   ++    + A    LS +DF + L+++G   + F++ +  +    
Sbjct: 118 QLQLAADSGIKIDDVMLDRAMARLAEQNKLSMQDFRNQLEREGTPFSRFREEIREEIAMQ 177

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
            + + +   K    E E+       KN    +         I   +      +  R   A
Sbjct: 178 RIREREVDNKLQITESEVDNYLDAEKNAPQIQPEYNLAQILIRIPENATAEQIAARRARA 237

Query: 206 EESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPY 261
           ++   +             ++  I  +  G+  +     L   F   + + ++   +   
Sbjct: 238 DDVARQLRSGADFAKLAASYSDSIEALKGGELGWRTADRLPQLFVDAVARLNEGELSAVI 297

Query: 262 VTQKGVEYIAICDKRD------------LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
            +  G   + +  KR                +     ++  +             +  L+
Sbjct: 298 KSASGFHILKVAGKRTRSADSSTASAAAPAVQQTRARHILIKVNTIVTAAEALRKLTDLK 357

Query: 310 SN 311
             
Sbjct: 358 QR 359



 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/288 (11%), Positives = 80/288 (27%), Gaps = 18/288 (6%)

Query: 46  INGE-VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           ++ +  IT+ ++   +   K          +A Q LI         + +     ++ V  
Sbjct: 184 VDNKLQITESEVDNYLDAEKNAPQIQPEYNLA-QILIRIPENATAEQIAARRARADDVAR 242

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML---------- 154
                A    L+A    S    +G            Q     V + +             
Sbjct: 243 QLRSGADFAKLAASYSDSIEALKGGELGWRTADRLPQLFVDAVARLNEGELSAVIKSASG 302

Query: 155 ----KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
               K          +          +      +    +  +     ++K     +    
Sbjct: 303 FHILKVAGKRTRSADSSTASAAAPAVQQTRARHILIKVNTIVTAAEALRKLTDLKQRLDN 362

Query: 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEY 269
           +        + +++ +     G   ++   D  P+F+  +        + P  T  G   
Sbjct: 363 KAATFEELAKLYSNDLSASKGGDLGWIYPGDTVPEFERAMNLLKPGEVSAPIETPFGYHL 422

Query: 270 IAICDKRDLGGEIALKA-YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           I + +++        K           K+E+   +++++LR  A + Y
Sbjct: 423 IEVIERKSQDVSQERKRLSARQALRERKLEEATQDWIRQLRDRAYVEY 470


>gi|21675072|ref|NP_663137.1| peptidyl-prolyl cis-trans isomerase SurA [Chlorobium tepidum TLS]
 gi|21648311|gb|AAM73479.1| peptidyl-prolyl cis-trans isomerase SurA [Chlorobium tepidum TLS]
          Length = 438

 Score =  120 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/310 (13%), Positives = 101/310 (32%), Gaps = 15/310 (4%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN---- 69
           K+L      ++  +       +     RI   +  E+I   D++++  +L LQ       
Sbjct: 3   KVLFAVLAALMIAMNGFADAAASTGLDRIVAIVGNEIILASDVNEQELMLHLQYPETRKD 62

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
            +L K  ++ +I + +   + +   +  D  +V+        +        S+   + G+
Sbjct: 63  PQLRKRILENMINQKIILTKAKIDTVKVDEKSVDDQAAARYSSLRAGFPSVSAMESRFGM 122

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLK-----YGNLEMEIPANKQKMKNITVREYLIRTVL 184
             N  KQ++        +++               E     N++K       E +  + +
Sbjct: 123 PVNRLKQHIREDIRDQQMIEAFRRKNFHEVTVSYDETMAFYNQEKGALPEAPETVSVSQI 182

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLH 243
             +P      +     +IK  ++             +++         G   +  + +L 
Sbjct: 183 IKMPLVSEAARQAALDKIKAVQQQLEAGGSFATLAREYSDDPGSREKGGDLGFTRKGELV 242

Query: 244 PQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK-HE 301
           P F+           +    T+ G   I + DK    G+     ++ A    +K +    
Sbjct: 243 PSFEEAASVLKPGQISGIVETRFGYHIIQLIDK---EGDRIHTRHILALFDRSKTDIPAT 299

Query: 302 AEYVKKLRSN 311
              +K +R +
Sbjct: 300 IALLKSIRKD 309



 Score = 37.0 bits (83), Expect = 4.2,   Method: Composition-based stats.
 Identities = 9/160 (5%), Positives = 37/160 (23%), Gaps = 20/160 (12%)

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
            +  ++ +        R +L     +K      +       ++            +K++ 
Sbjct: 267 YHIIQLIDKEGDRIHTRHILALFDRSKTDIPATIALLKSIRKDVLSGKATFAEMAKKYSD 326

Query: 225 KIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-----------NNTTNP--YVTQKG---VE 268
                + G    +     +P  +    +              + + P    + K      
Sbjct: 327 DPASATNG--GLITSGSGNPDLEVATLRPDLRKIIDGLKSKGDISQPEKIESDKSAPFYA 384

Query: 269 YIAICDKRDLGGEIALKA--YLSAQNTPTKIEKHEAEYVK 306
              +  +              +       K ++    +++
Sbjct: 385 LFMLNSRTPAHVLTPEHDFAQIQELALNHKSQELFNAWIE 424


>gi|108810078|ref|YP_653994.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis Antiqua]
 gi|167401555|ref|ZP_02307049.1| chaperone SurA [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|121956548|sp|Q1C0H3|SURA_YERPA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|108781991|gb|ABG16049.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
           isomerase) [Yersinia pestis Antiqua]
 gi|167048937|gb|EDR60345.1| chaperone SurA [Yersinia pestis biovar Antiqua str. UG05-0454]
          Length = 434

 Score =  120 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 102/296 (34%), Gaps = 16/296 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   I    ++ +     ++   ++  V+   DI   +  +K+              L
Sbjct: 7   LILGLVICANTAFAAPQEVDKVAAVVDNGVVLQSDIDGLLQSVKMNAQQSGLQVPDDSTL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ ++ Q  +K GIT     ++      A    ++     S L   G+  +
Sbjct: 67  RHQILERLIMDNIQLQMAKKMGITITDQALDKAIADIAAQNRMTLAQMRSRLAADGLSYD 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            +++ +  + +  +V  N+   +   L  E+ +  ++M N    +  +      IP  + 
Sbjct: 127 TYREQIRKEMLTSEVRNNEVRRRITILPQEVESLAKQMGNQVSGDTELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
             Q  V +    A +    +    +        ++    +  G+  +    +L   F + 
Sbjct: 187 PTQQQVDQAEDLANKLVADIKGGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAER 246

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKH 300
           L    +     P  +  G   + + D R     +        ++  + +P   ++ 
Sbjct: 247 LQSAHKGEIVGPIRSGVGFHILKVNDMRGADQTISVTEVNARHILLKPSPMMTDEQ 302



 Score = 80.9 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 54/168 (32%), Gaps = 4/168 (2%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                G   +++   +   + I+V E   R +L          Q   +     AE    +
Sbjct: 259 IRSGVGFHILKVNDMRGADQTISVTEVNARHILLKPSPMMTDEQARAKLEAAAAEIKSGK 318

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEY 269
                   ++ +      +  G+  +       P F++  +K  +   + P  +  G   
Sbjct: 319 -TSFATIAKEISQDPGSAMQGGELGWASPDIYDPAFRDALMKLKKGEISAPVHSSFGWHL 377

Query: 270 IAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           I + D R +   + A K          K  +    ++++ R+ A +  
Sbjct: 378 IQLVDTRQVDKTDAAQKERAYRMLFNRKFAEEAQTWMQEQRAAAYVKI 425


>gi|103486961|ref|YP_616522.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingopyxis
           alaskensis RB2256]
 gi|98977038|gb|ABF53189.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingopyxis
           alaskensis RB2256]
          Length = 446

 Score =  120 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 95/257 (36%), Gaps = 11/257 (4%)

Query: 44  TTINGEVITDGDISKRIALLKLQKIN--------GELEKIAVQELIVETLKKQEIEKSGI 95
            T+NGE+IT  DI +R+AL+++   N          L       LI E L+ QE   + I
Sbjct: 57  ATVNGEIITATDIEQRMALIRIANNNVELPPEEEQRLRNQVFSNLIDEKLQIQEARAADI 116

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
           T D N VN  F + A     + E F+++L  +G      KQ +  +  W  ++  +    
Sbjct: 117 TIDENVVNEQFARLAARFKQTPEQFAAYLASKGSSAAAVKQQIRGEFAWDRLLSRNIQST 176

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
                 E+    ++M+    ++      ++        N   V +  +   ++       
Sbjct: 177 TNVSTEEVDLIVKQMEAAKGQDEFHLGEIYLSATP--DNIAAVTENARKIIQALQAGGSF 234

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICD 274
                +F+     V  G   ++  + L     +  ++        P     G+  + + D
Sbjct: 235 AAYARQFSEASTAVVGGDLGWVKGAQLPASMAEAAMQMQPGQLVGPIEVPGGISIMLLID 294

Query: 275 KRDLGGEIALKAYLSAQ 291
           +R +       A LS +
Sbjct: 295 RRQVLTADPRDAILSLK 311



 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 244 PQFQNLLKKSQNNTTNPYVTQK-GVEYIAICDKR-DLGGEIALKAYLSAQNTPTKIEKHE 301
           P    L+      TT P+     G+  + +C +             +  +    K+ K  
Sbjct: 371 PLQATLVDLQVGQTTQPFGAANEGISVLVLCGRDMPETATAPNLEQIEQKLLEEKVNKRA 430

Query: 302 AEYVKKLRSNAIIHY 316
             Y++ LR +A+I Y
Sbjct: 431 QRYLRDLRRDAVIEY 445


>gi|254476741|ref|ZP_05090127.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ruegeria sp. R11]
 gi|214030984|gb|EEB71819.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ruegeria sp. R11]
          Length = 283

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 89/304 (29%), Gaps = 51/304 (16%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN---GEL 72
             +   L     +P+ +  +   +  I  T+NGE IT G +    A L  Q        L
Sbjct: 7   FLSGLALATALTLPLQATAAP-HADTIVATVNGEEITIGHMIIARATLPQQYQQLPDDVL 65

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               + +LI +T  K                                      +      
Sbjct: 66  FDAILDQLIQQTALK---------------------------------QQLNGEVPKYVE 92

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
              +  +   +  DV++          E+     +Q        E+    +L    ++  
Sbjct: 93  LSLENESRSLLAADVIEKVMENAATEEEVRAAYEEQYSDGNGGDEFNASHILVESEEDAE 152

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
           + +  +++                    + ++     + G+  +  +  + P+F+  +  
Sbjct: 153 EIRAELEE-----------GADFATTARERSTGPSGPNGGELGWFTKGRMVPEFEEAVIA 201

Query: 253 -SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            S    + P  TQ G   I + ++R         A +  Q      E+   E V+ L + 
Sbjct: 202 LSAGEISAPVQTQFGWHVIKLNERRKSAA--PEFAEIRDQLAAQIREEAVEESVRTLTTE 259

Query: 312 AIIH 315
           A I 
Sbjct: 260 AEIE 263


>gi|311696171|gb|ADP99044.1| survival protein surA [marine bacterium HP15]
          Length = 446

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 105/293 (35%), Gaps = 20/293 (6%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQK--------INGELEKIAVQELIVETLKKQEIE 91
            ++   ++ +VI   ++  RI  +  +             LE+  + +LI E+++ Q  +
Sbjct: 32  DQVVAIVDEDVILQTELEARINTITSRLGAQGTALPPRQVLEERVLDQLITESIQMQMAD 91

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
           ++G+    N +N      A   G+S   F + L+ +G+  N  ++ +  + +   V +  
Sbjct: 92  RAGMRISDNELNETMANIAERNGMSLPQFENQLEAEGVTYNQAREQIRKEMLTSRVQQRQ 151

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
              +    + E+    + ++         R     +  +   ++  V    + AE  R  
Sbjct: 152 VGNRVRVTDREVENYLESLEARGGNNAQYRLAYIFVSVDDPSDEAEVDAAREKAERLRSE 211

Query: 212 LPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGV 267
           +    +        +   + +  G   +  E  L      ++ +      ++      G 
Sbjct: 212 IANGRDFREVAVAESDASNALEGGDMGWRAEGQLPSLVAPVVPELPVGEPSDVLENNSGF 271

Query: 268 EYIAICDKRDLGGEIALKAY-LSAQN-------TPTKIEKHEAEYVKKLRSNA 312
             + + DKR    +  ++ + +           T ++ E    +  ++L++ A
Sbjct: 272 HLVMVMDKRGGEQQQMIQQHRVRHILVRPSEATTDSQAETVIRDLYQQLQNGA 324



 Score = 98.6 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/285 (8%), Positives = 73/285 (25%), Gaps = 20/285 (7%)

Query: 46  INGEV-ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           +   V +TD ++   +  L+ +  N    ++A            +        D+     
Sbjct: 152 VGNRVRVTDREVENYLESLEARGGNNAQYRLA------YIFVSVDDPSDEAEVDAAREKA 205

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
             ++     G    + +                   +   P +V             ++ 
Sbjct: 206 ERLRSEIANGRDFREVAVAESDASNALEGGDMGWRAEGQLPSLVAPVVPELPVGEPSDVL 265

Query: 165 ANKQKMK----------NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
            N                        R     +  ++       +  I+D  +       
Sbjct: 266 ENNSGFHLVMVMDKRGGEQQQMIQQHRVRHILVRPSEATTDSQAETVIRDLYQQLQNGAS 325

Query: 215 DCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAI 272
                 +++         G   ++    + P F+  +          P+ +Q G   + +
Sbjct: 326 FSALAREYSDDPVSGSDGGNLGWVSPGQMVPAFEQAMLDADIGELRGPFRSQFGWHILQV 385

Query: 273 CDKRDLGGEIALKA-YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            ++R       ++           K E     +++++R  A + +
Sbjct: 386 QERRQKDISGDVRDAEARQAIYRRKFETELQNWLQEIRDEAFVEF 430


>gi|126664692|ref|ZP_01735676.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter sp. ELB17]
 gi|126631018|gb|EBA01632.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter sp. ELB17]
          Length = 481

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 102/297 (34%), Gaps = 20/297 (6%)

Query: 37  AMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------LEKIAVQELIVETLKKQ 88
            +  ++   ++ +VI   ++  RI  +  +  + E        L++  + +LI E+++ Q
Sbjct: 60  QLLDQVVAIVDDDVILATELDARINSIVTRLQSQETTLPPRSLLQERVLDQLITESVQLQ 119

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
              K G+    N +N   V  A   G+S E F   L  +G+     ++ +  + +   V 
Sbjct: 120 MAGKMGMRISDNELNETMVSIAGRNGMSLEQFEQQLANEGVSYRDAREQIRNELLTSRVQ 179

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
           +     +    + E+   +Q  +         R     I      +   VQ     AE  
Sbjct: 180 QRQVGSRIRVTDREVENYQQAQQAGGGNTAEYRLAYIFIETEDPSSDASVQTARSKAEAL 239

Query: 209 RLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS-QNNTTNPYVTQ 264
           R ++ +  +        +   + +  G   + +ES L      ++        +      
Sbjct: 240 RQQIVEGRDFRAVAVAESDASNALEGGDMGWRVESQLPSLVAPVVPDLVVGQPSEVLQNS 299

Query: 265 KGVEYIAICDKR----DLGGEIALKAYLS----AQNTPTKIEKHEAEYVKKLRSNAI 313
            G   + + ++R        +     ++        T  + E    +  +KL++ A 
Sbjct: 300 SGFHLVMVMEQRGGEQQKLVQQNRVRHILVQPSDAITEAEAEDKVRDLFEKLQNGAD 356



 Score = 97.1 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 15/157 (9%), Positives = 50/157 (31%), Gaps = 3/157 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +   +Q+           R     +  +    +   + +++D  E            +  
Sbjct: 305 VMVMEQRGGEQQKLVQQNRVRHILVQPSDAITEAEAEDKVRDLFEKLQNGADFAELAKAE 364

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG- 279
           +         G   ++    + P+F+  ++ +       P  +Q G   + + ++R    
Sbjct: 365 SDDTVSGSDGGNLGWVNPGQMVPEFEQAMQNATVGQIEGPVRSQFGWHLLQVQERRQKDM 424

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            +   ++         K E     +++++R  A + +
Sbjct: 425 SDEFRESETRQTLYQRKFENELQNWLREIRDEAFVEF 461


>gi|124265396|ref|YP_001019400.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylibium
           petroleiphilum PM1]
 gi|124258171|gb|ABM93165.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylibium
           petroleiphilum PM1]
          Length = 437

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 39/300 (13%), Positives = 93/300 (31%), Gaps = 13/300 (4%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK--------LQKINGELEKIA 76
           F    +        +  I   ++ E++T+ ++ +R+A L+            + EL +  
Sbjct: 22  FVANAVAQPSPVRSADYIVAIVDRELVTNAEVQQRLAALRREAAQSGQALPPDDELRRRM 81

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           +  LI E  +     +SG+  D   ++      A    ++       L + GI  + F+ 
Sbjct: 82  LDTLIDERAQLSAARESGVRIDEAELDRTVGNVAAQNRITLAQLRERLQRDGIEFSRFRS 141

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
            L  Q +   V + +   +    + E+        +           L            
Sbjct: 142 NLRDQLLLERVREREVQSRIKISDSEVETLLASRASGVAPPQFNVAQLLIGVPEGAGEAE 201

Query: 197 FVQKRI-KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN 255
             Q+R+  +    R R  +D  +L    S       G         L   F + ++  + 
Sbjct: 202 LAQRRVLAEQALQRARGGEDFARLVNELSTGSKEQGGALGLRTLDRLPDLFADAVRDLRG 261

Query: 256 N--TTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
                    +  G   + + ++RD G         ++  + +    +      + + +  
Sbjct: 262 GAIVPQVLQSGAGFHVLKVVERRDGGMMVPQTRARHILLRTSAQLTQSAAVARLAEFKQQ 321



 Score = 97.4 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 44/122 (36%), Gaps = 2/122 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS-Q 254
             V +  +  ++             + +        G+  +       P+F+  +K    
Sbjct: 310 AAVARLAEFKQQVDSGKASFAQLARENSEDGSAAQGGELGWASPGQFVPEFEEAMKALGI 369

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAI 313
           N  ++P V++ GV  I + ++R +  +   +  +        K E    E+ + +R+ A 
Sbjct: 370 NQVSDPVVSRFGVHLIQVLERRSVPVDRKQQREIARNVLREQKFESAYQEWARDVRARAY 429

Query: 314 IH 315
           + 
Sbjct: 430 VE 431


>gi|22127555|ref|NP_670978.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis KIM 10]
 gi|45443417|ref|NP_994956.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51594986|ref|YP_069177.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia
           pseudotuberculosis IP 32953]
 gi|108810533|ref|YP_646300.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis Nepal516]
 gi|145600395|ref|YP_001164471.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis Pestoides
           F]
 gi|150260469|ref|ZP_01917197.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
           isomerase) [Yersinia pestis CA88-4125]
 gi|153949109|ref|YP_001402397.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia
           pseudotuberculosis IP 31758]
 gi|165928093|ref|ZP_02223925.1| chaperone SurA [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165937810|ref|ZP_02226371.1| chaperone SurA [Yersinia pestis biovar Orientalis str. IP275]
 gi|166008803|ref|ZP_02229701.1| chaperone SurA [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166212220|ref|ZP_02238255.1| chaperone SurA [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167422012|ref|ZP_02313765.1| chaperone SurA [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167426071|ref|ZP_02317824.1| chaperone SurA [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167470553|ref|ZP_02335257.1| chaperone SurA [Yersinia pestis FV-1]
 gi|170025786|ref|YP_001722291.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia
           pseudotuberculosis YPIII]
 gi|186893987|ref|YP_001871099.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia
           pseudotuberculosis PB1/+]
 gi|218927692|ref|YP_002345567.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis CO92]
 gi|229836923|ref|ZP_04457088.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis
           Pestoides A]
 gi|229840382|ref|ZP_04460541.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229842462|ref|ZP_04462617.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229900721|ref|ZP_04515845.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis
           Nepal516]
 gi|270487908|ref|ZP_06204982.1| PPIC-type PPIASE domain protein [Yersinia pestis KIM D27]
 gi|294502589|ref|YP_003566651.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
           isomerase) [Yersinia pestis Z176003]
 gi|81691900|sp|Q66EQ7|SURA_YERPS RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|121956556|sp|Q7CG87|SURA_YERPE RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|121956562|sp|Q1CMT0|SURA_YERPN RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|21960659|gb|AAM87229.1|AE013971_5 survival protein [Yersinia pestis KIM 10]
 gi|45438286|gb|AAS63833.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
           isomerase) [Yersinia pestis biovar Microtus str. 91001]
 gi|51588268|emb|CAH19875.1| peptidyl-prolyl cis-trans isomerase, survival protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108774181|gb|ABG16700.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
           isomerase) [Yersinia pestis Nepal516]
 gi|115346303|emb|CAL19174.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
           isomerase) [Yersinia pestis CO92]
 gi|145212091|gb|ABP41498.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
           isomerase) [Yersinia pestis Pestoides F]
 gi|149289877|gb|EDM39954.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
           isomerase) [Yersinia pestis CA88-4125]
 gi|152960604|gb|ABS48065.1| chaperone SurA [Yersinia pseudotuberculosis IP 31758]
 gi|165914222|gb|EDR32838.1| chaperone SurA [Yersinia pestis biovar Orientalis str. IP275]
 gi|165919954|gb|EDR37255.1| chaperone SurA [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165992142|gb|EDR44443.1| chaperone SurA [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166206966|gb|EDR51446.1| chaperone SurA [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960149|gb|EDR56170.1| chaperone SurA [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167054994|gb|EDR64794.1| chaperone SurA [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|169752320|gb|ACA69838.1| SurA domain [Yersinia pseudotuberculosis YPIII]
 gi|186697013|gb|ACC87642.1| SurA domain protein [Yersinia pseudotuberculosis PB1/+]
 gi|229682060|gb|EEO78152.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis
           Nepal516]
 gi|229690772|gb|EEO82826.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229696748|gb|EEO86795.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229705866|gb|EEO91875.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis
           Pestoides A]
 gi|262360619|gb|ACY57340.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
           isomerase) [Yersinia pestis D106004]
 gi|262364565|gb|ACY61122.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
           isomerase) [Yersinia pestis D182038]
 gi|270336412|gb|EFA47189.1| PPIC-type PPIASE domain protein [Yersinia pestis KIM D27]
 gi|294353048|gb|ADE63389.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
           isomerase) [Yersinia pestis Z176003]
 gi|320016865|gb|ADW00437.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 434

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 102/296 (34%), Gaps = 16/296 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--------EL 72
           +++   I    ++ +     ++   ++  V+   DI   +  +K+              L
Sbjct: 7   LILGLVICANTAFAAPQEVDKVAAVVDNGVVLQSDIDGLLQSVKMNAQQSGQQVPDDSTL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ ++ Q  +K GIT     ++      A    ++     S L   G+  +
Sbjct: 67  RHQILERLIMDNIQLQMAKKMGITITDQALDKAIADIAAQNRMTLAQMRSRLAADGLSYD 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            +++ +  + +  +V  N+   +   L  E+ +  ++M N    +  +      IP  + 
Sbjct: 127 TYREQIRKEMLTSEVRNNEVRRRITILPQEVESLAKQMGNQVSGDTELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
             Q  V +    A +    +    +        ++    +  G+  +    +L   F   
Sbjct: 187 PTQQQVDQAEDLANKLVADIKGGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAER 246

Query: 250 LKKSQ-NNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKH 300
           L+ +       P  +  G   + + D R     +        ++  + +P   ++ 
Sbjct: 247 LQSAHKGEIVGPIRSGVGFHILKVNDMRGADQTISVTEVNARHILLKPSPMMTDEQ 302



 Score = 80.5 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 54/168 (32%), Gaps = 4/168 (2%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                G   +++   +   + I+V E   R +L          Q   +     AE    +
Sbjct: 259 IRSGVGFHILKVNDMRGADQTISVTEVNARHILLKPSPMMTDEQARAKLEAAAAEIKSGK 318

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEY 269
                   ++ +      +  G+  +       P F++  +K  +   + P  +  G   
Sbjct: 319 -TSFATIAKEISQDPGSAMQGGELGWASPDIYDPAFRDALMKLKKGEISAPVHSSFGWHL 377

Query: 270 IAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           I + D R +   + A K          K  +    ++++ R+ A +  
Sbjct: 378 IQLVDTRQVDKTDAAQKERAYRMLFNRKFAEEAQTWMQEQRAAAYVKI 425


>gi|330863030|emb|CBX73162.1| chaperone surA [Yersinia enterocolitica W22703]
          Length = 424

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/292 (12%), Positives = 103/292 (35%), Gaps = 16/292 (5%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--------ELEKIA 76
             +    ++ +     ++   ++  V+   D+   +  +KL              L    
Sbjct: 1   MVVCANTAFAAPQEVDKVAAVVDNGVVLQSDVDGLLQSVKLNAQQAGQQVPDDATLRHQI 60

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           ++ LI++ ++ Q  +K GIT     ++      A    ++     S L   G+  + +++
Sbjct: 61  LERLIMDNIQLQMAKKMGITISDEALDKAIADIAAQNRMTPAQMRSRLAADGLNYDTYRE 120

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
            +  + +  +V  N+   +   L  E+ +  +++ N T  +  +      IP  +  +Q 
Sbjct: 121 QIRKEMLTSEVRNNEVRRRITILPQEVESLAKQIGNQTSGDAELNLSHILIPLPENPSQQ 180

Query: 197 FVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKK 252
            V +    A++    +    +        ++    +  G+  +    +L   F + L   
Sbjct: 181 QVDQAEDLAKKLVSDIKGGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAERLQSA 240

Query: 253 SQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKH 300
           S+ +   P  +  G   + + D R     +        ++  + +P   +  
Sbjct: 241 SKGDVVGPIRSGVGFHILKVNDIRGTDKTISVTEVHARHILLKPSPVMTDDQ 292



 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 54/168 (32%), Gaps = 4/168 (2%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                G   +++   +   K I+V E   R +L         +Q   +     A+    +
Sbjct: 249 IRSGVGFHILKVNDIRGTDKTISVTEVHARHILLKPSPVMTDDQARAKLTAAAADIKSGK 308

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEY 269
                   ++ +      +  G   +       P F++  +K  +   + P  +  G   
Sbjct: 309 ANF-ATIAKEISQDPGSAMQGGDLGWASPDIYDPAFRDALMKLQKGEISAPVHSSFGWHL 367

Query: 270 IAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           I + D R +   + A K          K  +    ++++ R+ A +  
Sbjct: 368 IQVVDTRQVDKTDAAQKDRAYRMLFSRKFAEEAQTWMQEQRAAAYVKI 415


>gi|315500015|ref|YP_004088818.1| ppic-type peptidyl-prolyl cis-trans isomerase [Asticcacaulis
           excentricus CB 48]
 gi|315418027|gb|ADU14667.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Asticcacaulis
           excentricus CB 48]
          Length = 423

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 105/263 (39%), Gaps = 8/263 (3%)

Query: 31  VSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL-------QKINGELEKIAVQELIVE 83
            + ++  +   +   +N ++I+  D+ +R+ LL +       Q+     ++ A++ LI E
Sbjct: 32  PAAQARPLGEGVVALVNDKLISSYDLKQRMLLLIITSGVQVTQQNYAAFQQQALRALIDE 91

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            L+  E +   +      ++      A+ +GLS +   + L + GI     +  +  +  
Sbjct: 92  HLQLAEADHFKLNVSDEEIDEEIANMAQQSGLSKDQLLAELKRAGIEAQTLRDQIKAEIA 151

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
           W  +V   F  K    + ++ A   K+   + +   +   +   P+     +       +
Sbjct: 152 WGQLVNGRFRPKARVGKDQVDAFMTKLTEDSQKPQYLVAEILIDPEVAGGQKEAEAGAQQ 211

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYV 262
             ++    +    +   +F++     + G A +L+   + P+ + +    +    T P V
Sbjct: 212 LFDQIAQGVAPFQSVARQFSNAPSAANGGDAGWLVSGTIDPKIETVLKGMNPGQMTRPIV 271

Query: 263 TQKGVEYIAICDKRDLGGEIALK 285
           T +GV    + +K++   +  ++
Sbjct: 272 TDEGVYIYYLREKKEGKADAKVR 294



 Score = 63.2 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 1/107 (0%)

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVE 268
            R                 VS+    +   SDL P++ +         +T P      + 
Sbjct: 315 FRAKYPTCDALNNEKGNGQVSVADLGFTALSDLKPEYASALQPLKVGQSTEPMKNTMNIN 374

Query: 269 YIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            + +CDK   G ++  +  +  + T  K+      Y++ +R  A I 
Sbjct: 375 VVYVCDKTAAGDDVPSREQVEQRLTQQKVAMLGRRYLRDIRDGATIE 421


>gi|162420091|ref|YP_001605345.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis Angola]
 gi|162352906|gb|ABX86854.1| chaperone SurA [Yersinia pestis Angola]
          Length = 434

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 102/296 (34%), Gaps = 16/296 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--------EL 72
           +++   I    ++ +     ++   ++  V+   DI   +  +K+              L
Sbjct: 7   LILGLVICANTAFAAPQEVDKVAAVVDNGVVLQSDIDGLLQSVKMNAQQSGQQVPDDSTL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ ++ Q  +K GIT     ++      A    ++     S L   G+  +
Sbjct: 67  RHQILERLIMDNIQLQMAKKMGITITDQALDKAIADIAAQNRMTLAQMRSRLAADGLSYD 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            +++ +  + +  +V  N+   +   L  E+ +  ++M N    +  +      IP  + 
Sbjct: 127 TYREQIRKEMLTSEVRNNEVRRRITILPQEVESLAKQMGNQVSGDTELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
             Q  V +    A +    +    +        ++    +  G+  +    +L   F   
Sbjct: 187 PTQQQVDQAEDLANKLVADIKGGADFGKLAIANSADSQALKGGQMGWGKLQELPSLFAER 246

Query: 250 LKKSQ-NNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKH 300
           L+ +       P  +  G   + + D R     +        ++  + +P   ++ 
Sbjct: 247 LQSAHKGEIVGPIRSGVGFHILKVNDMRGADQTISVTEVNARHILLKPSPMMTDEQ 302



 Score = 80.5 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 54/168 (32%), Gaps = 4/168 (2%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                G   +++   +   + I+V E   R +L          Q   +     AE    +
Sbjct: 259 IRSGVGFHILKVNDMRGADQTISVTEVNARHILLKPSPMMTDEQARAKLEAAAAEIKSGK 318

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEY 269
                   ++ +      +  G+  +       P F++  +K  +   + P  +  G   
Sbjct: 319 -TNFATIAKEISQDPGSAMQGGELGWASPDIYDPAFRDALMKLKKGEISAPVHSSFGWHL 377

Query: 270 IAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           I + D R +   + A K          K  +    ++++ R+ A +  
Sbjct: 378 IQLVDTRQVDKTDAAQKERAYRMLFNRKFAEEAQTWMQEQRAAAYVKI 425


>gi|51246936|ref|YP_066820.1| hypothetical protein DP3084 [Desulfotalea psychrophila LSv54]
 gi|50877973|emb|CAG37813.1| hypothetical protein DP3084 [Desulfotalea psychrophila LSv54]
          Length = 333

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 53/333 (15%), Positives = 118/333 (35%), Gaps = 21/333 (6%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
              +   L  F+ L T+Y  L     + ++S     +  ++   +N EVIT  +++   A
Sbjct: 1   MHNLPKLLKKFMSLRTSY--LSCIFTLILLSPLQAQVIDKVVAVVNNEVITLSELNAETA 58

Query: 62  LLK-----------LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
            +K            ++   E  + A+  +I + L  Q+ +++ +      V        
Sbjct: 59  EIKHKITETAPADQQEEAMAEAREGALNSIIDKKLIAQKAKEARVFVSDEEVEGTIAGIQ 118

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
           +   LS E F   L K G+  N ++  +  Q +   V+  D   K    E +I    +K 
Sbjct: 119 KRASLSREQFIEELKKSGLSFNTYQNNIRSQLLQRKVINYDIRSKIVIPESQIREYYEKE 178

Query: 171 KNITVREYLIRTVLFSIPDNKLQ--NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
             I  ++     +      +K +  ++    +  K      ++        EK+++    
Sbjct: 179 YTINAQDGEYYLLQIGFDWDKEEAGSKEKTLQFAKRIHAIAVKGQDFGALAEKYSTLPSA 238

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD-----LGGEI 282
              G   +    D+       +        +N   +  G ++  +               
Sbjct: 239 KDRGDIGFFAIDDMSENMARAISPLKPGEVSNIIESPAGYQFFKVLSGDQNNSISKAPYA 298

Query: 283 ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            +K  + A+    +++K  + +VK+L+ NA I 
Sbjct: 299 TVKEVIQAKLFEIQMQKDFSSWVKELKENAYIQ 331


>gi|256828792|ref|YP_003157520.1| SurA domain-containing protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256577968|gb|ACU89104.1| SurA domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 305

 Score =  119 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 54/305 (17%), Positives = 111/305 (36%), Gaps = 18/305 (5%)

Query: 19  YFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK---- 74
             +      V     ++  +  RI   +NGE+IT  D+ ++I L   Q  +    +    
Sbjct: 8   AVLTFSLFFVLAGLGQAAQLVDRIVAVVNGEIITFQDLQQQIRLSVGQTPDPATAEKIAP 67

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             +  +I + + +QE ++  I    + V+    Q      LS EDF   L  QG+    F
Sbjct: 68  QVLDGMIDDVILRQEAQRLKIEVSDSEVDNEIRQFKARRRLSEEDFERTLRLQGLTPEQF 127

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
           K+          ++      K    + EI A  ++ ++    E ++   +  + D     
Sbjct: 128 KERSREDITKHKMLGYMVRRKVVVTQEEIDAYMEQNRSELTTERIVDVQMLVLVDE---- 183

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI--GKAQYLLESDLHPQFQNLLKK 252
               ++     +            +E+++      +       +   ++  P    L   
Sbjct: 184 ----ERANSLWKSLSEGEVSLEEAVERYSIGPKAENGVMRDVSWRELAE--PWRDGLRNL 237

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
           S    + P++ Q     + + D+RD     + A++  +       K+E+   EY+  LRS
Sbjct: 238 SAGELSKPFLVQDKWVILKLLDRRDGVRQEDAAVEEEVREAIMRPKLEERFKEYMNGLRS 297

Query: 311 NAIIH 315
            AII 
Sbjct: 298 KAIIQ 302


>gi|145636275|ref|ZP_01791944.1| stationary-phase survival protein SurA [Haemophilus influenzae
           PittHH]
 gi|145270440|gb|EDK10374.1| stationary-phase survival protein SurA [Haemophilus influenzae
           PittHH]
          Length = 290

 Score =  119 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 105/294 (35%), Gaps = 19/294 (6%)

Query: 36  WAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGI 95
                R+  T++G  + +  +       +         + A+ ++I + L ++ +++SG+
Sbjct: 2   AQAEERVVATVDGIPVLESQV-------RANMGKKGDRQSAIDKIIDDILVQKAVQESGV 54

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
             D   +++     A   GL+   F   LD QGI  N F+Q +A Q +   V        
Sbjct: 55  KIDPREIDHIVEDTAARNGLTYGQFLDALDYQGISLNTFRQQIANQMVMGAVRNKAIQES 114

Query: 156 YGNLEMEI----------PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
                 E+             K   + +  +EY +R +L  +       Q   Q     +
Sbjct: 115 IDVTREEVVALGQKMLEEAKEKGTAQKVMGKEYEVRHILLKLNPLLNDAQAKKQLAKIRS 174

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQY-LLESDLHPQFQNLLKKSQNNTTNPYVTQ 264
           +    +       L+     +   + G   Y   E+      Q ++K  Q   + P+ T+
Sbjct: 175 DIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPETYAPQFAQTVVKSKQGVISAPFKTE 234

Query: 265 KGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            G   + +   RD              +   T+++    ++VK LR  A I Y+
Sbjct: 235 FGWHILEVTGVRDGDLTAEAYTQKAYERLVNTQLQDATNDWVKALRKRANIQYF 288


>gi|226942107|ref|YP_002797181.1| SurA [Laribacter hongkongensis HLHK9]
 gi|226717034|gb|ACO76172.1| SurA [Laribacter hongkongensis HLHK9]
          Length = 434

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 102/286 (35%), Gaps = 14/286 (4%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGE--------LEKIAVQELIVETLKKQEIE 91
            RI   +N + IT   +  R+   + Q    +        L++  ++ +I E ++ Q   
Sbjct: 34  DRIVAVVNKQAITQQALDTRVREAEAQLTRQKVPLPPAGVLQQQMLERMINEEVQLQYAG 93

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
            +GI  DS  ++    + A    L+ E F + L   GI +  F+  L+ Q I   + + +
Sbjct: 94  NNGIALDSAELDRIMDRLAEQNRLTPEQFRARLKADGINEAAFRADLSRQVILDRLRERE 153

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTV-LFSIPDNKLQNQGFVQKRIKDAEESRL 210
              K    + E+ A  +   +    E+ +  + +        Q     Q+R  DA     
Sbjct: 154 VDSKVNVSDSEVDAVLRSAVSANRTEFRLSHILITLPEQASPQEVAKRQQRASDAAAKLA 213

Query: 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEY 269
                      ++     +S G   +   + L P F   L +     +T    +  G+  
Sbjct: 214 AGAPFAQVAASYSDAQDALSGGDLGWRSATRLPPVFVAALEQLKPGQSTQVLRSANGLHI 273

Query: 270 IAICDKRDLGGEIALK----AYLSAQNTPTKIEKHEAEYVKKLRSN 311
           + +  +R  G    ++     ++  +      +K     + ++R  
Sbjct: 274 LKLEARRSRGDAQMVEQRQVRHILVRANEITSDKDAQTRILQIRDR 319



 Score =  102 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/280 (10%), Positives = 82/280 (29%), Gaps = 19/280 (6%)

Query: 45  TINGEVITDGDISKRIALLKLQKING--------ELEKIAVQELIVETLKKQEIEKSGIT 96
            +N   ++D ++   +                   L + A  + + +  ++     + + 
Sbjct: 157 KVN---VSDSEVDAVLRSAVSANRTEFRLSHILITLPEQASPQEVAKRQQRASDAAAKLA 213

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
             +               LS  D       +                   V+++   L  
Sbjct: 214 AGAPFAQVAASYSDAQDALSGGDLGWRSATRLPPVFVAALEQLKPGQSTQVLRSANGLHI 273

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
                 +    ++ +         +     +  N++ +    Q RI    +         
Sbjct: 274 ------LKLEARRSRGDAQMVEQRQVRHILVRANEITSDKDAQTRILQIRDRIANGMPFA 327

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDK 275
              + ++        G   ++   D+ P+F+           + P  +  G   I +   
Sbjct: 328 EAAKLYSEDGSAPKGGDLGWVNPGDMVPEFERAYLALPVGQLSQPVRSPFGWHLILVDGT 387

Query: 276 RDLG-GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           R    G+   +A +  +    K E+  AE++++LR++A +
Sbjct: 388 RQQDIGDARQRAEIRQELRARKSEQVYAEWLQQLRASAYV 427


>gi|241662025|ref|YP_002980385.1| SurA domain-containing protein [Ralstonia pickettii 12D]
 gi|240864052|gb|ACS61713.1| SurA domain protein [Ralstonia pickettii 12D]
          Length = 500

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 91/304 (29%), Gaps = 21/304 (6%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKRI----ALLKLQKINGELEK----IAVQEL 80
                    +   +   +N +VIT  ++  R        + Q              +++L
Sbjct: 81  TAPGAPRSQLVDEVVAVVNTDVITRRELLNRADLVERTFRAQNRPLPPRADLLGEVLEQL 140

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I+E ++ Q  ++SGI      V+      A+   LS     S L   G+  + ++  L  
Sbjct: 141 ILERVQAQTAKESGIRVSDADVDRAVESVAQRNNLSVPQLKSKLKDAGMTYDKYRDDLRQ 200

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKM-----KNITVREYLIRTVLFSIPDNKLQNQ 195
           + +   + + +   K    + EI     +           +  + + ++          +
Sbjct: 201 EILLARLREREVDSKVQVYDGEIDNYLAQQGGGTAPAGEQQYNVAQILVPVAEGATDAEK 260

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQ 254
              +K+ +   +               +        G+        L   F N ++    
Sbjct: 261 AAARKKAEGLLKQAQGGADFAKLARDNSGAQDAAQGGELGLRPIGRLPAVFANAVVDMKA 320

Query: 255 NNT-TNPYVTQKGVEYIAICDKRDLGGEIALK------AYLSAQNTPTKIEKHEAEYVKK 307
               +    +  G   I + DKR  G  IA K       ++  +  PT         +  
Sbjct: 321 GQVASQVVESPAGYHVIKLLDKRAPGTAIAAKVQQTQVRHILIKTGPTMSADDARRQLVG 380

Query: 308 LRSN 311
           LR  
Sbjct: 381 LRDR 384



 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 20/178 (11%), Positives = 62/178 (34%), Gaps = 2/178 (1%)

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
                 V         G   +++   +     I  +    +     I      +    ++
Sbjct: 317 DMKAGQVASQVVESPAGYHVIKLLDKRAPGTAIAAKVQQTQVRHILIKTGPTMSADDARR 376

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN 259
           ++    +  +      +   +++      + G+  ++    L P+F+  + +    + + 
Sbjct: 377 QLVGLRDRIVHGYDFGDAARRYSQDGSAGAGGELGWVSPGQLVPEFEQAMNQLKPGDVSQ 436

Query: 260 PYVTQKGVEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           P  +Q GV  I +  +R+        + Y  +     K++    +++++LR +A + Y
Sbjct: 437 PVQSQFGVHLIQVEGRREAEVSGDRQRDYARSVIREQKVQAAYEDWLRELRDSAHVEY 494


>gi|59710895|ref|YP_203671.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Vibrio fischeri
           ES114]
 gi|75507097|sp|Q5E863|SURA_VIBF1 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|59478996|gb|AAW84783.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Vibrio fischeri
           ES114]
          Length = 437

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 37/295 (12%), Positives = 100/295 (33%), Gaps = 15/295 (5%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------LEKIAVQELIVETL 85
            +     R+   ++  V+   DI   +  +K+              L +  +++LIV+T+
Sbjct: 22  AAPVELDRVVAIVDEGVVLQSDIDTSLKTVKINAQEKGQPLPDEAVLREQVLEKLIVDTI 81

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
           + Q+ EK GI  D   +       A+   ++          QG+   +F++ +  +    
Sbjct: 82  QSQQAEKMGIRIDDTRLEAALNDIAKENNMTLAQLQQKTAAQGLPYANFREQIRKEIAAS 141

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
           +        +   L  E+ +  Q +   T      +     +       Q   +   K A
Sbjct: 142 EARNAQVRRRINILPQEVESLAQLLAEETQATVQYKISHIQLRVEDGATQADKEALEKQA 201

Query: 206 EESRLRLPKDCNKLE---KFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS-QNNTTNPY 261
           E+   RL +  +       ++     +  G   ++ + ++   F + +    +N+   P+
Sbjct: 202 EDLTERLKQGADFATMAYTYSKGPKALQGGDWGWMRKEEMPTIFADQITGQGKNSIIGPF 261

Query: 262 VTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            +  G   + I D +    +        ++  + +    ++     +  +  +  
Sbjct: 262 RSGVGFHILKIDDVKGLETVAVTEVNARHILIKTSVIMSDEGAQRLLNTIIDDIK 316



 Score = 75.9 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/275 (11%), Positives = 84/275 (30%), Gaps = 11/275 (4%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++     LL  +       KI+  +L VE    Q  +K  +   +  +     Q A
Sbjct: 154 ILPQEVESLAQLLAEETQATVQYKISHIQLRVEDGATQA-DKEALEKQAEDLTERLKQGA 212

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
               ++          QG      ++          +         G     +  +  K+
Sbjct: 213 DFATMAYTYSKGPKALQGGDWGWMRKEEMPTIFADQITGQGKNSIIGPFRSGVGFHILKI 272

Query: 171 KNITV------REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
            ++         E   R +L                     ++ +       +  ++++ 
Sbjct: 273 DDVKGLETVAVTEVNARHILIKTSVIMSDEGAQR-LLNTIIDDIKSGKETFADMAQRYSQ 331

Query: 225 KI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GE 281
                 + G+  +       P+F++ ++       + P+ T  G     + ++R +   +
Sbjct: 332 DPGSAANDGELGFQTPDLYVPEFKHQVETLPVGQISAPFKTVHGWHIAEVLERRQVDRTD 391

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            A+K          K  +    +++++R++A +  
Sbjct: 392 AAMKNKAYRILLNRKFNEEAGAWLQEIRASAYVEI 426


>gi|237746912|ref|ZP_04577392.1| chaperone SurA [Oxalobacter formigenes HOxBLS]
 gi|229378263|gb|EEO28354.1| chaperone SurA [Oxalobacter formigenes HOxBLS]
          Length = 468

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 34/292 (11%), Positives = 96/292 (32%), Gaps = 25/292 (8%)

Query: 47  NGEVITDGDISKRIALLKLQKINGE--------LEKIAVQELIVETLKKQEIEKSGITFD 98
           N +VIT G++++RI +++ Q             L+K  ++ +IVE+ + Q  ++ G+  D
Sbjct: 59  NNDVITMGELNERIQMIESQLQKQNVNLPPRAELQKQVLEHMIVESAQMQLAKEMGLRID 118

Query: 99  SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGN 158
              ++    + A +  ++   F  ++++ G      ++ +  +     +   + + K   
Sbjct: 119 DTQLDRTIARIAESKHMTVPQFQQYIERDGTSFESHREKIRSEITMQRLRDREVVNKIQI 178

Query: 159 LEMEIPAN--KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
            + E+           +  +  L   ++    +   +     ++R +   +         
Sbjct: 179 NDAEVDHLLGADSQMQMPEQVRLGHILIRIPENASPEQIAEKRERAEKVLQILQSGGDFQ 238

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDK 275
                ++     +S G   +     L   F +  +     N T    +  G   + + DK
Sbjct: 239 QNAASYSDADEGLSGGDIGWRSTDRLPKIFADALVGVKPGNITGIIKSPNGFHILKVLDK 298

Query: 276 RDLG--------------GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           R +                +     ++  +             +  L+    
Sbjct: 299 RSMSTGPEPVAGAADGNAVQQIHARHILIKVNQLVSADEAKRKLLDLKQRIQ 350



 Score = 97.1 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 46/139 (33%), Gaps = 2/139 (1%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
               +    +  +      +K +   +  +          + +++       G   ++  
Sbjct: 321 HARHILIKVNQLVSADEAKRKLLDLKQRIQNDSASFEELAKTYSNDTSASRGGDLGWIYP 380

Query: 240 SDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKI 297
            D  P+F+  L        + P  TQ G   I + DK+     +  K           KI
Sbjct: 381 GDTVPEFEKALVSLQPGEISEPVETQFGFHLIQVLDKKTDDVSLERKRIAAKQALRERKI 440

Query: 298 EKHEAEYVKKLRSNAIIHY 316
            +   E++++LR  A + Y
Sbjct: 441 AEATEEWLRQLRDRAYVEY 459


>gi|264680840|ref|YP_003280750.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni CNB-2]
 gi|262211356|gb|ACY35454.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni CNB-2]
          Length = 475

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 99/298 (33%), Gaps = 18/298 (6%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKL--------QKINGELEKIAVQELIVE 83
           + +    +  I   +N E IT+ ++  R+  +               EL +  ++ LIVE
Sbjct: 62  AAQGVRSADYIVAVVNSEPITNNEVRARMERVAQNVTEQGGQLPSQSELARQVLERLIVE 121

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            ++ QE + +GI  D+ TV+      AR          S L  +GI +  F+  +  Q +
Sbjct: 122 RVQLQEAKDTGINIDNMTVDQAVANVARQNNTDKAGLVSRLKAEGISEAQFRSEIRNQML 181

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI-----RTVLFSIPDNKLQNQGFV 198
              V + D   +    E +I    +  K                ++    +         
Sbjct: 182 MQRVRERDVDGRVKVGEADIDRYLKDQKRPGDAAAGAAANLGHILITVPENASPAVVAER 241

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           + + K A E+  + P     + +F+   +    G       SD    F Q +   +    
Sbjct: 242 EAKAKQAAEAARKNPDFIAAVREFSDVPNGQGGGAMGMRPMSDYPELFSQQVGNSAVGAI 301

Query: 258 TNPYVTQKGVEYIAICDKRDLGG----EIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             P+ +  G   + + +K   G           ++         E   A+ ++  +  
Sbjct: 302 VGPFRSGAGFHVLKVLEKSQAGAPVYITQNHARHILLTVGDGMTEAQAAKRLEDYKRR 359



 Score = 99.7 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 58/167 (34%), Gaps = 3/167 (1%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
           F    G   +++    Q    + + +   R +L ++ D   + Q   +           +
Sbjct: 305 FRSGAGFHVLKVLEKSQAGAPVYITQNHARHILLTVGDGMTEAQAAKRLEDYKRRVEAGQ 364

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYI 270
                   ++F+      + G   +       P+F+ +         +NP V++ GV  I
Sbjct: 365 ATFQ-QLAQEFSKDGSARNGGDLGWSSPGQFVPEFERVLDNLQPGQISNPVVSRFGVHLI 423

Query: 271 AICDKRDLGGEIALKAY-LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + ++R        +   +       K E+    ++K+LR  A + Y
Sbjct: 424 QLIERRQEKLTEREQREMVRNVVRERKAEQDYETWLKELRGKAFVEY 470


>gi|300705125|ref|YP_003746728.1| peptidyl-prolyl cis-trans isomerase (ppiase), involved in
           maturation of outer membrane proteins [Ralstonia
           solanacearum CFBP2957]
 gi|299072789|emb|CBJ44144.1| peptidyl-prolyl cis-trans isomerase (PPIase), involved in
           maturation of outer membrane proteins [Ralstonia
           solanacearum CFBP2957]
          Length = 474

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 92/303 (30%), Gaps = 20/303 (6%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKRI----ALLKLQKINGELEK----IAVQEL 80
                    +   +   +N ++IT  ++  R       L+ Q              +++L
Sbjct: 56  TASGAARSQLVDEVVAVVNTDIITRRELLDRADLVERTLQAQNRPMPARADLLGEVLEQL 115

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I+E ++ Q  ++SGI      V+      A+   LS     S L + G+  + +++ L  
Sbjct: 116 ILERVQAQTAKESGIRVSDADVDRAVESVAQRNNLSVPQLKSKLVQSGLAYDKYREDLRQ 175

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPAN-KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
           + +   +   +   K    + EI     Q+    T            +P  +  +     
Sbjct: 176 EILLARLRDREVDSKVQVFDGEIDNFLAQQGGGATGEAQEYNVAQILVPVAEDASAEQKA 235

Query: 200 KRIKDAEESRLRLPKDCNKLE---KFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQN 255
                AE    +     +  +     +S       G+        L  QF N +      
Sbjct: 236 AARGKAENLLKQAQGGADFAKLVRDNSSGPEAAQGGELGLRSIGRLPTQFANAVVDLKPG 295

Query: 256 NTTN-PYVTQKGVEYIAICDKRDLGGEIALK------AYLSAQNTPTKIEKHEAEYVKKL 308
                   +  G   + + DKR  G   + K       ++  +  PT         +  L
Sbjct: 296 QLAGQVIESPAGFHVLKLVDKRAPGTAASAKVAQTQVRHILIKTGPTMSADDARRQLAGL 355

Query: 309 RSN 311
           R  
Sbjct: 356 RDR 358



 Score =  112 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 19/178 (10%), Positives = 61/178 (34%), Gaps = 2/178 (1%)

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
                 +         G   +++   +      + +    +     I      +    ++
Sbjct: 291 DLKPGQLAGQVIESPAGFHVLKLVDKRAPGTAASAKVAQTQVRHILIKTGPTMSADDARR 350

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN 259
           ++    +  +      +   +++      + G+  ++    L P+F+  +        + 
Sbjct: 351 QLAGLRDRIVHGYDFSDAARRYSQDTSASAGGELGWVSPGQLVPEFEQAMNLLKPGEVSQ 410

Query: 260 PYVTQKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           P  +Q GV  I +  +RD    +   + Y  +     K++    +++++LR +A + Y
Sbjct: 411 PVQSQFGVHLIQVEGRRDAEVPVDRQRDYARSVIREQKVQAAYEDWLRQLRDSAHVEY 468


>gi|163797530|ref|ZP_02191481.1| Parvulin-like peptidyl-prolyl isomerase [alpha proteobacterium
           BAL199]
 gi|159177279|gb|EDP61838.1| Parvulin-like peptidyl-prolyl isomerase [alpha proteobacterium
           BAL199]
          Length = 406

 Score =  119 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 92/263 (34%), Gaps = 9/263 (3%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK-------IAVQELIVETLK 86
            +     RI   +N E+++  D+  R+ ++ +       ++         ++ L+ E ++
Sbjct: 7   AAAQEQQRIAAVVNDEILSMRDLRSRLRMVIVSSRLPATDETAQRLAPQVLRSLVDEQIQ 66

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
            QE ++  +      +     +  +   L    F  F+   G+      + L  Q  W  
Sbjct: 67  LQEAKRLNVAVTDQDLARARSEVEQRNNLKPGQFEEFVRSLGVDPETVIRQLKSQVAWTK 126

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           +V+  F       + E+    Q+M+    +    R     +  +   N+  V++  +   
Sbjct: 127 LVRRRFGNDVTISQEEVTDVLQRMEADAGKT-QKRVSEIVLTVDDPANEEQVRQLAERIV 185

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQK 265
           E             +F++  +    G   ++L   + P+  + + K      + P  T  
Sbjct: 186 EQLKAGANFGAVARQFSASANAAVGGDVGWVLAERMAPEIAEAVAKLETGQISAPVRTLF 245

Query: 266 GVEYIAICDKRDLGGEIALKAYL 288
           G   + + D R +     L A +
Sbjct: 246 GYHIVQVADSRVIAAVDPLTATV 268



 Score = 70.9 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/270 (8%), Positives = 75/270 (27%), Gaps = 1/270 (0%)

Query: 47  NGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF 106
           N   I+  +++  +  ++      +     +   + +   ++++ +              
Sbjct: 134 NDVTISQEEVTDVLQRMEADAGKTQKRVSEIVLTVDDPANEEQVRQLAERIVEQLKAGAN 193

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
                    ++ + +   D   +        +A      +  +    ++       +   
Sbjct: 194 FGAVARQFSASANAAVGGDVGWVLAERMAPEIAEAVAKLETGQISAPVRTLFGYHIVQVA 253

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
             ++            +              V+   +   E+     ++C    + A +I
Sbjct: 254 DSRVIAAVDPLTATVDLKQVFLPVPPNAGKDVRPSQQALAEALSGSAQNCTDFVELAKEI 313

Query: 227 HDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK 285
                     +   +L  P  + +       TT       GV  + +C ++     +   
Sbjct: 314 KSPVSPDLGEMKVGELAPPLRERVAGLKVGETTGAVDLPNGVMVVMVCSRQAPPSNLPSP 373

Query: 286 AYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             + +Q    + E     Y++ LR NA + 
Sbjct: 374 EQIRSQLEAQRFEILAQRYLRDLRRNAFVE 403


>gi|299531915|ref|ZP_07045315.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni S44]
 gi|298720090|gb|EFI61047.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni S44]
          Length = 475

 Score =  119 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 99/298 (33%), Gaps = 18/298 (6%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKL--------QKINGELEKIAVQELIVE 83
           + +    +  I   +N E IT+ ++  R+  +               EL +  ++ LIVE
Sbjct: 62  AAQGVRSADYIVAVVNSEPITNNEVRARMERVAQNVTEQGGQLPSQSELARQVLERLIVE 121

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            ++ QE + +GI  D+ TV+      AR          S L  +GI +  F+  +  Q +
Sbjct: 122 RVQLQEAKDTGINIDNMTVDQAVANVARQNNTDKAGLVSRLKAEGISEAQFRSEIRNQML 181

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI-----RTVLFSIPDNKLQNQGFV 198
              V + D   +    E +I    +  K                ++    +         
Sbjct: 182 MQRVRERDVDGRVKVGEADIDRYLKDQKRPGDAAAGAAANLGHILITVPENASPAVVAER 241

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           + + K A E+  + P     + +F+   +    G       SD    F Q +   +    
Sbjct: 242 EAKAKQAAEAARKNPDFIAAVREFSDVPNGQGGGAMGMRPMSDYPELFSQQVGNSAVGAI 301

Query: 258 TNPYVTQKGVEYIAICDKRDLGG----EIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             P+ +  G   + + +K   G           ++         E   A+ ++  +  
Sbjct: 302 VGPFRSGAGFHVLKVLEKSQAGAPVYITQNHARHILLTVGDGMTEAQAAKRLEDYKRR 359



 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 58/167 (34%), Gaps = 3/167 (1%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
           F    G   +++    Q    + + +   R +L ++ D   + Q   +           +
Sbjct: 305 FRSGAGFHVLKVLEKSQAGAPVYITQNHARHILLTVGDGMTEAQAAKRLEDYKRRVEAGQ 364

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYI 270
                   ++F+      + G   +       P+F+ +         +NP V++ GV  I
Sbjct: 365 ATFQ-QLAQEFSKDGSARNGGDLGWSSPGQFVPEFERVLENLQPGQISNPVVSRFGVHLI 423

Query: 271 AICDKRDLGGEIALKAY-LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + ++R        +   +       K E+    ++K+LR  A + Y
Sbjct: 424 QLIERRQEKLTEREQREMVRNVVRERKAEQDYETWLKELRGKAFVEY 470


>gi|114797858|ref|YP_760847.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Hyphomonas neptunium ATCC 15444]
 gi|114738032|gb|ABI76157.1| PPIC-type PPIASE domain protein [Hyphomonas neptunium ATCC 15444]
          Length = 415

 Score =  119 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 95/290 (32%), Gaps = 16/290 (5%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMS------SRIRTTINGEVITDGDISKRIALLKL 65
            ++++          +       + A          I   +N + I+  D+ +R  LL L
Sbjct: 1   MVRVVFLAAAFAAISVFGAPVSPASAQEADRQTLEGIAAIVNDKPISYSDVRQRARLLLL 60

Query: 66  --------QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
                   Q+   ++   A+++LI E L+   + +  +  D   ++      A   G++ 
Sbjct: 61  TIGASQPTQEQVQQITGQALEQLIDEKLQLDRVSEFEVEVDPVEIDAAVQNMASEAGVTG 120

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
           E     L   G+     ++ +  +  W  ++   +  +    E ++     +++  + + 
Sbjct: 121 EVLREQLTSSGVNPASLEEQMRAEIAWNRLMSGLYGNRIRISENQVDDQMSRLRTASQKT 180

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
                 +F    ++      +            +        ++ +S     + G   ++
Sbjct: 181 QYRIGEIFLYAPDEATKTEALTAAESI-ISQLQQGADFRVAAQRISSAPTAAAGGDMGWV 239

Query: 238 LESDLHPQFQNLLKKSQN-NTTNPYVTQKGVEYIAICDKRDLGGEIALKA 286
              D+ P     ++ S       P  T+ G+  I +  KR+    +    
Sbjct: 240 TIEDIDPTIAEAVRNSSGNGLLEPIQTENGIYIILLGGKREPAEPVTRVD 289


>gi|218461597|ref|ZP_03501688.1| probable peptidyl-prolyl cis-trans isomerase protein [Rhizobium
           etli Kim 5]
          Length = 313

 Score =  119 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 77/287 (26%), Positives = 139/287 (48%), Gaps = 10/287 (3%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            +S ++  +NG  IT GD++KR A L+LQ    +  K A ++LI ETLK+QE+ +  ++ 
Sbjct: 28  AASEVQAVVNGTAITSGDVAKRQAFLRLQHTKADA-KTAKEQLIDETLKRQEVARVRMSV 86

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
               V+  F + +    LS E  S  LD+ G+G +HFK ++A+Q  WP VV   +     
Sbjct: 87  SQQDVDASFARFSAGNKLSVEQMSQILDRAGVGVDHFKGFIAVQMSWPRVVNARYGSTSR 146

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
               ++ +   +                     + +      KR  +AE SR + P   +
Sbjct: 147 LSNYDLVSRMMQNNKQKPVTTEYMLQQIIFVIPQAKRAAITGKRKGEAEASRSKFPGC-D 205

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
           + + FA+ + DV++     +L  ++ P ++ L+++++ NTT   VT KGVEY+AIC +R 
Sbjct: 206 QSKVFAATMRDVAVRDLGRMLAPEIPPDWKPLVEQAKGNTTGTRVTDKGVEYLAICSQRQ 265

Query: 278 LGGEIALKAYLSAQNTPTKI--------EKHEAEYVKKLRSNAIIHY 316
           +  + A +     ++              ++  +Y+ +LR  A I Y
Sbjct: 266 VSDDQAAEMVFRQEDLDKSKAGKNGPPENENSKKYLDELRKKAQIAY 312


>gi|197334077|ref|YP_002155047.1| chaperone SurA [Vibrio fischeri MJ11]
 gi|197315567|gb|ACH65014.1| chaperone SurA [Vibrio fischeri MJ11]
          Length = 437

 Score =  119 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 34/295 (11%), Positives = 100/295 (33%), Gaps = 15/295 (5%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------LEKIAVQELIVETL 85
            +     R+   ++  V+   DI   +  +K+              L +  +++LIV+T+
Sbjct: 22  AAPVELDRVVAIVDEGVVLQSDIDTSLKTVKINAQEKGQPLPDEAVLREQVLEKLIVDTI 81

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
           + Q+ EK GI  D   +       A+   ++          QG+   +F++ +  +    
Sbjct: 82  QSQQAEKMGIRIDDTRLEAALNDIAKENNMTLAQLQQKTAAQGLPYANFREQIRKEIAAS 141

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ---NQGFVQKRI 202
           +        +   L  E+ +  Q +   T      +     +         ++  ++K+ 
Sbjct: 142 EARNAQVRRRINILPQEVESLAQLLAEETQATVQYKISHIQLRVEDGATQTDKEALEKQA 201

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS-QNNTTNPY 261
           +D  E   +          ++     +  G   ++ + ++   F + +    +N+   P+
Sbjct: 202 EDLTERLKQGADFATMAYTYSKGPKALQGGDWGWMRKEEMPTIFADQITGQGKNSIIGPF 261

Query: 262 VTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            +  G   + I D +    +        ++  + +    ++     +  +  +  
Sbjct: 262 RSGVGFHILKIDDVKGLETVAVTEVNARHILIKTSVIMSDEGAQRLLNTIIDDIK 316



 Score = 75.9 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/275 (10%), Positives = 84/275 (30%), Gaps = 11/275 (4%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++     LL  +       KI+  +L VE     + +K  +   +  +     Q A
Sbjct: 154 ILPQEVESLAQLLAEETQATVQYKISHIQLRVEDG-ATQTDKEALEKQAEDLTERLKQGA 212

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
               ++          QG      ++          +         G     +  +  K+
Sbjct: 213 DFATMAYTYSKGPKALQGGDWGWMRKEEMPTIFADQITGQGKNSIIGPFRSGVGFHILKI 272

Query: 171 KNITV------REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
            ++         E   R +L                     ++ +       +  ++++ 
Sbjct: 273 DDVKGLETVAVTEVNARHILIKTSVIMSDEGAQR-LLNTIIDDIKSGKETFADMAQRYSQ 331

Query: 225 KI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GE 281
                 + G+  +       P+F++ ++       + P+ T  G     + ++R +   +
Sbjct: 332 DPGSAANDGELGFQTPDLYVPEFKHQVETLPVGQISAPFKTVHGWHIAEVLERRQVDRTD 391

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            A+K          K  +    +++++R++A +  
Sbjct: 392 AAMKNKAYRILLNRKFNEEAGAWLQEIRASAYVEI 426


>gi|150395986|ref|YP_001326453.1| SurA domain-containing protein [Sinorhizobium medicae WSM419]
 gi|150027501|gb|ABR59618.1| SurA domain [Sinorhizobium medicae WSM419]
          Length = 315

 Score =  119 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 84/310 (27%), Positives = 150/310 (48%), Gaps = 7/310 (2%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN 69
           +  +++L+   +     +    +  + A +S +   +NG VIT GD++KR+A L+LQ+ +
Sbjct: 5   NSIVRVLSAIALAGALSLATGTATTATAAASSVEVVVNGTVITSGDVAKRVAFLRLQRQS 64

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
           G   + A Q+L+ E LK+ EI +   +  ++ V+  F + A    LS E     L++ G+
Sbjct: 65  GGAAE-AKQQLVDEVLKRAEIARVQQSVSTDEVDAAFARFASGNKLSPEQLGKILEQAGV 123

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
           G +HFKQY+A+Q  WP VV   +         ++     +                    
Sbjct: 124 GIDHFKQYIAVQMSWPRVVNFRYGNASRLSGGDLVKRMMQGGGNKPVTTEYFLQQVIFVI 183

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
            + +      KR  +A  SR + P   +  + FA+   DVSI     +L   L   ++ L
Sbjct: 184 PESKRGAITAKRQAEANASRSKFPGC-DTSKAFAANYRDVSIRSLGRILAQQLPEDWKPL 242

Query: 250 LKKSQNNT-TNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI----EKHEAEY 304
           ++K+ ++  T   VT+KGVEY+AIC KR +  + A +    A++   K     + + A+Y
Sbjct: 243 VEKAGDSMTTGTRVTEKGVEYLAICKKRQVNDDAAAEIVFRAEDLGKKKSGGEDPNSAKY 302

Query: 305 VKKLRSNAII 314
           +++LRS A I
Sbjct: 303 LEELRSKAQI 312


>gi|240850229|ref|YP_002971622.1| peptidyl-prolyl cis-trans isomerase [Bartonella grahamii as4aup]
 gi|240267352|gb|ACS50940.1| peptidyl-prolyl cis-trans isomerase [Bartonella grahamii as4aup]
          Length = 324

 Score =  119 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 68/325 (20%), Positives = 128/325 (39%), Gaps = 11/325 (3%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIF----CIVPIVSYKSWAMSSRIRTTINGEVITDGDI 56
           M   ++  ++   K +   F +        ++      +    + I  T+NG  IT+ DI
Sbjct: 1   MRKPIY--MNKLKKRVLALFYITSLSVSSLLINGFLIPTVFAQTSIVVTVNGNPITNYDI 58

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            +R+A L+LQ+  G L   A +ELI E LK  EI++  I   ++ V+  F   A    ++
Sbjct: 59  QRRLAFLRLQQKQGNLVAQAKKELIDEKLKNIEIKRRNIEVSNDEVDRAFENFATQNNMT 118

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            +  +  L +  I   HFK Y+  Q  W  +V   +  + G +  +    +         
Sbjct: 119 IDQLNQILIQTEITVQHFKDYIRGQIGWGRLVSARYQAETGMISEQEAVRRILKNGGVKP 178

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
                T+   +       +  + +R +    +     + C      A  I DV+I     
Sbjct: 179 STNEYTLQRIVFVIPAHRRSEIFERRQREASNFRAHFRGCANAHNQARGILDVTIRHLGK 238

Query: 237 LLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP- 294
            LE  L   ++  +  +     T    T  G+E IA+C  + +  +   +   S Q++  
Sbjct: 239 FLEPQLPNAWEQAILATPAGKMTKLQETSDGIEAIAVCKIKRVSDDYVARLIFSLQDSKK 298

Query: 295 ---TKIEKHEAEYVKKLRSNAIIHY 316
               K+E+   +Y+ +LR  A I  
Sbjct: 299 RSPQKLEELSDKYLGELRRVARIQN 323


>gi|328544014|ref|YP_004304123.1| SurA N-terminal domain family protein [polymorphum gilvum
           SL003B-26A1]
 gi|326413758|gb|ADZ70821.1| SurA N-terminal domain family protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 307

 Score =  119 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 125/282 (44%), Gaps = 3/282 (1%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKIN--GELEKIAVQELIVETLKKQEIEKSGI 95
             + I+  +N + IT  DI++R  L+ L +        ++A +EL+ + LK +E ++ GI
Sbjct: 25  AQTSIKVVVNEQAITSYDIAQRARLITLTQRKSGETARRMAQEELVDDVLKLKEAQRIGI 84

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
           +     V+  F   A+   +S  + ++ L + G+  +  +  L  +  W   V   F  +
Sbjct: 85  SVSKGDVDDAFASIAQRVKMSPANLAAALRQSGVDPDTLRARLRAEVAWSRAVGQRFRAQ 144

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
               + ++ A  QK ++      +   +   I     +    ++ + K   +   +    
Sbjct: 145 VKVSDSDVIAALQKSEDKNKNLSIEFELRQVIFVVPQKASSGLKAQRKREADQFRKEFTS 204

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICD 274
           C      A  +++V +    + LE++L P  ++ + K      T P  T +G+E IA+C 
Sbjct: 205 CETGAAQARTLNEVVVRAIGHRLETELPPALRDTIVKTEVGRLTPPEQTSRGLEMIAVCG 264

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           KR++  +IA +  +  +    + E+    Y+++LR  A I Y
Sbjct: 265 KREIQSDIAARTAIEDELRQKEGEQMSRRYLQELRRRATIEY 306


>gi|319786209|ref|YP_004145684.1| SurA domain [Pseudoxanthomonas suwonensis 11-1]
 gi|317464721|gb|ADV26453.1| SurA domain [Pseudoxanthomonas suwonensis 11-1]
          Length = 442

 Score =  119 bits (296), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 37/315 (11%), Positives = 95/315 (30%), Gaps = 21/315 (6%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMS----SRIRTTINGEVITDGDISKRIALLKLQK----- 67
             +        +P+              RI   +  +VI   ++   +  +  Q      
Sbjct: 7   AIFLAASALLSLPVAGVAQAQQQLQPVERIAAIVEEDVILQSELDLALRNVMAQYAGRES 66

Query: 68  ---INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  LE+  ++ L++  L+     + GI      VN      A+  GL+ +     L
Sbjct: 67  QLPPRPVLERQVLERLVLTRLQVARARQQGIRVSEQEVNQAVAMIAQQNGLTLDGLRQRL 126

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
              G+    F++ L  +     + +  F+ +    E EI A   +    + +  L   ++
Sbjct: 127 ASDGLSFEEFRRSLNEEITVQRLRQG-FIQRINVSEGEIDAALAREATGSRQYRLAHILV 185

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE-KFASKIHDVSIGKAQYLLESDLH 243
                   +     Q++++       +   D      +++   + +  G   +    ++ 
Sbjct: 186 ALPDGATAEQITTGQRKVEGILNVINKGEMDFAAAAVRYSDSPNALEGGDLGWRSLDEIP 245

Query: 244 PQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRD------LGGEIALKAYLSAQNTPTK 296
             F   + +        P     G + + + + RD               ++  +    +
Sbjct: 246 SAFAQQILQLQPGEIFGPVRGPSGFQLLRLTEVRDSAQAPAQTVTEYHVRHILVRVNDRQ 305

Query: 297 IEKHEAEYVKKLRSN 311
                   +  LR+ 
Sbjct: 306 DAATARAKIDTLRAR 320



 Score = 89.3 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/271 (10%), Positives = 69/271 (25%), Gaps = 7/271 (2%)

Query: 51  ITDGDISKRIALLKLQKINGELEKI--AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
           +++G+I   +A          L  I  A+ +            K     +          
Sbjct: 159 VSEGEIDAALAREATGSRQYRLAHILVALPDGATAEQITTGQRKVEGILNVINKGEMDFA 218

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD--VVKNDFMLKYGNLEMEIPAN 166
            A      + +     D      +      A Q +      +        G   + +   
Sbjct: 219 AAAVRYSDSPNALEGGDLGWRSLDEIPSAFAQQILQLQPGEIFGPVRGPSGFQLLRLTEV 278

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
           +   +               +  N  Q+    + +I                  + +   
Sbjct: 279 RDSAQAPAQTVTEYHVRHILVRVNDRQDAATARAKIDTLRARIAGGADFQEVAREASEDN 338

Query: 227 H-DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGG-EIA 283
                 G   +       P+F   +        + P+ T  G   I    +R+    +  
Sbjct: 339 STRGQGGDLGWFPADAYGPEFGGQVTALEDGQVSQPFRTDAGWHIIERVARRETDVTDDN 398

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            +A +       K+E+    Y++++R  A +
Sbjct: 399 RRAQIRDTIGRRKLEEEYERYLQEMRGEAYV 429


>gi|187927495|ref|YP_001897982.1| SurA domain [Ralstonia pickettii 12J]
 gi|309779803|ref|ZP_07674558.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Ralstonia sp. 5_7_47FAA]
 gi|187724385|gb|ACD25550.1| SurA domain [Ralstonia pickettii 12J]
 gi|308921380|gb|EFP67022.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Ralstonia sp. 5_7_47FAA]
          Length = 500

 Score =  119 bits (296), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 40/304 (13%), Positives = 90/304 (29%), Gaps = 21/304 (6%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKRI----ALLKLQKINGELEK----IAVQEL 80
                    +   +   +N +VIT  ++  R        + Q              +++L
Sbjct: 81  TAPGAPRSQLVDEVVAVVNTDVITRRELLNRADLVERTFRAQNRPLPPRADLLGEVLEQL 140

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I+E ++ Q  ++SGI      V+      A+   LS     S L   G+  + ++  L  
Sbjct: 141 ILERVQAQTAKESGIRVSDADVDRAVESVAQRNNLSVPQLKSKLKDAGMTYDKYRDDLRQ 200

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKM-----KNITVREYLIRTVLFSIPDNKLQNQ 195
           + +   + + +   K    + EI     +           +  + + ++          +
Sbjct: 201 EILLARLREREVDSKVQVYDGEIDNYLAQQGGGTAPAGEQQYNVAQILVPVAEGATDAEK 260

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQ 254
              +K+ +   +               +        G+        L   F N ++    
Sbjct: 261 AAARKKAEGLLKQAQGGADFAKLARDNSGAQDAAQGGELGLRPIGRLPAVFANAVVDMKA 320

Query: 255 NNT-TNPYVTQKGVEYIAICDKRDLGGEIALK------AYLSAQNTPTKIEKHEAEYVKK 307
               +    +  G   I + +KR     IA K       ++  +  PT         +  
Sbjct: 321 GQVASQVVESPAGYHVIKLLEKRASSTAIAAKVQQTQVRHILIKTGPTMSADDARRQLVG 380

Query: 308 LRSN 311
           LR  
Sbjct: 381 LRDR 384



 Score =  113 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 20/178 (11%), Positives = 62/178 (34%), Gaps = 2/178 (1%)

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
                 V         G   +++   +     I  +    +     I      +    ++
Sbjct: 317 DMKAGQVASQVVESPAGYHVIKLLEKRASSTAIAAKVQQTQVRHILIKTGPTMSADDARR 376

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN 259
           ++    +  +      +   +++      + G+  ++    L P+F+  + +    + + 
Sbjct: 377 QLVGLRDRIVHGYDFGDAARRYSQDGSAGAGGELGWVSPGQLVPEFEQAMNQLKPGDVSQ 436

Query: 260 PYVTQKGVEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           P  +Q GV  I +  +R+        + Y  +     K++    +++++LR +A + Y
Sbjct: 437 PVQSQFGVHLIQVEGRREAEVSGDRERDYARSVIREQKVQAAYEDWLRELRDSAHVEY 494


>gi|296313516|ref|ZP_06863457.1| SurA/PPIASE domain protein [Neisseria polysaccharea ATCC 43768]
 gi|296839936|gb|EFH23874.1| SurA/PPIASE domain protein [Neisseria polysaccharea ATCC 43768]
          Length = 332

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 92/292 (31%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT+  +++ +A  K            EL +  + +L+ ++L  Q  ++
Sbjct: 55  SDGIAAVADNEVITNRRLAEAVAEAKANLPKDAQISESELSRQVLMQLVNQSLVVQAGKR 114

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    Q+     LS                     LA   I   V +   
Sbjct: 115 RSIQASEAEIDAVVAQNPSLKNLSPTQRR---------------ELADNIIAEKVRQQAV 159

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 160 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 219

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
                     +   +++      + G   +  +  + P F+  ++       + P  TQ 
Sbjct: 220 GEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMVPAFEETVRSLKPGQVSAPVRTQF 279

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + R+    +  ++  +       K E+  A+ ++ L S A +  
Sbjct: 280 GWHIIKLNEVREAGTPQERVRNAVRQYIFQQKAERATADLLRDLHSGAYVDI 331


>gi|95930006|ref|ZP_01312746.1| PPIC-type PPIASE domain protein [Desulfuromonas acetoxidans DSM
           684]
 gi|95133975|gb|EAT15634.1| PPIC-type PPIASE domain protein [Desulfuromonas acetoxidans DSM
           684]
          Length = 303

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 103/302 (34%), Gaps = 6/302 (1%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    V        I+        S+I   +N E+IT   + +R+     +      ++ 
Sbjct: 1   MLKKIVFTALLFSLIIPSVWAEQLSKIAAVVNDEIITTRQLEQRLVSRGERSATDAQKRQ 60

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +I E L +Q   + G+    + +        +   +S E     L  QG+  + ++
Sbjct: 61  ELDNMINERLMEQRSREIGLEVSDDDIETAINDVQQQNNISREQLEQALIAQGLSMSGYR 120

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           + L  Q +   ++  +   K      E+    Q+  +   +   +R    + P       
Sbjct: 121 EQLRGQILRYKLMGYEVKSKVDITRQEVRNYYQEHLDQYRQSPRVRLSRLTFPLGDDPT- 179

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
               +        +L   +  +++    S    +  G+    +  +L   F+  +     
Sbjct: 180 --AARENATIALRKLDDGESVDEVLVNMSPRTRIEGGEMGSFVAGELSETFEQAIADLDS 237

Query: 255 NNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
            + T        +  + + ++    +     ++  +  + +  K+++   E+ + LRS +
Sbjct: 238 GDHTPLIPLGDALHILKVEERIPGSVADISTVEEQIRGELSQQKMDQKLQEWRENLRSES 297

Query: 313 II 314
            +
Sbjct: 298 YV 299


>gi|149914655|ref|ZP_01903185.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Roseobacter sp.
           AzwK-3b]
 gi|149811448|gb|EDM71283.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Roseobacter sp.
           AzwK-3b]
          Length = 411

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 109/282 (38%), Gaps = 5/282 (1%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +  F+  L    V+       I +  S          +N + IT  +I +R  +L L + 
Sbjct: 1   MRQFLAALALPAVMATSMSWGIAAPASAQNLFAPVVKVNDQAITGYEIQQRARMLTLFRS 60

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
            G   ++A ++LI E LK      +G+  +   +     + A    ++AE+F   L+  G
Sbjct: 61  PGNPVELAREQLIEERLKVDAARAAGLVLEDADIRVGMEEFASRANMTAEEFIGALEGAG 120

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
           + +  +++++     W ++V+  F  +    + ++   +  +   +    L+  ++  I 
Sbjct: 121 VSEQSYREFVRAGMTWRELVRARFAPRVSVSDADLERARAALTEDSGVRVLLSEIIMPIT 180

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
               +       RI +       +P    + E++++       G+  ++  ++L PQ + 
Sbjct: 181 PQDAEEVQDRAARISE----LDSIPAFSAEAERYSASATAARGGRLDWMSITNLPPQLRP 236

Query: 249 LLKKS-QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS 289
           ++      + ++P   +  V    + D  +        A + 
Sbjct: 237 VILALGPGDVSDPLPIEGAVALFQLRDIEETDTPEPDYAAIE 278



 Score = 43.5 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 26/86 (30%), Gaps = 4/86 (4%)

Query: 233 KAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKG--VEYIAICDKRDL-GGEIALKAYL 288
                   +L         K      +       G  + ++ +C +     GE      L
Sbjct: 322 DRGSYAPDELPQDIAIELAKLDPGEVSTNLTRSNGQTLVFLMLCGRTPALEGEGPSAEQL 381

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNAII 314
           +      +I+     Y+ +LR+ A I
Sbjct: 382 TNLIRNRRIDSFADGYLAQLRAEARI 407


>gi|297569281|ref|YP_003690625.1| SurA domain protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296925196|gb|ADH86006.1| SurA domain protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 326

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 97/291 (33%), Gaps = 14/291 (4%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQ-----------KINGELEKIAVQELIVETLKKQ 88
            R+   +NG++IT  ++   +A +              K   E +   +  +I + L ++
Sbjct: 34  DRVVAEVNGQIITLSELEAEMATIGEDFLRGVPAGERAKARQEAQSQVLSGMIDQILVER 93

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
           + ++ GI      ++    Q   +  LS E+    L++ G     ++Q L  Q +   ++
Sbjct: 94  QAQRRGIFVGEREIDAAMAQIMEDNRLSREELIRELERSGTTLEQYRQTLRTQILQARLL 153

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN-KLQNQGFVQKRIKDAEE 207
             +   +    E  I    ++      ++     +      +   QN+   ++R   A +
Sbjct: 154 NLEVRERIVIPENRIRRYYEEHYADGSQQQGYHLLQMGFAWDGDDQNRAEAKQRATGARD 213

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKG 266
             L          + +      S G      + +L  + +  +   +    T        
Sbjct: 214 RVLTGGSFRQLARELSDLPSATSGGDLGVFEQDELADEMRRHILAMTPGELTPIMEIGGA 273

Query: 267 VEYIAICDKRDLG-GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            ++  +     +      ++  +        +E++   +V  LR +  I  
Sbjct: 274 YQFFKLLAGGGVSRPYEDMREEIREILYQQALEENFERWVSNLREDVQIRI 324


>gi|221135224|ref|ZP_03561527.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Glaciecola sp.
           HTCC2999]
          Length = 431

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/312 (11%), Positives = 107/312 (34%), Gaps = 15/312 (4%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--- 71
           +     ++    +   VS  +     ++   ++  VI + +I++ IA +K          
Sbjct: 1   MKFLGILIGCLWLSVSVSAMAQTELDKVSVIVDQGVILESEINELIATVKESAKKNNQSL 60

Query: 72  -----LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
                L   A++ LI++ L+ Q  E+ GI      +       A+N   + +   + + +
Sbjct: 61  PSDRALRTQAIERLILDNLQMQMAERMGIQVSDPQLEQTIANIAKNQNSTMDQLRAGIAQ 120

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
            G+  + +++ +  + I  +V + +   +      EI +    ++     +   R     
Sbjct: 121 AGLDYDSYRETVRKELITGEVRRANVRRRIYITPQEISSLVALIEEQGNEQAEYRLGHIL 180

Query: 187 IPDNKLQNQGFV---QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
           I          +   ++R +                   +S    +  G   +L  + + 
Sbjct: 181 IGFPPEPTDADITSARERAEKVLNLLNSGSDFAKIAIASSSGPKALDGGDMGWLNINSMP 240

Query: 244 PQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGG---EIALKAYLSAQNTPTKIEK 299
             F  +++  + +    P  +  G   + I + R +     E     ++  + +    E+
Sbjct: 241 TLFAEVVQGKEADELIGPIRSGAGFHILKIQETRGIEVAKLEEINARHILVKPSIILSEQ 300

Query: 300 HEAEYVKKLRSN 311
                +++ ++ 
Sbjct: 301 KVETMLQEFKAQ 312



 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 45/141 (31%), Gaps = 3/141 (2%)

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQY 236
            +    +   P   L  Q       +   +         +  +  +      V  G+  +
Sbjct: 283 EINARHILVKPSIILSEQKVETMLQEFKAQVLEGTADFADLAKAHSEDPGSAVKGGELGF 342

Query: 237 LLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR-DLGGEIALKAYLSAQNTP 294
              S   P F++  +K  ++  + P  +  G   I + D+R D   +   +         
Sbjct: 343 ADPSLYVPAFKDALVKLEKDEISEPIRSVHGWHLIQLIDRRVDDITDRKKQDKAYQLIFN 402

Query: 295 TKIEKHEAEYVKKLRSNAIIH 315
            K  +    +++++R  A I 
Sbjct: 403 RKFAEETDAWLREMREEAFIE 423


>gi|332798185|ref|YP_004459684.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Tepidanaerobacter
           sp. Re1]
 gi|332695920|gb|AEE90377.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Tepidanaerobacter
           sp. Re1]
          Length = 320

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/329 (12%), Positives = 102/329 (31%), Gaps = 34/329 (10%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSS--------RIRTTINGEVITDGDISKRIALLK 64
           ++ +    +L+I  I          + +         +   +N E+I   D  +++  +K
Sbjct: 1   MRTIKISILLLICVIAMAGCQNVEKVETQGKIIDGKEVIAKVNDELILKSDYDRQVLQVK 60

Query: 65  LQKIN--------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
                               E+ +  ++ +I + L  Q+ EK  IT              
Sbjct: 61  SALEANGQDFSTDEGKKVLKEIREKVLESMINDQLILQQAEKDNITLGEKEFKQAISDLE 120

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
           +  G   +    +L++Q +  + F++ +  Q +     K          + E+    +  
Sbjct: 121 QYHG-GKDALDKYLEQQELDRSSFEKLVKEQLVINQF-KEKLTSDIKITDEEVKKFYEDN 178

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDV 229
           K +             + D + + +  + +                   + ++       
Sbjct: 179 KTMFELPAPEIRASHILVDTENEAKKILAEI--------KAGGDFAALAKDYSKDPGSKE 230

Query: 230 SIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
             G   Y  +  + P+F+           ++   T  G   I +  +R        K Y+
Sbjct: 231 LGGDLGYFSKGKMDPEFEKAAFALKPGEISDVVKTTFGYHIIKVTGERTSLSFDDAKDYI 290

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            +    +K E+   +Y+ + +  + I  Y
Sbjct: 291 KSNLENSKKEEEFNKYLDEWKKQSKIEKY 319


>gi|302337922|ref|YP_003803128.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635107|gb|ADK80534.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 357

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 106/342 (30%), Gaps = 43/342 (12%)

Query: 15  LLTTYFVLIIFCIVPI--------VSYKSWAMSSRI------------------RTTING 48
           L  + F++++F              S  +   +  +                     +NG
Sbjct: 8   LFLSLFLIVVFLFPSFMWAGGKKESSEPAPEATESVETTPKERTPIEVASPSDNAAIVNG 67

Query: 49  EVITDGDISKRIALLKL----------QKINGELEKIAVQELIVETLKKQEIEKSGITFD 98
             I      +++++++           ++   EL+   ++ LI + L  QE +  G   D
Sbjct: 68  VAIPLDRYQQQLSVIQQQYLMQGISVPEEQMAELKGQVLESLIDQELLAQEAKGQGYEAD 127

Query: 99  SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGN 158
              V+    Q       S E +   L +QGI +  F   L    +    V + F  +   
Sbjct: 128 QTKVDQQLQQIKGQF-PSEEQYYQALAQQGISEQDFLAELKKSLVVQQFVSDRFASQVAV 186

Query: 159 LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR---LPKD 215
            E +         +  V+   +R         +  +   V      AE +  R     + 
Sbjct: 187 TEEDSKTYYDDNPSYFVQPERVRASHILFSVAEDASDQDVAAAKTKAESALERYKNGEEF 246

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICD 274
            +   + +        G   +   + +   F++          ++P  T+ G   I +  
Sbjct: 247 SDLARELSEGPSASQGGDLGFFGRNQMVKPFEDAAFSMKVGEVSDPVRTKFGFHLIRLTA 306

Query: 275 K--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           +  +       +K  +S      ++ +    ++ + +  + I
Sbjct: 307 RNEKGTLPFDQVKPQISDHLYKLRLGELVKAFLDEQKEKSEI 348


>gi|319765026|ref|YP_004128963.1| sura domain protein [Alicycliphilus denitrificans BC]
 gi|317119587|gb|ADV02076.1| SurA domain protein [Alicycliphilus denitrificans BC]
          Length = 471

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 98/297 (32%), Gaps = 17/297 (5%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--------ELEKIAVQELIVE 83
           +  +   +  I   +N E IT+ ++ +R   +  Q             L K  ++ LI+E
Sbjct: 59  ASPAVRQADYIVAVVNSEPITNNEVRQRAERVAQQLSGQGAAMPPHEVLVKEVLERLILE 118

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            ++ Q  ++ GI  D   VN      AR   +S ++    L   GI    F++ L  Q +
Sbjct: 119 KIQVQLAKEGGIKVDDYAVNQAEQNVARQNDVSVDEMHRRLAADGISKERFREELRNQLL 178

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI----RTVLFSIPDNKLQNQGFVQ 199
              V + D   +    ++E+    Q  +       +       ++        +      
Sbjct: 179 ALRVRERDVESRVRVSDLEVDQYLQDQQKTAGPGKMEINLGHILVKVPEGASPEEVARRA 238

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTT 258
            R ++  +           +++++        G             F   + + +  +  
Sbjct: 239 ARAQEVLDKLRAGGDFGVLVQEYSDVPEGSGGGLLGLRPLDRYPELFVTAVQQAAVGSIV 298

Query: 259 NPYVTQKGVEYIAICDKRDLGGE----IALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            P  +  G   + + D+   G       +   ++  +      E+  AE ++ LR  
Sbjct: 299 GPLRSPAGFHILKVVDRSQGGVPTMAVQSHARHILLRVGSGLSERQAAERLEDLRQR 355



 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 45/139 (32%), Gaps = 2/139 (1%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
               +     + L  +   ++     +              +++        G   +   
Sbjct: 328 HARHILLRVGSGLSERQAAERLEDLRQRVLRGQADFATLAREYSQDGSAKDGGDLGWAGP 387

Query: 240 SDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEI-ALKAYLSAQNTPTKI 297
               P+FQ  L        + P V++ GV  I + ++R+        +  +       K+
Sbjct: 388 GRYVPEFQEALNALRPGEISQPVVSRFGVHLIQLLERREAKLTQREQRDMVRDAVREKKL 447

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           ++    ++++ R+ A + Y
Sbjct: 448 DEAFTTWIQEARARAYVEY 466


>gi|99082756|ref|YP_614910.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ruegeria sp. TM1040]
 gi|99039036|gb|ABF65648.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ruegeria sp. TM1040]
          Length = 283

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/308 (12%), Positives = 96/308 (31%), Gaps = 52/308 (16%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWA--MSSRIRTTINGEVITDGDISKRIALLKLQKIN- 69
           ++   T+   ++F     ++  ++A   ++ +  T+NGE IT G++    A L  Q  + 
Sbjct: 1   MRKGLTFLQGVVFATAFGLAAPAFAELNANTVVATVNGEDITVGNMIVARAKLPAQYQSL 60

Query: 70  --GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
               L K  + +LI +T+ KQ++                                     
Sbjct: 61  PDDLLFKALLDQLIQQTVLKQQLHGDIPE------------------------------- 89

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
                   ++     +  DV++           +    + +   +    E+    +L   
Sbjct: 90  --YVRLSVEHEQRSLLASDVIEAVMEGAQTEDAIRDAYDARYSSDDGGDEFNASHIL--- 144

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
                      ++   + +             ++ ++     + G   +     + P+F+
Sbjct: 145 --------LESEEAALEIKSQLDEGADFAALAKESSTGPSGPNGGALGWFENGRMVPEFE 196

Query: 248 N-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
             +        + P  TQ G   I + D+R    E      +  +      ++   + + 
Sbjct: 197 AAISDMRSGEVSGPVQTQFGWHIIKLNDRR--KLEAPEYEDVRDEIAQELAQQAVEDRIS 254

Query: 307 KLRSNAII 314
           +L + A I
Sbjct: 255 QLTATATI 262


>gi|326386746|ref|ZP_08208367.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208799|gb|EGD59595.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 467

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 80/257 (31%), Gaps = 14/257 (5%)

Query: 44  TTINGEVITDGDISKRIALLKLQK---------INGELEKIAVQELIVETLKKQEIEKSG 94
             +NGE+IT  DI +R+AL+                 L    ++ LI ETL+ QE +  G
Sbjct: 76  AIVNGEIITGTDIDQRLALIINANGGGNKIPAEEQERLRAQVLRNLIDETLQIQEAKGVG 135

Query: 95  ITFDSNTVNYFFVQHARNT-GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
           I  D   VN  F + A+   G +      +L   G      K+ +  +  W  +++ +  
Sbjct: 136 IEIDEEEVNQSFDRVAQQNFGQNTAALEKYLTSIGSSAASLKRQIKGEMAWQRLLRRNVQ 195

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                 + E+       +    +      +         +N+  V        E   +  
Sbjct: 196 PYINVSDSEVRE--MMDRMKAAKGTEEYHIGEIFLSATDENRSQVLANADKIVEQLKKGG 253

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAI 272
                  +F+        G   ++    L  +               P     G   I +
Sbjct: 254 SFTAYARQFSEASTAAVGGDLGWIRLVQLPQELATSATTMGPGQLAGPIALAGGYSIIYV 313

Query: 273 CDKRDLGGEIALKAYLS 289
            DKR +      +  + 
Sbjct: 314 IDKRQVLT-ADARDSIL 329



 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 255 NNTTNPYVT-QKGVEYIAICDKRDLGGEI-ALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
              T P+ + + GV  + +C + D   E       L +Q    ++ K    Y++ LR +A
Sbjct: 403 GEATPPFGSIEDGVRVLMLCGRDDPKVENGPSFEQLQSQIEDDRVNKRAQTYLRDLRRDA 462

Query: 313 IIHY 316
           +I Y
Sbjct: 463 VIEY 466


>gi|27375316|ref|NP_766845.1| hypothetical protein blr0205 [Bradyrhizobium japonicum USDA 110]
 gi|27348452|dbj|BAC45470.1| blr0205 [Bradyrhizobium japonicum USDA 110]
          Length = 323

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/305 (12%), Positives = 83/305 (27%), Gaps = 47/305 (15%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI---SKRIALLKLQKINGE 71
                  L+    + +++    A    +   +NG  I   D+    + +     Q     
Sbjct: 29  RFGLATALVGCLALALIAGPGRAADDPVLAKVNGAEIKKSDVAMAEEELGPSLAQMDPAT 88

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
            ++  +  LI   +  +  E   +                                    
Sbjct: 89  KDENVLSFLIDMKIVSKAAEDKKVADSEEFKKRL-------------------------- 122

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                +   + +   ++ N+         M+    +   +    +E   R +L    D  
Sbjct: 123 ----AFARNRLLMDSLLANEGKAATTPDAMKKVYEEASKQITGEQEVRARHILVETEDEA 178

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLL 250
              +  + K                   +K +        G   +  +  + P+F     
Sbjct: 179 KAVKAELDK-----------GADFAELAKKKSKDPGSADGGDLGFFTKEQMVPEFSAVAF 227

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
                  ++P  +Q G   I + +KR+          + AQ       K +A+YV KLR+
Sbjct: 228 ALEPGKISDPVKSQFGWHIIKVEEKRNRKA--PDFEQVKAQIEQYVTRKAQADYVAKLRT 285

Query: 311 NAIIH 315
            A + 
Sbjct: 286 EAKVE 290


>gi|78224731|ref|YP_386478.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           metallireducens GS-15]
 gi|78195986|gb|ABB33753.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           metallireducens GS-15]
          Length = 323

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/314 (12%), Positives = 92/314 (29%), Gaps = 51/314 (16%)

Query: 13  IKLLTTYFVLIIFCIV-----PIVSYKSWAMSSRIRTTINGEVITDGDISKRIA----LL 63
           + +L+   + + F           +      +  +   +NG+ IT GD  K +      L
Sbjct: 15  LTILSATLLAVPFTGCKGKTETGTATAPAKKAGEVIAEVNGDTITTGDFQKELENLPPYL 74

Query: 64  KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
           K      E +K  +  ++V  L  Q+  K G+    +                       
Sbjct: 75  KPMADTAEGKKELLDTMVVRELILQQARKDGLDKSPDVAAKL------------------ 116

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                       + L  + +    +K     +    + E+    ++ K+       +   
Sbjct: 117 ------------EELKKRVVVEAFLKKKVEEQAKVSDEEMKKFYEENKDKFKTGPQVHAS 164

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
              +               +   +            +K +        G   +  +  + 
Sbjct: 165 HILMKSEDEA---------QKVLKELKEGGNFEELAKKHSIDSAAAKGGDLGWFSKGSMV 215

Query: 244 PQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKH 300
           P+F+ ++    +  T+    T+ G   I +  KR  G      +K  L A   P+K ++ 
Sbjct: 216 PEFEKVVFGLKEGETSGIVKTKFGYHIIKLTGKRPAGIRTFDEVKEQLRAAILPSKQQEV 275

Query: 301 EAEYVKKLRSNAII 314
             +    ++  A +
Sbjct: 276 FQKLKDDIKKGAKV 289


>gi|320105835|ref|YP_004181425.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Terriglobus
           saanensis SP1PR4]
 gi|319924356|gb|ADV81431.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Terriglobus
           saanensis SP1PR4]
          Length = 645

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 92/284 (32%), Gaps = 14/284 (4%)

Query: 47  NGEVITDGDISKRIALLKLQKI--------NGELEKIAVQELIVETLKKQEIEKSGITFD 98
           N ++I+  D+ ++   L+ +            E +K  +++LI + L     ++ GIT D
Sbjct: 87  NDQIISRSDVERQEQQLQAELRQGGAQAGDPAERQKNMLRDLIDQQLLLSRGKELGITGD 146

Query: 99  SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGN 158
           +  +        +N   S ED       QG+    FK  +    I   VV+++       
Sbjct: 147 TELIRRLDDIRKQNHLDSMEDLEKAARAQGVSFEDFKAQIRNSIITSSVVRDEVSRHLQM 206

Query: 159 LEMEIPANKQKMKNITVREYLIRTV---LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
            + +        K+   ++  +R     +    D         Q + ++           
Sbjct: 207 TQADERKYYDAHKDQFAQQEQVRLSEILIPLPADATDAAIAQAQAKAEETAAKIRAGAAF 266

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICD 274
            +  +  +        G   +     L P  +         + T P  T++G   +   +
Sbjct: 267 ADVAKTTSGGPTAAQGGDLGFFKRGGLAPVLEEKTFPLKVGDFTAPIRTRQGFVILQATE 326

Query: 275 KRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            ++        +   +       +++     Y+  LR +A I  
Sbjct: 327 HQEAGVPPLAQVDQQVQEAMYQDQMQPALRAYLTHLREDAYIDI 370


>gi|330827221|ref|YP_004390524.1| chaperone surA [Alicycliphilus denitrificans K601]
 gi|329312593|gb|AEB87008.1| Chaperone surA [Alicycliphilus denitrificans K601]
          Length = 471

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 98/297 (32%), Gaps = 17/297 (5%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--------ELEKIAVQELIVE 83
           +  +   +  I   +N E IT+ ++ +R   +  Q             L K  ++ LI+E
Sbjct: 59  TSPAVRQADYIVAVVNSEPITNNEVRQRAERVAQQLSGQGAAMPPHEVLVKEVLERLILE 118

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            ++ Q  ++ GI  D   VN      AR   +S ++    L   GI    F++ L  Q +
Sbjct: 119 KIQVQLAKEGGIKVDDYAVNQAEQNVARQNDVSVDEMHRRLAADGISKERFREELRNQLL 178

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI----RTVLFSIPDNKLQNQGFVQ 199
              V + D   +    ++E+    Q  +       +       ++        +      
Sbjct: 179 ALRVRERDVESRVRVSDLEVDQYLQDQQKTAGPGKMEINLGHILVKVPEGASPEEVARRA 238

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTT 258
            R ++  +           +++++        G             F   + + +  +  
Sbjct: 239 ARAQEVLDKLRAGGDFGVLVQEYSDVPEGSGGGLLGLRPLDRYPELFVTAVQQAAVGSIV 298

Query: 259 NPYVTQKGVEYIAICDKRDLGGE----IALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            P  +  G   + + D+   G       +   ++  +      E+  AE ++ LR  
Sbjct: 299 GPLRSPAGFHILKVVDRSQGGVPTMAVQSHARHILLRVGSGLSERQAAERLEDLRQR 355



 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 45/139 (32%), Gaps = 2/139 (1%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
               +     + L  +   ++     +              +++        G   +   
Sbjct: 328 HARHILLRVGSGLSERQAAERLEDLRQRVLRGQADFATLAREYSQDGSAKDGGDLGWAGP 387

Query: 240 SDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEI-ALKAYLSAQNTPTKI 297
               P+FQ  L        + P V++ GV  I + ++R+        +  +       K+
Sbjct: 388 GRYVPEFQEALNALRPGEISQPVVSRFGVHLIQLLERREAKLTQREQRDMVRDAVREKKL 447

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           ++    ++++ R+ A + Y
Sbjct: 448 DEAFTTWIQEARARAYVEY 466


>gi|332288953|ref|YP_004419805.1| peptidyl-prolyl cis-trans isomerase SurA [Gallibacterium anatis
           UMN179]
 gi|330431849|gb|AEC16908.1| peptidyl-prolyl cis-trans isomerase SurA [Gallibacterium anatis
           UMN179]
          Length = 313

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/313 (15%), Positives = 109/313 (34%), Gaps = 15/313 (4%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           + T ++  +  +  +    +     ++  T+NG  I +  + +    L  +         
Sbjct: 1   MKTKWIKFLLLVGCLSLATTGYAVEKVVATVNGTPILNSQVKQA---LGKRADTAANRAA 57

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           A+ ++I + L ++ I+ + I+     +     Q A   GL+   F   LD QGIG+  F+
Sbjct: 58  ALDDVIDDMLVQKAIKDAKISVSQQQIQQIMHQIANENGLTYGQFLDALDYQGIGEAKFR 117

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR---------EYLIRTVLFS 186
           Q +A Q I   V              +I    ++M N   +            + + +  
Sbjct: 118 QQIAHQIIMGQVRNKAISESISVSREQIEKLGKQMYNEAKQKGTLKTVKSPQYLVSHILI 177

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQ 245
             +  L +    ++      +            + ++       + G   +       P+
Sbjct: 178 KTNPLLNDAQAKKQLSSLRSDIIAGKTTFAAAAKTYSKDYLSGANGGSLDWNFPEVYEPE 237

Query: 246 FQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKHEAE 303
           FQ++     +   + P+ T+ G   + + DKRD              Q    +  +   +
Sbjct: 238 FQSMVKNSKKGVISQPFKTKYGWHILEVVDKRDGDKTKEAYMQKAYQQVVNQQAMEASKD 297

Query: 304 YVKKLRSNAIIHY 316
           +VK LR +A I  
Sbjct: 298 WVKTLRKSADIKI 310


>gi|119474853|ref|ZP_01615206.1| peptidyl-prolyl cis-trans isomerase SurA [marine gamma
           proteobacterium HTCC2143]
 gi|119451056|gb|EAW32289.1| peptidyl-prolyl cis-trans isomerase SurA [marine gamma
           proteobacterium HTCC2143]
          Length = 440

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/317 (15%), Positives = 115/317 (36%), Gaps = 15/317 (4%)

Query: 8   SLSDFIKLLTTYFVLIIFCI--VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
             S  I+ LTT    ++FC+  +            ++   ++ +V+   ++ +R+A +  
Sbjct: 14  KSSRLIRSLTTLMASLLFCLPTIAAPDSNRGQALDQVIAIVDDDVVLASELQERVAQVVA 73

Query: 66  QKING--------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
                        E+ +  + +LI+E ++ Q   ++G+      +N   ++ A+   L+ 
Sbjct: 74  NIQQQGKEVPPLPEIRQSLMDQLILENIQMQLAVRAGVRISDAQLNDSMLRIAQQNQLTL 133

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
           + F   LD  G+     ++ +  + +   V + +   +    + EI       +   +  
Sbjct: 134 DQFRQALDADGLSYAGTREQIRKEMMLQRVQQGNVNQRVQITDQEITNFLDSDEGAALTA 193

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
              R +   IP     +   +      AE+  LR+ +  +  E  A+   + +     + 
Sbjct: 194 PDYRMLHTLIPLPSSASSADITAAKVRAEKLYLRVQEGESYEEVLATTPFETT--DLGWR 251

Query: 238 LESDLHPQFQNLLKKSQNNTT-NPYVTQKGVEYIAICDKRDLGGEIALK--AYLSAQNTP 294
             +DL     +L      + T  P  +  G   + + D R  G  I      ++  +++ 
Sbjct: 252 KAADLPSLIADLTTTMAKDETAEPVQSPSGFHLVKLADSRGEGELIPQAKVRHILLKSSA 311

Query: 295 TKIEKHEAEYVKKLRSN 311
            + E         LR  
Sbjct: 312 IRDEAATEALAISLRQQ 328



 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/290 (9%), Positives = 76/290 (26%), Gaps = 25/290 (8%)

Query: 52  TDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE--------IEKSGITFDSNTVN 103
           T   I K + L ++Q+ N         + I   L   E                   +  
Sbjct: 150 TREQIRKEMMLQRVQQGNVNQRVQITDQEITNFLDSDEGAALTAPDYRMLHTLIPLPSSA 209

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD--------------VVK 149
                 A               +          +      W                + K
Sbjct: 210 SSADITAAKVRAEKLYLRVQEGESYEEVLATTPFETTDLGWRKAADLPSLIADLTTTMAK 269

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
           ++      +            +         +     +  + ++++   +       +  
Sbjct: 270 DETAEPVQSPSGFHLVKLADSRGEGELIPQAKVRHILLKSSAIRDEAATEALAISLRQQI 329

Query: 210 LRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGV 267
           +          +++  I   +  G   +     L  +FQ ++ +   N+ + P+ +Q G 
Sbjct: 330 IDGADFGELAREYSEDIGSALEGGDLGWSSPGQLVGEFQKVMDQAEINDISAPFTSQFGW 389

Query: 268 EYIAICDKRDLGGEIALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             + + ++RD      ++  +        K       +++K+R  A + +
Sbjct: 390 HILQVLERRDKDVTDDIRRNITRNYLHKRKFGDELETWLQKIRDEAYVDF 439


>gi|75674587|ref|YP_317008.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter
           winogradskyi Nb-255]
 gi|74419457|gb|ABA03656.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter
           winogradskyi Nb-255]
          Length = 301

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/307 (12%), Positives = 91/307 (29%), Gaps = 47/307 (15%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK---LQKIN 69
           ++L+++     +  ++ + +      ++ +   +NG  I   D++     L     Q   
Sbjct: 14  VRLVSSVLGGCLAAVLLVGTPVHADDANPVLAKVNGSEIRQSDVNLAAEELGPSLAQMDP 73

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
              ++  +  LI   +  +  E+  +    +                             
Sbjct: 74  AAKQENVLSFLIDMKIIAKAAEEKKVENSEDFKKRL------------------------ 109

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                  +   + +   ++ ++      +  M+        +  + +E   R +L     
Sbjct: 110 ------AFARDRLLMDRLLASEGKAALTDSAMKTVYTDASKQITSEQEVHARHILVP--- 160

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
                    ++  K  EE   +        +K +        G   +  +  + P F + 
Sbjct: 161 --------TEEEAKKVEEELKKGADFAELAKKESKDPGASDGGDLGFFTKEQMVPDFSKV 212

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
                    ++P  TQ G   I + +KR           +  Q       K +AEYV KL
Sbjct: 213 AFALEPGKISDPVKTQFGWHIIKVEEKRARKA--PDFDQVKPQIEQFVTRKAQAEYVAKL 270

Query: 309 RSNAIIH 315
           R  A I 
Sbjct: 271 RETAKIE 277


>gi|294054384|ref|YP_003548042.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Coraliomargarita
           akajimensis DSM 45221]
 gi|293613717|gb|ADE53872.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Coraliomargarita
           akajimensis DSM 45221]
          Length = 330

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/329 (11%), Positives = 113/329 (34%), Gaps = 20/329 (6%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKS----WAMSSRIRTTINGEVITDGDISKRIALL- 63
           +S F  L+    ++++ C   + S         + + I     GE+IT   + + +  + 
Sbjct: 1   MSLFRSLVQLSTLILLPCAAVLSSNGQSVNLQQLGNGIAAIAEGEIITVEQLRREVEPII 60

Query: 64  -----------KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH-AR 111
                      + +    ++ +  +Q +I   +  Q  E+ G+    + ++  + Q  A 
Sbjct: 61  PRLRVEARTEDEFRTRIDQISREVLQNMIDRIIIVQAAEEKGLLIPQSYIDQEYNQVLAN 120

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
           + G     F  +L  QG+    +++ +  +     + + +   +       I     + K
Sbjct: 121 DFGGDRARFLEYLKFQGLTPREYRETIRKRVTVDVMRQQNRKSQSEMSPERIEEFYVRNK 180

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
               +   +      +     ++   +++  K             +   K++      S 
Sbjct: 181 LRFYQSESMHLRQIILTPMADESITLLRQTAKQVMSDLSEGADFGDTARKYSQDDMRRSG 240

Query: 232 GKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYL 288
           G   ++  +DL  +  +        N + P      +  +   +KRD  +     ++  +
Sbjct: 241 GDWGWIERADLRTELSDAAFSLESGNYSQPIELGGTIFILYCEEKRDEMIQPISEVRDII 300

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
                     + +  ++++LR+ A + Y+
Sbjct: 301 EDVLVGEIAREAQERWLEELRTKAYVRYF 329


>gi|226327125|ref|ZP_03802643.1| hypothetical protein PROPEN_00990 [Proteus penneri ATCC 35198]
 gi|225204343|gb|EEG86697.1| hypothetical protein PROPEN_00990 [Proteus penneri ATCC 35198]
          Length = 312

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 107/301 (35%), Gaps = 14/301 (4%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMS--SRIRTTINGEVITDGDISKRIALLKLQKI 68
             +K   T F+ ++  +    S  ++A    +R+   +N  V+ + D+++ +  +K+   
Sbjct: 8   KLMKNWKTLFIGLMITVGAATSSTTFAAQELNRVSAIVNNGVVLESDVNRMLQTVKMNAK 67

Query: 69  N--------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
           N          L +  ++ L+++ +  Q  ++  I      V       A    LS +  
Sbjct: 68  NAGQEMPDEQVLRQQILERLVMDNIILQMAQQMQIDIPDAAVESTIQGIAAENKLSLDQL 127

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
              L   GI  N ++Q +  + +  +V  N+   +   L  E+ +  ++++    +   +
Sbjct: 128 KKRLAADGISYNDYRQDIRKEMMLAEVRNNEVRRRITILPQEVDSLAKQIEGQASQRVDL 187

Query: 181 RTVLFSIPDNKLQNQGFVQKRIK---DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
                 IP ++      ++K  +                     +++    ++ G   + 
Sbjct: 188 NLSHILIPLSENPAPAEIEKAQQVITRIMNQLKNGTDFGKLAATYSADPQALNGGNMGWA 247

Query: 238 LESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK 296
              +L   F + L    +     P  +  G+  I + D R     +++    S      K
Sbjct: 248 SIDELPTLFAKELTNAQKGQIVGPIHSGVGLHIIKVNDIRGGSNTLSVTEVKSRHILLKK 307

Query: 297 I 297
           +
Sbjct: 308 L 308


>gi|288555301|ref|YP_003427236.1| post-translocation chaperonin [Bacillus pseudofirmus OF4]
 gi|288546461|gb|ADC50344.1| protein secretion (post-translocation chaperonin) [Bacillus
           pseudofirmus OF4]
          Length = 304

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 89/304 (29%), Gaps = 23/304 (7%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K +     L     +   S    A  S +  T++G  +T+ +   ++             
Sbjct: 3   KRMIAAVGLACMTALAACSNDDTATDSNVVVTVDGNEVTEAEFYDKMK--------ERYG 54

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           +  ++E++   L     ++ G+T +         +   N     E       +  +    
Sbjct: 55  QATLEEMVQRVLIADAKDELGVTEEEIEEGIENFKGQLNVETDEELLEILDAQFNMTYES 114

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
              ++    + P V+      +    E +  A  ++ + +   +     +L         
Sbjct: 115 MDDFVEDMIVPPIVLDKLAKSEVNVTEEDKQAYYEENEELYAEQVQASHIL--------- 165

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK- 252
                ++   +  E             +++        G   +    ++ P+F+      
Sbjct: 166 --VEDEETANEVLEKIEAGEDFGELAAEYSMDGSATRGGDLGFFGTGEMVPEFEEAAFGL 223

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
                ++   +Q G   I + D++   G       +       +  K   E ++ L  NA
Sbjct: 224 EVGEVSDAVESQYGYHIIKVTDRK--SGYEDFADDIEQALIQEQS-KSTEEVLRDLVDNA 280

Query: 313 IIHY 316
            I  
Sbjct: 281 TIDI 284


>gi|221069847|ref|ZP_03545952.1| SurA domain protein [Comamonas testosteroni KF-1]
 gi|220714870|gb|EED70238.1| SurA domain protein [Comamonas testosteroni KF-1]
          Length = 475

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/298 (16%), Positives = 99/298 (33%), Gaps = 18/298 (6%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKL--------QKINGELEKIAVQELIVE 83
           + +    +  I   +N E IT+ ++  R+A +               EL +  ++ LIVE
Sbjct: 62  AAQGVRSADYIVAVVNSEPITNNEVRARMARVAQNVTEQGGQLPSQSELARQVLERLIVE 121

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            ++ QE   +GI  D+  V+      AR          S L  +GI +  F+  +  Q +
Sbjct: 122 RVQLQEARDTGINVDNLAVDQAVANVARQNSTDRAGLVSRLKAEGISEAQFRAEIRSQML 181

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI-----RTVLFSIPDNKLQNQGFV 198
              V + D   +    E +I    ++ K                ++    +         
Sbjct: 182 MQRVRERDVDGRVKVTEADIDRYLKEQKRPGEAAAGAAANLGHILITVPENASPAVVEER 241

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           + R K A E+  + P     + +F+   +    G       SD    F Q +   +    
Sbjct: 242 EARAKQAAEAARKNPDFIAAVREFSDVPNGQGGGAMGMRAMSDYPELFVQQVGNAAVGAI 301

Query: 258 TNPYVTQKGVEYIAICDKRDLGG----EIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             P+ +  G   + + +K   G           ++         E   A+ ++  +  
Sbjct: 302 VGPFRSGAGFHVLKVLEKSQSGAPVYITQNHARHILLTVGEGMTEAQAAKRLEDYKRR 359



 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 90/285 (31%), Gaps = 18/285 (6%)

Query: 46  INGEV-ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           ++G V +T+ DI +    LK QK  GE    A   L    +   E     +  +      
Sbjct: 190 VDGRVKVTEADIDR---YLKEQKRPGEAAAGAAANLGHILITVPENASPAVVEEREARAK 246

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------FM 153
              + AR           F D             A+       V+             F 
Sbjct: 247 QAAEAARKNPDFIAAVREFSDVPNGQGGGAMGMRAMSDYPELFVQQVGNAAVGAIVGPFR 306

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
              G   +++    Q    + + +   R +L ++ +   + Q   +           +  
Sbjct: 307 SGAGFHVLKVLEKSQSGAPVYITQNHARHILLTVGEGMTEAQAAKRLEDYKRRVEAGQAT 366

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAI 272
                 ++F+      + G   +       P+F+ +L        +NP V++ GV  I +
Sbjct: 367 FQ-QLAQEFSKDGSARNGGDLGWSSPGQFVPEFERVLDSLQPGQISNPVVSRFGVHLIQL 425

Query: 273 CDKRDLGGEIALKAY-LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            ++R        +   +       K E+    ++K+LR  A + Y
Sbjct: 426 IERRQEKLTEREQREMVRNVVRERKAEQDYETWLKELRGKAFVEY 470


>gi|302389639|ref|YP_003825460.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermosediminibacter
           oceani DSM 16646]
 gi|302200267|gb|ADL07837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermosediminibacter
           oceani DSM 16646]
          Length = 297

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/308 (12%), Positives = 97/308 (31%), Gaps = 26/308 (8%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           I+  T  +++I   I+ +++  S   S  +   +NGE I+  ++   +  L        +
Sbjct: 7   IRRKTVTYLIIATAILALIAGCSPGSSKEVVARVNGEEISKDELYDVMVKL--------V 58

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            K A+  L+ + +   E +K  I      +     +     G                  
Sbjct: 59  GKEALDYLVSQKIIDLEAKKQNINVSEEDIQRELEKVYEYYGGEEAFTQ-----NLQMSG 113

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
           +  +           +K     K    E EI +  ++ K+   RE  +R           
Sbjct: 114 YSLEEYKKDLAMDIKIKKLLEPKISITEEEIKSYFEENKDNFAREKQVRARHIL------ 167

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLK 251
                 +++  +               +++++        G   +    D+  +F+    
Sbjct: 168 ---VENEEKANEVIAKLKSGEDFAELAKQYSTDTATKEKGGDLGFFGRGDMVKEFEEAAF 224

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
                  ++P  TQ G   I + + ++         K  +       K+++  + ++++L
Sbjct: 225 SLKVGEISSPVKTQYGYHIIKVEEIKEAQEANYEESKDKIKDILLNQKVQQEYSTWMQEL 284

Query: 309 RSNAIIHY 316
                +  
Sbjct: 285 YQQYEVEN 292


>gi|322418543|ref|YP_004197766.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
 gi|320124930|gb|ADW12490.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
          Length = 335

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 87/285 (30%), Gaps = 17/285 (5%)

Query: 46  INGEVITDGDISKRIALLKLQKINGE---------LEKIAVQELIVETLKKQEIEKSGIT 96
           +NG  IT  +I +   +L  Q    +           + A+ +L +  L  QE  K  I 
Sbjct: 49  VNGVAITRAEIERATRVLLSQSGAPQQLPPDAMQKASQAALDQLTMAELLYQEAAKIEIK 108

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
                V     +       + + F   L   G+      +      +    ++  F  K 
Sbjct: 109 DLDQQVEKKIAESKA-LYPNPDAFEEALKGSGLTVAEMTRNARKSIMINTFIEKRFASKV 167

Query: 157 GNLEMEIPANKQKMKNIT---VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
              + E     Q+ +              +L  + D     Q    K   +A   R++  
Sbjct: 168 EVTDAEAQKFYQENQEKYFTRPENARASHILVKVDDKLTAEQKQQAKEKAEALLKRVKGG 227

Query: 214 KDCNK-LEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIA 271
           +D     +  +        G         + P F+  +        ++   +Q G   I 
Sbjct: 228 EDFAAVAKTESGCPSATVGGDLGTFGRGQMVPPFEKAVFAMKPGEISSVVESQFGFHIIK 287

Query: 272 ICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           + +K + G       K  +       ++ K    +V +L+S A I
Sbjct: 288 LVEKHEAGKVSYEEAKTKIFEYLKAERVRKEVTSFVDELKSKAKI 332


>gi|71281900|ref|YP_271172.1| peptidyl-prolyl cis-trans isomerase SurA [Colwellia psychrerythraea
           34H]
 gi|122070643|sp|Q47VK0|SURA_COLP3 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|71147640|gb|AAZ28113.1| peptidyl-prolyl cis-trans isomerase SurA [Colwellia psychrerythraea
           34H]
          Length = 433

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/308 (12%), Positives = 98/308 (31%), Gaps = 16/308 (5%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMS-SRIRTTINGEVITDGDISKRIALLKLQKINGE-- 71
            +    +     I  I S ++      R+   +N  V+ + +++  +  +K Q       
Sbjct: 4   RIKALLLASSLIITTITSVQAKEELLDRVAAIVNTGVVLESEVNDLLVNIKQQAKKNNQS 63

Query: 72  ------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
                 L    + +LI ++L  Q  ++ GI      ++      AR   L+   F   + 
Sbjct: 64  LPSDKALRIQVMDKLINDSLLSQMGQRMGIQISDAQLDQTLNNMAREDKLTLAQFRQQVI 123

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
            +G     +++ + I+ +  +V +N    +      E+    + MK  +           
Sbjct: 124 DEGTSYEKYRENVRIELVSGEVSRNSVRRRIFVSPQEVDNLLKVMKEQSSNNVEYHLGHI 183

Query: 186 SIPDNKLQNQGFVQK---RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
            I      +Q  +     R     E               +   + +  G   +   +++
Sbjct: 184 LIEFPADASQEDLAAAKTRATKVVELLNDGSDFAKIAITSSGDANALKGGDLGWKNINEM 243

Query: 243 HPQFQNLLKKSQNN-TTNPYVTQKGVEYIAICDKRD---LGGEIALKAYLSAQNTPTKIE 298
              F  L+     +    P  T  G   + + D R    +  E    +++  + +    +
Sbjct: 244 PTLFSELINDKPKDTIVGPIRTGLGYSIVKVLDIRGRKVVEVEEVKASHILIKPSIILSD 303

Query: 299 KHEAEYVK 306
           +     ++
Sbjct: 304 EKAKSLLQ 311



 Score = 83.6 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 38/137 (27%), Gaps = 2/137 (1%)

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
            +   P   L ++           +            ++ +     V  G   +    + 
Sbjct: 292 HILIKPSIILSDEKAKSLLQGFLNQIDAGEATFEELAKEHSEGPTSVRGGDLGWADPKNY 351

Query: 243 HPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIA-LKAYLSAQNTPTKIEKH 300
            P F + L    +     P+ +  G   I + D+R +       +          K    
Sbjct: 352 DPAFTEALATMKKGGYHKPFRSSFGWHIIKLEDRRMVDATSQLNENRAYQILFNRKYGME 411

Query: 301 EAEYVKKLRSNAIIHYY 317
              ++K+ R  A I  +
Sbjct: 412 STRWLKETRDEAYIEIF 428


>gi|332798476|ref|YP_004459975.1| Foldase protein prsA [Tepidanaerobacter sp. Re1]
 gi|332696211|gb|AEE90668.1| Foldase protein prsA [Tepidanaerobacter sp. Re1]
          Length = 300

 Score =  117 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/319 (11%), Positives = 90/319 (28%), Gaps = 26/319 (8%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M + +         ++     + +       S  +    + +   IN EVIT  ++   +
Sbjct: 1   MRTILIKHKKFLASIIVLSLAIPLILSACNTSTSAKKADNNVVARINDEVITRDELYDAL 60

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
                     E     +  LI   + + E +K  IT     V     + A   G      
Sbjct: 61  V--------QENGDAVLNSLIANKIVELEAKKQNITVSEEDVQKEVDKLAEQYGGEEALT 112

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
                       +    +         VK          E EI +   + K        +
Sbjct: 113 QFLE-----MYGYSLDEIKENIKMNLNVKKLLEPTIKIEESEIKSYFDENKASFDTPEQV 167

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYLLE 239
           +                 +++ K+ ++            + +++    +   G+  Y  +
Sbjct: 168 KASHIL---------VDTEEKAKEVKQKLQDGEDFAELAKTYSTDTSNNQQGGELGYFSK 218

Query: 240 SDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTK 296
             + P+F+           ++P  T+ G   I + DK++         K  +       K
Sbjct: 219 GQMTPEFEEAAFSLKAGEISDPVKTEFGYHIIKVEDKKEAKEATYEESKDEVKNILLEEK 278

Query: 297 IEKHEAEYVKKLRSNAIIH 315
           +    + ++++      I 
Sbjct: 279 LSTAFSTWIQEKFGEYKIE 297


>gi|304311712|ref|YP_003811310.1| Peptidyl-prolyl cis-trans isomerase [gamma proteobacterium HdN1]
 gi|301797445|emb|CBL45665.1| Peptidyl-prolyl cis-trans isomerase [gamma proteobacterium HdN1]
          Length = 439

 Score =  117 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 91/278 (32%), Gaps = 16/278 (5%)

Query: 50  VITDGDISKRIALLKLQKIN--------GELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           +I   ++  R   +++Q            +L+   ++ +I E+ + Q  EK G+  D N 
Sbjct: 48  IILQSELLNRTRQIRIQIAKRGTEAPDEAKLQAQVLERMITESAELQLAEKMGVRVDDNA 107

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQG-IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
           +N      AR   LS E F + ++ +  +    +++ +  +     + +     +    +
Sbjct: 108 INEALANIARQNNLSLEQFQNVIEHEEGMTFASYREQVRREMTAHQLQQRRVASRIKISD 167

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            +I A                     I  +   +   + +    A+E   +L    +   
Sbjct: 168 QDIDAFLASDLGKENLAPDYHLGHILIAVHDDSDAASIDQAKAMADEVYRQLKSGADFAA 227

Query: 221 ---KFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKR 276
              +++     +  G   +     L   F +++      + + P  +  G   I I + R
Sbjct: 228 TAVRYSGDDKALEGGDLGWRKAGQLPTLFADVVVNMHRGDISAPIRSPSGFHIIKILETR 287

Query: 277 DLGGEIALKAYLSAQNT---PTKIEKHEAEYVKKLRSN 311
                +  +A +          + +       + +R  
Sbjct: 288 GGTEMLVPQAQVRHILIKPNEIRSDADAHALAEDIRRR 325



 Score = 88.6 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 13/138 (9%), Positives = 45/138 (32%), Gaps = 3/138 (2%)

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLES 240
             +   P+    +              +          + ++      +  G   ++   
Sbjct: 300 RHILIKPNEIRSDADAHALAEDIRRRLQQNKGDFAALAKTYSDDTGSALEGGSLGWVNPG 359

Query: 241 DLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKRDLG-GEIALKAYLSAQNTPTKIE 298
            + P+F+ ++  +     + P+ TQ G   + + ++R         +          K +
Sbjct: 360 VMVPEFEKVMNSEKIGTISQPFRTQFGWHILEVTERRKQDMTSEFKRNRARQMLFKRKFD 419

Query: 299 KHEAEYVKKLRSNAIIHY 316
           +  A +++++R +A +  
Sbjct: 420 EDLATWLREVRQDAYVEI 437


>gi|114331215|ref|YP_747437.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           eutropha C91]
 gi|114308229|gb|ABI59472.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           eutropha C91]
          Length = 424

 Score =  117 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 109/289 (37%), Gaps = 17/289 (5%)

Query: 40  SRIRTTINGEVITDGD----ISKRIALLKLQKIN----GELEKIAVQELIVETLKKQEIE 91
            RI   +N EVIT  +    +   I  L+ Q I       LEK  ++ LI++ ++ Q  +
Sbjct: 21  DRIVAVVNEEVITQQETNELLQNTIQQLQKQNIQLPSMEVLEKQLLERLIIKRIQLQRAK 80

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
           + G++   N ++    +  ++  L+ ++F   L ++G   + F+  +  + +   + + +
Sbjct: 81  EVGLSVSDNDLDQTLRRIVQDNHLTMDEFRQVLLQEGTNLSLFRDEIRDEILMSRLKEQE 140

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
              +    E EI    +   N        R     +  ++  ++  +  R K AE +   
Sbjct: 141 INSRVNVTESEIDNFLENQANSPAANEEYRIAHILVQTSEQMDEAQINTRHKRAEAAYED 200

Query: 212 LPKDCNKL---EKFASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGV 267
           L +  +      +++     +  G+  +     +  P  + LL+      T    +  G 
Sbjct: 201 LRQGISFAQVSAEYSDATDAMQGGELGWRPLGQIGSPFAELLLQMQPGEITPVVRSPIGF 260

Query: 268 EYIAICDKRDLG-----GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             + + ++R         E     ++  + +    E+   + + ++   
Sbjct: 261 HILKLLERRQQEKSVTIIEQTHAQHILIKVSEIISEEDAHQLIDQIMER 309



 Score = 98.2 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/274 (10%), Positives = 76/274 (27%), Gaps = 9/274 (3%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           +T+ +I   +   +        E      L+  + +  E + +     +        Q  
Sbjct: 147 VTESEIDNFLEN-QANSPAANEEYRIAHILVQTSEQMDEAQINTRHKRAEAAYEDLRQGI 205

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND------FMLKYGNLEMEIP 164
               +SAE   +    QG                  +++         +       +   
Sbjct: 206 SFAQVSAEYSDATDAMQGGELGWRPLGQIGSPFAELLLQMQPGEITPVVRSPIGFHILKL 265

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
             +++ +               I  +++ ++    + I    E            +  + 
Sbjct: 266 LERRQQEKSVTIIEQTHAQHILIKVSEIISEEDAHQLIDQIMERIHNGADFMEMAKAHSE 325

Query: 225 KIHDVSIGKAQYLLESDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAICDKRDLGGEIA 283
                + G   ++   D  P+F+  +        + P  T  G   I + ++R       
Sbjct: 326 DASASAGGDLGWVSPGDTVPEFEQAMNALLPGQISQPVRTSFGWHLIKVIERRSQDVSEQ 385

Query: 284 LKAY-LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            +           K +    E++++LR  A + Y
Sbjct: 386 KQRETARKTIHARKADAVTQEWLQQLRDQAYVEY 419


>gi|294012540|ref|YP_003546000.1| peptidyl-prolyl cis-trans isomerase SurA [Sphingobium japonicum
           UT26S]
 gi|292675870|dbj|BAI97388.1| peptidyl-prolyl cis-trans isomerase SurA [Sphingobium japonicum
           UT26S]
          Length = 461

 Score =  117 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 88/256 (34%), Gaps = 10/256 (3%)

Query: 44  TTINGEVITDGDISKRIALLKLQK-------INGELEKIAVQELIVETLKKQEIEKSGIT 96
             +NG +IT  D+ +R+AL+               L    ++ LI ETL+ QE   + I 
Sbjct: 73  AIVNGRIITGTDVDQRLALIITANGGKVSDEEKERLRVQVLRNLIDETLQIQEAAANDIK 132

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
            D   ++  + + A N   S   F  +L +QG      K+ +  +  W  +++ +     
Sbjct: 133 VDKAEIDQSYERVAANFRQSPAQFDQYLRQQGSSSASIKRQIEGELAWSRLLRRNIQPFV 192

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
              E E+ +   +M      +      ++     + Q Q     R  +  +   +     
Sbjct: 193 NVSEDEVKSVVDRMNAAKGSDEFRIGEIYLSATPENQQQIIANAR--NIIDQIKQGGSFA 250

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDK 275
               +F+        G   ++    L  +      +        P     GV  I + DK
Sbjct: 251 AYARQFSEASTAAVGGDLGWVRPVQLPDELAQAAAEMQVGQIAGPIGVPGGVSIIYVMDK 310

Query: 276 RDLGGEIALKAYLSAQ 291
           R +       A LS +
Sbjct: 311 RKVLTADPRDALLSLK 326



 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 233 KAQYLLESDLHPQFQNLL-KKSQNNTTNPYVT-QKGVEYIAICDKRDLGGEI-ALKAYLS 289
               +   DL PQ Q++L        T P+ +   GV  + +C + +           + 
Sbjct: 374 DNDNVKLRDLPPQLQDILLNLQVGEATPPFGSINDGVRVLVVCGRDEASSAAAPNAEQIM 433

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           AQ    ++ K    Y++ LR +A+I Y
Sbjct: 434 AQLEEERVNKRARIYLRDLRRDAVIDY 460


>gi|240113831|ref|ZP_04728321.1| putative cis-trans isomerase [Neisseria gonorrhoeae MS11]
 gi|240118789|ref|ZP_04732851.1| putative cis-trans isomerase [Neisseria gonorrhoeae PID1]
 gi|240126540|ref|ZP_04739426.1| putative cis-trans isomerase [Neisseria gonorrhoeae SK-92-679]
 gi|240129002|ref|ZP_04741663.1| putative cis-trans isomerase [Neisseria gonorrhoeae SK-93-1035]
 gi|260439674|ref|ZP_05793490.1| putative cis-trans isomerase [Neisseria gonorrhoeae DGI2]
          Length = 332

 Score =  117 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 88/292 (30%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKL------QKINGELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT+  +++ +A  K       Q    EL +  + +L+ ++L  Q  ++
Sbjct: 55  SDGIAAVADNEVITNRRLAEAVAEAKATLPEDAQISESELSRQVLMQLVNQSLIVQAGKR 114

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    Q+     LS                     LA   I   V +   
Sbjct: 115 RNIQASEAEIDAVVAQNPALKNLSPTQRR---------------ELADNIIAEKVRQQAV 159

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 160 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 219

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
           +             +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 220 DQARNGTDFAGLARRYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 279

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    E  ++  +       K  +     ++ L S A +  
Sbjct: 280 GWHIIKLNEVRDAGTPEERIRNSVRQYIFQQKAGQATVNLLRDLHSGAYVDI 331


>gi|189425796|ref|YP_001952973.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi
           SZ]
 gi|189422055|gb|ACD96453.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi
           SZ]
          Length = 335

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/289 (11%), Positives = 90/289 (31%), Gaps = 15/289 (5%)

Query: 43  RTTINGEVITDGDISKRIALLKLQ--------KINGELEKIAVQELIVETLKKQEIEKSG 94
              +NG  I   D+ K +                  E+++  + +++   L  Q  + + 
Sbjct: 46  VARVNGVAIPAADLQKALNAFSKSPSAAQVPPGKEKEVQQFLLNQMLGGELMYQVAKATP 105

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
           +      ++    +       + E       +QG+ +   ++ +    I  + ++   + 
Sbjct: 106 VKDLDKKIDDAVTKLKARFKTNDEYLQGL-KEQGLSEKDLRELIRRNVIIENHIEQVIVP 164

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
           K    + E+     K      +   +R     I  +        +K  +  E+   ++  
Sbjct: 165 KQVVTDAEMKEFYDKNPETFTQPEQVRASHILITLDAKATDADKKKAKEKIEDLLKQVKA 224

Query: 215 DCNKLE---KFASKIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEYI 270
             +  +   + +        G   Y  +  +   F+         + +    TQ G   I
Sbjct: 225 GADFAKLAQENSGCPSSKQGGDLGYFGKGQMVKPFEETAFAMKPGDVSGVVETQFGYHII 284

Query: 271 AICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            + +K+         +KA ++      K+ +     ++  +  A I  +
Sbjct: 285 KLTEKKAAAKVAFDEVKAKIADSLKRKKVTEAINATLEDAKKKAKIEVF 333


>gi|332994413|gb|AEF04468.1| survival protein surA [Alteromonas sp. SN2]
          Length = 426

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 101/312 (32%), Gaps = 15/312 (4%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING---- 70
           +      L++  ++   SY    M  R+   ++  V+   ++   +  +K          
Sbjct: 1   MKFIIRALLVSAVLSFSSYAQEVMLDRVAVIVDQGVVLQSEVDALMNDVKRNAEANGQDL 60

Query: 71  ----ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
                L   A++ LI ++L+ Q  ++ GI      +       A N   + ++    L  
Sbjct: 61  PSDRALRTQAIERLITKSLQLQMAQRMGIQISDPQLEQTIANIAANQNTTVDELRRQLRL 120

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
           +GI    +++ +  + +  +V + +   +    + E     + M+     +   R     
Sbjct: 121 EGIAYEDYREDIREEIVMGEVRRANVRRRVYITDQERETLIELMEQQGAEQEEYRLGHIL 180

Query: 187 IPDNKLQNQGFVQKRIKDAEE---SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
           I      +   +    + A++                  +S    +  G   +L  + + 
Sbjct: 181 IGFPSDPSDEQIDAARERADKVLSLLNSGSDFAKIAIASSSGNEALEGGDMGWLNINAMP 240

Query: 244 PQFQNLLKKS-QNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEK 299
             F   ++   ++    P  +  G   + + D R    +  E     ++  + +    E 
Sbjct: 241 TLFAEAIQGKAKDELVGPIRSGAGFHILKVLDTRGIEKVTIEEVNSRHILVKPSIILSED 300

Query: 300 HEAEYVKKLRSN 311
                + K R+ 
Sbjct: 301 KAKAMLVKFRAQ 312



 Score = 77.4 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 46/139 (33%), Gaps = 3/139 (2%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLL 238
               +   P   L         +K   +      +  +  ++ +      +  G+  +  
Sbjct: 285 NSRHILVKPSIILSEDKAKAMLVKFRAQLEAGEVEFEDLAKEHSEDPGSALKGGELGWSD 344

Query: 239 ESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR-DLGGEIALKAYLSAQNTPTK 296
            ++  P F++   + S    ++P  +  G   I + D+R D   E   +          K
Sbjct: 345 PNNYVPAFKDALAQLSAGEYSDPVRSVHGWHLIQLIDRRVDDATERRKEDKAYQLIFNRK 404

Query: 297 IEKHEAEYVKKLRSNAIIH 315
             +    +++++R  A I 
Sbjct: 405 FAEETENWLREMRDAAYIE 423


>gi|148262224|ref|YP_001228930.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           uraniireducens Rf4]
 gi|146395724|gb|ABQ24357.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           uraniireducens Rf4]
          Length = 310

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/312 (14%), Positives = 88/312 (28%), Gaps = 51/312 (16%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSR-----IRTTINGEVITDGDISKRIA----LLK 64
           KLLT    +                 S+     +   +NG VIT  D +K +      LK
Sbjct: 8   KLLTIALCVTALFGCKAKVGSEAGKESQKKSGQVLAEVNGSVITTSDYNKELETLPPYLK 67

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                 E +K  +  +IV  L  Q+ +K GI       +                     
Sbjct: 68  PMTETPEGKKELLDTMIVRELILQQADKDGIDKSQAVADKL------------------- 108

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
                        L  + +    +K     +    + E+     K K+       ++   
Sbjct: 109 -----------ADLKKRVVVEAFLKKKVEEEAKISDTELQDFYNKNKDKFKTGEQVKASH 157

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             +               ++  +            +K +        G   +  +  + P
Sbjct: 158 ILVKTEPEA---------QEILKQLKAGGNFDELAKKHSIDAAAAKGGDLGWFGKGAMLP 208

Query: 245 QFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHE 301
            F+  +    +   +    T+ G   I +  KR  G      +K  L A   P K ++  
Sbjct: 209 DFEKAVFGLKEGAISGVVKTKFGYHIIKLTGKRPAGIRPFDEVKDQLKAAILPEKQQEVF 268

Query: 302 AEYVKKLRSNAI 313
            +  + L+ +A 
Sbjct: 269 KKLKEDLKKSAK 280


>gi|299132839|ref|ZP_07026034.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Afipia sp. 1NLS2]
 gi|298592976|gb|EFI53176.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Afipia sp. 1NLS2]
          Length = 298

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 50/319 (15%), Positives = 92/319 (28%), Gaps = 49/319 (15%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI---S 57
           MT    T+ +  + LL+T    +   +  + +    A  + +   +NG  I   D+    
Sbjct: 1   MTLPTRTTSAVRLGLLSTA--ALCMAMTLMAAQPLRADDNPVLAKVNGSEIRQSDVTAAE 58

Query: 58  KRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
           K I     Q      +   VQ LI   L  +  E   I    +                 
Sbjct: 59  KDIGPSLAQLDPASRQASVVQLLIDLKLVAKAAEDKKIADTPDFKQKL------------ 106

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
                              +   + +   ++  +      +  ++   +    +    +E
Sbjct: 107 ------------------AFTRSRLLMDTLLDQEGKAAVTDAALKKVYDDAAKQISGEQE 148

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
              R +L              +   K+      +        +K +        G   Y 
Sbjct: 149 VHARHILVG-----------TEAEAKEIIAELKKGADFAELAKKKSKDPGASDGGDLGYF 197

Query: 238 LESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK 296
            +  + P+F            + P  +Q G   I + DKR           +  Q     
Sbjct: 198 TKDQMVPEFSAAAFALEPGKISEPVKSQFGWHVIKVEDKRARKA--PPFEQVKPQLEAFV 255

Query: 297 IEKHEAEYVKKLRSNAIIH 315
           I K +AEYV KLRS+A I 
Sbjct: 256 IRKAQAEYVAKLRSDAKIE 274


>gi|239999806|ref|ZP_04719730.1| putative cis-trans isomerase [Neisseria gonorrhoeae 35/02]
 gi|240014962|ref|ZP_04721875.1| putative cis-trans isomerase [Neisseria gonorrhoeae DGI18]
 gi|240017410|ref|ZP_04723950.1| putative cis-trans isomerase [Neisseria gonorrhoeae FA6140]
 gi|240116565|ref|ZP_04730627.1| putative cis-trans isomerase [Neisseria gonorrhoeae PID18]
 gi|240122031|ref|ZP_04734993.1| putative cis-trans isomerase [Neisseria gonorrhoeae PID24-1]
          Length = 332

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 88/292 (30%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKL------QKINGELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT+  +++ +A  K       Q    EL +  + +L+ ++L  Q  ++
Sbjct: 55  SDGIAAVADNEVITNRRLAEAVAEAKATLPEDAQISESELSRQVLMQLVNQSLIVQAGKR 114

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    Q+     LS                     LA   I   V +   
Sbjct: 115 RNIQASEAEIDAVVAQNPALKNLSPTQRR---------------ELADNIIAEKVRQQAV 159

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 160 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSKNAAVGAESTIRKIY 219

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
           +             +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 220 DQARNGTDFAGLARRYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 279

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    E  ++  +       K  +     ++ L S A +  
Sbjct: 280 GWHIIKLNEVRDAGTPEERIRNSVRQYIFQQKAGQATVNLLRDLHSGAYVDI 331


>gi|227357298|ref|ZP_03841655.1| chaperone SurA protein [Proteus mirabilis ATCC 29906]
 gi|227162561|gb|EEI47550.1| chaperone SurA protein [Proteus mirabilis ATCC 29906]
          Length = 445

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 44/322 (13%), Positives = 123/322 (38%), Gaps = 23/322 (7%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSW-----AMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           KL+  +  L+I  ++ + +  S         +R+   +N  V+ + D+++ +  +++   
Sbjct: 8   KLMKNWKTLVIGLMITVGAATSTTTFAAQELNRVSAIVNNGVVLESDVNRMLQTVQMNAK 67

Query: 69  N--------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
           N          L +  ++ L+++ +  Q  ++  I      V       A    L+ E  
Sbjct: 68  NAGQEMPDEQVLRQQILERLVMDNIILQMAQQMQIDIPEAAVESTIQGIAAENNLTLEQL 127

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
              L   GI  N ++Q +  + +  +V  N+   +   L  E+ +  +++++   +   +
Sbjct: 128 KKRLAADGIAYNDYRQDIRKEMMLAEVRNNEVRRRITILPQEVDSLAKQIESQASQSIDL 187

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYL 237
                 IP ++  +   ++K  +     + +L    +       +++    ++ G   + 
Sbjct: 188 NLSHILIPLSENPSPAEIEKAQQVVNRIKNQLKNGADFGKLAATYSADPQALNGGNMGWA 247

Query: 238 LESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQN 292
              +L   F + L    +     P  +  G+  I + D R     +        ++  ++
Sbjct: 248 SIDELPTIFAKQLANAQKGEIVGPLQSGVGLHIIKVNDIRGASKTVSVTEVKARHILLKS 307

Query: 293 TPTKIEKHEAEYVKKLRSNAII 314
           +P   ++     ++K+  +A I
Sbjct: 308 SPIMNDEQAYAKLQKI--SADI 327



 Score = 78.2 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 51/138 (36%), Gaps = 3/138 (2%)

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLES 240
             +       + ++    K  K + + R       +  ++++      +  G+  + +  
Sbjct: 301 RHILLKSSPIMNDEQAYAKLQKISADIRSGKISFADAAKEYSEDPGSALRGGELGWSMPD 360

Query: 241 DLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIE 298
              P F++  ++ ++N  + P  +  G   I + D R +   + A K          K  
Sbjct: 361 IYDPAFRDALMRLNKNELSQPVRSNFGWHLIELEDTRSVDKTDAANKEQAYRLLFNRKFN 420

Query: 299 KHEAEYVKKLRSNAIIHY 316
           +    ++++LR+ A +  
Sbjct: 421 EEVQNWMQELRAGAYVKI 438


>gi|307294654|ref|ZP_07574496.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingobium
           chlorophenolicum L-1]
 gi|306879128|gb|EFN10346.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingobium
           chlorophenolicum L-1]
          Length = 461

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 86/256 (33%), Gaps = 10/256 (3%)

Query: 44  TTINGEVITDGDISKRIALLKLQK-------INGELEKIAVQELIVETLKKQEIEKSGIT 96
             +NG +IT  D+ +R+AL+               L    ++ LI ETL+ QE   + I 
Sbjct: 73  AIVNGRIITGTDVDQRLALILTANGGKVSDEEKERLRVQVLRNLIDETLQIQEAAANDIK 132

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
            D   ++  + + A N   S   F  +L  QG      K+ +  +  W  +++ +     
Sbjct: 133 VDKAEIDQSYERVAANFRQSPSQFDQYLRAQGSSSASIKRQIEGELAWSRLLRRNIQPFV 192

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
              E E+       +    +      +         +NQ  +    ++  E   +     
Sbjct: 193 NVSEDEVK--SVVDRMNAAKGSDEYRIGEIYLSATPENQQQIVANARNIIEQIKQGGSFA 250

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDK 275
               +F+        G   ++  + L  +      +        P     GV  I + DK
Sbjct: 251 AYARQFSEASTAAVGGDLGWVRPAQLPDELAQAAAEMQVGQLAGPIAVPGGVSIIYVMDK 310

Query: 276 RDLGGEIALKAYLSAQ 291
           R +       A LS +
Sbjct: 311 RKVLTADPRDALLSLK 326



 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 233 KAQYLLESDLHPQFQNLL-KKSQNNTTNPYVT-QKGVEYIAICDKRDLGGEI-ALKAYLS 289
               +   DL PQ Q++L        T P+ +   GV  + +C + +           + 
Sbjct: 374 DNDNVKLRDLPPQLQDILLNLQVGEATPPFGSISDGVRVLVVCGRDEASSAAAPNAEQIM 433

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           AQ    ++ K    Y++ LR +A+I Y
Sbjct: 434 AQLEEERVNKRARIYLRDLRRDAVIDY 460


>gi|291042915|ref|ZP_06568656.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae DGI2]
 gi|291013349|gb|EFE05315.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae DGI2]
          Length = 333

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 88/292 (30%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKL------QKINGELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT+  +++ +A  K       Q    EL +  + +L+ ++L  Q  ++
Sbjct: 56  SDGIAAVADNEVITNRRLAEAVAEAKATLPEDAQISESELSRQVLMQLVNQSLIVQAGKR 115

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    Q+     LS                     LA   I   V +   
Sbjct: 116 RNIQASEAEIDAVVAQNPALKNLSPTQRR---------------ELADNIIAEKVRQQAV 160

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 161 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 220

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
           +             +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 221 DQARNGTDFAGLARRYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 280

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    E  ++  +       K  +     ++ L S A +  
Sbjct: 281 GWHIIKLNEVRDAGTPEERIRNSVRQYIFQQKAGQATVNLLRDLHSGAYVDI 332


>gi|255264369|ref|ZP_05343711.1| ppic-type ppiase domain protein [Thalassiobium sp. R2A62]
 gi|255106704|gb|EET49378.1| ppic-type ppiase domain protein [Thalassiobium sp. R2A62]
          Length = 404

 Score =  116 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 7/278 (2%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           ++ +     LI+  +    +      S  I   +N EVIT  ++ +R  LL + +  G L
Sbjct: 1   MRRILLGLALILTSLTTAPAMAQGLFSPAII--VNDEVITRYELDQRAKLLGVLRTPGNL 58

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            ++A ++LI + LK + I  +G+    + +       A    L    F+  L++ G+   
Sbjct: 59  SELAQEQLIEDRLKARLIRNAGLQLTGDGLQQALSDFAGRANLDLATFTQVLNQNGVEQE 118

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             +  +A    W + ++  +  +    + EI               LI  ++     +  
Sbjct: 119 TLRDLVATGVSWREYIRTRYGNRAQITDNEIDRALSSTGGRAGIRVLISEII----MDAR 174

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL-K 251
                  +   +             +  + +      + G+  +L  SDL P  Q ++  
Sbjct: 175 PQVATSAQARAERISKLTSTAAFSAEARRVSLLPSRENGGRLDWLPLSDLPPTVQPIILN 234

Query: 252 KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS 289
            S    T P      +    +    +        + + 
Sbjct: 235 LSPGEITPPLPIPNALALFQLRAIEETSVTPPTYSAIE 272



 Score = 44.7 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 4/84 (4%)

Query: 237 LLESDLHPQFQNL-LKKSQNNTTNPYVTQKG--VEYIAICDKRDL-GGEIALKAYLSAQN 292
           L  +D+         K      +       G  + ++ +C +    GG    +  +  Q 
Sbjct: 320 LPPADIPQDVAFELAKLDPGEISTVLTRSNGETLVFLMLCGRTPELGGAEVNREGVRDQL 379

Query: 293 TPTKIEKHEAEYVKKLRSNAIIHY 316
              ++  +    + +LR++A I +
Sbjct: 380 RSRRLNGYADALLSELRADANIRF 403


>gi|240081552|ref|ZP_04726095.1| putative cis-trans isomerase [Neisseria gonorrhoeae FA19]
 gi|240124329|ref|ZP_04737285.1| putative cis-trans isomerase [Neisseria gonorrhoeae PID332]
          Length = 332

 Score =  116 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 88/292 (30%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKL------QKINGELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT+  +++ +A  K       Q    EL +  + +L+ ++L  Q  ++
Sbjct: 55  SDGIAAVADNEVITNRRLAEAVAEAKATLPEDAQISESELSRQVLMQLVNQSLIVQAGKR 114

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    Q+     LS                     LA   I   V +   
Sbjct: 115 RNIQASEAEIDAVVAQNPALKNLSPTQRR---------------ELADNIIAEKVRQQAV 159

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 160 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 219

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
           +             +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 220 DQARNGTDFTGLARRYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 279

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    E  ++  +       K  +     ++ L S A +  
Sbjct: 280 GWHIIKLNEVRDAGTPEERIRNSVRQYIFQQKAGQATVNLLRDLHSGAYVDI 331


>gi|194099607|ref|YP_002002738.1| putative cis-trans isomerase [Neisseria gonorrhoeae NCCP11945]
 gi|268595616|ref|ZP_06129783.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 35/02]
 gi|293398076|ref|ZP_06642281.1| peptidyl-prolyl cis-trans isomerase SurA [Neisseria gonorrhoeae
           F62]
 gi|193934897|gb|ACF30721.1| putative cis-trans isomerase [Neisseria gonorrhoeae NCCP11945]
 gi|268549005|gb|EEZ44423.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 35/02]
 gi|291611339|gb|EFF40409.1| peptidyl-prolyl cis-trans isomerase SurA [Neisseria gonorrhoeae
           F62]
 gi|317165096|gb|ADV08637.1| putative cis-trans isomerase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 333

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 88/292 (30%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKL------QKINGELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT+  +++ +A  K       Q    EL +  + +L+ ++L  Q  ++
Sbjct: 56  SDGIAAVADNEVITNRRLAEAVAEAKATLPEDAQISESELSRQVLMQLVNQSLIVQAGKR 115

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    Q+     LS                     LA   I   V +   
Sbjct: 116 RNIQASEAEIDAVVAQNPALKNLSPTQRR---------------ELADNIIAEKVRQQAV 160

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 161 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSKNAAVGAESTIRKIY 220

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
           +             +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 221 DQARNGTDFAGLARRYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 280

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    E  ++  +       K  +     ++ L S A +  
Sbjct: 281 GWHIIKLNEVRDAGTPEERIRNSVRQYIFQQKAGQATVNLLRDLHSGAYVDI 332


>gi|332140206|ref|YP_004425944.1| survival protein surA [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550228|gb|AEA96946.1| survival protein surA [Alteromonas macleodii str. 'Deep ecotype']
          Length = 427

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 101/312 (32%), Gaps = 15/312 (4%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--- 71
           +      L++  ++   S     +  R+   ++  V+ + +I   +  +K      +   
Sbjct: 1   MKFIIRALMLGALLSFNSIAQEVVLDRVAVIVDQGVVLESEIDALVQEVKRNAAANDQQL 60

Query: 72  -----LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
                L   A++ LI ++L+ Q  E+ GI      +       A N   + E   + L  
Sbjct: 61  PSDRALRTQAIERLITKSLQLQMAERMGIRISDPQLEQTIGNIASNQNATVEQLRAQLAA 120

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP---ANKQKMKNITVREYLIRTV 183
           +GI  + +++ +  + I  +V + +   +      EI       ++         L   +
Sbjct: 121 EGIAYDDYREDIREEIIMGEVRRANVRRRVYITPQEIETLVDLMEQQGAQQAEYRLGHIL 180

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
           +   P+   ++    ++R                     +S    +  G   +L  + + 
Sbjct: 181 IGFPPEPTDEDIQAARERADKVIALLESGSDFAKIAIASSSGNEALEGGDMGWLNINAMP 240

Query: 244 PQFQNLLKKSQNN-TTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEK 299
             F   ++    +    P  +  G   + + D R    +  E     ++  + +    E 
Sbjct: 241 TLFAEAIQNKDKDALVGPIRSGAGFHILKVLDTRGIEKVTVEEVNSRHILVKPSIILSED 300

Query: 300 HEAEYVKKLRSN 311
                + + +  
Sbjct: 301 KAKAMLTRFKEE 312



 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 48/143 (33%), Gaps = 4/143 (2%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKA 234
            E   R +L        +++          EE +    +  +  ++ +      +  G+ 
Sbjct: 282 EEVNSRHILVKPSIILSEDKAKAMLTRFK-EELKNGEAEFADLAKEHSEDPGSALRGGEL 340

Query: 235 QYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR-DLGGEIALKAYLSAQN 292
            +    +  P+F+    +      ++P  T  G   I + D+R D   +   +       
Sbjct: 341 GWSDPGNYVPEFKEALSQLEPGEYSDPVRTVHGWHLIQLIDRRMDDATDKRKEDKAYQLI 400

Query: 293 TPTKIEKHEAEYVKKLRSNAIIH 315
              K  +    +++++R  A + 
Sbjct: 401 FNRKFSEETENWLREMRDAAYVE 423


>gi|167646489|ref|YP_001684152.1| SurA domain-containing protein [Caulobacter sp. K31]
 gi|167348919|gb|ABZ71654.1| SurA domain [Caulobacter sp. K31]
          Length = 452

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 103/291 (35%), Gaps = 19/291 (6%)

Query: 39  SSRIRTTINGEVITDGDISKRIALL-------KLQKINGELEKIAVQELIVETLKKQEIE 91
           S  +   +N ++I+  D+ +R+ LL         Q+   +LE+ A++ LI E ++ QE+ 
Sbjct: 57  SESVAAVVNDDIISSYDLMQRMRLLMVTSGLQPTQENLPQLEQEALRSLIDEHVQMQELR 116

Query: 92  KSGITFD------SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
           +               V       A+   L+ +  +  L  QG+G + +K  +   S W 
Sbjct: 117 RVEKAQKITIISTDKEVEEQIEDIAKGNNLTGQQLTQQLRAQGVGIDTWKAQIRADSSWQ 176

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
             +   +  +    + +I A +++      +     + +F     ++          K  
Sbjct: 177 AWISGRYGSRLRIGDDQIKAFERRQAEAASKPQYQVSEVFIDA-GRVGGMETAVNGAKQL 235

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQ 264
                +         +F++     + G A ++   ++ P+    + +      + P   +
Sbjct: 236 VTQMQQGAPFPAVARQFSASPTAANGGDAGWISPGEMPPEVDAAIEQLRPGQLSAPIPVR 295

Query: 265 KGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            GV  I + +KR        ++   A    ++          + +  L+  
Sbjct: 296 DGVYIIYLREKRSGAKTALVDLKQVALALPKDASQAQVDAANKVLLDLKPK 346



 Score = 85.1 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 2/126 (1%)

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL 250
           K  +Q  V    K   + + ++       E  A K+  V  G       +DL P FQ   
Sbjct: 326 KDASQAQVDAANKVLLDLKPKIVNCETL-EATAGKVEGVVAGDLGEAEITDLAPAFQQAA 384

Query: 251 KK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
                   ++P  T  G+  IA+C KR  G +   +  +  +    ++      Y++ LR
Sbjct: 385 NTLKVGQVSDPIRTDAGLHLIAVCGKRQSGAQAPTRDQIENRLRGQQLALISKRYLRDLR 444

Query: 310 SNAIIH 315
           ++A I 
Sbjct: 445 NSATIE 450


>gi|218781644|ref|YP_002432962.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763028|gb|ACL05494.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 358

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 46/340 (13%), Positives = 98/340 (28%), Gaps = 37/340 (10%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAM-----SSRIRTTINGEVITDGDISK---------- 58
           KL+    V+ +     I             S ++   +NG  IT  ++ +          
Sbjct: 3   KLVMPALVIAMLLAWVIPGAALAEAGADDGSEKVVAVVNGASITQAELDQALMQGMLNAT 62

Query: 59  ---RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR---- 111
              +++  + Q+   +     + +LI++ L  QEIEK  IT     +     +       
Sbjct: 63  KGMQLSPEQAQRFKSQYSGRVLDKLIMDELLSQEIEKRKITAAPGEMAKALSEQLELQLM 122

Query: 112 ---NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF----MLKYGNLEMEIP 164
               T    E+       Q             +     +++         K    + EI 
Sbjct: 123 ASGRTKKEYEESDLKAKGQTWDQFIAGIAARPEVAHMYLLEKMAKTIAPEKVKVTDAEIR 182

Query: 165 ANKQKM-KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR----LPKDCNKL 219
                  ++   +   +R           +     +   K A+E  L+            
Sbjct: 183 KFYDDNLESRFTKPEEVRASHILFGTKDAKTAEEKEAIKKQAQEVLLKAKKPGADFAALA 242

Query: 220 EKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
            +++S       G   +  +  + P+F +          +N   TQ G   I + DK   
Sbjct: 243 REYSSCPSKEKGGDLNFFTKERMVPEFSKAAFSMEVGEISNLVETQFGYHIIKVTDKTPA 302

Query: 279 G--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                 +    +       ++++        L+  A I Y
Sbjct: 303 EVRPFESAALAIRKGLETQRVQQELMTLANGLKEKATITY 342


>gi|15603073|ref|NP_246145.1| hypothetical protein PM1208 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721561|gb|AAK03292.1| SurA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 311

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/317 (15%), Positives = 114/317 (35%), Gaps = 20/317 (6%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
            +K++    +      + I    + A + R+  T+NG  + +  + K +           
Sbjct: 1   MMKMINVKSIFWAILGLFIYVSTAQA-AERVVATVNGVPVLESQVKKNM-------GKKG 52

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
             ++A+ ++I + L +Q I+ SGI  +   V+      A   GL+       LD QGI  
Sbjct: 53  QYQVALDKVIDDILVQQAIQNSGIKVNYAQVDQIIEGIAAQNGLTYGQLLDALDYQGISY 112

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR---------EYLIRT 182
           N ++Q +A Q +  ++              ++ A   ++ N   +               
Sbjct: 113 NAYRQQIANQILMGEIRNQAIGQSIDVTREQVEALSNQLLNQAKQAGTEKKISAPQYEVR 172

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQY-LLES 240
            +    +  L +     +  +   +         +    ++       + G   +   E+
Sbjct: 173 HILLKLNPLLNDAQAKAQLTQIRADIIAGKMSFADAALHYSKDYLSGANGGSLGFAFPEA 232

Query: 241 DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEK 299
            +    + +L   +   + P+ T+ G   + + + R+    I +       Q    +++ 
Sbjct: 233 YVGAFQKAILTTKKGVISAPFKTEFGWHILEVTNTREGDKTIDVYRQKAYEQLVNQQVKD 292

Query: 300 HEAEYVKKLRSNAIIHY 316
            E ++VK LR NA I Y
Sbjct: 293 VEKDWVKALRKNAEIRY 309


>gi|119775949|ref|YP_928689.1| survival protein surA [Shewanella amazonensis SB2B]
 gi|119768449|gb|ABM01020.1| survival protein surA [Shewanella amazonensis SB2B]
          Length = 434

 Score =  116 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 34/310 (10%), Positives = 98/310 (31%), Gaps = 15/310 (4%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK----- 67
           +K         +   +   S  +     R+   +N  ++ + +I   +  +K        
Sbjct: 1   MKPCKKLIFAALAMTMGFQSLAAPQPLDRVAVQVNDGIVLESEIQNMMDTVKKNALAAGQ 60

Query: 68  ---INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
               +  L    ++ LI+  L+ Q  E+ G+      ++      AR   ++       +
Sbjct: 61  TLPSDDALRTQVIERLILTRLQLQMAERVGLHIGDLQLDQAIENIAREQKMTVAQMQQAI 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
             +G+    +++ L  +    ++ +     +      EI    + ++    ++   +   
Sbjct: 121 QAEGMSFAQYREQLREEITLGEIQRIQVQRRIQVSPQEINNLVKMIEEQGNKDVEYQIGH 180

Query: 185 FSIPDNKLQNQGFVQ---KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             I          ++   KR +   +         +     +S    +  G   Y+  ++
Sbjct: 181 ILIEVPSNPTSAELESASKRAQAVMDRLNSGNDFRSIAIAASSGPKALEGGVWDYMNINE 240

Query: 242 LHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKI 297
           +   F + +    ++    P  +  G   + I D R       E     ++  + +P   
Sbjct: 241 MPTLFAEVIGDAKKDAIIGPIKSGSGFHILKIMDIRGLQTREIEEVRARHILLKPSPILS 300

Query: 298 EKHEAEYVKK 307
           E+     + +
Sbjct: 301 EERAKAMLDQ 310



 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/292 (10%), Positives = 83/292 (28%), Gaps = 29/292 (9%)

Query: 49  EVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
           E IT G+I +     ++Q    E+  +    +I E   K    + G        N    +
Sbjct: 136 EEITLGEIQRIQVQRRIQVSPQEINNLVK--MIEEQGNKDVEYQIGHILIEVPSNPTSAE 193

Query: 109 HARNTGLSAEDFSSFLDKQGIGD----------------NHFKQYLAIQSIWPDVVKNDF 152
               +  +                                 +     + +++ +V+ +  
Sbjct: 194 LESASKRAQAVMDRLNSGNDFRSIAIAASSGPKALEGGVWDYMNINEMPTLFAEVIGDAK 253

Query: 153 MLKY-------GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
                          +    + + ++   + E   R +L        + +       +  
Sbjct: 254 KDAIIGPIKSGSGFHILKIMDIRGLQTREIEEVRARHILLKPSPILSEERA-KAMLDQFV 312

Query: 206 EESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVT 263
            + +    K  +   +++         G+  +   +   P+F  +  + S +  + P+ T
Sbjct: 313 TQIKSGEAKFADIARQYSEDPGSATKGGELGWAEPNIYVPEFAQMLGQLSLDEISAPFRT 372

Query: 264 QKGVEYIAICDKRDLGGEIA-LKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             G   + + +KR                    K  +    ++ ++RS A I
Sbjct: 373 AHGWHIVQLEEKRKTDATEKFNTNRAHQLIFRRKFNEELQGWLDEIRSEAHI 424


>gi|319405490|emb|CBI79109.1| Peptidyl-prolyl cis-trans isomerase [Bartonella sp. AR 15-3]
          Length = 318

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 72/317 (22%), Positives = 121/317 (38%), Gaps = 9/317 (2%)

Query: 9   LSDFIKLLTTYFVLIIF---CIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
           ++         F +        + I         + +  T+NG  IT  DI +RIA LKL
Sbjct: 1   MNILKNSALALFCITFLSVSISISIFFTSQAFAQTSVVVTVNGSAITSYDIQRRIAFLKL 60

Query: 66  QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
           Q+  G L   A  ELI ETLK  EI++  I    + +   F   A    ++ E  S  L 
Sbjct: 61  QQRQGNLAVQAKNELIDETLKNNEIKRRNIEVSKDELESAFENFATQNNMTVEQLSQMLT 120

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
           +  +   HFK Y+  Q  W  +V   +  + G L  +   ++              T+  
Sbjct: 121 QTDVTVEHFKAYILGQMGWGRLVNARYQAEGGILTEQEAVHRILKNGGVKPSTNEYTLQQ 180

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ 245
            I       +  + ++            + CN  +     I D++I      LE  L   
Sbjct: 181 IIFVIPEHRRSAILEKRIKEANQFRANFRGCNSAKHQVKGILDITIRHLGKFLEPQLPRN 240

Query: 246 FQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK-----IEK 299
           ++  +  +     TN   TQ+G+E IA+C  + +  +   +   S Q+   K     +E 
Sbjct: 241 WEKAILATPAGKMTNLQETQRGIEAIAVCQIKRVSDDRVARLIFSIQDHQKKDIPQLLEA 300

Query: 300 HEAEYVKKLRSNAIIHY 316
              +Y+K+LR  A I  
Sbjct: 301 ISEKYLKELRQTARIQN 317


>gi|268597648|ref|ZP_06131815.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae FA19]
 gi|268551436|gb|EEZ46455.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae FA19]
          Length = 333

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 88/292 (30%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKL------QKINGELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT+  +++ +A  K       Q    EL +  + +L+ ++L  Q  ++
Sbjct: 56  SDGIAAVADNEVITNRRLAEAVAEAKATLPEDAQISESELSRQVLMQLVNQSLIVQAGKR 115

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    Q+     LS                     LA   I   V +   
Sbjct: 116 RNIQASEAEIDAVVAQNPALKNLSPTQRR---------------ELADNIIAEKVRQQAV 160

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 161 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 220

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
           +             +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 221 DQARNGTDFTGLARRYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 280

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    E  ++  +       K  +     ++ L S A +  
Sbjct: 281 GWHIIKLNEVRDAGTPEERIRNSVRQYIFQQKAGQATVNLLRDLHSGAYVDI 332


>gi|205375588|ref|ZP_03228375.1| protein secretion (post-translocation chaperonin) [Bacillus
           coahuilensis m4-4]
          Length = 301

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 32/300 (10%), Positives = 88/300 (29%), Gaps = 26/300 (8%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELI 81
           ++    + +V   S++        ++GE I+  ++  R+          + +   +  +I
Sbjct: 7   ILAVIALAVVIAMSFSKGGETVAEVDGEKISKEELYDRLV--------EQDQGATLNAMI 58

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
            E L  +E +  G+      +N          G      +                +   
Sbjct: 59  SEVLIMKEAKDQGVEASDEEINEELETLYGMYGGEEAFTNQIEAS-----GMSLDEVKDD 113

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
                        +    + EI       K    ++  ++     + D +  N       
Sbjct: 114 ITLFIYSNKLMEDRIEVTDEEIQEYFDANKASFDQQEQVKASHILVEDEETAN------- 166

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTN 259
             + ++             ++++        G   +  +  + P+F+         + T 
Sbjct: 167 --EVKQKLDEGGDFAELAAEYSTDTSNASQGGDLGFFGKGQMVPEFEEAAFGAEVGSITG 224

Query: 260 PYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           P  T  G   I + +K++        +K  +       K ++    ++++L+    I  Y
Sbjct: 225 PVQTDFGYHIIKVEEKQEAKEATLEDVKEEVRETIKQQKQQQEYPVWIEELKGKHDIKNY 284


>gi|218768937|ref|YP_002343449.1| putative rotamase [Neisseria meningitidis Z2491]
 gi|121052945|emb|CAM09299.1| putative rotamase [Neisseria meningitidis Z2491]
          Length = 347

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 87/292 (29%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT   +++ +A  K            EL +  + +L+ ++L  Q  ++
Sbjct: 70  SDGIAAVADNEVITRRRLAEAVAEAKANLPKDAQISESELSRQVLMQLVNQSLIVQAGKR 129

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    +++    LS                      A   I   V +   
Sbjct: 130 RNIQASEAEIDAVVAKNSALKNLSPAQRR---------------DFADNIIAEKVRQQAV 174

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 175 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 234

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
                     +   +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 235 GEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 294

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    +  ++  +       K E+     ++ L S A +  
Sbjct: 295 GWHIIKLNEVRDAGTPQERIRNSVRQYIFQQKAEQATVNLLRDLHSGAYVDI 346


>gi|322419887|ref|YP_004199110.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
 gi|320126274|gb|ADW13834.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
          Length = 446

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 84/288 (29%), Gaps = 15/288 (5%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGEL---------EKIAVQELIVETLKKQEIEKS 93
              +NG VIT   + + + ++  Q    E          E  A+ +L    L  QE  K 
Sbjct: 157 VLRVNGSVITKQALDRAVKVMLAQNQVKEPLSPEAQKEAEAAALDQLTSAELLYQEASKL 216

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
            +      +     Q+       AE   +         +          I   + +    
Sbjct: 217 DMPELDKQIEEKVAQNRAKFKTDAEFIEALKSIDMTMQDMQDFTRRDLMINHFIEQKFIA 276

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR-- 211
                        ++ +     +   +R     +  ++       +K  + AE    R  
Sbjct: 277 KAVITDAEAKKFYEENLDRYFKKPESVRASHILVGSDEKATPEERKKAKEKAEALLKRVK 336

Query: 212 -LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEY 269
                    +  +S       G         + P F+       Q  T+    ++ G   
Sbjct: 337 AGEDFAAIAKAESSCPSASQGGDLGTFGRGQMVPAFEKAAFALKQGETSGVVESEFGYHI 396

Query: 270 IAICDKRDLGG--EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           I + +K++ G       K  ++      K++K    Y+ +L+ +A I 
Sbjct: 397 IKVTEKQEAGAEKFENAKDKIADFLKKQKVQKELISYIDQLKKSAKIE 444


>gi|304413706|ref|ZP_07395150.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Candidatus Regiella
           insecticola LSR1]
 gi|304283797|gb|EFL92191.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Candidatus Regiella
           insecticola LSR1]
          Length = 434

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 110/309 (35%), Gaps = 16/309 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   I     + +   + +    +N +VI   DI   +  +K              +L
Sbjct: 7   LILSMVIFTHAGFAASQQTDKSAAIVNSKVILQSDIDTLLQSVKFSAEQADQPIPDEKQL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI+  ++ Q  +K G+T   + ++      A    ++ +   S L K+GI   
Sbjct: 67  RHQIIESLIMNDIQLQMAQKMGMTISESHLDNAIANIAAQNHMTIDQLRSRLAKEGINYQ 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++ ++  +    +V  N+   +   L  E+ +  Q++   T     +      I   + 
Sbjct: 127 TYRTHIRNEMQISEVRNNEVRRRIKILPQEVESLAQQLAAQTGGNTELNISHILISLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLE---KFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            +     +  K AE+    +  D +  +     +S    +  G+  +   ++L   F + 
Sbjct: 187 ASVQQKDQAEKKAEKIVAEIKSDKSFAKLAIAHSSDSQALKGGQMGWSKLAELPRLFAEQ 246

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE----IALKAYLSAQNTPTKIEKHEAEY 304
           L   ++ +   P  +  G   + + D R    +         ++  + +    +K     
Sbjct: 247 LKTANKRDIIGPIRSGVGFHILKVNDIRKADKKISITEMRVRHILLKPSVMMTDKQAQAK 306

Query: 305 VKKLRSNAI 313
           ++ +R    
Sbjct: 307 LQSVRQKIK 315



 Score = 75.9 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/278 (11%), Positives = 73/278 (26%), Gaps = 13/278 (4%)

Query: 50  VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
            I   ++      L  Q        I+   LI         +K      +  +       
Sbjct: 151 KILPQEVESLAQQLAAQTGGNTELNIS-HILISLPENASVQQKDQAEKKAEKIVAEIKSD 209

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-------FMLKYGNLEME 162
                L+    S     +G      K     +     +   +            G   ++
Sbjct: 210 KSFAKLAIAHSSDSQALKGGQMGWSKLAELPRLFAEQLKTANKRDIIGPIRSGVGFHILK 269

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +   ++  K I++ E  +R +L          Q    K     ++ +           + 
Sbjct: 270 VNDIRKADKKISITEMRVRHILLKPSVMMTDKQAQ-AKLQSVRQKIKSGKTDFAAVAREI 328

Query: 223 ASKI-HDVSIGKAQYLLESD--LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
           +         G   ++   D         L    +   + P  +  G   I + D R + 
Sbjct: 329 SEDPGSAQQGGDLGWISPDDRYDPTFLNELASLKKGAISPPVRSSLGWHLIQLIDSRTVD 388

Query: 280 -GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             +  LK          K  +    +++++R+ A +  
Sbjct: 389 RTDEMLKEQAYRMLIKRKFSEELQPWMQEIRAAAYVKI 426


>gi|78485996|ref|YP_391921.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomicrospira
           crunogena XCL-2]
 gi|121956485|sp|Q31F26|SURA_THICR RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|78364282|gb|ABB42247.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomicrospira
           crunogena XCL-2]
          Length = 451

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 38/299 (12%), Positives = 98/299 (32%), Gaps = 14/299 (4%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMS--SRIRTTINGEVITDGDISKRIALLKLQ 66
           +   I       + I+F + P  ++ +   +   R+   +N  +I   ++   + L K  
Sbjct: 1   MKKIIPTNLFKLISILFILTPFFAWSAPQETLIDRVVAVVNDNIILKSELDAEVNLAKQD 60

Query: 67  --------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG-LSA 117
                       EL    + ++I+E L+ Q I + GI    + +     + A+       
Sbjct: 61  LQARNIPVTNPEELASKVLDKIILERLQLQRINQLGIKIADDELFSQIQEIAKQNNLTVI 120

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
           E        Q  G   F++ +  Q ++  + + + + K    E E+    Q+   +    
Sbjct: 121 ELRDRLNMSQKNGFESFRERIRQQMLFQKLREVEVLSKTQVTEDEVSNFIQRQALVQSDV 180

Query: 178 YLIRTVLFSIPDNKL--QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
                 +            +   +++ ++  +             +++     +  G   
Sbjct: 181 EYHLGHIMVSLPESATPDQRDASKQKAQEILQKIRTGGDFSQMAVRYSEGSKALQGGDLG 240

Query: 236 YLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNT 293
           +L    +   F +   +     T++   +  G   I +  KR+   +I  + +L     
Sbjct: 241 WLGIDQIPTFFNDALNQLEIGETSDVIRSPVGFHIIQLQGKRNKNSQIVKQYHLYRFIL 299



 Score = 59.7 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 57/167 (34%), Gaps = 4/167 (2%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                G   +++   + K   I  + +L R +L S      Q       ++ ++  S   
Sbjct: 267 IRSPVGFHIIQLQGKRNKNSQIVKQYHLYRFILLSEDAQNKQQPSPTLVKLAESLNSLES 326

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
             +   K     + ++    G   +    ++ P++   ++     +   P+ T+KG   +
Sbjct: 327 FKQLNEKYSDIPASVNAN--GNLGWQTAKEMSPEYYQAIEALQPGHAAKPFATEKGWVIL 384

Query: 271 AICDKRDLG-GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            +   RD        +          K  +    ++++L+  A+I  
Sbjct: 385 FLDGIRDQDLSLKDKRKQAMQTLRMKKANESYEIWLRRLKDEALIDI 431


>gi|288940552|ref|YP_003442792.1| SurA domain-containing protein [Allochromatium vinosum DSM 180]
 gi|288895924|gb|ADC61760.1| SurA domain protein [Allochromatium vinosum DSM 180]
          Length = 446

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 94/274 (34%), Gaps = 15/274 (5%)

Query: 53  DGDISKRIALLKLQKI--------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
             ++ + IAL+  Q            +L K  +  LI++ L++Q  ++ G+  D  T+  
Sbjct: 56  QSELEREIALVIPQLNQRGTAIPPPEQLRKQVLDRLILKHLQQQRAKELGLKVDEATLEE 115

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
                A   GLS ++  + L+  GI    F++    Q +   +   + + K    E E+ 
Sbjct: 116 ALQGIAGRNGLSLDELKATLEAGGIRFEDFREDTRSQILSSRLQNQEVVRKIQVSEPEVD 175

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE---K 221
               +  +  +    +R     I   +      V++    A+    RL    +      +
Sbjct: 176 RFLAREASRLIEREQVRLQHILIALPENPTPEQVKRAEDKAKGLVERLRSGADFAAVAVR 235

Query: 222 FASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
            +   + +  G   +     +     +     ++   + P  +  G   I + + +    
Sbjct: 236 ESDGRNALEGGDLGWFEMGAVPSLVSDLAYTLAEGEVSEPLRSPSGFHIIRMREIKAAAP 295

Query: 281 EIALK---AYLSAQNTPTKIEKHEAEYVKKLRSN 311
           E   +    ++  +      +    + + +LR  
Sbjct: 296 EDVTQTRARHILIRTNEIVSDADARQRLLQLRER 329



 Score = 95.5 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 49/141 (34%), Gaps = 3/141 (2%)

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYL 237
             R     I  N++ +    ++R+    E  +            +      +  G+  ++
Sbjct: 300 QTRARHILIRTNEIVSDADARQRLLQLRERIIGGEDFAGLARAHSDDTGSALKGGELGWV 359

Query: 238 LESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPT 295
                 P+F+  +   +   T+ P+ +  G   + + ++R       + +          
Sbjct: 360 DPGKTVPEFEEQMNALAVGATSEPFKSPFGWHILQVEERRQQSANEDILRLKAREALQRR 419

Query: 296 KIEKHEAEYVKKLRSNAIIHY 316
           K E+   E++++LR  A +  
Sbjct: 420 KAEEATEEWLRQLRDEAYVEI 440


>gi|222148150|ref|YP_002549107.1| hypothetical protein Avi_1539 [Agrobacterium vitis S4]
 gi|221735138|gb|ACM36101.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 315

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 80/291 (27%), Positives = 141/291 (48%), Gaps = 6/291 (2%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKK 87
               +       + +   +N   IT+ D+++RIA LKL+   G++ K A QELI E LK+
Sbjct: 24  FAPATVTPALADTGVAVVVNKTAITNTDLARRIAFLKLRHETGDVAKKARQELIDEQLKR 83

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           QEI + G++  +  V+  F + A +  LS +     LDK G+G  HFK Y+A+Q  WP +
Sbjct: 84  QEIARVGMSVSTMDVDQAFGRFAASNKLSTQQMGQILDKAGVGVEHFKAYIAVQMSWPRL 143

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           V   +  +      ++     + K   V                 +      KR  +AE 
Sbjct: 144 VNARYASRSKMSNQDMVTRLLENKQKPVTTEYT-LKQVIFVVPVAKRATLTAKRKAEAEA 202

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGV 267
           SR + P   ++   FA    DVSI     +++ +L   ++ L++ +   TT   VT++G+
Sbjct: 203 SRAKFPGC-DQAMDFAKNYLDVSIRDLGRVMKPELPDDWKPLIEGANGTTTGTRVTERGI 261

Query: 268 EYIAICDKRDLGGEIALKAYLSAQNTPT----KIEKHEAEYVKKLRSNAII 314
           EY+AIC+++ +  ++A +A   A++       K + +  +Y+ +LRS A I
Sbjct: 262 EYLAICNQKQVSDDLAAEAVFKAEDIGKEDKSKGDPNSEKYLTELRSKAQI 312


>gi|304320041|ref|YP_003853684.1| peptidyl-prolyl cis-trans isomerase family protein [Parvularcula
           bermudensis HTCC2503]
 gi|303298944|gb|ADM08543.1| peptidyl-prolyl cis-trans isomerase family protein [Parvularcula
           bermudensis HTCC2503]
          Length = 421

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 111/306 (36%), Gaps = 12/306 (3%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K L   +V +I   +      +  +  R+   +N + I+  D+ +RI L+ + +    L
Sbjct: 1   MKRLAILWVTLILTGLTAP-LANAQVGERVAAVVNDDPISTFDVRQRIQLIIVTEGMRNL 59

Query: 73  EKIAVQE--------LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
            + A+ +        LI E LK QE E+  +T     ++    Q A   G + +  +  L
Sbjct: 60  PQEALAQLQGRALRELIEERLKLQEAERFELTIPDEAIDAELEQLAGQAGTTVQQLTEDL 119

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
              G+     +  +  +  W  +V+  +  +    +  +      ++     +  + + +
Sbjct: 120 ATAGVNIGTLRDRIQAEQAWQQLVRGRYGPRVSITDDAVETMLDDLELSARSDQYLISEI 179

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
                 + ++Q  + +      E   R        +++++       G   +L   +L  
Sbjct: 180 CLPVT-RQEDQPEMYQAGMQMIEQLRRGVPFGALAQQYSACSSAARGGDLGWLRADELDQ 238

Query: 245 -QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD-LGGEIALKAYLSAQNTPTKIEKHEA 302
                + + S+ N + P   +  ++ +A+   R+             A    +  E+   
Sbjct: 239 TTLDIVQQLSEGNVSRPIPLRGVIKIVALRQTREAATAGEPSYQVAYAGAPASLGEEVAK 298

Query: 303 EYVKKL 308
           + + +L
Sbjct: 299 QRLARL 304


>gi|189345572|ref|YP_001942101.1| SurA domain [Chlorobium limicola DSM 245]
 gi|189339719|gb|ACD89122.1| SurA domain [Chlorobium limicola DSM 245]
          Length = 437

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 92/274 (33%), Gaps = 11/274 (4%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN---- 69
           K++TT   LI+ C+  I      A++ RI   I  EV+   ++ +R+ +  +Q       
Sbjct: 3   KVMTTVCALILLCMPFISGTAVAAIADRIVAVIGNEVVLQSELDERVLMTHMQYPESKGD 62

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
             L +  +  LI + +   + +      D   +     +  +              + G 
Sbjct: 63  KTLPEKVLNSLIDQKVILAKAKIDSTGIDDAALEGLVGERMKVLASRFSSREEMESRFGK 122

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLK-----YGNLEMEIPANKQKMKNITVREYLIRTVL 184
                ++ L  +     ++++    K       + E        K +   + E +  + +
Sbjct: 123 SSLVIRRELRQEIKNQQLIESLRRKKLSGVTVTHEESMAFYEANKSRLPVIPEGVSVSQI 182

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLH 243
              PD   +++   +  I+  +             +K++         G   Y+ + +L 
Sbjct: 183 LKYPDVTAESRSGAKAMIEKVQAELKGGADFGALAKKYSQDPGSAQLGGDLGYVQKGELI 242

Query: 244 PQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR 276
             F+N      +   +    T+ G   I + +K 
Sbjct: 243 QSFENAAYGLKEGQVSGVVETRYGFHLIQLLNKE 276



 Score = 45.1 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 46/159 (28%), Gaps = 16/159 (10%)

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVS 230
           N  V    +R +L +   ++    G +        +             K++        
Sbjct: 274 NKEVNSLHVRHILVAFDRSRSDAAGTIGLLRSIRADVLAGKATFAEMAGKYSDDPVSARL 333

Query: 231 IGKA------QYLLESDLHPQFQNLLK--KSQNNTTNPYVT--QKG---VEYIAICDKRD 277
            G             S L PQ + ++   K   + + P      +G        + +K  
Sbjct: 334 GGAILSASSKNVFQLSTLRPQLREVIGTLKQSGDISEPVKVDPPQGDSFYAIFRLNEKIG 393

Query: 278 LGGEIALKAY--LSAQNTPTKIEKHEAEYVKKLRSNAII 314
                  + Y  L       K ++   E++++LR    +
Sbjct: 394 SHQLNPRQDYALLEEIVLENKRQRLYEEWLQELRKEITV 432


>gi|110634111|ref|YP_674319.1| putative survival protein surA precursor (peptidyl-prolyl cis-trans
           isomerase SurA) [Mesorhizobium sp. BNC1]
 gi|110285095|gb|ABG63154.1| putative survival protein surA precursor (peptidyl-prolyl cis-trans
           isomerase SurA) [Chelativorans sp. BNC1]
          Length = 312

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 65/281 (23%), Positives = 125/281 (44%), Gaps = 3/281 (1%)

Query: 36  WAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGI 95
              ++ IR  +N   IT  DI +R ALL+L +  G + ++A +E+I +TL++QE+ +SG+
Sbjct: 30  PVDATEIRYVVNDRPITSFDIERRAALLRLMQRKGNVNELAAEEMIDQTLRQQEMARSGV 89

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
                 V+  +   A +  ++       L + G+G  HFK+++  Q  W  V+++     
Sbjct: 90  NITQAMVDESYRNFAGSNNMTVAQLDQILGQAGVGKEHFKEFIRTQIGWGRVMQSRSRSG 149

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
               E ++     +                       Q    + KR ++A+  R R    
Sbjct: 150 TILSEQDVVQKMLQQGGQKPTATEYMLQQVIFVVPAAQRGQLLAKRKREAQAMRDRFNGC 209

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPY-VTQKGVEYIAICD 274
            N + +FA  + DV++     +L  +L P++++ +  ++     P   T++GVE+I IC 
Sbjct: 210 ANTV-QFAKGLIDVTVRDMGRVLAPELPPEWKDQISNTRPGNATPIRETERGVEFIGICS 268

Query: 275 KRDLGGEIALKAYLS-AQNTPTKIEKHEAEYVKKLRSNAII 314
            R++  +   +      Q      E    EY+ +LR  A I
Sbjct: 269 AREVSDDHVARMVFQSQQAGDGSFEDAAKEYMAELRKKARI 309


>gi|209883242|ref|YP_002287099.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oligotropha
           carboxidovorans OM5]
 gi|209871438|gb|ACI91234.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oligotropha
           carboxidovorans OM5]
          Length = 301

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 85/298 (28%), Gaps = 47/298 (15%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK---LQKINGELEKIAVQ 78
                 + +++    A  +++   +NG  I   D++     L     Q      +   V+
Sbjct: 23  AACCLALTLMAAPLRADDNQVIAKVNGAEIRQSDVTAAEKDLGPSLAQLDPASRQDSIVR 82

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
            LI   +  +  E   I   ++                                    + 
Sbjct: 83  FLIDLKIVSKAAEDKKIADSADFKRRL------------------------------TFS 112

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
             + +   ++ N+      +  ++    +   +    +E   R +L    D        +
Sbjct: 113 RDRLLMDTLLDNEGKAALTDEALKKVYEEASKQISGEQEVHARHILVETEDEAKAIVAEL 172

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNT 257
           +K                   +K +        G   Y  +  + P+F            
Sbjct: 173 KK-----------GADFAELAKKKSKDPGASDGGDLGYFTKDQMVPEFSTAAFALETGKI 221

Query: 258 TNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           ++P  +Q G   I + DKR           +  Q     I K +A+YV KLRS A + 
Sbjct: 222 SDPVKSQFGWHIIKVEDKRARKA--PPFEQVKPQLEAFVIRKAQADYVAKLRSEAKVE 277


>gi|304389108|ref|ZP_07371152.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis ATCC
           13091]
 gi|304336981|gb|EFM03171.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis ATCC
           13091]
          Length = 348

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 87/292 (29%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT   +++ +A  K            EL +  + +L+ ++L  Q  ++
Sbjct: 71  SDGIAAVADNEVITRRRLAEAVAEAKANLPKDAQISESELSRQVLMQLVNQSLIVQAGKR 130

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    +++    LS                      A   I   V +   
Sbjct: 131 RNIQASEAEIDAVVAKNSALKNLSPAQRR---------------DFADNIIAEKVRQQAV 175

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 176 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 235

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
                     +   +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 236 GEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 295

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    +  ++  +       K E+     ++ L S A I  
Sbjct: 296 GWHIIKLNEVRDAGTPQERIRNSVRQYIFQQKAEQATVNLLRDLHSGAYIDI 347


>gi|13476523|ref|NP_108093.1| hypothetical protein mll7863 [Mesorhizobium loti MAFF303099]
 gi|14027284|dbj|BAB54238.1| mll7863 [Mesorhizobium loti MAFF303099]
          Length = 310

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 67/312 (21%), Positives = 123/312 (39%), Gaps = 11/312 (3%)

Query: 9   LSDFIKLLTTYFVLIIFCI--VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ 66
           +    K L +    ++     V +      A +S I+  +N   IT GDI+ R A LKLQ
Sbjct: 1   MLMMRKYLFSAGFALLVAATSVSMTVMTPPAFASEIKYVVNDIPITTGDIAHRAAFLKLQ 60

Query: 67  KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
           +  G+    A QE+I +TL+  E  + GI      V   + + A N  +        ++K
Sbjct: 61  RKKGD----AAQEMIDQTLRLAEARRLGIRISDAQVEAAYQRFATNNKMQLGQLDGVMEK 116

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKY--GNLEMEIPANKQKMKNITVREYLIRTVL 184
            G+G +HFK+++  Q  W   +   +         E +                      
Sbjct: 117 SGVGKDHFKEFIRAQMAWNQALSARYRSGEGGSVTEQDAVRRMLDKGGAKPSATEYMLQQ 176

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
                   +    + KR ++A+  R R         +FA  + DV++     +L   L P
Sbjct: 177 VIFVVPASERSATLAKRKREADAMRARFNGCNTT-REFAKGLIDVTVRDLGRVLAPQLPP 235

Query: 245 QF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK-IEKHEA 302
            + + +        T    T++GVE+I IC  R++  +   +    ++ +  K  +    
Sbjct: 236 DWAEQIKATKVGGATVTRETERGVEFIGICSSREVSDDKTAQMVFQSEGSNDKAADDLSK 295

Query: 303 EYVKKLRSNAII 314
           +YV +L++ A I
Sbjct: 296 KYVDELKAKARI 307


>gi|91203827|emb|CAJ71480.1| similar to peptidyl-prolyl cis-trans isomerase (survival protein
           SurA precursor) [Candidatus Kuenenia stuttgartiensis]
          Length = 333

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 96/288 (33%), Gaps = 8/288 (2%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL---EKIAVQELIVETLKKQEIE 91
               S ++  TINGE IT  ++ + +   K Q     +   EK  +  L+ + L  Q I+
Sbjct: 47  QIGDSKKVVATINGESITKAEVERVLERFKNQLPPDRIASVEKQIIDGLVAQKLFLQFIK 106

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
           K+ I    + +     +   +  L+       L++         + L         ++  
Sbjct: 107 KNKIAIGDDALKTELDKVREDIKLNPGLQGKSLEEVLESHGSNIEDLKRDITISLSLEKY 166

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
           F     + +++    K +             ++ +      ++    +++I+  +     
Sbjct: 167 FADTVSDAKVKDYFEKNRQIYDGTEVQASHILVDTRNLQGEEDLAKAKQKIEKVKAEIAE 226

Query: 212 LPKDCNK-LEKFASKIHDVSIGKAQYL-LESDLHPQF-QNLLKKSQNNTTNPYVTQKGVE 268
             KD  K  E+++        G   Y   +  +   F +          ++   TQ G  
Sbjct: 227 GKKDFAKLAEEYSDCPSSKKGGDLGYFVRKGQMVEPFAEAAFALKVGEVSDVVTTQFGYH 286

Query: 269 YIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            I + D +  G        L  +     ++++    + +L+  A I  
Sbjct: 287 IIKVTDIKKGG--EIDFNELKPEIKLDILKQNADSLLDRLKQQAKIEI 332


>gi|316985214|gb|EFV64166.1| PPIC-type PPIASE domain protein [Neisseria meningitidis H44/76]
          Length = 359

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 86/292 (29%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT   +++ +A  K            EL +  + +L+ ++L  Q  ++
Sbjct: 82  SDGIAAVADNEVITRRRLAEAVAEAKANLPKDAQISESELSRQVLMQLVNQSLIVQAGKR 141

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    ++     LS                      A   I   V +   
Sbjct: 142 RNIQASEAEIDAVVAKNPALKNLSPAQRR---------------DFADNIIAEKVRQQAV 186

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 187 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 246

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
                     +   +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 247 GEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 306

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    +  ++  +       K E+     ++ L S A +  
Sbjct: 307 GWHIIKLNEVRDAGTPQERIRNSVRQYIFQQKAEQATVNLLRDLHSGAYVDI 358


>gi|161870782|ref|YP_001599955.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis 053442]
 gi|161596335|gb|ABX73995.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis 053442]
          Length = 353

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 86/292 (29%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT   +++ +A  K            EL +  + +L+ ++L  Q  ++
Sbjct: 76  SDGIAAVADNEVITRRRLAEAVAEAKANLPKDAQISESELSRQVLMQLVNQSLIVQAGKR 135

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    ++     LS                      A   I   V +   
Sbjct: 136 RNIQASEAEIDAVVAKNPALKNLSPAQRR---------------DFADNIIAEKVRQQAV 180

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 181 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 240

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
                     +   +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 241 GEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 300

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    +  ++  +       K E+     ++ L S A +  
Sbjct: 301 GWHIIKLNEVRDAGTPQERIRNSVRQYIFQQKAEQATVNLLRDLHSGAYVDI 352


>gi|319407065|emb|CBI80702.1| Peptidyl-prolyl cis-trans isomerase [Bartonella sp. 1-1C]
          Length = 319

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 115/292 (39%), Gaps = 6/292 (2%)

Query: 31  VSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEI 90
                    + +  T+NG  IT+ DI +RIA LKLQ+  G L   A  +LI E LK  EI
Sbjct: 27  FFTSQAFAQTSVVVTVNGNAITNYDIQRRIAFLKLQQKQGNLATQAKNDLIDEVLKNNEI 86

Query: 91  EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
           ++  I    + V   F   A    ++ +  +  L +  +   HFK Y+  Q  W  +V  
Sbjct: 87  KRRNIEVSKDEVENAFENFAAQNNMTVDQLNQMLTQTDVTVEHFKAYIWGQMGWGRLVNA 146

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
            +  + G +  +  + +              T+   I          + ++ K       
Sbjct: 147 RYQAEGGVITEQEASQRILKNGGVKPSTNEYTLQQIIFVIPEHRWSAILEKRKKEANKFR 206

Query: 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEY 269
              + CN  +  A  I D++I      LE  L   ++  +  +     TN   TQ G+E 
Sbjct: 207 ANFQGCNSAKNQAKGILDITIRHLGKFLEPQLPQNWEKAILATPAGKMTNFQETQNGIEA 266

Query: 270 IAICDKRDLGGEIALKAYLSAQNTPTK-----IEKHEAEYVKKLRSNAIIHY 316
           +A+C  + +  +   +   S Q+   K     +E    +Y+K+LR  A I  
Sbjct: 267 VAVCQIKRVSDDRVARLIFSIQDHQKKDIPQLLEALSEKYLKELRQTARIQN 318


>gi|33152289|ref|NP_873642.1| peptidyl-prolyl cis-trans isomerase [Haemophilus ducreyi 35000HP]
 gi|33148512|gb|AAP96031.1| survival protein SurA-like protein [Haemophilus ducreyi 35000HP]
          Length = 317

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 107/316 (33%), Gaps = 15/316 (4%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +KL +   +L+       +S  + A    +  T+N   + +  +    +LL  QK +   
Sbjct: 1   MKLNSAKSLLVALVTAVSLSQSAMAWEEHVVATVNNIPVMESQVQ---SLLGQQKNSKTD 57

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            K+A++ +I + L ++ I  +GI  D   V+      A + G++       +D QGI  +
Sbjct: 58  RKMAIEHIIDDILVQKTIADAGIQVDYKLVDKAIEDIAASNGITYGQLLDAIDNQGISLD 117

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI---------PANKQKMKNITVREYLIRTV 183
            ++  +A Q     V              E+             +     ++      + 
Sbjct: 118 QYRGQIAQQMAMEQVRHMSISQSIQLDPNEVQTLAKKMLEEDKAKGKLKKSMGTQYRISH 177

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL 242
           +       L +     K ++ A + +          +  +         G   Y      
Sbjct: 178 ILIKTTPVLNDAKAKAKLMRIAADIKAGKTTFEQAAKANSIDYISAADGGDLGYNFLDIY 237

Query: 243 HPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKH 300
            P F +   K  QN  + P+ +Q G   + +   +                    + ++ 
Sbjct: 238 DPTFAKIANKAKQNQISAPFKSQFGWHILKVTATQKADRTEDSYNQFAYELLANQQGQEI 297

Query: 301 EAEYVKKLRSNAIIHY 316
             ++VK LRS+A I Y
Sbjct: 298 AKDWVKILRSSADIQY 313


>gi|294139570|ref|YP_003555548.1| survival protein surA [Shewanella violacea DSS12]
 gi|293326039|dbj|BAJ00770.1| survival protein surA [Shewanella violacea DSS12]
          Length = 434

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 36/314 (11%), Positives = 105/314 (33%), Gaps = 15/314 (4%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI---- 68
           +K      +  +      +         R+   +N  ++ + +I+  +  +K        
Sbjct: 1   MKPCKHLIIAFLTLASSHMVQAENTPLDRVSVQVNEGIVLESEITNMVTTVKTNASAAGQ 60

Query: 69  ----NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
               +  L    ++ LIV  L+ Q  ++ G+      ++      A++  L+ +     +
Sbjct: 61  SLPSDQALRTQVIERLIVTRLQMQMADRIGLHIGDLQLDQTIGNIAKDQKLTVDQMKHKI 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
             +G+  +H+++ L  +    ++ +     +      EI      ++   +++   +   
Sbjct: 121 GGEGMSWSHYREQLREEMTLGEIQRIQVQRRIQVSPQEINNLVNMIEEQGLKQTEFQIGH 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESD 241
             I          ++K    A +   R+    +        ++    +  G   Y+  ++
Sbjct: 181 ILIEIPNDPTSEQLEKASNRANKVLERVKDGGDFRRTAIAASAGPKALEGGIWDYMNINE 240

Query: 242 LHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK---AYLSAQNTPTKI 297
           +   F + L    + +   P  +  G   I + D R L  +   +    ++  + +P   
Sbjct: 241 MPTLFAEVLSDAKKGDIIGPIRSGAGFHIIKVIDARGLQTKEVKEVRSRHILIKPSPILS 300

Query: 298 EKHEAEYVKKLRSN 311
           E+     + K    
Sbjct: 301 EERAKAMLDKFVKQ 314



 Score = 79.3 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/294 (10%), Positives = 81/294 (27%), Gaps = 27/294 (9%)

Query: 49  EVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGI---TFDSNTVNYF 105
           E +T G+I +     ++Q    E+  +    +I E   KQ   + G       ++  +  
Sbjct: 136 EEMTLGEIQRIQVQRRIQVSPQEINNLV--NMIEEQGLKQTEFQIGHILIEIPNDPTSEQ 193

Query: 106 FVQHARNTGLSAEDFSS--------FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
             + +       E                 G        +  +       +  + +    
Sbjct: 194 LEKASNRANKVLERVKDGGDFRRTAIAASAGPKALEGGIWDYMNINEMPTLFAEVLSDAK 253

Query: 158 NLEME-----------IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
             ++            I     +       + +    +   P   L  +       K  +
Sbjct: 254 KGDIIGPIRSGAGFHIIKVIDARGLQTKEVKEVRSRHILIKPSPILSEERAKAMLDKFVK 313

Query: 207 ESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQ 264
           + R           K++         G+  +   +   P F Q L   + N+ + P+ + 
Sbjct: 314 QLRAGDADFAALAHKYSEDPGSAAKGGELGWADPTVYVPAFSQTLKGLNVNDISEPFRST 373

Query: 265 KGVEYIAICDKRDLGGEIA-LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            G   + + ++R                    K  +    ++ ++R+ A I  +
Sbjct: 374 HGWHIVQLEERRTTDATAKFNTNKAHQLIYRRKFNEELQTWLDEMRAEAYIEVF 427


>gi|116620640|ref|YP_822796.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116223802|gb|ABJ82511.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 342

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 44/333 (13%), Positives = 110/333 (33%), Gaps = 32/333 (9%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K +   F   +  +   ++    +  + +   ++   IT+ D+ K       Q+  G  
Sbjct: 1   MKRIFVVFAAGVAALT--LASCKHSPPANVAAEVDNHAITNSDLEKTYQSQYAQQSEGAS 58

Query: 73  EKIAVQE-------LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
           E   + +       +I + +  ++ EK G+      V+            + E+F   L 
Sbjct: 59  EDQILTQKLDLLSSMITQEIMLRKAEKLGLAAVDADVDAEIS--KMRAPYTKEEFEKQLS 116

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV-- 183
            Q +  +  K  +  +     +V  +   K    + ++       K           +  
Sbjct: 117 AQHMTLDDLKLKVRSKLTVDKLVNKEITSKITITDADVKNFYNNNKAAFNLPEPAIHMAQ 176

Query: 184 ----------LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIG 232
                     + ++ ++K QN    + +I+D      R        + ++       + G
Sbjct: 177 ILVTPFPDPNVRNLKNSKAQNDKEARAKIEDILGRLKRGDDFGMLAQNYSEDANSAPNGG 236

Query: 233 KAQYLLESDL----HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG----GEIAL 284
              ++ +SDL        + ++    N  +    T +G   + +  K   G     +  +
Sbjct: 237 DMGFVRQSDLEKVNPELRKMVISLPPNGVSPIIPTPEGYRILKVISKEPAGQRELNDPRV 296

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           +  +      +K +   A Y +  R++A I  Y
Sbjct: 297 QQNIRDTLLNSKDQLLRAAYYETARNDAKIQNY 329


>gi|317485407|ref|ZP_07944286.1| SurA domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316923366|gb|EFV44573.1| SurA domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 308

 Score =  115 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/312 (14%), Positives = 104/312 (33%), Gaps = 23/312 (7%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI----------- 68
            V   F +  +++    A  + +   +NGE+IT  D+    A   +++            
Sbjct: 3   IVSTAFLLFFLITSPVRAAINGVAAVVNGEMITAFDLQAETAPEAMRRGLNPKDPNQAAA 62

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             EL K  ++ +I   +  QE ++  I+   + V+    Q      ++ E+F   L  Q 
Sbjct: 63  IEELTKATLERMINNIILTQEAQRLKISVGDSEVDNEIQQIMSRNKMTPEEFQRQLQIQR 122

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
             +  F++ +    +   ++ N    K    + EI     + K   +    +R  +   P
Sbjct: 123 TTEKDFRERIRSSILRNRLLANMVGRKVIVTKEEIADYYNQHKQTFMNNQKVRFAVIVYP 182

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
             +       + R                   + +        G    +  + L P +Q+
Sbjct: 183 PTENAEAQAARIRSGK--------LSFEQAARQVSVGPRAQEGGDVGVVDWNSLDPTWQD 234

Query: 249 L-LKKSQNNTTNPYVTQKGVE-YIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
              +    + +  +    G++  + +      D          +       K+++   EY
Sbjct: 235 RLSQLKPGDVSGLFEVNNGLKGQLKLLSMESGDGQTLEEATPQIERILREPKLQERFREY 294

Query: 305 VKKLRSNAIIHY 316
            ++LR  A++  
Sbjct: 295 SEQLRKRAVVEI 306


>gi|302343060|ref|YP_003807589.1| SurA domain protein [Desulfarculus baarsii DSM 2075]
 gi|301639673|gb|ADK84995.1| SurA domain protein [Desulfarculus baarsii DSM 2075]
          Length = 327

 Score =  115 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/324 (13%), Positives = 115/324 (35%), Gaps = 21/324 (6%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA----------- 61
           ++ +      +     P+ +  +  + +R+   +  E IT  ++ + I            
Sbjct: 3   LRSVIAGLAFVTMAFAPL-AVLAEELVNRVVAVVGDEPITAAELDRSIQGLLQRLQMMQQ 61

Query: 62  ---LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
                       E+  +A+  LI E L  +E+E+  I+     V+ F  +      ++ +
Sbjct: 62  QQGQNMAMPPAAEVRYMALNSLIDEKLFNKEVERLKISVSEEEVSMFLERLKAANNMTQQ 121

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
           +F + L++ G+    +++ +    +   ++  +   K    + E+     +   +     
Sbjct: 122 EFIARLNETGMTPEEYREKVRNDQLKRKLINYEVKNKVVISDKEVDDYLAEHPELVQGGG 181

Query: 179 LIRTV----LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKA 234
              T+    L    +     +  ++ + +   E  +            +      S GK 
Sbjct: 182 PQLTIQALFLKLPENAGDDVKAQLRAKAEALREEAVDGADFDEMCRANSQGPGAASGGKI 241

Query: 235 QYLLESD-LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD-LGGEIALKAYLSAQN 292
             L +SD L    + L    + + +       GV ++ +    D   G   ++  + A+ 
Sbjct: 242 GPLSKSDLLPEMGKALETMKEGDMSPVLDIPSGVVFMRLISLTDGKEGSAEVRDQVRARL 301

Query: 293 TPTKIEKHEAEYVKKLRSNAIIHY 316
              ++E+   E++K+LR+   I  
Sbjct: 302 ENNQLEERFGEWMKELRAKTYIQI 325


>gi|77361548|ref|YP_341123.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Pseudoalteromonas
           haloplanktis TAC125]
 gi|122070669|sp|Q3IFD3|SURA_PSEHT RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|76876459|emb|CAI87681.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 431

 Score =  115 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/318 (15%), Positives = 111/318 (34%), Gaps = 19/318 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK----- 67
           + L       ++   +   ++ +     ++   +N  VI   ++   +  +K Q      
Sbjct: 1   MNLKKLLTSAVLSISLCQSAFAAPVEIDKVIGIVNQGVILKSEVDTIVNRVKKQAEEQSQ 60

Query: 68  ---INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
               +  L   AV+ L+ +TL  Q  E+ G+    + ++      A+  G S  D    +
Sbjct: 61  ELPKDETLRVQAVERLVNQTLMMQMAERMGLEISDSQLDQTLASMAKEQGGSIADLRRTI 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA--NKQKMKNITVREYLIRT 182
           +  G     +++ +  +     V++ +   +    E E+       + +     EY I  
Sbjct: 121 EGSGESFQAYREEIRKEITTQQVMRANVDRRVYVSEQEVDNLLKIMESQGQNAEEYDIGH 180

Query: 183 VLFSIPDNKLQNQGFVQK-RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
           +L  IP +   ++    K R     E      +        +S    +  G+  ++  ++
Sbjct: 181 ILIDIPSDASADEIASAKTRADKVIELLNDEQEFKRIAISSSSGSQALEGGQLGWMGINE 240

Query: 242 LHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRD---LGGEIALKAYLSAQ----NT 293
           +   F + +  K Q     P  +  G   I + D R    +        ++  +     +
Sbjct: 241 MPSLFAEAVKGKKQGAIIGPLRSGAGFHIIKVQDVRGRQVVETTETRSRHILIKPSIILS 300

Query: 294 PTKIEKHEAEYVKKLRSN 311
             K     A +VK LR++
Sbjct: 301 EEKARSMLAGFVKDLRAD 318



 Score = 76.3 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 79/275 (28%), Gaps = 9/275 (3%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           +++ ++   + +++ Q  N E E      LI         E +     ++ V        
Sbjct: 154 VSEQEVDNLLKIMESQGQNAE-EYDIGHILIDIPSDASADEIASAKTRADKVIELLNDEQ 212

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM-----EIPA 165
               ++    S     +G                  V         G L        I  
Sbjct: 213 EFKRIAISSSSGSQALEGGQLGWMGINEMPSLFAEAVKGKKQGAIIGPLRSGAGFHIIKV 272

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
              + + +          +   P   L  +          ++ R          ++++  
Sbjct: 273 QDVRGRQVVETTETRSRHILIKPSIILSEEKARSMLAGFVKDLRADKADFAKLAKEYSED 332

Query: 226 I-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL-GGEI 282
               +  G+  +   +   P F++ L    QN  + P+ +Q G   + + D R     E 
Sbjct: 333 PGSALKGGEYDWADPTSYVPAFRDTLLSLKQNEISEPFRSQFGWHIVQLLDTRVADKTEQ 392

Query: 283 ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           A +          K ++    + +++R  A +  +
Sbjct: 393 AKRNRAHGMLFNRKFKEESFNWQQEMREQAHVEIF 427


>gi|303326078|ref|ZP_07356521.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio
           sp. 3_1_syn3]
 gi|302863994|gb|EFL86925.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio
           sp. 3_1_syn3]
          Length = 640

 Score =  115 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/403 (9%), Positives = 105/403 (26%), Gaps = 96/403 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + ++   F   +    ++++F    + S+     ++ +   +NG+ I      +  
Sbjct: 1   MLDYIRSNAQSFGVKVAFGVIILVFVFWGVGSFNDRNSAN-VVAIVNGDPILVQQFEQAY 59

Query: 61  AL------------LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
                          + Q     L +  +++LI +TL  QE  ++G++     +     +
Sbjct: 60  RNAEESILRNNPGVTREQLKEQHLGRQVLRDLIQQTLLAQEAARAGVSVTPLELRQAVGR 119

Query: 109 HAR----NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK--------------- 149
                        E ++  L  Q I    +++ ++ Q +   +                 
Sbjct: 120 IKSFQDAQGRFDPEAYTRVLAAQRISPAQYEKDMSDQLLREKIFTLVTAPVWVDPDEAQN 179

Query: 150 ------------------NDFMLKYGNLEMEIPANKQKMKNIT----VREYLIRTVLFSI 187
                              +F  +    + ++ A     K         +    +V    
Sbjct: 180 RYNFLREKRVVDYLFIPAKNFSGEVKVTDQDVTAYYDAHKKDFAIPPKVDVAYVSVTPGG 239

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL---------------------------- 219
                       ++  +A +SR   P                                  
Sbjct: 240 LVKPESISEADAQKWYEANKSRFEEPAQVKAAHILVPLAENAPADAEKKAREEVAKIQAE 299

Query: 220 ----EKFASKIHDVS-------IGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGV 267
               + FA+     +        G+  ++        F++          + P  +  G+
Sbjct: 300 LKSGKDFAAVADAHNGSNAAGPGGELGWITPGKTVKPFEDAAFALKAGQVSEPVRSPFGL 359

Query: 268 EYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
             I + DK+   L         +       +      + +  L
Sbjct: 360 HIIKVEDKKPGGLKTFKDAAREVRQAMAQEQGADKLHDVLDSL 402


>gi|94497694|ref|ZP_01304262.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingomonas sp.
           SKA58]
 gi|94422911|gb|EAT07944.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingomonas sp.
           SKA58]
          Length = 462

 Score =  115 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 87/256 (33%), Gaps = 10/256 (3%)

Query: 44  TTINGEVITDGDISKRIALLKLQK-------INGELEKIAVQELIVETLKKQEIEKSGIT 96
             +NG +IT  D+ +R+AL+               L    ++ LI ETL+ QE   + I 
Sbjct: 74  AIVNGRIITGTDVDQRLALIITANGGKVSDEEKERLRVQVLRNLIDETLQIQEAAANDIK 133

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
                +   + + A N   S  +F ++L  QG      K+ +  +  W  +++ +     
Sbjct: 134 IAPEEIEQSYQRVAANFRKSPTEFDAYLRSQGSSAASIKRQIEGELAWSRLLRRNIQPFV 193

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
              E E+       +    +      +         +NQ  +    ++  +   +     
Sbjct: 194 NVSEDEVK--SVIDRLNAAKGSDEYRIGEIYLSATPENQAQIVANARNIIQQIQQGGSFQ 251

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDK 275
               +F+        G   ++  + L  +      +        P  T  GV  I + DK
Sbjct: 252 AYARQFSEASTAAVGGDLGWIRPAQLPSELAQAAAEMQVGQIAGPIETVGGVSIIYVMDK 311

Query: 276 RDLGGEIALKAYLSAQ 291
           R +       A LS +
Sbjct: 312 RKVLTADPRDALLSLK 327



 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 233 KAQYLLESDLHPQFQNLL-KKSQNNTTNPYVT-QKGVEYIAICDKR-DLGGEIALKAYLS 289
               +   DL PQ Q +L       TT P+ + + GV  + +C +             + 
Sbjct: 375 DNDNVKVRDLPPQLQEILLNLQVGETTPPFGSIEDGVRVLIVCGRDDPASANAPNADQIM 434

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           AQ    ++ K    Y++ LR +A+I Y
Sbjct: 435 AQLEEERVNKRARIYLRDLRRDAVIDY 461


>gi|86747655|ref|YP_484151.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris HaA2]
 gi|86570683|gb|ABD05240.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris HaA2]
          Length = 306

 Score =  115 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/305 (10%), Positives = 83/305 (27%), Gaps = 47/305 (15%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI---SKRIALLKLQKINGE 71
           +++      +   +          ++ +   +NG  I   D+    + +     Q     
Sbjct: 16  IISAAATGCLAFALLASPMARAQDANPVLAKVNGAEIRQSDVTLAEEELGPSLAQMDPAT 75

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
            ++  +  LI   +  +  E   I   +                                
Sbjct: 76  KKENVLSFLIDMKIVAKAAEDKKIADRAEFKKRL-------------------------- 109

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
               ++   + +  D++  +      +  M+        +    +E   R +L    D  
Sbjct: 110 ----EFARNRLLMDDLLGVEGKAATTDEAMKKVYEDAAKQISGEQEVHARHILVETEDEA 165

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLL 250
                 ++K                   +K +        G   +  +  + P+F     
Sbjct: 166 KAIAEELKK-----------GADFAELAKKKSKDPGASDGGDLGFFTKDQMVPEFSAVAF 214

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
                  ++P  +Q G   I + +KR+          +  Q       K +++YV +LR 
Sbjct: 215 ALEPGKISDPVKSQFGWHIIKVEEKRNRKP--PTFDQVKPQIEQYVTRKAQSDYVTQLRQ 272

Query: 311 NAIIH 315
            A + 
Sbjct: 273 AAKVE 277


>gi|85058404|ref|YP_454106.1| peptidyl-prolyl cis-trans isomerase SurA [Sodalis glossinidius str.
           'morsitans']
 gi|121956483|sp|Q2NVX4|SURA_SODGM RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|84778924|dbj|BAE73701.1| survival protein SurA precursor [Sodalis glossinidius str.
           'morsitans']
          Length = 431

 Score =  115 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/319 (11%), Positives = 99/319 (31%), Gaps = 20/319 (6%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +K   T+ + +  C    ++                 ++ + ++   ++ +K        
Sbjct: 1   MKNWRTFILGLALCANGALAAPQVVDKVAAVVD--NGIVLESEVDNMLSTVKHGAQEANQ 58

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L +  +  LI++ +  Q  +++ IT     ++      A    +S +   S L
Sbjct: 59  QLPDDTTLRRQILDRLIMDNIILQLAQRTNITISDEQLDQAIGNIAAQNHMSLDQLRSRL 118

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
              GI  N ++  +  + +  +V   +   +   L  E+ +  Q++   T          
Sbjct: 119 PYDGIDYNTYRTQIRKEMLIAEVRNGEVRRRVTILPQEVESLAQQIAAQTGNGAEFNLSH 178

Query: 185 FSIPDNKLQNQGFVQKRIKD---AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             IP  +   Q  + K  +      E              +++    +  G+  +    +
Sbjct: 179 ILIPLPENPTQDQLDKAEELATSIVEQSKSGADFGKLAITYSADAQALKGGQMGWGKLEE 238

Query: 242 LHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTK 296
           L   F        + +   P  +  G   + + D R     +        ++  + +   
Sbjct: 239 LPSLFAARLQGAQKGSIVGPIRSGVGFHILKVNDIRGGDQKVAVTEVHARHIMLRTSVVM 298

Query: 297 IEKHEAEYVKKLRSNAIIH 315
            ++     ++ +   A I 
Sbjct: 299 TDQQARAKLEDI--AAQIK 315



 Score = 85.1 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 42/140 (30%), Gaps = 3/140 (2%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLL 238
               +       + +Q    K    A + +          ++ +         G   +  
Sbjct: 286 HARHIMLRTSVVMTDQQARAKLEDIAAQIKSGRISFAAAAKQLSEDPGSANQGGDLGWSS 345

Query: 239 ESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLG-GEIALKAYLSAQNTPTK 296
                P F+N  +   +   + P  +  G   I + D R +   + A K          K
Sbjct: 346 ADAFDPAFRNALMHLKKGEISTPVHSSFGWHLIQLIDTRQVDRTDAAQKDRAYRLLFNRK 405

Query: 297 IEKHEAEYVKKLRSNAIIHY 316
             +    ++++ R++A +  
Sbjct: 406 FAEEAQTWMQEQRASAYVKI 425


>gi|325205366|gb|ADZ00819.1| surA/PPIASE domain protein [Neisseria meningitidis M04-240196]
          Length = 387

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 86/292 (29%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT   +++ +A  K            EL +  + +L+ ++L  Q  ++
Sbjct: 110 SDGIAAVADNEVITRRRLAEAVAEAKANLPKDAQISESELSRQVLMQLVNQSLIVQAGKR 169

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    ++     LS                      A   I   V +   
Sbjct: 170 RNIQASEAEIDAVVAKNPALKNLSPAQRR---------------DFADNIIAEKVRQQAV 214

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 215 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 274

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
                     +   +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 275 GEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 334

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    +  ++  +       K E+     ++ L S A +  
Sbjct: 335 GWHIIKLNEVRDAGTPQERIRNSVRQYIFQQKAEQATVNLLRDLHSGAYVDI 386


>gi|325203397|gb|ADY98850.1| PPIC-type PPIASE domain protein [Neisseria meningitidis M01-240355]
          Length = 366

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 86/292 (29%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT   +++ +A  K            EL +  + +L+ ++L  Q  ++
Sbjct: 89  SDGIAAVADNEVITRRRLAEAVAEAKANLPKDAQISESELSRQVLMQLVNQSLIVQAGKR 148

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    ++     LS                      A   I   V +   
Sbjct: 149 RNIQASEAEIDAVVAKNPALKNLSPAQRR---------------DFADNIIAEKVRQQAV 193

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 194 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 253

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
                     +   +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 254 GEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 313

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    +  ++  +       K E+     ++ L S A +  
Sbjct: 314 GWHIIKLNEVRDAGTPQERIRNSVRQYIFQQKAEQATVNLLRDLHSGAYVDI 365


>gi|325199485|gb|ADY94940.1| PPIC-type PPIASE domain protein [Neisseria meningitidis H44/76]
          Length = 360

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 86/292 (29%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT   +++ +A  K            EL +  + +L+ ++L  Q  ++
Sbjct: 83  SDGIAAVADNEVITRRRLAEAVAEAKANLPKDAQISESELSRQVLMQLVNQSLIVQAGKR 142

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    ++     LS                      A   I   V +   
Sbjct: 143 RNIQASEAEIDAVVAKNPALKNLSPAQRR---------------DFADNIIAEKVRQQAV 187

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 188 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 247

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
                     +   +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 248 GEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 307

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    +  ++  +       K E+     ++ L S A +  
Sbjct: 308 GWHIIKLNEVRDAGTPQERIRNSVRQYIFQQKAEQATVNLLRDLHSGAYVDI 359


>gi|325197566|gb|ADY93022.1| PPIC-type PPIASE domain protein [Neisseria meningitidis G2136]
          Length = 360

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 86/292 (29%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT   +++ +A  K            EL +  + +L+ ++L  Q  ++
Sbjct: 83  SDGIAAVADNEVITRRRLAEAVAEAKANLPKDAQISESELSRQVLMQLVNQSLIVQAGKR 142

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    ++     LS                      A   I   V +   
Sbjct: 143 RNIQASEAEIDAVVAKNPALKNLSPAQRR---------------DFADNIIAEKVRQQAV 187

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 188 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 247

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
                     +   +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 248 GEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 307

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    +  ++  +       K E+     ++ L S A +  
Sbjct: 308 GWHIIKLNEVRDAGTPQERIRNSVRQYIFQQKAEQATVNLLRDLHSGAYVDI 359


>gi|325145275|gb|EGC67554.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis
           M01-240013]
          Length = 369

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 86/292 (29%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT   +++ +A  K            EL +  + +L+ ++L  Q  ++
Sbjct: 92  SDGIAAVADNEVITRRRLAEAVAEAKANLPKDAQISESELSRQVLMQLVNQSLIVQAGKR 151

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    ++     LS                      A   I   V +   
Sbjct: 152 RNIQASEAEIDAVVAKNPALKNLSPAQRR---------------DFADNIIAEKVRQQAV 196

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 197 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 256

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
                     +   +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 257 GEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 316

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    +  ++  +       K E+     ++ L S A +  
Sbjct: 317 GWHIIKLNEVRDAGTPQERIRNSVRQYIFQQKAEQATVNLLRDLHSGAYVDI 368


>gi|325143121|gb|EGC65468.1| PPIC-type PPIASE domain protein [Neisseria meningitidis 961-5945]
          Length = 363

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 86/292 (29%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT   +++ +A  K            EL +  + +L+ ++L  Q  ++
Sbjct: 86  SDGIAAVADNEVITRRRLAEAVAEAKANLPKDAQISESELSRQVLMQLVNQSLIVQAGKR 145

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    ++     LS                      A   I   V +   
Sbjct: 146 RNIQASEAEIDAVVAKNPALKNLSPAQRR---------------DFADNIIAEKVRQQAV 190

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 191 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 250

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
                     +   +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 251 GEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 310

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    +  ++  +       K E+     ++ L S A +  
Sbjct: 311 GWHIIKLNEVRDAGTPQERIRNSVRQYIFQQKAEQATVNLLRDLHSGAYVDI 362


>gi|325141118|gb|EGC63621.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis CU385]
          Length = 357

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 86/292 (29%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT   +++ +A  K            EL +  + +L+ ++L  Q  ++
Sbjct: 80  SDGIAAVADNEVITRRRLAEAVAEAKANLPKDAQISESELSRQVLMQLVNQSLIVQAGKR 139

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    ++     LS                      A   I   V +   
Sbjct: 140 RNIQASEAEIDAVVAKNPALKNLSPAQRR---------------DFADNIIAEKVRQQAV 184

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 185 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 244

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
                     +   +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 245 GEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 304

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    +  ++  +       K E+     ++ L S A +  
Sbjct: 305 GWHIIKLNEVRDAGTPQERIRNSVRQYIFQQKAEQATVNLLRDLHSGAYVDI 356


>gi|325135085|gb|EGC57713.1| PPIC-type PPIASE domain protein [Neisseria meningitidis M13399]
          Length = 363

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 86/292 (29%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT   +++ +A  K            EL +  + +L+ ++L  Q  ++
Sbjct: 86  SDGIAAVADNEVITRRRLAEAVAEAKANLPKDAQISESELSRQVLMQLVNQSLIVQAGKR 145

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    ++     LS                      A   I   V +   
Sbjct: 146 RNIQASEAEIDAVVAKNPALKNLSPAQRR---------------DFADNIIAEKVRQQAV 190

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 191 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 250

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
                     +   +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 251 GEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 310

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    +  ++  +       K E+     ++ L S A +  
Sbjct: 311 GWHIIKLNEVRDAGTPQERIRNSVRQYIFQQKAEQATVNLLRDLHSGAYVDI 362


>gi|325128991|gb|EGC51842.1| surA/PPIASE domain protein [Neisseria meningitidis N1568]
          Length = 390

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 86/292 (29%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT   +++ +A  K            EL +  + +L+ ++L  Q  ++
Sbjct: 113 SDGIAAVADNEVITRRRLAEAVAEAKANLPKDAQISESELSRQVLMQLVNQSLIVQAGKR 172

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    ++     LS                      A   I   V +   
Sbjct: 173 RNIQASEAEIDAVVAKNPALKNLSPAQRR---------------DFADNIIAEKVRQQAV 217

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 218 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 277

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
                     +   +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 278 GEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 337

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    +  ++  +       K E+     ++ L S A +  
Sbjct: 338 GWHIIKLNEVRDAGTPQERIRNSVRQYIFQQKAEQATVNLLRDLHSGAYVDI 389


>gi|261391812|emb|CAX49267.1| putative peptidylprolyl isomerase (peptidyl-prolyl cis-trans
           isomerase; PPIase; rotamase; cyclophilin; FKBP65)
           [Neisseria meningitidis 8013]
          Length = 354

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 86/292 (29%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT   +++ +A  K            EL +  + +L+ ++L  Q  ++
Sbjct: 77  SDGIAAVADNEVITRRRLAEAVAEAKANLPKDAQISESELSRQVLMQLVNQSLIVQAGKR 136

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    ++     LS                      A   I   V +   
Sbjct: 137 RNIQASEAEIDAVVAKNPALKNLSPAQRR---------------DFADNIIAEKVRQQAV 181

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 182 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 241

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
                     +   +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 242 GEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 301

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    +  ++  +       K E+     ++ L S A +  
Sbjct: 302 GWHIIKLNEVRDAGTPQERIRNSVRQYIFQQKAEQATVNLLRDLHSGAYVDI 353


>gi|254674145|emb|CBA09929.1| PPIC-type PPIASE domain protein [Neisseria meningitidis alpha275]
          Length = 378

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 86/292 (29%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT   +++ +A  K            EL +  + +L+ ++L  Q  ++
Sbjct: 101 SDGIAAVADNEVITRRRLAEAVAEAKANLPKDAQISESELSRQVLMQLVNQSLIVQAGKR 160

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    ++     LS                      A   I   V +   
Sbjct: 161 RNIQASEAEIDAVVAKNPALKNLSPAQRR---------------DFADNIIAEKVRQQAV 205

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 206 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 265

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
                     +   +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 266 GEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 325

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    +  ++  +       K E+     ++ L S A +  
Sbjct: 326 GWHIIKLNEVRDAGTPQERIRNSVRQYIFQQKAEQATVNLLRDLHSGAYVDI 377


>gi|15676205|ref|NP_273337.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis MC58]
 gi|7225507|gb|AAF40735.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis MC58]
          Length = 348

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 86/292 (29%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT   +++ +A  K            EL +  + +L+ ++L  Q  ++
Sbjct: 71  SDGIAAVADNEVITRRRLAEAVAEAKANLPKDAQISESELSRQVLMQLVNQSLIVQAGKR 130

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    ++     LS                      A   I   V +   
Sbjct: 131 RNIQASEAEIDAVVAKNPALKNLSPAQRR---------------DFADNIIAEKVRQQAV 175

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 176 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 235

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
                     +   +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 236 GEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 295

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    +  ++  +       K E+     ++ L S A +  
Sbjct: 296 GWHIIKLNEVRDAGTPQERIRNSVRQYIFQQKAEQATVNLLRDLHSGAYVDI 347


>gi|255036261|ref|YP_003086882.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dyadobacter
           fermentans DSM 18053]
 gi|254949017|gb|ACT93717.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dyadobacter
           fermentans DSM 18053]
          Length = 457

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/280 (9%), Positives = 79/280 (28%), Gaps = 8/280 (2%)

Query: 8   SLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK 67
            ++ +I        +++  +V     +      +I   ++   I   ++       K + 
Sbjct: 2   KVNKWIGAHLAAIFMLLCSVVSFGQGQQGVSLDKIIARVDNHYILSSELEDMYNQYKAEG 61

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
                +   ++ LI+  +   + E   +T +   V+                  + ++  
Sbjct: 62  RGAPEKCQLLESLIINKMLLAKAEIDSVTVEDKEVDGELNAKMNYMVQRFGSEKNIVEAY 121

Query: 128 GIGDNHFKQYLAIQSIWPDVVKND---FMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           G    + K  L  Q     +V+               ++      +   ++        +
Sbjct: 122 GKSIENLKGELRQQVKEQKIVEKMQRTISGNVKITPADVRKFFNSIPKDSLPYIPSEVEV 181

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRL---RLPKDCNKLEKFASKI-HDVSIGKAQYLLES 240
             I       +   +K  +  +E +    +        + ++  +      G   +    
Sbjct: 182 GHIVKKGTVTREQKEKLRQQLQELKQRAEKGEDFAMLAQIYSEDLGSAKVGGDLGFAKRG 241

Query: 241 DLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
            + P+F+           +N   +Q G   I + + R   
Sbjct: 242 QMVPEFEGAALGLKPGEMSNVIESQFGFHLIKLIETRGAE 281


>gi|148553334|ref|YP_001260916.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingomonas
           wittichii RW1]
 gi|148498524|gb|ABQ66778.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingomonas
           wittichii RW1]
          Length = 446

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 83/256 (32%), Gaps = 10/256 (3%)

Query: 44  TTINGEVITDGDISKRIALLKLQK-------INGELEKIAVQELIVETLKKQEIEKSGIT 96
             +NG +IT  D+ +R+AL+               L    ++ LI ETL+ QE     + 
Sbjct: 58  AIVNGTIITQTDVEQRLALVIAANGGNIPDEERERLRLQVLRNLIDETLQIQEATAQKVE 117

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
                V   + + A N   S ++F+ FL ++G      K+ +  ++ W  V+        
Sbjct: 118 VSREEVQQTYDRVAANFRKSPKEFAEFLHEKGSSQASIKRQIEGEAAWRRVLSRKVEPFV 177

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
              + E+  N    +    +      V         +         +   +   R     
Sbjct: 178 AVSDEEV--NAIIARLKASKGANEYHVGEIFLSATPETMNEANANAERIIDQVRRGASFA 235

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDK 275
               +F+        G   ++    L  Q    + +      + P     G   + + DK
Sbjct: 236 AYARQFSEASTAAVGGDLGWVRAEQLPDQLSAVVNQLQPGQISQPIAIPGGYSILLLSDK 295

Query: 276 RDLGGEIALKAYLSAQ 291
           R + G     A L  +
Sbjct: 296 RQVLGADPRDAQLLLK 311



 Score = 52.4 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 241 DLHPQFQNLL-KKSQNNTTNPYVT-QKGVEYIAICDKR-DLGGEIALKAYLSAQNTPTKI 297
           DL PQ Q ++       +T P+ + + G+  + +C +             + +Q    ++
Sbjct: 367 DLPPQLQEVMLNLQIGQSTPPFGSMRDGIRALILCGRDDPAPSSGPSFEQIQSQIEQERV 426

Query: 298 EKHEAEYVKKLRSNAIIHY 316
            +    Y++ LR +A+I Y
Sbjct: 427 NRRAQRYLRDLRRDAVIEY 445


>gi|325202891|gb|ADY98345.1| PPIC-type PPIASE domain protein [Neisseria meningitidis M01-240149]
 gi|325207310|gb|ADZ02762.1| surA/PPIASE domain protein [Neisseria meningitidis NZ-05/33]
          Length = 348

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 87/292 (29%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT   +++ +A  K            EL +  + +L+ ++L  Q  ++
Sbjct: 71  SDGIAAVADNEVITRRRLAEAVAEAKANLPKEAQISESELSRQVLMQLVNQSLIVQAGKR 130

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    +++    LS                      A   I   V +   
Sbjct: 131 RNIQASEAEIDAVVAKNSALKNLSPAQRR---------------DFADNIIAEKVRQQAV 175

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 176 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 235

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
                     +   +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 236 GEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 295

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    +  ++  +       K E+     ++ L S A +  
Sbjct: 296 GWHIIKLNEVRDAGTPQERIRNSVRQYIFQQKAEQATVNLLRDLHSGAYVDI 347


>gi|325137107|gb|EGC59703.1| rotamase [Neisseria meningitidis M0579]
          Length = 360

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 87/292 (29%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT   +++ +A  K            EL +  + +L+ ++L  Q  ++
Sbjct: 83  SDGIAAVADNEVITRRRLAEAVAEAKANLPKEAQISESELSRQVLMQLVNQSLIVQAGKR 142

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    +++    LS                      A   I   V +   
Sbjct: 143 RNIQASEAEIDAVVAKNSALKNLSPAQRR---------------DFADNIIAEKVRQQAV 187

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 188 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 247

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
                     +   +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 248 GEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 307

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    +  ++  +       K E+     ++ L S A +  
Sbjct: 308 GWHIIKLNEVRDAGTPQERIRNSVRQYIFQQKAEQATVNLLRDLHSGAYVDI 359


>gi|325131008|gb|EGC53735.1| PPIC-type PPIASE domain protein [Neisseria meningitidis OX99.30304]
          Length = 339

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 87/292 (29%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT   +++ +A  K            EL +  + +L+ ++L  Q  ++
Sbjct: 62  SDGIAAVADNEVITRRRLAEAVAEAKANLPKEAQISESELSRQVLMQLVNQSLIVQAGKR 121

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    +++    LS                      A   I   V +   
Sbjct: 122 RNIQASEAEIDAVVAKNSALKNLSPAQRR---------------DFADNIIAEKVRQQAV 166

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 167 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 226

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
                     +   +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 227 GEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 286

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    +  ++  +       K E+     ++ L S A +  
Sbjct: 287 GWHIIKLNEVRDAGTPQERIRNSVRQYIFQQKAEQATVNLLRDLHSGAYVDI 338


>gi|254805678|ref|YP_003083899.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
           meningitidis alpha14]
 gi|254669220|emb|CBA08040.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
           meningitidis alpha14]
          Length = 351

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 87/292 (29%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT   +++ +A  K            EL +  + +L+ ++L  Q  ++
Sbjct: 74  SDGIAAVADNEVITRRRLAEAVAEAKANLPKEAQISESELSRQVLMQLVNQSLIVQAGKR 133

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    +++    LS                      A   I   V +   
Sbjct: 134 RNIQASEAEIDAVVAKNSALKNLSPAQRR---------------DFADNIIAEKVRQQAV 178

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 179 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 238

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
                     +   +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 239 GEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 298

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    +  ++  +       K E+     ++ L S A +  
Sbjct: 299 GWHIIKLNEVRDAGTPQERIRNSVRQYIFQQKAEQATVNLLRDLHSGAYVDI 350


>gi|260466949|ref|ZP_05813131.1| SurA domain protein [Mesorhizobium opportunistum WSM2075]
 gi|259029246|gb|EEW30540.1| SurA domain protein [Mesorhizobium opportunistum WSM2075]
          Length = 307

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/300 (21%), Positives = 124/300 (41%), Gaps = 9/300 (3%)

Query: 19  YFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQ 78
           + +L+    V +      A +S I+  +N   IT GDI+ R A LKLQ+  G+    A Q
Sbjct: 10  FALLVAATSVSMTVMTPPAFASEIKYVVNNVPITTGDIAHRAAFLKLQRKKGD----AAQ 65

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
           E+I +TL+  E  + GI      V   + + A +  +     +  ++K G+G +HFK+++
Sbjct: 66  EMIDQTLRLAEARRLGIRISDAQVEAAYQRFATSNKMQLSQLNGVMEKSGVGKDHFKEFI 125

Query: 139 AIQSIWPDVVKNDFMLKY--GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
             Q  W   +   +         E +                              +   
Sbjct: 126 RAQMAWNQALGARYRSGEGGSVTEQDAVRRMLDKGGAKPSATEYMLQQVIFVVPASERSA 185

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
            + KR ++A+  R R         +FA  + DV++     +L   L P + + +      
Sbjct: 186 TLAKRKREADAMRARFNGCTTT-REFAKGLIDVTVRDLGRVLAPQLPPDWAEQIKATKVG 244

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK-IEKHEAEYVKKLRSNAII 314
             T    T++GVE+I IC  R++  +   +    ++ +  K  ++   +YV++L++ A I
Sbjct: 245 GATVTRETERGVEFIGICSSREVSDDKTAQMVFQSEGSSDKNADELSKKYVEELKAKAHI 304


>gi|91974780|ref|YP_567439.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB5]
 gi|91681236|gb|ABE37538.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB5]
          Length = 305

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/310 (12%), Positives = 85/310 (27%), Gaps = 50/310 (16%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI---SKRIALLKLQ 66
           S FI    T  +       P+        ++ +   +NG  I   D+    + +     Q
Sbjct: 14  SGFISAAATGCLAFALLASPM---AHAEDANPVLAKVNGAEIRQSDVALAEEELGPSLAQ 70

Query: 67  KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
                 ++  +  LI   +  +  E   I   +                           
Sbjct: 71  MDPATKKENVLAFLIDMKIVAKAAEDKKIADRAEFKKRL--------------------- 109

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
                    ++   + +  D++  +      N  M+        +    +E   R +L  
Sbjct: 110 ---------EFARNRLLMDDLLAVEGKNATTNDAMKKVYEDAAKQISGEQEVHARHILVE 160

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
             D+       ++K                   +K +        G   +  +  + P+F
Sbjct: 161 SEDDAKAVAEELKK-----------GADFAELAKKKSKDPGASDGGDLGFFTKEQMVPEF 209

Query: 247 -QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYV 305
                       ++P  +Q G   I + +KR           +  Q       K +A+YV
Sbjct: 210 SAVAFAMEPGKISDPVKSQFGWHIIKVEEKRSRKP--PTFDQVKPQIEQYVTRKAQADYV 267

Query: 306 KKLRSNAIIH 315
            +LR  A + 
Sbjct: 268 AQLRQAAKVE 277


>gi|297180116|gb|ADI16339.1| parvulin-like peptidyl-prolyl isomerase [uncultured bacterium
           HF130_01F24]
          Length = 436

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/324 (14%), Positives = 110/324 (33%), Gaps = 18/324 (5%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFC-IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL 63
           +        K L     + +F   V + +     +  R+   ++  VI   ++  RI  L
Sbjct: 1   MIDRQKLKPKSLAVSIAITVFATFVGLSASAQRVLLDRVIALVDEGVILQSELDIRINDL 60

Query: 64  KL--------QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
           +              E+    ++ LIVE ++ Q  E+  I +D +T+N      A N+ +
Sbjct: 61  QQAAARDGRPLPPESEIRDDVLEALIVENIQLQMAEQVSIRYDDDTINRVLSNMAENSNM 120

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
           S +++ + L+  G      ++ +  Q +  ++ +     +    E EI           V
Sbjct: 121 SFDEYVTALE-NGGVYLQTREQVRQQMMIQELQRGMVNRRITITEQEIDNFLNSEMGREV 179

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK----LEKFASKIHDVSI 231
                      +  +   +    Q++++ A +   ++ +  N      E   S    +  
Sbjct: 180 MAPDFFIDHMVVVASGTDSDEEKQQKLRFAADLTAQVEEGSNFLQVRAEASESSNFQIQS 239

Query: 232 GKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA 290
               +     L   F +++ +  +     P     G   I +  KR    +I  +  +  
Sbjct: 240 TDFGWRKAEQLPILFSSIVVEMKEGEIAGPIEAGNGYHVIFLAGKRGGTEQIVKQTNIRH 299

Query: 291 QNT---PTKIEKHEAEYVKKLRSN 311
                   + E+     +++LR  
Sbjct: 300 IMLSPNEIRNEEQTITEIQELRQR 323



 Score = 74.7 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/281 (10%), Positives = 89/281 (31%), Gaps = 12/281 (4%)

Query: 46  INGEV-ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           +N  + IT+ +I   +     +++        +  ++V        E+            
Sbjct: 156 VNRRITITEQEIDNFLNSEMGREVMAP--DFFIDHMVVVASGTDSDEEKQQKLRFAADLT 213

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI-----QSIWPDVVKNDFMLKYGNL 159
             V+   N      + S   + Q    +   +          SI  ++ + +        
Sbjct: 214 AQVEEGSNFLQVRAEASESSNFQIQSTDFGWRKAEQLPILFSSIVVEMKEGEIAGPIEAG 273

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSI-PDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
                      +  T +      +   +   N+++N+      I++  +  L        
Sbjct: 274 NGYHVIFLAGKRGGTEQIVKQTNIRHIMLSPNEIRNEEQTITEIQELRQRILSGEDFAVI 333

Query: 219 LEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR 276
             + +      V+ G   ++ E  + P+F+ +++   +N  + P+ +  G     +  +R
Sbjct: 334 ARQHSDDATSVVAGGDLDWVNEGGMPPEFEAVIQVLEENTLSEPFESATGWHIAEVLGRR 393

Query: 277 DLGGEIA-LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +        ++  +      K +     ++ ++R  A + +
Sbjct: 394 ESDLSQQYTRSQAANSLRNRKFDLELQNWMIEIREKAFVEF 434


>gi|319411235|emb|CBY91642.1| peptidyl-prolyl cis-trans isomerase SurA [Neisseria meningitidis
           WUE 2594]
          Length = 360

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 87/292 (29%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT   +++ +A  K            EL +  + +L+ ++L  Q  ++
Sbjct: 83  SDGIAAVADNEVITRRRLAEAVAEAKANLPKDAQISESELSRQVLMQLVNQSLIVQAGKR 142

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    +++    LS                      A   I   V +   
Sbjct: 143 RNIQASEAEIDAVVAKNSALKNLSPAQRR---------------DFADNIIAEKVRQQAV 187

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 188 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 247

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
                     +   +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 248 GEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 307

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    +  ++  +       K E+     ++ L S A +  
Sbjct: 308 GWHIIKLNEVRDAGTPQERIRNSVRQYIFQQKAEQATVNLLRDLHSGAYVDI 359


>gi|239996025|ref|ZP_04716549.1| survival protein surA [Alteromonas macleodii ATCC 27126]
          Length = 427

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/314 (13%), Positives = 98/314 (31%), Gaps = 15/314 (4%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--- 71
           +      L++  ++   S     M  R+   ++  V+ + +I   +  +K          
Sbjct: 1   MKFIIRALMLGALLSFNSVAQEVMLDRVAVIVDQGVVLESEIDALVQDVKRNAEANNQQL 60

Query: 72  -----LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
                L   A++ LI ++L+ Q  E+ GI      +       A N   + E+  + L  
Sbjct: 61  PSDRALRTQAIERLITKSLQLQMAERMGIRISDPQLEQTISNIAANQNATIEELRAQLAA 120

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
           +GI  + +++ +  + I  +V + +   +      EI      M+     +   R     
Sbjct: 121 EGIAYDDYREDIREEVIMGEVRRANVRRRVYITPQEIETLIDLMEQQGATQAEYRLGHIL 180

Query: 187 IPDNKLQNQGFVQ---KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
           I          +Q   +R                     +S    +  G   +L  + + 
Sbjct: 181 IGFPPEPTDEDIQSARERADKVISLLESGSDFAKIAIASSSGNEALEGGDMGWLNINAMP 240

Query: 244 PQFQNLLKKSQNN-TTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEK 299
             F   ++    +    P  +  G   + + D R    +  E     ++  + +    E 
Sbjct: 241 TLFAEAIQNKDKDALVGPIRSGAGFHILKVLDTRGIEKVTVEEVNSRHILVKPSIILSED 300

Query: 300 HEAEYVKKLRSNAI 313
                + + +    
Sbjct: 301 KAKAMLNRFKEEVK 314



 Score = 80.5 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 44/139 (31%), Gaps = 3/139 (2%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLL 238
               +   P   L          +  EE +          ++ +      +  G+  +  
Sbjct: 285 NSRHILVKPSIILSEDKAKAMLNRFKEEVKNGEADFAELAKEHSEDPGSALRGGELGWSD 344

Query: 239 ESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR-DLGGEIALKAYLSAQNTPTK 296
            ++  P+F++   +      + P  T  G   I + ++R D   +   +          K
Sbjct: 345 PNNYVPEFKDALAQLEPGEFSEPVRTVHGWHLIQLIERRIDDATDKRKEDKAYQLIFNRK 404

Query: 297 IEKHEAEYVKKLRSNAIIH 315
             +    +++++R  A + 
Sbjct: 405 FSEETENWLREMRDAAYVE 423


>gi|254671556|emb|CBA09191.1| PPIC-type PPIASE domain protein [Neisseria meningitidis alpha153]
          Length = 366

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 87/292 (29%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT   +++ +A  K            EL +  + +L+ ++L  Q  ++
Sbjct: 89  SDGIAAVADNEVITRRRLAEAVAEAKANLPKEAQISESELSRQVLMQLVNQSLIVQAGKR 148

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    +++    LS                      A   I   V +   
Sbjct: 149 RNIQASEAEIDAVVAKNSALKNLSPAQRR---------------DFADNIIAEKVRQQAV 193

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 194 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 253

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
                     +   +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 254 GEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 313

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    +  ++  +       K E+     ++ L S A +  
Sbjct: 314 GWHIIKLNEVRDAGTPQERIRNSVRQYIFQQKAEQATVNLLRDLHSGAYVDI 365


>gi|121634150|ref|YP_974395.1| putative rotamase [Neisseria meningitidis FAM18]
 gi|120865856|emb|CAM09589.1| putative rotamase [Neisseria meningitidis FAM18]
          Length = 405

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 87/292 (29%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT   +++ +A  K            EL +  + +L+ ++L  Q  ++
Sbjct: 128 SDGIAAVADNEVITRRRLAEAVAEAKANLPKEAQISESELSRQVLMQLVNQSLIVQAGKR 187

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    +++    LS                      A   I   V +   
Sbjct: 188 RNIQASEAEIDAVVAKNSALKNLSPAQRR---------------DFADNIIAEKVRQQAV 232

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 233 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 292

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
                     +   +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 293 GEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 352

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    +  ++  +       K E+     ++ L S A +  
Sbjct: 353 GWHIIKLNEVRDAGTPQERIRNSVRQYIFQQKAEQATVNLLRDLHSGAYVDI 404


>gi|59802035|ref|YP_208747.1| putative cis-trans isomerase [Neisseria gonorrhoeae FA 1090]
 gi|59718930|gb|AAW90335.1| putative cis-trans isomerase [Neisseria gonorrhoeae FA 1090]
          Length = 333

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 88/292 (30%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKL------QKINGELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT+  +++ +A  K       Q    EL +  + +L+ ++L  Q  ++
Sbjct: 56  SDGIAVVADNEVITNRRLAEAVAEAKATLPEDAQISESELSRQVLMQLVNQSLIVQAGKR 115

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    Q+     LS                     LA   I   V +   
Sbjct: 116 RNIQASEAEIDAVVAQNPALKNLSPTQRR---------------ELADNIIAEKVRQQAV 160

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 161 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSKNAAVGAESTIRKIY 220

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
           +             +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 221 DQARNGTDFAGLARRYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 280

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    E  ++  +       K  +     ++ L S A +  
Sbjct: 281 GWHIIKLNEVRDAGTPEERIRNSVRQYIFQQKAGQATVNLLRDLHSGAYVDI 332


>gi|197286178|ref|YP_002152050.1| peptidyl-prolyl cis-trans isomerase SurA [Proteus mirabilis HI4320]
 gi|194683665|emb|CAR44613.1| chaperone SurA protein (peptidyl-prolyl cis-trans isomerase)
           [Proteus mirabilis HI4320]
          Length = 436

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 111/294 (37%), Gaps = 18/294 (6%)

Query: 37  AMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GELEKIAVQELIVETLKKQ 88
              +R+   +N  V+ + D+++ +  +++   N          L +  ++ L+++ +  Q
Sbjct: 27  QELNRVSAIVNNGVVLESDVNRMLQTVQMNAKNAGQEMPDEQVLRQQILERLVMDNIILQ 86

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
             ++  I      V       A    L+ E     L   GI  N ++Q +  + +  +V 
Sbjct: 87  MAQQMQIDIPEAAVESTIQGIAAENNLTLEQLKKRLAADGIAYNDYRQDIRKEMMLAEVR 146

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
            N+   +   L  E+ +  +++++   +   +      IP ++  +   ++K  +     
Sbjct: 147 NNEVRRRITILPQEVDSLAKQIESQASQSIDLNLSHILIPLSENPSPAEIEKAQQVVNRI 206

Query: 209 RLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQ 264
           + +L    +       +++    ++ G   +    +L   F + L    +     P  + 
Sbjct: 207 KNQLKNGADFGKLAATYSADPQALNGGNMGWASIDELPTIFAKQLANAQKGEIVGPLQSG 266

Query: 265 KGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            G+  I + D R     +        ++  +++P   ++     ++K+  +A I
Sbjct: 267 VGLHIIKVNDIRGASKTVSVTEVKARHILLKSSPIMNDEQAYAKLQKI--SADI 318



 Score = 78.2 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 51/138 (36%), Gaps = 3/138 (2%)

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLES 240
             +       + ++    K  K + + R       +  ++++      +  G+  + +  
Sbjct: 292 RHILLKSSPIMNDEQAYAKLQKISADIRSGKISFADAAKEYSEDPGSALRGGELGWSMPD 351

Query: 241 DLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIE 298
              P F++  ++ ++N  + P  +  G   I + D R +   + A K          K  
Sbjct: 352 IYDPAFRDALMRLNKNELSQPVRSNFGWHLIELEDTRSVDKTDAANKEQAYRLLFNRKFN 411

Query: 299 KHEAEYVKKLRSNAIIHY 316
           +    ++++LR+ A +  
Sbjct: 412 EEVQNWMQELRAGAYVKI 429


>gi|94309382|ref|YP_582592.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cupriavidus
           metallidurans CH34]
 gi|121956449|sp|Q1LRA3|SURA_RALME RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|93353234|gb|ABF07323.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Cupriavidus
           metallidurans CH34]
          Length = 493

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/305 (11%), Positives = 87/305 (28%), Gaps = 24/305 (7%)

Query: 31  VSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGELEKIAVQELIV 82
            S     +   +   +N  VIT  ++  R   ++ Q            +L    ++ L++
Sbjct: 73  SSQPRSQLVDEVVAVVNNSVITRRELLDRADEIESQLRAAKREVPPRPDLLGEVLERLVM 132

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           E ++ Q  +++GI      V+      A+   +SA +  S ++  G+    ++  L  Q 
Sbjct: 133 ERVQTQAAQEAGIKVTDQEVDRAIESVAQQNKMSATELRSRVEASGMSWTKYRDELRKQV 192

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQG 196
               + + +   K    + EI                     + + ++    D     + 
Sbjct: 193 QVIRLREREVDSKVQVYDGEIDNYLAARNGGQAAASGPTEFNVAQILVRVPEDASDAQKA 252

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
            ++ + +   +            +  +        G   +     L   F N +   Q  
Sbjct: 253 QLKTKAEGLLKQVQGGADFAELAKANSEAPEASQGGSLGFREIGRLPAVFANAVVDLQPG 312

Query: 257 --TTNPYVTQKGVEYIAICDKR-----DLGGEIALKAYLSAQNTP---TKIEKHEAEYVK 306
                   +  G   + +  KR         +   +  +            E      + 
Sbjct: 313 AVVPEVLESANGFHVVKLVSKRTAAAQPAASDRIAQTQVRHILIRTGPNMPEAEAKRQMA 372

Query: 307 KLRSN 311
            +R  
Sbjct: 373 TIRDR 377



 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 55/140 (39%), Gaps = 2/140 (1%)

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
             +     I       +   ++++    +         +   +++        G+  ++ 
Sbjct: 348 QTQVRHILIRTGPNMPEAEAKRQMATIRDRITHGVDFADAARRYSQDGSASQGGELGWVS 407

Query: 239 ESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAYLSAQNTPTK 296
             +L P+F+  + +      ++P VTQ GV  I + ++R+        + +  A+    K
Sbjct: 408 PGELVPEFEQAMNRLRPGEISDPVVTQFGVHLIQVENRRETEVSPEKQRDFARAEVREQK 467

Query: 297 IEKHEAEYVKKLRSNAIIHY 316
           +     ++V++LRS A + Y
Sbjct: 468 LRAAYDDWVRQLRSAAYVEY 487


>gi|16125933|ref|NP_420497.1| peptidyl-prolyl cis-trans isomerase family protein [Caulobacter
           crescentus CB15]
 gi|13423099|gb|AAK23665.1| peptidyl-prolyl cis-trans isomerase family protein [Caulobacter
           crescentus CB15]
          Length = 501

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 103/285 (36%), Gaps = 16/285 (5%)

Query: 39  SSRIRTTINGEVITDGDISKRIALL-------KLQKINGELEKIAVQELIVETLKKQEIE 91
           S  +   +N ++I+  D+ +R+ LL         Q+   ++E+ A++ LI E L+ QE++
Sbjct: 106 SESVAAVVNDDIISSYDLMQRMRLLMATSGMQPTQENLPQIEQEALRSLIDERLQMQELK 165

Query: 92  KSGITFD------SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
           +               V       A++  L  E     L  QGIG + ++  L  +S W 
Sbjct: 166 RVEKQQKITIISTDKEVEEQIGDIAQSNRLQPEQLKQQLVAQGIGLDTWRAQLRAESSWQ 225

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
             ++  +  +    E +I A ++++ +   +     + +F                    
Sbjct: 226 SWIQGRYGSRLRIGEDQIKAYQRRLADAAAKPQYQISEVFLDAARVGG-MEVAVNGATQL 284

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQ 264
                +         +F+      + G+  ++ + ++  +    L +      + P   +
Sbjct: 285 INQMQQGAPFAAVARQFSGSATAANGGEVGWVSQGEMPTEVDAALEQLRPGQLSRPIQVK 344

Query: 265 KGVEYIAICDKRDLGGEIALK-AYLSAQNTPTKIEKHEAEYVKKL 308
            GV  I + DKR       +    ++A       E   A   K+L
Sbjct: 345 DGVYIIYLRDKRAGSKTAIVDLKQVAAPLAADATEAQIAAATKQL 389



 Score = 82.4 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 2/125 (1%)

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
              +  +    K   + + ++      LE  A+K+  +  G       +DL P FQ    
Sbjct: 376 DATEAQIAAATKQLVDLKPKITSC-QSLEATAAKVDGLVAGDLGEAEITDLAPAFQEAAN 434

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
           K      ++P  T  G+  IA+C KR  G        +  +    ++      Y++ LR+
Sbjct: 435 KLEVGQISDPIRTDAGLHLIAVCGKRQGGANAPTHDQIENRLRGQQLALIAKRYLRDLRN 494

Query: 311 NAIIH 315
            A I 
Sbjct: 495 QATIE 499


>gi|253701712|ref|YP_003022901.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
 gi|251776562|gb|ACT19143.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
          Length = 323

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 94/298 (31%), Gaps = 17/298 (5%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL---------EKIAVQELIVET 84
               +S  +   +NG  IT G++ + +  L  Q    +           + A+ +LI   
Sbjct: 25  PQQKLSQDVPALVNGAPITRGEVDRAVKALLSQNRMAQPIAPEVMKKATEAALDQLISAE 84

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
           +  Q   + G+      V     Q         E +   LD   + +   +  +    + 
Sbjct: 85  VLYQAASEMGVADLDRQVRDRVAQSRSRYRTGDE-YEKALDSVEMSEKEVELAVRKDIVI 143

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNIT----VREYLIRTVLFSIPDNKLQNQGFVQK 200
            ++++  F+ K    E EI    ++ +  +     R  + + ++          +   ++
Sbjct: 144 NNLIRTQFLPKATVSEAEIEEFYRENREKSFRLGERVRVSQILVPVPEQATPAARKQARE 203

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN 259
           +     +   +           ++   + + G    L   +  P F+           + 
Sbjct: 204 KALALLQRVRKGEDFAAVASLESAPPTNKNGGDMGGLNRGEAVPSFEKAAFGLKVGEVSE 263

Query: 260 PYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
              T  G   + +  K           +  +      +K+ K  AEY  +LR++  I 
Sbjct: 264 VVETPVGFHIVKLSQKLPPATATLDEARGQIVRYLQQSKVRKSVAEYAAQLRASGHIE 321


>gi|254494588|ref|ZP_05107759.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 1291]
 gi|268599899|ref|ZP_06134066.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae MS11]
 gi|268604500|ref|ZP_06138667.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID1]
 gi|268685120|ref|ZP_06151982.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268687382|ref|ZP_06154244.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|226513628|gb|EEH62973.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 1291]
 gi|268584030|gb|EEZ48706.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae MS11]
 gi|268588631|gb|EEZ53307.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID1]
 gi|268625404|gb|EEZ57804.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268627666|gb|EEZ60066.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 357

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 88/292 (30%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKL------QKINGELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT+  +++ +A  K       Q    EL +  + +L+ ++L  Q  ++
Sbjct: 80  SDGIAAVADNEVITNRRLAEAVAEAKATLPEDAQISESELSRQVLMQLVNQSLIVQAGKR 139

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    Q+     LS                     LA   I   V +   
Sbjct: 140 RNIQASEAEIDAVVAQNPALKNLSPTQRR---------------ELADNIIAEKVRQQAV 184

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 185 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 244

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
           +             +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 245 DQARNGTDFAGLARRYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 304

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    E  ++  +       K  +     ++ L S A +  
Sbjct: 305 GWHIIKLNEVRDAGTPEERIRNSVRQYIFQQKAGQATVNLLRDLHSGAYVDI 356


>gi|91200802|emb|CAJ73856.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 424

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/282 (12%), Positives = 87/282 (30%), Gaps = 7/282 (2%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGE---LEKIAVQELIVETLKKQEIEKSGIT 96
           ++I  ++N E I   D+ K +   + Q   G    LEK   ++L+ + + +Q + + G+ 
Sbjct: 142 NKIIASVNEEKILRKDLDKILDRFRKQVPPGAIPSLEKQITEQLVTQAILRQFVREKGLD 201

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
              + VN    +   N   +       L++           L+        +        
Sbjct: 202 VADDVVNNEINKMRENIAKNPAAEGKTLEQFLEIQGSNIDELSTAIRMSAALDAYVTNNV 261

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
            +  +E    K   +           ++ +    + ++    + +I+  ++         
Sbjct: 262 DDKTLENYFIKNINEFTGEEVTASHILIGTKGMKEQEDLDKARAKIESIKKELDNGANFA 321

Query: 217 NKLEKFASKIHDVSIGKAQYLLE-SDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICD 274
              +K++      + G+         +   F N          + P  T+ G   I + +
Sbjct: 322 ELAKKYSECPTGKTGGELGSFPRHGVMVETFANAAFSTEVGKVSEPVKTEFGYHLIYVTN 381

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                 +      +        +     + +  LR NA +  
Sbjct: 382 H--APAKDVSFDAVKDTVREKLVAIEMGDLINDLRDNAQVEI 421


>gi|295689679|ref|YP_003593372.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter segnis
           ATCC 21756]
 gi|295431582|gb|ADG10754.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter segnis
           ATCC 21756]
          Length = 452

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 107/293 (36%), Gaps = 19/293 (6%)

Query: 39  SSRIRTTINGEVITDGDISKRIALL-------KLQKINGELEKIAVQELIVETLKKQEIE 91
           S  +   +N ++I+  D+ +R+ LL         Q+   ++++ A++ LI E L+ QE+ 
Sbjct: 57  SESVAAVVNDDIISSYDLMQRMRLLMATSGMQPTQENLPQIQQEALRSLIDERLQMQELR 116

Query: 92  KSGITFD------SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
           +               V+      A++  ++++     L +QGIG + ++  L   S W 
Sbjct: 117 RVEKQQKITIISTDKEVDEQVADIAQSNKMTSDQLKQSLVQQGIGLDTWRAQLRADSSWQ 176

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
             ++  +  +    E +I A ++++     +     + +F    +++             
Sbjct: 177 SWIQGRYGSRLRIGEDQIKAYQRRLAESAAKPQYQISEVFLDA-SRVGGMEVAVNGAAQL 235

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQ 264
                +         +F+      + G   ++ + ++  +  + L +      + P   +
Sbjct: 236 IAQMQQGAPFAAVARQFSGSATAANGGDVGWVNQGEMPTEVDEALEQLRPGQLSRPIQVK 295

Query: 265 KGVEYIAICDKRDLGGEIALK-AYLSAQNTPTKIE---KHEAEYVKKLRSNAI 313
            GV  I + DKR       +    ++A       E       + +  LR    
Sbjct: 296 DGVYIIYLRDKRAGSKTAIVDLKQVAAPLPADATEAQVAAATKLLTDLRPKIN 348



 Score = 79.3 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 45/125 (36%), Gaps = 2/125 (1%)

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
              +  V    K   + R ++       E  A K+  +  G       +DL P FQ    
Sbjct: 327 DATEAQVAAATKLLTDLRPKINSCQTL-ETVAGKVDGLVAGDLGEAEITDLAPAFQEAAS 385

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
           K      ++P  T  G+  IA+C KR  G        +  +    ++      Y++ LR+
Sbjct: 386 KLDIGQISDPIRTDAGLHLIAVCGKRQGGANAPTHDQIENRLRGQQLALISKRYLRDLRN 445

Query: 311 NAIIH 315
            A I 
Sbjct: 446 QATIE 450


>gi|325139171|gb|EGC61717.1| PPIC-type PPIASE domain protein [Neisseria meningitidis ES14902]
          Length = 408

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 86/292 (29%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT   +++ ++  K            EL +  + +L+ ++L  Q  ++
Sbjct: 131 SDGIAAVADNEVITRRRLAEAVSEAKANLPKDAQISESELSRQVLMQLVNQSLIVQAGKR 190

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    ++     LS                      A   I   V +   
Sbjct: 191 RNIQASEAEIDAVVAKNPALKNLSPAQRR---------------DFADNIIAEKVRQQAV 235

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 236 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 295

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
                     +   +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 296 GEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 355

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    +  ++  +       K E+     ++ L S A +  
Sbjct: 356 GWHIIKLNEVRDAGTPQERIRNSVRQYIFQQKAEQATVNLLRDLHSGAYVDI 407


>gi|325131574|gb|EGC54281.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis M6190]
          Length = 405

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 86/292 (29%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT   +++ ++  K            EL +  + +L+ ++L  Q  ++
Sbjct: 128 SDGIAAVADNEVITRRRLAEAVSEAKANLPKDAQISESELSRQVLMQLVNQSLIVQAGKR 187

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    ++     LS                      A   I   V +   
Sbjct: 188 RNIQASEAEIDAVVAKNPALKNLSPAQRR---------------DFADNIIAEKVRQQAV 232

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 233 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 292

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
                     +   +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 293 GEARSGTDFSSLARQYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 352

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    +  ++  +       K E+     ++ L S A +  
Sbjct: 353 GWHIIKLNEVRDAGTPQERIRNSVRQYIFQQKAEQATVNLLRDLHSGAYVDI 404


>gi|268602234|ref|ZP_06136401.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID18]
 gi|268586365|gb|EEZ51041.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID18]
          Length = 357

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 88/292 (30%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKL------QKINGELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT+  +++ +A  K       Q    EL +  + +L+ ++L  Q  ++
Sbjct: 80  SDGIAAVADNEVITNRRLAEAVAEAKATLPEDAQISESELSRQVLMQLVNQSLIVQAGKR 139

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    Q+     LS                     LA   I   V +   
Sbjct: 140 RNIQASEAEIDAVVAQNPALKNLSPTQRR---------------ELADNIIAEKVRQQAV 184

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 185 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSKNAAVGAESTIRKIY 244

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
           +             +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 245 DQARNGTDFAGLARRYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 304

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    E  ++  +       K  +     ++ L S A +  
Sbjct: 305 GWHIIKLNEVRDAGTPEERIRNSVRQYIFQQKAGQATVNLLRDLHSGAYVDI 356


>gi|124516597|gb|EAY58105.1| putative peptidyl-prolyl cis-trans isomerase [Leptospirillum
           rubarum]
          Length = 340

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 111/331 (33%), Gaps = 19/331 (5%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI---- 60
           ++     F  L  +  +L+ F  VP  +     +  ++   +N  +IT  ++ + +    
Sbjct: 1   MYFRYVLFPTLFLSATLLLSFFEVP-PARGERVLVDQVMAVVNHHMITKSELDRSLAPTF 59

Query: 61  ALLKLQKINGELEKIA-------VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
             L  +       ++        + + I E L+ +E E+ G+T   + +++      +  
Sbjct: 60  KKLHKRFRGKAYRELVASLEYKLLMKKINERLELEEAERQGLTVTDDELDHAIESIMQKN 119

Query: 114 GLSAE-DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK--QKM 170
             +++    + L +QG+    +KQ L  Q     +V  +          E+       + 
Sbjct: 120 NFTSKWQLKTALSEQGMSYRRYKQQLRKQMTILKLVNQEVRSTVVISPDEVRQYYLAHRD 179

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE-ESRLRLPKDCNKLEKFASKIHDV 229
           K        +R +   IP+   + Q    ++  +       R           +   +  
Sbjct: 180 KYRLPPHVTLRDIFLRIPEGATEAQIQEIRKHGEHIVRQLKRGDDFVILAGSESEGPNAE 239

Query: 230 SIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKA 286
           + G    L +  L     Q         T+    T  G   I +  + D        LKA
Sbjct: 240 NGGALGDLTKDQLLPELVQPAFTIPPGQTSGLIQTSNGFYIIKVIKREDNSFRSFKELKA 299

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            +    T    +K    +++KLR  + +  Y
Sbjct: 300 QILNDLTKKTTDKRLRIWLEKLREKSYVVIY 330


>gi|326404647|ref|YP_004284729.1| peptidyl-prolyl cis-trans isomerase [Acidiphilium multivorum
           AIU301]
 gi|325051509|dbj|BAJ81847.1| peptidyl-prolyl cis-trans isomerase [Acidiphilium multivorum
           AIU301]
          Length = 311

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 78/285 (27%), Gaps = 48/285 (16%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI---AVQELIVETLKKQEIEKSG 94
               +   ++G  I   D++K    L  Q  N   +++    +  L+ E     +  K+G
Sbjct: 52  QKDTVVAIVDGHDIHLSDVAKAAQDLPPQLQNAPPQELFPVLLNRLVDERALLVKARKAG 111

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
              D                                     +  A Q++    ++     
Sbjct: 112 TAKDPKVAAE------------------------------MKAAADQALERAYLRALVEP 141

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
           K  +  ++   +   +K     E   R +L              Q+  +       +  K
Sbjct: 142 KLTDAAVKAYYDSHYVKAKQPEEVKARQIL-----------VKTQQEAEKIIAQLGKGAK 190

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAI 272
                +K++      + G+  +  + ++   F +          T  P  +Q G   I  
Sbjct: 191 FSALAKKYSIDPGAKNGGELGWFTKDEMVKPFADAAFALKPGTYTKTPVHSQFGWHVIES 250

Query: 273 CDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
             KR+        A +  Q       K     ++  R    I  +
Sbjct: 251 QGKREKPV--PPLADVKDQIRQQITNKAVTAALEDARKGLDIKLF 293


>gi|284035738|ref|YP_003385668.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirosoma linguale
           DSM 74]
 gi|283815031|gb|ADB36869.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirosoma linguale
           DSM 74]
          Length = 458

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/309 (9%), Positives = 87/309 (28%), Gaps = 15/309 (4%)

Query: 13  IKLLTTYFVLII---FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN 69
           +K + +  +L +   F  +P          ++I   ++   +   D+ +       Q   
Sbjct: 1   MKKVISSVLLGLVGWFLTMPAFGQGQGVSLNKIIAKVDNYYVLRSDLEEAYQSYVGQNQT 60

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
              +   ++ L++  +   + E   +  D   V+       +          + ++  G 
Sbjct: 61  PPQKCQLLESLVINKMMLAKAEIDSVVVDDKIVDSELDSRMQYMVQQFGSDKNIVEAYGK 120

Query: 130 GDNHFKQYLAIQSIWPDV---VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
                K  L  Q     V   ++            ++      +   ++        +  
Sbjct: 121 SLEMLKSELRSQVKDQKVVQKMQQKITTDVKVTPRDVRRFYDGIPKDSLPYIPAEVEVGQ 180

Query: 187 IPDNKLQNQGFVQ---KRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL 242
           I       +   +   +R+ D ++            ++ +  +    + G   +     +
Sbjct: 181 IVRFAKPTKEQKEVLRQRLLDMKKRVEAGEDFAKLAKENSEDVGSAQNGGDLGFAKRGMM 240

Query: 243 HPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN-TPTKIEKH 300
              F+    K   N  ++   +  G+  I + + R          ++  +          
Sbjct: 241 VAPFEGAALKLKPNQLSDVVESDFGLHLIQLIETRGA---EYHARHILLRPDYNRLDVSG 297

Query: 301 EAEYVKKLR 309
              Y+  LR
Sbjct: 298 PTHYLDSLR 306


>gi|83312815|ref|YP_423079.1| parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magneticum AMB-1]
 gi|82947656|dbj|BAE52520.1| Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magneticum AMB-1]
          Length = 421

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 95/284 (33%), Gaps = 11/284 (3%)

Query: 15  LLTTYFVLIIFCIVPIVSY--KSWAMSSRIRTTINGEVITDGDISKRIAL-LKLQKINGE 71
           +L    +++   +V  +     +     RI   +N E+I+  D+  R+ L + +  +   
Sbjct: 1   MLARAAIVLSALLVACIPLRPSAAQEVDRIAAVVNDEIISIRDLDARLKLAITVSGLPDN 60

Query: 72  LEK------IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
           +E         +++++ E ++ QE  +  +   ++ V            +        L 
Sbjct: 61  IESRRRAVPQVLRKMVDERVQAQEAARLRVAAGADEVARGVANVENQNRMPPGSLLPSLA 120

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
           K G+  +  K  +    IW  ++           E EI    + ++    +   +   +F
Sbjct: 121 KAGVDPDAVKDQIKADIIWVKLIMRTLQPTIRVGEDEITERIETLRQQFGQPEFMLAEIF 180

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ 245
              D+  Q     ++  +   E             +F+      + G   +L  + L   
Sbjct: 181 LPVDSPRQE-EESKRLGERLIEQLRAGAPFQALARQFSQSGTANNGGVLGWLSAAALEDD 239

Query: 246 FQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
            +  + +  +   +    T  G   +A+ DKR  G        L
Sbjct: 240 IRETVSRLDKGQVSGLVRTGTGYAILALIDKRVAGESNVSDPKL 283



 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 41/104 (39%), Gaps = 3/104 (2%)

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICD 274
           C++++    K++    G+   +  S L    +++      +  + P    K +  + +C 
Sbjct: 316 CDEMDDLGRKLNSEQSGRRDGVTLSVLPQNIRSVASSLPLHKASAPINMGKALLVLMVCS 375

Query: 275 KRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           + +    G +  +  +       ++E     Y++ LR  A I +
Sbjct: 376 RDENVSKGGLPSREAMRRTIEEERLEMLAKRYLRDLRRAAFIDF 419


>gi|218777935|ref|YP_002429253.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759319|gb|ACL01785.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 334

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 102/331 (30%), Gaps = 26/331 (7%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKS---WAMSSRIRTTING-----------EVITDG 54
           +  F K      V + F    + +  +       SR+   +NG           E++T  
Sbjct: 1   MIGFFKGTAILCVSLCFLCASLPAACADDLTEDYSRVVLRVNGMDFHKWEMNLAEILTQD 60

Query: 55  DISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
            + +  A  +  +I     +  ++  I   L  QE   +G   D   V+ F     +   
Sbjct: 61  HMFREGAFFRPSEIPA-FRQAMMESTIWAMLIYQEARAAGEKADPAKVDEFIWSFQKRF- 118

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
            S E +   L+   +    F++      +  D +   F       E E        +   
Sbjct: 119 PSLEAYEKGLEALHVTSEQFRRIAERYVMTQDYLDRKFDPLSKVSEAEAREYYDGHRENF 178

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKR---IKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
            +E ++R     +   +       +K     K       +         +++        
Sbjct: 179 YQEEMVRASHILVEFKEEDGDRADEKALITAKRIVRKLKKGENFAAAAREYSDCESKKRG 238

Query: 232 GKAQYLLESDLH-----PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIAL 284
           G   Y+ + DL      P  + +        + P  +  G   + + DK+     G   +
Sbjct: 239 GDLGYIQKGDLPKAQLKPLEEVVFGMEVGEISEPVESVFGYHILYVEDKKPRTLLGFDEI 298

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           K  L A+ T  +      ++  KL+  A I 
Sbjct: 299 KDKLIAKMTEDRKAAMILDHGTKLKETARIE 329


>gi|171060582|ref|YP_001792931.1| SurA domain-containing protein [Leptothrix cholodnii SP-6]
 gi|170778027|gb|ACB36166.1| SurA domain [Leptothrix cholodnii SP-6]
          Length = 464

 Score =  114 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 99/311 (31%), Gaps = 14/311 (4%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--- 71
           L+ +  +L +          S   +  I   +N E++T+ ++ +R+  L+ +        
Sbjct: 37  LVVSLLMLGLAPASGSAQEGSRQNADYIVAVVNRELVTNSEVQQRVERLEQEAARANAQV 96

Query: 72  -----LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
                L++  + +LI E  +     +SG+  D   ++      A    L+  +    L  
Sbjct: 97  PSRDALQRDVLDQLIDERAQLGVARESGLRIDDAELDRTVASVAAQNQLTVAEMRERLRA 156

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
            G+    F+  L  + +   + + +   +   ++ +I     + +  +            
Sbjct: 157 DGLDYPRFRDNLRDRLLLERLREREVQARLRIVDADIENWLVQQREKSGASNEFNIAQIL 216

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF--ASKIHDVSIGKAQYLLESDLHP 244
           I   +  N      R   A     RL    +  +     S     + G+        L  
Sbjct: 217 IAVPENANVADTAARRAVAVNVLQRLRAGEDFGKLVLELSDASKANGGELGLRRGDALPD 276

Query: 245 QFQNLLKKSQNNTTNP--YVTQKGVEYIAICDKRDLGGEIA--LKAYLSAQNTPTKIEKH 300
            F   ++        P    +  G   + + +++D    I      ++  +  P   ++ 
Sbjct: 277 LFVEAVQPLLAGEVAPQVVRSGAGFHVLKLIERKDATLSIPQTRARHILLRPGPGLSQET 336

Query: 301 EAEYVKKLRSN 311
               + + R  
Sbjct: 337 VIARLAEFRQR 347



 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 48/144 (33%), Gaps = 3/144 (2%)

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGK 233
           ++ +   R +L        Q     +           R         +F+        G 
Sbjct: 315 SIPQTRARHILLRPGPGLSQETVIARLAEFRQRILGGRARF-EELARQFSEDGSAAGGGD 373

Query: 234 AQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL-SAQ 291
             +       P+F+  ++       + P V++ GV  I + ++R +  ++  +  +    
Sbjct: 374 LGWAAPGQFVPEFEQAMQDLQPGGLSAPVVSRFGVHLIQLIERRQVSLDVRQQREVARNA 433

Query: 292 NTPTKIEKHEAEYVKKLRSNAIIH 315
               K E+   E+ + +R+ A + 
Sbjct: 434 LREQKYEETYLEWSRDVRARAYVE 457


>gi|90422049|ref|YP_530419.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB18]
 gi|90104063|gb|ABD86100.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB18]
          Length = 310

 Score =  114 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 76/305 (24%), Gaps = 47/305 (15%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI---SKRIALLKLQKINGE 71
                   +  C++          +  +   +NG+ I   D+    + +     Q     
Sbjct: 13  RFGLACAALTGCLLLAGLPARAQDADPVLAKVNGQEIRQSDVAIAEEELGPSLAQMDPAT 72

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
                +  LI   +  +  E   I    +          R    +               
Sbjct: 73  KTDNVLSFLIDLKIVAKAAEDKKIADREDFKAKLAFARNRLLMDNLLAVEGKAATTDAAM 132

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                  A Q      V+   +L     E +                             
Sbjct: 133 KKVYDDAAKQITGETEVRARHILVETEDEAKA---------------------------- 164

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
                         E+   +        +K +        G   +  +  + P+F ++  
Sbjct: 165 -------------IEDELKKGADFAELAKKKSKDPGASDGGDLGFFTKDQMVPEFSSVAF 211

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
                  ++P  +Q G   I + +KR+        A + AQ       K +A+YV KLR 
Sbjct: 212 ALEPGKISDPVKSQFGWHIIKVEEKRNRKA--PDFAQVKAQIETYVTRKAQADYVTKLRE 269

Query: 311 NAIIH 315
            A I 
Sbjct: 270 TAKIE 274


>gi|212702600|ref|ZP_03310728.1| hypothetical protein DESPIG_00626 [Desulfovibrio piger ATCC 29098]
 gi|212674041|gb|EEB34524.1| hypothetical protein DESPIG_00626 [Desulfovibrio piger ATCC 29098]
          Length = 320

 Score =  114 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/318 (14%), Positives = 111/318 (34%), Gaps = 25/318 (7%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI--ALLKLQKINGELE 73
           L    +LI+   + +      A  ++I   +NG+VIT  D+ K     L + +    + +
Sbjct: 9   LKKSALLILMAWLCLACTAQAAQLNKIAAVVNGQVITMFDLQKAALPELGRARLNPNDPK 68

Query: 74  KI---------AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
           +           +  +I++ L +QE ++  IT   + ++    +  +   ++   F + L
Sbjct: 69  QADKVNVVFRKVLDSMIMDILLEQEAKRLSITASDSEIDQELTKMMKMRRMNRAQFEAEL 128

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            KQG+  +  ++ +    +   V+  +   +    + EI A  +K K+       +   L
Sbjct: 129 KKQGMSVDELRKTMKTNMLRQRVMGAEVGRRVVVTDDEIRAYYEKHKDTMYDRNGLHMGL 188

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
                N                +             K++   +    G    +    L+P
Sbjct: 189 IVYNPNVNARSIAA--------QIASGSLSFEEAARKYSIAPNREKGGDMGPVEWGRLNP 240

Query: 245 QFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-----EIALKAYLSAQNTPTKIE 298
           ++++   K    + T+ +  Q     + +      G          +  +       K  
Sbjct: 241 EWESRLEKMKPGDVTDIFTVQGHKAQVHLFRPGQSGPGRPMTFEEARPVIDNILRQPKAM 300

Query: 299 KHEAEYVKKLRSNAIIHY 316
           +   EY ++LR+ A+I  
Sbjct: 301 ERFDEYSQQLRNKAVIDI 318


>gi|89067389|ref|ZP_01154902.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oceanicola
           granulosus HTCC2516]
 gi|89046958|gb|EAR53012.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oceanicola
           granulosus HTCC2516]
          Length = 280

 Score =  114 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 85/302 (28%), Gaps = 50/302 (16%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI---SKRIALLKLQKINGELE 73
           T   +        + +      +S +  T+NG  IT G++     ++     Q  +  L 
Sbjct: 4   TLRLLASATLAAGLSTAAVAQEASDVVATVNGTDITLGELIIAKAQLPQQYQQLPDDVLF 63

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
              V +LI + L   +++ S         N                              
Sbjct: 64  DGLVDQLIQQQLLSDQLDASPERVQLALKNEE---------------------------- 95

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                       + +            ++     +        EY    +L         
Sbjct: 96  ------RSLRAGEAITRITEEAVSEEALQAAYEARFADAEPQTEYNASHILV-------- 141

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK- 252
                ++ +   E++R           + ++     + G+  +  E  +  +F + +   
Sbjct: 142 --ETEEEAVALTEQARAEGADFAELARENSTGPSGPAGGELGWFGEGMMVQEFYDAVVAL 199

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
              + + P  TQ G   I + + R    E+     L  + T    ++   + + +L + A
Sbjct: 200 EPGDVSEPVQTQFGWHVIKLNETR--LSEVPPLESLRGELTSELQQQAVEDALAELEAGA 257

Query: 313 II 314
            +
Sbjct: 258 DV 259


>gi|323143364|ref|ZP_08078052.1| PPIC-type PPIASE domain protein [Succinatimonas hippei YIT 12066]
 gi|322416882|gb|EFY07528.1| PPIC-type PPIASE domain protein [Succinatimonas hippei YIT 12066]
          Length = 457

 Score =  114 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/324 (12%), Positives = 100/324 (30%), Gaps = 16/324 (4%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
              +  S   F  +      L +   + I    +          +N ++I   ++     
Sbjct: 1   MVYLVKSKKGF-NMFGKRIALALTAALGIAFNANAQTLDTTAAVVNNDIILTSELDAMQK 59

Query: 62  LLKL-------QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
            +         Q       K A+++LI ++L  Q+    G+  +   ++    Q A   G
Sbjct: 60  EMAANFASRGQQVSPVNARKAALEQLITKSLILQQARTHGLNLNDMQLDQALEQFAARNG 119

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
           +S +     +   G+ +   ++      I  +V +N    +    + E+    + +K + 
Sbjct: 120 VSVKTLLDQMGP-GLSEAAQRERFREDLIIGEVRRNQVRNRIKISDSEVKLLAKNLKQLG 178

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIK---DAEESRLRLPKDCNKLEKFASKIHDVSI 231
             E         +P         VQ+ +      +    +     +    +         
Sbjct: 179 SVEPSYHLSQLIVPLAANATSAQVQRAVNTVDKIKADLRKGADFNDLAALYTQGSLAAQG 238

Query: 232 GKAQYLLESDLH-PQFQNLLKKSQNNTTNPYVTQKGVEYIA---ICDKRDLGGEIALKAY 287
           G   Y+ ES +  P   +LLK        P  +  G+  I    + D       +   ++
Sbjct: 239 GDLGYIPESRVPVPFLPSLLKSKPGAVIGPIRSPYGLHLIKYVGVTDGAVKTITMYDASH 298

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSN 311
           +    +    ++   + +  LR  
Sbjct: 299 ILLTTSIVYPDETAVKELNLLRDE 322



 Score = 87.0 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 40/125 (32%), Gaps = 3/125 (2%)

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK 251
            ++  V++     +E         +  + F+      ++ G   Y       P F   + 
Sbjct: 308 PDETAVKELNLLRDEILKGAISFSDAAKNFSEDPGSAINGGDLGYATPDRYDPAFAAAMV 367

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKR-DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
           +      + P  +  G   I + D + DL  + + +             +    + ++LR
Sbjct: 368 RLKPGEISEPVRSSFGYHLIKLNDIKTDLDSDASYEDQARNLIFERLFREESIAWERELR 427

Query: 310 SNAII 314
             A I
Sbjct: 428 DTAYI 432


>gi|268682955|ref|ZP_06149817.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID332]
 gi|268623239|gb|EEZ55639.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID332]
          Length = 357

 Score =  114 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 88/292 (30%), Gaps = 29/292 (9%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKL------QKINGELEKIAVQELIVETLKKQEIEK 92
           S  I    + EVIT+  +++ +A  K       Q    EL +  + +L+ ++L  Q  ++
Sbjct: 80  SDGIAAVADNEVITNRRLAEAVAEAKATLPEDAQISESELSRQVLMQLVNQSLIVQAGKR 139

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I      ++    Q+     LS                     LA   I   V +   
Sbjct: 140 RNIQASEAEIDAVVAQNPALKNLSPTQRR---------------ELADNIIAEKVRQQAV 184

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M      E EI A  ++ +               R     I  +        +  I+   
Sbjct: 185 MQNSRVSEAEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIY 244

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
           +             +++      + G   +  +  + P F+  +          P  TQ 
Sbjct: 245 DQARNGTDFTGLARRYSQDASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQF 304

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + + RD    E  ++  +       K  +     ++ L S A +  
Sbjct: 305 GWHIIKLNEVRDAGTPEERIRNSVRQYIFQQKAGQATVNLLRDLHSGAYVDI 356


>gi|281356754|ref|ZP_06243245.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Victivallis vadensis
           ATCC BAA-548]
 gi|281316881|gb|EFB00904.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Victivallis vadensis
           ATCC BAA-548]
          Length = 314

 Score =  114 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 91/293 (31%), Gaps = 18/293 (6%)

Query: 40  SRIRTTINGEVITDGDI-----SKRIALL------KLQKINGELEKIAVQELIVETLKKQ 88
           + +  ++NGE I+  D+      +           +L +   ++ +  V +LI   L   
Sbjct: 24  NSVLASVNGEPISLWDVLPATRQQEYQAYAAYSGDRLYEAIRQIRRKTVDDLIDRKLLIA 83

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ-SIWPDV 147
           +         +  +       A   G  A        ++        +    +  I   +
Sbjct: 84  DYRDKPFEISNQEIEAELDNIAERMGYRARSEFIREAREAGSSLEKIRKNVEESLIVQLM 143

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           +     +       EI    +      V+   I   L  +  ++   +    +     ++
Sbjct: 144 IFRRIHVAENVTPKEIYEYYKAHSEEFVKPETIELGLLLLSPDRKDLEAVTAEIS---KK 200

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKG 266
                        +++S     + G    +    L P+F   +    +     P  T  G
Sbjct: 201 LAADPENFAALARQYSSGPDAENGGNLGLIERRRLRPEFAAAIPSPEKGKVCGPIRTGDG 260

Query: 267 VEYIAICDKRDLGGEIALK--AYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           V ++ + +          K    +  +    K EK   EYVK+LR NAII Y+
Sbjct: 261 VSFLKVLNHNPAERREFRKLTPEIRRRIEQDKREKIRDEYVKQLRQNAIIRYF 313


>gi|83945293|ref|ZP_00957642.1| peptidyl-prolyl cis-trans isomerase family protein [Oceanicaulis
           alexandrii HTCC2633]
 gi|83851463|gb|EAP89319.1| peptidyl-prolyl cis-trans isomerase family protein [Oceanicaulis
           alexandrii HTCC2633]
          Length = 411

 Score =  114 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 97/280 (34%), Gaps = 9/280 (3%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +       +L    ++      S      I   +N + IT  D+  R+ L+         
Sbjct: 1   MAFRLALTILAGIALMSAAPTASAQQVEGIAAVVNDQPITTLDVRDRMRLIISSAGVQPT 60

Query: 72  ------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
                 ++  +++ L+ ETL+ Q+  +  +  +   V+      A  +G + ++    L 
Sbjct: 61  EEMLARIQDQSIRGLVDETLQLQQAAEFDLEVEEAEVDDAIADIATRSGATVQEVEDDLA 120

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
             GI  N  +Q +  +  W  +V   +  +    + +I     +      +       +F
Sbjct: 121 ASGIDINTLRQQVKAEIAWQILVSGRYRSRIRISDQQIETALDRYIQSASQPQYRLGEIF 180

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ 245
                +   +  V       ++ R +        ++F+      + G   YL  S ++ Q
Sbjct: 181 VEITPQGGEERAVGIIQTIYDQLR-QGAPFQAVAQQFSDAASASAGGDTGYLPLSGINAQ 239

Query: 246 F-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL 284
             + + +      +NP     G + +A+ D+RD      L
Sbjct: 240 VAEAVTQMEPGQISNPIRVPGGFQIVALIDRRDGQVIEQL 279



 Score = 37.0 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 4/101 (3%)

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPY-VTQKGVEYIAICDK 275
           ++           ++G       + L P  ++ L   +     P   T  G +   +CDK
Sbjct: 313 DEAMSDVEGAFVTNLGDVG---ANALVPTIRDALGGLEPVAATPVLDTAAGAQVFVLCDK 369

Query: 276 RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
              G  +     +  Q    ++      +++ LR +A I  
Sbjct: 370 ALTGPGVPSADQIENQLINQQLSLLSRRWLRDLRRDATIEI 410


>gi|114778682|ref|ZP_01453494.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mariprofundus
           ferrooxydans PV-1]
 gi|114551044|gb|EAU53606.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mariprofundus
           ferrooxydans PV-1]
          Length = 570

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 101/294 (34%), Gaps = 15/294 (5%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING---------ELEKIAVQELIVET 84
                   I   +N E IT   + +   ++  Q             EL + ++  LIV+T
Sbjct: 17  AQAEEFDSIAAVVNNEAITCSQVDQDAQIMLTQLHQSGSTFIPAASELNQRSLDGLIVKT 76

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
           L+KQE  K  +      ++      A +  L+ +   + +++QG+  + ++  L  Q + 
Sbjct: 77  LQKQEARKLELKVSDEELDDAIKNVAASNNLTPDQLKAAVEQQGMHYDEYRSNLREQILK 136

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ---KR 201
             +V      K    E  +    +K          ++     +          +    ++
Sbjct: 137 NKLVNVAVRSKIQVSEEAVQEYYRKYLEHPKPRREVKLAQLFLSLPSEPTPEQLAVTRQK 196

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPY 261
           I++  +  L        +  ++        G   + ++  +  +F + L+      ++P 
Sbjct: 197 IRNIHQQLLAGKDFAQMVAIYSESPDRQQQGVMGWFMQGGVAQRFASALEMPVGQISDPI 256

Query: 262 VTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVK-KLRSNA 312
            +  G   + +  +R  D          + A++   K+  +     K K+R  A
Sbjct: 257 RSPSGFHILKVLAERWKDPQNTGVSYDEVHARHILLKVPSYADAATKAKIRQRA 310



 Score = 93.2 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 50/160 (31%), Gaps = 6/160 (3%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL--- 219
                 +   ++  E   R +L  +P           ++  +A    L+   D       
Sbjct: 270 ERWKDPQNTGVSYDEVHARHILLKVPSYADAATKAKIRQRAEAISHDLQGASDAQFAVRA 329

Query: 220 EKFASKIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKR-- 276
           ++ +        G   +  +  + P F+          T+ P  +  G   I I  +R  
Sbjct: 330 KEDSQGPSAERGGDLGWFKKGAMVPAFEKAAFAMKPGETSGPVESPFGFHIIRIVARRHI 389

Query: 277 DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           D     A +  +    T  + ++    ++  LR+ A I  
Sbjct: 390 DPNSLQAHRDQIQQILTNVETQEQLPRWIASLRAEANIDI 429


>gi|315127730|ref|YP_004069733.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Pseudoalteromonas sp.
           SM9913]
 gi|315016244|gb|ADT69582.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Pseudoalteromonas sp.
           SM9913]
          Length = 431

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 105/317 (33%), Gaps = 19/317 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           + L       ++   +   ++ +     ++   +N  VI   ++   +  +K Q      
Sbjct: 1   MNLKKLLTSAVLTFSLCQSAFAAPVEIDKVIGIVNQGVILKSEVDTIVDRVKKQAEKQNQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L   A++ L+ +TL  Q  E+ G+    + ++      A+  G +  D    +
Sbjct: 61  QLPKDETLRVQAIERLVNQTLMMQMAERMGLEISDSQLDQTLANMAKEQGGTIADLRRTI 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA--NKQKMKNITVREYLIRT 182
           +  G     +++ +  +     V + +   +    + EI         +     EY I  
Sbjct: 121 EASGESFQAYREEIRKEITTQQVTRANVDRRIYVSDQEIDNLLKIMDSQGQNAEEYDIGH 180

Query: 183 VLFSIPDNKLQNQGFVQK-RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
           +L  IP     +     K R     E      +        +S    +  G+  ++  ++
Sbjct: 181 ILIDIPSGAAADDVSSAKTRADKVIELLEDGQEFKRIAISSSSGSKALEGGQLGWMGINE 240

Query: 242 LHPQFQNLLKKSQNN-TTNPYVTQKGVEYIAICDKRD---LGGEIALKAYLSAQ----NT 293
           +   F   +K  + +    P  +  G   I + D R    +        ++  +     +
Sbjct: 241 MPSLFAEAVKGKKKDAIIGPLRSGAGFHIIKVQDVRGRQVVETTEVKSRHILIKPSIILS 300

Query: 294 PTKIEKHEAEYVKKLRS 310
             K     A +VK LR+
Sbjct: 301 EEKARTMLAGFVKDLRA 317



 Score = 73.6 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 52/158 (32%), Gaps = 3/158 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           I     + + +     +    +   P   L  +          ++ R          ++ 
Sbjct: 270 IKVQDVRGRQVVETTEVKSRHILIKPSIILSEEKARTMLAGFVKDLRAGDVDFAELAKEH 329

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL-G 279
           +      +  G+  +   +   P F++ L    +N  + P+ +Q G   + + DKR    
Sbjct: 330 SQDPGSALKGGQYDWTDPTTYVPAFRDTLLSLDKNEISEPFRSQFGWHIVQLLDKRVADK 389

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            E A +          K ++    + +++R  A +  +
Sbjct: 390 TEQAKRNRAHGMLFNRKFKEESFNWQQEMREQAHVEIF 427


>gi|251772781|gb|EES53343.1| putative peptidyl-prolyl cis-trans isomerase [Leptospirillum
           ferrodiazotrophum]
          Length = 382

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 92/296 (31%), Gaps = 18/296 (6%)

Query: 40  SRIRTTINGEVITDGDISKRIALL-----------KLQKINGELEKIAVQELIVETLKKQ 88
             I   +N   IT  ++ + +                 ++   LE   + + I E L+ +
Sbjct: 70  DSIMAVVNHHSITKSEVDRELKPTFEKIHATYQGPAYMQLVASLEYNVMMKKINERLELE 129

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAE-DFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           E ++ G++   + V++      +   +       + L  QG+    +++ L  Q     +
Sbjct: 130 EADRLGLSVTDDEVDHAIDDIMQKNNIQERWQLKNALASQGLTFRQYRKKLKKQLTVMKL 189

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR---TVLFSIPDNKLQNQGFVQKRIKD 204
           V  +          E+     K ++       +      L    +        V+K+ + 
Sbjct: 190 VNQEVRSTVVISPEEVRDYFLKHRDEYRLPAHVSLADIFLALPENPTPAQIAEVRKKGEH 249

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVT 263
                 R           +   +  S G    L +  L               T+    T
Sbjct: 250 VLRQIGRGDDFEMLAGSESQGPNAESGGALGNLTKDQLLPELIGPAFSVPVGKTSGLIQT 309

Query: 264 QKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            +G   I +  +  +       +K  +    T    EK    +++KLR+++ +  Y
Sbjct: 310 DRGFYIIKVLAREAQPYQKFDDIKQTILNTLTKKTTEKRLRLWLEKLRAHSYVAIY 365


>gi|319898728|ref|YP_004158821.1| Peptidyl-prolyl cis-trans isomerase [Bartonella clarridgeiae 73]
 gi|319402692|emb|CBI76238.1| Peptidyl-prolyl cis-trans isomerase [Bartonella clarridgeiae 73]
          Length = 319

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 115/292 (39%), Gaps = 6/292 (2%)

Query: 31  VSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEI 90
                    + +  T+NG  IT  DI +RIA LKLQ+  G L   A  ELI E LK  EI
Sbjct: 27  FFTSQVFAQTSVVVTVNGNPITSYDIQRRIAFLKLQQKQGNLAAQAKNELIDEALKNNEI 86

Query: 91  EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
           ++  I    + V   F   A    ++ +  +  L +  +   HFK Y+  Q  W  +V  
Sbjct: 87  KRRNIEVSKDEVESAFKNFALQNNMTVDQLNQMLAQTDVTVEHFKTYILGQMGWGRLVNA 146

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
            +  + G L  +  A++              T+   I       +  + ++ K       
Sbjct: 147 RYQAEGGVLTEQETAHRILKNGGVKPSTNEYTLQRIIFVIPEHRRSAILEKRKKEANKFR 206

Query: 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEY 269
                C+  +  A  I DV+I      LE  L   ++  +  +     TN   TQ G+E 
Sbjct: 207 ANFHGCHNAQNQAKSILDVTIRHLGKFLEPQLPQNWEKAILATPAGKMTNFQETQYGIEA 266

Query: 270 IAICDKRDLGGEIALKAYLSAQNTPTK-----IEKHEAEYVKKLRSNAIIHY 316
           +AIC  + +  +   +   S Q+   K     +E    +Y+K+LR  A I  
Sbjct: 267 LAICQIKRVSDDRVARLIFSIQDHQKKDIPQLLEALSEKYLKELRQTAHIQN 318


>gi|254504552|ref|ZP_05116703.1| PPIC-type PPIASE domain protein [Labrenzia alexandrii DFL-11]
 gi|222440623|gb|EEE47302.1| PPIC-type PPIASE domain protein [Labrenzia alexandrii DFL-11]
          Length = 282

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 34/309 (11%), Positives = 85/309 (27%), Gaps = 48/309 (15%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--- 69
           ++       + I  +    +  S A    +   +   VIT+ DI+     L  +      
Sbjct: 1   MRRPIKALAVSIMALTLGSASLSAAEPDDVVAKVGDAVITEADIAFAAQDLGQELQRFPA 60

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
            +  ++ +  +I   L     +  G+  D +                             
Sbjct: 61  AQWRQLLLDVMIDMELLALAAKNDGLDQDPDFKKQL------------------------ 96

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                 ++L ++++    +         + +++   +K+  +     E   R +L     
Sbjct: 97  ------EFLELRALRNAYLGQKINASITDADVKTAYDKEFAEFEGPEEINARHIL----- 145

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                    +   +                ++ ++     + G   Y  +  + P F+  
Sbjct: 146 ------VEDKAAAEALIAELDGGADFAELAKEKSTGPSGPNGGDLGYFAKGQMVPPFEEA 199

Query: 250 LKK-SQNNTT-NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
                  + T  P  TQ G   I + DKR    E      + A        +     + +
Sbjct: 200 AFALEPGSFTKEPVETQFGWHIIKVEDKRRQ--EKPALDTVEANLRQQLARERYEARMVE 257

Query: 308 LRSNAIIHY 316
           L+    +  
Sbjct: 258 LKDEYAVEI 266


>gi|319404053|emb|CBI77641.1| Peptidyl-prolyl cis-trans isomerase [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 319

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 117/292 (40%), Gaps = 6/292 (2%)

Query: 31  VSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEI 90
                    + +  T+NG  IT+ DI +RIA LKLQ+  G L   A  +LI E LK  EI
Sbjct: 27  FFTSQAFAQTSVVVTVNGSAITNYDIQRRIAFLKLQQKQGNLATQAKNDLIDEVLKNNEI 86

Query: 91  EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
           ++  I   ++ V   F   A    ++ +  +  L +  +   HFK Y+  Q  W  +V  
Sbjct: 87  KRRNIEVSTDEVENAFENFAAQNNMTVDQLNQMLTQTDVTVEHFKAYILGQMGWARLVNA 146

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
            +  + G +  +  + +              T+   I       +  + ++ K       
Sbjct: 147 RYQAEGGVITEQEASQRILKNGGVKPSTNEYTLQQIIFVIPEHRRSAILEKRKKEANKFR 206

Query: 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEY 269
              + CN  +  A  I D++I      LE  L   ++  +  +     TN   TQ G+E 
Sbjct: 207 ANFQGCNSAKNQAKGILDITIRHLGKFLEPQLPQNWEKAILATPAGKMTNFQETQNGIEA 266

Query: 270 IAICDKRDLGGEIALKAYLSAQNTPTK-----IEKHEAEYVKKLRSNAIIHY 316
           +A+C  + +  +   +   S Q+   K     +E    +Y+K+LR  A I  
Sbjct: 267 VAVCQIKRVSDDRVARLIFSIQDHQKKNIPQLLEALSEKYLKELRQTARIQN 318


>gi|254485739|ref|ZP_05098944.1| ppic-type ppiase domain protein [Roseobacter sp. GAI101]
 gi|214042608|gb|EEB83246.1| ppic-type ppiase domain protein [Roseobacter sp. GAI101]
          Length = 282

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 43/308 (13%), Positives = 88/308 (28%), Gaps = 58/308 (18%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMS----SRIRTTINGEVITDGDISKRIALLKLQKI---N 69
            +   L  F +   +S  + A        +  T+NG  IT G +    A L  Q      
Sbjct: 3   KSLTFLAPFVVAASLSLPAMAQEEVKADTVVATVNGTEITVGHMIIARATLPEQYQQLPP 62

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
             L K  + +L+ +T  +                                  SF      
Sbjct: 63  EVLFKGILDQLVQQTALE---------------------------------QSFEGDVPA 89

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                 +    Q I  +V++          ++     ++        E+    +L    +
Sbjct: 90  RVALSLENERRQLIAGEVIEKAMAADISAEDLAAAYEEEYGSAEPTEEFNASHILVETEE 149

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
           + L  +  +                     ++ ++     S G   +     + P F+  
Sbjct: 150 DALAVKAEID-----------GGADFAETAKEKSTGPSGPSGGSLGWFGPGMMVPAFETA 198

Query: 250 LKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
           ++       + P  TQ G   I + DKR  D     ++K  L  Q    K ++     + 
Sbjct: 199 VQDLEVGAVSMPVETQFGWHIIKLEDKRLKDAPALESVKEELELQLRQVKAQEK----IT 254

Query: 307 KLRSNAII 314
           ++   A +
Sbjct: 255 EMTDAADV 262


>gi|194332867|ref|YP_002014727.1| SurA domain [Prosthecochloris aestuarii DSM 271]
 gi|194310685|gb|ACF45080.1| SurA domain [Prosthecochloris aestuarii DSM 271]
          Length = 439

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/308 (9%), Positives = 96/308 (31%), Gaps = 16/308 (5%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN----GE 71
                 L + C   +   ++ A   RI   +  E++   +I ++  + +LQ        +
Sbjct: 6   FRILVALALLCFAGVPVLRA-ATVDRIVAIVGNEIVLQSEIEQQAVMTELQYPEMAKAKD 64

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           L    +  L+++ +   +     +  + + ++    +                       
Sbjct: 65  LRGRILDNLVMQKIVLTKARLDSVNVNESDIDKQTDERLMFLRSRFPSIEEMEKTFSKSY 124

Query: 132 NHFKQYLAIQSIWPDVV-----KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
              ++ +        ++     +    +     E+E    + + +  ++ E +  + +  
Sbjct: 125 AMIEKEIKDDIRNQQLIDNLRRQKMSGVTVSYDEVEDFYRQHRDELPSIPESVQISQIIM 184

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQ 245
            P    +N+   +  I+D ++  L          +++         G   Y    +    
Sbjct: 185 YPQVTPENKAKARSLIEDVQQRLLEGADFDEMARRYSQDPGSAEVGGDLGYSKRGEFVKP 244

Query: 246 FQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN-TPTKIEKHEAE 303
           ++           +    ++ G   I + +K    G+     ++ A     T       E
Sbjct: 245 YEEAAFSLKDGEISAIVESRFGYHIIQLLEK---EGDRVHTRHILAVFDRTTLDRDAAKE 301

Query: 304 YVKKLRSN 311
            ++++RS+
Sbjct: 302 KLEEIRSD 309


>gi|251794480|ref|YP_003009211.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           JDR-2]
 gi|247542106|gb|ACS99124.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           JDR-2]
          Length = 392

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/305 (12%), Positives = 86/305 (28%), Gaps = 26/305 (8%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K       ++   ++ ++    +    +   T+NG  IT     K    L  Q     L+
Sbjct: 74  KAWIAVSAILAIVLIIVLIKPPFGAGDKAVATVNGAKITK---DKLYDSLVEQGGKSTLD 130

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
            +   ELI +         + +T     V+       ++ G   E   +           
Sbjct: 131 NMITTELIDQ-----AAADAKVTVTEADVDKEIENLKKSFGSEDEFNQTLAQ-----YGM 180

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
               L   +     ++     +    + +I A     K        IR     +   +  
Sbjct: 181 TVDSLREDAEVQVKIRKILEPQVKVTDDDIKAYYDANKASMSTPEQIRASHILVATKEEA 240

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK 252
                     D  +            ++ ++      + G   +  +  + P F++    
Sbjct: 241 E---------DILKQLKAGADFATLAKEKSTDTGTKDNGGDLNFFGKGSMEPAFEDAAFA 291

Query: 253 -SQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
             +   +    T  G   I   D++          K  +  Q    K+ +  + ++  L+
Sbjct: 292 LKKGELSGVVQTSYGYHIIKKTDEKAAVTPTLEEKKEDIKYQLVTQKVSELSSTWMADLK 351

Query: 310 SNAII 314
           + A I
Sbjct: 352 AKAKI 356


>gi|24375136|ref|NP_719179.1| survival protein surA [Shewanella oneidensis MR-1]
 gi|81744686|sp|Q8EB95|SURA_SHEON RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|24349906|gb|AAN56623.1|AE015799_10 survival protein surA [Shewanella oneidensis MR-1]
          Length = 434

 Score =  113 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/317 (12%), Positives = 103/317 (32%), Gaps = 19/317 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +K        +    +   +  +     R+   IN  ++ + +I+  I  +K        
Sbjct: 1   MKPSKHLIFALFALAISQPTMAAPQPLDRVAVQINDGIVLESEITNMIDTVKANAKAANQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L    ++ LI+  L+ Q  ++ G+      ++      AR   ++       +
Sbjct: 61  SLPSDSALRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQKMTVAQMQQKI 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
             +GI  + +++ L  +    ++ +     +      EI    + ++   +++   +   
Sbjct: 121 ASEGISFSQYREQLREEITLGEIQRIQVQRRIQVSPQEITGLVKLIQEQGMKDVEYQIGH 180

Query: 185 FSIPDNKLQNQGFVQ---KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             I          ++   KR     E               +S    +  G   Y+  ++
Sbjct: 181 ILIDVPNNPTSEQLEASSKRANAVLERLKSGEDFRRTAIASSSGPKALEGGIWDYMNINE 240

Query: 242 LHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQ----NT 293
           +   F + +    + +   P  T  G   I I D R       E     ++  +     +
Sbjct: 241 MPTLFAEVINGAKKGDIIGPIKTGAGFHIIKIMDARGLQTKEIEEVRARHILLKPSPILS 300

Query: 294 PTKIEKHEAEYVKKLRS 310
             + +    +++K++RS
Sbjct: 301 EDRAKAMLEQFLKQIRS 317



 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 84/295 (28%), Gaps = 29/295 (9%)

Query: 49  EVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGI---TFDSNTVNYF 105
           E IT G+I +     ++Q    E+  +    LI E   K    + G       +N  +  
Sbjct: 136 EEITLGEIQRIQVQRRIQVSPQEITGLVK--LIQEQGMKDVEYQIGHILIDVPNNPTSEQ 193

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGD-------------NHFKQYLAIQSIWPDVVKNDF 152
               ++      E   S  D +                   +     + +++ +V+    
Sbjct: 194 LEASSKRANAVLERLKSGEDFRRTAIASSSGPKALEGGIWDYMNINEMPTLFAEVINGAK 253

Query: 153 MLKYGNLEMEIPANKQKMKN-------ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
                                        + E   R +L        +++          
Sbjct: 254 KGDIIGPIKTGAGFHIIKIMDARGLQTKEIEEVRARHILLKPSPILSEDRAKAMLEQFL- 312

Query: 206 EESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVT 263
           ++ R    K  +   +++         G+  +   S   P+F   L   S +  + P+ T
Sbjct: 313 KQIRSGEAKFEDLARQYSEDPGSATKGGELGWAEPSIYVPEFAQTLNSLSPDQISEPFRT 372

Query: 264 QKGVEYIAICDKRDLGG-EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
             G     + ++R     +              K  +    ++ ++R++A I  +
Sbjct: 373 THGWHITQLEERRKTDATDQFNTNRAHQLIFRRKFNEELQNWLDEMRADAYIEVF 427


>gi|127511815|ref|YP_001093012.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella loihica
           PV-4]
 gi|126637110|gb|ABO22753.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella loihica
           PV-4]
          Length = 434

 Score =  113 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 37/310 (11%), Positives = 104/310 (33%), Gaps = 15/310 (4%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI---- 68
           +K        ++   +   +        R+   IN  ++ + +I   +  +K        
Sbjct: 1   MKPCKQLIFALLTLAMSHGAMAENVPLDRVTVQINEGIVLESEIVNMLKTVKANAKAAGQ 60

Query: 69  ----NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
               +  L    ++ LIV  L+ Q  ++ G+      ++      A+   ++ E     +
Sbjct: 61  SLPSDKALRTQVIERLIVTRLQLQMADRIGLHIGDLQLDQTIENIAKEQKMTPEMMREKV 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           + +G+  + +++ L  +    ++ +     +      EI +  + ++   +++   +   
Sbjct: 121 EAEGMSWSQYREQLREEITLGEIQRIQVQRRIQVSPQEINSLVKLIEEQGMQQVEYQIGH 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESD 241
             I      N   ++     A     RL  + +        +S    +  G   Y+  ++
Sbjct: 181 ILIEVPNSPNSEQLEAASSRANAVLKRLQDNADFKQTAIASSSGPKALEGGIWDYMNVNE 240

Query: 242 LHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKI 297
           +   F + L+     +   P  +  G   I + D R       +     ++  + +P   
Sbjct: 241 MPTLFAELLVGAKTGDIIGPVRSGAGFHIIKVMDARGLQTKEIDEVRSRHILIKPSPILS 300

Query: 298 EKHEAEYVKK 307
           E+     + K
Sbjct: 301 EERAKAMLDK 310



 Score = 85.9 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 79/294 (26%), Gaps = 27/294 (9%)

Query: 49  EVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS--------- 99
           E IT G+I +     ++Q    E+  +    LI E   +Q   + G              
Sbjct: 136 EEITLGEIQRIQVQRRIQVSPQEINSLVK--LIEEQGMQQVEYQIGHILIEVPNSPNSEQ 193

Query: 100 --------NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
                   N V      +A     +    S     +G   ++             +V   
Sbjct: 194 LEAASSRANAVLKRLQDNADFKQTAIASSSGPKALEGGIWDYMNVNEMPTLFAELLVGAK 253

Query: 152 FMLKYGNLEM-----EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
                G +        I     +       + +    +   P   L  +       K A 
Sbjct: 254 TGDIIGPVRSGAGFHIIKVMDARGLQTKEIDEVRSRHILIKPSPILSEERAKAMLDKFAA 313

Query: 207 ESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQ 264
           + R           +++         G+  +   +   P F   L     N  + P+ + 
Sbjct: 314 QLRRGEADFATLARQYSEDPGSAAKGGELGWADPTVYVPAFAQTLGALKINEISEPFRSS 373

Query: 265 KGVEYIAICDKRDLGG-EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            G   + + ++R     +              K  +    ++ ++R+ A I  +
Sbjct: 374 HGWHIVQLEERRKTDATDKFNTNRAHQLIFRRKFNEELQNWLDEMRAEAYIEVF 427


>gi|87119766|ref|ZP_01075663.1| peptidyl-prolyl cis-trans isomerase SurA [Marinomonas sp. MED121]
 gi|86165242|gb|EAQ66510.1| peptidyl-prolyl cis-trans isomerase SurA [Marinomonas sp. MED121]
          Length = 416

 Score =  113 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 40/304 (13%), Positives = 94/304 (30%), Gaps = 10/304 (3%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI----NG 70
           +     +L    ++      +      I   I+ + I D DI+ R +++K +      N 
Sbjct: 1   MNKIATLLCSSLLIASSFSVAATKVDGISAIIDSKAILDSDINTRFSIIKDRVPGGKIND 60

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
            + +  + ++I ETL+     + GI       N   +  A    L        L +QGI 
Sbjct: 61  NVRRQILNQMINETLQTNYANRLGIRISEQEANQAVLNVAAKMKLDLAGLKVALAQQGID 120

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
            + ++  +  + +   V       +    + EI       + +      +      I DN
Sbjct: 121 YSIYRNQIKNEILLGKVKGQVVRQRIIISDQEIEDFLNSDEALAKNNDQVHLRHILIRDN 180

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL 250
                     +I   +E         ++   ++S    +  G   +   + L   F   L
Sbjct: 181 ASS---QSADQILTIKEKITNEQDFIDQAIAYSSGQAALEGGDLGWRPLNQLPLLFIKSL 237

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGG---EIALKAYLSAQNTPTKIEKHEAEYVKK 307
             +      P  +  G   + + +K+       E     ++       + +      ++ 
Sbjct: 238 NANNGPLYGPIESSAGQHLLWLKEKKTASNALQEQTKSRHILLSANEIRNQTQTKAALEA 297

Query: 308 LRSN 311
           +   
Sbjct: 298 IYQR 301



 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/270 (11%), Positives = 89/270 (32%), Gaps = 7/270 (2%)

Query: 50  VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
           +I+D +I   +   +    N + +      LI +    Q  ++     +  T    F+  
Sbjct: 147 IISDQEIEDFLNSDEALAKNND-QVHLRHILIRDNASSQSADQILTIKEKITNEQDFIDQ 205

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
           A                    +     ++   +     +        G     +   K+K
Sbjct: 206 AIAYSSGQAALEGGDLGWRPLNQLPLLFIKSLNANNGPLYGPIESSAGQH---LLWLKEK 262

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHD 228
                  +   ++    +  N+++NQ   +  ++   +  ++        ++F+      
Sbjct: 263 KTASNALQEQTKSRHILLSANEIRNQTQTKAALEAIYQRLMKGQDFATLAKEFSEDKGSA 322

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKA- 286
           +  G   +  +  + P+F+ ++K +     + P+ +Q G   + +  +R       +K  
Sbjct: 323 LKGGDLDWTAKGTMVPEFEAVMKATSVGEISKPFRSQYGWHILKVEGRRSQDISDKIKQV 382

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                    K +   ++++ +L+S A I  
Sbjct: 383 NAKNTLIARKQDLVLSQWLDELKSTAFIDI 412


>gi|73540204|ref|YP_294724.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
           JMP134]
 gi|121956447|sp|Q475Q3|SURA_RALEJ RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|72117617|gb|AAZ59880.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
           JMP134]
          Length = 499

 Score =  113 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 38/305 (12%), Positives = 86/305 (28%), Gaps = 29/305 (9%)

Query: 36  WAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------LEKIAVQELIVETLKK 87
             +   +   +N  VIT  ++  R   ++ Q             L    ++ LI+E ++ 
Sbjct: 79  SQLVDEVVAVVNNSVITRRELLDRADEIEAQLRTANRPAPPRADLLGEVLERLIMERVQT 138

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           Q  + +GI      ++      A+   LSA +    ++  G+    ++  L  Q     +
Sbjct: 139 QAAQDAGIKVTDQELDRAIESVAQQNRLSATELRRRVEASGMTWTKYRDELRKQVQVIRL 198

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITV------REYLIRTVLFSIPDNKLQNQGFVQKR 201
            + +   K    + EI                     + + ++    +     +  +QK+
Sbjct: 199 REREVDSKVQVYDGEIDNYLAARGGQGAAATGPTEFNVSQILVRVPENASDAQKQELQKK 258

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP- 260
            +   +            +  +        G   +     L   F N +   Q     P 
Sbjct: 259 AEQLLKQAQGGADFAQLAQANSQGPEAAQGGAIGFREIGRLPALFANAVVDLQPGAVAPE 318

Query: 261 -YVTQKGVEYIAICDKR-------------DLGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
              +  G   + +  KR                       ++  +  P   E      + 
Sbjct: 319 VVESANGFHILKLTAKRVAPASTSASSPAAASRITQTQVRHILIRTGPNMPEAEARRQLG 378

Query: 307 KLRSN 311
            LR  
Sbjct: 379 TLRDR 383



 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 56/140 (40%), Gaps = 2/140 (1%)

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
             +     I       +   ++++    +         +  ++F+      + G+  ++ 
Sbjct: 354 QTQVRHILIRTGPNMPEAEARRQLGTLRDRITHGGDFADAAKRFSQDGSAQAGGELGWVS 413

Query: 239 ESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG-GEIALKAYLSAQNTPTK 296
             +L P+F+  + +      + P VTQ GV  I + ++R+        + +  A+    K
Sbjct: 414 PGELVPEFEQAMNRLRPGEISEPVVTQFGVHLIQVENRRETEMAPEKQRDFARAEIREQK 473

Query: 297 IEKHEAEYVKKLRSNAIIHY 316
           +     ++V++LRS A + Y
Sbjct: 474 LRAAYDDWVRQLRSQAYVEY 493


>gi|163750061|ref|ZP_02157304.1| survival protein surA [Shewanella benthica KT99]
 gi|161330118|gb|EDQ01100.1| survival protein surA [Shewanella benthica KT99]
          Length = 434

 Score =  113 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 36/314 (11%), Positives = 102/314 (32%), Gaps = 15/314 (4%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK----- 67
           +K      + I+   +  ++        R+   IN  ++ + +I+  +  +K        
Sbjct: 1   MKPCKHLIIAILSLAMSHMALAENTTLDRVSVQINEGIVLESEITNMVKTVKANATAAGQ 60

Query: 68  ---INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
               +  L    ++ LI+  L+ Q  ++ G+      ++      A+   L+ E     +
Sbjct: 61  SLPSDQALRTQVIERLIMTRLQMQMADRIGLHIGDLQLDQTIGNIAKEQKLTVEQMRQKI 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
             +G+    +++ L  +    ++ +     +      EI      ++   +++   +   
Sbjct: 121 SNEGMNWGQYREQLREEITLGEIQRIQVQRRIQVSPQEISNLVNMIEEQGLKQIEFQIGH 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESD 241
             I          ++K    A     R+    +        ++    +  G   Y+  ++
Sbjct: 181 ILIEIPNNPTSEQLEKASNRANTVLDRVKDSGDFRRMAIAASAGPKALEGGIWDYMNINE 240

Query: 242 LHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKI 297
           +   F + L    + +   P  +  G   I + D R       +     ++  + +P   
Sbjct: 241 MPTLFAEVLSNAKKGDIIGPIRSGAGFHIIKVIDARGLQTKEVDEVRSRHILVKPSPILS 300

Query: 298 EKHEAEYVKKLRSN 311
           E+     + K    
Sbjct: 301 EERAKAMLDKFVKQ 314



 Score = 83.6 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/294 (10%), Positives = 81/294 (27%), Gaps = 27/294 (9%)

Query: 49  EVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGI---TFDSNTVNYF 105
           E IT G+I +     ++Q    E+  +    +I E   KQ   + G       +N  +  
Sbjct: 136 EEITLGEIQRIQVQRRIQVSPQEISNLV--NMIEEQGLKQIEFQIGHILIEIPNNPTSEQ 193

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFK--------QYLAIQSIWPDVVKNDFMLKYG 157
             + +       +      D + +               +  +       +  + +    
Sbjct: 194 LEKASNRANTVLDRVKDSGDFRRMAIAASAGPKALEGGIWDYMNINEMPTLFAEVLSNAK 253

Query: 158 NLEME-----------IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
             ++            I     +       + +    +   P   L  +       K  +
Sbjct: 254 KGDIIGPIRSGAGFHIIKVIDARGLQTKEVDEVRSRHILVKPSPILSEERAKAMLDKFVK 313

Query: 207 ESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQ 264
           + R           +++         G+  +   S   P F     +   N  + P+ + 
Sbjct: 314 QIRAGDADFAALARQYSEDPGSGAKGGELGWADPSVYVPAFSQALNELKVNEISEPFRSS 373

Query: 265 KGVEYIAICDKRDLGG-EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            G   + + ++R     +              K  +    ++ ++R+ A I  +
Sbjct: 374 HGWHIVQLEERRTTDATDKFNTNKAHQLIFRRKFNEELQAWLDEMRAEAYIEVF 427


>gi|56694986|ref|YP_165332.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Ruegeria pomeroyi DSS-3]
 gi|56676723|gb|AAV93389.1| PPIC-type PPIASE domain protein [Ruegeria pomeroyi DSS-3]
          Length = 276

 Score =  113 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 34/296 (11%), Positives = 82/296 (27%), Gaps = 44/296 (14%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           +     +   V+ ++ A +  +   +NGE IT G +   IA   L +   +L    + + 
Sbjct: 4   LAFALVMALPVAAETKAEADTVVARVNGEEITLGHMI--IARASLPQQYQQLPDDVLFDG 61

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I++ L                                        +         +    
Sbjct: 62  ILDQL----------------------------VQQTLLKQQQKGETPKQIVLSLENEER 93

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
             +  + ++    +      ++   + Q        EY    +L    D           
Sbjct: 94  SLLAGETIEEIMAVATTETAIQAAYDAQYADGFGGEEYNASHILVPSEDEAKA------- 146

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN 259
                +E            ++ ++     + G   +     + P+F+  +   +    ++
Sbjct: 147 ----VKELLDNGADFAATAKEKSTGPSGPNGGALGWFGAGAMVPEFEQAVVALNAGQVSD 202

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           P  TQ G   I + DKR    E      +  +      +      + +L  ++ I 
Sbjct: 203 PVQTQFGWHVIILNDKR--KSEAPALDEVRDELAGRIQQDAIEARLAELTKDSEIE 256


>gi|304410420|ref|ZP_07392038.1| SurA domain protein [Shewanella baltica OS183]
 gi|307304512|ref|ZP_07584262.1| SurA domain protein [Shewanella baltica BA175]
 gi|304350904|gb|EFM15304.1| SurA domain protein [Shewanella baltica OS183]
 gi|306911914|gb|EFN42338.1| SurA domain protein [Shewanella baltica BA175]
          Length = 434

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 38/317 (11%), Positives = 104/317 (32%), Gaps = 19/317 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +K        +    +   +  +     R+   IN  ++ + +I+  I  +K        
Sbjct: 1   MKPSKHLIFALFALAISQPTLAAPQPLDRVAVQINDGIVLESEITNMIDTVKANAKTANQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L    ++ LI+  L+ Q  ++ G+      ++      AR   +S       +
Sbjct: 61  SLPSDSALRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQKMSVAQMQQKI 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           + +G+  + +++ L  +    ++ +     +      EI +  + ++   +++   +   
Sbjct: 121 ESEGLSFSQYREQLREEITLGEIQRIQVQRRIQVSPQEITSLVKLIQEQGMKDVEYKIGH 180

Query: 185 FSIPDNKLQNQGFVQ---KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             I          ++   KR     E               +S    +  G   Y+  ++
Sbjct: 181 ILIDVPNNPTSEQLESSSKRANIVLERLKSGEDFRRTAIASSSGPKALEGGIWDYMNINE 240

Query: 242 LHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQ----NT 293
           +   F + +      +   P  +  G   I I D R       E     ++  +     +
Sbjct: 241 MPTLFAEVINGAKTGDIIGPIKSGAGFHIIKIMDARGLQTKEIEEVRARHILLKPSPILS 300

Query: 294 PTKIEKHEAEYVKKLRS 310
             + +    +++K++RS
Sbjct: 301 EDRAKAMLEQFLKQIRS 317



 Score = 84.0 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/295 (12%), Positives = 84/295 (28%), Gaps = 29/295 (9%)

Query: 49  EVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGI---TFDSNTVNYF 105
           E IT G+I +     ++Q    E+  +    LI E   K    K G       +N  +  
Sbjct: 136 EEITLGEIQRIQVQRRIQVSPQEITSLVK--LIQEQGMKDVEYKIGHILIDVPNNPTSEQ 193

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGD-------------NHFKQYLAIQSIWPDVVKNDF 152
               ++   +  E   S  D +                   +     + +++ +V+    
Sbjct: 194 LESSSKRANIVLERLKSGEDFRRTAIASSSGPKALEGGIWDYMNINEMPTLFAEVINGAK 253

Query: 153 MLKYGNLEMEIPANKQKMKN-------ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
                                        + E   R +L        +++          
Sbjct: 254 TGDIIGPIKSGAGFHIIKIMDARGLQTKEIEEVRARHILLKPSPILSEDRAKAMLEQFL- 312

Query: 206 EESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVT 263
           ++ R    K  +   +++         G+  +   S   P+F   L     +  + P+ T
Sbjct: 313 KQIRSGEAKFEDLARQYSEDPGSATKGGELGWAEPSIYVPEFAQTLNSLKTDQISEPFRT 372

Query: 264 QKGVEYIAICDKRDLGG-EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
             G     + ++R     +              K  +    ++ ++RS+A I  +
Sbjct: 373 THGWHITQLEERRKTDATDQFNSNRAHQLIFRRKFNEELQNWLDEMRSDAYIEIF 427


>gi|119944807|ref|YP_942487.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas
           ingrahamii 37]
 gi|119863411|gb|ABM02888.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas
           ingrahamii 37]
          Length = 439

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 41/317 (12%), Positives = 114/317 (35%), Gaps = 18/317 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIV-SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
           +K++    + ++F  +     +       +I   +N E+I   D+ +    ++ +  N +
Sbjct: 1   MKVIKNILLPLLFASLAATQVFAEKIPLDKIEAVVNQEIILSSDLQRAQLDIQERYKNSD 60

Query: 72  --------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
                   L K  + +LI + L+ Q  ++ G+  +   +     Q A+  GL++E   + 
Sbjct: 61  QTLPSGDKLTKQILDKLITDRLQLQIAQRIGLRINDAQLQQTVQQIAQKEGLTSEQLQAK 120

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
           L+KQG     F   +  +    ++ + +   +    + ++    +++     +      V
Sbjct: 121 LEKQGKNYAAFVDTIRDELTINEIRQIEVRRRITISDQDVEQMVKRINAEGQKNTQFSFV 180

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLES 240
                 +K  +    Q+  K A++   ++    N        +        G   +   +
Sbjct: 181 HLLFKLDKESSAAEQQRIEKKAQDLVKKIKLGANASQLALLNSEGPKASEGGDWGWRTIN 240

Query: 241 DLHPQFQ---NLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP--- 294
           ++   F    N  + ++ +   P+ +  G+  I I DK+     + ++            
Sbjct: 241 EMPTLFAGIFNEQQTNKGDVIGPFKSDLGLHIIKIMDKKGAQNVMTVEVNARHILIKSNI 300

Query: 295 TKIEKHEAEYVKKLRSN 311
              ++   + +   R +
Sbjct: 301 ILSDQKAQKLLTGYRQD 317



 Score = 76.6 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/275 (10%), Positives = 78/275 (28%), Gaps = 9/275 (3%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIA-VQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
           I+D D+ + +  +  +           +   + +     E ++                +
Sbjct: 155 ISDQDVEQMVKRINAEGQKNTQFSFVHLLFKLDKESSAAEQQRIEKKAQDLVKKIKLGAN 214

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME-----IP 164
           A    L   +     +    G     +   + +   +  + +     G  + +     I 
Sbjct: 215 ASQLALLNSEGPKASEGGDWGWRTINEMPTLFAGIFNEQQTNKGDVIGPFKSDLGLHIIK 274

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
              +K     +   +    +    +  L +Q   +      ++             +++ 
Sbjct: 275 IMDKKGAQNVMTVEVNARHILIKSNIILSDQKAQKLLTGYRQDIINGKKSFAALAREYSQ 334

Query: 225 KI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDL-GGE 281
                V  G   +   S   P+F+ L         + P+ T  G   + + +KR+    E
Sbjct: 335 DPGSAVKGGDLGWADPSMYVPEFKELALSLPVGEISQPFRTMHGWHILEVINKRESDTTE 394

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            A K    +     +       ++ ++R  A I  
Sbjct: 395 QATKQKAYSLLFQQRFPAEVYAWMNEIRQEAYIKI 429


>gi|332524713|ref|ZP_08400912.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rubrivivax
           benzoatilyticus JA2]
 gi|332108021|gb|EGJ09245.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rubrivivax
           benzoatilyticus JA2]
          Length = 436

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 93/289 (32%), Gaps = 15/289 (5%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALL-------KLQKINGELEKIAVQELIVETLKKQEI 90
               I   +N E +T  ++  R+  +         Q     + K  + +LI E       
Sbjct: 32  NGDYIVAIVNQEAVTAAEVESRVQRVLQAAARSGAQPSLEVVRKRVLDDLIEERAIVTYA 91

Query: 91  EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
             SGI  +   V+      A    L+A+     L   G+    F+  L  Q +   V + 
Sbjct: 92  RDSGIRVEDPEVDRAIQSVAAQNQLTADQLRERLRADGLDYARFRANLRDQILIERVRER 151

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREY--LIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
           +   +    + E+     +    T  +    I  +L  +P+   +     +K   +   +
Sbjct: 152 EVYQRIRVTDGEVDRYLAQQNIATQADVELNIAQILVIVPEGGDEQVLAARKARAEQALA 211

Query: 209 RLRLPKDCNK-LEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP--YVTQK 265
           R+R  +D      + +   +    G       + L   F   ++        P    +  
Sbjct: 212 RVRGGEDFAAVAREISEDANQERGGVIGLRPSARLPDLFVEAVRDVPAGEVKPELVRSGA 271

Query: 266 GVEYIAICDKRD---LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           G   + + ++++   +        ++  + +     +  A+ + + R  
Sbjct: 272 GFHVLKVVERKETMAVRVTQTHARHILVRTSERVSPEMAAQRLAEFRRQ 320



 Score = 98.2 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 48/141 (34%), Gaps = 3/141 (2%)

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK-LEKFASKIHDVSIGKAQYL 237
                   +  ++  +     +R+ +     +   +       +++      S G   + 
Sbjct: 291 QTHARHILVRTSERVSPEMAAQRLAEFRRQIVSGQRRFEDVARQYSEDGSAPSGGDLGWF 350

Query: 238 LESDLHPQFQNLLKKSQNN-TTNPYVTQKGVEYIAICDKRDLGGEI-ALKAYLSAQNTPT 295
               + P+F+  + +      + P  ++ GV  I + ++RD   E   ++          
Sbjct: 351 APGTMVPEFEEAMNRLPIEGVSPPVRSRFGVHLIQVLERRDTAVEARQVREQARNVLRER 410

Query: 296 KIEKHEAEYVKKLRSNAIIHY 316
           K +    E+ K LR  + I +
Sbjct: 411 KFDDAYTEWAKDLRDRSYIEF 431


>gi|114048604|ref|YP_739154.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-7]
 gi|121956474|sp|Q0HS08|SURA_SHESR RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|113890046|gb|ABI44097.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-7]
          Length = 434

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 38/317 (11%), Positives = 104/317 (32%), Gaps = 19/317 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +K        +    +   +  +     R+   IN  ++ + +I+  I  +K        
Sbjct: 1   MKPSKHLIFALFALAISQPTMAAPQPIDRVAVQINDGIVLESEITNMIDTVKANARAANQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L    ++ LI+  L+ Q  ++ G+      ++      AR   ++       +
Sbjct: 61  SLPSDSALRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQKMTVAQMQQKI 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           + +G+    +++ L  +    ++ +     +      EI    + ++   +++   +   
Sbjct: 121 ESEGLSFGQYREQLREEITLGEIQRIQVQRRIQVSPQEITGLVKLIQEQGMKDVEYQIGH 180

Query: 185 FSIPDNKLQNQGFVQ---KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             I      N   ++   KR     E               +S    +  G   Y+  ++
Sbjct: 181 ILIDVPNNPNSEQLEASSKRANAVLERLKSGEDFRRTAIASSSGPKALEGGIWDYMNINE 240

Query: 242 LHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQ----NT 293
           +   F + +    + +   P  +  G   I I D R       E     ++  +     +
Sbjct: 241 MPTLFAEVINGAKKGDIIGPIKSGAGFHIIKIMDARGLQTKEIEEVRARHILLKPSPILS 300

Query: 294 PTKIEKHEAEYVKKLRS 310
             + +    +++K++RS
Sbjct: 301 EDRAKAMLEQFLKQIRS 317



 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 84/295 (28%), Gaps = 29/295 (9%)

Query: 49  EVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGI---TFDSNTVNYF 105
           E IT G+I +     ++Q    E+  +    LI E   K    + G       +N  +  
Sbjct: 136 EEITLGEIQRIQVQRRIQVSPQEITGLVK--LIQEQGMKDVEYQIGHILIDVPNNPNSEQ 193

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGD-------------NHFKQYLAIQSIWPDVVKNDF 152
               ++      E   S  D +                   +     + +++ +V+    
Sbjct: 194 LEASSKRANAVLERLKSGEDFRRTAIASSSGPKALEGGIWDYMNINEMPTLFAEVINGAK 253

Query: 153 MLKYGNLEMEIPANKQKMKN-------ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
                                        + E   R +L        +++          
Sbjct: 254 KGDIIGPIKSGAGFHIIKIMDARGLQTKEIEEVRARHILLKPSPILSEDRAKAMLEQFL- 312

Query: 206 EESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVT 263
           ++ R    K  +   +++         G+  +   S   P+F   L   S +  + P+ T
Sbjct: 313 KQIRSGEAKFEDLARQYSEDPGSATKGGELGWAEPSIYVPEFAQTLNSLSPDQISEPFRT 372

Query: 264 QKGVEYIAICDKRDLGG-EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
             G     + ++R     +              K  +    ++ ++R++A I  +
Sbjct: 373 THGWHITQLEERRKTDATDQFNTNRAHQLIFRRKFNEELQNWLDEMRADAYIEVF 427


>gi|197105171|ref|YP_002130548.1| peptidyl-prolyl cis-trans isomerase family protein
           [Phenylobacterium zucineum HLK1]
 gi|196478591|gb|ACG78119.1| peptidyl-prolyl cis-trans isomerase family protein
           [Phenylobacterium zucineum HLK1]
          Length = 468

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 110/290 (37%), Gaps = 16/290 (5%)

Query: 37  AMSSRIRTTINGEVITDGDISKRIALL-------KLQKINGELEKIAVQELIVETLKKQE 89
            +S  +   +N E+I+  D+++R+ LL         ++   + ++ A+  L+ E L+ QE
Sbjct: 74  GISESVAAVVNDEIISTYDLAQRMRLLIATSGVQPTEQTLPQFQREALVSLVDERLQFQE 133

Query: 90  ------IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
                  +K  I      V+      AR   ++ E F SFL  +GIG +  +Q +  Q  
Sbjct: 134 LRRVEREQKIDIVATDEEVDEEIADMARQNNMTREQFLSFLGARGIGVDTLRQQIRAQVS 193

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
           W   ++  +  +    + +I A + +++    +    +     I  +++       +  +
Sbjct: 194 WARWIRGRYGSRLRIGDDQIAATQARLEAAAAK-PQYQISEVLIDASRVGGMQQAMQGAQ 252

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYV 262
                  +         +F++     + G A ++ + ++  + + +  +      + P  
Sbjct: 253 QLVAQMQQGAPFPAVARQFSALPTAAAGGDAGWISQGEMPTEVEQVLEQMRPGQLSQPIP 312

Query: 263 TQKGVEYIAICDKR-DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            + GV  + + DKR   G  +      +        E      ++ LR  
Sbjct: 313 VRDGVYIVYLRDKRAGGGATLVNLKQAAVPLAQGADEAEARAKLEALRPK 362



 Score = 80.1 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 45/124 (36%), Gaps = 2/124 (1%)

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
                  +     E  R ++       E+ A+ +  V  G       +DL P F+   + 
Sbjct: 344 AQGADEAEARAKLEALRPKITSCETL-EQAAAGVEGVVAGDLGEAEVADLAPAFRQAAET 402

Query: 253 -SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
                 + P  T  G+  +A+C +R  G     +  +  +    ++      Y++ LR++
Sbjct: 403 LQIGQVSEPIRTNAGLHLVAVCGRRAAGEAQVDREQIENRLYGQQLSMIARRYMRDLRNS 462

Query: 312 AIIH 315
           A I 
Sbjct: 463 ATIE 466


>gi|86136812|ref|ZP_01055390.1| PPIC-type PPIASE domain protein [Roseobacter sp. MED193]
 gi|85826136|gb|EAQ46333.1| PPIC-type PPIASE domain protein [Roseobacter sp. MED193]
          Length = 283

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/298 (11%), Positives = 76/298 (25%), Gaps = 50/298 (16%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN---GELEKIAVQ 78
            +   +   +   +   ++ +  T+NGE IT G +      L  Q        L    + 
Sbjct: 12  ALAVFMALPLPALAAPHANTVIATVNGEEITLGHMIMARDSLPDQYKQLPDDVLYNAILD 71

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
           +L+ +T  KQE+                                             +  
Sbjct: 72  QLVQQTALKQELH---------------------------------GGVPHYVKLAVENE 98

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
               +  +V++           +      +        E+    +L              
Sbjct: 99  MRALLAANVIETVMKSASDEEAVRQAYEDKYSDGDGGDEFNAAHIL-----------VET 147

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNT 257
           Q+   + +             ++ ++     + G   +     + P+F+  +        
Sbjct: 148 QEDALEIKSELDTGADFSIMAKERSTGPSGPNGGDLGWFTRGRMVPEFEAAVLDLRAGEI 207

Query: 258 TNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           + P  TQ G   I + ++R           +    +           V  L + AII 
Sbjct: 208 SAPVETQFGWHLILLKERRKTAA--PAFEEVRETLSQELQNAAVEARVSDLTAAAIIE 263


>gi|152999582|ref|YP_001365263.1| SurA domain-containing protein [Shewanella baltica OS185]
 gi|160874201|ref|YP_001553517.1| SurA domain-containing protein [Shewanella baltica OS195]
 gi|217974467|ref|YP_002359218.1| SurA domain-containing protein [Shewanella baltica OS223]
 gi|151364200|gb|ABS07200.1| SurA domain protein [Shewanella baltica OS185]
 gi|160859723|gb|ABX48257.1| SurA domain [Shewanella baltica OS195]
 gi|217499602|gb|ACK47795.1| SurA domain protein [Shewanella baltica OS223]
 gi|315266433|gb|ADT93286.1| SurA domain [Shewanella baltica OS678]
          Length = 434

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 38/317 (11%), Positives = 104/317 (32%), Gaps = 19/317 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +K        +    +   +  +     R+   IN  ++ + +I+  I  +K        
Sbjct: 1   MKPSKHLIFALFALAISQPTLAAPQPLDRVAVQINDGIVLESEITNMIDTVKANAKTANQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L    ++ LI+  L+ Q  ++ G+      ++      AR   +S       +
Sbjct: 61  SLPSDSALRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQKMSVAQMQQKI 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           + +G+  + +++ L  +    ++ +     +      EI +  + ++   +++   +   
Sbjct: 121 ESEGLSFSQYREQLREEITLGEIQRIQVQRRIQVSPQEITSLVKLIQEQGMKDVEYQIGH 180

Query: 185 FSIPDNKLQNQGFVQ---KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             I          ++   KR     E               +S    +  G   Y+  ++
Sbjct: 181 ILIDVPNNPTSEQLESSSKRANIVLERLKSGEDFRRTAIASSSGPKALEGGIWDYMNINE 240

Query: 242 LHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQ----NT 293
           +   F + +      +   P  +  G   I I D R       E     ++  +     +
Sbjct: 241 MPTLFAEVINGAKTGDIIGPIKSGAGFHIIKIMDARGLQTKEIEEVRARHILLKPSPILS 300

Query: 294 PTKIEKHEAEYVKKLRS 310
             + +    +++K++RS
Sbjct: 301 EDRAKAMLEQFLKQIRS 317



 Score = 83.6 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 84/295 (28%), Gaps = 29/295 (9%)

Query: 49  EVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGI---TFDSNTVNYF 105
           E IT G+I +     ++Q    E+  +    LI E   K    + G       +N  +  
Sbjct: 136 EEITLGEIQRIQVQRRIQVSPQEITSLVK--LIQEQGMKDVEYQIGHILIDVPNNPTSEQ 193

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGD-------------NHFKQYLAIQSIWPDVVKNDF 152
               ++   +  E   S  D +                   +     + +++ +V+    
Sbjct: 194 LESSSKRANIVLERLKSGEDFRRTAIASSSGPKALEGGIWDYMNINEMPTLFAEVINGAK 253

Query: 153 MLKYGNLEMEIPANKQKMKN-------ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
                                        + E   R +L        +++          
Sbjct: 254 TGDIIGPIKSGAGFHIIKIMDARGLQTKEIEEVRARHILLKPSPILSEDRAKAMLEQFL- 312

Query: 206 EESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVT 263
           ++ R    K  +   +++         G+  +   S   P+F   L     +  + P+ T
Sbjct: 313 KQIRSGEAKFEDLARQYSEDPGSATKGGELGWAEPSIYVPEFAQTLNSLKTDQISEPFRT 372

Query: 264 QKGVEYIAICDKRDLGG-EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
             G     + ++R     +              K  +    ++ ++RS+A I  +
Sbjct: 373 THGWHITQLEERRKTDATDQFNSNRAHQLIFRRKFNEELQNWLDEMRSDAYIEIF 427


>gi|124004175|ref|ZP_01689021.1| chaperone SurA, putative [Microscilla marina ATCC 23134]
 gi|123990245|gb|EAY29744.1| chaperone SurA, putative [Microscilla marina ATCC 23134]
          Length = 460

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 89/290 (30%), Gaps = 15/290 (5%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIV-SYKSWAMSSRIRTTINGEVITDGDISKR 59
           M   +   L  F   +    + +      +  +     +  +I   +N  +I + D+ +R
Sbjct: 1   MQQNIMQKL-IFKSYIKVLLLCLAIGFSSMSMAQGGGQLVDKIIAKVNNNIILESDLQQR 59

Query: 60  IALLKLQKI----NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
              +  Q        +L+   ++E+I++ L   + E   +      VN    +       
Sbjct: 60  YLEIISQSQTTAPEKDLKCKILEEMIIQKLLVAKAEIDSVIVSDIEVNLQLDRRIDYMLK 119

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV----VKNDFMLKYGNLEMEIPANKQKMK 171
           S       L+K         +      +   +    +  +          E+      + 
Sbjct: 120 SVGGEKQQLEKLYGKTMDQIKEDIRDILKEQMTVSKMNGEITSTVKITPKEVRQYFDSIP 179

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR---LRLPKDCNKLEKFASKI-H 227
             ++  +     +  I       +   QK  +  E+ R   ++        ++F+     
Sbjct: 180 KDSLPYFSDEVEVGHIVKIPEPTKEQKQKIRQKLEKIRGRLMKGEDFAQLAQEFSQDYVS 239

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR 276
               G   +       P+F+  + +  +N  +    TQ G   I + ++R
Sbjct: 240 AKQGGNLGWQTRGVFVPKFEAAVFRLKKNEISKVIETQLGFHVIQLLERR 289


>gi|148261232|ref|YP_001235359.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidiphilium cryptum
           JF-5]
 gi|146402913|gb|ABQ31440.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidiphilium cryptum
           JF-5]
          Length = 311

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 78/285 (27%), Gaps = 48/285 (16%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI---AVQELIVETLKKQEIEKSG 94
               +   ++G  I   D++K    L  Q  N   +++    +  L+ E     +  K+G
Sbjct: 52  QKDTVVAIVDGHDIHLSDVAKAAQDLPPQLQNAPPQELFPVLLNRLVDERALLVKARKAG 111

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
              D                                     +  A Q++    ++     
Sbjct: 112 TAKDPKVAAE------------------------------MKAAADQALERAYLRALVEP 141

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
           K  +  ++   +   +K     E   R +L              Q+  +       +  K
Sbjct: 142 KLTDAAVKAYYDAHYVKAKQPEEVKARQIL-----------VKTQQEAEKIIAQLGKGAK 190

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAI 272
                +K++      + G+  +  + ++   F +          T  P  +Q G   I  
Sbjct: 191 FSALAKKYSIDPGAKNGGELGWFTKDEMVKPFADAAFALKPGTYTKTPVHSQFGWHVIES 250

Query: 273 CDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
             KR+        A +  Q       K     ++  R    I  +
Sbjct: 251 QGKREKPV--PPLADVKDQIRQQITNKAVTAALEDARKGLDIKLF 293


>gi|220935188|ref|YP_002514087.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219996498|gb|ACL73100.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 270

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/304 (10%), Positives = 81/304 (26%), Gaps = 47/304 (15%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL-E 73
           L+T    + +             +S      +NG  I++ D    + L ++ +    L  
Sbjct: 9   LVTGLLTVTLITGCGRGEAPQAEISGEAVAMVNGVAISEADFQDFLNLQRMTRPGENLLP 68

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
              + E+I   L +Q   + G+  D +                                 
Sbjct: 69  DEVLDEMINMELLRQAALQQGLDRDPDIQRQV---------------------------- 100

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
             +      +   ++       Y   ++    ++Q              +L         
Sbjct: 101 --ERARTNLMVGALIDQRLNQDYTEEQLRAEYDRQIQAIDRTEYKARHILL--------- 149

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKK 252
                +   ++   +            + ++       G   +     + P F + +   
Sbjct: 150 ---DSEADAREVIAALEAGGDFQELAREHSTGPSGPMGGDLGWFTADAMVPAFSEAVQAM 206

Query: 253 SQNNTT-NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            + + +  P  T+ G   I + D R    E      +  +       +   +Y+  LR+ 
Sbjct: 207 EKGSYSNEPVQTEFGWHVILLEDTR--RSEPPPFEAVRDRVAQILDNRALQDYIGDLRTA 264

Query: 312 AIIH 315
           A I 
Sbjct: 265 AKIE 268


>gi|239832961|ref|ZP_04681290.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ochrobactrum
           intermedium LMG 3301]
 gi|239825228|gb|EEQ96796.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ochrobactrum
           intermedium LMG 3301]
          Length = 456

 Score =  112 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 88/293 (30%), Gaps = 48/293 (16%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ---KINGELEKIAVQELIVETL 85
           P  +       +++  T+NG+ IT G++ +    L  Q       +    A+  LI    
Sbjct: 175 PAAAPAEKEDPTKVLATVNGKDITVGEVDQAAGDLDPQFSRLPAEQRRLAALAALIDIKA 234

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
              E EK  +       +                                ++L  +++  
Sbjct: 235 MAGEAEKEKLDQSKEFKDR------------------------------MEFLRERALHN 264

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
           +  K+  + K  + ++    +K+        E   R +L    +                
Sbjct: 265 EYFKDAVVDKISDDDVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA-----------I 313

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT-NPYVT 263
            +      K  +  ++ ++     + G   Y  E  + P+F+           T  P  +
Sbjct: 314 IKKLAGGAKFEDLAKESSTDGTASNGGDLGYFTEGQMVPEFEKAAFALKPGEYTKEPVQS 373

Query: 264 QKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           Q G   I + D+R           +  Q     + +   E VKKLR    I Y
Sbjct: 374 QFGFHVIQLEDRRTKQP--PAFDQVKDQIRSIIMRERYVETVKKLRDGMKIDY 424


>gi|298292757|ref|YP_003694696.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Starkeya novella DSM
           506]
 gi|296929268|gb|ADH90077.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Starkeya novella DSM
           506]
          Length = 337

 Score =  112 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 84/278 (30%), Gaps = 30/278 (10%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS 99
             +  T+NG  IT GD++   A L  Q +  +L+  A  E ++  L            D 
Sbjct: 64  DTVLATVNGAAITRGDVNAAAAEL-AQNLPPQLQGPARDEYVLGFLIDLTAMAQAAEAD- 121

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
                                      Q         ++  + +    ++        + 
Sbjct: 122 ------------------------KLDQTPAFKQQLDFIRKRVLMQAALEKATKAALTDD 157

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
            M+    +   +     E   R +LF    +  +     +K+ +D E    +        
Sbjct: 158 AMKKTYEEAVKQQKPEEEVHARHILFRASPDDKEASAAAEKKAQDVEARLKKGEDFATLA 217

Query: 220 EKFASKIHDVS-IGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
           ++           G   +  +  + P+F +          + P  TQ G   I + +KR+
Sbjct: 218 KQLTEDPSGKQDGGDLGFFAKEQMVPEFAEVAFAMKPGEVSKPVKTQFGWHVIKVEEKRE 277

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                     +  Q      +K +AE V+K R  A + 
Sbjct: 278 KP--TPTFDEVKPQIEQFLAQKAQAEAVQKTREAAKVE 313


>gi|117921645|ref|YP_870837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           ANA-3]
 gi|117613977|gb|ABK49431.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           ANA-3]
          Length = 434

 Score =  112 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 37/317 (11%), Positives = 105/317 (33%), Gaps = 19/317 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +K        +    +   +  +     R+   IN  ++ + +I+  I  +K        
Sbjct: 1   MKPSKHLIFALFALAISQPTMAAPQPIDRVAVQINDGIVLESEITNMIDTVKANARAANQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L    ++ LI+  L+ Q  ++ G+      ++      AR   ++       +
Sbjct: 61  SLPSDSALRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQKMTVAQMQQKI 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           + +G+  + +++ L  +    ++ +     +      EI    + ++   +++   +   
Sbjct: 121 ESEGLSFSQYREQLREEITLGEIQRIQVQRRIQVSPQEITGLVKLIQEQGMKDVEYQIGH 180

Query: 185 FSIPDNKLQNQGFVQ---KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             I      +   ++   KR     E               +S    +  G   Y+  ++
Sbjct: 181 ILIDVPNNPSSEQLEASSKRANAVLERLKSGEDFRRTAIASSSGPKALEGGIWDYMNINE 240

Query: 242 LHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQ----NT 293
           +   F + +    + +   P  +  G   I I D R       E     ++  +     +
Sbjct: 241 MPTLFAEVINGAKKGDIIGPIKSGAGFHIIKIMDARGLQTKEIEEVRARHILLKPSPILS 300

Query: 294 PTKIEKHEAEYVKKLRS 310
             + +    +++K++RS
Sbjct: 301 EDRAKAMLEQFLKQIRS 317



 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 84/295 (28%), Gaps = 29/295 (9%)

Query: 49  EVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGI---TFDSNTVNYF 105
           E IT G+I +     ++Q    E+  +    LI E   K    + G       +N  +  
Sbjct: 136 EEITLGEIQRIQVQRRIQVSPQEITGLVK--LIQEQGMKDVEYQIGHILIDVPNNPSSEQ 193

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGD-------------NHFKQYLAIQSIWPDVVKNDF 152
               ++      E   S  D +                   +     + +++ +V+    
Sbjct: 194 LEASSKRANAVLERLKSGEDFRRTAIASSSGPKALEGGIWDYMNINEMPTLFAEVINGAK 253

Query: 153 MLKYGNLEMEIPANKQKMKN-------ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
                                        + E   R +L        +++          
Sbjct: 254 KGDIIGPIKSGAGFHIIKIMDARGLQTKEIEEVRARHILLKPSPILSEDRAKAMLEQFL- 312

Query: 206 EESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVT 263
           ++ R    K  +   +++         G+  +   S   P+F   L   S +  + P+ T
Sbjct: 313 KQIRSGEAKFEDLARQYSEDPGSATKGGELGWAEPSIYVPEFAQTLNSLSPDQISEPFRT 372

Query: 264 QKGVEYIAICDKRDLGG-EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
             G     + ++R     +              K  +    ++ ++R++A I  +
Sbjct: 373 THGWHITQLEERRKTDATDQFNTNRAHQLIFRRKFNEELQNWLDEMRADAYIEVF 427


>gi|206603473|gb|EDZ39953.1| Putative peptidyl-prolyl cis-trans isomerase [Leptospirillum sp.
           Group II '5-way CG']
          Length = 340

 Score =  112 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 47/331 (14%), Positives = 109/331 (32%), Gaps = 19/331 (5%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI---- 60
           ++     F  +  +  +L+ F      +     +  ++   +N  +IT  ++ + +    
Sbjct: 1   MYFRNVLFPAIFLSATLLLSFLQAG-TARGERVLVDQVMAVVNHHMITKSELDRSLAPTF 59

Query: 61  ALLKLQKINGELEKIA-------VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
             L  +       ++        + + I E L+ +E E+ G+T   + +++      +  
Sbjct: 60  KKLHKRFRGKAYRELVASLEYKLLMKKINERLELEEAERQGLTVTDDELDHAIESIMQKN 119

Query: 114 GLSAE-DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK--QKM 170
             +++    + L +QG+    +KQ L  Q     +V  +          E+       + 
Sbjct: 120 NFTSKWQLKTALSEQGMSYRRYKQQLRKQMTILKLVNQEVRSTVVISPDEVRQYYLAHRD 179

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE-ESRLRLPKDCNKLEKFASKIHDV 229
           K        +R +   IP+   + Q    ++  +       R           +   +  
Sbjct: 180 KYRLPPHVTLRDIFLRIPEGATEAQIQEIRKHGEHILRQLKRGDDFVILAGSESEGPNAE 239

Query: 230 SIGKAQYLLESD-LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKA 286
           + G    L +   L    Q         T+    T  G   I I  + D        LK+
Sbjct: 240 NGGALGDLTKDQLLPELVQPAFTIPPGQTSGLIQTSNGFYIIKIIKREDNSFRSFKELKS 299

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            +    T    +K    +++KLR  + +  Y
Sbjct: 300 QILNDLTKKTTDKRLRIWLEKLREKSYVVIY 330


>gi|170725378|ref|YP_001759404.1| SurA domain-containing protein [Shewanella woodyi ATCC 51908]
 gi|169810725|gb|ACA85309.1| SurA domain [Shewanella woodyi ATCC 51908]
          Length = 434

 Score =  112 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 41/314 (13%), Positives = 102/314 (32%), Gaps = 15/314 (4%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK----- 67
           +K         +            A   R+   IN  ++ + +I+  I  +K        
Sbjct: 1   MKPCKHLIFAFLALAASHTVQAQTAPLDRVSVQINEGILLESEITGMIKTVKANATAAGQ 60

Query: 68  ---INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
               +  L    ++ LI+  L+ Q  ++ G+      ++      A+   L+ +     +
Sbjct: 61  ALPSDSALRTQVIERLIMTRLQMQMADRIGLHIGDLQLDQTIGNIAKEQNLTVDQMQLKI 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            ++G+  N +++ L  +    ++ +     +      EI +  + ++   ++E   +   
Sbjct: 121 AEEGMSWNQYREQLREEITLGEIQRIQVQRRIQVSPQEINSLVKMIEEKGLQEVEFQIGH 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESD 241
             I      N   +    K AE    R+    +        +S    +  G   Y+  ++
Sbjct: 181 ILIEVPSSPNSEQLASASKRAETVLKRVKDGADFRRTAIAASSGPKALEGGVWDYMNVNE 240

Query: 242 LHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKI 297
           +   F + L      +   P  +  G   I + D R       +     ++  + +P   
Sbjct: 241 MPTLFAEVLGNAKPGDVIGPIRSGAGFHIIKVLDARGLQTKEIDEVRSRHILIKPSPILS 300

Query: 298 EKHEAEYVKKLRSN 311
           E+     + K    
Sbjct: 301 EERAKAMLDKFVKE 314



 Score = 86.7 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 79/294 (26%), Gaps = 27/294 (9%)

Query: 49  EVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGI------------- 95
           E IT G+I +     ++Q    E+  +    +I E   ++   + G              
Sbjct: 136 EEITLGEIQRIQVQRRIQVSPQEINSLVK--MIEEKGLQEVEFQIGHILIEVPSSPNSEQ 193

Query: 96  ----TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
               +  + TV       A     +    S     +G   ++             +    
Sbjct: 194 LASASKRAETVLKRVKDGADFRRTAIAASSGPKALEGGVWDYMNVNEMPTLFAEVLGNAK 253

Query: 152 FMLKYGNLEM-----EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
                G +        I     +       + +    +   P   L  +       K  +
Sbjct: 254 PGDVIGPIRSGAGFHIIKVLDARGLQTKEIDEVRSRHILIKPSPILSEERAKAMLDKFVK 313

Query: 207 ESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQ 264
           E R           +++         G+  +   S   P F   L     N  + P+ + 
Sbjct: 314 EIRTGDADFAALARQYSEDPGSGAKGGELGWADPSVYVPAFAQTLNALELNEISEPFRSS 373

Query: 265 KGVEYIAICDKRDLGG-EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            G   + + ++R     +              K  +    ++ ++RS A I  +
Sbjct: 374 HGWHIVQLEERRKTDATDKFNTNRAHQLIFRRKFNEELQNWLDEMRSEAYIEVF 427


>gi|87198910|ref|YP_496167.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134591|gb|ABD25333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 456

 Score =  112 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 95/275 (34%), Gaps = 11/275 (4%)

Query: 44  TTINGEVITDGDISKRIALLKLQK-------INGELEKIAVQELIVETLKKQEIEKSGIT 96
             +NGE+IT  D+ +R+AL+               L    ++ LI ETL+ QE + + + 
Sbjct: 67  AIVNGEIITGTDVEQRLALIVSANGGKIDGEEKERLRMQVLRNLIDETLQIQEAKAADVP 126

Query: 97  FDSNTVNYFFVQHARNT-GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
            D   V+  + + A    G SA+    +L + G      K+ +  +  W ++++ +    
Sbjct: 127 ADDGQVDASYERVATQNFGQSADALEKYLARIGSSAASLKRQIRGEIAWQNLLRRNVQPF 186

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
               E E+    Q+++     E      +F     + + Q F         E   +    
Sbjct: 187 VNVSEGEVQEAMQRLQASKGTEEYRIGEIFLAATEENKPQVFANAE--KIVEQLKQGGSF 244

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAICD 274
                +++        G   ++  + L  +               P   + G   + + D
Sbjct: 245 VAYARQYSEASTAAVGGDLGWIRLAQLPTELATTAASMGPGQLAGPVEIRGGFSILYLID 304

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
           KR +       A LS +    +  K     +   R
Sbjct: 305 KRQVLTADPRDALLSLKQISIEFPKGATNEIATKR 339



 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 237 LLESDLHPQFQNLLKKSQ-NNTTNPYVT-QKGVEYIAICDKRDLGGEI-ALKAYLSAQNT 293
           +   DL    Q  L       TT P+ + ++GV  + +C + D           + AQ  
Sbjct: 373 IKARDLPGALQETLLNLPIGQTTPPFGSIEEGVRVLMLCGRDDPQVNSGPSFDEMMAQIE 432

Query: 294 PTKIEKHEAEYVKKLRSNAIIHY 316
             ++ K    Y++ LR +A+I Y
Sbjct: 433 DDRVNKRAQTYLRDLRRDAVIEY 455


>gi|193211689|ref|YP_001997642.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobaculum parvum
           NCIB 8327]
 gi|193085166|gb|ACF10442.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobaculum parvum
           NCIB 8327]
          Length = 439

 Score =  112 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 90/277 (32%), Gaps = 11/277 (3%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE-- 71
           K +  +F ++I  +  +    + +   +I   +  E+I    I+++  +  LQ    +  
Sbjct: 3   KTVFAFFAVLIVALAGLSDAIASSAPDKIVAIVGREIILKSQINEQELMYHLQYRESKND 62

Query: 72  --LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
             L +  ++ +I + +   +     I+ +   ++                 S+  ++  +
Sbjct: 63  PGLRQKILKNMIDQKILLTKARIDSISVNEQGIDEMANAKYNALRSQFPSVSAMEERFSL 122

Query: 130 GDNHFKQYLAIQSIWPDVV---KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
             N  KQ +        +V   +            E+ A   K +N   +   + +V   
Sbjct: 123 PVNRLKQDIRDDIRNQQMVDALRRKHFHDVTVSYDEVMAFYGKERNNLPKVPEMVSVSQL 182

Query: 187 IPDNKLQNQGFVQK--RIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLH 243
           I   ++ +    +   +I+   +             + +         G   ++ + +L 
Sbjct: 183 IRYPEIADSEKQRAMSKIQAISQQLQNGADFATLARETSDDPGSRELGGDLGFVHKGELV 242

Query: 244 PQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG 279
           P F+           +    ++ G   I + DK D  
Sbjct: 243 PSFEEAAYALKPGQISGVVESRFGYHLIQLIDKEDQS 279



 Score = 43.5 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 18/167 (10%), Positives = 50/167 (29%), Gaps = 17/167 (10%)

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
            +  ++ +   +   +R +L +   NK      V+       +            EK++ 
Sbjct: 267 YHLIQLIDKEDQSIHVRHILAAFDRNKTDLPKTVRMLEAIRADILAGKASFAEMAEKYSE 326

Query: 225 KI-HDVSIGKA-------QYLLESDLHPQFQNLLK--KSQNNTTNPYVT-----QKGVEY 269
                 + G+         +L+   L P  Q ++   K   + + P              
Sbjct: 327 DPASKGTGGQVISSATGEPFLVFDSLRPDLQKIVGGLKHAGDISQPVKIEPERGPFFYAL 386

Query: 270 IAICDKRDLGGEIALKA--YLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             + ++         +    L       K ++    +++KL+   ++
Sbjct: 387 FRLDERLPAHQLSPERDFTRLEEMAANQKRQEQFEAWIEKLKKEVVV 433


>gi|157374105|ref|YP_001472705.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sediminis
           HAW-EB3]
 gi|157316479|gb|ABV35577.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sediminis
           HAW-EB3]
          Length = 434

 Score =  112 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 36/310 (11%), Positives = 105/310 (33%), Gaps = 15/310 (4%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +K    +    +   +            R+   IN  ++ + +I+  +  +K    + E 
Sbjct: 1   MKPCKHFIFAFLTLAMSHTVLAKVEPLDRVAVQINEGIVLESEIAGMLQTVKANASSAEQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L    ++ LI+  L+ Q  ++ G+      ++      A+   L+ +   + +
Sbjct: 61  ALPSDQALRTQVIERLIMTRLQMQMADRIGLHIGDLQLDQTISNIAKEQNLTVDQMRAKI 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            ++G+  + +++ L  +    ++ +     +      EI    + ++   +++   +   
Sbjct: 121 GEEGMSWSQYREQLREEITLGEIQRIQVQRRIQVSPQEINNLVKLIEEQGLQQVEFQIGH 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESD 241
             I      +   +QK  + A     R+    +        ++    +  G   Y+  ++
Sbjct: 181 ILIEVPSSPSSEALQKASERANTVLKRIQDGDDFRRTAIAASAGPKALEGGVWDYMNVNE 240

Query: 242 LHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKI 297
           +   F + L      +   P  +  G   I + D R       +     ++  + +P   
Sbjct: 241 MPTLFAEVLSGAKTGDVIGPIRSGAGFHIIKVLDARGLQTKEVDEVSSRHILIKPSPILS 300

Query: 298 EKHEAEYVKK 307
           E+     + K
Sbjct: 301 EERAKAMLDK 310



 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 76/294 (25%), Gaps = 27/294 (9%)

Query: 49  EVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS--------- 99
           E IT G+I +     ++Q    E+  +    LI E   +Q   + G              
Sbjct: 136 EEITLGEIQRIQVQRRIQVSPQEINNLVK--LIEEQGLQQVEFQIGHILIEVPSSPSSEA 193

Query: 100 --------NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
                   NTV             +    +     +G   ++             +    
Sbjct: 194 LQKASERANTVLKRIQDGDDFRRTAIAASAGPKALEGGVWDYMNVNEMPTLFAEVLSGAK 253

Query: 152 FMLKYGNLEM-----EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
                G +        I     +       + +    +   P   L  +       K  E
Sbjct: 254 TGDVIGPIRSGAGFHIIKVLDARGLQTKEVDEVSSRHILIKPSPILSEERAKAMLDKFVE 313

Query: 207 ESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQ 264
           + R           +++         G+  +   S   P F   L        + P+ + 
Sbjct: 314 QVRAGDADFAALARQYSEDPGSGAKGGELGWADPSVYVPAFAQTLNALEIGEISEPFRSS 373

Query: 265 KGVEYIAICDKRDLGG-EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            G   + + ++R     +              K  +    ++ ++RS A I  +
Sbjct: 374 HGWHIVQLEERRKTDATDKFNTNRAHQLIFRRKFNEELQNWLDEMRSEAYIEVF 427


>gi|110598304|ref|ZP_01386579.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
           ferrooxidans DSM 13031]
 gi|110340112|gb|EAT58612.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
           ferrooxidans DSM 13031]
          Length = 438

 Score =  112 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 32/277 (11%), Positives = 81/277 (29%), Gaps = 12/277 (4%)

Query: 13  IKLLT-TYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
           +K ++    +L +  +  I +     ++ RI   +  EVI   +I  R  + +LQ     
Sbjct: 1   MKKISGKAVLLFLAGLASITTPSYAEVADRIVAVVGREVILKSEIDSRALMARLQSPELA 60

Query: 72  ----LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
               L +  +  LI + +   + +   +  D N ++       +              + 
Sbjct: 61  KDTGLSRRILDGLIEQQIILSKAKIDSVKVDENAISATAGDRFKQLRARFASKEEMETRF 120

Query: 128 GIGDNHFKQYLAIQSIWPDVVK---NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           G      +  +  +    ++++               E+       +           V 
Sbjct: 121 GKTLPAIRDEIRTEIRNQELIQTLRRKRSAGVKVTSGEVMDYYNANREKFSLIPEGVKVS 180

Query: 185 FSIPDNKLQNQGFVQK--RIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESD 241
             +    +     +Q   +I+   +             K++         G   Y+ +  
Sbjct: 181 QIMKYPAVSADAQLQALTKIQAVRKELQGGADFALLARKYSQDPGSARLGGDLGYVQKGA 240

Query: 242 LHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD 277
           L P F+       +   +    T+ G   I + +K  
Sbjct: 241 LIPSFETAAFSLKEGEVSGIIETRYGYHIIQLLNKEP 277



 Score = 44.7 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 53/167 (31%), Gaps = 17/167 (10%)

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
            +  ++ N       +R +L +   +K    G  Q       +             K++ 
Sbjct: 267 YHIIQLLNKEPNAIHVRHILVAFDHSKDDFSGVDQLLNSIRADILSGKSSFSEMASKYSD 326

Query: 225 KIHDVSIG----KAQ----YLLESDLHPQFQNLLK--KSQNNTTNP--YVTQKG---VEY 269
                 +G           Y+    L P+ + ++   K+  + + P      +G      
Sbjct: 327 DPSTAKLGGVISSIGGVGEYISLPSLRPELRAIITALKNPGDISPPSKIDPPQGESFYTI 386

Query: 270 IAICDKRDLGGEIALKAY--LSAQNTPTKIEKHEAEYVKKLRSNAII 314
           I + ++         K Y  L  +    K  +  +E+V++LR    +
Sbjct: 387 IKLNERVAAHTVNPEKDYSFLEEEALDNKNRRLFSEWVQQLRKEVYV 433


>gi|39933588|ref|NP_945864.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris CGA009]
 gi|39647434|emb|CAE25955.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris CGA009]
          Length = 311

 Score =  112 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 81/280 (28%), Gaps = 47/280 (16%)

Query: 40  SRIRTTINGEVITDGDIS---KRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGIT 96
           + +   +NG  I   D+    + +     Q      ++  +  LI   +  +  E   I 
Sbjct: 41  NPVLAKVNGAEIRQSDVDLAEQELGPSLAQLDPASRKENVLAFLIDMKIVAKAAEDKKIQ 100

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
            +++                                    +   + +  DV+  +     
Sbjct: 101 DNADFKKRL------------------------------DFARNRLLMDDVLAAEGKAAT 130

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
            +  M+   ++   +    +E   R +L    D        ++K                
Sbjct: 131 TDEAMKKVYDEAAKQISGEQEVHARHILVETEDEAKAVAEELKK-----------GADFA 179

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDK 275
              +K +        G   +  +  + P+F            ++P  TQ G   I + +K
Sbjct: 180 ELAKKKSKDPGASDGGDLGFFTKDQMVPEFSAAAFALEPGKISDPIKTQFGWHIIKVEEK 239

Query: 276 RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           R+          + AQ       K +++YV KLR  A I 
Sbjct: 240 RNRKP--PSFDQVKAQIEQYVTRKAQSDYVSKLRQAAKIE 277


>gi|126173223|ref|YP_001049372.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS155]
 gi|125996428|gb|ABN60503.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS155]
          Length = 434

 Score =  112 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 38/317 (11%), Positives = 104/317 (32%), Gaps = 19/317 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +K        +    +   +  +     R+   IN  ++ + +I+  I  +K        
Sbjct: 1   MKPSKHLIFALFALAISQPTLAAPQPLDRVAVQINDGIVLESEITNMIDTVKANAKTANQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L    ++ LI+  L+ Q  ++ G+      ++      AR   +S       +
Sbjct: 61  SLPSDSALRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQKISVAQMQQKI 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           + +G+  + +++ L  +    ++ +     +      EI +  + ++   +++   +   
Sbjct: 121 ESEGLSFSQYREQLREEITLGEIQRIQVQRRIQVSPQEITSLVKLIQEQGMKDVEYQIGH 180

Query: 185 FSIPDNKLQNQGFVQ---KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             I          ++   KR     E               +S    +  G   Y+  ++
Sbjct: 181 ILIDVPNNPTSEQLESSSKRANIVLERLKSGEDFRRTAIASSSGPKALEGGIWDYMNINE 240

Query: 242 LHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQ----NT 293
           +   F + +      +   P  +  G   I I D R       E     ++  +     +
Sbjct: 241 MPTLFAEVINGAKTGDIIGPIKSGAGFHIIKIMDARGLQTKEIEEVRARHILLKPSPILS 300

Query: 294 PTKIEKHEAEYVKKLRS 310
             + +    +++K++RS
Sbjct: 301 EDRAKAMLEQFLKQIRS 317



 Score = 83.6 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 84/295 (28%), Gaps = 29/295 (9%)

Query: 49  EVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGI---TFDSNTVNYF 105
           E IT G+I +     ++Q    E+  +    LI E   K    + G       +N  +  
Sbjct: 136 EEITLGEIQRIQVQRRIQVSPQEITSLVK--LIQEQGMKDVEYQIGHILIDVPNNPTSEQ 193

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGD-------------NHFKQYLAIQSIWPDVVKNDF 152
               ++   +  E   S  D +                   +     + +++ +V+    
Sbjct: 194 LESSSKRANIVLERLKSGEDFRRTAIASSSGPKALEGGIWDYMNINEMPTLFAEVINGAK 253

Query: 153 MLKYGNLEMEIPANKQKMKN-------ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
                                        + E   R +L        +++          
Sbjct: 254 TGDIIGPIKSGAGFHIIKIMDARGLQTKEIEEVRARHILLKPSPILSEDRAKAMLEQFL- 312

Query: 206 EESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVT 263
           ++ R    K  +   +++         G+  +   S   P+F   L     +  + P+ T
Sbjct: 313 KQIRSGEAKFEDLARQYSEDPGSATKGGELGWAEPSIYVPEFAQTLNSLKTDQISEPFRT 372

Query: 264 QKGVEYIAICDKRDLGG-EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
             G     + ++R     +              K  +    ++ ++RS+A I  +
Sbjct: 373 THGWHITQLEERRKTDATDQFNSNRAHQLIFRRKFNEELQNWLDEMRSDAYIEIF 427


>gi|193214030|ref|YP_001995229.1| SurA domain [Chloroherpeton thalassium ATCC 35110]
 gi|193087507|gb|ACF12782.1| SurA domain [Chloroherpeton thalassium ATCC 35110]
          Length = 439

 Score =  112 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 41/316 (12%), Positives = 95/316 (30%), Gaps = 19/316 (6%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMS----SRIRTTINGEVITDGDISKRIALLKLQK 67
            I  L      ++F +    S+   A +      I   +  E I   D+  +  L   Q 
Sbjct: 1   MINKLGKIGFALLFMLALAGSFSKPASAQEMLDGIVAVVGDEAILKSDVDNQAMLYAYQN 60

Query: 68  I----NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
                   L K     LI + +   + +   IT  S  V+    Q             + 
Sbjct: 61  QINLNTPGLWKEVFTALINQKILLMKAKLDSITVSSEEVDGLVEQRIAFLRERLRTDEAI 120

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFML-----KYGNLEMEIPANKQKMKNITVREY 178
           ++  G   +  +  L  +     +V+             N E+    N  +     +   
Sbjct: 121 VETFGKSIDMLRVDLREEIKSQRLVEELQRQHFSDLTVSNEEVVDFYNTYRDSLPEIPAE 180

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYL 237
           +    +   P     ++      I++ ++               +         G   ++
Sbjct: 181 VEVAHIVIKPKTDSLSKQSALDAIQEVQKELQDGKDFAELARAESQDPGSARLGGDLGFV 240

Query: 238 LESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK 296
              +   +F+ +     +N  +    T+ G   I + +++   GE     ++  +   TK
Sbjct: 241 KRGEFVRRFEEVAFGLKENQISGIVETEFGYHIIQLLERK---GEAIRVRHILKRFDKTK 297

Query: 297 IEKHEA-EYVKKLRSN 311
           +    A + + ++R N
Sbjct: 298 LNDAAAIDQLNEIREN 313



 Score = 41.6 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/169 (10%), Positives = 42/169 (24%), Gaps = 15/169 (8%)

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
           E E   +  ++         +R +L      KL +   + +  +  E       +     
Sbjct: 266 ETEFGYHIIQLLERKGEAIRVRHILKRFDKTKLNDAAAIDQLNEIRENVLSGKAEFSMMA 325

Query: 220 EKFASKIHDVS-IGKAQYLLESD--------LHPQFQNLLKKSQNNTTNPYVTQKG---- 266
            +F+         G       +         L      +        + P   Q G    
Sbjct: 326 RQFSEDESSAELGGDIVSPQTNQKRIPLDGLLPAIRSIIETLRPGEISKPTRIQLGDEYA 385

Query: 267 VEYIAIC--DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
              + +     +         A L       +  +  + +V++L+    
Sbjct: 386 FSIVKLKYFAPKHRLNLEQDYARLRNMALQRQQAERYSSWVEELKKTIY 434


>gi|121602042|ref|YP_988820.1| SurA domain-containing protein [Bartonella bacilliformis KC583]
 gi|120614219|gb|ABM44820.1| SurA domain protein [Bartonella bacilliformis KC583]
          Length = 325

 Score =  112 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 74/312 (23%), Positives = 130/312 (41%), Gaps = 6/312 (1%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKS-WAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           + F+ L  T F+ +    + ++S    +A  +++  T+NG  IT+ DI +RIA LKLQ+ 
Sbjct: 12  NHFLTLFFTAFLGVSSLFINVLSISPVFAQQTKVALTVNGNAITNYDIQRRIAFLKLQQK 71

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
              L   A  ELI E LKK EI++  I    + V+  F   A    ++    S  L +  
Sbjct: 72  KENLSVQAKNELIDEMLKKIEIKQRNIDVSDSEVDAAFENFAVQNHMTINQLSEMLTQTN 131

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
           +   HFK Y+  Q  W  +V   +  + G L  +  A+K              T+   I 
Sbjct: 132 VTVKHFKDYIRGQIGWGRLVNARYQAEGGLLTEQEVAHKILKNGGQKPSTDEYTLQRIIF 191

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
                 +  + ++      S       CN        I DV+I  +  +LE  L   ++ 
Sbjct: 192 VIPAHRRSEILQKRTQEANSFREHFNGCNNTRAQVKGILDVTIRSSVKILEPQLPQDWKK 251

Query: 249 LLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP----TKIEKHEAE 303
            + ++     T    T  G+E  A+C  + +  +   +   S Q++      ++E    +
Sbjct: 252 FILETPAGKMTQVQETPNGIEAFAVCQIKRVSDDRVAQLLFSIQHSQEDIPQELETLSEK 311

Query: 304 YVKKLRSNAIIH 315
           Y+K+L+  A I 
Sbjct: 312 YLKELQQAAHIK 323


>gi|56460109|ref|YP_155390.1| periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina
           loihiensis L2TR]
 gi|56179119|gb|AAV81841.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina
           loihiensis L2TR]
          Length = 622

 Score =  112 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 41/407 (10%), Positives = 101/407 (24%), Gaps = 97/407 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++      +        +++ F +  +  Y +          +NGE I   D  +  
Sbjct: 1   MLERIREGSQSYTAKAILVLIILTFALAGVGGYITSDTEDA-VAKVNGEEIPRSDYDRAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L    +++LI + L  Q  E +G+      V  
Sbjct: 60  ENERSRLQEQFGDMFSAITSDPDYMRNLRSGVLEQLIEQELLVQYAEDNGMRVSPEQVKA 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                ++         + +   L   G     F + +        +++            
Sbjct: 120 AIRDISQFRTAGQFDNDVYLMALRNAGYSPEAFAKVMQQDMTRNQLLRGLSATAFVLEPE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNIT-------------- 174
                                  F  +    E +I    Q+ +++               
Sbjct: 180 AIAFMRLQSQSRSGGFLVASNESFEEQVEIAEQDIENFYQQNQDMFRTQEKLSVAYVELS 239

Query: 175 ----------------------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
                                  ++Y                    +K+ ++A     + 
Sbjct: 240 LAAVESEVEISDEEVRQYYDERQQQYSTEEERRVSHILIEFETDNAKKKAEEALAELKQG 299

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEY 269
                  + ++         G   ++    +   F   +   ++  + ++   T  G   
Sbjct: 300 ADFSEVAQTYSDDTFSAEQGGDLGWIEAGMMDEDFDASVFELENVGDLSDVVETSFGYHI 359

Query: 270 IAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           I + D R+  +     +K  +  Q    K E     Y +K +  A I
Sbjct: 360 IKLTDLREGSVTPFNEVKDEVRQQLLTEKAED---RYFEKQQKLAEI 403



 Score = 47.0 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/249 (11%), Positives = 72/249 (28%), Gaps = 8/249 (3%)

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
            E++    Q+L+ E  + +  EK     + +      ++ A     S    S    +   
Sbjct: 374 NEVKDEVRQQLLTEKAEDRYFEKQQKLAEISFEQPDTLEPAAEEIGSTVRRSDLFTRDRA 433

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                   +        ++K            +     + +         +R        
Sbjct: 434 PTPLSDDVVLNNLFSEQLIKEKLNSDIIETSDD-----RSLVVRVTEHQPVRVKELDEVR 488

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI--GKAQYLLESDLHPQFQ 247
            K+ ++  V+K  + A E      +     E+ + +I  V            + +   F 
Sbjct: 489 EKIVSELRVEKAQQLALEQANEWMQAWKAGEEVSDEIVWVDSIQRNNGEHPRTIVRELFS 548

Query: 248 NLLKKSQNNTTNPYVTQKG-VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
                S  +  N      G    +A+ +      + +    L +Q    + +     ++ 
Sbjct: 549 MSPSASDESVFNTVALPNGDAAVVALTEVSPGSTDDSQLDELKSQMRNRQAQVMLQAFIN 608

Query: 307 KLRSNAIIH 315
            L+++A I 
Sbjct: 609 NLKADADIK 617


>gi|84500721|ref|ZP_00998970.1| PPIC-type PPIASE domain protein [Oceanicola batsensis HTCC2597]
 gi|84391674|gb|EAQ04006.1| PPIC-type PPIASE domain protein [Oceanicola batsensis HTCC2597]
          Length = 282

 Score =  112 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 30/305 (9%), Positives = 81/305 (26%), Gaps = 50/305 (16%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD---ISKRIALLKLQKING 70
           +L+    V     +   V  +    +  +  T++G  IT G    + + +     Q  + 
Sbjct: 4   RLIQAAAVSFTLAMAAPVQAQDETTADTVVATVDGTEITLGHMILLRQSLPQQYGQLPDE 63

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
            L +  + +L+ +T                                     S+       
Sbjct: 64  VLFQGILDQLVQQTAL---------------------------------SKSYEGDTPRS 90

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                +      I    V++       +  ++   +          EY    +L      
Sbjct: 91  IRLALENEERGLIAAKAVRDVLSDGVTDEAIQQAYDDTYGNAEPETEYKAAHIL------ 144

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL 250
                   ++  +   E            ++ ++     + G+  +  +  +   F+  +
Sbjct: 145 -----VETEEEARAIVEELNGGGDFAELAQEKSTGPSAPNGGELGWFGKGMMVAPFEEAV 199

Query: 251 K-KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
                   + P  TQ G   I + + R    +      +  +      ++    ++  L 
Sbjct: 200 VGMEPGAVSEPVQTQFGWHVIQLQETR--TKDAPALEDVRDELRGQVEQQLVKAHIDALV 257

Query: 310 SNAII 314
            NA +
Sbjct: 258 ENANV 262


>gi|224369907|ref|YP_002604071.1| PpiD2 [Desulfobacterium autotrophicum HRM2]
 gi|223692624|gb|ACN15907.1| PpiD2 [Desulfobacterium autotrophicum HRM2]
          Length = 314

 Score =  112 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 39/317 (12%), Positives = 104/317 (32%), Gaps = 24/317 (7%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--- 70
           + +     + +F +  +       +  RI   +N ++IT  +++  +     +  +    
Sbjct: 4   RKINFGLAIGVFTLFTLCGNVYAEIVDRIVAIVNEDIITLTELNTALRPYIDKIDSAGYT 63

Query: 71  ---------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
                    +L    +  ++   L  QE++K  IT     ++    +  +   ++ ED  
Sbjct: 64  GDKKEKILFKLRTDMLSRMVDRKLTDQEVKKFNITVTDKEIDAAIERLKQAQLMTQEDLE 123

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
           + L+K G+    +++ + ++ + P ++      K    + +I A   + +         R
Sbjct: 124 TALEKDGMTFADYREKMRLEIMRPKLINYSVKSKVIVTDKDIAAYYAEHQAEYAGVRKFR 183

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
                + D                               + +   +    G         
Sbjct: 184 LSNILVSDESTAETV---------WNRLETGEDFKALAGELSKAPNAAEGGALGSFALDT 234

Query: 242 LHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIE 298
           L  Q +  + K      TN   T +G +   + +  +  G     +K  +  +   + +E
Sbjct: 235 LSDQLKVAIGKLEPGQYTNVIPTDQGFQIFFLDEIVESKGNALDEVKDEIQKKLYDSIVE 294

Query: 299 KHEAEYVKKLRSNAIIH 315
           K    +++ LR  ++I 
Sbjct: 295 KKFNSWLESLREKSLIK 311


>gi|158425946|ref|YP_001527238.1| hypothetical protein AZC_4322 [Azorhizobium caulinodans ORS 571]
 gi|158332835|dbj|BAF90320.1| hypothetical protein [Azorhizobium caulinodans ORS 571]
          Length = 302

 Score =  112 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 55/305 (18%), Positives = 124/305 (40%), Gaps = 8/305 (2%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           + + +   ++ C + +         +++   ++G+ IT  D+++R+ L +L +     +K
Sbjct: 1   MTSAFRRFLLVCALALPVLAPGVALAQVLVMVSGQPITSNDVAQRMKLHQLIENKSPPQK 60

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             ++ELI E +K  +  +  I  D + VN  F   A  +G +A+  ++   + G+    F
Sbjct: 61  QVLEELIDEKIKVLQAARFSIEADEDDVNRMFSNIAERSGRTADQLTASFAQSGLKVQTF 120

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIP--ANKQKMKNITVREYLIRTVLFSIPDNKL 192
           K  L    +W   V+    +        I     +      T  EY++R ++  +     
Sbjct: 121 KDKLRADYVWGQYVRARAPVVNIRDSDVIAALNKQGNADAFTATEYVLRPIILVVGGGSN 180

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LK 251
                + +      +        C+   +    + +  +      L S++  + + +  K
Sbjct: 181 AYGSRLAEANALRAKF-----NGCDAGLQMIKGMKETVVRSPINRLSSEIPEKMRAVLDK 235

Query: 252 KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
                 T P V+Q GVE  A+C+KR + GE + K  +  + +  + ++     + +LR  
Sbjct: 236 TEVGRLTPPEVSQSGVETFAVCEKRTVKGESSKKRDIKDELSNAQFQEQSKRMMAELRKT 295

Query: 312 AIIHY 316
            +I Y
Sbjct: 296 MLIQY 300


>gi|91794237|ref|YP_563888.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           denitrificans OS217]
 gi|121956465|sp|Q12K61|SURA_SHEDO RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|91716239|gb|ABE56165.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           denitrificans OS217]
          Length = 434

 Score =  112 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 38/308 (12%), Positives = 99/308 (32%), Gaps = 15/308 (4%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +K        ++   +      +     R+   IN  +I + +I   +A ++        
Sbjct: 1   MKHSKKIVTALLALAMSQTVMAAPVALDRVSVQINDGIILESEIGNMLATVRANANKSNQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L    ++ LI+  L+ Q  E+ G+      ++      A++  L+       L
Sbjct: 61  TLPSEQALRTQVIERLILTRLQLQMAERIGLQIGDLQLDQTIESIAKDQKLTVSQLQQQL 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           +  G+  + +++ L  +    ++ +     +      EI    + M+   ++E   +   
Sbjct: 121 ENDGLSFSQYREQLREEITLGEIQRIQVQRRIQVSPQEISGLVKLMQEQGLKEVEFQIGH 180

Query: 185 FSIPDNKLQNQGFVQ---KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             I      +   ++   KR     +         +     +S    +  G   Y+  ++
Sbjct: 181 ILIDVPSEPSSEQLEASSKRANIVLKRLNEGEDFRSTAIASSSGPKALEGGIWDYMNINE 240

Query: 242 LHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKI 297
           +   F + +      +   P  +  G   I + D R       E     ++  + +P   
Sbjct: 241 MPTLFAEVVNGAKVGDIIGPIKSGSGFHIIKVMDARGLQTKEVEEVKSRHILLKPSPILS 300

Query: 298 EKHEAEYV 305
           E+     +
Sbjct: 301 EERAKAML 308



 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/292 (12%), Positives = 76/292 (26%), Gaps = 23/292 (7%)

Query: 49  EVITDGDIS------------KRIALLKLQKINGELEK---IAVQELIVETLKKQEIEKS 93
           E IT G+I             + I+ L        L++        LI    +    +  
Sbjct: 136 EEITLGEIQRIQVQRRIQVSPQEISGLVKLMQEQGLKEVEFQIGHILIDVPSEPSSEQLE 195

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
             +  +N V     +       +    S     +G   ++             V      
Sbjct: 196 ASSKRANIVLKRLNEGEDFRSTAIASSSGPKALEGGIWDYMNINEMPTLFAEVVNGAKVG 255

Query: 154 LKYGNLEM-----EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
              G ++       I     +       E +    +   P   L  +      +   ++ 
Sbjct: 256 DIIGPIKSGSGFHIIKVMDARGLQTKEVEEVKSRHILLKPSPILSEERAKAMLVNFQKQI 315

Query: 209 RLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKG 266
                       +++         G+  +       P+F   L    +N  + P+ T  G
Sbjct: 316 LSGEADFAELARQYSEDPGSAAKGGELGWSSPDVYVPEFAQTLNSLKENEMSEPFRTTHG 375

Query: 267 VEYIAICDKRDLGGEIA-LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
                + DKR                    K  +    ++ ++RS+A I  +
Sbjct: 376 WHLTQLMDKRKTDATEQFNSNRAHQLIFRRKFNEELQAWLDEMRSDAYIEVF 427


>gi|332534336|ref|ZP_08410179.1| survival protein SurA precursor [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036246|gb|EGI72719.1| survival protein SurA precursor [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 431

 Score =  112 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 105/317 (33%), Gaps = 19/317 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-- 70
           + L       ++   +      +     ++   +N  VI   ++   I  +K Q      
Sbjct: 1   MNLKKLLTSAVLSASLCQSVMAAPVEIDKVIGVVNQGVILKSEVDTIIDRVKKQAQEQGQ 60

Query: 71  ------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L   AV+ L+ + L  Q  E+ G+    + ++      A+  G +  D    +
Sbjct: 61  QLPKDETLRVQAVERLVNQALMMQMAERMGLQISDSQLDQTLANMAKEQGGTIADLRRTI 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA--NKQKMKNITVREYLIRT 182
           +  G     +++ +  +     V +     +    E E+       + +  +  EY I  
Sbjct: 121 EGSGESFQAYREEIRKEITTQQVTRASVDRRIYISEQEVDNLLKIMETQGQSAEEYDIGH 180

Query: 183 VLFSIPDNKLQNQGFVQK-RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
           +L  IP++   ++    K R     E      +        +S    +  G+  Y+  ++
Sbjct: 181 ILIDIPNDATADEIADAKTRADKVIELLNDGQEFKRIAISSSSGSKALEGGQLGYMGINE 240

Query: 242 LHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRD---LGGEIALKAYLSAQ----NT 293
           +   F + +  + +     P  +  G   I + D R    +        ++  +     +
Sbjct: 241 MPSLFAEAVKGQKKGAIVGPLRSGAGFHIIKVQDVRGLQVVETTEVRSRHILIKPSIILS 300

Query: 294 PTKIEKHEAEYVKKLRS 310
             K     A + K LR+
Sbjct: 301 EEKARSMLAGFAKDLRA 317



 Score = 77.4 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/283 (12%), Positives = 86/283 (30%), Gaps = 10/283 (3%)

Query: 44  TTINGEV-ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
            +++  + I++ ++   + +++ Q  + E E      LI         E +     ++ V
Sbjct: 146 ASVDRRIYISEQEVDNLLKIMETQGQSAE-EYDIGHILIDIPNDATADEIADAKTRADKV 204

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM- 161
                       ++    S     +G    +             V         G L   
Sbjct: 205 IELLNDGQEFKRIAISSSSGSKALEGGQLGYMGINEMPSLFAEAVKGQKKGAIVGPLRSG 264

Query: 162 ----EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
                I     +   +     +    +   P   L  +         A++ R        
Sbjct: 265 AGFHIIKVQDVRGLQVVETTEVRSRHILIKPSIILSEEKARSMLAGFAKDLRAGTADFGE 324

Query: 218 KLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK 275
             ++++      +  G+  +   +   P F++ L    +N  + P+ TQ G   + +  K
Sbjct: 325 LAKEYSEDPGSALKGGEYDWTDPTTYVPAFKDTLLSLKENEISEPFRTQFGWHIVQLLGK 384

Query: 276 RDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           R     E+A +          K ++    + +++R  A +  +
Sbjct: 385 RVADKTELAKRNRAHGMLFNRKFKEESFNWQQEMREQAHVEIF 427


>gi|222056790|ref|YP_002539152.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
           FRC-32]
 gi|221566079|gb|ACM22051.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
           FRC-32]
          Length = 308

 Score =  112 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 43/311 (13%), Positives = 88/311 (28%), Gaps = 49/311 (15%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSR---IRTTINGEVITDGDISKRIA----LLKLQ 66
           KL      +         +        +   +   +NG  IT  D +K +      LK  
Sbjct: 8   KLFFVALCITAVFGCKGQTGTGAKEEKKSGPVLAEVNGSTITGSDFNKEVEALPPYLKPM 67

Query: 67  KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
               E +K  +  ++V  L  Q+ +K GI       +                       
Sbjct: 68  AETVEGKKELLDTMVVRELILQQAKKDGIDKSQAVADKL--------------------- 106

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
                    + L  + I    +K     +    + E+     K K        +R     
Sbjct: 107 ---------EELKNRIIVEAFLKKKVEEQAKIGDAELQDFYNKNKEKFRTGEQVRASHIL 157

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
           +               ++  +            +K +        G   +  +  + P+F
Sbjct: 158 VKTEPEA---------QEILKQLKAGGNFEELAKKQSIDAAAAKGGDLGWFGKGSMLPEF 208

Query: 247 QNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAE 303
           +N +    +  T+    T+ G   I +  KR  G      +K  + A   P K ++   +
Sbjct: 209 ENAVFGLKEGATSGIVQTKYGYHIIKLTGKRPAGVRPLDEVKEQIKAAILPEKQQEVFKK 268

Query: 304 YVKKLRSNAII 314
             + L+  A +
Sbjct: 269 LKEDLKKGAKV 279


>gi|167629347|ref|YP_001679846.1| ppic-type ppiase domain protein, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167592087|gb|ABZ83835.1| ppic-type ppiase domain protein, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 338

 Score =  112 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 90/296 (30%), Gaps = 26/296 (8%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKING----------ELEKIAVQELIVET 84
             +    +  ++NGE I+  D+ KRI   K +               LE+  ++ +I E 
Sbjct: 22  GCSSGGNVVASVNGETISRSDLDKRINRYKEELSRSGGADSKELMANLERQELEHMIDEM 81

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
           L  QE +K  I      V     +  +     AE     L +  + ++     +  + I+
Sbjct: 82  LFTQEAKKRNIEVSDGQVAAELAKEKQQFPSDAEFQE-ALKRYRLTEDELSGIIRTRLIF 140

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
             +            + ++    +   +   +   ++     +   +       +     
Sbjct: 141 NGLYDA-VTSDIQISDADVEKYYRDNPDKFKQNRQVKASHILLKTEEEAKAIIAE----- 194

Query: 205 AEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYLLESDLHPQFQNLLKKSQNNTT--NPY 261
                 R         + ++      + G   Y    D+  +F +     +   T   P 
Sbjct: 195 ----LERGADFAQLAVQKSTDSTAAQNKGDLGYFQAEDMVKEFSDAAFSMKKGETSRTPV 250

Query: 262 VTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            +  G   I + D ++        +K  +       + ++    +   +++ A I 
Sbjct: 251 KSNFGYHVIRVEDIKEARQQRFDEVKDQIRVDLGADRKQERFESWFADVKAQAKIE 306


>gi|113969251|ref|YP_733044.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-4]
 gi|121956472|sp|Q0HLT0|SURA_SHESM RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|113883935|gb|ABI37987.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-4]
          Length = 434

 Score =  112 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 38/317 (11%), Positives = 104/317 (32%), Gaps = 19/317 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +K        +    +   +  +     R+   IN  ++ + +I+  I  +K        
Sbjct: 1   MKPSKHLIFALFALAISQPTMAAPQPIDRVAVQINDGIVLESEITNMIDTVKANARAANQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L    ++ LI+  L+ Q  ++ G+      ++      AR   ++       +
Sbjct: 61  SLPSDSALRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQKMTVAQMQQKI 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           + +G+    +++ L  +    ++ +     +      EI    + ++   +++   +   
Sbjct: 121 ESEGLSFGQYREQLREEITLGEIQRIQVQRRIQVSPQEITGLVKLIQEQGMKDVEYQIGH 180

Query: 185 FSIPDNKLQNQGFVQ---KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             I      N   ++   KR     E               +S    +  G   Y+  ++
Sbjct: 181 ILIDVPNNPNSEQLEASSKRANAVLERLKSGEDFRRTAIASSSGPKALEGGIWDYMNINE 240

Query: 242 LHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQ----NT 293
           +   F + +    + +   P  +  G   I I D R       E     ++  +     +
Sbjct: 241 MPTLFAEVINGAKKGDIIGPIKSGAGFHIIKIMDARGLQTKEIEEVRARHILLKPSPILS 300

Query: 294 PTKIEKHEAEYVKKLRS 310
             + +    +++K++RS
Sbjct: 301 EDRAKAMLEQFLKQIRS 317



 Score = 80.9 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/295 (12%), Positives = 85/295 (28%), Gaps = 29/295 (9%)

Query: 49  EVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGI---TFDSNTVNYF 105
           E IT G+I +     ++Q    E+  +    LI E   K    + G       +N  +  
Sbjct: 136 EEITLGEIQRIQVQRRIQVSPQEITGLVK--LIQEQGMKDVEYQIGHILIDVPNNPNSEQ 193

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGD-------------NHFKQYLAIQSIWPDVVKNDF 152
               ++      E   S  D +                   +     + +++ +V+    
Sbjct: 194 LEASSKRANAVLERLKSGEDFRRTAIASSSGPKALEGGIWDYMNINEMPTLFAEVINGAK 253

Query: 153 MLKYGNLEMEIPANKQKMKN-------ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
                                        + E   R +L        +++          
Sbjct: 254 KGDIIGPIKSGAGFHIIKIMDARGLQTKEIEEVRARHILLKPSPILSEDRAKAMLEQFL- 312

Query: 206 EESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVT 263
           ++ R    K  +   +++         G+  +   S   P+F   L   SQ+  + P+ T
Sbjct: 313 KQIRSGEAKFEDLARQYSEDPGSAAKGGELGWAEPSIYVPEFAQTLNSLSQDQISEPFRT 372

Query: 264 QKGVEYIAICDKRDLGG-EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
             G     + ++R     +              K  +    ++ ++R++A I  +
Sbjct: 373 THGWHITQLEERRKTDATDQFNTNRAHQLIFRRKFNEELQNWLDEMRADAYIEVF 427


>gi|239818232|ref|YP_002947142.1| SurA domain protein [Variovorax paradoxus S110]
 gi|239804809|gb|ACS21876.1| SurA domain protein [Variovorax paradoxus S110]
          Length = 469

 Score =  112 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 95/302 (31%), Gaps = 18/302 (5%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK------INGELEKIAVQELI 81
            P  +      +  I   +N E IT+ ++  R+  L  +          EL ++ ++ LI
Sbjct: 51  APSTAAPVQRAAEYIVALVNSEPITNTEVQSRVTRLIRENAEAERVPRAELTRLVLERLI 110

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
            E  + Q  +++GI  D   ++      AR   +S E+    +  +GI    F+  L  Q
Sbjct: 111 SERAQLQLAKENGIKVDEVAIDQAEQTVARQNQISVEELRRRVVAEGISQREFRNDLRDQ 170

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV------LFSIPDNKLQNQ 195
            +   +   +   K    + E     +  +N   ++  ++ +      +    +      
Sbjct: 171 LLLTRLRDREVESKVKISDAEADEYLRDQRNAPTKDAALQNINLAHLLVAVPENATEAQV 230

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQ 254
             +Q+R +   +           +++ +      + G             F +       
Sbjct: 231 ATLQQRAQGLAQRARAGEDFAKLVQENSDSPDRANGGAVGMRTADRYPSLFVEATQSTPV 290

Query: 255 NNTTNPYVTQKGVEYIAICDK-----RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
           N    P  +  G   + +  K      D         ++   N P +        + + +
Sbjct: 291 NGIAGPIRSGAGFHVLKVLAKAQLGATDATVTQTQVRHILLLNDPKRTTAQAVAQLAEFK 350

Query: 310 SN 311
             
Sbjct: 351 RR 352



 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 2/123 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             V +  +     + R           +        G   +       P+F+  + + + 
Sbjct: 341 QAVAQLAEFKRRLQARTADFAGLARDNSQDASAKEGGDLGWSRPGQFVPEFEEAMDRLAP 400

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKHEAEYVKKLRSNAI 313
              ++P V++ GV  I +  +R+     A +     A     ++E+  + +V++ R+ A 
Sbjct: 401 GQISDPVVSRFGVHLIQVVGRRESKLTQAEQREAARAVLREQRVEEAFSTWVQETRARAY 460

Query: 314 IHY 316
           + Y
Sbjct: 461 VEY 463


>gi|332295328|ref|YP_004437251.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermodesulfobium
           narugense DSM 14796]
 gi|332178431|gb|AEE14120.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermodesulfobium
           narugense DSM 14796]
          Length = 409

 Score =  112 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/322 (13%), Positives = 101/322 (31%), Gaps = 31/322 (9%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI--------AL 62
            F+K +  +  ++I  +    +Y  +        T+NGE I   +  K +          
Sbjct: 36  GFLKNIKFWLGVLIVVLAVSGAYTLFEFQP--VATVNGEPIRRYEYEKTLGDAVSYYEQY 93

Query: 63  LKLQKINGE------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
                   E      L+K  +  +I   +  QE +K  I    + V+    +  ++    
Sbjct: 94  GINLYDPKEASFFLELKKQVLNHMIDNKIITQEAKKENIKITPSEVDARIDEIKKSFPSE 153

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            + + +   ++        + +  Q +  + +           E E+ A  ++ K   V+
Sbjct: 154 KDFYEALAKQKISMGE--LRNIIEQQLTAEALFKKLTSNVTISEAEVKAYYEEHKKEFVQ 211

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQ 235
              I      +   +  N            E   +        ++++         G   
Sbjct: 212 PEQIHLRHILVKTEQEANNI---------YEQLKQGKDFATLAKEYSIDTPTKDKGGDLG 262

Query: 236 YLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQN 292
           ++ ++ L P   +   +   N  + P  +  G   I     R         +K  L+AQ 
Sbjct: 263 WISKASLVPDLAKAADELKDNEFSKPIKSPFGYHIIEKLGTRPSKELSFDEVKNTLTAQL 322

Query: 293 TPTKIEKHEAEYVKKLRSNAII 314
              K  +   ++ K+ +  + I
Sbjct: 323 LRNKQAQSLEKWFKEKKEQSKI 344


>gi|217978373|ref|YP_002362520.1| hypothetical protein Msil_2224 [Methylocella silvestris BL2]
 gi|217503749|gb|ACK51158.1| conserved hypothetical protein [Methylocella silvestris BL2]
          Length = 315

 Score =  112 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/280 (20%), Positives = 112/280 (40%), Gaps = 4/280 (1%)

Query: 36  WAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGI 95
              +  I  +ING+ IT+ DI +R+ LL++ +      + A++ L  + L+  E EK G+
Sbjct: 34  PVHAQAIVASINGDPITNIDIDQRMKLLRVLRKPAT-REAAIESLFRDRLQIHEAEKYGV 92

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
                 ++   V+ A    L  +   S L   G+ ++ FK Y      +  +V+      
Sbjct: 93  NPRDADISQQIVKTATEMNLQPQALLSALQAAGVSEDQFKSYFRANLAFTVLVQA-LNKG 151

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
               E ++ A  +K                            +  R K+AE+ R R    
Sbjct: 152 VEASETQVRAELEKQGGKAAAGTSYTVQQIIFTLPIGTTPAILAARSKEAEQLRSRFTDC 211

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICD 274
                + A  ++DV++         +L  Q +  L K +    T P  +  G+E +A+C 
Sbjct: 212 -KSGAEMARTLNDVTVRDQLTRSSHELGEQLRQLLDKTAIGRLTPPQRSTSGLEMVAVCA 270

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           +     + A++  ++ +     I++     +K+LR  A+I
Sbjct: 271 RGPAKDDTAIRQTIAQKLLAAHIQEDGERRLKELRDRAVI 310


>gi|77458207|ref|YP_347712.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           fluorescens Pf0-1]
 gi|77382210|gb|ABA73723.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           fluorescens Pf0-1]
          Length = 317

 Score =  112 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/318 (12%), Positives = 99/318 (31%), Gaps = 21/318 (6%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK-----------RIA 61
           +KL T  ++L  +  V +      A +  +   +NGE I++  + +            +A
Sbjct: 1   MKLKTLCWLLTGWLSVGM------ANNEPVAARVNGEAISEFRLERFFAEYLEDQGRAVA 54

Query: 62  LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
            ++  K   +L + A+  LI + L  QE  K G+  D  TV     +     G + +   
Sbjct: 55  SIRNPKAYKQLRQAALDTLIDKELLWQESRKRGVKIDEQTVREQVERTRTAIGGTDKFLQ 114

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
              D      +  +      +      +   +       +     + + +     +   R
Sbjct: 115 RLQDAGFDEASFTEYTHRELAAQRMFAELTQVQAPDEQTVRAFFAEHRAEMAAPEQVQAR 174

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF-ASKIHDVSIGKAQYLLES 240
            +L  +  +         +   +   + +   +    + +  +  +     G   Y    
Sbjct: 175 HILIKVAGDADAATVEAARLRLEELRAAIAGGQTFASVAQSGSEDVTASQGGDLGYFARG 234

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKI 297
            + P F+           +    T  G   I + + ++     E      + A     + 
Sbjct: 235 QMVPAFETAAFALKPGEVSEAVRTPFGWHLIFVENHKEAADVPEEQGLETVRAYLARQQQ 294

Query: 298 EKHEAEYVKKLRSNAIIH 315
            +   + + +LR+   I 
Sbjct: 295 TQARRQVLAQLRAENRIE 312


>gi|260432023|ref|ZP_05785994.1| ppic-type ppiase domain protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415851|gb|EEX09110.1| ppic-type ppiase domain protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 282

 Score =  112 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 87/301 (28%), Gaps = 46/301 (15%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
                 L     +P+ +    +    +   +NG+ IT G +    A L  Q    +L+  
Sbjct: 7   FLPSLALAAVMALPVAAESQPST-DTVVARVNGDEITLGHVIATAASLPPQYQ--QLDDE 63

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            + + IVE L                             +  +  S   +     +    
Sbjct: 64  VLYQFIVEQL-----------------------------IQQQLLSQEQEGLTRLNALML 94

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +           V      +  +  ++   + Q  +     E+    +L           
Sbjct: 95  ENEERSLKAVQTVNQITDAQVTDDAIQAAYDAQFAEFQGEDEFNASHIL----------- 143

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
              ++  K+ +             ++ ++     + G   +  +  + P+F+  +    +
Sbjct: 144 VATEEEAKEIKAQLDDGADFAELAKEKSTGPSGPNGGALGWFGKGQMVPEFEQAVIGLEK 203

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              ++P  TQ G   + + DKR    E    A +  +   +  ++     + +L     +
Sbjct: 204 GQVSDPVQTQFGWHVVILNDKR--KSEAPELAEVRDELAQSVRQEAIQAKIDELTQAGNV 261

Query: 315 H 315
            
Sbjct: 262 E 262


>gi|296445011|ref|ZP_06886972.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus
           trichosporium OB3b]
 gi|296257432|gb|EFH04498.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus
           trichosporium OB3b]
          Length = 294

 Score =  112 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 93/307 (30%), Gaps = 49/307 (15%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL----KLQKIN 69
           K L     ++   +  +++  +    +++   +NG  I+D D+   +  L      Q   
Sbjct: 7   KRLRGRGAVVALGVSVLLTAVALPAQAKVLAKVNGVEISDDDVKTALDDLGSGLPRQLEG 66

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
              E   +  LI E L  Q+ ++  +    +                             
Sbjct: 67  KARENYVLDFLIDEQLVVQKAQRDKLGESPDFAKKL------------------------ 102

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                  YL  +++   ++            ++   ++         E     +L    D
Sbjct: 103 ------AYLRDKALMESLLGKIAKDAVTEDAIKKTYDEAAKNQKPETEVHAHHILVPTED 156

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
                              R++  +D  K+    SK      G   +  +  + P+F + 
Sbjct: 157 EAKAALK------------RVKGGEDFGKVADEVSKDPGARGGDLGWFTKDRMVPEFAEA 204

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
             K      ++P  TQ G   I + +KR           +  Q +    +K +++ + +L
Sbjct: 205 AYKLEPGQISDPVKTQFGWHVIKLDEKRPKV--FPPLDQVREQVSRYVAQKAQSDLIVQL 262

Query: 309 RSNAIIH 315
           R  A I 
Sbjct: 263 REGAKIE 269


>gi|114564239|ref|YP_751753.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           frigidimarina NCIMB 400]
 gi|121956468|sp|Q07YK0|SURA_SHEFN RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|114335532|gb|ABI72914.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           frigidimarina NCIMB 400]
          Length = 434

 Score =  112 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/310 (10%), Positives = 100/310 (32%), Gaps = 15/310 (4%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +K        ++   +   S  +     R+   IN  +I + +I+  ++ +K        
Sbjct: 1   MKHSKKIIFALLALAMSNTSMAAPMPLDRVSVQINDGIILESEITNMVSTVKANAKAANQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L    ++ LI+  L+ Q  E+ G+      ++      A+   ++       +
Sbjct: 61  TLPSDDALRTQVIERLILTHLQMQMAERIGLQIGDLQLDQTIENIAKEQKVTVAQMQQTI 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           + +G   + +++ L  +    ++ +     +      EI    + ++   +++   +   
Sbjct: 121 ESEGTSFSQYREQLRQEVTLGEIQRIQVQRRIQVSPQEISGLVKLIQEQGLKDVEFQIGH 180

Query: 185 FSIPDNKLQNQGFVQ---KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             I          ++   +R +   +         +     +S    +  G   ++  ++
Sbjct: 181 ILIEVPSNPTSEQLEGASRRAEIVLKRLNNGDDFRSTAIASSSGPKALEGGIWDFMNINE 240

Query: 242 LHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKI 297
           +   F + +    + +   P  +  G   I + D R       E     ++  + +P   
Sbjct: 241 MPTLFAEVISNAKKGDIIGPIKSGSGFHIIKVVDTRGLQTQEVEEVKSRHILLKPSPILS 300

Query: 298 EKHEAEYVKK 307
           E      +  
Sbjct: 301 EDRAKAMLAN 310



 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 43/149 (28%), Gaps = 4/149 (2%)

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDV 229
           +   V E   R +L        +++           + R           +++       
Sbjct: 279 QTQEVEEVKSRHILLKPSPILSEDRAKAMLANFL-AQVRAGDADFAKLATQYSEDPGSAA 337

Query: 230 SIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIA-LKAY 287
             G+  +   S   P+F Q L    +   + P+ T  G   + +  +R            
Sbjct: 338 KGGELGWADPSMYVPEFTQTLASLQEGQYSEPFRTTHGWHVVQLESRRKTDATEQFNSNR 397

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                   K  +    ++ ++RS A I  
Sbjct: 398 AHQLIFRRKFNEELQNWLDEMRSEAYIEI 426


>gi|119470578|ref|ZP_01613281.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Alteromonadales
           bacterium TW-7]
 gi|119446279|gb|EAW27556.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Alteromonadales
           bacterium TW-7]
          Length = 431

 Score =  112 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/317 (13%), Positives = 106/317 (33%), Gaps = 19/317 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-- 70
           + L       ++   +   ++       ++   +N  VI   +++  +  +K Q      
Sbjct: 1   MTLKKLLVSTVLSISLCQNAFAEPVEIDKVVGIVNQGVILQSEVNSIVDRVKKQAQEQGQ 60

Query: 71  ------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L   A++ L+ + L  Q  E+ G+    + ++      A+  G +  D    +
Sbjct: 61  QLPKDETLRVQAMERLVSQALMMQMAERMGLQISDSQLDQTLANIAKEQGGTISDLRRTV 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA--NKQKMKNITVREYLIRT 182
           +  G     +++ +  +     V + +   +    E E+         +  +  EY I  
Sbjct: 121 EASGDSFQAYREEIRKEITTQQVTRANVDRRIYISEQEVDNLLKIMASQGQSAEEYDIGH 180

Query: 183 VLFSIPDNKLQNQGFVQK-RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
           +L  IP+    ++    K R     E      +        +S    +  G+  ++  ++
Sbjct: 181 ILIDIPNEATADEISAAKTRADKVIELLNDGQEFKRIAISSSSGSKALEGGQLGWMGINE 240

Query: 242 LHPQFQNLLKKSQNN-TTNPYVTQKGVEYIAICDKRD---LGGEIALKAYLSAQ----NT 293
           +   F   +K  + +    P  +  G   I + D R    +        ++  +     +
Sbjct: 241 MPSLFAEAVKSKKKDAIVGPLRSGAGFHIIKVQDVRGLQVVETTEVRSRHILIEPSIILS 300

Query: 294 PTKIEKHEAEYVKKLRS 310
             K     A + K LR+
Sbjct: 301 EEKARNMLAGFAKDLRA 317



 Score = 78.9 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/283 (12%), Positives = 85/283 (30%), Gaps = 10/283 (3%)

Query: 44  TTINGEV-ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             ++  + I++ ++   + ++  Q  + E E      LI    +    E S     ++ V
Sbjct: 146 ANVDRRIYISEQEVDNLLKIMASQGQSAE-EYDIGHILIDIPNEATADEISAAKTRADKV 204

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM- 161
                       ++    S     +G                  V         G L   
Sbjct: 205 IELLNDGQEFKRIAISSSSGSKALEGGQLGWMGINEMPSLFAEAVKSKKKDAIVGPLRSG 264

Query: 162 ----EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
                I     +   +     +    +   P   L  +         A++ R        
Sbjct: 265 AGFHIIKVQDVRGLQVVETTEVRSRHILIEPSIILSEEKARNMLAGFAKDLRAGNADFGE 324

Query: 218 KLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK 275
             ++++      +  G+  +   +   P F++ L    Q+  + P+ TQ G   + + DK
Sbjct: 325 LAKEYSEDPGSALKGGEYDWTDPTTYVPAFRDTLLSLKQDEISEPFRTQFGWHIVQLLDK 384

Query: 276 RDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           R     E+A +          K ++    + +++R  A +  +
Sbjct: 385 RVADKTELAKRNRAHGMLFNRKFKEESFNWQQEMREQAHVEIF 427


>gi|212703745|ref|ZP_03311873.1| hypothetical protein DESPIG_01793 [Desulfovibrio piger ATCC 29098]
 gi|212672827|gb|EEB33310.1| hypothetical protein DESPIG_01793 [Desulfovibrio piger ATCC 29098]
          Length = 650

 Score =  112 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/402 (11%), Positives = 109/402 (27%), Gaps = 95/402 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + ++   F   +    ++++F    + S      S+ +   +NGE IT     +  
Sbjct: 1   MLDYIRSNAQSFGVKVAFAIIILVFMFWGVGSLTDGGSSN-VVAKVNGEAITAQQFEQAY 59

Query: 61  A------------LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV- 107
                        L +   +  +L +  + ELI   L +QE  + G+T     ++Y    
Sbjct: 60  QRAAEYAMRNDPSLTREALVQQKLGRQVLNELISAQLIRQEAARVGMTVSPEEMHYVVSK 119

Query: 108 ---QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK--------------- 149
                        E +   ++ Q +    ++Q LA   +   V++               
Sbjct: 120 LPAFQDAQGKFDPEAYKRAIEAQRMSVAEYEQGLADSILRDKVMRTVAGSAWAAGGEARK 179

Query: 150 ------------------NDFMLKYGNLEME--IPANKQKMKNITVREYLIRTVLFSIPD 189
                              DF       E E        K +  +     +  V  +   
Sbjct: 180 YYDFLTQQRAVEYLYLPAADFAASVKPTEEELGAWYEAHKAELASQPRVEVEYVAVAPES 239

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCN-------------------------------- 217
                    +  +K  E ++ R  +                                   
Sbjct: 240 LVRPESVSAEAALKWYEANKQRFRQPEQVKVAHILVPLAENAPEAAVKQAMEKAARIRSE 299

Query: 218 ----KLEKFASKIHDVS----IGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVE 268
                    A   +  +     G+  ++        F++          + P  +Q G+ 
Sbjct: 300 AEKGDFAAVADANNGPNAAGPGGELGWIQRGQTVKPFEDAAWALQPGQISEPVRSQFGLH 359

Query: 269 YIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
            I + D++D        ++A + A     +  +   + +  L
Sbjct: 360 IIKMEDRKDASVQPFAEVEAEVRATLAKQEGVEKVNDVLDSL 401


>gi|254511296|ref|ZP_05123363.1| ppic-type ppiase domain protein [Rhodobacteraceae bacterium KLH11]
 gi|221535007|gb|EEE37995.1| ppic-type ppiase domain protein [Rhodobacteraceae bacterium KLH11]
          Length = 282

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 85/304 (27%), Gaps = 52/304 (17%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN---GEL 72
                 L     +P+ +      +S +   +NG+ IT G +    + L  Q        L
Sbjct: 7   FLPSLALTAVLALPLAAETKP-DASTVVARVNGDEITLGHVIATASALPAQYQQLEDDVL 65

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               +++L+ + L   E E+                                        
Sbjct: 66  FDFILEQLVQQHLLGLEQEELN----------------------------------TASA 91

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
              +  A        V+        +  ++   + Q  +     E+    +L    ++  
Sbjct: 92  LRLENEARSLRAVQTVEALAAAAVTDEAIQAAYDAQFAEFEGADEFNASHILVETEEDAN 151

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
             +  + +                   ++ ++     + G   +     + P+F+N +  
Sbjct: 152 ALKTQLDE-----------GADFAELAKENSTGPSGPNGGALGWFGTGQMVPEFENAVLS 200

Query: 253 -SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             +   ++P  TQ G   + + DKR           +  +   +  ++     + +L   
Sbjct: 201 LEKGQVSDPVQTQFGWHLVTLNDKRKTQA--PELDAVRTELAQSIQQEAIQARIDELTQQ 258

Query: 312 AIIH 315
           A I 
Sbjct: 259 AQIE 262


>gi|254466473|ref|ZP_05079884.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacterales
           bacterium Y4I]
 gi|206687381|gb|EDZ47863.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacterales
           bacterium Y4I]
          Length = 273

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 80/281 (28%), Gaps = 50/281 (17%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKIN---GELEKIAVQELIVETLKKQEIEKSGI 95
           ++ +  T+NGE IT G +      L  Q        L    + +L+ +T  KQ++     
Sbjct: 19  ANTVVATVNGEEITIGHMIMARENLPEQYKQLPDDVLFNAILDQLVQQTALKQQLH---- 74

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
                                         +         +      +  +V++      
Sbjct: 75  -----------------------------GEVPRYVELSVENEERAMLAANVIEMVMDNA 105

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
            G   +     ++        E+    +L              ++   D  +        
Sbjct: 106 SGEEALRAAYEEKYSSGDGGDEFHAAHIL-----------VETEEEALDVIKELDDGADF 154

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICD 274
               ++ ++     S G   +     + P+F+  + K      + P  TQ G   I + +
Sbjct: 155 ATLAKERSTGPSGPSGGDLGWFTTGRMVPEFEEAVIKLRSGEVSGPVQTQFGWHVILLNE 214

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +R    E      + AQ      +K     V +L + + I 
Sbjct: 215 RRKT--EAPEFDEVRAQLADELQQKAVEARVNELTAASEIE 253


>gi|149927949|ref|ZP_01916199.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Limnobacter sp.
           MED105]
 gi|149823388|gb|EDM82621.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Limnobacter sp.
           MED105]
          Length = 456

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 104/298 (34%), Gaps = 19/298 (6%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--------ELEKIAVQE 79
           +   +    A    I   +N ++IT  ++++++AL++ Q            EL K  +  
Sbjct: 41  LGASNGSGAAAIDGIVAVVNTDIITRSELNRQVALIERQMSRRGAPLPDRIELRKQVLDR 100

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           ++++  + Q+ E+ GI  +   +     + A   GLS EDF + L ++G+    F++ + 
Sbjct: 101 MVMDRAQLQKAEEVGIRIEEAQIEAAMARVADQNGLSLEDFLARLQEEGVSPARFREEVR 160

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN----ITVREYLIRTVLFSIPDNKLQNQ 195
            +     + + +   +    + EI                 E     +L   P +     
Sbjct: 161 SEITLGRLREREVEARIQVSDAEIQNYLAARTKGGAAPNQPEVNWVQLLVKAPSDASGAT 220

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN 255
               +   +A E  L+  K    + +   ++     G+  +     +   F   L K+Q 
Sbjct: 221 LNQARGKVEAIEKALKDGKTVEAIVQTNPELAIDGTGQMGWSGFDAVPTLFSEFLSKAQL 280

Query: 256 NTTNPYVTQKGVEYIAICDKRD-------LGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
           N      +  G   + + ++R+                ++  +  P   E      + 
Sbjct: 281 NAVQTIRSPNGFHVLKVLERRESGAALDSTPVTQTRARHILIRPGPDITEAEARRRLN 338



 Score = 96.3 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 16/137 (11%), Positives = 44/137 (32%), Gaps = 2/137 (1%)

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             +   P   +      ++     E+ +          ++++        G   +L   D
Sbjct: 318 RHILIRPGPDITEAEARRRLNFALEQLQGGAATFDTLAKRYSQDGSASKGGDLGWLYPGD 377

Query: 242 LHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEK 299
             P+F+  + +      +  + ++ G   I + ++R        +           K E+
Sbjct: 378 TVPEFEREMNQLGIGGVSPVFQSRFGFHIIQVVERRQQAASEERQRQAARQAIRANKSEE 437

Query: 300 HEAEYVKKLRSNAIIHY 316
              E++++LR    I  
Sbjct: 438 SYQEWLRQLRDATFIEI 454


>gi|126738446|ref|ZP_01754151.1| PPIC-type PPIASE domain protein [Roseobacter sp. SK209-2-6]
 gi|126720245|gb|EBA16951.1| PPIC-type PPIASE domain protein [Roseobacter sp. SK209-2-6]
          Length = 283

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 75/280 (26%), Gaps = 50/280 (17%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKIN---GELEKIAVQELIVETLKKQEIEKSGI 95
           ++ +  T+NGE IT G +      L  Q        L    + +L+ +T  KQE+     
Sbjct: 29  ANTVIATVNGEAITLGHMIMSRENLPEQYKQLPDDVLFNAILDQLVQQTALKQELN---- 84

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
                                        +               Q     V+       
Sbjct: 85  ----------------------------GEVPHDVQLALDNESRAQLAAN-VIGRVMRSA 115

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
             +  +     K+        E+    +L              ++   D ++        
Sbjct: 116 TTDEALRAAYEKKYSSGDGGDEFHASHIL-----------VESEETALDIKQELDAGADF 164

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICD 274
               +++++     + G   +  +  + P+F+  + +      + P  TQ G   I + +
Sbjct: 165 AVLAKEYSTGPSGPNGGDLGWFTQGRMVPEFEEAVLEMRSGEVSEPVQTQFGWHVIMLKE 224

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           +R              Q       +     +  L S A I
Sbjct: 225 RRKTAA--PSFEEARGQLVQELQNEAIEARISALTSAAEI 262


>gi|192288942|ref|YP_001989547.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris TIE-1]
 gi|192282691|gb|ACE99071.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris TIE-1]
          Length = 316

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 81/280 (28%), Gaps = 47/280 (16%)

Query: 40  SRIRTTINGEVITDGDIS---KRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGIT 96
           + +   +NG  I   D+    + +     Q      ++  +  LI   +  +  E   I 
Sbjct: 41  NPVLAKVNGAEIRQSDVDLAEQELGPSLAQLDPASRKENVLAFLIDMKIVAKAAEDKKIQ 100

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
            +++                                    +   + +  DV+  +     
Sbjct: 101 DNADFKKRL------------------------------DFARNRLLMDDVLAAEGKAAT 130

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
            +  M+   ++   +    +E   R +L    D        ++K                
Sbjct: 131 TDEAMKKVYDEAAKQISGEQEVHARHILVETEDEAKAVAEELKK-----------GADFA 179

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDK 275
              +K +        G   +  +  + P+F            ++P  TQ G   I + +K
Sbjct: 180 ELAKKKSKDPGASDGGDLGFFTKDQMVPEFSAAAFALEPGKISDPIKTQFGWHIIKVEEK 239

Query: 276 RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           R+          + AQ       K +++YV KLR  A I 
Sbjct: 240 RNRKP--PSFDQVKAQIEQYVTRKAQSDYVSKLRQAAKIE 277


>gi|188591256|ref|YP_001795856.1| peptidyl-prolyl cis-trans isomerase (ppiase), involved in
           maturation of outer membrane proteins [Cupriavidus
           taiwanensis LMG 19424]
 gi|170938150|emb|CAP63136.1| peptidyl-prolyl cis-trans isomerase (PPIase), involved in
           maturation of outer membrane proteins [Cupriavidus
           taiwanensis LMG 19424]
          Length = 489

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/300 (13%), Positives = 89/300 (29%), Gaps = 24/300 (8%)

Query: 36  WAMSSRIRTTINGEVITDGDISKRIALLKLQKI--------NGELEKIAVQELIVETLKK 87
             +   +   +N  VIT  ++  R   ++ Q            +L    ++ L++E ++ 
Sbjct: 74  SQLIDEVVAVVNNSVITRRELLDRADEIESQLRAGGRPVPARADLLGEVLERLVMERVQT 133

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           Q  + +GI      V+      A+   ++A +    ++  G+    ++  L  Q     +
Sbjct: 134 QAAQDAGIRVTDQEVDRAIESVAQQNQMNAAELRRRVEASGMTWTKYRDELRKQVQVIRL 193

Query: 148 VKNDFMLKYGNLEMEIPAN----KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
            + +   K    + EI         +       EY +  +L  +P+N    Q    +   
Sbjct: 194 REREVDSKVQVYDGEIDNYLAARGGQGAAAGPTEYNMAQILVRVPENASDAQKQALRAKA 253

Query: 204 DA-EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP-- 260
           +   +            +  +        G   +     L   F N +   Q     P  
Sbjct: 254 EGLLKQAQDGADFAQLAQASSEGPEAAQGGAMGFREIGRLPALFANAVVDLQPGGVAPQV 313

Query: 261 YVTQKGVEYIAICDKR---------DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             +  G   I +  KR                   ++  +  P   E      +  LR  
Sbjct: 314 IESAAGFHVIKLVAKRAAPASGPAAAGKITQTQVRHILIRTGPNMPEAEARRQLGTLRDR 373



 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 56/143 (39%), Gaps = 2/143 (1%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
           +    +     I       +   ++++    +         +   +F+      + G   
Sbjct: 341 KITQTQVRHILIRTGPNMPEAEARRQLGTLRDRITHGGDFADAARRFSQDGSAQNGGDLG 400

Query: 236 YLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG-GEIALKAYLSAQNT 293
           ++   +L P+F+  + +   N  + P VTQ GV  I + ++R+        + +  A+  
Sbjct: 401 WVSPGELVPEFEQAMSRLRPNEISEPVVTQFGVHLIQVLNRRETELSPEKQRDFARAEVR 460

Query: 294 PTKIEKHEAEYVKKLRSNAIIHY 316
             K+     ++V++LRS A + Y
Sbjct: 461 EQKLRAAYDDWVRQLRSQAYVEY 483


>gi|288959403|ref|YP_003449744.1| parvulin-like peptidyl-prolyl isomerase [Azospirillum sp. B510]
 gi|288911711|dbj|BAI73200.1| parvulin-like peptidyl-prolyl isomerase [Azospirillum sp. B510]
          Length = 374

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/325 (10%), Positives = 84/325 (25%), Gaps = 64/325 (19%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMS---------------SRIRTTINGEVITDGDISK 58
           ++  T  + +  C + + ++                       +   +NGE +   D+++
Sbjct: 65  RVFRTALLSVAACGIALAAHAQTPAPATPAPAAAAAPAAPADPVVARVNGEELHKSDVTR 124

Query: 59  RIALLK---LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
            ++ L     Q     +    + +L+   L      K+G+       +            
Sbjct: 125 MVSQLPPQVQQMPIEMIYPAVIDQLVSGKLVSSAGYKAGLADSPEVKDEI---------- 174

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
                               +    + +    ++ +   +     ++        +N   
Sbjct: 175 --------------------KRAEERGVQRAFIQKEIKARVTPEALQKAYQDYLKENPAQ 214

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV-SIGKA 234
            E     +L              ++  K       +        ++ +         G  
Sbjct: 215 EEVKAAHIL-----------VEKEEEAKAIIAQLKKGGDFAKLAKEKSKDAAAAAQGGDL 263

Query: 235 QYLLESDLHPQFQNL-LKKSQNNTT-NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN 292
            Y  +  +   F N          +  P  TQ G   I + D+R           +  Q 
Sbjct: 264 GYFTKDAMVEPFANAAFSMKPGEVSKEPVKTQFGYHIIKVEDRRTQP--QPTLDEVKPQL 321

Query: 293 TPTKIEKHEAEYVKKLRSNAIIHYY 317
             T  +      V++LR  A +  +
Sbjct: 322 EQTLSKDIVTALVEELRGKAKVETF 346


>gi|316931933|ref|YP_004106915.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris DX-1]
 gi|315599647|gb|ADU42182.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris DX-1]
          Length = 305

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 80/284 (28%), Gaps = 47/284 (16%)

Query: 36  WAMSSRIRTTINGEVITDGDIS---KRIALLKLQKINGELEKIAVQELIVETLKKQEIEK 92
              ++ +   +NG  I   D+    + +     Q      ++  +  LI   +  +  E 
Sbjct: 37  AEDANPVLAKVNGAEIRQSDVDLAEQELGPSLAQMDPASKKENVLAFLIDMKIVAKAAED 96

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I   ++                                    +   + +  DV+  + 
Sbjct: 97  KKIQDSADFKKRL------------------------------DFARNRLLMDDVLAAEG 126

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
                +  M+    +   +    +E   R +L    D        ++K            
Sbjct: 127 KAATTDEAMKKVYEEAAKQISGEQEVHARHILVETEDEAKAVAEELKK-----------G 175

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIA 271
                  +K +        G   +  +  + P+F            ++P  +Q G   I 
Sbjct: 176 ADFAELAKKKSKDPGASDGGDLGFFTKDQMVPEFSAVAFALEPGKISDPVKSQFGWHIIK 235

Query: 272 ICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           + +KR+          + AQ       K +++YV KLR  A + 
Sbjct: 236 VEEKRNRKP--PSFDQVKAQIEQYVARKAQSDYVSKLRQAAKVE 277


>gi|260221806|emb|CBA30735.1| hypothetical protein Csp_C25050 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 728

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 92/296 (31%), Gaps = 18/296 (6%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI--------NGELEKIAVQELIVETL 85
           +       I   +N E IT  ++S  +  +  Q            EL ++ ++ +I +  
Sbjct: 3   QQALPGDYIVAVVNSEPITFQELSIEVRRVSQQLTQQGQAAPAPEELRRLVLERMINDKA 62

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
           + Q   + GI  D+  ++      A   G+        L K G+    F+  L  Q    
Sbjct: 63  QLQLAREQGIRMDATAIDRAEQNVASQNGVDVLALRQKLAKDGVTVQSFRDGLRDQLTLS 122

Query: 146 DVVKNDFMLKYGNLEME----IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
            + + +        +++    I   +    +   +E  I  +L  +P+     +      
Sbjct: 123 RLHEREVESSIKVSDVDVDRAIQEQQANNTDPFAQELNIAQILIVVPEKANGEEAAALYV 182

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNP 260
                  R R  +D   L K  S     + G+        L P F N  +        + 
Sbjct: 183 KAQRVLQRARDGEDFTNLVKEFSAADRNNGGQIGLRRGDRLPPSFVNATQGLKVGEIADV 242

Query: 261 YVTQKGVEYIAICDKRDL-----GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             T  G   + + +++               ++  +N+P   +      +   R  
Sbjct: 243 VRTGAGFHILKLVERKAPTRLVQTMVQTRARHILLRNSPQLPQAQAIARLADARQQ 298



 Score = 42.4 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/214 (7%), Positives = 56/214 (26%), Gaps = 7/214 (3%)

Query: 50  VITDGDISKRIALLKLQKINGELEKIAVQE-LI------VETLKKQEIEKSGITFDSNTV 102
            ++D D+ + I   +    +   +++ + + LI                K+         
Sbjct: 134 KVSDVDVDRAIQEQQANNTDPFAQELNIAQILIVVPEKANGEEAAALYVKAQRVLQRARD 193

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
              F    +    +  +    +  +           A Q +    + +      G   ++
Sbjct: 194 GEDFTNLVKEFSAADRNNGGQIGLRRGDRLPPSFVNATQGLKVGEIADVVRTGAGFHILK 253

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +   K   + +          +      +L     + +     ++         +   K 
Sbjct: 254 LVERKAPTRLVQTMVQTRARHILLRNSPQLPQAQAIARLADARQQIVSGKTDFASMARKM 313

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
           +        G   +       P+F+  + + Q+ 
Sbjct: 314 SQDSSAEQGGDLGWASPGMFVPEFEEAMNRLQDE 347


>gi|323697784|ref|ZP_08109696.1| SurA domain [Desulfovibrio sp. ND132]
 gi|323457716|gb|EGB13581.1| SurA domain [Desulfovibrio desulfuricans ND132]
          Length = 323

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/319 (15%), Positives = 110/319 (34%), Gaps = 24/319 (7%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL--------- 63
           +  + +  +  +  I P+ +     +  RI   IN  ++T  D+ + +  +         
Sbjct: 1   MVKVVSLLLGAMLLICPLTAQAEDVVVDRILVKINDSIVTQYDLDQEMKPVYDQIKDRKL 60

Query: 64  --KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
             + Q     L + A+ +L+ + L +QEI++  +      ++    +      L+ E+F 
Sbjct: 61  TAREQTQLEGLRRQALDKLVNDVLIQQEIKRFSVEVSDENIDKEIERVRTERKLTLEEFQ 120

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
             + + G+    F+  L       +++ +    K    + EI    +  K+      ++ 
Sbjct: 121 QMVAQDGLSMEEFRSRLKKLLEKQELIGHMVNSKVVVTDSEIQQEYEARKDDYSMGKMVE 180

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             +  +P      +   +    +              + K++      S G    L   D
Sbjct: 181 LAIILLPSEVSPVEVRERITSGEM--------TFAEAVAKYSVGPGKESGGSIGELSWED 232

Query: 242 LHPQFQNL-LKKSQNNTTNPYVTQKGVEYI---AICDKRDLGGEIALKAYLSAQNTPTKI 297
           L   +QN     S    + P   Q     +    I + R +     ++  +       K 
Sbjct: 233 LADDWQNALKGVSVGGVSTPLTIQNHQALLSPVKINEDRIVPL-EDVRDDIYKDLMQKKR 291

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           E    +Y  KL+ +A+I Y
Sbjct: 292 ETVFTDYFNKLKQSAVIIY 310


>gi|52840553|ref|YP_094352.1| peptidyl-prolyl cis-trans isomerase D (SurA) [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52627664|gb|AAU26405.1| peptidyl-prolyl cis-trans isomerase D (SurA) [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 446

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 93/270 (34%), Gaps = 12/270 (4%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE---- 71
           +     L+      +   +   +  ++   +N  VIT  +++ ++ L K Q I       
Sbjct: 18  MFKRIALVCALFSGVCFAEGKQLLDKVVAIVNDNVITSSELNAQVELSKKQIIAQNMQMP 77

Query: 72  ----LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
               L K  +Q LI   L+ Q  +++GIT ++  ++    + A +  L+       + KQ
Sbjct: 78  DESVLRKQVLQHLIDVDLEMQMAKQNGITIENAEIDEAIEKIAASNHLNLSQMRDEITKQ 137

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
           GI    ++Q +  + +   V +            ++    +    I             I
Sbjct: 138 GISWQEYRQNIRKEMLISRVQQKAVGKDIIVTNEQVEQYLKTSGRIENSNLTYHLKNIVI 197

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHP 244
           P ++      +Q+   +AE    ++ K  +      + +S    +  G       ++L  
Sbjct: 198 PLSEEPTTKQLQRAKIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERHLAELPE 257

Query: 245 QF-QNLLKKSQNNTTNPYVTQKGVEYIAIC 273
            F + ++         P     G   I + 
Sbjct: 258 VFAKEVVHMKVGQVAGPIRAGNGFHLIKLV 287



 Score = 85.1 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 80/277 (28%), Gaps = 9/277 (3%)

Query: 48  GEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
             ++T+  + + +     +  N  L       +I  + +    +      ++  +     
Sbjct: 165 DIIVTNEQVEQYLKT-SGRIENSNLTYHLKNIVIPLSEEPTTKQLQRAKIEAENLLNKIK 223

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM-----E 162
           +    + L+ E+ S     +G            +    +VV        G +        
Sbjct: 224 KGEDFSRLAIEESSGEFALEGGDLGERHLAELPEVFAKEVVHMKVGQVAGPIRAGNGFHL 283

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           I       +N              +  +         K++ +               +++
Sbjct: 284 IKLVAVGGENQRHVITQTHVRHILLKPDASMVPSEAIKQVNNIYRQIQSGKDFALMAKQY 343

Query: 223 A-SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGG 280
           +      V  G   ++   +L P+F+  +     +  + P  TQ G   I +  +R    
Sbjct: 344 SLDAASAVKGGDLGWVNPGELVPEFEKTMNSLPLHKVSKPVKTQYGWHLIEVIARRQKDD 403

Query: 281 EIA-LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             A  K  +       K  +    + + LRS A I+ 
Sbjct: 404 SEAFKKQQVRQFLQQRKFVEAVQNWQQHLRSQAYINI 440


>gi|168704077|ref|ZP_02736354.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gemmata
           obscuriglobus UQM 2246]
          Length = 309

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/308 (10%), Positives = 83/308 (26%), Gaps = 15/308 (4%)

Query: 18  TYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK-----INGEL 72
               L +         +  A +  +  T+NGE IT  ++   +               ++
Sbjct: 5   LALSLTLLAGSTFALAQPPAANPNLAATVNGEQITLAEVDALLKTTLPLTPLTAAQKRQM 64

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               + +++ + L +Q + K+G   D            +  G   +     L        
Sbjct: 65  RVEVLADMVDDVLLRQFLRKNGPKVD----PAEIDAQLKAFGEKLKAEGKTLADFYRETG 120

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             +  +         +           +++      K     V   +   VL +      
Sbjct: 121 QTEAQVKEAWTTAMQLTGYVKSNATEEQLKAYFAANKDHFDRVEVKVRHVVLRAGKSASP 180

Query: 193 QNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKIHDVSIGKAQ--YLLESDLHPQFQNL 249
             +   +++++              +  +K +      + G     Y     +   F   
Sbjct: 181 AERAAAKEKLEAIRADIAGGKLDFADAAKKHSHCPSGPAGGDIGVIYRKGGIVDEAFAKA 240

Query: 250 LKKS-QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
                    +    T  G   I + +++        K+  +     T  ++  A+ + KL
Sbjct: 241 AFALKPGELSGVVETDFGYHLIQVTERKPGTPTTYDKS--ATDVLDTYSDEFRADLIAKL 298

Query: 309 RSNAIIHY 316
           R    I  
Sbjct: 299 RKQGQIQI 306


>gi|311748700|ref|ZP_07722485.1| peptidyl-prolyl cis-trans isomerase (survival protein)
           [Algoriphagus sp. PR1]
 gi|311302821|gb|EAZ81480.2| peptidyl-prolyl cis-trans isomerase (survival protein)
           [Algoriphagus sp. PR1]
          Length = 458

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/328 (10%), Positives = 101/328 (30%), Gaps = 20/328 (6%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
              L+ F   L ++++++        +  S  +  +I   ++  ++ + DI +       
Sbjct: 1   MKILNRFTLTLLSFWMILPLAAQEAPANGSGQVLDKIVAKVDNNILLESDIQRAYLEALA 60

Query: 66  QKING---ELEKIAVQELIVETLKKQEIEKSGITFD----SNTVNYFFVQHARNTGLSAE 118
           Q+  G          + L+V  L   + E   +           +  F    +  G + E
Sbjct: 61  QRQEGVTPPTRCEVFESLMVNKLMVAKAEIDSVVVTDAEVMLQTDQRFNMVLQQFGGNEE 120

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
             +    K         + +  + +    ++            E+ A    +   ++  +
Sbjct: 121 TLAEVYGKTADQIKTEIEDVIKEQLIVQRMRGKITEGLTVSPAEVRAFYNAIPKDSLPLF 180

Query: 179 LIR----TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGK 233
                   ++     +    +   +K  +  ++              ++         G 
Sbjct: 181 TSEATVGQIVKKPEVSPKIKEEIFEKLRQFKQDILDGKSTFSELATAYSEDPGSRTQGGD 240

Query: 234 AQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN 292
             +    +L P+++       Q   + P  +  G+  I + +KR+         ++    
Sbjct: 241 LGFFRSGELAPEYEATALALKQGEISEPVESDFGIHLIQLLEKRNGSFNT---RHILMIP 297

Query: 293 TPTKIE-KHEAEYVKKLR---SNAIIHY 316
            P++ + K    Y+  L+   +N  I +
Sbjct: 298 KPSEDDLKKAERYLDSLKTEINNGTIEF 325


>gi|255262339|ref|ZP_05341681.1| ppic-type ppiase domain protein [Thalassiobium sp. R2A62]
 gi|255104674|gb|EET47348.1| ppic-type ppiase domain protein [Thalassiobium sp. R2A62]
          Length = 281

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/307 (12%), Positives = 78/307 (25%), Gaps = 52/307 (16%)

Query: 13  IKLLTTYFV-LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI--- 68
           +   T +         +          +  +  TING  IT G +    A L  Q     
Sbjct: 1   MSKFTMFLASAASVVTLAAPVLAQDTTADTVVATINGTDITVGHMIITRAQLPQQYQQFP 60

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
              L    + +LI +TL                                   S  L  + 
Sbjct: 61  PDVLFSGILDQLIQQTLL----------------------------------SQSLKNET 86

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                  +         +V+ N          ++   + +        EY    +L    
Sbjct: 87  DRMMLSLENERRSLRAGEVITNLTGNAVTEEAIQAAYDARFSGAEPETEYNASHILVETL 146

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
           +  +  Q  ++                     + ++     + G+  +     +   F+ 
Sbjct: 147 EEAVAVQAEIEA-----------GADFAEVAAEKSTGPSGPNGGQLGWFGPGMMVAPFEA 195

Query: 249 LL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
            + +      + P  TQ G   I + + R    E      L  +      +    + + +
Sbjct: 196 AVVEMEVGTLSGPVETQFGFHIITLNETRVK--EAPAIETLRPELEAELQQSAIEDKITE 253

Query: 308 LRSNAII 314
           LR  A I
Sbjct: 254 LREAAEI 260


>gi|91204225|emb|CAJ71878.1| similar to peptidyl-prolyl cis-trans isomerase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 311

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/309 (12%), Positives = 94/309 (30%), Gaps = 8/309 (2%)

Query: 14  KLLTTYFVLIIFCIVPIVSYK-SWAMSSRIRTTINGEVITDGDISKRIALLKLQ--KING 70
           K    Y   +      I+ +  +  +   I   +NG+ I   D+ KR+ + K    +   
Sbjct: 3   KKAVFYLCAVFLLFPAIICFPENPLLGENIAVVVNGKKIKKDDVDKRLNMFKDADVETYN 62

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
            + +  +++LI + L +  I+K GI      ++   +   +    +  +  +FL      
Sbjct: 63  AIRQEIIEQLITDILLEDFIDKQGIVVTPMEMSRELLLIKKEIADNEGEADAFLRDMLAS 122

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                            ++  F     +  ++    K K         +    + +   N
Sbjct: 123 IGSNLYDFEKTIKHSLALEKYFKGSLDSQNLKRFFEKNKHFFNGEAVRVSHIFIDTKKFN 182

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE---SDLHPQFQ 247
                  V + I   +    +         +++        G   ++     +   P   
Sbjct: 183 SGDMVEKVAQLINTLKSELDKGSDFEELAREYSDCPSASKGGDLGFIQRRGGTYDEPFLS 242

Query: 248 NLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
                     + P  ++ G   I +  K++          +      T +++     +K+
Sbjct: 243 TAFSLRIGKVSEPVKSEYGYHLIKVTGKKEGVA--VNFEDVIDDVRSTMLDEEILGLLKR 300

Query: 308 LRSNAIIHY 316
           LRS A I  
Sbjct: 301 LRSEAKIEI 309


>gi|120599971|ref|YP_964545.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           W3-18-1]
 gi|146292095|ref|YP_001182519.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           putrefaciens CN-32]
 gi|120560064|gb|ABM25991.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           W3-18-1]
 gi|145563785|gb|ABP74720.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           putrefaciens CN-32]
 gi|319425391|gb|ADV53465.1| outer membrane protein maturation factor, peptidyl-prolyl cis-trans
           isomerase, SurA [Shewanella putrefaciens 200]
          Length = 434

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/317 (11%), Positives = 103/317 (32%), Gaps = 19/317 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +K        +    +   +  +     R+   IN  ++ + +I   I  +K        
Sbjct: 1   MKPSKHLIFALFALAISQPTLAAPQPLDRVAVQINDGIVLESEIVSMIGTVKANAKAANQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L    ++ LI+  L+ Q  ++ G+      ++      AR   +S       +
Sbjct: 61  SLPSDSALRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQKMSVAQMQQKI 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           + +G+  + +++ L  +    ++ +     +      EI +  + ++   +++   +   
Sbjct: 121 ESEGLSFSQYREQLREEITLGEIQRIQVQRRIQVSPQEISSLVKLIQEQGMKDVEYQIGH 180

Query: 185 FSIPDNKLQNQGFVQ---KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             I          ++   KR     E               +S    +  G   Y+  ++
Sbjct: 181 ILIDVPNNPTSEQLEASSKRANIVLERLKNGEDFRRTAIASSSGPKALEGGIWDYMNINE 240

Query: 242 LHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQ----NT 293
           +   F + L      +   P  +  G   I I D R       E     ++  +     +
Sbjct: 241 MPTLFAEVLSGAKTGDIIGPIKSGAGFHIIKIMDSRGLQTKEIEEVRARHILLKPSPILS 300

Query: 294 PTKIEKHEAEYVKKLRS 310
             + +    +++K++R+
Sbjct: 301 DDRAKAMLEQFLKQIRA 317



 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/294 (11%), Positives = 84/294 (28%), Gaps = 27/294 (9%)

Query: 49  EVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGI---TFDSNTVNYF 105
           E IT G+I +     ++Q    E+  +    LI E   K    + G       +N  +  
Sbjct: 136 EEITLGEIQRIQVQRRIQVSPQEISSLVK--LIQEQGMKDVEYQIGHILIDVPNNPTSEQ 193

Query: 106 FVQHARNTGLSAEDFSS--------FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
               ++   +  E   +             G        +  +       +  + +    
Sbjct: 194 LEASSKRANIVLERLKNGEDFRRTAIASSSGPKALEGGIWDYMNINEMPTLFAEVLSGAK 253

Query: 158 NLEME-----------IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
             ++            I     +       E +    +   P   L +        +  +
Sbjct: 254 TGDIIGPIKSGAGFHIIKIMDSRGLQTKEIEEVRARHILLKPSPILSDDRAKAMLEQFLK 313

Query: 207 ESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQ 264
           + R    K  +   +++         G+  +   +   P+F   L   + +  + P+ T 
Sbjct: 314 QIRAGEAKFEDLARQYSEDPGSAAKGGELGWADPNIYVPEFAQTLSSLAIDQISEPFRTT 373

Query: 265 KGVEYIAICDKRDLGG-EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            G     + ++R     +              K  +    ++ ++RS+A I  +
Sbjct: 374 HGWHITQLEERRKTDATDQFNSNRAHQLIFRRKFNEELQNWLDEMRSDAYIEVF 427


>gi|299136387|ref|ZP_07029570.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp.
           MP5ACTX8]
 gi|298600902|gb|EFI57057.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp.
           MP5ACTX8]
          Length = 635

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/300 (14%), Positives = 91/300 (30%), Gaps = 14/300 (4%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GELEKIAVQE 79
           VP     +  +   +   +N ++IT  +  +    L  +               +  +++
Sbjct: 65  VPTPITPNGTVVEDVIARVNDQIITRSEYLRSEQQLLQEAQQQSASPADFESRRRDLLRD 124

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           +I E L   + ++ GIT D+ T+        RN   S E       +QG+    FKQ + 
Sbjct: 125 MIDEQLLLSKGKELGITGDAETIRELDEIRKRNHLDSMEALEKAASQQGVSFEDFKQGIR 184

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
             +I   VV+ +          +  A              I      +          V 
Sbjct: 185 NNAIRQQVVQEEVSRHLNMTHAQEDAYYAAHGKDFEVPEQIHLSEILVTTPDNATDAQVA 244

Query: 200 KRIKDAEESRLRLPK---DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQN 255
                A++   +L       +  +  +      + G         L    +N      + 
Sbjct: 245 AAQAKADDLEAKLKAGTSFADLAKSSSGGPTAAAGGDLGDFKRGSLGDVLENATFPLPEG 304

Query: 256 NTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             T P  T++G   + +   +   +     ++  +        ++     Y+ K R +A 
Sbjct: 305 GFTAPIRTRQGFVILRVDKHQAAGIPPLADIEPQVQQAIYLDALQPALRAYLTKARQDAY 364


>gi|85374605|ref|YP_458667.1| peptidyl-prolyl isomerase [Erythrobacter litoralis HTCC2594]
 gi|84787688|gb|ABC63870.1| peptidyl-prolyl isomerase [Erythrobacter litoralis HTCC2594]
          Length = 473

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 84/265 (31%), Gaps = 11/265 (4%)

Query: 44  TTINGEVITDGDISKRIALLKLQKING-------ELEKIAVQELIVETLKKQEIEKSGIT 96
             +NG VIT  DI  R AL+               +    ++ LI ETL+ QE     I 
Sbjct: 84  AVVNGSVITGTDIDHRTALVVASAQGELAEEEMVRVRMQVLRNLIDETLQVQEAAAQEIN 143

Query: 97  FDSNTVNYFFVQHARNT-GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
             ++ VN  + Q A    G   +   ++L   G      K+ +  +  W  +++ +    
Sbjct: 144 ITADEVNQRYAQLAAQNFGNQPDAMDAYLLSIGSSPASLKRQIQGELAWQRLLRRNIAPF 203

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
               E E+  N    +    R      ++        + +  V +  +   E        
Sbjct: 204 INVSEEEV--NDLIKRLEESRGTEEYHIMEIYLPATAETRQAVIQNGQQIMEQLRGGASF 261

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICD 274
                +F+      + G   ++    L  +             T P     G   I + D
Sbjct: 262 LAYARQFSESSTAATGGDLGFVRLETLPAEMATAAQTMQPGQLTGPVEIPGGFVIIYLRD 321

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEK 299
           KR +       A LS +      E+
Sbjct: 322 KRAVLTADPRDALLSLKQISISFEE 346



 Score = 52.4 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 241 DLHPQFQNLL-KKSQNNTTNPYVT-QKGVEYIAICDKR-DLGGEIALKAYLSAQNTPTKI 297
           DL  Q Q  + +      T P+ + Q+GV  + +C +      +      L ++    +I
Sbjct: 394 DLPEQLQGSMLELQVGQATQPFGSLQEGVRVLLLCGRDDPQAADGPSFDVLMSRMEEERI 453

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           +K    Y++ LR++A I Y
Sbjct: 454 QKRARRYLRDLRNDAYIEY 472


>gi|218885391|ref|YP_002434712.1| SurA domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756345|gb|ACL07244.1| SurA domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 320

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/327 (15%), Positives = 108/327 (33%), Gaps = 24/327 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMS-SRIRTTINGEVITDGDISK----R 59
           + + L  F +L     ++ + C+  +      A   ++I   +NGE+IT  D+       
Sbjct: 1   MRSLLRTF-RLAAPVLLVSLACLATVAVVAPRAEQINKIAAVVNGEMITFFDVQAQATPE 59

Query: 60  IALLKLQKINGELEK-------IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
           +  L L + N   ++         +  LI + L  QE E+  IT     V     +  + 
Sbjct: 60  LMRLGLDRNNPAHQEAVRKVHLQVLDSLISDILMNQEAERWKITVQDGEVENELRKFVQR 119

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
           + LS ++F   L +QG+  +  +  +    +   ++      K    + ++       K+
Sbjct: 120 SQLSQQEFERQLTQQGLSMDVMRDRVRKGILRHRLLTLMIARKIVITQEDVKKYYDAHKS 179

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
             V +  +R  L                     ++ R             +   +  S G
Sbjct: 180 QFVTDRTVRLGLVIFAPTANAEALA--------DKVRTGQTTFEQLAASESIGPNPGSGG 231

Query: 233 KAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLS 289
               L  +DL P ++          T+   + +     + +        +        + 
Sbjct: 232 DIGTLKWTDLAPAWKEALDGLKAGETSPVILVEGRKAMLKLVAVTTGRSQTVEEATPEIE 291

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                 K+++   EY K+L   A+I  
Sbjct: 292 NILREPKLQERFTEYTKQLHDKAVIDI 318


>gi|241765841|ref|ZP_04763778.1| SurA domain protein [Acidovorax delafieldii 2AN]
 gi|241364240|gb|EER59412.1| SurA domain protein [Acidovorax delafieldii 2AN]
          Length = 466

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 93/299 (31%), Gaps = 18/299 (6%)

Query: 31  VSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------LEKIAVQELIV 82
            +  +   +  I   +N E +T+ ++  R   ++ Q             L +  ++ LIV
Sbjct: 52  GTGSALRSADFIVAVVNSEPVTNNEVRARAVRVEQQMAQQGSPLPPRDLLAREVLERLIV 111

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           E ++ Q   + GI  D   V       A+   +S ++    L   GI    F++ L  Q 
Sbjct: 112 EKIQLQLAREGGIRVDDYAVGQAEESVAKQNRVSVDEMHRRLAADGISKERFREELRNQL 171

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMK----NITVREYLIRTVLFSIPDNKLQNQGFV 198
           +   + + D   +    ++++    ++ +       +   L   ++    +   Q     
Sbjct: 172 LLLRLRERDVQSRVRVSDLDVDQYLREQQAGADASKLEINLGHILVVVPENATPQQVEER 231

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDV-SIGKAQYLLESDLHPQFQNLLKKSQ-NN 256
           + R + A +             +F+       S G             F +   +     
Sbjct: 232 RVRAQQAADKVRAGEDFAAVAREFSDAAEAKTSGGLLGLRPADRYPELFVSATAQLPLGG 291

Query: 257 TTNPYVTQKGVEYIAICDKRDLGGEIAL----KAYLSAQNTPTKIEKHEAEYVKKLRSN 311
              P  +  G   + + DK   G           ++  +  P   E   A  +   R  
Sbjct: 292 IAGPVRSPAGFHVLKLVDKTSAGVPTVAIQSHARHILLRTGPQLTESAAAARLADYRRR 350



 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 42/139 (30%), Gaps = 2/139 (1%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
               +      +L       +                    + +        G   +   
Sbjct: 323 HARHILLRTGPQLTESAAAARLADYRRRVLAGQADFAELAREHSQDGSAKQGGDLGWSNP 382

Query: 240 SDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEI-ALKAYLSAQNTPTKI 297
               P+F+  +      + + P V++ GV  I + ++R+        +          K+
Sbjct: 383 GRYVPEFEQAMNALKPGDVSEPLVSRFGVHLIQLLERRETKLTQREQRDMARDTVREKKV 442

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           E+  A ++++LR  A + Y
Sbjct: 443 EEAFANWMQELRGRAYVEY 461


>gi|329890123|ref|ZP_08268466.1| PPIC-type PPIASE domain protein [Brevundimonas diminuta ATCC 11568]
 gi|328845424|gb|EGF94988.1| PPIC-type PPIASE domain protein [Brevundimonas diminuta ATCC 11568]
          Length = 457

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 110/289 (38%), Gaps = 14/289 (4%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRI-------ALLKLQKINGELEKIAVQELIVETLK 86
             + +S  I  T+N  +IT  D+ +R+        +   ++  G +++ A+ +LI + L+
Sbjct: 62  PQFRLSDGIIATVNDRIITGFDLRQRMLVLMAMTQVQPTEENIGAIQQQALNDLIDQHLQ 121

Query: 87  KQEIEKSGI-TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
             E+ K          ++      AR  G +   + +FL++ GI    F++ +  +  W 
Sbjct: 122 AAELAKFEQLKIGDAEIDQEIADMARQAGTTPASYINFLEQGGISIPAFREQMRTEIGWR 181

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
           ++V   F  +    + +I    ++M     +   +   ++         Q  +    +  
Sbjct: 182 ELVGGRFRDRARVGKSQIEQTMRQMTESATKPQYLIGEIYLEAARVGGMQEAMNGARQLV 241

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQ 264
           ++   +         +F++       G A ++++  + P  Q+++        +NP    
Sbjct: 242 QQMI-QGAPFMAVARQFSAAPSAARGGDAGWVVQGTVQPALQSVMDTLEAGQLSNPIPVD 300

Query: 265 KGVEYIAICDKRDLGGEIALK-AYLSAQNTPTKIE---KHEAEYVKKLR 309
            GV  + + DKR       +K   +  +      E       + ++ LR
Sbjct: 301 GGVYILYMRDKRSGASTSMVKMKQVMVELPENADEAQVAAATQRLEALR 349



 Score = 72.8 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/267 (13%), Positives = 80/267 (29%), Gaps = 10/267 (3%)

Query: 53  DGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIE--KSGITFDSNTVNYFFVQHA 110
              I + +  +       +        LI E   +             +  +    +Q A
Sbjct: 196 KSQIEQTMRQMTESATKPQY-------LIGEIYLEAARVGGMQEAMNGARQLVQQMIQGA 248

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
               ++ +  ++    +G       Q     ++   +   +       + ++       M
Sbjct: 249 PFMAVARQFSAAPSAARGGDAGWVVQGTVQPALQSVMDTLEAGQLSNPIPVDGGVYILYM 308

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS 230
           ++           +  +     +N    Q          LR    C+ +   A     + 
Sbjct: 309 RDKRSGASTSMVKMKQVMVELPENADEAQVAAATQRLEALRGQLTCDNILTRARSEPGLL 368

Query: 231 IGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS 289
                    +DL PQFQ + +     + +    T  GV  +A+CD+R  G +      + 
Sbjct: 369 GADLGESDVADLLPQFQQVARSAEVGSVSTAVRTPLGVHLLAVCDRRLGGPDAPSAQQVE 428

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           A+            Y++ LR++A+I  
Sbjct: 429 ARLQNQNYAMLGRRYLRDLRADALIEI 455


>gi|122070648|sp|Q5ZYR3|SURA_LEGPH RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
          Length = 429

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 93/270 (34%), Gaps = 12/270 (4%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE---- 71
           +     L+      +   +   +  ++   +N  VIT  +++ ++ L K Q I       
Sbjct: 1   MFKRIALVCALFSGVCFAEGKQLLDKVVAIVNDNVITSSELNAQVELSKKQIIAQNMQMP 60

Query: 72  ----LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
               L K  +Q LI   L+ Q  +++GIT ++  ++    + A +  L+       + KQ
Sbjct: 61  DESVLRKQVLQHLIDVDLEMQMAKQNGITIENAEIDEAIEKIAASNHLNLSQMRDEITKQ 120

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
           GI    ++Q +  + +   V +            ++    +    I             I
Sbjct: 121 GISWQEYRQNIRKEMLISRVQQKAVGKDIIVTNEQVEQYLKTSGRIENSNLTYHLKNIVI 180

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHP 244
           P ++      +Q+   +AE    ++ K  +      + +S    +  G       ++L  
Sbjct: 181 PLSEEPTTKQLQRAKIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERHLAELPE 240

Query: 245 QF-QNLLKKSQNNTTNPYVTQKGVEYIAIC 273
            F + ++         P     G   I + 
Sbjct: 241 VFAKEVVHMKVGQVAGPIRAGNGFHLIKLV 270



 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 80/277 (28%), Gaps = 9/277 (3%)

Query: 48  GEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
             ++T+  + + +     +  N  L       +I  + +    +      ++  +     
Sbjct: 148 DIIVTNEQVEQYLKT-SGRIENSNLTYHLKNIVIPLSEEPTTKQLQRAKIEAENLLNKIK 206

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM-----E 162
           +    + L+ E+ S     +G            +    +VV        G +        
Sbjct: 207 KGEDFSRLAIEESSGEFALEGGDLGERHLAELPEVFAKEVVHMKVGQVAGPIRAGNGFHL 266

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           I       +N              +  +         K++ +               +++
Sbjct: 267 IKLVAVGGENQRHVITQTHVRHILLKPDASMVPSEAIKQVNNIYRQIQSGKDFALMAKQY 326

Query: 223 A-SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGG 280
           +      V  G   ++   +L P+F+  +     +  + P  TQ G   I +  +R    
Sbjct: 327 SLDAASAVKGGDLGWVNPGELVPEFEKTMNSLPLHKVSKPVKTQYGWHLIEVIARRQKDD 386

Query: 281 EIA-LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             A  K  +       K  +    + + LRS A I+ 
Sbjct: 387 SEAFKKQQVRQFLQQRKFVEAVQNWQQHLRSQAYINI 423


>gi|113866541|ref|YP_725030.1| peptidyl-prolyl cis-trans isomerase (rotamase c)protein [Ralstonia
           eutropha H16]
 gi|113525317|emb|CAJ91662.1| Peptidyl-prolyl cis-trans isomerase (rotamase c)protein [Ralstonia
           eutropha H16]
          Length = 491

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/300 (13%), Positives = 91/300 (30%), Gaps = 24/300 (8%)

Query: 36  WAMSSRIRTTINGEVITDGDISKRIALLKLQKI--------NGELEKIAVQELIVETLKK 87
             +   +   +N  VIT  ++  R   ++ Q            +L    ++ L++E ++ 
Sbjct: 76  SQLVDEVVAVVNNSVITRRELLDRADEIEGQLRAAGRPVPARADLLGEVLERLVMERVQT 135

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           Q  +++GI      ++      A+   L+A +    ++  G+    +++ L  Q     +
Sbjct: 136 QAAQEAGIRVTDQEIDRAIESVAQQNRLNATELRRRVEASGMTWTKYREELRKQVQVIRL 195

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNI----TVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
            + +   K    + EI                 EY +  +L  +P+N    Q   Q+   
Sbjct: 196 REREVDSKVQVYDGEIDNYLAARGGQGAASGPTEYNVAQILVRVPENASDAQKQAQRAKA 255

Query: 204 DA-EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP-- 260
           +   +            +  +        G   +     L   F N +   Q     P  
Sbjct: 256 EGLLKQAQGGADFAQLAQANSEGPEAAQGGAMGFREIGRLPALFANAVVDLQAGGVAPQV 315

Query: 261 YVTQKGVEYIAICDKR---------DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             +  G   + +  KR                   ++  +  P   E      +  LR  
Sbjct: 316 VESAAGFHVVKLVAKRAAPASSPAAASKITQTQVRHILIRTGPNMPEAEARRQLSTLRDR 375



 Score =  107 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 57/143 (39%), Gaps = 2/143 (1%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
           +    +     I       +   ++++    +         +  ++F+      + G   
Sbjct: 343 KITQTQVRHILIRTGPNMPEAEARRQLSTLRDRITHGGDFADAAKRFSQDGSAQNGGDLG 402

Query: 236 YLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG-GEIALKAYLSAQNT 293
           ++   +L P+F+  + +   N  + P VTQ GV  I + ++R+        + +  A+  
Sbjct: 403 WVSPGELVPEFEQAMSRLRPNEISEPVVTQFGVHLIQVLNRRETEMSPEKQRDFARAEVR 462

Query: 294 PTKIEKHEAEYVKKLRSNAIIHY 316
             K+     ++V++LRS A + Y
Sbjct: 463 EQKLRAAYDDWVRQLRSQAYVEY 485


>gi|288573832|ref|ZP_06392189.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288569573|gb|EFC91130.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 297

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 82/311 (26%), Gaps = 34/311 (10%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K       L +   +   ++ +      I   +  E +T  D  + +A  +  +     
Sbjct: 1   MKKKNIVLALTLTVALSGAAFAADEKKDEILAKVGPETVTQADFDEVMAGAQPSQAAYFG 60

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
                + L+ +          G          +    A          +           
Sbjct: 61  TPEGKRALVEDMADSVLFYLWGKDNKLTETEKYKETMAELEKRVLAGMAM---------- 110

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                               +      + E+       K        ++     I  +K 
Sbjct: 111 -----------------EKVLSGAKVSDEEVKKFYDDHKAAFEVPESVKASHILIQVSKD 153

Query: 193 QNQGFVQKRIKDAEESRLRLPK----DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
                 +K  K+A + R  +        +  ++ +        G   +  E  + P+F+ 
Sbjct: 154 AGNDLWKKAKKEATKIRKDILAGKVSFEDAAKRDSDCPSKSRGGDLGFFTEGQMVPEFEK 213

Query: 249 LLK-KSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYV 305
                   + ++P  TQ G   I + D +D        +K  +  Q    K     +EYV
Sbjct: 214 AAFATKIGDISDPVKTQFGYHIIKVTDHKDASEQPFDEVKDGIRQQLLQQKQRDTLSEYV 273

Query: 306 KKLRSNAIIHY 316
            KL+    +  
Sbjct: 274 DKLKKTYKVEI 284


>gi|317493318|ref|ZP_07951740.1| SurA domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918711|gb|EFV40048.1| SurA domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 432

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/317 (11%), Positives = 104/317 (32%), Gaps = 18/317 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--- 69
           +K   T  + + FC     +                 V+ + D+   +  +KL       
Sbjct: 1   MKNWRTLILGVAFCANTAFAAPQVVDKVAAVVD--NGVVLESDVDGLMQSVKLNAREAGQ 58

Query: 70  -----GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L    ++ LI++ ++ Q  +K GI  +   V+      A+   +S +   S L
Sbjct: 59  QLPDDATLRHQILERLIMDNIQLQMAKKMGIDINDADVDRAIGNIAQQNHMSLDQMRSRL 118

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
              GI    ++  +  + +  +V  N+   +   L  E+ A  +++      +  +    
Sbjct: 119 AADGINYKTYRDQIRKEMLISEVRNNEVRRRVTILPQEVEALAKQVGAQNGADTELNLSH 178

Query: 185 FSIPDNKLQNQGFV---QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             I   +  +Q  V   +++ +   +   +          +++    +  G+  +    +
Sbjct: 179 ILIALPENPSQQQVDDAEQQARQLVDQLNKGADFGKMAVSYSADSQALKGGQMGWGKIQE 238

Query: 242 LHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTK 296
           L   F        + +   P  +  G   + + D R    ++        ++  + +P  
Sbjct: 239 LPSLFAAALQTAKKGDIIGPIRSGVGFHILKVNDLRGGQGNVSVTEVHARHILLRPSPVM 298

Query: 297 IEKHEAEYVKKLRSNAI 313
            +      ++++     
Sbjct: 299 TDDQARAKLQEIAQQIK 315



 Score = 80.9 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 58/168 (34%), Gaps = 4/168 (2%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                G   +++   +    N++V E   R +L         +Q    K  + A++ + +
Sbjct: 259 IRSGVGFHILKVNDLRGGQGNVSVTEVHARHILLRPSPVMTDDQA-RAKLQEIAQQIKSK 317

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEY 269
                      +      +  G   + + +   P F++  +K  +   + P  +  G   
Sbjct: 318 QITFDEAARAVSQDPGSALKGGDLGWAVPTMYDPAFRDALMKLQKGELSAPVHSSFGWHL 377

Query: 270 IAICDKRDLG-GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           I + D R +   + A K          K  +    ++++ R++A +  
Sbjct: 378 IQLLDTRQVDRTDDAQKDRAYRMLFNRKFAEEAQTWMQEERASAYVKI 425


>gi|307609120|emb|CBW98563.1| hypothetical protein LPW_03901 [Legionella pneumophila 130b]
          Length = 429

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 93/270 (34%), Gaps = 12/270 (4%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE---- 71
           +     L+      +   +   +  ++   +N  VIT  +++ ++ L K Q I       
Sbjct: 1   MFKRIALVCALFSGVCFAEGKQLLDKVVAIVNDNVITSSELNAQVELSKKQIIAQNMQMP 60

Query: 72  ----LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
               L K  +Q LI   L+ Q  +++GIT ++  ++    + A +  L+       + KQ
Sbjct: 61  DESVLRKQVLQHLIDVDLEMQMAKQNGITIENAEIDEAIEKIAASNHLNLSQMRDEITKQ 120

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
           GI    ++Q +  + +   V +            ++    +    I             I
Sbjct: 121 GISWQEYRQNIRKEMLISRVQQKAVGKDIIVTNEQVEQYLKTAGRIENSNLTYHLKNIVI 180

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHP 244
           P ++      +Q+   +AE    ++ K  +      + +S    +  G       ++L  
Sbjct: 181 PLSEEPTTKQLQRAKIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERHLAELPE 240

Query: 245 QF-QNLLKKSQNNTTNPYVTQKGVEYIAIC 273
            F + ++         P     G   I + 
Sbjct: 241 VFAKEVVHMKVGQVAGPIRAGNGFHLIKLV 270



 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 80/277 (28%), Gaps = 9/277 (3%)

Query: 48  GEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
             ++T+  + + +     +  N  L       +I  + +    +      ++  +     
Sbjct: 148 DIIVTNEQVEQYLKTAG-RIENSNLTYHLKNIVIPLSEEPTTKQLQRAKIEAENLLNKIK 206

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM-----E 162
           +    + L+ E+ S     +G            +    +VV        G +        
Sbjct: 207 KGEDFSRLAIEESSGEFALEGGDLGERHLAELPEVFAKEVVHMKVGQVAGPIRAGNGFHL 266

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           I       +N              +  +         K++ +               +++
Sbjct: 267 IKLVAVGGENQRHVITQTHVRHILLKPDASMVPSEAIKQVNNIYRQIQSGKDFALMAKQY 326

Query: 223 A-SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGG 280
           +      V  G   ++   +L P+F+  +     +  + P  TQ G   I +  +R    
Sbjct: 327 SLDAASAVKGGDLGWVNPGELVPEFEKTMNSLPLHKVSKPVKTQYGWHLIEVIARRQKDD 386

Query: 281 EIA-LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             A  K  +       K  +    + + LRS A I+ 
Sbjct: 387 SEAFKKQQVRQFLQQRKFVEAVQNWQQHLRSQAYINI 423


>gi|95930211|ref|ZP_01312949.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133674|gb|EAT15335.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 292

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/286 (11%), Positives = 88/286 (30%), Gaps = 13/286 (4%)

Query: 44  TTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL----------IVETLKKQEIEKS 93
            T+NG  I+  D    +    ++      ++++ +E+          I+      +   +
Sbjct: 6   ITVNGTPISQFDFVNAMQSYSMELYRKTADQLSEEEIEQVQGLAVEQIIARELIFQTALA 65

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
                ++      +        S E+F + L+K GI  + + + L        + +    
Sbjct: 66  QGAIATDEQIKAEMDKVMANFPSEEEFFATLEKAGIDQDSYYRMLRQDLSVKMMTEKKLA 125

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                   E+ A   +  +   +   +R     I   +   +   +K  +   E      
Sbjct: 126 DAPSPAAEEVKAFYDENPDKMKKPGQVRASHILIKVTEDNREEAQKKIEELKNEVTGDAA 185

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAI 272
           +  +   + ++       G   +     +  +F            ++   TQ G   I +
Sbjct: 186 QFGDLARQHSACPSKDKGGDLGFFGPGSMVKEFDQAAFSLEPGQISDIVETQFGYHLILV 245

Query: 273 CDKRDLGG--EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            +++D        +   + +     K       +V++++  A I  
Sbjct: 246 TERKDPESLTLEEVAPQIESFIKDQKGAILLQAWVEEMKEKADIEI 291


>gi|83952309|ref|ZP_00961041.1| PPIC-type PPIASE domain [Roseovarius nubinhibens ISM]
 gi|83837315|gb|EAP76612.1| PPIC-type PPIASE domain [Roseovarius nubinhibens ISM]
          Length = 441

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 109/284 (38%), Gaps = 10/284 (3%)

Query: 6   FTSLSDFIKLLTTYF----VLIIFCIVPIVSYKSWAMSS-RIRTTINGEVITDGDISKRI 60
            T ++   +++  +F    V ++  + P+ +    A S      T+N   IT  +I +R 
Sbjct: 4   MTEMTKKTRMIAKFFQTSAVALVLGLTPLTAAPVIAQSKFEAVITVNNAPITQFEIEQRA 63

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             L+L +  G+   +A ++LI + LK Q   +SGI  +   +     + A    LS  + 
Sbjct: 64  RFLRLLRAPGDPIALAREQLIEDRLKLQAARQSGIEVNEEQIAAGMDRFASQANLSGAEM 123

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
              L  +G+ +  F+ ++     W D+ +  F  +    E ++   +  +      E L+
Sbjct: 124 VKLLASEGVYEETFRAFIIAGVSWSDLTRARFAPRVSISEDDLERARAAVGKGGGVEVLM 183

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
             ++        +      +RI +             +  ++++     S G+  +   +
Sbjct: 184 SELIIPYTPQTQEQVEATARRISEGASE----SSFAAEARRYSATRTAPSGGRLPWTPLN 239

Query: 241 DLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIA 283
           +L    + ++   +  + T+P   Q  V    + D R+      
Sbjct: 240 ELPGGLRGIILGLAPGDVTDPLPLQGAVALFQLRDIRETDVAEP 283


>gi|294084202|ref|YP_003550960.1| SurA domain-containing protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663775|gb|ADE38876.1| SurA domain protein [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 424

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/283 (12%), Positives = 101/283 (35%), Gaps = 9/283 (3%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL-------Q 66
            L   +   I+   +  +   + + + +I   ++G+ IT+ D+ +R+  LK        +
Sbjct: 5   SLFRIFTTSIMLIGMMALGGLNASANIKIVAKVDGKPITNYDVDQRVLFLKAVTNLPETE 64

Query: 67  KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
            I  ++ K A+Q L+ +TLK Q    +                 ++    +E  S+ L +
Sbjct: 65  NIEKQIRKDALQMLVDDTLKMQAALSTNPLVQQQANRPATDLIDQSFASDSESGSAALRR 124

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
             +  +  K   A   IW   +++ F   +  ++ +I    ++++    +  +  + +  
Sbjct: 125 LNLNYDAVKTKFAADLIWSGYLQDKFADIFAEIDGKIDLELERIRADASQPQVNISEIVL 184

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
                 +          +  ++  +        +++++       G+  ++L   L  + 
Sbjct: 185 -APEPNRPLAATMALATEMVKAVKKGADFNAIAQQYSAAGTAQQGGRLGWVLLERLPEKL 243

Query: 247 QNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
           Q ++        ++P      V        R  G     ++ +
Sbjct: 244 QAMIAPLDVGGVSDPIQLDGAVYIFKKTGDRKDGANDISQSRI 286



 Score = 42.4 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 44/154 (28%), Gaps = 5/154 (3%)

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
                       R +L+R VL    +    ++     ++                 E++ 
Sbjct: 273 DRKDGANDISQSRIWLVRAVLPVNAEATKSDRLEAAAQLGRDVTDINDCDSMVALHEEYG 332

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEI 282
           S      +         +L PQ QN + + +    +      +GV    +C +      +
Sbjct: 333 SG-TAPRLEDL---RLGELAPQMQNLVKELNVGEPSEALSFSEGVASFMVCKRLKPELNL 388

Query: 283 ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             +  +               Y+ +LR  A I +
Sbjct: 389 PTRDDIYRVQFNRLFGSLSERYLLRLRRKASIEF 422


>gi|171060558|ref|YP_001792907.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii
           SP-6]
 gi|170778003|gb|ACB36142.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii
           SP-6]
          Length = 336

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/332 (12%), Positives = 95/332 (28%), Gaps = 18/332 (5%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKR- 59
           M +   TS +  ++ ++T  +  +   V  +S       S     +NG  I    + ++ 
Sbjct: 1   MNALPVTSATVRLRRVSTGLLTALVMGVASLSSGPALAQSVFAARVNGVGIPAQRLERQF 60

Query: 60  ----------IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
                     IA L+      EL + A+  LI   L  Q+    G+  D   V     + 
Sbjct: 61  EALLRERQIHIARLQNPARARELRREALDRLIGIELLGQQARALGLEADDAAVERAITEA 120

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
                 SAE F+  +  +G  +   +++         + +     +    E +I A  + 
Sbjct: 121 RSRF-RSAEVFAQRIAIEGHDEASHREHTRKLLSGERLAQRIVDREVHITEADIAAFHEA 179

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKI 226
              +  R   +R     +            +     E   +R              +   
Sbjct: 180 NPALFRRPEQVRVRQLLVALPADAEPALKAQARSRIEALLVRARAGESFEALARTHSDAP 239

Query: 227 HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL--GGEIA 283
                G              ++     +    +    T  G + + + ++          
Sbjct: 240 TRQWGGALDPFGRGSQPRAIEDAAFALAPGALSEVIETSAGWQILQLDERIAAVSVPLDE 299

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           ++  +       + ++     + +LR    + 
Sbjct: 300 VRERIRRHLHDGRGQQAVEREIARLREQGRVE 331


>gi|78357080|ref|YP_388529.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78219485|gb|ABB38834.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 329

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/308 (14%), Positives = 106/308 (34%), Gaps = 22/308 (7%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL---------- 72
           +    V +    +  + ++I   +NGE+IT  D+  R A    +     L          
Sbjct: 28  VSALAVFVAGAGAETVINKIVAVVNGEIITQYDLQARAASKLHRAGLSALDPADAAAIKK 87

Query: 73  -EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
            E   ++++IV+ L  QE E+  +  D   V+           ++ +   + L  +G   
Sbjct: 88  IESETLEDMIVDRLMVQEAERYNLGADDAAVDNELRSLLARMQITEDQLVAQLKSEGQDL 147

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
           + ++  +    +   ++      K      +I A  ++ KN  +++  I   L       
Sbjct: 148 DFYRGLIRNNIMRQKLLSFMVSRKVVVTRQDIEAYYEEHKNEYMQDKSISLSLLVFAPTA 207

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-L 250
                          + R       + ++K++      S G    L  S L  Q++    
Sbjct: 208 DPEPVLR--------DIREGNISFADAVKKYSVGPAASSGGAIGKLDWSSLVSQWKQALE 259

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
             +    + P        Y+ + +  +  +     +   + A+     +++   EY +KL
Sbjct: 260 GVAAGGLSRPIEYDGRAAYLHVDEVIEGTVRPVDEVADEIEAKLREPMLKERFEEYTRKL 319

Query: 309 RSNAIIHY 316
           R  A++  
Sbjct: 320 RERAVVDI 327


>gi|298504157|gb|ADI82880.1| peptidylprolyl cis-trans isomerase lipoprotein, PpiC-type
           [Geobacter sulfurreducens KN400]
          Length = 313

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/315 (13%), Positives = 97/315 (30%), Gaps = 51/315 (16%)

Query: 12  FIKLLTTYFVLIIFCIV-----PIVSYKSWAMSSRIRTTINGEVITDGDISKRIA----L 62
            + +L+    L              +      + ++   +NG+ IT  + +K +      
Sbjct: 6   IVTILSVSLCLAALGGCKGKTESGTTAAPAKKAGQVLVEVNGDAITVENFNKELEGLPPY 65

Query: 63  LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
           LK      E +K  +  ++V  L  Q+ +K G+   +   +                   
Sbjct: 66  LKPMADTPEGKKELLDTMVVRELLYQQAKKDGVDKSAEIADRV----------------- 108

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
                        + L  + +    +K     +    + E+     + K+       I+ 
Sbjct: 109 -------------EELKKRVVVEAYLKKKVEEQVQVSDEELKKFYDQNKDKFKSGAQIKA 155

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
               + D         +K  ++  +            +K +        G   +  + ++
Sbjct: 156 SHILVRD---------EKLAQEIVKELKGGANFEELAKKHSIDSAAAKGGDLGWFSKGNM 206

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEK 299
            P+F+ +     +  T+    TQ G   I +  KR  G      +K  + A   P K ++
Sbjct: 207 VPEFEKVAFGLKEGETSGIVRTQFGYHIIKVTGKRPAGERTFEEVKDQIKAAVLPGKQQE 266

Query: 300 HEAEYVKKLRSNAII 314
              +  + ++  A I
Sbjct: 267 VFQKLKEDIKKGATI 281


>gi|39995127|ref|NP_951078.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Geobacter sulfurreducens PCA]
 gi|39981889|gb|AAR33351.1| PPIC-type PPIASE domain protein [Geobacter sulfurreducens PCA]
          Length = 313

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/315 (13%), Positives = 97/315 (30%), Gaps = 51/315 (16%)

Query: 12  FIKLLTTYFVLIIFCIV-----PIVSYKSWAMSSRIRTTINGEVITDGDISKRIA----L 62
            + +L+    L              +      + ++   +NG+ IT  + +K +      
Sbjct: 6   IVTILSVSLCLAALGGCKGKTESGTTAAPAKKAGQVLVEVNGDAITVENFNKELEGLPPY 65

Query: 63  LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
           LK      E +K  +  ++V  L  Q+ +K G+   +   +                   
Sbjct: 66  LKPMADTPEGKKELLDTMVVRELLYQQAKKDGVDKSAEIADRV----------------- 108

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
                        + L  + +    +K     +    + E+     + K+       I+ 
Sbjct: 109 -------------EELKKRVVVEAYLKKKVEEQVQVSDEELKKFYDQNKDKFKSGAQIKA 155

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
               + D         +K  ++  +            +K +        G   +  + ++
Sbjct: 156 SHILVRD---------EKLAQEIVKELKGGANFEELAKKHSIDSAAAKGGDLGWFSKGNM 206

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEK 299
            P+F+ +     +  T+    TQ G   I +  KR  G      +K  + A   P K ++
Sbjct: 207 VPEFEKVAFGLKEGETSGIVRTQFGYHIIKVTGKRPAGERTFEEVKDQIKAAVLPGKQQE 266

Query: 300 HEAEYVKKLRSNAII 314
              +  + ++  A I
Sbjct: 267 VFQKLKEDIKKGATI 281


>gi|226941261|ref|YP_002796335.1| peptidyl-prolyl cis-trans isomerase [Laribacter hongkongensis
           HLHK9]
 gi|226716188|gb|ACO75326.1| Probable peptidyl-prolyl cis-trans isomerase [Laribacter
           hongkongensis HLHK9]
          Length = 607

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/381 (9%), Positives = 96/381 (25%), Gaps = 87/381 (22%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN 69
           +  +  +    V + F    + SY + A        + GE I   DI + +     Q  +
Sbjct: 8   NTLVIKIILGAVALTFVGFGVGSYTA-ATDDAYLAKVGGEKIYKQDIERALN---GQPAD 63

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF---FVQHARNTGLSAEDFSSFLDK 126
             + +  ++ LI + L   +  + G+      +            N    ++ +  +L  
Sbjct: 64  SAVRQQVLESLIRQKLLLADAGQHGMRVTDAELRRVIAGIPAFQDNGHFDSKRYEEYLQS 123

Query: 127 QGIGDNHFKQYLAIQSIWPD---------------------------------VVKNDFM 153
           Q +    F+  +  + +                                    +    F+
Sbjct: 124 QYMSAEQFQARIRDELMVQQQLSAFVDATFVSPGAVERVHKLLAEQRQINQYRLTAAQFL 183

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                 + ++       K        +R     +   +L     V +          +  
Sbjct: 184 PGVKVDDADVQRFYDSNKARFQTPEKVRLEYVLLSLEELAKTVQVSEADVRKYYEEHKAE 243

Query: 214 --------------------------------------------KDCNKLEKFASKI-HD 228
                                                       +     ++ ++     
Sbjct: 244 LAGDEQRQVAHILIAVPKGASAADKARLKTEAEAIVKEVRSNPARFAALAQEKSADPGSA 303

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY 287
              G   +     +   F++   K ++   ++P  T+ G   I +   +       ++A 
Sbjct: 304 AKGGDLGWFGRGVMVKPFEDSAFKLAKGQVSDPVETEFGYHIIKVEGIK-TPDLSTMQAD 362

Query: 288 LSAQNTPTKIEKHEAEYVKKL 308
           + A+    K      + ++ L
Sbjct: 363 IHARLARQKAGALYRQQLETL 383


>gi|225850985|ref|YP_002731219.1| ppic-type ppiase domain protein [Persephonella marina EX-H1]
 gi|225646600|gb|ACO04786.1| ppic-type ppiase domain protein [Persephonella marina EX-H1]
          Length = 325

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 112/317 (35%), Gaps = 13/317 (4%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK----- 67
           + +     +  ++           +  +++   +    IT+ ++ + + +L         
Sbjct: 4   VIIFLLGLITSVYAYEGFGWNIDPSTKNKVVAKVGDVEITEMEVQRMMKILLPMNFYHRN 63

Query: 68  ----INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
                  E+ + A+Q LI   L   E +K G+      +N    Q  +    S E+    
Sbjct: 64  ITEEKLKEIREKAIQNLIYRELLYYEAKKKGLKVTEKEINNLMDQLIKQYK-SKENLEKL 122

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
           L + G+    FK+ L  + +   ++K   ++   + +++    K K K        +R +
Sbjct: 123 LKQTGLTIEGFKKELEKRLLVDKLIKKYAIVSLTDKDLKEYYEKNKDKFKEPASVKVRYI 182

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
              +  +  + +   +++ K A +         +   +++  +  +  G   Y+ +    
Sbjct: 183 YIKVDPSDPKGREKAREKAKKAYKEIKEGKDFGDVAYRYSDDLSRIKGGDIGYVHKGRFP 242

Query: 244 PQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKH 300
            Q +  + K      +    T  G+  + I DKR         +K  L  + T    E+ 
Sbjct: 243 KQIEEEIYKLDVGQVSKIIETDTGLHIVKIEDKRPPRLVPYEEIKDKLKKELTEVMQERK 302

Query: 301 EAEYVKKLRSNAIIHYY 317
             E +K  + N  +  Y
Sbjct: 303 FNELIKDAKKNLKVEIY 319


>gi|254437017|ref|ZP_05050511.1| PPIC-type PPIASE domain protein [Octadecabacter antarcticus 307]
 gi|198252463|gb|EDY76777.1| PPIC-type PPIASE domain protein [Octadecabacter antarcticus 307]
          Length = 284

 Score =  110 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/305 (11%), Positives = 78/305 (25%), Gaps = 51/305 (16%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN---G 70
           KLL +  +             +   +  +  ++NG  IT G +    + L  Q       
Sbjct: 6   KLLASAALFTFSASFAHADAHADITAETVVASVNGSDITLGQLIMLRSQLPEQYQQLPDD 65

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
            +    V +L+ + L    ++          VN                           
Sbjct: 66  VVFNGLVDQLVNQQLLGDTLDVEPKRIAIAIVNEV------------------------- 100

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                          +VV        G+ +++   + +        EY    +L      
Sbjct: 101 ---------RSMRAGEVVNTFISAPVGDADLQAAYDARFADVAPDTEYNASHIL------ 145

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL 250
                   ++   + +              + ++     S G   +     + P F+  +
Sbjct: 146 -----VTTEEEATEIKAMVDDGADFAETAVEKSTGPSGPSGGDLGWFGLGMMVPAFEEAV 200

Query: 251 -KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
                   + P  TQ G   I + + R+          L  +      ++     +  L 
Sbjct: 201 LTLDAGEVSAPVETQFGWHIIMLNEARETPS--PTLDDLREELAIDIQQQALDALINSLT 258

Query: 310 SNAII 314
            +A I
Sbjct: 259 ESADI 263


>gi|54293303|ref|YP_125718.1| hypothetical protein lpl0351 [Legionella pneumophila str. Lens]
 gi|81679326|sp|Q5WZN0|SURA_LEGPL RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|53753135|emb|CAH14582.1| hypothetical protein lpl0351 [Legionella pneumophila str. Lens]
          Length = 429

 Score =  110 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 93/270 (34%), Gaps = 12/270 (4%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE---- 71
           +     L+      +   +   +  ++   +N  VIT  +++ ++ L K Q I       
Sbjct: 1   MFKRIALVCALFSGVCFAEGKQLLDKVVAIVNDNVITSSELNAQVELSKKQIIAQNMQMP 60

Query: 72  ----LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
               L K  +Q LI   L+ Q  +++GIT ++  ++    + A +  L+       + KQ
Sbjct: 61  DESVLRKQVLQHLIDVDLEMQMAKQNGITIENAEIDEAIEKIAASNHLNLSQMRDEITKQ 120

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
           GI    ++Q +  + +   V +            ++    +    I             I
Sbjct: 121 GISWQEYRQNIRKEMLISRVQQKAVGKDIIVTNEQVDQYLKTAGRIENSNLTYHLKNIVI 180

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHP 244
           P ++      +Q+   +AE    ++ K  +      + +S    +  G       ++L  
Sbjct: 181 PLSEEPTTRQLQRAKIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERHLAELPE 240

Query: 245 QF-QNLLKKSQNNTTNPYVTQKGVEYIAIC 273
            F + ++         P     G   I + 
Sbjct: 241 VFAKEVVHMKVGQVAGPIRAGNGFHLIKLV 270



 Score = 85.5 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 80/277 (28%), Gaps = 9/277 (3%)

Query: 48  GEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
             ++T+  + + +     +  N  L       +I  + +    +      ++  +     
Sbjct: 148 DIIVTNEQVDQYLKTAG-RIENSNLTYHLKNIVIPLSEEPTTRQLQRAKIEAENLLNKIK 206

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM-----E 162
           +    + L+ E+ S     +G            +    +VV        G +        
Sbjct: 207 KGEDFSRLAIEESSGEFALEGGDLGERHLAELPEVFAKEVVHMKVGQVAGPIRAGNGFHL 266

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           I       +N              +  +         K++ +               +++
Sbjct: 267 IKLVAVGGENQRHVITQTHVRHILLKPDASMVPSEAIKQVNNIYRQIQSGKDFALMAKQY 326

Query: 223 A-SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGG 280
           +      V  G   ++   +L P+F+  +     +  + P  TQ G   I +  +R    
Sbjct: 327 SLDAASAVKGGDLGWVNPGELVPEFEKTMNSLPLHKVSKPVKTQYGWHLIEVIARRQKDD 386

Query: 281 EIA-LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             A  K  +       K  +    + + LRS A I+ 
Sbjct: 387 SEAFKKQQVRQFLQQRKFVEAVQNWQQHLRSQAYINI 423


>gi|46580310|ref|YP_011118.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|46449727|gb|AAS96377.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 348

 Score =  110 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 108/299 (36%), Gaps = 22/299 (7%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI-----------AVQEL 80
           +  +    +RI   +NGE+IT  D+  + A   L+     +               +  +
Sbjct: 56  TGAAADSLNRIAAVVNGEMITYFDVQAQAAPEILRAGLDPVRDADAEPVRRITRNVLDSM 115

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I + L  QE E+  IT   + V+  + +  + + L+ E F   L +QG+  +  ++ +  
Sbjct: 116 ISDILISQEAERLKITVQDSEVDNEYRKIVQRSQLAPEQFERQLAQQGLSADLMRERIRR 175

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
             +   ++      K      EI    +  K   V    +R  L   P     +      
Sbjct: 176 GILRHRLLGLMIARKVVVTRDEIAKYYEAHKGQFVSGRKVRLGLVIFPPRDDADALAA-- 233

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTN 259
                 + +       +   + +   +  + G    LL SDL  ++++   +    + + 
Sbjct: 234 ------QVKSGAMTFADLAARHSIGPNPQNGGVIGDLLWSDLSMEWRDTLSELKPGDVSR 287

Query: 260 PYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            ++ +     + +    +  G+    +   +       K+++   EY+ +LRS A+I  
Sbjct: 288 VFLVEGRKAVLQLVASNEGKGQALDDVAEEIENILREPKMQERLQEYIGQLRSRAVIDI 346


>gi|84684613|ref|ZP_01012514.1| PPIC-type PPIASE domain protein [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84667592|gb|EAQ14061.1| PPIC-type PPIASE domain protein [Rhodobacterales bacterium
           HTCC2654]
          Length = 300

 Score =  110 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/327 (11%), Positives = 87/327 (26%), Gaps = 63/327 (19%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMS-------------SRIRTTINGEVIT 52
            T  S    L     + +   +       +                   +  T+NGE IT
Sbjct: 1   MTHTSTRASLFAATLLSVSLALPSWAQDAAPEAEAETDAAPAMEVTVDTVLATVNGEEIT 60

Query: 53  DGDI---SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
            G +    +++     Q  N  L    + +LI +T+  Q I++ G   +    N      
Sbjct: 61  LGHVVAAKEQLPQQYQQLPNDVLLPGLIDQLIQQTVLSQAIDEVGAGVEVRLENE----- 115

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
                                            +  + + +          ++   + Q 
Sbjct: 116 -----------------------------RRTLVAAEKIDDVITEAVDEDAIQAAYDAQY 146

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
                  E+    +L               +     E+++          ++F++     
Sbjct: 147 ADAEPTTEWNASHILV----------ETEAEAADLVEQAKAEDADFAALAKEFSTGPSGP 196

Query: 230 SIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
           + G+  +     +   F+  +   +  + ++P  TQ G   I + + R+ G        +
Sbjct: 197 NGGELGWFSAGMMVEPFETAVADMAAGDISDPVQTQFGWHVIKLNETREKGA--PPLEEV 254

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                         E +  L   A I 
Sbjct: 255 REDIIGQLQTSAVEEALNALMDGATIE 281


>gi|148258757|ref|YP_001243342.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. BTAi1]
 gi|146410930|gb|ABQ39436.1| putative Peptidylprolyl isomerase [Bradyrhizobium sp. BTAi1]
          Length = 274

 Score =  110 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 82/294 (27%), Gaps = 47/294 (15%)

Query: 26  CIVPIVSYKSWAMSSRIRTTINGEVITDGDI---SKRIALLKLQKINGELEKIAVQELIV 82
             + +   ++   ++ +   +NG  I   D+    + +     Q      +   +  LI 
Sbjct: 1   MSLLVAPARAADDANPVLAKVNGAEIRKSDVTLAEEELGPSLAQMDPATKDDNVLSFLID 60

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
             L  +  E   +                                         +   + 
Sbjct: 61  MKLVAKAAEDKKVADSEEFKKRL------------------------------AFTRNRL 90

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           +   ++ ++         M+    +   +    +E   R +L    D     +  + K  
Sbjct: 91  LMDSLLASEGKAATTPDAMKKVYEEASKQIGGEQEVHARHILVETEDEAKAVKAELAK-- 148

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPY 261
                            +K +        G   +  +  + P+F N+         ++P 
Sbjct: 149 ---------GGDFAELAKKKSKDPGASDGGDLGFFTKEQMVPEFANVAFALEPGKISDPV 199

Query: 262 VTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            TQ G   I + +KR+          + +Q       K +A+YV KLR  A I 
Sbjct: 200 KTQFGWHIIKVEEKRNRKP--PEFDQVKSQIETYVTRKAQADYVSKLREAAKIE 251


>gi|218777908|ref|YP_002429226.1| SurA domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218759292|gb|ACL01758.1| SurA domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 330

 Score =  110 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 118/319 (36%), Gaps = 18/319 (5%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL--- 72
           LT  F  ++  +  + S+    +  RI   +N +VI   ++++++A +  +     L   
Sbjct: 10  LTALFSTLLTLMTVVPSFAETELVDRIVAIVNTDVIMLSELNEKMAPILAKIDAAGLPDE 69

Query: 73  ---------EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
                     +  +  ++   L +QE EK G+      V+ +  +  +++ L+ E   + 
Sbjct: 70  QREKTIYKYREDILNTMVSSLLVEQESEKLGVKVMEGEVDSYLERFKQSSHLTDEALRAQ 129

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK--QKMKNITVREYLIR 181
           L+  GI  + F+  +    ++  +   +   K    + E+         +    + Y +R
Sbjct: 130 LEADGISMDLFRNQIHDTILFQKLKTTEVDSKIVITDKEVQDYYNEHIDQYEGKKSYHLR 189

Query: 182 TVLFSIPDNKLQNQ-GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
            +L   P+N  + Q   V+K + +              +E  +++    S G   +    
Sbjct: 190 YILLPYPENATEEQKAAVEKTMGEIIAMFKAGESFPALIENVSNEKIGGSGGDLGFFKAG 249

Query: 241 DLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKI 297
           DL     + +      + T P     G++   + +    +      ++  +       ++
Sbjct: 250 DLTKDLSEKVKIMKPGDITEPMTVDLGLQIFWLEETEMGEGASLEDVRQEIQDLLYNEEV 309

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           +    ++V +L  N+ +  
Sbjct: 310 KHKYEKWVSELEDNSYVKI 328


>gi|237809111|ref|YP_002893551.1| SurA domain-containing protein [Tolumonas auensis DSM 9187]
 gi|237501372|gb|ACQ93965.1| SurA domain protein [Tolumonas auensis DSM 9187]
          Length = 436

 Score =  110 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/310 (9%), Positives = 107/310 (34%), Gaps = 19/310 (6%)

Query: 18  TYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING------- 70
            + +  +   +P+ +  +      +   +N +V+   ++ + +  ++             
Sbjct: 9   KWLLAGVLFALPLCTQAAQQSLDNVIAIVNKDVVVQSELDRLMHKVQADAAEQRQTLPPY 68

Query: 71  -ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
            +L K  +  LI ++L  Q  E+ G+    + ++      A    LS  D  +  +++G+
Sbjct: 69  HQLHKQILDRLIEDSLILQLAERQGLRIGDSQLDQALASIAAEKRLSVADMQAKAEREGL 128

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
               F++ +  + +  ++ +N    +    + E+    +++     +          +  
Sbjct: 129 TPAEFRETVRKEMMISEMRRNQLRQRINITDQEVKQLAKQISEQGNKGQRFHIEHILLSL 188

Query: 190 NKLQNQGF---VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
           +   ++G    V ++ +   +   +           ++    +  G   ++   ++    
Sbjct: 189 SSDADRGEQQRVAEKARQLLQQLKKGADFHQMAVAESADSKALDGGDWGWMTIEEMPSLM 248

Query: 247 QNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGG---EIALKAYLSAQ----NTPTKIE 298
              +  +  +    P  +  G+  I + D +       +     ++  +     +  K E
Sbjct: 249 AEAISGAHKDQFIGPLRSGAGLHIIHVKDMQGQQAIEMQEVNARHILLKTSVILSDEKAE 308

Query: 299 KHEAEYVKKL 308
           +    Y++ +
Sbjct: 309 QMLKGYLRDI 318



 Score = 86.3 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/274 (10%), Positives = 84/274 (30%), Gaps = 9/274 (3%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           ITD ++ +    +  Q   G+        L+  +      E+  +   +  +     + A
Sbjct: 157 ITDQEVKQLAKQISEQGNKGQ-RFHIEHILLSLSSDADRGEQQRVAEKARQLLQQLKKGA 215

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
               ++  + +      G              +   +         G L      +   +
Sbjct: 216 DFHQMAVAESADSKALDGGDWGWMTIEEMPSLMAEAISGAHKDQFIGPLRSGAGLHIIHV 275

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR-----LPKDCNKLEKFASK 225
           K++  ++ +    + +       +     ++ +   +  LR             EK++  
Sbjct: 276 KDMQGQQAIEMQEVNARHILLKTSVILSDEKAEQMLKGYLRDIQSGKASFAKLAEKYSDD 335

Query: 226 I-HDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRD-LGGEI 282
               +  G+  +       P+F+++ K       + P+ T  G   + +  +R+      
Sbjct: 336 TGSALKGGELGWANPEMYVPEFRDMTKNLPIGQLSQPFKTVHGWHIVQVEGRRNLANTPE 395

Query: 283 ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           AL+          +  +    ++ +LR  A I +
Sbjct: 396 ALENRAYQLIYNRRFAEEAQTWIDELRDEAFIKF 429


>gi|311233707|gb|ADP86561.1| SurA domain protein [Desulfovibrio vulgaris RCH1]
          Length = 369

 Score =  110 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 108/299 (36%), Gaps = 22/299 (7%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI-----------AVQEL 80
           +  +    +RI   +NGE+IT  D+  + A   L+     +               +  +
Sbjct: 77  TGAAADSLNRIAAVVNGEMITYFDVQAQAAPEILRAGLDPVRDADAEPVRRITRNVLDSM 136

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I + L  QE E+  IT   + V+  + +  + + L+ E F   L +QG+  +  ++ +  
Sbjct: 137 ISDILISQEAERLKITVQDSEVDNEYRKIVQRSQLAPEQFERQLAQQGLSADLMRERIRR 196

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
             +   ++      K      EI    +  K   V    +R  L   P     +      
Sbjct: 197 GILRHRLLGLMIARKVVVTRDEIAKYYEAHKGQFVSGRKVRLGLVIFPPRDDADALAA-- 254

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTN 259
                 + +       +   + +   +  + G    LL SDL  ++++   +    + + 
Sbjct: 255 ------QVKSGAMTFADLAARHSIGPNPQNGGVIGDLLWSDLSMEWRDTLSELKPGDVSR 308

Query: 260 PYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            ++ +     + +    +  G+    +   +       K+++   EY+ +LRS A+I  
Sbjct: 309 VFLVEGRKAVLQLVASNEGKGQALDDVAEEIENILREPKMQERLQEYIGQLRSRAVIDI 367


>gi|54296347|ref|YP_122716.1| hypothetical protein lpp0376 [Legionella pneumophila str. Paris]
 gi|81679579|sp|Q5X877|SURA_LEGPA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|53750132|emb|CAH11524.1| hypothetical protein lpp0376 [Legionella pneumophila str. Paris]
          Length = 429

 Score =  110 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 93/270 (34%), Gaps = 12/270 (4%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE---- 71
           +     L+      I   +   +  ++   +N  VIT  +++ ++ L K Q I       
Sbjct: 1   MFKRIALVCALFSGICFAEGKQLLDKVVAIVNDNVITSSELNAQVELSKKQIIAQNMQMP 60

Query: 72  ----LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
               L K  +Q LI   L+ Q  +++GIT ++  ++    + A +  L+       + KQ
Sbjct: 61  DESVLRKQVLQHLIDVDLEMQMAKQNGITIENAEIDEAIEKIAASNHLNLSQMRDEITKQ 120

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
           GI    ++Q +  + +   V +            ++    +    I             I
Sbjct: 121 GISWQEYRQNIRKEMLISRVQQKAVGKDIIVTNEQVEQYLKNAGRIENSNLTYHLKNIVI 180

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHP 244
           P ++      +Q+   +AE    ++ K  +      + +S    +  G       ++L  
Sbjct: 181 PLSEEPTTKQLQRAKIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERHLAELPE 240

Query: 245 QF-QNLLKKSQNNTTNPYVTQKGVEYIAIC 273
            F + ++         P     G   I + 
Sbjct: 241 VFAKEVVHMKVGQVAGPIRAGNGFHLIKLV 270



 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 80/277 (28%), Gaps = 9/277 (3%)

Query: 48  GEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
             ++T+  + + +     +  N  L       +I  + +    +      ++  +     
Sbjct: 148 DIIVTNEQVEQYLKNAG-RIENSNLTYHLKNIVIPLSEEPTTKQLQRAKIEAENLLNKIK 206

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM-----E 162
           +    + L+ E+ S     +G            +    +VV        G +        
Sbjct: 207 KGEDFSRLAIEESSGEFALEGGDLGERHLAELPEVFAKEVVHMKVGQVAGPIRAGNGFHL 266

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           I       +N              +  +         K++ +               +++
Sbjct: 267 IKLVAVGGENQRHVITQTHVRHILLKPDASMVPSEAIKQVNNIYRQIQSGKDFALMAKQY 326

Query: 223 A-SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGG 280
           +      V  G   ++   +L P+F+  +     +  + P  TQ G   I +  +R    
Sbjct: 327 SLDAASAVKGGDLGWVNPGELVPEFEKTMNSLPLHKVSKPVKTQYGWHLIEVIARRQKDD 386

Query: 281 EIA-LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             A  K  +       K  +    + + LRS A I+ 
Sbjct: 387 SEAFKKQQVRQFLQQRKFVEAVQNWQQHLRSQAYINI 423


>gi|148358511|ref|YP_001249718.1| peptidyl-prolyl cis-trans isomerase SurA [Legionella pneumophila
           str. Corby]
 gi|296105860|ref|YP_003617560.1| peptidyl-prolyl cis-trans isomerase SurA [Legionella pneumophila
           2300/99 Alcoy]
 gi|148280284|gb|ABQ54372.1| peptidyl-prolyl cis-trans isomerase D (SurA) [Legionella
           pneumophila str. Corby]
 gi|295647761|gb|ADG23608.1| peptidyl-prolyl cis-trans isomerase SurA [Legionella pneumophila
           2300/99 Alcoy]
          Length = 429

 Score =  110 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 93/270 (34%), Gaps = 12/270 (4%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE---- 71
           +     L+      I   +   +  ++   +N  VIT  +++ ++ L K Q I       
Sbjct: 1   MFKRIALVCALFSGICFAEGKQLLDKVVAIVNDNVITSSELNAQVELSKKQIIAQNMQMP 60

Query: 72  ----LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
               L K  +Q LI   L+ Q  +++GIT ++  ++    + A +  L+       + KQ
Sbjct: 61  DESVLRKQVLQHLIDVDLEMQMAKQNGITIENAEIDEAIEKIAASNHLNLSQMRDEITKQ 120

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
           GI    ++Q +  + +   V +            ++    +    I             I
Sbjct: 121 GISWQEYRQNIRKEMLISRVQQKAVGKDIIVTNEQVEQYLKTAGRIENSNLTYHLKNIVI 180

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHP 244
           P ++      +Q+   +AE    ++ K  +      + +S    +  G       ++L  
Sbjct: 181 PLSEEPTTKQLQRAKIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERHLAELPE 240

Query: 245 QF-QNLLKKSQNNTTNPYVTQKGVEYIAIC 273
            F + ++         P     G   I + 
Sbjct: 241 VFAKEVVHMKVGQVAGPIRAGNGFHLIKLV 270



 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 80/277 (28%), Gaps = 9/277 (3%)

Query: 48  GEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
             ++T+  + + +     +  N  L       +I  + +    +      ++  +     
Sbjct: 148 DIIVTNEQVEQYLKTAG-RIENSNLTYHLKNIVIPLSEEPTTKQLQRAKIEAENLLNKIK 206

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM-----E 162
           +    + L+ E+ S     +G            +    +VV        G +        
Sbjct: 207 KGEDFSRLAIEESSGEFALEGGDLGERHLAELPEVFAKEVVHMKVGQVAGPIRAGNGFHL 266

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           I       +N              +  +         K++ +               +++
Sbjct: 267 IKLVAVGGENQRHVITQTHVRHILLKPDASMVPSEAIKQVNNIYRQIQSGKDFALMAKQY 326

Query: 223 A-SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGG 280
           +      V  G   ++   +L P+F+  +     +  + P  TQ G   I +  +R    
Sbjct: 327 SLDAASAVKGGDLGWVNPGELVPEFEKTMNSLPLHKVSKPVKTQYGWHLIEVIARRQKDD 386

Query: 281 EIA-LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             A  K  +       K  +    + + LRS A I+ 
Sbjct: 387 SEAFKKQQVRQFLQQRKFVEAVQNWQQHLRSQAYINI 423


>gi|291279541|ref|YP_003496376.1| hypothetical protein DEFDS_1151 [Deferribacter desulfuricans SSM1]
 gi|290754243|dbj|BAI80620.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 314

 Score =  110 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/317 (13%), Positives = 102/317 (32%), Gaps = 23/317 (7%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING----- 70
           +   F+L IF +    +        ++   +NG+ I + +++  IA L L+         
Sbjct: 5   IILGFLLAIFIVSFAFA------EEKVAAKVNGKAIYESEVNTVIAELLLKNGIAPSSVD 58

Query: 71  -------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
                  E++K  +++LI   +  Q  +        N VN    +         E   + 
Sbjct: 59  FNNPQLVEIKKKILEQLIDREVLAQHSKTFTYKGIENDVNKKLDELKSGFKTDKEYKDAL 118

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                      ++      +   +  + +  K    E E      K K+  V +  +   
Sbjct: 119 QKNNLTETELKEKIKKNILVKKQL--DSYKSKITVSEQEKKDFYNKNKDKFVIKDSVHVK 176

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
              +     ++    +K I        +     +  +K++        G   Y+    + 
Sbjct: 177 HIVLLTGDKRSDEEAKKLIDKIYSELKKGVNFEDLAKKYSEDGSAKMGGDLGYITRGKVV 236

Query: 244 PQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKH 300
           P+F+    +      + P+ +Q G   + + DK+         +K  ++   +  K+E  
Sbjct: 237 PEFEKVAFETEVGKISKPFKSQFGYHILKVVDKKKGKKLSYDEVKDQITKILSDQKLETM 296

Query: 301 EAEYVKKLRSNAIIHYY 317
               ++  +    I  Y
Sbjct: 297 IKSNIENWKKQDKIERY 313


>gi|254463317|ref|ZP_05076733.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Rhodobacterales
           bacterium HTCC2083]
 gi|206679906|gb|EDZ44393.1| peptidyl-prolyl cis-trans isomerase SurA, putative
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 416

 Score =  110 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 94/284 (33%), Gaps = 5/284 (1%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
              +  S   F +                V Y +          +N   IT+ +I +R+ 
Sbjct: 1   MDHMKFSFKSFTRTCAHALACGALLTFGSVQYSNAQGLFATAIKVNDRSITNFEIDERVK 60

Query: 62  LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
            L L +  G+  K+A ++LI + LK    +  GI+     V+    + A    L   +F 
Sbjct: 61  FLGLLRTPGDHRKLAREQLIEDRLKLGAAQSVGISPTQEEVDAGMGEFAGRVNLETAEFI 120

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
             ++  G+ ++ F+ ++     W  +V+  F  +    E ++        +      L+ 
Sbjct: 121 KAINAGGVSEDAFRAFVLSGLAWRQLVQAKFGSRITVSEEDVDRLIAASGSGGGIRVLLS 180

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
            ++   P ++        +R               ++  ++++       G+  +L  + 
Sbjct: 181 EIIMPAPPSQAAAVQERAER----ISQITSTAAFASEARRYSASPSKARSGRLDWLPITQ 236

Query: 242 -LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL 284
              P    LL  +    T+P   Q  +    +    +       
Sbjct: 237 LPAPLRPLLLGLAPGEITDPIPLQNAIALFQLRGIEESDVPEPK 280



 Score = 43.5 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 233 KAQYLLESDLHPQFQ-NLLKKSQNNTTNPYVTQKG--VEYIAICDKRDLGGEIALKAYLS 289
                  S++       L K     T+       G  +  + +C +     +   +A LS
Sbjct: 329 DRDSKKPSEIPTDIALELAKMDPGETSTALTRADGQTLVVLMLCGRTPELEQEVDRAELS 388

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAII 314
                 ++      Y+++LR++A I
Sbjct: 389 LGLQNQRLASFSKGYLEELRADARI 413


>gi|15888445|ref|NP_354126.1| hypothetical protein Atu1105 [Agrobacterium tumefaciens str. C58]
 gi|15156137|gb|AAK86911.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 315

 Score =  110 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 77/292 (26%), Positives = 142/292 (48%), Gaps = 7/292 (2%)

Query: 28  VPIVSYKSWAMSSRIR-TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLK 86
           + +V Y   A +       +N   IT+ DI++R+A LKLQ+ +G L + A ++L+ E LK
Sbjct: 23  MAVVPYAGQAFADSTVKIVVNKTPITNDDIARRVAFLKLQRQSGNLNEKAREQLVDEALK 82

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
           ++EI +  ++  +  V+  F + A N  +  E  +  L + G+G  HFK ++A+Q  WP 
Sbjct: 83  REEIARVKMSVSTQDVDAAFARFAGNNKMKPEQLTKVLAQAGVGAEHFKAFIAVQMSWPR 142

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           +V   +  +      ++    ++     V        +  +     +N     KR  +AE
Sbjct: 143 LVNARYGARGKMSNQDLVTRLKERGEKPVTTEYFLQQVIFVIPEAKRN-AITGKRKAEAE 201

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQK 265
            SR R P   ++   FA+ + DV+I     +L  +L   ++  + K  +  TT   VT+K
Sbjct: 202 ASRKRYPGC-DQAMSFAATMRDVAIKDLGRILAPELPEDWKALVEKTKEGGTTGTRVTEK 260

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH---EAEYVKKLRSNAII 314
           GVEY+AIC +R +  + A +    +++     +     E +Y+++LR  A I
Sbjct: 261 GVEYLAICKQRQVSDDYAAEMVFKSEDLMKAKDGENPNEKKYIEELRKKAQI 312


>gi|300024688|ref|YP_003757299.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526509|gb|ADJ24978.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 311

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 44/310 (14%), Positives = 88/310 (28%), Gaps = 52/310 (16%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI---SKRIALLKLQKING 70
           ++  T F +     +            ++  TI+G+ IT+GD+      I          
Sbjct: 3   RIFPTAFTVAFAVALLGAPGIQAFAQDKVVATIDGKPITEGDLAVAESEIGSDMGTMPGP 62

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
           +     ++ LI                                 L AE        QG  
Sbjct: 63  QKRTSLLEFLID------------------------------NQLFAEAGEKAKLDQGPD 92

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                 YL  +++     +        + +     + Q        E   R +L      
Sbjct: 93  FETRLAYLKRRALRELYFEKVIKGSVSDADARKIYDDQVKLLKPEEEVSARHIL------ 146

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL 249
                   +++ K+ +    +        ++ +         G   Y     + PQF+ +
Sbjct: 147 -----VETEEQAKELKAKLDKGADFAQLAKENSKDPGSKDDGGNLGYFGHGQMVPQFEEV 201

Query: 250 LKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
           + K  +   + P  TQ G   + + D R         +K  ++      K +K       
Sbjct: 202 VFKLKKGEVSAPVKTQFGWHLVKLEDSRTKQPPAFEIVKDRIAQSLLLQKAQKTA----T 257

Query: 307 KLRSNAIIHY 316
           +LR+NA I  
Sbjct: 258 ELRANAKIEI 267


>gi|221234696|ref|YP_002517132.1| peptidyl-prolyl cis-trans isomerase [Caulobacter crescentus NA1000]
 gi|220963868|gb|ACL95224.1| peptidyl-prolyl cis-trans isomerase [Caulobacter crescentus NA1000]
          Length = 449

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 103/285 (36%), Gaps = 16/285 (5%)

Query: 39  SSRIRTTINGEVITDGDISKRIALL-------KLQKINGELEKIAVQELIVETLKKQEIE 91
           S  +   +N ++I+  D+ +R+ LL         Q+   ++E+ A++ LI E L+ QE++
Sbjct: 54  SESVAAVVNDDIISSYDLMQRMRLLMATSGMQPTQENLPQIEQEALRSLIDERLQMQELK 113

Query: 92  KSGITFD------SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
           +               V       A++  L  E     L  QGIG + ++  L  +S W 
Sbjct: 114 RVEKQQKITIISTDKEVEEQIGDIAQSNRLQPEQLKQQLVAQGIGLDTWRAQLRAESSWQ 173

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
             ++  +  +    E +I A ++++ +   +     + +F                    
Sbjct: 174 SWIQGRYGSRLRIGEDQIKAYQRRLADAAAKPQYQISEVFLDAARVGG-MEVAVNGATQL 232

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQ 264
                +         +F+      + G+  ++ + ++  +    L +      + P   +
Sbjct: 233 INQMQQGAPFAAVARQFSGSATAANGGEVGWVSQGEMPTEVDAALEQLRPGQLSRPIQVK 292

Query: 265 KGVEYIAICDKRDLGGEIALK-AYLSAQNTPTKIEKHEAEYVKKL 308
            GV  I + DKR       +    ++A       E   A   K+L
Sbjct: 293 DGVYIIYLRDKRAGSKTAIVDLKQVAAPLAADATEAQIAAATKQL 337



 Score = 79.7 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 2/125 (1%)

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
              +  +    K   + + ++      LE  A+K+  +  G       +DL P FQ    
Sbjct: 324 DATEAQIAAATKQLVDLKPKITSC-QSLEATAAKVDGLVAGDLGEAEITDLAPAFQEAAN 382

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
           K      ++P  T  G+  IA+C KR  G        +  +    ++      Y++ LR+
Sbjct: 383 KLEVGQISDPIRTDAGLHLIAVCGKRQGGANAPTHDQIENRLRGQQLALIAKRYLRDLRN 442

Query: 311 NAIIH 315
            A I 
Sbjct: 443 QATIE 447


>gi|332970909|gb|EGK09885.1| peptidyl-prolyl cis-trans isomerase [Psychrobacter sp. 1501(2011)]
          Length = 487

 Score =  109 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 64/173 (36%), Gaps = 3/173 (1%)

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           +      +     ++I     K  N  +     +     +  ++  +    +++I D  E
Sbjct: 314 IGQVTEPQITPEGIDIVKLVDKHTNDNMIIPQWKVRHILVKTDERNSDALAEQKINDLYE 373

Query: 208 SRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQK 265
              R     +    ++         G   ++ E  + P+F+ ++K++   + + P+ +Q 
Sbjct: 374 QLRRDADFASLAATYSDDPGSAGRGGDLDWVAEGQMVPEFEEMMKRTPEGDYSTPFKSQF 433

Query: 266 GVEYIAICDKRDLGGEIALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           G   + +   R       +K  L           + + +++++LR+NA +  +
Sbjct: 434 GWHILKVEGVRQKDVSDTVKRNLAREALYQRLAPQAQEDWLQELRANAYVEVF 486



 Score = 92.4 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 41/310 (13%), Positives = 105/310 (33%), Gaps = 29/310 (9%)

Query: 33  YKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI--------NGELEKIAVQELIVET 84
             +   ++ I   +N   I   +++  +A  + +             L+   +  LI+  
Sbjct: 71  ISTRESTNGIIAIVNDTPILKSELASAVATAQARIQASGQPAPSPQRLQNDVLNGLILRE 130

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLS--AEDFSSFLDKQGIGDNHFKQYLAIQS 142
           L+   ++++GI  D N VN    + A++ GL    E   +   KQ       +  +  + 
Sbjct: 131 LQLDMVKRAGIRPDENAVNQSLGRLAQSQGLKSLTELQQALDAKQPGRYAAVRAQVIEEE 190

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR- 201
               + ++    +    + ++ A     +   ++    RT+   +P +   N+    ++ 
Sbjct: 191 SLKALQQSQVARRVRITDHDVDAFLASPEAQKLQSTEYRTIHIRVPFSDDYNRITDSEKK 250

Query: 202 -----IKDAEESRLRLPKDCNKLEKFASKIHDV-----SIGKAQYLLESDLH-PQFQNLL 250
                 + A+E           L + ++            G   +   + L     + + 
Sbjct: 251 AAMQIAQQAQELLKSSDDADMVLSQLSAGTAKNYIAPVQGGDMGFHPAAGLPIDIAKQIT 310

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN-------TPTKIEKHEAE 303
                  T P +T +G++ + + DK      I  +  +           +    E+   +
Sbjct: 311 PLEIGQVTEPQITPEGIDIVKLVDKHTNDNMIIPQWKVRHILVKTDERNSDALAEQKIND 370

Query: 304 YVKKLRSNAI 313
             ++LR +A 
Sbjct: 371 LYEQLRRDAD 380


>gi|163792785|ref|ZP_02186762.1| hypothetical protein BAL199_18098 [alpha proteobacterium BAL199]
 gi|159182490|gb|EDP66999.1| hypothetical protein BAL199_18098 [alpha proteobacterium BAL199]
          Length = 329

 Score =  109 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/278 (10%), Positives = 65/278 (23%), Gaps = 42/278 (15%)

Query: 42  IRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           +   +    +T  D+      L  Q     L+                           T
Sbjct: 81  VVAKVGDGEVTLADLIAMREDLPPQYRQMPLQ---------------------------T 113

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
           +    ++ A +  L A    +    +        +    Q +    +      +     +
Sbjct: 114 IYPALLERAIDGRLIANTARAADLAKREDVARRIRRAEDQVLSQVYLTETIAAQVTEDAL 173

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
                    +     E     +L    D        + K                   ++
Sbjct: 174 RERYKTFAAEQSGREEAHASHILLDTEDQAKAVIADLDK-----------GGDFAALAKE 222

Query: 222 FASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTT-NPYVTQKGVEYIAICDKRDLG 279
            ++       G   +     + P+F Q     +    +  P  +Q G   I + +KR   
Sbjct: 223 RSTDPAGAEGGDLGWFSAEQMVPEFSQAAFALTPGTYSKEPVKSQFGWHVIKLVEKR--T 280

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            E      +  Q       +     +  LR+   I  +
Sbjct: 281 TEAPAFEQVRDQLASELSRELITAKLDTLRAGVKIERF 318


>gi|163855066|ref|YP_001629364.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella petrii DSM
           12804]
 gi|163258794|emb|CAP41093.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella petrii]
          Length = 516

 Score =  109 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 33/348 (9%), Positives = 90/348 (25%), Gaps = 62/348 (17%)

Query: 26  CIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGELEKIAV 77
              P  + +       I   +N +VIT  ++    A                  L +  +
Sbjct: 45  ATAPQPAPQGEQFVDGIAAVVNKDVITLREVESGAARATEDLKHRGIQVPPPDVLRRQVL 104

Query: 78  QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY 137
           Q LI+E L+KQE ++ GI  +   ++      A    +      + ++K G+    ++Q 
Sbjct: 105 QSLIMERLQKQEADRLGIRVNDAQIDQAIETIAGRNRIPVAQMRAEIEKSGVTWAQYRQS 164

Query: 138 LAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI-----------------------T 174
           L        + +          + E+ A  +   +                         
Sbjct: 165 LGNDIRMNRLRQRAVDSNIIITDAEVDAFLKDRAHNPAAGTGFSGQPAGQRAPQPTQSGP 224

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKA 234
            +  L + ++             ++K+ +       +     N     +     +  G  
Sbjct: 225 EQVALAQILVRVPEGASSSEVARLRKKAEGLLAQLQQGGDFANLAASSSDGPEALQGGVM 284

Query: 235 QYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDK------------------ 275
                      F + +        +    +  G   + + D+                  
Sbjct: 285 GARPLDGWPDLFIKAIASLQPGQVSGLIQSGNGFHILKVLDRAGGNRPAPAQAAAPQPPV 344

Query: 276 ------------RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
                         +        ++  + +    +    + ++++R  
Sbjct: 345 APQPGAGMPAHQGPVQVTQTHARHILIKTSAVMSDDQARQRLEQIRQR 392



 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 13/137 (9%), Positives = 45/137 (32%), Gaps = 2/137 (1%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
               +       + +    Q+  +  +          +   +++   +    G   ++  
Sbjct: 365 HARHILIKTSAVMSDDQARQRLEQIRQRIVNGGASFADMARQYSQDANAPQGGDLGWVNP 424

Query: 240 SDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAYLSAQNTPTKI 297
            ++ P F+  +        + P ++  G   I + ++R+    +   +          + 
Sbjct: 425 GEMVPSFEQAMNALPVGGVSQPVLSPFGWHLIQVEERREHDVSDELQRMQARQILFERRA 484

Query: 298 EKHEAEYVKKLRSNAII 314
           E    +++ +LR+ A I
Sbjct: 485 EPAFEDWLAQLRNEAYI 501


>gi|120602308|ref|YP_966708.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           vulgaris DP4]
 gi|120562537|gb|ABM28281.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           vulgaris DP4]
          Length = 343

 Score =  109 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 108/299 (36%), Gaps = 22/299 (7%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI-----------AVQEL 80
           +  +    +RI   +NGE+IT  D+  + A   L+     +               +  +
Sbjct: 51  TGAAADSLNRIAAVVNGEMITYFDVQAQAAPEILRAGLDPVRDADAEPVRRITRNVLDSM 110

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I + L  QE E+  IT   + V+  + +  + + L+ E F   L +QG+  +  ++ +  
Sbjct: 111 ISDILISQEAERLKITVQDSEVDNEYRKIVQRSQLAPEQFERQLAQQGLSADLMRERIRR 170

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
             +   ++      K      EI    +  K   V    +R  L   P     +      
Sbjct: 171 GILRHRLLGLMIARKVVVTRDEIAKYYEAHKGQFVSGRKVRLGLVIFPPRDDADALAA-- 228

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTN 259
                 + +       +   + +   +  + G    LL SDL  ++++   +    + + 
Sbjct: 229 ------QVKSGAMTFADLAARHSIGPNPQNGGVIGDLLWSDLSMEWRDTLSELKPGDVSR 282

Query: 260 PYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            ++ +     + +    +  G+    +   +       K+++   EY+ +LRS A+I  
Sbjct: 283 VFLVEGRKAVLQLVASNEGKGQALDDVAEEIENILREPKMQERLQEYIGQLRSRAVIDI 341


>gi|91776233|ref|YP_545989.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacillus
           flagellatus KT]
 gi|91710220|gb|ABE50148.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacillus
           flagellatus KT]
          Length = 272

 Score =  109 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 40/308 (12%), Positives = 96/308 (31%), Gaps = 50/308 (16%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVI--TDGDISKRIALLKLQKING 70
           +KL T+  +  +     ++     A ++    T+NG+ I  +  D   + A  + Q ++ 
Sbjct: 1   MKLTTSALIATV--AFGMLQPAFAAGTNGSVATVNGKPIKQSLYDYIAKEASSRGQTVDD 58

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
            ++ + + +LI   L  QE +++G+    + +                            
Sbjct: 59  NVKNVIINKLIGSELIYQEAQRTGLDKQPDYLAKE------------------------- 93

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                +    + +    +++       +      A ++  + +  +EY  R +L      
Sbjct: 94  -----ELTRRELLVNTFLQDYIKKNPVSEADIKLAYEKYKQELGDKEYSARHIL------ 142

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF--Q 247
                   +   KD      +        ++ +         G   +   + +   F   
Sbjct: 143 -----VSTEAEAKDIIAQLGKGGDFAKLAKEKSKDPGSQEKGGDLGWFSAAGMVKPFSDA 197

Query: 248 NLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
            +  +    TT P  TQ G   I + D R           +         +++  + +  
Sbjct: 198 VVKLQKGKYTTTPVQTQFGWHVIKLEDTRATQP--PSYDDVKDGLQKQLQQRNLEKLLTD 255

Query: 308 LRSNAIIH 315
           LRS A I 
Sbjct: 256 LRSKAKIE 263


>gi|298528166|ref|ZP_07015570.1| SurA domain protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511818|gb|EFI35720.1| SurA domain protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 326

 Score =  109 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 100/297 (33%), Gaps = 22/297 (7%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQ-----------KINGELEKIAVQELIV 82
              +  +RI   +NGE IT  D+ KR+ +                   E  +  ++++I 
Sbjct: 36  AEASSVNRIVAHVNGESITLFDLEKRVEMFLGLFEDISLDELPPVQQEETRRHVLEQMIN 95

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           + L +QE E+  I   +  +     +  +N  ++ E+F   L  QG+    +K  +    
Sbjct: 96  DILMRQEAERYQIEVRNREIQEHIERVKQNNNMNQEEFEQHLRAQGLSLEDYKDQIRDSM 155

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           +   V+      K       I    +       +E  +   +  +P  +       + + 
Sbjct: 156 LRQRVMNIMVQRKTVVTSDRIKEYYEDNIQDFKKERKVHLKVLVVPRVEEAETLLDKIKE 215

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPY 261
            +         +     E ++        G    +    + P+++           + P+
Sbjct: 216 GEY--------QFAEAAENYSQGPGASEGGDIGMVRWDRMRPEWREALKNMEAGEISEPF 267

Query: 262 VTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             Q     + + +  D G      ++  +  +     +EK   EY++ LR  A+I  
Sbjct: 268 AMQGQGVLLRVEEIHDEGAVPLEEVEEEIRDELFDKMLEKRFDEYIQGLRDRAVIDI 324


>gi|84516316|ref|ZP_01003676.1| PPIC-type PPIASE domain [Loktanella vestfoldensis SKA53]
 gi|84510012|gb|EAQ06469.1| PPIC-type PPIASE domain [Loktanella vestfoldensis SKA53]
          Length = 415

 Score =  109 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 101/268 (37%), Gaps = 4/268 (1%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELI 81
            ++   + +    +         T+N  VIT  ++++RI LL++    G++ + A   LI
Sbjct: 19  AVLALALGLGQPATAQNQFAPAITVNERVITQYELTQRIRLLEVFGTRGDIAQAARDALI 78

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
            + LK+QEI++ G+      +N    + A    +    F++ L + G+     + +++I 
Sbjct: 79  ADRLKQQEIDRVGLQVPPEAINAALDEFAGRADMDLAQFNAMLAQNGVDAVTLRDFVSIG 138

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
             W + V+  F  +    + +I   + ++   T    ++   +                +
Sbjct: 139 VTWREYVRARFNREVTVTDADIARAQGQIGRATSEMEVLLNEIIIAAP---PEMADRAAQ 195

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNP 260
             D                + ++       G+  +L  ++  PQ Q+L+        T P
Sbjct: 196 AADQIAQMRSFADFEAAARQVSALPSRDQGGQLDWLPIANYPPQLQSLILDLDTGEVTEP 255

Query: 261 YVTQKGVEYIAICDKRDLGGEIALKAYL 288
            +   G+    +  KR+     A  A +
Sbjct: 256 IMIPNGIALFQMRGKREALRPAAAPASI 283



 Score = 37.7 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 253 SQNNTTNPYVTQKG--VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
             N  +       G  + ++ +C +   G        L  Q    ++       V+ LR+
Sbjct: 349 DPNEVSTNLTRDNGQTLVFLMLCQRNAAGAAETDPDALRNQIRGQRLTTLADALVEDLRA 408

Query: 311 NAII 314
            A+I
Sbjct: 409 QAVI 412


>gi|332283295|ref|YP_004415206.1| survival protein [Pusillimonas sp. T7-7]
 gi|330427248|gb|AEC18582.1| survival protein [Pusillimonas sp. T7-7]
          Length = 489

 Score =  109 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 35/334 (10%), Positives = 87/334 (26%), Gaps = 51/334 (15%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------LEKIAVQEL 80
                 S      I   +N +VIT   ++K   L + Q             L+K  +Q +
Sbjct: 35  SAPQQASQQFVDGIAAVVNKQVITLQQVNKEARLAQEQLQRQNIPVPDYAVLQKQVLQRM 94

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I+E L++QE E+ GI      V+      A    ++ +   + ++K G   + + Q L  
Sbjct: 95  IMEELERQEAERLGIKVSDAQVSQAVQTIAERNRITPKQLRAEIEKTGGKWDDYLQGLRQ 154

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI-----------------RTV 183
           +     + +          + E+ A  +                             + +
Sbjct: 155 EVRTDLLRQRTVDSTIVISDAEVDAFLKSQGQSAPASAPTAPEPAARPAGPQILGLAQIL 214

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
           +             ++ + +D  +               +     +  G+          
Sbjct: 215 VAVPEGASSAQVQALRLKAEDLLKQVQGGADFGGVAAASSDGPQALDGGELGVRPVEGWP 274

Query: 244 PQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG----------------------- 279
             F +          +    +  G   + +  +                           
Sbjct: 275 DLFIKATQNLQAGQVSGIVQSGNGFHILKVLTRGQPQSQAGSPSAPPTTAQQPAPMQQGP 334

Query: 280 --GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
                    ++  + T    ++  +  + +LR  
Sbjct: 335 MMVTQTHARHILIKTTQVMSDEKASNRLAQLRQR 368



 Score = 99.0 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 44/138 (31%), Gaps = 2/138 (1%)

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
                   I   ++ +      R+    +         +  ++++        G   +L 
Sbjct: 339 QTHARHILIKTTQVMSDEKASNRLAQLRQRLENGESFEDLAKRYSDDATAPQGGDLGWLT 398

Query: 239 ESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-YLSAQNTPTK 296
             +  P FQ  +     N  + P  +Q G   I + ++R    E   +           +
Sbjct: 399 PGETVPAFQRAMDALQPNQISQPIQSQFGWHLIQVLERRTKNMENEFRRMQARQLLFQRR 458

Query: 297 IEKHEAEYVKKLRSNAII 314
           +E    +++ +LR  A I
Sbjct: 459 VEPAFEDWLSQLRGEAYI 476


>gi|119385325|ref|YP_916381.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paracoccus
           denitrificans PD1222]
 gi|119375092|gb|ABL70685.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paracoccus
           denitrificans PD1222]
          Length = 279

 Score =  109 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/303 (9%), Positives = 73/303 (24%), Gaps = 44/303 (14%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAM-SSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           +L     + +     + +    A  +  +  T+NGE IT G +      L  Q   G  +
Sbjct: 1   MLKPLLAVSVLLSAAVPALPVLAQDADTVVATVNGEAITLGQMVAMRQGLDAQATQGLPD 60

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
                 ++ + +++  + ++                                        
Sbjct: 61  SALWDLMLDQMIRQTAVAQAAEPLSKRDAVAL---------------------------- 92

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                  +      +    + K    E +    K         +        +       
Sbjct: 93  -------EIEKRAYLAGSVLEKIAAAEPDEAELKAAYDQAFGGQAEPAVEYNAAHILVKT 145

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKK 252
            +           +            E+ ++     + G   +     +   F + +   
Sbjct: 146 REEAEAIA-----KQLAEGADFGALAEEKSTDNSGPNKGDLGWFQPEQMVEPFAEAVKAL 200

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
            +   + P  TQ G   I + D R++         +  Q             ++K  + A
Sbjct: 201 EKGQVSEPVETQFGWHVIKLNDTREVTP--PAFEEIKEQLAVQVRRDKVQAEIEKRVTEA 258

Query: 313 IIH 315
            + 
Sbjct: 259 KVE 261


>gi|259417083|ref|ZP_05741002.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Silicibacter sp.
           TrichCH4B]
 gi|259345989|gb|EEW57803.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Silicibacter sp.
           TrichCH4B]
          Length = 283

 Score =  109 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 89/284 (31%), Gaps = 50/284 (17%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN---GELEKIAVQELIVETLKKQEIE 91
           +   ++ +   +NGE IT G++    A L  Q  +     L K  + +LI +T+ KQ++ 
Sbjct: 25  AELNANTVVAKVNGEEITVGNMIVARAKLPAQYQSLPDDLLFKALLDQLIQQTVLKQQLH 84

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
                                                       ++     +  DV+++ 
Sbjct: 85  GDTPE---------------------------------YVRLSVEHEERSLLASDVIESV 111

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                    +    + +   +    E+    +L    ++ +  +  +             
Sbjct: 112 MEDAQTEDAIRDAYDARYSSDDGGDEFNASHILLESEEDAVSIKEQLDA----------- 160

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYI 270
                   ++ ++     + G+  +     + P+F+  + +      + P  TQ G   I
Sbjct: 161 GADFAALAKESSTGPSGPNGGELGWFENGRMVPEFEAAVAEMRPGEVSEPVQTQFGWHII 220

Query: 271 AICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            + D+R    E      +  +      ++   + + +L ++A I
Sbjct: 221 KLNDRR--KLEAPDYEDVREEIGLELAQQAVEDRINQLTASATI 262


>gi|331006695|ref|ZP_08329972.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
           isomerase SurA) [gamma proteobacterium IMCC1989]
 gi|330419503|gb|EGG93892.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
           isomerase SurA) [gamma proteobacterium IMCC1989]
          Length = 432

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 109/303 (35%), Gaps = 13/303 (4%)

Query: 22  LIIFCIVPIVSYKSWAMS--SRIRTTINGEVITDGDISKRIALLKLQKI-------NGEL 72
           + +   VP+++ ++ A      I   +  ++I   ++ ++I   K++            L
Sbjct: 17  IGLLTCVPLIALQAQANENIDGIIAIVKDDIIFAQELEQKIHQAKIRLQARNQKTDEKRL 76

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +   +  LI+E L+    +++ +      ++    Q       +   F  +L  Q +   
Sbjct: 77  QSQLLDALILEKLQLSLAKQNNLVATDAEIDNSIAQTKAQLQSNGASFDDYLAAQNLSQT 136

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             ++ +  + +   V +     +    + E+    +  +        +      +P    
Sbjct: 137 QARKEIEKEVLISKVQQAVISQRINITDTEVDNYLESKEGQEWLTPRLHLGQIFLPYTAK 196

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLK 251
             Q  +QK  K   +   R  +     ++F+   +    G      + DL P F + + K
Sbjct: 197 NKQQTMQKAQKIYRDVSKRTNEFGVFAQRFSQGPNAEKGGDIGIQRKEDLPPLFVERVDK 256

Query: 252 KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK---AYLSAQNTPTKIEKHEAEYVKKL 308
            +    T P+ +  GV  +A+ D++     I  +    ++  + T    E+   + + +L
Sbjct: 257 LAVGEITQPFFSDAGVHILALFDRQGAEPVIVTQYKVRHILVKPTDLFTEEEAQKKINEL 316

Query: 309 RSN 311
           R  
Sbjct: 317 REK 319



 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 85/272 (31%), Gaps = 9/272 (3%)

Query: 51  ITDGDISKRIALLKLQK---INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
           ITD ++   +   + Q+       L +I +        +  +  +      S   N F V
Sbjct: 162 ITDTEVDNYLESKEGQEWLTPRLHLGQIFLPYTAKNKQQTMQKAQKIYRDVSKRTNEFGV 221

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
              R +     +    +  Q   D        +  +    +   F    G     I A  
Sbjct: 222 FAQRFSQGPNAEKGGDIGIQRKEDLPPLFVERVDKLAVGEITQPFFSDAGVH---ILALF 278

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI- 226
            +     V     +     +    L  +   QK+I +  E  ++        ++++  I 
Sbjct: 279 DRQGAEPVIVTQYKVRHILVKPTDLFTEEEAQKKINELREKIIQGASFATIAQEYSDDIG 338

Query: 227 HDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALK 285
             +  G   +       P F+  ++ +  N  + P+ +  G   + +  +R       +K
Sbjct: 339 SKLDGGDVGWSSPGVFVPAFEKAMQTTAINTISQPFKSTFGWHILTVEGQRSKDIFDTVK 398

Query: 286 A-YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
              +       + +     ++K+LR ++ +  
Sbjct: 399 RSQVRNIIGQQRFQDELTIWLKELRESSYVEI 430


>gi|156935427|ref|YP_001439343.1| peptidyl-prolyl cis-trans isomerase SurA [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156533681|gb|ABU78507.1| hypothetical protein ESA_03285 [Cronobacter sakazakii ATCC BAA-894]
          Length = 428

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 41/311 (13%), Positives = 111/311 (35%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +L+   +V   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGITLVVNTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNANQAGQQLPDDSTL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  N
Sbjct: 67  RHQILERLIMDQIMLQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA--NKQKMKNITVREYLIRTVLFSIPDN 190
            ++  +  + I  +V  N+   +   L  E+     +   +N    E  +  +L  +P+N
Sbjct: 127 TYRAQIRKEMIISEVRNNEVRRRVTILPQEVETLAEQVGNQNDASTELNLSHILIPLPEN 186

Query: 191 KLQNQG-FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
              +Q    + + +   +              +++    +  G+  +    +L   F   
Sbjct: 187 PTADQVSEAEAQARSIIDQARNGGDFGKLAITYSADQQALKGGQMGWGRIQELPSVFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   I + D R     +        ++  + +P   ++   + 
Sbjct: 247 LSTAKKGDVIGPIRSGVGFHIIKVNDLRGQSQTVSVTEVHARHILLKPSPIMTDQQARQK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEEI--AADIK 315



 Score = 82.8 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 83/273 (30%), Gaps = 16/273 (5%)

Query: 58  KRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
           + +  L  Q  N       +  L    +   E   +    ++       +  ARN G   
Sbjct: 155 QEVETLAEQVGNQNDASTELN-LSHILIPLPENPTADQVSEAEAQARSIIDQARNGGDFG 213

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------FMLKYGNLEMEIPAN 166
           +   ++   Q         +  IQ +     +                  G   +++   
Sbjct: 214 KLAITYSADQQALKGGQMGWGRIQELPSVFAQALSTAKKGDVIGPIRSGVGFHIIKVNDL 273

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
           + + + ++V E   R +L         +Q   QK  + A + +           +F+   
Sbjct: 274 RGQSQTVSVTEVHARHILLKPSPIMT-DQQARQKLEEIAADIKSGKTTFAQAAREFSQDP 332

Query: 227 -HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG-GEIA 283
                 G   +       P F++ L   S+   + P  +  G   I + D R     + A
Sbjct: 333 GSANQGGDLGWAAADVYDPAFRDALMSLSKGQMSTPVHSSFGWHLIELLDTRKSDRTDAA 392

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            K          K  +  A ++++ R++A +  
Sbjct: 393 QKDRAYRMLFNRKFSEEAATWMQEQRASAYVKI 425


>gi|118588533|ref|ZP_01545942.1| hypothetical protein SIAM614_24667 [Stappia aggregata IAM 12614]
 gi|118439239|gb|EAV45871.1| hypothetical protein SIAM614_24667 [Stappia aggregata IAM 12614]
          Length = 296

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 77/291 (26%), Gaps = 48/291 (16%)

Query: 31  VSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI---NGELEKIAVQELIVETLKK 87
            +  S A    +   +    IT+ D++     L  +       +  K+ +  ++   L  
Sbjct: 19  STVLSAAEPDDVVAKVGDTEITEADLAFAAQDLGKELQRFPPAQWRKLLLDVMVDMELMA 78

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
               + G+  D +                                    +L ++++    
Sbjct: 79  HAAREEGLDKDPDFQRQL------------------------------DFLKLRALRNAY 108

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           +      +  + E++   +K+        E   R +L             +         
Sbjct: 109 LAQKIDGEVTDEEVQAAYDKEFADFEGAEEINARHILVKDKAEAEAIIAELD-------- 160

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT--NPYVTQK 265
                        + ++     + G   Y  +  + P F+      +  T    P  TQ 
Sbjct: 161 ---GGADFAELAREKSTGPSGPNGGSLGYFAKGQMVPPFEAAAFALEPGTYTKEPVETQF 217

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G   I + DKR    E      ++       + +     + +L+    +  
Sbjct: 218 GWHVIKLEDKRRQ--EKPAFEEVANGLRQQLMRERYDARMAELKDQVAVEI 266


>gi|148653552|ref|YP_001280645.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp.
           PRwf-1]
 gi|148572636|gb|ABQ94695.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp.
           PRwf-1]
          Length = 460

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 92/285 (32%), Gaps = 14/285 (4%)

Query: 47  NGEVITDGDISKRIALLKLQKINGELEKIAVQEL--------IVETLKKQEIEKSGITFD 98
           N   IT+ DI   +A  + Q++     +     +        I E+ K+  ++ +    +
Sbjct: 175 NRVRITEQDIDAFLASPEAQRLQSAEYRTIHIRIPFSDDYNRITESEKQTALQIAQQAKN 234

Query: 99  SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV---VKNDFMLK 155
                                      + G    H    L            V      +
Sbjct: 235 LLMNTDDAQSVLDELSAGIAKNYVAPVQGGDMGYHEASGLPTDIAKQITPLNVGQVTEPQ 294

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
                +++     K  N  +     +     I  ++  +    +++I D  E        
Sbjct: 295 ITPEGIDVVKLVDKRNNDNMIIPQWKVRHILIKTDEQNSDALAEQKINDLYEQLRHDADF 354

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAIC 273
                 +++        G   ++ E  + P+F+ ++K++   + + P+ +Q G   + + 
Sbjct: 355 SALASTYSNDPGSAGRGGDLDWVAEGQMVPEFEEMMKRTPKGDYSIPFKSQFGWHILKVE 414

Query: 274 DKRDLGGEIALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           D R+      +K  L           + + +++++LR+NA I  +
Sbjct: 415 DTREKDVSDTVKRNLAREALYQRLAPQAQEDWLQELRANAYIQIF 459



 Score = 86.7 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 105/309 (33%), Gaps = 29/309 (9%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI--------NGELEKIAVQELIVETL 85
                ++ +   +N   I    +   +A  + +             L+   +  LI+  L
Sbjct: 45  SVRESTNGMIALVNDTPILKSQLVSAMATAQARIQASGQPAPSAQRLQNDVLNSLILRQL 104

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLS--AEDFSSFLDKQGIGDNHFKQYLAIQSI 143
           +   ++++GI  D++ VN    + A++ GL+  ++   +   KQ       +  +  +  
Sbjct: 105 QLDMVKRAGIRPDADVVNQSLARFAQSQGLTSLSQLQQTLDAKQPGSYASLRAQVIEEES 164

Query: 144 WPDVVKNDFMLKYGNLEMEIPAN--KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
              + ++    +    E +I A     + + +   EY    +     D+  +     ++ 
Sbjct: 165 LKALQQSQVANRVRITEQDIDAFLASPEAQRLQSAEYRTIHIRIPFSDDYNRITESEKQT 224

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHD---------VSIGKAQYLLESDLHPQF-QNLLK 251
                +    L  + +  +    ++           V  G   Y   S L     + +  
Sbjct: 225 ALQIAQQAKNLLMNTDDAQSVLDELSAGIAKNYVAPVQGGDMGYHEASGLPTDIAKQITP 284

Query: 252 KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNT-------PTKIEKHEAEY 304
            +    T P +T +G++ + + DKR+    I  +  +                E+   + 
Sbjct: 285 LNVGQVTEPQITPEGIDVVKLVDKRNNDNMIIPQWKVRHILIKTDEQNSDALAEQKINDL 344

Query: 305 VKKLRSNAI 313
            ++LR +A 
Sbjct: 345 YEQLRHDAD 353


>gi|150014979|ref|YP_001307233.1| peptidylprolyl isomerase [Clostridium beijerinckii NCIMB 8052]
 gi|149901444|gb|ABR32277.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 362

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 32/342 (9%), Positives = 97/342 (28%), Gaps = 28/342 (8%)

Query: 4   KVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL 63
           K    L  F+  L    + +      ++     A+   +  T+  E IT GD+ K +   
Sbjct: 17  KTLKKLKKFVAALAMVTIAVSAMGCKMIEKTPEAIQKTVLATVGNEKITKGDLDKEMEKY 76

Query: 64  KLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
             Q                    + +K  +  L+ + +  Q+  +  +    + +N    
Sbjct: 77  TAQLKQQYGDNYESNAQVKDQLQQAKKQELDSLVTQKVVLQKATELNLKPSDDDINKQVD 136

Query: 108 QHARNTGLSAEDFSSFLD--KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
                      +   F    +Q        + +   ++    V+ D +      + ++  
Sbjct: 137 DQIAQIKSQYSEEGQFESVLEQNGLTEDQLKDVVKNNVIMQAVQQDIVKDIEVTDDDVQT 196

Query: 166 NKQKMKNITVRE----YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
              + K+    +         ++     +   +      +  D +             ++
Sbjct: 197 YYNENKDSKYTQGAGANASHILIAEKASDGSIDYDASLTKANDIKAKLDSGADFAKLAKE 256

Query: 222 FA-SKIHDVSIGKAQYLLESD---LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
            +       + G   ++  +    +           +   + P  +Q G   I     +D
Sbjct: 257 NSTDSGTKDNGGSLGFVAYNSTQLVAEFMDGFKNLKEGEISAPVKSQFGYHIIKATGLKD 316

Query: 278 --LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
             +     +K  + +     K +   +  + + +++  +  Y
Sbjct: 317 SQVTPFEQVKDQIKSSLLQQKQQDALSSKITEWKTDLKVKTY 358


>gi|296131722|ref|YP_003638969.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermincola sp. JR]
 gi|296030300|gb|ADG81068.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermincola potens
           JR]
          Length = 352

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 102/336 (30%), Gaps = 39/336 (11%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +S F K+L    +L+   +V            +    +NGE IT   + KR+  +KL   
Sbjct: 1   MSKFRKILGLALILVFAVVVAGCGA-------KTVAEVNGEKITQEQLDKRVNKMKLAYE 53

Query: 69  NG--------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
                            ++K  + ++I + L KQ  EK G+      V   F +  +   
Sbjct: 54  QQGASFEGEQGKQMLEAIKKQTLDQMIDQLLIKQAAEKEGVAPSDAEVQKRFDEIKKRFK 113

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
              E   +  +          +    Q    D +           E ++    ++ K+  
Sbjct: 114 SEKEFEDALKNYNYTE--EELKEYIAQQAMTDALFQKVTKDVKVTEEDMKKYYEERKDSF 171

Query: 175 VREYLIRTVLFSIPDNKLQN-----QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
                I+     I  +         +   +K  ++               ++ +      
Sbjct: 172 KEPEKIKARHILIKFDTANEKVGRKEEEAKKMAEELIAKLNNGADFAELAKEKSEDPGSK 231

Query: 230 SIGKA-------QYLLESDLHPQFQNLLKK-SQNNTT-NPYVTQKGVEYIAICDKRD--L 278
           + G          Y     +  +F +      +   T  P  TQ G   I + DK+    
Sbjct: 232 NDGGLLKDPMGSDYFARGVMVKEFDDAAFALKKGEITKKPVKTQFGYHIIKVEDKKPEKQ 291

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                 K  +      T+ ++   +Y++ L+  A I
Sbjct: 292 KTYEEAKEQIKRDLPNTRKQEVFNKYIEGLKQKAKI 327


>gi|332185309|ref|ZP_08387058.1| PPIC-type PPIASE domain protein [Sphingomonas sp. S17]
 gi|332015033|gb|EGI57089.1| PPIC-type PPIASE domain protein [Sphingomonas sp. S17]
          Length = 475

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 95/263 (36%), Gaps = 10/263 (3%)

Query: 44  TTINGEVITDGDISKRIALLKLQKI--------NGELEKIAVQELIVETLKKQEIEKSGI 95
             +N  V+T  D+ +R+AL                 L    +++LI ETL+ QE + + I
Sbjct: 85  AIVNDTVLTGTDLDQRMALAMALNNVTKLSPEDRDRLRMQILRQLIDETLQIQEAKSAEI 144

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
           T  +  ++  + + ++  G +    ++FL + G  +   ++ +  +  W   ++      
Sbjct: 145 TVTAPEIDQAYARFSQQFGKTPTQMTAFLRQVGSSERSMRRQIEGELAWNRYLRKRVEPF 204

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
               + E+ A + +++     E      +F   +   Q Q F   R   AE  + +    
Sbjct: 205 INVGDEEVNAIRARLEAAKGTEEYNLKEIFLSANEATQQQVFANARQIIAEIQKGQ-QPF 263

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICD 274
                 F+        G   ++  + L P+ Q+            P     G   + + D
Sbjct: 264 EYFARSFSEASTRAVNGDLGWVRAAQLPPELQSAAQSMQVGQVAGPIPIPGGFSILYLTD 323

Query: 275 KRDLGGEIALKAYLSAQNTPTKI 297
           KR +       + LS +    K 
Sbjct: 324 KRQVLTADPRDSRLSLKQLTIKF 346



 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 233 KAQYLLESDLH-PQFQNLLKKSQNNTTNPYVTQK-GVEYIAICDKRDL-GGEIALKAYLS 289
               +    L  P  + LLK      T P+ + + GV  + +CD+ +   G +     + 
Sbjct: 388 DNDQVTIRQLPAPLQEILLKMQIGQATPPFGSPEQGVRSLVLCDREEPRSGNLPTSDQIQ 447

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            Q    ++     + ++ LR +A+I Y
Sbjct: 448 NQVEQQRVNLRANQKMRDLRRDAVIEY 474


>gi|260576192|ref|ZP_05844185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter sp. SW2]
 gi|259021672|gb|EEW24975.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter sp. SW2]
          Length = 285

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/311 (10%), Positives = 83/311 (26%), Gaps = 51/311 (16%)

Query: 9   LSDFIKLL-TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK 67
           ++ F K   T          + +        +  +  T+NG  IT G +      L  Q 
Sbjct: 1   MAKFAKFWPTVALGAACAFGMALPVSAEDLTAETVVATVNGTNITLGHMIVLRDGLPAQY 60

Query: 68  ---INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
               +  L K  + +LI ++  +Q +  +    D+ ++                      
Sbjct: 61  SDLPDDVLFKGILDQLIQQSALEQSLGGTLTKRDTLSLENS------------------- 101

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
                             +    ++        +  ++   + +        EY    +L
Sbjct: 102 --------------RRGYLSGVALQAAVAGAVTDESLQAAYDAKYAHAEPTTEYHAAHIL 147

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
                         +++ K  +                +S     + G   +     +  
Sbjct: 148 -----------VDSEEKAKALKTQIDGGADFAELAIANSSDGSAANGGDLGWFGLGMMVK 196

Query: 245 QFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAE 303
            F++ +        + P  TQ G   + + + R           +  +      +     
Sbjct: 197 PFEDAVVALKPGEVSAPIQTQFGWHLVKLTETRVANA--PALDDVRDELAGEIEQAALTA 254

Query: 304 YVKKLRSNAII 314
           +++KL + A +
Sbjct: 255 HIEKLTAAATV 265


>gi|116626458|ref|YP_828614.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116229620|gb|ABJ88329.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 418

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/307 (14%), Positives = 104/307 (33%), Gaps = 20/307 (6%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIALL------------KLQKINGELEKIAV 77
             +  +  +   I   +NG++IT G++ K+   +            +LQ    E     +
Sbjct: 17  AAADNNVKVVEEIAAKVNGDIITRGELEKKRQEIEAEAKRQGLTGARLQDAVKEAHADVL 76

Query: 78  QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK-Q 136
            + I   L  Q+ +   I+ D++          +      + F  F+ +Q         Q
Sbjct: 77  SKEIDTLLLVQKGKDLNISVDADVTRRLAEIQVQQKISDPDKFQQFIREQTGMTFEDFKQ 136

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT---VREYLIRTVLFSIPDNKLQ 193
            +  + +   V+  + M      E E+     + K+       +  +  ++ S      +
Sbjct: 137 QMKNEMLTQRVIGQEVMRNITVPEAELQKYYDEHKSEFMRKEAQVFLSQIVISTEGKSPE 196

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNL-LK 251
                +K+ KD      +  K  +     +       + G    + +  +    + +  K
Sbjct: 197 QVAAAEKKAKDLVARANKGEKFSDLARDNSDDVETAKNGGYVGSMPKGMMDKAIEEIVFK 256

Query: 252 KSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
             +   ++P+   +G   + + D+ + G      +K  L  + T  K       Y+ +LR
Sbjct: 257 AKKGFVSDPFKRAQGFVILKVEDRFEAGQASFDEVKNELQDRLTQPKANAKVRTYLTQLR 316

Query: 310 SNAIIHY 316
            +A +  
Sbjct: 317 EDAFLEI 323


>gi|114762082|ref|ZP_01441550.1| PPIC-type PPIASE domain protein [Pelagibaca bermudensis HTCC2601]
 gi|114545106|gb|EAU48109.1| PPIC-type PPIASE domain protein [Roseovarius sp. HTCC2601]
          Length = 286

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/309 (11%), Positives = 80/309 (25%), Gaps = 54/309 (17%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMS----SRIRTTINGEVITDGDISKRIALLKLQKIN 69
           K LTT     +   + + +             +  T+NGE IT G +      L  Q   
Sbjct: 3   KTLTTLSAAALAVTMAMPAQAQDQAEEMELDTVVATVNGEDITLGHMLMVRTTLPEQYQQ 62

Query: 70  ---GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
                L    + +L+ +    Q+                                     
Sbjct: 63  LGDDVLWDGILDQLVRQAALAQDEN---------------------------------AV 89

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
           +               +  +VVK        +  ++           T +E+    +L  
Sbjct: 90  ETKRVTLSIDNERRALLAGEVVKAIAETSVSDEAVQAAYEADYTDAETGKEFNASHILVE 149

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
             ++       ++                     + ++     + G+  +     +   F
Sbjct: 150 TEEDAQALVEELE-----------GGADFAELAREKSTGPSGPNGGELGWFAAGMMVEPF 198

Query: 247 QNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYV 305
           Q           + P  TQ G   I + + R    E      +  +   +  ++   +Y+
Sbjct: 199 QEAVEMLEVGAVSEPVQTQFGWHVIKLNETR--AKEAPALDEVRGEIEMSLQQQAVEKYI 256

Query: 306 KKLRSNAII 314
            +  ++A +
Sbjct: 257 DETLASAEV 265


>gi|146337720|ref|YP_001202768.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. ORS278]
 gi|146190526|emb|CAL74525.1| putative Peptidylprolyl isomerase [Bradyrhizobium sp. ORS278]
          Length = 274

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 84/294 (28%), Gaps = 47/294 (15%)

Query: 26  CIVPIVSYKSWAMSSRIRTTINGEVITDGDI---SKRIALLKLQKINGELEKIAVQELIV 82
             + +   ++   ++ +   +NG  I   D+    + +     Q      ++  +  LI 
Sbjct: 1   MSLLVAPARAADDANPVLAKVNGAEIRKSDVALAEEELGPSLAQMDPATKDENVLSFLID 60

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
             L  +  E   +    +                                    +   + 
Sbjct: 61  MKLVSKAAEDKKVAESEDFKKRL------------------------------AFTRNRL 90

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           +   ++ ++         M+    +   +    +E   R +L    D     +  + K  
Sbjct: 91  LMDSLLASEGKAATTPDAMKKVYEEASKQIGGEQEVHARHILVETEDEAKAVKAELAK-- 148

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPY 261
                            +K +        G   +  +  + P+F N+         ++P 
Sbjct: 149 ---------GADFAELAKKKSKDPGASDGGDLGFFTKEQMVPEFANVAFSMEPGKISDPV 199

Query: 262 VTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            TQ G   I + +KR+          + +Q       K +A+YV KLR  A I 
Sbjct: 200 KTQFGWHIIKVEEKRNRKP--PEFEQVKSQIETYVTRKAQADYVGKLREAAKIE 251


>gi|158429505|pdb|2PV3|A Chain A, Crystallographic Structure Of Sura Fragment Lacking The
           Second Peptidyl-Prolyl Isomerase Domain Complexed With
           Peptide Nftlkfwdifrk
 gi|158429506|pdb|2PV3|B Chain B, Crystallographic Structure Of Sura Fragment Lacking The
           Second Peptidyl-Prolyl Isomerase Domain Complexed With
           Peptide Nftlkfwdifrk
          Length = 299

 Score =  108 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 87/265 (32%), Gaps = 6/265 (2%)

Query: 58  KRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
                 +    +  L    ++ LI++ +  Q  +K G+      ++      A+   ++ 
Sbjct: 32  NAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTL 91

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
           +   S L   G+  N ++  +  + I  +V  N+   +   L  E+ +  Q++ N     
Sbjct: 92  DQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDAS 151

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKA 234
             +      IP  +      V +    A     +              ++    ++ G+ 
Sbjct: 152 TELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQM 211

Query: 235 QYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL--KAYLSAQ 291
            +    +L   F        + +   P  +  G   + + D R     I+   K      
Sbjct: 212 GWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISAAQKDRAYRM 271

Query: 292 NTPTKIEKHEAEYVKKLRSNAIIHY 316
               K  +  A ++++ R++A +  
Sbjct: 272 LMNRKFSEEAASWMQEQRASAYVKI 296


>gi|170747170|ref|YP_001753430.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653692|gb|ACB22747.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 311

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 73/275 (26%), Gaps = 40/275 (14%)

Query: 42  IRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           +  ++NG+ IT GD++       L                                D   
Sbjct: 60  VVASVNGKPITQGDLAIAADDPALSLPG---------------------------VDEAQ 92

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
                V +  +  + A+   +              Y   + +  D ++ +          
Sbjct: 93  KKNLLVDYMVDLRVGAQAAEAAKIGDTPEFKRKLAYFRDKLLLDDYLEQEAKRAVTPEAE 152

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
               ++         E   R +L         +     K+I    +      K   +  K
Sbjct: 153 HAIYDQTVKLMKPEEEVHARHILV--------DNEAEAKKIAARIKGGEDFAKVAAEASK 204

Query: 222 FASKIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
                     G   +  +  + P F N          ++P  TQ G   I + +KR    
Sbjct: 205 --DPGSKAEGGDLGWFTKERMVPDFANAAFAMKAGQVSDPIKTQFGWHVIKVEEKRTKP- 261

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                  L  Q     I K + + + KLRS A I 
Sbjct: 262 -QPTFDELKEQIDQHLIRKAQQDMILKLRSEAKIE 295


>gi|319796618|ref|YP_004158258.1| sura domain [Variovorax paradoxus EPS]
 gi|315599081|gb|ADU40147.1| SurA domain [Variovorax paradoxus EPS]
          Length = 469

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 95/302 (31%), Gaps = 18/302 (5%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN------GELEKIAVQELI 81
               +      +  I   +N E IT+ D+  R+  L  +  +      GEL ++ ++ LI
Sbjct: 51  ASPSAAPVQRAAEFIVALVNSEPITNTDVQSRVTRLIKENPDAERVPRGELTRLVLERLI 110

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
           VE  + Q  +++GI  D   ++      AR   +S  +    +  +GI    F++ L  Q
Sbjct: 111 VERAQLQLAKENGIKVDDVAIDQAEQTVARQNEISLVELRRRVAAEGIALADFRKDLRDQ 170

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL------IRTVLFSIPDNKLQNQ 195
            +   +   +   K    + E     +  +N   +          + ++    +      
Sbjct: 171 LLLTRLRDREVESKVKISDSEADEYLRDQRNSNTKNAALQNLNLAQVLVVLPENATDAQV 230

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQ 254
              QK+ +   E           + + +      + G           P F   +   + 
Sbjct: 231 AAAQKKAQGLAERARAGEDFEKLVRENSDSPDRANGGAIGMRSADRYPPLFVDAVQSTAV 290

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEI--ALKAYLSAQNT---PTKIEKHEAEYVKKLR 309
           N    P  +  G   + +  K  +G       +  +        P +        + + +
Sbjct: 291 NGIAGPVRSSAGFHVLKVLAKAQIGSLDATVTQTQVRHILLLNDPKRTTAQAVAQLAEFK 350

Query: 310 SN 311
             
Sbjct: 351 RR 352



 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 53/167 (31%), Gaps = 2/167 (1%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                G   +++ A  Q               +  + D K      V +  +     +  
Sbjct: 297 VRSSAGFHVLKVLAKAQIGSLDATVTQTQVRHILLLNDPKRTTAQAVAQLAEFKRRVQAG 356

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                      +        G   +       P+F+  + + S    ++P V++ GV  I
Sbjct: 357 TADFAGLARDNSQDASAKEGGDLGWSRPGQFVPEFEEAMDRLSPGQISDPVVSRFGVHLI 416

Query: 271 AICDKRDLGGEIALKAY-LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            +  +RD     + +           +IE+    +V+++R+ A + Y
Sbjct: 417 QVVGRRDSKLTQSEQREAARNVLREQRIEEAFTTWVQEVRARAYVEY 463


>gi|117925616|ref|YP_866233.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Magnetococcus sp.
           MC-1]
 gi|117609372|gb|ABK44827.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Magnetococcus sp.
           MC-1]
          Length = 442

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/329 (11%), Positives = 108/329 (32%), Gaps = 29/329 (8%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWA--MSSRIRTTINGEVITDGDISKRIA-------LLK 64
           K    + +++   ++  ++    A      I   + GE+I + +I+ ++           
Sbjct: 5   KRWVRWVIMVSMILLSTLTKPVEAGVPLDGIAAVVEGEIILESEIADQLRAQVMKFSRAG 64

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
            Q     L +  +   ++  L+ Q+ ++ GI      V+    + A++  +S E F   L
Sbjct: 65  EQVDVALLRRRVLDGAVMRVLRAQKAKQLGINLKDADVDGAVQRMAQHNNVSVEQFKMML 124

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI------TVREY 178
            ++G+G + +   +  Q     +++   +      + E+    +  +             
Sbjct: 125 AREGVGFDSYLSSIRDQLYVQQIIRQVILPSVRVSDEEVQDLYKATRQDPEKIGGEPELR 184

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
           + + +L    +  +     +  + K                 + +     ++ G   +  
Sbjct: 185 IKQILLSVPENALIHRVREISDKAKSLVSQLRGGASFARLASEHSDDPSGLNGGDMGWFK 244

Query: 239 ESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK--------AYLS 289
             +L  Q ++ + K      + P  T +G     + ++R        +         ++ 
Sbjct: 245 RGELQAQIEDLVFKLEDGAISEPVRTTQGFHIFMVAERRVQQHFGQSEGDHVKVYARHIL 304

Query: 290 AQN---TPTKIEKHEAEYVKKLRSNAIIH 315
            +    +  +        ++KLR    I 
Sbjct: 305 LKVAPNSDAQTSAQVRNQLEKLRRE--IE 331



 Score = 65.5 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 56/161 (34%), Gaps = 4/161 (2%)

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
           E  +  +  + +   V+ Y    +L   P++  Q    V+ +++                
Sbjct: 281 ERRVQQHFGQSEGDHVKVYARHILLKVAPNSDAQTSAQVRNQLEKLRREIEAGASFAEVA 340

Query: 220 EKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRD 277
           ++++         G         + P F+++         + P  +  G   I +  + +
Sbjct: 341 KRYSQDDGSAQKGGDLGGFGRGVMVPSFEDVAFFLKPGVVSEPVRSPFGWHLIEVTKREE 400

Query: 278 LGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
              +     K  L+ +    KI+    ++++ LR ++ + Y
Sbjct: 401 QKADTMDEAKKELTVRLREAKIKARYTQWLRDLRLSSFVDY 441


>gi|126736394|ref|ZP_01752136.1| PPIC-type PPIASE domain [Roseobacter sp. CCS2]
 gi|126714215|gb|EBA11084.1| PPIC-type PPIASE domain [Roseobacter sp. CCS2]
          Length = 383

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 98/237 (41%), Gaps = 4/237 (1%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             T+N  VIT  ++S+RI LL++ +  G+L + A   LI + LK+QE+ + G++   + +
Sbjct: 9   VITVNDRVITQYELSQRIRLLEVFRTPGDLNEAARNALIEDRLKQQELARFGVSVPEDAL 68

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                + A    +S   F+  L + GI  +  + ++ +  +W D +++ F  +    + +
Sbjct: 69  QQAMEEFAGRANMSLPQFTRVLAQDGIDISTLRDFVEVGILWRDFIRSRFNRQITITDAD 128

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +     +  N T +  ++   +   P      +     +  D         +      + 
Sbjct: 129 VERAIVQQGNTTSQLEVLLNEIIIAPPPG---REAAAAQAADQISRMRSFAEFEAAARQV 185

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++     + G+  +   S+  PQ ++++    +   T+P      +    +   R+ 
Sbjct: 186 SALPSRENGGRLDWTPVSNFPPQIRSIILDLDRGEVTDPIEIPNAIALFQLRGTREA 242



 Score = 46.2 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/267 (8%), Positives = 75/267 (28%), Gaps = 12/267 (4%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY-FFVQH 109
           ITD D+ + I     Q       ++ + E+I+     +E   +      + +      + 
Sbjct: 124 ITDADVERAI---VQQGNTTSQLEVLLNEIIIAPPPGREAAAAQAADQISRMRSFAEFEA 180

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
           A     +     +         ++F   +    +   + + +                + 
Sbjct: 181 AARQVSALPSRENGGRLDWTPVSNFPPQIRSIILD--LDRGEVTDPIEIPNAIALFQLRG 238

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
            +   +      ++ ++              +      +       C+ L   A      
Sbjct: 239 TREAVLPAAAPLSIEYAAYYIPGGRTDAGLAQ----AAAVRDQVDTCDDLYGVARNQPAE 294

Query: 230 SIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKG--VEYIAICDKRDLGGEIALKAY 287
           ++ +      +  +     L +      +       G  + ++ +C +   G     +  
Sbjct: 295 TLDRLTEAPSAISNDVALELARLDPGEVSYNLTRNNGETLVFLMLCARNSAGAGTTDRNA 354

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAII 314
           +  Q    ++       ++ LR++A+I
Sbjct: 355 IRNQIRSQRLNALADALLEDLRASAVI 381


>gi|297181233|gb|ADI17427.1| parvulin-like peptidyl-prolyl isomerase [uncultured
           Rhodospirillales bacterium HF0070_31K06]
          Length = 293

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/317 (11%), Positives = 84/317 (26%), Gaps = 53/317 (16%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSR-----IRTTINGEVITDGDISKRIALLKL 65
             ++ L    V     I+      + ++  R     +  T+NGE I  G + +    L  
Sbjct: 1   MLLRALPAVIVASAAFILSTGHLAAQSVRDRLAKDVVVATVNGEQILSGHLLQAFQNLPR 60

Query: 66  QKINGELEK---IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
           +     L       +++LI   L      ++ ++ D+                       
Sbjct: 61  KHRQRGLRAVYGELLEQLIENRLLTYHGRENNLSGDAEVK-------------------- 100

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
                        +    Q +    +         + ++++   +      +  E   R 
Sbjct: 101 ----------ALVKEAEDQIVARVYLNRLISQSITDSKLKVRYEELVKNTPSHEEVRARH 150

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
           +L              ++  ++  +            +  +        G   Y   SD+
Sbjct: 151 IL-----------VSTEQEAQEVLKLLAGGQPFEEVAKTHSKDPAASRGGDLGYFRSSDM 199

Query: 243 HPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH 300
              F           T+  P  T+ G   I + D+R           L  Q       + 
Sbjct: 200 VKPFSAAAFAMKPGETSASPVKTEFGWHVIKVEDRRQSSV--PPFDRLRPQIARDLGRRI 257

Query: 301 EAEYVKKLRSNAIIHYY 317
             E +   R+ + I  +
Sbjct: 258 AIEILNAARNGSEIQRF 274


>gi|154247041|ref|YP_001417999.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xanthobacter
           autotrophicus Py2]
 gi|154161126|gb|ABS68342.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xanthobacter
           autotrophicus Py2]
          Length = 338

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 81/281 (28%), Gaps = 49/281 (17%)

Query: 40  SRIRTTINGEVITDGDISKRIAL----LKLQKINGELEKIAVQELIVETLKKQEIEKSGI 95
             +  T+NG  I   D++  +      L  Q    + E+  +  L   TL  +  E   +
Sbjct: 75  DTVVATVNGTPIRQSDVTIALEDIGAGLPPQLQGAQREEYVLSFLTDMTLLAKAAEAQKL 134

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
               +                                    Y   +++   ++  +    
Sbjct: 135 DQSPDFQQRI------------------------------AYARTKALMETLMTQEAKKA 164

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
                     ++         E   R +L              + + K+  +        
Sbjct: 165 VSEEAKHKTYDEFVKSAPAEAEVRARHIL-----------VDDEAKAKEIAKKAKAGEDF 213

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICD 274
               + ++        G   Y  +  + P+F +   K  +   ++P  +Q G   I + D
Sbjct: 214 AKLAKDYSKD-SAEDGGDLGYFTKDQMVPEFAEAAFKLDKGQVSDPVKSQFGWHVIKVED 272

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           KR           +S Q     + K +A+ V KLR++A I 
Sbjct: 273 KRQKPV--PTYDQVSDQVEQYLVRKAQADLVTKLRTDAKIE 311


>gi|304394142|ref|ZP_07376065.1| peptidylprolyl isomerase PrsA1 [Ahrensia sp. R2A130]
 gi|303293582|gb|EFL87959.1| peptidylprolyl isomerase PrsA1 [Ahrensia sp. R2A130]
          Length = 277

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/297 (11%), Positives = 80/297 (26%), Gaps = 48/297 (16%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK---LQKIN 69
           +  LT    +    +  +V+  + A   +I   +  E IT  ++ + +A +     Q   
Sbjct: 1   MNKLTFRSAVAASTLALLVALPASAQEDKIVAKVGSEEITQSELDQAMADMAQQFAQFPE 60

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
            + +  A+  LI   +      K GI  D   +                           
Sbjct: 61  PQRKARALDALIDIEVFAALARKEGIDKDPKLLAR------------------------- 95

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                 + L  +++              + +++   +K+       +E   R +L    +
Sbjct: 96  -----MELLNKRALHNGYFTQKVQAGITDEQLQARYDKEIGSAPRQKEVKARHILVKTEE 150

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                   ++                    +  ++       G   +  +  + P+F+  
Sbjct: 151 EAKAIIEELK-----------SGADFVELAKTKSTGPSGPQGGDLGFFKKGQMVPEFEKA 199

Query: 250 LKK-SQNNTTN-PYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEA 302
             +      T  P  TQ G   I + + RD         K  L          +   
Sbjct: 200 AFELEAGKVTETPVKTQFGFHIIKVDETRDTPLPTFEQSKEQLRQLVLTEAYAEAIK 256


>gi|87311619|ref|ZP_01093736.1| probable peptidyl-prolyl cis-trans isomerase [Blastopirellula
           marina DSM 3645]
 gi|87285622|gb|EAQ77539.1| probable peptidyl-prolyl cis-trans isomerase [Blastopirellula
           marina DSM 3645]
          Length = 558

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/307 (11%), Positives = 88/307 (28%), Gaps = 33/307 (10%)

Query: 41  RIRTTINGEVITDGDI--------SKRIALLKLQKING-------ELEKIAVQEL----I 81
           RI   + G+ I  GDI          RIA L  ++          E  ++A++EL    I
Sbjct: 230 RIIALVGGQPILAGDILGPVNQALETRIAELSPEQREQVTEEVLEEQRQMALRELLPGLI 289

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS----------FLDKQGIGD 131
              +   +  ++      + +            + ++               L ++G   
Sbjct: 290 DTKMIYLDFIRTIPPDKLSEMQGHLDSQYAEYQMQSDLDQYEVHTPAELDIVLRREGSSL 349

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
              K+    Q +    +K            ++                 +     +  +K
Sbjct: 350 EKKKRLFLEQIVASQQLKTHVKPNTEVSHQQMLDYYHDHAADYASPARAKWEQLMVRFDK 409

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNL 249
             ++   ++ I +     LR        +K +        G   +   + L  +     +
Sbjct: 410 FSSKAEAEQAIAEMGNQVLRGAPLDAVAKKESQCFRASEGGLYDWTTRNSLKNETIDAAI 469

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
                N  +    + +G   + + ++ +         +  +  +    +  + + +YV  
Sbjct: 470 FSLPTNRLSQIIESPEGYHIVRVLERDEASIKPFRDAQLEIKEKIRRERANQAQRDYVAD 529

Query: 308 LRSNAII 314
           +R    I
Sbjct: 530 VRKRTQI 536


>gi|260596477|ref|YP_003209048.1| peptidyl-prolyl cis-trans isomerase SurA [Cronobacter turicensis
           z3032]
 gi|260215654|emb|CBA27953.1| Chaperone surA [Cronobacter turicensis z3032]
          Length = 440

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 106/311 (34%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +L+   +V   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 19  LLLGITLVVNTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNANQAGQQLPDDSTL 78

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+    + ++      A+   ++ +   S L   G+  N
Sbjct: 79  RHQILERLIMDQIMLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYN 138

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + I  +V  N+   +   L  E+    +++ N       +      IP  + 
Sbjct: 139 TYRAQIRKEMIISEVRNNEVRRRVTILPQEVETLAEQVGNQNDASTELNLSHILIPLPEN 198

Query: 193 QNQGFVQKRIKD---AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                V +         +              +++    +  G+  +    +L   F   
Sbjct: 199 PTADQVSEAETQARSIIDQARNGGDFGKLAITYSADQQALKGGQMGWGRIQELPSVFAQA 258

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   I + D R     +        ++  + +P   ++   + 
Sbjct: 259 LSTAKKGDVIGPIRSGVGFHIIKVNDLRGQSQTVSVTEVHARHILLKPSPIMTDQQARQK 318

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 319 LEEI--AADIK 327



 Score = 82.8 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 84/273 (30%), Gaps = 16/273 (5%)

Query: 58  KRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
           + +  L  Q  N       +  L    +   E   +    ++ T     +  ARN G   
Sbjct: 167 QEVETLAEQVGNQNDASTELN-LSHILIPLPENPTADQVSEAETQARSIIDQARNGGDFG 225

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------FMLKYGNLEMEIPAN 166
           +   ++   Q         +  IQ +     +                  G   +++   
Sbjct: 226 KLAITYSADQQALKGGQMGWGRIQELPSVFAQALSTAKKGDVIGPIRSGVGFHIIKVNDL 285

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
           + + + ++V E   R +L         +Q   QK  + A + +           +F+   
Sbjct: 286 RGQSQTVSVTEVHARHILLKPSPIMT-DQQARQKLEEIAADIKSGKTTFAQAAREFSQDP 344

Query: 227 -HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLG-GEIA 283
                 G   +       P F++  +  S+   + P  +  G   I + D R     + A
Sbjct: 345 GSANQGGDLGWAAADIYDPAFRDALMNLSKGQMSTPVHSSFGWHLIELLDTRKSDRTDAA 404

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            K          K  +  A ++++ R++A +  
Sbjct: 405 QKDRAYRMLFNRKFSEEAATWMQEQRASAYVKI 437


>gi|159046106|ref|YP_001534900.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dinoroseobacter
           shibae DFL 12]
 gi|157913866|gb|ABV95299.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dinoroseobacter
           shibae DFL 12]
          Length = 280

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/314 (10%), Positives = 76/314 (24%), Gaps = 58/314 (18%)

Query: 13  IKLLTTYFV-LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN-- 69
           + ++      L +   +          +  +  T+ GE IT G +    + L  Q     
Sbjct: 1   MNIIRKPLARLALGLTLLSPVAVQAQDADTVLATVGGEEITLGHLIAVASSLPTQFQQLA 60

Query: 70  -GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
              L    ++++I +    Q +  S                                   
Sbjct: 61  DDRLYSGLLEQMIRQVALAQSMGDSLSK-------------------------------- 88

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                  +      +   ++            ++   + +       +E+    +L    
Sbjct: 89  -ELELSLESQRWALMANSIIDGAIEAAVTEESVQALYDAEFGNIEPEKEFNASHIL---- 143

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
                     ++  +                   +      + G+  +     +   F+ 
Sbjct: 144 -------VETEEEAQALVTELEGGADFAELARARSVGPSGPNGGELGWFGPGMMVAPFEM 196

Query: 249 L-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
             ++      + P  TQ G   I + D RD          +  +      E+   E V  
Sbjct: 197 AVIRMEPGTVSEPVETQFGWHVIRLNDIRDSAA--QPLEEVRGRLEERLSEEAAQEVVDS 254

Query: 308 L-------RSNAII 314
           L       RS A I
Sbjct: 255 LVAATEITRSEAEI 268


>gi|296282383|ref|ZP_06860381.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Citromicrobium
           bathyomarinum JL354]
          Length = 492

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 88/285 (30%), Gaps = 18/285 (6%)

Query: 44  TTINGEVITDGDISKRIALLKLQK--------INGELEKIAVQELIVETLKKQEIEKSGI 95
             +NG VIT  DI  R+AL+                L    ++ LI ETL+ Q      +
Sbjct: 102 AKVNGTVITGTDIDHRVALVLAASERKEIPADQLQALRMQVLRNLIDETLQIQAAAAQDM 161

Query: 96  TFDSNTVNYFFVQHARNT-GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
              S  VN  +   A+   G + +    FL   G      K+ +  +  W  +++ +   
Sbjct: 162 EVSSEEVNQRYAILAQQNFGSNPQQMDKFLIAAGSSPATLKRQIQGEIAWQMLLRRNVAP 221

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
                  E+    +++K    +E      ++     +               +       
Sbjct: 222 FINVSAEEVNDTIERLKTSRGQEEYRLAEIYLSATPETAATVEANAEQIM--DQIRAGGS 279

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAIC 273
                 +F+        G   ++    L  Q  +   K +      P     G   + + 
Sbjct: 280 FQAYARQFSESTTASVGGDLGFVRLGTLPGQMAEVATKMTPGQLVGPVPIPGGYVIMLLL 339

Query: 274 DKRDLGGEIALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           DKR +       A L   Q   T  +    +     R+NA +  +
Sbjct: 340 DKRQVLTADPRDAVLSLKQIAITFPQGTSQD-----RANARVEEF 379



 Score = 56.6 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 233 KAQYLLESDLHPQFQNL-LKKSQNNTTNPYVT-QKGVEYIAICDKRDLGGE-IALKAYLS 289
               +   DL PQ Q   +      TT P+ + Q GV  + +C + D           + 
Sbjct: 405 DNDSITVRDLPPQLQASLMDLQVGQTTPPFGSMQDGVRVLLLCGRDDPEVNGEPDFDQIM 464

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            +    +I K    +++ LR +AII Y
Sbjct: 465 DRIEEERISKRAQRFLRDLRDDAIIEY 491


>gi|182414803|ref|YP_001819869.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Opitutus terrae
           PB90-1]
 gi|177842017|gb|ACB76269.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Opitutus terrae
           PB90-1]
          Length = 328

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 99/296 (33%), Gaps = 17/296 (5%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKING------------ELEKIAVQELIVETLK 86
           ++ I   +  +VIT  D+ + IA L  Q                +L+   +Q LI   L 
Sbjct: 33  ANGIAAIVEDKVITVDDVRREIAPLIAQLQREARNEREFNEKLEQLQDDVIQSLIDRVLI 92

Query: 87  KQEIEKSG--ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
            +E  K       DS   N      +         F ++L  +G     +++ +    I+
Sbjct: 93  VKEFRKDEKKHIPDSFIDNRLADILSEQFDNDRSKFLAYLHSRGTTLREYRREVEEDIIY 152

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
             + +     +     + I     + K+   +E  +   L        +    ++ +   
Sbjct: 153 QYMRQEQRKSQSIVSPVRIETFYNENKDRFYQEDGVHLRLIQFSRANGETDEDLRAKANL 212

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVT 263
                    K  +   +++        G   +   SDL P+F + L    +   ++P + 
Sbjct: 213 VMARIKAGEKFEDLAREYSQDSRRAKGGDWGWQKRSDLKPEFSEPLFSLKKGEVSDPIIL 272

Query: 264 QKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            +G   +   D++   +     ++  +            +  ++++LR N  + +Y
Sbjct: 273 PEGCFILFAEDRKYAGIQPIDEVRDEIERVLVQQMSRNSQEHWLERLRRNGYVKHY 328


>gi|296532230|ref|ZP_06894978.1| peptidyl-prolyl cis-trans isomerase [Roseomonas cervicalis ATCC
           49957]
 gi|296267447|gb|EFH13324.1| peptidyl-prolyl cis-trans isomerase [Roseomonas cervicalis ATCC
           49957]
          Length = 401

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/266 (17%), Positives = 91/266 (34%), Gaps = 9/266 (3%)

Query: 33  YKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN-------GELEKIAVQELIVETL 85
             + A  + I   +NG+V+T G+++ R  L  L             L     + L+ E L
Sbjct: 1   GAAPAQVNSIVAVVNGDVVTAGEVAGRARLFALNAGMGPAPDVVQRLRPQVTRLLVDERL 60

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
           + QE+++ GI      V     +     GL        L   GI        +  Q  W 
Sbjct: 61  RMQEVQRRGIPVPDEDVAEAVQEIESRNGLPRGGLVGQLRAAGIPPRALFDQIRNQIGWS 120

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
            +V+     +      E+       K  T +   + + +F   D+       V++ ++D 
Sbjct: 121 RLVRAQLGQQAQISPAEVAEFVAAHKARTGQPEYLVSEIFIPVDDPGAEPE-VRRFVEDV 179

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQ 264
                R         +F+     +  G   ++   +  P   ++  +       NP    
Sbjct: 180 VGQLRRGVPFPAAATQFSQSQTALQGGDMGWVRGEEFDPGVASILERMPPGAIANPQRVP 239

Query: 265 KGVEYIAICDKRDLGGEIALKAYLSA 290
            G + +A+  KR+ G ++A    L  
Sbjct: 240 GGFQIVALRQKRETGRDLATMVTLRQ 265



 Score = 39.3 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 34/144 (23%), Gaps = 2/144 (1%)

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN-KLEKFASKIHDVS 230
                   +R                 Q+         L+       +     S      
Sbjct: 255 RDLATMVTLRQAFLGFTSALDPQNPTQQQIQALERARALQGQNCQAVEAAARGSSRPADP 314

Query: 231 IGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA 290
            G    L +         +     N  + P VT  G+  +A+C +               
Sbjct: 315 GGPLP-LEQMQPPQLRSIVAGLQVNRASQPLVTPDGILVLAVCSRETRNLAELTPEQARV 373

Query: 291 QNTPTKIEKHEAEYVKKLRSNAII 314
           Q    +IE    +  + LR  A I
Sbjct: 374 QILRDRIELASRQLQRDLRRRAQI 397


>gi|295111179|emb|CBL27929.1| Parvulin-like peptidyl-prolyl isomerase [Synergistetes bacterium
           SGP1]
          Length = 303

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 83/290 (28%), Gaps = 44/290 (15%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQ----KINGELEKIAVQELIVETLKKQE 89
                 +++   + G  IT+ D++  +  +  Q      N +  ++ + E++   L   E
Sbjct: 31  PKPTEENQVLARVEGREITEADVNAVLQSMGPQGMMMYGNPQGRQLILDEIVSMYLFSLE 90

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
            EK  +  + + +                               F   +  QS+    ++
Sbjct: 91  AEKEKLDGEQDFI------------------------------DFMARVRTQSLAQRAMR 120

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
           N         E E      + K+   +   I      I D+        +      +   
Sbjct: 121 NAV-KDVKATEEEAQKFYDEHKDQFTQPERIHARHILISDDATSADTIAR-----VQADL 174

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGV 267
                   + +K +        G      +  + P+F +     K   + + P  +  G 
Sbjct: 175 KAGASFDEEAKKLSLCPSAPQGGDLGEFTKEQMVPEFSDAAFALKEPGDVSEPVKSPFGW 234

Query: 268 EYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             I +  +          +K  +    T  + ++     V++L+    + 
Sbjct: 235 HIIRLEGRTPAQLIPFDDVKDQILQDLTGQQQQERIKAKVEELKKAYKVE 284


>gi|325981517|ref|YP_004293919.1| SurA domain [Nitrosomonas sp. AL212]
 gi|325531036|gb|ADZ25757.1| SurA domain [Nitrosomonas sp. AL212]
          Length = 441

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 106/299 (35%), Gaps = 17/299 (5%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--------ELEKIAVQELI 81
           +         + I   +N +VIT  ++ + I     +             LE+  ++ +I
Sbjct: 27  LAFVPEAKPINHIVAVVNEDVITRHELDEAIKTAISRMQQQGMQIPDRHILEEQVLESVI 86

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
            + ++ Q  ++ G++     ++    + A +  L+  +F + L+  GI  N F++ +  +
Sbjct: 87  TKRIQIQHAQEVGLSVAETELDETINRIAEDNQLTLPEFHTVLENDGISYNKFREEIREE 146

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
            I   + + +   +    E E+    Q  +   V +   R     I   +      +Q+R
Sbjct: 147 MIIARLKEREVKHQVNVTEGEVDNFLQTQEASAVGDDEYRLAHIMILVPENMTADQIQQR 206

Query: 202 IKDAEESRLRLPKDCNKL---EKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNT 257
            + AE +  RL +         +F+      + G  ++   S + P F  +L+     + 
Sbjct: 207 AERAEMALTRLREGAEFSQIVSEFSDAADAKNGGIIEWRPISQMGPAFAQILEALQPGDI 266

Query: 258 TNPYVTQKGVEYIAICDKRDLGG-----EIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           T+   +  G     +  +R         +     ++  +      E      +  L+  
Sbjct: 267 TSIVQSPNGFHIFKLLGRRAQETPTVIIDQTHARHILIKINELTSENDGKLKILALKDR 325



 Score = 91.7 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/274 (9%), Positives = 86/274 (31%), Gaps = 9/274 (3%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAV------QELIVETLKKQEIEKSGITFDSNTVNY 104
           +T+G++   +   +   +  +  ++A       + +  + ++++                
Sbjct: 163 VTEGEVDNFLQTQEASAVGDDEYRLAHIMILVPENMTADQIQQRAERAEMALTRLREGAE 222

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
           F    +  +  +       ++ + I          ++++ P  + +      G    ++ 
Sbjct: 223 FSQIVSEFSDAADAKNGGIIEWRPISQMGPAFAQILEALQPGDITSIVQSPNGFHIFKLL 282

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
             + +     + +      +    +          K +   ++   R          ++ 
Sbjct: 283 GRRAQETPTVIIDQTHARHILIKINELTSENDGKLKILAL-KDRLDRGESFEEVARLYSE 341

Query: 225 KIHDVSIGKAQYLLESDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAICDKRDLGGEIA 283
                S G   +L   D  P F+ ++        ++P  +Q G   I + ++R     + 
Sbjct: 342 DASASSGGDLGWLSPGDTVPDFERVMNALLPGEISDPVRSQFGWHLIQVMERRTQDISLD 401

Query: 284 LKAY-LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            +           K +    +++++LR  A I Y
Sbjct: 402 RRRQTARQAIRTRKADVVIQDWLQQLRDQAYIEY 435


>gi|42521666|ref|NP_967046.1| survival protein SurA precursor [Bdellovibrio bacteriovorus HD100]
 gi|39574196|emb|CAE77700.1| survival protein SurA precursor [Bdellovibrio bacteriovorus HD100]
          Length = 307

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/305 (12%), Positives = 99/305 (32%), Gaps = 16/305 (5%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE-------------LEK 74
           + + +     +  +    +N E++ + D    +  +  Q +  E               K
Sbjct: 1   MLVATPSHAEIVEKTVAIVNSELVLESDFKDLVKRIPKQGMVDESLLFDKPATSLIGNRK 60

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             +  LI E + + EI++  +   ++ V     + AR   +S  + +  + +QG+  + +
Sbjct: 61  AQLDYLINEKILQSEIKRLNLAVTNDRVESELKEMARKNQVSEAELAKVIQQQGVSMDDY 120

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
           +++L        ++  + + K    + +      K            +V     + K   
Sbjct: 121 RRFLKDSIEKRSLMDAEIISKLRISDEDALNEYLKTNPNNRPSIDEFSVSHIFFNPKKGG 180

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD-LHPQFQNLLKKS 253
                KR +             N  ++F+   +  + G        + L    + +    
Sbjct: 181 AEASIKRAETVLGKLRSGENFENLAQQFSEDPNFSTGGALGTFKSGEFLPEIEEAISSLK 240

Query: 254 QNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            N TT    ++ G   + +  K+          K  + AQ      ++    +++  R  
Sbjct: 241 VNETTPIVKSRMGFHIVKLTGKKLTTDPKFERAKDKIKAQLLENSFKRQLKNWLQTKRDE 300

Query: 312 AIIHY 316
           + I  
Sbjct: 301 SFIRI 305


>gi|328542082|ref|YP_004302191.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [polymorphum gilvum SL003B-26A1]
 gi|326411832|gb|ADZ68895.1| Peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 287

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/312 (10%), Positives = 78/312 (25%), Gaps = 49/312 (15%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK-- 67
           S   + L +  V      + + + ++      +   +    IT+ DI+     L  +   
Sbjct: 4   SILRRPLRSALVAATALTLGVSALQAAEPGD-VVAKVGDAEITEADIAFAAQDLGQELRR 62

Query: 68  -INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
               +   I +  L+   L       +GI  + +                          
Sbjct: 63  FPPAQWRTILIDVLVDMKLLAGAARAAGIDKEPDFARQV--------------------- 101

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
                     +L +Q++    +  +        E++   + +        E   R +L  
Sbjct: 102 ---------AFLEMQALRNAYIAREIDAGITEAELKAAYDTEFAGFEGDEEISARHIL-- 150

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP-Q 245
                       +    +  +               +S       G   Y     + P  
Sbjct: 151 ---------VASKDEAAELIKKLDEGADFAELATAHSSDGSAAGGGDLGYFTRGQMVPEF 201

Query: 246 FQNLLKKSQNNTT-NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                  +    +  P  +Q G   I + DKR           + A      I     + 
Sbjct: 202 EAAAFALAAGEHSKEPVESQFGWHVIKVEDKRQQAA--PSFEEVEAGLRQKLIRDIYTKR 259

Query: 305 VKKLRSNAIIHY 316
           + +L++   +  
Sbjct: 260 IGELKAETPVEI 271


>gi|319784426|ref|YP_004143902.1| SurA domain [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317170314|gb|ADV13852.1| SurA domain [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 309

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 64/302 (21%), Positives = 123/302 (40%), Gaps = 11/302 (3%)

Query: 19  YFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQ 78
           + +L+    V I      A +S I+  +N   +T GDI+ R A LKLQ+  G+    A Q
Sbjct: 10  FALLVAATSVSITVMAPPAFASEIKYVVNDIPVTTGDIAHRAAFLKLQRKKGD----AGQ 65

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
           E+I +TL+  E ++ GI      V+  + + A +  +        ++K G+  +HFK+++
Sbjct: 66  EMIDQTLRMAEAKRLGIRISDAQVDAAYQRFASSNKMQLSQLDGVMEKSGVTKSHFKEFI 125

Query: 139 AIQSIWPDVVKNDFML---KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             Q  W   +   +          E ++     +                       +  
Sbjct: 126 RAQMAWNQALSARYRSGDGTGAVSEQDLVRKMLEKGGAKPSATEYMLQQVIFVVPAAERS 185

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQ 254
             + KR ++A+  R R         +FA  + DV++     +L   L P + + +     
Sbjct: 186 ATLGKRKREADAMRARFNGCNTT-REFAKGLIDVTVRDLGRVLAPQLPPDWAEQIKATKV 244

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNT--PTKIEKHEAEYVKKLRSNA 312
              T    T++GVE+I IC  R++  +   +    A+ +      +    +YV +L++ A
Sbjct: 245 GGATVTRETERGVEFIGICSSREVSDDKVAQMAFQAEGSGGDKDADALSKKYVDELKAKA 304

Query: 313 II 314
            I
Sbjct: 305 RI 306


>gi|182677646|ref|YP_001831792.1| hypothetical protein Bind_0653 [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182633529|gb|ACB94303.1| conserved hypothetical protein [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 306

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/286 (19%), Positives = 117/286 (40%), Gaps = 4/286 (1%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
           +V   +   +  I  +ING+ IT+ D+ +R+ +L++ +      + A++ L  + L+  E
Sbjct: 21  VVVGSTDVQAQTIIASINGDPITNIDVDERMKMLRVLRKPAT-REAAMESLYTDRLETHE 79

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
             + G+      +    V+ A+   +  E   + L   G+  +HFK +      +  +V 
Sbjct: 80  AARYGVKPKDADIGQEIVRVAQEMKVQPEALIAALQNAGVSPDHFKAHFGADLAFGALVG 139

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
                     E E+     +                            +  R ++AE+ R
Sbjct: 140 A-LNKGVEASETEVRKELARQGGKAAAGTEYTLRQVIFSLPNNVAPAAINARGQEAEQLR 198

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVE 268
            R        EK    ++DV+I        +++    +NLL K+   + T P  +  G+E
Sbjct: 199 QRFADC-ESGEKMVFALNDVTIRDPIRRTSTEISEGLRNLLDKTPVGHLTPPQRSSAGLE 257

Query: 269 YIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            IA+C K     + AL+  +S +   T++    A+ +K++R +A+I
Sbjct: 258 MIAVCRKGAALDDTALRQQISQKILATRLSADRAKRLKEMRDHAVI 303


>gi|310657790|ref|YP_003935511.1| foldase lipoprotein [Clostridium sticklandii DSM 519]
 gi|308824568|emb|CBH20606.1| putative foldase lipoprotein (Late stage protein export
           lipoprotein) precursor [Clostridium sticklandii]
          Length = 354

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/325 (13%), Positives = 104/325 (32%), Gaps = 31/325 (9%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI-------- 68
               ++    I  + +  + A ++     +N   I+  D  K +A++K Q          
Sbjct: 4   LLSLIMSSLMIFSLAACSNTASANEWAAKVNDVEISYSDYEKNLAIIKKQIEATVGADIW 63

Query: 69  ----------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
                     N  L+   +++LI + L   E +K  IT D++     F Q         +
Sbjct: 64  TQDSGQGKTYNEILKDQVLEKLIEDQLILAEAKKENITVDADEFEKEFTQFKEQVKSLPD 123

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
             +   ++    +   KQ      ++    K  FM K    E ++       +       
Sbjct: 124 YETFLKEEGITDEFLKKQLETDTIVFE--YKEKFMEKNTPSEEDLKKYYDDNQENYNVNE 181

Query: 179 LIRTVLFSIPDN------KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSI 231
           +  + +     +             ++K  +                ++++      V+ 
Sbjct: 182 VKASHILLKTVDENFVPLPEDKIAEIKKEAEAVLAKVNSGEDFAVLAKEYSQDEASAVNG 241

Query: 232 GKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA 290
           G   +  +  +  +F+++      N  ++   T  G   I + +K+    E+     +  
Sbjct: 242 GDLGFFAKGVMVKEFEDVAFSLEPNQVSDLVETTYGYHIIKVFEKK---NEVTPFEDVKE 298

Query: 291 QNTPTKIEKHEAEYVKKLRSNAIIH 315
                  +K   ++V  L+ +A I 
Sbjct: 299 NIKNELAQKSYLDFVASLKESAKIE 323


>gi|270157914|ref|ZP_06186571.1| chaperone SurA [Legionella longbeachae D-4968]
 gi|289163812|ref|YP_003453950.1| peptidyl-prolyl cis-trans isomerase SurA [Legionella longbeachae
           NSW150]
 gi|269989939|gb|EEZ96193.1| chaperone SurA [Legionella longbeachae D-4968]
 gi|288856985|emb|CBJ10799.1| putative peptidyl-prolyl cis-trans isomerase SurA [Legionella
           longbeachae NSW150]
          Length = 431

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/316 (11%), Positives = 104/316 (32%), Gaps = 17/316 (5%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK------- 67
           +     ++ IF  V +   ++  M  ++   +N  VIT+ +++K++ L K Q        
Sbjct: 1   MYKKIALICIFFSVVMGIAQAKQMLDKVVAVVNDGVITESELNKQVELSKKQILAQKMQL 60

Query: 68  -INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
                L K  +Q LI   L+ Q  +K+G+T D   +N    + A    ++       + +
Sbjct: 61  PEESVLRKQVLQHLIDVDLQLQMAKKNGLTVDDTELNQAIEKIASANHVTLTQLREEIVR 120

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM----KNITVREYLIRT 182
           QG+  + +++ +  + +   + +            ++    +          +   +   
Sbjct: 121 QGMSWDEYRENIRKEMLLSHLQQKAVGRDAMVTSEQVEQYLKTEGGIVDRSALTYRIQNI 180

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
           V+    +   +     + + +       +         + +S    +  G       +++
Sbjct: 181 VIPLGEEPTSEQVKKAKNKAELLLSKIKKGDDFSRLAIENSSGEFALEGGDLGERHLAEI 240

Query: 243 HPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG----GEIALKAYLSAQNTPTKI 297
              F + ++K        P     G + I +                  ++  +  P  +
Sbjct: 241 PELFAKEVVKMKVGQVAGPLRAGNGFQLIKLVSIGGENQHHIITKTHVRHILLKPDPNML 300

Query: 298 EKHEAEYVKKLRSNAI 313
            +   + V+ +     
Sbjct: 301 PEDAKKQVRNIYQQIK 316



 Score = 85.1 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/274 (11%), Positives = 81/274 (29%), Gaps = 8/274 (2%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           +T   + + +           L       +I    +    +       +  +     +  
Sbjct: 152 VTSEQVEQYLKTEGGIVDRSALTYRIQNIVIPLGEEPTSEQVKKAKNKAELLLSKIKKGD 211

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML-----KYGNLEMEIPA 165
             + L+ E+ S     +G            +    +VVK          + GN    I  
Sbjct: 212 DFSRLAIENSSGEFALEGGDLGERHLAEIPELFAKEVVKMKVGQVAGPLRAGNGFQLIKL 271

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-S 224
                +N              +  +        +K++++  +            ++++  
Sbjct: 272 VSIGGENQHHIITKTHVRHILLKPDPNMLPEDAKKQVRNIYQQIKAGKDFALMAKQYSLD 331

Query: 225 KIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIA 283
               V  G   ++    L P+F+  + K + N  + P  +Q G   I +  ++      A
Sbjct: 332 SASAVKGGDLGWVSPGVLVPEFEKAMDKLAINEISPPVKSQFGWHLIQVLGRKQEDDSEA 391

Query: 284 LK-AYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            K   +       K  +    + + +R++A ++ 
Sbjct: 392 FKVQKVRQFLQQRKFAEAVQNWQQHIRTDAYVNI 425


>gi|119355885|ref|YP_910529.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353234|gb|ABL64105.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
           phaeobacteroides DSM 266]
          Length = 438

 Score =  107 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/297 (11%), Positives = 95/297 (31%), Gaps = 14/297 (4%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE-- 71
           K+LT    +++      +      ++ RI   +  EVI   +I  R  +  +Q    +  
Sbjct: 3   KMLTAAVFVMLVAFSFTLGNLHADVADRIVAVVGNEVILKSEIDDRALMTVMQYPETQKD 62

Query: 72  --LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
             L++  +  +I + +   +        D +T++    +  +          +  +K G 
Sbjct: 63  TRLKEKILAGIIDQKVILVKARIDSTQVDESTLDALTNERLKMLASRFASKEAMEEKFGK 122

Query: 130 GDNHFKQYLAIQSIWPDVVK-----NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
                +Q +  +     +++         +   + E        K +   V E +  + +
Sbjct: 123 SMGVIRQEIRNELKDQQLIETLRKKQLAGITVTHEETVDFYRNHKQQLPQVSELVGLSQI 182

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLH 243
              PD    ++     ++K  +              K++         G   Y+ + +L 
Sbjct: 183 LKYPDLPQGSKDAALAQMKIVQAELKAGADFAATARKYSQDPGSAKLGGDLGYVQKGELV 242

Query: 244 PQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
             F++          ++   T+ G   I   +K+          ++      +K ++
Sbjct: 243 RSFEDAAFLLKDGKISDIVETRYGYHIIQRLEKKP---NAVHLRHILIAYDQSKTDE 296



 Score = 37.0 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/169 (9%), Positives = 46/169 (27%), Gaps = 17/169 (10%)

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
            +  +          +R +L +   +K    G VQ   +   +         +  +K++ 
Sbjct: 267 YHIIQRLEKKPNAVHLRHILIAYDQSKTDEPGTVQLLSRIKSDVLAGRATFADMAKKYSD 326

Query: 225 KIHDVSIGKA---QYLLESDLHPQFQNLLKK-------SQNNTTNPYVTQKG-----VEY 269
                 +G         ++ L                 +  + ++P              
Sbjct: 327 DPVSGKLGGVILSGGSGKTLLPVASLRPQMMQIVGSLRNIGDISDPQKIDFQKGNLFYGI 386

Query: 270 IAICDKRDLGGEIALKAY--LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             +  K  +      + Y  L       K ++   E++ +L+   ++  
Sbjct: 387 FQLNAKIPVHQLNLEQDYASLEELALEAKKQERYNEWLSQLKKEVLVRI 435


>gi|261338952|ref|ZP_05966810.1| hypothetical protein ENTCAN_05153 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318779|gb|EFC57717.1| peptidylprolyl cis-trans isomerase SurA [Enterobacter cancerogenus
           ATCC 35316]
          Length = 428

 Score =  107 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/311 (11%), Positives = 104/311 (33%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGEL 72
           +L+   +V   S+ +  +  ++   +N  V+ + D+   +  +KL           +  L
Sbjct: 7   LLLGVAMVANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMKSVKLNSGEAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   GI   
Sbjct: 67  RHQILERLIMDQIVLQMGQKMGVKISDEQLDQAIANIAKQNNMTPDQMRSRLAYDGISYA 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP---ANKQKMKNITVREYLIRTVLFSIPD 189
            ++  +  + +  +V  N+   +   L  E+           + +    L   ++    +
Sbjct: 127 TYRNQIRKEMLISEVRNNEVRRRVTILPQEVDALAKQVGNQNDASTELNLSHILIPLPEN 186

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                    + + +   E              +++    +  G+  +    +L   F   
Sbjct: 187 PTSDQAAEAESQARSIVEQARNGGDFGKLAITYSADQQALKGGQMGWGRIQELPSLFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   +      
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQNISVTEVHARHILLKPSPIMTDDQARAK 306

Query: 305 VKKLRSNAIIH 315
           ++++  +A I 
Sbjct: 307 LEQI--SADIK 315



 Score = 87.8 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 92/288 (31%), Gaps = 25/288 (8%)

Query: 47  NGEV-----ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           N EV     I   ++      +  Q             L    +   E   S    ++ +
Sbjct: 143 NNEVRRRVTILPQEVDALAKQVGNQNDASTELN-----LSHILIPLPENPTSDQAAEAES 197

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
                V+ ARN G   +   ++   Q         +  IQ +     +            
Sbjct: 198 QARSIVEQARNGGDFGKLAITYSADQQALKGGQMGWGRIQELPSLFAQALSTAKKGDIVG 257

Query: 152 -FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
                 G   +++   + + +NI+V E   R +L         +Q    K  + + + + 
Sbjct: 258 PIRSGVGFHILKVNDLRGQSQNISVTEVHARHILLKPSPIMTDDQA-RAKLEQISADIKS 316

Query: 211 RLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVE 268
                 N  ++F+         G   +       P F++  +K S+   + P  +  G  
Sbjct: 317 GKTSFANAAKEFSQDPGSANQGGDLGWAAADIYDPAFRDALMKMSKGQISAPVHSSFGWH 376

Query: 269 YIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            I + D R++   + A K          K  +  A ++++ R++A + 
Sbjct: 377 LIELLDTRNVDKTDAAQKDRAYRMLFNRKFSEEAATWMQEQRASAYVK 424


>gi|254459474|ref|ZP_05072890.1| ppic-type ppiase domain protein [Rhodobacterales bacterium
           HTCC2083]
 gi|206676063|gb|EDZ40550.1| ppic-type ppiase domain protein [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 281

 Score =  107 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/306 (12%), Positives = 81/306 (26%), Gaps = 50/306 (16%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--- 69
           +   T +   +    +  +   +     ++  T+NG  IT G +    + L  Q  N   
Sbjct: 1   MLKRTPFLASVAAVTLLALPLSAETGIDQVVATVNGTDITMGHMIVVRSGLPDQYRNLPD 60

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
             L K  + ++I +T+                        A+  G + +     L+ +  
Sbjct: 61  DVLFKGILDQVIQQTILA----------------------AQAGGDTPDRVRLALENE-- 96

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                        +  + +            +     K     +  RE+    +L    D
Sbjct: 97  ---------RRALMAAEHMDVVLADAVTEDAVAAAYEKTYAGAVPEREFDASHILVETED 147

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                                         ++ ++       G   +     + P+F+N 
Sbjct: 148 EAKA-----------LVTDLDGGADFAELAKEKSTGPSGPRGGALGWFGTGQMVPEFENA 196

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
                    + P  TQ G   I + D R    +      + A        +    Y+ KL
Sbjct: 197 VKDMEVGAVSTPIKTQFGWHVIKLNDTR--SEDAPKIDDVRADLEQQVRMETVDAYIAKL 254

Query: 309 RSNAII 314
              A I
Sbjct: 255 TEGATI 260


>gi|154246774|ref|YP_001417732.1| putative peptidyl-prolyl cis-trans isomerase SurA [Xanthobacter
           autotrophicus Py2]
 gi|154160859|gb|ABS68075.1| putative peptidyl-prolyl cis-trans isomerase SurA [Xanthobacter
           autotrophicus Py2]
          Length = 303

 Score =  107 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 63/282 (22%), Positives = 117/282 (41%), Gaps = 5/282 (1%)

Query: 36  WAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGI 95
            A + +I   +NG+ IT  D+S+R  + ++ +      + A+++LI E +K Q+  +  +
Sbjct: 23  PAQAQQIIVMVNGDPITTFDVSQRQLMHQMIERKSVSAQQALEDLIDERIKIQQAIRLKM 82

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
             +   V+  +   A  +G + E  +    +QG+ D  FKQ L    +W   V+      
Sbjct: 83  EVEQKDVDRLYASVAERSGRTPEQLTEGFKQQGLNDRTFKQKLFADYVWGQYVRAR---S 139

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
                 +        K    +       L  I     +N G    R+ +A   R R    
Sbjct: 140 GTVNVRDADVVAALQKRGETQMIATEYTLMPIVFVVPRNAGNYAARLAEANALRGRFTDC 199

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICD 274
            +   +    + +V +      L S++ PQ + +  K      T P V Q GVE  AIC 
Sbjct: 200 -DAGAQTVKSLKEVVVRPKVTRLSSEMPPQLRQILDKTEIGRLTPPEVAQSGVETFAICG 258

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           KR++ GE A K  +  + +  +      +++ +LR  ++I Y
Sbjct: 259 KREVRGESAQKKEIKDELSNAQFAAESKKFMAELRKQSLIEY 300


>gi|329850880|ref|ZP_08265725.1| PPIC-type PPIASE domain protein [Asticcacaulis biprosthecum C19]
 gi|328841195|gb|EGF90766.1| PPIC-type PPIASE domain protein [Asticcacaulis biprosthecum C19]
          Length = 445

 Score =  107 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 99/263 (37%), Gaps = 8/263 (3%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL-------QKINGELEKIAVQELIV 82
             +     +S  +  ++N ++IT  D+ +R+ LL +       Q+     ++ A+  L+ 
Sbjct: 47  APAPNLPQLSEGMLISVNDDMITSYDLKQRMLLLIVTSGVQVTQENYAAFQQQAINGLVD 106

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           E L+ QE++   +  D   +N    + A  +GL+ E   + L K GI     K  +  ++
Sbjct: 107 ERLQMQELDHWKVKVDDADINEELERMASQSGLTGEQLLTELKKVGIEPATLKSQIRAET 166

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
            W  +V   +         ++     ++     ++  +   +F  P      +   +   
Sbjct: 167 GWSRLVGGRYQSNAKVGSAQVDGTMDRIVADGQKQQYLVAEIFLDPAQAGGIENAQKGAQ 226

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPY 261
           +   + + R         +F++       G A +L+  +L P  +           T P 
Sbjct: 227 QLYNQLQARAAPFQAVARQFSNAPSAAQGGDAGWLVADNLDPAIEVALAAAQPGEMTPPI 286

Query: 262 VTQKGVEYIAICDKRDLGGEIAL 284
            T+ GV    +  K    G++ +
Sbjct: 287 TTEDGVYIYLLRQKTTGDGDMVM 309



 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 45/156 (28%), Gaps = 1/156 (0%)

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           E       ++  T  +  +   L         N    +     +     R          
Sbjct: 289 EDGVYIYLLRQKTTGDGDMVMHLKQAAIPLAPNASESEVANAQSALLSFRSKVSSCDALD 348

Query: 222 FASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
            A    ++ +        S L       L        + P    + +  + +CD+R  G 
Sbjct: 349 EAKVPGNIQVVDLGEAQLSTLLPDYVATLKPLKGKQVSQPVRNSQFMNVVYVCDRRLAGE 408

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
               +  + +Q   T++      Y+++LR +A I  
Sbjct: 409 NALTREQVESQLVNTRLAMLGKRYLRELRGSATIEN 444


>gi|261823065|ref|YP_003261171.1| peptidyl-prolyl cis-trans isomerase SurA [Pectobacterium wasabiae
           WPP163]
 gi|261607078|gb|ACX89564.1| Peptidylprolyl isomerase [Pectobacterium wasabiae WPP163]
          Length = 431

 Score =  107 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/309 (11%), Positives = 101/309 (32%), Gaps = 16/309 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   +    ++ +  +  ++   ++  V+ + D++  +  +KL              L
Sbjct: 7   LILGLALSASTAFAAPQVVDKVAAVVDNSVVLESDVNSLLQSVKLNAQQAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
                  LI++ +  Q  +K GI      ++      A    +S +   S L  +G+  N
Sbjct: 67  RHQITDRLIMDNIILQMAQKMGIQVTDEQLDQAITNIAAQNRMSLDQLKSQLAYEGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + +  +V  N+   +   L  E+    +++ N T     +      IP  + 
Sbjct: 127 TYRNQIRKEMLISEVRNNEVRRRVTVLPQEVDTLAKQIANQTGENDELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDA---EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
             Q  V +    A    +              ++S    +  G+  +    ++   F + 
Sbjct: 187 PTQQQVDEAENLATSLVKQISEGADFGKLAITYSSDSQALKGGQMGWGKLQEIPTLFAER 246

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
           L +  +     P  +  G   + + D R     +        ++  + +    +      
Sbjct: 247 LTQAQKGQVVGPIRSGVGFHILKVNDIRGGNKSVSVTETHARHILIKPSVVMTDSQAQAK 306

Query: 305 VKKLRSNAI 313
           +  +     
Sbjct: 307 LADVAQQIK 315



 Score = 83.6 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 55/167 (32%), Gaps = 4/167 (2%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                G   +++   +   K+++V E   R +L         +Q    K    A++ +  
Sbjct: 259 IRSGVGFHILKVNDIRGGNKSVSVTETHARHILIKPSVVMTDSQAQ-AKLADVAQQIKNG 317

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEY 269
                 + +  +         G   +       P F++ L K  +   + P  +  G   
Sbjct: 318 STDFAAQAKLLSQDPGSANQGGDLGWASPDMYDPAFRDALLKLKKGEISQPVHSSFGWHL 377

Query: 270 IAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           I + D R +   + A K          K  +    ++++ R+ A + 
Sbjct: 378 IQLLDTRQVDKTDAAQKEQAYRMIFNRKFAEEAQTWMQEQRAAAYVK 424


>gi|196230321|ref|ZP_03129184.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chthoniobacter
           flavus Ellin428]
 gi|196225918|gb|EDY20425.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chthoniobacter
           flavus Ellin428]
          Length = 319

 Score =  107 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/319 (11%), Positives = 99/319 (31%), Gaps = 18/319 (5%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK-----------RIAL 62
             L    ++ I   +   + ++  +   I   +N +V+T   + +            +  
Sbjct: 4   SRLIPLSLVCIGLAISTFTARAQEVLDGIAAVVNSDVVTFSQVRELVGPKEKQAHETLKG 63

Query: 63  LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN-TGLSAEDFS 121
            +L +   E+   A+ +LI   L  QE +  G T     ++       ++  G   + F 
Sbjct: 64  QELVEKIKEIRTEAINDLIDRALIIQEFKTKGYTIPDYFIDDRIQGIIKDEFGNDRQAFL 123

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
             L  Q      F+       I  ++ K          + +I A  ++      +   ++
Sbjct: 124 RTLAAQNYTLEKFRDLQKDMIIVSEMRKQAVKGATSVPDAKITAYYKEHLEEYSQPEQMK 183

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
                +   +       +K I +  +  +   +  +    ++        G   ++    
Sbjct: 184 LR---MIAIRGVENDSRRKMIDEIRQKIVGGAEFGDLARMYSEDSSQEQYGDWGWIDRKK 240

Query: 242 LHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIE 298
           L+    +          +           +    K+    +    +   +      T+ +
Sbjct: 241 LNESLTKTAFSLKPGEMSQVVELGGSYYLLYCEAKKPATVKPLKDVHDEIEKVLLQTERQ 300

Query: 299 KHEAEYVKKLRSNAIIHYY 317
           + +A+++ KLR  A I  Y
Sbjct: 301 QQQADWLAKLRRKAYIKMY 319


>gi|325292484|ref|YP_004278348.1| survival protein surA precursor / peptidyl-prolyl cis-trans
           isomerase SurA [Agrobacterium sp. H13-3]
 gi|325060337|gb|ADY64028.1| putative survival protein surA precursor / peptidyl-prolyl
           cis-trans isomerase SurA [Agrobacterium sp. H13-3]
          Length = 315

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 145/292 (49%), Gaps = 7/292 (2%)

Query: 28  VPIVSYKSWAMSSRIR-TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLK 86
           + +  + S A +       +N   IT+ DI++R+A LKLQ+ +G L + A ++L+ E LK
Sbjct: 23  MAVAPFASQAFADSTVKIVVNKTPITNDDIARRVAFLKLQRQSGNLAEKAREQLVDEALK 82

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
           ++EI +  ++  +  V+  F + A N  ++ +  +  L K G+G +HFK ++A+Q  WP 
Sbjct: 83  REEIGRVKMSVSTQEVDAAFARFAANNKMNPQQLTQILSKAGVGADHFKAFIAVQMSWPR 142

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           +V   +  +      ++    ++  +  V        +  +     +N     KR  +AE
Sbjct: 143 LVNARYGARGKMSNQDLVTRLRERGDKPVTTEYFLQQVIFVIPESKRN-AITGKRKAEAE 201

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQK 265
            SR R P   ++   FA+ + DV+I     +L  +L  +++  + K  +  TT   VT+K
Sbjct: 202 ASRKRYPGC-DQAMTFAATMRDVAIKDLGRILAPELPEEWKPLVEKTKEGGTTGTRVTEK 260

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNTPTKI---EKHEAEYVKKLRSNAII 314
           GVEY+AIC +R +  + A +    +++          +E +Y+ +LR  A I
Sbjct: 261 GVEYLAICKQRQVSDDYAAEMVFKSEDLMKAKGGENPNEKKYMDELRKKAQI 312


>gi|167622857|ref|YP_001673151.1| SurA domain-containing protein [Shewanella halifaxensis HAW-EB4]
 gi|167352879|gb|ABZ75492.1| SurA domain [Shewanella halifaxensis HAW-EB4]
          Length = 434

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/310 (11%), Positives = 103/310 (33%), Gaps = 15/310 (4%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-- 70
           +K        +I   +    + +     R+   IN  +I + +++  +  ++    N   
Sbjct: 1   MKRCNQLIFALITLAMSQTIHAAPEPLDRVTVQINEGIILESEVTGMVKTIRANAANAGQ 60

Query: 71  ------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L    ++ LI+  L+ Q  ++ G+      ++      A+   ++     + +
Sbjct: 61  KLPSDTALRTQVIERLILTRLQLQMADRIGLHIGDLQLDQTIENIAKEQKMTVAQMKAQI 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           + +G     +++ L  +    ++ +     +      EI +  + +    ++E   +   
Sbjct: 121 ESEGTTFAQYREQLREEITLGEIQRIQVQRRIQVSPQEINSLVKLINEQGLKEVEFQIGH 180

Query: 185 FSIPDNKLQNQGFVQ---KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             I      N   ++   KR     +         +     +S    +  G   Y+  ++
Sbjct: 181 ILIDVPSDANSQQLEAASKRAAVVMKRLKDGDDFRSIAIAASSGPKALEGGIWDYMNINE 240

Query: 242 LHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK---AYLSAQNTPTKI 297
           +   F + +      +   P  +  G   I + D R L  +   +    ++  + +P   
Sbjct: 241 MPTLFAEVVTDAKTGDIIGPIKSASGFHIIKVMDARGLETKEVKEVKSRHILLKPSPILS 300

Query: 298 EKHEAEYVKK 307
           E+     + +
Sbjct: 301 EERAKSMMDR 310



 Score = 79.3 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/294 (10%), Positives = 76/294 (25%), Gaps = 27/294 (9%)

Query: 49  EVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGI------------T 96
           E IT G+I +     ++Q    E+  +    LI E   K+   + G              
Sbjct: 136 EEITLGEIQRIQVQRRIQVSPQEINSLVK--LINEQGLKEVEFQIGHILIDVPSDANSQQ 193

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK- 155
            ++ +     V      G      +                    +  P +         
Sbjct: 194 LEAASKRAAVVMKRLKDGDDFRSIAIAASSGPKALEGGIWDYMNINEMPTLFAEVVTDAK 253

Query: 156 -------YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
                    +            + +  +E         +            K + D   +
Sbjct: 254 TGDIIGPIKSASGFHIIKVMDARGLETKEVKEVKSRHILLKPSPILSEERAKSMMDRFLT 313

Query: 209 RLRL--PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQ 264
           +++    K  +   +++         G+  +   +   P F   L        + P+ + 
Sbjct: 314 QVKSGEAKFEDLARQYSEDPGSAAKGGELGWADPNIYVPAFAQELNSLEIGGYSEPFRST 373

Query: 265 KGVEYIAICDKRDLGG-EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            G   + + ++R     +              K  +    ++ ++R+ A I  +
Sbjct: 374 HGWHIVQLEERRTTDATDKFNTNRAHQLIYRRKFNEELQNWLDEMRAEAFIDIF 427


>gi|194335197|ref|YP_002016991.1| SurA domain [Pelodictyon phaeoclathratiforme BU-1]
 gi|194307674|gb|ACF42374.1| SurA domain [Pelodictyon phaeoclathratiforme BU-1]
          Length = 438

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/277 (12%), Positives = 90/277 (32%), Gaps = 14/277 (5%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSS---RIRTTINGEVITDGDISKRIALLKLQKI--- 68
           +   +    +   +   S ++ A++    RI   +  EVI   +I  R  + ++Q     
Sbjct: 1   MKKVFGKAALLLFIGSSSLQAPAIADMADRIVAVVGNEVIFKSEIDSRELMARMQYPELT 60

Query: 69  -NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
            N  L +  +  LI + +   + +   ++ D N+++    +  R  G      +    + 
Sbjct: 61  KNNGLSRSILDGLIDQKIILAKAKIDSVSIDENSISSAASERFRELGTKFTSKADMESRL 120

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLK-----YGNLEMEIPANKQKMKNITVREYLIRT 182
           G       + +  +     +V      K         E+    +  K +   + E +  +
Sbjct: 121 GKSSAGILEGIRQELRNQQLVDTLRRKKSAGVTVSYDEVMAFYSANKEQIPQIPEEVSVS 180

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESD 241
            +   P    + +      ++                 +++       S G   ++ +  
Sbjct: 181 QILKYPPVSAEEKAQSLATMERIRTEIKGGADFAAMARQYSQDPGSAQSGGDLGFVAKGQ 240

Query: 242 LHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD 277
           L P F+N     ++   ++   T+ G   I +  K  
Sbjct: 241 LIPSFENAAYALNEGKISDIVETRYGYHLIQLLSKEP 277



 Score = 39.7 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 28/285 (9%), Positives = 74/285 (25%), Gaps = 20/285 (7%)

Query: 48  GEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
           G  ++  ++    +  K Q    ++ +      I++       EK+        +     
Sbjct: 151 GVTVSYDEVMAFYSANKEQIP--QIPEEVSVSQILKYPPVSAEEKAQSLATMERIRTEIK 208

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
             A    ++ +        Q  GD  F     +   + +        K  ++        
Sbjct: 209 GGADFAAMARQYSQDPGSAQSGGDLGFVAKGQLIPSFENAAYALNEGKISDIVETRYGYH 268

Query: 168 -QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
             ++ +       +R +L              ++      +         +  +K++   
Sbjct: 269 LIQLLSKEPNSIHVRHILIGFDRKSGDFSSVTRQLNAVRADVLGGKETFADMAKKYSEDP 328

Query: 227 -HDVSIGKA-------QYLLESDLHPQFQN--LLKKSQNNTTNPYVT--QKG---VEYIA 271
                 G                L PQ Q      +   + +        +G        
Sbjct: 329 ASAAQGGTILLSGSSNPLFSPLALRPQLQQILSTLQKSGDISEVQKIDPPQGEPFYAIYR 388

Query: 272 ICDKRDLGGEIALKAY--LSAQNTPTKIEKHEAEYVKKLRSNAII 314
           + ++         K Y  L       K ++   ++V++LR    +
Sbjct: 389 LNERIPAHKLNTEKDYAYLEELALADKNQQIFIKWVEQLRKEVYV 433


>gi|326798883|ref|YP_004316702.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingobacterium sp.
           21]
 gi|326549647|gb|ADZ78032.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingobacterium sp.
           21]
          Length = 464

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/307 (11%), Positives = 98/307 (31%), Gaps = 14/307 (4%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +K       LI       +  +   +  ++   + G +I   DI  + A    +    + 
Sbjct: 1   MKKFAGLLTLIFLACAGALRAQDVQVIDKVAAVVGGNIILQSDIEMQYAQYLSEGNRADP 60

Query: 72  -LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
            ++ + +++L+   L  Q+     I    + V+       R     A             
Sbjct: 61  GVKCMILEQLLTNKLLTQQAAIDSIEVTEDEVDDNINNRLRYMTRQAGGQEQLEKFLNRS 120

Query: 131 DNHFKQYLA---IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
              +K+ +     + +    ++     K G   +E+    +K+   ++  Y     +  I
Sbjct: 121 LLQYKEEMRPAVKEQLIAQKMQAKITEKTGITPLEVKRYFEKIPKDSLPNYNTEVEVGEI 180

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKI-HDVSIGKAQYLLESDLH 243
                  +   Q     AE  R+ +    +       ++       S G   +   S + 
Sbjct: 181 VVFPKLTKEEKQPFYDRAESLRMGIKAGDDFGTMARLYSQDPGSASSGGDLGFFDRSSMV 240

Query: 244 PQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNT-PTKIEKHE 301
            +F ++  +      +N + ++ G  ++ + ++R   GE     ++        +  +  
Sbjct: 241 KEFTSVAFRLKPGEISNVFESEYGFHFLQVLERR---GEQVRARHILIGVKPNEQSMERA 297

Query: 302 AEYVKKL 308
            + +  +
Sbjct: 298 KKQIDSI 304



 Score = 40.4 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 25/286 (8%), Positives = 75/286 (26%), Gaps = 20/286 (6%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           IT  ++ +    +    +     ++ V E++V     +E ++       +          
Sbjct: 151 ITPLEVKRYFEKIPKDSLPNYNTEVEVGEIVVFPKLTKEEKQPFYDRAESLRMGIKAGDD 210

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
             T              G     F +   ++       +          E E   +  ++
Sbjct: 211 FGTMARLYSQDPGSASSGGDLGFFDRSSMVKEFTSVAFRLKPGEISNVFESEYGFHFLQV 270

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDV 229
                 +   R +L  +  N+   +   ++      + +            ++  ++   
Sbjct: 271 LERRGEQVRARHILIGVKPNEQSMERAKKQIDSIYTQVKDNKIPFSTAAALYSGDEMTKY 330

Query: 230 SIGKA----------QYLLESDLHP-QFQNLLKKSQNNTTNPYVTQK------GVEYIAI 272
           + G             Y+    L    F  +        + P+          G  ++ +
Sbjct: 331 NGGMMLNAMNQQTRTTYIPVDQLDAADFSAIDTLKAGEYSKPFAFSDPQTKKEGYRFLYL 390

Query: 273 CDKRDLGGEIALKA--YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             + +       K    +       K+ +  +E+ ++ R    I  
Sbjct: 391 KSRTEPHRASLEKDYAKIKELAEADKLNRVVSEWFEERRKTTYIRI 436


>gi|260366277|ref|ZP_05778733.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus
           K5030]
 gi|308114046|gb|EFO51586.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus
           K5030]
          Length = 555

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 42/406 (10%), Positives = 103/406 (25%), Gaps = 92/406 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + SY     ++     +    I  G+     
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYLVNGSNNS-AAKVGNTEIPRGEFEMAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                       K  +  +I + L  Q+ E  G+      V  
Sbjct: 60  QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDAQVRS 119

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN----------- 150
                 Q   N     E + + L + G   + F +Y+  + +   ++             
Sbjct: 120 MILEMPQFQSNGQFDQEIYQASLRRAGFSPDSFAEYMRRELVREQLLTALQSSEFTLPGE 179

Query: 151 ----------------------DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                 +F  K    + EI A  +   +   R   ++     + 
Sbjct: 180 VQSQGKLFTQTRDIRTVTIDLAEFAKKVELTDEEIQAYYKANPDNFTRPEQVKVSYVELS 239

Query: 189 DNKLQNQGFV---------------------------------QKRIKDAEESRLRLPKD 215
              L+ Q  V                                 + + +   +        
Sbjct: 240 AEALKKQIQVTDEDVKKYYDEHLDKYSSEEQRRVAHILVEGDDEAKAQAILDELNAGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               ++ +       + G   ++    + P F+      K+  + +    +  G   I +
Sbjct: 300 AAVAQEKSDDFGSAENGGDLGWIERDVMDPAFEEAAFALKNPGDMSGLVKSDFGYHIIKL 359

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + +D        + A +  +    K      E   +L   A   Y
Sbjct: 360 EELKDAVAKPFDEVAAEIKQELVDQKAVDQFYELQNELERVAF-EY 404


>gi|20808913|ref|NP_624084.1| parvulin-like peptidyl-prolyl isomerase [Thermoanaerobacter
           tengcongensis MB4]
 gi|46396955|sp|Q8R760|PRSA_THETN RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|20517573|gb|AAM25688.1| Parvulin-like peptidyl-prolyl isomerase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 306

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 95/311 (30%), Gaps = 20/311 (6%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKS--WAMSSRIRTTINGEVITDGDISKRIALLKLQKING 70
           ++     F+ +IF  V +VS  S   A+S  +   +NGE IT+ +  +    +K Q  + 
Sbjct: 1   MRRKIALFLALIFVGVSLVSCSSKKEAVSGDVVAVVNGEKITNAEYQQIFEQVKEQIESA 60

Query: 71  ELEKIAV--QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
                 +  Q+   +       E    +  +  +     +    T    E    +  ++ 
Sbjct: 61  PTYTKDIWNQDYQGKKFLDFVKENVLDSLVAQKLLVQEAKKKNITVTDKEVEEEYNKEKQ 120

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                 K+ +    +   ++  ++       + E+     + K           ++    
Sbjct: 121 FNSKVTKEQIREYLLIDKLL-AEYTKDVKVTDEELKKYYDEHKESFEVMRARHILV---- 175

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQ 247
                     +K  +D  +  ++        ++++       + G         + P+F+
Sbjct: 176 --------ADEKTAEDIYQRLMKGEDFAALAKEYSIDTATKDNGGDLGEFPHGVMVPEFE 227

Query: 248 NLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
                      + P  TQ G   I       +     +K  + +     K  K   E   
Sbjct: 228 EAAFSLKLGEISKPVKTQYGYHIIKSEGI-TVKPFDEVKGTIESYLLNDKKNKVIKEKYD 286

Query: 307 KLRSNAIIHYY 317
           +L   + I  +
Sbjct: 287 ELVKASKIQKF 297


>gi|83591735|ref|YP_425487.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodospirillum
           rubrum ATCC 11170]
 gi|83574649|gb|ABC21200.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodospirillum
           rubrum ATCC 11170]
          Length = 308

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/307 (11%), Positives = 84/307 (27%), Gaps = 52/307 (16%)

Query: 20  FVLIIFCIVPIVSYKS-WAMSSRIRTTINGEVITDGDISKRIALLKLQKIN------GEL 72
             L     +P+ +  +  A    +   +NG  +    + +R A L+  +          +
Sbjct: 9   LALAGVLALPLFAGPALAADPDPVVAVVNGADVHLSAVQERFAELQASQPQLGGLPLAMV 68

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            +  +  ++   L  +   K+G+  D    +                             
Sbjct: 69  YEQLLNSVVEAELVTEAGRKAGLANDPEVKHRL--------------------------- 101

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                L  + I    ++        +  ++   N+ K +    +E   R +L        
Sbjct: 102 ---DRLLDRLIAGAYMQKVVDEDVTDAAVKARYNEMKAEFKPEKEVHARHIL-------- 150

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLK 251
                 +   KDA +             + ++     + G   +  +  +   F +    
Sbjct: 151 ---LETEDAAKDAIKKIEGGADFTKLASELSTGPSAQTGGDLGFFTKDRMVAPFAEAAFA 207

Query: 252 KSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
                 +  P  T+ G   I I + RD          + +            + V  L+ 
Sbjct: 208 MKVGEVSKAPTKTEFGWHVIKIEEVRDTTF--PPVEEMESHIRDELANAAVEKNVAGLKE 265

Query: 311 NAIIHYY 317
           +A +  +
Sbjct: 266 SAKVKLF 272


>gi|290474826|ref|YP_003467706.1| peptidyl-prolyl cis-trans isomerase (PPIase), involved in
           maturation of outer membrane proteins [Xenorhabdus
           bovienii SS-2004]
 gi|289174139|emb|CBJ80926.1| peptidyl-prolyl cis-trans isomerase (PPIase), involved in
           maturation of outer membrane proteins [Xenorhabdus
           bovienii SS-2004]
          Length = 416

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 92/277 (33%), Gaps = 17/277 (6%)

Query: 52  TDGDISKRIALLKLQKI--------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            + D+ +++  +KL              L    ++ LI++ +  Q  ++  IT     ++
Sbjct: 20  LESDVDEQLQSVKLSAKHAGQQIPDEKALRHQILERLIMDDIILQMAKQMQITIPDQVLD 79

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
                 A    +  ++    L  +G+  N ++  +  + I  +V  N+   +   L  E+
Sbjct: 80  STIANIAAQNHMGLDELKKNLTAEGLNFNTYRNQIRKEMIIAEVRNNEIRRRVTILPQEV 139

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK---LE 220
            A  + + +   +   +      IP  +  +Q  V+K      +    L    +      
Sbjct: 140 EALAKNLSSENNQNTELNVSNILIPLRENPSQAQVEKATAIINKILSELKNGADFGKLAI 199

Query: 221 KFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKR--- 276
            ++     +  G   +    +L   F   L+ +       P  +  G   + I D R   
Sbjct: 200 TYSGDTQALKGGNMGWRKLQELPSLFAEQLQSAHKGQIIGPIRSGVGFHILKINDIRGSN 259

Query: 277 --DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
              +        ++  + +P   +      + KLR  
Sbjct: 260 MPQVAATEVNARHILLKTSPIMTDDQARSTLMKLREE 296



 Score = 85.1 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/304 (12%), Positives = 84/304 (27%), Gaps = 17/304 (5%)

Query: 28  VPIVSYKSWAMSSRIRTTI-NGEV-----ITDGDISKRIALLKLQKINGELEKIAVQELI 81
           +   +Y++      I   + N E+     I   ++      L  +      E      LI
Sbjct: 105 LNFNTYRNQIRKEMIIAEVRNNEIRRRVTILPQEVEALAKNLSSENN-QNTELNVSNILI 163

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
                  + +    T   N +       A    L+          +G      K      
Sbjct: 164 PLRENPSQAQVEKATAIINKILSELKNGADFGKLAITYSGDTQALKGGNMGWRKLQELPS 223

Query: 142 SIWPDVVKND-------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                +                G   ++I   +           +    +       + +
Sbjct: 224 LFAEQLQSAHKGQIIGPIRSGVGFHILKINDIRGSNMPQVAATEVNARHILLKTSPIMTD 283

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKK 252
                  +K  EE            EK++      +  G+  + + S   P F++  +K 
Sbjct: 284 DQARSTLMKLREEILSGKTTFNAAAEKYSEDPGTAMRGGELGWNVPSTYAPAFRDALVKL 343

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLG-GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            +   + P  +  G   I + D R +   + A K          K+ +    +++ LR++
Sbjct: 344 KKGELSQPVHSTFGWHLIQLIDTRKVDRTDSAQKDNAYRLLLNRKLGEETQNWMQDLRAS 403

Query: 312 AIIH 315
           A + 
Sbjct: 404 AYVK 407


>gi|197119425|ref|YP_002139852.1| PpiC-type peptidylprolyl cis-trans isomerase [Geobacter
           bemidjiensis Bem]
 gi|197088785|gb|ACH40056.1| peptidylprolyl cis-trans isomerase, PpiC-type [Geobacter
           bemidjiensis Bem]
          Length = 325

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/324 (12%), Positives = 97/324 (29%), Gaps = 24/324 (7%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSS-------RIRTTINGEVITDGDISK------- 58
           ++++ T   L+  C + +   +             +I   +N   I    I         
Sbjct: 1   MQVMKTIICLLTACALSLAGNQPAWAEPIAEEKGLQIAARVNDRPIYYHQIKANVERTLA 60

Query: 59  RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
           +   L   K++ ++ K   ++ I   +  + + ++G       +            L + 
Sbjct: 61  KYKRLGAAKVSDDVRKQVQKDEINRQVDMELLVQAGEKLKQTDLEKKMEALLS---LKSP 117

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
             S+   K    +   ++ L    +    +    +      E ++    +          
Sbjct: 118 QGSTSAKKDESKEKEMREQLRRNLLAESYLIQRGIQDVRVPEEDLKRFYKDNSAKFTVPE 177

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL----PKDCNKLEKFASKIHDVSIGKA 234
            ++     I  NK      + +      + R  +           ++ +S       G  
Sbjct: 178 AVKASHIMITVNKKATPEEIAQANAKIVKVREEVLQGKKSFEELAKEHSSGDSASKGGDL 237

Query: 235 QYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQ 291
            Y+    + P+F +   +      ++   T+ G   I + DK+   +     +K  L   
Sbjct: 238 GYINPQFMPPEFDKVAFQLKVGEVSDVVKTKFGFHVIKVFDKKPSRVQEFAEVKGLLEKF 297

Query: 292 NTPTKIEKHEAEYVKKLRSNAIIH 315
                 E+   E   +LR +A I 
Sbjct: 298 LLNQYQERKRTEIAMELRRDARIE 321


>gi|221639318|ref|YP_002525580.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides KD131]
 gi|221160099|gb|ACM01079.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides KD131]
          Length = 405

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 107/305 (35%), Gaps = 7/305 (2%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRT---TINGEVITDGDISKRIALLKLQKIN 69
           +K   ++ + ++       +    A++  +      +N  VIT+ +  +R+  L +    
Sbjct: 1   MKTFVSHCLALVVAAGLTFTSAPGALAQNLFAPRLVVNDRVITNYEFEQRVRFLTILGAT 60

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
           G++EK A+  LI + ++    E++G+      +     + A    LSAE F++ L K G+
Sbjct: 61  GDVEKQAMDALIEDKIRFYAAEQAGLKATEEQIKEGMEEFAGRANLSAEQFAAELGKAGV 120

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
               F+ ++    IW ++++  F       E  I     +  +      L+  ++   P 
Sbjct: 121 AVETFRDFVHAGLIWRELMRAKFGAVARPTETAIDRAITRQTSRASIRLLLSEIIIPAPP 180

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
            +      +   I+                  +++       G+  ++   +L P    +
Sbjct: 181 GQEAEAQALAAEIRRNVRGEGAF---AEAARTYSASSSAERGGRIDWVPLQNLPPTLGPM 237

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
            L  S    ++P      V    +  + +          L         +   A  + ++
Sbjct: 238 LLTLSPGQVSDPVKIPNAVALFQLRGRDESSAPPPEGIELEYAELFLPNDAEFAAELGRI 297

Query: 309 RSNAI 313
            S A 
Sbjct: 298 TSRAD 302



 Score = 40.8 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 20/46 (43%)

Query: 269 YIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            + +C +R +  E   +  L+       I      Y+  LR+NAII
Sbjct: 357 VLMLCARRPVSAEPIDRGRLAQALANQSISASADAYMADLRANAII 402


>gi|85710398|ref|ZP_01041462.1| peptidyl-prolyl isomerase [Erythrobacter sp. NAP1]
 gi|85687576|gb|EAQ27581.1| peptidyl-prolyl isomerase [Erythrobacter sp. NAP1]
          Length = 448

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 95/283 (33%), Gaps = 15/283 (5%)

Query: 44  TTINGEVITDGDISKRIALLK-------LQKINGELEKIAVQELIVETLKKQEIEKSGIT 96
             +NG VIT  DI +R+AL+               L    ++ LI ETLK Q      I 
Sbjct: 59  AVVNGFVITGTDIDQRVALVTNASEVEVSDAERQRLRVQVLRNLIDETLKIQAARAQEIG 118

Query: 97  FDSNTVNYFFVQHARNT-GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
            +   V   + Q A    G + E    +L   G      K+ +  +  W ++++ +    
Sbjct: 119 VERAEVEQTYQQLAAQNFGQNPERMDEYLASIGSSPAALKRQIEGEIAWENLIRRNISPF 178

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
                 E+    ++++     E      ++   +   +N+  V + ++   E        
Sbjct: 179 VNVSAEEVTGVLERLEEARGTEEYRLGEIY--MNATEENREAVIQNMQRIMEQLEAGGSF 236

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLH-PQFQNLLKKSQNNTTNPYVTQKGVEYIAICD 274
                +F+     V  G   +L  + L  P      +        P     G   I + D
Sbjct: 237 VAYARQFSEASTAVQGGDTGFLRLATLPGPMADAARQMQPGQLVGPIAIPGGFTIIYMID 296

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           +R +       + LS +      ++       +  +NA I  +
Sbjct: 297 RRQVLTADPRDSVLSLKQISIAFDQGT----SEAEANAKIEEF 335



 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 237 LLESDLHPQFQNLL-KKSQNNTTNPYVT-QKGVEYIAICDKRDLGGE-IALKAYLSAQNT 293
           +    L  Q QN+L       TT P+ + Q+GV  + +C + +           +     
Sbjct: 365 IQARQLPEQLQNILLNMQVGQTTPPFGSAQEGVRVLMLCGRDEPEDSGTPTFQTVMTNIE 424

Query: 294 PTKIEKHEAEYVKKLRSNAIIHY 316
             +I K    Y++ LR++A I Y
Sbjct: 425 SERINKRAQRYLRDLRNDAYIEY 447


>gi|325295072|ref|YP_004281586.1| SurA domain [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065520|gb|ADY73527.1| SurA domain [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 283

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 49/307 (15%), Positives = 105/307 (34%), Gaps = 27/307 (8%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K L  +F++++   +P        +   I   +NGE I   ++       ++  +    
Sbjct: 1   MKRLLVFFLVMVLLTLP----SYAKIVDYIVAVVNGEPILYSELLDYAKTNRINNL---- 52

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS-AEDFSSFLDKQGIGD 131
            K A   LI   +   E +  G+      +N       +N+G    E+F   L K+G+  
Sbjct: 53  -KAARDSLIERKILLTEAKSEGLAVSDEELNRALENFIKNSGFKSKEEFEKALKKEGLTL 111

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
              K+ L  Q +   ++  +   K    ++E+    ++ K   VRE     V        
Sbjct: 112 EEVKEKLKEQLLVAKLIGRNVKSKIRVSDIEVEKVCKEKKKKPVREVYYIYV-------- 163

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLL 250
                  +++     E            ++++       + G    + +  L       +
Sbjct: 164 -----KDKQKANRIMEILDSGIPFEKVAKEYSEDKATAQNGGYLGKVTKGSLIKPLDIAV 218

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
             ++  T     T+ G   I +   +    E   K  +  +    K +K   +Y+  L+S
Sbjct: 219 WSTKPKTYKLVETKGGYYIIYV---KKEEIEKCDKNRIREELYVKKFQKALKDYIDSLKS 275

Query: 311 NAIIHYY 317
            A +  Y
Sbjct: 276 KASVKVY 282


>gi|295704136|ref|YP_003597211.1| foldase protein PrsA [Bacillus megaterium DSM 319]
 gi|294801795|gb|ADF38861.1| foldase protein PrsA [Bacillus megaterium DSM 319]
          Length = 291

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 78/281 (27%), Gaps = 26/281 (9%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
             S++  T+  E IT   +   +                +  LI + +  +E  K  I  
Sbjct: 27  NKSKVVATVGDEKITKDQLYDALLAQGGSS--------VLDSLIEQKVISKEAAKQNIKV 78

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
               +N          G       +               L          K        
Sbjct: 79  TDKEINAELENLKSQYGGEDALNQALASS-----GVKLSELKKDLKTNIEAKKMVESTIN 133

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             + E+ +   + K+    E  ++                 +K  K+ +    +      
Sbjct: 134 IKDSEMKSYFDQNKDSLATEAQVKASHIL---------VADEKTAKEVKAKLDKGEDFAK 184

Query: 218 KLEKFASK-IHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDK 275
             +++++      + G   Y  + D+   F N       N  ++P  T+ G   I +  K
Sbjct: 185 LAKEYSTDTASKSNGGDLGYFKKGDMVEAFANQAFSMKVNEVSDPVKTEYGYHIIKVTGK 244

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           ++         KA +       K +     +++KL+    I
Sbjct: 245 KEAQKATYENSKAKIKQTLLDQKYQTEYPTWLQKLKKKYDI 285


>gi|311695072|gb|ADP97945.1| PpiC-type peptidyl-prolyl cis-trans isomerase [marine bacterium
           HP15]
          Length = 614

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/399 (11%), Positives = 101/399 (25%), Gaps = 86/399 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +    I  +    +++   I  + +            T+NGE IT+ +  + +
Sbjct: 1   MLQDIRNNAQGTIAKVIIGLLIVSLSIWGMDAIVGGFSGEPEVATVNGEDITEREFLRVV 60

Query: 61  ALLKLQK------------INGELEKIAVQELIVETLKKQE-----------------IE 91
            +   ++               ++    +  LI E +  Q+                  +
Sbjct: 61  QMESQRRLSRMENPDPSMLDEDQIRTDVLDSLIQEQVLIQDANAQGLELNDADIDALITQ 120

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK---------QYLAIQS 142
                 D       FV   RN G+   +F   + KQ + +                A Q 
Sbjct: 121 MPQFQVDGQFNRDRFVATVRNMGMGVGEFREAMRKQYVVNQIRAGIVQSGLVADENAEQL 180

Query: 143 IWPDVVKNDFM----------LKYGNLEMEIPANKQKMKNITVREYLI------------ 180
           +        F                 + ++ A  ++      +   +            
Sbjct: 181 LQIQNQTRSFRVLDIPASSVADAVSVSDADVEAFYEENSGAFQQPERVDAAYITLSLGAL 240

Query: 181 ----------------------RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
                                  +         ++      + +   +E         + 
Sbjct: 241 AESIEVDDAELQAYYEQQAADLASEERRASHILIEEGSDADETMATIQERLAAGESFADL 300

Query: 219 LEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR 276
             +++         G   Y         F+  L    +   + P  T  GV  I + D R
Sbjct: 301 AREYSIDTVSAEDGGDLGYAGRGIYAEPFEEALFALEEGEVSEPVRTSFGVHLIRLEDVR 360

Query: 277 --DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             ++     ++  L  +    K  +  AE   +L  +A 
Sbjct: 361 ESEVPSLDEMEDQLRRELAREKAREQFAEVRAELADSAY 399


>gi|227114234|ref|ZP_03827890.1| peptidyl-prolyl cis-trans isomerase SurA [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 431

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/309 (11%), Positives = 102/309 (33%), Gaps = 16/309 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   +    ++ +  +  ++   ++  V+ + D++  +  +KL              L
Sbjct: 7   LILGLALSASTAFAAPQVVDKVAAVVDNSVVLESDVNSLLQSVKLNAQQAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
                  LI++ +  Q  +K GI      +N      A    +S +   S L  +G+  N
Sbjct: 67  RHQITDRLIMDNIILQMAQKMGIQVTDEQLNQAITNIAAQNRMSLDQLKSQLAYEGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + +  +V  N+   +   L  E+    +++   T     +      IP ++ 
Sbjct: 127 TYRNQIRKEMLISEVRNNEVRRRITVLPQEVDTLAKQIATQTGENDELNLSHILIPLSEN 186

Query: 193 QNQGFVQKRIKDA---EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
             Q  V +    A    +              +++    +  G+  +    ++   F + 
Sbjct: 187 PTQQQVDEAENLATSLVKQINEGADFGKLAITYSADSQALKGGQMGWGKLQEIPTLFAER 246

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
           L +  +     P  +  G   + + D R     +        ++  + +    +      
Sbjct: 247 LTQAQKGQVVGPIRSGVGFHILKVNDIRGGNKSVSVTETHARHILIKPSVVMTDSQAQAK 306

Query: 305 VKKLRSNAI 313
           + ++     
Sbjct: 307 LAEVAQQIK 315



 Score = 82.4 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 57/167 (34%), Gaps = 4/167 (2%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                G   +++   +   K+++V E   R +L         +Q    K  + A++ +  
Sbjct: 259 IRSGVGFHILKVNDIRGGNKSVSVTETHARHILIKPSVVMTDSQAQ-AKLAEVAQQIKNG 317

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEY 269
                ++ +  +         G   +       P F++ L K  +   + P  +  G   
Sbjct: 318 STDFASQAKLLSQDPGSANQGGDLGWASPDMYDPAFRDALLKLKKGEISQPVHSSFGWHL 377

Query: 270 IAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           I + D R +   + A K          K  +    ++++ R+ A + 
Sbjct: 378 IQLLDTRQVDKTDAAQKEQAYRMIFNRKFAEEAQTWMQEQRAAAYVK 424


>gi|328473322|gb|EGF44170.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus
           10329]
          Length = 619

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 42/406 (10%), Positives = 103/406 (25%), Gaps = 92/406 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + SY     ++     +    I  G+     
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYLVNGSNNS-AAKVGNTEIPRGEFEMAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                       K  +  +I + L  Q+ E  G+      V  
Sbjct: 60  QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDAQVRS 119

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN----------- 150
                 Q   N     E + + L + G   + F +Y+  + +   ++             
Sbjct: 120 MILEMPQFQSNGQFDQEIYQASLRRAGFSPDSFAEYMRRELVREQLLTALQSSEFTLPGE 179

Query: 151 ----------------------DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                 +F  K    + EI A  +   +   R   ++     + 
Sbjct: 180 VQSQGKLFTQTRDIRTVTIDLAEFAKKVELTDEEIQAYYKANPDNFTRPEQVKVSYVELS 239

Query: 189 DNKLQNQGFV---------------------------------QKRIKDAEESRLRLPKD 215
              L+ Q  V                                 + + +   +        
Sbjct: 240 AEALKKQIQVTDEDVKKYYDEHLDKYSSEEQRRVAHILVEGDDEAKAQAILDELNSGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               ++ +       + G   ++    + P F+      K+  + +    +  G   I +
Sbjct: 300 AAVAQEKSDDFGSAENGGDLGWIERDVMDPAFEEAAFALKNPGDMSGLVKSDFGYHIIKL 359

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + +D        + A +  +    K      E   +L   A   Y
Sbjct: 360 EELKDAVAKPFDEVAAEIKQELVDQKAVDQFYELQNELERVAF-EY 404


>gi|227327727|ref|ZP_03831751.1| peptidyl-prolyl cis-trans isomerase SurA [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 431

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 33/309 (10%), Positives = 101/309 (32%), Gaps = 16/309 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   +    ++ +  +  ++   ++  V+ + D++  +  +KL              L
Sbjct: 7   LILGLALSASTAFAAPQVVDKVAAVVDNSVVLESDVNSLLQSVKLNAQQAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
                  LI++ +  Q  +K GI      ++      A    +S +   S L  +G+  +
Sbjct: 67  RHQITDRLIMDNIILQMAQKMGIQVTDEQLDQAITNIAAQNRMSLDQLKSQLAYEGLNYS 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + +  +V  N+   +   L  E+    +++   T     +      IP  + 
Sbjct: 127 TYRNQIRKEMLISEVRNNEVRRRITVLPQEVDTLAKQIATQTGENDELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDA---EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
             Q  V +    A    +              +++    +  G+  +    ++   F + 
Sbjct: 187 PTQQQVDEAENLATSLVKQINEGADFGKLAITYSADSQALKGGQMGWGKLQEIPTLFAER 246

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
           L +  +     P  +  G   + + D R     +        ++  + +    +      
Sbjct: 247 LTQAQKGQVVGPIRSGVGFHILKVNDIRGGNKSVSVTETHARHILIKPSVVMTDSQAQAK 306

Query: 305 VKKLRSNAI 313
           + ++     
Sbjct: 307 LAEVAQQIK 315



 Score = 82.8 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 57/167 (34%), Gaps = 4/167 (2%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                G   +++   +   K+++V E   R +L         +Q    K  + A++ +  
Sbjct: 259 IRSGVGFHILKVNDIRGGNKSVSVTETHARHILIKPSVVMTDSQAQ-AKLAEVAQQIKNG 317

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEY 269
                ++ +  +         G   +       P F++ L K  +   + P  +  G   
Sbjct: 318 STDFASQAKLLSQDPGSANQGGDLGWASPDMYDPAFRDALLKLKKGEISQPVHSSFGWHL 377

Query: 270 IAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           I + D R +   + A K          K  +    ++++ R+ A + 
Sbjct: 378 IQLLDTRQVDKTDAAQKEQAYRMIFNRKFAEEAQTWMQEQRAAAYVK 424


>gi|225166093|ref|ZP_03727827.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Opitutaceae
           bacterium TAV2]
 gi|224799664|gb|EEG18159.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Opitutaceae
           bacterium TAV2]
          Length = 351

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 98/296 (33%), Gaps = 17/296 (5%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKIN------------GELEKIAVQELIVETLK 86
           ++ I   +   VIT  DI + +A +  Q                 +++  V+ LI  TL 
Sbjct: 56  ANGIAAIVEDRVITVDDIRRELAPILPQIRRDSRNAKEFQDKVQAVQEDIVRSLIDRTLI 115

Query: 87  KQEIEKS-GITFDSNTVNYFF-VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
            ++  K       ++ ++     Q A+        F S+L  +G+    +++ +    ++
Sbjct: 116 VKDFYKDGRRHIPASYIDNAISDQMAQKFDNDRAKFLSYLRARGLTLRDYRKEVEEDLVY 175

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
             +       +       + A  ++ ++   +E  I   +  +     Q    +  R  +
Sbjct: 176 GYMRSQQRKSQSIVSPARVEAYYKQNESKFYQEEAIHLRMIQLNRENGQADAHLIVRANE 235

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVT 263
             +      K  +  + +         G   +  + DL P F        +   T P + 
Sbjct: 236 IIDKFNNGEKFEDLAKAYTQDSRKARGGDWGWQRKVDLKPDFSTPLFSLKKGGVTAPILQ 295

Query: 264 QKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
                 +   D R   +     ++  +          + + ++++KLR  A I  Y
Sbjct: 296 GDACFILYAEDYRAAGVPAIDEVRDQIERTLIAQMARESQEKWLEKLRRGAYIKLY 351


>gi|189423768|ref|YP_001950945.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi
           SZ]
 gi|189420027|gb|ACD94425.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi
           SZ]
          Length = 305

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 39/319 (12%), Positives = 92/319 (28%), Gaps = 47/319 (14%)

Query: 4   KVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA-- 61
            + T LS  + ++ T   L+        S  + +  +++  T+NG  IT  D  + +   
Sbjct: 2   NIRTLLSVTVTVIATA-GLVACQGGGSSSSSTSSKDAKVIATVNGAKITSEDFDREVKAL 60

Query: 62  --LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
              ++      + +K  +  L++  L  Q+  K G+                        
Sbjct: 61  PEYIRAMADTPQGKKEMIDTLVMRELILQQAAKDGVDKGKEIE----------------- 103

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
                             L  + I    +K     +    + E+    ++  +       
Sbjct: 104 -------------EKLAELKKRIIVDTYLKKKVEAESKISDDELKKFYEQNLDKFKAGEQ 150

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
           IR                 ++  +   E   +        +  ++       G   +  +
Sbjct: 151 IRASHIL---------VKSEQEAQSILEQLKKGANFEELAKTKSADSSAAKGGDLGWFGK 201

Query: 240 SDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTK 296
            ++ P F+       +   +    +  G   I +  KR  G      +K  +     P K
Sbjct: 202 GNMVPAFEKAAFGLKEGQLSGIVKSDFGYHIIKLTGKRAAGTRPLDEVKEQIKGAIMPQK 261

Query: 297 IEKHEAEYVKKLRSNAIIH 315
            ++   +  + L+  A I 
Sbjct: 262 QQQVFMKLKEDLKKGAKIE 280


>gi|294498814|ref|YP_003562514.1| foldase protein PrsA [Bacillus megaterium QM B1551]
 gi|294348751|gb|ADE69080.1| foldase protein PrsA [Bacillus megaterium QM B1551]
          Length = 291

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 78/281 (27%), Gaps = 26/281 (9%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
             S++  T+  E IT   +   +                +  LI + +  +E  K  I  
Sbjct: 27  NKSKVVATVGDEKITKDQLYDALLAQGGSS--------VLDSLIEQKVISKEAAKQNIKV 78

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
               +N          G       +               L          K        
Sbjct: 79  TDKEINAELENLKSQYGGEDALNQALASS-----GVKLSELKKDLKTNIEAKKMVESTIN 133

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             + E+ +   + K+    E  ++                 +K  K+ +    +      
Sbjct: 134 IKDSEMKSYFNQNKDSLATEAQVKASHIL---------VADEKTAKEVKAKLDKGEDFAK 184

Query: 218 KLEKFASK-IHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDK 275
             +++++      + G   Y  + D+   F N       N  ++P  T+ G   I +  K
Sbjct: 185 LAKEYSTDTASKSNGGDLGYFKKGDMVEAFANKAFSMKVNEVSDPVKTEYGYHIIKVTGK 244

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           ++         KA +       K +     +++KL+    I
Sbjct: 245 KEAQKATYENSKAKIKQTLLDQKYQTEYPTWLQKLKKKYDI 285


>gi|310825131|ref|YP_003957489.1| foldase protein PrsA [Stigmatella aurantiaca DW4/3-1]
 gi|309398203|gb|ADO75662.1| foldase protein PrsA [Stigmatella aurantiaca DW4/3-1]
          Length = 330

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 90/291 (30%), Gaps = 22/291 (7%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRI--------ALLKLQKINGELEKIAVQELIVETL 85
                 + +   +NGEV+   +  + +           +  +     ++  +  LI   L
Sbjct: 26  PQEEPDANVVAMVNGEVLGRAEFEQELWRELSSAEGPERTPEEVEPFKRALLDTLIKRML 85

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
             Q+ ++  +T   + V+   ++   +    AE+FS  L +  +     +   A + I  
Sbjct: 86  LLQQAKQYNLTVTPDEVDRRMLRL--SGDYPAENFSEVLAQGQMSLAELRAREANRLIIE 143

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
            +  N    +    E E+ A     +        +      +       +   Q +    
Sbjct: 144 KLFTNHVYARVAVTEEELRAAYTAHEAEFQEPEQVHAAQLVVKGLDEARRVQAQLK---- 199

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQ 264
                   K  +   +++        G   +     + P F + +        ++   T+
Sbjct: 200 -----AGKKFADLARRYSLSADAKVGGDLGFFPRGQMPPVFDEVVFNLRPGQVSDVVSTE 254

Query: 265 KGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            G     + + +       + ++A + A+    K E+    + K L   A 
Sbjct: 255 YGYHLFRVLEFKPARKRDFVEVRAKVEAREVKRKQEEAHEAFEKALLDKAK 305


>gi|126462315|ref|YP_001043429.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126103979|gb|ABN76657.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 435

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 108/305 (35%), Gaps = 7/305 (2%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRT---TINGEVITDGDISKRIALLKLQKIN 69
           +K   ++ + ++       +    A++  +      +N  VIT+ +  +R+  L +    
Sbjct: 31  MKTFVSHCLALVVAAGLTFTSAPGALAQNLFAPRLVVNDRVITNYEFEQRVRFLTILGAT 90

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
           G++EK A+  LI + ++    E++G+      +     + A    LSAE F++ L K G+
Sbjct: 91  GDVEKQAMDALIEDKIRFDAAEQAGLKATEEQIKEGMEEFAGRANLSAEQFAAELGKAGV 150

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
               F+ ++    IW ++++  F       E  I     +  +      L+  ++   P 
Sbjct: 151 AVETFRDFVHAGLIWRELMRAKFGAVARPTETAIDRAITRQTSRASIRLLLSEIIIPAPP 210

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
            +      +   I++                 +++       G+  ++   +L P    +
Sbjct: 211 GQEAEAQALAAEIRNNVRGEGAF---AEAARTYSASSSAERGGRIDWVPLQNLPPTLGPM 267

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
            L  S    ++P      V    +  + +          L         +   A  + ++
Sbjct: 268 LLTLSPGQVSDPVKIPNAVALFQLRGRDESSAPPPEGIELEYAELFLPNDAEFAAELGRI 327

Query: 309 RSNAI 313
            S A 
Sbjct: 328 TSRAD 332



 Score = 40.8 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 20/46 (43%)

Query: 269 YIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            + +C +R +  E   +  L+       I      Y+  LR+NAII
Sbjct: 387 VLMLCARRPVSAEPIDRGRLAQALANQSISASADAYMADLRANAII 432


>gi|157960692|ref|YP_001500726.1| SurA domain-containing protein [Shewanella pealeana ATCC 700345]
 gi|157845692|gb|ABV86191.1| SurA domain [Shewanella pealeana ATCC 700345]
          Length = 434

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/310 (11%), Positives = 101/310 (32%), Gaps = 15/310 (4%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-- 70
           +K        ++   +      +     R+   IN  +I + +++  +  +K    N   
Sbjct: 1   MKRCNQLIFALLTLAMSQTIQAAPEPLDRVTVQINEGIILESEVAGMVKTIKANAANAGQ 60

Query: 71  ------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L    ++ LI+  L+ Q  ++ G+      ++      A+   ++     + +
Sbjct: 61  KLPSDTALRTQVIERLILTRLQLQMADRIGLHIGDLQLDQTIENIAKEQKITVAQMKAQI 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           + +G     +++ L  +    ++ +     +      EI    + +    ++E   +   
Sbjct: 121 ESEGTTFAQYREQLREEITLGEIQRIQVQRRIQVSPQEINNLVKLINEQGLKEVEFQIGH 180

Query: 185 FSIPDNKLQNQGFVQ---KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             I      N   ++   KR     +         +     +S    +  G   Y+  ++
Sbjct: 181 ILIDVPSDANSQQLEAASKRSATVMKRLKDGDDFRSIAIAASSGPKALEGGIWDYMNINE 240

Query: 242 LHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK---AYLSAQNTPTKI 297
           +   F + +      +   P  +  G   I + D R L  +   +    ++  + +P   
Sbjct: 241 MPTLFAEVVGDAKTGDIIGPIKSASGFHIIKVMDARGLQTKEVQEVKSRHILLKPSPILS 300

Query: 298 EKHEAEYVKK 307
           E+     + +
Sbjct: 301 EERAKSMMDR 310



 Score = 78.9 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 84/294 (28%), Gaps = 27/294 (9%)

Query: 49  EVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
           E IT G+I +     ++Q    E+  +    LI E   K+   + G        +    Q
Sbjct: 136 EEITLGEIQRIQVQRRIQVSPQEINNLVK--LINEQGLKEVEFQIGHILIDVPSDANSQQ 193

Query: 109 HARNTGLSAEDFSSFLDKQGIGD----------------NHFKQYLAIQSIWPDVV---- 148
               +  SA       D                        +     + +++ +VV    
Sbjct: 194 LEAASKRSATVMKRLKDGDDFRSIAIAASSGPKALEGGIWDYMNINEMPTLFAEVVGDAK 253

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
             D +    +            + +  +E         +            K + D   +
Sbjct: 254 TGDIIGPIKSASGFHIIKVMDARGLQTKEVQEVKSRHILLKPSPILSEERAKSMMDRFLA 313

Query: 209 RLRL--PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQ 264
           +++    K  +   +++         G+  +   +   P F Q L        + P+ + 
Sbjct: 314 QVKSGEAKFEDLARQYSEDPGSAAKGGELGWADPNIYVPAFSQELNSLEVGAYSEPFRST 373

Query: 265 KGVEYIAICDKRDLGG-EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            G   + + +KR     +              K  +    ++ ++R+ A I  +
Sbjct: 374 HGWHIVQLEEKRTTDATDKFNTNRAHQLIYRRKFNEELQNWLDEMRAEAFIDIF 427


>gi|33603075|ref|NP_890635.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella
           bronchiseptica RB50]
 gi|81714068|sp|Q7WG19|SURA_BORBR RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|33568706|emb|CAE34464.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella
           bronchiseptica RB50]
          Length = 519

 Score =  106 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/352 (9%), Positives = 92/352 (26%), Gaps = 69/352 (19%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--------ELEKIAVQEL 80
           P     S      I   +N +VIT  ++ +   L                 L+K  +Q L
Sbjct: 44  PATPAPSEQFVDGIAAIVNKDVITLREVREASKLASADLQKRGIQVPDERTLQKQVLQRL 103

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I+E L++QE ++ GI  D   V+      A    ++     + ++K G+    +++ L  
Sbjct: 104 IMERLERQEADRMGIRVDEAQVDQAINMIASRNKITPAAMRAEIEKSGVTWEQYRKSLRD 163

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE----------------------- 177
                 + +          + E+ A  +  +                             
Sbjct: 164 DIRMDRLRQRAVDANIIISDAEVDAFLKDQERNPAAAQATRAPAPQQPQPQPRQPAQSGP 223

Query: 178 ---YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKA 234
               L + ++     +       ++K+ +       +     +     +     +  G  
Sbjct: 224 AMLVLAQILVRVPEGSSPDQVAALRKKAEGLLARAKKGDDFASLAAANSDGPEALQGGMM 283

Query: 235 QYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDK------------------ 275
                      F +     S    +    +  G   + + D+                  
Sbjct: 284 GARPLDGWPDLFVKAAGSLSAGQVSGLVQSGNGFHILKVVDRAGGGQPAQAARPAPAPAP 343

Query: 276 ----------------RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
                             +        ++  + +    +    + ++++R  
Sbjct: 344 QQPSSFQEGPSVAAPQGPVRVTQTHARHILIKTSTVMTDDQARQRLEQIRER 395



 Score = 96.3 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 46/137 (33%), Gaps = 2/137 (1%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
               +       + +    Q+  +  E  +    K  +   +++        G   ++  
Sbjct: 368 HARHILIKTSTVMTDDQARQRLEQIRERLQGGAVKFEDMARQYSQDSTAPQGGDLGWVNP 427

Query: 240 SDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAYLSAQNTPTKI 297
            D  P F+  +     N  + P ++  G   I + ++R+    +   +          + 
Sbjct: 428 GDTVPPFEAAMNALQPNEISPPVLSPFGWHLIQVLERREHDVSDEVQRMRARQLLFERRA 487

Query: 298 EKHEAEYVKKLRSNAII 314
                +++++LRS A I
Sbjct: 488 VPAFEDWLEQLRSQAFI 504


>gi|33598180|ref|NP_885823.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella
           parapertussis 12822]
 gi|81713639|sp|Q7W4J5|SURA_BORPA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|33566738|emb|CAE38950.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella
           parapertussis]
          Length = 519

 Score =  106 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/352 (9%), Positives = 93/352 (26%), Gaps = 69/352 (19%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--------ELEKIAVQEL 80
           P     S      I   +N +VIT  ++ +   L                 L+K  +Q L
Sbjct: 44  PATPAPSEQFVDGIAAIVNKDVITLREVREASKLASADLQKRGIQVPDERTLQKQVLQRL 103

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I+E L++QE+++ GI  D   V+      A    ++     + ++K G+    +++ L  
Sbjct: 104 IMERLERQEVDRMGIRVDEAQVDQAINMIASRNKITPAAMRAEIEKSGVTWEQYRKSLRD 163

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE----------------------- 177
                 + +          + E+ A  +  +                             
Sbjct: 164 DIRMDRLRQRAVDANIIISDAEVDAFLKDQERNPAAAQATRAPAPQQPQPQPRQPAQSGP 223

Query: 178 ---YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKA 234
               L + ++     +       ++K+ +       +     +     +     +  G  
Sbjct: 224 AMLVLAQILVRVPEGSSPDQVAALRKKAEGLLARAKKGDDFASLAAANSDGPEALQGGMM 283

Query: 235 QYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDK------------------ 275
                      F +     S    +    +  G   + + D+                  
Sbjct: 284 GARPLDGWPDLFVKAAGSLSAGQVSGLVQSGNGFHILKVVDRAGGGQPAQAARPAPAPAP 343

Query: 276 ----------------RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
                             +        ++  + +    +    + ++++R  
Sbjct: 344 QQPSSFQEGPSVAAPQGPVRVTQTHARHILIKTSTVMTDDQARQRLEQIRER 395



 Score = 96.3 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 46/137 (33%), Gaps = 2/137 (1%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
               +       + +    Q+  +  E  +    K  +   +++        G   ++  
Sbjct: 368 HARHILIKTSTVMTDDQARQRLEQIRERLQGGAVKFEDMARQYSQDSTAPQGGDLGWVNP 427

Query: 240 SDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAYLSAQNTPTKI 297
            D  P F+  +     N  + P ++  G   I + ++R+    +   +          + 
Sbjct: 428 GDTVPPFEAAMNALQPNEISPPVLSPFGWHLIQVLERREHDVSDEVQRMRARQLLFERRA 487

Query: 298 EKHEAEYVKKLRSNAII 314
                +++++LRS A I
Sbjct: 488 VPAFEDWLEQLRSQAFI 504


>gi|315122192|ref|YP_004062681.1| peptidyl-prolyl cis-trans isomerase protein [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495594|gb|ADR52193.1| peptidyl-prolyl cis-trans isomerase protein [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 315

 Score =  106 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 170/303 (56%), Positives = 227/303 (74%), Gaps = 1/303 (0%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
            +    + +  I     Y+S A+SS+I  T+NGE ITDGDISKRIA LKL+KING+L+KI
Sbjct: 12  FSKLLAVCVVLIACFYPYESSAISSQISITVNGEAITDGDISKRIAFLKLRKINGDLKKI 71

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           A QELI E LKKQE E  GI  + N++NYFF Q+ARNTG+SAE+FS  L+  GIG+NHFK
Sbjct: 72  AKQELIAEALKKQESEGFGIILNPNSMNYFFAQYARNTGISAEEFSDMLEHLGIGENHFK 131

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV-REYLIRTVLFSIPDNKLQN 194
           QYLAIQ  W ++V+N F++KY  L ME+P + +        REYL++ ++FS+P NK +N
Sbjct: 132 QYLAIQLAWDEIVRNTFIMKYRGLGMEMPPSIKGRGKNLTVREYLVKKIIFSVPYNKHKN 191

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ 254
           + F+QKRI +AE+SR   P +CN++E+FAS +HDVS+   QY LESDL PQ + LLKK++
Sbjct: 192 EDFIQKRIDEAEKSRFHFPTNCNRVEEFASAMHDVSVSNPQYFLESDLQPQLKILLKKTK 251

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           NNTTN YVT+KGVEYIAIC+ RD+GGE+ALKAY + Q  P K++K++ EY+K LR+NAII
Sbjct: 252 NNTTNTYVTEKGVEYIAICNIRDIGGELALKAYFNTQEIPKKMKKYDEEYMKTLRANAII 311

Query: 315 HYY 317
            +Y
Sbjct: 312 QFY 314


>gi|28897695|ref|NP_797300.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260878350|ref|ZP_05890705.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus
           AN-5034]
 gi|260898294|ref|ZP_05906790.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus
           Peru-466]
 gi|260901515|ref|ZP_05909910.1| SurA N-terminal domain protein [Vibrio parahaemolyticus AQ4037]
 gi|28805908|dbj|BAC59184.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308088424|gb|EFO38119.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus
           Peru-466]
 gi|308092760|gb|EFO42455.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus
           AN-5034]
 gi|308110873|gb|EFO48413.1| SurA N-terminal domain protein [Vibrio parahaemolyticus AQ4037]
          Length = 619

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 42/406 (10%), Positives = 103/406 (25%), Gaps = 92/406 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + SY     ++     +    I  G+     
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYLVNGSNNS-AAKVGNTEIPRGEFEMAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                       K  +  +I + L  Q+ E  G+      V  
Sbjct: 60  QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDAQVRS 119

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN----------- 150
                 Q   N     E + + L + G   + F +Y+  + +   ++             
Sbjct: 120 MILEMPQFQSNGQFDQEIYQASLRRAGFSPDSFAEYMRRELVREQLLTALQSSEFTLPGE 179

Query: 151 ----------------------DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                 +F  K    + EI A  +   +   R   ++     + 
Sbjct: 180 VQSQGKLFTQTRDIRTVTIDLAEFAKKVELTDEEIQAYYKANPDNFTRPEQVKVSYVELS 239

Query: 189 DNKLQNQGFV---------------------------------QKRIKDAEESRLRLPKD 215
              L+ Q  V                                 + + +   +        
Sbjct: 240 AEALKKQIQVTDEDVKKYYDEHLDKYSSEEQRRVAHILVEGDDEAKAQAILDELNAGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               ++ +       + G   ++    + P F+      K+  + +    +  G   I +
Sbjct: 300 AAVAQEKSDDFGSAENGGDLGWIERDVMDPAFEEAAFALKNPGDMSGLVKSDFGYHIIKL 359

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + +D        + A +  +    K      E   +L   A   Y
Sbjct: 360 EELKDAVAKPFDEVAAEIKQELVDQKAVDQFYELQNELERVAF-EY 404


>gi|77463460|ref|YP_352964.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides 2.4.1]
 gi|77387878|gb|ABA79063.1| Probable PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides 2.4.1]
          Length = 435

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 107/305 (35%), Gaps = 7/305 (2%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRT---TINGEVITDGDISKRIALLKLQKIN 69
           +K   ++ + ++       +    A++  +      +N  VIT+ +  +R+  L +    
Sbjct: 31  MKTFVSHCLALVVAAGLTFTSAPGALAQNLFAPRLVVNDRVITNYEFEQRVRFLTILGAT 90

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
           G++EK A+  LI + ++    E++G+      +     + A    LSAE F++ L K G+
Sbjct: 91  GDVEKQAMDALIEDKIRFDAAEQAGLKATEEQIKEGMEEFAGRANLSAEQFAAELGKAGV 150

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
               F+ ++    IW ++++  F       E  I     +  +      L+  ++   P 
Sbjct: 151 AVETFRDFVHAGLIWRELMRAKFGAVARPTETAIDRAITRQTSRASIRLLLSEIIIPAPP 210

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
            +      +   I+                  +++       G+  ++   +L P    +
Sbjct: 211 GQEAEAQALAAEIRRNVRGEGAF---AEAARTYSASSSAERGGRIDWVPLQNLPPTLGPM 267

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
            L  S    ++P      V    +  + +          L         +   A  + ++
Sbjct: 268 LLTLSPGQVSDPVKIPNAVALFQLRGRDESSAPPPEGIELEYAELFLPNDAEFAAELGRI 327

Query: 309 RSNAI 313
            S A 
Sbjct: 328 TSRAD 332



 Score = 40.8 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 20/46 (43%)

Query: 269 YIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            + +C +R +  E   +  L+       I      Y+  LR+NAII
Sbjct: 387 VLMLCARRPVSAEPIDRGRLAQALANQSISASADAYMADLRANAII 432


>gi|253575648|ref|ZP_04852984.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251844986|gb|EES72998.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 398

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 93/276 (33%), Gaps = 26/276 (9%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             T+NG  IT   + + +A            + A+  LI + L  QE  K+ IT     V
Sbjct: 134 VATVNGVEITKDRLYEELA--------ANGGEQALTNLINQELVNQEAAKNNITITDADV 185

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
           +     +    G S E  +  L++ G+  +   + + ++     +++     +    + +
Sbjct: 186 DAEIETYKTQFG-SEEALNQALEQYGMTMDDLLKQVEMELKLTKLLE----PQINVTDEQ 240

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +    +  K+       +RT +              ++  KD  +            +  
Sbjct: 241 VKETFETYKDSFNTPEQVRTSVIL---------VATEEEAKDIVKQLKEGADFAELAKSK 291

Query: 223 A-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL-- 278
           +         G   +    ++    +    K ++   + P  T +G + I + DK++   
Sbjct: 292 SLDTATKDQGGDTDFFARGEMEEAVEEAAFKLAKGEISEPVKTSEGYQVIKVTDKKEAHT 351

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                 K  +       ++      +++ +RS A I
Sbjct: 352 ATLEEKKDEIRKSLISQQVSSMSGAWLEDVRSKAKI 387


>gi|297183681|gb|ADI19806.1| parvulin-like peptidyl-prolyl isomerase [uncultured alpha
           proteobacterium EB000_37G09]
          Length = 288

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 40/313 (12%), Positives = 86/313 (27%), Gaps = 54/313 (17%)

Query: 13  IKLLTTYFVLIIF-----CIVPIVSYKSWAMSSRI-RTTINGEVITDGDISKRIALLKLQ 66
           +  + ++    +            S +     ++I    +NGE I   ++ +    L  +
Sbjct: 1   MSFIRSFCCAALLVSSPIIFATTSSAQENKPENKITVADVNGEAIYLEEVMRLAEKLPTE 60

Query: 67  KINGELEKI---AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
                LE      V ++I   L      +SG++ +                         
Sbjct: 61  YRQRPLESYFGGLVDDVIDSRLAAVAGAESGLSEN------------------------- 95

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                 G +   +  A++ +    +            +          N +  E   R +
Sbjct: 96  -----PGVSRLMEVAAMRVLAEAWIAEQVNKAITEDALTATYKLYIADNGSREEVKARHI 150

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
           L              +   +   E            +  ++     + G   Y     + 
Sbjct: 151 LVPE-----------EATARAIIEKLTGGADFAEIAKTDSTGPSGPNGGDLGYFARGAMV 199

Query: 244 PQFQNLLKK-SQNNTT-NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE 301
           P F+    +    + T  P  TQ G   I + DKR           +  Q     + +  
Sbjct: 200 PTFEAAAFELEPGSFTPEPVQTQFGWHIIKVEDKRVATP--PSFEEMVPQLRQNLLNQTL 257

Query: 302 AEYVKKLRSNAII 314
              ++KLR++A I
Sbjct: 258 GRILEKLRASAQI 270


>gi|332558337|ref|ZP_08412659.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides WS8N]
 gi|332276049|gb|EGJ21364.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides WS8N]
          Length = 405

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 107/305 (35%), Gaps = 7/305 (2%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRT---TINGEVITDGDISKRIALLKLQKIN 69
           +K   ++ + ++       +    A++  +      +N  VIT+ +  +R+  L +    
Sbjct: 1   MKTFVSHCLALVVAAGLTFTSAPGALAQNLFAPRLVVNDRVITNYEFEQRVRFLTILGAT 60

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
           G++EK A+  LI + ++    E++G+      +     + A    LSAE F++ L K G+
Sbjct: 61  GDVEKQAMDALIEDKIRFDAAEQAGLKATEEQIKEGMEEFAGRANLSAEQFAAELGKAGV 120

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
               F+ ++    IW ++++  F       E  I     +  +      L+  ++   P 
Sbjct: 121 AVETFRDFVHAGLIWRELMRAKFGAVARPTETAIDRAITRQTSRASIRLLLSEIIIPAPP 180

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
            +      +   I+                  +++       G+  ++   +L P    +
Sbjct: 181 GQEAEAQALAAEIRRNVRGEGAF---AEAARTYSASSSAERGGRIDWVPLQNLPPTLGPM 237

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
            L  S    ++P      V    +  + +          L         +   A  + ++
Sbjct: 238 LLTLSPGQVSDPVKIPNAVALFQLRGRDESSAPPPEGIELEYAELFLPNDAEFAAELGRI 297

Query: 309 RSNAI 313
            S A 
Sbjct: 298 TSRAD 302



 Score = 40.8 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 20/46 (43%)

Query: 269 YIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            + +C +R +  E   +  L+       I      Y+  LR+NAII
Sbjct: 357 VLMLCARRPVSAEPIDRGRLAQALANQSISASADAYMADLRANAII 402


>gi|295098567|emb|CBK87657.1| Parvulin-like peptidyl-prolyl isomerase [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 428

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 36/311 (11%), Positives = 104/311 (33%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGEL 72
           +L+   +V   S+ +  +  ++   +N  V+ + D+   +  +KL           +  L
Sbjct: 7   LLLGVAMVANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMKSVKLNSGEAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+T     ++      A+   ++ +   S L   GI   
Sbjct: 67  RHQILERLIMDQIVLQMGQKMGVTISDEQLDQAIANIAKQNNITPDQMRSRLAYDGISYA 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP---ANKQKMKNITVREYLIRTVLFSIPD 189
            ++  +  + +  +V  N+   +   L  E+           + +    L   ++    +
Sbjct: 127 TYRNQIRKEMLISEVRNNEVRRRVTILPQEVDALAKQVGNQNDASTELNLSHILIPLPEN 186

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                    + + +   E              +++    +  G+  +    +L   F   
Sbjct: 187 PTSDQAAEAESQARAIVEQARNGDDFGKLAITYSADQQALKGGQMGWGRIQELPSLFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   +      
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQNISVTEVHARHILLKPSPIMTDDQARAK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQI--AADIK 315



 Score = 86.3 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 90/288 (31%), Gaps = 25/288 (8%)

Query: 47  NGEV-----ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           N EV     I   ++      +  Q             L    +   E   S    ++ +
Sbjct: 143 NNEVRRRVTILPQEVDALAKQVGNQNDASTELN-----LSHILIPLPENPTSDQAAEAES 197

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
                V+ ARN     +   ++   Q         +  IQ +     +            
Sbjct: 198 QARAIVEQARNGDDFGKLAITYSADQQALKGGQMGWGRIQELPSLFAQALSTAKKGDIVG 257

Query: 152 -FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
                 G   +++   + + +NI+V E   R +L         +Q    K  + A + + 
Sbjct: 258 PIRSGVGFHILKVNDLRGQSQNISVTEVHARHILLKPSPIMTDDQA-RAKLEQIAADIKS 316

Query: 211 RLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVE 268
                    ++F+         G   +       P F++  +K ++   + P  +  G  
Sbjct: 317 GKTTFDKAAKEFSQDPGSANQGGDLGWAAADIYDPAFRDALMKLNKGQMSPPVHSSFGWH 376

Query: 269 YIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            I + D R++   + A K          K  +  A ++++ R++A + 
Sbjct: 377 LIQLMDTRNVDKTDAAQKDRAYRMLFNRKFSEEAATWMQEQRASAYVK 424


>gi|317050626|ref|YP_004111742.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurispirillum
           indicum S5]
 gi|316945710|gb|ADU65186.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurispirillum
           indicum S5]
          Length = 319

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 40/318 (12%), Positives = 103/318 (32%), Gaps = 19/318 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K +     +++       +  +  +   I   +NG  IT  ++ +       +   G  
Sbjct: 1   MKKIGFSLFIVLCGAALSAALSAATLVDGIAAVVNGVPITIQEVRQANKEHIERATRGLA 60

Query: 73  EKIAVQ-----------ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
           ++ A +           + + + L +    ++ I   +  V     Q A N  +S     
Sbjct: 61  DEQAREATMQMLLEGTHQKVEQMLLEDYGRRNRIFISAQQVEEAINQVAANNNVSRSALE 120

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
           S L  +GI    +++ + +Q +    +      +    E+E+ +     +    R     
Sbjct: 121 SMLADEGISMESYRRDIRVQLLVMQ-IGQKLSQEISVSELEVVSA--FREGRFQRIPYAD 177

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
                I  +   +   ++   +  E       +      +++   +    G  + +    
Sbjct: 178 VGHVLIALDGKSDDQAIRIAERLHERIISGDIEFEEAARQYSEGPNAAEGGLMKDVRRGR 237

Query: 242 LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICD---KRDLGGEIALKAYLSAQNTPTKIE 298
           L  +    +   +   T    +  G   + + D    R++  E   +    A     K E
Sbjct: 238 LLRELDQAIFSMEKGQTTLVRSSVGYHILHLYDLGFNREMSDEDFSRT--RAALLREKQE 295

Query: 299 KHEAEYVKKLRSNAIIHY 316
           +     + +LR +A+I Y
Sbjct: 296 RRLQGLMDELRDSAVIQY 313


>gi|50085462|ref|YP_046972.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. ADP1]
 gi|49531438|emb|CAG69150.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. ADP1]
          Length = 451

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 36/314 (11%), Positives = 110/314 (35%), Gaps = 16/314 (5%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAM-SSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           K L  +F      +V   S +S+A  +  +   ++  VI   D+ + +A  + Q    + 
Sbjct: 9   KYLKQFFKTTALALVVSSSMQSFAAPTDEVVAIVDNSVILKSDLEQGVAEAQHQLEAQKK 68

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS--AEDFSS 122
                  L+   + +LI+   + +++++ GI  D NT+N   ++ A  +G+   +     
Sbjct: 69  TVPPLNYLQLQVLDQLILRQAQLEQVKRYGIKPDENTLNDAVLKVASQSGIKSLSAFQQK 128

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
                       +  +        + +   M +    + ++    +  +   +    +  
Sbjct: 129 LDAIAPGTYASLRNRIGEDLAINRLRQQQVMSRIKISDQDVANFLKSPQGQAMLGSQVHV 188

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
           +   I      +   +Q   +  +++           +KF++K   V      Y   ++L
Sbjct: 189 IHARISAQSDVDPQQLQSVAQQVKQALNESNDITAISKKFSTKDIKVEGADMGYRDLAEL 248

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL----KAYLSAQNTPTKI 297
             +    +       TT+    + G+  + + ++++   +  +      ++  Q +    
Sbjct: 249 PSELAARVSPLQAGQTTDLINVRDGIHVLKLIERKNSEQKAIVTQYQTRHILIQPSEVMS 308

Query: 298 EKHEAEYVKKLRSN 311
            +   + +  + + 
Sbjct: 309 AEMAKQTIDSIYNR 322



 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 14/150 (9%), Positives = 48/150 (32%), Gaps = 3/150 (2%)

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HD 228
                      +T    I  +++ +    ++ I                   +++     
Sbjct: 284 NSEQKAIVTQYQTRHILIQPSEVMSAEMAKQTIDSIYNRLKAGEDFTTLAATYSADTGSA 343

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGE-IALKA 286
              G   ++    + P+F++ +K +     + P+ TQ G   + +   R+        + 
Sbjct: 344 RDGGSLGWVTPGSMVPEFESKMKNTPVGQISEPFQTQFGWHILQVTATREKDMTHEYQER 403

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                    + +     +++++R++A +  
Sbjct: 404 MARQVLGERQFDSELDSWLREVRAHAFVQI 433


>gi|330881719|gb|EGH15868.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 256

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 77/240 (32%), Gaps = 11/240 (4%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   ++    + +      +   ++ +VI    + +R+  ++               L
Sbjct: 14  LMLGALLLSGAVHAAVQPLDSVVAIVDNDVIMKSQMDQRVREVQQTIAKRGSGVPPAEAL 73

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +   +  LI+E L+ Q  E+SGI    + +N      A+   +S E F + L   G+  N
Sbjct: 74  QPQVLDRLILENLQLQMGERSGIRVSDDELNQAIGTIAQRNNMSVEQFRAALAHDGLSYN 133

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             ++ +  + I   V +     +    + E+       +               I     
Sbjct: 134 DAREQVRREMIISRVRQRRVAERIQVSQQEVKNFLASDQGKAQLSEKFHLANILIATPDS 193

Query: 193 QNQGFVQKRIKD---AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
            +   +Q          +   +           +S  + +  G   +   + L P F  +
Sbjct: 194 ASSDAIQAAAVKAKGIYDQLKKGADFTRLAATTSSSENALEGGDMGWRKAAQLPPPFGEM 253


>gi|302383690|ref|YP_003819513.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302194318|gb|ADL01890.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 450

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 98/260 (37%), Gaps = 10/260 (3%)

Query: 26  CIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI-------ALLKLQKINGELEKIAVQ 78
              P+     + M+  I  T+N +VIT  D+ +R+        +   ++    +++ A+Q
Sbjct: 48  VTAPLPPQPEFKMADGIVATVNDQVITGFDLRQRMLTTIAMSQVQPTEENIPAIQQQALQ 107

Query: 79  ELIVETLKKQEIEKSGI-TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY 137
            LI E L+  EI K          V+    + A   G + + +  FL   GI   + ++ 
Sbjct: 108 GLIEERLQAAEIAKFETLKITDAEVDEEIARMAEEAGTTPQAYVEFLTSGGIRAENLREQ 167

Query: 138 LAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGF 197
           L  +  W ++V   F  +      ++    +++     +   +   ++         Q  
Sbjct: 168 LRTEIGWRELVGGRFNSRSRVSRAQVQQALRQVTETASKPQYLVGEIYLEAARVGGQQQA 227

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNN 256
           +    +  ++   +         +F++       G A +L++  + P+ Q  L+      
Sbjct: 228 MNGAEQLVQQMV-QGAPFQAVARQFSAAPSAARGGDAGWLVQGTVQPELQAALEALEVGQ 286

Query: 257 TTNPYVTQKGVEYIAICDKR 276
            + P     GV  I + DKR
Sbjct: 287 LSRPIPVSGGVYIIYMRDKR 306



 Score = 73.2 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/268 (11%), Positives = 80/268 (29%), Gaps = 10/268 (3%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIE--KSGITFDSNTVNYFFVQ 108
           ++   + + +  +       +        L+ E   +      +      +  +    VQ
Sbjct: 188 VSRAQVQQALRQVTETASKPQY-------LVGEIYLEAARVGGQQQAMNGAEQLVQQMVQ 240

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
            A    ++ +  ++    +G       Q      +   +   +       + +       
Sbjct: 241 GAPFQAVARQFSAAPSAARGGDAGWLVQGTVQPELQAALEALEVGQLSRPIPVSGGVYII 300

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
            M++           L        +                LR    C+ + +  S    
Sbjct: 301 YMRDKRSGAATNLVSLKQAMIELPETAPPADVAAATTRLQTLRGSLTCDNILQRTSSEAG 360

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY 287
           +          ++L PQFQ + +     + ++   T  GV  +A+C +R  G ++     
Sbjct: 361 LLGSDLGEADVANLAPQFQQVARSAEIGSVSDVVRTPLGVHLVAVCGRRAGGADVPTARE 420

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +  +     +      Y++ LR++A+I 
Sbjct: 421 IEGRLQNQNLAMLARRYLRDLRADALIE 448


>gi|206581089|ref|YP_002240483.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Klebsiella
           pneumoniae 342]
 gi|288937183|ref|YP_003441242.1| peptidylprolyl isomerase [Klebsiella variicola At-22]
 gi|290512604|ref|ZP_06551970.1| peptidyl-prolyl cis-trans isomerase SurA [Klebsiella sp. 1_1_55]
 gi|206570147|gb|ACI11923.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Klebsiella
           pneumoniae 342]
 gi|288891892|gb|ADC60210.1| Peptidylprolyl isomerase [Klebsiella variicola At-22]
 gi|289774945|gb|EFD82947.1| peptidyl-prolyl cis-trans isomerase SurA [Klebsiella sp. 1_1_55]
 gi|294488615|gb|ADE88150.1| peptidyl-prolyl cis-trans isomerase [Pantoea agglomerans]
          Length = 428

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 36/311 (11%), Positives = 105/311 (33%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+    + ++      A+   ++ +   S L  +GI  N
Sbjct: 67  RHQILERLIMDQIVLQLGQKMGVKVSDDQLDQAIANIAKQNNMTMDQMRSRLAYEGINYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP---ANKQKMKNITVREYLIRTVLFSIPD 189
            ++  +  + +  +V  N+   +   L  E+           + +    L   ++    +
Sbjct: 127 TYRSQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLAEN 186

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                    Q++     E              +++    +  G+  +    +L   F   
Sbjct: 187 PTADEVAAAQEQANAIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   +      
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQI--AADIK 315



 Score = 84.0 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 89/287 (31%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q  +       +  L    +   E   +     +    
Sbjct: 143 NNEVRRRITV--LPQEVEALAKQIGDQNDASTELN-LSHILIPLAENPTADEVAAAQEQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V+ ARN     +   ++   Q         +  IQ +     +              
Sbjct: 200 NAIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   +   +NI+V E   R +L          Q    K  + A + +   
Sbjct: 260 RSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQ-AKLEQIAADIKSGK 318

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYI 270
                  + F+         G   +       P F++  ++ ++  T+ P  +  G   I
Sbjct: 319 TTFAKAAKAFSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLI 378

Query: 271 AICDKRDLG-GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R +   + A K          K  +  A ++++ R++A +  
Sbjct: 379 ELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKI 425


>gi|33594222|ref|NP_881866.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella pertussis
           Tohama I]
 gi|81713229|sp|Q7VU12|SURA_BORPE RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|33564297|emb|CAE43595.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella pertussis
           Tohama I]
 gi|332383636|gb|AEE68483.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella pertussis
           CS]
          Length = 519

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 35/352 (9%), Positives = 92/352 (26%), Gaps = 69/352 (19%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--------ELEKIAVQEL 80
           P     S      I   +N +VIT  ++ +   L                 L+K  +Q L
Sbjct: 44  PATPAPSEQFVDGIAAIVNKDVITLREVREASKLASADLQKRGIQVPDERTLQKQVLQRL 103

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I+E L++QE ++ GI  D   V+      A    ++     + ++K G+    +++ L  
Sbjct: 104 IMERLERQEADRMGIRVDEAQVDQAINMIASRNKITPAAMRAEIEKSGVTWEQYRKSLRD 163

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE----------------------- 177
                 + +          + E+ A  +  +                             
Sbjct: 164 DIRMDRLRQRAVDANIIISDAEVDAFLKDQERNPAAAQATRAPAPQQPQPQPRQPAQSGP 223

Query: 178 ---YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKA 234
               L + ++     +       ++K+ +       +     +     +     +  G  
Sbjct: 224 AMLVLAQILVRVPEGSSPDQVAALRKKAEGLLARAKKGDDFASLAAANSDGPEALQGGMM 283

Query: 235 QYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDK------------------ 275
                      F +     S    +    +  G   + + D+                  
Sbjct: 284 GARPLDGWPDLFVKAAGSLSAGQVSGLVQSGNGFHILKVVDRAGGGQPAQAARPAPAPAP 343

Query: 276 ----------------RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
                             +        ++  + +    +    + ++++R  
Sbjct: 344 QQPSSFQEGPSVAAPQGPVRVTQTHARHILIKTSTVMTDDQARQRLEQIRER 395



 Score = 94.0 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 46/137 (33%), Gaps = 2/137 (1%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
               +       + +    Q+  +  E  +    K  +   +++        G   ++  
Sbjct: 368 HARHILIKTSTVMTDDQARQRLEQIRERLQGGAVKFEDMARQYSQDSTAPQGGDLGWVNP 427

Query: 240 SDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAYLSAQNTPTKI 297
            D  P F+  +     N  + P ++  G   I + ++R+    +   +          + 
Sbjct: 428 GDTVPPFEAAMNALQPNEISPPMLSPFGWHLIQVLERREHDVSDEVQRMRARQLLFERRA 487

Query: 298 EKHEAEYVKKLRSNAII 314
                +++++LRS A I
Sbjct: 488 VPAFEDWLEQLRSQAFI 504


>gi|308275078|emb|CBX31677.1| hypothetical protein N47_E51890 [uncultured Desulfobacterium sp.]
          Length = 316

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 30/291 (10%), Positives = 83/291 (28%), Gaps = 14/291 (4%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQ----------KINGELEKIAVQELIVETLKKQE 89
                 +NG  +   ++ + I  ++                 ++K  ++ LI + +  QE
Sbjct: 14  DEKAAVVNGMPVYREELDEEIIKIQKAILGYGKPLTVSKVKSVQKDVLESLIRQEILYQE 73

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
             KSGI  D  +++              +  ++   +    +    + L    +   + +
Sbjct: 74  SLKSGIKPDEKSIDKEIKTLIGQFKSETDYKNALNRRNISPEMLRSRLLKNNVLQQYIGR 133

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE-ES 208
                   + ++      +        +  +  +           +   ++R  +   + 
Sbjct: 134 LAEKTSVSDNDIIEYYQGRIELFKQPLQVRVSHIFIRTDPKWDAPRKQEERRKAEQILKD 193

Query: 209 RLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGV 267
             +         + +        G   Y+    L  + ++ + K      +N   T  G 
Sbjct: 194 IKQGKDFAVIAGEHSDGPTKTKGGDLGYIKMGQLDNKLEDAVFKLKTGELSNIVETDNGF 253

Query: 268 EYIAICDKRDLGG--EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                 DK+         +K  +       K ++   +   KLR  A +  
Sbjct: 254 HIFKATDKKPETVLSYEDVKEKIRQFLHEEKAKREADQQAGKLREKATVEI 304


>gi|56697307|ref|YP_167673.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Ruegeria pomeroyi DSS-3]
 gi|56679044|gb|AAV95710.1| PPIC-type PPIASE domain [Ruegeria pomeroyi DSS-3]
          Length = 412

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 109/289 (37%), Gaps = 10/289 (3%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T      +++    + +     P+ +   ++ + R    +N  VIT  ++ +RI
Sbjct: 1   MQQNLTTLSRCLARMMGAAALTLTLAGGPVAAQSLFSPAIR----VNQGVITHFELEQRI 56

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
            L+++ +I G+ +K A + LI E LK Q +E++GI      V       A    LS ++F
Sbjct: 57  RLMEVLRIPGDPQKDARRSLIEEALKMQAVEEAGIEVAPEDVQLGIDDFAARARLSTDEF 116

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
            + L  +G+     + +++ Q  W D V   F+ +      EI           ++  L 
Sbjct: 117 LAALANEGVSAETVRDFVSKQMAWRDYVSARFLARARPTPDEIDRALGLGGGGGLQVLLS 176

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
             ++   P    Q     Q+       +        +   + ++     + G+  ++  +
Sbjct: 177 EIIIPITPQTVDQVDEVAQQ-----IAALTSYEAFSSAAIQVSAAETRENGGRMPWIPLA 231

Query: 241 DLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
            L P  Q ++ +      ++P      V    +   R+        A +
Sbjct: 232 QLPPALQPVILELEPGEISDPITLPNAVALFQMRGLREAAVGTPRYAAI 280



 Score = 36.2 bits (81), Expect = 5.9,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKG---VEYIAICDKRDLGGEIALKAYLSAQNTP 294
             +++       L K     T+  +T+     + ++ +C +    G  A +  ++   T 
Sbjct: 330 KPAEIPQDIALELAKLDPGETSLALTRNNGQTLLFLMMCTRTRDLGGDASREDVANALTQ 389

Query: 295 TKIEKHEAEYVKKLRSNAII 314
            +++      V++LR++AII
Sbjct: 390 QRLQTLAESLVEQLRADAII 409


>gi|83953611|ref|ZP_00962332.1| PPIC-type PPIASE domain protein [Sulfitobacter sp. NAS-14.1]
 gi|83841556|gb|EAP80725.1| PPIC-type PPIASE domain protein [Sulfitobacter sp. NAS-14.1]
          Length = 405

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 99/270 (36%), Gaps = 6/270 (2%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           + ++   +   +  S          +N  V+T+ ++ +R   L++    G   + A+  L
Sbjct: 10  IAVLGLGLMTAAPVSAQNLFAPVAKVNESVVTEFEVQQRQRFLEVLNAPGATREGALTSL 69

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I E L+ + + ++GI      +     + A    LS E+F+  L + G+    F+ ++  
Sbjct: 70  IDERLRNEAVAEAGIELTPQGIEDSLAEFASRADLSTEEFTQALGQSGVSRETFRDFVVN 129

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
              W ++V+  +  +    + EI     + +   VR  +   ++ + P    +     ++
Sbjct: 130 SVGWRELVRARYASRVQITDAEINRALGETQGSGVRVLVSEIIIPAPPQQAARVNALAEQ 189

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTN 259
                        +  N   ++++       G+  +   +DL P  Q L+   +    T+
Sbjct: 190 -----ISQSKSTAEFSNYASRYSATASRGRGGRLPWQNLTDLPPSLQPLILNLAPGEVTD 244

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLS 289
           P      V    + D  +        + + 
Sbjct: 245 PLPIPNAVALFQLRDIEETSVTAPTYSEIE 274



 Score = 38.9 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 7/64 (10%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 253 SQNNTTNPYVTQKG--VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
                +       G  +  + +C +       A +  ++      ++  +  + +++LR+
Sbjct: 339 DTGEVSTTLTRANGQTLMLLMMCGRTAAANASASREDVTNALRQERLTGYAEQLLEQLRA 398

Query: 311 NAII 314
           +A I
Sbjct: 399 DARI 402


>gi|306820710|ref|ZP_07454338.1| peptidyl-prolyl cis-trans isomerase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551320|gb|EFM39283.1| peptidyl-prolyl cis-trans isomerase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 382

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 49/340 (14%), Positives = 110/340 (32%), Gaps = 45/340 (13%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +  ++K+L    +     +             +   +I+ + IT GD  K +A+ KLQ  
Sbjct: 1   MKRYLKILGVGLLSFTLLV------GCSDKGDKTLASIDNQKITYGDYLKEMAMYKLQVD 54

Query: 69  N---------------------------GELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
                                          +   ++ +I + + ++E++   +T D ++
Sbjct: 55  TTFASNPKFWEEKVPADQSVSGKETTVLENFKTELLENMIEDKIIEKEVKNLSLTVDDSS 114

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
           V+    Q+ +    + +    F D +   +           +    ++ DF  K    + 
Sbjct: 115 VDANVKQYTQILESAPDIKKYFADNKLDTNFIKAMSTKD--LVKAALEKDFTDKNQVTQA 172

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKL------QNQGFVQKRIKDAEESRLRLPKD 215
           EI A  +K K     E +  + +     N              +K+I +  E  +     
Sbjct: 173 EIDAYYEKNKAEFSNEQIRASHILIKTVNYDLSDMPKDKVEAAKKQIDEIYEKAIAGEDF 232

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICD 274
               +++       + G   Y     +  +F +     +    + P  TQ G   I + D
Sbjct: 233 AELAKQYGQDGTKDTGGDLGYFTRDRMVKEFSDAAFALNIGEISKPVKTQWGYHIIKLVD 292

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           K+    ++A                   +Y+K+L+  A I
Sbjct: 293 KKSENVDVAQAKEYVKSLLQK---NKFNDYIKELKEKAKI 329


>gi|300724849|ref|YP_003714174.1| peptidyl-prolyl cis/trans isomerase [Xenorhabdus nematophila ATCC
           19061]
 gi|297631391|emb|CBJ92088.1| peptidyl-prolyl cis-trans isomerase (PPIase), involved in
           maturation of outer membrane proteins [Xenorhabdus
           nematophila ATCC 19061]
          Length = 434

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 43/308 (13%), Positives = 101/308 (32%), Gaps = 16/308 (5%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI--------NGE 71
            +L +   V  V+  +  + +++   +N  V+ + D+   +  ++L              
Sbjct: 7   LILGLMFSVNSVAMAAPQVLNKVAAVVNNGVVLESDVDSLLQSVELNAKHAGQQIPDEKA 66

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           L    ++ LI++ +  Q   +  IT    T++      A    LS       L   GI  
Sbjct: 67  LRHQILERLIMDDIVLQMANRMQITIPDQTLDSAIAGIAAQNHLSLAQLKQNLVADGISF 126

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
           + ++  +  +    +V  N+   +   L  E+ +   +++    ++  +      IP  +
Sbjct: 127 DTYRNQIRKEMTISEVRNNEVRRRITILPQEVDSLTNQLEGQNNQDTELNISHILIPLPE 186

Query: 192 LQNQGFVQKRIKDAEESRLRLP---KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-Q 247
             NQ  V+K           L            ++     +  G   +    +L   F +
Sbjct: 187 NPNQAQVEKAETTVRNILSELKNGVDFGKLAITYSGDTQALKGGNMGWNKLQELPSLFTE 246

Query: 248 NLLKKSQNNTTNPYVTQKGVEYIAICDK----RDLGGEIALKAYLSAQNTPTKIEKHEAE 303
            L    +     P  +  G   + + D     R +        ++  + +P   +     
Sbjct: 247 QLQSAYKGQIIGPIRSGVGFHILKVNDTRGGNRSVAVTEVNARHILLKTSPVMNDDQARS 306

Query: 304 YVKKLRSN 311
            + KLR  
Sbjct: 307 ELMKLREE 314



 Score = 85.5 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 86/289 (29%), Gaps = 25/289 (8%)

Query: 47  NGEV-----ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           N EV     I   ++      L+ Q        I+        +   E         + T
Sbjct: 144 NNEVRRRITILPQEVDSLTNQLEGQNNQDTELNIS-----HILIPLPENPNQAQVEKAET 198

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
                +   +N     +   ++             +  +Q +     +            
Sbjct: 199 TVRNILSELKNGVDFGKLAITYSGDTQALKGGNMGWNKLQELPSLFTEQLQSAYKGQIIG 258

Query: 152 -FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
                 G   +++   +   +++ V E   R +L         +Q    + +K  EE   
Sbjct: 259 PIRSGVGFHILKVNDTRGGNRSVAVTEVNARHILLKTSPVMNDDQA-RSELMKLREEILS 317

Query: 211 RLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVE 268
                    ++++      +  G+  + L S   P F++   K  +   + P  +  G  
Sbjct: 318 GKTTFEKAAKEYSEDPGSAMRGGELGWNLPSAYDPAFRDALTKLQKGEISQPVHSAFGWH 377

Query: 269 YIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            I + D R +   + A K          K  +    ++++LR++A +  
Sbjct: 378 VIQLLDSRKVDKTDAAQKDRAYRLLFNRKFNEEAQSWMQELRASAYVKI 426


>gi|163759891|ref|ZP_02166975.1| putative foldase/peptidyl-prolyl cis-trans isomerase [Hoeflea
           phototrophica DFL-43]
 gi|162282849|gb|EDQ33136.1| putative foldase/peptidyl-prolyl cis-trans isomerase [Hoeflea
           phototrophica DFL-43]
          Length = 283

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 32/308 (10%), Positives = 82/308 (26%), Gaps = 49/308 (15%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ---KIN 69
           +  L    +      +P   +   A    +   + G  I   ++    A L  Q      
Sbjct: 3   LSQLAATLLFTSIAFLPAKGFAQEAD-DPVVAMVGGVEIRTSELQMAEADLDPQFERLPA 61

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
            +    A+  +I      ++ E   +                                  
Sbjct: 62  EQRRVAALAAVIDIKALARKAEAEELDQTEEFKR-------------------------- 95

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                  +   +++   + ++  +    + +++   +++        E   R +L    D
Sbjct: 96  ----LMAFQRDRALHNVLFRSGVVESISDADVKARYDQEVAATQAEEEISARHILVETED 151

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                   +                     ++ ++     + G   Y  +  + P+F+  
Sbjct: 152 EAKALITELDA-----------GKDFAELAKEKSTGPSAGNGGDLGYFTKGRMVPEFEAA 200

Query: 250 LKKSQNNTTN--PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
               +       P  TQ G   I + D+RD          ++ Q     + +   E +++
Sbjct: 201 AFALEKGQYGKEPVKTQFGWHVIKVEDRRDAAP--PPFEQVADQIRQVLLRERYGELIRE 258

Query: 308 LRSNAIIH 315
            R N  I 
Sbjct: 259 ARDNVDIE 266


>gi|152968631|ref|YP_001333740.1| peptidyl-prolyl cis-trans isomerase SurA [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238893026|ref|YP_002917760.1| peptidyl-prolyl cis-trans isomerase SurA [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330009278|ref|ZP_08306494.1| PPIC-type PPIASE domain protein [Klebsiella sp. MS 92-3]
 gi|150953480|gb|ABR75510.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238545342|dbj|BAH61693.1| peptidyl-prolyl cis-trans isomerase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|238774029|dbj|BAH66526.1| peptidyl-prolyl cis-trans isomerase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238774061|dbj|BAH66557.1| peptidyl-prolyl cis-trans isomerase [Klebsiella pneumoniae]
 gi|328534855|gb|EGF61397.1| PPIC-type PPIASE domain protein [Klebsiella sp. MS 92-3]
          Length = 428

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 36/311 (11%), Positives = 105/311 (33%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+    + ++      A+   ++ +   S L  +GI  N
Sbjct: 67  RHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP---ANKQKMKNITVREYLIRTVLFSIPD 189
            ++  +  + +  +V  N+   +   L  E+           + +    L   ++    +
Sbjct: 127 TYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPEN 186

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                    Q++     E              +++    +  G+  +    +L   F   
Sbjct: 187 PTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   +      
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQI--AAEIK 315



 Score = 82.8 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 89/287 (31%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q  +       +  L    +   E   S     +    
Sbjct: 143 NNEVRRRITV--LPQEVEALAKQIGDQNDASTELN-LSHILIPLPENPTSDEVAAAQEQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V+ ARN     +   ++   Q         +  IQ +     +              
Sbjct: 200 NSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   +   +NI+V E   R +L          Q    K  + A E +   
Sbjct: 260 RSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQ-AKLEQIAAEIKSGK 318

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYI 270
                  + ++         G   +       P F++  ++ ++  T+ P  +  G   I
Sbjct: 319 ITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLI 378

Query: 271 AICDKRDLG-GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R +   + A K          K  +  A ++++ R++A +  
Sbjct: 379 ELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKI 425


>gi|85712920|ref|ZP_01043960.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina
           baltica OS145]
 gi|85693226|gb|EAQ31184.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina
           baltica OS145]
          Length = 624

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 34/401 (8%), Positives = 96/401 (23%), Gaps = 94/401 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++      F        +++ F +  + SY     ++     +N   I+   + +  
Sbjct: 1   MLERIREGSQSFTAKAVLVLIILTFALAGVGSY-VTGGATTTVAEVNDAEISQQALERAY 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     +    +++LI + L  Q     G+   +  V  
Sbjct: 60  ENERNRLQEQFGDMFEAVSSQPGYMQSVRANVLEQLIQQELLVQYARDHGMRVSAARVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                           + +   L   G     F   L    I   + +            
Sbjct: 120 EIRDIPAFRSAGQFDNDIYLMALRNAGYTPEQFATVLRDDLIRSQIAQAIGATEFALPAE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITV------------- 175
                                 +F+ +    + +I     + +                 
Sbjct: 180 ALALQRLQKQTRSGAYIIAENANFVDQVELSDSDIENYYNENQQQFQTPEQLKVAFVQLS 239

Query: 176 -----------------------REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
                                   +Y               +    Q++ ++A       
Sbjct: 240 KAELYNDVKVSDDEVKAYYQGSIDQYRTDEERRVAHILIESDSDNAQEKAQEALAQLNDG 299

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEY 269
                  ++++         G   ++ +  +   F N     ++  + ++   T  G   
Sbjct: 300 ADFAAIAKEYSDDTFSAEQGGDLDWITKGSMDEDFDNAAFALENVGDVSDIVETSFGYHI 359

Query: 270 IAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
           I + D R  ++     +   +  +    +++    E  +KL
Sbjct: 360 IKLLDVRPGEVTPFEDVAGEIRQKLKAQQVDDKYFELQQKL 400


>gi|157147527|ref|YP_001454846.1| peptidyl-prolyl cis-trans isomerase SurA [Citrobacter koseri ATCC
           BAA-895]
 gi|157084732|gb|ABV14410.1| hypothetical protein CKO_03327 [Citrobacter koseri ATCC BAA-895]
          Length = 428

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 34/311 (10%), Positives = 103/311 (33%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  +
Sbjct: 67  RHQILERLIMDQIVLQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLSYS 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP---ANKQKMKNITVREYLIRTVLFSIPD 189
            ++  +  + I  +V  N+   +   L  E+           + +    L   ++    +
Sbjct: 127 TYRSQIRKEMIISEVRNNEVRRRVTILPQEVDALAQQVGNQNDASTELNLSHILIPLPEN 186

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                    + R +   +              +++    +  G+  +    +L   F   
Sbjct: 187 PTSDQVSEAEARARSIVDEARNGSDFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R     +        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMTDQQARLK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEEI--AADIK 315



 Score = 83.6 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 95/309 (30%), Gaps = 26/309 (8%)

Query: 28  VPIVSYKSWAMSSRIRTTI-NGEV-----ITDGDISKRIALLKLQKINGELEKIAVQELI 81
           +   +Y+S      I + + N EV     I   ++      +  Q             L 
Sbjct: 123 LSYSTYRSQIRKEMIISEVRNNEVRRRVTILPQEVDALAQQVGNQNDASTELN-----LS 177

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
              +   E   S    ++       V  ARN     +   ++   Q         +  IQ
Sbjct: 178 HILIPLPENPTSDQVSEAEARARSIVDEARNGSDFGKLAITYSADQQALKGGQMGWGRIQ 237

Query: 142 SIWPDVVKND-----------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
            +     +                  G   +++   + + ++I+V E   R +L      
Sbjct: 238 ELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPI 297

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL 249
              +Q    K  + A + +          ++F+         G   +       P F++ 
Sbjct: 298 MT-DQQARLKLEEIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWAAADIFDPAFRDA 356

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
             + ++   + P  +  G   I + D R++   + A K          K  +  A ++++
Sbjct: 357 LTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAATWMQE 416

Query: 308 LRSNAIIHY 316
            R++A +  
Sbjct: 417 QRASAYVKI 425


>gi|253689994|ref|YP_003019184.1| Peptidylprolyl isomerase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756572|gb|ACT14648.1| Peptidylprolyl isomerase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 431

 Score =  105 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 35/309 (11%), Positives = 100/309 (32%), Gaps = 16/309 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   +    ++ +  +  ++   ++  V+ + D++  +  +KL              L
Sbjct: 7   LILGLALSASTAFAAPQVVDKVAAVVDNSVVLESDVNSLLQSVKLNAQQAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
                  LI++ +  Q  +K GI      +       A    +S +   S L  +G+  N
Sbjct: 67  RHQITDRLIMDNIILQMAQKMGIQVTDEQLEQAITNIAAQNRMSLDQLKSQLAYEGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + +  +V  N+   +   L  E+    +++ N T     +      IP  + 
Sbjct: 127 TYRSQIRKEMLISEVRNNEVRRRVTVLPQEVDTLAKQIANQTGENDELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDA---EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
             Q  V +    A    +              +++    +  G+  +    ++   F + 
Sbjct: 187 PTQQQVDEAENLATSLVKQISEGADFGKLAITYSADSQALKGGQMGWGKLQEIPTLFAER 246

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
           L +  +     P  +  G   + + D R     +        ++  + +    +      
Sbjct: 247 LTQAQKGQVVGPIRSGVGFHILKVNDIRGGNKSVSVTETHARHILIKPSVVMTDSQAQAK 306

Query: 305 VKKLRSNAI 313
           +  +     
Sbjct: 307 LADVAQQIK 315



 Score = 83.6 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 56/167 (33%), Gaps = 4/167 (2%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                G   +++   +   K+++V E   R +L         +Q    K    A++ +  
Sbjct: 259 IRSGVGFHILKVNDIRGGNKSVSVTETHARHILIKPSVVMTDSQAQ-AKLADVAQQIKNG 317

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEY 269
                 + +  +         G   +       P F++ L K  +   + P  +  G   
Sbjct: 318 STDFAAQAKLLSQDPGSANQGGDLGWASPDMYDPAFRDALLKLKKGEISQPIHSSFGWHL 377

Query: 270 IAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           I + D R +   + A K          K  +    ++++ R++A + 
Sbjct: 378 IQLLDTRQVDKTDAAQKEQAYRMIFNRKFAEEAQTWMQEQRASAYVK 424


>gi|50122778|ref|YP_051945.1| peptidyl-prolyl cis-trans isomerase SurA [Pectobacterium
           atrosepticum SCRI1043]
 gi|81693097|sp|Q6D0E2|SURA_ERWCT RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|49613304|emb|CAG76755.1| survival protein [Pectobacterium atrosepticum SCRI1043]
          Length = 431

 Score =  105 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 35/309 (11%), Positives = 101/309 (32%), Gaps = 16/309 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   +    ++ +  +  ++   ++  V+ + D++  +  +KL              L
Sbjct: 7   LILGLALSASTAFAAPQVVDKVAAVVDNSVVLESDVNSLLQSVKLNAQQAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
                  LI++ +  Q  +K GI      ++      A    +S +   S L  +G+  N
Sbjct: 67  RHQITDRLIMDNIILQMAQKMGIQVTDEQLDQAITNIAAQNRMSIDQLKSQLANEGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + +  +V  N+   +   L  E+    +++ N T     +      +P  + 
Sbjct: 127 TYRSQIRKEMLISEVRNNEVRRRVTVLPQEVDTLAKQIANQTGENDELNLSHILLPLPEN 186

Query: 193 QNQGFVQKRIKDA---EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
             Q  V +    A    +              ++S    +  G+  +    ++   F + 
Sbjct: 187 PTQQQVDEAENLATSLVKQISEGADFGKLAITYSSDSQALKGGQMGWGKLQEIPTLFAER 246

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
           L +  +     P  +  G   + + D R     +        ++  + +    +      
Sbjct: 247 LTQVQKGQVVGPIRSGVGFHILKVNDIRGGNKSVSVTETHARHILIKPSVVMTDSQAQAK 306

Query: 305 VKKLRSNAI 313
           +  +     
Sbjct: 307 LADVAQQIK 315



 Score = 83.6 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 55/167 (32%), Gaps = 4/167 (2%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                G   +++   +   K+++V E   R +L         +Q    K    A++ +  
Sbjct: 259 IRSGVGFHILKVNDIRGGNKSVSVTETHARHILIKPSVVMTDSQAQ-AKLADVAQQIKNG 317

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEY 269
                 + +  +         G   +       P F++ L K  +   + P  +  G   
Sbjct: 318 STDFAAQAKLLSQDPGSANQGGDLGWASPDMYDPAFRDALLKLKKGEISQPIHSSFGWHL 377

Query: 270 IAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           I + D R +   + A K          K  +    ++++ R+ A + 
Sbjct: 378 IQLLDTRQVDKTDAAQKEQAYRMIFNRKFAEEAQTWMQEQRAAAYVK 424


>gi|77917708|ref|YP_355523.1| parvulin-like peptidyl-prolyl isomerase [Pelobacter carbinolicus
           DSM 2380]
 gi|77543791|gb|ABA87353.1| parvulin-like peptidyl-prolyl isomerase [Pelobacter carbinolicus
           DSM 2380]
          Length = 307

 Score =  105 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 86/286 (30%), Gaps = 20/286 (6%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKI------NGELEKIAVQELIVETLKKQEIEKS 93
           S++   I+G  ++        A +  +           L +  + + I   L   E  + 
Sbjct: 28  SQVLLRIDGRTVSLEQFQHDFAQILPRDRVLPKDEEQALRRSYLAQRIDHELLLAEATRR 87

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
            ++     +      H       + DF   L  QG+    +++ L  Q +   V+     
Sbjct: 88  KLSVTPAELQQAIASHLDR--YPSGDFERMLADQGLAVEDWQRLLQEQLLVEKVLALMVR 145

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
            K    + EI A     +    R   ++    ++PD         + + + A E   +  
Sbjct: 146 DKVDIADEEINAYFAAHRQSFARPEQVKARQITVPD---------EAQGRQALEMLRQGT 196

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAI 272
                  + +        G        ++   F + +        ++   +  G     +
Sbjct: 197 PFAEVARRCSISPDADQGGDMGTFARGEMPEAFDKAVFGLPAGRISDLTESDYGYHIFLV 256

Query: 273 CDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                        ++  + AQ    + E+   ++++ LR  A I  
Sbjct: 257 EQHLPARPPDLDTVRGEIVAQLRKQQEEQLYQDWLQSLRQEAAIEI 302


>gi|126728790|ref|ZP_01744605.1| PPIC-type PPIASE domain [Sagittula stellata E-37]
 gi|126710720|gb|EBA09771.1| PPIC-type PPIASE domain [Sagittula stellata E-37]
          Length = 412

 Score =  105 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 96/248 (38%), Gaps = 4/248 (1%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              +N +VIT  ++ +R  +L++ +  G+L K+A ++LI + L+ Q    +GI      +
Sbjct: 35  AVIVNEQVITGYELEQRKRMLQVMRAPGDLNKVAREQLIDDRLRLQAARDAGIQPSPEEL 94

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                + A    L+ E F+  L + G+ +  ++ ++     W  +V+  F  +    E E
Sbjct: 95  LDGMEEFASRASLTREQFTQALAQAGVDEETYRDFVRAGLSWRMLVQQRFAGRANVSEDE 154

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +       +N T     +R +L  I       Q  V +                 +  +F
Sbjct: 155 VDRALSSGQNGTST---VRVLLSEIIMPMPPGQEEVVRERAQRIAQLDDTGAFSAQARRF 211

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           ++     + G+  +   S+L P  Q ++   +    ++P   Q  +    +    +   +
Sbjct: 212 SATASRGAGGQLPWRSLSELPPPLQPIVLGLAPGEVSDPIPLQGAMALFQLRAIEEGEYQ 271

Query: 282 IALKAYLS 289
               A + 
Sbjct: 272 PPATAAVE 279



 Score = 40.0 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 26/87 (29%), Gaps = 5/87 (5%)

Query: 233 KAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKG--VEYIAICDKRDLGGEIAL--KAY 287
               L  +++         K      +       G  +  + +C +     E     +  
Sbjct: 323 DRGTLPVNEIPTDIAYELSKLDPGEVSTALTRADGQTLVLLMLCGRTAGVAEEEAPDREQ 382

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAII 314
           +       +I      Y+ +LRS+A I
Sbjct: 383 VFGALRNQRIGSLADGYLAQLRSDATI 409


>gi|84684877|ref|ZP_01012777.1| Probable PpiC-type peptidyl-prolyl cis-trans isomerase
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84667212|gb|EAQ13682.1| Probable PpiC-type peptidyl-prolyl cis-trans isomerase
           [Rhodobacterales bacterium HTCC2654]
          Length = 414

 Score =  105 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 109/279 (39%), Gaps = 5/279 (1%)

Query: 7   TSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ 66
           T  + +   + T        ++   S  +          +N   +T  + ++R+A L++ 
Sbjct: 8   TRRNGWAGRILTLCASAALGMMMAGSPATAQGQFVPVAKVNDSAVTVYERNQRMAFLRIL 67

Query: 67  KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
              G++ ++A+ +LI E ++  E E+ GIT D   V     + A    L  E F +FL +
Sbjct: 68  NAPGDITQLALDQLINERIQLAEAERMGITADPEAVQNGMAEFAARGNLDVEQFGAFLAQ 127

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
            GI    F+ ++    +W +V +  F+ +    E EI     + +     ++L+  ++  
Sbjct: 128 AGIAFETFRDFVTAGIVWREVARAKFLPQVSITESEIDRAYAEAEPQPGEKFLLTEIVLP 187

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
              +         +   D         +  +  ++F+     ++ G+  ++    L PQ 
Sbjct: 188 ASSDLSL---KASRARADRLSKITTAEEFADAAKRFSVVPSRLNAGERDWVDVQALPPQA 244

Query: 247 QNLLK-KSQNNTTNPYVTQK-GVEYIAICDKRDLGGEIA 283
           Q+ ++   +   + P +    GV    + D+  +     
Sbjct: 245 QSAVRATREGRASRPVIIPDVGVAVYFVRDRETIRSTKV 283



 Score = 57.0 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 253 SQNNTTNPYVTQKG-VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
                +       G + ++ +C++R+   +   +A ++      +I  +  + +  LR+N
Sbjct: 348 DPGEVSTRLTAGNGTLVFLMLCNRRNDVPDSVSRAQIADALRNQRIGAYANDLLADLRAN 407

Query: 312 AIIHY 316
           A I Y
Sbjct: 408 AHIEY 412


>gi|283783842|ref|YP_003363707.1| chaperone precursor (peptidyl-prolyl cis-trans isomerase)
           [Citrobacter rodentium ICC168]
 gi|282947296|emb|CBG86841.1| chaperone precursor (peptidyl-prolyl cis-trans isomerase)
           [Citrobacter rodentium ICC168]
          Length = 428

 Score =  105 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 34/311 (10%), Positives = 104/311 (33%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNASQAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      AR   ++ +   S L   G+  +
Sbjct: 67  RHQILERLIMDQIVLQMGQKMGVKISDEQLDQAIANIARQNNMTLDQMRSRLAYDGLNYS 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP---ANKQKMKNITVREYLIRTVLFSIPD 189
            ++  +  + I  +V  N+   +   L  E+           + +    L   ++    +
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRVTILPQEVEALAQQVGNQNDASTELNLSHILIPLPEN 186

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                    + + +   +              +++    +  G+  +    +L   F   
Sbjct: 187 PTSDQVSEAEAQARSIVDQARSGSDFGKLAIAYSADQQALKGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R     +        ++  + +P   ++   + 
Sbjct: 247 LSTAKKGDVVGPIRSGVGFHILKVNDMRGQNQSISVTEVHARHILLKPSPIMTDQQARQK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQI--AADIK 315



 Score = 83.6 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 87/289 (30%), Gaps = 25/289 (8%)

Query: 47  NGEV-----ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           N EV     I   ++      +  Q             L    +   E   S    ++  
Sbjct: 143 NNEVRRRVTILPQEVEALAQQVGNQNDASTELN-----LSHILIPLPENPTSDQVSEAEA 197

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
                V  AR+     +   ++   Q         +  IQ +     +            
Sbjct: 198 QARSIVDQARSGSDFGKLAIAYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDVVG 257

Query: 152 -FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
                 G   +++   + + ++I+V E   R +L         +Q   QK  + A + + 
Sbjct: 258 PIRSGVGFHILKVNDMRGQNQSISVTEVHARHILLKPSPIMT-DQQARQKLEQIAADIKS 316

Query: 211 RLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVE 268
                    ++F+         G   +       P F++   + ++   + P  +  G  
Sbjct: 317 GKTTFAAAAKEFSQDPGSANQGGDLGWAAADIFDPAFRDALTRMNKGQISAPVHSSFGWH 376

Query: 269 YIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            I + D R +   + A K          K  +  A ++++ R++A +  
Sbjct: 377 LIELLDTRSVDKTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKI 425


>gi|262044914|ref|ZP_06017956.1| peptidylprolyl cis-trans isomerase SurA [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259037641|gb|EEW38870.1| peptidylprolyl cis-trans isomerase SurA [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 428

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/311 (11%), Positives = 105/311 (33%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+    + ++      A+   ++ +   S L  +GI  N
Sbjct: 67  RHQILERLIMDQIVLQMGQKMGVKISEDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP---ANKQKMKNITVREYLIRTVLFSIPD 189
            ++  +  + +  +V  N+   +   L  E+           + +    L   ++    +
Sbjct: 127 TYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPEN 186

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                    Q++     E              +++    +  G+  +    +L   F   
Sbjct: 187 PTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   +      
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQI--AAEIK 315



 Score = 82.4 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 89/287 (31%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q  +       +  L    +   E   S     +    
Sbjct: 143 NNEVRRRITV--LPQEVEALAKQIGDQNDASTELN-LSHILIPLPENPTSDEVAAAQEQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V+ ARN     +   ++   Q         +  IQ +     +              
Sbjct: 200 NSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   +   +NI+V E   R +L          Q    K  + A E +   
Sbjct: 260 RSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQ-AKLEQIAAEIKSGK 318

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYI 270
                  + ++         G   +       P F++  ++ ++  T+ P  +  G   I
Sbjct: 319 ITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLI 378

Query: 271 AICDKRDLG-GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R +   + A K          K  +  A ++++ R++A +  
Sbjct: 379 ELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKI 425


>gi|187477204|ref|YP_785228.1| peptidyl-prolyl cis-trans isomerase [Bordetella avium 197N]
 gi|122070624|sp|Q2KXA6|SURA_BORA1 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|115421790|emb|CAJ48301.1| survival protein (peptidyl-prolyl cis-trans isomerase) [Bordetella
           avium 197N]
          Length = 506

 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/332 (9%), Positives = 91/332 (27%), Gaps = 55/332 (16%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLK--------LQKINGELEKIAVQELIVETLK 86
                  I   +N +VIT  ++   +   K            +  L+K  +Q LI + L+
Sbjct: 51  GEQFVDGIAAIVNKDVITMREVQDGVKRAKVDLKERGIQLPDDNVLQKQVLQRLIFDRLE 110

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
           +QE ++ GI  D   V       A    L+ +   + ++K G+  + +++ L  +     
Sbjct: 111 RQEADRLGIRVDDAQVTQAINMVASRNKLTPQQLRAEVEKNGLSWDDYRKSLREEIRTDR 170

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI---------------------RTVLF 185
           + +          + E+ A  +        +                        + ++ 
Sbjct: 171 LRQRTIDNHIIITDAEVDAYLKDQARNPALQPQSAQAPVQEAPAAATGPVMLALGQILVR 230

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ 245
                       ++K+ +D      R     +     +     +  G             
Sbjct: 231 VPEGASPDTVASLRKKAEDILARLKRGDDFASVAAASSDGPEALEGGVMGVRPIDGWPDL 290

Query: 246 F-QNLLKKSQNNTTNPYVTQKGVEYIAICDK-------------------------RDLG 279
           F + +        +    +  G   + +  +                           + 
Sbjct: 291 FVKAVSNVPAGQVSGIIQSGNGFHILKVLQRGQAGAPAPARAAAPMPAPAAGRAAQGPVQ 350

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
                  ++  + +    ++   + ++++R  
Sbjct: 351 VTQTHARHILIKTSAVMSDQQARQRLEQVRQR 382



 Score =  100 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 13/137 (9%), Positives = 44/137 (32%), Gaps = 2/137 (1%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
               +       + +Q   Q+  +  +       K  +   +++        G   ++  
Sbjct: 355 HARHILIKTSAVMSDQQARQRLEQVRQRLESGSAKFEDMARQYSQDATAPQGGDLGWVNP 414

Query: 240 SDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAYLSAQNTPTKI 297
            ++ P F+  +        + P  +  G   + + ++R     +   +          + 
Sbjct: 415 GEMVPSFEAAMNSLKPGEISQPVESPFGWHLVQVLERRQKDVTDEMQRMQARQALFERRA 474

Query: 298 EKHEAEYVKKLRSNAII 314
                +++++LR+ A I
Sbjct: 475 GPAFEDWMEQLRAQAYI 491


>gi|262372454|ref|ZP_06065733.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter junii SH205]
 gi|262312479|gb|EEY93564.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter junii SH205]
          Length = 442

 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/322 (9%), Positives = 100/322 (31%), Gaps = 18/322 (5%)

Query: 7   TSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ 66
           T+L     +   +   ++  ++    +     +  +   ++  VI   D+ + IA  + Q
Sbjct: 3   TTLMKINSIQHIFRATVLAALISSSMHSFAQPTDEVVAIVDNSVILKSDLEQGIAETEHQ 62

Query: 67  KINGE--------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS-- 116
                        L+   + +LI+   + +++++ GI  D  ++N   ++ A  +G +  
Sbjct: 63  LKAQNKTVPPQQYLQMQVLDQLIIRQAQLEQVKRYGIKADEKSLNAAVLKVANQSGATTL 122

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
                           + +  +A       + +   M +    ++++       +     
Sbjct: 123 EAFQQKLDAIAPGTYENLRNRIAEDLAIGRLRQQQVMSRIKISDLDVENFLNSPEGQAAL 182

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
                 +   I  +   N    QK   + + +            K ++    V      +
Sbjct: 183 GTQAHVIHMRISGD---NAAEAQKVALEVKNALTNSDDPKAISSKLSTSSVKVDGADMGF 239

Query: 237 LLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD----LGGEIALKAYLSAQ 291
              S++  +    +       TT     + G+  + + +++        +     ++  Q
Sbjct: 240 RSLSEIPTELAARITPLKIGQTTELINVRDGIHVLKLLERKQNDQKALVDQYQTRHILIQ 299

Query: 292 NTPTKIEKHEAEYVKKLRSNAI 313
            +         + +  L + A 
Sbjct: 300 PSEVVSLDRAKQMIDSLYNRAK 321



 Score = 84.0 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 16/141 (11%), Positives = 47/141 (33%), Gaps = 3/141 (2%)

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYL 237
             +T    I  +++ +    ++ I                   +++        G   ++
Sbjct: 290 QYQTRHILIQPSEVVSLDRAKQMIDSLYNRAKAGEDFATLAATYSNDTGSARDGGSLGWV 349

Query: 238 LESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKAYLSAQNTPT 295
               +  +F+  +K +     + P+ TQ G   + + D R     +   +          
Sbjct: 350 SPGVMVAEFEQTMKNTPVGQISKPFQTQFGWHILQVMDTRQQDMTKEVQERMARQILGER 409

Query: 296 KIEKHEAEYVKKLRSNAIIHY 316
           + +     ++++LR+NA +  
Sbjct: 410 QFDTEVDTWMRELRANAYVEI 430


>gi|83309610|ref|YP_419874.1| parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magneticum AMB-1]
 gi|82944451|dbj|BAE49315.1| Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magneticum AMB-1]
          Length = 320

 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/311 (11%), Positives = 84/311 (27%), Gaps = 50/311 (16%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN 69
              +K+L     ++   +   ++      +  +   +NG  I    +    A    Q   
Sbjct: 45  RSLMKMLFARRPMLALSLAAGLAASPAIAADSVVANVNGSDIKMSQL----AEYGRQMGP 100

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
               +  ++  I   L  ++ ++  +  D +                             
Sbjct: 101 QAPYEAVLEVAINNQLVYEQAKRDKLDADPDVKAAL------------------------ 136

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                 + + IQ +   +++        +  +++  ++         E   R +L     
Sbjct: 137 ------KRVEIQLMAQALMQKKVRGAVTDEAVKVRYDQAVKNFQPQEEVHARHIL----- 185

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQN 248
                    ++  +       R        +  +         G   Y ++  + P+F  
Sbjct: 186 ------AETEEGARSIIADLNRGMDFAELAKTRSKDTGSGAMGGDLGYFVQGAMVPEFAA 239

Query: 249 LLK-KSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
                     +  P  TQ G   I + DKR     I               E+ + + V 
Sbjct: 240 AAFAMRPGELSKTPVKTQFGYHVIKVEDKRMAS--IPPYDQAKPVIARQIAEELQEKMVV 297

Query: 307 KLRSNAIIHYY 317
           +LR  A I  +
Sbjct: 298 ELREKAKIKRF 308


>gi|213161291|ref|ZP_03347001.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
          Length = 399

 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/311 (13%), Positives = 112/311 (36%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  +
Sbjct: 67  RHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANIAKQNNMTMDQMRSRLAYDGLNYS 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP--ANKQKMKNITVREYLIRTVLFSIPDN 190
            ++  +  + I  +V  N+   +   L  E+   A +   +N    E  +  +L ++P+N
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDASTELNLSHILIALPEN 186

Query: 191 KLQNQGFVQKRIKDAE-ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
               Q    +R  ++  E              +++    +  G+  +    +L   F   
Sbjct: 187 PTSEQVNDAQRQAESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R     +        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMNDQQARLK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEEI--AADIK 315



 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 76/256 (29%), Gaps = 20/256 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q          +  L    +   E   S    D+    
Sbjct: 143 NNEVRRRITV--LPQEVDALAKQIGTQNDASTELN-LSHILIALPENPTSEQVNDAQRQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V+ ARN     +   ++   Q         +  IQ +     +              
Sbjct: 200 ESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   + + ++I+V E   R +L         +Q    K  + A + +   
Sbjct: 260 RSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMN-DQQARLKLEEIAADIKSGK 318

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYI 270
                  ++++         G   +       P F++ L K      + P  +  G   I
Sbjct: 319 TTFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKLHKGQISAPVHSSFGWHLI 378

Query: 271 AICDKRDLGGEIALKA 286
            + D R +    A + 
Sbjct: 379 ELLDTRKVDKTDAAQK 394


>gi|83942391|ref|ZP_00954852.1| PPIC-type PPIASE domain protein [Sulfitobacter sp. EE-36]
 gi|83846484|gb|EAP84360.1| PPIC-type PPIASE domain protein [Sulfitobacter sp. EE-36]
          Length = 405

 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 99/270 (36%), Gaps = 6/270 (2%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           + ++   +   +  S          +N  V+T+ ++ +R   L++    G   + A+  L
Sbjct: 10  IAVLGLGLMTAAPVSAQNLFAPVAKVNESVVTEFEVQQRQRFLEVLNAPGATREGALTSL 69

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I E L+ + + ++GI      +     + A    LS E+F+  L + G+    F+ ++  
Sbjct: 70  IDERLRNEAVAEAGIELTPQGIEDSLAEFASRADLSTEEFTQALGQSGVSRETFRDFVVN 129

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
              W ++V+  +  +    + EI     + +   VR  +   ++ + P    +     ++
Sbjct: 130 SVGWRELVRARYASRVQITDAEINRALGETQGSGVRVLVSEIIIPAPPQQAARVNALAEQ 189

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTN 259
                        +  N   ++++       G+  +   +DL P  Q L+   +    T+
Sbjct: 190 -----ISQSKSTAEFSNYASRYSATASRGRGGRLPWQNLTDLPPSLQPLILNLAPGEVTD 244

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLS 289
           P      V    + D  +        + + 
Sbjct: 245 PLPIPNAVALFQLRDIEETSVAAPTYSEIE 274



 Score = 38.9 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 7/64 (10%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 253 SQNNTTNPYVTQKG--VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
                +       G  +  + +C +       A +  ++      ++  +  + +++LR+
Sbjct: 339 DTGEVSTTLTRANGQTLMLLMMCGRTAAANASASREDVTNALRQERLTGYAEQLLEQLRA 398

Query: 311 NAII 314
           +A I
Sbjct: 399 DARI 402


>gi|296101217|ref|YP_003611363.1| peptidyl-prolyl cis-trans isomerase SurA [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295055676|gb|ADF60414.1| peptidyl-prolyl cis-trans isomerase SurA [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 428

 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/311 (11%), Positives = 103/311 (33%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +L+   +V   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGVAMVANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMKSVKLNSGQAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   GI  +
Sbjct: 67  RHQILERLIMDQIVLQMGQKMGVKITDEQLDQAIANIAKQNNMTLDQMRSRLAYDGISYS 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP---ANKQKMKNITVREYLIRTVLFSIPD 189
            ++  +  + +  +V  N+   +   L  E+           + +    L   ++    +
Sbjct: 127 TYRNQIRKEMLISEVRNNEVRRRVTILPQEVDALAKQVGNQNDASTELNLSHILIPLPEN 186

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                    + + +   E              +++    +  G+  +    +L   F   
Sbjct: 187 PTSDQAAEAESQARAIVEQARNGSDFGKLAITYSADQQALKGGQMGWGRIQELPSIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   +      
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQNISVTEVHARHILLKPSPIMTDDQARAK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LQQI--AADIK 315



 Score = 85.9 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 91/288 (31%), Gaps = 25/288 (8%)

Query: 47  NGEV-----ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           N EV     I   ++      +  Q             L    +   E   S    ++ +
Sbjct: 143 NNEVRRRVTILPQEVDALAKQVGNQNDASTELN-----LSHILIPLPENPTSDQAAEAES 197

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
                V+ ARN     +   ++   Q         +  IQ +     +            
Sbjct: 198 QARAIVEQARNGSDFGKLAITYSADQQALKGGQMGWGRIQELPSIFAQALSTAKKGDIVG 257

Query: 152 -FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
                 G   +++   + + +NI+V E   R +L         +Q    K  + A + + 
Sbjct: 258 PIRSGVGFHILKVNDLRGQSQNISVTEVHARHILLKPSPIMTDDQA-RAKLQQIAADIKS 316

Query: 211 RLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVE 268
                 N  ++F+         G   +       P F++  +K ++   + P  +  G  
Sbjct: 317 GKTSFANAAKEFSQDPGSANQGGDLGWAAADIYDPAFRDALMKLNKGQMSAPVHSSFGWH 376

Query: 269 YIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            I + D R++   + A K          K  +  A ++++ R++A + 
Sbjct: 377 LIELLDTRNVDKTDAAQKDRAYRMLFNRKFSEEAATWMQEQRASAYVK 424


>gi|89054302|ref|YP_509753.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Jannaschia sp. CCS1]
 gi|88863851|gb|ABD54728.1| PPIC-type PPIASE domain [Jannaschia sp. CCS1]
          Length = 422

 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 90/280 (32%), Gaps = 6/280 (2%)

Query: 4   KVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL 63
           ++      +  L  T+  L      P                +N  ++T+ +I +RI  L
Sbjct: 10  RLRQMTRLWSAL--TFLCLGCALSAPFGGQAHAQNPFSAAVEVNDTIVTNFEIGQRIRFL 67

Query: 64  KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
           ++    G+L + A++ L+ E L+       G       +     + A    L  E F   
Sbjct: 68  QVLNAQGDLREQAIEALVNERLQLDAALAVGAEASPEAIETGLEEFAGRANLGPEQFLRQ 127

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
           + ++GI     + ++A    W +VV+  F       E ++    +    +     ++   
Sbjct: 128 MAQEGIAPETVRDFVANGITWRNVVRARFGPTIDITEEDVERALELGTVLGGGIEILLAE 187

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
           +        Q     +   +   +    + +      +F++     + G   +    +L 
Sbjct: 188 IIIPVTPDNQANLESE-LSRLGRDVAGNVERFSEAARRFSAAPTREAGGVTGWRPLGELP 246

Query: 244 PQFQNLLKKSQN-NTTNPYVTQKG--VEYIAICDKRDLGG 280
              ++   +      T+P     G          +R++  
Sbjct: 247 EGLRDRFMQMGYAQVTDPVSLGGGQAFALFQYRGQREVTS 286



 Score = 50.4 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 237 LLESDLHPQFQNLLKKSQNNTTNPYVTQKG---VEYIAICDKRDLGGEIALKAYLSAQNT 293
           +  S +       ++   N+  +  VT+ G   +  + +CD+     E  +   +  Q  
Sbjct: 339 VPPSQVPEDIALAIRTLDNHEMSTAVTRNGGTVLLAVMLCDRVSAEPEAGV-DRIREQLF 397

Query: 294 PTKIEKHEAEYVKKLRSNAIIHY 316
             ++++  A Y+++LR+ A I+Y
Sbjct: 398 GQQLQRLAANYLEELRAEARINY 420


>gi|170740805|ref|YP_001769460.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium sp.
           4-46]
 gi|168195079|gb|ACA17026.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium sp.
           4-46]
          Length = 295

 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 75/300 (25%), Gaps = 45/300 (15%)

Query: 21  VLIIFCIVPIVSYKSWAMS---SRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAV 77
            L++   +P V+  + A +     +   +NG  +T                         
Sbjct: 12  ALVLGLALPAVAQTAPAPNPAPDTVVARVNGSPVTAA----------------------- 48

Query: 78  QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY 137
                  +   +   S             V +  +  L A+        +         Y
Sbjct: 49  ----DLAVAADDPALSLPGVSDEQKKGLLVDYMVDLKLGAQAAEKAKVAESPDFTRKLAY 104

Query: 138 LAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGF 197
              + +  + ++ +              +          E   R +L     +   +   
Sbjct: 105 FRDKLLLDEYLEREAKKAVTPEAARKLYDDTVKTLKPEEEVHARHILV----DNEADAKK 160

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
           +  R                   + +         G   +  +  + P F +   K  Q 
Sbjct: 161 IAAR-------IKGGEDFSKVAAETSKDPGSKAEGGDLGWFTKERMVPAFAEAAFKLDQG 213

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             ++P  TQ G   I + +KR           +  Q       K + + + KLR  A I 
Sbjct: 214 KVSDPVRTQFGWHVIKVEEKRTKPV--PGFDEMKEQIDTYLTRKTQQDIITKLREQAKIE 271


>gi|242279456|ref|YP_002991585.1| SurA domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242122350|gb|ACS80046.1| SurA domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 312

 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/316 (13%), Positives = 100/316 (31%), Gaps = 19/316 (6%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ------ 66
           +K +   F+  +       +     +   I   +NGEV+T  ++++++A +  Q      
Sbjct: 1   MKRIIAGFLASMIIGSASFATAEEKVVDGIVAVVNGEVVTMYELNRKLAPIMKQFDGKSL 60

Query: 67  -----KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
                +    + +  +   I E +  QE ++  +   +  V+         + LS EDF 
Sbjct: 61  SAVEAEQLKRVRQQILDRFINEIIIDQESKRLKVDVSAQDVDNEVKAIKEKSNLSDEDFE 120

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
             L+ Q      FK+ +        ++      K    + EI A     +          
Sbjct: 121 RQLELQKTNLAAFKEKIGKDIRKHRLLSYKVKSKVVVTDDEIKAAWNSTRTDQGEVAKSV 180

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
            +   +    +      ++             +  +K            +G  ++   + 
Sbjct: 181 HLKLILFPENVSADQVREQI----VAGETTFEEAADKYTTGPGSGSGGDLGVLEWNDLAQ 236

Query: 242 LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICD--KRDLGGEIALKAYLSAQNTPTKIEK 299
                + L        + P+  Q     + +      +       K  +  +    K ++
Sbjct: 237 --TWHEALTGLKPGGISQPFEVQSFKALLKLDSYVNTEAASFEDSKQEIYQKLYRQKQDE 294

Query: 300 HEAEYVKKLRSNAIIH 315
             A+++KKLR  A+I 
Sbjct: 295 LFADFIKKLREKAVIE 310


>gi|90424494|ref|YP_532864.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB18]
 gi|90106508|gb|ABD88545.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB18]
          Length = 310

 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/302 (10%), Positives = 83/302 (27%), Gaps = 33/302 (10%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK--IAV 77
              ++       +    A +  +  T+NG  I + D+     ++       E  +   A+
Sbjct: 25  CFSVLLAATAGHTSGQSAPADPVIATVNGAPIHESDLQLADEMIGRNLPVQEKRERRDAL 84

Query: 78  QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY 137
             L+++++   ++ K     D   +                   +   +     NH  + 
Sbjct: 85  LTLVIDSMVLAQVAKDRKIADEADL----------------QRRASYARNQGLMNHLLEV 128

Query: 138 LAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGF 197
           +  Q++  D V+  +         +            +  +L   V      N       
Sbjct: 129 VGQQAVTEDAVRKAYQEVVVKPATD-----------QIELHLRHLVFKFPDANDAAAASA 177

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQN 255
            + + K A     +           +         G   +    ++  ++ ++       
Sbjct: 178 TEVKAKAAFARIDKGEDFAAVAADLSEDPATKARGGDFDWRTRPEMGKEYADVAFALKPG 237

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             + P  T  G   I + ++R           +  +           + V K RS A I 
Sbjct: 238 EVSAPIKTAFGWHIIKLEERRPRKP--VEFEKIRDRVAAMVANAARFDLVDKARSAATIE 295

Query: 316 YY 317
            +
Sbjct: 296 RF 297


>gi|163759133|ref|ZP_02166219.1| hypothetical protein HPDFL43_05195 [Hoeflea phototrophica DFL-43]
 gi|162283537|gb|EDQ33822.1| hypothetical protein HPDFL43_05195 [Hoeflea phototrophica DFL-43]
          Length = 283

 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 66/280 (23%), Positives = 135/280 (48%), Gaps = 4/280 (1%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            +S I+  +N + IT  DI++R+A L+LQ+  G L+  A ++LI E+LK QE  +     
Sbjct: 2   AASEIKIVVNKQAITSVDIARRVAFLRLQRTGGNLQAKAREQLIEESLKYQEALRIRAVV 61

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
               ++  + +  ++  LS +  +  L++ G+   HFK ++ +Q  WP VV+       G
Sbjct: 62  SQAQIDASYARFGKSNNLSVKQLNQVLNQAGVTPQHFKDFIRVQMSWPRVVQALEGTSGG 121

Query: 158 NLEMEIPANKQKMKNITVR--EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
            +  +   +K   +          I   +  +  +  ++   +  R ++AE+ R R    
Sbjct: 122 GMSTQDLVSKMLERGDDKPSTTEYILQQVIFVVPSNKRSNATLNARKREAEQLRGRYQGC 181

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYV-TQKGVEYIAICD 274
            N      + + DV++     +++  L P ++ L++K++   T P   T +GVE+I IC 
Sbjct: 182 ENAAAAV-TGLRDVTLRNLGRIMQPQLPPDWKPLIEKTEAGATTPTRITDRGVEFIVICS 240

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            + +  + A +    A+N+     +   +++ KLR +A+I
Sbjct: 241 SKTVSDDRAAELVFRAENSDAGDSETAKKHLAKLRESAVI 280


>gi|304406731|ref|ZP_07388386.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           curdlanolyticus YK9]
 gi|304344264|gb|EFM10103.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           curdlanolyticus YK9]
          Length = 362

 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 80/278 (28%), Gaps = 25/278 (8%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              +NG  IT+  + + +       + G   K  +  LI   L KQE +K GI      +
Sbjct: 102 VAVVNGVRITERQLYEGL-------LGGGRGKTQLDNLIDTELVKQEADKKGIVVSDADI 154

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                   R  G       +    Q   ++ +        I    ++     +    + E
Sbjct: 155 AAELAVMVRRIGSEEALNEALKQNQLTVEDLYP-----DLIQQVRLRKLLQSRIHITDQE 209

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +     +      +   +R     +      +    +                    ++ 
Sbjct: 210 VRDYYTENLEYITQPEQVRASHILVETKAEADIIVKE---------LNNGGDFATIAKQK 260

Query: 223 A-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL-- 278
           +       + G   Y     +   F++          + P  ++ G   I + D +    
Sbjct: 261 SLDTGSKNAGGDLGYFERGVMDQSFEDAAFSLKVGEISKPVKSEFGYHIILVTDHKAAVT 320

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                 KA +    T  KI +  A +++ LR+ A I  
Sbjct: 321 PTFEEEKATIREMLTTEKIYELAATFIEGLRAQAKIEN 358


>gi|253698852|ref|YP_003020041.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
 gi|251773702|gb|ACT16283.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
          Length = 336

 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 87/318 (27%), Gaps = 52/318 (16%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSR------IRTTINGEVITDGDISKRIA- 61
           L+          +L +         K+ + +++      +   +NG  ITD D  K  A 
Sbjct: 18  LTVHFTKTAAVLLLALCVAATGCKQKAESEANKGPGSGIVLAEVNGAKITDNDFYKEQAA 77

Query: 62  ---LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
               LK      E +K  +  ++V  L  Q+ +K GI       +               
Sbjct: 78  LPPYLKPMTETPEGKKEMLDTMVVRELILQQAKKDGIDNSPEVASKL------------- 124

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
                            + L  + I    +K          + ++ A  +K K       
Sbjct: 125 -----------------EDLKKRVIVEAYLKKKVEESANISDADMKAFYEKNKEKFQSGA 167

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
            +R     +                                +K +        G   +  
Sbjct: 168 QVRASHILVKSEAEAKDVQ---------NQLKSGASFEELAKKHSIDGAAQKGGDLGWFS 218

Query: 239 ESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPT 295
           +  + P F+ +     +  T+    TQ G   I     R  G      +K  + A   P 
Sbjct: 219 KGSMIPDFEKVAFGLKEGETSGIVKTQFGYHIIKKTGDRPAGARSFEDVKDQIKAAMVPE 278

Query: 296 KIEKHEAEYVKKLRSNAI 313
           + ++       +L+ +A 
Sbjct: 279 RQQETFKNLKDELKKSAK 296


>gi|148261608|ref|YP_001235735.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidiphilium cryptum
           JF-5]
 gi|146403289|gb|ABQ31816.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidiphilium cryptum
           JF-5]
          Length = 427

 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 92/290 (31%), Gaps = 12/290 (4%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL--- 65
           +  F+       ++ +   +      + A ++ I   +NG VIT+ D++ R  L  L   
Sbjct: 1   MKSFVSY---AALIGLAAGLLAPGAPARAQTASIAAVVNGTVITNADVAARTRLFALSAG 57

Query: 66  ----QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
                     L+    +ELI ++L+ Q IE++ +      +     +      L      
Sbjct: 58  LPTTSATLQRLKPQITRELIDQSLQLQAIERNKVVVPEAKIAAALKRVNEANHLPPGSLQ 117

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
             L   GI  +        Q  W DV++            +I A +  MK    +     
Sbjct: 118 KKLAAAGIPLSTLVSQFRTQIGWTDVLRKKLGPDLRPTAADIAAEEAAMKKEIGKTQYHI 177

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             +F   +N   +    ++                    +F+     ++ G   ++    
Sbjct: 178 AEIFIPVENP-ADVANARRFADVVIRQLRAGAPFPVVAAQFSQSQSALTGGDRGWVQPDL 236

Query: 242 LHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA 290
           L P  + +++K      ++P     G E +     R  G        +  
Sbjct: 237 LDPAVRRIVEKMPVGAISDPVRVAGGFEIVNQLGIRQFGVGQRTTLSIRQ 286



 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 8/63 (12%), Positives = 21/63 (33%)

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              + P V+  G+  + +C +      +  K  +       ++       +  L  +A I
Sbjct: 362 GQPSEPLVSSSGIAIVMVCKRETSKIGLPGKKAIEEMLINRRVSLEAQRLMDTLHRDAEI 421

Query: 315 HYY 317
             +
Sbjct: 422 RIF 424


>gi|296532547|ref|ZP_06895259.1| peptidyl-prolyl cis-trans isomerase [Roseomonas cervicalis ATCC
           49957]
 gi|296267124|gb|EFH13037.1| peptidyl-prolyl cis-trans isomerase [Roseomonas cervicalis ATCC
           49957]
          Length = 330

 Score =  105 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/291 (8%), Positives = 70/291 (24%), Gaps = 47/291 (16%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ---KINGELEKIAVQELIVETLKKQ 88
                   + +   ++G  +   DI   ++ L  +        L  + + +LI +     
Sbjct: 45  GNAQAQRPNPVVARVDGAELRRSDIEAALSQLPGELRAAPPQMLFPLVLDQLIAQQALVN 104

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
                G+  D                                     +    + +   ++
Sbjct: 105 AARAQGLDKDPEVQAAI------------------------------RRAEEEQLQQALL 134

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
           +           +    +++        E   R +L +           V          
Sbjct: 135 RRAIAPALTPEALRARYDREIAGKPGEEEVHARHILTATEAEARAALEEV---------- 184

Query: 209 RLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKG 266
           R           + ++       G   +  + D+ P+F +          +  P  +  G
Sbjct: 185 RRPGADFAEVARRRSTGPGTQQGGDLGFFKKGDMVPEFAEAAFALQPGQISQAPVRSAFG 244

Query: 267 VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
              I + ++R            + +      E+     V+   + A +  +
Sbjct: 245 WHIIKVEERRTAPV--PSFEESAEELRKAAFEEAVNAAVESTVAAARVERF 293


>gi|237816303|ref|ZP_04595296.1| peptidyl-prolyl cis-trans isomerase [Brucella abortus str. 2308 A]
 gi|237788370|gb|EEP62585.1| peptidyl-prolyl cis-trans isomerase [Brucella abortus str. 2308 A]
          Length = 381

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 85/282 (30%), Gaps = 48/282 (17%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQ---KINGELEKIAVQELIVETLKKQEIEKSGIT 96
           S++  TING+ IT G++ +    L  Q       +    A+  LI       E EK  + 
Sbjct: 111 SKVLATINGKDITVGEVDQAAGDLDPQFARLPVEQRRLAALAALIDIKAMAGEAEKDKL- 169

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
                                         Q        ++L  +++  +  KN  + K 
Sbjct: 170 -----------------------------DQTKEFKDRMEFLRERALHNEYFKNAIVDKI 200

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
            + ++    +K+        E   R +L    +                 +      K  
Sbjct: 201 SDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA-----------IIKKLEGGAKFE 249

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT-NPYVTQKGVEYIAICD 274
           +  +  ++     S G   Y  E  + P+F+           T  P  TQ G   I + D
Sbjct: 250 DLAKASSTDGTASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLED 309

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +R           +  Q     + +   E VKKLR    I Y
Sbjct: 310 RRTKQP--PAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDY 349


>gi|222833212|gb|EEE71689.1| predicted protein [Populus trichocarpa]
          Length = 386

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 91/282 (32%), Gaps = 12/282 (4%)

Query: 46  INGEV-ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           ++G V +TD DI + +A  +    +     + +  +++   +     +            
Sbjct: 101 VDGRVRVTDADIDRYLAEQRSGGADKAPAAVNLGHILISVPENASPAEVAEREARAKQAA 160

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND--------FMLKY 156
              +   +     ++FS   D QG G    +       ++   V           F    
Sbjct: 161 EAARTQGDFLAVVKEFSDVPDGQGGGAMGMRPLDRYPELFTKAVGQTAQGGIVGPFRSGA 220

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
           G   +++    Q      V +   R +L  I D   +     +           +     
Sbjct: 221 GFHVLKVLEKSQAGMPSVVTQNHARHILLRIGDQMTEADAAKRLADYKRRVDSGQASF-E 279

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK 275
           +   +F+      + G   +       P+F+ +L        ++P V++ GV  I + ++
Sbjct: 280 SLAREFSQDGSARNGGDLGWASPGQFVPEFEQVLNALQPGQVSDPLVSRFGVHLIQLIER 339

Query: 276 RDLG-GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           R         +  +       K+E     ++++LR  A + Y
Sbjct: 340 RQAALTPREQRDMVRNVVRERKLETDYQTWLQELRGRAYVEY 381



 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 90/267 (33%), Gaps = 11/267 (4%)

Query: 56  ISKRIALLKLQKINGEL-EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
           +++ IA    Q     L  +  ++ LIVE  + QE + +G+  D   V+      AR  G
Sbjct: 4   VAQNIAEQGGQMPPEALLAREVLERLIVEKAQLQEAKDTGLRVDDYAVDQALTNVARQNG 63

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN--KQKMKN 172
           L      S L  +G+ +  F++ L  Q     + + D   +    + +I     +Q+   
Sbjct: 64  LDKAGLQSRLRAEGVNEKQFREELRRQITLQRLRERDVDGRVRVTDADIDRYLAEQRSGG 123

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL---EKFASKIHDV 229
                  +      I   +  +   V +R   A+++        + L   ++F+      
Sbjct: 124 ADKAPAAVNLGHILISVPENASPAEVAEREARAKQAAEAARTQGDFLAVVKEFSDVPDGQ 183

Query: 230 SIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG----GEIAL 284
             G             F + + + +Q     P+ +  G   + + +K   G         
Sbjct: 184 GGGAMGMRPLDRYPELFTKAVGQTAQGGIVGPFRSGAGFHVLKVLEKSQAGMPSVVTQNH 243

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             ++  +      E   A+ +   +  
Sbjct: 244 ARHILLRIGDQMTEADAAKRLADYKRR 270


>gi|110635342|ref|YP_675550.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mesorhizobium sp.
           BNC1]
 gi|110286326|gb|ABG64385.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chelativorans sp.
           BNC1]
          Length = 351

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 84/288 (29%), Gaps = 48/288 (16%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDI---SKRIALLKLQKINGELEKIAVQELIVETLK 86
           + +  + A  S +  TING+ IT+ D+    + +     Q    +    A+  +I   L 
Sbjct: 63  LSAAPAIAQESPVVATINGQQITEADLALAQEELGPQFGQMPEDQRRAAALSAVIDVRLF 122

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
             E +K GI                                        ++L  +++   
Sbjct: 123 ASEAQKEGIDKTDEFQRRT------------------------------EFLRQRALHSA 152

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
            +  + +    + E+     ++  K     E   R +L              ++  K+  
Sbjct: 153 YIDANVVKPITDEELNARYEEEVAKIPQQEEVHARHIL-----------VDSEEEAKNII 201

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTT-NPYVTQ 264
                        ++ +      + G   Y  E  + P+F +          +  P  TQ
Sbjct: 202 TQLDEGGDFAEIAKEKSKDGAAANGGDLGYFTEGAMVPEFSKAAFAMEPGAHSEEPVKTQ 261

Query: 265 KGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
            G   I + DKR           +  Q     I     E +  LR NA
Sbjct: 262 FGWHVIKVEDKRMQPP--PALEQVKDQIRSMVIRDKYMETLVSLRENA 307


>gi|110680309|ref|YP_683316.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Roseobacter
           denitrificans OCh 114]
 gi|109456425|gb|ABG32630.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Roseobacter
           denitrificans OCh 114]
          Length = 406

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 94/278 (33%), Gaps = 5/278 (1%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
            I++     VL +     +               +N  VIT+ +I +R   L L    G 
Sbjct: 1   MIRIKQFCSVLALCAACSLAPPLGAQNLFSPAIQVNDAVITEFEIEQRQQFLTLLNAPGS 60

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
             +  V+ELI E L+ Q +  +G+      +     + A    L  ++F + L++ GI  
Sbjct: 61  SRQAVVEELINERLRAQAVANAGLELSDAALQEGMTEFAGRVNLGVDEFKTVLEENGIAA 120

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
             F+ ++ +   W D +   F  +    E EI          +  + L+  ++   P ++
Sbjct: 121 ETFEDFVRVGVSWRDFIAARFGPRLQVSEEEIDQALGSTNGASNIQVLVSEIIIPAPPSR 180

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL-ESDLHPQFQNLL 250
                 V     +         +      +F++       G+  +    +        LL
Sbjct: 181 AVEVQEVA----EQIAVTTSTEEFSEYARRFSATATRDQGGRLDWQPLSNLPPSLRPLLL 236

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
             +    T P    + V    + D R+ G      A +
Sbjct: 237 GLAPGEVTEPLNIPEAVALFQLRDIRETGASTPEFAAI 274



 Score = 41.2 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 235 QYLLESDLHPQFQNLLKKSQNNTTNPYVT---QKGVEYIAICDKRDLGGEIALKAYLSAQ 291
                S++       L K     T+  +T    + + ++ +C +     E   +   +  
Sbjct: 321 GSKPPSEIPTDIAVELSKLDPGETSIALTRAEGQTLLFLMMCGRTAAANEDVGRDEAARA 380

Query: 292 NTPTKIEKHEAEYVKKLRSNAIIHY 316
              +++      ++++LR++A I  
Sbjct: 381 LRSSRLNAIAESFLEQLRADARIRI 405


>gi|254560598|ref|YP_003067693.1| cell-binding factor 2 [Methylobacterium extorquens DM4]
 gi|254267876|emb|CAX23742.1| putative cell-binding factor 2 precursor (Major antigen peb4A),
           cbf2 [Methylobacterium extorquens DM4]
          Length = 300

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/278 (11%), Positives = 66/278 (23%), Gaps = 42/278 (15%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS 99
             +   +NG+ IT  D++       L                                D 
Sbjct: 47  ETVVARVNGQAITAADLAIAAEDPALSLPG---------------------------VDE 79

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
                  V +  +  + A+   S              Y   + +  D ++ +        
Sbjct: 80  GAKQNLLVDYMVDLKVGAQAAESAKVGDAPEFKRKLAYFRDKLLLDDYLEREAKKAVTPE 139

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
             +    +         E   R +L              +   K                
Sbjct: 140 AAKALYEQTVKSMKPEEEVRARHIL-----------VESEDEAKKIAARVKGGEDFAKIA 188

Query: 220 EKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRD 277
            + +         G   +  +  +   F +   K +    ++P  TQ G   + + +KR 
Sbjct: 189 GEVSKDPGSKTEGGDLGWFSQERMVKPFADAAFKMAPGQVSDPVKTQFGWHVLRVEEKRT 248

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                     +  Q       K + + + KLR  A + 
Sbjct: 249 KPV--PTFDEMKEQIDQYLTRKAQQDTIVKLREAAKVE 284


>gi|225628141|ref|ZP_03786176.1| peptidyl-prolyl cis-trans isomerase [Brucella ceti str. Cudo]
 gi|225616966|gb|EEH14013.1| peptidyl-prolyl cis-trans isomerase [Brucella ceti str. Cudo]
          Length = 381

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 85/282 (30%), Gaps = 48/282 (17%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQ---KINGELEKIAVQELIVETLKKQEIEKSGIT 96
           S++  TING+ IT G++ +    L  Q       +    A+  LI       E EK  + 
Sbjct: 111 SKVLATINGKDITVGEVDQAAGDLDPQFARLPVEQRRLAALAALIDIKAMAGEAEKDKL- 169

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
                                         Q        ++L  +++  +  KN  + K 
Sbjct: 170 -----------------------------DQTKEFKDRMEFLRERALHNEYFKNAIVDKI 200

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
            + ++    +K+        E   R +L    +                 +      K  
Sbjct: 201 SDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA-----------IIKKLEGGAKFE 249

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT-NPYVTQKGVEYIAICD 274
           +  +  ++     S G   Y  E  + P+F+           T  P  TQ G   I + D
Sbjct: 250 DLAKASSTDGTASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLED 309

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +R           +  Q     + +   E VKKLR    I Y
Sbjct: 310 RRTKQP--PAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDY 349


>gi|299136355|ref|ZP_07029539.1| SurA domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298602479|gb|EFI58633.1| SurA domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 350

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/341 (11%), Positives = 99/341 (29%), Gaps = 38/341 (11%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +  +     ++    + ++S         +  T+NG  I   ++ K              
Sbjct: 1   MPKIFRSSAVLFASTLVLLSGCHKGPQDGVVGTVNGHPILRTEVDKAYNAQLASNPQQTA 60

Query: 72  --------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
                   L    + ELIVE + +Q   K  +    + V+    +       + E F + 
Sbjct: 61  PSADQADSLRLNILHELIVEEIVEQRAAKQNLIATDSEVDAKLAEMKA--PYTEEQFQAR 118

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
           L    +  +  ++ +        +   +   K    + ++       K+          +
Sbjct: 119 LKTANLTLDELRRDIRRNLTQTKLFNKEIDSKITVTDGDVNNYFNAHKDSFNLIENRYHL 178

Query: 184 LFSIPDNKLQNQ------------GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVS 230
              +  N+   Q               +K+I+  +               F+       +
Sbjct: 179 AQILVTNQPAQQSSNLQNSKATTDDEARKKIQALKNRLDTGDDFGTIASNFSENQDTAPN 238

Query: 231 IGKAQYLLESDL---HPQFQNLLKKSQNNTTNPYVT-------QKGVEYIAICDKRDLG- 279
            G   ++ ES +      +  ++K      T+             G     +  K   G 
Sbjct: 239 GGDVGFVPESQMKADPTAYAAIMKLKAGQITDILPVLDGTTHKVAGYSIYKLISKEPAGQ 298

Query: 280 ---GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
               +  ++  +  Q   ++ +  +A Y++ LR  A +  Y
Sbjct: 299 RDLNDPRVQQNIRQQLHESRSQLLKASYLEMLRDQAKVENY 339


>gi|85859367|ref|YP_461569.1| peptidylprolyl isomerase [Syntrophus aciditrophicus SB]
 gi|85722458|gb|ABC77401.1| peptidylprolyl isomerase [Syntrophus aciditrophicus SB]
          Length = 364

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/351 (12%), Positives = 104/351 (29%), Gaps = 46/351 (13%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSR--------------------------- 41
           L  F   L     L+ F +           +S+                           
Sbjct: 10  LKGFFSTLFVLICLLAFLLTACQKNDQQGTASKEETAPTASVPQTATPAEGAEKALGPGD 69

Query: 42  IRTTINGEVITDGDISKRIAL-----------LKLQKINGELEKIAVQELIVETLKKQEI 90
               ++G  +T G +   +              KL ++   ++K  + + +V+TL   E+
Sbjct: 70  PVIEVDGVKMTKGQLDTEVNRKLESIRKRVPAEKLPQVKTNIQKRLIDDFVVKTLLNNEV 129

Query: 91  EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
            +  IT     VN    +   +   +     + L K  +     ++ + +      ++ +
Sbjct: 130 NRLKITATEQEVNEAVEKLKSSLPANV-SLENLLKKNQMTREKMREEIRLGIQINKLMVS 188

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
                    E EI +  +K ++       +      I       +  + ++   AE  R 
Sbjct: 189 RTKNLPKPTEKEITSFYKKNQDRFKLPEAVHVRHILIARAPDDGEKVIAEKKAKAEGLRK 248

Query: 211 R---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKG 266
           +           +  +      + G    +    +   F++ +    +N       T+ G
Sbjct: 249 KILAGADFAELAKSNSDCPSKSAGGDLGIVSRGQMVKPFEDAIFSLKKNQIGPVVQTEYG 308

Query: 267 VEYIAICDKRDLGG---EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              + + D R       +   K  +S+     K ++   + V  L+  A I
Sbjct: 309 FHVVQVLDVRQPKTVALDERTKGMISSFLLQQKQQEAFRKMVASLKEKANI 359


>gi|237729350|ref|ZP_04559831.1| peptidyl-prolyl cis-trans isomerase SurA [Citrobacter sp. 30_2]
 gi|226909079|gb|EEH94997.1| peptidyl-prolyl cis-trans isomerase SurA [Citrobacter sp. 30_2]
          Length = 428

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 104/311 (33%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L + G+  +
Sbjct: 67  RHQILERLIMDQILLQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAQDGLSYS 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  +    +V  N+   +   L  E+ A  Q++ N       +      IP  + 
Sbjct: 127 TYRSQIRKEMTISEVRNNEVRRRVTILPQEVDALAQQVGNQNDASTELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKD---AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                V           +              +++    +  G+  +    +L   F   
Sbjct: 187 PTSDQVNAAESQARSVVDEARNGSDFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R     +        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIIGPIRSGVGFHILKVNDMRGQSQSISVTEVHARHILLKPSPIMTDQQARLK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQI--AADIK 315



 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 87/288 (30%), Gaps = 25/288 (8%)

Query: 47  NGEV-----ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           N EV     I   ++      +  Q             L    +   E   S     + +
Sbjct: 143 NNEVRRRVTILPQEVDALAQQVGNQNDASTELN-----LSHILIPLPENPTSDQVNAAES 197

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
                V  ARN     +   ++   Q         +  IQ +     +            
Sbjct: 198 QARSVVDEARNGSDFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIIG 257

Query: 152 -FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
                 G   +++   + + ++I+V E   R +L         +Q    K  + A + + 
Sbjct: 258 PIRSGVGFHILKVNDMRGQSQSISVTEVHARHILLKPSPIMT-DQQARLKLEQIAADIKS 316

Query: 211 RLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVE 268
                    ++F+         G   +       P F++   K ++   + P  +  G  
Sbjct: 317 GKTTFAAAAKEFSQDPGSANQGGDLGWAAADIFDPAFRDALTKLNKGQMSAPVHSSFGWH 376

Query: 269 YIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            I + D R++   + A K          K  +  A ++++ R++A + 
Sbjct: 377 LIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVK 424


>gi|163735798|ref|ZP_02143227.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Roseobacter
           litoralis Och 149]
 gi|161390884|gb|EDQ15224.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Roseobacter
           litoralis Och 149]
          Length = 415

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 99/278 (35%), Gaps = 6/278 (2%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYK-SWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
           +  +  +  +++ C     +              +N  VIT+ +I +R   L L    G 
Sbjct: 10  MIRIKEFCTVLMVCATCSFAVPLGAQSLFSPVIEVNDGVITEFEIEQRQQFLILLNAPGS 69

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
             +  ++ELI E L+ Q +  +G+      +    ++ A    L  ++F + L++ GI  
Sbjct: 70  SRQAVIEELINERLRAQAVANAGLELSDAAMQDGMIEFAGRVNLGVDEFKTVLEENGIAA 129

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
             F+ ++ +   W D +   F  +    E EI          +  + L+  ++   P  +
Sbjct: 130 TTFEDFVRVGVSWRDFIAARFGPRLQVSEEEIDQALGSTNGASNIQVLVSEIIIPAPPAR 189

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL-ESDLHPQFQNLL 250
                 V     +   +   + +  +   +F++       G+ ++    +        LL
Sbjct: 190 ALEVQEVA----EQIATTTSVEEFSDYARRFSATATRDQGGRLEWQALSNLPPSLRPLLL 245

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
             +    T P    + V    + D R+ G      A +
Sbjct: 246 GLAPGEVTEPLNIPEAVALFQLRDIRETGASTPEYAAI 283



 Score = 39.7 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 235 QYLLESDLHPQFQNLLKKSQNNTTNPYVT---QKGVEYIAICDKRDLGGEIALKAYLSAQ 291
                S++       L K     T+  +T    + + ++ +C +     E   +   +  
Sbjct: 330 GSKPPSEIPTDIALELSKLDPGETSIALTRSEGQTLLFLMMCGRTAAANEDVGRDEAANA 389

Query: 292 NTPTKIEKHEAEYVKKLRSNAII 314
               ++      ++++LR++A I
Sbjct: 390 LRGGRLNAIAESFLEQLRADARI 412


>gi|51894079|ref|YP_076770.1| putative post-translocation molecular chaperone [Symbiobacterium
           thermophilum IAM 14863]
 gi|51857768|dbj|BAD41926.1| putative post-translocation molecular chaperone [Symbiobacterium
           thermophilum IAM 14863]
          Length = 297

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/318 (13%), Positives = 93/318 (29%), Gaps = 31/318 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSR--IRTTINGEVITDGDISK 58
           M +      +  + ++ T  V  +       S +     +   +  T+NGE IT  ++ +
Sbjct: 1   MLANGNNRATIALAVVATLVVAGLGGYFVGSSLQRPGTGNDPAVVATVNGEQITRDEVHQ 60

Query: 59  RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
           ++                V ++I+  L  QE  ++G+T     V           G    
Sbjct: 61  KLMTY--------YGAAVVDDMILTRLVDQEAARAGVTVTDAEVEEEVEATKAAYGGDL- 111

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
            FS  L + G+ +  F+  L    +   V++         L+      +   +   ++  
Sbjct: 112 YFSWALSQYGLSEAQFRDMLRRDMVATAVLRQQLQPDDATLKAYFDEMQSAEQTRKIKVR 171

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYL 237
            I                  +++  + +             +  +         G    +
Sbjct: 172 HILV--------------DTEEKANEIKARLDAGADFAQLAQAESKDTASAAKGGDLGLI 217

Query: 238 LESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK 296
            + D   +F+      +    + P  +  G   I              K  +  Q    K
Sbjct: 218 GKGDTVSEFEAAAFALNDGEISAPVQSTYGWHIIQAY----QLHFEQEKQTILEQYLNEK 273

Query: 297 IEKHEAEYVKKLRSNAII 314
           +      +  +LR NA I
Sbjct: 274 VSARLGTWYSELRENAQI 291


>gi|296116659|ref|ZP_06835269.1| peptidyl-prolyl cis-trans isomerase [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976871|gb|EFG83639.1| peptidyl-prolyl cis-trans isomerase [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 461

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 80/265 (30%), Gaps = 9/265 (3%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-------ELEKIAVQELIVETLK 86
                   I   +NG V+T  D+  R  L  L             L    V++LI E L+
Sbjct: 58  TGPQTEDSIVAIVNGSVLTKRDVDTRGRLFALSSGLDVSKDVMVRLRPQIVRQLIDERLR 117

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
            + + +  I      +        +  G+      + L +  I        + +Q  W  
Sbjct: 118 MEAMLERHINVPVAQIAAAISGIEQRNGMPENSLRNRLAQDSISLTTLIDQIRVQVGWSQ 177

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           V++ +   +      EI      +K    +   + + +F   ++         K  +   
Sbjct: 178 VLRMETGSRGRITATEIQQRTDALKREDGKPQYMISEIFVPVEDPHH-PETELKFTETII 236

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQK 265
           +             +F+     +  G   +  E  L     +   K      +NP     
Sbjct: 237 QELREGAPFPIVAAQFSQSQSALEGGLLGWTQEDSLDPEVVEVARKMPDGAISNPIRVAG 296

Query: 266 GVEYIAICDKRDLGGEIALKAYLSA 290
           G     + ++R +G E+A    +  
Sbjct: 297 GYVIATVNNRRTVGHEMATILNIHQ 321



 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 83/276 (30%), Gaps = 21/276 (7%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           IT  +I +R   LK +    +        +I E     E                 +Q  
Sbjct: 189 ITATEIQQRTDALKREDGKPQY-------MISEIFVPVE--DPHHPETELKFTETIIQEL 239

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK--NDFMLKYGNLEMEIPANKQ 168
           R         + F   Q   +     +    S+ P+VV+          +  + +     
Sbjct: 240 REGAPFPIVAAQFSQSQSALEGGLLGWTQEDSLDPEVVEVARKMPDGAISNPIRVAGGYV 299

Query: 169 KMKNITVREY---------LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
                  R           + +  L        Q+    QK+            K C+++
Sbjct: 300 IATVNNRRTVGHEMATILNIHQAFLPFDQPLNPQDPSDQQKQTLQQASDLAGKVKSCDEM 359

Query: 220 EKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           E    K  +        L    L+PQ + +         ++P V+  G+  I +C + + 
Sbjct: 360 ETLNKKFGEKHPTDPGELRVDRLNPQMREVLEHLQPGQASHPLVSMDGIALIMVCKREER 419

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              +   + ++ Q    ++E+   +  + L   A+I
Sbjct: 420 NVALQTPSEIADQLLNERVEQTSRQLDRDLHRRAVI 455


>gi|326405098|ref|YP_004285180.1| putative peptidyl-prolyl cis-trans isomerase SurA [Acidiphilium
           multivorum AIU301]
 gi|325051960|dbj|BAJ82298.1| putative peptidyl-prolyl cis-trans isomerase SurA [Acidiphilium
           multivorum AIU301]
          Length = 427

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 90/290 (31%), Gaps = 12/290 (4%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL--- 65
           +  F+       ++ +   +      + A +  I   +NG VIT+ D++ R  L  L   
Sbjct: 1   MKSFVSY---AALIGLAAGLLAPGAPARAQTVSIAAVVNGTVITNADVAARTRLFALSAG 57

Query: 66  ----QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
                     L+    +ELI + L+ Q IE++ +      +     +      L      
Sbjct: 58  LPTTSATLQRLKPQITRELIDQALQLQAIERNKVVVPEAKIAAALKRVNEANHLPPGSLQ 117

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
             L   GI  +        Q  W DV++            +I A +  MK    +     
Sbjct: 118 KKLAAAGIPLSTLVSQFRTQIGWTDVLRKKLGPDLRPTAADIAAEEAAMKKEIGKTQYHI 177

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             +F   +N   +    ++                    +F+     ++ G   ++    
Sbjct: 178 AEIFIPVENP-ADVANARRFADVVIRQLRAGAPFPVVAAQFSQSQSALTGGDRGWVQPDL 236

Query: 242 LHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA 290
           L P  + +++K      ++P     G E +     R  G        +  
Sbjct: 237 LDPAVRRIVEKMPVGAISDPVRVAGGFEIVNQLGIRQFGVGQRTTLSIRQ 286



 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 8/63 (12%), Positives = 21/63 (33%)

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              + P V+  G+  + +C +      +  K  +       ++       +  L  +A I
Sbjct: 362 GQPSEPLVSSSGIAIVMVCKRETSKIGLPGKKAIEEMLINRRVSLEAQRLMDTLHRDAEI 421

Query: 315 HYY 317
             +
Sbjct: 422 RIF 424


>gi|220924508|ref|YP_002499810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           nodulans ORS 2060]
 gi|219949115|gb|ACL59507.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           nodulans ORS 2060]
          Length = 285

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/286 (11%), Positives = 67/286 (23%), Gaps = 42/286 (14%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIE 91
           +         +   +NG  +T GD++       L                          
Sbjct: 26  NQAPSPAPDTVVARVNGAPVTAGDLAVAADDPALSLPG---------------------- 63

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
                          V +  +  L A+        +    +    Y   + +  + ++ +
Sbjct: 64  -----VSDEQKKGLLVDYMVDLKLGAQAAEKAKVGESPDFSRKLAYFRDKLLLDEYLERE 118

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                         ++         E   R +L              +   K        
Sbjct: 119 AKKAVTPEAARSLYDETVKTLKPEEEVHARHIL-----------VESEAEAKKIAGRIKG 167

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEY 269
                    + +         G   +  +  + P F +   K      ++P  TQ G   
Sbjct: 168 GEDFAKVAAETSKDPGSKAEGGDLGWFTKERMVPAFAEAAFKLDAGKVSDPVKTQFGWHV 227

Query: 270 IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           I + +KR           +  Q       K + + + KLR  A I 
Sbjct: 228 IKVEEKRTKPV--PSFDEMKEQIDTYLTRKTQQDIITKLREQAKIE 271


>gi|153008357|ref|YP_001369572.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ochrobactrum
           anthropi ATCC 49188]
 gi|151560245|gb|ABS13743.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ochrobactrum
           anthropi ATCC 49188]
          Length = 326

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 85/282 (30%), Gaps = 48/282 (17%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQ---KINGELEKIAVQELIVETLKKQEIEKSGIT 96
           S++  T+NG  IT G++ +    L  Q       +    A+  LI       E EK  + 
Sbjct: 56  SKVLATVNGNDITVGEVDQAAGDLDPQFSRLPAEQRRLAALAALIDIKAMAGEAEKEKLD 115

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
                 N                                ++L  +++  +  K+  + K 
Sbjct: 116 QSQEFKNR------------------------------MEFLRERALHNEYFKDAVVDKI 145

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
            + ++    +K+        E   R +L    +                 +      K  
Sbjct: 146 SDDDVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA-----------IIKKLEGGAKFE 194

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT-NPYVTQKGVEYIAICD 274
           +  ++ ++     + G   Y  E  + P+F+           T  P  TQ G   I + D
Sbjct: 195 DLAKESSTDGTAANGGDLGYFAEGQMVPEFEKAAFALKPGEYTKEPVQTQFGFHVIQLED 254

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +R           +  Q     + +   E VKKLR    I Y
Sbjct: 255 RRTKQP--PAFDQVKDQIRSIIMRERYVETVKKLRDGMKIDY 294


>gi|146310266|ref|YP_001175340.1| peptidyl-prolyl cis-trans isomerase SurA [Enterobacter sp. 638]
 gi|145317142|gb|ABP59289.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterobacter sp.
           638]
          Length = 428

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 106/311 (34%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +L+   +V   S+ +  +  ++   +N  V+ + D++  +  +KL              L
Sbjct: 7   LLLGIAMVANTSFAAPQVVDKVAAVVNNGVVLESDVNGMMQSVKLNSGQAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      ++   ++ +   S L   GI   
Sbjct: 67  RHQILERLIMDQIVLQMGQKMGVKVTDEQLDQAIANISKQNNMTLDQMRSRLAYDGISYA 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + +  +V  N+   +   L  E+    +++ N       +      +P  + 
Sbjct: 127 TYRNQIRKEMLISEVRNNEVRRRVTILPQEVDQLAKQVGNQNDASTELNLSHILVPLPEN 186

Query: 193 QNQGFVQKRIKD---AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
                  +         E              +++    +  G+  +    +L   F Q 
Sbjct: 187 PTSDQAAEAESQARSIVEQARNGGDFGKLAITYSADQQALKGGQMGWGRIQELPSIFGQA 246

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
           L    + +   P  +  G   + + D+R    ++        ++  + +P   +      
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDRRGQSQNISVTEVHARHILLKPSPIMTDDQARVK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 MEQI--AADIK 315



 Score = 85.1 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 94/288 (32%), Gaps = 25/288 (8%)

Query: 47  NGEV-----ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           N EV     I   ++ +    +  Q             L    +   E   S    ++ +
Sbjct: 143 NNEVRRRVTILPQEVDQLAKQVGNQNDASTELN-----LSHILVPLPENPTSDQAAEAES 197

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
                V+ ARN G   +   ++   Q         +  IQ +     +            
Sbjct: 198 QARSIVEQARNGGDFGKLAITYSADQQALKGGQMGWGRIQELPSIFGQALSTAKKGDIVG 257

Query: 152 -FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
                 G   +++   + + +NI+V E   R +L         +Q  V K  + A + + 
Sbjct: 258 PIRSGVGFHILKVNDRRGQSQNISVTEVHARHILLKPSPIMTDDQARV-KMEQIAADIKS 316

Query: 211 RLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVE 268
                 N  ++F+         G   +       P F++  +K ++   + P  +  G  
Sbjct: 317 GKTSFANAAKEFSQDPGSANQGGDLGWAAADIYDPAFRDALMKLNKGQMSAPVHSTFGWH 376

Query: 269 YIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            I + D R++   + A K          K  +  A ++++ R++A + 
Sbjct: 377 LIELLDTRNVDKTDAAQKDRAYRMLFNRKFSEEAATWMQEQRASAYVK 424


>gi|311280964|ref|YP_003943195.1| SurA domain-containing protein [Enterobacter cloacae SCF1]
 gi|308750159|gb|ADO49911.1| SurA domain protein [Enterobacter cloacae SCF1]
          Length = 428

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/311 (13%), Positives = 110/311 (35%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +L+   +V   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMVANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDNTL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  N
Sbjct: 67  RHQILERLIMDQIILQMGQKMGVKVSDEQLDQAIASIAKQNNMTMDQMRSRLANDGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP--ANKQKMKNITVREYLIRTVLFSIPDN 190
            ++  +  + I  +V  N+   +   L  E+   A +   +N    E  +  +L  +P+N
Sbjct: 127 TYRSQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQMGNQNDASTELNLSHILIPLPEN 186

Query: 191 KLQNQG-FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
              +Q    + + +   E              +++    +  G+  +    +L   F   
Sbjct: 187 PTSDQVSEAEAQARSVVEQARGGADFGKLAITYSADQQALKGGQMGWGRIQELPSIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   I + D R     +        ++  + +P   +      
Sbjct: 247 LSTAKKGDIIGPIRSGVGFHVIKVNDLRGQSQTISVTEVHARHILLKPSPIMSDDQARAK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQV--AADIK 315



 Score = 82.8 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 90/287 (31%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q  N       +  L    +   E   S    ++    
Sbjct: 143 NNEVRRRITV--LPQEVDALAKQMGNQNDASTELN-LSHILIPLPENPTSDQVSEAEAQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V+ AR      +   ++   Q         +  IQ +     +              
Sbjct: 200 RSVVEQARGGADFGKLAITYSADQQALKGGQMGWGRIQELPSIFAQALSTAKKGDIIGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   + + + I+V E   R +L         +Q    K  + A + +   
Sbjct: 260 RSGVGFHVIKVNDLRGQSQTISVTEVHARHILLKPSPIMSDDQA-RAKLEQVAADIKSGK 318

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                  ++ +         G   +       P F++ + K S+   + P  +  G   I
Sbjct: 319 TTFEKAAKELSQDPGSANQGGDLGWATPDIYDPSFRDAVMKLSKGQVSAPVHSSFGWHLI 378

Query: 271 AICDKRDLG-GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R++   + A K          K  +  A ++++ R++A +  
Sbjct: 379 QLLDTRNVDRTDAAQKDKAYRMLMNRKFSEEAATWMQEQRASAYVKI 425


>gi|114331519|ref|YP_747741.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           eutropha C91]
 gi|114308533|gb|ABI59776.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           eutropha C91]
          Length = 264

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/305 (15%), Positives = 89/305 (29%), Gaps = 46/305 (15%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--EL 72
            LT +  + +  +  + +    A        +NG  I    +   I     Q      E+
Sbjct: 2   RLTKFLCVPLAVLGFVCTTPLSAQGGGTVAKVNGIAIPQSRLDLVIKAATAQGQPDSAEM 61

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
                + LI E +  QE  K G+  + + V                              
Sbjct: 62  RNALRENLITEEVLTQEAIKKGLDRNPDVVTQI--------------------------- 94

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                LA Q I     + DFM      + E+    + +K+    +      +    + + 
Sbjct: 95  ----DLARQGILIRAYQADFMRNNPVSDDELRKEYESVKSQMGDKEYKARHILVETEQEA 150

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
           ++     K+    E+            E+        + G+  +   +     F + L K
Sbjct: 151 KDLVASLKKGGVFEKL---------AGERSIDTGSKSNGGELGWSSAAVYVKPFSDALTK 201

Query: 253 SQNN--TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
            +    T+ P  T  G   I + D R           +        +++  A  V+ LR 
Sbjct: 202 LKKGETTSQPVQTPFGWHVIRLDDVRTAVP--PSFDEVKQNMQQRVLQRKFAAVVESLRK 259

Query: 311 NAIIH 315
           NA + 
Sbjct: 260 NAKVE 264


>gi|291616238|ref|YP_003518980.1| SurA [Pantoea ananatis LMG 20103]
 gi|291151268|gb|ADD75852.1| SurA [Pantoea ananatis LMG 20103]
 gi|327392689|dbj|BAK10111.1| chaperone SurA precursor [Pantoea ananatis AJ13355]
          Length = 431

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/310 (11%), Positives = 104/310 (33%), Gaps = 18/310 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   +    ++ +  +  ++   +N  V+ + D+   ++ +K Q             L
Sbjct: 7   LILGVALSANTAFAAPQVVDKVAAVVNNGVVLESDVDSMMSTVKSQAKQAGQQLPDDKTL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++  I++ +  Q  +K+G+      ++      A    +S +   S L   G+  N
Sbjct: 67  RHQILEREIMDAIILQLGDKAGLQITDQQLDQAIQNIAAQNRMSVDQLRSRLAYDGMNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + +  +V  N+   +   L  E+    Q++     +   +      +P  + 
Sbjct: 127 TYRAQIRKEMLISEVRNNEVRRRVTILPQEVDTLAQQVGAQNTQGTEMNISHILLPLPEN 186

Query: 193 QNQGFV---QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
             Q  V   +K  K                  +++    +  G   +    +L   F   
Sbjct: 187 PTQQQVDDQEKLAKQLITELKGGADFGKLAVTYSADSQALKGGNMGWAKIEELPTLFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   +      
Sbjct: 247 LTTAKKGDIVGPIRSGVGFHILKVNDLRGESKNVSVTEVHARHILLKPSPIMTDDQARAK 306

Query: 305 VKKLRSNAII 314
           ++++   A I
Sbjct: 307 LEQI--AADI 314



 Score = 84.7 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 83/289 (28%), Gaps = 25/289 (8%)

Query: 47  NGEV-----ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           N EV     I   ++      +  Q   G    I+   L        E        D   
Sbjct: 143 NNEVRRRVTILPQEVDTLAQQVGAQNTQGTEMNISHILL-----PLPENPTQQQVDDQEK 197

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
           +    +   +      +   ++             +  I+ +     +            
Sbjct: 198 LAKQLITELKGGADFGKLAVTYSADSQALKGGNMGWAKIEELPTLFAQALTTAKKGDIVG 257

Query: 152 -FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
                 G   +++   + + KN++V E   R +L         +Q    K  + A + R 
Sbjct: 258 PIRSGVGFHILKVNDLRGESKNVSVTEVHARHILLKPSPIMTDDQA-RAKLEQIAADIRS 316

Query: 211 RLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVE 268
                    ++F+         G   +       P F++ L +  +  T+ P  +  G  
Sbjct: 317 GKTTFAAAAKQFSDDPGSANQGGDLGWTSPEVFDPAFRDALLRLKKGETSQPVHSSFGWH 376

Query: 269 YIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            I + D R +   + A K          K  +    ++++ R+ A +  
Sbjct: 377 LIQLLDTRQVDKTDAAQKERAYRMLFNRKFAEEAQTWMQEQRAGAYVKI 425


>gi|218547503|ref|YP_002381294.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia fergusonii
           ATCC 35469]
 gi|218355044|emb|CAQ87650.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia
           fergusonii ATCC 35469]
 gi|324112544|gb|EGC06521.1| ppic-type ppiase domain-containing protein [Escherichia fergusonii
           B253]
          Length = 428

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 107/311 (34%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDIS--------KRIALLKLQKINGEL 72
           +L+   ++   S+ +  +  ++   +N  V+ + D++              +    +  L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVNGLLQSVKLNAAQAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  N
Sbjct: 67  RHQILERLIMDQILLQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + I  +V  N+   +   L  E+ +  Q++ N       +      IP  + 
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRISILPQEVESLAQQVGNQNDASTELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
            +   V +    A     +             +++    +  G+  +    +L   F   
Sbjct: 187 PSSDQVNEAESQARAIVDQARNGADFGKLAISYSADQQALKGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   ++     
Sbjct: 247 LSTAKKGDVVGPIRSGVGFHILKVNDLRGGSQNISVTEVHARHILLKPSPIMTDEQARVK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQI--AADIK 315



 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 85/273 (31%), Gaps = 16/273 (5%)

Query: 58  KRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
           + +  L  Q  N       +  L    +   E   S    ++ +     V  ARN     
Sbjct: 155 QEVESLAQQVGNQNDASTELN-LSHILIPLPENPSSDQVNEAESQARAIVDQARNGADFG 213

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------FMLKYGNLEMEIPAN 166
           +   S+   Q         +  IQ +     +                  G   +++   
Sbjct: 214 KLAISYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDVVGPIRSGVGFHILKVNDL 273

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
           +   +NI+V E   R +L          Q  V K  + A + +          ++F+   
Sbjct: 274 RGGSQNISVTEVHARHILLKPSPIMTDEQARV-KLEQIAADIKSGKTTFAAAAKEFSQDP 332

Query: 227 -HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDL-GGEIA 283
                 G   +       P F++   + ++   + P  +  G   I + D R++   + A
Sbjct: 333 GSANQGGDLGWATADIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAA 392

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            K          K  +  A ++++ R++A +  
Sbjct: 393 QKDRAYRMLMNRKFSEEAASWMQEQRASAYVKI 425


>gi|322713110|gb|EFZ04681.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 428

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 113/311 (36%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  +
Sbjct: 67  RHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANIAKQNNMTMDQMRSRLAYDGLNYS 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP--ANKQKMKNITVREYLIRTVLFSIPDN 190
            ++  +  + I  +V  N+   +   L  E+   A +   +N    E  +R +L ++P+N
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDASTELNLRHILIALPEN 186

Query: 191 KLQNQGFVQKRIKDAE-ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
               Q    +R  ++  E              +++    +  G+  +    +L   F   
Sbjct: 187 PTSEQVNDAQRQAESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R     +        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMNDQQARLK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEEI--AADIK 315



 Score = 84.0 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 89/287 (31%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q          +  L    +   E   S    D+    
Sbjct: 143 NNEVRRRITV--LPQEVDALAKQIGTQNDASTELN-LRHILIALPENPTSEQVNDAQRQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V+ ARN     +   ++   Q         +  IQ +     +              
Sbjct: 200 ESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   + + ++I+V E   R +L         +Q    K  + A + +   
Sbjct: 260 RSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMN-DQQARLKLEEIAADIKSGK 318

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYI 270
                  ++++         G   +       P F++ L K      + P  +  G   I
Sbjct: 319 TTFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKLHKGQISAPVHSSFGWHLI 378

Query: 271 AICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R +   + A K          K  +  A ++++ R++A +  
Sbjct: 379 ELLDTRKVDKTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKI 425


>gi|90420209|ref|ZP_01228117.1| peptidyl-prolyl cis-trans isomerase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335543|gb|EAS49293.1| peptidyl-prolyl cis-trans isomerase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 320

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/314 (11%), Positives = 83/314 (26%), Gaps = 50/314 (15%)

Query: 10  SDFIKLLTTY--FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ- 66
             F  + T +   +L    +       + A    +   +  E IT+ D+    A +  Q 
Sbjct: 22  RTFFAMNTAFRSTLLAGALVFAAFGTAAHAADEDVVARVGSEEITERDLKAAAAEVGEQF 81

Query: 67  --KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                 + +   +  LI   +  ++ E   +  D                          
Sbjct: 82  ARLPADQRKLAVLSALIDIKVLARQAEAEALQDDPEVAAQI------------------- 122

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
                       +L  +++       + +      E++    K+        E   R +L
Sbjct: 123 -----------DFLRERTLHNAYFARNGVANITEEELKARFEKEVAAMPATEEVHARHIL 171

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
               +                              ++ ++       G   +     + P
Sbjct: 172 LKTKEEAEA-----------VIAKLDGGADFVELAKESSTGPSGPEGGDLGFFSAGQMVP 220

Query: 245 QFQNLLKKSQNNTT--NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEA 302
           +F+ +    +  T    P  TQ G   I + +KR+          +  Q     + +   
Sbjct: 221 EFEKVAFTMEPGTYTKEPVQTQFGWHVIKVEEKREAP--KPEFDAVKDQVRQVVLREKYM 278

Query: 303 EYVKKLRSNAIIHY 316
             V+K R +  + Y
Sbjct: 279 GLVQKARDDLPVEY 292


>gi|255530403|ref|YP_003090775.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter heparinus
           DSM 2366]
 gi|255343387|gb|ACU02713.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter heparinus
           DSM 2366]
          Length = 455

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/290 (10%), Positives = 86/290 (29%), Gaps = 13/290 (4%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--L 72
           +   + +   F  + + +        ++   +   +I   D++++ A         +  +
Sbjct: 1   MKKIFLIASGFICLFLNAQAQKKNIDKVVAVLGSNIILLSDLNQQYAQFLNSGNTDDPKV 60

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +   +Q+++ + L KQ+ E   +  D   V+    +  R     A               
Sbjct: 61  KCYILQQMLAQKLLKQQAEIDSVMVDDGQVDEEVEKRMRYQIQRAGGQERLEQFLNRSVL 120

Query: 133 HFKQYLAIQSIWPDV---VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
            +K  +        +   ++           +E+       +  ++ +      +  I  
Sbjct: 121 QYKDEIRPDIKEQLISNKMQAKITQDVSITPLEVKKYFDGYQKDSLPDIPTEFEIGEIVM 180

Query: 190 NKLQNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQ 245
                +   QK     +  RLR           + ++         G   +   + +  +
Sbjct: 181 YPKLTKAEKQKYYDKIDALRLRVKSGEDFAFLAKSYSEDPGSAADGGDLGFFDRTRMVKE 240

Query: 246 FQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP 294
           F     K      +  + T+ G   + + ++R   GE     ++  +   
Sbjct: 241 FTAWAFKLKPGEMSPVFETEHGFHILQVVERR---GEQVQARHILIRPQN 287



 Score = 42.4 bits (97), Expect = 0.082,   Method: Composition-based stats.
 Identities = 27/288 (9%), Positives = 68/288 (23%), Gaps = 19/288 (6%)

Query: 48  GEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
              IT  ++ K     +   +     +  + E+++     +  ++               
Sbjct: 146 DVSITPLEVKKYFDGYQKDSLPDIPTEFEIGEIVMYPKLTKAEKQKYYDKIDALRLRVKS 205

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
                    +          G     F +   ++       K          E E   + 
Sbjct: 206 GEDFAFLAKSYSEDPGSAADGGDLGFFDRTRMVKEFTAWAFKLKPGEMSPVFETEHGFHI 265

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS-KI 226
            ++      +   R +L    +          +     +    +          ++  K 
Sbjct: 266 LQVVERRGEQVQARHILIRPQNTPASLDRVKLQADTIYKNLVGKKIPFSTAASLYSDNKE 325

Query: 227 HDVSIGKA----------QYLLESDL-HPQFQNLLKKSQNNTTNP-----YVTQKGVEYI 270
              + G             ++    L    F  +        + P        + G + +
Sbjct: 326 SQYNGGMLLYADNVTARTTFIPADKLDPKVFLIVDTMKVGEISAPTLFTDQSGKDGYKIL 385

Query: 271 AICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            +  K     G      A    +    K +K  +E+ +K R N  I  
Sbjct: 386 YLKSKIPPHKGNLDQDYAKFKEKAQQEKTDKVLSEWFEKRRENTYIRI 433


>gi|161504788|ref|YP_001571900.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866135|gb|ABX22758.1| hypothetical protein SARI_02912 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 428

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 107/311 (34%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  +
Sbjct: 67  RHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYS 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + I  +V  N+   +   L  E+ A  +++         +      I   + 
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDANTELNLSHILIALPEN 186

Query: 193 QNQGFVQKRIKDAE---ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
              G V    + AE   E              +++    +  G+  +    +L   F   
Sbjct: 187 PTSGQVNDAQRQAESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGQSPNISVTEVHARHILLKPSPIMTDQQARLK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEEI--AADIK 315



 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 89/287 (31%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q          +  L    +   E   SG   D+    
Sbjct: 143 NNEVRRRITV--LPQEVDALAKQIGTQNDANTELN-LSHILIALPENPTSGQVNDAQRQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V+ ARN     +   ++   Q         +  IQ +     +              
Sbjct: 200 ESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   + +  NI+V E   R +L         +Q    K  + A + +   
Sbjct: 260 RSGVGFHILKVNDLRGQSPNISVTEVHARHILLKPSPIMT-DQQARLKLEEIAADIKSGK 318

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYI 270
                  ++++         G   +       P F++ L K      + P  +  G   I
Sbjct: 319 TTFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKLHKGQMSAPVHSSFGWHLI 378

Query: 271 AICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R +   + A K          K  +  A ++++ R++A +  
Sbjct: 379 ELLDTRKVDKTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKI 425


>gi|291326505|ref|ZP_06124797.2| peptidylprolyl cis-trans isomerase SurA [Providencia rettgeri DSM
           1131]
 gi|291313964|gb|EFE54417.1| peptidylprolyl cis-trans isomerase SurA [Providencia rettgeri DSM
           1131]
          Length = 460

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/321 (12%), Positives = 107/321 (33%), Gaps = 17/321 (5%)

Query: 8   SLSDFIKLLTTYFVLII-FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ 66
            ++ +  ++  +  LI+        +  +     ++   +N  V+ + D+   I  +KL 
Sbjct: 14  KVNIYRTIMKNWRTLILGLMFASSTALAAPQQMDKVAAVVNNGVVLESDVQNMINTVKLN 73

Query: 67  KIN--------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
             N          L    ++ L+++ +  Q   +  I      V+      AR  GL+ +
Sbjct: 74  AQNARQQVPDDQTLRHQILERLVMDNIILQMASQMQINIPDEAVDATITDIARQNGLTLQ 133

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
                L   GI  N ++  +  + +  +V  N+   +   L  E+ +  ++M +    E 
Sbjct: 134 QMQQRLTADGINMNQYRSEIRKEMLIAEVRNNEVRRRVTILPQEVDSLAEQMSSQANYEM 193

Query: 179 LIRTVLFSIPDNKLQNQGF---VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
            +      IP  +   Q      +  +        +          +++    +  G   
Sbjct: 194 GVNLSHILIPLAENPTQEQLKTAEALVDKILAELKKGGDFGKLAIAYSADPQALKGGNMG 253

Query: 236 YLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDK----RDLGGEIALKAYLSA 290
           +    +L   F + L    + +   P  +  G   + + D     + +        ++  
Sbjct: 254 WSRLQELPVVFAEQLKNAKKGDVVGPIRSGVGYHILRVNDVSGGSQPISVTEVKARHILI 313

Query: 291 QNTPTKIEKHEAEYVKKLRSN 311
           +++P   +    + + K+   
Sbjct: 314 KSSPIMDDAQARQKLTKIAQE 334



 Score = 79.3 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 51/138 (36%), Gaps = 3/138 (2%)

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLES 240
             +       + +    QK  K A+E R       +  ++ +      +  G+  + +  
Sbjct: 309 RHILIKSSPIMDDAQARQKLTKIAQEIRSGKISFEDAAKENSEDPGSALKGGELGWNMPD 368

Query: 241 DLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIE 298
              P F++  ++ ++   + P  +  G   I + D R++   + A K          K  
Sbjct: 369 IYDPAFRDALMRLNKGELSQPVQSNFGWHLIQLEDTRNVDKTDAAQKDQAYRLLFNRKFN 428

Query: 299 KHEAEYVKKLRSNAIIHY 316
           +    ++++ R++A +  
Sbjct: 429 EEAQSWMQEQRASAYVKI 446


>gi|86359353|ref|YP_471245.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli CFN 42]
 gi|86283455|gb|ABC92518.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli CFN 42]
          Length = 293

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 80/301 (26%), Gaps = 49/301 (16%)

Query: 22  LIIFCIVPIVSYKSWA-MSSRIRTTINGEVITDGDISKRIALL---KLQKINGELEKIAV 77
             +      V++++ A     +   +    I   ++   +A L     Q  + + +  A+
Sbjct: 7   FAVLAFATFVAFQAPAHAEDAVVAKVGNLEIHQSELDLAVANLDPQLAQLPDDQKKVAAL 66

Query: 78  QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY 137
              I   L                               A   ++   +Q        QY
Sbjct: 67  SAAIDVKLL------------------------------AAGATTEKLEQTDEFKKRMQY 96

Query: 138 LAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGF 197
           L  + +     K   +      E++   +K+        E   R +L    D        
Sbjct: 97  LTDRELHNAYFKKHVVDTVTPDEIKARYDKEVAALPKQEEVHARHILVKTEDEAKDIIKQ 156

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNN 256
           +                     ++ ++  +    G   Y     +  +F++      +  
Sbjct: 157 LDA-----------GKDFAELAKEKSTDPNKSEGGDLGYFSRGRMVKEFEDAAFALEKGA 205

Query: 257 TTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            +  P  T  G   I + DKRD          +  Q     +       + + +S+A I 
Sbjct: 206 YSKTPVKTDFGYHVIKVEDKRDAPP--PPFDQVQDQVRQLVMRDKYLALLNQAKSSAKIE 263

Query: 316 Y 316
            
Sbjct: 264 I 264


>gi|126734461|ref|ZP_01750208.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseobacter sp.
           CCS2]
 gi|126717327|gb|EBA14191.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseobacter sp.
           CCS2]
          Length = 280

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/307 (11%), Positives = 79/307 (25%), Gaps = 51/307 (16%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI---SKRIALLKLQKI 68
            +K +T      +  ++   ++     +  +  T+    IT G+I     ++     Q  
Sbjct: 1   MLKHVTFLGATAMATVLSTGAFAQDVTAETVVATVGDTEITMGEIIIARTQLPPQYAQLP 60

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
              L    V +LI + L   E +      +    N                         
Sbjct: 61  ADALFNGLVDQLIQQQLLADEADGVSAQIEYTLSNE------------------------ 96

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                         I  DV+ +         +++   + +      ++E+    +L    
Sbjct: 97  ----------RRALIAADVITSIADNAVTEADVQTAYDARFENAEEIQEFNAAHLL---- 142

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
                     ++    A+          +     ++     + G   +     + P F+ 
Sbjct: 143 -------VETEEEAIAAKARIDEGAAFADVARDVSTGPTGPNGGNLGWFGPGAMVPTFEE 195

Query: 249 LLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
            +        + P+ TQ G     + + R           L  Q      E      + +
Sbjct: 196 AVMGLDVGGVSEPFETQFGWHVATLLETRVQP--RPTIDDLRPQIAQELQEAAITARLDE 253

Query: 308 LRSNAII 314
           L     I
Sbjct: 254 LAEAQTI 260


>gi|189218309|ref|YP_001938951.1| Parvulin-like peptidyl-prolyl isomerase [Methylacidiphilum
           infernorum V4]
 gi|189185167|gb|ACD82352.1| Parvulin-like peptidyl-prolyl isomerase [Methylacidiphilum
           infernorum V4]
          Length = 332

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/310 (12%), Positives = 88/310 (28%), Gaps = 26/310 (8%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALL-----------KLQKINGELEKIAVQELIV 82
                S  I   +N +VIT   + K++              +L     E    A++ LI 
Sbjct: 23  SQTQGSDGIAAIVNDKVITFSQVRKQVEPNEAVLRETYQGSELVNRIKEARLSALRALID 82

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHAR-NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
             L  Q+ +        + +        R         F   L   GI +  +KQ L  Q
Sbjct: 83  RELIIQDFKSKKYAIPDSFIESRVRDIIRTQFDGDRIAFIRTLQASGISEEQYKQQLLEQ 142

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS-----------IPDN 190
            I   +   +          +I    Q           ++  +               + 
Sbjct: 143 IIVQAMRMKNVSEPVIISPYQIEKYYQDHIAQFFEPPQVKLRIIFLQKTSFKDKRATVNG 202

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL-HPQFQNL 249
           +L+     ++   +                 ++     +  G   ++ +  L     +  
Sbjct: 203 QLEEYDPARETATELLSKLQLGADFAELARSYSEGPKRMDGGDLGWVTKDSLRPEIAEAA 262

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKK 307
                  T+    T  G   I + DKR    +    ++  +       + +K + +++  
Sbjct: 263 FSMYPGQTSGVIETLDGYYIIRLEDKRKGKLKPISEVRTQIEGLLIQEQRQKLQQQWLDN 322

Query: 308 LRSNAIIHYY 317
           L++ A I  +
Sbjct: 323 LKAKAFIKMF 332


>gi|254294289|ref|YP_003060312.1| SurA domain protein [Hirschia baltica ATCC 49814]
 gi|254042820|gb|ACT59615.1| SurA domain protein [Hirschia baltica ATCC 49814]
          Length = 426

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 105/303 (34%), Gaps = 18/303 (5%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRI---------RTTINGEVITDGDISKRIAL----L 63
               +       PI  +   A +S +            +N + I+  D+ +R       L
Sbjct: 11  IAPVIASFLAYAPIPVHAQSADASNVPQIEAVEGTVAIVNDQPISYSDVRQRAQFILVSL 70

Query: 64  KLQKINGELEKI---AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
            +Q     + +    A++ LI E L+ QE E   +  +   ++      A  +  + EDF
Sbjct: 71  GVQPNAETIRQAQTRAIEGLIDEKLQLQEAETYELVVEEAEIDDSIANIAARSNATPEDF 130

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
              L + G+     +  +     W  +V   F  +     ++I  N +++          
Sbjct: 131 LQGLAQVGLSPRTLRDQIRADIAWRRLVGGRFGSRVRISSLQIDDNLERLNKSMEEPQYR 190

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
              +F     + +     Q   +   +   +         +F++     + G+  +L ES
Sbjct: 191 IAEIFLPGITQEEISVVYQGAEELKRQIENQAAPFEAVARQFSAAPTASAGGEIGWLGES 250

Query: 241 DLHPQFQNLLKKSQN-NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
            L  ++ + ++       T+P VT  GV  +++ +K     E AL  +   Q   T  + 
Sbjct: 251 QLKKEYADQVRALSKPGLTDPIVTDNGVYLVSLMNK-QAPVEEALVGFKLKQIYATGADA 309

Query: 300 HEA 302
              
Sbjct: 310 VSK 312



 Score = 42.4 bits (97), Expect = 0.089,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 44/103 (42%), Gaps = 2/103 (1%)

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVT-QKGVEYIA 271
           ++C  L+  ++    V+         ++L  Q+Q+L   +S N+ + P +        + 
Sbjct: 321 ENCAALDNESASQEGVAFVDFGVTQLTELSQQYQDLFNAQSDNSHSAPIMVADNKAAIVY 380

Query: 272 ICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           +C      G +  +A +  +     ++   + Y++ LR +A I
Sbjct: 381 VCSHEMSRGNMPTRADIEDKLHGEMVDMMASRYLRDLRRDATI 423


>gi|283835117|ref|ZP_06354858.1| peptidylprolyl cis-trans isomerase SurA [Citrobacter youngae ATCC
           29220]
 gi|291069416|gb|EFE07525.1| peptidylprolyl cis-trans isomerase SurA [Citrobacter youngae ATCC
           29220]
          Length = 428

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 104/311 (33%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L + G+  +
Sbjct: 67  RHQILERLIMDQILLQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAQDGLNYS 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  +    +V  N+   +   L  E+ A  Q++ N       +      IP  + 
Sbjct: 127 TYRSQIRKEMTISEVRNNEVRRRVTILPQEVDALAQQVGNQNDASTELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKD---AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                V           +              +++    +  G+  +    +L   F   
Sbjct: 187 PTSDQVNAAESQARSVVDEARNGSDFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R     +        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIIGPIRSGVGFHILKVNDMRGQSQSISVTEVHARHILLKPSPIMTDQQARLK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQI--AADIK 315



 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 86/289 (29%), Gaps = 25/289 (8%)

Query: 47  NGEV-----ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           N EV     I   ++      +  Q             L    +   E   S     + +
Sbjct: 143 NNEVRRRVTILPQEVDALAQQVGNQNDASTELN-----LSHILIPLPENPTSDQVNAAES 197

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
                V  ARN     +   ++   Q         +  IQ +     +            
Sbjct: 198 QARSVVDEARNGSDFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIIG 257

Query: 152 -FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
                 G   +++   + + ++I+V E   R +L         +Q    K  + A + + 
Sbjct: 258 PIRSGVGFHILKVNDMRGQSQSISVTEVHARHILLKPSPIMT-DQQARLKLEQIAADIKS 316

Query: 211 RLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVE 268
                    ++F+         G   +       P F++   K ++   + P  +  G  
Sbjct: 317 GKTTFAAAAKEFSQDPGSANQGGDLGWAAADIFDPAFRDALTKLNKGQMSAPVHSSFGWH 376

Query: 269 YIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            I + D R +   + A K          K  +  A ++++ R++A +  
Sbjct: 377 LIELLDTRKVDKTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKI 425


>gi|163850906|ref|YP_001638949.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           extorquens PA1]
 gi|163662511|gb|ABY29878.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           extorquens PA1]
          Length = 300

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/278 (11%), Positives = 66/278 (23%), Gaps = 42/278 (15%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS 99
             +   +NG+ IT  D++       L                                D 
Sbjct: 47  ETVVARVNGQAITAADLAIAAEDPALSLPG---------------------------VDE 79

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
                  V +  +  + A+   S              Y   + +  D ++ +        
Sbjct: 80  GAKQNLLVDYMVDLKVGAQAAESAEVGDAPEFKRKLAYFRDKLLLDDYLEREAKKAVTPE 139

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
             +    +         E   R +L              +   K                
Sbjct: 140 AAKALYEQTVKSMKPEEEVRARHIL-----------VESEDEAKKIAARVKGGEDFAKIA 188

Query: 220 EKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRD 277
            + +         G   +  +  +   F +   K +    ++P  TQ G   + + +KR 
Sbjct: 189 GEVSKDPGSKTEGGDLGWFSQERMVKPFADAAFKMTPGQVSDPVKTQFGWHVLRVEEKRT 248

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                     +  Q       K + + + KLR  A + 
Sbjct: 249 KPV--PTFDEMKEQIDQYLTRKAQQDTIVKLREAAKVE 284


>gi|37679292|ref|NP_933901.1| parvulin-like peptidyl-prolyl isomerase [Vibrio vulnificus YJ016]
 gi|37198035|dbj|BAC93872.1| parvulin-like peptidyl-prolyl isomerase [Vibrio vulnificus YJ016]
          Length = 625

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/406 (10%), Positives = 103/406 (25%), Gaps = 92/406 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + SY     S+     +    I  G+     
Sbjct: 7   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYLVSGSSNS-AAKVGNVEIGRGEFEMAY 65

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +  +                    K  +  +I + L  Q  E  G+      V  
Sbjct: 66  QNERNRMQSQLGDYFSQLLADPAYVESFRKSVLDRMINDVLLDQHAESLGLRISDAQVRS 125

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                 +  ++   + + + + L + G   + F +Y+  + I   ++             
Sbjct: 126 MILAMPEFQQDGKFNQDVYQATLRRAGYSPDSFAEYMRRELIRSQLLDALQTSEFTLPGE 185

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRT------ 182
                                 DF  K    E +I     + K+   R   ++       
Sbjct: 186 VDAEGKLFTQTRDVRTVTLNIRDFADKVTLTEEDIQKYYDENKSRFTRPEQVKVSYIELA 245

Query: 183 -------------VLFSIPDNKLQNQGFVQKRIKDAE--------------ESRLRLPKD 215
                         +       L      +KR                   +        
Sbjct: 246 ADSLKQQITISDDEVKQYYQEHLDKYSSEEKRRVAHILIEGDDQAKAQAILDELNAGADF 305

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               +  +       + G+  ++    + P F+      K+  + T    +  G   I +
Sbjct: 306 AALAQDKSDDFGSADNGGELGWIERGVMDPAFEEAAFALKNVGDVTGLVKSDFGYHIIKL 365

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + ++  +     + A +  +    K      E   +L   A   Y
Sbjct: 366 EELKEPVVKPFSDVAAQIKQEMIDQKAVDQFYELQSELEKVAF-EY 410


>gi|330722348|gb|EGH00205.1| hypothetical protein imdm_1574 [gamma proteobacterium IMCC2047]
          Length = 260

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 82/281 (29%), Gaps = 42/281 (14%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             T+NG VIT   I + +          +L   A++ L+   L  QE             
Sbjct: 8   LVTVNGVVITREQIERELQS-ATGDDPDKLRDNAIRALVSRELLLQE------------- 53

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM- 161
                                                 + +   ++ N   +   + E  
Sbjct: 54  ----------------------AVNWGLCERASVVNNPEQVIEQLLSNKIEVPVPDDESC 91

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN-KLE 220
           E   N+ +    T  E  +  + FS P    + +   ++R  +  E   + P+       
Sbjct: 92  ERFFNENRESFATAPECEVSHIFFSAPIADHEAREAARQRASEVLEKIHQNPQCFERMAR 151

Query: 221 KFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTN-PYVTQKGVEYIAICDKRDL 278
           + +      + G    + +    P F+  L      + +  P  T  G   I + D+ D 
Sbjct: 152 QESGCASAANGGYLGRISKGQTVPAFETALMAMHRGDISEQPVETGGGFHIIRVDDREDG 211

Query: 279 G--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
                  LK ++         +K    YV  L S A I  +
Sbjct: 212 EDLPFEILKTWIRQNLINQSRQKAIDGYVNGLASKAQIEGF 252


>gi|218529730|ref|YP_002420546.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           chloromethanicum CM4]
 gi|240138037|ref|YP_002962509.1| putative cell-binding factor 2 precursor (Major antigen peb4A),
           cbf2 [Methylobacterium extorquens AM1]
 gi|218522033|gb|ACK82618.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           chloromethanicum CM4]
 gi|240008006|gb|ACS39232.1| putative cell-binding factor 2 precursor (Major antigen peb4A),
           cbf2 [Methylobacterium extorquens AM1]
          Length = 300

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/278 (11%), Positives = 66/278 (23%), Gaps = 42/278 (15%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS 99
             +   +NG+ IT  D++       L                                D 
Sbjct: 47  ETVVARVNGQAITAADLAIAAEDPALSLPG---------------------------VDE 79

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
                  V +  +  + A+   S              Y   + +  D ++ +        
Sbjct: 80  GAKQNLLVDYMVDLKVGAQAAESAKVGDAPEFKRKLAYFRDKLLLDDYLEREAKKAVTPE 139

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
             +    +         E   R +L              +   K                
Sbjct: 140 AAKALYEQTVKSMKPEEEVRARHIL-----------VESEDEAKKIAARVKGGEDFAKIA 188

Query: 220 EKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRD 277
            + +         G   +  +  +   F +   K +    ++P  TQ G   + + +KR 
Sbjct: 189 GEVSKDPGSKTEGGDLGWFSQERMVKPFADAAFKMTPGQVSDPVKTQFGWHVLRVEEKRT 248

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                     +  Q       K + + + KLR  A + 
Sbjct: 249 KPV--PTFDEMKEQIDQYLTRKAQQDTIVKLREAAKVE 284


>gi|84514873|ref|ZP_01002236.1| PPIC-type PPIASE domain protein [Loktanella vestfoldensis SKA53]
 gi|84511032|gb|EAQ07486.1| PPIC-type PPIASE domain protein [Loktanella vestfoldensis SKA53]
          Length = 270

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/297 (9%), Positives = 78/297 (26%), Gaps = 51/297 (17%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK---INGELEKIAVQE 79
            +   +   +      +  +   +    IT G++    ++L  Q     +  L    V +
Sbjct: 2   AVSLSITTGAVAQDVTADTVVAKVGDTEITVGELIIARSMLPAQYAQFPDEVLFTGLVDQ 61

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           L+ + L    +E +  +      N                                    
Sbjct: 62  LVQQQLLADALETTPPSVIYTIQNEQ---------------------------------- 87

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
              +   V+ +          ++     +        E+    +L +  D     +  + 
Sbjct: 88  RSLMAAQVIDDITQTSINQELLQEAYQDRFADAPETPEFRAAHLLVATEDEANAAKAQLD 147

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT 258
                            +     ++ +   + G   +     +  +F+  +     +  +
Sbjct: 148 A-----------GEAFADVAAAVSTDVTSANGGDLGWFGAGAMVEEFETAVMALEIDEIS 196

Query: 259 NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +P+ TQ G   + + D+R           +  Q +    E     Y+ +L +   + 
Sbjct: 197 DPFETQFGWHIVTLTDQRARPA--PTFEQVVQQLSAELQEAAVIAYLDELSAATTVE 251


>gi|319653565|ref|ZP_08007664.1| hypothetical protein HMPREF1013_04281 [Bacillus sp. 2_A_57_CT2]
 gi|317394764|gb|EFV75503.1| hypothetical protein HMPREF1013_04281 [Bacillus sp. 2_A_57_CT2]
          Length = 292

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/308 (11%), Positives = 100/308 (32%), Gaps = 26/308 (8%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K +  + +  +  I    +            T+NGE I+  ++ +R+          +  
Sbjct: 4   KKVIYWILGSVVTIGAAAAIFFTIKEDDAAATVNGEEISRDELHERLV--------AQYG 55

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           +  +  LI E +  QE +K  +      ++     +A + G   +     L+  G+    
Sbjct: 56  QELLDSLITEKVIDQEAKKENVKVTQEEIDEEKAVYAESYG-GEDALKQTLESSGLSMAD 114

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
           F++ +        +++     +    E  +     + K    +E  +      + D +  
Sbjct: 115 FEEDIESYLATKKLLE----PRIEISEEAMKTYFDENKESFAQEEQVSASHILVEDEETA 170

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS-IGKAQYLLESDLHPQFQNLLKK 252
                     +                ++++   +    G   +  + D+  +F+ +   
Sbjct: 171 K---------EVIGKLNDGGDFAKLAAEYSTDESNKDAGGDLGFFGKGDMVEEFEEVAFS 221

Query: 253 -SQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
                 ++P  T+ G   I + +K++        +K  +      T+++     ++++  
Sbjct: 222 LEPGKISDPVKTEYGYHVIKVAEKQEAKEAAYEDVKEEVKNTLFETEMQTEYTAWLEEKF 281

Query: 310 SNAIIHYY 317
               I  Y
Sbjct: 282 EEYEIKNY 289


>gi|322834453|ref|YP_004214480.1| SurA domain protein [Rahnella sp. Y9602]
 gi|321169654|gb|ADW75353.1| SurA domain protein [Rahnella sp. Y9602]
          Length = 431

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/319 (11%), Positives = 99/319 (31%), Gaps = 20/319 (6%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK----- 67
           +K   T  + +  C     ++ +     ++   +N  V+   D+      +K Q      
Sbjct: 1   MKNWRTLLLGVTLCAST--AFAAPQEVDKVAAVVNNGVVLQSDVDSLFNSVKQQAQQAKQ 58

Query: 68  ---INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
               +  L    +  LI++ ++ Q   + GIT     V+      A+   +S +   S L
Sbjct: 59  QLPDDATLRHQILDRLIMDQIQLQMATRMGITPTDQDVDKAIAGIAQQNNISVDQLRSRL 118

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
              G+  + ++  +  + I  +V  ++   +   L  E+    +++              
Sbjct: 119 AYDGMNYSTYRTQIRKEMIISEVRNSEVRRRVTILPQEVDQLAKQVAAQNGSGAEFNLSH 178

Query: 185 FSIPDNKLQNQGFV---QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             +P  +   Q  V   ++  K                  +++    +  G   +    +
Sbjct: 179 ILLPLPENPTQDQVDSAEQLAKKIVADLNNGADFGKLAITYSADSQALKGGNMGWGKLQE 238

Query: 242 LHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTK 296
           L   F        +     P  +  G   + + D R     +        ++  + +   
Sbjct: 239 LPSLFAQALSTAQKGQVIGPIRSGVGFHILKVNDIRGDNKTVSVTEVHARHILLKPSVVM 298

Query: 297 IEKHEAEYVKKLRSNAIIH 315
            +      ++++   A I 
Sbjct: 299 TDAQARAKLEQV--AADIK 315



 Score = 91.7 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/280 (11%), Positives = 78/280 (27%), Gaps = 20/280 (7%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++ +    +  Q  +G     A   L    L   E         +  +    V   
Sbjct: 152 ILPQEVDQLAKQVAAQNGSG-----AEFNLSHILLPLPENPTQDQVDSAEQLAKKIVADL 206

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------FMLKYGNL 159
            N     +   ++             +  +Q +     +                  G  
Sbjct: 207 NNGADFGKLAITYSADSQALKGGNMGWGKLQELPSLFAQALSTAQKGQVIGPIRSGVGFH 266

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
            +++   +   K ++V E   R +L          Q    K  + A + +       ++ 
Sbjct: 267 ILKVNDIRGDNKTVSVTEVHARHILLKPSVVMTDAQA-RAKLEQVAADIKSGKATFADEA 325

Query: 220 EKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRD 277
           ++ +         G   +       P F++  +   +   + P  +  G   I + D R 
Sbjct: 326 KQLSQDPGSANQGGDLGWASPDMYDPAFRDALMNLKKGEISAPVHSSFGWHLIQLIDTRQ 385

Query: 278 L-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +   + A K          K  +    ++++ R+ A +  
Sbjct: 386 VDKTDAAQKERAYRMLFNRKFAEEAQTWMQEQRAEAYVKI 425


>gi|146278793|ref|YP_001168952.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145557034|gb|ABP71647.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 284

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/281 (11%), Positives = 78/281 (27%), Gaps = 50/281 (17%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKIN---GELEKIAVQELIVETLKKQEIEKSG 94
            +  +  T+NG+ IT G +    A L  Q  +     L K  +++LI +    Q +E + 
Sbjct: 31  TADTVVATVNGQEITLGHMIALRAGLPDQYQSLPDEALFKGILEQLIQQAALSQSVEGTV 90

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
              D  ++                                        +    ++     
Sbjct: 91  TKRDQLSLQNE---------------------------------ERGFLSAVAMRRVVEG 117

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
              +  ++   + +        EY    +L              ++     +        
Sbjct: 118 AVTDEALQAAYDARFADAAEQTEYNASHIL-----------VETEEEATKLKAEIEGGAD 166

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAIC 273
             +   + +S     + G   +     +   F++ +          P  TQ G   + + 
Sbjct: 167 FADMAREHSSDGAAANGGSLGWFGLGMMVKPFEDAVVGMKPGAVAGPIETQFGWHLVKLN 226

Query: 274 DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           + R    E      +  +      ++  A ++ ++ + A I
Sbjct: 227 ETR--IAEKPTLDEMRDELAGQIEQEAIARHIDEVTAKATI 265


>gi|300715281|ref|YP_003740084.1| hypothetical protein EbC_06930 [Erwinia billingiae Eb661]
 gi|299061117|emb|CAX58224.1| uncharacterized protein [Erwinia billingiae Eb661]
          Length = 431

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/303 (10%), Positives = 107/303 (35%), Gaps = 16/303 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   +    ++ +  +  ++   +N  V+ + D+   +  +K Q             L
Sbjct: 7   LILGAALTASTAFAAPQVVDKVAAVVNNGVVLESDVDGMMQSVKSQAQQAGQQLPDDKTL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               V+ L+++ +  Q  ++SGI      ++      A    ++ +   S L   G+   
Sbjct: 67  RHQIVERLVMDNILLQMAKQSGIQVTDAQLDGAIQNIAAQNKMTPDQLRSRLAYDGMNYG 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            +++ +  +    +V  N+   +   L  E+ +  +++ +       +      +P  + 
Sbjct: 127 TYREQIRREMTISEVRNNEVRRRVTILPQEVDSLSKQVASQNNASTELNLSHILLPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
             Q  V  +   A++   +     +       +++    +  G   +    +L   F   
Sbjct: 187 PTQQQVDDQETLAKQLVSQSKSGADFGKLAITYSADPQALKGGNMGWGKIQELPSLFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            +   + +   P  +  G   + + D R    ++        ++  + +P   ++   + 
Sbjct: 247 LVTAKKGDIIGPIRSGVGFHILKVNDVRGESQNVSVTEVHARHILLKPSPVMTDEQARQK 306

Query: 305 VKK 307
           +++
Sbjct: 307 LEQ 309



 Score = 83.2 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 82/289 (28%), Gaps = 25/289 (8%)

Query: 47  NGEV-----ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           N EV     I   ++      +  Q             L    L   E        D  T
Sbjct: 143 NNEVRRRVTILPQEVDSLSKQVASQNNASTELN-----LSHILLPLPENPTQQQVDDQET 197

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK------ 155
           +    V  +++     +   ++             +  IQ +     +     K      
Sbjct: 198 LAKQLVSQSKSGADFGKLAITYSADPQALKGGNMGWGKIQELPSLFAQALVTAKKGDIIG 257

Query: 156 -----YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
                 G   +++   + + +N++V E   R +L          Q   QK  +   +   
Sbjct: 258 PIRSGVGFHILKVNDVRGESQNVSVTEVHARHILLKPSPVMTDEQA-RQKLEQVVADINS 316

Query: 211 RLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVE 268
                  + ++ +         G   +       P F++  +K  +   + P  +  G  
Sbjct: 317 GKTTFAEEAKQLSQDPGSANQGGDLGWSSPEMYDPAFRDALMKLKKGQLSAPVHSSFGWH 376

Query: 269 YIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            I + D R +   + A K          K  +    ++++ R+ A +  
Sbjct: 377 LIQLLDTRQVDKTDAAQKERAYRLLFNRKFAEEAQTWMQEQRAAAYVKI 425


>gi|206890347|ref|YP_002248393.1| PpiC-type peptidyl-prolyl cis-trans isomerase, putative
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742285|gb|ACI21342.1| PpiC-type peptidyl-prolyl cis-trans isomerase, putative
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 341

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 52/328 (15%), Positives = 115/328 (35%), Gaps = 14/328 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           +  K       F+  L   F      I  + + ++     ++   +N +VIT  ++ K +
Sbjct: 14  INQKYLNCSIKFVFFLMIVFFCTQLLIFKLNAEENKFFVDKVIAVVNRDVITWSELYKYM 73

Query: 61  AL-----LKLQKINGELE------KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
                  +K    + + +      +  ++ LI   L+ +E EK GI    + +       
Sbjct: 74  EFTAKDEIKALNPDEKFKYFKAHEEEFLERLIDTKLQIEEAEKYGIFVTDSEIEGAINDI 133

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
            +   L+ + F   L K+G+  N +K+ L  Q I    +      K    + EI      
Sbjct: 134 KKKYALTEQAFLETLKKEGMSINDYKKMLKEQIIIGRALNTLVKSKIIITDAEINNYIAA 193

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
              ++  +             K +NQ  ++ +I +  +  ++         + +  +   
Sbjct: 194 HPELSCDDEGYYVSQI--FLKKRENQEELKAKINEVFKRLIQGEPFSKVASQMSEDVTAK 251

Query: 230 SIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
           + G    L + ++  +  N   K +    + P +T+ G+    +       G   L  Y+
Sbjct: 252 TGGAIGLLKKKEIASELSNLFSKMNIGQVSEPMMTEHGIFIFRLDGVCFKKGSEQLVNYV 311

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            +     K +K    + + LR  A I  
Sbjct: 312 RSLLEDEKFKKDYKLWTRGLRQRAYIEI 339


>gi|120554754|ref|YP_959105.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinobacter
           aquaeolei VT8]
 gi|120324603|gb|ABM18918.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinobacter
           aquaeolei VT8]
          Length = 617

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/395 (9%), Positives = 103/395 (26%), Gaps = 86/395 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +    I  +    ++I   I  + +            T+NG+ IT+ +  + +
Sbjct: 1   MLQDIRDNAQSTIAKVIVGLLIISLSIWGMDAIIGGFTGEPEVATVNGQDITEREFLRTV 60

Query: 61  ALLKLQK------------INGELEKIAVQELIVETLKKQEIEKSG---ITFDSNTVNYF 105
            +   Q+               ++ +  +  LI E +  Q+ +  G      D +++   
Sbjct: 61  QMESQQRLMQMENRDQSLLDEDQIRRDVLDALIREAVLTQDAQSQGLELTDADIDSLITQ 120

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-------------- 151
             Q   +   + + F + +   G+G   F++ +    +   +                  
Sbjct: 121 MPQFQVDGQFNRDRFVATVRNVGMGVAEFRESIRKNYVVNQIRAAIAQTGVVAPENAAHL 180

Query: 152 -------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                                 +    E ++ A   +  N   +   +     ++    L
Sbjct: 181 LAIQNQTRDFRVLTLDGSSVQDQVDVTEADVQAYYDENLNQFRQPEQVDAAYITLSQGAL 240

Query: 193 QNQGFVQKRIKD----------------------------------AEESRLRLPKDCNK 218
                V +                                       ++   +       
Sbjct: 241 AESIEVAEDELRTYYEERAEEYAREERRAAHILVEAGDEGQATLATIQQRLEKGESFAVL 300

Query: 219 LEKFA-SKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR 276
            E+++   +     G   +         F++      +   + P  T  G+  I + + R
Sbjct: 301 AEEYSVDTVSAQEGGDLGFAGRGVYDEAFEDALFGLEEGEVSGPVETSFGLHLIKLEEVR 360

Query: 277 DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
               ++     L             +E   ++RS 
Sbjct: 361 --RSDVPAFDELREDLRLELARTKASERFAEVRSQ 393


>gi|323160075|gb|EFZ46037.1| chaperone surA [Escherichia coli E128010]
          Length = 428

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 107/311 (34%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  N
Sbjct: 67  RHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + I  +V  N+   +   L  E+ +  Q++ N       +      IP  + 
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                V +    A     +              ++    ++ G+  +    +L   F   
Sbjct: 187 PTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPEIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQI--AADIK 315



 Score = 82.8 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 92/287 (32%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q  N       +  L    +   E   S    ++ +  
Sbjct: 143 NNEVRRRITI--LPQEVESLAQQVGNQNDASTELN-LSHILIPLPENPTSDQVNEAESQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V  ARN     +   +    Q   +     +  IQ +     +              
Sbjct: 200 RAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPEIFAQALSTAKKGDIVGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   + + KNI+V E   R +L          Q  V K  + A + +   
Sbjct: 260 RSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARV-KLEQIAADIKSGK 318

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYI 270
                  ++F+         G   +       P F++   + ++   + P  +  G   I
Sbjct: 319 TTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLI 378

Query: 271 AICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R++   + A K          K  +  A ++++ R++A +  
Sbjct: 379 ELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKI 425


>gi|212636811|ref|YP_002313336.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           piezotolerans WP3]
 gi|212558295|gb|ACJ30749.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           piezotolerans WP3]
          Length = 434

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/317 (12%), Positives = 106/317 (33%), Gaps = 19/317 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-- 70
           +K        ++   +  V + +     R+   IN  +I + +++  +  +K    N   
Sbjct: 1   MKRCNRLIFALLTLAMSQVVHAAVEPLDRVTVQINEGIILESEVAGMVKTIKANAANAGQ 60

Query: 71  ------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                  L    ++ LI+  L+ Q  ++ G+      ++      A+   +S ED  + +
Sbjct: 61  KLPSDTALRTQVIERLILTRLQMQMADRIGLHIGDLQLDQTIANIAKEQNISVEDMRAQI 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           +  G     +++ L  +    ++ +     +      EI      +    +++   +   
Sbjct: 121 ESDGTSFAQYREQLREEVTLGEIQRIQVQRRIQVSPQEINNLVSLINEQGLKDVEFQIGH 180

Query: 185 FSIPDNKLQNQGFVQ---KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             I          ++   KR     +         +     +S    +  G   Y+  ++
Sbjct: 181 ILIDVPSDATSAQLEASSKRADVVLKRLKDGDDFRSIAIAASSGPKALEGGIWDYMNINE 240

Query: 242 LHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKI 297
           +   F + +     N+   P  +  G+  + I D R       E     ++  + +P   
Sbjct: 241 MPTLFAEVVNDAKVNDIIGPIKSGAGLHILKIMDARGLQTQEIEEVKSRHILLKPSPILS 300

Query: 298 EKHEA----EYVKKLRS 310
           E+        ++ ++RS
Sbjct: 301 EERAKGMMDRFLAQIRS 317



 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/294 (9%), Positives = 78/294 (26%), Gaps = 27/294 (9%)

Query: 49  EVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
           E +T G+I +     ++Q    E+  +    LI E   K    + G        +    Q
Sbjct: 136 EEVTLGEIQRIQVQRRIQVSPQEINNLV--SLINEQGLKDVEFQIGHILIDVPSDATSAQ 193

Query: 109 HARNTGLSAEDFSSFLD---------------------KQGIGDNHFKQYLAIQSIWPDV 147
              ++  +        D                          + +    L  + +    
Sbjct: 194 LEASSKRADVVLKRLKDGDDFRSIAIAASSGPKALEGGIWDYMNINEMPTLFAEVVNDAK 253

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           V +          + I          T     +++    +  + + ++   +  +     
Sbjct: 254 VNDIIGPIKSGAGLHILKIMDARGLQTQEIEEVKSRHILLKPSPILSEERAKGMMDRFLA 313

Query: 208 SRLRLPKDCNK-LEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQ 264
                         +++      V  G+  +   +   P F+  L    +   + P+ + 
Sbjct: 314 QIRSGEAKFEDIARQYSEDPGSAVKGGELGWADPNVWVPAFKQALNSLKKGEISEPFRST 373

Query: 265 KGVEYIAICDKRDLGGEIA-LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            G   + +  +R                    K  +    ++ ++R+ A I  +
Sbjct: 374 HGWHIVQLEGRRTTDATEQFNTNRAHQLIYRRKFNEELQNWLDEMRAEAFIDIF 427


>gi|161612428|ref|YP_001586393.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|161361792|gb|ABX65560.1| hypothetical protein SPAB_00117 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 428

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/311 (13%), Positives = 111/311 (35%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  +
Sbjct: 67  RHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANIAKQNNMTMDQMRSRLAYDGLNYS 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP--ANKQKMKNITVREYLIRTVLFSIPDN 190
            ++  +  + I  +V  N+   +   L  E+   A +   +N    E  +  +L ++P+N
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDASTELNLSHILIALPEN 186

Query: 191 KLQNQGFVQKRIKDAE-ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
               Q    +R  +   E              +++    +  G+  +    +L   F   
Sbjct: 187 PTSEQVNDAQRQAENIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R     +        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMNDQQARLK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEEI--AADIK 315



 Score = 83.2 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 89/287 (31%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q          +  L    +   E   S    D+    
Sbjct: 143 NNEVRRRITV--LPQEVDALAKQIGTQNDASTELN-LSHILIALPENPTSEQVNDAQRQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V+ ARN     +   ++   Q         +  IQ +     +              
Sbjct: 200 ENIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   + + ++I+V E   R +L         +Q    K  + A + +   
Sbjct: 260 RSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMN-DQQARLKLEEIAADIKSGK 318

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYI 270
                  ++++         G   +       P F++ L K      + P  +  G   I
Sbjct: 319 TTFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKLHKGQISAPVHSSFGWHLI 378

Query: 271 AICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R +   + A K          K  +  A ++++ R++A +  
Sbjct: 379 ELLDTRKVDKTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKI 425


>gi|188580734|ref|YP_001924179.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           populi BJ001]
 gi|179344232|gb|ACB79644.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           populi BJ001]
          Length = 300

 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/278 (11%), Positives = 73/278 (26%), Gaps = 42/278 (15%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS 99
             +   +NG+ IT  D++       L      +++ A Q L+V+ +              
Sbjct: 47  ETVVARVNGQAITAADLALAGEDPALSLPG--VDEGAKQNLLVDYMI------------- 91

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
                       +  + A+   +              Y   + +  D ++ +        
Sbjct: 92  ------------DLKVGAQAAEAAKVGDSPEFKRKLAYFRDKLLLDDYLEREAKKAVTPE 139

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
             +    +         E   R +L              +   K                
Sbjct: 140 AAKALYEQTVKSMKPEEEVHARHIL-----------VESEDEAKKIAARIKGGEDFAKIA 188

Query: 220 EKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRD 277
            + +         G   +  +  +   F +   K +    ++P  TQ G   + + +KR 
Sbjct: 189 AEVSKDPGSKTEGGDLGWFTQERMVKPFADAAFKMTPGQVSDPVKTQFGWHVLRVEEKRT 248

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                     +  Q       K + + + KLR  A + 
Sbjct: 249 KPV--PTFDEMKEQIDQYLTRKAQQDTIVKLREAAKVE 284


>gi|212711199|ref|ZP_03319327.1| hypothetical protein PROVALCAL_02271 [Providencia alcalifaciens DSM
           30120]
 gi|212686367|gb|EEB45895.1| hypothetical protein PROVALCAL_02271 [Providencia alcalifaciens DSM
           30120]
          Length = 451

 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/325 (11%), Positives = 102/325 (31%), Gaps = 18/325 (5%)

Query: 5   VFTSLSDFIKLLTTYFVLII-FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL 63
           +      +  ++  +  LI+        S  +     ++   +N  V+ + D+   I  +
Sbjct: 1   MRNKSQFYRTIMKNWRTLILGLMFASSASLAAPQQMDKVAAVVNNGVVLESDVQNMINTV 60

Query: 64  KLQKINGE--------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
           KL   N          L +  +  L+++ +  Q   +  I      VN      AR   L
Sbjct: 61  KLNARNANQQVPDDQTLRQQIIDRLVMDNIMLQMANQMQINIPEEAVNTTIADIARQNNL 120

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
           +       L   GI    ++  +  + +  +V  N+   +   L  E+ A   +M +   
Sbjct: 121 TLPQMEKRLTADGINIAKYRSEIRKEMLLAEVRNNEVRRRITILPQEVDALADQMDSQMN 180

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIG 232
            +  +      IP  +      + K     ++      +          +++    +  G
Sbjct: 181 AQKGVNLSHILIPLPENPTPEQLAKAESLVDKILSDLKKGSDFGKLAIAYSADPQALKGG 240

Query: 233 KAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDK-----RDLGGEIALKA 286
              +    +L   F +      + +   P  +  G   + + +      + +        
Sbjct: 241 NMGWSRLQELPVVFSDELKNAKKGDIVGPIRSGVGFHILRVNEVSGDTHQPISVTEVKAR 300

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSN 311
           ++  +++P   +    + + +L   
Sbjct: 301 HILLKSSPIMDDATARQKLTQLAQE 325



 Score = 76.6 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/168 (11%), Positives = 52/168 (30%), Gaps = 3/168 (1%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                G   + +               +    +       + +    QK  + A+E R  
Sbjct: 270 IRSGVGFHILRVNEVSGDTHQPISVTEVKARHILLKSSPIMDDATARQKLTQLAQEIRNG 329

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEY 269
                   ++ +      +  G+  + +     P F++  +K  +   + P  +  G   
Sbjct: 330 RISFEEAAKENSEDPGSALKGGELGWNMPDVYDPAFRDALMKLKKGEISQPVPSSFGWHL 389

Query: 270 IAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           I + D R +   + A K          K  +    ++++ R+ A ++ 
Sbjct: 390 IQLEDTRSVDKTDAAKKDQAYRLLFNRKFNEEAQTWMQEQRAAAYVNI 437


>gi|312882503|ref|ZP_07742244.1| peptidyl-prolyl cis-trans isomerase D [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369903|gb|EFP97414.1| peptidyl-prolyl cis-trans isomerase D [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 619

 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/403 (10%), Positives = 103/403 (25%), Gaps = 91/403 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++    S     +    +++ F    +  Y     SS     +  + I+ GD  +  
Sbjct: 1   MMERMREGASGVAVKVILGVIILSFVFTGVSGYIGSGASSS-AAKVGNDEISRGDFEREY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + Q                       K  +  +I + L ++  E  G+      V  
Sbjct: 60  QNQRNQMQAQLGDYFSNLLADQNYVNTFRKSVLDRMIDDKLIERHAESLGLRVSDAQVRQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN----------- 150
              +  +         + + + L + G   + F + L    +   +              
Sbjct: 120 QIFEFPQFQVEGKFDEDVYQATLRRAGFTAHTFSEDLRKNILREQLRNAIEGTDFSLAGE 179

Query: 151 ----------------------DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                 DF  K    + EI    Q+  +   R   ++     + 
Sbjct: 180 VESQSKLISQTRDVKKITLSLSDFAKKVKLSDEEINDYYQQHTSQYTRPEQMKVAYIELS 239

Query: 189 DNKLQNQGFV---------------------------------QKRIKDAEESRLRLPKD 215
             KL+N   V                                 +++ +   +        
Sbjct: 240 AEKLKNNIVVSDNDAKAYYQDNIDKYTSEEQRRVSHILIQGDNKEKAQKVLDKLNAGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               ++ +  +      G   ++    + P+F+      K    TT    ++ G   I +
Sbjct: 300 ATLAKEDSEDVGSAEEGGSLGWIERDVMDPEFEKAAFALKQPGETTGLVKSEFGYHIIKL 359

Query: 273 CDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            + +  +      ++  +  +    K          +L + A 
Sbjct: 360 DELKAPETESYETVEKAIKQELKDQKAADEFYALQAQLETQAY 402


>gi|260654336|ref|ZP_05859826.1| peptidyl-prolyl cis-trans isomerase family protein [Jonquetella
           anthropi E3_33 E1]
 gi|260630969|gb|EEX49163.1| peptidyl-prolyl cis-trans isomerase family protein [Jonquetella
           anthropi E3_33 E1]
          Length = 318

 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/317 (11%), Positives = 82/317 (25%), Gaps = 42/317 (13%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSS-RIRTTINGEVITDGDISKRIALLKLQKI--- 68
           ++    +   I       +++ + A +  +I   +    IT+ D++  IA    Q+    
Sbjct: 1   MRFNRVFLAAITVAATAGIAFAASADNDAKILAKVGPVTITERDMNMAIAAYPAQQRAYI 60

Query: 69  -NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
              +     + EL+          K     D+         H R    +     +     
Sbjct: 61  ETPQGRAALLDELVN-FNLLALSGKEQNLQDTQAFKDAMQLHERQVLANLAGEKAIA--- 116

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
                                           + EI       ++       IR     I
Sbjct: 117 -------------------------GSGDNISDAEIKQYYDAHQDSFFVPESIRASHILI 151

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLP----KDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
              K  +   V +    A +   ++     +     +  +S    V  G   +  +  + 
Sbjct: 152 SVPKGASDKEVAEAKDKAMDIIKKIKSGSLEFSKAAQDMSSCPSKVQGGDLGFFSKGQMV 211

Query: 244 PQFQNLLKK-SQNNT-TNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEK 299
           P F+            + P  T  G   I + D           +KA + +  +      
Sbjct: 212 PAFEKAAFALKPGEMTSEPVRTDFGFHIIKVTDAHPAKTMPLDDVKASIKSTLSSQAKLA 271

Query: 300 HEAEYVKKLRSNAIIHY 316
              + + +LR    +  
Sbjct: 272 AFQKAIAELRQKYPVEI 288


>gi|262378424|ref|ZP_06071581.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens
           SH164]
 gi|262299709|gb|EEY87621.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens
           SH164]
          Length = 441

 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/314 (11%), Positives = 100/314 (31%), Gaps = 17/314 (5%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAM-SSRIRTTINGEVITDGDISKRIALLKLQK----- 67
           K    +F      +V   S +S+A     +   ++  VI   D+ + +A LK Q      
Sbjct: 9   KYFKQFFKATALALVISSSMQSFAQPVDEVVAIVDNGVILKSDLIQGVAELKHQLETQKR 68

Query: 68  ---INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS--AEDFSS 122
                  LEK A+ +LI+   + +++ +  +  D  ++N   ++ A  +G          
Sbjct: 69  EVPPQAFLEKQALDQLILRQAQLEQVRRYNVKPDEKSLNEAVMKVASQSGTKTLEAFQQK 128

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
                       +  +A       + +   M +    + ++    +  +        +  
Sbjct: 129 LDAMAPGTYESLRNRIAEDLAINRLRQQQVMSRIKISDQDVENFLKSPQGQAALGSQVHV 188

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
           +   I     Q    V+   +  + +           ++++     V      +   +D+
Sbjct: 189 IHARITPKDKQT-ANVESVAQQVKNALNTSNDIQAISKQYSDTKVQVEGVDMGFRSLADI 247

Query: 243 HPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIAL----KAYLSAQNTPTKI 297
             +    +       TT     + GV  + + +++    +  +      ++  Q +    
Sbjct: 248 PAELAARVSALPVGQTTELIPARDGVHVLKVLERKTSEQKALVPQYQTRHILIQPSEVVS 307

Query: 298 EKHEAEYVKKLRSN 311
            ++    +  + + 
Sbjct: 308 PENAKHMIDNIYNR 321



 Score = 89.3 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/270 (11%), Positives = 81/270 (30%), Gaps = 3/270 (1%)

Query: 50  VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
            I+D D+   +   + Q   G    +    +  +  +   +E       +       +Q 
Sbjct: 163 KISDQDVENFLKSPQGQAALGSQVHVIHARITPKDKQTANVESVAQQVKNALNTSNDIQA 222

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
                   +     +D            LA +     V +   ++   +    +   ++K
Sbjct: 223 ISKQYSDTKVQVEGVDMGFRSLADIPAELAARVSALPVGQTTELIPARDGVHVLKVLERK 282

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HD 228
                      +T    I  +++ +    +  I +                 F++     
Sbjct: 283 TSEQKALVPQYQTRHILIQPSEVVSPENAKHMIDNIYNRLKAGEDFTVLASTFSTDTGSA 342

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY 287
              G   ++    + P+F+  +K +     + P+ TQ G   + + D R        +  
Sbjct: 343 RDGGSLGWVSPGVMVPEFEEKMKSTPVGQVSAPFQTQFGWHILQVTDTRQQDMTEEYQER 402

Query: 288 L-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +        + E     ++++LR+NA +  
Sbjct: 403 MARQILGERQFETELDSWLRELRANAYVEI 432


>gi|16759087|ref|NP_454704.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|16763482|ref|NP_459097.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|29140637|ref|NP_803979.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56412363|ref|YP_149438.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|167550725|ref|ZP_02344482.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|167989955|ref|ZP_02571055.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168230361|ref|ZP_02655419.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168234847|ref|ZP_02659905.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168243501|ref|ZP_02668433.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168464364|ref|ZP_02698267.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168820926|ref|ZP_02832926.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194444526|ref|YP_002039322.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194451624|ref|YP_002044060.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194469029|ref|ZP_03075013.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194736155|ref|YP_002113109.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197248833|ref|YP_002145076.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197263512|ref|ZP_03163586.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197361300|ref|YP_002140935.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198244102|ref|YP_002214044.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200386716|ref|ZP_03213328.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204926901|ref|ZP_03218103.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205351432|ref|YP_002225233.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207855605|ref|YP_002242256.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|213427535|ref|ZP_03360285.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213648902|ref|ZP_03378955.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|224581934|ref|YP_002635732.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238911150|ref|ZP_04654987.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|289826182|ref|ZP_06545294.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|81677737|sp|Q5PDE6|SURA_SALPA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|81706931|sp|Q7CR87|SURA_SALTY RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|81766233|sp|Q8XEV3|SURA_SALTI RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|25513082|pir||AH0513 survival protein SurA precursor [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16418589|gb|AAL19056.1| peptidyl-prolyl cis-trans isomerase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16501377|emb|CAD01248.1| survival protein SurA precursor [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29136261|gb|AAO67828.1| survival protein SurA precursor [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56126620|gb|AAV76126.1| survival protein SurA precursor [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|194403189|gb|ACF63411.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194409928|gb|ACF70147.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194455393|gb|EDX44232.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194711657|gb|ACF90878.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195632865|gb|EDX51319.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197092775|emb|CAR58200.1| survival protein SurA precursor [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197212536|gb|ACH49933.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197241767|gb|EDY24387.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197291654|gb|EDY31004.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197938618|gb|ACH75951.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199603814|gb|EDZ02359.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204323566|gb|EDZ08761.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205271213|emb|CAR36001.1| survival protein SurA precursor [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205324462|gb|EDZ12301.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205331363|gb|EDZ18127.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205335129|gb|EDZ21893.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205337413|gb|EDZ24177.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205342524|gb|EDZ29288.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|206707408|emb|CAR31681.1| survival protein SurA precursor [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224466461|gb|ACN44291.1| survival protein SurA precursor [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|267991763|gb|ACY86648.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301156721|emb|CBW16195.1| survival protein SurA precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312911062|dbj|BAJ35036.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320084330|emb|CBY94123.1| survival protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321222338|gb|EFX47410.1| Survival protein SurA precursor Peptidyl-prolyl cis-trans isomerase
           SurA [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322615913|gb|EFY12830.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322620698|gb|EFY17558.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322623951|gb|EFY20788.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322627399|gb|EFY24190.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322630706|gb|EFY27470.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322638074|gb|EFY34775.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322640560|gb|EFY37211.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322647700|gb|EFY44185.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648050|gb|EFY44517.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322656918|gb|EFY53204.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657371|gb|EFY53643.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663691|gb|EFY59891.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322666524|gb|EFY62702.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672317|gb|EFY68429.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322676371|gb|EFY72442.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322679536|gb|EFY75581.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322686135|gb|EFY82119.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323128410|gb|ADX15840.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323194979|gb|EFZ80165.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323200112|gb|EFZ85199.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323201067|gb|EFZ86136.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323209464|gb|EFZ94397.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323212284|gb|EFZ97108.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323216589|gb|EGA01315.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222472|gb|EGA06842.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323225783|gb|EGA10003.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323228676|gb|EGA12805.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323236710|gb|EGA20786.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323239789|gb|EGA23836.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323242163|gb|EGA26192.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323249412|gb|EGA33328.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323252253|gb|EGA36104.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323256656|gb|EGA40386.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323261310|gb|EGA44897.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323265510|gb|EGA49006.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323271702|gb|EGA55120.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326621788|gb|EGE28133.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326626455|gb|EGE32798.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332987044|gb|AEF06027.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 428

 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/311 (12%), Positives = 105/311 (33%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  +
Sbjct: 67  RHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANIAKQNNMTMDQMRSRLAYDGLNYS 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + I  +V  N+   +   L  E+ A  +++         +      I   + 
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDASTELNLSHILIALPEN 186

Query: 193 QNQGFVQKRIKDAE---ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                V    + AE   E              +++    +  G+  +    +L   F   
Sbjct: 187 PTSEQVNDAQRQAESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R     +        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMNDQQARLK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEEI--AADIK 315



 Score = 83.6 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 89/287 (31%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q          +  L    +   E   S    D+    
Sbjct: 143 NNEVRRRITV--LPQEVDALAKQIGTQNDASTELN-LSHILIALPENPTSEQVNDAQRQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V+ ARN     +   ++   Q         +  IQ +     +              
Sbjct: 200 ESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   + + ++I+V E   R +L         +Q    K  + A + +   
Sbjct: 260 RSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMN-DQQARLKLEEIAADIKSGK 318

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYI 270
                  ++++         G   +       P F++ L K      + P  +  G   I
Sbjct: 319 TTFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKLHKGQISAPVHSSFGWHLI 378

Query: 271 AICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R +   + A K          K  +  A ++++ R++A +  
Sbjct: 379 ELLDTRKVDKTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKI 425


>gi|90409117|ref|ZP_01217239.1| diadenosinetetraphosphatase [Psychromonas sp. CNPT3]
 gi|90309791|gb|EAS37954.1| diadenosinetetraphosphatase [Psychromonas sp. CNPT3]
          Length = 413

 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 100/291 (34%), Gaps = 15/291 (5%)

Query: 35  SWAMSSRIRTTINGEVITDGDISK-----RIALLKLQK---INGELEKIAVQELIVETLK 86
           S     +I   +N EVI   D+ +     R   LK+Q+      +L +  + +LI ++L+
Sbjct: 1   STEHLDQIEAIVNQEVILSSDVKRMEKDIRARYLKMQQALPSKQKLRQQILDKLINDSLQ 60

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
            Q  E+ G+  D+  V+    Q  +  G +   +   L ++G     F   +  +    +
Sbjct: 61  LQVAERMGLRLDNAQVDQTIQQILKKEGKNIAQYQQELSRKGQSYQAFSDSVRNELTINE 120

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           + +     +    E EI    Q++     +      +   +  +        Q+  K   
Sbjct: 121 IRQMQVRQRLNISEQEINLMVQRLNKDGKKNTQFHFIHILLKTDPNAPLHAQQQAKKIM- 179

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK---SQNNTTNPYVT 263
           +   +     +   +++     +  G   +    ++   F +   +    + +   P+ T
Sbjct: 180 QRLAQGESASSLARQYSQGPKALDGGDWGWRTVDEIPSLFADKFDELKTKKGDILGPFKT 239

Query: 264 QKGVEYIAICDKRDLGGEIALKAYLSAQNTP---TKIEKHEAEYVKKLRSN 311
           + G+  I + DK+ +     L+               +K     +   R  
Sbjct: 240 RLGLSIIQVSDKKGIKNTTTLEVNARHILIKSNIILSDKKAKLLLNTYRQE 290



 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 46/157 (29%), Gaps = 3/157 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           I  + +K    T    +    +    +  L ++          +E               
Sbjct: 246 IQVSDKKGIKNTTTLEVNARHILIKSNIILSDKKAKLLLNTYRQEILEGKANFAELARAH 305

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL-G 279
           +      V  G   +   +   P+F++  +       + P+ T  G   + + +KR    
Sbjct: 306 SQDPGSAVKGGNLGWADPNMYVPEFRDRAQSLRIGEISKPFHTMHGWHILEVLEKRQADT 365

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            E A K    +     +       ++ ++R  A I  
Sbjct: 366 TEKASKQKAYSILYKQRFPAEVYAWMNEIRQEAYIKI 402


>gi|13472995|ref|NP_104562.1| cell binding factor 2 precursor [Mesorhizobium loti MAFF303099]
 gi|14023743|dbj|BAB50348.1| mll3467 [Mesorhizobium loti MAFF303099]
          Length = 303

 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/316 (13%), Positives = 90/316 (28%), Gaps = 60/316 (18%)

Query: 18  TYFVLIIFCIVPIVSYKSWAMS-----------SRIRTTINGEVITDGDI---SKRIALL 63
             F L   C+ P+++ ++   +           + +  T+NG+ +T+ D+      ++  
Sbjct: 15  LAFGLSALCLSPVMAQEAAPAAPAAPAAAPVDPNAVVATVNGQPLTEADLVLAEGELSQQ 74

Query: 64  KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
             Q    +    A+   I   +   +    G+  D +                       
Sbjct: 75  FAQLPPEQRRAAALSAAIEIRVMAAKAVTDGLDKDPDFQRR------------------- 115

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                        +L  +++  ++V+   + K  + E+    +++      V E   R +
Sbjct: 116 -----------MAFLQQRALHGEMVEKGVVNKVTDAEIRARYDQEIANTPPVNEVHARHI 164

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV-SIGKAQYLLESDL 242
           L    +                 +             +  S      + G   +     +
Sbjct: 165 LVKTKEEAEA-----------IIKQLDGGGDFQKLANEHTSDPSGKSNGGDLGWFGPGQM 213

Query: 243 HPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH 300
            P+F +          T  P  TQ G   I + DKR           +  Q     I   
Sbjct: 214 VPEFDKAAFALEVGKYTEQPVQTQFGWHVIKLEDKRAKQP--PAFDDVKDQAKQAVIRDK 271

Query: 301 EAEYVKKLRSNAIIHY 316
               VK LR+ A +  
Sbjct: 272 YFALVKSLRAGAKVEI 287


>gi|253998626|ref|YP_003050689.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
           SIP3-4]
 gi|313200700|ref|YP_004039358.1| ppic-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
           MP688]
 gi|253985305|gb|ACT50162.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
           SIP3-4]
 gi|312440016|gb|ADQ84122.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
           MP688]
          Length = 267

 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 92/307 (29%), Gaps = 52/307 (16%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDG--DISKRIALLKLQKING 70
           +K+     + I+   +  ++  +         T+NG+ I     D   + A  + Q ++ 
Sbjct: 1   MKITLRALLAIVAIGISSLAMAA----DPAVATVNGKPIKQSLFDYITKDAAARGQNVDD 56

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
            +  + V  LI   L  QE ++SG       V                            
Sbjct: 57  NVRTVIVNRLISSELIYQEAQRSGFDKRPEYVAKQ------------------------- 91

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                +  A + +    +++       +        ++  + +  +EY  R +L      
Sbjct: 92  -----ELAARELLVNSYLEDYLKKNPVSDAAVKAEYEKYKQEVGDKEYNARHIL------ 140

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV-SIGKAQYLLESDLHPQF-QN 248
                   +   KD      +        ++ +       + G   +     +   F + 
Sbjct: 141 -----VATEAEAKDIIAQLGKGADFAKLAKEKSKDPGGKENGGDLGWFAPGSMVKPFSEA 195

Query: 249 LLKKSQNNTT-NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
           + K  + + T +P  TQ G   I + D RD          +         ++   + +  
Sbjct: 196 VTKMKKGSYTADPVQTQFGWHVIKLEDVRDAQP--MPFEKVQDALKKQLQQRQLEKLLSD 253

Query: 308 LRSNAII 314
           LRS A I
Sbjct: 254 LRSKAKI 260


>gi|229521840|ref|ZP_04411257.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae TM
           11079-80]
 gi|229340765|gb|EEO05770.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae TM
           11079-80]
          Length = 619

 Score =  103 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/403 (7%), Positives = 91/403 (22%), Gaps = 91/403 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + +Y   +  +     +    I+ GD  +  
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYL-ISGGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                       K  +  ++ + L +Q     G+      V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119

Query: 105 ---FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                 Q        +  + + L + G     + +YL    +   ++             
Sbjct: 120 LILEIPQFQSQGVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLSGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL---- 184
                                 DF  K    + EI    +       R   ++       
Sbjct: 180 VNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIEQYYKTNTERFTRPEQVKVSYVELS 239

Query: 185 ---------------FSIPDNKLQNQGFVQKRIKDAE--------------ESRLRLPKD 215
                                 L      ++R                   +        
Sbjct: 240 ADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               ++ +  +      G   ++    + P F+        +   +    +  G   I +
Sbjct: 300 ATLAKEKSQDLGSAAEGGSLGWIEPDTMDPAFEAAAFALTEKGQVSGLVKSDFGYHIIRL 359

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            D +   +     ++  +  +    +          +L   A 
Sbjct: 360 DDIKTPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAF 402


>gi|255320532|ref|ZP_05361713.1| chaperone SurA [Acinetobacter radioresistens SK82]
 gi|255302504|gb|EET81740.1| chaperone SurA [Acinetobacter radioresistens SK82]
          Length = 436

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/314 (11%), Positives = 100/314 (31%), Gaps = 17/314 (5%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAM-SSRIRTTINGEVITDGDISKRIALLKLQK----- 67
           K    +F      +V   S +S+A     +   ++  VI   D+ + +A LK Q      
Sbjct: 4   KYFKQFFKATALALVISSSMQSFAQPVDEVVAIVDNGVILKSDLIQGVAELKHQLETQKR 63

Query: 68  ---INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS--AEDFSS 122
                  LEK A+ +LI+   + +++ +  +  D  ++N   ++ A  +G          
Sbjct: 64  EVPPQAFLEKQALDQLILRQAQLEQVRRYNVKPDEKSLNEAVMKVASQSGTKTLEAFQQK 123

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
                       +  +A       + +   M +    + ++    +  +        +  
Sbjct: 124 LDAMAPGTYESLRNRIAEDLAINRLRQQQVMSRIKISDQDVENFLKSPQGQAALGSQVHV 183

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
           +   I     Q    V+   +  + +           ++++     V      +   +D+
Sbjct: 184 IHARITPKDKQT-ANVESVAQQVKNALNTSNDIQAISKQYSDTKVQVEGVDMGFRSLADI 242

Query: 243 HPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIAL----KAYLSAQNTPTKI 297
             +    +       TT     + GV  + + +++    +  +      ++  Q +    
Sbjct: 243 PAELAARVSALPVGQTTELIPARDGVHVLKVLERKTSEQKALVPQYQTRHILIQPSEVVS 302

Query: 298 EKHEAEYVKKLRSN 311
            ++    +  + + 
Sbjct: 303 PENAKHMIDNIYNR 316



 Score = 89.0 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 31/270 (11%), Positives = 81/270 (30%), Gaps = 3/270 (1%)

Query: 50  VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
            I+D D+   +   + Q   G    +    +  +  +   +E       +       +Q 
Sbjct: 158 KISDQDVENFLKSPQGQAALGSQVHVIHARITPKDKQTANVESVAQQVKNALNTSNDIQA 217

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
                   +     +D            LA +     V +   ++   +    +   ++K
Sbjct: 218 ISKQYSDTKVQVEGVDMGFRSLADIPAELAARVSALPVGQTTELIPARDGVHVLKVLERK 277

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HD 228
                      +T    I  +++ +    +  I +                 F++     
Sbjct: 278 TSEQKALVPQYQTRHILIQPSEVVSPENAKHMIDNIYNRLKAGEDFTVLASTFSTDTGSA 337

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY 287
              G   ++    + P+F+  +K +     + P+ TQ G   + + D R        +  
Sbjct: 338 RDGGSLGWVSPGVMVPEFEEKMKSTPVGQVSAPFQTQFGWHILQVTDTRQQDMTEEYQER 397

Query: 288 L-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +        + E     ++++LR+NA +  
Sbjct: 398 MARQILGERQFETELDSWLRELRANAYVEI 427


>gi|258542094|ref|YP_003187527.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633172|dbj|BAH99147.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636229|dbj|BAI02198.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639284|dbj|BAI05246.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642338|dbj|BAI08293.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-22]
 gi|256645393|dbj|BAI11341.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-26]
 gi|256648448|dbj|BAI14389.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-32]
 gi|256651501|dbj|BAI17435.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654492|dbj|BAI20419.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
           3283-12]
          Length = 454

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 85/267 (31%), Gaps = 11/267 (4%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI-------NGELEKIAVQELIVETLK 86
                   I   IN   +T  D+  R  L  L             L    +++LI E L+
Sbjct: 46  AQPEPDDMILAVINSIPLTKRDVDNRGKLFALSTGLPLTPDLMARLRPQIIRQLIDERLR 105

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
            QEI    I      +        R  G+        L + G+        + +Q  W  
Sbjct: 106 TQEILSRHINVPPEQIAGAITNIERRNGMPEGTLREHLAQDGVSLTTLIDQIRVQIGWIQ 165

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           V++ +   +      +I   +  +K    R       +F   ++   +Q  +       +
Sbjct: 166 VLRQELGARSRVSAQDIAQRQAALKREEGRTEYELAEIFVKVEDPRHDQEELDFTNTVIQ 225

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ---NNTTNPYVT 263
           E R +         +F+     +  G   ++ E +L P    ++++        +NP   
Sbjct: 226 ELR-KGAPFPIVAAQFSQSQTALDGGSMGWVQEDELDPAVVQVVRQMPVGVGAISNPIKV 284

Query: 264 QKGVEYIAICDKRDLGGEIALKAYLSA 290
             G   I +  KR +G E+     +  
Sbjct: 285 PGGYVIITLNGKRVIGHEMGHLITIRQ 311



 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 52/145 (35%), Gaps = 2/145 (1%)

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR-LRLPKDCNKLEKFASKIHDVS 230
           +       IR V  S            Q+     +  + ++    C ++E       +  
Sbjct: 301 HEMGHLITIRQVFLSFDTPLDPQHITPQQESTLQKAMQVIQNTHSCTEMEALNKAEGEKR 360

Query: 231 IGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS 289
                 +    L+PQ Q+L     +   + P V++ G++ + +C K++        + ++
Sbjct: 361 PTDPGEMPLERLNPQMQSLLADLPEGKVSRPLVSRDGIDLLMVCTKKEKNFSNRSPSEIA 420

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAII 314
            Q    ++E+   +    L   AII
Sbjct: 421 DQLMNERVEQAARQLDSDLHRRAII 445


>gi|254487361|ref|ZP_05100566.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Roseobacter sp.
           GAI101]
 gi|214044230|gb|EEB84868.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Roseobacter sp.
           GAI101]
          Length = 411

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 108/290 (37%), Gaps = 11/290 (3%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M     T ++  +  LT    LI   ++      +  + +     +N  V+T+ ++ +R 
Sbjct: 1   MWE--VTKMN--LNRLTRSIGLIGLALMTATPLAAQNLFAP-VARVNESVVTEFEVQQRQ 55

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             L+L    G     A+  LI E L+ + + ++GI      +     + A    LS  +F
Sbjct: 56  RFLQLLNAPGATRDGALTSLIDERLRNEAVAEAGIALTPEGIEDSLTEFAARANLSTAEF 115

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
           +S L++ G+    F+ ++     W ++++  +  +    + EI       +   VR  L 
Sbjct: 116 TSALERSGVAKETFRDFVVNSVGWRELIRARYNARVQITDAEINRALGATRGGGVRVLLS 175

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
             ++ + P +  +     ++             +      ++++       G+ ++   S
Sbjct: 176 EIIIPAPPKDAARVNALAEQ-----IAQSRSAAEFSGFASRYSATASRGRGGRLEWQDLS 230

Query: 241 DLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS 289
            L P  Q L+   +    T P      V    + D ++ G    + + + 
Sbjct: 231 SLPPSLQPLILGLAPGEVTAPLPIPNAVALFQLRDIQETGAATPVYSAIE 280



 Score = 40.8 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 8/79 (10%), Positives = 30/79 (37%), Gaps = 3/79 (3%)

Query: 239 ESDLHPQFQNL-LKKSQNNTTNPYVTQKG--VEYIAICDKRDLGGEIALKAYLSAQNTPT 295
            +++         K      +       G  + ++ +CD+     +   +  ++      
Sbjct: 330 PAEIPQDIAIELSKLDPGEVSTALTRANGQTLMFLMMCDRTSASNQDTSRTDVANALRQE 389

Query: 296 KIEKHEAEYVKKLRSNAII 314
           ++  +  + +++LR++A I
Sbjct: 390 RLSGYADQLLEQLRADARI 408


>gi|157159524|ref|YP_001456842.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli HS]
 gi|157065204|gb|ABV04459.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli HS]
          Length = 428

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 107/311 (34%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------L 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  N
Sbjct: 67  RHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + I  +V  N+   +   L  E+ +  Q++ N       +      IP  + 
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                V +    A     +              ++    ++ G+  +    +L   F   
Sbjct: 187 PTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQI--AADIK 315



 Score = 83.6 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 92/287 (32%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q  N       +  L    +   E   S    ++ +  
Sbjct: 143 NNEVRRRITI--LPQEVESLAQQVGNQNDASTELN-LSHILIPLPENPTSDQVNEAESQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V  ARN     +   +    Q   +     +  IQ +     +              
Sbjct: 200 RAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   + + KNI+V E   R +L          Q  V K  + A + +   
Sbjct: 260 RSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARV-KLEQIAADIKSGK 318

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYI 270
                  ++F+         G   +       P F++   + ++   + P  +  G   I
Sbjct: 319 TTFAAAAKEFSQDPGSANQGGDLGWATPDVFDPAFRDALTRLNKGQMSAPVHSSFGWHLI 378

Query: 271 AICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R++   + A K          K  +  A ++++ R++A +  
Sbjct: 379 ELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKI 425


>gi|329114153|ref|ZP_08242915.1| Chaperone SurA [Acetobacter pomorum DM001]
 gi|326696229|gb|EGE47908.1| Chaperone SurA [Acetobacter pomorum DM001]
          Length = 454

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 85/267 (31%), Gaps = 11/267 (4%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI-------NGELEKIAVQELIVETLK 86
                   I   IN   +T  D+  R  L  L             L    +++LI E L+
Sbjct: 46  AQPEPDDMILAVINSIPLTKRDVDNRGKLFALSTGLPLTPDLMARLRPQIIRQLIDERLR 105

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
            QEI    I      +        R  G+        L + G+        + +Q  W  
Sbjct: 106 TQEILSRHINVPPEQIAGAITNIERRNGMPEGTLREHLAQDGVSLTTLIDQIRVQIGWIQ 165

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           V++ +   +      +I   +  +K    R       +F   ++   +Q  +       +
Sbjct: 166 VLRQELGARSRVSAQDIAQRQAALKREEGRTEYELAEIFVKVEDPRHDQEELDFTNTVIQ 225

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ---NNTTNPYVT 263
           E R +         +F+     +  G   ++ E +L P    ++++        +NP   
Sbjct: 226 ELR-KGAPFPIVAAQFSQSQTALDGGSMGWVQEDELDPAVVQVVRQMPVGVGAISNPIKV 284

Query: 264 QKGVEYIAICDKRDLGGEIALKAYLSA 290
             G   I +  KR +G E+     +  
Sbjct: 285 PGGYVIITLNGKRVIGHEMGHLITIRQ 311



 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 52/145 (35%), Gaps = 2/145 (1%)

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR-LRLPKDCNKLEKFASKIHDVS 230
           +       IR V  S            Q+     +  + ++    C ++E       +  
Sbjct: 301 HEMGHLITIRQVFLSFDTPLDPQHITPQQESTLQKAMQVIQNTHSCTEMEALNKAEGEKR 360

Query: 231 IGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS 289
                 +    L+PQ Q+L     +   + P V++ G++ + +C K++        + ++
Sbjct: 361 PTDPGEMPLERLNPQMQSLLADLPEGKVSRPLVSRDGIDLLMVCTKKEKNFSNRSPSEIA 420

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAII 314
            Q    ++E+   +    L   AII
Sbjct: 421 DQLMNERVEQAARQLDSDLHRRAII 445


>gi|303327130|ref|ZP_07357572.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio
           sp. 3_1_syn3]
 gi|302863118|gb|EFL86050.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio
           sp. 3_1_syn3]
          Length = 312

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/318 (14%), Positives = 105/318 (33%), Gaps = 25/318 (7%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI--ALLKLQKINGELE 73
           +   F+L++      V     A  +++   +NG+VIT  D+ K     L + +       
Sbjct: 1   MKKTFILLLAIWFCGVCGVQAAQLNKVAAVVNGQVITMFDLQKTALPELGRARLNPNNPA 60

Query: 74  KI---------AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
           +           +  +I++ L  QE ++  I+   + V+   V+  +   L+ + F + L
Sbjct: 61  QAKEVEKVFRKVLDMMIMDILLGQEAKRLKISVSPSEVDNELVKMMKARNLTKQQFEAQL 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            +Q I  +  +Q      +   ++  +   K      EI A  +  K+       +   +
Sbjct: 121 AQQKISIDEIRQNFEKSLLRQKIMGMEVGRKVVVTPAEIKAYYEAHKDNLYDRSGLHMGV 180

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
                N        Q +                   K++   +    G    +    L+P
Sbjct: 181 LVYAPNVNAKSIAAQIKSGK--------LSFEEAAAKYSIAPNKDKGGDMGPVEWDRLNP 232

Query: 245 QFQNL-LKKSQNNTTNPYVTQK---GVEYIA--ICDKRDLGGEIALKAYLSAQNTPTKIE 298
           +++   +K    + T+ +  Q     V        +             + A     K  
Sbjct: 233 EWEGRLIKMKPGDVTDIFDLQGRKAQVHLFRPGGDNAEKQLTLEQATPQIDAILRQPKAM 292

Query: 299 KHEAEYVKKLRSNAIIHY 316
           +   +Y  +LR+ A+I  
Sbjct: 293 ERFEDYTSQLRNKAVIDI 310


>gi|126732888|ref|ZP_01748679.1| PPIC-type PPIASE domain protein [Sagittula stellata E-37]
 gi|126706664|gb|EBA05738.1| PPIC-type PPIASE domain protein [Sagittula stellata E-37]
          Length = 329

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/284 (11%), Positives = 82/284 (28%), Gaps = 50/284 (17%)

Query: 31  VSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN---GELEKIAVQELIVETLKK 87
            +  +    +++  T+ G  IT G +    A L  Q       +L    +Q+LI + +  
Sbjct: 67  GAALTAEDLAQVVATVGGTDITVGHMMVAKASLPQQYQQIPDAQLWDGLLQQLIQQEVL- 125

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
                                             S   ++        +      +    
Sbjct: 126 --------------------------------SQSKDAEETDLVRLSMENERRSLMAAVA 153

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           +           E++    +  +     +EY    +L              ++  ++   
Sbjct: 154 ITTVAERAVTEDEVQAVYQRDFVDVDQGKEYNASHIL-----------LETKEAAEEVLA 202

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKG 266
                        + ++     + G   +     +   FQ  ++  +  + T P  TQ G
Sbjct: 203 EVKGGADFATVAREKSTGPSGPNGGSLGWFGAGMMVEPFQVAVESLAPGDVTGPVETQFG 262

Query: 267 VEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
              I + + R  +     A++A +  +    K+E+H    ++++
Sbjct: 263 WHVIKLNETRTQEAPPLEAVRAEIVQKIQQDKVEEHIDSLMRQM 306


>gi|313679732|ref|YP_004057471.1| ppic-type peptidyl-prolyl cis-trans isomerase [Oceanithermus
           profundus DSM 14977]
 gi|313152447|gb|ADR36298.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oceanithermus
           profundus DSM 14977]
          Length = 308

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 80/292 (27%), Gaps = 26/292 (8%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQ------------KINGELEKIAVQELIVETLKK 87
             +   +   VIT  D+  +  L   Q                 L+K  +Q ++ + +  
Sbjct: 24  ETVVARVGDHVITQADLDLQFDLFLRQSTGGAALSDEARAQLAPLKKQYLQRMVQDAVVV 83

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           Q  E+ G+  D  T++    + A+        F + L + GI D    + +   ++    
Sbjct: 84  QAAERLGLAPDEATIDRRV-EQAKQRLSGEAAFLAALKQYGIPDVATYRRMTYDAMAYKA 142

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           +      +    E          +        I T    +P  +            D   
Sbjct: 143 MIGWIRQRLRISEAATRMLYLLDREAYAEPEQICTAHILVPSREEAE---------DVIA 193

Query: 208 SRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
                        + +         G    +      P+F+           + P  TQ 
Sbjct: 194 RLKGGADFAELAREVSQDPGSAPRGGDLGCVALGRFVPEFERAALALQPGQVSEPVQTQF 253

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           G   I + D+R           +  Q            +VK L ++A    Y
Sbjct: 254 GWHVIRMNDRRPARV--LPYEEVRGQIRAKIEGLAIERFVKNLVAHADAEVY 303


>gi|294340130|emb|CAZ88501.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas
           sp. 3As]
          Length = 262

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/306 (15%), Positives = 96/306 (31%), Gaps = 52/306 (16%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDG---DISKRIALLKLQKINGE 71
           +L    +L +  +    +   WA +     T+NG+ I       ++  +A  + Q +  +
Sbjct: 1   MLKLSRILAVAALSCAFAAPVWAQN---IATVNGKPIPQSLADSVANSMAKQQGQAVTPQ 57

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           L+++   ELI   +  QE +K G+  ++   +                            
Sbjct: 58  LKEMVKNELISREVMVQEADKLGLDKETAVQDEI-------------------------- 91

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                 +A Q+I    + N ++ K+   + +I A   K              +       
Sbjct: 92  -----RIARQNILIRALFNAYLQKHPITDAQIKAEYDKFVKSFGSTEYKAQHILVPS--- 143

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNL 249
                  +K  +D      +  K     +K++       + G   +   ++  P F + L
Sbjct: 144 -------EKEAQDIIAQLKKGAKFSELAKKYSKDTGSAANGGDLGWSTPNNYVPPFAKAL 196

Query: 250 LKKSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
                   T  P  +Q G   I +   R           L  Q       +   +Y  +L
Sbjct: 197 EALKPGQYTQTPVQSQFGWHVIKLDATRPAKA--PTLDQLKPQIQAELQRQEVTKYQDEL 254

Query: 309 RSNAII 314
           R+ A I
Sbjct: 255 RAKAKI 260


>gi|221640663|ref|YP_002526925.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides KD131]
 gi|332559643|ref|ZP_08413965.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides WS8N]
 gi|221161444|gb|ACM02424.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides KD131]
 gi|332277355|gb|EGJ22670.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides WS8N]
          Length = 284

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 77/281 (27%), Gaps = 50/281 (17%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKIN---GELEKIAVQELIVETLKKQEIEKSG 94
            +  +  T+NG+ IT G +    A L  Q  +     L K  +++LI +           
Sbjct: 31  TADTVVATVNGQDITLGHMIALRAGLPDQYQSLPDDALFKGILEQLIQQAALA------- 83

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
                                      S        D    Q      +    ++     
Sbjct: 84  --------------------------QSIEGSVTKRDQLSLQNEERGFLSAVAMRRVVEG 117

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
              +  ++   + +        EY    +L S  D   + +  +                
Sbjct: 118 AVTDEALQAAYDARFADAAPQTEYNASHILVSSEDEAKKLKEEID-----------GGAD 166

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAIC 273
                ++ +S     + G   +     +   F++ + K        P  TQ G   + + 
Sbjct: 167 FATLAKEHSSDGAAANGGSLGWFGLGMMVKPFEDAVVKMKPGEVVGPIQTQFGWHLVKLN 226

Query: 274 DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           + R    E      +  +      ++  A ++ ++ + A I
Sbjct: 227 ETR--IAEKPSLDDMRDELAGQIEQEAVARHIDEVTAKAEI 265


>gi|253999166|ref|YP_003051229.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
           SIP3-4]
 gi|253985845|gb|ACT50702.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
           SIP3-4]
          Length = 632

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 54/397 (13%), Positives = 104/397 (26%), Gaps = 94/397 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +      ++  L    V I F IV I +Y   A SS     ++GE I+  + +  +
Sbjct: 1   MLEAIRERSKSWLAKLILAAVTIPFAIVGIDTYLRDAGSSVSIAKVDGESISVQEYNNSM 60

Query: 61  ALLKLQKI-----------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--- 106
             L+ Q               ++++  +  LI+  L    + KS        ++      
Sbjct: 61  QRLRNQLQAEGKTDPSVLEQPDVKQSILDRLIINRLLNNAVTKSHFAIGDAALSDHIITL 120

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK----------------- 149
            +   N   S E +   L    +  + F+  +    +     +                 
Sbjct: 121 PEFQENGKFSQETYDRLLTSNRLTPSQFESTMRTDLLVQQAREGLAALAYLPEPISKQTL 180

Query: 150 ----------------NDFMLKYGNLEMEIPANKQKMKNITV------------------ 175
                            DF+ +    E +I A   + K+                     
Sbjct: 181 ATEHQQREVTIAEIKTADFLDQVKVDEAQIKAYYDQHKDKFKVPEQVKLEFVLFSSNNLI 240

Query: 176 ----------------------REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                                      R     I           Q+  K AEE   ++ 
Sbjct: 241 PKVQVSDEEVKKYYDENAAKFQGNEQRRASHILISFGVSATTEAKQQAKKQAEEVLAQVR 300

Query: 214 KDCNKLEKFASKI-----HDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGV 267
           +  ++    A K           G         +   F++ +        +N   ++ G 
Sbjct: 301 QHPDQFADLAKKYSKDPGSAEKGGDLGSFGRGMMVKPFEDAVFSMKPGEISNLVESEFGY 360

Query: 268 EYIAICDKR-DLGGEIALKAYLSAQNTPTKIEKHEAE 303
             I + +      G  A K  + A+    K     AE
Sbjct: 361 HIIKLTEITGQSQGFDAAKPQIKAELLYQKAIALFAE 397



 Score = 36.2 bits (81), Expect = 7.1,   Method: Composition-based stats.
 Identities = 23/215 (10%), Positives = 53/215 (24%), Gaps = 12/215 (5%)

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
           N  +  +  S        G           +      K+D ++     E  +   +    
Sbjct: 403 NNMVYEQSTSLKPVADAFGLQVQHTDWISHADGAKYFKSDKLMNMVFAEEVLKDKRNTEA 462

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
                  LI   +        ++   V+  I+   ++ L       K E   + +     
Sbjct: 463 VEVSPNNLISARVVDYKPAAPRSYEEVKAGIEGVLKAELAAKLAIKKGEAALADLRQGKS 522

Query: 232 GKAQYLLESDLH------------PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
            +  ++    +                  +             + KG   I +     L 
Sbjct: 523 PQLDWIPPVTIDRSNAQGLTDVAMNNAFKIDVSKLPAYAGVADSNKGYLLIKVNGVNTLP 582

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                    + +       ++ A YVK L+  + I
Sbjct: 583 ANEDADKASARELQAALASEYVAAYVKSLKDKSKI 617


>gi|261245325|emb|CBG23113.1| survival protein SurA precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
          Length = 428

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 105/311 (33%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  +
Sbjct: 67  RHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANIAKQNNMTMDQMRSRLAYDGLNYS 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + I  +V  N+   +   L  E+ A  +++         +      I   + 
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDASTELNLSHILIALPEN 186

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                V    + AE          +       +++    +  G+  +    +L   F   
Sbjct: 187 PTSEQVNDAQRQAESIVEEARNSADFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R     +        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMNDQQARLK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEEI--AADIK 315



 Score = 82.8 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 90/287 (31%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q          +  L    +   E   S    D+    
Sbjct: 143 NNEVRRRITV--LPQEVDALAKQIGTQNDASTELN-LSHILIALPENPTSEQVNDAQRQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V+ ARN+    +   ++   Q         +  IQ +     +              
Sbjct: 200 ESIVEEARNSADFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   + + ++I+V E   R +L         +Q    K  + A + +   
Sbjct: 260 RSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMN-DQQARLKLEEIAADIKSGK 318

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYI 270
                  ++++         G   +       P F++ L K      + P  +  G   I
Sbjct: 319 TTFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKLHKGQISAPVHSSFGWHLI 378

Query: 271 AICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R +   + A K          K  +  A ++++ R++A +  
Sbjct: 379 ELLDTRKVDKTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKI 425


>gi|320668802|gb|EFX35597.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7
           str. LSU-61]
          Length = 428

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 107/311 (34%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------L 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  N
Sbjct: 67  RHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + I  +V  N+   +   L  E+ +  Q++ N       +      IP  + 
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                V +    A     +              ++    ++ G+  +    +L   F   
Sbjct: 187 PTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQI--AADIK 315



 Score = 83.6 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 91/287 (31%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q  N       +  L    +   E   S    ++ +  
Sbjct: 143 NNEVRRRITI--LPQEVESLAQQVGNQNDASTELN-LSHILIPLPENPTSDQVNEAESQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V  ARN     +   +    Q   +     +  IQ +     +              
Sbjct: 200 RAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   + + KNI+V E   R +L          Q  V K  + A + +   
Sbjct: 260 RSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARV-KLEQIAADIKSGK 318

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYI 270
                  ++F+         G   +       P F++     ++   + P  +  G   I
Sbjct: 319 TTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTHLNKGQMSAPVHSSFGWHLI 378

Query: 271 AICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R++   + A K          K  +  A ++++ R++A +  
Sbjct: 379 ELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKI 425


>gi|254451174|ref|ZP_05064611.1| foldase protein PrsA [Octadecabacter antarcticus 238]
 gi|198265580|gb|EDY89850.1| foldase protein PrsA [Octadecabacter antarcticus 238]
          Length = 284

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 28/302 (9%), Positives = 75/302 (24%), Gaps = 45/302 (14%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           KLL +  +             +   +  +  ++NG  IT G +    + L  Q      +
Sbjct: 6   KLLASAALFTFTASFAYGDAHTDMTAETVVASVNGSDITLGQLVMLRSQLPEQYQQLA-D 64

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
            +    LI +              +   +        +  G++  +              
Sbjct: 65  DVVFNGLIEQ------------LVNQQLLGDTLEVEPKRVGIAIANE------------- 99

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                        +   + +  + +  ++    +               ++     N   
Sbjct: 100 ----------VRSLRAGEVVNTFTSAPVDEADLQATYDARFAD------IVPEAEYNASH 143

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL-KK 252
                ++   +                + ++     S G   +     + P F+  +   
Sbjct: 144 ILVETEEEAIEIGTMIDDGADFAETAVEKSTGPSGPSGGDLGWFGLGMMVPAFEEAVLTL 203

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
                + P  TQ G   + + + R+          L  + T    ++     +  L   A
Sbjct: 204 DAGEVSAPVQTQFGWHIVKLNETRETPL--PTLDGLRVELTTGIQQQGLDALITTLTETA 261

Query: 313 II 314
            I
Sbjct: 262 DI 263


>gi|323975779|gb|EGB70875.1| ppic-type ppiase domain-containing protein [Escherichia coli
           TW10509]
          Length = 428

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 107/311 (34%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------L 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  N
Sbjct: 67  RHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + I  +V  N+   +   L  E+ +  Q++ N       +      IP  + 
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                V +    A     +              ++    ++ G+  +    +L   F   
Sbjct: 187 PTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQI--AADIK 315



 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 92/287 (32%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q  N       +  L    +   E   S    ++ +  
Sbjct: 143 NNEVRRRITI--LPQEVESLAQQVGNQNDASTELN-LSHILIPLPENPTSDQVNEAESQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V  ARN     +   +    Q   +     +  IQ +     +              
Sbjct: 200 RAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   + + KNI+V E   R +L          Q  V K  + A + +   
Sbjct: 260 RSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARV-KLEQIAADIKSGK 318

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYI 270
                  ++F+         G   +       P F++   + ++   + P  +  G   I
Sbjct: 319 TTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSVPVHSSFGWHLI 378

Query: 271 AICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R++   + A K          K  +  A ++++ R++A +  
Sbjct: 379 ELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKI 425


>gi|320182962|gb|EFW57830.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella flexneri CDC
           796-83]
          Length = 428

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 107/311 (34%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------L 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  N
Sbjct: 67  RHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + I  +V  N+   +   L  E+ +  Q++ N       +      IP  + 
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                V +    A     +              ++    ++ G+  +    +L   F   
Sbjct: 187 PTSDQVNEAESQARAIVDQARNGDDFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQI--AADIK 315



 Score = 83.2 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 92/287 (32%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q  N       +  L    +   E   S    ++ +  
Sbjct: 143 NNEVRRRITI--LPQEVESLAQQVGNQNDASTELN-LSHILIPLPENPTSDQVNEAESQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V  ARN     +   +    Q   +     +  IQ +     +              
Sbjct: 200 RAIVDQARNGDDFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   + + KNI+V E   R +L          Q  V K  + A + +   
Sbjct: 260 RSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARV-KLEQIAADIKSGK 318

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYI 270
                  ++F+         G   +       P F++   + ++   + P  +  G   I
Sbjct: 319 TTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLI 378

Query: 271 AICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R++   + A K          K  +  A ++++ R++A +  
Sbjct: 379 ELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKI 425


>gi|194429871|ref|ZP_03062383.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli B171]
 gi|194412090|gb|EDX28400.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli B171]
          Length = 428

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 107/311 (34%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------L 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  N
Sbjct: 67  RHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + I  +V  N+   +   L  E+ +  Q++ N       +      IP  + 
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                V +    A     +              ++    ++ G+  +    +L   F   
Sbjct: 187 PTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWSRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQI--AADIK 315



 Score = 83.6 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 92/287 (32%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q  N       +  L    +   E   S    ++ +  
Sbjct: 143 NNEVRRRITI--LPQEVESLAQQVGNQNDASTELN-LSHILIPLPENPTSDQVNEAESQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V  ARN     +   +    Q   +     +  IQ +     +              
Sbjct: 200 RAIVDQARNGADFGKLAIAHSADQQALNGGQMGWSRIQELPGIFAQALSTAKKGDIVGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   + + KNI+V E   R +L          Q  V K  + A + +   
Sbjct: 260 RSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARV-KLEQIAADIKSGK 318

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYI 270
                  ++F+         G   +       P F++   + ++   + P  +  G   I
Sbjct: 319 TTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLI 378

Query: 271 AICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R++   + A K          K  +  A ++++ R++A +  
Sbjct: 379 ELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKI 425


>gi|300939470|ref|ZP_07154132.1| PPIC-type PPIASE domain protein [Escherichia coli MS 21-1]
 gi|300455691|gb|EFK19184.1| PPIC-type PPIASE domain protein [Escherichia coli MS 21-1]
          Length = 428

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 38/311 (12%), Positives = 106/311 (34%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------L 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  N
Sbjct: 67  RHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + I  +V  N+   +   L  E+ +  Q++ N       +      IP  + 
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKD---AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                V +         +               ++    ++ G+  +    +L   F   
Sbjct: 187 PTSDQVNEAESQARTIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQI--AADIK 315



 Score = 82.8 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 92/287 (32%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q  N       +  L    +   E   S    ++ +  
Sbjct: 143 NNEVRRRITI--LPQEVESLAQQVGNQNDASTELN-LSHILIPLPENPTSDQVNEAESQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V  ARN     +   +    Q   +     +  IQ +     +              
Sbjct: 200 RTIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   + + KNI+V E   R +L          Q  V K  + A + +   
Sbjct: 260 RSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARV-KLEQIAADIKSGK 318

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYI 270
                  ++F+         G   +       P F++   + ++   + P  +  G   I
Sbjct: 319 TTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLI 378

Query: 271 AICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R++   + A K          K  +  A ++++ R++A +  
Sbjct: 379 ELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKI 425


>gi|323964847|gb|EGB60314.1| ppic-type ppiase domain-containing protein [Escherichia coli M863]
 gi|327255033|gb|EGE66636.1| chaperone surA [Escherichia coli STEC_7v]
          Length = 428

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 107/311 (34%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------L 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  N
Sbjct: 67  RHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + I  +V  N+   +   L  E+ +  Q++ N       +      IP  + 
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQYDASTELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                V +    A     +              ++    ++ G+  +    +L   F   
Sbjct: 187 PTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQI--AADIK 315



 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 60/168 (35%), Gaps = 4/168 (2%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                G   +++   + + KNI+V E   R +L          Q  V K  + A + +  
Sbjct: 259 IRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARV-KLEQIAADIKSG 317

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEY 269
                   ++F+         G   +       P F++   + ++   + P  +  G   
Sbjct: 318 KTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHL 377

Query: 270 IAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           I + D R++   + A K          K  +  A ++++ R++A +  
Sbjct: 378 IELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKI 425


>gi|296135908|ref|YP_003643150.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia
           K12]
 gi|295796030|gb|ADG30820.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia
           K12]
          Length = 262

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 48/306 (15%), Positives = 96/306 (31%), Gaps = 52/306 (16%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDG---DISKRIALLKLQKINGE 71
           +L    +L +  +    +   WA +     T+NG+ I       ++  +A  + Q +  +
Sbjct: 1   MLKLSRILAVAALSCAFAAPVWAQN---IATVNGKPIPQSLADSVANSMAKQQGQAVTPQ 57

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           L+++   ELI   +  QE +K G+  ++   +                            
Sbjct: 58  LKEMVKNELISREVMVQEADKLGLDKETAVQDEI-------------------------- 91

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                 +A Q+I    + N ++ K+   E +I A   K              +       
Sbjct: 92  -----RIARQNILIRALFNAYLQKHPITEAQIKAEYDKFVKSFGSTEYKAQHILVPS--- 143

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLL 250
                  +K  +D      +  K     +K++       + G   +   ++  P F   L
Sbjct: 144 -------EKEAQDIIAQLKKGAKFSELAKKYSKDTGSAANGGDLGWSTPNNYVPPFAKAL 196

Query: 251 KK-SQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
           +       T  P  +Q G   I +   R           L  Q       +   +Y  +L
Sbjct: 197 EALKPGQYTQTPVQSQFGWHVIKLDATRPAKA--PTLDQLKPQIQAELQRQEVTKYQDEL 254

Query: 309 RSNAII 314
           R+ A I
Sbjct: 255 RAKAKI 260


>gi|15799738|ref|NP_285750.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7
           EDL933]
 gi|15829312|ref|NP_308085.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7
           str. Sakai]
 gi|16128047|ref|NP_414595.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli str.
           K-12 substr. MG1655]
 gi|24111499|ref|NP_706009.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella flexneri 2a str.
           301]
 gi|26245979|ref|NP_752018.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli CFT073]
 gi|30061620|ref|NP_835791.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella flexneri 2a str.
           2457T]
 gi|74310672|ref|YP_309091.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella sonnei Ss046]
 gi|82542659|ref|YP_406606.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella boydii Sb227]
 gi|89106937|ref|AP_000717.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli str. K-12
           substr. W3110]
 gi|91209115|ref|YP_539101.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli UTI89]
 gi|110804119|ref|YP_687639.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella flexneri 5 str.
           8401]
 gi|117622343|ref|YP_851256.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli APEC O1]
 gi|157155530|ref|YP_001461225.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli E24377A]
 gi|168751687|ref|ZP_02776709.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4113]
 gi|168756884|ref|ZP_02781891.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4401]
 gi|168762820|ref|ZP_02787827.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4501]
 gi|168766748|ref|ZP_02791755.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4486]
 gi|168776976|ref|ZP_02801983.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4196]
 gi|168781757|ref|ZP_02806764.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4076]
 gi|168785111|ref|ZP_02810118.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC869]
 gi|170021589|ref|YP_001726543.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli ATCC
           8739]
 gi|170079716|ref|YP_001729036.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli str.
           K-12 substr. DH10B]
 gi|170682162|ref|YP_001742174.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli SMS-3-5]
 gi|188493538|ref|ZP_03000808.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli 53638]
 gi|191169148|ref|ZP_03030907.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli B7A]
 gi|191174100|ref|ZP_03035614.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli F11]
 gi|193066223|ref|ZP_03047276.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli E22]
 gi|193070992|ref|ZP_03051921.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli E110019]
 gi|194434546|ref|ZP_03066804.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Shigella
           dysenteriae 1012]
 gi|194439697|ref|ZP_03071767.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli 101-1]
 gi|195937729|ref|ZP_03083111.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7
           str. EC4024]
 gi|208807378|ref|ZP_03249715.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4206]
 gi|208812243|ref|ZP_03253572.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4045]
 gi|208818190|ref|ZP_03258510.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4042]
 gi|209398433|ref|YP_002268663.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4115]
 gi|209917245|ref|YP_002291329.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli SE11]
 gi|215485217|ref|YP_002327648.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O127:H6
           str. E2348/69]
 gi|217325032|ref|ZP_03441116.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. TW14588]
 gi|218552638|ref|YP_002385551.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli IAI1]
 gi|218556994|ref|YP_002389907.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli S88]
 gi|218687931|ref|YP_002396143.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli ED1a]
 gi|218693525|ref|YP_002401192.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli 55989]
 gi|218698475|ref|YP_002406104.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli IAI39]
 gi|218703314|ref|YP_002410833.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli UMN026]
 gi|227885046|ref|ZP_04002851.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli 83972]
 gi|238899458|ref|YP_002925254.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
           BW2952]
 gi|253774915|ref|YP_003037746.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254037470|ref|ZP_04871547.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|254160178|ref|YP_003043286.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B str.
           REL606]
 gi|254791192|ref|YP_003076029.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7
           str. TW14359]
 gi|256020107|ref|ZP_05433972.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella sp. D9]
 gi|256025370|ref|ZP_05439235.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia sp. 4_1_40B]
 gi|260842290|ref|YP_003220068.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O103:H2 str.
           12009]
 gi|260853267|ref|YP_003227158.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O26:H11 str.
           11368]
 gi|260866207|ref|YP_003232609.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O111:H- str.
           11128]
 gi|261226813|ref|ZP_05941094.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255216|ref|ZP_05947749.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291280879|ref|YP_003497697.1| Chaperone surA precursor [Escherichia coli O55:H7 str. CB9615]
 gi|293403128|ref|ZP_06647225.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli
           FVEC1412]
 gi|293408148|ref|ZP_06651988.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B354]
 gi|293417931|ref|ZP_06660553.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B185]
 gi|293476717|ref|ZP_06665125.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B088]
 gi|297516939|ref|ZP_06935325.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli OP50]
 gi|298378656|ref|ZP_06988540.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli
           FVEC1302]
 gi|300900923|ref|ZP_07119058.1| PPIC-type PPIASE domain protein [Escherichia coli MS 198-1]
 gi|300919606|ref|ZP_07136098.1| PPIC-type PPIASE domain protein [Escherichia coli MS 115-1]
 gi|300928648|ref|ZP_07144167.1| PPIC-type PPIASE domain protein [Escherichia coli MS 187-1]
 gi|300948657|ref|ZP_07162741.1| PPIC-type PPIASE domain protein [Escherichia coli MS 116-1]
 gi|300956983|ref|ZP_07169235.1| PPIC-type PPIASE domain protein [Escherichia coli MS 175-1]
 gi|300981029|ref|ZP_07175306.1| PPIC-type PPIASE domain protein [Escherichia coli MS 45-1]
 gi|300984196|ref|ZP_07176924.1| PPIC-type PPIASE domain protein [Escherichia coli MS 200-1]
 gi|301024798|ref|ZP_07188436.1| PPIC-type PPIASE domain protein [Escherichia coli MS 196-1]
 gi|301048439|ref|ZP_07195466.1| PPIC-type PPIASE domain protein [Escherichia coli MS 185-1]
 gi|301648380|ref|ZP_07248116.1| PPIC-type PPIASE domain protein [Escherichia coli MS 146-1]
 gi|306815347|ref|ZP_07449496.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli NC101]
 gi|307136656|ref|ZP_07496012.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli H736]
 gi|307311493|ref|ZP_07591135.1| Peptidylprolyl isomerase [Escherichia coli W]
 gi|309796042|ref|ZP_07690454.1| PPIC-type PPIASE domain protein [Escherichia coli MS 145-7]
 gi|312966176|ref|ZP_07780402.1| chaperone surA [Escherichia coli 2362-75]
 gi|312970148|ref|ZP_07784330.1| chaperone surA [Escherichia coli 1827-70]
 gi|331640505|ref|ZP_08341653.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli H736]
 gi|331645163|ref|ZP_08346274.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli M605]
 gi|331661095|ref|ZP_08362027.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli TA206]
 gi|331671573|ref|ZP_08372371.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli TA280]
 gi|331681439|ref|ZP_08382076.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli H299]
 gi|332281260|ref|ZP_08393673.1| survival protein surA [Shigella sp. D9]
 gi|81174735|sp|P0ABZ8|SURA_ECO57 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|81174736|sp|P0ABZ7|SURA_ECOL6 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|81174737|sp|P0ABZ6|SURA_ECOLI RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; AltName: Full=Survival protein A;
           Flags: Precursor
 gi|81174738|sp|P0ABZ9|SURA_SHIFL RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|121956477|sp|Q326I0|SURA_SHIBS RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|121956482|sp|Q3Z5V6|SURA_SHISS RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|122070645|sp|Q1RGE4|SURA_ECOUT RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|12512748|gb|AAG54358.1|AE005182_7 survival protein [Escherichia coli O157:H7 str. EDL933]
 gi|26106376|gb|AAN78562.1|AE016755_62 Survival protein surA precursor [Escherichia coli CFT073]
 gi|1786238|gb|AAC73164.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli str.
           K-12 substr. MG1655]
 gi|13359514|dbj|BAB33481.1| survival protein [Escherichia coli O157:H7 str. Sakai]
 gi|24050252|gb|AAN41716.1| survival protein [Shigella flexneri 2a str. 301]
 gi|30039862|gb|AAP15596.1| survival protein [Shigella flexneri 2a str. 2457T]
 gi|73854149|gb|AAZ86856.1| survival protein [Shigella sonnei Ss046]
 gi|81244070|gb|ABB64778.1| survival protein [Shigella boydii Sb227]
 gi|85674304|dbj|BAB96620.2| peptidyl-prolyl cis-trans isomerase [Escherichia coli str. K12
           substr. W3110]
 gi|91070689|gb|ABE05570.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli UTI89]
 gi|110613667|gb|ABF02334.1| survival protein [Shigella flexneri 5 str. 8401]
 gi|115511467|gb|ABI99541.1| survival protein [Escherichia coli APEC O1]
 gi|157077560|gb|ABV17268.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli E24377A]
 gi|169756517|gb|ACA79216.1| SurA domain [Escherichia coli ATCC 8739]
 gi|169887551|gb|ACB01258.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli str.
           K-12 substr. DH10B]
 gi|170519880|gb|ACB18058.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli SMS-3-5]
 gi|187767718|gb|EDU31562.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4196]
 gi|188014319|gb|EDU52441.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4113]
 gi|188488737|gb|EDU63840.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli 53638]
 gi|189000667|gb|EDU69653.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4076]
 gi|189356117|gb|EDU74536.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4401]
 gi|189363909|gb|EDU82328.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4486]
 gi|189366936|gb|EDU85352.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4501]
 gi|189375016|gb|EDU93432.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC869]
 gi|190900823|gb|EDV60613.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli B7A]
 gi|190905594|gb|EDV65219.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli F11]
 gi|192926148|gb|EDV80789.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli E22]
 gi|192955722|gb|EDV86196.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli E110019]
 gi|194417199|gb|EDX33310.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Shigella
           dysenteriae 1012]
 gi|194421382|gb|EDX37399.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli 101-1]
 gi|208727179|gb|EDZ76780.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4206]
 gi|208733520|gb|EDZ82207.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4045]
 gi|208738313|gb|EDZ85995.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4042]
 gi|209159833|gb|ACI37266.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. EC4115]
 gi|209746874|gb|ACI71744.1| survival protein [Escherichia coli]
 gi|209746876|gb|ACI71745.1| survival protein [Escherichia coli]
 gi|209746878|gb|ACI71746.1| survival protein [Escherichia coli]
 gi|209746880|gb|ACI71747.1| survival protein [Escherichia coli]
 gi|209746882|gb|ACI71748.1| survival protein [Escherichia coli]
 gi|209910504|dbj|BAG75578.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli SE11]
 gi|215263289|emb|CAS07604.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217321253|gb|EEC29677.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli O157:H7 str. TW14588]
 gi|218350257|emb|CAU95940.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
           55989]
 gi|218359406|emb|CAQ96945.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
           IAI1]
 gi|218363763|emb|CAR01424.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli S88]
 gi|218368461|emb|CAR16197.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
           IAI39]
 gi|218425495|emb|CAR06277.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
           ED1a]
 gi|218430411|emb|CAR11278.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
           UMN026]
 gi|222031887|emb|CAP74625.1| chaperone surA [Escherichia coli LF82]
 gi|226840576|gb|EEH72578.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|227837875|gb|EEJ48341.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli 83972]
 gi|238861990|gb|ACR63988.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
           BW2952]
 gi|242375892|emb|CAQ30573.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
           BL21(DE3)]
 gi|253325959|gb|ACT30561.1| Peptidylprolyl isomerase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253972079|gb|ACT37750.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli B
           str. REL606]
 gi|253976288|gb|ACT41958.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
           BL21(DE3)]
 gi|254590592|gb|ACT69953.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
           O157:H7 str. TW14359]
 gi|257751916|dbj|BAI23418.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O26:H11 str.
           11368]
 gi|257757437|dbj|BAI28934.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O103:H2 str.
           12009]
 gi|257762563|dbj|BAI34058.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O111:H- str.
           11128]
 gi|260450738|gb|ACX41160.1| SurA domain protein [Escherichia coli DH1]
 gi|281177270|dbj|BAI53600.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli SE15]
 gi|281599414|gb|ADA72398.1| Chaperone surA precursor [Shigella flexneri 2002017]
 gi|284919836|emb|CBG32891.1| chaperone precursor (peptidyl-prolyl cis-trans isomerase)
           [Escherichia coli 042]
 gi|290760752|gb|ADD54713.1| Chaperone surA precursor [Escherichia coli O55:H7 str. CB9615]
 gi|291321170|gb|EFE60612.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B088]
 gi|291430043|gb|EFF03057.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli
           FVEC1412]
 gi|291430649|gb|EFF03647.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B185]
 gi|291472399|gb|EFF14881.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B354]
 gi|294492943|gb|ADE91699.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           coli IHE3034]
 gi|298280990|gb|EFI22491.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli
           FVEC1302]
 gi|299880288|gb|EFI88499.1| PPIC-type PPIASE domain protein [Escherichia coli MS 196-1]
 gi|300299732|gb|EFJ56117.1| PPIC-type PPIASE domain protein [Escherichia coli MS 185-1]
 gi|300306726|gb|EFJ61246.1| PPIC-type PPIASE domain protein [Escherichia coli MS 200-1]
 gi|300316273|gb|EFJ66057.1| PPIC-type PPIASE domain protein [Escherichia coli MS 175-1]
 gi|300355586|gb|EFJ71456.1| PPIC-type PPIASE domain protein [Escherichia coli MS 198-1]
 gi|300409065|gb|EFJ92603.1| PPIC-type PPIASE domain protein [Escherichia coli MS 45-1]
 gi|300413352|gb|EFJ96662.1| PPIC-type PPIASE domain protein [Escherichia coli MS 115-1]
 gi|300451883|gb|EFK15503.1| PPIC-type PPIASE domain protein [Escherichia coli MS 116-1]
 gi|300463317|gb|EFK26810.1| PPIC-type PPIASE domain protein [Escherichia coli MS 187-1]
 gi|301073515|gb|EFK88321.1| PPIC-type PPIASE domain protein [Escherichia coli MS 146-1]
 gi|305851009|gb|EFM51464.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli NC101]
 gi|306908472|gb|EFN38970.1| Peptidylprolyl isomerase [Escherichia coli W]
 gi|307551900|gb|ADN44675.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli ABU 83972]
 gi|307629629|gb|ADN73933.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli UM146]
 gi|308120284|gb|EFO57546.1| PPIC-type PPIASE domain protein [Escherichia coli MS 145-7]
 gi|309700266|emb|CBI99554.1| chaperone precursor (peptidyl-prolyl cis-trans isomerase)
           [Escherichia coli ETEC H10407]
 gi|310337646|gb|EFQ02757.1| chaperone surA [Escherichia coli 1827-70]
 gi|312289419|gb|EFR17313.1| chaperone surA [Escherichia coli 2362-75]
 gi|312944661|gb|ADR25488.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O83:H1
           str. NRG 857C]
 gi|313646568|gb|EFS11029.1| chaperone surA [Shigella flexneri 2a str. 2457T]
 gi|315059279|gb|ADT73606.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli W]
 gi|315134749|dbj|BAJ41908.1| chaperone surA precursor [Escherichia coli DH1]
 gi|315285117|gb|EFU44562.1| PPIC-type PPIASE domain protein [Escherichia coli MS 110-3]
 gi|315298427|gb|EFU57682.1| PPIC-type PPIASE domain protein [Escherichia coli MS 16-3]
 gi|315616170|gb|EFU96789.1| chaperone surA [Escherichia coli 3431]
 gi|320190424|gb|EFW65074.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7
           str. EC1212]
 gi|320197500|gb|EFW72114.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli
           WV_060327]
 gi|320200427|gb|EFW75013.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli EC4100B]
 gi|320647458|gb|EFX16253.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H-
           str. 493-89]
 gi|320652792|gb|EFX21030.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H-
           str. H 2687]
 gi|320658181|gb|EFX25910.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320663490|gb|EFX30774.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O55:H7
           str. USDA 5905]
 gi|323166105|gb|EFZ51884.1| chaperone surA [Shigella sonnei 53G]
 gi|323171213|gb|EFZ56861.1| chaperone surA [Escherichia coli LT-68]
 gi|323176362|gb|EFZ61954.1| chaperone surA [Escherichia coli 1180]
 gi|323181750|gb|EFZ67163.1| chaperone surA [Escherichia coli 1357]
 gi|323190264|gb|EFZ75540.1| chaperone surA [Escherichia coli RN587/1]
 gi|323380164|gb|ADX52432.1| SurA domain protein [Escherichia coli KO11]
 gi|323935106|gb|EGB31473.1| ppic-type ppiase domain-containing protein [Escherichia coli E1520]
 gi|323939725|gb|EGB35927.1| ppic-type ppiase domain-containing protein [Escherichia coli E482]
 gi|323945684|gb|EGB41732.1| ppic-type ppiase domain-containing protein [Escherichia coli H120]
 gi|323950947|gb|EGB46824.1| ppic-type ppiase domain-containing protein [Escherichia coli H252]
 gi|323955251|gb|EGB51024.1| ppic-type ppiase domain-containing protein [Escherichia coli H263]
 gi|323960002|gb|EGB55648.1| ppic-type ppiase domain-containing protein [Escherichia coli H489]
 gi|323970727|gb|EGB65981.1| ppic-type ppiase domain-containing protein [Escherichia coli TA007]
 gi|324008401|gb|EGB77620.1| PPIC-type PPIASE domain protein [Escherichia coli MS 57-2]
 gi|324012311|gb|EGB81530.1| PPIC-type PPIASE domain protein [Escherichia coli MS 60-1]
 gi|324017678|gb|EGB86897.1| PPIC-type PPIASE domain protein [Escherichia coli MS 117-3]
 gi|324118405|gb|EGC12299.1| ppic-type ppiase domain-containing protein [Escherichia coli E1167]
 gi|326345227|gb|EGD68970.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7
           str. 1125]
 gi|326346920|gb|EGD70654.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7
           str. 1044]
 gi|331040251|gb|EGI12458.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli H736]
 gi|331045920|gb|EGI18039.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli M605]
 gi|331052137|gb|EGI24176.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli TA206]
 gi|331071418|gb|EGI42775.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli TA280]
 gi|331081660|gb|EGI52821.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli H299]
 gi|332097929|gb|EGJ02902.1| chaperone surA [Shigella dysenteriae 155-74]
 gi|332098944|gb|EGJ03895.1| chaperone surA [Shigella boydii 3594-74]
 gi|332103612|gb|EGJ06958.1| survival protein surA [Shigella sp. D9]
 gi|332341385|gb|AEE54719.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli UMNK88]
 gi|332762289|gb|EGJ92556.1| chaperone surA [Shigella flexneri 2747-71]
 gi|332762614|gb|EGJ92879.1| chaperone surA [Shigella flexneri 4343-70]
 gi|332764896|gb|EGJ95124.1| chaperone surA [Shigella flexneri K-671]
 gi|332768842|gb|EGJ99021.1| peptidyl-prolyl cis-trans isomerase [Shigella flexneri 2930-71]
 gi|333009456|gb|EGK28912.1| chaperone surA [Shigella flexneri K-218]
 gi|333011437|gb|EGK30851.1| chaperone surA [Shigella flexneri K-272]
 gi|333021676|gb|EGK40925.1| chaperone surA [Shigella flexneri K-227]
 gi|333022418|gb|EGK41656.1| chaperone surA [Shigella flexneri K-304]
          Length = 428

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 107/311 (34%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------L 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  N
Sbjct: 67  RHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + I  +V  N+   +   L  E+ +  Q++ N       +      IP  + 
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                V +    A     +              ++    ++ G+  +    +L   F   
Sbjct: 187 PTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQI--AADIK 315



 Score = 82.8 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 92/287 (32%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q  N       +  L    +   E   S    ++ +  
Sbjct: 143 NNEVRRRITI--LPQEVESLAQQVGNQNDASTELN-LSHILIPLPENPTSDQVNEAESQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V  ARN     +   +    Q   +     +  IQ +     +              
Sbjct: 200 RAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   + + KNI+V E   R +L          Q  V K  + A + +   
Sbjct: 260 RSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARV-KLEQIAADIKSGK 318

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYI 270
                  ++F+         G   +       P F++   + ++   + P  +  G   I
Sbjct: 319 TTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLI 378

Query: 271 AICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R++   + A K          K  +  A ++++ R++A +  
Sbjct: 379 ELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKI 425


>gi|269138352|ref|YP_003295052.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Edwardsiella
           tarda EIB202]
 gi|267984012|gb|ACY83841.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Edwardsiella
           tarda EIB202]
 gi|304558384|gb|ADM41048.1| Peptidyl-prolyl cis-trans isomerase PpiD [Edwardsiella tarda
           FL6-60]
          Length = 626

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/399 (8%), Positives = 104/399 (26%), Gaps = 87/399 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + +  +  +    ++I F +  + +Y            ++G+ I    + + +
Sbjct: 1   MMDNLRAAANHVVLKVILALIIISFVLTGVGNYLIGGSGDY-AAKVDGQEIGRAQLEQAV 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                    EL K  +  +I + L  Q  +K  +      V  
Sbjct: 60  QNERSRLQQQLGDQFSVLAGNEGYMKELRKQVLSRMIDDVLLDQYAQKLNLAISDAQVKE 119

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                     +       +   + + G+  + + Q +  Q +   +++            
Sbjct: 120 AIRAMPYFQTDNHFDNAKYLDMVARLGLSPDAYAQLMRQQLVTQQLIQGFTATGFTLPAE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI- 187
                                +  M +    + E+    Q+ ++  +    ++     + 
Sbjct: 180 VDALAALTMQQRQVSLATIDISKLMPQQQVSDAELQGYYQQHQSSFIAPEAVKVRYIEMD 239

Query: 188 ------------------------------PDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
                                           +    Q   +   K              
Sbjct: 240 AAAINDKMTVSDAEISAYYDQHKGSFTQPARSDYSVIQVKTEAEAKAIAAQLANGADFAT 299

Query: 218 KLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
             ++ ++  I   + G+  +L       + +      + + + P  +  G   + + D +
Sbjct: 300 LAKEKSTDIISRKNGGELGWLEPETTPDEIRAAKLSHKGDVSAPIASSVGYLIVRLNDMQ 359

Query: 277 DLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
               +    ++A ++ +    K         +K+   A 
Sbjct: 360 PAVVKPLSEVRAEIADKVKQQKALDAFYALQQKVSDAAT 398


>gi|313201268|ref|YP_004039926.1| ppic-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
           MP688]
 gi|312440584|gb|ADQ84690.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
           MP688]
          Length = 632

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 54/397 (13%), Positives = 104/397 (26%), Gaps = 94/397 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +      ++  L    V I F IV I +Y   A SS     ++GE I+  + +  +
Sbjct: 1   MLEAIRERSKSWLAKLILAAVTIPFAIVGIDTYLRDAGSSVSIAKVDGESISVQEYNNSM 60

Query: 61  ALLKLQKI-----------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--- 106
             L+ Q               ++++  +  LI+  L    + KS        ++      
Sbjct: 61  QRLRNQLQAEGKTDPSVLEQPDVKQSILDRLIINRLLNNAVTKSHFAIGDAALSDHIITL 120

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK----------------- 149
            +   N   S E +   L    +  + F+  +    +     +                 
Sbjct: 121 PEFQENGKFSQETYDRLLTSNRLTPSQFESTMRTDLLVQQAREGLAALAYLPEPISKQTL 180

Query: 150 ----------------NDFMLKYGNLEMEIPANKQKMKNITV------------------ 175
                            DF+ +    E +I A   + K+                     
Sbjct: 181 ATEHQQREVTIAEIKTADFLDQVKVDEAQIKAYYDQHKDKFKVPEQVKLEFVLFSSNNLI 240

Query: 176 ----------------------REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                                      R     I           Q+  K AEE   ++ 
Sbjct: 241 PKVQVSDEEVKKYYDENAAKFQGNEQRRASHILISFGVSATAEAKQQAKKQAEEVLAQVR 300

Query: 214 KDCNKLEKFASKI-----HDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGV 267
           +  ++    A K           G         +   F++ +        +N   ++ G 
Sbjct: 301 QHPDQFADLAKKYSKDPGSAEKGGDLGSFGRGMMVKPFEDAVFSMKPGEISNLVESEFGY 360

Query: 268 EYIAICDKR-DLGGEIALKAYLSAQNTPTKIEKHEAE 303
             I + +      G  A K  + A+    K     AE
Sbjct: 361 HIIKLTEITGQSQGFDAAKPQIKAELLYQKAIALFAE 397



 Score = 36.2 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 21/215 (9%), Positives = 51/215 (23%), Gaps = 12/215 (5%)

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
           N  +  +  S        G           +      K+D ++     E  +   +    
Sbjct: 403 NNMVYEQSTSLKPVADAFGLQVQHTDWISHADGAKYFKSDKLMNMVFAEEVLKDKRNTEA 462

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
                  LI   +        ++   V+  I+   ++         K E   + +     
Sbjct: 463 VEVSPNNLISARVVDYKPAAPRSYEEVKAGIEGVLKAEQAAKLAIKKGEAALADLRQGKS 522

Query: 232 GKAQYLLESDLH------------PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
            +  ++    +                  +             + KG   I +       
Sbjct: 523 PQLDWIPPVTIDRSNAQGLTDVAMNNAFKIDVSKLPAYAGVADSNKGYLLIKVNGVNTPP 582

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                    + +       ++ A YVK L+  + I
Sbjct: 583 ANEDTDKASARELQAALASEYVAAYVKSLKDKSKI 617


>gi|126739402|ref|ZP_01755095.1| PPIC-type PPIASE domain [Roseobacter sp. SK209-2-6]
 gi|126719502|gb|EBA16211.1| PPIC-type PPIASE domain [Roseobacter sp. SK209-2-6]
          Length = 426

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 102/276 (36%), Gaps = 7/276 (2%)

Query: 5   VFTSLSDF-IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL 63
           +  ++  F +          +   +                T++  VIT+ ++ +R   +
Sbjct: 14  IRHAMHKFSVSARLLGAAFALTFGLGFAPSLEAQSLFAPAITVDSAVITNYELDQRERFM 73

Query: 64  KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
            L +  G++ + A +ELI + LK   +++ GI  D   +     + A    LS E+F   
Sbjct: 74  ALLRTPGDIAEKAREELIDDRLKLAILDEFGIEVDDEEIKQGMTELAGRANLSLEEFLGV 133

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
           L + GI     +    +   W + +   ++ +    E EI     +  +  V+  L   +
Sbjct: 134 LRQNGIAPETVRDLTRVGISWRNFLGARYLSQARPTEEEIDRAMGQAGSGGVQVLLSELI 193

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
           +     N  Q + F+Q+                +   ++++     + G+  ++  + L 
Sbjct: 194 VPINEQNASQVEQFIQQVG-----KLKSYDAFSSAATQYSAADSRNNGGRLPWMNLTKLP 248

Query: 244 PQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDL 278
           PQ Q ++ +      T P   Q  V    +   R++
Sbjct: 249 PQLQAVVLELDLGEITEPVPLQGAVALFQMRGLREI 284



 Score = 39.7 bits (90), Expect = 0.66,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 21/46 (45%)

Query: 269 YIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            + +C +    GE   +  ++   T  +I  +    + +LR++A I
Sbjct: 378 LLMLCGRTAELGEGQSRETVANALTQQRINSYSQSLLNQLRADARI 423


>gi|255524040|ref|ZP_05391002.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           carboxidivorans P7]
 gi|296186897|ref|ZP_06855298.1| PPIC-type PPIASE domain protein [Clostridium carboxidivorans P7]
 gi|255512327|gb|EET88605.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           carboxidivorans P7]
 gi|296048611|gb|EFG88044.1| PPIC-type PPIASE domain protein [Clostridium carboxidivorans P7]
          Length = 341

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/333 (9%), Positives = 94/333 (28%), Gaps = 24/333 (7%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
             S+   +  +             +++    A+ + +  T+NGE IT G++     L+ +
Sbjct: 1   MKSVKKLVSAVLISAFAFSTVGCNMIAKTPEAIKNSVVATVNGEKITRGELDSNPNLMGV 60

Query: 66  QKINGE------------------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
                +                   +   +  +I   + +Q+ ++  +  D   +     
Sbjct: 61  VAQIKQQYGEDYEKNDDAKSILKEQKAQVLDTMIEAKVIEQKAKELKVLPDDAKLKAEVD 120

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
           +   N         +   +  +   +  +       +  +   + +    N   +     
Sbjct: 121 KQISNIKQQQFGNDATKFQAALKQQNLTEETLKNMYYTQMKNQETVTNVTNNVGKDVKVD 180

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-I 226
            K      +    +        +        +   K  +    +        ++ ++   
Sbjct: 181 DKSIQDYYKNNPYKFTEKPDRIHTAHILVKTEDEAKKVKARLDKGEDFAKVAKEVSTDTA 240

Query: 227 HDVSIGKAQYLL---ESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE-- 281
                G   ++               +   +   + P  +Q G   I   +K +   +  
Sbjct: 241 TKDKGGDLGFVNYVDSGFDAAFMAGAIALKKGAVSAPVKSQFGYHIIKCIEKEEYPVKKI 300

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            A+KA +  Q    + +K   + V + + +A I
Sbjct: 301 DAVKAQIKTQLETEQKQKKYQDKVAEWKKSAKI 333


>gi|254468048|ref|ZP_05081454.1| chaperone SurA, putative [beta proteobacterium KB13]
 gi|207086858|gb|EDZ64141.1| chaperone SurA, putative [beta proteobacterium KB13]
          Length = 428

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 50/291 (17%), Positives = 101/291 (34%), Gaps = 14/291 (4%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD----ISKRIALLK 64
           ++  IK++    +L+ F  V      S+    RI   +N +VIT  D    + K +   +
Sbjct: 2   INYLIKIIFFLCLLVNFSFVS-----SYQELDRIVAIVNKDVITHNDLTEGVDKALLFFQ 56

Query: 65  LQK----INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
                      +EK  + ELI + + +   E   I      ++           ++ ++ 
Sbjct: 57  QNSIEPPEESIIEKKVLDELIEQKIIEGYAEDWNIKASQEDIDSLIQNILSANQITLDEL 116

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
            S L +QG   +   + L+ + I   V   +   K    E EI  +K+KM  I    + +
Sbjct: 117 KSNLKQQGSSYDKLLKSLSYEIILKKVKNREISSKLNISEYEIKKHKEKMAKIRPDVFDL 176

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
             +L          +   ++++ +    +L+         +F+        G    L +S
Sbjct: 177 SHILIKFSSEPTAEEKKEKRKLGEEIFDKLKTDDFAKIAYEFSDSPDANEGGSLGKLKQS 236

Query: 241 DLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA 290
           +L   F   L   S    + P+ +  G+  I I               +  
Sbjct: 237 ELPEIFIDKLNNLSAGEYSTPFESNNGIHIIKINQVESYSESKNSSQKIKK 287



 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 54/148 (36%), Gaps = 2/148 (1%)

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS 230
           KN + +          +  +++ ++  V K++K  +             +K++      +
Sbjct: 279 KNSSQKIKKYFIKHIVLKTSEVASEDDVIKKLKRYKNEIDSGADFSVIAKKYSEDFSAAN 338

Query: 231 IGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR-DLGGEIALKAYL 288
            G+  ++ E  L  +F + L    QN  + P+ T  G   I   D + +      +   +
Sbjct: 339 GGEIGWINEGLLDQEFDKQLSIIDQNEVSQPFKTDLGWHIIQYTDSKFEDLASENIDNKI 398

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             +    + E    ++   L+S + I  
Sbjct: 399 KYELINERTELLYQDWFSALKSESFIEI 426


>gi|190893605|ref|YP_001980147.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli CIAT 652]
 gi|190698884|gb|ACE92969.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli CIAT 652]
 gi|327193395|gb|EGE60295.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli CNPAF512]
          Length = 293

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/301 (10%), Positives = 80/301 (26%), Gaps = 49/301 (16%)

Query: 22  LIIFCIVPIVSYKSWA-MSSRIRTTINGEVITDGDISKRIALL---KLQKINGELEKIAV 77
             +      V++++ A     +   +    I   ++   +A L     Q  + + +  A+
Sbjct: 7   FALLAFATFVAFQAPAHAEDAVVAKVGNLEIHQSELDLAVANLDPQLAQLPDDQKKVAAL 66

Query: 78  QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY 137
              I   L   +     +                                        QY
Sbjct: 67  SAAIDVKLLAADAIAEKLDQTDEFKKR------------------------------MQY 96

Query: 138 LAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGF 197
           L+ + +     K   +      E++   +K+        E   R +L             
Sbjct: 97  LSDRELHNAYFKKHVVDTVTPDEVKARYDKEVAALPKQEEVHARHIL-----------VK 145

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNN 256
            +   K+  +            ++ ++  +    G   Y     +  +F++      +  
Sbjct: 146 TEDEAKEIIKQLDAGKDFAELAKEKSTDPNKSEGGDLGYFSRGRMVKEFEDAAFALEKGA 205

Query: 257 TTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            +  P  T  G   I + DKRD          +  Q     +       + + +++A I 
Sbjct: 206 YSKTPVKTDFGYHVIKVEDKRDAPP--PPFDQVQDQVRQLVMRDKYLALLNQAKTSAKIE 263

Query: 316 Y 316
            
Sbjct: 264 I 264


>gi|192358925|ref|YP_001981367.1| peptidyl-prolyl cis-trans isomerase SurA [Cellvibrio japonicus
           Ueda107]
 gi|190685090|gb|ACE82768.1| peptidyl-prolyl cis-trans isomerase SurA [Cellvibrio japonicus
           Ueda107]
          Length = 437

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/318 (12%), Positives = 105/318 (33%), Gaps = 16/318 (5%)

Query: 10  SDFIKLLTTYFVLIIFCIVP-IVSYKSWAMSSRIRTTINGEVITDGDISKRIALL----- 63
           S  +KL     +  +      + +        R+   ++ +V+ + ++++R A +     
Sbjct: 7   SGLVKLGKGMLLGSLLVYAGWLQAQPRTVELDRVVAIVDDDVVLESELNERKASIMERLQ 66

Query: 64  ---KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
              +       L K  +++LIVE ++    ++  I+ D   ++    + A+   +SA   
Sbjct: 67  GQYQQLPPEDVLNKQILEQLIVERIELGLAKRYDISIDEAEIDQAIARIAQKNQVSAAAL 126

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
            + L +QG+  +  ++ L        + +     +    E +I                 
Sbjct: 127 EADLKRQGLDMSGLREQLRKDLTINQLQQGVVNSRIKISEQDIDNFLASSDGKYATSPDY 186

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYL 237
                 I  +   +   V++    A +   +             ++     +  G   + 
Sbjct: 187 HIGHILISVSSSADAEMVEQAENQANDIYKKLQGGADFAQMAISYSKDQAALQGGDIGWR 246

Query: 238 LESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD---LGGEIALKAYLSAQNT 293
             + L   F N + K S    + P+ +  G   +   ++R       E     ++  + +
Sbjct: 247 KLAQLPELFGNEMMKLSPGQVSKPFRSGAGFHILKNIEQRGGGAQMVEQTHARHILVKTS 306

Query: 294 PTKIEKHEAEYVKKLRSN 311
               ++   E +  LR  
Sbjct: 307 EIMDDRQAREKLLGLRER 324



 Score = 87.8 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/280 (9%), Positives = 81/280 (28%), Gaps = 9/280 (3%)

Query: 45  TINGEV-ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            +N  + I++ DI   +A    +             LI  +              +N + 
Sbjct: 157 VVNSRIKISEQDIDNFLASSDGKYATSPDYH-IGHILISVSSSADAEMVEQAENQANDIY 215

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK----NDFMLKYGNL 159
                 A    ++          QG      K     +    +++K              
Sbjct: 216 KKLQGGADFAQMAISYSKDQAALQGGDIGWRKLAQLPELFGNEMMKLSPGQVSKPFRSGA 275

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
              I  N ++                 +  +++ +    ++++    E  L+        
Sbjct: 276 GFHILKNIEQRGGGAQMVEQTHARHILVKTSEIMDDRQAREKLLGLRERILKGEDFAKLA 335

Query: 220 EKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAICDKRD 277
            + +      +S G   +       P F+  + ++   + + P+ +Q G   + + ++R 
Sbjct: 336 RENSEDTGSMLSGGDLGWSTPGMFVPAFEEAMAQTGIGDISRPFKSQFGWHILQVLERRQ 395

Query: 278 LG-GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
               +   +   +      + ++    ++ ++R  A +  
Sbjct: 396 TDMSDRMKRNQAANVLRSRRFDEEFQLWLTQIREEAYVEI 435


>gi|320179614|gb|EFW54563.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella boydii ATCC
           9905]
          Length = 428

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 107/311 (34%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------L 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  N
Sbjct: 67  RHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + I  +V  N+   +   L  E+ +  Q++ N       +      IP  + 
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                V +    A     +              ++    ++ G+  +    +L   F   
Sbjct: 187 PTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQI--AADIK 315



 Score = 83.2 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 92/287 (32%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q  N       +  L    +   E   S    ++ +  
Sbjct: 143 NNEVRRRITI--LPQEVESLAQQVGNQNDASTELN-LSHILIPLPENPTSDQVNEAESQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V  ARN     +   +    Q   +     +  IQ +     +              
Sbjct: 200 RAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   + + KNI+V E   R +L          Q  V K  + A + +   
Sbjct: 260 RSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARV-KLEQIAADIKSGK 318

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYI 270
                  ++F+         G   +       P F++   + ++   + P  +  G   I
Sbjct: 319 TAFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLI 378

Query: 271 AICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R++   + A K          K  +  A ++++ R++A +  
Sbjct: 379 ELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKI 425


>gi|27363507|ref|NP_759035.1| peptidyl-prolyl cis-trans isomerase ppiD [Vibrio vulnificus CMCP6]
 gi|27359623|gb|AAO08562.1| Peptidyl-prolyl cis-trans isomerase ppiD [Vibrio vulnificus CMCP6]
          Length = 619

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 42/406 (10%), Positives = 108/406 (26%), Gaps = 92/406 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + SY     S+     +    I  G+     
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYLVSGSSNS-AAKVGNVEIGRGEFEMAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +  +                    K  +  +I + L  Q  E  G+      V  
Sbjct: 60  QNERNRMQSQLGDYFSQLLADPAYVESFRKSVLDRMINDVLLDQHAESLGLRISDAQVRS 119

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                 +  ++   + + + + L + G   + F +Y+  + I   ++             
Sbjct: 120 MILAMPEFQQDGKFNQDVYQATLRRAGYSPDSFAEYMRRELIRSQLLDALQTSEFTLPGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                 DF  K    E +I     + K+   R   ++     + 
Sbjct: 180 VDAEGKLFTQTRDVRTVTLNIRDFADKVTLTEEDIQKYYDENKSRFTRPEQVKVSYIELA 239

Query: 189 DNKLQNQGFV---------------------------------QKRIKDAEESRLRLPKD 215
            + L+ Q  +                                 Q + +   +        
Sbjct: 240 ADSLKQQITISDDEVKQYYQEHLDKYSSEEQRRVAHILIEGDDQAKAQAILDELNAGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               ++ +       + G+  ++    + P F+      K+  + T    +  G   I +
Sbjct: 300 ATLAQEKSDDFGSADNGGELGWIERDVMDPAFEEAAFALKNVGDVTGLVKSDFGYHIIKL 359

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + ++  +     + A +  +    K      E   +L   A   Y
Sbjct: 360 EELKEPVVKPFSDVAAQIKQEMIDQKAVDQFYELQSELEKVAF-EY 404


>gi|170768498|ref|ZP_02902951.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           albertii TW07627]
 gi|170122602|gb|EDS91533.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
           albertii TW07627]
          Length = 428

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/311 (12%), Positives = 107/311 (34%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------L 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  N
Sbjct: 67  RHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + I  +V  N+   +   L  E+ A  Q++ N       +      IP  + 
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITILPQEVEALAQQVGNQNDASTELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                V +    A     +              ++    ++ G+  +    +L   F   
Sbjct: 187 PTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQI--AADIK 315



 Score = 82.8 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 92/287 (32%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q  N       +  L    +   E   S    ++ +  
Sbjct: 143 NNEVRRRITI--LPQEVEALAQQVGNQNDASTELN-LSHILIPLPENPTSDQVNEAESQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V  ARN     +   +    Q   +     +  IQ +     +              
Sbjct: 200 RAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   + + KNI+V E   R +L          Q  V K  + A + +   
Sbjct: 260 RSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARV-KLEQIAADIKSGK 318

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYI 270
                  ++F+         G   +       P F++   + ++   + P  +  G   I
Sbjct: 319 TTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLI 378

Query: 271 AICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R++   + A K          K  +  A ++++ R++A +  
Sbjct: 379 ELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKI 425


>gi|320172859|gb|EFW48091.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella dysenteriae CDC
           74-1112]
          Length = 428

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 38/311 (12%), Positives = 107/311 (34%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------L 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  N
Sbjct: 67  RHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + I  +V  ++   +   L  E+ +  Q++ N       +      IP  + 
Sbjct: 127 TYRNQIRKEMIISEVRNHEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                V +    A     +              ++    ++ G+  +    +L   F   
Sbjct: 187 PTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQI--AADIK 315



 Score = 82.8 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 86/273 (31%), Gaps = 16/273 (5%)

Query: 58  KRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
           + +  L  Q  N       +  L    +   E   S    ++ +     V  ARN     
Sbjct: 155 QEVESLAQQVGNQNDASTELN-LSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFG 213

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------FMLKYGNLEMEIPAN 166
           +   +    Q   +     +  IQ +     +                  G   +++   
Sbjct: 214 KLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDL 273

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
           + + KNI+V E   R +L          Q  V K  + A + +          ++F+   
Sbjct: 274 RGESKNISVTEVHARHILLKPSPIMTDEQARV-KLEQIAADIKSGKTTFAAAAKEFSQDP 332

Query: 227 -HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDL-GGEIA 283
                 G   +       P F++   + ++   + P  +  G   I + D R++   + A
Sbjct: 333 GSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAA 392

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            K          K  +  A ++++ R++A +  
Sbjct: 393 QKDRAYRMLMNRKFSEEAASWMQEQRASAYVKI 425


>gi|320156965|ref|YP_004189344.1| peptidyl-prolyl cis-trans isomerase ppiD [Vibrio vulnificus
           MO6-24/O]
 gi|319932277|gb|ADV87141.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio vulnificus
           MO6-24/O]
          Length = 619

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 42/406 (10%), Positives = 108/406 (26%), Gaps = 92/406 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + SY     S+     +    I  G+     
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYLVSGSSNS-AAKVGNVEIGRGEFEMAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +  +                    K  +  +I + L  Q  E  G+      V  
Sbjct: 60  QNERNRMQSQLGDYFSQLLADPAYVESFRKSVLDRMINDVLLDQHAESLGLRISDAQVRS 119

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                 +  ++   + + + + L + G   + F +Y+  + I   ++             
Sbjct: 120 MILAMPEFQQDGKFNQDVYQATLRRAGYSPDSFAEYMRRELIRSQLLDALQTSEFTLPGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                 DF  K    E +I     + K+   R   ++     + 
Sbjct: 180 VDAEGKLFTQTRDVRTVTLNIRDFADKVTLTEEDIQKYYDENKSRFTRPEQVKVSYIELA 239

Query: 189 DNKLQNQGFV---------------------------------QKRIKDAEESRLRLPKD 215
            + L+ Q  +                                 Q + +   +        
Sbjct: 240 ADSLKQQITISDDEVKQYYQEHLDKYSSEEQRRVAHILIEGDDQAKAQAILDELNAGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               ++ +       + G+  ++    + P F+      K+  + T    +  G   I +
Sbjct: 300 AALAQEKSDDFGSADNGGELGWIERDVMDPAFEEAAFALKNVGDVTGLVKSDFGYHIIKL 359

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + ++  +     + A +  +    K      E   +L   A   Y
Sbjct: 360 EELKEPVVKPFSDVAAQIKQEMIDQKAVDQFYELQSELEKVAF-EY 404


>gi|312112916|ref|YP_004010512.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311218045|gb|ADP69413.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 283

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 38/297 (12%), Positives = 89/297 (29%), Gaps = 47/297 (15%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ---KINGELEKIAVQEL 80
           I     ++++ +    +     +NG  IT+ +I+   A +  +          ++ V+ L
Sbjct: 5   ILLSAAVLAFGAQMAQAAPVARVNGTDITEAEIAFAEAEVGAEIAGLPAESRRRVLVEYL 64

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           +   L   E  K  +    +                                    Y  +
Sbjct: 65  VEAHLFASEAAKDKLDAAKDFEERA------------------------------AYYKL 94

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           +++     +        + + +   ++Q  K     E   R +L              ++
Sbjct: 95  RALRDTFYEKKVRDAITDAQAKAAYDEQIAKLKPEPEVRARHIL-----------VKTKE 143

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN 259
              D  +            +K A      + G   Y  +  +   F++          ++
Sbjct: 144 EAADLVKQLKGGADFNELAKKSADGPSANTGGDLGYFSKGQMVKVFEDTAFALQPGQISD 203

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           P  ++ G   I + DKR+          +  Q   + ++    E V+KLRS+A +  
Sbjct: 204 PVQSEFGWHVIKVEDKRNRPV--PSFDEVKDQIVASLVQNQLRETVQKLRSSAKVEI 258


>gi|332095342|gb|EGJ00365.1| chaperone surA [Shigella boydii 5216-82]
          Length = 428

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 107/311 (34%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------L 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNTAQARQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  N
Sbjct: 67  RHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + I  +V  N+   +   L  E+ +  Q++ N       +      IP  + 
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                V +    A     +              ++    ++ G+  +    +L   F   
Sbjct: 187 PTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHTRHILLKPSPIMTDEQARVK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQI--AADIK 315



 Score = 83.2 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 92/287 (32%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q  N       +  L    +   E   S    ++ +  
Sbjct: 143 NNEVRRRITI--LPQEVESLAQQVGNQNDASTELN-LSHILIPLPENPTSDQVNEAESQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V  ARN     +   +    Q   +     +  IQ +     +              
Sbjct: 200 RAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   + + KNI+V E   R +L          Q  V K  + A + +   
Sbjct: 260 RSGVGFHILKVNDLRGESKNISVTEVHTRHILLKPSPIMTDEQARV-KLEQIAADIKSGK 318

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYI 270
                  ++F+         G   +       P F++   + ++   + P  +  G   I
Sbjct: 319 TTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLI 378

Query: 271 AICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R++   + A K          K  +  A ++++ R++A +  
Sbjct: 379 ELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKI 425


>gi|301019757|ref|ZP_07183903.1| PPIC-type PPIASE domain protein [Escherichia coli MS 69-1]
 gi|331661424|ref|ZP_08362348.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli TA143]
 gi|300399094|gb|EFJ82632.1| PPIC-type PPIASE domain protein [Escherichia coli MS 69-1]
 gi|331061339|gb|EGI33302.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli TA143]
          Length = 428

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 107/311 (34%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------L 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  N
Sbjct: 67  RHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + I  +V  N+   +   L  E+ +  Q++ N       +      IP  + 
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVSNQNDASTELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                V +    A     +              ++    ++ G+  +    +L   F   
Sbjct: 187 PTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQI--AADIK 315



 Score = 82.8 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 92/287 (32%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q  N       +  L    +   E   S    ++ +  
Sbjct: 143 NNEVRRRITI--LPQEVESLAQQVSNQNDASTELN-LSHILIPLPENPTSDQVNEAESQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V  ARN     +   +    Q   +     +  IQ +     +              
Sbjct: 200 RAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   + + KNI+V E   R +L          Q  V K  + A + +   
Sbjct: 260 RSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARV-KLEQIAADIKSGK 318

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYI 270
                  ++F+         G   +       P F++   + ++   + P  +  G   I
Sbjct: 319 TTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLI 378

Query: 271 AICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R++   + A K          K  +  A ++++ R++A +  
Sbjct: 379 ELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKI 425


>gi|262164102|ref|ZP_06031841.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio mimicus VM223]
 gi|262027630|gb|EEY46296.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio mimicus VM223]
          Length = 388

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 29/260 (11%), Positives = 89/260 (34%), Gaps = 4/260 (1%)

Query: 58  KRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
                 +       L +  +++LI++TL++QE E+ G+  D N +N    + A++   + 
Sbjct: 11  NAKQNNQPLPQETVLREQVLEKLIIDTLQQQEAERIGVKIDDNRLNDAIKEIAKSNQQTQ 70

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
           E   S + ++G+    F++ +  +    D        +   L  E+    + +   T   
Sbjct: 71  EQLISSVAQEGLTYPEFREQVRKEMAASDARNALVRRRINILPAEVDTLAELLAQETDAT 130

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
              +     +   + Q++   +                      ++     +  G   ++
Sbjct: 131 VQYKISHIQLRVEEGQDKSEAESLANKLVGELKHGADFAQMAYTYSKGPKALQGGDWGWM 190

Query: 238 LESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNT 293
            + ++   F +    +++ +   P+ +  G   + I D +    +        ++  + T
Sbjct: 191 RKEEMPTIFADQIKMQNKGSVIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPT 250

Query: 294 PTKIEKHEAEYVKKLRSNAI 313
               ++   + + +      
Sbjct: 251 IILSDEGAQKQLNEFVQRIK 270



 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 82/269 (30%), Gaps = 4/269 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++     LL  +       KI+  +L VE  + +   +S        + +      
Sbjct: 111 ILPAEVDTLAELLAQETDATVQYKISHIQLRVEEGQDKSEAESLANKLVGELKHGADFAQ 170

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                S    +      G         +    I      +        +   I       
Sbjct: 171 MAYTYSKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSVIGPFRSGVGFHILKIDDVK 230

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC-NKLEKFASKI-HD 228
              TV    +      I    + +    QK++ +  +             ++++      
Sbjct: 231 GLETVAVTEVNARHILIKPTIILSDEGAQKQLNEFVQRIKNGEATFGELAQQYSQDPGSA 290

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKA 286
              G+  Y       P+F++ ++       + P+ T  G   + + D+R++   + ALK 
Sbjct: 291 AQKGELGYQTPDLYVPEFKHQIETLPVGQISEPFQTVHGWHIVEVLDRREVDRTDSALKN 350

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                    K  +  + ++++LR++A + 
Sbjct: 351 KAYRILFNRKFNEEASAWLQELRASAFVE 379


>gi|153831363|ref|ZP_01984030.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae 623-39]
 gi|229529056|ref|ZP_04418446.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae 12129(1)]
 gi|148873155|gb|EDL71290.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae 623-39]
 gi|229332830|gb|EEN98316.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae 12129(1)]
          Length = 619

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/403 (7%), Positives = 91/403 (22%), Gaps = 91/403 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + +Y   +  +     +    I+ GD  +  
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYL-ISGGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                       K  +  ++ + L +Q     G+      V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119

Query: 105 ---FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                 Q        +  + + L + G     + +YL    +   ++             
Sbjct: 120 LILEIPQFQSQGVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLAGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL---- 184
                                 DF  K    + EI    +       R   ++       
Sbjct: 180 VNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVELS 239

Query: 185 ---------------FSIPDNKLQNQGFVQKRIKDAE--------------ESRLRLPKD 215
                                 L      ++R                   +        
Sbjct: 240 ADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               ++ +  +      G   ++    + P F+        +   +    +  G   I +
Sbjct: 300 ATLAKEKSQDLGSAAEGGSLGWIEPDTMDPAFEAAAFALTEKGQVSGLVKSDFGYHIIRL 359

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            D +   +     ++  +  +    +          +L   A 
Sbjct: 360 DDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAF 402


>gi|333010545|gb|EGK29978.1| chaperone surA [Shigella flexneri VA-6]
          Length = 428

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 107/311 (34%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------L 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  N
Sbjct: 67  RHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + I  +V  N+   +   L  E+ +  Q++ N       +      IP  + 
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                V +    A     +              ++    ++ G+  +    +L   F   
Sbjct: 187 PTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQI--AADIK 315



 Score = 83.6 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 92/287 (32%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q  N       +  L    +   E   S    ++ +  
Sbjct: 143 NNEVRRRITI--LPQEVESLAQQVGNQNDASTELN-LSHILIPLPENPTSDQVNEAESQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V  ARN     +   +    Q   +     +  IQ +     +              
Sbjct: 200 RAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   + + KNI+V E   R +L          Q  V K  + A + +   
Sbjct: 260 RSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARV-KLEQIAADIKSGK 318

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYI 270
                  ++F+         G   +       P F++   + ++   + P  +  G   I
Sbjct: 319 TTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLI 378

Query: 271 AICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R++   + A K          K  +  A ++++ R+NA +  
Sbjct: 379 ELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRANAYVKI 425


>gi|108803753|ref|YP_643690.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rubrobacter
           xylanophilus DSM 9941]
 gi|108764996|gb|ABG03878.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rubrobacter
           xylanophilus DSM 9941]
          Length = 354

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 38/297 (12%), Positives = 82/297 (27%), Gaps = 29/297 (9%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEK----------IAVQELIVETLKKQEIEK 92
                G  +T G + +++ LL  Q   GE+              + +L+ + + +    +
Sbjct: 52  VAVFEGGEVTQGQVQEQLDLLGRQSGLGEITPDSPQYQSAIAQIMPQLVTQEIAQAYARE 111

Query: 93  SGITFDSNTVNYFFVQHARNTGLS---------AEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            GIT     V     +                  E+      +Q        +    + +
Sbjct: 112 HGITVTEREVEREIGRIKDQLVRQARAQGQDIGREEAFRRALEQAGITEAQLREQIREQL 171

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
               V+          E E+    ++ +         R V   + +   + +    KR  
Sbjct: 172 PVQKVQERVAGDARPTEEEVRDYYEENREAQFTTPAQRCVRHILFNPDQRERAEEVKRRL 231

Query: 204 DAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPY 261
           +                +++         G    +   +  P F+       +     P 
Sbjct: 232 E------EGADFAELAREYSQDPGSREKGGDLGCIGRGETVPNFEEAAFGAEEGEVVGPV 285

Query: 262 VTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            TQ G   I + D R    E    ++  +  Q   T   +    +V++      I Y
Sbjct: 286 KTQFGYHVIKVYDVRRESTEPLSEVEDRIREQLAATAQAEKFQRWVERQEELRDIRY 342


>gi|254286721|ref|ZP_04961675.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae AM-19226]
 gi|150423148|gb|EDN15095.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae AM-19226]
          Length = 619

 Score =  102 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 32/403 (7%), Positives = 91/403 (22%), Gaps = 91/403 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + +Y   +  +     +    I+ GD  +  
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYL-ISGGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                       K  +  ++ + L +Q     G+      V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119

Query: 105 ---FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                 Q        +  + + L + G     + +YL    +   ++             
Sbjct: 120 LILEIPQFQSQGVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLSGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL---- 184
                                 DF  K    + EI    +       R   ++       
Sbjct: 180 VNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIEQYYKTNTERFTRPEQVKVSYVELS 239

Query: 185 ---------------FSIPDNKLQNQGFVQKRIKDAE--------------ESRLRLPKD 215
                                 L      ++R                   +        
Sbjct: 240 ADGLKAKVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               ++ +  +      G   ++    + P F+        +   +    +  G   I +
Sbjct: 300 ATLAKEKSQDLGSAAEGGSLGWIEPDTMDPAFEAAAFALTEKGQVSGLVKSDFGYHIIRL 359

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            D +   +     ++  +  +    +          +L   A 
Sbjct: 360 DDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAF 402


>gi|254417887|ref|ZP_05031611.1| SurA N-terminal domain family [Brevundimonas sp. BAL3]
 gi|196184064|gb|EDX79040.1| SurA N-terminal domain family [Brevundimonas sp. BAL3]
          Length = 393

 Score =  102 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 111/288 (38%), Gaps = 16/288 (5%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQ-------KINGELEKIAVQELIVETLKKQEI 90
           M+  I  T+N ++IT  D+ +++ +L          +    +++ A+  LI + LK QEI
Sbjct: 1   MADGIVATVNDKIITGFDLRQQMLMLIASSQVQPTEQNLPAIQQAALNRLIEQRLKAQEI 60

Query: 91  EKSGI-TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
            K          ++    Q AR  G++   +  FL + GI  N F++ L  +  W  +V 
Sbjct: 61  TKFESLKVTDQEIDEEIAQMARQAGVTPAAYMEFLQQGGIQPNAFRESLRTEIGWGQLVP 120

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
             F  +     +++    +++ +   +   +   ++         +  +    +  ++  
Sbjct: 121 GRFNSRARPSTLQVDQEVRRLNDAAAQPQYLIGEIYIEAARVGGQEAAMNGARQLVQQII 180

Query: 210 LRLPKDCNKLEKFASKIHDVS--IGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKG 266
            +        ++F+S     +   G A ++++  + P  Q +  +      +NP     G
Sbjct: 181 -QGAPFQAVAQQFSSAPSASARVPGDAGWVVKGTVQPALQTIFDQLQPGQLSNPIAVDGG 239

Query: 267 VEYIAICDKRD-LGGEIALKAYLSAQNTPTKIE---KHEAEYVKKLRS 310
           V  I + DKRD     +     L  +   T  E         ++ LR 
Sbjct: 240 VYIIYMRDKRDGAATSLVSLRQLMVELPETASEADLAAATRTLEGLRQ 287



 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/267 (13%), Positives = 78/267 (29%), Gaps = 12/267 (4%)

Query: 55  DISKRIALLKLQKINGELEKIAVQELIVETLKKQEI---EKSGITFDSNTVNYFFVQHAR 111
            + + +  L       +        LI E   +      +++ +      V         
Sbjct: 133 QVDQEVRRLNDAAAQPQY-------LIGEIYIEAARVGGQEAAMNGARQLVQQIIQGAPF 185

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY-GNLEMEIPANKQKM 170
                    +     +  GD  +     +Q     +       +    + ++       M
Sbjct: 186 QAVAQQFSSAPSASARVPGDAGWVVKGTVQPALQTIFDQLQPGQLSNPIAVDGGVYIIYM 245

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS 230
           ++           L  +     +                LR   +C+ +   A     V 
Sbjct: 246 RDKRDGAATSLVSLRQLMVELPETASEADLAAATRTLEGLRQGLNCDNILSQARATQGVI 305

Query: 231 IGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS 289
                    ++L PQFQ   +     + + P  T  G+  +A+C +R  G E   +  + 
Sbjct: 306 GADLGESDVANLAPQFQQFARTGEIGSVSTPIRTPLGLHLVAVCGRRVGGPEAPNRQQVE 365

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            +     +   E  Y++ LRS+A+I +
Sbjct: 366 GRLRSQNLAVLERRYLRDLRSDALIEF 392


>gi|300821942|ref|ZP_07102086.1| PPIC-type PPIASE domain protein [Escherichia coli MS 119-7]
 gi|300905457|ref|ZP_07123223.1| PPIC-type PPIASE domain protein [Escherichia coli MS 84-1]
 gi|300923997|ref|ZP_07139998.1| PPIC-type PPIASE domain protein [Escherichia coli MS 182-1]
 gi|301305055|ref|ZP_07211156.1| PPIC-type PPIASE domain protein [Escherichia coli MS 124-1]
 gi|301330176|ref|ZP_07222838.1| PPIC-type PPIASE domain protein [Escherichia coli MS 78-1]
 gi|331666290|ref|ZP_08367171.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli TA271]
 gi|331680626|ref|ZP_08381285.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli H591]
 gi|300402673|gb|EFJ86211.1| PPIC-type PPIASE domain protein [Escherichia coli MS 84-1]
 gi|300419766|gb|EFK03077.1| PPIC-type PPIASE domain protein [Escherichia coli MS 182-1]
 gi|300525542|gb|EFK46611.1| PPIC-type PPIASE domain protein [Escherichia coli MS 119-7]
 gi|300839662|gb|EFK67422.1| PPIC-type PPIASE domain protein [Escherichia coli MS 124-1]
 gi|300843816|gb|EFK71576.1| PPIC-type PPIASE domain protein [Escherichia coli MS 78-1]
 gi|315255671|gb|EFU35639.1| PPIC-type PPIASE domain protein [Escherichia coli MS 85-1]
 gi|331066501|gb|EGI38378.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli TA271]
 gi|331072089|gb|EGI43425.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli H591]
          Length = 428

 Score =  102 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 107/311 (34%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------L 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  N
Sbjct: 67  RHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + I  +V  N+   +   L  E+ +  Q++ N       +      IP  + 
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                V +    A     +              ++    ++ G+  +    +L   F   
Sbjct: 187 PTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQI--AADIK 315



 Score = 82.4 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 92/287 (32%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q  N       +  L    +   E   S    ++ +  
Sbjct: 143 NNEVRRRITI--LPQEVESLAQQVGNQNDASTELN-LSHILIPLPENPTSDQVNEAESQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V  ARN     +   +    Q   +     +  IQ +     +              
Sbjct: 200 RAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   + + KNI+V E   R +L          Q  V K  + A + +   
Sbjct: 260 RSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARV-KLEQIAADIKSGK 318

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYI 270
                  ++F+         G   +       P F++   + ++   + P  +  G   I
Sbjct: 319 TTFAAAAKEFSQDPGSANQGGDLGWATADIFDPAFRDALTRLNKGQMSAPVHSSFGWHLI 378

Query: 271 AICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R++   + A K          K  +  A ++++ R++A +  
Sbjct: 379 ELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKI 425


>gi|227113469|ref|ZP_03827125.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 626

 Score =  102 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 38/398 (9%), Positives = 110/398 (27%), Gaps = 87/398 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ ++ +  +    ++  F +  +  Y            +NG+ IT   + + +
Sbjct: 1   MMDNLRTAANNVVLKIILALIIASFVLTGVGDYLIGGSGDY-AAKVNGQEITRAQLEQAV 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + ++                   +L + A+ +LI ETL  Q   K G+      +  
Sbjct: 60  QNERSRQQETLGENFSLLASNDGYMQQLRRQALSQLIDETLLDQYANKLGLNISDEQIKQ 119

Query: 105 FFVQ---HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK----------ND 151
                     +     E +   + + G+  + + Q L  Q     +++           +
Sbjct: 120 AIFDVPAFQTDNRFDNEKYLDQVRRLGVTPDMYAQMLRKQLTSQQLIRGFGNTAFLLPQE 179

Query: 152 FMLKYG-----------------------NLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                          + EI +   + K   +     +    ++ 
Sbjct: 180 IDNLVKLAAQDRVVRVATIDIAAKAKAQTVADDEIQSYYDQNKGNFIAPEEFKVSYITLD 239

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA------------------------- 223
              + +   V     +    + +      + +KF+                         
Sbjct: 240 AASIMDGVKVDDAAINDFYEQNKSGYSQPERKKFSVIQVKNEADAASVLDALKQGGDFAT 299

Query: 224 -------SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
                    I   + G   ++ E+ +  + +      +   +    +  G   + + D +
Sbjct: 300 LAKEKSTDVISRRNGGDLGWMDENSMIDELKQAKLTEKGQVSEAIKSSVGYLIVRLDDVQ 359

Query: 277 DLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
               +    ++A ++ +    K +       +K+   A
Sbjct: 360 PQQVKPLSEVRAEIAEKVKHEKAQDGYYALQQKVSEAA 397


>gi|15641920|ref|NP_231552.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121591616|ref|ZP_01678864.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae 2740-80]
 gi|121727851|ref|ZP_01680918.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae V52]
 gi|147674490|ref|YP_001217451.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae O395]
 gi|153820108|ref|ZP_01972775.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae NCTC 8457]
 gi|153823840|ref|ZP_01976507.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae B33]
 gi|227082048|ref|YP_002810599.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae M66-2]
 gi|229507986|ref|ZP_04397491.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae BX
           330286]
 gi|229511777|ref|ZP_04401256.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae B33]
 gi|229518914|ref|ZP_04408357.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae RC9]
 gi|229607532|ref|YP_002878180.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae MJ-1236]
 gi|254849006|ref|ZP_05238356.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae MO10]
 gi|255745323|ref|ZP_05419272.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholera CIRS 101]
 gi|262156047|ref|ZP_06029167.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae INDRE
           91/1]
 gi|262167880|ref|ZP_06035580.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae RC27]
 gi|298498044|ref|ZP_07007851.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae MAK 757]
 gi|9656453|gb|AAF95066.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121546529|gb|EAX56737.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae 2740-80]
 gi|121629887|gb|EAX62301.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae V52]
 gi|126509350|gb|EAZ71944.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae NCTC 8457]
 gi|126518637|gb|EAZ75860.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae B33]
 gi|146316373|gb|ABQ20912.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae O395]
 gi|227009936|gb|ACP06148.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae M66-2]
 gi|227013816|gb|ACP10026.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae O395]
 gi|229343603|gb|EEO08578.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae RC9]
 gi|229351742|gb|EEO16683.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae B33]
 gi|229355491|gb|EEO20412.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae BX
           330286]
 gi|229370187|gb|ACQ60610.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae MJ-1236]
 gi|254844711|gb|EET23125.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae MO10]
 gi|255737153|gb|EET92549.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholera CIRS 101]
 gi|262023607|gb|EEY42308.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae RC27]
 gi|262030225|gb|EEY48869.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae INDRE
           91/1]
 gi|297542377|gb|EFH78427.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae MAK 757]
          Length = 619

 Score =  102 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 32/403 (7%), Positives = 91/403 (22%), Gaps = 91/403 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + +Y   +  +     +    I+ GD  +  
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYL-ISGGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                       K  +  ++ + L +Q     G+      V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119

Query: 105 ---FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                 Q        +  + + L + G     + +YL    +   ++             
Sbjct: 120 LILEIPQFQSQGVFDSTAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLAGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL---- 184
                                 DF  K    + EI    +       R   ++       
Sbjct: 180 VNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVELS 239

Query: 185 ---------------FSIPDNKLQNQGFVQKRIKDAE--------------ESRLRLPKD 215
                                 L      ++R                   +        
Sbjct: 240 ADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               ++ +  +      G   ++    + P F+        +   +    +  G   I +
Sbjct: 300 ATLAKEKSQDLGSAAEGGSLGWIEPDTMDPAFEAAAFALTEKGQVSGLVKSDFGYHIIRL 359

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            D +   +     ++  +  +    +          +L   A 
Sbjct: 360 DDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAF 402


>gi|237704199|ref|ZP_04534680.1| surA [Escherichia sp. 3_2_53FAA]
 gi|226902111|gb|EEH88370.1| surA [Escherichia sp. 3_2_53FAA]
          Length = 428

 Score =  102 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 107/311 (34%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------L 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  N
Sbjct: 67  RHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + I  +V  N+   +   L  E+ +  Q++ N       +      IP  + 
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                V +    A     +              ++    ++ G+  +    +L   F   
Sbjct: 187 PTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQI--AADIK 315



 Score = 82.8 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 92/287 (32%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q  N       +  L    +   E   S    ++ +  
Sbjct: 143 NNEVRRRITI--LPQEVESLAQQVGNQNDASTELN-LSHILIPLPENPTSDQVNEAESQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V  ARN     +   +    Q   +     +  IQ +     +              
Sbjct: 200 RAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   + + KNI+V E   R +L          Q  V K  + A + +   
Sbjct: 260 RSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARV-KLEQIAADIKSGK 318

Query: 213 PKDCNKLEKFASKIH-DVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYI 270
                  ++F+         G   +       P F++   + ++   + P  +  G   I
Sbjct: 319 TTFAAAAKEFSQDPSSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLI 378

Query: 271 AICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R++   + A K          K  +  A ++++ R++A +  
Sbjct: 379 ELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKI 425


>gi|145590048|ref|YP_001156645.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048454|gb|ABP35081.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 484

 Score =  102 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 47/311 (15%), Positives = 89/311 (28%), Gaps = 32/311 (10%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMS-----------SRIRTTINGEVITDGDISKRIA 61
           IKL+   F         IVS +  + +             +   +N   IT  DI  RIA
Sbjct: 8   IKLMNFIFFFAAVLFAGIVSAQDASKTTVATDGKVRNIDGVAAVVNTGYITRKDIDDRIA 67

Query: 62  LLKLQKIN----GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
           +LK Q         L K+ ++ LI+E ++ Q  E+ G    S  ++      A    L+ 
Sbjct: 68  VLKKQGTKLPEGEALRKVILERLILEKIQLQNAEQEGFYVSSKELDKIIADTAAKNKLTF 127

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT--- 174
            +  + ++        +KQ L  + I     + +   K    + EI     +        
Sbjct: 128 VELKAKIEASSTSFEKYKQQLREEVIVSRYREREVDAKIKISDAEIDNFISERNRAMLSG 187

Query: 175 ------------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                           + +  +          Q   +K+                     
Sbjct: 188 VTRPSPSANGGPEEIDVAQIFIPVDSGAGAGAQADAKKKADLLLREAKGDVDFLQLGAMA 247

Query: 223 ASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDKRDLGG 280
           A     +   +  Y     L   F + +              +  G   + + D+R +  
Sbjct: 248 AKDNPQIKFQELGYRPPDRLPQLFYEAVRNTGSGQVAGAVVKSPAGYHVLKVLDRRSMAA 307

Query: 281 EIALKAYLSAQ 291
                A  + Q
Sbjct: 308 GSPPPAQAAPQ 318



 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 54/139 (38%), Gaps = 2/139 (1%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
               +       L +Q   ++     ++ R +     +  +K++      + G   ++  
Sbjct: 334 NARHILLRNRPGLSDQDAERRLQGYRDQVRAKTADFGDLAKKYSEDGSASNGGNLGWMGP 393

Query: 240 SDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKI 297
            DL P+F+  + K      +NP  T+ G   I + ++R+    +  +     A     K 
Sbjct: 394 GDLVPEFELAMNKLQIGEVSNPVKTEFGWHLIQVIERREAQLTVEKQREFARAAIRSRKF 453

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           E+   +++++LR  A +  
Sbjct: 454 EQAYQDWMRELRDTATVKI 472


>gi|187733861|ref|YP_001878866.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella boydii CDC
           3083-94]
 gi|187430853|gb|ACD10127.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Shigella boydii
           CDC 3083-94]
          Length = 428

 Score =  102 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 107/311 (34%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------L 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  N
Sbjct: 67  RHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + I  +V  N+   +   L  E+ +  Q++ N       +      IP  + 
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                V +    A     +              ++    ++ G+  +    +L   F   
Sbjct: 187 PTSDQVNEAESQARAIVDQVRNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQI--AADIK 315



 Score = 81.6 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 91/287 (31%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q  N       +  L    +   E   S    ++ +  
Sbjct: 143 NNEVRRRITI--LPQEVESLAQQVGNQNDASTELN-LSHILIPLPENPTSDQVNEAESQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V   RN     +   +    Q   +     +  IQ +     +              
Sbjct: 200 RAIVDQVRNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   + + KNI+V E   R +L          Q  V K  + A + +   
Sbjct: 260 RSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARV-KLEQIAADIKSGK 318

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYI 270
                  ++F+         G   +       P F++   + ++   + P  +  G   I
Sbjct: 319 TTFAAAAKEFSQDPDSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLI 378

Query: 271 AICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R++   + A K          K  +  A ++++ R++A +  
Sbjct: 379 ELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKI 425


>gi|229515304|ref|ZP_04404764.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae TMA 21]
 gi|229348009|gb|EEO12968.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae TMA 21]
          Length = 619

 Score =  102 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 32/403 (7%), Positives = 91/403 (22%), Gaps = 91/403 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + +Y   +  +     +    I+ GD  +  
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYL-ISGGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                       K  +  ++ + L +Q     G+      V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119

Query: 105 ---FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                 Q        +  + + L + G     + +YL    +   ++             
Sbjct: 120 LILEIPQFQSQGVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLSGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL---- 184
                                 DF  K    + EI    +       R   ++       
Sbjct: 180 VNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVELS 239

Query: 185 ---------------FSIPDNKLQNQGFVQKRIKDAE--------------ESRLRLPKD 215
                                 L      ++R                   +        
Sbjct: 240 ADGLKAQVSVDDEAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               ++ +  +      G   ++    + P F+        +   +    +  G   I +
Sbjct: 300 ATLAKEKSQDLGSAAEGGSLGWIEPDTMDPAFEAAAFALTEKGQVSGLVKSDFGYHIIRL 359

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            D +   +     ++  +  +    +          +L   A 
Sbjct: 360 DDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAF 402


>gi|77464749|ref|YP_354253.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides 2.4.1]
 gi|77389167|gb|ABA80352.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides 2.4.1]
          Length = 286

 Score =  102 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 77/281 (27%), Gaps = 50/281 (17%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKIN---GELEKIAVQELIVETLKKQEIEKSG 94
            +  +  T+NG+ IT G +    A L  Q  +     L K  +++LI +           
Sbjct: 33  TADTVVATVNGQDITLGHMIALRAGLPDQYQSLPDDALFKGILEQLIQQAALA------- 85

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
                                      S        D    Q      +    ++     
Sbjct: 86  --------------------------QSIEGSVTKRDQLSLQNEERGFLSAVAMRRVVEG 119

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
              +  ++   + +        EY    +L S  D   + +  +                
Sbjct: 120 AVTDEALQAAYDARFADAAPQTEYNASHILVSSEDEAKKLKEEID-----------GGAD 168

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAIC 273
                ++ +S     + G   +     +   F++ + K        P  TQ G   + + 
Sbjct: 169 FATLAKEHSSDGAAANGGSLGWFGLGMMVKPFEDAVVKMKPGEVVGPIQTQFGWHLVKLN 228

Query: 274 DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           + R    E      +  +      ++  A ++ ++ + A I
Sbjct: 229 ETR--IAEKPSLDDMRDELAGQIEQEAVARHIDEVTAKAEI 267


>gi|300816090|ref|ZP_07096313.1| PPIC-type PPIASE domain protein [Escherichia coli MS 107-1]
 gi|300531297|gb|EFK52359.1| PPIC-type PPIASE domain protein [Escherichia coli MS 107-1]
          Length = 428

 Score =  102 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 107/311 (34%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  N
Sbjct: 67  RHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + I  +V  N+   +   L  E+ +  Q++ N       +      IP  + 
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                V +    A     +              ++    ++ G+  +    +L   F   
Sbjct: 187 PTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   ++     
Sbjct: 247 LSAAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQI--AADIK 315



 Score = 82.0 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 92/287 (32%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q  N       +  L    +   E   S    ++ +  
Sbjct: 143 NNEVRRRITI--LPQEVESLAQQVGNQNDASTELN-LSHILIPLPENPTSDQVNEAESQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V  ARN     +   +    Q   +     +  IQ +     +              
Sbjct: 200 RAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSAAKKGDIVGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   + + KNI+V E   R +L          Q  V K  + A + +   
Sbjct: 260 RSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARV-KLEQIAADIKSGK 318

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYI 270
                  ++F+         G   +       P F++   + ++   + P  +  G   I
Sbjct: 319 TTFAAAAKEFSQDPGSANQGGDLGWATADIFDPAFRDALTRLNKGQMSAPVHSSFGWHLI 378

Query: 271 AICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R++   + A K          K  +  A ++++ R++A +  
Sbjct: 379 ELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKI 425


>gi|163746451|ref|ZP_02153809.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161380336|gb|EDQ04747.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 412

 Score =  102 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 91/268 (33%), Gaps = 5/268 (1%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELI 81
             +   + I    +          +N E IT  ++ +R   ++L    G      +  LI
Sbjct: 17  AALALALVIGQSAAAQNLFAPVARVNDEAITGYEVQQRQRFMQLIGAPGTDSNSVIDSLI 76

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
            + L+ Q +E++G+    + +     + A    LS E+F   L +  I +  F+ ++ I 
Sbjct: 77  EDRLRGQILEQAGLEVTPDGIRAGMTEFAGRADLSTEEFLKVLGQAQISEETFRDFIVIS 136

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
           + W D+++  +  +    + E+       +       L+  ++   P         + +R
Sbjct: 137 AAWRDLIRARYNGRVNITDEEVERALGSSRGNNGLRVLLSEIIIPAPPQNADQVNALAER 196

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNP 260
                       +  +   ++++       GK  +    +L    + +L   +    T P
Sbjct: 197 ----IAQSSSEAEFSSYASQYSATASRERGGKMPWTPLENLPVSLRPILLALAPGEVTAP 252

Query: 261 YVTQKGVEYIAICDKRDLGGEIALKAYL 288
                 V    +    + G      + +
Sbjct: 253 LPIPNAVALFQLRGIEETGKPSVEYSQI 280


>gi|302343059|ref|YP_003807588.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfarculus
           baarsii DSM 2075]
 gi|301639672|gb|ADK84994.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfarculus
           baarsii DSM 2075]
          Length = 317

 Score =  102 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 39/307 (12%), Positives = 100/307 (32%), Gaps = 20/307 (6%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--- 71
                 +L++     ++     + S+     ++ E I+    +++ A + L         
Sbjct: 8   FFALACLLLVSTAAALLVACDRSGSTAWVAAVDDEKISLHQFNQKAAFMGLGADAKSLDA 67

Query: 72  -LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
            L K  + E+I   +  ++  K G+      ++    +     G+ A  F   +  +G+ 
Sbjct: 68  GLRKAVLDEMIQRLVILRQAAKLGVELSDQELDSEEERIHH--GMDAAAFREGMLARGMD 125

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
              ++  LA   +    +      +    + EI A   + K+   R   I  +   +PD 
Sbjct: 126 YQDWRDELARDLLVRKTIDLVLTPRISVDQSEIVAYYDEHKDQFSRPEQILALHLVLPD- 184

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH-PQFQNL 249
                   +K   +      R        ++    +     G+  +L    +     + +
Sbjct: 185 --------KKMADELVARMDRGQDMLAAAKEMGVALGSD--GRPDWLGRGHMPGKLEKAV 234

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA--YLSAQNTPTKIEKHEAEYVKK 307
                     P+ +  G   + + +KR        +A   +       K +     ++++
Sbjct: 235 FAARPGRPAGPFHSDYGYHVVWVIEKRPAMVLPLAEAAGRIQDALAKEKKDALTVGWLEE 294

Query: 308 LRSNAII 314
           L+S + I
Sbjct: 295 LKSESKI 301


>gi|83942078|ref|ZP_00954540.1| PPIC-type PPIASE domain protein [Sulfitobacter sp. EE-36]
 gi|83847898|gb|EAP85773.1| PPIC-type PPIASE domain protein [Sulfitobacter sp. EE-36]
          Length = 292

 Score =  102 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/318 (11%), Positives = 83/318 (26%), Gaps = 58/318 (18%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSS--------RIRTTINGEVITD-GDISKR 59
           +   +  L  + V     +  +    +   +          +  T+NG  IT    I  R
Sbjct: 1   MQKPLTFLAPFVVAASLALPAVAQDDTAEKTDAQTDVTAETVVATVNGTDITIGSMIIAR 60

Query: 60  IAL--LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
             L     Q     L K  + +L+ +T                                 
Sbjct: 61  ATLPEQYQQLPPEVLFKGILDQLVQQTAL------------------------------- 89

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
                F  +         +    Q I  +V++          E++   ++         E
Sbjct: 90  --SQDFDGEVPKRIEMALENERRQLIAGEVIEKAMAQDVTEEELQAAYDEAYADAEPTEE 147

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
           +    +L              ++  +  ++            ++ ++     + G   + 
Sbjct: 148 FSASHIL-----------VETEEEAQAVKKELDEGADFAELAKEKSTGPSGPAGGTLGWF 196

Query: 238 LESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK 296
               + P F+  + +      + P  TQ G   I + DKR    E      +  +     
Sbjct: 197 GPGMMVPAFETAVAELEVGAVSEPVETQFGWHVIKLDDKRQK--EAPKLEDVKDELETQV 254

Query: 297 IEKHEAEYVKKLRSNAII 314
            +      ++K    A +
Sbjct: 255 RQVKAQTLIEKTTEAADV 272


>gi|156973716|ref|YP_001444623.1| peptidyl-prolyl cis-trans isomerse [Vibrio harveyi ATCC BAA-1116]
 gi|156525310|gb|ABU70396.1| hypothetical protein VIBHAR_01421 [Vibrio harveyi ATCC BAA-1116]
          Length = 619

 Score =  102 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/406 (10%), Positives = 104/406 (25%), Gaps = 92/406 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + SY     ++     +    I  G+     
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYI-VGGNNNAAAKVGNTEIARGEFEMAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                       K  +  +I + L  Q+ E  G+      V  
Sbjct: 60  QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDAQVRS 119

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN----------- 150
                 Q   N     E + + L + G   + F +Y+  + +   ++             
Sbjct: 120 MILDMPQFQSNGKFDQEIYQASLRRAGFSPDSFAEYMRRELVREQLLNALQTSEFTLPGE 179

Query: 151 ----------------------DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                 +F  K    + EI    +    +  R   ++     + 
Sbjct: 180 VQSEGKLFTQTRDVRTITIDLNEFAKKVDLTDEEIQDYYKANPEMFTRPEQVKVAYIELS 239

Query: 189 DNKLQNQGFV---------------------------------QKRIKDAEESRLRLPKD 215
            ++L+ Q  +                                 + + +   +        
Sbjct: 240 ADELKKQIQISDEDVKKYYDEHLDKYSTEEQRRVAHILVEGDDEAKAQAILDELNGGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               E+ ++      + G   ++    + P F+      K+  + T    +  G   I +
Sbjct: 300 AKLAEEKSNDFGSAENGGDLGWIERDVMDPAFEEAAFALKNPGDITGLVKSDFGYHIIKL 359

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + +         + A +  +    K      E   +L   A   Y
Sbjct: 360 EELKGAVAKPFSEVAAEIKQEMVDQKAVDQFYELQNELEKVAF-EY 404


>gi|254498443|ref|ZP_05111173.1| peptidyl-prolyl cis-trans isomerase D (SurA) [Legionella
           drancourtii LLAP12]
 gi|254352330|gb|EET11135.1| peptidyl-prolyl cis-trans isomerase D (SurA) [Legionella
           drancourtii LLAP12]
          Length = 421

 Score =  102 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/304 (11%), Positives = 99/304 (32%), Gaps = 18/304 (5%)

Query: 26  CIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGELEKIAV 77
            +  +   ++  +  ++   +N  VIT  ++ K++A+ K Q          +  + K  +
Sbjct: 1   MLAAVGVTQAKQLLDKVVAVVNNSVITASELDKQVAMAKKQLLAQRIQLPPDSVVRKQVL 60

Query: 78  QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY 137
           Q LI   L+ Q  ++ GI+ D   +     + A     +       + KQG+G N +++ 
Sbjct: 61  QHLIDVDLQLQMAKQHGISVDDTELTQAIERIAAANHATLSQMREEIVKQGMGWNEYREN 120

Query: 138 LAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL-----IRTVLFSIPDNKL 192
           +  + I  ++ +            ++    +   ++ V            V+    +   
Sbjct: 121 IRKEMILSNLQQKAVGHDVMITNEQVEQYLKTEGDLPVDRTHLTYHLQNIVIPLNDEPTP 180

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLK 251
                 Q        S  +         + ++    +  G       ++L   F + ++ 
Sbjct: 181 AQMKKAQAIAAQILISIKKGADFNRVAVEKSTGDFALDSGDLGERHLAELPELFAKEVVN 240

Query: 252 KSQNNTTNPYVTQKGVEYIAIC----DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
                   P     G++ I +     +++     +    ++  +     + +   + V  
Sbjct: 241 MKVGQVAGPLRAGNGLQLIKLVAIGGEQQQHMVTLTHVRHILLKPDANMLPEDVKKQVNN 300

Query: 308 LRSN 311
           +   
Sbjct: 301 IYQQ 304



 Score = 91.7 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/278 (10%), Positives = 81/278 (29%), Gaps = 9/278 (3%)

Query: 48  GEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF-F 106
             +IT+  + + +       ++       +Q +++    +    +               
Sbjct: 138 DVMITNEQVEQYLKTEGDLPVDRTHLTYHLQNIVIPLNDEPTPAQMKKAQAIAAQILISI 197

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML-----KYGNLEM 161
            + A    ++ E  +                   +    +VV           + GN   
Sbjct: 198 KKGADFNRVAVEKSTGDFALDSGDLGERHLAELPELFAKEVVNMKVGQVAGPLRAGNGLQ 257

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
            I       +       L       +  +       V+K++ +  +            ++
Sbjct: 258 LIKLVAIGGEQQQHMVTLTHVRHILLKPDANMLPEDVKKQVNNIYQQLKAGKDFAKMAKQ 317

Query: 222 FASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG 279
           ++      V  G   ++   +L P+F+  + K   N  + P  TQ G   I +  ++   
Sbjct: 318 YSLDPGSAVKGGDLGWVTPGELVPEFEKTMNKLALNQVSQPVKTQFGWHLIEVLGRKQQD 377

Query: 280 GEIA-LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
              A  K  +       K  +    + + +R++A ++ 
Sbjct: 378 DSTAFKKQQIRQFLHQRKFAEAVQNWQQHIRTDAYVNI 415


>gi|253687447|ref|YP_003016637.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251754025|gb|ACT12101.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 626

 Score =  102 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/398 (8%), Positives = 109/398 (27%), Gaps = 87/398 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ ++ +  +    ++  F +  +  Y            +NG+ IT   + + +
Sbjct: 1   MMDNLRTAANNVVLKIILALIIASFVLTGVGDYLIGGSGDY-AAKVNGQEITRAQLEQAV 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + ++                   +L + A+ +LI ETL  Q   K G+      +  
Sbjct: 60  QNERSRQQEALGENFSLLASNDGYMQQLRRQALSQLIDETLLDQYANKLGLNISDEQIKQ 119

Query: 105 FFVQ---HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK----------ND 151
                     N     E +   + + G+  + + Q L  Q     +++           +
Sbjct: 120 AIFDVPAFQTNNRFDNEKYLDQVRRLGVTPDMYAQMLRKQLTSQQLIRGFGNSSFLLPQE 179

Query: 152 FMLKYG-----------------------NLEMEIPANKQKMKNITVREYLIRTV----- 183
                                          + E+ +   + K   +     +       
Sbjct: 180 IDNLVKLAAQDRVVRVATIDIAAKAKAQTVADDEVQSYYDQNKGNFIAPEEFKVSYITLD 239

Query: 184 --------------LFSIPDNKLQNQGFVQKRIKDAEESRLR------------LPKDCN 217
                         +    +    +    +++     + +                    
Sbjct: 240 AASIMDGVKVDDAAINDFYEQNKNDYSQPERKKFSVIQVKNEADATSVLDALKQGGDFAT 299

Query: 218 KLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
             ++ ++  I   + G   ++ E+ +  + +      +   +    +  G   + + D +
Sbjct: 300 LAKEKSTDIISRRNGGDLGWMDENSMIDELKQAKLTEKGQISAAIKSSVGYLIVRLDDVQ 359

Query: 277 DLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
               +    ++A ++ +    K +       +K+   A
Sbjct: 360 PQQIKPLSEVRAEIAEKVKHEKAQDGYYALQQKVSEAA 397


>gi|319778501|ref|YP_004129414.1| Survival protein SurA precursor [Taylorella equigenitalis MCE9]
 gi|317108525|gb|ADU91271.1| Survival protein SurA precursor [Taylorella equigenitalis MCE9]
          Length = 491

 Score =  102 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/317 (13%), Positives = 93/317 (29%), Gaps = 39/317 (12%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVS-----------YKSWAMSSRIRTTINGEVITDGDISKR 59
            F K + T  + +        S             S   + +I   +N EVIT GD + R
Sbjct: 2   SFTKKIITLSLALSSVFAIAQSDTKQVKNQVKHTLSKNATEQILAVVNDEVITMGDFASR 61

Query: 60  IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
           +  L++       ++  +Q LI E L     ++ G+T     V       A   GL+ E 
Sbjct: 62  LNTLRISGQ-HFSDEAVLQSLIDEKLMDTFAKERGLTVSDQRVAQAIQNIAAQNGLTPEQ 120

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
             +   +  I  + + + +  Q +  D+       +      +I A   +      + Y 
Sbjct: 121 MKAASSQYNINWDEYLKNIRQQILIEDLKAAIIRDRINITPHDIEAYLAQNPTGLPKGYK 180

Query: 180 --------------------------IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                                         +     +  +     + +  +A     +  
Sbjct: 181 EPVKVEPRFEKRQVVEQYFVPKAISLQHIYIRVPEGSSPETVAAAKAKANEALSKIRKGQ 240

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAI 272
           K  +   +++      + G     +  D    F N         T+  +    G   + +
Sbjct: 241 KFADVARQYSDGPEAANGGNLGIRMNEDWPALFMNATKNVRDGRTSGVFQAANGFHILRV 300

Query: 273 CDKRDLGGEIALKAYLS 289
            ++R L  +      + 
Sbjct: 301 VERRGLVDQRVKTVNVR 317



 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 64/222 (28%), Gaps = 4/222 (1%)

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
              N        +A            F    G       +   +       V        
Sbjct: 263 IRMNEDWPALFMNATKNVRDGRTSGVFQAANGFHILRVVERRGLVDQRVKTVNVRLPDPP 322

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
                E      K   + V E  +R +L     N + ++    ++I D         +  
Sbjct: 323 QPQLSEKEKAAIKEGPVEVEESHVRHILV--AINPVVDEQKAYEKIVDIANQLKSGAEFS 380

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDK 275
           +  EK++        G   +++     P F         N  + P  T+ G   + + ++
Sbjct: 381 DLAEKYSDDTSAPLGGDLSWIVRGSADPAFDQAAFSLPLNQVSEPIRTKFGWHIMEVLER 440

Query: 276 RDLGGEIALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           R L  +  ++  +        + E    +++ +LR+ + I  
Sbjct: 441 RSLDRKSDIRKDVAYEMLYQQQSENILEDWINQLRTQSYIEN 482


>gi|153827658|ref|ZP_01980325.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae MZO-2]
 gi|149737864|gb|EDM52769.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae MZO-2]
          Length = 592

 Score =  102 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/403 (7%), Positives = 91/403 (22%), Gaps = 91/403 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + +Y   +  +     +    I+ GD  +  
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYL-ISGGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                       K  +  ++ + L +Q     G+      V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119

Query: 105 ---FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                 Q        +  + + L + G     + +YL    +   ++             
Sbjct: 120 LILEIPQFQSQGVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLSGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL---- 184
                                 DF  K    + EI    +       R   ++       
Sbjct: 180 VNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIEQYYKTNTERFTRSEQVKVSYVELS 239

Query: 185 ---------------FSIPDNKLQNQGFVQKRIKDAE--------------ESRLRLPKD 215
                                 L      ++R                   +        
Sbjct: 240 ADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               ++ +  +      G   ++    + P F+        +   +    +  G   I +
Sbjct: 300 ATLAKEKSQDLGSAAEGGSLGWIEPDTMDPAFEAAAFALTEKGQVSGLVKSDFGYHIIRL 359

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            D +   +     ++  +  +    +          +L   A 
Sbjct: 360 DDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAF 402


>gi|332665906|ref|YP_004448694.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332334720|gb|AEE51821.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 455

 Score =  102 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 87/270 (32%), Gaps = 12/270 (4%)

Query: 19  YFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI---NGELEKI 75
           Y +  +     + +     +  ++  TI GE+    ++ ++ A  K Q+      E   +
Sbjct: 3   YLIFAVLLTTTMAATAQRQILDKMVATIGGEITLLSEVEEQYAYTKAQRNGAVPPEARCM 62

Query: 76  AVQE-LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
            V++ L+ + L  Q    S    D    +    +  R      +D   F +  G   N  
Sbjct: 63  LVEQILVNKLLLNQAKLDSIEVKDEEVESQLTARIERILSYMNDDLKQFEEYYGQTVNEV 122

Query: 135 KQYLAIQSIWPDVVKN---DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
           ++          +++      M        E+    +++   ++  +     +  I    
Sbjct: 123 REQFREDLRNNLLIERMRAKIMADVSVTPSEVKDFFRRIPKDSLPYFSSEVEVGEIVYKV 182

Query: 192 LQNQGFVQKRIKDAEESRLRL----PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
             N+   +  ++  E+ R R+           +K++        G   +        +F+
Sbjct: 183 PINKEQKRVTMEKLEDIRKRIVEGKEDFAELAKKYSDDGSARGGGDLGWAKRGKYVTEFE 242

Query: 248 NLLKK-SQNNTTNPYVTQKGVEYIAICDKR 276
               K  +   +    TQ G   + +  +R
Sbjct: 243 AAAYKLEEMEVSPVIETQFGFHVLQMLGRR 272


>gi|329296585|ref|ZP_08253921.1| peptidyl-prolyl cis-trans isomerase SurA [Plautia stali symbiont]
          Length = 431

 Score =  102 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 108/311 (34%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   I    ++ +  M  ++   +N  V+ + D+   +  +K Q             L
Sbjct: 7   LILGVAITANTAFAAPQMVDKVAAVVNNGVVLESDVDNMLRTVKSQAQQAGQQLPDDKTL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++  +++ +  Q  EK+G+      ++      A    +S +   S L   G+  N
Sbjct: 67  RHQFLERQVMDAIILQMGEKAGLQVSDQQLDQAIQSIAAQNRMSVDQLRSRLAYDGMNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + +  +V  N+   +   L  E+    +++ +   +   +      +P  + 
Sbjct: 127 DYRAQIRKEMLISEVRNNEVRRRVTILPQEVDTLAKQIGSQNTQGTELNISQILLPLPEN 186

Query: 193 QNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
             Q  V  +   A +                 +++    +  G   +    +L   F Q 
Sbjct: 187 PTQQQVDDQEALARQLVGELKGGADFGKLAVTYSADPQALKGGNMGWGKIEELPTLFSQT 246

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
           L    + +   P  +  G   + + D R    ++     L  ++  + +P   +    + 
Sbjct: 247 LSSAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVLARHILLKPSPILTDDQARQK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 IEQI--TADIK 315



 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 4/168 (2%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                G   +++   + + KNI+V E L R +L         +Q   QK  +   + +  
Sbjct: 259 IRSGVGFHILKVNDLRGESKNISVTEVLARHILLKPSPILTDDQA-RQKIEQITADIKSG 317

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEY 269
                    + +         G   +       P F++ L K  +   + P  +  G   
Sbjct: 318 KTTFAAAATQLSDDPGSANQGGDLDWASPEIDDPAFRDALLKLQKGQVSAPVHSSFGWHL 377

Query: 270 IAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           I + D R +   + A K          K  +    ++++ R++A +  
Sbjct: 378 IQLLDTRQVDKTDAAQKERAYRLLFNRKFAEEAQTWMQEQRASAYVKI 425


>gi|218661050|ref|ZP_03516980.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli IE4771]
          Length = 293

 Score =  102 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/301 (10%), Positives = 79/301 (26%), Gaps = 49/301 (16%)

Query: 22  LIIFCIVPIVSYKSWA-MSSRIRTTINGEVITDGDISKRIALL---KLQKINGELEKIAV 77
             +      V++++ A     +   +    I   ++   +A L     Q  + + +  A+
Sbjct: 7   FALLAFATFVAFQAPAHAEDAVVAKVGNLEIHQSELDLAVANLDPQLAQLPDDQKKVAAL 66

Query: 78  QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY 137
              I   L                      +    T    +      D++          
Sbjct: 67  SAAIDVKLL---------------AADAITEKLDQTDEFKKRMQYLSDRE---------- 101

Query: 138 LAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGF 197
                +     K   +      E++   +K+        E   R +L             
Sbjct: 102 -----LHNAYFKKHVVDTVSPDEIKARYDKEVAALPKQEEVHARHIL-----------VK 145

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNN 256
            +   K+  +            ++ ++  +    G   Y     +  +F++      +  
Sbjct: 146 TEDEAKEIIKQLDAGKDFAELAKEKSTDPNKSEGGDLGYFSRGRMVKEFEDAAFALEKGT 205

Query: 257 TTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            +  P  T  G   I + DKRD          +  Q     +       + + +++A I 
Sbjct: 206 YSKTPVKTDFGYHVIKVEDKRDAPP--PPFDQVQDQVRQLVMRDKYLTLLNQAKTSAKIE 263

Query: 316 Y 316
            
Sbjct: 264 I 264


>gi|82775458|ref|YP_401805.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella dysenteriae
           Sd197]
 gi|309787287|ref|ZP_07681899.1| chaperone surA [Shigella dysenteriae 1617]
 gi|121956480|sp|Q32K41|SURA_SHIDS RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|81239606|gb|ABB60316.1| survival protein [Shigella dysenteriae Sd197]
 gi|308924865|gb|EFP70360.1| chaperone surA [Shigella dysenteriae 1617]
          Length = 428

 Score =  102 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 106/311 (34%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++     S L   G+  N
Sbjct: 67  RHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLNQMRSRLAYDGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + I  +V  N+   +   L  E+ +  Q++ N       +      IP  + 
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                V +    A     +              ++    ++ G+  +    +L   F   
Sbjct: 187 PTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQI--AADIK 315



 Score = 82.0 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 92/287 (32%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q  N       +  L    +   E   S    ++ +  
Sbjct: 143 NNEVRRRITI--LPQEVESLAQQVGNQNDASTELN-LSHILIPLPENPTSDQVNEAESQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V  ARN     +   +    Q   +     +  IQ +     +              
Sbjct: 200 RAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   + + KNI+V E   R +L          Q  V K  + A + +   
Sbjct: 260 RSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARV-KLEQIAADIKSGK 318

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYI 270
                  ++F+         G   +       P F++   + ++   + P  +  G   I
Sbjct: 319 TTFAAAAKEFSQDPGSANQGGDLGWATADIFDPAFRDALTRLNKGQMSAPVHSSFGWHLI 378

Query: 271 AICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R++   + A K          K  +  A ++++ R++A +  
Sbjct: 379 ELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKI 425


>gi|229523938|ref|ZP_04413343.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae bv.
           albensis VL426]
 gi|229337519|gb|EEO02536.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae bv.
           albensis VL426]
          Length = 619

 Score =  102 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/403 (7%), Positives = 91/403 (22%), Gaps = 91/403 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + +Y   +  +     +    I+ GD  +  
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYL-ISGGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                       K  +  ++ + L +Q     G+      V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119

Query: 105 ---FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                 Q        +  + + L + G     + +YL    +   ++             
Sbjct: 120 LILEIPQFQSQGVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLAGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL---- 184
                                 DF  K    + EI    +       R   ++       
Sbjct: 180 VNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVELS 239

Query: 185 ---------------FSIPDNKLQNQGFVQKRIKDAE--------------ESRLRLPKD 215
                                 L      ++R                   +        
Sbjct: 240 ADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               ++ +  +      G   ++    + P F+        +   +    +  G   I +
Sbjct: 300 ATLAKEKSQDLGSAAEGGSLGWIEPDTMDPAFEAAAFALTEKGQVSGLVKSDFGYHIIRL 359

Query: 273 CDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            D +    +    ++  +  +    +          +L   A 
Sbjct: 360 DDIKAPVVKPCSEVEQAIKQELIDQQALDSFYAKQSELEKMAF 402


>gi|262189698|ref|ZP_06048066.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae CT
           5369-93]
 gi|262034418|gb|EEY52790.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae CT
           5369-93]
          Length = 365

 Score =  102 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/246 (11%), Positives = 88/246 (35%), Gaps = 4/246 (1%)

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           L +  +++LI++TL++QE ++ G+  D N +N    + A+N   + E   + + ++G+  
Sbjct: 2   LREQVLEKLIIDTLQQQEADRIGVKIDDNRLNEAIKEIAKNNQQTQEQLIASVAQEGLTY 61

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
             F++ +  +    D        +   L  E+    + +   T      +     +  + 
Sbjct: 62  PEFREQVRKEMAASDARNALVRRRINILPAEVDTLAELLAQETDATVQYKISHIQLRVDD 121

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-L 250
            Q++   +                      ++     +  G   ++ + ++   F +   
Sbjct: 122 GQDKSAAETLANKLVNDLRNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMPTIFADQIK 181

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
            +++ +   P+ +  G   + I D +    +        ++  + T    ++   + + +
Sbjct: 182 MQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTIILSDEGAQKQLNE 241

Query: 308 LRSNAI 313
                 
Sbjct: 242 FVQRIK 247



 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 82/269 (30%), Gaps = 4/269 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++     LL  +       KI+  +L V+  + +   ++      N +        
Sbjct: 88  ILPAEVDTLAELLAQETDATVQYKISHIQLRVDDGQDKSAAETLANKLVNDLRNGADFAQ 147

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                S    +      G         +    I      +        +   I       
Sbjct: 148 MAYAYSKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIDDVK 207

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKI-HD 228
              TV    +      I    + +    QK++ +  +             ++++      
Sbjct: 208 GLETVAVTEVNARHILIKPTIILSDEGAQKQLNEFVQRIKNGEVTFAELAQQYSQDPGSA 267

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKA 286
              G+  Y       P+F++ ++       + P+ T  G   + + D+R++   + ALK 
Sbjct: 268 AQKGELGYQTPDLYVPEFKHQIETLPVGQISEPFKTVHGWHIVEVLDRREVDRTDSALKN 327

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                    K  +  + ++++LR++A + 
Sbjct: 328 KAYRILFNRKFNEEASAWLQELRASAFVE 356


>gi|126463590|ref|YP_001044704.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126105254|gb|ABN77932.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 284

 Score =  102 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 77/281 (27%), Gaps = 50/281 (17%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKIN---GELEKIAVQELIVETLKKQEIEKSG 94
            +  +  T+NG+ IT G +    A L  Q  +     L K  +++LI +           
Sbjct: 31  TADTVVATVNGQDITLGHMIALRAGLPDQYQSLPDDALFKGILEQLIQQAALA------- 83

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
                                      S        D    Q      +    ++     
Sbjct: 84  --------------------------QSIEGSVTKRDQLSLQNEERGFLSAVAMRRVVEG 117

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
              +  ++   + +        EY    +L S  D   + +  +                
Sbjct: 118 AVTDEALQAAYDARFADAAPQTEYNASHILVSSEDEAKKLKEEID-----------GGAD 166

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAIC 273
                ++ +S     + G   +     +   F++ + K        P  TQ G   + + 
Sbjct: 167 FAVLAKEHSSDGAAANGGSLGWFGLGMMVKPFEDAVVKMKPGEVVGPIQTQFGWHLVKLN 226

Query: 274 DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           + R    E      +  +      ++  A ++ ++ + A I
Sbjct: 227 ETR--IAEKPSLDDMRDELAGQIEQEAVARHIDEVTAKAEI 265


>gi|319789892|ref|YP_004151525.1| SurA domain protein [Thermovibrio ammonificans HB-1]
 gi|317114394|gb|ADU96884.1| SurA domain protein [Thermovibrio ammonificans HB-1]
          Length = 282

 Score =  102 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 93/286 (32%), Gaps = 23/286 (8%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKS 93
               +   I   +NG+ I   D+ +      +  +     ++A+  LI   +   +    
Sbjct: 17  SQAKVVDYIAAVVNGQPILYSDVVRFARENHINNL-----RVALDRLIEREILLTQARSE 71

Query: 94  GITFDSNTVNYFFVQHARNTGLS-AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
           GI+     +    ++ AR  G    E+F   L+K+GI  +  ++ +  Q I   ++  D 
Sbjct: 72  GISVSDKELKTALLELARKNGFKSLEEFKKALEKEGIPFSRVEESVKDQLIVAKLIARDV 131

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
             K    ++E+      +K     E  +  +      +  +    +              
Sbjct: 132 RSKVKVSDIELDKL--CLKVEGKPEREVYYIYTKNRADAEKAMELLA-----------NG 178

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIA 271
                   + +       + G   Y+    L      ++   +  +      + G   + 
Sbjct: 179 VPFQKVARELSQDPMTAQNGGYLGYVSPGMLVKPLDRVVWSIKPGSYRLVRLKDGYYIVY 238

Query: 272 ICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           +  ++        +  L  Q    + +K   EY++ L+ +A +  Y
Sbjct: 239 VKGEKRGQC---NREKLREQLFAQRFQKALKEYIENLKRSASVKVY 281


>gi|153854234|ref|ZP_01995542.1| hypothetical protein DORLON_01534 [Dorea longicatena DSM 13814]
 gi|149753283|gb|EDM63214.1| hypothetical protein DORLON_01534 [Dorea longicatena DSM 13814]
          Length = 245

 Score =  102 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 78/281 (27%), Gaps = 46/281 (16%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKIN----GELEKIAVQELIVETLKKQEIEKS 93
           M  +I  T+ G  IT+ ++   I  L  ++       +  K   ++LI            
Sbjct: 1   MEQKIIATVGGHQITEAEVEAFIHSLPREQQAYAAHPDFRKQCEEQLI------------ 48

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
                           A+       D +                     +    ++  F 
Sbjct: 49  -----------AVYAFAKYGEEEKIDETEEFKNVME-------NARKDILAQMAMRKLF- 89

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                 + EI    +  K+   +   +      + +         +K  +          
Sbjct: 90  ATVNVTDDEIKEYYEANKSKYSKGASVHAKHILVDNE--------EKCTELLNAITSGEK 141

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAI 272
              +  ++ ++     + G         +  +F++        +   P  TQ G   I +
Sbjct: 142 VFEDVAKESSTCPSGANGGDLGEFGRGQMVKEFEDAAFAAEVGHVVGPVKTQFGYHLIKV 201

Query: 273 CDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            DK++        +K  + A+ +  K E+     V +L+  
Sbjct: 202 EDKKEAGESSLEEVKDQIRAELSQKKQEEAYRAKVDELKKK 242


>gi|323157883|gb|EFZ43986.1| chaperone surA [Escherichia coli EPECa14]
          Length = 356

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 107/311 (34%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  N
Sbjct: 67  RHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + I  +V  N+   +   L  E+ +  Q++ N       +      IP  + 
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                V +    A     +              ++    ++ G+  +    +L   F   
Sbjct: 187 PTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQI--AADIK 315


>gi|302877391|ref|YP_003845955.1| SurA domain [Gallionella capsiferriformans ES-2]
 gi|302580180|gb|ADL54191.1| SurA domain [Gallionella capsiferriformans ES-2]
          Length = 440

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/328 (10%), Positives = 108/328 (32%), Gaps = 27/328 (8%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRI---RTTI-------NGEVITDGDISKRIAL 62
           +  +    +L +  ++                   TI       N +VIT  ++++R+ +
Sbjct: 1   MSKIKFPVLLSVLSLMSTPVLAVEKHVIEPQQQVATIDAVVAVVNDDVITRLELNERLRM 60

Query: 63  LKLQKING--------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
           +  Q             LE   ++ +I E L+ Q  +++G+  D   ++    + A+   
Sbjct: 61  VVSQLKKQGTPLPEGAVLETQVLERMIAEMLQAQFAKENGVRVDDTQLDMAITRIAQQNN 120

Query: 115 LS-AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
                +F + L+  G+    F++ +  + +   + + +   K    + E+         +
Sbjct: 121 FPSLVEFMAKLESDGVNVKKFREEIRAEIVSTRLREREVESKLVISDTEVDNYLSNKSKM 180

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK---FASKIHDVS 230
            +           +   +  +   ++   + A+++  +L    +  +    F+     + 
Sbjct: 181 GLDNDEYHLAHILVVVPEQASAEKIRAARERADQAFAQLSGGADFSQVSAGFSDAKDALK 240

Query: 231 IGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALK 285
            G   +     + P F N          T    +  G   + + +KR     +       
Sbjct: 241 GGDLGWRAGDRIPPAFMNELQNLKPGQNTAVLRSPSGFHILKLVEKRGGSAPVVITQTHA 300

Query: 286 AYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            ++  + +    E    + + +++    
Sbjct: 301 RHILIKTSEIVTEAEAKKQLLEIKQRID 328



 Score = 90.9 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 50/139 (35%), Gaps = 1/139 (0%)

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
                   I  +++  +   +K++ + ++          + ++++        G   +L 
Sbjct: 297 QTHARHILIKTSEIVTEAEAKKQLLEIKQRIDGGAGFAEQAKRYSQDGSAQQGGDLDWLS 356

Query: 239 ESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAYLSAQNTPTKI 297
                P+F+  + K Q        TQ G   I +  +R+    E   +          K 
Sbjct: 357 PGQTVPEFEGAINKLQVGQMGMVQTQFGWHLIQVLARRNTDVSEQQKRQQARVSIGTFKS 416

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           E+   +++++LR  A + Y
Sbjct: 417 EELYQDWLRQLRDRAFVEY 435


>gi|253699826|ref|YP_003021015.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
 gi|251774676|gb|ACT17257.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
          Length = 325

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/324 (13%), Positives = 95/324 (29%), Gaps = 24/324 (7%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSS-------RIRTTINGEVITDGDISK------- 58
           ++++ T   L+  C + +                 +I   +N   I    I         
Sbjct: 1   MQVMKTIICLLSACALSLAGNHQAWAEPMAEDNGLQIAARVNDRPIYYHQIKANVERTLA 60

Query: 59  RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
           +       KI+ +++K   ++ +   +  + + ++G       +           G    
Sbjct: 61  KYKRFGASKISDDVKKQVQKDELDRQVNMELLVQAGEKLKETDLEKKMEALLNMKGP--- 117

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
           D S  + K    +   ++ L    +    +    +      E E+    +          
Sbjct: 118 DGSPRVKKDESREKEMREQLRRNLLAESYLVLRGIQDVRVPEEELKRFYKDNSAKFAVPE 177

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKD----AEESRLRLPKDCNKLEKFASKIHDVSIGKA 234
            ++     I  +K      V K         EE            ++ +S       G  
Sbjct: 178 AVKVSHIMIAVDKKATPQEVAKANAKIVKVREELLQGKKSFEELAKEHSSGDSAAKGGDL 237

Query: 235 QYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQ 291
            Y+    + P+F +   +      ++   T+ G   I   DK+   +     +K  L   
Sbjct: 238 GYINPQFMPPEFDKAAFQLKSGEVSDVVKTKFGFHLIKAFDKKPGRIQEFSEVKVLLEKF 297

Query: 292 NTPTKIEKHEAEYVKKLRSNAIIH 315
                 E+  AE   +LR +A I 
Sbjct: 298 LLNQYQERKRAEIAMELRRDARIE 321


>gi|94986747|ref|YP_594680.1| parvulin-like peptidyl-prolyl isomerase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94730996|emb|CAJ54359.1| Parvulin-like peptidyl-prolyl isomerase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 308

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/297 (15%), Positives = 101/297 (34%), Gaps = 22/297 (7%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN-----------GELEKIAVQELIV 82
            +    ++    +NGE+IT  D+    A    ++              +LEK  ++ +I 
Sbjct: 18  SAEQFINKTVAVVNGEIITLFDLQAETAPEIFRQQLNPNNPADKAKVEQLEKAILEGMIS 77

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
             +  QE E+  +    + V   +      + L+ E+F   L+ Q + ++ FK+ +    
Sbjct: 78  NLILTQEAERLHVNVGKDEVESEYHNFIAKSQLTPEEFQYQLELQHLTEDSFKERIRSSI 137

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           +   ++      K    + EI    QK  +       ++  +   P +        + + 
Sbjct: 138 LRSRLLGAMVGRKIVVTKKEIEDYYQKNHDKLKNNNQLQLAILVYPPDINAKDWAARIK- 196

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPY 261
                           ++K +        G    +   DL+P++ + L        T+  
Sbjct: 197 -------SGSVSFEEVVKKVSVGPKAKEGGDLGSIDIEDLNPEWLEQLSTMKPGEVTSLI 249

Query: 262 VTQKGVEYIAICD--KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                   + + +  K +      L  Y+       K+E+   EY  +LR  A++  
Sbjct: 250 DINGLQGQLKLINIIKGEPQTLETLTPYIEEILREPKLEERFKEYTDQLRKRAVVDI 306


>gi|307265095|ref|ZP_07546655.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306919893|gb|EFN50107.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 301

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/305 (10%), Positives = 89/305 (29%), Gaps = 16/305 (5%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ-KINGELEK 74
           +     L++F +  +    S +    +  T+NGE IT+ +  K    +K Q + + +  K
Sbjct: 1   MKRKIALLLFFVFIVFLTVSCSTKKDVVATVNGENITNAEYKKAFDQVKAQIESSPQYTK 60

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
               +          ++++ +                N  ++ ++ +    K+   +   
Sbjct: 61  DIWDQDYQGKKFLDVVKENVLDSLIAQKLLVQEALKNNITVTDKEIADEYQKEKEVNKDI 120

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
            +      +  + + +++       E E+    +  K           ++          
Sbjct: 121 TKEDVKNYLLINKLFDEYTKDVKVTEEELKKYYEDNKEQFEVVKASHILV---------- 170

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK- 252
               +K  +D     ++        ++++         G         +  +F  ++   
Sbjct: 171 --ADEKTAEDIYNRLMKGEDFATLAKEYSIDTATKDQGGDLGEFPHGVMVSEFDQVVFSL 228

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
            +   + P  T  G   I       +     +K  +       K  +   E    L   A
Sbjct: 229 KKGEISKPVKTDYGYHIIKSEGI-TIKPFDEVKDAIEGYLLDDKKNQVIKEKYDALEKAA 287

Query: 313 IIHYY 317
            I  +
Sbjct: 288 KIQKF 292


>gi|256059916|ref|ZP_05450102.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella neotomae
           5K33]
 gi|261323889|ref|ZP_05963086.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella neotomae
           5K33]
 gi|261299869|gb|EEY03366.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella neotomae
           5K33]
          Length = 328

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 86/279 (30%), Gaps = 45/279 (16%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS 99
           S++  TING+ IT G++ +    L  Q     +E+  +  LI       E EK  +    
Sbjct: 61  SKVLATINGKDITVGEVDQAAGDLDPQFARLPVEQRRLAALIDIKAMAGEAEKDKL---- 116

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
                                      Q        ++L  +++  +  KN  + K  + 
Sbjct: 117 --------------------------DQTKEFKDRMEFLCERALHNEYFKNAIVDKISDA 150

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
           ++    +K+        E   R +L    +                 +      K  +  
Sbjct: 151 DVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA-----------IIKKLEGGAKFEDLA 199

Query: 220 EKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT-NPYVTQKGVEYIAICDKRD 277
           +  ++     S G   Y  E  + P+F+           T  P  TQ G   I + D+R 
Sbjct: 200 KASSTDGTASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRT 259

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                     +  Q     + +   E VKKLR    I Y
Sbjct: 260 KQP--PAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDY 296


>gi|269961041|ref|ZP_06175410.1| peptidyl-prolyl cis-trans isomerse D [Vibrio harveyi 1DA3]
 gi|269834260|gb|EEZ88350.1| peptidyl-prolyl cis-trans isomerse D [Vibrio harveyi 1DA3]
          Length = 619

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/403 (9%), Positives = 102/403 (25%), Gaps = 91/403 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + SY     ++     +    I  G+     
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVGGNNNS-AAKVGNTEIARGEFEMAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                       K  +  +I + L  Q+ E  G+      V  
Sbjct: 60  QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDAQVRS 119

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN----------- 150
                 Q   N     + + + L + G   + F +Y+  + +   ++             
Sbjct: 120 MILDMPQFQSNGQFDQDIYQASLRRAGFSPDSFAEYMRRELVREQLLNALQTSEFTLPGE 179

Query: 151 ----------------------DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                 +F  K    + EI    +   ++  R   ++     + 
Sbjct: 180 VQAEGKLFTQTRDVRTITIDLNEFAKKVDLTDEEIQDYYKANPDMFTRPEQVKVAYIELS 239

Query: 189 DNKLQNQGFV---------------------------------QKRIKDAEESRLRLPKD 215
             +L+ Q  V                                 + + +   +        
Sbjct: 240 AEELKKQVQVSDEDVKKYYDEHLDKYSTEEQRRVAHILVEGDDEAKAQAILDELNAGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               ++ +       + G   ++    + P F+      K+  + T    +  G   I +
Sbjct: 300 ATVAKEKSDDFGSAENGGDLGWIERDVMDPAFEEAAFALKNPGDMTGLVKSDFGYHIIKL 359

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            + +         + A +  +    K      E   +L   A 
Sbjct: 360 EELKGAVAKPYSEVAAEIKQEMIDQKAVDQFYELQNELEKVAF 402


>gi|218673531|ref|ZP_03523200.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli GR56]
          Length = 293

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/301 (10%), Positives = 79/301 (26%), Gaps = 49/301 (16%)

Query: 22  LIIFCIVPIVSYKSWA-MSSRIRTTINGEVITDGDISKRIALL---KLQKINGELEKIAV 77
             +      V++++ A     +   +    I   ++   +A L     Q  + + +  A+
Sbjct: 7   FALLAFATFVAFQAPAHAEDAVVAKVGNLEIHQSELDLAVANLDPQLAQLPDDQKKVAAL 66

Query: 78  QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY 137
              I   L                      +    T    +      D++          
Sbjct: 67  SAAIDVKLL---------------AADAITEKLDQTEEFKKRMQYLSDRE---------- 101

Query: 138 LAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGF 197
                +     K   +      E++   +K+        E   R +L             
Sbjct: 102 -----LHNAYFKKHVVDTVTPEEIKARYDKEVAALPKQEEVHARHIL-----------VK 145

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNN 256
            +   K+  +            ++ ++  +    G   Y     +  +F++      +  
Sbjct: 146 TEDEAKEIIKQLDAGKDFAELAKEKSTDPNKSEGGDLGYFSRGRMVKEFEDAAFALEKGT 205

Query: 257 TTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            +  P  T  G   I + DKRD          +  Q     +       + + +++A I 
Sbjct: 206 YSKTPVKTDFGYHVIKVEDKRDAPP--PPFDQVQDQVRQLVMRDKYLALLNQAKTSAKIE 263

Query: 316 Y 316
            
Sbjct: 264 I 264


>gi|320642095|gb|EFX11446.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7
           str. G5101]
          Length = 428

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/311 (12%), Positives = 106/311 (34%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------L 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  N
Sbjct: 67  RHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + I  +   N+   +   L  E+ +  Q++ N       +      IP  + 
Sbjct: 127 TYRNQIRKEMIISEARNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                V +    A     +              ++    ++ G+  +    +L   F   
Sbjct: 187 PTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQI--AADIK 315



 Score = 82.8 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 92/287 (32%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q  N       +  L    +   E   S    ++ +  
Sbjct: 143 NNEVRRRITI--LPQEVESLAQQVGNQNDASTELN-LSHILIPLPENPTSDQVNEAESQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V  ARN     +   +    Q   +     +  IQ +     +              
Sbjct: 200 RAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   + + KNI+V E   R +L          Q  V K  + A + +   
Sbjct: 260 RSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARV-KLEQIAADIKSGK 318

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYI 270
                  ++F+         G   +       P F++   + ++   + P  +  G   I
Sbjct: 319 TTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLI 378

Query: 271 AICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R++   + A K          K  +  A ++++ R++A +  
Sbjct: 379 ELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKI 425


>gi|322417708|ref|YP_004196931.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
 gi|320124095|gb|ADW11655.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
          Length = 308

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 88/311 (28%), Gaps = 45/311 (14%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSR-------IRTTINGEVITDGDISKRIALLKLQ 66
               T  ++ +   V     ++   + +       +   +NG  ITD D  K  A L  Q
Sbjct: 4   SKTATVLLIALCVAVTGCKQQASTEAKKEGPGKGIVLAEVNGTTITDNDFYKEQAALPPQ 63

Query: 67  KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
                      +E+I   + ++ I +       +                          
Sbjct: 64  LKPMTETPEGKKEMIDTMVVRELIMQQAQKDGIDKSPEV--------------------- 102

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
                    + L  + I    +K          + E+     K K+    +  IR     
Sbjct: 103 -----AAKLEDLKKRVIVEAFLKKKIEDSGVVSDAELQDYYNKNKDKFKSDAQIRASHIL 157

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
                       +   ++ ++            +K +        G   +  +  + P+F
Sbjct: 158 ---------VKSEAEAQEIQKQLKAGASFEELAKKHSMDGAAQKGGDLGWFSKGSMIPEF 208

Query: 247 QNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGG--EIALKAYLSAQNTPTKIEKHEAE 303
           +++     +  T+    TQ G   I    KR  G      +K  + A   PTK ++   +
Sbjct: 209 ESVAFGLKEGETSGIVKTQFGYHIIKQTGKRPAGVRSFEEVKDQIKAALLPTKQQETFKK 268

Query: 304 YVKKLRSNAII 314
               L+  A +
Sbjct: 269 LKDDLKKEAKV 279


>gi|210620911|ref|ZP_03292328.1| hypothetical protein CLOHIR_00271 [Clostridium hiranonis DSM 13275]
 gi|210155123|gb|EEA86129.1| hypothetical protein CLOHIR_00271 [Clostridium hiranonis DSM 13275]
          Length = 260

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 85/278 (30%), Gaps = 37/278 (13%)

Query: 41  RIRTTINGEVITDGDISKRIALLKLQKI----NGELEKIAVQELIVETLKKQEIEKSGIT 96
           ++  TING  I++ D+   +  +  Q+     + E +K  +++L+ + L   E + + + 
Sbjct: 4   KVLATINGREISNIDLDNAVKSMHPQQQMRFQSEEGKKRLLEDLVNQELFYLEAKDNKVD 63

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
                                                  + + I  +    +   FM   
Sbjct: 64  ETEEFK------------------------------ALMEQVTINMLKQHALNQLFMAAM 93

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
              E       +      V E      +    +N+ +      +  + AEE +       
Sbjct: 94  PTEEEAKAYYDEHQDEFKVDEMAKARHILIKAENEDEFAAAEARAKEIAEEIKAGEKTFE 153

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDK 275
                ++    ++  G      +  + P+F+      ++   + P  T  G   I + ++
Sbjct: 154 QAAIDYSDCPSNMQGGDLGLFGKGQMVPEFEEAVFSMNEGELSEPVKTSFGYHLIKVEER 213

Query: 276 RDLGG--EIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
              G      +K  +  +    K  K   + V +LR  
Sbjct: 214 HKAGVSKFEEVKDEILGKLAQLKQLKAYEDKVAELREK 251


>gi|254708930|ref|ZP_05170741.1| parvulin-like PPIase precursor [Brucella pinnipedialis B2/94]
 gi|256030456|ref|ZP_05444070.1| parvulin-like PPIase precursor [Brucella pinnipedialis M292/94/1]
 gi|261316430|ref|ZP_05955627.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
           pinnipedialis B2/94]
 gi|265987500|ref|ZP_06100057.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
           pinnipedialis M292/94/1]
 gi|261295653|gb|EEX99149.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
           pinnipedialis B2/94]
 gi|264659697|gb|EEZ29958.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
           pinnipedialis M292/94/1]
          Length = 328

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 86/279 (30%), Gaps = 45/279 (16%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS 99
           S++  TING+ IT G++ +    L  Q     +E+  +  LI       E EK  +    
Sbjct: 61  SKVLATINGKDITVGEVDQAAGDLDPQFARLPVEQRRLAALIDIKAMAGEAEKDKL---- 116

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
                                      Q        ++L  +++  +  KN  + K  + 
Sbjct: 117 --------------------------DQTKEFKDRMEFLRERALHNEYFKNAIVDKISDA 150

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
           ++    +K+        E   R +L    +                 +      K  +  
Sbjct: 151 DVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA-----------IIKKLEGGAKFEDLA 199

Query: 220 EKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT-NPYVTQKGVEYIAICDKRD 277
           +  ++     S G   Y  E  + P+F+           T  P  TQ G   I + D+R 
Sbjct: 200 KASSTDGTASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRT 259

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                     +  Q     + +   E VKKLR    I Y
Sbjct: 260 KQP--PAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDY 296


>gi|319781324|ref|YP_004140800.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317167212|gb|ADV10750.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 305

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/283 (13%), Positives = 80/283 (28%), Gaps = 49/283 (17%)

Query: 40  SRIRTTINGEVITDGDI---SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGIT 96
           +++  T+NG+ +T+ D+      ++    Q    +    A+   I   +   +   +G+ 
Sbjct: 50  NKVIATVNGQPLTEADLVLAEGELSQQFAQLPPEQRRAAALSAAIEIRVMAAQAVTTGLD 109

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
            D +                                    +L  +++  ++V+   + K 
Sbjct: 110 KDPDFQRR------------------------------MAFLQQRALHGEMVEKGVVDKV 139

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
            + E+    +++        E   R +L    +                 +         
Sbjct: 140 TDAEVRARYDQEIANTPPTNELHARHILVKTKEEAEA-----------IIKQLDGGADFQ 188

Query: 217 NKLEKFASKIHDV-SIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAIC 273
               +  S      S G   +     + P+F +          T  P  TQ G   I + 
Sbjct: 189 KLANEHTSDPSGKTSGGDLGWFGPGQMVPEFDKAASALEVGKYTEQPVQTQFGWHVIKLE 248

Query: 274 DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           DKR           +  Q     I       VK LR+ A +  
Sbjct: 249 DKRTKQP--PAFDDVKDQAKQAVIRDKYFALVKSLRAGAKVEI 289


>gi|331650947|ref|ZP_08351975.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli M718]
 gi|331051401|gb|EGI23450.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
           surA) (Rotamase surA) [Escherichia coli M718]
          Length = 428

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 106/311 (34%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------L 72
           +L+   ++   S+    +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAVPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  N
Sbjct: 67  RHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + I  +V  N+   +   L  E+ +  Q++ N       +      IP  + 
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                V +    A     +              ++    ++ G+  +    +L   F   
Sbjct: 187 PTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LEQI--AADIK 315



 Score = 82.8 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 92/287 (32%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q  N       +  L    +   E   S    ++ +  
Sbjct: 143 NNEVRRRITI--LPQEVESLAQQVGNQNDASTELN-LSHILIPLPENPTSDQVNEAESQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V  ARN     +   +    Q   +     +  IQ +     +              
Sbjct: 200 RAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   + + KNI+V E   R +L          Q  V K  + A + +   
Sbjct: 260 RSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARV-KLEQIAADIKSGK 318

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYI 270
                  ++F+         G   +       P F++   + ++   + P  +  G   I
Sbjct: 319 TTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLI 378

Query: 271 AICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R++   + A K          K  +  A ++++ R++A +  
Sbjct: 379 ELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKI 425


>gi|85706339|ref|ZP_01037433.1| PPIC-type PPIASE domain protein [Roseovarius sp. 217]
 gi|85669112|gb|EAQ23979.1| PPIC-type PPIASE domain protein [Roseovarius sp. 217]
          Length = 420

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/288 (11%), Positives = 103/288 (35%), Gaps = 7/288 (2%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRT---TINGEVITDGDISKRIAL 62
            T ++  ++       L    +  +    S   +  +      +N + IT  ++ +R  +
Sbjct: 4   LTRMTPILRRTLAALTLAAIGLTGLPGGVSPVQAQNLFAPAIHVNDQAITGYELQQRARM 63

Query: 63  LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
           L L +  G+  ++A ++LI E +K       G+  + + V     + A    ++A+   S
Sbjct: 64  LTLFRAPGDPRRLAREQLIEERIKLDAARAVGLVVEDDMVRTGMEEFAGRANMTADQLIS 123

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
            L++ G+    F++++     W ++ +  F  +    E ++    + +        L+  
Sbjct: 124 SLEEAGVSQQSFREFVRAGITWRELTRAQFASRVSVSEDDLERATRALTGGAAVRVLLSE 183

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
           ++  +           ++ +                  ++++       G+ +++  SDL
Sbjct: 184 IILPVTSLGD---AEAKQALATQIAEADSEGDFAAAARQYSAAPSAGRGGRMEWVALSDL 240

Query: 243 HPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS 289
               + ++   +    ++P     G+    + D  +        + + 
Sbjct: 241 PAGLRPIVLGLAPGEVSDPLPIDGGLALFYMRDIEETSVAAPEYSAIE 288



 Score = 42.0 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 4/84 (4%)

Query: 235 QYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKG--VEYIAICDKRDL-GGEIALKAYLSA 290
                 ++         +     T+       G  + ++ +C +     GE      LS 
Sbjct: 334 GSKAPEEIPQDIAAALSQLDPGETSASVTRSNGQTLVFLMLCGRSPKLDGEAPSVEDLSN 393

Query: 291 QNTPTKIEKHEAEYVKKLRSNAII 314
                +IE     Y+++LR+ A I
Sbjct: 394 FIRNQRIESFANGYLEQLRAEARI 417


>gi|308185631|ref|YP_003929762.1| survival protein SurA precursor [Pantoea vagans C9-1]
 gi|308056141|gb|ADO08313.1| survival protein SurA precursor [Pantoea vagans C9-1]
          Length = 431

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/310 (11%), Positives = 106/310 (34%), Gaps = 18/310 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   I    ++ +  +  ++   +N  V+ + D+   +  +K Q             L
Sbjct: 7   LILGVAISANTAFAAPQVVDKVAAVVNNGVVLESDVDGMMGTVKSQAQQAGQQLPDDKTL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++  I++ +  Q  EK+GI      ++      A    +S +   S L   G+  +
Sbjct: 67  RHQILERQIMDNIILQMGEKAGIQISDEQLDQAIQNIAAQNRMSLDQLRSRLAYDGMNYS 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  +    +V  N+   +   L  E+     ++ +   +   +      +P  + 
Sbjct: 127 VYRSQIRKEMTIAEVRNNEVRRRVTILPQEVDTLANQIGSQNSQGTELNVSHILLPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
             Q  V ++   A++    L    +       +++    +  G   +    +L   F   
Sbjct: 187 PTQQQVDEQETLAKQLVGELKNGADFGKMAVTYSADSQALKGGNMGWGKIEELPTLFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   +      
Sbjct: 247 LATAKKGDIVGPVRSGVGFHILKVNDLRGESKNVSVTEVHSRHILLKPSPILTDDQARAQ 306

Query: 305 VKKLRSNAII 314
           ++++   A I
Sbjct: 307 LEQI--AADI 314



 Score = 86.7 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 87/294 (29%), Gaps = 26/294 (8%)

Query: 43  RTTI-NGEV-----ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGIT 96
              + N EV     I   ++      +  Q   G    ++   L        E       
Sbjct: 138 IAEVRNNEVRRRVTILPQEVDTLANQIGSQNSQGTELNVSHILL-----PLPENPTQQQV 192

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND----- 151
            +  T+    V   +N     +   ++             +  I+ +     +       
Sbjct: 193 DEQETLAKQLVGELKNGADFGKMAVTYSADSQALKGGNMGWGKIEELPTLFAQALATAKK 252

Query: 152 ------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
                      G   +++   + + KN++V E   R +L         +Q    +  + A
Sbjct: 253 GDIVGPVRSGVGFHILKVNDLRGESKNVSVTEVHSRHILLKPSPILTDDQA-RAQLEQIA 311

Query: 206 EESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVT 263
            + R          ++++         G   +       P F++ L +  +  T+ P  +
Sbjct: 312 ADIRSGKTTFAAAAKQYSDDPGSANQGGDLGWTSPEVFDPAFRDALLRLKKGQTSQPVHS 371

Query: 264 QKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             G   I + D R +   + A K          K  +    ++++ R++A +  
Sbjct: 372 SFGWHLIQLLDTRQVDKTDAAQKERAYRMLFNRKFAEEAQTWMQEQRASAYVKI 425


>gi|268316286|ref|YP_003290005.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
           DSM 4252]
 gi|262333820|gb|ACY47617.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
           DSM 4252]
          Length = 350

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/297 (11%), Positives = 89/297 (29%), Gaps = 21/297 (7%)

Query: 35  SWAMSSRIRTTI----NGEVITDGDISKRIALLKLQKIN--------GELEKIAVQELIV 82
           +    S +   +      + +T  +  ++++ +  +            E+ K  +++ IV
Sbjct: 51  APVSDSTVAAIVTSEYGSDTLTAEEFRQQLSFILQRYPQIQMNPALMPEVHKSIIEDFIV 110

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
             +   EI + GI  D   V     Q             +    Q        + +  Q 
Sbjct: 111 RHVVDGEIARQGIQADPAAVEQELEQIRARFPSPEAFQEALT--QDGLTEDSLRGMIAQM 168

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           +     +     +      +    +Q  +      ++   +    P+   +    V+ R 
Sbjct: 169 VRQRTFREQIESRATPPTDDE--VEQFRQQQAEEVHVQHILFRLAPNASEEEAAAVKARA 226

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN---TTN 259
           +   +S            + +        G   ++   +    F+      +++   TT 
Sbjct: 227 QAVLDSIRSGADFAEMARRHSEDGSAQEGGDLGFIRRGETVEPFEEAAFALRDSGDVTTE 286

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           P  T+ G   I + ++R      A       Q    + ++     +++L + A +  
Sbjct: 287 PVRTRFGYHLIRLLERRQGTPMDAA--EAREQLLQERKQEAVQHLLEELLAKATVRI 341


>gi|297579436|ref|ZP_06941364.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae RC385]
 gi|297537030|gb|EFH75863.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae RC385]
          Length = 619

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/403 (7%), Positives = 91/403 (22%), Gaps = 91/403 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + +Y   +  +     +    I+ GD  +  
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYL-ISGGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                       K  +  ++ + L +Q     G+      V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119

Query: 105 ---FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                 Q        +  + + L + G     + +YL    +   ++             
Sbjct: 120 LILEIPQFQSQGVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLAGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL---- 184
                                 DF  K    + EI    +       R   ++       
Sbjct: 180 VNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVELS 239

Query: 185 ---------------FSIPDNKLQNQGFVQKRIKDAE--------------ESRLRLPKD 215
                                 L      ++R                   +        
Sbjct: 240 ADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               ++ +  +      G   ++    + P F+        +   +    +  G   I +
Sbjct: 300 ATLAKEKSQDLGSAEEGGSLGWIEPDTMDPAFEAAAFALTEKGQVSGLVKSDFGYHIIRL 359

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            + +   +     ++  +  +    +          +L   A 
Sbjct: 360 DEIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAF 402


>gi|89892936|ref|YP_516423.1| hypothetical protein DSY0190 [Desulfitobacterium hafniense Y51]
 gi|219666202|ref|YP_002456637.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfitobacterium
           hafniense DCB-2]
 gi|89332384|dbj|BAE81979.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536462|gb|ACL18201.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfitobacterium
           hafniense DCB-2]
          Length = 315

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/329 (10%), Positives = 97/329 (29%), Gaps = 43/329 (13%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +  F K +    VL +       +  S A   +    +NGE IT+ D + R++ ++    
Sbjct: 1   MRSFRKGIIAALVLTLAL-----TGCSSAGGDQWAAKVNGETITEQDFAARVSNVQKAYE 55

Query: 69  N--------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
                           +++   ++ +I   L  QE ++  +  +  ++        +  G
Sbjct: 56  GMGMDFSTDQGKEALNQVKSQVLEAMIASRLVIQEAQRLKLDVNDPSILEQEKNIIQMVG 115

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
                     + Q       +     +      +  +          +     +  + + 
Sbjct: 116 ---------DESQYQEWLKQQAMTEDEVKNYFALSAEITKDVTVTPEQEKTFFENNQELY 166

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGK 233
             +         + + + + +  + +                   ++ ++      S G 
Sbjct: 167 GGKGEEVQARHILVETEDEAKAIIAQ--------LDGGADFSELAKEKSTDTGSQSSGGY 218

Query: 234 AQYLLESDLHPQFQN-LLKKSQNNTTN-PYVTQKGVEYIAICDKRDLG--GEIALKAYLS 289
                +  + P+F+     +     T  P  ++ G   I + D +        A+K+ ++
Sbjct: 219 LGSFGKGKMVPEFEEAAFAQEVGTYTKTPVKSEFGYHIILVEDHKAATKADYEAVKSQVA 278

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAI--IHY 316
                    +    Y  +LR  A   I Y
Sbjct: 279 EDALADAKAQKFGGYFDELREKAKANIEY 307


>gi|304396535|ref|ZP_07378416.1| Peptidylprolyl isomerase [Pantoea sp. aB]
 gi|304356044|gb|EFM20410.1| Peptidylprolyl isomerase [Pantoea sp. aB]
          Length = 431

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/304 (10%), Positives = 107/304 (35%), Gaps = 16/304 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   I    ++ +  +  ++   +N  V+ + D+   ++ +K Q             L
Sbjct: 7   LILGVAISANTAFAAPQVVDKVAAVVNNGVVLESDVDGMMSTVKSQAQQAGQQLPDDKTL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++  I++ +  Q  +K+G+      ++      A    +S +   S L   G+  +
Sbjct: 67  RHQILERQIMDNIILQMGDKAGVQISDEQLDQAIQNIAAQNKMSLDQLRSRLAYDGMNYS 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  +    +V  N+   +   L  E+    +++ +   +   +      +P  + 
Sbjct: 127 VYRSQIRKEMTIAEVRNNEVRRRITILPQEVDTLAKQIGSQNSQGTELNVSHILLPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
             Q  V ++   A++    L    +       +++    +  G   +    +L   F   
Sbjct: 187 PTQQQVDEQETLAKQLVGELKNGADFGKMAVTYSADSQALKGGNMGWGKIEELPTLFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   ++     
Sbjct: 247 LSSAKKGDIVGPIRSGVGFHILKVNDLRGENKNVSVTEVHSRHILLKPSPILTDEQARAQ 306

Query: 305 VKKL 308
           ++++
Sbjct: 307 LEQI 310



 Score = 86.3 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 86/294 (29%), Gaps = 26/294 (8%)

Query: 43  RTTI-NGEV-----ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGIT 96
              + N EV     I   ++      +  Q   G    ++   L        E       
Sbjct: 138 IAEVRNNEVRRRITILPQEVDTLAKQIGSQNSQGTELNVSHILL-----PLPENPTQQQV 192

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND----- 151
            +  T+    V   +N     +   ++             +  I+ +     +       
Sbjct: 193 DEQETLAKQLVGELKNGADFGKMAVTYSADSQALKGGNMGWGKIEELPTLFAQALSSAKK 252

Query: 152 ------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
                      G   +++   + + KN++V E   R +L          Q    +  + A
Sbjct: 253 GDIVGPIRSGVGFHILKVNDLRGENKNVSVTEVHSRHILLKPSPILTDEQA-RAQLEQIA 311

Query: 206 EESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVT 263
            + R          ++++         G   +       P F++ L +  +  T+ P  +
Sbjct: 312 NDIRSGKTTFAAAAKQYSDDPGSANQGGDLGWTSPEVFDPAFRDALLRLKKGQTSQPVHS 371

Query: 264 QKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             G   I + D R +   + A K          K  +    ++++ R++A +  
Sbjct: 372 SFGWHLIQLLDTRQVDKTDAAQKERAYRMLFNRKFAEEAQTWMQEQRASAYVKI 425


>gi|217978662|ref|YP_002362809.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocella
           silvestris BL2]
 gi|217504038|gb|ACK51447.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocella
           silvestris BL2]
          Length = 322

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 75/279 (26%), Gaps = 49/279 (17%)

Query: 42  IRTTINGEVITDGDI----SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
           +  T+NG+ IT+ D+          L  Q      +   V  LI   L  Q+ +   +  
Sbjct: 56  VLATVNGQEITENDLAIAKDDLAGSLPQQLQGKARDTYVVDFLIDGALVSQKAKADKLDA 115

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                      H +                               +   ++         
Sbjct: 116 TPEFAKKLAYYHEK------------------------------LLMETLLGQVAKAALT 145

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
           +  ++   +          E   R +L +   +       ++              +   
Sbjct: 146 DEAIKKTYDDALKAQKPETEVHARHILVATDADAEAVLKRLKA-----------GEEFAK 194

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
             ++ +        G   +  +  + P+F +   K      + P  +  G   I +  KR
Sbjct: 195 VAKEVSKDTSA-DGGDLGWFTKDKMVPEFAEAAFKLEPGQLSAPVKSPFGWHIILVEGKR 253

Query: 277 DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +          +  Q +   ++K + E V  LR +A I 
Sbjct: 254 EKP--FPALDEVKDQVSRYVVQKAQGELVAGLRKDAKIE 290


>gi|27065591|pdb|1M5Y|A Chain A, Crystallographic Structure Of Sura, A Molecular Chaperone
           That Facilitates Outer Membrane Porin Folding
 gi|27065592|pdb|1M5Y|B Chain B, Crystallographic Structure Of Sura, A Molecular Chaperone
           That Facilitates Outer Membrane Porin Folding
 gi|27065593|pdb|1M5Y|C Chain C, Crystallographic Structure Of Sura, A Molecular Chaperone
           That Facilitates Outer Membrane Porin Folding
 gi|27065594|pdb|1M5Y|D Chain D, Crystallographic Structure Of Sura, A Molecular Chaperone
           That Facilitates Outer Membrane Porin Folding
          Length = 408

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 92/280 (32%), Gaps = 18/280 (6%)

Query: 52  TDGDISKRIALLKLQKINGE--------LEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            + D+   +  +KL              L    ++ LI++ +  Q  +K G+      ++
Sbjct: 18  LESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLD 77

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
                 A+   ++ +   S L   G+  N ++  +  + I  +V  N+   +   L  E+
Sbjct: 78  QAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEV 137

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR---LPKDCNKLE 220
            +  Q++ N       +      IP  +      V +    A     +            
Sbjct: 138 ESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAI 197

Query: 221 KFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR--- 276
             ++    ++ G+  +    +L   F        + +   P  +  G   + + D R   
Sbjct: 198 AHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGES 257

Query: 277 -DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            ++        ++  + +P   ++     ++++   A I 
Sbjct: 258 KNISVTEVHARHILLKPSPIMTDEQARVKLEQI--AADIK 295



 Score = 83.2 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 92/287 (32%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q  N       +  L    +   E   S    ++ +  
Sbjct: 123 NNEVRRRITI--LPQEVESLAQQVGNQNDASTELN-LSHILIPLPENPTSDQVNEAESQA 179

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V  ARN     +   +    Q   +     +  IQ +     +              
Sbjct: 180 RAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPI 239

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   + + KNI+V E   R +L          Q  V K  + A + +   
Sbjct: 240 RSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARV-KLEQIAADIKSGK 298

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYI 270
                  ++F+         G   +       P F++   + ++   + P  +  G   I
Sbjct: 299 TTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLI 358

Query: 271 AICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R++   + A K          K  +  A ++++ R++A +  
Sbjct: 359 ELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKI 405


>gi|91775766|ref|YP_545522.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacillus
           flagellatus KT]
 gi|91709753|gb|ABE49681.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacillus
           flagellatus KT]
          Length = 626

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/397 (11%), Positives = 112/397 (28%), Gaps = 94/397 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +      ++  +    + I F +V + SY   A SS     ++GE IT  + S  +
Sbjct: 1   MLEAIRNRSKGWLAKVILAAITIPFALVGVDSYLRDAGSSVAVAKVDGESITVQEYSNAL 60

Query: 61  ALLKLQKING-----------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ- 108
             L+ +  +            EL++  +  L+   L   E++++        ++++ +Q 
Sbjct: 61  QNLRNRLQSEGKVDQAVIDGPELKQAVIDHLVEGRLLANEVKRAKFVVSDEQLSHYIMQE 120

Query: 109 --HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK----------------- 149
               ++   S   +  FL ++    + F+  +    +     +                 
Sbjct: 121 ESFHQDGQFSQALYDQFLAERRRTPSQFENEVRTDLLTMQAREGLSALAFVPNGVANNAI 180

Query: 150 ----------------NDFMLKYGNLEMEIPANKQKMKNITV------------------ 175
                            D++ +    E E+ A  ++ ++                     
Sbjct: 181 KVAHQSREVSIAEFRTADYLSQVKVTEDEVNAYYKEHQDKFKVPEQVKLEFVLLSANALI 240

Query: 176 ----------------------REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                                  +   R     I           QK  + AEE    + 
Sbjct: 241 PSQQVTEEEAREYYAQNAAQFQGDEQRRASHILIGFGVSPTPETKQKAKEKAEEVLALVK 300

Query: 214 KDCNKLEKFASKI-----HDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGV 267
           K+  + E+ A +           G         +   F++ +        ++   T  G 
Sbjct: 301 KNPERFEQLAHQYSQDPGSKDKGGDLGLFGPGTMVKPFEDAVFSMKPGTISDLVETDFGY 360

Query: 268 EYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAE 303
             I + +          ++  + A+    K     +E
Sbjct: 361 HIIKLTEIHGSGQSFEDVQGQIRAELMYQKALAQFSE 397


>gi|326390841|ref|ZP_08212393.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993100|gb|EGD51540.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 301

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/305 (10%), Positives = 90/305 (29%), Gaps = 16/305 (5%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ-KINGELEK 74
           +     L++F +  +    S +    +  T+NGE IT+ +  K    +K Q + + +  K
Sbjct: 1   MKRKIALLLFFVFIVFLTVSCSTKKDVVATVNGENITNAEYKKAFDQVKAQIESSPQYTK 60

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
               +          ++++ +                N  ++ ++ +    K+   +   
Sbjct: 61  DIWDQDYQGKKFLDVVKENVLDSLIAQKLLVQEALKNNITVTDKEIADEYQKEKEVNKDI 120

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
            +      +  + + +++       E E+    +  K           ++          
Sbjct: 121 TKEDVKNYLLINKLFDEYTKDVKVTEEELKKYYEDNKEQFEVVKASHILV---------- 170

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK- 252
               +K  +D     ++        ++++         G         +  +F  ++   
Sbjct: 171 --ADEKTAEDIYNRLMKGEDFATLAKEYSIDTATKDQGGDLGEFPHGVMVSEFDQVVFSL 228

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
            +   + P  T  G   I       +     +K  + +     K  +   E    L   A
Sbjct: 229 KKGEISKPVKTDYGYHIIKSEGV-AIKPFNEVKDAIESYLLNDKKNQVIKEKYDALEKAA 287

Query: 313 IIHYY 317
            I  +
Sbjct: 288 KIQKF 292


>gi|50120091|ref|YP_049258.1| peptidyl-prolyl cis-trans isomerase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610617|emb|CAG74062.1| peptidyl-prolyl cis-trans isomerase D [Pectobacterium atrosepticum
           SCRI1043]
          Length = 626

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/398 (8%), Positives = 109/398 (27%), Gaps = 87/398 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ ++ +  +    ++  F +  +  Y            +NG+ IT   + + +
Sbjct: 1   MMDNLRTAANNVVLKIILALIIASFVLTGVGDYLIGGSGDY-AAKVNGQEITRAQLEQAV 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + ++                   +L + A+ +LI ETL  Q   K G+      +  
Sbjct: 60  QNERSRQQETLGENFSLLASNDGYMQQLRRQALSQLIDETLLDQYANKLGLNISDAQIKQ 119

Query: 105 FFVQ---HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK----------ND 151
                     N     E +   + + G+  + + Q L  Q     +++           +
Sbjct: 120 AIFDVPAFQTNNRFDNEKYLDQVRRLGVTPDMYAQMLRKQLTSQQLIRGFGNTAFLLPQE 179

Query: 152 FMLKYG-----------------------NLEMEIPANKQKMKNITVREYLIRTV----- 183
                                          + E+ +   + K   +     +       
Sbjct: 180 IDNLVKLAAQDRVVRVATIDIAAKAKAQTVADDEVQSYYDQNKGNFIAPEEFKVSYITLD 239

Query: 184 --------------LFSIPDNKLQNQGFVQKRIKDAEESRLRLP------------KDCN 217
                         +    +    +    +++     + +                    
Sbjct: 240 AASIMDSVKVDDKAINDFYEQNKNDYSQPERKKFSVIQVKNEAEAASVLDSLKQGGDFAA 299

Query: 218 KLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
             ++ ++  I   + G   ++ E+ +  + +      +   +    +  G   + + D +
Sbjct: 300 LAKEKSTDIISRRNGGDLGWMDENSMIDELKQAKLTEKGQVSAAIKSSVGYLIVRLDDVQ 359

Query: 277 DLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
               +    ++A ++ +    K +       +K+   A
Sbjct: 360 PQQVKPLSEVRAEIAEKVKHEKAQDGYYALQQKISEAA 397


>gi|209551115|ref|YP_002283032.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209536871|gb|ACI56806.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 293

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 84/301 (27%), Gaps = 49/301 (16%)

Query: 22  LIIFCIVPIVSYKSWAMSSR-IRTTINGEVITDGDISKRIALL---KLQKINGELEKIAV 77
           L +      V+ ++ A +   +   +    I   ++   +A L     Q  + + +  A+
Sbjct: 7   LAVLAFATFVALQAPAYADDAVIAKVGNLEIHQSELDLAVANLDPQLAQLPDDQKKVAAL 66

Query: 78  QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY 137
              I   L                               A D ++    Q        QY
Sbjct: 67  SAAIDVKLL------------------------------AADAAAEKLDQTDEFKKRMQY 96

Query: 138 LAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGF 197
           L  + +     K   +      E++   +K+        E   R +L             
Sbjct: 97  LTDRELHNAYFKKHVVDIVTPEEVKARYDKEVAALPKQEEVHARHIL-----------VK 145

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNN 256
            +   KD  +            ++ ++  +    G   Y     +  +F++      +  
Sbjct: 146 TEDEAKDIIKQLDAGKDFAELAKEKSTDPNKSEGGDLGYFSRGRMVKEFEDAAFALEKGT 205

Query: 257 TTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            +  P  T  G   I + DKRD          +  Q     +     E + K +++A I 
Sbjct: 206 YSKTPVKTDFGYHVIKVEDKRDAPP--PPFEQVQDQVRQLVMRDKYLELLNKAKASAKIE 263

Query: 316 Y 316
            
Sbjct: 264 I 264


>gi|307942651|ref|ZP_07657999.1| cell-binding factor 2 [Roseibium sp. TrichSKD4]
 gi|307774290|gb|EFO33503.1| cell-binding factor 2 [Roseibium sp. TrichSKD4]
          Length = 286

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/302 (11%), Positives = 81/302 (26%), Gaps = 48/302 (15%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI---NGELEKIA 76
            ++  F ++   S  S A    +   +    IT+ DI+     L  +       +   I 
Sbjct: 13  IMVTAFALMLGTSAVSAAEPDDVIAKVGETEITEADIAFAAQDLGQELQRFPPSQWRGIL 72

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           +  ++   L  Q    + I  D +                                    
Sbjct: 73  LDVIVDMELLAQAARDADIDKDPDFQKQL------------------------------D 102

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
           +L ++++    +         + +++   +KQ        E   R +L            
Sbjct: 103 FLTLRALRNAYIAQKIEGGVSDEDVQAAYDKQFADFEGDEEINARHILVKEKAEADAIVA 162

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
            +Q                    ++ ++     + G   + +   +   F+      +  
Sbjct: 163 ELQ-----------GGADFVELAKEKSTGPSGPNGGDLGFFVRGQMVGPFEEAAFALEPG 211

Query: 257 --TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             T  P  TQ G   I + +KR           +SA        +   + ++ L+    +
Sbjct: 212 AFTIEPVQTQFGWHVIKLEEKRKKP--KPTLEDVSAGLRQQLTRERYTKVMEDLKGYVTV 269

Query: 315 HY 316
             
Sbjct: 270 EI 271


>gi|17986407|ref|NP_539041.1| peptidyl-prolyl cis-trans isomerase [Brucella melitensis bv. 1 str.
           16M]
 gi|62290796|ref|YP_222589.1| peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 1 str.
           9-941]
 gi|82700707|ref|YP_415281.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           biovar Abortus 2308]
 gi|189025011|ref|YP_001935779.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus
           S19]
 gi|254696195|ref|ZP_05158023.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           2 str. 86/8/59]
 gi|254731113|ref|ZP_05189691.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           4 str. 292]
 gi|260546060|ref|ZP_05821800.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus
           NCTC 8038]
 gi|260758847|ref|ZP_05871195.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           4 str. 292]
 gi|260760571|ref|ZP_05872914.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           2 str. 86/8/59]
 gi|17982000|gb|AAL51305.1| peptidyl-prolyl cis-trans isomerase [Brucella melitensis bv. 1 str.
           16M]
 gi|62196928|gb|AAX75228.1| peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 1 str.
           9-941]
 gi|82616808|emb|CAJ11900.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           biovar Abortus 2308]
 gi|189020583|gb|ACD73305.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus
           S19]
 gi|260096167|gb|EEW80043.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus
           NCTC 8038]
 gi|260669165|gb|EEX56105.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           4 str. 292]
 gi|260671003|gb|EEX57824.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           2 str. 86/8/59]
          Length = 331

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 85/282 (30%), Gaps = 48/282 (17%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQ---KINGELEKIAVQELIVETLKKQEIEKSGIT 96
           S++  TING+ IT G++ +    L  Q       +    A+  LI       E EK  + 
Sbjct: 61  SKVLATINGKDITVGEVDQAAGDLDPQFARLPVEQRRLAALAALIDIKAMAGEAEKDKL- 119

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
                                         Q        ++L  +++  +  KN  + K 
Sbjct: 120 -----------------------------DQTKEFKDRMEFLRERALHNEYFKNAIVDKI 150

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
            + ++    +K+        E   R +L    +                 +      K  
Sbjct: 151 SDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA-----------IIKKLEGGAKFE 199

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT-NPYVTQKGVEYIAICD 274
           +  +  ++     S G   Y  E  + P+F+           T  P  TQ G   I + D
Sbjct: 200 DLAKASSTDGTASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLED 259

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +R           +  Q     + +   E VKKLR    I Y
Sbjct: 260 RRTKQP--PAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDY 299


>gi|254690082|ref|ZP_05153336.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           6 str. 870]
 gi|256258335|ref|ZP_05463871.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           9 str. C68]
 gi|260755622|ref|ZP_05867970.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           6 str. 870]
 gi|260884648|ref|ZP_05896262.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           9 str. C68]
 gi|297247182|ref|ZP_06930900.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           5 str. B3196]
 gi|260675730|gb|EEX62551.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           6 str. 870]
 gi|260874176|gb|EEX81245.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           9 str. C68]
 gi|297174351|gb|EFH33698.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           5 str. B3196]
          Length = 331

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 85/282 (30%), Gaps = 48/282 (17%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQ---KINGELEKIAVQELIVETLKKQEIEKSGIT 96
           S++  TING+ IT G++ +    L  Q       +    A+  LI       E EK  + 
Sbjct: 61  SKVLATINGKDITVGEVDQAAGDLDPQFARLPVEQRRLAALAALIDIKAMVGEAEKDKL- 119

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
                                         Q        ++L  +++  +  KN  + K 
Sbjct: 120 -----------------------------DQTKEFKDRMEFLRERALHNEYFKNAIVDKI 150

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
            + ++    +K+        E   R +L    +                 +      K  
Sbjct: 151 SDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA-----------IIKKLEGGAKFE 199

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT-NPYVTQKGVEYIAICD 274
           +  +  ++     S G   Y  E  + P+F+           T  P  TQ G   I + D
Sbjct: 200 DLAKASSTDGTASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLED 259

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +R           +  Q     + +   E VKKLR    I Y
Sbjct: 260 RRTKQP--PAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDY 299


>gi|148558977|ref|YP_001259765.1| peptidyl-prolyl cis-trans isomerase [Brucella ovis ATCC 25840]
 gi|148370234|gb|ABQ60213.1| peptidyl-prolyl cis-trans isomerase [Brucella ovis ATCC 25840]
          Length = 331

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 85/282 (30%), Gaps = 48/282 (17%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQ---KINGELEKIAVQELIVETLKKQEIEKSGIT 96
           S++  TING+ IT G++ +    L  Q       +    A+  LI       E EK  + 
Sbjct: 61  SKVLATINGKDITVGEVDQAAGDLDPQFARLPVEQRRLAALAALIDIKAMAGEAEKDKL- 119

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
                                         Q        ++L  +++  +  KN  + K 
Sbjct: 120 -----------------------------DQTKEFKDRMEFLRERALHNEYFKNAIVDKI 150

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
            + ++    +K+        E   R +L    +                 +      K  
Sbjct: 151 SDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA-----------IIKKLEGGAKFE 199

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT-NPYVTQKGVEYIAICD 274
           +  +  ++     S G   Y  E  + P+F+           T  P  TQ G   I + D
Sbjct: 200 DLAKASSTDGTASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLED 259

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +R           +  Q     + +   E VKKLR    I Y
Sbjct: 260 RRTKQP--PAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDY 299


>gi|197116615|ref|YP_002137042.1| peptidylprolyl cis-trans isomerase lipoprotein, PpiC-type
           [Geobacter bemidjiensis Bem]
 gi|197085975|gb|ACH37246.1| peptidylprolyl cis-trans isomerase lipoprotein, PpiC-type
           [Geobacter bemidjiensis Bem]
          Length = 324

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/311 (14%), Positives = 87/311 (27%), Gaps = 53/311 (17%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSR-------IRTTINGEVITDGDISKRIA----LLKL 65
           T   +L+  C+      +     ++       +   +NG  ITD D  K  A     LK 
Sbjct: 6   TAAVLLLALCVAATGCKQKAESEAKKGPGNGIVLAEVNGAKITDNDFYKEQAALPPYLKP 65

Query: 66  QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
                E +K  +  ++V  L  Q+ +K GI   +                          
Sbjct: 66  MTETPEGKKEMLDTMVVRELILQQSKKEGIDSSAEVAAKL-------------------- 105

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
                     + L  + I    +K          + ++ A  +K K        IR    
Sbjct: 106 ----------EDLKKRVIVEAFLKKKVEESGNISDADMKAFYEKNKEKFQSGAQIRASHI 155

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ 245
            +                       +        +K +        G   +  +  + P 
Sbjct: 156 LVKSEAEAKDIQ---------NQLKKGASFEELAKKHSIDGAAQKGGDLGWFSKGSMIPD 206

Query: 246 FQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEA 302
           F+ +     +  T+    TQ G   I     R  G      +K  + A   P + ++   
Sbjct: 207 FEKVAFGLKEGETSGIVKTQFGYHIIKKTGDRPAGARSFEDVKDQIKAAMVPERQQETFK 266

Query: 303 EYVKKLRSNAI 313
           +   +L+ NA 
Sbjct: 267 KLKDELKKNAK 277


>gi|317402408|gb|EFV82980.1| chaperone surA [Achromobacter xylosoxidans C54]
          Length = 517

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/289 (9%), Positives = 80/289 (27%), Gaps = 37/289 (12%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI--------NGELEKIAVQEL 80
                        I   ++ +VIT  ++      +  +          +  L+   +Q L
Sbjct: 42  SAPPAAGEQFVDGIAAVVDKDVITLRELRDASQRIAGELKARGIQVPDDKTLQHQVLQRL 101

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I+E +++ E ++ GI  D   V+      A    ++       ++K G+  + +++ L  
Sbjct: 102 IMERVQRHEADRLGIRVDDAQVDQAIATIAGRNKITVAQLRQEIEKSGVNWDSYRKSLKD 161

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI-------------------- 180
           +     + +          + E+ A  +  +                             
Sbjct: 162 EIRSDRLRQRAVDSNIVISDAEVDAFLKDQRRNPAFAAAPQQAQPQPQPEAAPEQAAAPA 221

Query: 181 --------RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
                   + ++     +  +    ++K+ +D      R     +     +     +  G
Sbjct: 222 GPMLYAVAQILVRVPEGSSPEQLAALRKKAEDLLARVKRGDDFASLAAASSDGPEALQGG 281

Query: 233 KAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
                        F + +    +   +    +  G   + + D+     
Sbjct: 282 VMGVRPLDGWPDLFAKAIANLQKGQISGLLQSGNGFHILKVMDRGTAQP 330



 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 15/140 (10%), Positives = 43/140 (30%), Gaps = 2/140 (1%)

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
                  +       + ++   Q+  +  +       K  +   +++        G   +
Sbjct: 363 MQTHARHILIKTSTVMSDEQARQRLEQVRQRLVAGDAKFDDMARQYSQDATAPQGGDLGW 422

Query: 237 LLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD-LGGEIALKAYLSAQNTP 294
           L   +  P F+  +        + P  T  G   I + ++R     +   +         
Sbjct: 423 LNPGETVPPFEAAMNALKPGEISQPIQTPFGWHLIQVEERRQHDATDDLARMKARQTLFE 482

Query: 295 TKIEKHEAEYVKKLRSNAII 314
            + +    +++ +LR+ A I
Sbjct: 483 RRAQPAFEDWLDQLRAQAYI 502


>gi|269467952|gb|EEZ79687.1| parvulin-like peptidyl-prolyl isomerase [uncultured SUP05 cluster
           bacterium]
          Length = 298

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 108/298 (36%), Gaps = 11/298 (3%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVE 83
           +  ++ I S  S A  + I   +N ++IT   IS  I     ++    L    +   I  
Sbjct: 4   LLLLIFIWSLNSLASPNSIIAIVNDDLITFDKISSEIKTSSTKEQKLAL----INRQIDL 59

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            L+ Q++++ G+   +N +N    + A    L+     +      I +N   Q       
Sbjct: 60  ALQLQKVKEVGVIPKNNAINIALKKVASQNNLTLTQLKNLPQFGEIVENITNQLSLRGLK 119

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL---QNQGFVQK 200
              + K +  L    +   +  N    K +  +  + +  + SI             +++
Sbjct: 120 QVVLKKANVKLTQVEISDALKKNSNDSKKLKQQIKIAQIAISSIDQTNSLLQSKDELIKQ 179

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTN 259
            + D  +         +  + ++      + G++ +L +  L P F+       +N  + 
Sbjct: 180 FLLDLSDKINNGTSFSSLAKLYSQDPSYKNGGESGWLDKDRLPPIFKQNLQGLKKNELSK 239

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           P+ T +G   I   +KR++       A + AQ    K       +VK LR  A I  +
Sbjct: 240 PFKTAQGWRIIKNINKRNV---DTHLASIKAQLIQKKKNTFFNSWVKGLREKAYIEIF 294


>gi|317153442|ref|YP_004121490.1| SurA domain-containing protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316943693|gb|ADU62744.1| SurA domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 312

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/319 (15%), Positives = 123/319 (38%), Gaps = 24/319 (7%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL------- 65
           +      F+ +   +    S    ++  +I   +N ++IT  ++ + +  +         
Sbjct: 1   MPRCIFLFISLFLLVFSTNSLAVESVYDKILVKVNEDIITQYELDEEMRPILASIKGREL 60

Query: 66  ----QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
               ++   +L +  +  ++ + L  QEI+K  IT     ++    +     GL+ E F 
Sbjct: 61  NEAEREQLADLRRQTLDRMVNDLLMTQEIKKFQITVTDTVIDDEIRRMKEERGLTDEAFE 120

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
             + + G+    F+  L       +++      K    + EI A  +  ++  + E ++ 
Sbjct: 121 EMVKRDGLTIQEFRSKLKGLIEKQELLGYMVHSKVVVTDSEIEAEYEARRDNYLLEKMVG 180

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             +  +P +       V+KRI D E +  +       + K++      S G    +  +D
Sbjct: 181 LAILVLPADVSA--LEVRKRIMDGELTFDQ------AVLKYSVGPATDSGGSIGEVNWAD 232

Query: 242 LHPQFQNLLK-KSQNNTTNPYVTQKGVEYIA---ICDKRDLGGEIALKAYLSAQNTPTKI 297
           L   +++ ++   Q     P   +  +  ++   I   R +  E  ++  +  +    K 
Sbjct: 233 LADDWRDSIEGVKQGGVGTPVEVRGQMALLSPVTIASDRLVPLEE-VRDAIFERLMEGKR 291

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           E    EY +KL+ +++I Y
Sbjct: 292 ETIFDEYFEKLKQSSVITY 310


>gi|78045210|ref|YP_359073.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997325|gb|ABB16224.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 337

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/334 (11%), Positives = 94/334 (28%), Gaps = 37/334 (11%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL-------- 65
           K+     VL+ F +  IV+             +NG+ I+  D  +R A ++         
Sbjct: 3   KITRVVAVLLTFVLALIVAGCG-----DYVAKVNGKTISKKDFDRRFAQVQADMKLRGVD 57

Query: 66  ------QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                 QK+   L++  + ++I E L  +  ++  I    + +     +         + 
Sbjct: 58  LTSTEGQKMLQSLKQQTLDQMINEILISEYGKEKKIEPTKDEITNKINEIRAQFPSPQDF 117

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
             +  D+     +  +             +    +     E++    K K +        
Sbjct: 118 EKALKDRNITDKDLQEMVRVQLINDKIYNEVTKGITVSEQEVKEYYEKHKNEPDFQTPEQ 177

Query: 180 IRTVL-------------FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
            +                     N  +     +K  ++  +            ++ +   
Sbjct: 178 RQVRHILIAVNDGNAQNNPHFNINVKRTDAEAKKLAEELIKQIKAGKDFATLAKEKSDDP 237

Query: 227 HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTN-PYVTQKGVEYIAICDKRDL--GGE 281
                G        ++  +F++     K   + T  P  T  G   I +           
Sbjct: 238 GVKENGGQYTFSRGEMVKEFEDAAFALKKPGDITETPVKTAFGYHIIKLEKIIPARQKTY 297

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             +K  L       K  +   ++++ L+  A I 
Sbjct: 298 EEVKEQLKNYLLEKKKREAYNKFLEDLKKKAKIE 331


>gi|306843392|ref|ZP_07475993.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. BO1]
 gi|306276083|gb|EFM57783.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. BO1]
          Length = 331

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 85/282 (30%), Gaps = 48/282 (17%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQ---KINGELEKIAVQELIVETLKKQEIEKSGIT 96
           S++  TING+ IT G++ +    L  Q       +    A+  LI       E EK  + 
Sbjct: 61  SKVLATINGKDITVGEVDQAAGDLDPQFSRLPVEQRRLAALAALIDIKAMAGEAEKDKL- 119

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
                                         Q        ++L  +++  +  KN  + K 
Sbjct: 120 -----------------------------DQTKEFKDRMEFLRERALHNEYFKNAIVDKI 150

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
            + ++    +K+        E   R +L    +                 +      K  
Sbjct: 151 SDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA-----------IIKKLEGGAKFE 199

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT-NPYVTQKGVEYIAICD 274
           +  +  ++     S G   Y  E  + P+F+           T  P  TQ G   I + D
Sbjct: 200 DLAKASSTDGTASSGGDLGYFTEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLED 259

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +R           +  Q     + +   E VKKLR    I Y
Sbjct: 260 RRTKQP--PAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDY 299


>gi|53804280|ref|YP_114087.1| peptidyl-prolyl cis-trans isomerase family protein [Methylococcus
           capsulatus str. Bath]
 gi|53758041|gb|AAU92332.1| peptidyl-prolyl cis-trans isomerase family protein [Methylococcus
           capsulatus str. Bath]
          Length = 325

 Score =  101 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 80/280 (28%), Gaps = 50/280 (17%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              +NG  IT  ++    + L  ++     E+  V EL+   L +Q+     +T +    
Sbjct: 46  VAVVNGTAITKAEVGAIKSELAQRRSGEVSEEKIVDELVKRELLRQDAVAKQLTKNPEYQ 105

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                               A + I   +   DFM      + E
Sbjct: 106 ARI-------------------------------DNAERVILSQIAAEDFMKNLTISDEE 134

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +            R       +    ++  ++                +  K  +  +KF
Sbjct: 135 LQKEYDSRIGAMQRAEYRARHILVDKEDVAKDI----------IAKLGKGAKFEDLAKKF 184

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDKRD-- 277
           +     +   G+  +     +   F + + K      T  P  TQ G   I   + R+  
Sbjct: 185 SKDPGSNNEGGELGWFSPQQMVQPFSEAVEKLKNGEITQVPVQTQFGWHVIQREESRESA 244

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
                A+K  + +     K+ +    Y+  L + A +  +
Sbjct: 245 PPAFDAVKEQIKSMLQTQKLHQ----YIDDLMAKAKVERF 280


>gi|306842909|ref|ZP_07475545.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. BO2]
 gi|306286932|gb|EFM58452.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. BO2]
          Length = 331

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 85/282 (30%), Gaps = 48/282 (17%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQ---KINGELEKIAVQELIVETLKKQEIEKSGIT 96
           S++  TING+ IT G++ +    L  Q       +    A+  LI       E EK  + 
Sbjct: 61  SKVLATINGKDITVGEVDQAAGDLDPQFARLPVEQRRLAALAALIDIKAMAGEAEKDKL- 119

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
                                         Q        ++L  +++  +  KN  + K 
Sbjct: 120 -----------------------------DQTKEFKDRMEFLRERALHNEYFKNAIVDKI 150

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
            + ++    +K+        E   R +L    +                 +      K  
Sbjct: 151 SDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA-----------IIKKLEGGAKFE 199

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT-NPYVTQKGVEYIAICD 274
           +  +  ++     S G   Y  E  + P+F+           T  P  TQ G   I + D
Sbjct: 200 DLAKASSTDGTASSGGDLGYFTEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLED 259

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +R           +  Q     + +   E VKKLR    I Y
Sbjct: 260 RRTKQP--PAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDY 299


>gi|262375382|ref|ZP_06068615.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter lwoffii SH145]
 gi|262309636|gb|EEY90766.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter lwoffii SH145]
          Length = 440

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/317 (8%), Positives = 99/317 (31%), Gaps = 21/317 (6%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN 69
           +  +K +     L +     + ++        +   ++  +I   D+++ +A +  Q   
Sbjct: 8   TKQLKQIFKATALALCLSSAMTTFAVAQPKDEVVAVVDNSIILRSDLAQGVAEISHQLQK 67

Query: 70  GE--------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS--AED 119
            +        LE+ A+++LI+   + +++++  I  D   +N   ++ AR++G       
Sbjct: 68  QKKAVPPQQYLEQQALEQLIIRQAQLEQVKRYNIRPDEKALNEAVLKVARDSGSPSLEAF 127

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
                          +  +A       + +     +    + ++       +   +    
Sbjct: 128 QQKLDAMAPNTYASLRNRIAEDLALNRLRQQIVTSRIQITDQDVKNFLNTPQGQALLGSQ 187

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
           +  +          +    ++     ++            +K+++    V          
Sbjct: 188 VHVLH------LRVSGENAEQIATQVKQELNSSNDIQAIGKKYSTGGVKVEAADMGVRNL 241

Query: 240 SDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTP 294
           S++  +    +       T+       GV  + + +++           L  ++  Q + 
Sbjct: 242 SEIPAELAARVTTLQPGQTSELIPVADGVHVLKLLERKGGEQKALVPQYLTRHILIQPSE 301

Query: 295 TKIEKHEAEYVKKLRSN 311
               ++  + +  L + 
Sbjct: 302 VVSPENAKQMIDSLYNR 318



 Score = 84.7 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/269 (11%), Positives = 87/269 (32%), Gaps = 8/269 (2%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           ITD D+   +   + Q + G  +   +   +     +Q   +     +S+       +  
Sbjct: 166 ITDQDVKNFLNTPQGQALLGS-QVHVLHLRVSGENAEQIATQVKQELNSSNDIQAIGKKY 224

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
              G+  E     +             +    + P        +  G   +++   K   
Sbjct: 225 STGGVKVEAADMGVRNLSEIPAELAARVTT--LQPGQTSELIPVADGVHVLKLLERKGGE 282

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDV 229
           +   V +YL R +L     +++ +    ++ I        +          F++      
Sbjct: 283 QKALVPQYLTRHILIQP--SEVVSPENAKQMIDSLYNRLKQGEDFTVLASTFSNDTGSAR 340

Query: 230 SIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
             G   ++    + P+F+  +K +     + P+ +Q G   + + + R        +  +
Sbjct: 341 DGGSLGWVSPGVMVPEFEQQMKSTPVGQFSKPFQSQFGWHILQVSETRQQDMTQEYQERM 400

Query: 289 -SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                +  + +     ++++ R+NA +  
Sbjct: 401 ARQLLSERQFDAELDSWLRETRNNAYVEI 429


>gi|23502793|ref|NP_698920.1| peptidyl-prolyl cis-trans isomerase [Brucella suis 1330]
 gi|163843966|ref|YP_001628370.1| parvulin-like PPIase precursor [Brucella suis ATCC 23445]
 gi|23348814|gb|AAN30835.1| peptidyl-prolyl cis-trans isomerase [Brucella suis 1330]
 gi|163674689|gb|ABY38800.1| Parvulin-like PPIase precursor [Brucella suis ATCC 23445]
          Length = 331

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 85/282 (30%), Gaps = 48/282 (17%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQ---KINGELEKIAVQELIVETLKKQEIEKSGIT 96
           S++  TING+ IT G++ +    L  Q       +    A+  LI       E EK  + 
Sbjct: 61  SKVLATINGKDITVGEVDQAAGDLDPQFARLPVEQRRLAALAALIDIKAMAGEAEKDKL- 119

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
                                         Q        ++L  +++  +  KN  + K 
Sbjct: 120 -----------------------------DQTKEFKDRMEFLRERALHNEYFKNAIVDKI 150

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
            + ++    +K+        E   R +L    +                 +      K  
Sbjct: 151 SDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA-----------IIKKLEGGAKFE 199

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT-NPYVTQKGVEYIAICD 274
           +  +  ++     S G   Y  E  + P+F+           T  P  TQ G   I + D
Sbjct: 200 DLAKASSTDGTASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLED 259

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +R           +  Q     + +   E VKKLR    I Y
Sbjct: 260 RRTKQP--PAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDY 299


>gi|83953128|ref|ZP_00961850.1| PPIC-type PPIASE domain protein [Sulfitobacter sp. NAS-14.1]
 gi|83842096|gb|EAP81264.1| PPIC-type PPIASE domain protein [Sulfitobacter sp. NAS-14.1]
          Length = 280

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 74/281 (26%), Gaps = 50/281 (17%)

Query: 38  MSSRIRTTINGEVITD-GDISKRIAL--LKLQKINGELEKIAVQELIVETLKKQEIEKSG 94
            +  +  T+NG  IT    I  R  L     Q     L K  + +L+ +T          
Sbjct: 26  TAETVVATVNGTDITIGSMIIARATLPEQYQQLPPEVLFKGILDQLVQQTAL-------- 77

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
                                       F  +         +    Q I  +V++     
Sbjct: 78  -------------------------SQDFDGEVPKRIEMALENERRQLIAGEVIEKAMAQ 112

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
                E++   ++         E+    +L              ++  +  ++       
Sbjct: 113 DVTEEELQAAYDEAYADAEPTEEFSASHIL-----------VETEEEAQAVKKELDEGAD 161

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAIC 273
                ++ ++     + G   +     + P F+  +        + P  TQ G   I + 
Sbjct: 162 FAELAKEKSTGPSGPAGGTLGWFGPGMMVPAFETAVAALEVGAVSEPVETQFGWHVIKLD 221

Query: 274 DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           DKR    E      +  +      +      ++K    A +
Sbjct: 222 DKRQK--EAPKLEDVKDELETQVRQVKAQTLIEKTTEAADV 260


>gi|161619861|ref|YP_001593748.1| chaperone surA precursor [Brucella canis ATCC 23365]
 gi|254704953|ref|ZP_05166781.1| chaperone surA precursor [Brucella suis bv. 3 str. 686]
 gi|260567571|ref|ZP_05838041.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 4
           str. 40]
 gi|261755654|ref|ZP_05999363.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 3
           str. 686]
 gi|161336672|gb|ABX62977.1| Chaperone surA precursor [Brucella canis ATCC 23365]
 gi|260157089|gb|EEW92169.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 4
           str. 40]
 gi|261745407|gb|EEY33333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 3
           str. 686]
          Length = 331

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 85/282 (30%), Gaps = 48/282 (17%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQ---KINGELEKIAVQELIVETLKKQEIEKSGIT 96
           S++  TING+ IT G++ +    L  Q       +    A+  LI       E EK  + 
Sbjct: 61  SKVLATINGKDITVGEVDQAAGDLDPQFARLPVEQRRLAALAALIDIKAMAGEAEKDKL- 119

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
                                         Q        ++L  +++  +  KN  + K 
Sbjct: 120 -----------------------------DQTKEFKDRMEFLRERALHNEYFKNAIVDKI 150

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
            + ++    +K+        E   R +L    +                 +      K  
Sbjct: 151 SDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA-----------IIKKLEGGAKSE 199

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT-NPYVTQKGVEYIAICD 274
           +  +  ++     S G   Y  E  + P+F+           T  P  TQ G   I + D
Sbjct: 200 DLAKASSTDGTASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLED 259

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +R           +  Q     + +   E VKKLR    I Y
Sbjct: 260 RRTKQP--PAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDY 299


>gi|149917238|ref|ZP_01905737.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Plesiocystis
           pacifica SIR-1]
 gi|149821845|gb|EDM81239.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Plesiocystis
           pacifica SIR-1]
          Length = 441

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 89/306 (29%), Gaps = 37/306 (12%)

Query: 43  RTTINGEVITDGDISKRIALLKLQ-----------KINGELEKIAVQELIVETLKKQEIE 91
              +N  VIT G++   I  LKLQ             +    K  V  LI + + +QE +
Sbjct: 46  VAKVNDVVIT-GELFHSIYDLKLQKYADRNRDIPKTADRRYRKSIVDRLIYQEILRQEAK 104

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
           K               Q         +D+   L ++G  +   +Q    + +   V++ D
Sbjct: 105 KR----SIAYDKAELQQREDAQKRGIKDWEKHLRRRGESEESLRQLYVAELLERAVLEAD 160

Query: 152 FMLKYGNLEME-IPANKQKMKNITVREYLIRTVLFSIPDNKLQ----------------- 193
             L   + E+       +            R +L  +   +                   
Sbjct: 161 GKLAVTDEEIAGEYEKVKPNYTKDKERVRARHILIRVGPEQKPAPGEPVPEPTEAQKKEW 220

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK- 252
            +  ++K  +   ++            + +        G         +  +F +     
Sbjct: 221 EEAALKKAEEIYAKASAEGADFAQLAIELSEGPSARKGGDLGIFAADRMVEEFSDAAFTL 280

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
                + P  T+ G   I +  K   G     AL+  L  + +  K+ +   +  + L  
Sbjct: 281 EPGEVSKPVKTKFGFHIIKVEGKYAPGELPIEALEDQLRERLSARKLHQGRRDLKESLLE 340

Query: 311 NAIIHY 316
           +  +  
Sbjct: 341 SYAVEN 346


>gi|225853381|ref|YP_002733614.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           ATCC 23457]
 gi|254694570|ref|ZP_05156398.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           3 str. Tulya]
 gi|254700583|ref|ZP_05162411.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 5
           str. 513]
 gi|254707533|ref|ZP_05169361.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
           pinnipedialis M163/99/10]
 gi|254713643|ref|ZP_05175454.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
           M644/93/1]
 gi|254716003|ref|ZP_05177814.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
           M13/05/1]
 gi|256045546|ref|ZP_05448429.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|256112274|ref|ZP_05453195.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 3 str. Ether]
 gi|256158440|ref|ZP_05456338.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
           M490/95/1]
 gi|256253860|ref|ZP_05459396.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti B1/94]
 gi|256263138|ref|ZP_05465670.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 2 str. 63/9]
 gi|256370345|ref|YP_003107856.1| peptidyl-prolyl cis-trans isomerase [Brucella microti CCM 4915]
 gi|260169365|ref|ZP_05756176.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. F5/99]
 gi|260562856|ref|ZP_05833342.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 1 str. 16M]
 gi|261214896|ref|ZP_05929177.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           3 str. Tulya]
 gi|261217772|ref|ZP_05932053.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
           M13/05/1]
 gi|261220998|ref|ZP_05935279.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti B1/94]
 gi|261315013|ref|ZP_05954210.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
           pinnipedialis M163/99/10]
 gi|261321380|ref|ZP_05960577.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
           M644/93/1]
 gi|261751092|ref|ZP_05994801.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 5
           str. 513]
 gi|261758885|ref|ZP_06002594.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. F5/99]
 gi|265991973|ref|ZP_06104530.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|265993706|ref|ZP_06106263.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 3 str. Ether]
 gi|265996958|ref|ZP_06109515.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
           M490/95/1]
 gi|294851184|ref|ZP_06791857.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. NVSL
           07-0026]
 gi|225641746|gb|ACO01660.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           ATCC 23457]
 gi|256000508|gb|ACU48907.1| peptidyl-prolyl cis-trans isomerase [Brucella microti CCM 4915]
 gi|260152872|gb|EEW87964.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 1 str. 16M]
 gi|260916503|gb|EEX83364.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           3 str. Tulya]
 gi|260919582|gb|EEX86235.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti B1/94]
 gi|260922861|gb|EEX89429.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
           M13/05/1]
 gi|261294070|gb|EEX97566.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
           M644/93/1]
 gi|261304039|gb|EEY07536.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
           pinnipedialis M163/99/10]
 gi|261738869|gb|EEY26865.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. F5/99]
 gi|261740845|gb|EEY28771.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 5
           str. 513]
 gi|262551426|gb|EEZ07416.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
           M490/95/1]
 gi|262764687|gb|EEZ10608.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 3 str. Ether]
 gi|263003039|gb|EEZ15332.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|263093040|gb|EEZ17190.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 2 str. 63/9]
 gi|294819773|gb|EFG36772.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. NVSL
           07-0026]
 gi|326409944|gb|ADZ67009.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           M28]
 gi|326539657|gb|ADZ87872.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           M5-90]
          Length = 331

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 85/282 (30%), Gaps = 48/282 (17%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQ---KINGELEKIAVQELIVETLKKQEIEKSGIT 96
           S++  TING+ IT G++ +    L  Q       +    A+  LI       E EK  + 
Sbjct: 61  SKVLATINGKDITVGEVDQAAGDLDPQFARLPVEQRRLAALAALIDIKAMAGEAEKDKL- 119

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
                                         Q        ++L  +++  +  KN  + K 
Sbjct: 120 -----------------------------DQTKEFKDRMEFLRERALHNEYFKNAIVDKI 150

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
            + ++    +K+        E   R +L    +                 +      K  
Sbjct: 151 SDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA-----------IIKKLEGGAKFE 199

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT-NPYVTQKGVEYIAICD 274
           +  +  ++     S G   Y  E  + P+F+           T  P  TQ G   I + D
Sbjct: 200 DLAKASSTDGTASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLED 259

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +R           +  Q     + +   E VKKLR    I Y
Sbjct: 260 RRTKQP--PAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDY 299


>gi|149202954|ref|ZP_01879925.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseovarius sp.
           TM1035]
 gi|149143500|gb|EDM31536.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseovarius sp.
           TM1035]
          Length = 283

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/303 (12%), Positives = 76/303 (25%), Gaps = 52/303 (17%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWA-MSSRIRTTINGEVITDGDISKRIALLKLQK---INGE 71
           L +   L+    +   ++      +  +  T+ G  IT G +    A L  Q        
Sbjct: 5   LLSTAALVSGLAIGAQAFAQDTPSAETVMATVGGTDITLGHMLAVRASLPAQYDQVPPEA 64

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           L K  + +LI + L  Q  E                                        
Sbjct: 65  LFKGVLDQLIQQELLSQAHEGDLSR---------------------------------AA 91

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
               +      +  DV +           ++   + Q        EY    +L       
Sbjct: 92  ALQLENERRAVLAADVAEEVVNADLTEERLQAAYDAQYAGAEDETEYKAAHIL------- 144

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL-HPQFQNLL 250
                  ++  ++               ++ +      S G   +  +  +    F  + 
Sbjct: 145 ----VETEEAAQNLVIELEGGANFAALAQEHSIGPSGPSGGDLGWFGDGVMVPEFFAAVA 200

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
                  + P  TQ G   I + + R    E      +  + T T  ++    ++   R 
Sbjct: 201 ALDVGAVSAPIQTQFGWHVIQLNETR--IKERPTLDGVRDELTNTLRQEAFDAFIAA-RE 257

Query: 311 NAI 313
            A 
Sbjct: 258 AAT 260


>gi|283856448|ref|YP_163047.2| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|283775452|gb|AAV89936.2| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
           subsp. mobilis ZM4]
          Length = 435

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/291 (16%), Positives = 97/291 (33%), Gaps = 21/291 (7%)

Query: 44  TTINGEVITDGDISKRIALLKLQ----------KINGELEKIAVQELIVETLKKQEIEKS 93
             +NG +IT+ DI +R AL+             +         ++ LI ETL+ QE + +
Sbjct: 37  AIVNGTIITNTDIEQRFALILASAGGDVSRISEEDRNMARLQILRNLIDETLEIQEAKAN 96

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
            I      ++  F  +ARN   + E FS+ L   G      K+ +     W  ++     
Sbjct: 97  DIIITPTELDQIFEHYARNMKKTPEAFSADLQAIGSSAKSVKRQVEADMAWRRLLGRRVE 156

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL--- 210
                   E+     +MK    ++      +F   ++  + +   +      +  +    
Sbjct: 157 PFVNISNEEVQNIINRMKAAKGKDEYHIAEIFFSANDTNRAEVRAKANKIQDQILQRGNT 216

Query: 211 --RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGV 267
             R+        +++        G   ++    L      ++K     +   P  T  G 
Sbjct: 217 NERMGLFSAFASQYSEASSAARGGDMGFIQAEQLPDALAAVVKNMPVGSLMGPIETPGGF 276

Query: 268 EYIAICDKRDLGGEIALKAYLSAQNTPTKI-----EKHEAEYVKKLRSNAI 313
             +A+ +K+ + G     A ++ +           +    E   KLR    
Sbjct: 277 SIVALLEKQQILGIDPKDAIVALKQIYVNFPPGTSQNVADEKTAKLRDATK 327



 Score = 45.8 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 237 LLESDLHPQFQNLLKK-SQNNTTNPYVT-QKGVEYIAICDKRDLGG-EIALKAYLSAQNT 293
           +    + P  QN++ K     +T P+ + Q+GV  + +C + D    +      +  Q  
Sbjct: 352 ISIRSMPPLLQNMVAKLQVGESTLPFGSIQEGVSVLVVCGRDDPKVAKQPNFQQIHNQLQ 411

Query: 294 PTKIEKHEAEYVKKLRSNAIIHY 316
             ++ K    Y++ LR +AII Y
Sbjct: 412 EDRVNKRAIRYLRDLRRDAIIDY 434


>gi|254503520|ref|ZP_05115671.1| SurA N-terminal domain family [Labrenzia alexandrii DFL-11]
 gi|222439591|gb|EEE46270.1| SurA N-terminal domain family [Labrenzia alexandrii DFL-11]
          Length = 314

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/278 (21%), Positives = 110/278 (39%), Gaps = 3/278 (1%)

Query: 42  IRTTINGEVITDGDISKRIALLKLQKINGE--LEKIAVQELIVETLKKQEIEKSGITFDS 99
           I+  +N   ITD DI++R  L+ L          + AVQELI + +K  E  + G++   
Sbjct: 36  IKVIVNDVPITDYDITQRARLITLTLRKSASVARREAVQELIDDQVKVGEATRMGMSVSD 95

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
           + V+  +   ARN  L+    +  L + G+     K+ L  Q IW  +V+  F       
Sbjct: 96  SEVDNAYANIARNVKLTPARLTQALGQGGVRAETLKKRLRAQLIWGKLVRARFSGGVDVD 155

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
           E +I A  +K         +   +   I      +    + + +       +    C  +
Sbjct: 156 ESDIIAALRKTDEEDRATSIEYDLQRVIVVVPKNSSNGFKSQRRREIAQMRKAVSSCEDM 215

Query: 220 EKFASKIHDVSIGKAQYLLESDLHP-QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
                +  +V +      LE+++ P     + K      T+P  T  G E IAIC KR++
Sbjct: 216 GSVLGQYKEVVVQPIGRRLETEIPPNIIDQVKKLGPGKLTDPNPTPVGFEMIAICGKREI 275

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             +IA++  L  +    + E      +   +  + I Y
Sbjct: 276 QSDIAMRTKLENELRAKEGESQARRLLMDAKRRSTIIY 313


>gi|218960354|ref|YP_001740129.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor
           [Candidatus Cloacamonas acidaminovorans]
 gi|167729011|emb|CAO79922.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor
           [Candidatus Cloacamonas acidaminovorans]
          Length = 418

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 92/290 (31%), Gaps = 16/290 (5%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKL--QKINGELEKIAVQELIVETLKKQEIEK 92
           S  +  +I   +  ++I   D+ K +  ++           +  + E+I + L  Q+ + 
Sbjct: 18  SAELIDKIVAKVGTDIILLSDLQKEMVQMQSVGLLEEDTDPRDVLDEMINQKLIIQKAKD 77

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH-------FKQYLAIQSIWP 145
             IT +   +      + +         S+F                 ++  L  Q++  
Sbjct: 78  LNITVNDEEIKVMAENYLKKVKAQYPSSSAFAADLKKSKLTESDLLQLYRDILTEQALSD 137

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNIT--VREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
            ++K + + K    E E+       K+            ++F       +++      IK
Sbjct: 138 QILKKEIINKVSVTEAEVINFYNATKDSLAVKPVSWDLGIIFREIKPNQKSKEAKLAEIK 197

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYV 262
           + +                +        G   +     +   F++     Q    ++   
Sbjct: 198 EIQTRLKNGEDFATLASTESDCPSKEVGGDLGFFKRGQMVKPFEDAAFALQLGEISDIVE 257

Query: 263 TQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEA-EYVKKLRSN 311
           ++ G   I + +KR   G      ++    TPT  +     + ++++R+ 
Sbjct: 258 SEYGYHIIRLEEKR---GNEIRARHILKALTPTAEDSLRERQLMEEIRNR 304



 Score = 58.9 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/276 (10%), Positives = 77/276 (27%), Gaps = 7/276 (2%)

Query: 45  TINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
            IN   +T+ ++   I      K +  ++ ++    I+    K   +             
Sbjct: 144 IINKVSVTEAEV---INFYNATKDSLAVKPVSWDLGIIFREIKPNQKSKEAKLAEIKEIQ 200

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
             +++  +    A   S    K+  GD  F +   +   + D      + +  ++     
Sbjct: 201 TRLKNGEDFATLASTESDCPSKEVGGDLGFFKRGQMVKPFEDAAFALQLGEISDIVESEY 260

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
                         +    +        ++    ++ +++      +     +   +++ 
Sbjct: 261 GYHIIRLEEKRGNEIRARHILKALTPTAEDSLRERQLMEEIRNRYAKGESFASLAREYSM 320

Query: 225 KI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG---G 280
                   G      E DL   F   + ++      P +  +G+ YI    K        
Sbjct: 321 DQESREDGGSLGEFTERDLPSLFATQILQTPVGEMTPVLENQGMLYIFCRLKEYPPRIYK 380

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
              +K          K       +++ LR  A +  
Sbjct: 381 YEEVKDQAREMVLKRKQIDAFNAWIENLRREAYVQI 416


>gi|262166048|ref|ZP_06033785.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio mimicus VM223]
 gi|262025764|gb|EEY44432.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio mimicus VM223]
          Length = 619

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/403 (7%), Positives = 92/403 (22%), Gaps = 91/403 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + +Y   +  +     +    I+ GD  +  
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYL-ISGGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                       K  +  ++ + L +Q     G+    + V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDDQVRQ 119

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN----------- 150
                 Q         E + + L + G   + F +YL    +   ++             
Sbjct: 120 MILEMPQFQSQGKFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMTALQGSEFSLPGE 179

Query: 151 ----------------------DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL---- 184
                                 +F  K    + +I    +       R   ++       
Sbjct: 180 VNLQDQLISQTRDIRTITLSLAEFAKKVTLSDEDIEQYYKANTERFTRPEQVKVSYVELS 239

Query: 185 ---------------FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK----------- 218
                                 L      ++R            +               
Sbjct: 240 ADALKAEIAIDDEAAQQYYHEHLDKYSSAEQRKVSHILIEGDDEQKAQAILDELNAGADF 299

Query: 219 ---LEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               ++ +  +      G   ++    + P F+        +   +    +  G   I +
Sbjct: 300 TTVAKEKSQDVGSAQDGGSLGWIERDTMDPAFEAAAYALTEKGQISGLVKSDFGYHIIRL 359

Query: 273 CDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            D +   +     +   +  +    +          +L   A 
Sbjct: 360 DDVKAPVVKPYTEVAQAIKQELVDQQALDSFYAKQSELEKLAF 402


>gi|258621306|ref|ZP_05716340.1| peptidyl-prolyl cis-trans isomerse D [Vibrio mimicus VM573]
 gi|258586694|gb|EEW11409.1| peptidyl-prolyl cis-trans isomerse D [Vibrio mimicus VM573]
          Length = 619

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/403 (7%), Positives = 98/403 (24%), Gaps = 91/403 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + +Y   +  +     +    I+ GD  +  
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYL-ISGGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                       K  +  ++ + L +Q     G+    + V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDDQVRQ 119

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN----------- 150
                 Q         E + + L + G   + F +YL    +   ++             
Sbjct: 120 MILEMPQFQSQGKFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMTALQGSEFSLPGE 179

Query: 151 ----------------------DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                 +F  K    + +I    +       R   ++     + 
Sbjct: 180 VNLQDQLISQTRDIRTLTLSLAEFAKKVTLSDEDIEQYYKANTERFTRPEQVKVSYVELS 239

Query: 189 DNKLQNQGFV---------------------------------QKRIKDAEESRLRLPKD 215
            + L+ +  +                                 +++ +   +        
Sbjct: 240 ADALKAEIAIDDEAAQQYYQEHLDKYSSAEQRKVSHILIEGDDEQKAQAILDELNAGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               ++ +  +      G   ++    + P F+        +   +    +  G   I +
Sbjct: 300 TTVAKEKSQDVGSAQDGGSLGWIERDTMDPAFEAAAYALTEKGQISGLVKSDFGYHIIRL 359

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            D +   +     +   +  +    +          +L   A 
Sbjct: 360 DDVKAPVVKPYTEVAQAIKQELVDQQALDSFYAKQSELEKLAF 402


>gi|86138690|ref|ZP_01057263.1| PPIC-type PPIASE domain protein [Roseobacter sp. MED193]
 gi|85824750|gb|EAQ44952.1| PPIC-type PPIASE domain protein [Roseobacter sp. MED193]
          Length = 396

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 97/266 (36%), Gaps = 6/266 (2%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVET 84
           F +       +         T++   IT  ++++R   + + +  G+ E +A QELI + 
Sbjct: 5   FALSTTAVPLAAQGLFSPAVTVDNAAITYYELNQRALFMGVLRTPGDPEVMARQELIKDR 64

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
           LK  E+ K GI+     +     + A    LS  +F + L + GI     + +  +   W
Sbjct: 65  LKLAELAKVGISPSEEEITAGMTELASRANLSLNEFLTVLKQNGIDPETVRDFTKVGIGW 124

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
            + +   F+ +    E EI     +  +  V+  L   ++        +      + + D
Sbjct: 125 REYIGARFLSRARPTEAEIDRAMGQAGSGGVQVLLSELIVPI-----NEQNAQQVEALTD 179

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVT 263
                       +   ++++     + G+  ++  + L PQ Q ++        T P   
Sbjct: 180 QVGQLTSFAAFSSAATQYSASDSRNNGGRLPWMNLTKLPPQLQPVVLALDPGEITEPLPL 239

Query: 264 QKGVEYIAICDKRDLGGEIALKAYLS 289
           Q  V    +   R++ G     + + 
Sbjct: 240 QGAVAMFQMRGVREVTGSRQRYSAIE 265



 Score = 38.9 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 25/46 (54%)

Query: 269 YIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            + +C +    GE   +  ++   T  ++E   + ++++LR++A+I
Sbjct: 348 LLMLCGRTAELGEGESRETVANALTQQRLESLSSSFIEQLRADALI 393


>gi|292489392|ref|YP_003532279.1| survival protein SurA [Erwinia amylovora CFBP1430]
 gi|292898389|ref|YP_003537758.1| survival protein A [Erwinia amylovora ATCC 49946]
 gi|291198237|emb|CBJ45343.1| chaperone (peptidyl-prolyl cis-trans isomerase) (survival protein
           A) [Erwinia amylovora ATCC 49946]
 gi|291554826|emb|CBA22684.1| survival protein SurA precursor [Erwinia amylovora CFBP1430]
          Length = 431

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/309 (9%), Positives = 107/309 (34%), Gaps = 16/309 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGEL 72
           +++   +    ++ +  +  ++   +N  V+ + D+   +  +K Q          +  L
Sbjct: 7   LILGAALTASTAFAAPQVVDKVAAVVNNGVVLESDLDSMMQSVKGQAQQAGQQLPDDRTL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ L+++ +  Q+ +++G+      ++      A+   +S +   S L   G+   
Sbjct: 67  RHQILERLVMDNILLQKAKQAGLQVSDAQLDQAIANIAQQNKMSIDQLRSRLAYDGMNYA 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            +++ +  +    +V  ++   +   L  E+ +   ++ +       +      +P  + 
Sbjct: 127 SYREQIRKEMATSEVRNSEVRRRVTILPQEVDSLASQLASQNSAGTELNISHILLPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
             Q  V  +   A++                  ++    +  G   +    +L   F   
Sbjct: 187 PTQQQVDDQENLAKQLVSEAKGGADFGKLAIAHSADPQALKGGNMGWGRIQELPSLFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            +   + +   P  +  G   + + D R     +        ++  + +P   +    + 
Sbjct: 247 LVTAKKGDIIGPVRSGVGFHILKVNDMRGDNQSISVTEVHARHILLKPSPIMTDDQARQK 306

Query: 305 VKKLRSNAI 313
           ++++ S+  
Sbjct: 307 LQQVASDIK 315



 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 56/168 (33%), Gaps = 4/168 (2%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                G   +++   +   ++I+V E   R +L         +Q   QK  + A + +  
Sbjct: 259 VRSGVGFHILKVNDMRGDNQSISVTEVHARHILLKPSPIMTDDQA-RQKLQQVASDIKSG 317

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEY 269
                   ++ +         G   +       P F++ L +  +    +P  +  G   
Sbjct: 318 KLTFSAAAKQLSQDPGSANQGGDLGWSSAEVFDPAFRDALLRLKKGQIGDPVHSSFGWHL 377

Query: 270 IAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           I + D R +   + A K          K  +    ++++ R+ A +  
Sbjct: 378 IELMDTRKVDKTDAAKKERAYRLLFNRKFAEEAQTWMQEERAAAYVKI 425


>gi|91228613|ref|ZP_01262531.1| peptidyl-prolyl cis-trans isomerse D [Vibrio alginolyticus 12G01]
 gi|269965576|ref|ZP_06179690.1| peptidyl-prolyl cis-trans isomerse D [Vibrio alginolyticus 40B]
 gi|91187845|gb|EAS74159.1| peptidyl-prolyl cis-trans isomerse D [Vibrio alginolyticus 12G01]
 gi|269829801|gb|EEZ84036.1| peptidyl-prolyl cis-trans isomerse D [Vibrio alginolyticus 40B]
          Length = 619

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/406 (9%), Positives = 102/406 (25%), Gaps = 92/406 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + SY     ++     +    I  G+     
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVGGSNNS-AAKVGNTEIPRGEFEMAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                       K  +  +I + L  Q+ E  G+      V  
Sbjct: 60  QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDTQVRS 119

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                 Q   N     E + + L + G   + F +Y+  + +   ++             
Sbjct: 120 MILDMPQFQSNGQFDQEIYQASLRRAGFSPDSFAEYMRRELVREQLLNALQNSEFILPGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                 +F       + EI    +   +   R   ++     + 
Sbjct: 180 VQAEGKLFTQTRDIRTIQIDLAEFAKNIELTDEEIQEYYKANPDNFTRPEQVKVSYIELS 239

Query: 189 DNKLQNQGFV---------------------------------QKRIKDAEESRLRLPKD 215
              L+ Q  V                                 + + +   +        
Sbjct: 240 AEALKEQVNVSDAEVKKYYDEHLNKYSSEEQRRVAHILVEGDDEAKAQAILDELNAGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               ++ +       + G   ++    + P F+      K+  +T+    +  G   I +
Sbjct: 300 ATLAQEKSDDFGSAENGGDLGWIERDVMDPAFEEAAFALKNPGDTSGLVKSDFGYHIIKL 359

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + +D        + A +  +    +      E   +L   A   Y
Sbjct: 360 EELKDSVAKPFEEVAAEIKQEMVDQQAIDQFYELQNELERVAF-EY 404


>gi|304392008|ref|ZP_07373950.1| survival protein SurA [Ahrensia sp. R2A130]
 gi|303296237|gb|EFL90595.1| survival protein SurA [Ahrensia sp. R2A130]
          Length = 343

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 63/282 (22%), Positives = 106/282 (37%), Gaps = 8/282 (2%)

Query: 41  RIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
           RI   +N   IT  DI++R   ++L+++ G    IA  ELI E +K +E  +        
Sbjct: 61  RIAVLVNETPITSTDIARRAKFVRLRRMKGNATTIATNELIDEAIKMKEARRINAVASDA 120

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL- 159
            V+  +   A+N  L+       L + G     FK Y+     W   V +    +     
Sbjct: 121 EVSSAYAGFAKNNKLTQPQLGQVLSRSGTTVRGFKDYIRASLSWQRAVGSRMRAEASGRG 180

Query: 160 ---EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
              E                +    T+   +       +G +  R   A + R R+    
Sbjct: 181 GLGEKAKGPRFLSSAGTQGAKEGEYTLQQIVFVVPSDKRGQLSARRAQANQFRTRMNGC- 239

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDK 275
               + A  + DVS+     LL+S L PQ+ + +   S+   T    T KGVE +A+C K
Sbjct: 240 TNALELAKSLRDVSVRDRGRLLDSQLPPQWAKEIRALSEGGVTRTKDTDKGVEMLALCRK 299

Query: 276 RD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           R+                N   +  + E +Y+ +L+  A I 
Sbjct: 300 REVRASTSSTSADLFGGANFAEQQSETEKKYLAELKERATIQ 341


>gi|290510114|ref|ZP_06549484.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella sp. 1_1_55]
 gi|289776830|gb|EFD84828.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella sp. 1_1_55]
          Length = 624

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/396 (10%), Positives = 108/396 (27%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y      +     +NG+ I  G     +
Sbjct: 1   MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLIGGGKNY-AAKVNGQEIGRGQFENAV 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           A  + +                     + +  +  LI E+L  Q   + G++     V  
Sbjct: 60  ASERNRMQQQLGDQFSELAANENYMKTMRQQVLNRLIDESLLDQYARELGLSISDEQVKQ 119

Query: 105 FFVQHAR---NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
              Q      N     + FS  + + G+  + + Q L  Q     ++             
Sbjct: 120 AIFQTQAFQTNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFMLPGE 179

Query: 152 -----------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                     K    + EI A  Q+ +   +     R     + 
Sbjct: 180 SDQLAALVSQQRVVREATINVNALAAKQTVSDEEINAFWQQNQARFMAPEQFRVSYIKMD 239

Query: 189 DNKLQNQGFVQKRIKDAEESRLRL-----------------------------PKDCNKL 219
              +Q     ++     ++ + +                                     
Sbjct: 240 AASMQESASDEEIQSWYDQHKDQFTQPQRNRYSVIQTKTEADAKAVLAELQKGADFATLA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   ++ E+   P+ ++     +   +    +  G     + D +  
Sbjct: 300 KEKSTDIISARNGGDMGWMEEASTVPELKDAGLNEKGQLSGVIKSSVGFLVARLDDVQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 QVKPLADVRNDIAAKVKQEKALDAYYALQQKVSDAA 395


>gi|254457621|ref|ZP_05071049.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Campylobacterales
           bacterium GD 1]
 gi|207086413|gb|EDZ63697.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Campylobacterales
           bacterium GD 1]
          Length = 275

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/299 (13%), Positives = 94/299 (31%), Gaps = 40/299 (13%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK-------INGELEKIAVQE 79
           IV  +   S  +S+    T+NG  IT  D+   +      +          E  K  +++
Sbjct: 7   IVATLLLTSTLVSATTLITVNGTQITQQDVDTALMNATQGRFNQVPAEKQAEFRKQVLEQ 66

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           LI + L   + +K+G+    +  + F     R                            
Sbjct: 67  LIAKELVFGDAQKTGVLNSKDFKDEFVQVQERVKKE------------------------ 102

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
              +   V +   + K    + E+     K K+    +  +      +   +        
Sbjct: 103 ---LAIQVWQKQQLDKVEVSDKELKNYYDKNKDEFNEKETVHARHILVKTEEEAKNIVKS 159

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTT 258
            +    E  + +      + +  ++       G   Y  +  + P+F + +        +
Sbjct: 160 LKSLKGEALKAKF---IEEAKAKSTGPSGPKGGDLGYFAQGQMVPEFNDKVFGMKVGTVS 216

Query: 259 NPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            P  TQ G   I + DK  +       +K+++  +    K +    + + +L++ A I 
Sbjct: 217 EPVKTQFGYHVIYLEDKKAKKTLAFTEVKSFIEQRLKMEKFKVVMQDKMLELKNKATIK 275


>gi|262171087|ref|ZP_06038765.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio mimicus MB-451]
 gi|261892163|gb|EEY38149.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio mimicus MB-451]
          Length = 619

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/403 (7%), Positives = 97/403 (24%), Gaps = 91/403 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + +Y   +  +     +    I+ GD  +  
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYL-ISGGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                       K  +  ++ + L +Q     G+      V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDGQVRQ 119

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN----------- 150
                 Q         E + + L + G   + F +YL    +   ++             
Sbjct: 120 MILEMPQFQSQGKFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMTALQGSEFSLPGE 179

Query: 151 ----------------------DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                 +F  K    + +I    +       R   ++     + 
Sbjct: 180 VNLQDQLVSQTRDIRTITLSLAEFAKKVTLSDEDIEQYYKANTERFTRPEQVKVSYVELS 239

Query: 189 DNKLQNQGFV---------------------------------QKRIKDAEESRLRLPKD 215
            + L+ +  +                                 +++ +   +        
Sbjct: 240 ADALKAEIAIDDEAAQQYYQEHLDKYSSAEQRKVSHILIEGDDEQKAQAILDELNAGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               ++ +  +      G   ++    + P F+        +   +    +  G   I +
Sbjct: 300 TTVAKEKSQDVGSAQDGGSLGWIERDTMDPAFEAAAYALTEKGQISGLVKSDFGYHIIRL 359

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            D +   +     +   +  +    +          +L   A 
Sbjct: 360 DDVKAPVVKPYTEVAQAIKQELVDQQALDSFYAKQSELEKLAF 402


>gi|114766150|ref|ZP_01445154.1| PPIC-type PPIASE domain [Pelagibaca bermudensis HTCC2601]
 gi|114541610|gb|EAU44652.1| PPIC-type PPIASE domain [Roseovarius sp. HTCC2601]
          Length = 408

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 97/271 (35%), Gaps = 5/271 (1%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           +LL    +     +                 T++  VIT  +I +R  ++ L    G + 
Sbjct: 5   RLLRALTLTAGLALTVTPGTAPAQNLFAPAITVDEMVITGYEIEQRRRMMTLLNAPGNVN 64

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           +++ ++LI + L+ +    +GI      +     + A    LS E F + L++ G+ +  
Sbjct: 65  ELSREQLIDDRLRLKAARAAGIEPSEQDILDGMDEFAGRADLSREQFVAVLNQGGVDEET 124

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
           F+ ++   + W D+V+  F  +      E+          +    L+  ++         
Sbjct: 125 FRDFVRAGTAWRDLVRAQFASRTQVTPEEVDRALASGGGSSDVRVLLSEII----MPINA 180

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKK 252
                 +   +             +  ++++     + G+  +   ++L PQ ++ +L  
Sbjct: 181 QNAESVQARAERISQMTSTADFSAQARQYSATATRDNGGRLPWRDLTELPPQIRSLVLGL 240

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIA 283
           +    T+P   Q  V    + D  + G    
Sbjct: 241 APGEVTDPLPIQGAVALFQLRDIEETGYTRP 271



 Score = 45.8 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 37/104 (35%), Gaps = 4/104 (3%)

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKG--VEYI 270
             C+ L   A    +  +     L  +++         K      +      +G  + ++
Sbjct: 303 DRCDDLYAVAKGQPEEVL-DRGALPPAEIPTDIAYELSKLDPGEVSTALTRAEGQTLVFL 361

Query: 271 AICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            +C +     E A ++ +       ++ +    Y+ +LR+NA I
Sbjct: 362 MLCGRTAAVAEDADRSQVEIGLRNRRLSEVSDSYLAQLRANARI 405


>gi|258625370|ref|ZP_05720267.1| peptidyl-prolyl cis-trans isomerse D [Vibrio mimicus VM603]
 gi|258582361|gb|EEW07213.1| peptidyl-prolyl cis-trans isomerse D [Vibrio mimicus VM603]
          Length = 619

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/403 (7%), Positives = 92/403 (22%), Gaps = 91/403 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + +Y   +  +     +    I+ GD  +  
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYL-ISGGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                       K  +  ++ + L +Q     G+    + V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDDQVRQ 119

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN----------- 150
                 Q         E + + L + G   + F +YL    +   ++             
Sbjct: 120 MILEMPQFQSQGKFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMTALQGSEFSLPGE 179

Query: 151 ----------------------DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL---- 184
                                 +F  K    + +I    +       R   ++       
Sbjct: 180 VNLQDQLISQTRDIRTITLSLAEFAKKVTLSDEDIEQYYKANTERFTRPEQVKVSYVELS 239

Query: 185 ---------------FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK----------- 218
                                 L      ++R            +               
Sbjct: 240 ADALKAEISIDDEAAQQYYQEHLDKYSSAEQRKVSHILIEGDDEQKAQAILDELNAGADF 299

Query: 219 ---LEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               ++ +  +      G   ++    + P F+        +   +    +  G   I +
Sbjct: 300 TTVAKEKSQDVGSAQDGGSLGWIERDTMDPAFEAAAYALTEKGQISGLVKSDFGYHIIRL 359

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            D +   +     +   +  +    +          +L   A 
Sbjct: 360 DDVKAPVVKPYTEVAQAIKQELVDQQALDSFYAKQSELEKLAF 402


>gi|238919016|ref|YP_002932530.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Edwardsiella
           ictaluri 93-146]
 gi|238868584|gb|ACR68295.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 626

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/399 (7%), Positives = 104/399 (26%), Gaps = 87/399 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + +  +  +    ++I F +  + +Y            ++G+ I    + + +
Sbjct: 1   MMDNLRAAANHVVLKVILALIIISFVLTGVGNYLIGGSGDY-AAKVDGQEIGRAQLEQAV 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                    EL K  +  +I + L  Q  +K  +      V  
Sbjct: 60  QNERSRLQQQLGDQFSVLAGNEGYMKELRKQVLSRMIDDVLLDQYAKKLNLAISDAQVKE 119

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                     +       +   + + G+  + + Q +  Q +   +++            
Sbjct: 120 AIRAMPYFQSDNHFDNAKYLDMVARLGLSPDTYAQLVRQQLVTQQLIQGFTATGFTLPAE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                +  M      + E+    Q+ ++  +    ++     + 
Sbjct: 180 VNALAALTMQQRQVSLATIDISKLMPLQQVSDAELQGYYQQHQSSFIAPETVKVRYIEMD 239

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA------------------------- 223
              + ++  V      A   + +          ++                         
Sbjct: 240 AAAINDKMTVSNAEISAYYDQHKGSFTQPARSDYSVIQVKTEAEAKAIAGQLASGADFAT 299

Query: 224 -------SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
                    I   + G+  +L +     + +      + + + P  +  G   + +   +
Sbjct: 300 LAKEKSTDIISRKNGGELGWLEQETTPDEIRAAKLSHKGDVSAPIASSVGYLIVRLNGIQ 359

Query: 277 DLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
               +    ++A ++ +    K         +K+   A 
Sbjct: 360 PAVVKPLSEVRAEIADKVKQQKALDAFYALQQKVSDAAT 398


>gi|312173557|emb|CBX81811.1| survival protein SurA precursor [Erwinia amylovora ATCC BAA-2158]
          Length = 431

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/309 (9%), Positives = 106/309 (34%), Gaps = 16/309 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGEL 72
           +++   +    ++ +  +  ++   +N  V+ + D+   +  +K Q          +  L
Sbjct: 7   LILGAALTASTAFAAPQVVDKVAAVVNNGVVLESDLDSMMQSVKGQAQQAGQQLPDDRTL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ L+++ +  Q+ +++G+      ++      A+   +S +   S L   G+   
Sbjct: 67  RHQILERLVMDNILLQKAKQAGLQVSDAQLDQAIANIAQQNKMSIDQLRSRLAYDGMNYA 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            +++ +  +    +V  ++   +   L  E+ +   ++ +       +      +P  + 
Sbjct: 127 SYREQIRKEMATSEVRNSEVRRRVTILPQEVDSLASQLASQNSAGTELNISHILLPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
             Q  V  +   A++                  ++    +  G   +    +L   F   
Sbjct: 187 PTQQQVDDQENLAKQLVSEAKGGADFGKLAIAHSADPQALKGGNMGWGRIQELPSLFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            +   + +   P  +  G   + + D R     +        ++  + +P   +    + 
Sbjct: 247 LVTAKKGDIIGPVRSGVGFHILKVNDMRGDNQSISVTEVHARHILLKPSPIMTDDQARQK 306

Query: 305 VKKLRSNAI 313
           ++++ S   
Sbjct: 307 LQQVASEIK 315



 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 56/168 (33%), Gaps = 4/168 (2%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                G   +++   +   ++I+V E   R +L         +Q   QK  + A E +  
Sbjct: 259 VRSGVGFHILKVNDMRGDNQSISVTEVHARHILLKPSPIMTDDQA-RQKLQQVASEIKSG 317

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEY 269
                   ++ +         G   +       P F++ L +  +    +P  +  G   
Sbjct: 318 KLTFSAAAKQLSQDPGSANQGGDLGWSSAEVFDPAFRDALLRLKKGQIGDPVHSSFGWHL 377

Query: 270 IAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           I + D R +   + A K          K  +    ++++ R+ A +  
Sbjct: 378 IELMDTRKVDKTDAAKKERAYRLLFNRKFAEEAQTWMQEERAAAYVKI 425


>gi|157146942|ref|YP_001454261.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Citrobacter
           koseri ATCC BAA-895]
 gi|157084147|gb|ABV13825.1| hypothetical protein CKO_02719 [Citrobacter koseri ATCC BAA-895]
          Length = 623

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/396 (8%), Positives = 104/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     S+     +N + I+        
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYL-IGGSNNYAAKVNDQEISRSQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  ++     V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYAHELKLSISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                A            +++ +++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFSTAAFQVDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLIAGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               + E+ +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQQATDQEVSSYYEQNKNRFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                             +  +        
Sbjct: 240 AAAMQETVNDADIQSYYDQHQDQFTQPQRNRYSVIQTKTEDEAKAVLDALNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++    + +N   K +   +    +  G     + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATTPDELKNAGLKEKGQLSGVIKSSVGFLVARLDDVQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +     +  ++A+    K         +K+   A
Sbjct: 360 KVKPLSEARDDIAAKVKQEKALDAYYALQQKVSDAA 395


>gi|291286199|ref|YP_003503015.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883359|gb|ADD67059.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 318

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/315 (14%), Positives = 96/315 (30%), Gaps = 17/315 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWA------MSSRIR---TTINGEVITDGDISKRIALL 63
           +K      + I+ C+  +  +   A          I     TINGE IT  +    I+  
Sbjct: 1   MKKTKILIITIVLCLSLVSCFPGKAGKKNGLTEEEIANTFVTINGERITKDEYEAFISYS 60

Query: 64  KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
                       AV E + +   +  +       +   V+    +    +  + +     
Sbjct: 61  NSVMDTETRTNPAVVEALHKDFIEHRLLLQKAVAEGVVVDEGKFKDIVESFQTIKGQKML 120

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
            + +   +         + +   ++   F+ K  + +++I   + K      +  L   V
Sbjct: 121 SEFEKQLNM--NFDSLKELLKQRIIIGKFLEKIADSDIDISEEELKAFYEEKKNELNADV 178

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
              I           +K  ++A     +        EKF+      + G   ++  ++  
Sbjct: 179 SAHIQHIVTYE----EKAAQNALGLIKQGIPFSEVAEKFSVAPEKEAGGDLGFINVNEYP 234

Query: 244 PQFQNLLKKSQNNTTNPYVTQKGVEYIAICD--KRDLGGEIALKAYLSAQNTPTKIEKHE 301
             F+  L       +    +  G     + +  K+       LK  L A+    K E   
Sbjct: 235 DIFKEALALKTGQVSGIMKSDYGYHIFKLLEVQKKSGISFDTLKKKLYAELYGIKQENKV 294

Query: 302 AEYVKKLRSNAIIHY 316
            EY+  L   + I Y
Sbjct: 295 REYIDDLYQKSEIIY 309


>gi|206578972|ref|YP_002240079.1| peptidylprolyl isomerase [Klebsiella pneumoniae 342]
 gi|206568030|gb|ACI09806.1| peptidylprolyl isomerase [Klebsiella pneumoniae 342]
          Length = 624

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/396 (10%), Positives = 109/396 (27%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y      +     +NG+ I  G     +
Sbjct: 1   MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLIGGGKNY-AAKVNGQEIGRGQFENAV 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           A  + +                     + +  +  LI E+L  Q   + G++     V  
Sbjct: 60  ASERNRMQQQLGDQFSELAANENYMKTMRQQVLNRLIDESLLDQYARELGLSISDEQVKQ 119

Query: 105 FFVQHAR---NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
              Q      N     + FS  + + G+  + + Q L  Q     ++             
Sbjct: 120 AIFQTQAFQTNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFMLPGE 179

Query: 152 -----------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                     K    + EI A  Q+ +   +     R     + 
Sbjct: 180 SDQLAALVSQQRVVREATINVNTLAAKQTASDEEINAFWQQNQARFMAPEQFRVSYIKMD 239

Query: 189 DNKLQNQGFVQKRIKDAEESRLRL-----------------------------PKDCNKL 219
              +Q     ++     ++ + +                                     
Sbjct: 240 AASMQESASDEEIQSWYDQHKDQFTQPQRNRYSVIQTKTEADAKAVLAELQKGADFATLA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   ++ E+   P+ ++   K +   +    +  G     + D +  
Sbjct: 300 KEKSTDIISARNGGDMGWMEEASTVPELKDAGLKEKGQLSGVIKSSVGFLVARLDDVQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 QVKPLADVRNDIAAKVKQEKALDAYYALQQKVSDAA 395


>gi|85705703|ref|ZP_01036800.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseovarius sp. 217]
 gi|85669693|gb|EAQ24557.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseovarius sp. 217]
          Length = 304

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/307 (10%), Positives = 76/307 (24%), Gaps = 52/307 (16%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMS-SRIRTTINGEVITDGD---ISKRIALLKLQK 67
            ++ L +  +L+    +   +      S   +  T+ G  IT G    +   +     Q 
Sbjct: 22  MLRTLFSTTILVTGLALTSPATAQDTPSPETVMATVGGTDITLGHMLAVRAALPEQFDQT 81

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
               L    +++LI + L  Q  +                                  + 
Sbjct: 82  PPDALFSGVLEQLIQQELLVQAHD---------------------------------GEV 108

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
                   +      +  DV +           ++   + Q        EY    +L   
Sbjct: 109 SRAAALRLENERRAVLAADVAEGVVNADMTEERLQAAYDAQYAGQEDQTEYKAAHIL--- 165

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL-HPQF 246
                      ++  +                ++ ++     S G   +  +  +    F
Sbjct: 166 --------VETEEEAQKLVAELEGGANFAALAQEHSTGPSGPSGGDLGWFGDGVMVPEFF 217

Query: 247 QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
             +      + + P  TQ G   I + + R    E      +      T        ++ 
Sbjct: 218 AAVAALEVGDVSAPLQTQFGWHVIQLNETRVK--ERPTLDAVREDLANTLRRDAFNAFMT 275

Query: 307 KLRSNAI 313
           + R  A 
Sbjct: 276 E-REAAT 281


>gi|288936830|ref|YP_003440889.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Klebsiella variicola
           At-22]
 gi|288891539|gb|ADC59857.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Klebsiella variicola
           At-22]
          Length = 624

 Score =  100 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/396 (10%), Positives = 109/396 (27%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y      +     +NG+ I  G     +
Sbjct: 1   MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLIGGGKNY-AAKVNGQEIGRGQFENAV 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           A  + +                     + +  +  LI E+L  Q   + G++     V  
Sbjct: 60  ASERNRMQQQLGDQFSELAANENYMKTMRQQVLNRLIDESLLDQYARELGLSISDEQVKQ 119

Query: 105 FFVQHAR---NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
              Q      N     + FS  + + G+  + + Q L  Q     ++             
Sbjct: 120 AIFQTQAFQTNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFMLPGE 179

Query: 152 -----------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                     K    + EI A  Q+ +   +     R     + 
Sbjct: 180 SDQLAALVSQQRVVREATINVNALAAKQTASDEEINAFWQQNQARFMAPEQFRVSYIKMD 239

Query: 189 DNKLQNQGFVQKRIKDAEESRLRL-----------------------------PKDCNKL 219
              +Q     ++     ++ + +                                     
Sbjct: 240 AASMQESASDEEIQSWYDQHKDQFTQPQRNRYSVIQTKTEADAKAVLAELQKGADFATLA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   ++ E+   P+ ++   K +   +    +  G     + D +  
Sbjct: 300 KEKSTDIISARNGGDMGWMEEASTVPELKDAGLKEKGQLSGVIKSSVGFLVARLDDVQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 QVKPLADVRNDIAAKVKQEKALDAYYALQQKVSDAA 395


>gi|262042477|ref|ZP_06015636.1| peptidylprolyl cis-trans isomerase D [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040181|gb|EEW41293.1| peptidylprolyl cis-trans isomerase D [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 638

 Score =  100 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/395 (10%), Positives = 109/395 (27%), Gaps = 84/395 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y      +     +NG+ I  G     +
Sbjct: 16  MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLIGGGKNY-AAKVNGQEIGRGQFENAV 74

Query: 61  ALLKLQKIN---------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           A  + +                    + +  +  LI E+L  Q   + G++     V   
Sbjct: 75  ASERNRMQQLGDQFSELAANENYMKTMRQQVLNRLIDESLLDQYARELGLSISDEQVKQA 134

Query: 106 FVQHAR---NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND----------- 151
             Q      N     + FS  + + G+  + + Q L  Q     ++              
Sbjct: 135 IFQTQAFQTNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFMLPGES 194

Query: 152 ----------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                                    K    + EI A  Q+ +   +     R     +  
Sbjct: 195 DQLAALVSQQRVVREATINVNALAAKQTASDEEINAFWQQNQARFMAPEQFRVSYIKMDA 254

Query: 190 NKLQNQGFVQKRIKDAEESRLRL-----------------------------PKDCNKLE 220
             +Q     ++     ++ + +                                     +
Sbjct: 255 ASMQESASDEEIQSWYDQHKDQFTQPQRNRYSVIQTKTEADAKAVLAELQKGADFATLAK 314

Query: 221 KFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
           + ++  I   + G   ++ ++   P+ ++   K +   +    +  G     + D +   
Sbjct: 315 EKSTDIISARNGGDMGWMEDASTVPELKDAGLKEKGQLSGVIKSSVGFLVARLDDVQPAQ 374

Query: 280 GE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
            +    ++  ++A+    K         +K+   A
Sbjct: 375 VKPLADVRNDIAAKVKQEKALDAYYALQQKVSDAA 409


>gi|317492905|ref|ZP_07951329.1| ppic-type ppiase domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316919027|gb|EFV40362.1| ppic-type ppiase domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 627

 Score =  100 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/399 (10%), Positives = 104/399 (26%), Gaps = 87/399 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + +  +  +    +++ F +  +  Y +          ++G+ I+ G + + +
Sbjct: 1   MMDNLRAAANHVVLKIILGLIIVSFVLTGVGGYLTGGSGDY-AAKVDGQEISRGQLEQAV 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                    EL K A+  LI + L  Q  +K G+      V  
Sbjct: 60  QSERSRLQQQLGDQFSVLAGNEGYMKELRKQALNRLIDDMLLDQYAKKLGLGISDEQVKE 119

Query: 105 FFV---QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                     N       + S +   G+  +++ Q +  Q     +++            
Sbjct: 120 AIWAMPYFQTNNQFDNAKYLSIIANMGLTPDNYAQLVRQQLTSQQLIQAYTATGFTLPVE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVRE----------- 177
                                          + E+ A  ++ KN  +             
Sbjct: 180 VEAMAALTMQQRDVRLATIDIKALEKDQKVTDEELKAYYEQNKNSFIAPEEVKVSYIEMD 239

Query: 178 -----------------YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
                            Y  +         +        K   DA+     L    +  +
Sbjct: 240 AAAIQDKVTVSDDEIAAYYDQHKSSYTQPERKDYSVIQVKTEADAKAVLDELNSGADFAK 299

Query: 221 KFASKI----HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
             A K          G+  +L       +       ++   +    +  G   + + D +
Sbjct: 300 VAAEKSTDIISRKKGGELGWLEPGTTPDEILGAKLTTKGQLSGAVKSSVGYLVVRLNDIK 359

Query: 277 DLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
               +    ++A + AQ    K         +K+  +A 
Sbjct: 360 PEQVKPLAEVRADIEAQVKQQKALDAFFALQQKVSDSAT 398


>gi|256556956|gb|ACU83578.1| parvulin-like peptidyl-prolyl isomerase [uncultured bacterium
           HF130_AEPn_2]
          Length = 623

 Score =  100 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/402 (11%), Positives = 117/402 (29%), Gaps = 89/402 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++++     I +      +S+    +NGE I+  ++S+ +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIVVLMAFTGIEAIFQATTNSQDAAKVNGEEISQNELSQAV 60

Query: 61  ALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF- 106
            + + Q +                L + A++ LI   L  Q    S  +F    ++    
Sbjct: 61  DMQRRQLMQQLGKDFDASLLDEKMLREAALKGLIERKLLLQGAADSKFSFSEAALDQVIL 120

Query: 107 --VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML---------- 154
              +   +   SAE F   + + G     F+Q L  + +   +                 
Sbjct: 121 QTPEFQEDGKFSAERFDQVIRQLGYSRMQFRQMLTQEMLIGQLRAGIAGSGFVTDQEVLN 180

Query: 155 ---------------------KYGNLEMEIPANKQKMKNITVREYLIRT----------- 182
                                     + E+ A   +     +    +             
Sbjct: 181 FARLEKQTRDFATVSVKADPAAVKLTDDEVKAYYDQHAKEFMTPDQVVIDYLELKKASFF 240

Query: 183 --------VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL--------------- 219
                    L ++ + +  N    ++      E   ++ +   K                
Sbjct: 241 DQVTVNDDELQALYEKETANLAEQRRAAHILIEVNDKVTEAQAKAKIDEVQARLAKGESF 300

Query: 220 ----EKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAIC 273
               ++F+       + G   +       P+F++     +Q+  + P  +  G   I + 
Sbjct: 301 EALAKEFSQDPGSANNGGDLGFAGPGVYDPEFESALYGLNQDQVSAPVRSSFGWHLIKLL 360

Query: 274 DKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                ++    +LK  L+ +    ++E+   E  K+L   A 
Sbjct: 361 GVEAPEVPSFASLKDKLTRELKTQQVEQRFVEATKQLEDAAF 402


>gi|238755738|ref|ZP_04617071.1| Chaperone surA [Yersinia ruckeri ATCC 29473]
 gi|238706030|gb|EEP98414.1| Chaperone surA [Yersinia ruckeri ATCC 29473]
          Length = 433

 Score =  100 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 104/302 (34%), Gaps = 16/302 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++   +    ++ +     ++   +N  V+   D+   +  +KL              L
Sbjct: 7   LILGLVVCANTAFAAPQEVDKVAAVVNNGVVLQSDVDGLLQSVKLNAQQAGQQIPDEATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ ++ Q  +K GIT     ++      A    ++ +   S L  +G+  +
Sbjct: 67  RHQILERLIMDNIQLQMAQKMGITVSDEALDKAIADIAAQNRMTTDQMRSRLAAEGLNYS 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + +  +V  N+   +   L  E+ +  +++   T  +  +      IP  + 
Sbjct: 127 TYRAQIRKEMLTSEVRNNEVRRRVNILPQEVESLAKQISAQTGDDAELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
            +Q  V      A+       +           ++    +  G+  +    +L   F + 
Sbjct: 187 PSQQQVDTAEDLAKNLVAELKKGADFGKLAIANSADSQALKGGQMGWGKLQELPTLFAER 246

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
           L   S+ +   P  +  G   + + D R     +        ++  + +    +      
Sbjct: 247 LKTTSKGDIVGPIRSGVGFHILKVNDIRGENKSISVTEVHARHILLKPSVVMTDDQARAK 306

Query: 305 VK 306
           ++
Sbjct: 307 LQ 308



 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 54/167 (32%), Gaps = 2/167 (1%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                G   +++   + + K+I+V E   R +L         +Q   + +    +    +
Sbjct: 259 IRSGVGFHILKVNDIRGENKSISVTEVHARHILLKPSVVMTDDQARAKLQAAANDIKNGK 318

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYI 270
           +                +  G   +       P F++ L K  +   + P  +  G   I
Sbjct: 319 VTFADEAKRLSEDSGSAIQGGDLGWASPDIYDPAFRDALLKLKKGEISAPVHSSFGWHLI 378

Query: 271 AICDKRDLG-GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R +   + A K          K  +    ++++ R+ + +  
Sbjct: 379 QLLDTRQVDRTDAAQKDRAYRMLFNRKFAEEAQTWMQEQRAASYVKI 425


>gi|262394811|ref|YP_003286665.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. Ex25]
 gi|262338405|gb|ACY52200.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. Ex25]
          Length = 619

 Score =  100 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/406 (9%), Positives = 102/406 (25%), Gaps = 92/406 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + SY     ++     +    I  G+     
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVSGNNNS-AAKVGNTEIPRGEFEMAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                       K  +  +I + L  Q+ E  G+      V  
Sbjct: 60  QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDTQVRS 119

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                 Q   N     E + + L + G   + F +Y+  + +   ++             
Sbjct: 120 MILDMPQFQSNGQFDQEIYQASLRRAGFSPDSFAEYMRRELVREQLLNALQNSEFILPGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                 +F       + EI    +   +   R   ++     + 
Sbjct: 180 VQAEGKLFTQTRDIRTIKIDLAEFAKNIELTDEEIQQYYKANPDNFTRPEQVKVAYIELS 239

Query: 189 DNKLQNQGFV---------------------------------QKRIKDAEESRLRLPKD 215
              L+ Q  V                                 + + +   +        
Sbjct: 240 AEALKEQVNVSDAEVKKYYDEHLNKYSSEEQRRVAHILVEGDDEAKAQAILDELNAGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               ++ +       + G   ++    + P F+      K+  +T+    +  G   I +
Sbjct: 300 ATLAQEKSDDFGSAENGGDLGWIERDVMDPAFEEAAFALKNPGDTSGLVKSDFGYHIIKL 359

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + +D        + A +  +    +      E   +L   A   Y
Sbjct: 360 EELKDSVAKPFEEVAAEIKQEMVDQQAVDQFYELQSELERVAF-EY 404


>gi|254718001|ref|ZP_05179812.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. 83/13]
 gi|265982948|ref|ZP_06095683.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. 83/13]
 gi|306839780|ref|ZP_07472581.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. NF 2653]
 gi|264661540|gb|EEZ31801.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. 83/13]
 gi|306405135|gb|EFM61413.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. NF 2653]
          Length = 331

 Score =  100 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 85/282 (30%), Gaps = 48/282 (17%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQ---KINGELEKIAVQELIVETLKKQEIEKSGIT 96
           S++  TING+ IT G++ +    L  Q       +    A+  LI       E EK  + 
Sbjct: 61  SKVLATINGKDITVGEVDQTAGDLDPQFARLPVEQRRLAALAALIDIKAMAGEAEKDKL- 119

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
                                         Q        ++L  +++  +  KN  + K 
Sbjct: 120 -----------------------------DQTKEFKDRMEFLRERALHNEYFKNAIVDKI 150

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
            + ++    +K+        E   R +L    +                 +      K  
Sbjct: 151 SDADVRARYDKEIAAMPPQVEVRARHILVKTKEEAEA-----------IIKKLEGGAKFE 199

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT-NPYVTQKGVEYIAICD 274
           +  +  ++     S G   Y  E  + P+F+           T  P  TQ G   I + D
Sbjct: 200 DLAKASSTDGTASSGGDLGYFTEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLED 259

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +R           +  Q     + +   E VKKLR    I Y
Sbjct: 260 RRTKQP--PAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDY 299


>gi|313675959|ref|YP_004053955.1| ppic-type peptidyl-prolyl cis-trans isomerase [Marivirga tractuosa
           DSM 4126]
 gi|312942657|gb|ADR21847.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marivirga tractuosa
           DSM 4126]
          Length = 449

 Score =  100 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/308 (12%), Positives = 99/308 (32%), Gaps = 16/308 (5%)

Query: 16  LTTYFVLIIFCIVPIV--SYKSWAMSSRIRTTINGEVITDGDISKRIA--LLKLQKINGE 71
           + T+F  + F   PI   +        +I   ++  +I + D++      L +  + + E
Sbjct: 8   ILTFFTSLAFLFAPIWVEAQSEVKTVDKIIAKVDNYIILESDLALAYKDRLSRGGQQSAE 67

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
                ++ LIV  L   + E   +T   + V+       +             +  G   
Sbjct: 68  GRCEVLESLIVNKLMLAKAEIDSVTVLESQVDAQLENRMKMMVQQIGSEEKIEEYYGKSL 127

Query: 132 NHFKQYLAIQSIWPDVV---KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV---LF 185
           + FK  +        ++   +            ++      +   ++  Y  +     + 
Sbjct: 128 DEFKVEIRDDVKEQMIIGEMQRTITQDLEVTPKQVQNFFDNIPKDSLPFYSTQVQVGQIV 187

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD-VSIGKAQYLLESDLHP 244
             P    + +  ++ R+    E  L      +    ++ +     S G   Y     L P
Sbjct: 188 KKPTMSREAKENIKARLNGLRERILEGENFEDIARLYSQEPGAKQSGGNIGYFERGQLAP 247

Query: 245 QFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE-KHEA 302
           +++    +      + P  T  G   I + D+R   G      ++      TK + +   
Sbjct: 248 EYEATALRLKPGEISKPVETDFGFHIIELLDRR---GNEFNTRHILILPKFTKRDMEKSV 304

Query: 303 EYVKKLRS 310
           +++  +R+
Sbjct: 305 QFLDSIRN 312


>gi|182680158|ref|YP_001834304.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182636041|gb|ACB96815.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 299

 Score =  100 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 83/283 (29%), Gaps = 49/283 (17%)

Query: 38  MSSRIRTTINGEVITDGDI----SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKS 93
            ++++   +NG+ ITD D+        + L  Q      +   +  LI   L  Q+ +  
Sbjct: 36  AAAKVLAKVNGKEITDEDLKYATEDLASSLPPQLEGKARDSYLLDYLIDAELVAQKAQAE 95

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
            +   ++  N                                 Y   + +   ++     
Sbjct: 96  KLDKTTDFNNRL------------------------------AYFREKLLMEVLLSQVAK 125

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                  ++   ++        +E   R +L +  D+       ++              
Sbjct: 126 GAVTEEALKTAYDEAAKAQKPEQEIHARHILVATDDDAKAVLKRLKA-----------GE 174

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAI 272
                 ++ +        G   +  +  + P+F +   K  +N  + P  +Q G   I +
Sbjct: 175 DFAKVAKEVSKDPSA-DGGDLGWFTKDRMVPEFADAAFKLDENQLSEPVKSQFGWHIIQV 233

Query: 273 CDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             KR           +  Q     I++ + E V +LR  A I 
Sbjct: 234 LGKRQKT--FPPYDQVREQVARFVIQRAQGELVAQLRKAAKIE 274


>gi|260467140|ref|ZP_05813318.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mesorhizobium
           opportunistum WSM2075]
 gi|259029064|gb|EEW30362.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mesorhizobium
           opportunistum WSM2075]
          Length = 309

 Score =  100 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/283 (13%), Positives = 80/283 (28%), Gaps = 49/283 (17%)

Query: 40  SRIRTTINGEVITDGDI---SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGIT 96
           + +  T+NG+ +T+ D+      ++    Q    +    A+   I   +   +   +G+ 
Sbjct: 54  NAVVATVNGQPLTEADLMLAEGELSQQFAQLPPEQRRAAALSAAIEIRVMAAQAVTTGLD 113

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
            D +                                    +L  +++  ++V+   + K 
Sbjct: 114 KDPDFQRR------------------------------MAFLQQRALHGEMVEKGVVAKV 143

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
            + E+    +++      V E   R +L    +                 +         
Sbjct: 144 TDAEVRARYDQEIANTPPVNEVHARHILVKTKEEAEA-----------IIKQLDGGADFQ 192

Query: 217 NKLEKFASKIHDV-SIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAIC 273
               +  S      S G   +     + P+F +          T  P  +Q G   I + 
Sbjct: 193 KLANEHTSDPSGKTSGGDLGWFGPGQMVPEFDKAAFALEVGKYTEQPVQSQFGWHVIKLE 252

Query: 274 DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           DKR           +  Q     I       VK LR+ A +  
Sbjct: 253 DKRTKQP--PAFDDVKDQAKQAVIRDKYFALVKSLRAGAKVEI 293


>gi|114048051|ref|YP_738601.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-7]
 gi|113889493|gb|ABI43544.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-7]
          Length = 621

 Score =  100 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/407 (9%), Positives = 92/407 (22%), Gaps = 95/407 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+       I       V++ F    + SY   + S      +NG+ IT  ++ +  
Sbjct: 1   MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYLG-SQSDVPAAEVNGDKITKAELEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     +++  ++ L+ + L  Q     G+      +  
Sbjct: 60  QSERARMEQQLGEMFAALSADERYLESIKQSVLERLVADKLIDQAAAAMGLRVSDEQIIA 119

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
                     +     + + + L + G     F+  + +      +              
Sbjct: 120 AIKSEPAFQTDGKFDNDRYQAILRQLGYQPQTFRSMMRVDMTRRQLTAALVGTEFVLPGE 179

Query: 152 -----------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVL---- 184
                                  F+      + ++       +   +    +        
Sbjct: 180 AKQLAELQGQTRDIRYLVVDSAPFLANASVTDEQVKNYYDTNQGQFMSPEKVSLEYVELN 239

Query: 185 ---------------FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK-------- 221
                           +  D         +KR+           +   K +         
Sbjct: 240 SADFAKDSKVTDEEAQAYYDEHKTQYVSNEKRLAAHILIGPGSDEAVAKAKAEDLAKQLD 299

Query: 222 ------------FASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVE 268
                           +     GK  +     + P F   L    +   +    T  G  
Sbjct: 300 NGADFAELAKANSEDTLSAEQGGKLDWFEPGVMDPSFDTALFALQKGQHSAVVKTDFGFH 359

Query: 269 YIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            I + D +         +KA + AQ    K          KL   + 
Sbjct: 360 IIKLLDVQPGTTVPFADVKAKIVAQLQEKKAVDQFYSLQSKLADTSY 406



 Score = 40.4 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 39/131 (29%), Gaps = 4/131 (3%)

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
               +     K+ +  E +R +  +   +++  A+ +   +  K     +          
Sbjct: 487 EVKADISDRLKQDQANEAARAKAQELMTQVKAGAADVTLTAKAKLGRGAQDVDAAIVGKA 546

Query: 250 LKKSQNNTTNPYVT---QKGVEYIAICDKRDLG-GEIALKAYLSAQNTPTKIEKHEAEYV 305
            +    + T    T     G   IA+            L   L  +      E      +
Sbjct: 547 FQMPTPSATPVVDTVGLANGYAVIALDKVNAAESVSDELVNALKQRLNAQYSEADYRGLI 606

Query: 306 KKLRSNAIIHY 316
           + L++NA I Y
Sbjct: 607 ESLKANAKIDY 617


>gi|171910875|ref|ZP_02926345.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verrucomicrobium
           spinosum DSM 4136]
          Length = 344

 Score =  100 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/304 (10%), Positives = 82/304 (26%), Gaps = 20/304 (6%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ------------KINGELEKIAVQE 79
           S      S+ I   +NG+V+T  ++ + +   +                  +L + A+  
Sbjct: 20  SSAVAQSSNGIAVVVNGKVVTKSEVKEAVEAQEQLIRMTVRDPNEQTARLAQLREGALYA 79

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           LI   L   E +K G +     ++       R+      +       +        +   
Sbjct: 80  LIERQLVLSEFDKLGGSIKPQYIDDDINGIVRDNFEGNREKFLMELAKTGMTLKKFREQR 139

Query: 140 IQSIWPDVVKNDFMLK-YGNLEMEIPANKQKMKNITVREYLIRT----VLFSIPDNKLQN 194
            + +   V++             ++    +K  +    +  I+     +      N   +
Sbjct: 140 QKMMVVSVLRARQTKDLAPPTPAQVEEFYRKNADKFRDKDYIKFSTITIPKYPIGNVGAS 199

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKS 253
               +K  ++            N  + ++      S G       + L  +  +      
Sbjct: 200 PESQKKLAEEIRGKVTNGSDFANLAKTYSQDSRAESGGDWGLQERATLSREIAEVAFALK 259

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
               +           I    K+    E    ++  +       +       ++  L S 
Sbjct: 260 VGGVSRVVEIGGNYMIIYCEAKQPGNMEPLEKVRPQIEKFIQSEQGRNAVNRWLSGLASK 319

Query: 312 AIIH 315
           AII 
Sbjct: 320 AIIQ 323


>gi|254464586|ref|ZP_05077997.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacterales
           bacterium Y4I]
 gi|206685494|gb|EDZ45976.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacterales
           bacterium Y4I]
          Length = 305

 Score =  100 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 92/248 (37%), Gaps = 6/248 (2%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             T+N +VIT  ++ +R       ++ G+  + A +ELI + LK   ++++GI      +
Sbjct: 42  AITVNDQVITRYELEQRARFQAALRVPGDPLETAREELINDRLKLMVLKQAGIELSEEDI 101

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                + A    LS  +F + L +QG+     + +  +   W +  +  F+ +      E
Sbjct: 102 TAGMEELAGRANLSLNEFLTVLQQQGVAPQTLRDFTKVGLGWREYTRARFLSRARPTPEE 161

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           I          +V+  L   ++     N  Q +  V++                    ++
Sbjct: 162 IDRAMGTSGTGSVQVLLSEFIVPLNDQNAAQVEELVEQ-----VAKLKGYDSFSAAATQY 216

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           ++       G+  ++  + L PQ Q ++        + P   Q  V    +   R++ G 
Sbjct: 217 SAAGSRGDGGRLPWMPLTKLPPQLQEVVLALQPGEISEPLPLQGAVALFQMRGLREVEGA 276

Query: 282 IALKAYLS 289
               + + 
Sbjct: 277 APRFSAIE 284


>gi|82775652|ref|YP_401999.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella
           dysenteriae Sd197]
 gi|81239800|gb|ABB60510.1| putative protease maturation protein [Shigella dysenteriae Sd197]
          Length = 623

 Score =  100 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 104/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDNLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVRHEKALDAYYALQQKVSDAA 395


>gi|163739707|ref|ZP_02147115.1| leucyl aminopeptidase [Phaeobacter gallaeciensis BS107]
 gi|161386937|gb|EDQ11298.1| putative chaperone surA [Phaeobacter gallaeciensis BS107]
          Length = 421

 Score = 99.7 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 97/259 (37%), Gaps = 6/259 (2%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLK 86
           ++   +  +         T+N  V+T+ ++ +R   L L +  G+ +K A ++LI++ LK
Sbjct: 32  VMFGPAPAAAQGLFAPAVTVNDAVVTNYELQQRARFLTLLRDPGDPQKKAREDLILDRLK 91

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
              + ++GI      +     + A    LS ++F + L + G+     + +  +   W +
Sbjct: 92  LDVLAQAGIEPTEEEIVEGMTELAGRANLSLQEFLNVLGQNGVAPETLRDFTRVGIAWRE 151

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
            V   ++ +    E EI        +  V   L   ++     N  Q +   Q+      
Sbjct: 152 YVAARYLAQARPSEEEIDRAMGLAGSGGVEVLLSELIMPINAQNAAQVEEIAQQ-----V 206

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQK 265
                        +++++     S G+  ++  ++L PQ Q ++        T P     
Sbjct: 207 SRITTTGAFSQAAQQYSATATRQSGGRLPWMPLTNLPPQLQQVVLGLRPGEVTAPLPLDG 266

Query: 266 GVEYIAICDKRDLGGEIAL 284
            V    + D R+  G    
Sbjct: 267 AVALFQLRDLRETSGAAPS 285


>gi|220905632|ref|YP_002480944.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869931|gb|ACL50266.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 639

 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/403 (10%), Positives = 99/403 (24%), Gaps = 96/403 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +          L    ++++F    + ++   +    +   +NG+ I+  +     
Sbjct: 1   MLEYIRDKSQSLGVKLAFGLIILVFVFWGVGNFNDRSSG-TLVAVVNGDPISMREFELAY 59

Query: 61  A------------LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
                        L + Q    +L +  +++LI + L  QE  ++G++     +      
Sbjct: 60  RNAEENLLRSNPGLTREQLKQQQLGRQILRDLITQVLLSQEAARTGVSITPLELRMAVGN 119

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN------------------ 150
                    +       +                    + +                   
Sbjct: 120 IKGFQNEKGQFDPEVYTRVLAAQRMAPAQFEQDMSRDLLRQKIFAMVTAPAWVDPAESQK 179

Query: 151 -------------------DFMLKYGNLEMEIPANKQKMKNIT--VREYLIRTVLFSIPD 189
                              DF       + E+ A  +  K          +  VL S  D
Sbjct: 180 RFEFLREKRDVDYIFIPASDFAASVKPSDEEVQAYYESHKAQFAIPARADVAYVLVSPQD 239

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCN-------------------------------- 217
               +        K   ++  R  +                                   
Sbjct: 240 LVKASGISSAAAEKWYADNAARFEQQEEVKAAHILVPLAEDASEADVKKAQEQAAAIEAE 299

Query: 218 --KLEKFASKIHDVSI-------GKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGV 267
               + FA+     +        G+  +L        F++     +    + P  +Q G+
Sbjct: 300 LKAGKSFAAVADAHNGPNAAGPGGELGWLKRGTTVKPFEDAAFALAPGKVSAPVRSQFGL 359

Query: 268 EYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
             I + +K+D  L     ++A + A     +      + V  L
Sbjct: 360 HIIKVEEKKDGGLPPFKQVEAEVLAAMAQEQGADKLHDVVDNL 402


>gi|325106143|ref|YP_004275797.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter saltans
           DSM 12145]
 gi|324974991|gb|ADY53975.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter saltans
           DSM 12145]
          Length = 454

 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/271 (10%), Positives = 85/271 (31%), Gaps = 10/271 (3%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ--KINGELEKIAV 77
           +++I   I+    +    +  ++   +   +I   ++ ++ A   LQ  K +  ++   +
Sbjct: 4   YLVIALLIMSSNLFAQKKVIDKVVAVVGDNIILQSEVEQQYAQYILQGTKPDPNIKCYIM 63

Query: 78  QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY 137
           Q ++ + L  ++     I  +   V+    +  R     A       +  G     +K  
Sbjct: 64  QSMLSQKLLTKQAAIDSIVVEDGDVDNEVERRMRTMITRAGGEQRLEEFLGRPVILYKDE 123

Query: 138 LAIQSIWP---DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
           +            ++     K     +++    Q +   ++  Y     +  I       
Sbjct: 124 IRPDIREQLVAQKMQAKITEKVEVTPLDVRRFYQAIPKDSLPVYNTEVEVGEIVIYPKLT 183

Query: 195 QGFVQKRIKDAEESRLRLPK---DCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQN-L 249
           +   +      E  RLR+            ++         G+  +   + +  +F    
Sbjct: 184 KEEKETYKDKLEALRLRIKNGDSFATLARLYSQDPGSARDGGELPFFDRNTMAKEFTAWA 243

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
            K      +  + T+ G  ++ + ++R    
Sbjct: 244 FKLKPGELSPVFETEFGFHFLEVLERRGENV 274



 Score = 40.8 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 26/285 (9%), Positives = 70/285 (24%), Gaps = 18/285 (6%)

Query: 50  VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
            +T  D+ +    +    +     ++ V E+++     +E +++                
Sbjct: 146 EVTPLDVRRFYQAIPKDSLPVYNTEVEVGEIVIYPKLTKEEKETYKDKLEALRLRIKNGD 205

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
           +  T            + G     F +    +       K          E E   +  +
Sbjct: 206 SFATLARLYSQDPGSARDGGELPFFDRNTMAKEFTAWAFKLKPGELSPVFETEFGFHFLE 265

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHD 228
           +          R +L          +    +     ++   +          ++ +    
Sbjct: 266 VLERRGENVRARHILIVPDSPPAALERARVEIDSIYQKVVAKKMDFSAAASLYSGNNDTK 325

Query: 229 VSIGKA---------QYLLESDL-HPQFQNLLKKSQNNTTNP-YVTQK----GVEYIAIC 273
            + G            Y+    L    F  +      + + P   T      G  ++ + 
Sbjct: 326 YNGGMILNYESSNRTTYIPTDKLDPSIFLVVDTMKVGSYSKPDVFTDNRGKKGYRFLYLK 385

Query: 274 DKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            K              +       K  K  +++ +K R +  I  
Sbjct: 386 TKIPPHTANLEQDFPKIKEAAYEEKTSKVVSDWFEKRRKSTYIRI 430


>gi|189499014|ref|YP_001958484.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
           phaeobacteroides BS1]
 gi|189494455|gb|ACE03003.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
           phaeobacteroides BS1]
          Length = 440

 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/313 (9%), Positives = 90/313 (28%), Gaps = 15/313 (4%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ---- 66
                      ++   +         A++ RI   +  E+I    + ++  + +LQ    
Sbjct: 2   IMKNRFLRLVAVVFIMVAAGFQRAGAAVADRIVAVVGNEMIMQSQVDEQAMMARLQYTEA 61

Query: 67  KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
           K +  L+   ++ L+   +   +     I  D + +     +  R               
Sbjct: 62  KNDPSLKAGILENLVTRKIVLTKARIDSIQVDESDIEKRTDERMRFLRSKFSSIEEMEST 121

Query: 127 QGIGDNHFKQYLAIQSIWPDVV-----KNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
                   ++ +        ++     +    +     E+E      + K   V E +  
Sbjct: 122 FSKSYAVIEKEIKDDIRDQQLINNLRRQKMMGVNVTYEEVEDFYGANRDKLPVVPEAVEV 181

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLES 240
           + +   P    + +   +  I+  ++             +++         G   Y    
Sbjct: 182 SQVVMYPKVTAEAKAKARAAIEAMQQRLRSGENFAALAREYSQDPGSARLGGDLGYSRRG 241

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
           +    ++ +     +   +    T+ G   I + DK     +     ++      + ++ 
Sbjct: 242 EFVKNYEKVAFGLEEGEISGIVETRFGYHIIQLLDKEQ---DAVHTRHILIVFDRSTLDA 298

Query: 300 -HEAEYVKKLRSN 311
                 ++ +RS+
Sbjct: 299 PAAKAALEMIRSD 311



 Score = 39.7 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 13/169 (7%), Positives = 36/169 (21%), Gaps = 17/169 (10%)

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
            +  ++ +        R +L     + L              +             +++ 
Sbjct: 269 YHIIQLLDKEQDAVHTRHILIVFDRSTLDAPAAKAALEMIRSDIISGKSDFAEMAREYSD 328

Query: 225 KI-HDVSIGKA-------QYLLESDLHPQFQN--LLKKSQNNTTNPYVT--QKG---VEY 269
                   G              S L  Q +      K   + ++      + G      
Sbjct: 329 DPVSSKYGGVIRNTETGETRFAVSSLRDQLKTVVRSFKKVGDISSVVRVAPESGAPFYAI 388

Query: 270 IAICDKRDLGGEIALKA--YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             +  +              L       K  +   E++ +L+    +  
Sbjct: 389 FKLNSREPAHKLDLSSDYARLEKLAIDEKQNRLFQEWINELQKEVYVRI 437


>gi|126724635|ref|ZP_01740478.1| PPIC-type PPIASE domain protein [Rhodobacterales bacterium
           HTCC2150]
 gi|126705799|gb|EBA04889.1| PPIC-type PPIASE domain protein [Rhodobacterales bacterium
           HTCC2150]
          Length = 341

 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 26/315 (8%), Positives = 79/315 (25%), Gaps = 44/315 (13%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
             ++    +  ++   ++    I  +V +           +  T+NG+ IT G +     
Sbjct: 50  LHRLSIKRNISMRFSHSFSAAAIMGMVFVGQPAFSQNMDTVLATVNGDQITLGHMIAMEQ 109

Query: 62  LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
            L  Q  N                                 +           +     S
Sbjct: 110 RLPQQYRN-------------------------------YPDDVLYDGILQQLIQQALLS 138

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
             +D +     +      ++++   ++ +         E       ++    T       
Sbjct: 139 QIVDGKDDLVLNLSIENEVRALKAGLLLDQISADAVTEEAVTKIYDERFAGQTGGVEWNA 198

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
           + +    +++ +                          ++ ++       G+  +     
Sbjct: 199 SHILVDTEDEAKALIVT----------LAEGADFAELAKEKSTGPSGPRGGQLGWFGPGQ 248

Query: 242 LHPQFQ-NLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH 300
           + P+F+    +    + + P  TQ G   + + D R+          + A+         
Sbjct: 249 MVPEFEGAAAEMETGDVSAPVQTQFGWHVLKMNDIRETPA--PTLEEVRAEIVAEIQGLA 306

Query: 301 EAEYVKKLRSNAIIH 315
               ++     A + 
Sbjct: 307 VDSAIEAAEVRATVE 321


>gi|330011537|ref|ZP_08307123.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella sp. MS 92-3]
 gi|328534154|gb|EGF60789.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella sp. MS 92-3]
          Length = 639

 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/396 (10%), Positives = 107/396 (27%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y      +     +NG+ I  G     +
Sbjct: 16  MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLIGGGKNY-AAKVNGQEIGRGQFENAV 74

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           A  + +                     + +  +  LI E+L  Q   + G++     V  
Sbjct: 75  ASERNRMQQQLGDQFSELAANENYMKTMRQQVLNRLIDESLLDQYARELGLSISDEQVKQ 134

Query: 105 FFVQHAR---NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
              Q      N     + FS  + + G+  + + Q L  Q     ++             
Sbjct: 135 AIFQTQAFQTNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFMLPGE 194

Query: 152 -----------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                     K    + EI    Q+ +   +     R     + 
Sbjct: 195 SDQLAALVSQQRVVREATINVNALAAKQTASDEEINVFWQQNQARFMAPEQFRVSYIKMD 254

Query: 189 DNKLQNQGFVQKRIKDAEESRLRL-----------------------------PKDCNKL 219
              +Q      +     ++ + +                                     
Sbjct: 255 AASMQESASDDEIQSWYDQHKDQFTQPQRSRYSVIQTKTEADAKAVLAELQKGADFATLA 314

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   ++ ++   P+ ++   K +   +    +  G     + D +  
Sbjct: 315 KEKSTDIISARNGGDMGWMEDASTVPELKDAGLKEKGQLSGVIKSSVGFLVARLDDVQPA 374

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 375 QVKPLADVRNDIAAKVKQEKALDAYYALQQKVSDAA 410


>gi|259907387|ref|YP_002647743.1| peptidyl-prolyl cis-trans isomerase SurA [Erwinia pyrifoliae
           Ep1/96]
 gi|224963009|emb|CAX54492.1| Peptidyl-prolyl cis-trans isomerase, survival protein [Erwinia
           pyrifoliae Ep1/96]
 gi|283477220|emb|CAY73127.1| survival protein SurA precursor [Erwinia pyrifoliae DSM 12163]
 gi|310765112|gb|ADP10062.1| peptidyl-prolyl cis-trans isomerase SurA [Erwinia sp. Ejp617]
          Length = 431

 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/309 (9%), Positives = 106/309 (34%), Gaps = 16/309 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGEL 72
           +++   +    ++ +  +  ++   +N  V+ + D+   +  +K Q          +  L
Sbjct: 7   LILGAALTASTAFAAPQVVDKVAAVVNNGVVLESDLDSMMQSVKGQAQQAGQQLPDDKTL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ L+++ +  Q+ +++G+      ++      A+   +S +   S L   G+   
Sbjct: 67  RHQILERLVMDNILLQKAKQAGLQISDAQLDQAIANIAQQNKISVDQLRSRLAYDGMNYA 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            +++ +  +    +V  N+   +   L  E+ +   ++ +       +      +P  + 
Sbjct: 127 SYREQIRKEMATAEVRNNEVRRRVTILPQEVDSLATQLASQNSAGTELNISHILLPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
             Q  V  +   A++                  ++    +  G   +    +L   F   
Sbjct: 187 PTQQQVDDQENLAKQLVSEAKGGADFGKLAIANSADPQALKGGNMGWGRIQELPSLFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            +   + +   P  +  G   + + D R     +        ++  + +P   +    + 
Sbjct: 247 LVTAKKGDIIGPVRSGVGFHILKVNDMRGDSQSISVTEVHARHILLKPSPVMTDDQARQK 306

Query: 305 VKKLRSNAI 313
           ++++ +   
Sbjct: 307 LQQVANEIK 315



 Score = 78.9 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 57/168 (33%), Gaps = 4/168 (2%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                G   +++   +   ++I+V E   R +L         +Q   QK  + A E +  
Sbjct: 259 VRSGVGFHILKVNDMRGDSQSISVTEVHARHILLKPSPVMTDDQA-RQKLQQVANEIKSG 317

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEY 269
                +  ++ +         G   +       P F++ L +  +    +P  +  G   
Sbjct: 318 KLTFSDAAKQLSQDPGSANLGGDLGWSSAEVYDPAFRDALLRLKKGQIGDPVHSSFGWHL 377

Query: 270 IAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           I + D R +   + A K          K  +    ++++ R+ A +  
Sbjct: 378 IQLMDTRKVDKTDAAKKERAYRLLFNRKFAEEAQTWMQEERAAAYVKI 425


>gi|241206516|ref|YP_002977612.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240860406|gb|ACS58073.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 293

 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 84/301 (27%), Gaps = 49/301 (16%)

Query: 22  LIIFCIVPIVSYKSWAMSSR-IRTTINGEVITDGDISKRIALL---KLQKINGELEKIAV 77
           L +      V+ ++ A +   +   +    I   ++   +A L     Q  + + +  A+
Sbjct: 7   LAVLAFATFVALQAPAYADDAVIAKVGTLEIHQSELDLAVANLDPQLAQLPDDQKKVAAL 66

Query: 78  QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY 137
              I   L                               A D ++    Q        QY
Sbjct: 67  SAAIDVKLL------------------------------AADAAAEKLDQTDEFKKRMQY 96

Query: 138 LAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGF 197
           L  + +     K   +      E++   +K+        E   R +L             
Sbjct: 97  LTDRELHNAYFKKHVVDIVTPDEVKARYDKEVAALPKQEEVHARHIL-----------VK 145

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNN 256
            +   KD  +            ++ ++  +    G   Y     +  +F++      +  
Sbjct: 146 TEDEAKDIIKQLDAGKDFAELAKEKSTDPNKSEGGDLGYFSRGRMVKEFEDAAFALEKGT 205

Query: 257 TTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            +  P  T  G   I + DKRD          +  Q     +     E + K +++A I 
Sbjct: 206 YSKTPVKTDFGFHVIKVEDKRDAPP--PPFEQVQDQVRQLVMRDKYLELLNKAKASAKIE 263

Query: 316 Y 316
            
Sbjct: 264 I 264


>gi|289522411|ref|ZP_06439265.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289504247|gb|EFD25411.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 388

 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/331 (13%), Positives = 102/331 (30%), Gaps = 21/331 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVS----YKSWAMSSRIRTTINGEVITDGDI 56
           +   + T     +  +   FV+ IF    I S      +     ++    NG  I    I
Sbjct: 2   ILKALRTRTKVIMIAVAVAFVISIFAGYGIYSRRGDSSATTEKDKVVAKANGTNIMLSQI 61

Query: 57  SKRIALLKLQKINGEL--------EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
              +  L  Q     L         K  + +++++    +E++++ I    + +N    +
Sbjct: 62  DMGVRQLMDQMGISNLPQSQYYILRKHVLDQIVLDMELDKEVKENKIEVTDDEINVAMDR 121

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
                  + E +  +L    I +   K+ L  Q     +++          E E+    +
Sbjct: 122 IISQF-PTKEAYQDYLSAYNIKEEDLKKELRRQLAQQKLLQTAVKTDDTVTEEEMQEFYE 180

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
              +          V F+I  +         + ++DA  S        ++    A     
Sbjct: 181 ARGDDYFVRPEGLWVNFAIFSD-----EKTAQGVRDALASGQTWDDVMSQYGDKALHSTS 235

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPY---VTQKGVEYIAICDKRDLGGEIALK 285
                   +   +   +   L +  +   + P      Q G+  +    K++      +K
Sbjct: 236 YDKPLLLPMTTLEAQEELLPLKELKEGELSRPIQLDEEQFGIYLVKGYQKQEKIPYDEVK 295

Query: 286 AYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             +    +  K +    EY++ L   A +  
Sbjct: 296 ENIKLALSQQKAQAQRQEYLQGLVDRANVEI 326


>gi|149178604|ref|ZP_01857190.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces maris
           DSM 8797]
 gi|148842530|gb|EDL56907.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces maris
           DSM 8797]
          Length = 317

 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/317 (11%), Positives = 87/317 (27%), Gaps = 21/317 (6%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSR---------IRTTINGEVITDGDISKRIA 61
            FI L + + V  +  ++   +  S + + +         +  T+NG  +T  D+     
Sbjct: 1   MFISLRSIFIVSSLALLMFAPASDSLSAADKAPAIKDTTKVLVTVNGHPVTQADLDFATL 60

Query: 62  LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
             ++           ++ LI + L +  +    I      ++    +       +  D  
Sbjct: 61  TRRMAGDQKPNPAQLLESLINQRLIQDFLVDKKIKVPVELLDQSVSRIRSIIRKTDGDPD 120

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
             L + G      +  + +   W               E       +  + +       R
Sbjct: 121 QTLSQMGFPPEKLRAAIELPLAWSIYASTQITP-----EKIQNYFAEHREELDGTRIEAR 175

Query: 182 TVLFSIPDNKLQNQGFVQKRI--KDAEESRLRLPKDCNKLEKFASKIHDVSIGKA-QYLL 238
            +L    D   Q      K       ++             + ++       GK      
Sbjct: 176 HILLKPEDPSNQESIDKAKAQLADIRKQILDGKLTFAEAAVQHSTAPSKQDGGKLVPSAY 235

Query: 239 ESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
              +     Q +    +   + P+ T  G+    +  K            +  +   +  
Sbjct: 236 RGKMPLVLTQKIFPLEEGAISEPFQTPFGIHIAQLNKKHPG---QFSLEDVRGEIYRSLS 292

Query: 298 EKHEAEYVKKLRSNAII 314
                + ++ LRS+A I
Sbjct: 293 RSLWDKTIQSLRSSAKI 309


>gi|30249389|ref|NP_841459.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           europaea ATCC 19718]
 gi|30138752|emb|CAD85329.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           europaea ATCC 19718]
          Length = 264

 Score = 99.7 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/305 (13%), Positives = 86/305 (28%), Gaps = 46/305 (15%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--EL 72
            L+ +  + +  +  +      A S      +NG  I    +   +     Q      E+
Sbjct: 2   RLSKFLCVPLTVLGLVCVAPLNAQSGGTVAKVNGVAIPQSRLDLVVKAATAQGQPDSAEV 61

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
                + LI E +  QE  K G+      V                              
Sbjct: 62  RNALRENLITEEILAQEAIKKGLDRSPEVVTQI--------------------------- 94

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                LA Q I     + DFM      + E+    + +K     +      +    + + 
Sbjct: 95  ----DLARQGILIRAYQADFMRNNPVSDSELRKEYESVKAQMGDKEYKARHILVETEQEA 150

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
           ++     K+    ++            E+        + G+  +   +     F + L +
Sbjct: 151 KDLVAALKKGSAFDKL---------AGERSIDTGSKSNGGELGWSSAAVYVKPFADALIR 201

Query: 253 SQNN--TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
            +    T+ P  +  G   I + D R           +        +++  A  V+ LR 
Sbjct: 202 LKKGETTSQPVQSPFGWHVIRLDDVRTAVP--PSFEEVKQNMQQRVLQRKFAAVVESLRK 259

Query: 311 NAIIH 315
           NA + 
Sbjct: 260 NAKVE 264


>gi|311104077|ref|YP_003976930.1| chaperone surA [Achromobacter xylosoxidans A8]
 gi|310758766|gb|ADP14215.1| chaperone surA [Achromobacter xylosoxidans A8]
          Length = 532

 Score = 99.4 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 35/358 (9%), Positives = 100/358 (27%), Gaps = 73/358 (20%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVITDGDISK-------RIALLKLQKINGE-LEKIAVQ 78
             P  + +       I   ++ +VIT  ++          +    +Q  + + L+   +Q
Sbjct: 51  AAPAPAPQREQFVDGIAAVVDKDVITLRELRDASLRISGELKSRGIQVPDDQTLQHQVLQ 110

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
            LI+E +++ E ++ GI  D   V+      A    ++       ++K G   + +++ L
Sbjct: 111 RLIMERVQRHEADRLGIRVDDAQVDQAIQTIAARNKITVAQLRQEIEKSGTHWDGYRKSL 170

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI------------------------- 173
             +     + +          + E+ A  +  +                           
Sbjct: 171 RDEIRTDRLRQRAVDSTIVISDAEVDAFLKDQRRNPAFGAAPQAAPQPQPQAQPQPEPQQ 230

Query: 174 -----TVREYLIRTVLFSIPDNKLQNQ-GFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
                    Y +  +L  +P+     Q   ++K+ +       R     +     +    
Sbjct: 231 AAAPSGPMLYALAQILVRVPEGSSPEQLAALRKKAEGLLAQAKRGDDFASLAAAASDGPE 290

Query: 228 DVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDK----------- 275
            +  G             F Q +    +   ++   +  G   I + D+           
Sbjct: 291 ALQGGVMGVRPLDGWPDLFVQAVSNLQKGQVSSLIQSGNGFHIIKVMDRGTAQPAPARTA 350

Query: 276 ----------------------RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
                                   +        ++  + +    ++   + ++++R  
Sbjct: 351 RAPAPAQAPQPAAAPAQAPAHQGPVEVMQTRARHILIKTSTVMSDELARQRLEQVRQR 408



 Score = 98.6 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 14/140 (10%), Positives = 45/140 (32%), Gaps = 2/140 (1%)

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
                  +       + ++   Q+  +  +       K  +   +++        G+  +
Sbjct: 378 MQTRARHILIKTSTVMSDELARQRLEQVRQRLVSGGAKFEDMARQYSQDATAPQGGELGW 437

Query: 237 LLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD-LGGEIALKAYLSAQNTP 294
           L   +  P F+  +        + P  +  G   I + ++R     +   +         
Sbjct: 438 LNPGETVPPFEAAMNALKPGEISQPVQSPFGWHLIEVEERRQHDATDDMARMKARQILFE 497

Query: 295 TKIEKHEAEYVKKLRSNAII 314
            + +    +++++LR+ A I
Sbjct: 498 RRAQPAFEDWLEQLRAQAYI 517


>gi|283784267|ref|YP_003364132.1| peptidyl-prolyl cis-trans isomerase D [Citrobacter rodentium
           ICC168]
 gi|282947721|emb|CBG87276.1| peptidyl-prolyl cis-trans isomerase D [Citrobacter rodentium
           ICC168]
          Length = 624

 Score = 99.4 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/397 (9%), Positives = 101/397 (25%), Gaps = 85/397 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +NG+ I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNGQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NGERNRMQQQLGDQYSELAANEGYMKTLRQQTLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNTGLSAEDFSSFLD---KQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                         D + +     + G+  + + Q L  Q     ++             
Sbjct: 120 AIFSTPAFQVDGKFDNNHYNALVIQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                     K    E E+ +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVSQQRVVREATIDVQALAAKQQATEQEVASYYEQHKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                             +  +        
Sbjct: 240 AAAMQKPVTDADVQSYYDQHQDEFTQPQRSRYSIIQTKTEDEAKAVLDALNKGGDFATLA 299

Query: 220 EKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++ I    + G   +L E+ +  + +N   K +   +    +  G     + D +  
Sbjct: 300 KEKSADIISACNGGDMGWLEEATMPDELKNAGLKEKGQLSGVIKSSVGFLIARLDDVQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             +    +   ++A+    K         +K+   A 
Sbjct: 360 KVKPLSEVHDDIAAKVKQEKALDAFFALQQKVSDAAN 396


>gi|326316510|ref|YP_004234182.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323373346|gb|ADX45615.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 642

 Score = 99.4 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 41/406 (10%), Positives = 103/406 (25%), Gaps = 102/406 (25%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK-- 58
           M   +       + ++    ++  F +V I     +   S +   ++G  IT  D     
Sbjct: 1   MFESIRKHSKVVM-IVLFLLIIPSFVLVGID-RNYFTSKSAVVARVDGHDITQDDWDNAH 58

Query: 59  RIALLKLQKINGEL----------EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
           R+   +++  +  +              ++ L+ + + +    K  +      +      
Sbjct: 59  RMETDRIRAQSPSVDARLLDSPRARYATLERLVRDRVMQAAAVKMHLVTSDAQLARTLQG 118

Query: 109 HAR-------NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                     +  L AE + + +  QG+    F+  +  +     V+             
Sbjct: 119 IPAIAALKRPDGSLDAEAYRALVGSQGLTPEGFENNVRRELSLSQVMGGVMGSAFAAQEP 178

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYL--------- 179
                                 DF  K    + E+ A  +  +    +            
Sbjct: 179 ARLALDSLYQRREIRVARFDAKDFAAKVTPTDDELQAYYKAHEAQFRQPEHADVQYVVLD 238

Query: 180 -------------------------------IRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
                                           R     I   K       +K    A+  
Sbjct: 239 LDAVRASITLSEDDLRSYYKENLERLAGKEERRASHILINAPKDAPAADREKAKARAQAL 298

Query: 209 RLRLPKDCNKLEKFA-----SKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYV 262
             ++ K  N   + A           S G   +    D+   F++      + + ++   
Sbjct: 299 LEQVRKAPNTFAEVARKNSQDSGSAPSGGDLGFFKRGDMVKPFEDAAFSMKKGDISDLVE 358

Query: 263 TQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
           ++ G   I + D +    +      + A+      ++       +L
Sbjct: 359 SEYGYHIIQLNDVK--TPKQPTFEEVRAKLETEAKQQQAQRKFAEL 402


>gi|295096773|emb|CBK85863.1| Parvulin-like peptidyl-prolyl isomerase [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 623

 Score = 99.4 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/396 (11%), Positives = 104/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  + SY     ++     +NG+ I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSSYLIGGGANY-AAKVNGQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           A  + +                     L +  +  LI E L  Q  +  G+      V  
Sbjct: 60  AGERNRMQQQLGDQYSELAANEGYMKNLRQQTLNRLIDEALLDQYAKSLGLGISDEQVKK 119

Query: 105 FFVQ---HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF--------- 152
                     N       ++S +++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFSTQAFQSNGKFDNARYNSIVNQMGMTADQYAQALRNQLTTQQLINAVVGTDFMLKGE 179

Query: 153 ------------------------MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                     K    + E+ A  ++ KN  +     R     + 
Sbjct: 180 TEELAALVAQQRVVREATIDVNALAAKQQVSDAEVNAYYEQNKNNFISPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q      +     ++                                +        
Sbjct: 240 AAAMQENATDAEIQSYYDQHQDQFTQPQRNRYSVIQTKTEAEAKAVLDELNKGADFATLA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK--R 276
           +  ++  I   + G   +L ES    + +N   K +   +    +  G     + D    
Sbjct: 300 KAKSTDIISAKNGGDMGWLEESTTPDELKNAGLKEKGQLSGVIKSSVGFLVARLDDIVAA 359

Query: 277 DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
                  ++  ++A+    K         +K+   A
Sbjct: 360 KTKPLADVRDDIAAKVKQEKALDAFYALQQKVSDAA 395


>gi|261822503|ref|YP_003260609.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Pectobacterium
           wasabiae WPP163]
 gi|261606516|gb|ACX89002.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pectobacterium
           wasabiae WPP163]
          Length = 627

 Score = 99.4 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 37/398 (9%), Positives = 109/398 (27%), Gaps = 87/398 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ ++ +  +    ++  F +  +  Y            +NG+ IT G + + +
Sbjct: 1   MMDNLRTAANNVVLKIILALIIASFVLTGVGDYLIGGSGDY-AAKVNGQEITRGQLEQAV 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + ++                   +L K A+ +LI ETL  Q   K G+      +  
Sbjct: 60  QNERSRQQEALGENFSILASNDGYMQQLRKQALSQLIDETLLDQYANKLGLNISDEQIRQ 119

Query: 105 FFVQ---HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                     N     E +   + + G+  + + Q L  Q     +++            
Sbjct: 120 AIFDVPAFQTNKHFDNEKYLDQVRRLGVTPDMYAQMLRKQLTSQQLIRGFGNTAFLLPQE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV----- 183
                                          + E+ +   + K   +     +       
Sbjct: 180 IDNLVKLAAQDRVVRVATIDVAAKAKALTVADDEVQSYYDQNKGRFIAPEEFKVSYITLD 239

Query: 184 --------------LFSIPDNKLQNQGFVQKRIKDAEESRLR------------LPKDCN 217
                         +    +    +    +++     + +                    
Sbjct: 240 AASIMDNVKIDDKAINDFYEQNKNDYSQPERKKFSVIQVKNEADATSVLDALKQGGDFAT 299

Query: 218 KLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
             ++ ++  I   + G   ++ E+    + +      +   ++   +  G   + + D +
Sbjct: 300 LAKEKSTDIISRRNGGDLGWMDENSTIDELKQAKLAEKGQVSSAIKSSVGYLIVRLDDVQ 359

Query: 277 DLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
               +    ++A ++ +    K +       +K+   A
Sbjct: 360 PQQVKPLSDVRAEIAEKVKHEKAQDGFYALQQKVSEAA 397


>gi|152968976|ref|YP_001334085.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238893390|ref|YP_002918124.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Klebsiella
           pneumoniae NTUH-K2044]
 gi|150953825|gb|ABR75855.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238545706|dbj|BAH62057.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 624

 Score = 99.4 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 41/396 (10%), Positives = 109/396 (27%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y      +     +NG+ I  G     +
Sbjct: 1   MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLIGGGKNY-AAKVNGQEIGRGQFENAV 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           A  + +                     + +  +  LI E+L  Q   + G++     V  
Sbjct: 60  ASERNRMQQQLGDQFSELAANENYMKTMRQQVLNRLIDESLLDQYARELGLSISDEQVKQ 119

Query: 105 FFVQHAR---NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
              Q      N     + FS  + + G+  + + Q L  Q     ++             
Sbjct: 120 AIFQTQAFQTNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFMLPGE 179

Query: 152 -----------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                     K    + EI A  Q+ +   +     R     + 
Sbjct: 180 SDQLAALVSQQRVVREATINVNALAAKQTASDEEINAFWQQNQARFMAPEQFRVSYIKMD 239

Query: 189 DNKLQNQGFVQKRIKDAEESRLRL-----------------------------PKDCNKL 219
              +Q     ++     ++ + +                                     
Sbjct: 240 AASMQESASDEEIQSWYDQHKDQFTQPQRNRYSVIQTKTEADAKAVLAELQKGADFATLA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   ++ ++   P+ ++   K +   +    +  G     + D +  
Sbjct: 300 KEKSTDIISARNGGDMGWMEDASTVPELKDAGLKEKGQLSGVIKSSVGFLVARLDDVQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 QVKPLADVRNDIAAKVKQEKALDAYYALQQKVSDAA 395


>gi|315293370|gb|EFU52722.1| PPIC-type PPIASE domain protein [Escherichia coli MS 153-1]
          Length = 428

 Score = 99.4 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 106/311 (34%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--------L 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  N
Sbjct: 67  RHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYN 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + I  +V  N+   +   L  E+ +  Q++ N       +      IP  + 
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPEN 186

Query: 193 QNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                V +    A     +              ++    ++ G+  +    +L   F   
Sbjct: 187 PTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                + +   P  +  G   + + D R    ++        ++  + +P   ++     
Sbjct: 247 LSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVK 306

Query: 305 VKKLRSNAIIH 315
            +++   A I 
Sbjct: 307 REQI--AADIK 315



 Score = 83.6 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 93/287 (32%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q  N       +  L    +   E   S    ++ +  
Sbjct: 143 NNEVRRRITI--LPQEVESLAQQVGNQNDASTELN-LSHILIPLPENPTSDQVNEAESQA 199

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V  ARN     +   +    Q   +     +  IQ +     +              
Sbjct: 200 RAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPI 259

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   + + KNI+V E   R +L          Q  V KR + A + +   
Sbjct: 260 RSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARV-KREQIAADIKSGK 318

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYI 270
                  ++F+         G   +       P F++   + ++   + P  +  G   I
Sbjct: 319 TTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLI 378

Query: 271 AICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R++   + A K          K  +  A ++++ R++A +  
Sbjct: 379 ELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKI 425


>gi|261344779|ref|ZP_05972423.1| hypothetical protein PROVRUST_06044 [Providencia rustigianii DSM
           4541]
 gi|282567224|gb|EFB72759.1| peptidylprolyl cis-trans isomerase SurA [Providencia rustigianii
           DSM 4541]
          Length = 440

 Score = 99.4 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 36/305 (11%), Positives = 96/305 (31%), Gaps = 17/305 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++        S  +     ++   +N  V+ + D+   I  +KL   N          L
Sbjct: 7   LILGLVFASSASLAAPQQMDKVAAVVNNGVVLESDVQNMINTVKLNARNSGQQVPDDQTL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ L+++ +  Q   +  +      VN      AR  GL+       L   GI   
Sbjct: 67  RSQIIERLVMDNIMLQMANQMQLNIPEEAVNATIEDIARQNGLTLAQMEKRLVADGINMA 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + +  +V  N+   +   L  E+ A   +M +    E  +      IP  + 
Sbjct: 127 KYRSEIRKEMLLAEVRNNEVRRRITILPQEVDALSNQMDSQANAEMGVNLSHILIPLPEN 186

Query: 193 QNQGF---VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                    +  +        +          +++    +  G   +    +L   F + 
Sbjct: 187 PTPEQLATAEALVSKVLSELKKGSDFGKLAIAYSADPQALKGGNMGWSRLQELPVVFSDQ 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDK-----RDLGGEIALKAYLSAQNTPTKIEKHEAE 303
                + +   P  +  G   + + +      + +        ++  +++P   +    +
Sbjct: 247 LKSSKKGDIVGPIRSGVGFHILRVNEISGGSQQPISVTEVKARHILLKSSPIMDDTMARQ 306

Query: 304 YVKKL 308
            + +L
Sbjct: 307 KLTQL 311



 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 54/150 (36%), Gaps = 4/150 (2%)

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HD 228
            + I+V E   R +L              QK  + ++E R          ++ +      
Sbjct: 278 QQPISVTEVKARHILLKSSPIMDDTMA-RQKLTQLSQEIRNGKISFEEAAKENSEDPGSA 336

Query: 229 VSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKA 286
           +  G+  + +     P F++  +K  +   + P  +  G   I + D R++   + A K 
Sbjct: 337 LKGGELGWNMPDVYDPAFRDALMKLKKGEISQPVPSSFGWHLIQLEDTRNVDKTDAAKKD 396

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                    K  +    ++++ R+ A ++ 
Sbjct: 397 QAYRLLFNRKFNEEAQTWMQEQRAAAYVNI 426


>gi|114704782|ref|ZP_01437690.1| survival protein sura precursor (peptidyl-prolyl cis-trans
           isomerase sura) [Fulvimarina pelagi HTCC2506]
 gi|114539567|gb|EAU42687.1| survival protein sura precursor (peptidyl-prolyl cis-trans
           isomerase sura) [Fulvimarina pelagi HTCC2506]
          Length = 308

 Score = 99.4 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 106/272 (38%), Gaps = 5/272 (1%)

Query: 47  NGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF 106
           NG  +T   I +R A LKL+++ G   + A  ELI E LK+QEI++ G+      VN  +
Sbjct: 35  NGMPVTTYQIRQRAAFLKLRRVGGNTTQKATDELIDEALKRQEIQRQGVNIPDEEVNAAY 94

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
           +  A+   LS    +  L   G     FK Y+ +Q  W          +    E +    
Sbjct: 95  LNFAKGNNLSEAQLAEVLGSAGFSPQAFKDYIRVQMGWGQAASRRIQREERLTEQDAVQR 154

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
                                     Q    +  R ++A+  R R     +    FA  +
Sbjct: 155 MLAQGGEKPSTTEYTLQQVIFVIPNGQRGAMLANRKREAQAMRQRFQSC-DSTLAFAQGL 213

Query: 227 HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK 285
            DV++     + + +L   ++   ++ S    T    T +GVE+I +C+ R +  + A +
Sbjct: 214 RDVTVRDLGRVAQPELPSLWKEDVMQTSPGRATPTKETDRGVEFIGVCNARQISDDRAAQ 273

Query: 286 AYLSAQNTPTKIEKHE---AEYVKKLRSNAII 314
               A++  +         A  +KKLR  A I
Sbjct: 274 MVFQARDMESLNGDGSGADAALLKKLRDEAQI 305


>gi|285808215|gb|ADC35749.1| PpiC-type peptidyl-prolyl cis-trans isomerase [uncultured bacterium
           293]
          Length = 392

 Score = 99.4 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 103/291 (35%), Gaps = 17/291 (5%)

Query: 37  AMSSRIRTTINGEVITDGDISKRI------ALLKLQKINGELEK---IAVQELIVETLKK 87
            +  R+  ++NG +++  +  +R       A +   ++   L       +QE I + L  
Sbjct: 28  EVLERVIVSVNGGIVSQSEFEQRQIAAVQGARIGPSEVEKYLRDNNARILQEAIDDLLLV 87

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF-SSFLDKQGIGDNHFKQYLAIQSIWPD 146
           Q   + G    +  V+       ++  + ++      L ++G+  +  ++ +  Q     
Sbjct: 88  QRASELGFKVPTTYVDETIEGIKKDNNIPSDQDLQDQLRREGMTLSDLRRNIERQVSRRW 147

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           V++ +   K    + E  A  QK K    +       +              + R +D  
Sbjct: 148 VLQRELEGKTSVSDAEARAEYQKNKAEYDKPGT----VTLREIVVGGEDAATRARAEDVA 203

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
           +            +  +S     + G+   L  +DL P    ++    +   T+P    K
Sbjct: 204 KRARAGEDFAALAKSTSSAASAKNGGELGQLSHTDLAPDLARIVFALPKGGVTDPVPVAK 263

Query: 266 GVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           G   + + D+ + G      +KA ++ +    K       Y++ LR  A++
Sbjct: 264 GFRILKVEDRSEGGLVPFEQVKAEITRKLVQEKASGEYDRYIEGLRKXALV 314


>gi|261341042|ref|ZP_05968900.1| peptidylprolyl cis-trans isomerase D [Enterobacter cancerogenus
           ATCC 35316]
 gi|288316907|gb|EFC55845.1| peptidylprolyl cis-trans isomerase D [Enterobacter cancerogenus
           ATCC 35316]
          Length = 624

 Score = 99.4 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 44/396 (11%), Positives = 104/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  + SY     ++     +NG+ I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSSYLIGGGANY-AAKVNGQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           A  + +                     L +  +  LI E L  Q  +  G+      V  
Sbjct: 60  AGERNRMQQQLGDQFSELAANEGYMNNLRQQTLNRLIDEALLDQYAKNLGLGISDEQVKK 119

Query: 105 FFVQ---HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF--------- 152
                     N       ++S +++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFSTQAFQSNGKFDNTRYNSIVNQMGMTADQYAQALRNQLTTQQLINAVVGTDFMLKGE 179

Query: 153 ------------------------MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                     K    + E+ A  ++ KN  V     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQQVSDAEVNAWYEQNKNSFVAPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              LQ            ++                                +        
Sbjct: 240 AAALQGNASDADIQSYYDQHQDQFTQPQRNRYSVIQTKTEADAKAVLDELNKGADFATLA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           +  ++  I   + G   +L  +    + +N   K +   +    +  G     + D +  
Sbjct: 300 KAKSTDIISAKNGGDMGWLEAATTPDELKNAGLKDKGQLSGVIKSSVGFLVARLDDVQAA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KTKPLAEVRDEIAAKVKQEKALDAFYALQQKVSDAA 395


>gi|163743160|ref|ZP_02150542.1| PPIC-type PPIASE domain [Phaeobacter gallaeciensis 2.10]
 gi|161383577|gb|EDQ07964.1| PPIC-type PPIASE domain [Phaeobacter gallaeciensis 2.10]
          Length = 421

 Score = 99.4 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 97/259 (37%), Gaps = 6/259 (2%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLK 86
           ++   +  +         T+N  V+T+ ++ +R   L L +  G+ +K A ++LI++ LK
Sbjct: 32  VMFGPAPAAAQGLFAPAVTVNDAVVTNYELQQRARFLTLLRDPGDPQKKAREDLILDRLK 91

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
              + ++GI      +     + A    LS ++F + L + G+     + +  +   W +
Sbjct: 92  LDVLAQAGIEPTEEEIVEGMTELAGRANLSLQEFLNVLGQNGVAPETLRDFTRVGIAWRE 151

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
            V   ++ +    E EI        +  V   L   ++     N  Q +   Q+      
Sbjct: 152 YVAARYLAQARPSEEEIDRAMGLAGSGGVEVLLSELIMPINAQNAAQVEEVAQQ-----V 206

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQK 265
                        +++++     S G+  ++  ++L PQ Q ++        T P     
Sbjct: 207 SRITTTAAFSQAAQQYSATATRQSGGRLPWMPLTNLPPQLQQVVLGLRPGEVTAPLPLDG 266

Query: 266 GVEYIAICDKRDLGGEIAL 284
            V    + D R+  G    
Sbjct: 267 AVALFQLRDLRETSGAAPS 285


>gi|162449311|ref|YP_001611678.1| peptidyl-prolyl cis-trans isomerase SurA [Sorangium cellulosum 'So
           ce 56']
 gi|161159893|emb|CAN91198.1| peptidyl-prolyl cis-trans isomerase SurA [Sorangium cellulosum 'So
           ce 56']
          Length = 338

 Score = 99.4 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 33/314 (10%), Positives = 89/314 (28%), Gaps = 31/314 (9%)

Query: 33  YKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI------------NGELEKIAVQEL 80
                +S RI   +    I   D+ +R     LQ                ++ +  +Q++
Sbjct: 22  LAHAVVSERIVAVVGDRAILLSDLRQRARPFLLQIQARVPPGAQQAAAESQVFRDLLQKM 81

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED-FSSFLDKQGIGDNHFKQYLA 139
           + E L+ Q  EK+ +   S  +   F   A    ++ E+ F +     G+ +  ++  + 
Sbjct: 82  VDEELEGQAAEKANVRVTSEEIENAFRNIAAAEQMTVEELFRTARASSGLTEQEYRDEIR 141

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQK---MKNITVREYLIRTVLFSIPDNKLQNQG 196
            Q +   +++     +    E ++ +   +    +      +    VL  +P +  +   
Sbjct: 142 RQILEGKMLQLRVKGRVRITEQDVRSAFDRLVREERRRRDYHPAWIVLRVLPGSSAEAVE 201

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLES------------DLH 243
             +       E             +F+         G                       
Sbjct: 202 ERRALAAALAERARGGEDFAALARQFSDDTATREEGGDLGVRAPQGTQAAVTGQRQVMAP 261

Query: 244 PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHE 301
                L+         P         + +  ++        A +  +  +     + K +
Sbjct: 262 ELEAALMAIEPGGVAGPMRAGDAFVIMKLLSRQPSRFTTLEAARPEVLQRLQAEIMTKAK 321

Query: 302 AEYVKKLRSNAIIH 315
            +++  L+    + 
Sbjct: 322 QKWLDDLKRGTHVE 335


>gi|229591358|ref|YP_002873477.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens SBW25]
 gi|229363224|emb|CAY50307.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens SBW25]
          Length = 624

 Score = 99.4 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 50/403 (12%), Positives = 111/403 (27%), Gaps = 90/403 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSR-IRTTINGEVITDGDISKR 59
           M   +  +   +I       ++ +     I +    + +S+     +NGE IT  ++S+ 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIVALMAFTGIEAIFQASGNSKQDVAKVNGEEITQTELSQA 60

Query: 60  IALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF 106
           + + + Q +                L + A++ LI   L  Q    S   F    ++   
Sbjct: 61  VDMQRRQLMQQLGKDFDASLLDEKLLREAALKSLIDRKLLLQGAADSKFGFSEAALDQVI 120

Query: 107 ---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML--------- 154
               +   +   +AE F   + + G     F+Q L  + +   V                
Sbjct: 121 LQTPEFQVDGKFNAERFDQVIRQLGYSRLQFRQMLTQEMLIGQVRAGIAGSGFVTDSEVL 180

Query: 155 ----------------------KYGNLEMEIPANKQKMKNITVREYLIRT---------- 182
                                      + E+ A   +     +    +            
Sbjct: 181 AFARLEKQTRDFATVNIKANPAAVKLTDDEVKAYYDQHAKEFMTPDQVVIDYLELKKSSF 240

Query: 183 ---------VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL-------------- 219
                     L +    +  N    ++      E   ++     K               
Sbjct: 241 FDQVAVKDDELQAAYQKETANLAEQRRAAHILIEVNDKVTDAQAKAKIEEIQARLAKGEK 300

Query: 220 -----EKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAI 272
                ++F+       + G   +       P F+  L   S++  + P  +  G   I +
Sbjct: 301 FEALAKEFSQDPGSASNGGDLGFAGPGVYDPDFETALYALSKDQVSAPVRSTFGWHLIKL 360

Query: 273 CDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                  +    +LK  L+ +    ++E+   E  K+L   A 
Sbjct: 361 LGVEAPQVPTFASLKDKLTKELKTQQVEQRFVEATKQLEDAAF 403


>gi|149280301|ref|ZP_01886423.1| peptidyl-prolyl cis-trans isomerase (survival protein) [Pedobacter
           sp. BAL39]
 gi|149228990|gb|EDM34387.1| peptidyl-prolyl cis-trans isomerase (survival protein) [Pedobacter
           sp. BAL39]
          Length = 454

 Score = 99.4 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 36/308 (11%), Positives = 92/308 (29%), Gaps = 14/308 (4%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--L 72
           +     V      + + +        ++   +   VI   DI+++ A            +
Sbjct: 1   MKKFLVVAGGLICLFLNTQAQRQSVDKVVAVLGSNVILLSDINQQYAQYLNSGNPSNESV 60

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           + + ++EL+   L KQ+ E   +  D + V+    Q  R     A               
Sbjct: 61  KCLILRELLTTKLLKQQAEIDSVMVDDSQVDEEVDQRMRYQIQRAGGEERLEQFLNRSIL 120

Query: 133 HFKQYLAIQSIWP---DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
            +K  +  +         +K +         +E+       K  ++ +      +  I  
Sbjct: 121 QYKDEIRPEIKEQMISRKMKGNITQDVSVTPLEVKKYFDSYKKDSLPDIPTEFEVGEIVL 180

Query: 190 NKLQNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQ 245
           +    +   Q+     +  RLR           + ++         G   +   + +  +
Sbjct: 181 HPTLTKAEKQRFYDKIDALRLRVKSGEDFAFLAKSYSEDPGSAPDGGDLGFFDRAQMVKE 240

Query: 246 FQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT-KIEKHEAE 303
           F     K      +  + T+ G   + + ++R   GE     ++  +   T +  +    
Sbjct: 241 FTAWAFKLKAGEISPVFETEHGYHILQVIERR---GEQVQARHILIRPQNTPQSMERLKL 297

Query: 304 YVKKLRSN 311
           +   +  N
Sbjct: 298 HADSIYKN 305


>gi|312961785|ref|ZP_07776283.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           fluorescens WH6]
 gi|311284044|gb|EFQ62627.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           fluorescens WH6]
          Length = 624

 Score = 99.0 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 49/403 (12%), Positives = 112/403 (27%), Gaps = 90/403 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSR-IRTTINGEVITDGDISKR 59
           M   +  +   +I       ++ +     I +    + +++     +NGE IT  ++S+ 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIVALMAFTGIEAIFQASGTNKQDVAKVNGEAITQPELSQA 60

Query: 60  IALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF 106
           + + + Q +                L   A++ LI   L  Q    S   F    ++   
Sbjct: 61  VDMQRRQLMQQLGKDFDASLLDEKLLRDAALKGLIDRKLLLQGAADSKFGFSEAALDQVI 120

Query: 107 ---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML--------- 154
               +   +   +AE F   + + G     F+Q L  + +   V                
Sbjct: 121 LQTPEFQVDGKFNAERFDQVIRQLGYSRLQFRQMLTQEMLIGQVRAGIAGSGFVTDAEVL 180

Query: 155 ----------------------KYGNLEMEIPANKQKMKNITVREYLIRT---------- 182
                                      + E+ A   +     +    +            
Sbjct: 181 AFARLEKQTRDFATVNLKANPAAVKLTDDEVKAYYDQHAKEFMTPDQVVIDYLELKKSSF 240

Query: 183 ---------VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL-------------- 219
                     L +  + +  N    ++      E   ++ +   K               
Sbjct: 241 FDQVTVKDDELQAAYEKETANLAEQRRAAHILIEVNDKVTEAQAKAKIEEIQARLAKGEK 300

Query: 220 -----EKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAI 272
                ++F+       + G   +       P F+  L    Q+  + P  +  G   I +
Sbjct: 301 FDALAKEFSQDPGSANNGGDLGFAGPGVYDPDFETALYALKQDQVSAPVRSTFGWHLIKL 360

Query: 273 CDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                 ++    +LK  L+ +    ++E+   E  K+L   A 
Sbjct: 361 LGVEAPEVPTFASLKDKLTRELKAQQVEQRFVEATKQLEDAAF 403


>gi|215485522|ref|YP_002327953.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           O127:H6 str. E2348/69]
 gi|215263594|emb|CAS07924.1| peptidyl-prolyl cis-trans isomerase D (rotamase D) [Escherichia
           coli O127:H6 str. E2348/69]
          Length = 623

 Score = 99.0 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 104/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKNLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|328950420|ref|YP_004367755.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450744|gb|AEB11645.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinithermus
           hydrothermalis DSM 14884]
          Length = 308

 Score = 99.0 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 30/320 (9%), Positives = 90/320 (28%), Gaps = 35/320 (10%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL------------ 63
           +  + ++ +  ++P     + A    +   ++GE I   ++  +  L             
Sbjct: 1   MKRFLMVGLLILLPF----AAAQQDVVVAEVDGEPILLSELDLQFELFLRGVFGQQGVPI 56

Query: 64  --KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
             +L+     L+   ++ L+ + +  Q   K+G+      V    +        SA   S
Sbjct: 57  TDELRARFAPLKAQILERLVRDRVVLQAARKAGLAASEEAVRERLMGIKEQFPDSAAFES 116

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVK-NDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
           +        ++   Q +     + + +      L+     M +     +       E  +
Sbjct: 117 ALEASGIPSEDVLLQLMREAQTYNNYLDWLRPQLRISEPAMRLYYYLDRASFAEPEELCV 176

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
             +L    +        +                  +   + +     + + G       
Sbjct: 177 SHILVRTREEAEAVLERLNA-----------GEAFEDLANQLSIDPGSNTTGGALGCHPA 225

Query: 240 SDLHPQFQNLLKK-SQNNTT-NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
                 F+   ++      T  P  ++ G   I +   R           +  +     +
Sbjct: 226 GTFIEPFERAARRLEVGELTRTPVESEFGFHVIRLDGFRPARV--PPFEAVRGEIEARFL 283

Query: 298 EKHEAEYVKKLRSNAIIHYY 317
           ++   +++  L   A +  +
Sbjct: 284 DRAVRQHLDYLFERAEVRTF 303


>gi|109899437|ref|YP_662692.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas
           atlantica T6c]
 gi|109701718|gb|ABG41638.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas
           atlantica T6c]
          Length = 627

 Score = 99.0 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 39/404 (9%), Positives = 104/404 (25%), Gaps = 98/404 (24%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++         +     V++ F    + SY + + +      +N + I+  D+ +  
Sbjct: 1   MLERIREGTQGTWAMAILGLVILSFVFAGVGSYIN-SSAETAAAKVNDDTISQADLERAY 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +  +                 +  +  +  LI + L +Q     G+      +  
Sbjct: 60  QNERGRMESQYGEAFAALTADSAYLQQFRQGVLDRLIGDKLLEQAAIDMGLRVSDAQIKQ 119

Query: 105 FFVQHARNTGLSAEDFSSFLD---KQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
             V           D   +     + G   N F+ Y+ +      +              
Sbjct: 120 AIVAMPEFQFDGKFDNERYTAVLRQAGFQPNEFRDYMRVDMTRRQLSNALLGSEFTLAAE 179

Query: 152 -----------------------FMLKYGNLEMEIPANKQKMKNITVR------------ 176
                                  F       + ++    Q                    
Sbjct: 180 TTQAYKLQQQTRDARYLTIPAESFKDGINVSDDDVENYYQANITQFDTEQKVSLAYVELS 239

Query: 177 ----------------EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK-- 218
                           +Y  + +       + +    + +   D + +R +     +K  
Sbjct: 240 VDDLLTDIVVSDDEALQYYEQNIQDFRTQEERRASHILIEFGDDEQGARQQAEDVLSKIN 299

Query: 219 ----LEKFASKIH-----DVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGV 267
                 + A +         + G   +     + P F+       +  + ++   ++ G 
Sbjct: 300 DGGDFAELAKEYSSDTFSAENGGDLDWFSAGMMDPAFEEATYALANVGDVSSVVESEFGY 359

Query: 268 EYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
             I + D +  +      +K  + A+    + E+    Y K+LR
Sbjct: 360 HIIKLTDIKPEETSPFTDVKEDVIAKLKSERAEEEF--YAKQLR 401



 Score = 35.4 bits (79), Expect = 9.9,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 75/254 (29%), Gaps = 10/254 (3%)

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
           ++++  + +L  E  +++   K     +        +           + +    +  + 
Sbjct: 377 DVKEDVIAKLKSERAEEEFYAKQLRMAEVAFETPDTLDEVAAIAEVDVNTTVMFSQDSVP 436

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                  +  Q+   +++ +        L        +       R   +  V   I D 
Sbjct: 437 AAVNYPNVVAQAFSDELINDQVNSDVIELGDNHVMFVRVANYEAQRTKALEEVSPEINDI 496

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-- 248
            L  Q     +   AE   + +  + +  E   +K  +    +A     S + P      
Sbjct: 497 LLAEQAQQAAKEW-AETLLVDIKAEQDVSESLQAKAVEWQEQEAVARSGSQISPALVTAL 555

Query: 249 ----LLKKSQNNTTNPYVTQKG-VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAE 303
                 K+S       +    G V+ + + D  +L         L  + +  + +    E
Sbjct: 556 FKLTEDKESNAQVVELFNGDVGLVQLMKVNDGAELPSTDVAA--LQNRLSTMRAQFTYGE 613

Query: 304 YVKKLRSNAIIHYY 317
           +V  LR  A +  Y
Sbjct: 614 FVNALREQADVEIY 627


>gi|256545179|ref|ZP_05472545.1| foldase protein PrsA 1 [Anaerococcus vaginalis ATCC 51170]
 gi|256399220|gb|EEU12831.1| foldase protein PrsA 1 [Anaerococcus vaginalis ATCC 51170]
          Length = 339

 Score = 99.0 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 95/286 (33%), Gaps = 23/286 (8%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKL-QKINGELEKIAVQELIVETLKKQEI 90
           S K   +       + GE IT       ++          +L+   VQ L+ + L   ++
Sbjct: 40  SAKGEKLPDDAVALVGGEKITKDSYKDEMSFYSAMLASRQQLKPSIVQMLVQDKLIADDM 99

Query: 91  EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
           +K+ +  D   ++  F+Q+ +  G   +      D     D   +     +       + 
Sbjct: 100 KKNNVKVDDKALDDKFLQYVQQFGGQEKFDKMLEDYNMSSDKFKETIKKDEIYQKH--RA 157

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
            F  K    E +I    ++ K+   +      ++              +   K  +E   
Sbjct: 158 WFEEKNPVDEKQIKKYYEENKDTLSQVKASHILV------------ADEATAKQVKEKLD 205

Query: 211 RLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVE 268
                    ++++    +    G   Y  +  +  +F +      ++  ++P  T  G  
Sbjct: 206 NGEDFAKLAKEYSKDTANAEKGGDLGYFTKDKMVKEFADKAFSMKKDEVSDPVKTSYGYH 265

Query: 269 YIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            I + DK+D     ALK  +S      K     ++Y+  L + A +
Sbjct: 266 IIKVTDKKDSP--EALKDEISKTLNDKK----YSDYLTDLFNKAKV 305


>gi|218779881|ref|YP_002431199.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761265|gb|ACL03731.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 327

 Score = 99.0 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 91/297 (30%), Gaps = 17/297 (5%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN------GELEKIAVQELIVETLKKQ 88
             A    +   +NG  I    I+    LL   +          L+K  ++ +I   +  Q
Sbjct: 27  GMAEPGEVLARVNGVNIYGWQITLAENLLFGSRNPHVHTESQTLKKEILKNVIDMEVLFQ 86

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
           + +K GI  D   V+ F   +  +   S  ++ S L      +           +    +
Sbjct: 87  DAQKRGIEPDKRLVDGFVWNYKASF-PSLAEYQSALRGMNATEREIVDLAGRIVVMGACI 145

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNIT--VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           +  +       E E      +  N     R   +R +L      K  +    + R +   
Sbjct: 146 EERYGALLTPTEAEAQKYYDENPNDFVLPRALRVRHILIKKDAAKGVDGKTAKARAQQIL 205

Query: 207 ESRLRLPKDCNK-LEKFASKIHDVSIGKAQYLLES-----DLHPQFQNLLKKSQNNTTNP 260
               +  +       + +        G   Y+ E      +L P  + +LK       NP
Sbjct: 206 ARVKKGGEPFAIIAREASDGPEKDQGGDMGYVSEGALKNTELEPLEKVILKLQPGEIGNP 265

Query: 261 YVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             T  G   +   D+R   +     +K  L +     K+ +   +   +L+    I 
Sbjct: 266 VETDIGFHIVKALDERPESITPFETVKERLISALQKKKMVEALNQLASELKPGFDIE 322


>gi|157164251|ref|YP_001467105.1| holo-[acyl-carrier-protein] synthase [Campylobacter concisus 13826]
 gi|112801387|gb|EAT98731.1| foldase protein PrsA [Campylobacter concisus 13826]
          Length = 272

 Score = 99.0 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 91/301 (30%), Gaps = 42/301 (13%)

Query: 25  FCIVPIVSYKSWAMSSR-IRTTINGEVITDGDISK----RIALLKLQKINGELEKIAVQE 79
           F    ++S  +    +  +  T++G+ I D DIS      +      K+    +K  + +
Sbjct: 4   FLFPAVLSLAAAVTLNAAVVATVDGDAINDSDISALLSAAMPGFDASKLQPNEKKRIIDD 63

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           LI   L  ++ + SGI  D + +                                    A
Sbjct: 64  LINRKLLLKDAKASGIEKDVDYIKAV-------------------------------KAA 92

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
            + I  ++            + ++     K K    +    R     + D K  N    Q
Sbjct: 93  QEGIAVELYMRKLFDGIKVSDSDLRDFYNKNKASMNQPAQARARHILVEDEKTANDIIAQ 152

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT-- 257
            +    E    +  +  ++  K   K      G+  +  +S +   F +      N T  
Sbjct: 153 LKNLKGEVLTKKFAELASQ--KSIDKGSAAHGGELGWFGQSQMVKPFADAAFSMANGTVS 210

Query: 258 TNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           T P  TQ G   I   D +  G       K  +       K +    +  + LR  A I 
Sbjct: 211 TKPVKTQFGYHVILKEDGKAAGTVSFEQAKPEIEQAVKMEKFQAAVRQKSEALRQKAKIE 270

Query: 316 Y 316
           Y
Sbjct: 271 Y 271


>gi|116254033|ref|YP_769871.1| foldase/peptidyl-prolyl cis-trans isomerase [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115258681|emb|CAK09785.1| putative foldase/peptidyl-prolyl cis-trans isomerase [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 293

 Score = 99.0 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 85/301 (28%), Gaps = 49/301 (16%)

Query: 22  LIIFCIVPIVSYKSWAMSSR-IRTTINGEVITDGDISKRIALL---KLQKINGELEKIAV 77
           L +      V+ ++ A +   +   +    I   ++   +A L     Q  + + +  A+
Sbjct: 7   LAVLAFATFVALQAPAYADDAVIAKVGTLEIHQSELDLAVANLDPQLAQLPDDQKKVAAL 66

Query: 78  QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY 137
              I   L                               A D ++    Q        QY
Sbjct: 67  SAAIDVKLL------------------------------AADAAAEKLDQTDEFKKRMQY 96

Query: 138 LAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGF 197
           L+ + +     K   +      E++   +K+        E   R +L             
Sbjct: 97  LSDRELHNAYFKKHVVDIVTPDEVKARYDKEVAALPKQEEVHARHIL-----------VK 145

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNN 256
            +   KD  +            ++ ++  +    G   Y     +  +F++      +  
Sbjct: 146 TEDEAKDIIKQLDAGKDFAELAKEKSTDPNKSEGGDLGYFSRGRMVKEFEDAAFALEKGT 205

Query: 257 TTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            +  P  T  G   I + DKRD          +  Q     +     E + K +++A I 
Sbjct: 206 YSKTPVKTDFGFHVIKVEDKRDAPP--PPFEQVQDQVRQLVMRDKYLELLNKAKASAKIE 263

Query: 316 Y 316
            
Sbjct: 264 I 264


>gi|307721593|ref|YP_003892733.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979686|gb|ADN09721.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurimonas
           autotrophica DSM 16294]
          Length = 276

 Score = 99.0 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 89/301 (29%), Gaps = 41/301 (13%)

Query: 26  CIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK-------INGELEKIAVQ 78
            ++  +       S++   T+NG+ IT  D+   +      +             +  +Q
Sbjct: 6   MLLSALLLTGSIASAKTLVTVNGKAITQQDVDTELMNATQGRFNQVPADRQAAFRQQVLQ 65

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
           +LI + L   + +KSGI       + +                              +  
Sbjct: 66  QLIGKELIYNDAKKSGIINSKEYKSEY---------------------------KKLEQR 98

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
             + +   V +   +        E+     K K     +  +      +       +   
Sbjct: 99  MKKELAIQVWQKKLLDSIKISNKELKDYYNKNKEEFNEKESVHARHILVKAEDEAKKIIA 158

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNT 257
           Q +    E+ + +        +K ++       G   Y  +  + P F +      +   
Sbjct: 159 QLKSLSGEKLKEKF---IELAKKESTGPSGPKGGDLGYFSKGQMVPAFNDKVFSMKKGEV 215

Query: 258 T-NPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           T  P  TQ G   I + DK+         +KA++  +    K +    + +  L+  A I
Sbjct: 216 TLKPVKTQFGYHVIYVEDKKPSMTRSFDEVKAFIEQRLKMEKFKAVMKKKMDALQKKAAI 275

Query: 315 H 315
            
Sbjct: 276 K 276


>gi|294101095|ref|YP_003552953.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aminobacterium
           colombiense DSM 12261]
 gi|293616075|gb|ADE56229.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aminobacterium
           colombiense DSM 12261]
          Length = 282

 Score = 99.0 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 40/318 (12%), Positives = 91/318 (28%), Gaps = 48/318 (15%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSS--RIRTTINGEVITDGDISKRIALLKLQ 66
           +   +KLL    ++    +  +   K    S   ++   +    I   D+   I  L  Q
Sbjct: 1   MRKNVKLLIAMAIIATVVLSGVAGAKEVEKSDGDKVLAQVGDVEIKGQDVEDVIKSLDPQ 60

Query: 67  KI----NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
           +     N +  K  ++ELI   +  +  +++ +  D                        
Sbjct: 61  QRMYYENEQGRKAILEELINLEVFVRWAQENDVEKD------------------------ 96

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
                        + +  + +    ++  F       E E            +    IR 
Sbjct: 97  ------PIFIERLENIKREILRQVALEKMFG-NVSVSEKEARDYYTAHVTDFMIPSQIRA 149

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
               +           ++  +  EE +       +  +K++S       G   Y     +
Sbjct: 150 SHILV--------ENEEEAKRIREEIKTEKITFEDAAQKYSSCPSKAQKGDLGYFQSDQV 201

Query: 243 HPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEK 299
            P+F Q      +   + P  +Q G   I + DK+         +K  +       K  +
Sbjct: 202 VPEFSQAAGALKKGEISAPVKSQYGWHIIRLEDKKPGSLQPFEEVKGQIETNLLREKRAQ 261

Query: 300 HEAEYVKKLRSNAIIHYY 317
              +  ++LR    +  +
Sbjct: 262 IYTDETERLRKQYGVKVF 279


>gi|251772783|gb|EES53345.1| probable peptidyl-prolyl cis-trans isomerase [Leptospirillum
           ferrodiazotrophum]
          Length = 289

 Score = 99.0 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 40/320 (12%), Positives = 87/320 (27%), Gaps = 52/320 (16%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++F +   F + +     L +   + + S     +S  +   +    IT   +   I
Sbjct: 1   MNFRIFPTSGSFHRGM--ALPLTLLAGLSLTSGCHQTLSDNVVAKVGTREITKESLQSAI 58

Query: 61  ALLKL-QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
             + L       +    +  LI                                 L  E+
Sbjct: 59  KDMNLPSSAPASVPSDVLNRLID------------------------------NTLITEE 88

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
                           +    + +   ++K     K    + ++     K +    +   
Sbjct: 89  AEQEGLPNRPDIRKKLEDARNRILRQALIKTQVDDKVKVTDADVQGYFDKHRQEIKQ--- 145

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
                             V++ I   +++  R+     K + F+  I     G    + E
Sbjct: 146 -------------PGYVEVRQLIIPDQKTADRIVSSLRKKKGFSRAIEKFKGGPVGKIFE 192

Query: 240 SDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTK 296
             + PQF +        + T P   + G+ Y  I  +           KA ++   T   
Sbjct: 193 GTVPPQFAKFFFGVPAGSVTGPIALKDGIHYFKIDKQVPGKLLSFDQAKAGITQFLTSRM 252

Query: 297 IEKHEAEYVKKLRSNAIIHY 316
            +    +Y+  LR+   I  
Sbjct: 253 KQDLYQKYLNSLRAKTKIEI 272


>gi|289208891|ref|YP_003460957.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
           K90mix]
 gi|288944522|gb|ADC72221.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
           K90mix]
          Length = 289

 Score = 99.0 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 78/280 (27%), Gaps = 47/280 (16%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS 99
                 +N   IT  D+    A +          +  + E+I   L +QE  K G+  D 
Sbjct: 48  EDTVAIVNDRAITRADL-FTYAGMDEDPGLATQGEGVLDEVISLELLRQEALKRGLGDDP 106

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
                                               + +    +   +++        + 
Sbjct: 107 EIQR------------------------------ILKMVETNLLASMLMERIAEELEISE 136

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
           E      +++++ +   EY  R +L              +   ++               
Sbjct: 137 EDVEAEYERQVEYLRGTEYRARHIL-----------VEDEDSARELLAQLDDGADFAELA 185

Query: 220 EKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAICDKR 276
           E+ +         G   +     + P+F    +      TT+ P  +Q G   I + D R
Sbjct: 186 EEHSIDPGSAARGGDLGWFTPDGMVPEFAAATEALEPGETTDAPVQSQFGWHLIRLDDTR 245

Query: 277 DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           ++         + A+       +   E ++ LR+ A I  
Sbjct: 246 EVEV--PPLDEVRAEIIEILESRAIQEKLEALRAEATIEI 283


>gi|241761719|ref|ZP_04759806.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|260752284|ref|YP_003225177.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|241374027|gb|EER63560.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|258551647|gb|ACV74593.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 471

 Score = 99.0 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 47/291 (16%), Positives = 97/291 (33%), Gaps = 21/291 (7%)

Query: 44  TTINGEVITDGDISKRIALLKLQ----------KINGELEKIAVQELIVETLKKQEIEKS 93
             +NG +IT+ DI +R AL+             +         ++ LI ETL+ QE + +
Sbjct: 73  AIVNGTIITNTDIEQRFALILASAGGDVSRISEEDRNMARLQILRNLIDETLEIQEAKAN 132

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
            I      ++  F  +ARN   + E FS+ L   G      K+ +     W  ++     
Sbjct: 133 DIIITPTELDQIFEHYARNMKKTPEAFSADLQAIGSSAKSVKRQVEADMAWRRLLGRRVE 192

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL--- 210
                   E+     +MK    ++      +F   ++  + +   +      +  +    
Sbjct: 193 PFVNISNEEVQNIINRMKAAKGKDEYHIAEIFFSANDTNRAEVRAKANKIQDQILQRGNT 252

Query: 211 --RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGV 267
             R+        +++        G   ++    L      ++K     +   P  T  G 
Sbjct: 253 NERMGLFSAFASQYSEASSAARGGDMGFIQAEQLPDALAAVVKNMPVGSLMGPIETPGGF 312

Query: 268 EYIAICDKRDLGGEIALKAYLSAQNTPTKI-----EKHEAEYVKKLRSNAI 313
             +A+ +K+ + G     A ++ +           +    E   KLR    
Sbjct: 313 SIVALLEKQQILGIDPKDAIVALKQIYVNFPPGTSQNVADEKTAKLRDATK 363



 Score = 44.7 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 237 LLESDLHPQFQNLLKK-SQNNTTNPYVT-QKGVEYIAICDKRDLGG-EIALKAYLSAQNT 293
           +    + P  QN++ K     +T P+ + Q+GV  + +C + D    +      +  Q  
Sbjct: 388 ISIRSMPPLLQNMVAKLQVGESTLPFGSIQEGVSVLVVCGRDDPKVAKQPNFQQIHNQLQ 447

Query: 294 PTKIEKHEAEYVKKLRSNAIIHY 316
             ++ K    Y++ LR +AII Y
Sbjct: 448 EDRVNKRAIRYLRDLRRDAIIDY 470


>gi|323701603|ref|ZP_08113275.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533376|gb|EGB23243.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 341

 Score = 99.0 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 46/307 (14%), Positives = 98/307 (31%), Gaps = 30/307 (9%)

Query: 36  WAMSSRIRTTINGEVITDGDISKRIALLKLQKING--------------ELEKIAVQELI 81
            + ++ +  T+NG+ IT  ++ K++ +   Q                  +LEK  + +LI
Sbjct: 23  ASNNADVVATVNGKEITRAELDKQVNMTVEQYKQQGIDLTSKENKDMKAQLEKSVLDDLI 82

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
            +TL  QE E+  +T     V+          G   EDF   L +  + +   ++ +  +
Sbjct: 83  TKTLLMQEAERQKLTPSKEEVDKSIKDIKATFG-KEEDFKKALAEVKMTEQDVREDITFR 141

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
             +  +V           E EI     + K+       +         +        +  
Sbjct: 142 LTYQKLVDKVTADVKAPTEAEIAKYYNEHKDQFGTPERLEVKHILFAFDGKVPNAPKRTE 201

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES-----------DLHPQFQNLL 250
            +  + ++L L +   K   FA+   + S                           +   
Sbjct: 202 AEALQAAKLALAEITQKGRDFAAVAREKSD-DLGTRENGGSYTVDKGAGTTDPAFEKAAA 260

Query: 251 KKSQNNTTN-PYVTQKGVEYIAICDKRDLGGEI--ALKAYLSAQNTPTKIEKHEAEYVKK 307
                  T  P  +  G   I +        +    +K  ++AQ      +   +++V +
Sbjct: 261 ALKPGEITKQPVKSAYGYHLIKLEKIEPATQKSLAEVKDQIAAQLESEAKQAKFSQFVDE 320

Query: 308 LRSNAII 314
           L+  A I
Sbjct: 321 LKKKAEI 327


>gi|300997370|ref|ZP_07181710.1| PPIC-type PPIASE domain protein [Escherichia coli MS 200-1]
 gi|300304189|gb|EFJ58709.1| PPIC-type PPIASE domain protein [Escherichia coli MS 200-1]
          Length = 623

 Score = 99.0 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 36/396 (9%), Positives = 104/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   ++ ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWVEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|226227552|ref|YP_002761658.1| putative peptidyl-prolyl cis-trans isomerase [Gemmatimonas
           aurantiaca T-27]
 gi|226090743|dbj|BAH39188.1| putative peptidyl-prolyl cis-trans isomerase [Gemmatimonas
           aurantiaca T-27]
          Length = 463

 Score = 99.0 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 30/297 (10%), Positives = 84/297 (28%), Gaps = 26/297 (8%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN-------GELEKIAVQELIVETLK 86
                   I   +  +VI   ++   +   + Q           +LE+ A+Q+LI   L 
Sbjct: 42  SKTIPVDGIAAIVGDQVILVSEVMSSVNSARAQGAKIESAKDLSKLEQDALQQLIEAELL 101

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARN---TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            Q+ +   I  +   +        +       +  +F   L + G G     + + + + 
Sbjct: 102 VQKAKLEKIEVNDVELQSGVDSREKQARGNFSTDAEFRQALKENGFGTVEEWRKMQLDAA 161

Query: 144 WPDVVKNDFMLKYGNL------------EMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
               ++ + M K                  E     +           +R ++ +   ++
Sbjct: 162 RRSKLQQEVMQKLQRDGKVTAVNVTNAEIDEAYEEAKTQLPRKEARVGMRQIVVATKPSE 221

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
              +    K      +         N  ++ +        G   +     + P+F  ++ 
Sbjct: 222 DAKKKARVKIDSLRAQLDKHPEDFENIAKRESMDGTRELGGDLGWNRRGRMVPEFDRMMF 281

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
             +    +    T  G   I +   +          ++  + T   +++   + +  
Sbjct: 282 ALNPGVISPVLETGFGYHIIRVDRVQPA---EVKARHILIRPTVDSVDEGRTKLLAD 335


>gi|315180639|gb|ADT87553.1| peptidyl-prolyl cis-trans isomerase D [Vibrio furnissii NCTC 11218]
          Length = 619

 Score = 99.0 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 37/403 (9%), Positives = 103/403 (25%), Gaps = 91/403 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + +Y   + S+     + G  I  G+  +  
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYL-ISGSNNAAAKVGGTEIGRGEFEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +  +                    K  +  +I + L  Q  +  G+      +  
Sbjct: 60  QNERNRMQSQLGDYFSNLLADPEYVASFRKSVLDRMINDLLLDQHAQALGLRVSDTQIRQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
             +   +         E + S L + G   + F +Y+    +   ++             
Sbjct: 120 MILDMPQFQTDGKFDQEIYQSALRRAGFSPDSFAEYMRRDLVRNQLLSALQGSEFTLKGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                 +F       + EI    ++      R   ++     + 
Sbjct: 180 VEAQGELITQTRDIRTITLSPAEFAKSIELSDDEIEQYYKQNSERYTRPEQVKLSYIELS 239

Query: 189 DNKLQNQGFV---------------------------------QKRIKDAEESRLRLPKD 215
             +L+N   +                                 +K  +   +        
Sbjct: 240 AEQLKNAITISDEQAKQYYESHMDKYSSAEQRQVSHILIQGDDEKAAQAILDELNAGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               ++ +  I      G   ++    + P F++     K   + +    +  G   I +
Sbjct: 300 ATLAKEKSQDIGSAEEGGSLGWIEHDTMDPAFESAAFALKKAGDVSGLVKSDFGYHIIKL 359

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            D +         + A + ++    +      E   +L   A 
Sbjct: 360 DDVKAPVAKPYAEVAADIKSELKDQQAIDKFYELQTELEKVAF 402


>gi|330993926|ref|ZP_08317856.1| Chaperone surA [Gluconacetobacter sp. SXCC-1]
 gi|329758872|gb|EGG75386.1| Chaperone surA [Gluconacetobacter sp. SXCC-1]
          Length = 462

 Score = 99.0 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 86/257 (33%), Gaps = 9/257 (3%)

Query: 42  IRTTINGEVITDGDISKRIALLKLQKI-------NGELEKIAVQELIVETLKKQEIEKSG 94
           I  T+NG V+T  D+  R  L  L             L    V++LI E L+ QE+    
Sbjct: 67  IIATVNGAVLTKRDVDTRGRLFALSSGLDVSDDVMQRLRPQIVRQLIDEKLRMQEMLDRH 126

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
           I      +        +  G+      + L + G+        + +Q  W  V++ +   
Sbjct: 127 INVPIQQIADAIAGIEQRNGMPQNALRNKLAEDGVSLTTLIDQIRVQLGWTQVLRQETGE 186

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
           +      +I    + +K    +   + + +F   ++    +  + K  +   +   +   
Sbjct: 187 RGRITAADIEQRTEALKREDGKPEYMISEIFVPVEDPRHTENEL-KFTETIIQELRQGAP 245

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYIAIC 273
                 +F+     +  G   ++ E  L         K      +NP     G     I 
Sbjct: 246 FPVVAAQFSQGQSALDGGMMGWMQEDGLDPQVVDVARKMPDGAISNPIRVAGGYVIATIA 305

Query: 274 DKRDLGGEIALKAYLSA 290
           ++R +G ++A    +  
Sbjct: 306 ERRTVGHQMATILSIRQ 322


>gi|113970826|ref|YP_734619.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-4]
 gi|113885510|gb|ABI39562.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-4]
          Length = 621

 Score = 98.6 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/407 (9%), Positives = 91/407 (22%), Gaps = 95/407 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+       I       V++ F    + SY   + S      +NG+ IT  ++ +  
Sbjct: 1   MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYLG-SQSDVPAAEVNGDKITKAELEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     +++  ++ L+ + L  Q     G+      +  
Sbjct: 60  QSERARMEQQLGEMFAALSADERYLESIKQSVLERLVADKLIDQAAAAMGLRVSDEQIIA 119

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
                     +     + + + L + G     F+  + +      +              
Sbjct: 120 AIKSEPAFQTDGKFDNDRYQAILRQLGYQPQTFRSMMRVDMTRRQLTAALVGTEFVLPGE 179

Query: 152 -----------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS-- 186
                                  F+      + ++       +   +    +        
Sbjct: 180 AKQLAELQGQTRDIRYLVVDSAPFLANASVTDEQVKNYYDTNQGQFMSPEKVSLEYVELN 239

Query: 187 ---IPDNKLQNQGFVQKRIKDAEESRLRLPK----------------------------- 214
                 +        Q    + +   +   K                             
Sbjct: 240 SADFAKDSKVTDEEAQAYYDEHKTQYVSNEKRLAAHILIGPGSDEAAAKAKAEDLAKQLD 299

Query: 215 DCNKLEKFASKIH-----DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVE 268
           +     + A             GK  +     + P F   L    +   +    T  G  
Sbjct: 300 NGADFAELAKANSEDTLSAEQGGKLDWFEPGVMDPSFDTALFALKKGEHSAVVKTDFGFH 359

Query: 269 YIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            I + D +         +KA + AQ    K          KL   + 
Sbjct: 360 IIKLLDVQPGTTVPFADVKAKIVAQLQEKKAVDQFYSLQSKLADTSY 406



 Score = 40.4 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 39/131 (29%), Gaps = 4/131 (3%)

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
               +     K+ +  E +R +  +   +++  A+ +   +  K     +          
Sbjct: 487 EVKADISDRLKQDQANEAARAKAQELMTQVKAGAADVTLTAKAKLGRGAQDVDAAIVGKA 546

Query: 250 LKKSQNNTTNPYVT---QKGVEYIAICDKRDLG-GEIALKAYLSAQNTPTKIEKHEAEYV 305
            +    + T    T     G   IA+            L   L  +      E      +
Sbjct: 547 FQMPTPSATPVVDTVGLANGYAVIALDKVNAAESVSDELVNALKQRLNAQYSEADYRGLI 606

Query: 306 KKLRSNAIIHY 316
           + L++NA I Y
Sbjct: 607 ESLKANAKIDY 617


>gi|300311558|ref|YP_003775650.1| peptidyl-prolyl cis-trans isomerase [Herbaspirillum seropedicae
           SmR1]
 gi|300074343|gb|ADJ63742.1| peptidyl-prolyl cis-trans isomerase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 258

 Score = 98.6 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/300 (15%), Positives = 86/300 (28%), Gaps = 53/300 (17%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--ELEKIAV 77
            ++++F I  I ++            +NG+ I        +  +  Q      +L     
Sbjct: 8   LLVLLFAIASIPAFAQN------LAVVNGKAIPSSRAELMVKQMTAQGQPDSPQLRGAIK 61

Query: 78  QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY 137
           +ELI   +  QE +K G+   ++  N                                  
Sbjct: 62  EELINREILMQEADKQGLANSTDVKNQL-------------------------------E 90

Query: 138 LAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGF 197
           LA QSI    +  D++ K    + +I A   K K     +      +        +    
Sbjct: 91  LARQSIVIRALIADYLKKNPVSDADIKAEYDKFKAQAGDKEYHARHILVDKKEDAEAIIA 150

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNN 256
             K             K  +  ++        + G   +   +     F + +    +  
Sbjct: 151 KLKA----------GTKFEDLAKQSKDTGSAANGGDLDWATPASFVKPFSDAMVALKKGE 200

Query: 257 TTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            T  P  TQ G   I + D R           +  Q      +K    Y ++LR+ A + 
Sbjct: 201 VTPTPVQTQFGWHVIKLEDVRPAKV--PTLDEVKPQIAEALQQKKLQAYQEQLRAKAKVQ 258


>gi|167036601|ref|YP_001664179.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167039253|ref|YP_001662238.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           sp. X514]
 gi|300913893|ref|ZP_07131210.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           sp. X561]
 gi|307725422|ref|YP_003905173.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           sp. X513]
 gi|320115028|ref|YP_004185187.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166853493|gb|ABY91902.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           sp. X514]
 gi|166855435|gb|ABY93843.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|300890578|gb|EFK85723.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           sp. X561]
 gi|307582483|gb|ADN55882.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           sp. X513]
 gi|319928119|gb|ADV78804.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 301

 Score = 98.6 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/305 (10%), Positives = 89/305 (29%), Gaps = 16/305 (5%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ-KINGELEK 74
           +     L++  +  +    S +    +   +NGE IT+ +  K    +K Q + + +  K
Sbjct: 1   MKRKIALLLSFVFIVFLTVSCSAEKDVVAVVNGENITNAEYKKVFDQVKAQIESSPQYTK 60

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
               E          ++++ +                N  ++ ++      KQ   +   
Sbjct: 61  DIWDEDYQGKKFLDVVKENVLDSLIAEKLLVQEALKNNITVTDKEIEDEYQKQKEVNKDI 120

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
            +      +  + + +++       E E+    +  +           ++          
Sbjct: 121 TKEDVKNYLLINKLFDEYTKDVKVTEEELKKYYEDNEEQFETVKASHILV---------- 170

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK- 252
               +K  +D     ++        ++++         G         + P+F  ++   
Sbjct: 171 --VDEKTAEDIYNRLMKGEDFATLAKEYSVDTATKDQGGDLGEFPHGVMVPEFDQVVFSL 228

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
            +   + P  T  G   I   D   +     +K  + +     K  +   E    L   A
Sbjct: 229 KKGEISKPVKTDYGYHIIK-SDGVIIKPFDEVKDTIESYLLDDKKNQVIIEKYDALEKAA 287

Query: 313 IIHYY 317
            I  +
Sbjct: 288 KIQKF 292


>gi|330446589|ref|ZP_08310241.1| PPIC-type PPIASE domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490780|dbj|GAA04738.1| PPIC-type PPIASE domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 630

 Score = 98.6 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/406 (9%), Positives = 100/406 (24%), Gaps = 94/406 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++    +     +    +++ F    + SY +      +   +N + I+  +  +  
Sbjct: 1   MMERLREGANSIWVKIILSLIILSFVFAGVGSYLASGNEQ-VAAKVNDKEISQREFEQAY 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + Q                    +  K  +  ++ + L +Q   + G+      V  
Sbjct: 60  QNQRNQMQQRLGDYFSTLMGNPEYVQQFRKSVLDRMVNDELIEQRATELGLGVSDAQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
             ++          + E ++  L + GI    F + +    +    +             
Sbjct: 120 AIIEMPAFQVDGVFNNEQYNLTLRRAGISPEQFAESIRKDMLRQQFLSALQSSDFALNNE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS-- 186
                                 DF  K    + E  A   + KN   R   ++       
Sbjct: 180 VDELRKLESQERVVRTLKLNLADFTNKVTVTDEEAKAYYDENKNQFTRPAQVKVSYIELS 239

Query: 187 -----------------IPDNKLQNQGFVQKRIKDAE-----------------ESRLRL 212
                              +         +KR                            
Sbjct: 240 GKNLVNNIKITDQEAETYYNEHKSKYSTAEKRQVSHILVKGDSDASKAKAEALLAELKGG 299

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK--SQNNTTNPYVTQKGVEY 269
               +  +K +         GK  +  +  + P F+          + +    +  G   
Sbjct: 300 ANFADVAKKSSDDTFSAKDGGKLDWFGKGVMDPAFEEAAFSLAKPGDMSGLVKSSFGYHI 359

Query: 270 IAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           I +    +  +     +KA + A+    ++ +   +   KL   A 
Sbjct: 360 ILLDGIEEPKVKPFAEVKASIIAELQEQQVAEQFYKLQSKLAETAF 405


>gi|220904185|ref|YP_002479497.1| SurA domain-containing protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868484|gb|ACL48819.1| SurA domain protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 311

 Score = 98.6 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 93/301 (30%), Gaps = 24/301 (7%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRI--ALLKLQKINGE---------LEKIAVQEL 80
                A  +++   +NG+VIT  D+ K     + + +              + +  +  +
Sbjct: 17  CGVQAAQLNKVAAVVNGQVITMFDLQKNALPDMARARLNPDNPADAKQVDAIFRKVLDMM 76

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I++ L  QE  +  ++     ++    +  +   ++ + F   L +Q       +  +  
Sbjct: 77  IMDILIAQEARRLKVSVSPADIDNEIAKLMQGRNMTKQQFEEQLARQKSSVAELRGNIEK 136

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
             +   ++  +   K      EI A  +  K+       +   +                
Sbjct: 137 SLLRQKIMSMEVGRKVVVTPEEIRAYYEAHKDTMYDRNGLHMGVMVYSPKVNAASIAA-- 194

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTN 259
                 + R           K++   +    G    +    L+P+++    K    + T 
Sbjct: 195 ------QIRSGALTFEEAARKYSIAPNKEKGGDMGPVEWDRLNPEWEGRLTKMKPGDVTE 248

Query: 260 PYVTQKGVEYIAICDKRDLGGE----IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            +  Q     + +      G +       K  + A     K  +   +Y  +LRS A+I 
Sbjct: 249 LFDLQGHKAQVHLFRPGGGGVKMLSLEEAKPQIDAILRQPKAMERFDDYTGQLRSKAVID 308

Query: 316 Y 316
            
Sbjct: 309 I 309


>gi|294675776|ref|YP_003576391.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           capsulatus SB 1003]
 gi|294474596|gb|ADE83984.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           capsulatus SB 1003]
          Length = 289

 Score = 98.6 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/315 (9%), Positives = 81/315 (25%), Gaps = 54/315 (17%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMS----SRIRTTINGEVITDGD---ISKRIA 61
           +  F ++L +  V+ +     +    +          +  T++G  IT G    +   + 
Sbjct: 1   MPIFTRVLGSVAVMALLAGPALAEEAAKGGKTPGPETVVATVDGTEITLGMMVSVRNSLP 60

Query: 62  LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
               Q  +  L    + +LI +T   +  E                              
Sbjct: 61  AEYQQLPDQVLFNGVLDQLIQQTALAKVGE------------------------------ 90

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
                    D    +      +   ++           +++   + +  K    REY   
Sbjct: 91  ---GMMTRRDEIALEVERRAYLAGMLLDYTAERAVTPDKLKAAYDTKFAKAEPSREYHAA 147

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
            ++ +        +  +                     +  +      + G   +   + 
Sbjct: 148 HIIVASEAEAKAIKAEID-----------GGADFATVAKAKSQDGAAANGGDLGWFDLTA 196

Query: 242 LHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH 300
           + P F + +          P  T+ G   I + + R   G        + + +    ++ 
Sbjct: 197 MVPPFAEAVAAMKAGEIKGPVQTEYGWHVIKLMESR--LGAAPTLEEATEELSGDLRQQA 254

Query: 301 EAEYVKKLRSNAIIH 315
             + V    + A + 
Sbjct: 255 VQDRVTDTVAKAKVE 269


>gi|188532873|ref|YP_001906670.1| peptidyl-prolyl cis-trans isomerase SurA [Erwinia tasmaniensis
           Et1/99]
 gi|188027915|emb|CAO95772.1| Peptidyl-prolyl cis-trans isomerase, survival protein [Erwinia
           tasmaniensis Et1/99]
          Length = 431

 Score = 98.6 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/311 (10%), Positives = 109/311 (35%), Gaps = 18/311 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGEL 72
           +++   +    ++ +  +  ++   +N  V+ + D++  +  +K Q          +  L
Sbjct: 7   LILGAALTANTAFAAPQVVDKVAAVVNNGVVLESDVNSMMQSVKGQAQQAGQQLPDDKTL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ L+++ +  Q+ +++G+      ++      A+   LS +   S L   G+   
Sbjct: 67  RHQILERLVMDNILLQKAKQAGLQVSDAQLDQAIANIAQQNKLSIDQLRSRLAYDGMNYA 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            +++ +  +    +V  ++   +   L  E+ +  ++M +       +      +P ++ 
Sbjct: 127 TYREQIRQEMATSEVRNSEVRRRVSILPQEVDSLAEQMASQNSAGTELNISHILLPLSEN 186

Query: 193 QNQGFV---QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
             Q  V   +K  +                   ++    +  G   +    +L   F   
Sbjct: 187 PTQQQVDDQEKLARQLTSEARSGADFAKLAIANSADAQALKGGNMGWGRLQELPSLFAQA 246

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            +   + +   P  +  G   + + D R     +        ++  + +P   +    + 
Sbjct: 247 LVTAKKGDIIGPIRSGVGFHILKVNDMRGDNQSISVTEVHARHILLKPSPIMTDDQARQK 306

Query: 305 VKKLRSNAIIH 315
           ++++   A I 
Sbjct: 307 LQQV--AAEIK 315



 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 58/168 (34%), Gaps = 4/168 (2%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                G   +++   +   ++I+V E   R +L         +Q   QK  + A E +  
Sbjct: 259 IRSGVGFHILKVNDMRGDNQSISVTEVHARHILLKPSPIMTDDQA-RQKLQQVAAEIKSG 317

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEY 269
                +  ++ +         G   +       P F++ L +  +   ++P  +  G   
Sbjct: 318 KLTFSDAAKQLSQDPGSANQGGDLGWSSAEVFDPAFRDALLRLKKGQISDPVHSSFGWHL 377

Query: 270 IAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           I + D R +   + A K          K  +    ++++ R+ A +  
Sbjct: 378 IELMDTRKVDKTDAAKKERAYRLLFNRKFAEEAQTWMQEERAAAYVKI 425


>gi|256751661|ref|ZP_05492536.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256749470|gb|EEU62499.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 301

 Score = 98.6 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/305 (11%), Positives = 88/305 (28%), Gaps = 16/305 (5%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ-KINGELEK 74
           +     L++  +  +    S +    +   +NGE IT+ +  K    +K Q + + +  K
Sbjct: 1   MKRKIALLLSFVFIVFLTVSCSAEKDVVAVVNGENITNAEYKKVFDQVKAQIESSPQYTK 60

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
               E          ++++ +                N  ++ ++      KQ       
Sbjct: 61  DIWDEDYQGKKFLDVVKENVLDSLIAEKLLVQEALKNNITVTDKEIEDEYQKQKEVSKDI 120

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
            +      +  + + +++       E E+    +  K           ++          
Sbjct: 121 TKEDVKNYLLINKLFDEYTKDVKVTEEELKKYYEDNKEQFETVKASHILV---------- 170

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK- 252
               +K  +D     ++        ++++         G         + P+F  ++   
Sbjct: 171 --VDEKTAEDIYNRLMKGEDFATLAKEYSVDTATKDQGGDLGEFPHGVMVPEFDQVVFSL 228

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
            +   + P  T  G   I   D   +     +K  + +     K  +   E    L   A
Sbjct: 229 KKGEISKPVKTDYGYHIIK-SDGVIIKPFDEVKDTIESYLLDDKKNQVIIEKYDALEKAA 287

Query: 313 IIHYY 317
            I  +
Sbjct: 288 KIQKF 292


>gi|119383650|ref|YP_914706.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paracoccus
           denitrificans PD1222]
 gi|119373417|gb|ABL69010.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paracoccus
           denitrificans PD1222]
          Length = 423

 Score = 98.6 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 90/264 (34%), Gaps = 4/264 (1%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           +N  V+T  ++ +R+  L++ +        A Q LI + L+     + GI      ++  
Sbjct: 35  VNDSVVTRYELDQRMRFLQILRAPDGDRASAEQALIDDRLRLFAARQMGIAASDAQIDAG 94

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
             + A    +  E+F+  L + G+    F+ ++A   +W ++V+   + +    + E+  
Sbjct: 95  LAEFAGRANMDVEEFTRALAQAGVEQQTFRDFIAAGVVWRELVRQRLVPQVQVSDAELDQ 154

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
             Q++       ++  + L        + Q           +S            + ++ 
Sbjct: 155 EMQRVIETPRITHVALSELIIPAPPGQEAQAMRLAES--LVQSVRSEADFAAAARQHSAT 212

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL 284
               + G+  +    +L P  + ++        + P   +  V    + D R        
Sbjct: 213 PSAENGGRLPWAPLENLPPSLRPIILSMQNGQISQPLTVEGAVVLFYLRDSRGTLRPG-A 271

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKL 308
           K  +            EA  +  L
Sbjct: 272 KEQVLDYVRFRLASTAEANRIAAL 295



 Score = 40.0 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 24/102 (23%)

Query: 237 LLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR-------------------- 276
           L +  +       L    +N +         E + +C ++                    
Sbjct: 319 LSQGQIPTAEAIRLAVLDDNESTIVSQGGSAEILMLCKRQSALLAGNAQEAPVPVTAEGE 378

Query: 277 ----DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                    +  +  +  Q    K+ +    Y+ +LR+NAII
Sbjct: 379 EGAAPDPDALPDREQMRGQIFSRKVGQAADNYLAELRANAII 420


>gi|254517383|ref|ZP_05129440.1| chaperone SurA [gamma proteobacterium NOR5-3]
 gi|219674221|gb|EED30590.1| chaperone SurA [gamma proteobacterium NOR5-3]
          Length = 412

 Score = 98.6 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 91/276 (32%), Gaps = 15/276 (5%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             T+N                        L +  +  LI+E ++ Q   + G+      +
Sbjct: 35  LATVN---------ENIALQGGEAPPEDVLIRETLDRLILENIQIQMGARFGVRISDAQL 85

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
           +    + A   GL+ E F+  L+++G      +Q +  + I   V + +        E E
Sbjct: 86  DQAMARIAGQNGLTPEQFAMLLEQEGRSYGEIRQNIEREMIIQRVQQGNVNQLIQISEQE 145

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           I       +   + +   R +   +P     ++  V +     E    R+          
Sbjct: 146 IENYLSTEEGQKLVQPEYRIIHALLPITSDTSETEVAQSTAYCETLVERIRSGEPFDAVM 205

Query: 223 ASKIHDV--SIGKAQYLLESDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAICDKR--- 276
           AS       S G   +    DL   FQ +     +  T + + +  G+  + + D+R   
Sbjct: 206 ASVPPQYVFSGGDLGWRKLDDLPSLFQEVAPTLGRGETADLFQSPSGLHIVTMADQRGGG 265

Query: 277 DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
           D+        ++  + +    ++       +L++ A
Sbjct: 266 DMTINQTKVRHILIEPSEILTDEQARALAVELKARA 301



 Score = 95.5 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 49/141 (34%), Gaps = 3/141 (2%)

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYL 237
             +     I  +++      +    + +          +   +++  I      G   + 
Sbjct: 271 QTKVRHILIEPSEILTDEQARALAVELKARAEAGEDFGDLAREYSEDIGSAAEGGDLGWT 330

Query: 238 LESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPT 295
               + P+F+N +     N  + P  +Q G   + + D+R+      + KA +       
Sbjct: 331 SPGQMVPEFENTMASTEINTISAPVRSQFGWHILEVLDRREKDVTEDMRKAQVREFLHGR 390

Query: 296 KIEKHEAEYVKKLRSNAIIHY 316
           K ++    +++K+R  A +  
Sbjct: 391 KYQEELDAWLRKIRDEAFVDI 411


>gi|300930256|ref|ZP_07145669.1| PPIC-type PPIASE domain protein [Escherichia coli MS 187-1]
 gi|300461828|gb|EFK25321.1| PPIC-type PPIASE domain protein [Escherichia coli MS 187-1]
          Length = 623

 Score = 98.6 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 104/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|320539610|ref|ZP_08039274.1| putative peptidyl-prolyl cis-trans isomerase (PPIase) [Serratia
           symbiotica str. Tucson]
 gi|320030222|gb|EFW12237.1| putative peptidyl-prolyl cis-trans isomerase (PPIase) [Serratia
           symbiotica str. Tucson]
          Length = 435

 Score = 98.6 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/321 (11%), Positives = 109/321 (33%), Gaps = 18/321 (5%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           + + +K   T  + ++ C     ++ +     ++   +N  V+ + DI+  +  +KL   
Sbjct: 1   MGNVMKNWRTLILGLVVCANA--AFAAPQEVDKVAAVVNNGVVLESDINGLLQSVKLHAQ 58

Query: 69  NGE--------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
                      L    ++ LI++ ++ Q  +K GIT  +  ++      A    +S    
Sbjct: 59  QDGQPLPDDNLLRHQIIERLIMDNIQLQMAQKMGITVSNADLDNSIANIAAQNKMSLNQL 118

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
            + L  +G+  N ++  +  + +  +V  N    +   L  E+ A  +++    V +  +
Sbjct: 119 RNRLSYEGLNYNTYRLQIRKEMLIAEVRNNAVRRRVTILPQEVEALAKQVGAQNVSDTEM 178

Query: 181 RTVLFSIPDNKLQNQGF---VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
                 +P  +  +Q      +   +                  +++    +  G   + 
Sbjct: 179 NISHILLPLPENPSQQQMDSAEALARKLMGELHNGADFGKLAITYSADPQALKGGNMGWG 238

Query: 238 LESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQN 292
              ++   F ++L+   +     P  +  G   + + D R     +        ++  + 
Sbjct: 239 KLQEIPTLFAEHLVNAKKGIIVGPIRSGVGFHILKVNDIRGASQSVSVTEVHARHILLKP 298

Query: 293 TPTKIEKHEAEYVKKLRSNAI 313
           +    +      +  +  +  
Sbjct: 299 SVVMTDDQARTKLASIAQDIK 319



 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 83/280 (29%), Gaps = 20/280 (7%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   ++      +  Q ++     I+   L        E         +  +    +   
Sbjct: 156 ILPQEVEALAKQVGAQNVSDTEMNISHILL-----PLPENPSQQQMDSAEALARKLMGEL 210

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ----SIWPDVVKND-------FMLKYGNL 159
            N     +   ++             +  +Q         +V               G  
Sbjct: 211 HNGADFGKLAITYSADPQALKGGNMGWGKLQEIPTLFAEHLVNAKKGIIVGPIRSGVGFH 270

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
            +++   +   ++++V E   R +L         +Q    K    A++ +    K  ++ 
Sbjct: 271 ILKVNDIRGASQSVSVTEVHARHILLKPSVVMTDDQART-KLASIAQDIKSGRTKFADEA 329

Query: 220 EKFASKI-HDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRD 277
           +  +      +  G   +       P F++ L K ++   + P  +  G   I + D R 
Sbjct: 330 KHLSQDPGSALQGGDLGWASPDIYDPAFRDALLKLNKGEISAPVHSAFGWHLIQLLDTRQ 389

Query: 278 L-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +   + A K          K  +    ++++LR+ A +  
Sbjct: 390 VDKTDAAQKNRAYRMLFNRKFAEEAQTWMQELRAQAYVKI 429


>gi|260576764|ref|ZP_05844749.1| SurA domain protein [Rhodobacter sp. SW2]
 gi|259021016|gb|EEW24327.1| SurA  domain protein [Rhodobacter sp. SW2]
          Length = 402

 Score = 98.6 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 99/273 (36%), Gaps = 6/273 (2%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIR--TTINGEVITDGDISKRIALLKLQKINGEL 72
           ++    V+ +F +    +  + A          +N  VI+  ++ +RI+ + +  +   +
Sbjct: 1   MMRIKTVIFVFLLGLTGAIPAAAQDGPFAPRVYVNDRVISQYELDQRISFMTVLGLRENV 60

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           E++A+  LI E L+    ++  +      V     + A    LS E+F + L   G+   
Sbjct: 61  EEVALNALIDERLQMTVAKQYNVKLTPKQVEAGMAEFAGRAQLSTEEFLTALAPAGVEAQ 120

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            F+ ++    IW ++V+  F  +    E EI     ++   T  + L   ++   P+ +L
Sbjct: 121 GFRDFVTAGLIWREIVRAKFGPRASISEAEIDQAIAQIDKNTSVQILASEIVIPAPEGQL 180

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
                  +R    +              + +S       G+  +    +L P    +L  
Sbjct: 181 PVALATARR---LKAQSRTPEDFAKAARENSSSSSAGRGGRLNWTPVGNLPPDVVPVLLA 237

Query: 253 -SQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL 284
                 + P   +  V    + + +    +  +
Sbjct: 238 LKPGQVSAPVKLEGSVALFLLHEIKAQEQDGPV 270



 Score = 42.0 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 27/62 (43%)

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
               ++   V      ++ +C++  +      +  + AQ    ++  + A Y+  LR+NA
Sbjct: 338 DPGESSTALVRGGNRVFLMLCNRIPVLDVPPSREAVRAQLLNQRLAAYGAGYLADLRANA 397

Query: 313 II 314
           II
Sbjct: 398 II 399


>gi|78061944|ref|YP_371852.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           383]
 gi|77969829|gb|ABB11208.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           383]
          Length = 296

 Score = 98.6 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 92/305 (30%), Gaps = 28/305 (9%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-ELE 73
           +     + I+   + + +  +      +        +T  DI+  +  +  +       +
Sbjct: 2   MTKMKMLAIVAGSLALGTPFAAHAQDDVIANAAQASVTQDDIAGLLKAVSPEGRERLAAD 61

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
             A+ +++  TL                     +  A++ G   +       +Q   D  
Sbjct: 62  PAALDQVVRSTL----------------AQKAVLAEAKSKGWDKQAQVQAAVEQARRDIV 105

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
            + YLA        V         + E++   +K +      R   +  +  ++P N   
Sbjct: 106 VRSYLAS-------VNAPPADYPSDTELQSAYDKNRAAFTAPRALHVAQIYIAVPPNADA 158

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK 252
                 ++      SR R        +  +       + G   ++ +  + P  +     
Sbjct: 159 ATLDKARKQAADLASRARSGDFAALAKANSQDKASAANGGDLGFVPDQLMVPAVRQAADA 218

Query: 253 -SQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLR 309
                 + P  T  G   + + D R         +K  L A     + +++   Y+ KL 
Sbjct: 219 LKPGQVSAPIQTPAGFHVVKLIDVRAAAPRPLADVKEQLRAMLRAQRTQQNAQAYLAKLA 278

Query: 310 SNAII 314
           +NA I
Sbjct: 279 ANAPI 283


>gi|268316845|ref|YP_003290564.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
           DSM 4252]
 gi|262334379|gb|ACY48176.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
           DSM 4252]
          Length = 458

 Score = 98.6 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/286 (10%), Positives = 81/286 (28%), Gaps = 17/286 (5%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKI---NGELEKIAVQELIVETLK-KQEIEKSGI 95
             I   +  E+I   ++   +A    Q+    + EL   A+ +LI + +  +     + I
Sbjct: 28  DEIVAVVGNELILRSEVDAFLAGYLQQQRIPYSDELWLEALNQLIDQKVLAEHARRDTTI 87

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------ 149
               + V     +            +   +  G      K  L        + +      
Sbjct: 88  QISDDRVEQALQERLNQLMQQVGGQTRLEEIYGKTLTQLKAELREDFREQMLAETFRNRK 147

Query: 150 -NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
                +    +                    +  ++     ++   Q   +      +  
Sbjct: 148 LQQIRITPSEVRAWFEQFPTDSLPTLPDLVRLSHIVRYPRPSEKARQEAFEIASAIRDSI 207

Query: 209 RLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKG 266
                   +   +F+       + G       +DL P+F     +      + P+ T  G
Sbjct: 208 VSGRSSFEDMARRFSEDPGSAAAGGHIPDTRLADLVPEFAAVAARIPIGEISQPFETPFG 267

Query: 267 VEYIAICDKRDLGGEIALKAYLSAQNTPTKIE-KHEAEYVKKLRSN 311
           V  + +  +    G++    ++  +   ++ +      Y++ +R +
Sbjct: 268 VHILRVNRR---QGDLIDFNHILIRIDESQADPSEAIAYLEAVRDS 310


>gi|168187039|ref|ZP_02621674.1| foldase protein PrsA [Clostridium botulinum C str. Eklund]
 gi|169295091|gb|EDS77224.1| foldase protein PrsA [Clostridium botulinum C str. Eklund]
          Length = 348

 Score = 98.6 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/343 (11%), Positives = 104/343 (30%), Gaps = 31/343 (9%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI--------- 56
             ++   +  +      +      ++     A++  +   +  + IT G++         
Sbjct: 1   MKNIRKLVAAVAMCVFSVSAVGCSMIEKTPEAINKTVVAKVGDKKITKGELDSNFGVKRY 60

Query: 57  ---------SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF-- 105
                           ++++   +++   VQ++  +   KQE EK  +    + +     
Sbjct: 61  AEQFKAQYGDNYAENPQVKEQLKQVKLAVVQQMAAQEALKQEAEKLKLVPKEDELKKEAD 120

Query: 106 --FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
               +  +   +  +     + K         + L   ++  + ++N+        E E+
Sbjct: 121 KKIQEIKKEQNIKTDQDFDKMVKASGFTKEGFENLVKDNVILEKLQNELTKNVKVDEKEM 180

Query: 164 PANKQKMKNITVREYLI----RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
               +  K+   ++             +     ++   V+  IK  +E   +        
Sbjct: 181 QKYYETHKDKYPKDPKNPTKVHLAHIILQPKSQEDVSKVESEIKSIKEELNKGADFSILA 240

Query: 220 EKFASKIHDVSIGKAQYLL---ESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK- 275
           +K++        G    +             + L       ++P  TQ G   I +  K 
Sbjct: 241 KKYSQDGSKDKGGDLGTVPVVNSGFDEQFMDSALPLKDGQISDPVKTQFGYHIIKMIKKD 300

Query: 276 -RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            +       +K  ++      K +K      K+++ NA I  Y
Sbjct: 301 VKPCKTFAEVKNEINKFLLQDKKDKAIKNKFKQIQDNAKIKVY 343


>gi|194437396|ref|ZP_03069493.1| peptidylprolyl isomerase [Escherichia coli 101-1]
 gi|253774568|ref|YP_003037399.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160511|ref|YP_003043619.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           B str. REL606]
 gi|194423565|gb|EDX39555.1| peptidylprolyl isomerase [Escherichia coli 101-1]
 gi|242376223|emb|CAQ30914.1| periplasmic folding helper protein [Escherichia coli BL21(DE3)]
 gi|253325612|gb|ACT30214.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972412|gb|ACT38083.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           B str. REL606]
 gi|253976622|gb|ACT42292.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           BL21(DE3)]
 gi|323972295|gb|EGB67505.1| ppic-type ppiase domain-containing protein [Escherichia coli TA007]
          Length = 623

 Score = 98.6 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 104/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|260768943|ref|ZP_05877877.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio furnissii CIP
           102972]
 gi|260616973|gb|EEX42158.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio furnissii CIP
           102972]
          Length = 619

 Score = 98.6 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/403 (9%), Positives = 103/403 (25%), Gaps = 91/403 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + +Y   + S+     + G  I  G+  +  
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYL-ISGSNNAAAKVGGTEIGRGEFEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +  +                    K  +  +I + L  Q  +  G+      +  
Sbjct: 60  QNERNRMQSQLGDYFSNLLADPEYVASFRKSVLDRMINDLLLDQHAQALGLRVSDTQIRQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
             +   +         E + S L + G   + F +Y+    +   ++             
Sbjct: 120 MILDMPQFQTDGKFDQEIYQSALRRAGFSPDSFAEYMRRDLVRNQLLSALQGSEFTLKGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                 +F       + EI    ++      R   ++     + 
Sbjct: 180 VEAQGELITQTRDIRTITLSPAEFAKSIELSDDEIEQYYKQNSERYTRPEQVKLSYIELS 239

Query: 189 DNKLQNQGFV---------------------------------QKRIKDAEESRLRLPKD 215
             +L+N   +                                 +K  +   +        
Sbjct: 240 AEQLKNAITISDEQAKQYYESHMDKYSSAEQRQVSHILIQGDDEKAAQAILDELNAGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               ++ +  I      G   ++    + P F++     K   + +    +  G   I +
Sbjct: 300 ATLAKEKSQDIGSAEEGGSLGWIEHDTMDPAFESAAFALKKAGDVSGLVKSDFGYHIIKL 359

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            D +         + A + ++    +      E   +L   A 
Sbjct: 360 DDVKAPVAKPYAEVAADIKSELKDQQAIDKFYELQTELEKVAF 402


>gi|182420001|ref|ZP_02951235.1| foldase protein PrsA [Clostridium butyricum 5521]
 gi|237669545|ref|ZP_04529525.1| prsA family protein [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376038|gb|EDT73625.1| foldase protein PrsA [Clostridium butyricum 5521]
 gi|237654989|gb|EEP52549.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 343

 Score = 98.6 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/340 (10%), Positives = 97/340 (28%), Gaps = 29/340 (8%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
              +   I  ++ + + I      ++     A+   +  T+  E IT  D+ + +     
Sbjct: 1   MKRIKKLIAAVSIFTLSISVMGCKMIEKTPEAIQKTVYATVGDEKITKADMDEEMKATID 60

Query: 66  QKINGELEKIAVQELIVETLKKQEIEKSGITFDS-------------------NTVNYFF 106
           Q      +  A  E I + LK+ +++      +                    N      
Sbjct: 61  QLKQQYGDDYANNEKIKDQLKQMKVQYLNAMVNEKLMLKNAESVGVTPTDDELNEYADKQ 120

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
           ++  +            L+  G  ++ +K Y   Q      V+          + +  A 
Sbjct: 121 IEQLKQAYPDDAQLQQVLEANGFTEDSYKDYAKKQYKLQK-VQEAITADVEVTDDDAKAY 179

Query: 167 KQKMKNITVRE----YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
             + K+              ++     +   +      +  + +              ++
Sbjct: 180 YDENKDSQYTVGAGANAAHILIAEKGSDGNIDFDASLAKANEVKAKLDAGADFAQLASEY 239

Query: 223 ASKIHDVSIGKAQYLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD-- 277
            +       G   ++  +  +          + S+   ++P  +Q G   I     +D  
Sbjct: 240 GTDGTKDKGGDLGFVAYNQANYDQDFLAGFKQLSEGQISDPIKSQFGYHIIKATGIKDEV 299

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           +     +K  + +Q    +  K   + + + +  A +  Y
Sbjct: 300 VTPFDDVKEQIKSQLLQQQQSKAFNDKISEWKDAAKVKTY 339


>gi|332094597|gb|EGI99643.1| PPIC-type PPIASE domain protein [Shigella boydii 5216-82]
          Length = 623

 Score = 98.6 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 104/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TGELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|146310569|ref|YP_001175643.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Enterobacter sp.
           638]
 gi|145317445|gb|ABP59592.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterobacter sp.
           638]
          Length = 624

 Score = 98.6 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/396 (10%), Positives = 106/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     S+     +NG+ I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIILSFILTGVSGYLIGGSSNY-AAEVNGQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           A  + +                     L +  V  LI E L  Q  ++ G+    + V  
Sbjct: 60  AGERNRMQQQLGDQFSELAANEGYMKTLRQQTVNRLIDEALLDQYAKRLGLGISDDQVKK 119

Query: 105 FFVQHAR---NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF--------- 152
                     N       +++ +++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFSTQAFQTNGKFDNTRYNAIVNQMGMTADQYAQALRNQLTSQQLINAVVGTDFMLKGE 179

Query: 153 ------------------------MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                     K    + E+ A  ++ KN        R     + 
Sbjct: 180 TDELAALVSQQRVVRAATIDVNALAAKQQASDEEVKAYYEQNKNNFTAPEQFRVSYIKLD 239

Query: 189 DNKLQNQG-----------------------------FVQKRIKDAEESRLRLPKDCNKL 219
              +                                   +   K   +   +        
Sbjct: 240 AATMPETASDSDIQSYYDQHQDQFTQAQRNRYSVIQTKTEADAKAVVDELAKGADFATVA 299

Query: 220 EKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           +  ++ I    + G   +L ++    + +N   K +   +    +  G   + + D +  
Sbjct: 300 KAKSTDIISAKNGGDMGWLEDATTPEELKNAGLKEKGQLSGVIKSSVGFLVVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KTKPLAEVRDDIAAKVKQEKALDAYYALQQKVSDAA 395


>gi|114327287|ref|YP_744444.1| peptidyl-prolyl cis-trans isomerase [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315461|gb|ABI61521.1| peptidyl-prolyl cis-trans isomerase [Granulibacter bethesdensis
           CGDNIH1]
          Length = 346

 Score = 98.6 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 75/283 (26%), Gaps = 48/283 (16%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQK---INGELEKIAVQELIVETLKKQEIEKSGIT 96
           S +   +NG  I  GD+      L  Q        +  I + +++      Q   K G+ 
Sbjct: 86  STVVGRVNGADIHLGDLEDAARNLPEQMRQAPPQVIYPILLNQMLQREALVQAARKEGLD 145

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
              +                                   +  A Q++  D ++       
Sbjct: 146 KKPDVAAD------------------------------MKRAANQTLQNDYIREHVGPLL 175

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
            +  +    +K+        E   R +L    D   +    ++                 
Sbjct: 176 TDEALRKKFDKELAGKPGEEEVHARHILVPTEDEAKRIIAELKA-----------GGDFA 224

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICD 274
              ++ +      + G   +  ++D+ P+F +       N  +  P  TQ G   I   +
Sbjct: 225 KIAKERSKDPGAANGGDLGFFKQADMVPEFSKAAFALKNNEVSPTPVHTQFGWHVIQTLE 284

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            R    +         Q     I+    + V      A +  +
Sbjct: 285 HRRAPAQT--FEQARDQLRQQVIQDGVKDLVTNAMKGAKVERF 325


>gi|187734800|ref|YP_001876912.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187424852|gb|ACD04131.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 384

 Score = 98.6 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 96/301 (31%), Gaps = 23/301 (7%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQ-------------KINGELEKIAVQELIVETLK 86
           +RI  T+NG  IT  ++S R+  +  Q             K     +K  +++L+   L 
Sbjct: 83  NRIAATVNGRPITANEVSVRLMPIGAQLAAQYPKQGPEFYKQLALAKKNIIEDLVERELL 142

Query: 87  KQEIEKSGITFDSNTVNYFFVQHA-RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
           + E E  G     + ++    +            F   L   G+    F++    Q    
Sbjct: 143 RNEFEGMGGVIRDSLIDQEVNRTILTTFNGDRSAFLKNLSLSGMTIRAFREMTKKQLQVQ 202

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQ 199
            +  + +  +      EI    +  K           ++    +     D+    +  + 
Sbjct: 203 IMRASKYDQEIPPTPEEIQQEYESTKEQYRDLTKDKIKFKKIFIPMLGDDSASTPEVQLN 262

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ-FQNLLKKSQNNTT 258
                A+E + +        ++++  ++    G       S L P+    +         
Sbjct: 263 LAELIAKEIKSKNATFEEMAKRYSKDLYAEKGGDWPVTERSTLSPESAAIIFGAQPGEII 322

Query: 259 NPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            P V   G   + +  K         A+K  +       +  +   ++V++LR  AI+  
Sbjct: 323 GPLVDSTGFTIVLVEKKELAPPPPLSAIKEQIDIMARNKRSNERYKKWVERLRKKAIVKI 382

Query: 317 Y 317
           Y
Sbjct: 383 Y 383


>gi|223039645|ref|ZP_03609931.1| foldase protein PrsA [Campylobacter rectus RM3267]
 gi|222879028|gb|EEF14123.1| foldase protein PrsA [Campylobacter rectus RM3267]
          Length = 270

 Score = 98.2 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 88/299 (29%), Gaps = 40/299 (13%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK---LQKINGELEKIAVQELI 81
           F    +    + ++++ +  T+NG  ITD DI+  +A +    L+++  + +K  + E I
Sbjct: 4   FLFATLSLAAAMSLNAAVHATVNGSDITDKDIAFTLAAMPGVTLEQLPKDTQKKVIDETI 63

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
              L   E +KSG+                                              
Sbjct: 64  SRKLLLDEAKKSGLEKTDEYKAAL-------------------------------EEVKD 92

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
           +I  D+            E EI     K K        ++     +   K  N      +
Sbjct: 93  NIALDLWMKRIFDNVKVSENEISDFYNKNKAEFAVPAQVKAKHILVAAEKDANDVIAALK 152

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT-N 259
               +    +  +      K   +    + G+  +  +S +   F +      +   T  
Sbjct: 153 GLKGDALVKKFEELAK--AKSTDQGSAENGGELGWFGQSQMVKPFADAAFALKKGEITAK 210

Query: 260 PYVTQKGVEYIAICDKRDLGG--EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           P  +  G   I   D +  G      +K  +       K      +   +LR+ A + Y
Sbjct: 211 PVKSNFGYHVILKEDSKAAGTVGLNEVKPQIEGNLKMEKFRNDIRKRGDELRAKAKVEY 269


>gi|209517935|ref|ZP_03266768.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           H160]
 gi|209501651|gb|EEA01674.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           H160]
          Length = 265

 Score = 98.2 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 76/296 (25%), Gaps = 36/296 (12%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ--KINGELEKIAVQELI 81
               +      + + + +   T+NG+ ++  D    I     Q    + +L      ELI
Sbjct: 2   FALALGTALSLASSATEKPFVTVNGKPVSQADADLYIGQAHAQGFSDSPQLTNHVRDELI 61

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
              +  Q+ EK G   +            +    +   +                     
Sbjct: 62  RREVLFQQAEKVGFDRNPEVAARAEAARQKILVQAQATWEIE------------------ 103

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
            I    +++       + +       +        EY +R +L                 
Sbjct: 104 -IVRAYMQDFLKKNPVSDDQLKAMYNEMKSKGGSTEYKVRHILVKDEGEAK--------- 153

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTN- 259
             D      +     +  ++        + G   +   S +   F + +        T  
Sbjct: 154 --DIIARLNKGASFGDLAKESIDSDSRYNGGDLGWKTSSKVVKPFADAVSHLHKGEYTQT 211

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           P  T  G   I + D R L         +         E+     VK LR+ A I 
Sbjct: 212 PVKTGYGFHVIEVDDTRALQV--PSFEEMKPMLYQQAQEELVDRMVKNLRAKATIQ 265


>gi|300903291|ref|ZP_07121219.1| PPIC-type PPIASE domain protein [Escherichia coli MS 84-1]
 gi|301301592|ref|ZP_07207727.1| PPIC-type PPIASE domain protein [Escherichia coli MS 124-1]
 gi|300404586|gb|EFJ88124.1| PPIC-type PPIASE domain protein [Escherichia coli MS 84-1]
 gi|300843089|gb|EFK70849.1| PPIC-type PPIASE domain protein [Escherichia coli MS 124-1]
 gi|315256269|gb|EFU36237.1| PPIC-type PPIASE domain protein [Escherichia coli MS 85-1]
          Length = 623

 Score = 98.2 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 104/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|260428595|ref|ZP_05782574.1| ppic-type ppiase domain protein [Citreicella sp. SE45]
 gi|260423087|gb|EEX16338.1| ppic-type ppiase domain protein [Citreicella sp. SE45]
          Length = 410

 Score = 98.2 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 95/248 (38%), Gaps = 5/248 (2%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              ++  VIT  ++ +R  +L L    G    +A ++L+ + L+ Q  + +GI      +
Sbjct: 36  AIIVDEMVITGYELDQRARMLTLLNAPGNTNDLAREQLVDDRLRLQAAQNAGIEPTEEEI 95

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                + A    LS E+F + L + G+ +  F+ ++   + W  +V++ F+ +      E
Sbjct: 96  LDGMSEFAGRAQLSREEFVTALGRAGVAEQTFRDFVRAGAAWRSLVQSRFVQQSQVSPAE 155

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +          +    L+  ++  +    ++      +R            +   +  ++
Sbjct: 156 VDRALAGNGGSSTVRVLLSEIIMPLSPQNVEEVRARAER----IAQMTSESEFSAQARQY 211

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           ++     + G+  +   ++L PQ + ++   S    T P   Q  V    + D  + G  
Sbjct: 212 SATATRDAGGRLPWRELNELPPQLRPMILGLSPGQVTQPIPIQGAVALFQLRDIEETGYT 271

Query: 282 IALKAYLS 289
               A + 
Sbjct: 272 APEIAAVE 279



 Score = 46.2 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 3/81 (3%)

Query: 237 LLESDLHPQFQNL-LKKSQNNTTNPYVTQKG--VEYIAICDKRDLGGEIALKAYLSAQNT 293
           L  S L         K  +   +       G  + ++ +C +     E A +  +     
Sbjct: 327 LPPSQLPTDIAYELSKLDEGEVSTALTRSNGQSLMFLMLCGRTAAVSEDADRQQVEMGLR 386

Query: 294 PTKIEKHEAEYVKKLRSNAII 314
             +I      Y+ +LR+NA I
Sbjct: 387 NQRISAMADGYLAQLRANARI 407


>gi|302039583|ref|YP_003799905.1| putative peptidylprolyl isomerase, PpiC-type [Candidatus Nitrospira
           defluvii]
 gi|300607647|emb|CBK43980.1| putative Peptidylprolyl isomerase, PpiC-type [Candidatus Nitrospira
           defluvii]
          Length = 304

 Score = 98.2 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 88/314 (28%), Gaps = 48/314 (15%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKR----IALLK 64
           +S +   LT+   L    +  +           +   ING  IT  +   R        +
Sbjct: 15  ISSWQTRLTSA-ALGFCALGSLAGCTEPPQEEPVIAMINGRSITQSEFDIRWEDLSQATR 73

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
            +      ++  + ELI+  L  QE  K G+                             
Sbjct: 74  ARYEKEGGKRRFLDELIMRELLMQEARKQGLDQSDEIREKTL------------------ 115

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
                           Q I  +++K+    K    + E+ A   K  N  +    ++  +
Sbjct: 116 ------------RYREQLILDELLKDRIKTKVEVSKEELDAYLGKHANQLLANPKVQVSI 163

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLH 243
             +P+         Q                     +++         G      +  L 
Sbjct: 164 MLLPNVYAAKDLKRQ---------VEAGGNFTRFALRYSIDERSRAKGGDLGPYKKGLLE 214

Query: 244 PQFQNLLKK-SQNNTTNPYVTQKGVEYIAI--CDKRDLGGEIALKAYLSAQNTPTKIEKH 300
           P+   L+        ++P  T +G   + +   +   L  + A +  L  +    K  K 
Sbjct: 215 PEVDALIPSLHPGVISDPIKTAQGYYLVKVSPLEPEILQADQATRERLRQELLAEKRRKR 274

Query: 301 EAEYVKKLRSNAII 314
             +   +LR+ A I
Sbjct: 275 LDDVFAELRTGATI 288


>gi|187732708|ref|YP_001879152.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella boydii
           CDC 3083-94]
 gi|187429700|gb|ACD08974.1| peptidylprolyl isomerase [Shigella boydii CDC 3083-94]
          Length = 623

 Score = 98.2 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 103/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D    
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIHPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|283834240|ref|ZP_06353981.1| peptidylprolyl cis-trans isomerase D [Citrobacter youngae ATCC
           29220]
 gi|291069758|gb|EFE07867.1| peptidylprolyl cis-trans isomerase D [Citrobacter youngae ATCC
           29220]
          Length = 624

 Score = 98.2 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/396 (9%), Positives = 101/396 (25%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y      +     +NG+ I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGKNY-AAKVNGQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +    + V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYSRELKLNISDDQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                             +++ +++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFTTPSFQVDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINSVAGTDFMLKGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                N    K    + E+ +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRIVREATIDVNALAAKQSVTDQEVTSYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AAAMQETASDADIQSYYDQHQDQFTQPQRNRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I     G   +L ES    + +N   K +   +    +  G     + D +  
Sbjct: 300 KEKSADIISARKGGDMGWLEESTTPDELKNAGLKEKGQLSGVIKSSVGFLVARLDDVQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +     +  ++A+    K         +K+   A
Sbjct: 360 QVKPLSEARDDIAAKVKQEKALDAYYALQQKVSDAA 395


>gi|144900459|emb|CAM77323.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 273

 Score = 98.2 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 72/281 (25%), Gaps = 50/281 (17%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS 99
           + +   +NG  I   D++     L  Q       +     ++   L  ++ +K G+  D 
Sbjct: 30  NPVVAEVNGTKILQSDLANYQRSLPPQLAAQAPFEALQDMVVNNMLVAEQAKKEGLDKDP 89

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
                                                 L  Q +    +      +    
Sbjct: 90  EVK----------------------------------QLYQQVLVKMWMNKHLKAEITPA 115

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
            ++   +          E   R +L    D        ++K                   
Sbjct: 116 AVKAAYDGYLASAKPEEEVRARHILTETEDQAKAVIAELKK-----------GADFTETA 164

Query: 220 EKFASKIHD-VSIGKAQYLLESDLHPQFQN-LLKKSQNNTTN-PYVTQKGVEYIAICDKR 276
           +  +       + G   Y  + ++ PQF +        + +  P  +Q G   I + D+R
Sbjct: 165 KAKSKDPSAKQNGGDLGYFAQGEMVPQFSSAAFAMKVGDLSEAPVQSQFGWHVIKVEDRR 224

Query: 277 DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
                       +        EK   + V  +RS A +  Y
Sbjct: 225 QATP--PTLEQATPAIREELAEKLAQKLVGDVRSKAKVTLY 263


>gi|16128426|ref|NP_414975.1| periplasmic folding chaperone, has an inactive PPIase domain
           [Escherichia coli str. K-12 substr. MG1655]
 gi|26246452|ref|NP_752491.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           CFT073]
 gi|74311016|ref|YP_309435.1| peptidyl-prolyl cis-trans isomerase [Shigella sonnei Ss046]
 gi|82542929|ref|YP_406876.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella boydii
           Sb227]
 gi|89107311|ref|AP_001091.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli str. K-12
           substr. W3110]
 gi|91209515|ref|YP_539501.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli UTI89]
 gi|110640702|ref|YP_668430.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           536]
 gi|117622701|ref|YP_851614.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           APEC O1]
 gi|170021186|ref|YP_001726140.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           ATCC 8739]
 gi|170080027|ref|YP_001729347.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188496348|ref|ZP_03003618.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli 53638]
 gi|191173673|ref|ZP_03035197.1| peptidylprolyl isomerase [Escherichia coli F11]
 gi|193067528|ref|ZP_03048495.1| peptidylprolyl isomerase [Escherichia coli E110019]
 gi|218557351|ref|YP_002390264.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           S88]
 gi|218688305|ref|YP_002396517.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli ED1a]
 gi|218703725|ref|YP_002411244.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli UMN026]
 gi|227884548|ref|ZP_04002353.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           83972]
 gi|237707564|ref|ZP_04538045.1| peptidyl-prolyl cis-trans isomerase [Escherichia sp. 3_2_53FAA]
 gi|238899729|ref|YP_002925525.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           BW2952]
 gi|256023940|ref|ZP_05437805.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia sp.
           4_1_40B]
 gi|293403562|ref|ZP_06647653.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli FVEC1412]
 gi|293408591|ref|ZP_06652430.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298379174|ref|ZP_06989055.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli FVEC1302]
 gi|300900512|ref|ZP_07118679.1| PPIC-type PPIASE domain protein [Escherichia coli MS 198-1]
 gi|300918176|ref|ZP_07134783.1| PPIC-type PPIASE domain protein [Escherichia coli MS 115-1]
 gi|300947906|ref|ZP_07162054.1| PPIC-type PPIASE domain protein [Escherichia coli MS 116-1]
 gi|300958009|ref|ZP_07170173.1| PPIC-type PPIASE domain protein [Escherichia coli MS 175-1]
 gi|300988004|ref|ZP_07178484.1| PPIC-type PPIASE domain protein [Escherichia coli MS 45-1]
 gi|301025663|ref|ZP_07189181.1| PPIC-type PPIASE domain protein [Escherichia coli MS 196-1]
 gi|301330692|ref|ZP_07223294.1| PPIC-type PPIASE domain protein [Escherichia coli MS 78-1]
 gi|301647367|ref|ZP_07247179.1| PPIC-type PPIASE domain protein [Escherichia coli MS 146-1]
 gi|306813091|ref|ZP_07447284.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           NC101]
 gi|307137086|ref|ZP_07496442.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           H736]
 gi|307312181|ref|ZP_07591817.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli W]
 gi|309794826|ref|ZP_07689247.1| PPIC-type PPIASE domain protein [Escherichia coli MS 145-7]
 gi|312964534|ref|ZP_07778790.1| PPIC-type PPIASE domain protein [Escherichia coli 2362-75]
 gi|331640961|ref|ZP_08342096.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli H736]
 gi|331651379|ref|ZP_08352404.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli M718]
 gi|331656498|ref|ZP_08357460.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli TA206]
 gi|331661822|ref|ZP_08362745.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli TA143]
 gi|331681836|ref|ZP_08382469.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli H299]
 gi|83288412|sp|P0ADY2|PPID_ECOL6 RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase
           D; AltName: Full=Rotamase D
 gi|83288413|sp|P0ADY1|PPID_ECOLI RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase
           D; AltName: Full=Rotamase D
 gi|26106850|gb|AAN79035.1|AE016756_218 Peptidyl-prolyl cis-trans isomerase D [Escherichia coli CFT073]
 gi|1580712|dbj|BAA11645.1| YbaU [Escherichia coli W3110]
 gi|1773125|gb|AAB40197.1| similar to H. influenzae HI1004 [Escherichia coli]
 gi|1786645|gb|AAC73544.1| periplasmic folding chaperone, has an inactive PPIase domain
           [Escherichia coli str. K-12 substr. MG1655]
 gi|73854493|gb|AAZ87200.1| putative protease maturation protein [Shigella sonnei Ss046]
 gi|76365131|gb|ABA42059.1| peptidyl-prolyl isomerase [Escherichia coli]
 gi|81244340|gb|ABB65048.1| putative protease maturation protein [Shigella boydii Sb227]
 gi|85674581|dbj|BAE76221.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli str. K12
           substr. W3110]
 gi|91071089|gb|ABE05970.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli UTI89]
 gi|110342294|gb|ABG68531.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli 536]
 gi|115511825|gb|ABI99899.1| peptidyl-prolyl isomerase [Escherichia coli APEC O1]
 gi|169756114|gb|ACA78813.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli
           ATCC 8739]
 gi|169887862|gb|ACB01569.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188491547|gb|EDU66650.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli 53638]
 gi|190906031|gb|EDV65646.1| peptidylprolyl isomerase [Escherichia coli F11]
 gi|192958940|gb|EDV89376.1| peptidylprolyl isomerase [Escherichia coli E110019]
 gi|218364120|emb|CAR01785.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           S88]
 gi|218425869|emb|CAR06675.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           ED1a]
 gi|218430822|emb|CAR11696.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           UMN026]
 gi|222032236|emb|CAP74975.1| Peptidyl-prolyl cis-trans isomerase D [Escherichia coli LF82]
 gi|226898774|gb|EEH85033.1| peptidyl-prolyl cis-trans isomerase [Escherichia sp. 3_2_53FAA]
 gi|227838634|gb|EEJ49100.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           83972]
 gi|238861991|gb|ACR63989.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           BW2952]
 gi|260450372|gb|ACX40794.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli
           DH1]
 gi|291429415|gb|EFF02435.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli FVEC1412]
 gi|291471769|gb|EFF14252.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294490510|gb|ADE89266.1| peptidylprolyl isomerase [Escherichia coli IHE3034]
 gi|298280287|gb|EFI21791.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli FVEC1302]
 gi|299880017|gb|EFI88228.1| PPIC-type PPIASE domain protein [Escherichia coli MS 196-1]
 gi|300315276|gb|EFJ65060.1| PPIC-type PPIASE domain protein [Escherichia coli MS 175-1]
 gi|300355993|gb|EFJ71863.1| PPIC-type PPIASE domain protein [Escherichia coli MS 198-1]
 gi|300407556|gb|EFJ91094.1| PPIC-type PPIASE domain protein [Escherichia coli MS 45-1]
 gi|300414627|gb|EFJ97937.1| PPIC-type PPIASE domain protein [Escherichia coli MS 115-1]
 gi|300452506|gb|EFK16126.1| PPIC-type PPIASE domain protein [Escherichia coli MS 116-1]
 gi|300843353|gb|EFK71113.1| PPIC-type PPIASE domain protein [Escherichia coli MS 78-1]
 gi|301074512|gb|EFK89318.1| PPIC-type PPIASE domain protein [Escherichia coli MS 146-1]
 gi|305853854|gb|EFM54293.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           NC101]
 gi|306907683|gb|EFN38185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli W]
 gi|307552348|gb|ADN45123.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli ABU 83972]
 gi|307628089|gb|ADN72393.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           UM146]
 gi|308121479|gb|EFO58741.1| PPIC-type PPIASE domain protein [Escherichia coli MS 145-7]
 gi|309700702|emb|CBI99998.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli ETEC
           H10407]
 gi|312290768|gb|EFR18645.1| PPIC-type PPIASE domain protein [Escherichia coli 2362-75]
 gi|312945019|gb|ADR25846.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|315059721|gb|ADT74048.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           W]
 gi|315135123|dbj|BAJ42282.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli DH1]
 gi|315289841|gb|EFU49231.1| PPIC-type PPIASE domain protein [Escherichia coli MS 110-3]
 gi|315294225|gb|EFU53576.1| PPIC-type PPIASE domain protein [Escherichia coli MS 153-1]
 gi|315299565|gb|EFU58813.1| PPIC-type PPIASE domain protein [Escherichia coli MS 16-3]
 gi|315616618|gb|EFU97235.1| PPIC-type PPIASE domain protein [Escherichia coli 3431]
 gi|320186071|gb|EFW60816.1| Peptidyl-prolyl cis-trans isomerase ppiD [Shigella flexneri CDC
           796-83]
 gi|320197085|gb|EFW71704.1| Peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli
           WV_060327]
 gi|323164242|gb|EFZ50049.1| PPIC-type PPIASE domain protein [Shigella sonnei 53G]
 gi|323379714|gb|ADX51982.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli
           KO11]
 gi|323938627|gb|EGB34876.1| ppic-type ppiase domain-containing protein [Escherichia coli E1520]
 gi|323943248|gb|EGB39404.1| ppic-type ppiase domain-containing protein [Escherichia coli E482]
 gi|323952947|gb|EGB48815.1| ppic-type ppiase domain-containing protein [Escherichia coli H252]
 gi|323958634|gb|EGB54337.1| ppic-type ppiase domain-containing protein [Escherichia coli H263]
 gi|324010072|gb|EGB79291.1| PPIC-type PPIASE domain protein [Escherichia coli MS 57-2]
 gi|324010655|gb|EGB79874.1| PPIC-type PPIASE domain protein [Escherichia coli MS 60-1]
 gi|324116929|gb|EGC10842.1| ppic-type ppiase domain-containing protein [Escherichia coli E1167]
 gi|331037759|gb|EGI09979.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli H736]
 gi|331051120|gb|EGI23172.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli M718]
 gi|331054746|gb|EGI26755.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli TA206]
 gi|331060244|gb|EGI32208.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli TA143]
 gi|331081038|gb|EGI52203.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli H299]
          Length = 623

 Score = 98.2 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 104/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|118445143|ref|YP_879240.1| peptidil-prolyl cis-trans isomerase [Clostridium novyi NT]
 gi|118135599|gb|ABK62643.1| peptidil-prolyl cis-trans isomerase [Clostridium novyi NT]
          Length = 247

 Score = 98.2 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/285 (11%), Positives = 82/285 (28%), Gaps = 47/285 (16%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKI----NGELEKIAVQELIVETLKKQEIEKS 93
           M +++  T+NG  IT+ DI + I     ++       + +K  +++LI   +     ++ 
Sbjct: 1   MENKVLATVNGREITENDIQESIKRFPKEQQAYLATEQGKKQLLEQLISFEVFYNYGKEM 60

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
                                                       +  +     +  N  +
Sbjct: 61  EYDKTKEYTTAI-------------------------------EIMERDALTQLSVNKVL 89

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
            +    + E+       K+  V   +I                  ++  K+  E      
Sbjct: 90  SQVELTDKEVEDYYNANKSNFVVGEMISAKHIL---------VDTEELAKEVAEEIKNGM 140

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAI 272
              +   K+++       G      +  + P+F+           + P  TQ G   I +
Sbjct: 141 TFGDAATKYSTCPSKAQGGNLGKFGKGQMVPEFEEAAFNLEIGKVSEPVKTQFGYHLIQV 200

Query: 273 CDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            +K++        +K  +       + +   A  V++L+    + 
Sbjct: 201 EEKQEATEKSFDEVKDLIRTNLLQERQKVKYATTVEELKKKYNVE 245


>gi|257092906|ref|YP_003166547.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257045430|gb|ACV34618.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 336

 Score = 98.2 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/318 (13%), Positives = 91/318 (28%), Gaps = 52/318 (16%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVS-------YKSWAMSSRIRTTINGEVITDGDISKRIA 61
           +      +       +  +    S         + A       T+NG VI+   +   + 
Sbjct: 1   MKLLNSRILLASAASLLVLGACNSDQNAKPAAVAPAAKEAAEATVNGVVISKKRVDMIVK 60

Query: 62  LL--KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                 Q  + E  +  V +LI++TL  +E  K G+      +                 
Sbjct: 61  QAGGNGQADSPEARQGIVDKLIMQTLVAEEAVKKGLDKSPEVIEQI-------------- 106

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
                             +    +    V++       + E+     ++    IT  EY 
Sbjct: 107 ----------------DLMRQSVLASAYVQDLIKNGAASDEVLKAEYERIKATITGSEYK 150

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
            R +L             ++K      +  +   K               S G+  +   
Sbjct: 151 ARHILVEKEAEATAIIAKLKKDPGAFAKLAMEKSK---------DAGSKASGGELGWFDL 201

Query: 240 SDLHPQFQNLLKK-SQNNTT-NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
           S + P+F   + K  +   T  P  T  G   I + D + +  E      +         
Sbjct: 202 SRMVPEFAAAVSKLEKGAITQEPVKTPYGYHVIQLEDSKPI--EAPPFEEVKPHLAQQVQ 259

Query: 298 EKHEAEYVKKLRSNAIIH 315
           +++  +++  L++ A I 
Sbjct: 260 QQNLKKHLDDLKAKAKIE 277


>gi|171915197|ref|ZP_02930667.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verrucomicrobium
           spinosum DSM 4136]
          Length = 351

 Score = 98.2 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/328 (7%), Positives = 81/328 (24%), Gaps = 22/328 (6%)

Query: 7   TSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTIN----GEVITDGDISKRIAL 62
             LS  + L+    +  +         +  A  +R+   +      + IT   +++ +  
Sbjct: 14  HGLSWPVALVMVALIASVAAYW--WHLQDQAHEARVVARVGPATATQEITRHQVAEALRS 71

Query: 63  LKLQKI----------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
           L  ++             +    A+  L+                             + 
Sbjct: 72  LLWRRSETWESLSPQLQQQRRLEALDSLVSSHALHLWALTQPGNEHPTAAEDALQTFIKQ 131

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK-YGNLEMEIPANKQKMK 171
                + +      Q + +   + ++  ++        +   +       EI A  +   
Sbjct: 132 F-EIPDSWRQRSKLQQMNEAQLQAWVEEETRQRLAFDAEMSRRMARVTPDEIKAWLRDHA 190

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVS 230
                   +      +  +         +                    + +     +  
Sbjct: 191 TEVQIPERLSASHVFLSGHDKDKPDRTAEITAYHRRIIAGETTLSALAGEVSEDGRSNKL 250

Query: 231 IGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAY 287
            G   +     +   F +    +     + P+ T+ G   + +  KR          +A 
Sbjct: 251 GGSLGWFSRDRVPANFAEKAFAQKVGELSAPFRTELGWHIVLVHAKRPARPATLEEAQAE 310

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           ++A  T  +     A+  +++     + 
Sbjct: 311 VAAHLTSVRRSAESAKLKEEILKLIPVE 338


>gi|154175136|ref|YP_001408066.1| trimethylamine-n-oxide reductase 1 [Campylobacter curvus 525.92]
 gi|112802868|gb|EAU00212.1| trimethylamiNe-n-oxide reductase 1 (tmaoreductase 1)
           (trimethylamine oxidase 1) [Campylobacter curvus 525.92]
          Length = 272

 Score = 98.2 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/309 (14%), Positives = 89/309 (28%), Gaps = 46/309 (14%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI----SKRIALLKLQKINGE 71
           +  +    I  +   +S  +      +  T++GE I D DI    +  +      K+   
Sbjct: 1   MKKFLFPAILSLAAAISLNAA-----VVATVDGENINDTDISALLAAAMPGFDASKLQPN 55

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
            +K  + +LI   L  ++ + SGI  D   +                             
Sbjct: 56  EKKRIIDDLINRKLLLKDAKASGIEKDPEYIKAV-------------------------- 89

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                  A + I  ++            + E+     K K+   +    R     + D K
Sbjct: 90  -----QAAQEGIAVELYMRKIFDGIKTSDDELRNFYNKNKDSLNQPAQARASHILVEDEK 144

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
             N    Q +    +    +  +          K      G+  +  +S +   F + + 
Sbjct: 145 TANAIIAQLKNLKGDALAKKFAELAQ--ADSIDKGSAAHGGELGWFGQSQMVKPFADAVF 202

Query: 252 KSQNNT--TNPYVTQKGVEYIAICDKRDLGG--EIALKAYLSAQNTPTKIEKHEAEYVKK 307
                +  T P  +Q G   I   D +  G       K  +       K +    +    
Sbjct: 203 SMSKGSVSTKPVKSQFGYHIILKEDSKPAGVVSFEQAKPQIEQAVKMEKFQNTIRQKGDA 262

Query: 308 LRSNAIIHY 316
           LR+ A I Y
Sbjct: 263 LRAKAKIEY 271


>gi|24111825|ref|NP_706335.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella flexneri
           2a str. 301]
 gi|30061943|ref|NP_836114.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella flexneri
           2a str. 2457T]
 gi|24050617|gb|AAN42042.1| putative protease maturation protein [Shigella flexneri 2a str.
           301]
 gi|30040187|gb|AAP15920.1| putative protease maturation protein [Shigella flexneri 2a str.
           2457T]
 gi|281599781|gb|ADA72765.1| putative protease maturation protein [Shigella flexneri 2002017]
 gi|332760732|gb|EGJ91020.1| PPIC-type PPIASE domain protein [Shigella flexneri 4343-70]
 gi|332761539|gb|EGJ91821.1| PPIC-type PPIASE domain protein [Shigella flexneri 2747-71]
 gi|332768363|gb|EGJ98547.1| PPIC-type PPIASE domain protein [Shigella flexneri 2930-71]
 gi|333008057|gb|EGK27533.1| PPIC-type PPIASE domain protein [Shigella flexneri K-218]
 gi|333021934|gb|EGK41182.1| PPIC-type PPIASE domain protein [Shigella flexneri K-304]
          Length = 623

 Score = 98.2 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 104/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLV 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|323191361|gb|EFZ76624.1| PPIC-type PPIASE domain protein [Escherichia coli RN587/1]
          Length = 623

 Score = 98.2 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 104/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|320109145|ref|YP_004184735.1| SurA domain-containing protein [Terriglobus saanensis SP1PR4]
 gi|319927666|gb|ADV84741.1| SurA domain protein [Terriglobus saanensis SP1PR4]
          Length = 360

 Score = 98.2 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/336 (12%), Positives = 102/336 (30%), Gaps = 41/336 (12%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI----- 75
           +LI   +   ++       + +  ++NG+ I   D+ +       Q  N +         
Sbjct: 16  LLIAGTLSLALTGCHPTHGADVVASVNGKAIPRADLDRFYQSQMAQNQNQQPVNEDQADS 75

Query: 76  ----AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
                ++ LI E + +Q   K  +T  +  V+    +       + E F+  L       
Sbjct: 76  ARLTILRSLIDEEIIQQRAAKMNLTASNEDVDAKVTEMKA--PYTEEQFNERLKASNHTL 133

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT--------- 182
           +  K+ +     +  ++  +   K    + ++ +     K+                   
Sbjct: 134 DDMKREIRRSLTFDKLLNKEINSKINITDGDVSSYYAAHKSEYNLMETQYHLGQVLVTSF 193

Query: 183 ---VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLL 238
                 ++  +K  N    +K+I+  +               F+       + G   ++ 
Sbjct: 194 PSPQAVNLQSSKATNDAEAKKKIQTLKNRIDSGEDFSAIAMNFSENPQTAQNGGDMGFIS 253

Query: 239 ESDLHPQFQNL---LKKSQNNTTN----------PYVTQKGVEYIAICDKRDLG----GE 281
           ES LH    +     K      T+          P     G   + +  +   G     +
Sbjct: 254 ESQLHTDILSYTAVTKLKAGQVTDILPVFDQPASPSKKVVGYVILKLISRDAAGQRLLTD 313

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            A++  +  Q    +    +  Y + LR+ + +  Y
Sbjct: 314 PAVQQNIRQQLHDARSTLLKNAYFEMLRNQSKVENY 349


>gi|262404271|ref|ZP_06080826.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. RC586]
 gi|262349303|gb|EEY98441.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. RC586]
          Length = 619

 Score = 98.2 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/403 (7%), Positives = 98/403 (24%), Gaps = 91/403 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + +Y   +  +     +    I+ GD  +  
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYL-ISGGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +  +                    K  +  ++ + L +Q     G+      V  
Sbjct: 60  QNERNRMQSQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDQQVRQ 119

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN----------- 150
                 Q         E + + L + G   + F +YL    +   ++             
Sbjct: 120 MILDMPQFQSQGQFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMSALQGSEFSLPGE 179

Query: 151 ----------------------DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                 DF  K    + +I    +       R   ++     + 
Sbjct: 180 VNLQDQLISQTRDIRTITLSLADFAKKVTLSDDDIQQYYKANTERFTRPEQMKVSYVELS 239

Query: 189 DNKLQNQGFV---------------------------------QKRIKDAEESRLRLPKD 215
            + L+ Q  +                                 +++ +   +        
Sbjct: 240 ADALKKQIMIDDEAAQEYYQEHLDKYSTAEQRKVSHILVEGSDEQKAQAILDELNAGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               ++ +  +      G   ++    + P F+            +    ++ G   I +
Sbjct: 300 ATVAKEKSQDVGSAQEGGALGWIERDTMDPAFEAAAFALTENGQISGLVKSEFGYHIIRL 359

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            + +   +     +   +  +    +          +L   A 
Sbjct: 360 DEVKAPVVKPYTEVAKAVKQELVDQQALDAFYTKQSELEKLAF 402


>gi|223936140|ref|ZP_03628054.1| PpiC-type peptidyl-prolyl cis-trans isomerase [bacterium Ellin514]
 gi|223895362|gb|EEF61809.1| PpiC-type peptidyl-prolyl cis-trans isomerase [bacterium Ellin514]
          Length = 350

 Score = 98.2 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/324 (12%), Positives = 102/324 (31%), Gaps = 20/324 (6%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMS---SRIRTTINGEVITDGDIS----KRIALLKL 65
           I  +  + +L +  +    +    A +   + IR  +   +IT   +     +    ++ 
Sbjct: 27  IYRMRFFCILTLTGLSFCSAMCLNARAELVNGIRAIVADSIITYQQVELLVGRDADFIRH 86

Query: 66  QKINGELEKIA---------VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
           Q  N   E            +  LI   L   + + SG       ++       +     
Sbjct: 87  QYQNNPQEYQLRMVDLMGKGLTNLIQRELVLHDFQNSGFNVPETIIDEIVQDRIKEKYSD 146

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
               +  L K+G+    FK+ +    I+ ++ + +          +I    Q+ +     
Sbjct: 147 RVQLTKQLQKEGLTFEQFKKQIRDDLIYREMYRKNVPETI-MSPHKIETFYQEHQADFKV 205

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
              I+T +  +       +G  +KR ++                 ++        G A +
Sbjct: 206 ADEIKTRIIVLNKPADDTEGSTKKRAQEIISQLKNGAAFSEMASVYSEGSTRAQGGDAGW 265

Query: 237 LLES-DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNT 293
              S  L P  + + K      T+   T      + + D+R    +    ++  +    T
Sbjct: 266 QETSVVLKPIAEAVSKLKSGEYTDVIETPTACFLVLLEDRRPAHVKPLRDVQDDIERTLT 325

Query: 294 PTKIEKHEAEYVKKLRSNAIIHYY 317
             +  +   +++ ++     + ++
Sbjct: 326 AQENFRLYRKWIDRIEKKTFVRFF 349


>gi|295694759|ref|YP_003587997.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus tusciae DSM
           2912]
 gi|295410361|gb|ADG04853.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus tusciae DSM
           2912]
          Length = 305

 Score = 98.2 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 95/302 (31%), Gaps = 24/302 (7%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-----ELEK 74
               +F  +  +   +   SS +  T +G  +   ++ K+  L +L          +   
Sbjct: 6   LAGALFVTLLAILALAGCGSSDVVATFDGGQVHRAELDKQFKLQRLLIAPQYPDTPQNRL 65

Query: 75  IAVQELI-VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
             +Q+ I +  +  Q+ ++ GIT     +     Q+ +         +  L+K+      
Sbjct: 66  EVLQQYIVMHDILDQKAKQEGITVSDKELADTVAQYRQQLIQYVYGNADALNKKMAELGL 125

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
               L   +    + +  F       + EI A  +          +   ++         
Sbjct: 126 QDNDLQALARDDILAQKYFAKHLSVSDEEIQAYYKDHPADYTIAKVAHILV--------- 176

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS 253
                ++  +  E   L+        ++ +        G+      S     FQ+   K 
Sbjct: 177 ---KTKQEAEQVEARILKGESFAQIAKEVSLDPSKDQGGELPEGPLSQWVGPFQDAAMKL 233

Query: 254 Q-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
                ++P  TQ G   + +  +R +     +K  +  +    K ++    +  + + +A
Sbjct: 234 PIGQISDPVQTQFGWHILRVDSRR-VEPLSQVKDQVKNKVMQMKEQQ----WFNQAKQDA 288

Query: 313 II 314
            I
Sbjct: 289 HI 290


>gi|293603514|ref|ZP_06685936.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
           43553]
 gi|292818100|gb|EFF77159.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
           43553]
          Length = 335

 Score = 98.2 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 85/285 (29%), Gaps = 40/285 (14%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GELEKIAVQELI 81
             + K       I   ++ +VIT  ++      +  +  +          L+   +Q LI
Sbjct: 51  APAPKGEQFVDGIAAVVDKDVITLRELRDASVRISSELKSRGIQVPDDQTLQHQVLQRLI 110

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
           +E +++ E ++ GI  D   V+      A    +S     + ++K G G + +++ L  +
Sbjct: 111 MERVQRHEADRLGIRVDDAQVDQAIQTIAARNKISVAQLRAEIEKSGAGWDAYRKSLREE 170

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI---------------------------- 173
                + +          + E+ A  +  +                              
Sbjct: 171 IRTDRLRQRAVDSNIVISDTEVDAFLKDQRRNPAFGAAPQAQPEPQPQAQPQPAPEQAAA 230

Query: 174 --TVREYLIRTVLFSIPDNKLQNQ-GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS 230
                 Y +  +L  +P+     Q   ++K+ +D      R     +     +     + 
Sbjct: 231 PSGPMLYALAQILVRVPEGSSPEQLAALRKKAEDVLARAKRGDDFASLAAASSDGPEALQ 290

Query: 231 IGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICD 274
            G             F + +    +   +    +  G   I + D
Sbjct: 291 GGVMGVRPLDGWPDLFVKAISNLQKGQVSGLIQSGNGFHIIKVMD 335


>gi|256020413|ref|ZP_05434278.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella sp. D9]
 gi|332281592|ref|ZP_08394005.1| conserved hypothetical protein [Shigella sp. D9]
 gi|320201685|gb|EFW76261.1| Peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli EC4100B]
 gi|332103944|gb|EGJ07290.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 623

 Score = 98.2 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 104/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|218549891|ref|YP_002383682.1| peptidyl-prolyl cis-trans isomerase [Escherichia fergusonii ATCC
           35469]
 gi|218357432|emb|CAQ90071.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia
           fergusonii ATCC 35469]
          Length = 638

 Score = 98.2 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/396 (9%), Positives = 104/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +NG+ I+ G      
Sbjct: 16  MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNGQEISRGQFENAF 74

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q      +      V  
Sbjct: 75  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYSRDLKLGISDEQVKQ 134

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             +++ L++ G+  + + Q L  Q     ++             
Sbjct: 135 AIFATPAFQVDGKFDNSRYNAILNQMGMSADQYAQALRNQLTTQQLINGIAGTDFMLKGE 194

Query: 149 ---------KNDFMLKYGN-----------LEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               + EI +   + KN  V     R     + 
Sbjct: 195 TDELAALVSQQRVVREATIDVNAKAEKQQVSDAEITSYYDQHKNNFVTPEQFRVSYIMLD 254

Query: 189 DNKLQNQGFVQKRIKDAEESRLRL-----------------------------PKDCNKL 219
              +Q            ++ + +                                     
Sbjct: 255 AANIQQPVSDADIQAYYDQHQDQFTQPQRVRYSIIQTKTENEAKAVLDALNNGGDFAELA 314

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L +S    + ++   K +   +    +  G   + + D +  
Sbjct: 315 KEKSADIISARNGGDLGWLEDSTTPQELKDAGLKDKGQLSGVIKSSVGFLVVRLDDVQPA 374

Query: 279 GGEI--ALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 375 KVKTLAEVRDDIAAKVKHEKALDAYYALQQKVSDAA 410


>gi|218693904|ref|YP_002401571.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           55989]
 gi|218350636|emb|CAU96328.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           55989]
          Length = 623

 Score = 98.2 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 104/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y   +  +     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYL-ISGGNNYAAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|194435312|ref|ZP_03067524.1| peptidylprolyl isomerase [Shigella dysenteriae 1012]
 gi|194416444|gb|EDX32601.1| peptidylprolyl isomerase [Shigella dysenteriae 1012]
 gi|332085739|gb|EGI90903.1| PPIC-type PPIASE domain protein [Shigella dysenteriae 155-74]
          Length = 623

 Score = 98.2 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 105/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFAIPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEESRLRL-----------------------------PKDCNKL 219
              +Q            ++ + +                                     
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDGLNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|323963431|gb|EGB58993.1| ppic-type ppiase domain-containing protein [Escherichia coli H489]
          Length = 623

 Score = 98.2 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 104/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|320178277|gb|EFW53251.1| Peptidyl-prolyl cis-trans isomerase ppiD [Shigella boydii ATCC
           9905]
          Length = 623

 Score = 98.2 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 104/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|311106582|ref|YP_003979435.1| peptidyl-prolyl cis-trans isomerase [Achromobacter xylosoxidans A8]
 gi|310761271|gb|ADP16720.1| peptidyl-prolyl cis-trans isomerase [Achromobacter xylosoxidans A8]
          Length = 653

 Score = 98.2 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/408 (10%), Positives = 106/408 (25%), Gaps = 98/408 (24%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + +    +++ +    ++  F +V I  Y S+  +     T+NG+ +T  +  +  
Sbjct: 1   MFEFIRSH-RRWMQFILLLLIVPSFFLVGIQGYDSFMRAEPELATVNGQPVTRAEFDQAH 59

Query: 61  ALLKLQKIN-------------GELEKIAVQELIVETLKKQEIEKSGITFDSN---TVNY 104
                Q                  L +  + +LI + L       +  +           
Sbjct: 60  RNQLEQFRQRLGAQFDPAVIDTPALREGLLNQLINQRLLANVAVDNRFSVSDETLRNTIA 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK--------------- 149
              +   N   S E +   L  QG+    F+  L        V++               
Sbjct: 120 AIPEVQDNGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVARVLEPVGQSARAPGEVVAA 179

Query: 150 ------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                              DF  +      +I A     K        ++     + +  
Sbjct: 180 LETALTQQRTVQLRRFAAADFRSQVSATPADIQAWYDANKQQLQIPEQVQVQYLVLDEAA 239

Query: 192 LQNQGFVQKRI--KDAEESRLRLPKD----------------------------CNKLEK 221
                 V+        E+++ R  +                              +  ++
Sbjct: 240 ATQGVQVKDEDLASYYEQNKNRFGQPERRRASHIMINLAPGASEDARKAARAKAEDLAKQ 299

Query: 222 FASKI---------------HDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQK 265
            A+                    + G   +L    L  P  + +  ++++  +    T  
Sbjct: 300 AAADPAQFAELARKNSQDAGSAANGGDLGWLAPGMLTGPLEKAIFGQAKDQVSGVIETPS 359

Query: 266 GVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           G+  + + + +         +K  ++A+          +E   +L   
Sbjct: 360 GLHVVKVTEIQPAAIKPLAEVKDQITAEVRKQLAAVRFSEMASQLNKQ 407


>gi|325479565|gb|EGC82661.1| putative peptidylprolyl isomerase PrsA2 [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 354

 Score = 98.2 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 91/284 (32%), Gaps = 23/284 (8%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLK-LQKINGELEKIAVQELIVETLKKQEIEK 92
            S  +  +    ++GE I+  D    ++    +     +L+   V  ++ + L   +I+K
Sbjct: 43  SSEKLDDKTVAIVDGEKISKDDYKSELSFYASMLASQQQLKNSIVTMMVQDKLIANDIKK 102

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
           + I  D   V    +Q  +N G       +  D     D   +       +     +  F
Sbjct: 103 NDIKVDDKEVEDALMQSVQNFGGQENFDKTLDDYNMELDKFKETLKKD--LMYKKHREWF 160

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
                  + EI    +  K+   +      ++              ++   D +      
Sbjct: 161 DENNKVTDDEIKKYFEDNKDEFAKVDASHILV------------EDEQTANDIKARLDNG 208

Query: 213 PKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYI 270
               +  ++++       + G      +  +  +F++      +   + P  +Q G   I
Sbjct: 209 EDFASLAKEYSKDTASAQNGGALGAFAKGQMVKEFEDAAFSMKEGEISAPVKSQFGYHII 268

Query: 271 AICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            +   +D       K  ++ +    K     A+Y+KKL   + +
Sbjct: 269 KVNSIKD--SFEDSKEEITKKIKDQK----YADYIKKLHEESNV 306


>gi|331645617|ref|ZP_08346721.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli M605]
 gi|331045779|gb|EGI17905.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli M605]
          Length = 623

 Score = 98.2 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/396 (9%), Positives = 103/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                N    K    E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREAAIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|281177612|dbj|BAI53942.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli SE15]
          Length = 623

 Score = 98.2 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/396 (9%), Positives = 103/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                N    K    E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREAAIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|332341805|gb|AEE55139.1| peptidyl-prolyl cis-trans isomerase PpiD [Escherichia coli UMNK88]
          Length = 623

 Score = 98.2 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 104/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|331671987|ref|ZP_08372783.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli TA280]
 gi|320173739|gb|EFW48922.1| Peptidyl-prolyl cis-trans isomerase ppiD [Shigella dysenteriae CDC
           74-1112]
 gi|331070976|gb|EGI42335.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli TA280]
          Length = 623

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 104/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|169633358|ref|YP_001707094.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii SDF]
 gi|169152150|emb|CAP01052.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii]
          Length = 441

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/314 (13%), Positives = 105/314 (33%), Gaps = 20/314 (6%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAM-SSRIRTTINGEVITDGDISKRIA----LLKLQK- 67
           K L  +F      ++   S  S+A  +  +   ++  VI   D+ + +A     L+ QK 
Sbjct: 9   KHLKQFFKATTLAVLISSSMHSFAQPTDEVVAIVDNSVILKSDLEQGMAEAAHELQAQKK 68

Query: 68  ---INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS--AEDFSS 122
                  L+   + +LI+   + ++++K GI  D  ++N   ++ A  +G          
Sbjct: 69  EVPPQQYLQFQVLDQLILRQAQLEQVKKYGIKPDEKSLNEAVLKVASQSGSKSLEAFQQK 128

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
                     + +  +A       + +   M +    + ++    +  +           
Sbjct: 129 LDAIAPGTYENLRSRIAEDLAINRLRQQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHV 188

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
           +   I  +  Q    V K ++        L    N L+KF++    V      +   SD+
Sbjct: 189 IHMRISGDNPQEVQNVAKEVRSQLAQNNDL----NALKKFSTATVKVEGADMGFRPLSDI 244

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD----LGGEIALKAYLSAQNTPTKI 297
             +    +       TT+    + GV  + + +++              ++  Q +    
Sbjct: 245 PAELAARITPLQDGQTTDLISVRDGVHVLKLLERKQNEQKALVPQYQTRHILIQPSEVVS 304

Query: 298 EKHEAEYVKKLRSN 311
            ++  + +  +   
Sbjct: 305 PENAKQIIDSIYKR 318



 Score = 88.2 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/270 (11%), Positives = 89/270 (32%), Gaps = 6/270 (2%)

Query: 50  VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
            I+D D+   +   + Q   G  +   +   I     ++    +         N      
Sbjct: 163 KISDQDVDNFLKSPQGQAALGN-QAHVIHMRISGDNPQEVQNVAKEVRSQLAQNNDLNAL 221

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
            + +  + +   + +  + + D   +    I  +      +   ++ G   +++   KQ 
Sbjct: 222 KKFSTATVKVEGADMGFRPLSDIPAELAARITPLQDGQTTDLISVRDGVHVLKLLERKQN 281

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HD 228
            +   V +Y  R +L     +++ +    ++ I    +              +++     
Sbjct: 282 EQKALVPQYQTRHILIQP--SEVVSPENAKQIIDSIYKRLKAGEDFATLAATYSNDTGSA 339

Query: 229 VSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE-IALKA 286
              G   ++    + P+F + + +      + P+ TQ G   + + DKR+        + 
Sbjct: 340 RDGGSLGWVTPGMMVPEFDKKMQEIPVGEISEPFQTQFGWHILQVTDKREKDMTHEYQER 399

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                    +       +++++R+NA +  
Sbjct: 400 MARQILGERQFNTEIDSWLREVRANAYVEI 429


>gi|333008127|gb|EGK27602.1| PPIC-type PPIASE domain protein [Shigella flexneri VA-6]
          Length = 623

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 104/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLV 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|304395503|ref|ZP_07377386.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. aB]
 gi|304356797|gb|EFM21161.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. aB]
          Length = 622

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/396 (8%), Positives = 102/396 (25%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + ++ +  +    +++ F +  + +Y     +      +NG+ I+ G + +  
Sbjct: 1   MMDNLRAASNNVVLKIILGLIMVSFVLTGVGNYLIGGNNDY-AAKVNGQEISRGQLEQAF 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + ++                   ++ + A+ +LI + L    I+   ++   + V  
Sbjct: 60  NSERSRQQQMLGDQFSQLASNDGYMQQIRQQALSQLIDQALLDSYIKDLHLSISDDQVKQ 119

Query: 105 FFVQHARNTGLSAEDFSSFLD---KQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
                         D + +L      G   + + + L  Q     ++             
Sbjct: 120 AIFNQQAFQTNGKFDNAKYLALIGNMGFSADQYAEALRKQLSNQQLINAVANTDFTLKGE 179

Query: 152 -----------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                     K    + EI    Q+ K   +     R     + 
Sbjct: 180 ASKLVDLVSQQRDIRQATLDVNALAAKQTVTDDEISQYYQQHKTSFMAPEQFRVSYILMD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                      +  
Sbjct: 240 AASMQQDASEADIQAWYDQHKADYTQPQRTRYSVIQTKTEADANAVLAQLKGGASFADVA 299

Query: 220 EKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           +  +         G   +L  S    + +N     +   +    +  G   + + D +  
Sbjct: 300 KAKSIDPISARKGGDMGWLEPSTTPDELKNAGLTQKGQMSGVIKSSVGFLVVRLDDIQPE 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    +++ ++A+    K      +  +K+   A
Sbjct: 360 QVKPLNDVRSAIAAKVKQEKGVDAFYKLQQKVSEAA 395


>gi|157156448|ref|YP_001461628.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           E24377A]
 gi|157078478|gb|ABV18186.1| peptidylprolyl isomerase [Escherichia coli E24377A]
          Length = 623

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 104/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|183597819|ref|ZP_02959312.1| hypothetical protein PROSTU_01149 [Providencia stuartii ATCC 25827]
 gi|188022575|gb|EDU60615.1| hypothetical protein PROSTU_01149 [Providencia stuartii ATCC 25827]
          Length = 439

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/307 (12%), Positives = 103/307 (33%), Gaps = 16/307 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +++        +  +     ++   +N  V+ + D+   +  +KL   N          L
Sbjct: 7   LILGLMFASSTALAAPQQMDKVAAVVNNGVVLESDVQNMLNTVKLNARNAGQQIPDDETL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI + +  Q   +  I      VN      AR  GL+ E   + L   GI   
Sbjct: 67  RHQILERLITDNIMLQMANQMQINIPEEAVNATIADIARQNGLTFEQMQARLKADGIDMA 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + +  +V  N+   +   L  E+ +  +++ +    E  +      IP  + 
Sbjct: 127 KYRSEIRKEMLIAEVRNNEVRRRVTILPQEVESLAKQISSQADYEASVNLSHILIPLPEN 186

Query: 193 QNQGFVQKRI---KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QN 248
             Q  +QK         +   +          +++    +  G   +    +L   F + 
Sbjct: 187 PTQEQLQKADAIVAKIMDEIKKGTNFGKLAIAYSADPQALKGGNMGWSRLQELPVVFAEQ 246

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDK----RDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
           L    + +   P  +  G   + + +     + +        ++  +++P   +    + 
Sbjct: 247 LKSAKKGDVVGPIRSGVGYHILRVNEMNSANKTISVTEVKARHILIKSSPIMDDNQARQK 306

Query: 305 VKKLRSN 311
           + ++  +
Sbjct: 307 LTQITQD 313



 Score = 79.7 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 60/166 (36%), Gaps = 4/166 (2%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                G   + +       K I+V E   R +L         NQ   QK  +  ++ R  
Sbjct: 259 IRSGVGYHILRVNEMNSANKTISVTEVKARHILIKSSPIMDDNQA-RQKLTQITQDIRSG 317

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEY 269
                N  ++F+      +  G+  + +     P F++  ++ ++   + P  +  G   
Sbjct: 318 KTTFENAAKEFSEDPGSALKGGELGWNMPDVYDPAFRDALMRLNKGEISQPVRSNFGWHL 377

Query: 270 IAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           I + D R++   + A K          K  +    +V++ R+ A +
Sbjct: 378 IQLEDTRNVDKTDAAQKDQAYRLLFNRKFNEEAQSWVQEQRAAAYV 423


>gi|313672612|ref|YP_004050723.1| ppic-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939368|gb|ADR18560.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 313

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/297 (10%), Positives = 90/297 (30%), Gaps = 17/297 (5%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALL------------KLQKINGELEKIAVQELIV 82
           S   +      +    I++ +++  +  +            +      E++   V+ L+ 
Sbjct: 15  SVFAADVTVAKVGKVNISEKEVNIILNDIVMKQGIDPRTIDQNNPKVAEVKNDIVKNLVQ 74

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
             +      KS         +  +    +      +  ++            ++      
Sbjct: 75  REILLTLAMKSIPKDIDKKTSESYENLKKKYKDPKDFENAMKSAGTNEKEVKEKIKKNLI 134

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           +   V  N         E E     +K K+I     +++     I  +  QN    + +I
Sbjct: 135 LENYV--NSIAKDIKITEQEKKDFYEKNKDIFKDPEMVKASHILIKVDDKQNDKDAKSKI 192

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPY 261
               +            +K++      + G   +     +  +F+N+   +     + P+
Sbjct: 193 DSIYKELKSGKSFEELAKKYSQDGSAANGGDLGFFPRGAMVKEFENVAFSTPAGKFSEPF 252

Query: 262 VTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            TQ G   + + +KR         +  ++  +    K++    + V++ + +  +  
Sbjct: 253 KTQYGYHIVKVTEKRPAKTYTYEEVSNHIEGKLRMDKLKGILDKKVEEGKKSVKVEI 309


>gi|193064188|ref|ZP_03045272.1| peptidylprolyl isomerase [Escherichia coli E22]
 gi|194428997|ref|ZP_03061529.1| peptidylprolyl isomerase [Escherichia coli B171]
 gi|260842642|ref|YP_003220420.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O103:H2 str.
           12009]
 gi|192929217|gb|EDV82827.1| peptidylprolyl isomerase [Escherichia coli E22]
 gi|194412934|gb|EDX29224.1| peptidylprolyl isomerase [Escherichia coli B171]
 gi|257757789|dbj|BAI29286.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O103:H2 str.
           12009]
 gi|323160448|gb|EFZ46396.1| PPIC-type PPIASE domain protein [Escherichia coli E128010]
          Length = 623

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 105/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEESRLRL-----------------------------PKDCNKL 219
              +Q            ++ + +                                     
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNEGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|260853664|ref|YP_003227555.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O26:H11 str.
           11368]
 gi|257752313|dbj|BAI23815.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O26:H11 str.
           11368]
 gi|323153478|gb|EFZ39732.1| PPIC-type PPIASE domain protein [Escherichia coli EPECa14]
          Length = 623

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 104/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKVVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|209917658|ref|YP_002291742.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           SE11]
 gi|218553008|ref|YP_002385921.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli IAI1]
 gi|293418512|ref|ZP_06660947.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli B088]
 gi|300818227|ref|ZP_07098438.1| PPIC-type PPIASE domain protein [Escherichia coli MS 107-1]
 gi|209910917|dbj|BAG75991.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli SE11]
 gi|218359776|emb|CAQ97317.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           IAI1]
 gi|291325040|gb|EFE64455.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli B088]
 gi|300529118|gb|EFK50180.1| PPIC-type PPIASE domain protein [Escherichia coli MS 107-1]
 gi|323184728|gb|EFZ70099.1| PPIC-type PPIASE domain protein [Escherichia coli 1357]
 gi|323945347|gb|EGB41403.1| ppic-type ppiase domain-containing protein [Escherichia coli H120]
 gi|324016698|gb|EGB85917.1| PPIC-type PPIASE domain protein [Escherichia coli MS 117-3]
          Length = 623

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 104/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|159043736|ref|YP_001532530.1| SurA domain-containing protein [Dinoroseobacter shibae DFL 12]
 gi|157911496|gb|ABV92929.1| SurA domain protein [Dinoroseobacter shibae DFL 12]
          Length = 398

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 97/248 (39%), Gaps = 5/248 (2%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
            + +  +L +  ++   +         +  T+N E I+  ++ +R   +   ++ G+  +
Sbjct: 2   RVISTALLALAMLIGQPATSQAQTFGPVI-TVNNEGISGYELEQREKFVTALRLPGDPAR 60

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
           +A + LI + LK Q    +G+    + +     + A    L+ E F + L  +G+    F
Sbjct: 61  LAREGLIEDKLKLQAARAAGLEIGIDELELGLEEFASRANLTTEQFIAALADEGVAPETF 120

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
           + ++    +W ++++  F  +    + E+          +     +  ++   P ++   
Sbjct: 121 RDFVRADLVWRELIRQRFGPRARVSDAEVERALALQGAASGARIRVAEIIIPTPPDRRVE 180

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS- 253
              +   I++  ++  +        ++F++     + G   ++  S+L P     L    
Sbjct: 181 AETLAANIRERVQTTAQFS---EAAQRFSAASSRANGGLRDWIAVSELPPGLAQRLLTLG 237

Query: 254 QNNTTNPY 261
             + ++P 
Sbjct: 238 PGDVSDPV 245



 Score = 40.4 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 1/77 (1%)

Query: 239 ESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE 298
            +++       L    N  +       G E+I +C  R    E   +  L  Q    ++ 
Sbjct: 323 AAEIPSDIATALAGLDNQESTEIARAGGREHIMLC-TRTTALEEDDEGTLRRQLLNQRLG 381

Query: 299 KHEAEYVKKLRSNAIIH 315
            + A Y+++L + A I 
Sbjct: 382 SYAANYLQELLAEATIQ 398


>gi|258513569|ref|YP_003189791.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777274|gb|ACV61168.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 327

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 90/297 (30%), Gaps = 29/297 (9%)

Query: 41  RIRTTINGEVITDGDISKRIALLK---------------LQKINGELEKIAVQELIVETL 85
            +  T+NGE IT   + KR++++K                QK+   ++   + E+I +TL
Sbjct: 23  NVVATVNGEEITQQQLDKRVSIVKDYYEKQYGQKIEGQDAQKLIDNMKPGLLDEMISDTL 82

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
           K+QE  K G       +        +              K  +      +      +  
Sbjct: 83  KRQEARKVGKDMTDQQIQEKIDGVKKQFPNEEAF------KNFLAQQDLTEKDMAYMLNL 136

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK----LQNQGFVQKR 201
             V    +      E++   ++ K +  T  +Y +R +L S   +        +   +K 
Sbjct: 137 QDVVLKDVKAPTEEEVQEYYDQNKEQFKTAEQYEVRHILISTDPDDAGNVKHTEAEAEKL 196

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTT-N 259
                              + +  +     G      + D  P+F+           T  
Sbjct: 197 AVQVLADIKNGKDFAALAREKSEDLGSKDNGGLYTFKKGDTVPEFEKAALALKPGEYTRE 256

Query: 260 PYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           P  TQ G   I +             +K  +  Q      +     Y++ L+  A I
Sbjct: 257 PVKTQFGYHIIKLEKLIPARDQSFAEVKDGIKQQLDQEAKKNKFNAYLEDLKKKAKI 313


>gi|15893571|ref|NP_346920.1| peptidil-prolyl cis-trans isomerase [Clostridium acetobutylicum
           ATCC 824]
 gi|15023118|gb|AAK78260.1|AE007541_5 Peptidil-prolyl cis-trans isomerase [Clostridium acetobutylicum
           ATCC 824]
 gi|325507691|gb|ADZ19327.1| Peptidil-prolyl cis-trans isomerase [Clostridium acetobutylicum EA
           2018]
          Length = 247

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/282 (10%), Positives = 78/282 (27%), Gaps = 39/282 (13%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
           M +++   +NG+ IT+ D++  I     ++    L     + L+ E +            
Sbjct: 1   MENKVLAVVNGQEITESDLNATINSFPEERRRQFLNPEGRKRLLDEIV------------ 48

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                       A+++G+  ++      +              Q +    +         
Sbjct: 49  ----SFELVYNDAKDSGIEEQEVVKAQIEN----------ARKQILTHASLD-KIFSDIV 93

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             + E+    +  K +      +                  ++      E          
Sbjct: 94  VADSEVEKYYEANKEMFKDPEKVAAKHIL---------VQTEEDALKIREEIKEGKTFEE 144

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR 276
              +++S       G         + P+F+     +       P  TQ G   I +  K 
Sbjct: 145 AAAEYSSCPSKERGGDLGAFTRGQMVPEFEEAAFSQEIGEVGAPVKTQFGYHLIKVEGKI 204

Query: 277 DLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +       ++K  +  +    +     + Y+ +L++   +  
Sbjct: 205 EPAQRDFPSVKDAIKNRLLQERQSMKYSWYIDQLKNKYKVEI 246


>gi|120599410|ref|YP_963984.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           W3-18-1]
 gi|146292594|ref|YP_001183018.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           putrefaciens CN-32]
 gi|120559503|gb|ABM25430.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           W3-18-1]
 gi|145564284|gb|ABP75219.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           putrefaciens CN-32]
 gi|319425896|gb|ADV53970.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           putrefaciens 200]
          Length = 618

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/405 (10%), Positives = 94/405 (23%), Gaps = 93/405 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+       I       V++ F    + SY   + +      +NG+ IT  ++ +  
Sbjct: 1   MLEKIRDGSQGVIAKSILVLVILSFAFAGVSSYLG-STTDVPAAEVNGDKITKAELEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     +++  ++ L+ + L  Q     G+      +  
Sbjct: 60  QSERSRMEQQLGEMFAALSADERYLESIKQSVLERLVADKLIDQAASTMGLRVSDEQIIT 119

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
                     +     E + + L + G     F+  + +      +              
Sbjct: 120 AIKLEPAFQTDGKFDNERYQAILRQLGYQPQSFRNMMRVDMTRRQLTAALVGTEFVLPSE 179

Query: 152 -----------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVL---- 184
                                  F+      + ++       +   +    +        
Sbjct: 180 AKQLAELQGQTRDIRYLVVDSAPFLANATVTDEQVKNYYDANQGQFMSPEQVSLEYVELN 239

Query: 185 ---------------FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK---- 225
                           +  D         +KR+               K    A +    
Sbjct: 240 AADFAKNSPVTDEEAQAYYDEHKTQYLANEKRLAAHILINADQDDAATKAADLAKQLDNG 299

Query: 226 --------------IHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYI 270
                         +     GK ++     + P F   L   ++   +    T  G   I
Sbjct: 300 ADFAELAKAHSDDRLSAEQGGKLEWFEPGVMEPTFDAALFALNKGEHSAVVKTGFGYHII 359

Query: 271 AICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            + D +         +KA + AQ    K          KL   + 
Sbjct: 360 KLLDVQAGATVPFADVKAKIVAQLQDKKAVDQFYSLQSKLADTSY 404



 Score = 36.6 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 40/131 (30%), Gaps = 4/131 (3%)

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
               N     K+ +  E +R +  +   +++  A+ +  VS  K     ++         
Sbjct: 485 EVKANITERLKQDQANEAARAKAQELMTQVKAAATDLGLVSKVKLGRGEQNVDAAIVGKA 544

Query: 250 LKKSQNNTTNPYVT---QKGVEYIAICDKRDLG-GEIALKAYLSAQNTPTKIEKHEAEYV 305
            +    ++T          G   IA+            L   L  +      E      +
Sbjct: 545 FQMPTPSSTPVVDIVGLANGYAVIALDKVNAAEGVSDELVNALKQRLNAQYSEADYRGLI 604

Query: 306 KKLRSNAIIHY 316
             L++NA + Y
Sbjct: 605 DSLKANAKVVY 615


>gi|333010902|gb|EGK30328.1| PPIC-type PPIASE domain protein [Shigella flexneri K-272]
 gi|333020704|gb|EGK39964.1| PPIC-type PPIASE domain protein [Shigella flexneri K-227]
          Length = 623

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 105/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                +            ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATSAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPATEQEIASYYEQNKNNFMTSEQFRVSYIKLV 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AAMMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|289579378|ref|YP_003478005.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           italicus Ab9]
 gi|289529091|gb|ADD03443.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           italicus Ab9]
          Length = 301

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/305 (11%), Positives = 89/305 (29%), Gaps = 16/305 (5%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ-KINGELEK 74
           +     LI+     +    S +    +  T+NGE IT+ +  K    +K Q + + +  K
Sbjct: 1   MKRKIALILSFGFIVFLLVSCSAKKEVVATVNGENITNAEYRKAFDQVKAQIESSPQYTK 60

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
               +          ++++ +                N  ++ ++      ++   +   
Sbjct: 61  DIWNQDYEGKKFLDVVKENVLDSLIAQKLLLQEALKNNVTVTDKEIEEEYQREKEFNKDI 120

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
            +      +  + +  ++       E E+    +  K+          ++          
Sbjct: 121 TKEEVKNYLLINKLFEEYTKDVKVTEEELKKYYEDNKDRFETVKASHILVSD-------- 172

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK- 252
               +K  +D     ++        ++++         G         + P+F+ +    
Sbjct: 173 ----EKIAQDIYNRLMKGEDFSTLAKEYSIDTATKDQGGDLGEFARGVMVPEFEQVAFSL 228

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
            +   + P  T  G   I   +   L     +K  + A     K  +   E    L   A
Sbjct: 229 KKGEISKPVKTDYGYHIIK-SEGATLKSFDEVKGDIEAYLLNDKKNQVITEKYDALEKAA 287

Query: 313 IIHYY 317
            I  +
Sbjct: 288 KIQKF 292


>gi|317046868|ref|YP_004114516.1| SurA domain-containing protein [Pantoea sp. At-9b]
 gi|316948485|gb|ADU67960.1| SurA domain protein [Pantoea sp. At-9b]
          Length = 431

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 95/279 (34%), Gaps = 18/279 (6%)

Query: 52  TDGDISKRIALLKLQK--------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            + D+   +  +K Q          +  L    ++  I++++  Q  EK+G+      ++
Sbjct: 38  LESDVDSMLRTVKAQAQQAHQQLPDDNTLRHQILERQIMDSIVLQMGEKAGLQISDQQLD 97

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
                 A    ++ +   S +   GI  N ++  +  + +  +V  N+   +   L  E+
Sbjct: 98  EAIQNIAGQNHMTLDQLRSRIAYDGINYNEYRAQIRKEMMISEVRNNEVRRRVTILPQEV 157

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLE 220
               +++ +   +   +      +P  +   Q  V  +   A +      +         
Sbjct: 158 DTLAKQIGSQNTQGTELNVSQILLPLPENPTQQQVDDQEALARQLVGELKKGADFGKLAV 217

Query: 221 KFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR--- 276
            +++    +  G   +    +L   F Q L    + +   P  +  G   + + D R   
Sbjct: 218 TYSADPQALKGGNMGWSKIEELPSLFSQALATAQKGDVVGPIRSGVGFHILKVNDLRGES 277

Query: 277 -DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            ++        ++  + +P   +      ++++   A I
Sbjct: 278 KNISVTEVHARHILLKPSPILTDDQARAKLEEI--AADI 314



 Score = 83.6 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 84/289 (29%), Gaps = 25/289 (8%)

Query: 47  NGEV-----ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           N EV     I   ++      +  Q   G    ++   L        E        D   
Sbjct: 143 NNEVRRRVTILPQEVDTLAKQIGSQNTQGTELNVSQILL-----PLPENPTQQQVDDQEA 197

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
           +    V   +      +   ++             +  I+ +     +            
Sbjct: 198 LARQLVGELKKGADFGKLAVTYSADPQALKGGNMGWSKIEELPSLFSQALATAQKGDVVG 257

Query: 152 -FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
                 G   +++   + + KNI+V E   R +L         +Q    K  + A + R 
Sbjct: 258 PIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPILTDDQA-RAKLEEIAADIRS 316

Query: 211 RLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVE 268
                    ++++         G   +       P F++  ++  +  T+ P  +  G  
Sbjct: 317 GKITFAAAAKQYSDDPGSANQGGDLGWTSPEVFDPAFRDALMRLQKGQTSQPVHSSFGWH 376

Query: 269 YIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            I + D R +   + A K          K  +    ++++ R++A +  
Sbjct: 377 LIQLLDTRQVDKTDAAQKERAYRLLFNRKFAEEAQTWMQEQRASAYVKI 425


>gi|261414929|ref|YP_003248612.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261371385|gb|ACX74130.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302327509|gb|ADL26710.1| peptidyl-prolyl cis-trans isomerase SurA [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 427

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/310 (11%), Positives = 91/310 (29%), Gaps = 19/310 (6%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK-----LQKINGELEKI 75
           +  +   + +  +    +   I   ++G+ I   +    +   +           + ++ 
Sbjct: 6   IASLVFALSVGCFAEPVLMEGIAAVVDGKPIMRSEFMNNLYRFQDTPEAASMTEQQQKEA 65

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +I E +    I++  I    N V+     H ++   S +   + L+K         
Sbjct: 66  VLNRMIEEKVLLSRIDRDSIVISENEVDQRVTSHLQSIAASQKIDMATLEKAVRAQLGLS 125

Query: 136 QYLAIQSIWPDV--------VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
                + +   +        V+   +      + E+    +  K+   R++    +    
Sbjct: 126 MIQYREQLGKQIRSHMEISRVRQLHVGTIHPTKKEVDVFYKDYKDSLPRQFNCVLLSHIQ 185

Query: 188 PDNKLQNQGFVQKRIKDA--EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ 245
              K  +      +       +S     K     ++ +        G   Y     L P 
Sbjct: 186 LPIKPDSMIVDSVKHVAEALIDSLNLGIKFELLAQRHSQDSTAAKGGDLGYFKRGLLDPA 245

Query: 246 FQNLLKKSQNNT--TNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAE 303
           F+  +++ +N    + P  T  G     +  +++ G   A    L       K       
Sbjct: 246 FEKAIERLKNGHYASTPVKTDLGWHIARVLGRKEDGVRSA--QILLRTIPTAKDSAAVLA 303

Query: 304 YVKKLRSNAI 313
               LR+N  
Sbjct: 304 LADSLRNNIK 313



 Score = 61.6 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 8/163 (4%), Positives = 40/163 (24%), Gaps = 3/163 (1%)

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
             ++ ++  +  ++            +L         +   +          + +     
Sbjct: 261 TPVKTDLGWHIARVLGRKEDGVRSAQILLRTIPTAKDSAAVLALADSLRNNIKSKDEFAK 320

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK 275
              +    K  +   G   +   +++       +   +    + P +         + D 
Sbjct: 321 AAKKFSEDKSSNFQGGLLGWFQRNEMEPAYVDPVANLNVGEISEPVMIDGAYHLFRLDDS 380

Query: 276 RDLGGEIALKA--YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           R +      +    +          +   + ++K R   ++  
Sbjct: 381 RQVRELTLEEDYGKIELMAATHLENEKLQKLIQKWRKEVLVEI 423


>gi|296101563|ref|YP_003611709.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295056022|gb|ADF60760.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 623

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/396 (11%), Positives = 105/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  + SY     ++     +NG+ I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSSYLIGGGANY-AAKVNGQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           A  + +                     L +  +  LI E L  Q  +K G+      V  
Sbjct: 60  AGERNRMQQQLGDQFSELAANEGYMKTLRQQTLNRLIDEALLDQYAKKLGLGISDEQVKK 119

Query: 105 FFVQ---HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF--------- 152
                     N       ++S +++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFSTQAFQSNGKFDNARYNSIVNQMGMTADQYAQALRNQLTTQQLINAVVGTDFMLKGE 179

Query: 153 ------------------------MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                     K    + E+ A  ++ KN  V     R     + 
Sbjct: 180 TDELAALVAQQRVVRQATIDVNALAAKQQVSDAEVNAWYEQNKNSFVAPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              LQ      +     ++                                +        
Sbjct: 240 AAALQETATDAEIQSYYDQHQDQFTQPQRNRYSVIQTKTEADAKAVLDELNKGADFATVA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           +  ++  I   + G   +L  +    + +N   K +   +    +  G     + D    
Sbjct: 300 KAKSTDIISAKNGGDMGWLEAATTPDELKNAGLKDKGQLSGVIKSSVGFLVARLDDIEAA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KTKPLAEVRDDIAAKVKQEKALDAYYALQQKVSDAA 395


>gi|152990310|ref|YP_001356032.1| peptidyl-prolyl cis-trans isomerase [Nitratiruptor sp. SB155-2]
 gi|151422171|dbj|BAF69675.1| peptidyl-prolyl cis-trans isomerase [Nitratiruptor sp. SB155-2]
          Length = 272

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/300 (13%), Positives = 99/300 (33%), Gaps = 40/300 (13%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL--KLQKINGELEKIAVQE 79
           ++   ++ +    + AM++++   +NG  IT  DI+  ++ +  + +++  ++++  + +
Sbjct: 4   IVATGLMAVSLIATQAMAAKVLAKVNGHAITTEDIAPMLSQIGARFEQLPPQMKQQVIDK 63

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
            I   L K++  KSG+                                          + 
Sbjct: 64  AIERELLKEKALKSGVEKSKEFK------------------------------EALAKIK 93

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
                   +K  +       + E  A  QK  +   R  L+      +   K       +
Sbjct: 94  RDLALQIWMKKKYDS-IKVTDKEAKAFYQKNIDKFKRPELVHARHILVKSEKEAQDIINE 152

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN--T 257
            +     + + +        +  +        G   +  +  +   F +     +    T
Sbjct: 153 LKKTPKNQLKQKF---IELAKTKSVGPSGKRGGDLGFFKKGQMVKPFSDAAFSLKPGTFT 209

Query: 258 TNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           T P  TQ G   I + +K+  G      +K  + AQ    K ++   +  +KL+ +A I 
Sbjct: 210 TKPVQTQFGYHIIYVEEKKPAGTIPFDQIKDRIKAQLKMKKFQEIVQKEAEKLKKSAKIQ 269


>gi|261210559|ref|ZP_05924852.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. RC341]
 gi|260840344|gb|EEX66915.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. RC341]
          Length = 619

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/403 (7%), Positives = 97/403 (24%), Gaps = 91/403 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + +Y   +  +     +    I+ GD  +  
Sbjct: 1   MMDRLREGVNSIAVKVILGLIILSFIFAGVGNYL-ISGGNNTAAKVGKAEISRGDFEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                       K  +  ++ + L +Q     G+      V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDQQVRQ 119

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN----------- 150
                 Q         E + + L + G   + F +YL    +   ++             
Sbjct: 120 MILEMPQFQSQGQFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMSALQGSEFSLPGE 179

Query: 151 ----------------------DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                 DF  K    + +I    +       R   ++     + 
Sbjct: 180 VNLQDQLISQTRDIRTITLSLADFAKKVTLSDDDIQQYYKANTERFTRPEQMKVSYVELS 239

Query: 189 DNKLQNQGFV---------------------------------QKRIKDAEESRLRLPKD 215
            + L+ Q  +                                 +++ +   +        
Sbjct: 240 ADALKKQIMIDDEAAQEYYQEHLDKYSTAEQRKVSHILVEGSDEQKAQAILDELNAGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               ++ +  +      G   ++    + P F+            +    ++ G   I +
Sbjct: 300 ATVAKEKSQDVGSAQEGGSLGWIERDTMDPAFEAAAFALTENGQISGLVKSEFGYHIIRL 359

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            + +   +     +   +  +    +          +L   A 
Sbjct: 360 DEVKAPVVKPYSEVVEAIKQELIDQQALDTFYAKQSELEKLAF 402


>gi|260866602|ref|YP_003233004.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O111:H- str.
           11128]
 gi|257762958|dbj|BAI34453.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O111:H- str.
           11128]
 gi|323178290|gb|EFZ63868.1| PPIC-type PPIASE domain protein [Escherichia coli 1180]
          Length = 623

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 104/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSLYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKVVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|157159968|ref|YP_001457286.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           HS]
 gi|312970538|ref|ZP_07784719.1| PPIC-type PPIASE domain protein [Escherichia coli 1827-70]
 gi|157065648|gb|ABV04903.1| peptidylprolyl isomerase [Escherichia coli HS]
 gi|310337187|gb|EFQ02325.1| PPIC-type PPIASE domain protein [Escherichia coli 1827-70]
          Length = 623

 Score = 97.8 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 104/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQKISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|171464151|ref|YP_001798264.1| SurA domain [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171193689|gb|ACB44650.1| SurA domain [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 482

 Score = 97.4 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 51/124 (41%), Gaps = 2/124 (1%)

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK- 252
           +Q   ++     ++ R R        +K++      + G   ++   DL P+F+  + + 
Sbjct: 346 DQDAERRLQGYRDQVRARTADFAELAKKYSEDGSAANGGDLGWMGPGDLVPEFEQAMNRL 405

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKHEAEYVKKLRSN 311
                +NP   + G   I + D+R+    +  +     A     K+++   E+V++L  N
Sbjct: 406 QIGEVSNPVKIEFGWHLIQVIDRREGQLTVEKQRQFARAAIRERKLDQAYQEWVRELHDN 465

Query: 312 AIIH 315
           A + 
Sbjct: 466 ATVK 469



 Score = 94.7 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 89/309 (28%), Gaps = 31/309 (10%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIV-----------SYKSWAMSSRIRTTINGEVITDGDIS 57
           ++ F K+      + +   V              S         +   +N   +T  +I 
Sbjct: 4   MNRFKKIRVHAIFIGLGLFVNASFAQDVAKTNAVSESKIRNIDGVAAVVNTGYVTRKEID 63

Query: 58  KRIALLKLQKIN----GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
            RIA LK Q       G L K  +  LI+E ++ Q  E+ GI   +  ++ +    A   
Sbjct: 64  DRIATLKKQGAKLPEDGTLRKAILDRLILEKIQLQNAEQEGIRVTNKELDKYIGDIAAKN 123

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN- 172
            LS  +  + ++  G     ++Q L    +     + +   K    + EI     +    
Sbjct: 124 KLSLAELKAKINAYGTSFERYRQMLRDNIMVSRYREREVEAKVKITDAEIDNFIIERTRG 183

Query: 173 -------------ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
                            E +    +F   D     Q   +K+                  
Sbjct: 184 AAPTGVQRSAPAAKGEPEEIDVAQIFIPVDAGAGVQVKAKKKADALLRDARGDVDFIQLG 243

Query: 220 EKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTT-NPYVTQKGVEYIAICDKRD 277
              A +   +   +  Y     L   F + +              +  G   + + D+R 
Sbjct: 244 AMAAKENPKIKFQELGYRTPDRLPQLFYEAVRNTGSGQVANAVVKSSAGYHVLKVLDRRA 303

Query: 278 LGGEIALKA 286
           +G     + 
Sbjct: 304 VGASPPPQQ 312


>gi|110804469|ref|YP_687989.1| peptidyl-prolyl cis-trans isomerase [Shigella flexneri 5 str. 8401]
 gi|110614017|gb|ABF02684.1| putative protease maturation protein [Shigella flexneri 5 str.
           8401]
          Length = 623

 Score = 97.4 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 104/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQIDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLV 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|46201262|ref|ZP_00208032.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 273

 Score = 97.4 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/286 (11%), Positives = 71/286 (24%), Gaps = 50/286 (17%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSG 94
               +  +   +NG  I    +    A    Q       +  ++  I   L  ++ ++  
Sbjct: 23  PAFAADTVVANVNGSDIKMSQL----AEFGRQMGPQAPYEAVLEVAINNQLVYEQAKRDK 78

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
           +  D                                       + IQ +   +++     
Sbjct: 79  LDADPEVKAAL------------------------------HRVEIQLMAQALMQKKVRG 108

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
                 ++   ++         E   R +L              ++  +       R   
Sbjct: 109 AITEEAVKARYDQAVKNFQPQEEVHARHIL-----------VETEESARSIIADLNRGQD 157

Query: 215 DCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTN-PYVTQKGVEYIA 271
                +  +         G   Y ++  + P+F  +         +  P  TQ G   I 
Sbjct: 158 FGELAKSRSKDTGSGAMGGDLGYFVQGAMVPEFSTVAFAMRPGEVSKTPVKTQFGYHVIK 217

Query: 272 ICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           + DKR     I               ++ + + V  LR  A I  +
Sbjct: 218 VEDKRMAT--IPPYDQAKPVIARQIADELQEKMVVDLRDKAKIKRF 261


>gi|209545159|ref|YP_002277388.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532836|gb|ACI52773.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 452

 Score = 97.4 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 80/252 (31%), Gaps = 9/252 (3%)

Query: 33  YKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI-------NGELEKIAVQELIVETL 85
                    I   I+G ++T  D+  R  L  L             L    +++LI E L
Sbjct: 48  QSDATSQDAIIAIIDGTLLTRRDVDNRGRLFALSAGLTLSDDVMARLRPQILRQLIDERL 107

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
           ++ E+    I    + +        R  G+        L + GI        + +Q  W 
Sbjct: 108 RQNEMLSRHINVSPDQIAASIADIERRNGMPKNALRDRLAQDGISLTTMIDQIRVQLGWS 167

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
            V++ +   +      EI   ++ +++   +   + + +F   D+   ++  + K  +  
Sbjct: 168 QVLREEMGTRGRITAAEISQREEALRHEDGKPQYLISEIFIPVDDPRHSEDEL-KFTQTI 226

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQ 264
            +             +F+     +  G   ++ E  L     +          +NP    
Sbjct: 227 IQELRNGAPFPIVAAQFSQNQAALEGGLMGWVQEDSLDPQVVEIAKAMPPGAISNPIRVA 286

Query: 265 KGVEYIAICDKR 276
            G     +  +R
Sbjct: 287 GGYVIATLNGRR 298



 Score = 51.6 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 81/277 (29%), Gaps = 21/277 (7%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           IT  +IS+R   L+ +    +        LI E     +  +     D        +Q  
Sbjct: 180 ITAAEISQREEALRHEDGKPQY-------LISEIFIPVDDPRHSE--DELKFTQTIIQEL 230

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK--NDFMLKYGNLEMEIPANKQ 168
           RN        + F   Q   +     ++   S+ P VV+          +  + +     
Sbjct: 231 RNGAPFPIVAAQFSQNQAALEGGLMGWVQEDSLDPQVVEIAKAMPPGAISNPIRVAGGYV 290

Query: 169 KMKNITVREYLIRT---------VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
                  R    +           +        Q     Q+      +        C +L
Sbjct: 291 IATLNGRRVIGHQMGTLVSLREAFIPFTTPLDPQAPSEQQRDALKQAQQISTTVHSCPEL 350

Query: 220 EKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL 278
           E    K  D        +    ++ Q Q +L   +    ++P V   G+  + +C ++  
Sbjct: 351 EAINHKFGDKHPSNPGDVQLERVNEQMQKVLTGLTPGQASHPLVAPDGIAVLMVCSRQQK 410

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                  + ++ Q    + E+   +  + L   AII 
Sbjct: 411 NFAQQTPSDIADQLMNERAEQTSRQLDRDLHRRAIIE 447


>gi|162149098|ref|YP_001603559.1| peptidyl-prolyl cis-trans isomerase SurA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787675|emb|CAP57271.1| Peptidyl-prolyl cis-trans isomerase SurA [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 459

 Score = 97.4 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 80/252 (31%), Gaps = 9/252 (3%)

Query: 33  YKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI-------NGELEKIAVQELIVETL 85
                    I   I+G ++T  D+  R  L  L             L    +++LI E L
Sbjct: 55  QSDATSQDAIIAIIDGTLLTRRDVDNRGRLFALSAGLTLSDDVMARLRPQILRQLIDERL 114

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
           ++ E+    I    + +        R  G+        L + GI        + +Q  W 
Sbjct: 115 RQNEMLSRHINVSPDQIAASIADIERRNGMPKNALRDRLAQDGISLTTMIDQIRVQLGWS 174

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
            V++ +   +      EI   ++ +++   +   + + +F   D+   ++  + K  +  
Sbjct: 175 QVLREEMGTRGRITAAEISQREEALRHEDGKPQYLISEIFIPVDDPRHSEDEL-KFTQTI 233

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQ 264
            +             +F+     +  G   ++ E  L     +          +NP    
Sbjct: 234 IQELRNGAPFPIVAAQFSQNQAALEGGLMGWVQEDSLDPQVVEIAKAMPPGAISNPIRVA 293

Query: 265 KGVEYIAICDKR 276
            G     +  +R
Sbjct: 294 GGYVIATLNGRR 305



 Score = 51.6 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 81/277 (29%), Gaps = 21/277 (7%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           IT  +IS+R   L+ +    +        LI E     +  +     D        +Q  
Sbjct: 187 ITAAEISQREEALRHEDGKPQY-------LISEIFIPVDDPRHSE--DELKFTQTIIQEL 237

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK--NDFMLKYGNLEMEIPANKQ 168
           RN        + F   Q   +     ++   S+ P VV+          +  + +     
Sbjct: 238 RNGAPFPIVAAQFSQNQAALEGGLMGWVQEDSLDPQVVEIAKAMPPGAISNPIRVAGGYV 297

Query: 169 KMKNITVREYLIRT---------VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
                  R    +           +        Q     Q+      +        C +L
Sbjct: 298 IATLNGRRVIGHQMGTLVSLREAFIPFTTPLDPQAPSEQQRDALKQAQQISTTVHSCPEL 357

Query: 220 EKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL 278
           E    K  D        +    ++ Q Q +L   +    ++P V   G+  + +C ++  
Sbjct: 358 EAINHKFGDKHPSNPGDVQLERVNEQMQKVLTGLTPGQASHPLVAPDGIAVLMVCSRQQK 417

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                  + ++ Q    + E+   +  + L   AII 
Sbjct: 418 NFAQQTPSDIADQLMNERAEQTSRQLDRDLHRRAIIE 454


>gi|308185912|ref|YP_003930043.1| peptidyl-prolyl cis-trans isomerase D [Pantoea vagans C9-1]
 gi|308056422|gb|ADO08594.1| peptidyl-prolyl cis-trans isomerase D [Pantoea vagans C9-1]
          Length = 622

 Score = 97.4 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/396 (9%), Positives = 103/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + +  +  +    +++ F +  + +Y     +      +NG+ I+ G + +  
Sbjct: 1   MMDNLRAASNHVVLKIILGLIIVSFVLTGVGNYLIGGNNDY-AAKVNGQEISRGQLEQAF 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + ++                   ++ + A+ +LI + L    I++  ++   + V  
Sbjct: 60  NSERSRQQQMLGDQFSQLASNDGFMQQMRQQALSQLIDQALLDSYIKELHLSISDDQVKQ 119

Query: 105 FFVQHARNTGLSAEDFSSFLD---KQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
                         D + +L      G   + + + L  Q     ++             
Sbjct: 120 AIFNQQAFQTNGKFDNAKYLALIGNMGFSADQYAEALRKQLSNQQLINAVANTDFTLKGE 179

Query: 152 -----------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                   M K    + EI    Q+ K   +     R     + 
Sbjct: 180 ASKLVDLVSQQRDIRQATLDVNALMAKQTVTDDEISQYYQQHKTSFMAPEQFRVSYILMD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                      +  
Sbjct: 240 AASMQQDASEADIQAWYDQHKADYSQPQRNRYSVIQTKTEADANAVLAQLKGGANFADVA 299

Query: 220 EKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           +  +         G   +L  S    + +N     +   +    +  G   + + D +  
Sbjct: 300 KAKSIDPISARKGGDMGWLEPSTTPDELKNAGLTEKGQMSGVIKSSVGFLVVRLDDIQPE 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    +++ ++A+    K      +  +K+   A
Sbjct: 360 QVKPLDEVRSAVAAKVKQEKGVDAFYKLQQKVSEAA 395


>gi|323495052|ref|ZP_08100141.1| peptidyl-prolyl cis-trans isomerase D [Vibrio brasiliensis LMG
           20546]
 gi|323310709|gb|EGA63884.1| peptidyl-prolyl cis-trans isomerase D [Vibrio brasiliensis LMG
           20546]
          Length = 619

 Score = 97.4 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/406 (10%), Positives = 100/406 (24%), Gaps = 92/406 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + SY     ++     +    I  G+  +  
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVGGSNNS-AAKVGNVEIGRGEFEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                       K  +  ++ + L +Q  E  G+    + V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPSYVESFRKSVLDRMVNDLLLEQHAESLGLRVSDSQVRT 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
             ++  +         E + + L + G     F +YL    +   ++             
Sbjct: 120 LILEMPQFQVDGKFDQEIYQTALRRAGFSAESFAEYLRRDLVRNQLMTAIQGSDFALPGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL---- 184
                                 DF  K    E EI    Q+      R   ++       
Sbjct: 180 VEAQSKLLTQTRDIKKVTLSLADFAAKAELSEQEISDYYQQNPERYTRPEQVKVAYVELS 239

Query: 185 -FSIPDNKLQNQGFVQKRIKDAEES----------------------------RLRLPKD 215
              + +N   +    +K  ++  +                                    
Sbjct: 240 AQQLKENIEISDEQAEKYYQEHIDKYSSEEQRRVSHILIEGDDQAKAQAILDELNAGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               E+ +         G   ++    + P F+           TT    +  G   I +
Sbjct: 300 ATLAEEKSDDFGSASEGGSLGWIERDVMDPSFEEAAFALTKVGETTGLVKSDFGYHIIKL 359

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + +D        + A +  +    +      E   +L   A   Y
Sbjct: 360 DELKDSVAKPYQEVAAEIKQELKDQQAIDQYYELQSELEKVAF-EY 404


>gi|295700292|ref|YP_003608185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1002]
 gi|295439505|gb|ADG18674.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1002]
          Length = 265

 Score = 97.4 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/296 (11%), Positives = 78/296 (26%), Gaps = 36/296 (12%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ--KINGELEKIAVQELI 81
           +  ++      + + + +   T+NG+ ++  D    I     Q    + +L      ELI
Sbjct: 2   LALVIGATLSLATSATEKPFVTVNGKPVSQADADLYIGQAHAQGFSDSPQLTDHVRDELI 61

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
              +  Q+ +K+G   +            +    +   +                     
Sbjct: 62  RREVLFQQAQKTGFDRNPEVAARAEAARQKILAQAQATWEIE------------------ 103

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
            I    +++       + +                +Y +R +L                 
Sbjct: 104 -IVRAYMQDFLKKNPVSDDQLKAMYNDMKAKGGSTQYKVRHILVKDQGEAK--------- 153

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTN- 259
             D      +     +  ++        + G   ++  S +   F + +        T  
Sbjct: 154 --DIIAKLNKGASFGDLAKESIDADTRYNGGDLGWITSSKVVKPFADAVSHLHKGEYTRM 211

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           P  T  G   I + D R L         +          +     VK LR+ A I 
Sbjct: 212 PVKTGYGFHVIEVDDTRPLQV--PSFEDMKPMLYQQAQAELVDRMVKNLRAKATIQ 265


>gi|254240198|ref|ZP_04933520.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa 2192]
 gi|126193576|gb|EAZ57639.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa 2192]
          Length = 621

 Score = 97.4 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/402 (11%), Positives = 112/402 (27%), Gaps = 89/402 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++++  +    +       S +   +NG+ I+  ++ + +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60

Query: 61  ALLKLQ-------------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF- 106
            + + Q               +  L++ A++ LI  TL  Q  +     F    ++    
Sbjct: 61  DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120

Query: 107 --VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF------------ 152
              +   +   +A+ F   + +       F+Q L  + +   +                 
Sbjct: 121 QTPEFQVDGKFNADRFDQVIRQMNYSRMQFRQMLGQEMLIGQLRAGLAGTGFVTDNELQS 180

Query: 153 ---------------------MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                                     + E++      K + +T  + ++  V        
Sbjct: 181 FARLEKQTRDFATLAIKADASKSSVSDDEVKAFYEGHKSEFMTPEQVVVEYVELKKSSFF 240

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKL-------------------------------- 219
            Q +   +      ++    L +  +                                  
Sbjct: 241 DQVKVKQEDLEALYQKEIANLSEQRDAAHILIEVNDKVGDEQAKAKIDEIKARLAKGEDF 300

Query: 220 ----EKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAIC 273
               ++F+  I    + G   Y       P F+       Q   + P  T  G   I + 
Sbjct: 301 AALAKEFSQDIGSAATGGDLGYAGRGVYDPAFEEALYALKQGEVSAPVKTPYGYHLIKLL 360

Query: 274 DKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             +  ++    +LK  L  +     +E+   E  K L S+A 
Sbjct: 361 GVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLESSAY 402


>gi|170681699|ref|YP_001742585.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           SMS-3-5]
 gi|218698647|ref|YP_002406276.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli IAI39]
 gi|300937058|ref|ZP_07151924.1| PPIC-type PPIASE domain protein [Escherichia coli MS 21-1]
 gi|301022565|ref|ZP_07186437.1| PPIC-type PPIASE domain protein [Escherichia coli MS 69-1]
 gi|170519417|gb|ACB17595.1| peptidylprolyl isomerase [Escherichia coli SMS-3-5]
 gi|218368633|emb|CAR16372.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           IAI39]
 gi|284920251|emb|CBG33310.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli 042]
 gi|300397446|gb|EFJ80984.1| PPIC-type PPIASE domain protein [Escherichia coli MS 69-1]
 gi|300457889|gb|EFK21382.1| PPIC-type PPIASE domain protein [Escherichia coli MS 21-1]
 gi|323170528|gb|EFZ56178.1| PPIC-type PPIASE domain protein [Escherichia coli LT-68]
 gi|323965128|gb|EGB60587.1| ppic-type ppiase domain-containing protein [Escherichia coli M863]
 gi|327254769|gb|EGE66385.1| PPIC-type PPIASE domain protein [Escherichia coli STEC_7v]
          Length = 623

 Score = 97.4 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 104/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDVAAKVKHEKALDAYYALQQKVSDAA 395


>gi|317401961|gb|EFV82563.1| parvulin-type peptidyl-prolyl cis-trans isomerase [Achromobacter
           xylosoxidans C54]
          Length = 258

 Score = 97.4 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/305 (16%), Positives = 98/305 (32%), Gaps = 52/305 (17%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ--KINGELE 73
           +    +L   C++ + ++           T+NG+ I    + + + LL  Q    + +L 
Sbjct: 1   MKRIVMLAAACVIAVPAFAQN------VATVNGKAIPQKSLDQFVKLLVSQGATDSPQLR 54

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           +   QE+I   +  Q  E  GI   ++                                 
Sbjct: 55  EQVKQEMINRQVFVQAAEAGGIAKQADVQTEI---------------------------- 86

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
               LA Q I    +  D++ K+   + ++ A  +K+K     +   +     + D K  
Sbjct: 87  ---ELARQGILVRALMADYLAKHPVSDAKVTAEYEKIKKEQAGKMEYKVRHILVEDEKTA 143

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK 252
           N    Q +            K  +  +K +         G   +   ++    F   + +
Sbjct: 144 NDLLAQLKSNK--------GKFDDLAKKNSKDPGSAEKGGDLGWAPPTNYVQPFAQAVTQ 195

Query: 253 SQNN--TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
            +       P  TQ G   I + D R +  E      +  Q      ++  A+Y K+LR 
Sbjct: 196 LKKGQLVDKPVQTQFGWHIIMVDDTRPV--EFPPLDQVRTQLEEMLRQQTLADYQKELRE 253

Query: 311 NAIIH 315
            A I 
Sbjct: 254 KAKIQ 258


>gi|300820313|ref|ZP_07100465.1| PPIC-type PPIASE domain protein [Escherichia coli MS 119-7]
 gi|331666797|ref|ZP_08367671.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli TA271]
 gi|331676113|ref|ZP_08376825.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli H591]
 gi|300527098|gb|EFK48167.1| PPIC-type PPIASE domain protein [Escherichia coli MS 119-7]
 gi|331066021|gb|EGI37905.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli TA271]
 gi|331076171|gb|EGI47453.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Escherichia coli H591]
          Length = 623

 Score = 97.4 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 104/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDVAAKVKHEKALDAYYALQQKVSDAA 395


>gi|169796158|ref|YP_001713951.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii AYE]
 gi|260555208|ref|ZP_05827429.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii ATCC
           19606]
 gi|169149085|emb|CAM86962.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii AYE]
 gi|260411750|gb|EEX05047.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii ATCC
           19606]
          Length = 441

 Score = 97.4 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/314 (13%), Positives = 104/314 (33%), Gaps = 20/314 (6%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAM-SSRIRTTINGEVITDGDISKRIA----LLKLQK- 67
           K L  +F      ++   S  S+A  +  +   ++  VI   D+ + +A     L+ QK 
Sbjct: 9   KHLKQFFKATTLAVLISSSMHSFAQPTDEVVAIVDNSVILKSDLEQGMAEAAHELQAQKK 68

Query: 68  ---INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS--AEDFSS 122
                  L+   + +LI+   + ++++K GI  D  ++N   ++ A  +G          
Sbjct: 69  EVPPQQYLQFQVLDQLILRQAQLEQVKKYGIKPDEKSLNEAVLKVASQSGSKSLEAFQQK 128

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
                     + +  +A       + +   M +    + ++    +  +           
Sbjct: 129 LDAIAPGTYENLRSRIAEDLAINRLRQQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHV 188

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
           +   I  +  Q    V K ++        L    N L+K ++    V      +   SD+
Sbjct: 189 IHMRISGDNPQEVQNVAKEVRSQLAQSNDL----NALKKLSTATVKVEGADMGFRPLSDI 244

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD----LGGEIALKAYLSAQNTPTKI 297
             +    +       TT+    + GV  + + +++              ++  Q +    
Sbjct: 245 PAELAARITPLQDGQTTDLISVRDGVHVLKLLERKQNEQKALVPQYQTRHILIQPSEVVS 304

Query: 298 EKHEAEYVKKLRSN 311
            ++  + +  +   
Sbjct: 305 PENAKQIIDSIYKR 318



 Score = 88.2 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 17/157 (10%), Positives = 52/157 (33%), Gaps = 3/157 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +   ++K           +T    I  +++ +    ++ I    +              +
Sbjct: 273 LKLLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLKAGEDFATLAATY 332

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           ++        G   ++    + P+F + + +      + P+ TQ G   + + DKR+   
Sbjct: 333 SNDTGSARDGGSLGWVTPGMMVPEFDKKMQEIPVGEISEPFQTQFGWHILQVTDKREKDM 392

Query: 281 E-IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                +          +       +++++R+NA +  
Sbjct: 393 THEYQERMARQILGERQFNTEIDSWLREVRANAYVEI 429


>gi|15597002|ref|NP_250496.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa PAO1]
 gi|107101237|ref|ZP_01365155.1| hypothetical protein PaerPA_01002270 [Pseudomonas aeruginosa PACS2]
 gi|9947788|gb|AAG05194.1|AE004606_8 peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa PAO1]
          Length = 621

 Score = 97.4 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/402 (11%), Positives = 112/402 (27%), Gaps = 89/402 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++++  +    +       S +   +NG+ I+  ++ + +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60

Query: 61  ALLKLQ-------------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF- 106
            + + Q               +  L++ A++ LI  TL  Q  +     F    ++    
Sbjct: 61  DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120

Query: 107 --VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF------------ 152
              +   +   +A+ F   + +       F+Q L  + +   +                 
Sbjct: 121 QTPEFQVDGKFNADRFDQVIRQMNYSRMQFRQMLGQEMLIGQLRAGLAGTGFVTDNELQS 180

Query: 153 ---------------------MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                                     + E++      K + +T  + ++  V        
Sbjct: 181 FARLEKQTRDFATLAIKADASKSSVSDDEVKAFYEGHKSEFMTPEQVVVEYVELKKSSFF 240

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKL-------------------------------- 219
            Q +   +      ++    L +  +                                  
Sbjct: 241 DQVKVKQEDLEALYQKEIANLSEQRDAAHILIEVNDKVGDEQAKAKIDEIKARLAKGEDF 300

Query: 220 ----EKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAIC 273
               ++F+  I    + G   Y       P F+       Q   + P  T  G   I + 
Sbjct: 301 AALAKEFSQDIGSAATGGDLGYAGRGVYDPAFEEALYALKQGEVSAPVKTPYGYHLIKLL 360

Query: 274 DKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             +  ++    +LK  L  +     +E+   E  K L S+A 
Sbjct: 361 GVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLESSAY 402


>gi|323137132|ref|ZP_08072211.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocystis sp.
           ATCC 49242]
 gi|322397490|gb|EFY00013.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocystis sp.
           ATCC 49242]
          Length = 297

 Score = 97.4 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 85/280 (30%), Gaps = 49/280 (17%)

Query: 41  RIRTTINGEVITDGDISKRIALL----KLQKINGELEKIAVQELIVETLKKQEIEKSGIT 96
           ++   +NG  ITD D+   +  L      Q      +   +  L+ E L  Q+ +   + 
Sbjct: 34  KVLAKVNGVEITDDDLKLAMEDLGPGIPRQLEGKARDAYVLDFLVDEQLVVQKAQADKLA 93

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
                                                   YL  +++   ++ N      
Sbjct: 94  ETPEFAKKL------------------------------AYLRDKALMETLLGNVAKQAA 123

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
               ++   ++         EY    +L    ++  +               R++  +D 
Sbjct: 124 TEAAIKQTYDEAAKNQKPETEYHAHHILVGSEEDAKKALA------------RVKGGEDF 171

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK 275
            K+    SK      G   +  +  + P+F +   K      ++P  TQ G   I + +K
Sbjct: 172 AKVVAEVSKDSGPKNGDLGWFTKDRMVPEFADAAAKLEPGQISDPVKTQFGWHIIKLDEK 231

Query: 276 RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           R           +  Q     ++K +++ V KLR  A I 
Sbjct: 232 RPKAF--PPLDQVKDQVARYVVQKAQSDLVVKLREAAKIE 269


>gi|88704591|ref|ZP_01102304.1| Chaperone surA [Congregibacter litoralis KT71]
 gi|88700912|gb|EAQ98018.1| Chaperone surA [Congregibacter litoralis KT71]
          Length = 400

 Score = 97.4 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 98/263 (37%), Gaps = 7/263 (2%)

Query: 56  ISKRIALLKLQKINGE-LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
           +++ IA    +    + L +  +  LI+E ++ Q  ++ G+      +N    + A   G
Sbjct: 26  VNQNIAAQGAEAPPEDVLIRETLDRLILENIQIQMGQRFGVRISDAQLNQAMGRIAAQNG 85

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
           L+ E F+  L+++G      ++ +  + I   V + +        + EI       +   
Sbjct: 86  LTQEQFAVLLEQEGRSYMEIRENIEREMIIQRVQQGNVNQLIEISDQEIENYLSTEEGQK 145

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH--DVSIG 232
           + +   R +   +P +   +   ++K    +E    R+    +      S       + G
Sbjct: 146 LVQPEYRIIHALLPISSDTSDAEIEKNRTFSEGLVERIRDGESFEAVMTSVPQEYAFTGG 205

Query: 233 KAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYL 288
              +   +DL   FQ +    S+  T + + +  G+  + + D+R   D+        ++
Sbjct: 206 DLGWRKLADLPSLFQEVAPTLSRGETADVFQSPSGLHIVTMADQRGGGDMTINQTKVRHI 265

Query: 289 SAQNTPTKIEKHEAEYVKKLRSN 311
             + +    +    +   +LR  
Sbjct: 266 LIEPSEILTDDQARDLAAELRER 288



 Score = 90.1 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 17/141 (12%), Positives = 49/141 (34%), Gaps = 3/141 (2%)

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYL 237
             +     I  +++      +    +  E         +   +++  I      G   + 
Sbjct: 259 QTKVRHILIEPSEILTDDQARDLAAELRERVEAGEDFGDLAREYSEDIGSAAEGGDLGWT 318

Query: 238 LESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPT 295
               + P+F+N++        + P  +Q G   + + ++R+      + KA +       
Sbjct: 319 SPGQMVPEFENMMASTEVGVVSPPVRSQFGWHILEVLERREKDITEDMRKAQVREFLHGR 378

Query: 296 KIEKHEAEYVKKLRSNAIIHY 316
           K ++    +++K+R  A +  
Sbjct: 379 KYQEELDAWLRKIRDEAFVDI 399


>gi|124267144|ref|YP_001021148.1| putative peptidyl-prolyl cis-trans isomerase transmembrane protein
           [Methylibium petroleiphilum PM1]
 gi|124259919|gb|ABM94913.1| putative peptidyl-prolyl cis-trans isomerase transmembrane protein
           [Methylibium petroleiphilum PM1]
          Length = 640

 Score = 97.4 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/401 (11%), Positives = 102/401 (25%), Gaps = 99/401 (24%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDIS--- 57
           M   V +     ++ +    V   F    +  Y   +  + +   + G  IT  +     
Sbjct: 1   MFEFVRSHTR-LLQFILVLLVFPAFVFFGVQGYTGMSEGNAVVAKVAGTSITQAEWDAAH 59

Query: 58  -KRIALLKLQKI--------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF-- 106
             ++  L+ Q            E ++  +  L+ E +     +K  +T     +   F  
Sbjct: 60  RNQVERLRAQSPGVDLKLFDTPEAKQRTLDALVRERVMLVAADKLHLTASDERLQRVFAS 119

Query: 107 -VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK---------------- 149
             Q A          +  L  QG+    F+Q L        V++                
Sbjct: 120 DPQLAFLRKPDGSLNADVLAAQGMSARQFEQQLRQDLAMRQVLQGVSGTVLAPSRPTSTA 179

Query: 150 -----------------NDFMLKYGNLEMEIPANKQKMKN-------------------- 172
                              F+ K    + +I A  +  ++                    
Sbjct: 180 LDALLQQREVRIARFEAQKFVTKVNVTDADIEAYYKDGRHAAEFETPEQASIEYLVLDLD 239

Query: 173 -----------ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL--------- 212
                         + Y      +  P+ +  +   ++     + E R +          
Sbjct: 240 AIKSGLTVSDDDLRKYYAENESRYVAPEERRASHILIKAEKGASAEQREKARTKAATLLA 299

Query: 213 ------PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQ 264
                  K     +K +      V  G   +     +   F++          +    + 
Sbjct: 300 EARKDPAKFAELAKKNSEDPGSAVQGGDLDFFARGAMVKPFEDAAFALKPGQLSEVVESD 359

Query: 265 KGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAE 303
            G   I +   R  +     ++KA +  +      ++  AE
Sbjct: 360 FGYHVILLTAVRGGEKKAFESVKAEIENEVKQQLAQRRYAE 400


>gi|297545519|ref|YP_003677821.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296843294|gb|ADH61810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 301

 Score = 97.4 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/305 (11%), Positives = 89/305 (29%), Gaps = 16/305 (5%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ-KINGELEK 74
           +     LI+     +    S +    +  T+NGE IT+ +  K    +K Q + + +  K
Sbjct: 1   MKRKIALILSFGFIVFLLVSCSAKKEVVATVNGENITNAEYRKAFDQVKAQIESSPQYTK 60

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
               +          ++++ +                N  +S ++      ++   +   
Sbjct: 61  DIWNQDYEGKKFLDVVKENVLDSLIAQKLLLQEALKNNITVSDKEIEEEYQREKEFNKDI 120

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
            +      +  + +  ++       E E+    +  K+          ++          
Sbjct: 121 TKEDVKNYLLINKLFEEYTKDVKITEEELKKYYEDNKDQFETVKASHILVSD-------- 172

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK- 252
               +K  +D     ++        ++++         G         + P+F+ +    
Sbjct: 173 ----EKIAQDIYNRLMKGEDFATLAKEYSIDTATKDQGGDLGEFARGVMVPEFEQVAFSL 228

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
            +   + P  T  G   I   +   L     +K  + A     K  +   E    L   A
Sbjct: 229 KKGQISKPVKTDYGYHIIK-SEGATLKSFDEVKGDIEAYLLNDKKNQVITEKYDALEKAA 287

Query: 313 IIHYY 317
            I  +
Sbjct: 288 KIQKF 292


>gi|330883238|gb|EGH17387.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 192

 Score = 97.4 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 16/149 (10%), Positives = 53/149 (35%), Gaps = 3/149 (2%)

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDV 229
           +        +      I  ++++N+   ++  +   +            + F+      +
Sbjct: 34  QGQAQMRDEVHVRHILIKPSEIRNEEETKRLAEKIYDRIQNGEDFAELAKSFSEDPGSAL 93

Query: 230 SIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAY 287
           + G   ++  + L P+F+  + +  Q   + P+ T  G   + +  +R     + A +  
Sbjct: 94  NGGDLNWVDPNSLVPEFRQVMNETPQGELSKPFKTAYGWHVLEVLGRRSTDATDQAREQQ 153

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                   K ++    +++++R  A +  
Sbjct: 154 ALNVLRNRKYDEELQTWLRQIRDEAYVEI 182



 Score = 44.7 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 22/67 (32%), Gaps = 5/67 (7%)

Query: 252 KSQNNTTNPYVTQKGVEYIAICDKRDLGG-----EIALKAYLSAQNTPTKIEKHEAEYVK 306
               + T P  T  G   + + +KR   G     +     ++  + +  + E+      +
Sbjct: 7   MPVGDVTPPARTPGGFIILKLLEKRGGQGQAQMRDEVHVRHILIKPSEIRNEEETKRLAE 66

Query: 307 KLRSNAI 313
           K+     
Sbjct: 67  KIYDRIQ 73


>gi|254476481|ref|ZP_05089867.1| ppic-type ppiase domain protein [Ruegeria sp. R11]
 gi|214030724|gb|EEB71559.1| ppic-type ppiase domain protein [Ruegeria sp. R11]
          Length = 421

 Score = 97.4 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 6/254 (2%)

Query: 31  VSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEI 90
            +  S         T+N  V+T+ ++ +R   L L +  G+  + A ++LI + LK + +
Sbjct: 36  PAVGSAQGLFSPAVTVNDSVVTNYELQQRARFLALLREPGDPLEKAREDLIEDRLKLEVL 95

Query: 91  EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
            ++GI      V     + A    LS ++F + L + G+     + +  +   W   V +
Sbjct: 96  AQAGIDPTDEEVTAGMTELAGRANLSLQEFLNVLRENGVDPQTLRDFSRVGIAWRGYVGS 155

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
            ++ +    E EI        +  V   L   ++     N  Q +   Q+          
Sbjct: 156 RYIGQARPSEEEIDRAMGLSGSGGVEVLLSELIMPINAQNAPQVEEVAQQ-----VAQMN 210

Query: 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEY 269
                     +F++     + G+  ++  ++L PQ Q ++ + S    T P      V  
Sbjct: 211 TTAAFSQAATQFSAARTRENGGRLPWMPLTNLPPQLQQVVLELSPGEVTAPIPLDNAVAL 270

Query: 270 IAICDKRDLGGEIA 283
             + D R+  G   
Sbjct: 271 FQMRDLRESAGSAP 284



 Score = 37.7 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/81 (12%), Positives = 28/81 (34%), Gaps = 3/81 (3%)

Query: 239 ESDLHPQFQNL-LKKSQNNTTNPYVTQKG--VEYIAICDKRDLGGEIALKAYLSAQNTPT 295
            S++         K     T+       G  +  + +C +       A +  ++   T  
Sbjct: 340 PSEIPQDIAIELAKLDPGETSTALTRNNGQTLVVLMMCGRTAEVNAEASREAVANALTQQ 399

Query: 296 KIEKHEAEYVKKLRSNAIIHY 316
           ++       +++L+++A I  
Sbjct: 400 RLGAFADSLLEQLKADARIDI 420


>gi|212696153|ref|ZP_03304281.1| hypothetical protein ANHYDRO_00689 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676782|gb|EEB36389.1| hypothetical protein ANHYDRO_00689 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 345

 Score = 97.4 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/323 (12%), Positives = 98/323 (30%), Gaps = 42/323 (13%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSR-------------------IRTTINGEVITDG 54
           K +    +   F      +  +   + +                       + GE I+  
Sbjct: 3   KKIIALVLATSFLFSACANDNAKDKNDKGSNETQTSESAKKEDLPKDAVAVVGGEKISKE 62

Query: 55  DISKRIALLKL-QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
                ++          +L+   VQ LI + L   +++K+ +  D   +N  F+Q+ +  
Sbjct: 63  SYKDEMSFYSAMLASQQQLKPSIVQMLIQDKLIADDMKKNDVKVDDKELNDKFLQYIQQF 122

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
           G   +      D     D   +     Q       +  F  K    + +I     + K+ 
Sbjct: 123 GGQEKFDKMLEDYNMSSDKFKETIKKDQIYQKH--REWFEKKNPVSDKDIKKYYDEHKDT 180

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIG 232
             +      ++              +   K+ ++            ++++    +    G
Sbjct: 181 LSQVKASHILV------------EDENTAKEVKKKLDDGEDFAKLAKEYSKDTANSAKGG 228

Query: 233 KAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ 291
              Y  +  +  +F +      +   ++P  T  G   I + DK+D          L  +
Sbjct: 229 DLGYFTKDKMVKEFADKAFAMKKGEISDPVKTSYGYHIIKVEDKKDNP------DALKEE 282

Query: 292 NTPTKIEKHEAEYVKKLRSNAII 314
            +    +K  A+Y+  L + A +
Sbjct: 283 ISKALNDKKYADYLTDLFNKANV 305


>gi|116049755|ref|YP_791438.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|313110502|ref|ZP_07796387.1| putative peptidyl-prolyl cis-trans isomerase D [Pseudomonas
           aeruginosa 39016]
 gi|115584976|gb|ABJ10991.1| putative peptidyl-prolyl cis-trans isomerase D [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|310882889|gb|EFQ41483.1| putative peptidyl-prolyl cis-trans isomerase D [Pseudomonas
           aeruginosa 39016]
          Length = 621

 Score = 97.1 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/402 (11%), Positives = 111/402 (27%), Gaps = 89/402 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++++  +    +       S +   +NG+ I+  ++ + +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60

Query: 61  ALLKLQ-------------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF- 106
            + + Q               +  L++ A++ LI  TL  Q  +     F    ++    
Sbjct: 61  DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120

Query: 107 --VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF------------ 152
              +   +   +A+ F   + +       F+Q L  + +   +                 
Sbjct: 121 QTPEFQVDGKFNADRFDQVIRQMNYSRMQFRQMLGQEMLIGQLRAGLAGTGFVTDNELQS 180

Query: 153 ---------------------MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                                       E++      K + +T  + ++  V        
Sbjct: 181 FARLEKQTRDFATLAIKADASKSSVSEDEVKAFYEGHKSEFMTPEQVVVEYVELKKSSFF 240

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKL-------------------------------- 219
            Q +   +      ++    L +  +                                  
Sbjct: 241 DQVKVKQEDLEALYQKEIANLSEQRDAAHILIEVNDKVGDEQAKAKIDEIKARLAKGEDF 300

Query: 220 ----EKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAIC 273
               ++F+  I    + G   Y       P F+       Q   + P  T  G   I + 
Sbjct: 301 AALAKEFSQDIGSAATGGDLGYAGRGVYDPAFEEALYALKQGEVSAPVKTPYGYHLIKLL 360

Query: 274 DKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             +  ++    +LK  L  +     +E+   E  K L S+A 
Sbjct: 361 GVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLESSAY 402


>gi|149181601|ref|ZP_01860095.1| post-translocation molecular chaperone [Bacillus sp. SG-1]
 gi|148850715|gb|EDL64871.1| post-translocation molecular chaperone [Bacillus sp. SG-1]
          Length = 313

 Score = 97.1 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/294 (8%), Positives = 86/294 (29%), Gaps = 26/294 (8%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    ++    +V ++          +   +  + I+  ++   +          +  + 
Sbjct: 29  IKLLTLIGSVVVVCLIITGFVFSKDEVVAKVGKDSISKDELYTMLV--------DQYGEA 80

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           A+  LI + + + E ++  I      +     +   + G       +             
Sbjct: 81  ALDTLIADKIVELESDEQKIKVTDGEIEEELHKLHESYGDEEAFNQALTSS-----GTSL 135

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           Q +        + K     +    + ++    +  K+   ++  +      + + +    
Sbjct: 136 QSVKDNIHSYLLTKKLLQDRVSITDDQVQEYFETNKDSFAQQEQVEASHILVENEETAK- 194

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNL-LKKS 253
                   + +E            E+++    +  S G+  Y  + ++  +F+       
Sbjct: 195 --------EVKEMLDNGEDFAQLAEEYSVDTSNAGSGGELGYFAKGEMVAEFEEKAFSME 246

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYV 305
               +NP  T+ G   I + DK++         K  +        ++     ++
Sbjct: 247 IEEISNPIETEFGFHIIKVTDKKEAEEAVLEDHKEEIQEILYEQALQTEYPVWL 300


>gi|323976074|gb|EGB71167.1| ppic-type ppiase domain-containing protein [Escherichia coli
           TW10509]
          Length = 623

 Score = 97.1 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 104/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDVAAKVKHEKALDAYYALQQKVSDAA 395


>gi|291281348|ref|YP_003498166.1| Peptidylprolyl isomerase [Escherichia coli O55:H7 str. CB9615]
 gi|209743820|gb|ACI70217.1| putative protease maturation protein [Escherichia coli]
 gi|290761221|gb|ADD55182.1| Peptidylprolyl isomerase [Escherichia coli O55:H7 str. CB9615]
 gi|320661211|gb|EFX28642.1| periplasmic folding chaperone [Escherichia coli O55:H7 str. USDA
           5905]
          Length = 623

 Score = 97.1 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/396 (10%), Positives = 106/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVRE----------- 177
                    +   + +               E EI +  ++ KN  +             
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 178 ---------------YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE-- 220
                          Y  +         + +      K   +A+     L K  +     
Sbjct: 240 AATMQQPVSDADLQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 221 --KFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
             K A  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDVAAKVKHEKALDAYYALQQKVSDAA 395


>gi|192361586|ref|YP_001982980.1| peptidyl-prolyl cis-trans isomerase D [Cellvibrio japonicus
           Ueda107]
 gi|190687751|gb|ACE85429.1| peptidyl-prolyl cis-trans isomerase D [Cellvibrio japonicus
           Ueda107]
          Length = 270

 Score = 97.1 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/298 (8%), Positives = 81/298 (27%), Gaps = 37/298 (12%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +    C+  ++   S + S     ++NG+ I+  + +  +   ++ + +      
Sbjct: 1   MKKLLLTSACCLAALLMGCSDSGS---IASVNGKGISQEEFNAYLKFKRIPEQDKARVDR 57

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           A+ E +        IEK+G                                         
Sbjct: 58  ALDEYVNRAALAAAIEKTG------------------------------KLDAAVIQAEL 87

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    Q +     +        +  +     + + +  + R +    ++   P      +
Sbjct: 88  EEFKRQMLIGRYFEEHLNGVVDDAAVRNYYAEHQGQYESSRVHAAHILVRIDPTMGETER 147

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQF-QNLLKKS 253
                   +      +     +  + ++   +     G   +L E  + P+F + L    
Sbjct: 148 QAKLSTAHEIYSRLQKGEDFADLAKSYSEDKVSGEKGGDLGWLAEGAVDPEFSKKLFSMK 207

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
               + P +T  G   + + +          +++  +  Q             V  ++
Sbjct: 208 PGEISEPLITPFGFHVVKMLEGPQTIKRSLESVEGEIRYQLRNQAKATETERLVNTVK 265


>gi|284122311|ref|ZP_06386843.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Poribacteria sp. WGA-A3]
 gi|283829362|gb|EFC33756.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Poribacteria sp. WGA-A3]
          Length = 186

 Score = 97.1 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 58/180 (32%), Gaps = 3/180 (1%)

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
            + +   V   +          +I A  ++ + +    +        +     +N   ++
Sbjct: 1   EEMMVRRVRDMETRRGLFVSPEDIRAYYKEQQPLFTSPHAHHIRQILLLPKLGENMETLK 60

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD-LHPQFQNLLKKSQNNTT 258
            R +                E F+     V  G   ++ +++ L P    L K S    T
Sbjct: 61  ARAEILMSQLDEGRTFEQLAELFSDGSESVMGGDLGFVTKNELLPPLRDALHKISPGEVT 120

Query: 259 NPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
               T+ G+  + + + R         +K  + ++    K++K    ++  L+  A I  
Sbjct: 121 PLIETEIGIHILRLEESRPGVTEPFEKVKDAIESRLYQEKLQKSHDAWMSSLKDKAYIEI 180


>gi|168188090|ref|ZP_02622725.1| peptidil-prolyl cis-trans isomerase [Clostridium botulinum C str.
           Eklund]
 gi|169294073|gb|EDS76206.1| peptidil-prolyl cis-trans isomerase [Clostridium botulinum C str.
           Eklund]
          Length = 247

 Score = 97.1 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/285 (11%), Positives = 86/285 (30%), Gaps = 47/285 (16%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKI----NGELEKIAVQELIVETLKKQEIEKS 93
           M +++  T+NG+ IT+ DI   I     ++       + +K  +++LI   +     ++ 
Sbjct: 1   MENKVLATVNGKQITENDIQAAIKRFPQEQQAYLATEQGKKQLLEQLISFEVFYDYGKEM 60

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
                                                       +  +     +  N  +
Sbjct: 61  EYDKTKEYTTAI-------------------------------EIMERDALTQLSVNKVI 89

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
            +    + E+       K+  V   +I      +      +   + K + +  ++ +   
Sbjct: 90  SQVELTDKEVEDYYNANKDNFVVGEMISAKHILV------DTEELAKEVTEEIKNGMTFS 143

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAI 272
              +   K+++       G      +  + P+F+           + P  TQ G   I +
Sbjct: 144 ---DAATKYSTCPSKAQGGNLGKFGKGQMVPEFEEAAFNLEIGKISEPVKTQFGYHLIEV 200

Query: 273 CDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            DK++        ++  +       + +   A  V++L+    + 
Sbjct: 201 EDKQEATKKSFDEVRDLIRTNLLQERQKVKYATTVEELKKKYNVE 245


>gi|83950728|ref|ZP_00959461.1| PPIC-type PPIASE domain protein [Roseovarius nubinhibens ISM]
 gi|83838627|gb|EAP77923.1| PPIC-type PPIASE domain protein [Roseovarius nubinhibens ISM]
          Length = 286

 Score = 97.1 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 76/281 (27%), Gaps = 50/281 (17%)

Query: 38  MSSRIRTTINGEVITDGD---ISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSG 94
            +  +  T++G  IT G    +   +     Q     L K  + +LI + + +       
Sbjct: 31  NADTVVATVDGNEITLGHMIVLRAGLPAQLSQLPPAVLYKGILDQLIQQAIME------- 83

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
                                     ++F  +         +      I  + +     +
Sbjct: 84  --------------------------NNFEGELSKAAKLSLENERRALIAGETINRVANV 117

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
              +  ++       M      E+    +L              ++  K   E       
Sbjct: 118 ALTDEALQKVYEDTYMTAEAQTEFNAAHIL-----------VETEEEAKALIEELNGGAD 166

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAIC 273
                ++ ++     + G+  +     +   F + + K  +   + P  TQ G   I + 
Sbjct: 167 FSALAKEKSTGPSGPNGGELDWFAGDMMVEPFAEAVAKMEKGAISEPVQTQFGWHVIKLN 226

Query: 274 DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           D R    E      + A+      ++    Y+  L   A +
Sbjct: 227 DTR--TKERPELEEVRAELEEVVRQQAIDAYMTDLSEGAKV 265


>gi|271499601|ref|YP_003332626.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya dadantii
           Ech586]
 gi|270343156|gb|ACZ75921.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya dadantii
           Ech586]
          Length = 626

 Score = 97.1 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/395 (8%), Positives = 104/395 (26%), Gaps = 87/395 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + ++ +  +    ++  F +  +  Y            +NG+ IT   + + +
Sbjct: 1   MMDNLRAAANNVVLKVILALIIGSFVLTGVGDYLIRGSGDY-AAKVNGQEITRSQLEQGV 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + ++                   +L K  + +LI ETL  Q     G+      +  
Sbjct: 60  QNERNRQQEMLGDNFSALAANEGYMQQLRKQVLSQLIDETLVVQYAHTLGLNISDEQIKQ 119

Query: 105 FFV---QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
                 +   N     + + + + + G+  + + Q+L  Q +   +++            
Sbjct: 120 AIFSVPEFQTNNRFDNDKYLAQVRQMGLTPDAYAQFLRKQLLTQQLIRGLGSTDFVLQQE 179

Query: 152 -----------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                          + E+     + K+  +     +     + 
Sbjct: 180 LDNLVAMAAQDRTIRTATLDLGVRARSQTVSDDEVKNFYDQNKSRYLAPEQFKVSYIMLD 239

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA------------------------- 223
              + ++  V      A   + +      + +K++                         
Sbjct: 240 AASIMDKTKVDNNDIAAYYEQHKGEFTQPERKKYSVIQLKTEADAKVVLDQLKKGADFAA 299

Query: 224 -------SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
                    +   + G   ++ +     + +    K +   ++   +  G   I + D +
Sbjct: 300 LAKEKSTDIVSRRNGGDLGWMDDGSTVDEIKQAGLKQKGQLSDVIKSSVGYLIIRLDDIQ 359

Query: 277 DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
               +      + A        +   +    L+  
Sbjct: 360 AQRVK--ALDEVRADLAEKVKREKSLDAFYALQQK 392


>gi|239502210|ref|ZP_04661520.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii AB900]
          Length = 436

 Score = 97.1 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/314 (13%), Positives = 105/314 (33%), Gaps = 20/314 (6%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAM-SSRIRTTINGEVITDGDISKRIA----LLKLQK- 67
           K L  +F      ++   S  S+A  +  +   ++  VI   D+ + +A     L+ QK 
Sbjct: 4   KHLKQFFKATTLAVLISSSMHSFAQPTDEVVAIVDNSVILKSDLEQGMAEAAHELQAQKK 63

Query: 68  ---INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS--AEDFSS 122
                  L+   + +LI+   + ++++K GI  D  ++N   ++ A  +G          
Sbjct: 64  EVPPQQYLQFQVLDQLILRQAQLEQVKKYGIKPDEKSLNEAVLKVASQSGSKSLEAFQQK 123

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
           F         + +  +A       + +   M +    + ++    +  +           
Sbjct: 124 FDAIAPGTYENLRSRIAEDLAINRLRQQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHV 183

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
           +   I  +  Q    V K ++        L    N L+K ++    V      +   SD+
Sbjct: 184 IHMRISGDNPQEVQNVAKEVRSQLAQNNDL----NALKKLSTATVKVEGADMGFRPLSDI 239

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD----LGGEIALKAYLSAQNTPTKI 297
             +    +       TT+    + GV  + + +++              ++  Q +    
Sbjct: 240 PAELAARITPLQDGQTTDLISVRDGVHVLKLLERKQNEQKALVPQYQTRHILIQPSEVVS 299

Query: 298 EKHEAEYVKKLRSN 311
            ++  + +  +   
Sbjct: 300 PENAKQIIDSIYKR 313



 Score = 87.8 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 17/157 (10%), Positives = 52/157 (33%), Gaps = 3/157 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +   ++K           +T    I  +++ +    ++ I    +              +
Sbjct: 268 LKLLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLKAGEDFATLAATY 327

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           ++        G   ++    + P+F + + +      + P+ TQ G   + + DKR+   
Sbjct: 328 SNDTGSARDGGSLGWVTPGMMVPEFDKKMQEIPVGEISEPFQTQFGWHILQVTDKREKDM 387

Query: 281 E-IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                +          +       +++++R+NA +  
Sbjct: 388 THEYQERMARQILGERQFNTEIDSWLREVRANAYVEI 424


>gi|259419301|ref|ZP_05743218.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Silicibacter sp.
           TrichCH4B]
 gi|259345523|gb|EEW57377.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Silicibacter sp.
           TrichCH4B]
          Length = 425

 Score = 97.1 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/272 (19%), Positives = 108/272 (39%), Gaps = 8/272 (2%)

Query: 19  YFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ-KINGELEKIAV 77
              L +   +P     +  + S +  T+N +VIT  ++ +R   L +   + G+  + A 
Sbjct: 26  GLALAVALTLPAADVGAQGLFSPVI-TVNEDVITTYELQQRARFLTVLGSVQGDPLETAR 84

Query: 78  QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY 137
            +LI + LK+Q + + G+T   + +     + A+   LS E+F S L + G+     + +
Sbjct: 85  NDLIEDRLKRQVMREVGLTLSEDEITEGMRELAQRANLSLEEFLSGLRQAGVDPETVRDF 144

Query: 138 LAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGF 197
            +    W + ++  F+ +    E EI          +V+  L   +L    +N  Q Q  
Sbjct: 145 TSAGLGWREYIRGRFLAQARPSEAEIDRAMGTAGTGSVQVLLSEIILPLTQENAAQIQEL 204

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNN 256
             +  +   E             +F++     + G+  ++  S L PQ Q ++       
Sbjct: 205 ATQISELKNE-----AAFTASAAQFSASDSSANGGRLPWMSLSRLPPQLQEVVLGLEPGQ 259

Query: 257 TTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
            T P   Q  +    +   R++ G  A  A +
Sbjct: 260 ITQPLPMQGAIAIFRMRGLREVDGRSASFAAI 291



 Score = 39.7 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 10/87 (11%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 235 QYLLESDLHPQFQ-NLLKKSQNNTTNPYVTQKG--VEYIAICDKRD--LGGEIALKAYLS 289
                 D+       L +   N ++       G  + ++ +C +    +  +   +A ++
Sbjct: 338 GSKAPKDIPQDIALELARLDANESSATLTRDNGQTLLFVMLCGRTSELVAAQENARASVA 397

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                 ++      +V++L+++A I  
Sbjct: 398 NALVQQRLNDLAESHVEQLKADARIEI 424


>gi|255528699|ref|ZP_05395439.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           carboxidivorans P7]
 gi|296188773|ref|ZP_06857156.1| peptidyl-prolyl cis-trans isomerase, EpsD family [Clostridium
           carboxidivorans P7]
 gi|255507609|gb|EET84109.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           carboxidivorans P7]
 gi|296046636|gb|EFG86087.1| peptidyl-prolyl cis-trans isomerase, EpsD family [Clostridium
           carboxidivorans P7]
          Length = 248

 Score = 97.1 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/280 (10%), Positives = 76/280 (27%), Gaps = 39/280 (13%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS 99
           +++   +NG+ IT  D+   I     ++      +   ++L+ E +  + I       + 
Sbjct: 3   NKVLAVVNGKEITQVDLDSTIKRFPNERQGYLQTEAGKKQLLEEIISFELIYNYAKDNNM 62

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
              + +                              +    + +    +    M +    
Sbjct: 63  ENDSDYI--------------------------AQLEMAKKEILTQTAI-AKVMQQVSVE 95

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
           + E+       K        +                  +++ K+  E         +  
Sbjct: 96  DKEVEDYYNANKENFKEPETVSAKHIL---------VESEEKAKEVAEEINAGTTFEDAA 146

Query: 220 EKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD- 277
           +K++S       G         + P+F+           + P  TQ G   I + DK   
Sbjct: 147 KKYSSCPSKEQGGNLGKFGRGQMVPEFEEAAFALEIGTLSAPVKTQFGYHLIKVEDKSKG 206

Query: 278 -LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            +     +K  +  +    +      +  K+LR    +  
Sbjct: 207 AVKSFEEVKNSIKNKLLQERQSFKYTQLNKELRQKYDVQI 246


>gi|126701124|ref|YP_001090021.1| putative foldase lipoprotein [Clostridium difficile 630]
 gi|254977125|ref|ZP_05273597.1| putative foldase lipoprotein (late stage protein export
           lipoprotein) [Clostridium difficile QCD-66c26]
 gi|255094454|ref|ZP_05323932.1| putative foldase lipoprotein (late stage protein export
           lipoprotein) [Clostridium difficile CIP 107932]
 gi|255102710|ref|ZP_05331687.1| putative foldase lipoprotein (late stage protein export
           lipoprotein) [Clostridium difficile QCD-63q42]
 gi|255308531|ref|ZP_05352702.1| putative foldase lipoprotein (late stage protein export
           lipoprotein) [Clostridium difficile ATCC 43255]
 gi|255316205|ref|ZP_05357788.1| putative foldase lipoprotein (late stage protein export
           lipoprotein) [Clostridium difficile QCD-76w55]
 gi|255518867|ref|ZP_05386543.1| putative foldase lipoprotein (late stage protein export
           lipoprotein) [Clostridium difficile QCD-97b34]
 gi|255652046|ref|ZP_05398948.1| putative foldase lipoprotein (late stage protein export
           lipoprotein) [Clostridium difficile QCD-37x79]
 gi|306521784|ref|ZP_07408131.1| putative foldase lipoprotein (late stage protein export
           lipoprotein) [Clostridium difficile QCD-32g58]
 gi|115252561|emb|CAJ70404.1| Peptidylprolyl isomerase PrsA-like [Clostridium difficile]
          Length = 331

 Score = 97.1 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/326 (11%), Positives = 97/326 (29%), Gaps = 32/326 (9%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI------- 68
           +     L+I  I+ +      +       T+ G  I+  +  K IAL K           
Sbjct: 1   MKKVITLVIAMILVVSVTACSSSKGETVATVEGTKISSDEFKKTIALYKDSMEQTYGKDI 60

Query: 69  -----------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
                        + + + + +LI   +   + +K  +      V   F +     G   
Sbjct: 61  WDKEVEKGVKYKDKFKDLILDQLITTEVIYSQAKKDNLLPKKEDVEKSFKELKDAMGKDE 120

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
           +            +    Q      +     +++F  K    + E+       K+   ++
Sbjct: 121 KYKEQLKKLGIDDEFLRDQQEKD--LAMQNYQSNFAKKTKISDEEMKKYYDTHKDEFKKD 178

Query: 178 YLIRTVLFSIPDNKLQNQ------GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
            +  + +     +              +K+ ++A +            +K++        
Sbjct: 179 EVEASHILLKTVDDNNKPLSDKEKAEAKKKAEEALKEVKSGEDFAKVAKKYSQDTSASDG 238

Query: 232 GKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDK-RDLGGEIALKAYLS 289
           GK  +     +  +F++      +   ++   TQ G   I + D+  +       K  + 
Sbjct: 239 GKLGFFSRGQMVAEFEDAAFSMKKGEVSDLVETQYGYHIIKVTDRINEQTSFEDAKETIK 298

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAIIH 315
            Q    K ++     ++KL   A + 
Sbjct: 299 DQLLKNKYQEQ----IEKLTKEAKVE 320


>gi|15800171|ref|NP_286183.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           O157:H7 EDL933]
 gi|15829749|ref|NP_308522.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           O157:H7 str. Sakai]
 gi|168747883|ref|ZP_02772905.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4113]
 gi|168754546|ref|ZP_02779553.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4401]
 gi|168760404|ref|ZP_02785411.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4501]
 gi|168768396|ref|ZP_02793403.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4486]
 gi|168777137|ref|ZP_02802144.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4196]
 gi|168778934|ref|ZP_02803941.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4076]
 gi|168786292|ref|ZP_02811299.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC869]
 gi|168798005|ref|ZP_02823012.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC508]
 gi|208809217|ref|ZP_03251554.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4206]
 gi|208815330|ref|ZP_03256509.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4045]
 gi|208823220|ref|ZP_03263538.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4042]
 gi|209395856|ref|YP_002269088.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4115]
 gi|217325591|ref|ZP_03441675.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. TW14588]
 gi|254791625|ref|YP_003076462.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli O157:H7
           str. TW14359]
 gi|261223924|ref|ZP_05938205.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261256362|ref|ZP_05948895.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli O157:H7
           str. FRIK966]
 gi|12513303|gb|AAG54791.1|AE005223_6 putative protease maturation protein [Escherichia coli O157:H7 str.
           EDL933]
 gi|13359952|dbj|BAB33918.1| putative protease maturation protein [Escherichia coli O157:H7 str.
           Sakai]
 gi|187767557|gb|EDU31401.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4196]
 gi|188017729|gb|EDU55851.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4113]
 gi|189002976|gb|EDU71962.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4076]
 gi|189357979|gb|EDU76398.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4401]
 gi|189362425|gb|EDU80844.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4486]
 gi|189369155|gb|EDU87571.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4501]
 gi|189373538|gb|EDU91954.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC869]
 gi|189379237|gb|EDU97653.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC508]
 gi|208729018|gb|EDZ78619.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4206]
 gi|208731978|gb|EDZ80666.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4045]
 gi|208737413|gb|EDZ85097.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4042]
 gi|209157256|gb|ACI34689.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4115]
 gi|209743814|gb|ACI70214.1| putative protease maturation protein [Escherichia coli]
 gi|209743816|gb|ACI70215.1| putative protease maturation protein [Escherichia coli]
 gi|209743818|gb|ACI70216.1| putative protease maturation protein [Escherichia coli]
 gi|209743822|gb|ACI70218.1| putative protease maturation protein [Escherichia coli]
 gi|217321812|gb|EEC30236.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. TW14588]
 gi|254591025|gb|ACT70386.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli O157:H7
           str. TW14359]
 gi|320192857|gb|EFW67497.1| Peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli O157:H7
           str. EC1212]
 gi|320638436|gb|EFX08150.1| periplasmic folding chaperone [Escherichia coli O157:H7 str. G5101]
 gi|320643817|gb|EFX12940.1| periplasmic folding chaperone [Escherichia coli O157:H- str.
           493-89]
 gi|320649168|gb|EFX17746.1| periplasmic folding chaperone [Escherichia coli O157:H- str. H
           2687]
 gi|320656061|gb|EFX23977.1| periplasmic folding chaperone [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320665187|gb|EFX32280.1| periplasmic folding chaperone [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326341205|gb|EGD64997.1| Peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli O157:H7
           str. 1044]
 gi|326346020|gb|EGD69759.1| Peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli O157:H7
           str. 1125]
          Length = 623

 Score = 97.1 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/396 (10%), Positives = 106/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVRE----------- 177
                    +   + +               E EI +  ++ KN  +             
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 178 ---------------YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE-- 220
                          Y  +         + +      K   +A+     L K  +     
Sbjct: 240 AATMQQPVSDADLQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 221 --KFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
             K A  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDVAAKVKHEKALDAYYALQQKVSDAA 395


>gi|218961587|ref|YP_001741362.1| putative Parvulin-like peptidyl-prolyl isomerase [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730244|emb|CAO81156.1| putative Parvulin-like peptidyl-prolyl isomerase [Candidatus
           Cloacamonas acidaminovorans]
          Length = 281

 Score = 97.1 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/274 (10%), Positives = 89/274 (32%), Gaps = 11/274 (4%)

Query: 41  RIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
           +I   +    I++ ++ +  A + L +    L + A++ LI   L   +  +SGI     
Sbjct: 2   QIIAKVFEFEISEQELERECAKVSLAEREKCL-EGALKRLIDRCLLLYKAMESGIKISDT 60

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                  +                  + +     ++ L  + +    + + F        
Sbjct: 61  EYENAIWEL---LDEEDPLKLWSTSLEQLTPQEMEKLLKQRLMINKYINSIFPQNIPITN 117

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            +I     + K   ++   +R     I ++  + +   ++  ++               +
Sbjct: 118 AKIKEFYDEQKEFFLKPEQVRCSHILIRNDNEEAKAKAEQIRRE----IHNADDFTYFCQ 173

Query: 221 KFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICD--KRD 277
           K++    +   G   +     + P+ + +    +    + P+++  G   +      +++
Sbjct: 174 KYSDCPSNNVCGDLGWFPRGKMIPEIEEVAFSLTVGEISQPFLSPYGYHILMKTGQSEKE 233

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
                 +K  L A+    + E     ++ +LR  
Sbjct: 234 YIPFEDIKDSLYARLQQIEREYKLLRHLAELRKQ 267


>gi|218892241|ref|YP_002441108.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa
           LESB58]
 gi|218772467|emb|CAW28249.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa
           LESB58]
          Length = 621

 Score = 97.1 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/402 (11%), Positives = 111/402 (27%), Gaps = 89/402 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++++  +    +       S +   +NG+ I+  ++ + +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60

Query: 61  ALLKLQ-------------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF- 106
            + + Q               +  L++ A++ LI  TL  Q  +     F    ++    
Sbjct: 61  DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120

Query: 107 --VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF------------ 152
              +   +   +A+ F   + +       F+Q L  + +   +                 
Sbjct: 121 QTPEFQVDGKFNADRFDQVIRQMNYSRMQFRQMLGQEMLIGQLRAGLAGTGFVTDNELQS 180

Query: 153 ---------------------MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                                       E++      K + +T  + ++  V        
Sbjct: 181 FARLEKQTRDFATLAIKADASKSSVSEDEVKAFYEGHKSEFMTPEQVVVEYVELKKSSFF 240

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKL-------------------------------- 219
            Q +   +      ++    L +  +                                  
Sbjct: 241 DQVKVKQEDLEALYQKEIANLSEQRDAAHILIEVNDKVGDEQAKAKIDEIKARLAKGEDF 300

Query: 220 ----EKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAIC 273
               ++F+  I    + G   Y       P F+       Q   + P  T  G   I + 
Sbjct: 301 AALAKEFSQDIGSAATGGDLGYAGRGVYDPAFEEALYALKQGEVSAPVKTPYGYHLIKLL 360

Query: 274 DKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             +  ++    +LK  L  +     +E+   E  K L S+A 
Sbjct: 361 GVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLESSAY 402


>gi|213157107|ref|YP_002319152.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acinetobacter
           baumannii AB0057]
 gi|215483612|ref|YP_002325833.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|301345175|ref|ZP_07225916.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii AB056]
 gi|301511287|ref|ZP_07236524.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii AB058]
 gi|332851812|ref|ZP_08433737.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013150]
 gi|332865808|ref|ZP_08436592.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013113]
 gi|193077182|gb|ABO11972.2| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii ATCC
           17978]
 gi|213056267|gb|ACJ41169.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acinetobacter
           baumannii AB0057]
 gi|213989120|gb|ACJ59419.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|332729819|gb|EGJ61154.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013150]
 gi|332735020|gb|EGJ66105.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013113]
          Length = 436

 Score = 97.1 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/314 (13%), Positives = 104/314 (33%), Gaps = 20/314 (6%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAM-SSRIRTTINGEVITDGDISKRIA----LLKLQK- 67
           K L  +F      ++   S  S+A  +  +   ++  VI   D+ + +A     L+ QK 
Sbjct: 4   KHLKQFFKATTLAVLISSSMHSFAQPTDEVVAIVDNSVILKSDLEQGMAEAAHELQAQKK 63

Query: 68  ---INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS--AEDFSS 122
                  L+   + +LI+   + ++++K GI  D  ++N   ++ A  +G          
Sbjct: 64  EVPPQQYLQFQVLDQLILRQAQLEQVKKYGIKPDEKSLNEAVLKVASQSGSKSLEAFQQK 123

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
                     + +  +A       + +   M +    + ++    +  +           
Sbjct: 124 LDAIAPGTYENLRSRIAEDLAINRLRQQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHV 183

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
           +   I  +  Q    V K ++        L    N L+K ++    V      +   SD+
Sbjct: 184 IHMRISGDNPQEVQNVAKEVRSQLAQSNDL----NALKKLSTATVKVEGADMGFRPLSDI 239

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD----LGGEIALKAYLSAQNTPTKI 297
             +    +       TT+    + GV  + + +++              ++  Q +    
Sbjct: 240 PAELAARITPLQDGQTTDLISVRDGVHVLKLLERKQNEQKALVPQYQTRHILIQPSEVVS 299

Query: 298 EKHEAEYVKKLRSN 311
            ++  + +  +   
Sbjct: 300 PENAKQIIDSIYKR 313



 Score = 88.2 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 17/157 (10%), Positives = 52/157 (33%), Gaps = 3/157 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +   ++K           +T    I  +++ +    ++ I    +              +
Sbjct: 268 LKLLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLKAGEDFATLAATY 327

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           ++        G   ++    + P+F + + +      + P+ TQ G   + + DKR+   
Sbjct: 328 SNDTGSARDGGSLGWVTPGMMVPEFDKKMQEIPVGEISEPFQTQFGWHILQVTDKREKDM 387

Query: 281 E-IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                +          +       +++++R+NA +  
Sbjct: 388 THEYQERMARQILGERQFNTEIDSWLREVRANAYVEI 424


>gi|292490923|ref|YP_003526362.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
           halophilus Nc4]
 gi|291579518|gb|ADE13975.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
           halophilus Nc4]
          Length = 637

 Score = 97.1 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/406 (7%), Positives = 101/406 (24%), Gaps = 99/406 (24%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + +        +    + I F +  I +Y      + +  ++NGE IT  +     
Sbjct: 1   MLEAIRSRAQGIFAWVIVGLITIPFALWGINNYFREGGEA-LAASVNGEEITTREFRAAF 59

Query: 61  ALLKLQKI-------------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
                Q               +   ++  ++ LI + L      + G+    + ++    
Sbjct: 60  QRYTQQLRFLMREGFSEEMLDDPATKQRVLEGLIEQRLVLDAAGELGLGMSDSELSKVIH 119

Query: 108 QHARNTGLSAEDFSSFLD-------------------------------------KQGIG 130
            +      + +      +                                     +Q + 
Sbjct: 120 NNEAFQDETGQFDFQRYESVLNSQGLTTAAYEARLRLSLLSEQLASTLHLSAFATQQEME 179

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT---------------- 174
           D    ++   +  +  V  + F       + E+    ++  +                  
Sbjct: 180 DIARLRHQEREIGYGIVPSSKFRDAIQISDEELRQYYEEHPDEFRTPERVAVDYLRLTAK 239

Query: 175 ---------------------------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
                                       +      ++          +   +++ ++A  
Sbjct: 240 SLATDIPVDEQTLRDLYAESKDQFGTPEQRRASHILVQVPQGGDDAARQAAREKAEEALR 299

Query: 208 SRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQ 264
              +        ++ +         G   +     + P F+      +   + + P +++
Sbjct: 300 RLQQGEPFEEVAKEVSEDPGSAQQGGDLGFFGRGVMDPAFEEAAFSLEKVGDLSEPVLSK 359

Query: 265 KGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
            G   I +   +  +      ++  L+ +      E+H  E  + L
Sbjct: 360 FGYHIIQLTGIQRGEAPSFEEVREELAQKYRQQLAEEHFYEQAETL 405


>gi|260550086|ref|ZP_05824300.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. RUH2624]
 gi|260406841|gb|EEX00320.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. RUH2624]
          Length = 441

 Score = 97.1 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/314 (11%), Positives = 101/314 (32%), Gaps = 20/314 (6%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAM-SSRIRTTINGEVITDGDISK-------RIALLKL 65
           K L  +F      ++   S  S+A  +  +   ++  VI   D+ +        +   K 
Sbjct: 9   KHLKQFFKATTLAVLISSSMHSFAQPTDEVVAIVDNSVILKSDLEQGMAEATHELQSQKK 68

Query: 66  QKINGELEK-IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS--AEDFSS 122
           +    +  +   + +LI+   + +++++ GI  D  ++N   ++ A  +G          
Sbjct: 69  EVPPQQYLQFQVLDQLILRQAQLEQVKRYGIKPDEKSLNEAVLKVASQSGSKSLEAFQQK 128

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
                     + +  +A       + +   M +    + ++    +  +           
Sbjct: 129 LDAIAPGTYENLRGRIAEDLAINRLRQQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHV 188

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
           +   I  +  Q    V K ++        L    N L+K ++    V      +   SD+
Sbjct: 189 IHMRISGDNPQEVQSVAKEVRSKLAQSNDL----NALKKLSTATVKVEGADMGFRPLSDI 244

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD----LGGEIALKAYLSAQNTPTKI 297
             +    +       TT+    + GV  + + +++              ++  Q +    
Sbjct: 245 PAELAARITPLQDGQTTDLISVRDGVHVLKLLERKQNEQKALVPQYQTRHILIQPSEVVS 304

Query: 298 EKHEAEYVKKLRSN 311
            ++  + +  +   
Sbjct: 305 PENAKQIIDSIYKR 318



 Score = 89.0 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 17/157 (10%), Positives = 52/157 (33%), Gaps = 3/157 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +   ++K           +T    I  +++ +    ++ I    +              +
Sbjct: 273 LKLLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLKAGEDFATLAATY 332

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           ++        G   ++    + P+F + + +      + P+ TQ G   + + DKR+   
Sbjct: 333 SNDTGSARDGGSLGWVNPGMMVPEFDKKMQEIPVGQISEPFQTQFGWHILQVTDKREKDM 392

Query: 281 E-IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                +          +       +++++R+NA +  
Sbjct: 393 THEYQERMARQILGERQFNTEIDSWLREVRANAYVEI 429


>gi|226952980|ref|ZP_03823444.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. ATCC 27244]
 gi|226836301|gb|EEH68684.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. ATCC 27244]
          Length = 437

 Score = 97.1 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/311 (11%), Positives = 98/311 (31%), Gaps = 18/311 (5%)

Query: 18  TYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA----LLKLQKI----N 69
            +   ++  ++    +     +  +   ++  VI   D+ + IA     LK Q       
Sbjct: 9   IFRATVLAALISSSMHSFAQPADEVVAIVDSSVILKSDLVQGIAEAEHQLKAQNQTVPPK 68

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS--AEDFSSFLDKQ 127
             L+   + +LI+   + +++++ GI  D N++N   ++ A  +G +  +          
Sbjct: 69  QYLQMQVLDQLIIRQAQLEQVKRYGIKPDENSLNAAVLRVANQSGSNSLSAFQQKLDAIA 128

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
                + +  +A       + +   M +    + ++      +K+   +  L   V    
Sbjct: 129 PGTYENLRNRIAEDLAIGRLRQQQVMSRIKISDHDVENF---LKSPEGQAALGTQVHVLH 185

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
                 +   VQK  ++   S            K ++    V      +   S++  +  
Sbjct: 186 MRISGTDNNEVQKVAEEVRRSLATSNDPKAISSKLSTGTVTVDGADMGFRALSEIPTELA 245

Query: 248 NLLKK-SQNNTTNPYVTQKGVEYIAICDKRD----LGGEIALKAYLSAQNTPTKIEKHEA 302
             +       TT     + G   + + +++              ++  Q +         
Sbjct: 246 ARVTPLQVGQTTGLVNVRDGTHVLKLLERKQNDQRALVPQYKTRHILIQTSEVVSSDRAK 305

Query: 303 EYVKKLRSNAI 313
           + +  L +   
Sbjct: 306 QMIDSLYNRIK 316



 Score = 87.0 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 48/142 (33%), Gaps = 3/142 (2%)

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQY 236
              +T    I  +++ +    ++ I                   F++        G   +
Sbjct: 284 PQYKTRHILIQTSEVVSSDRAKQMIDSLYNRIKAGEDFATLAATFSNDPGSARDGGNLGW 343

Query: 237 LLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL-SAQNTP 294
           +    + P+F+ ++K+      + P+ +Q G   + + D R        +  +       
Sbjct: 344 VNAGVMVPEFEKVMKEIPVGQLSEPFQSQFGWHILEVTDTRQQDMTKEAQERMTRQILGE 403

Query: 295 TKIEKHEAEYVKKLRSNAIIHY 316
            + E     + ++LR+NA +  
Sbjct: 404 RQFETEVDSWTRELRANAYVEI 425


>gi|254453743|ref|ZP_05067180.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Octadecabacter
           antarcticus 238]
 gi|198268149|gb|EDY92419.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Octadecabacter
           antarcticus 238]
          Length = 388

 Score = 97.1 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 89/248 (35%), Gaps = 5/248 (2%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             T+N  V+++ +I +R+ +L   +  G LE  A ++LI + LK   +  +G+      +
Sbjct: 14  AITVNDSVVSEFEIDQRVIMLGTFRTPGNLEDTAREQLIEDRLKLAALNSAGLRITDEGL 73

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                + A    +  + F + L + G+ +  F+ ++ +   W D ++  F  +    E +
Sbjct: 74  VGAMGEFATRANMDLDQFITMLGQSGVSEETFRDFVRVNVSWRDFIRTRFNDRAQVSEAD 133

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           I     +    +  E L+  ++                   D             +  + 
Sbjct: 134 IDLALGQSDASSSIEVLLSEII----IPAPPESAEQANATADRIAQLTSTAAFEAEARRV 189

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           ++       G+  +L  S+     +  LL  +    T P     GV    + D R++   
Sbjct: 190 SALPSKTRGGRLDWLPISNYPAGLRGLLLNLAPGEITAPLPITNGVALFQMRDVREVPRA 249

Query: 282 IALKAYLS 289
               A + 
Sbjct: 250 APEPAAIE 257


>gi|262370367|ref|ZP_06063693.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter johnsonii SH046]
 gi|262314709|gb|EEY95750.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter johnsonii SH046]
          Length = 439

 Score = 97.1 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/289 (9%), Positives = 88/289 (30%), Gaps = 21/289 (7%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQK--------INGELEKIAVQELIVETLKKQE 89
            S  +   ++  VI   D+   +  LK Q             L + A+++LI+   + ++
Sbjct: 34  ASDEVVAVVDNSVILKSDLEASMTELKHQLESQKKQVPPEQYLAQQALEQLIIRQTQLEQ 93

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLS--AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           +++  I  D  ++N   +  A+ +G +                    +  +A       +
Sbjct: 94  VKRYNIQPDEKSLNEAVLNVAKQSGSTSLEAFQQKLDKMAPGTYASLRSRVAEDLAINRL 153

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
            +     +    + ++       +        +  +   +  +         K       
Sbjct: 154 RQQIVTSRIQISDQDVKNFLNTPQGQAALGNQVHVLHVRVSGDNADTVAKQVKT------ 207

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKG 266
                       +KF++    V      +   SD+  +    +        T+    + G
Sbjct: 208 VLANDNDVAAIAKKFSTAGTKVEGADMGFRALSDIPSELAARVSPLQVGQITDLITVRDG 267

Query: 267 VEYIAICDKRDLGGEIAL----KAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           V  + + +++    +  +      ++  Q +     ++  + ++ L + 
Sbjct: 268 VHLLKLVERKGAEQKAIVPQYKARHILIQPSEVVSPENAKQMIESLYNR 316



 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 15/142 (10%), Positives = 48/142 (33%), Gaps = 3/142 (2%)

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQY 236
              +     I  +++ +    ++ I+       +          +++        G   +
Sbjct: 286 PQYKARHILIQPSEVVSPENAKQMIESLYNRVQKGEDFAVLASTYSNDTGSARDGGSLGW 345

Query: 237 LLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL-SAQNTP 294
           +    + PQF+  +K +    T+ P+ TQ G   + + + R        +  +       
Sbjct: 346 VSPGVMVPQFEETMKNTPVGQTSKPFQTQFGWHILQVTETRQQDMTAEYQERMARQILGE 405

Query: 295 TKIEKHEAEYVKKLRSNAIIHY 316
            + +     ++++ R+ A +  
Sbjct: 406 RQFDAELDSWLRETRNRAFVEI 427


>gi|295106377|emb|CBL03920.1| Parvulin-like peptidyl-prolyl isomerase [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 439

 Score = 97.1 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/346 (10%), Positives = 96/346 (27%), Gaps = 45/346 (13%)

Query: 14  KLLTTYFVLIIF--CIVPIVSYKSWAMSSR-------IRTTINGEVITDGDISKRIALLK 64
            ++    V  +   C+  + +    A +S        +  T+NG  I + +++  +  ++
Sbjct: 5   NIMKAVCVAGLAATCVWGLAACADGASASGTKTYTGGVAATVNGTEIPEDEVTGMVESIR 64

Query: 65  LQK-------------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
            Q               N    +   +E+I    +++ I++     + +  +        
Sbjct: 65  SQMSMTDADTWGQWLADNAMTPESVREEMIDSFAQQELIKQGAKEKNISVESSEIDDIVN 124

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM--EIPANKQK 169
            T  + ED   +           ++Y   +++   +++      + + E   +    K  
Sbjct: 125 KTKANYEDDEKWKAALEQAGFTEEKY--RENVESQLLQKKLTESFASDEEPSQEDLLKYA 182

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
               +  +   R+               V  +I   +       K  +K     +     
Sbjct: 183 QMYASAYDGAKRSSHILFDSGDEATAQSVLDQINSGQLDFAEAAKQYSKDNAEGTGGSAA 242

Query: 230 SIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDK----------RDL 278
             G   +   S    ++ +      ++  +    +Q G+  I   D              
Sbjct: 243 KGGDVGWDKLSSFVTEYTDALAGLEKDQVSGLVTSQYGIHIIKCTDVFNAPKVVGEDGTE 302

Query: 279 GGEIALKAYL--------SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             E+     +                      E+  + + NA I  
Sbjct: 303 TVELTSTDQIPVEFLDSVKESLKQQNQSTAVQEWFNEYKENADIQI 348


>gi|254234899|ref|ZP_04928222.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa
           C3719]
 gi|296389804|ref|ZP_06879279.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas aeruginosa PAb1]
 gi|126166830|gb|EAZ52341.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa
           C3719]
          Length = 621

 Score = 97.1 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/402 (11%), Positives = 111/402 (27%), Gaps = 89/402 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++++  +    +       S +   +NG+ I+  ++ + +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60

Query: 61  ALLKLQ-------------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF- 106
            + + Q               +  L++ A++ LI  TL  Q  +     F    ++    
Sbjct: 61  DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120

Query: 107 --VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF------------ 152
              +   +   +A+ F   + +       F+Q L  + +   +                 
Sbjct: 121 QTPEFQVDGKFNADRFDQVIRQMNYSRMQFRQMLGQEMLIGQLRAGLAGTGFVTDNELQS 180

Query: 153 ---------------------MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                                       E++      K + +T  + ++  V        
Sbjct: 181 FARLEKQTRDFATLAIKADASKSSVSEDEVKAFYEGHKSEFMTPEQVVVEYVELKKSSFF 240

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKL-------------------------------- 219
            Q +   +      ++    L +  +                                  
Sbjct: 241 DQVKVKQEDLEALYQKEIANLSEQRDAAHILIEVNDKVGDEQAKAKIDEIKARLAKGEDF 300

Query: 220 ----EKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAIC 273
               ++F+  I    + G   Y       P F+       Q   + P  T  G   I + 
Sbjct: 301 AALAKEFSQDIGSAATGGDLGYAGRGVYDPAFEEALYALKQGEVSAPVKTPYGYHLIKLL 360

Query: 274 DKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             +  ++    +LK  L  +     +E+   E  K L S+A 
Sbjct: 361 GVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLESSAY 402


>gi|198276169|ref|ZP_03208700.1| hypothetical protein BACPLE_02358 [Bacteroides plebeius DSM 17135]
 gi|198270981|gb|EDY95251.1| hypothetical protein BACPLE_02358 [Bacteroides plebeius DSM 17135]
          Length = 467

 Score = 96.7 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/319 (11%), Positives = 94/319 (29%), Gaps = 19/319 (5%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI- 60
                  ++  I  +T    +++     + +     +   +   +  E I   D+     
Sbjct: 4   NKSNRQKMNKLI--MTGVLAILLALTGTVPAVAQDNVIDEVVWVVGDEAILKSDVENERL 61

Query: 61  -ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
            A  + ++ +G+   +  +EL V+ L   + E   I      V                 
Sbjct: 62  NAQYEGRRFDGDPYCVIPEELAVQKLFLHQAEIDSIEVSDQEVLQQVETRISWLTDQIGS 121

Query: 120 FSSFLDKQGIGDNHFKQYLAIQS---IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
                +         ++ L       +    ++   +        E+     K+   ++ 
Sbjct: 122 KEKLEEYYNKTSTQIREMLRENIRDGLTVQEMQKKIVGDIKLTPAEVRNYFSKLPQDSIP 181

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-----HDVSI 231
               +  +  I       +  +++  K+  +   R+ K        A             
Sbjct: 182 FVPTQVEVQIITREPKIKEEEIERVKKELRDFTDRINKGETTFSTLARMYSEDPGSARRG 241

Query: 232 GKAQYLLESDLHPQFQNLLKKSQN--NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS 289
           G+  +    +L P+F N++    +    +  + T+ G     + +KR   G+     ++ 
Sbjct: 242 GEYGFTGRGELTPEFANVVFNLTDPKKISKVFETEYGYHIAQLIEKR---GDRVSYRHIL 298

Query: 290 AQNTPTKIEKHEAEYVKKL 308
               P   EK     + KL
Sbjct: 299 --IKPRVDEKEIEAELNKL 315


>gi|311104694|ref|YP_003977547.1| PPIC-type PPIASE domain-containing protein 1 [Achromobacter
           xylosoxidans A8]
 gi|310759383|gb|ADP14832.1| PPIC-type PPIASE domain protein 1 [Achromobacter xylosoxidans A8]
          Length = 258

 Score = 96.7 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 51/305 (16%), Positives = 99/305 (32%), Gaps = 52/305 (17%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ--KINGELE 73
           +    +L   C++ + ++           T+NG+ I    + + + LL  Q    + +L 
Sbjct: 1   MKRIVMLAAACVIAVPAFAQN------VATVNGKAIPQKSLDQFVKLLVSQGATDSPQLR 54

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           +   QE+I   +  Q  E SGI   ++                                 
Sbjct: 55  EQVKQEMINRQIFVQAAEASGIAKQADVQTEV---------------------------- 86

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
               LA Q I    +  D++ K+   + ++ A  +K+K     +   +     + D K  
Sbjct: 87  ---ELARQGILVRALMADYLAKHPVSDAKVTAEYEKIKKEQAGKMEYKVRHILVEDEKTA 143

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK 252
           N    Q +            K  +  +K +         G   +   ++    F   + +
Sbjct: 144 NDLLAQIKSNK--------SKFNDLAKKNSKDPGSAEKGGDLGWAPPTNYVQPFAQAVTQ 195

Query: 253 SQNN--TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
            +       P  TQ G   I + D R +  E      +  Q      ++  A+Y K+LR 
Sbjct: 196 LKKGELVDKPVQTQFGWHIIMVDDTRPV--EFPPLDQVRPQLEEMLRQQTLADYQKELRE 253

Query: 311 NAIIH 315
            A I 
Sbjct: 254 KAKIQ 258


>gi|325846702|ref|ZP_08169617.1| putative peptidylprolyl isomerase PrsA1 [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481460|gb|EGC84501.1| putative peptidylprolyl isomerase PrsA1 [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 345

 Score = 96.7 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/323 (12%), Positives = 98/323 (30%), Gaps = 42/323 (13%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSR-------------------IRTTINGEVITDG 54
           K +    +   F      +  +   + +                       + GE I+  
Sbjct: 3   KKIIALVLATSFLFSACANDNAKDKNDKGSNETQTSESAKKEDLPKDAVAVVGGEKISKE 62

Query: 55  DISKRIALLKL-QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
                ++          +L+   VQ LI + L   +++K+ +  D   +N  F+Q+ +  
Sbjct: 63  SYKDEMSFYSAMLASQQQLKPSIVQMLIQDKLIADDMKKNDVKVDDKELNDKFLQYIQQF 122

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
           G   +      D     D   +     Q       +  F  K    + +I     + K+ 
Sbjct: 123 GGQEKFDKMLEDYNMSSDKFKETIKKDQIYQKH--REWFEKKNPVSDKDIKKYYDEHKDT 180

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIG 232
             +      ++              +   K+ ++            ++++    +    G
Sbjct: 181 LAQVKASHILV------------EDENTAKEVKKKLDDGEDFAKLAKEYSKDTANSAKGG 228

Query: 233 KAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ 291
              Y  +  +  +F +      +   ++P  T  G   I + DK+D          L  +
Sbjct: 229 DLGYFTKDKMVKEFADKAFAMKKGEISDPVKTSYGYHIIKVEDKKDNP------DALKEE 282

Query: 292 NTPTKIEKHEAEYVKKLRSNAII 314
            +    +K  A+Y+  L + A +
Sbjct: 283 ISKALNDKKYADYLTDLFNKANV 305


>gi|255657457|ref|ZP_05402866.1| putative foldase lipoprotein (late stage protein export
           lipoprotein) [Clostridium difficile QCD-23m63]
 gi|296449052|ref|ZP_06890842.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP08]
 gi|296262145|gb|EFH08950.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP08]
          Length = 331

 Score = 96.7 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/326 (11%), Positives = 97/326 (29%), Gaps = 32/326 (9%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI------- 68
           +     L+I  I+ +      +       T+ G  I+  +  K IAL K           
Sbjct: 1   MKKVITLVIAMILVVSVTACNSSKGETVATVEGTKISSDEFKKTIALYKDSMEQTYGKDI 60

Query: 69  -----------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
                        + + + + +LI   +   + +K  +      V   F +     G   
Sbjct: 61  WDKEVEKGVKYKDKFKDLILDQLITTEVIYSQAKKDNLLPKKEDVEKSFKELKDAMGKDE 120

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
           +            +    Q      +     +++F  K    + E+       K+   ++
Sbjct: 121 KYKEQLKKLGIDDEFLRDQQEKD--LAMQNYQSNFTKKTKISDEEMKKYYDTHKDEFKKD 178

Query: 178 YLIRTVLFSIPDNKLQNQ------GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
            +  + +     +              +K+ ++A +            +K++        
Sbjct: 179 EVEASHILLKTVDDNNKPLSAKEKAEAKKKAEEALKEVKSGEDFAKVAKKYSQDASASDG 238

Query: 232 GKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDK-RDLGGEIALKAYLS 289
           GK  +     +  +F++      +   ++   TQ G   I + D+  +       K  + 
Sbjct: 239 GKLGFFSRGQMVAEFEDAAFSMKKGEVSDLVETQYGYHIIKVTDRINEQTSFEDAKETIK 298

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAIIH 315
            Q    K ++     ++KL   A + 
Sbjct: 299 DQLLKNKYQEQ----IEKLTKEAKVE 320


>gi|146339244|ref|YP_001204292.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. ORS278]
 gi|146192050|emb|CAL76055.1| putative Peptidylprolyl isomerase [Bradyrhizobium sp. ORS278]
          Length = 308

 Score = 96.7 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/318 (9%), Positives = 90/318 (28%), Gaps = 41/318 (12%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPI--VSYKSWAMSSRIRTTINGEVITDGD---ISKRIALL 63
           +   + + T + V  +   +    ++    A +  +  T+NG  I + +   + + +   
Sbjct: 8   MRRSLAIRTHFVVACLAASLGATEIARAEQASADPVIATVNGSEIHESELAMVDEIVGRN 67

Query: 64  KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
              +   E     ++ +I   L      +  I  +++                       
Sbjct: 68  LPTQDRIERRDTILKMMIDTILLSDIARERKIVDEADIARRT------------------ 109

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                        +   Q +   +++           +        +K  + +  +    
Sbjct: 110 ------------TFARNQGLMTQLLREVGQRAVSEETVRKAYEDVVLKAASEQTEVHLRH 157

Query: 184 LFSIPDN--KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLES 240
           L  +  +      +  ++ R + A E   +         + +         G   + +  
Sbjct: 158 LVFLTKDAPDDAARKAIEARAQAALERLKKGEDFAAVATETSDDPVTKSRGGDFGWRIRP 217

Query: 241 DLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
           +L  ++ +   +    + +    T  G+  I + D+R           +  +        
Sbjct: 218 ELSKEYADAAFEMKNGDISPLIKTGVGLHIIKLEDRRTRRP--PEFDTVRERVAAMVSAT 275

Query: 300 HEAEYVKKLRSNAIIHYY 317
            + E V K R+ A I  +
Sbjct: 276 AQIELVDKARAAAKIERF 293


>gi|329888709|ref|ZP_08267307.1| PPIC-type PPIASE domain protein [Brevundimonas diminuta ATCC 11568]
 gi|328847265|gb|EGF96827.1| PPIC-type PPIASE domain protein [Brevundimonas diminuta ATCC 11568]
          Length = 313

 Score = 96.7 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/306 (10%), Positives = 76/306 (24%), Gaps = 43/306 (14%)

Query: 18  TYFVLIIFCIVPIVSY------KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
            + V++    + + +        +   + R+   +N   +   D+               
Sbjct: 10  LFLVVVAGLALGVAACGRGGDEAAPEKNDRVVARVNDRAVWASDVR-------------- 55

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
             +   Q LI E        +         V+   +             ++    Q    
Sbjct: 56  -REAVAQGLIGEDDPLDASSELFRRVMDEVVDQKLLAAEAERRGLDSSPAAQRRLQ---- 110

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                 +  + +   +V+           +E    +Q+       E  +R +L       
Sbjct: 111 -----AVRERILGDMLVEKVVSGAVSEQAVERLYAEQQRLARATEEVRVRLILAP----- 160

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH-PQFQNLL 250
                  ++              +    ++        S G   Y     L  P    L 
Sbjct: 161 -----TKEQADAVLGVLGQGAAFEAVAAQRSIDDATRYSGGDLGYSTLDVLPGPYAAALQ 215

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
            ++      P  T+ G   + + D+R              Q       +   + +++LR 
Sbjct: 216 GQTPGAVVGPIQTETGWAVLKVEDRRVETP--PTLEQARPQIVRYLTYEGVRQLLEQLRG 273

Query: 311 NAIIHY 316
            A +  
Sbjct: 274 QAEVEI 279


>gi|313888122|ref|ZP_07821796.1| putative foldase protein PrsA [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845812|gb|EFR33199.1| putative foldase protein PrsA [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 362

 Score = 96.7 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 52/323 (16%), Positives = 94/323 (29%), Gaps = 39/323 (12%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ-------- 66
            L  +  + +   +          +      + G  I   D  K  A    Q        
Sbjct: 2   FLKKFGKIAVTIALAGSLVACSGANKDAAAKVGGVEIPMADFYKSYAARVNQLTSMYGED 61

Query: 67  ----------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
                       +  L + A+ +L      KQ+ EKS IT     VN    +     G  
Sbjct: 62  VLKNKEDGKKSTDELLREQAITDLTTTEALKQDAEKSKITVSDEEVNKKLDEIKAQLG-G 120

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            E F+ FL + G+   +  + +  Q +     +          E      +    +    
Sbjct: 121 EEAFNKFLKENGLPKEYVAENMKNQMLVGKYTQEKLKELEPTEEEVKKQYEDNKDSYYKA 180

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQ 235
           +     V                K      +  L+        ++ +       + G   
Sbjct: 181 KASHILV-------------DDLKEANVLRKKILKGEDFAKLAKENSKDTGSAQNGGSLG 227

Query: 236 YLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP 294
                 +   F + + K    + + P  TQ G   I + DK+ L    A+K  + AQ   
Sbjct: 228 EFTSGQMVEAFDKEIAKMKVGDISEPITTQFGYHIIKLEDKKPLE-FDAVKDQIKAQLQQ 286

Query: 295 TKIEKHEAEYVKKLRSNAIIHYY 317
            K      EY+ K++ +A I  Y
Sbjct: 287 EK----FKEYIDKVKKDAKIKIY 305


>gi|117921098|ref|YP_870290.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           ANA-3]
 gi|117613430|gb|ABK48884.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           ANA-3]
          Length = 621

 Score = 96.7 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/407 (9%), Positives = 91/407 (22%), Gaps = 95/407 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+       I       V++ F    + SY   + S      +NG+ IT  ++ +  
Sbjct: 1   MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYLG-SKSDVPAAEVNGDKITKAELEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     +++  ++ L+ + L  Q     G+      +  
Sbjct: 60  QSERARMEQQLGEMFAALSADERYLESIKQSVLERLVADKLIDQAAAAMGLRVSDEQIIT 119

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
                     +     + + + L + G     F+  + +      +              
Sbjct: 120 AIKSEPAFQTDGKFDNDRYQAILRQLGYQPQTFRSMMRVDMTRRQLTAALVGTEFVLPGE 179

Query: 152 -----------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS-- 186
                                  F+      + ++       +   +    +        
Sbjct: 180 AKQLAELQGQTRDIRYLVVDSAPFLANASVTDEQVKNYYDTNQGQFMSPEKVSLEYVELN 239

Query: 187 ---IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK------------------------- 218
                 +        Q    + +   +   K                             
Sbjct: 240 AADFAKDSKVTDEEAQAYYDEHKTQYVSNEKRLAAHILIGPGSDEAAAKAKAEDLAKQLD 299

Query: 219 ----LEKFASKIHDV-----SIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVE 268
                 + A    +        GK  +     + P F   L    +   +    T  G  
Sbjct: 300 NGADFAELAKANSEDTLSAEQGGKLDWFEPGVMDPSFDTALFALQKGQHSAVVKTDFGFH 359

Query: 269 YIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            I + D +         +KA + AQ    K          KL   + 
Sbjct: 360 IIKLLDVQPGTTVPFADVKAKIVAQLQEKKAVDQFYSLQSKLADTSY 406



 Score = 41.2 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 39/131 (29%), Gaps = 4/131 (3%)

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
               +     K+ +  E +R +  +   +++  A+ +   +  K     +          
Sbjct: 487 EVKADIAERLKQDQANEAARAKAQELMTQVKAGATDVSLTAKTKLGRGAQDVDAAIVGKA 546

Query: 250 LKKSQNNTTNPYVT---QKGVEYIAICDKRDLG-GEIALKAYLSAQNTPTKIEKHEAEYV 305
            +      T    T     G   IA+            L   L  +      E      +
Sbjct: 547 FQMPTPTATPVVDTVGLANGYAVIALDKVNAAESVSDELVNALKQRLNAQYSEADYRGLI 606

Query: 306 KKLRSNAIIHY 316
           + L++NA +HY
Sbjct: 607 ESLKANAKVHY 617


>gi|210634928|ref|ZP_03298375.1| hypothetical protein COLSTE_02304 [Collinsella stercoris DSM 13279]
 gi|210158557|gb|EEA89528.1| hypothetical protein COLSTE_02304 [Collinsella stercoris DSM 13279]
          Length = 417

 Score = 96.7 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/340 (8%), Positives = 100/340 (29%), Gaps = 39/340 (11%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRI------------RTTINGEVITDGDISKRIAL 62
            +    + I   ++ + +     + + +              T+NG  I +  ++++I  
Sbjct: 43  KIVLVAIGIAAMLLSVSAMACSGVLNEVQSKEDYKLTGGVAATVNGVNIKEDSVTEQIMS 102

Query: 63  LKLQ----------------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF 106
           ++                         +  +  ++ + L  Q  +  GI      ++  +
Sbjct: 103 MRQSAYESDKDWATYLSQQGMTPETYRENVIDSIVRQYLLVQAEKDYGIKVTQEDLDKAW 162

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
            +     G   + F   + + G     + + +        + +          + +I A 
Sbjct: 163 KEAVEGNGGDEDAFVETISQFGFTKETYLENIKSSLAQQKL-REKVAGVKKPSDEDIVAY 221

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK--DCNKLEKFAS 224
             +  +          +LF + ++  + +    +        +L   +       EK++ 
Sbjct: 222 LNENLSTYNDARRSSHILFKVAEDATEEERAKVEAEAQKVLDKLNAGEIEFAKAAEKYSE 281

Query: 225 KIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDL----- 278
                + G   +   +    ++Q+     S    +    T  G   I    + ++     
Sbjct: 282 DGSAKNGGDVGWDKLTTFVTEYQDALSGLSDGQMSGLVKTTYGYHIIKCTGQFNVQTVSS 341

Query: 279 --GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                  ++  ++ +   T   +  +E++ +    A I  
Sbjct: 342 IDEVPEGIRDAIAERIKTTAESEKYSEWLTEYTEKADIKI 381


>gi|184157913|ref|YP_001846252.1| parvulin-like peptidyl-prolyl isomerase [Acinetobacter baumannii
           ACICU]
 gi|332872750|ref|ZP_08440716.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6014059]
 gi|183209507|gb|ACC56905.1| Parvulin-like peptidyl-prolyl isomerase [Acinetobacter baumannii
           ACICU]
 gi|323517858|gb|ADX92239.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332739047|gb|EGJ69908.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6014059]
          Length = 436

 Score = 96.7 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/314 (13%), Positives = 104/314 (33%), Gaps = 20/314 (6%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAM-SSRIRTTINGEVITDGDISKRIA----LLKLQK- 67
           K L  +F      ++   S  S+A  +  +   ++  VI   D+ + +A     L+ QK 
Sbjct: 4   KHLKQFFKATTLAVLISSSMHSFAQPTDEVVAIVDNSVILKSDLEQGMAEAAHELQAQKK 63

Query: 68  ---INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS--AEDFSS 122
                  L+   + +LI+   + ++++K GI  D  ++N   ++ A  +G          
Sbjct: 64  EVPPQQYLQFQVLDQLILRQAQLEQVKKYGIKPDEKSLNEAVLKVASQSGSKSLEAFQQK 123

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
                     + +  +A       + +   M +    + ++    +  +           
Sbjct: 124 LDAIAPGTYENLRSRIAEDLAINRLRQQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHV 183

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
           +   I  +  Q    V K ++        L    N L+K ++    V      +   SD+
Sbjct: 184 IHMRISGDNPQEVQNVAKEVRSQLAQSNDL----NALKKLSTATVKVEGADMGFRPLSDI 239

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD----LGGEIALKAYLSAQNTPTKI 297
             +    +       TT+    + GV  + + +++              ++  Q +    
Sbjct: 240 PAELAARITPLQDGQTTDLISVRDGVHVLKLLERKQNEQKALVPQYQTRHILIQPSEVVS 299

Query: 298 EKHEAEYVKKLRSN 311
            ++  + +  +   
Sbjct: 300 PENAKQIIDSIYKR 313



 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 17/157 (10%), Positives = 52/157 (33%), Gaps = 3/157 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +   ++K           +T    I  +++ +    ++ I    +              +
Sbjct: 268 LKLLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLKAGEDFAILAATY 327

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           ++        G   ++    + P+F + + +      + P+ TQ G   + + DKR+   
Sbjct: 328 SNDTGSARDGGSLGWVTPGMMVPEFDKKMQEIPVGEISEPFQTQFGWHILQVTDKREKDM 387

Query: 281 E-IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                +          +       +++++R+NA +  
Sbjct: 388 THEYQERMARQILGERQFNTEIDSWLREVRANAYVEI 424


>gi|242309441|ref|ZP_04808596.1| cell-binding factor 2 [Helicobacter pullorum MIT 98-5489]
 gi|239524012|gb|EEQ63878.1| cell-binding factor 2 [Helicobacter pullorum MIT 98-5489]
          Length = 272

 Score = 96.7 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 90/311 (28%), Gaps = 49/311 (15%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK---LQKIN 69
           +K +     L       +   +++         +NG+ IT+ DI+  +  +      ++ 
Sbjct: 1   MKKMILSSALAFALFQGVSFAETF-------AKVNGDEITEKDIAALMRAMPGVSFAQLP 53

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
            + +   + + I   L  ++ +K G+    +  N                          
Sbjct: 54  QDAKSQVINQAIERKLLIEQAKKDGVEKTKDFKNAL------------------------ 89

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                        +  +V     M K    + EI       K   V+  + +        
Sbjct: 90  -------ESVKDDLALEVWMRQEMEKVRVSDSEIEKFYNDNKTKFVQPEVAKVRHIL--- 139

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                              +  L K     +  +      + G   ++    + P+F + 
Sbjct: 140 -VNSETEAKNIISDVKRAGKNSLAKFEELAKSKSKDGSAQNGGDVGWIARGQVVPEFADA 198

Query: 250 LKK-SQNNTTN-PYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYV 305
             K ++   T  P  TQ G   I + DK+         +K  +       K +++  +  
Sbjct: 199 AFKLNKGQYTQTPVKTQFGYHVIYVEDKKPTTTLALKDVKGQIEQNLRLMKFQENVKKEG 258

Query: 306 KKLRSNAIIHY 316
           ++LR  A +  
Sbjct: 259 QELRKKAKVEI 269


>gi|210623289|ref|ZP_03293706.1| hypothetical protein CLOHIR_01656 [Clostridium hiranonis DSM 13275]
 gi|210153690|gb|EEA84696.1| hypothetical protein CLOHIR_01656 [Clostridium hiranonis DSM 13275]
          Length = 333

 Score = 96.7 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/324 (11%), Positives = 93/324 (28%), Gaps = 32/324 (9%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ-------------- 66
           + +   +   +        +     +NG  IT G     + + K                
Sbjct: 3   IALAALMSFSLVACKQKDLNETVADVNGTKITLGQYEFMLKMNKDSVESNIGGADKWDEK 62

Query: 67  -----KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
                    + +++ + ++I   L  Q  EK G+    +          +    S E+  
Sbjct: 63  DQTGVSYKDKYKRLVLDQMINTELLAQNAEKEGLKPT-DKEIQASYNDLKTYVNSDENLK 121

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
              ++ GI D   K+   I  +     +  +  +            + +      E    
Sbjct: 122 GAAEELGINDEFLKEQAKISLLIQKSQEKFYKEEKVTDAEMKKYYDEHIDEYKKDEVEAS 181

Query: 182 TVLFSIPDNKL-----QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQ 235
            +L    D++       +Q   + + K   +            +K++       + G   
Sbjct: 182 HILIKTTDDQNKPLPEADQKKAKAKAKKVLKEVKAGGDFAELAKKYSQDPGSAANGGALG 241

Query: 236 YLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDK-RDLGGEIALKAYLSAQNT 293
              +  +  +F++          ++   T  G   I + D+ ++       KA +  +  
Sbjct: 242 AFGKGMMVQEFEDAAFGMEPGEVSDLVKTDFGYHIIKVTDRIKETTSFEEAKAGIKEEIL 301

Query: 294 PTKIEKHEAEYVKKLRSNAIIHYY 317
             K  +     +  L+  A I  +
Sbjct: 302 KNKYGEK----IAALQKKAKIEKF 321


>gi|293375521|ref|ZP_06621798.1| peptidylprolyl isomerase PrsA1 family protein [Turicibacter
           sanguinis PC909]
 gi|325840213|ref|ZP_08166980.1| peptidylprolyl isomerase PrsA1 family protein [Turicibacter sp.
           HGF1]
 gi|292645861|gb|EFF63894.1| peptidylprolyl isomerase PrsA1 family protein [Turicibacter
           sanguinis PC909]
 gi|325490361|gb|EGC92686.1| peptidylprolyl isomerase PrsA1 family protein [Turicibacter sp.
           HGF1]
          Length = 239

 Score = 96.7 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/277 (11%), Positives = 82/277 (29%), Gaps = 42/277 (15%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS 99
           S++   +    IT+  +++ I  L+ Q+      +   Q+L+ E + +Q + +  I    
Sbjct: 2   SKVLAKVKNYEITEEMLNETIDALRAQQNINLTTEEQKQDLLDELVARQLVVEDAI---- 57

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
                                     + G+ +    Q L  + I+   +   F       
Sbjct: 58  --------------------------ESGLTETEEFQKLYREFIFQHSIGQMF-KTINVT 90

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
           + E  A   + ++    E +    +              + + +D               
Sbjct: 91  DAECEAYYNENQDQFKEETVRAAHILVDE----------EAKAEDLLNQINEGADFHQLA 140

Query: 220 EKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL 278
            + +S       G         + P+F+      +    +    +Q G   I + DK++ 
Sbjct: 141 SEHSSCPSGARGGDLGDFGRGQMVPEFEQAAFALNIGEISGVVKSQFGYHLIKLLDKKET 200

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                +   +       K  +  + + + L+S   + 
Sbjct: 201 VPFTDVLPQIKQYLVTKKQNEMYSAFTQGLKSKYTVE 237


>gi|126725343|ref|ZP_01741185.1| PPIC-type PPIASE domain [Rhodobacterales bacterium HTCC2150]
 gi|126704547|gb|EBA03638.1| PPIC-type PPIASE domain [Rhodobacterales bacterium HTCC2150]
          Length = 407

 Score = 96.7 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 92/263 (34%), Gaps = 3/263 (1%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    V+    I P     + +       T++   +T  +I +R A L + +  G + K 
Sbjct: 5   IKKILVIGALLIAPAQISLAQSNPFAAAVTVDNRAVTYFEIEQRAAFLDVLRAPGNVLKT 64

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           A + L+ E L+    +  GI  +   +     + A+   L   +F   + + GI    F+
Sbjct: 65  ARETLVNERLQLNAAQSLGIQINQEELAVGMAEFAKRANLKTAEFIKAIGQDGIEPETFQ 124

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
            ++     W  +V+N F+ +    E EI               L+  ++    + +    
Sbjct: 125 DFVRAGLTWRKLVQNRFVGRAQVSEDEIDRALALSSRKGGARVLLSEIVLPARNPEEA-- 182

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQ 254
              +    + +++        +    ++      + G+  +L  ++L P    + L    
Sbjct: 183 EASKNLAAELKDTIKTQSAFESAARTYSVSGSAANGGRITWLPLANLPPSIVPVLLTLKP 242

Query: 255 NNTTNPYVTQKGVEYIAICDKRD 277
              ++    +  +    +   ++
Sbjct: 243 GEVSDTVPVENAISMFQVRGLQE 265



 Score = 39.3 bits (89), Expect = 0.71,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 252 KSQNNTTNPYVTQKGVEYIAIC-DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
             +N  +       G   + +    R        +  + A     +IE +   Y++ LR+
Sbjct: 341 MDKNEISTSLRRNNGTALLFVMMCGRTPELTEGSRDEMRASLINRRIETYANNYLEDLRA 400

Query: 311 NAII 314
           ++II
Sbjct: 401 DSII 404


>gi|260428957|ref|ZP_05782934.1| ppic-type ppiase domain protein [Citreicella sp. SE45]
 gi|260419580|gb|EEX12833.1| ppic-type ppiase domain protein [Citreicella sp. SE45]
          Length = 282

 Score = 96.7 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/288 (10%), Positives = 81/288 (28%), Gaps = 50/288 (17%)

Query: 31  VSYKSWAMSSRIRTTINGEVITDGD---ISKRIALLKLQKINGELEKIAVQELIVETLKK 87
            +         +  T+NG+ IT G    I  ++     Q  +  L    + +++ +T+  
Sbjct: 20  PAQAEEMDLDSVVATVNGQDITLGHMLVIRAQLPEQYQQLGDEVLWDGILDQIVQQTVLA 79

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           Q+                                    ++               +  +V
Sbjct: 80  QDDR---------------------------------AEETKRVTLSLDNERRSLMAAEV 106

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           V++       +  ++   + +       +E+    +L              ++  +   E
Sbjct: 107 VQSIANDAVSDEAVQAAYDAEYATAELGKEFNASHIL-----------VETEEEAQALIE 155

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKG 266
                       +  ++     + G+  +     +   FQ    + S  + + P  TQ G
Sbjct: 156 ELNGGADFAELAKTKSTGPSGPNGGELGWFGPGMMVEPFQAAVEQMSVGDISAPVQTQFG 215

Query: 267 VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              I + D+R+   E      + A       ++    Y+ +    A +
Sbjct: 216 WHVIKLNDERNK--EAPQLEEVRADIELKLQQEAVQNYIDEKLGAAEV 261


>gi|325526358|gb|EGD03958.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           TJI49]
          Length = 287

 Score = 96.7 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 77/286 (26%), Gaps = 30/286 (10%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSG 94
           + A    +        +T  DI+  +  L                         E  ++ 
Sbjct: 13  AVAAQDDVIANAAQASVTQSDIATLLKSLG------------------------EEGRTR 48

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
           +  D   ++           + AE  +   DKQ       +Q      +   +   +   
Sbjct: 49  LAADPAAMDQVVRATLAQKAVLAEAKAKGWDKQADVQAAIEQARRDIIVRSYLASVNAPP 108

Query: 155 KYGNLEMEIPANKQKMKNITVREY--LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
                + EI     + +          +  +  ++P N         ++      SR R 
Sbjct: 109 ADYPSDAEIQTVYDQNRAAFTAPRALHVAQIYIAVPPNADAATVDKARKQAADLASRARN 168

Query: 213 PKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                  +  +       + G   ++ E  L P  +           + P  T  G   +
Sbjct: 169 GDFAALAKANSQDKASAANGGDMGFVPEPMLVPAVRQAADALKPGQVSGPIQTPTGFHVV 228

Query: 271 AICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            + D R         +K  + A     + ++    Y+ KL  NA I
Sbjct: 229 KLIDVRAAAPRPLADVKERVRAMLRAQRTQQGAQAYLAKLGGNAPI 274


>gi|294650562|ref|ZP_06727919.1| peptidyl-prolyl cis-trans isomerase SurA [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292823559|gb|EFF82405.1| peptidyl-prolyl cis-trans isomerase SurA [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 437

 Score = 96.7 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 36/311 (11%), Positives = 98/311 (31%), Gaps = 18/311 (5%)

Query: 18  TYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA----LLKLQKI----N 69
            +   ++  ++    +     +  +   ++  VI   D+ + IA     LK Q       
Sbjct: 9   IFRATVLAALISSSMHSFAQPADEVVAIVDSSVILKSDLVQGIAEAEHQLKAQNQTVPPK 68

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS--AEDFSSFLDKQ 127
             L+   + +LI+   + +++++ GI  D N++N   ++ A  +G +  +          
Sbjct: 69  QYLQMQVLDQLIIRQAQLEQVKRYGIKPDENSLNAAVLRVANQSGSNSLSAFQQKLDAIA 128

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
                + +  +A       + +   M +    + ++      +K+   +  L   V    
Sbjct: 129 PGTYENLRNRIAEDLAIGRLRQQQVMSRIKISDHDVENF---LKSPEGQAALGTQVHVLH 185

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
                 N   VQK  ++   S            K ++    V      +   S++  +  
Sbjct: 186 MRISGTNNNEVQKVAEEVRRSLATSNDPKAISSKLSTGTVTVDGADMGFRALSEIPTELA 245

Query: 248 NLLKK-SQNNTTNPYVTQKGVEYIAICDKRD----LGGEIALKAYLSAQNTPTKIEKHEA 302
             +       TT     + G   + + +++              ++  Q +         
Sbjct: 246 ARVTPLQVGQTTGLVNVRDGTHVLKLLERKQNDQRALVPQYKTRHILIQTSEVVSSDRAK 305

Query: 303 EYVKKLRSNAI 313
           + +  L +   
Sbjct: 306 QMIDSLYNRIK 316



 Score = 85.5 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 49/142 (34%), Gaps = 3/142 (2%)

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQY 236
              +T    I  +++ +    ++ I                   F++        G   +
Sbjct: 284 PQYKTRHILIQTSEVVSSDRAKQMIDSLYNRIKAGEDFSTLAATFSNDPGSARDGGNLGW 343

Query: 237 LLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL-SAQNTP 294
           +  S + P+F+ ++K+      + P+ +Q G   + + D R        +  +       
Sbjct: 344 VNASVMVPEFEKVMKEIPVGQLSEPFQSQFGWHILEVTDTRQQDMTKEAQERMARQILGE 403

Query: 295 TKIEKHEAEYVKKLRSNAIIHY 316
            + E     + ++LR+NA +  
Sbjct: 404 RQFETEVDSWTRELRANAYVEI 425


>gi|222087317|ref|YP_002545854.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Agrobacterium radiobacter K84]
 gi|221724765|gb|ACM27921.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Agrobacterium radiobacter K84]
          Length = 300

 Score = 96.7 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 74/303 (24%), Gaps = 49/303 (16%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL---KLQKINGELE 73
                   F  +    +   A    +   +    I   ++   IA L     Q  + + +
Sbjct: 7   LAAVAFATFVTLHAPVFADDAK-DPVVAKVGDVEIHQSELDLAIANLDPQLGQLPDDQKK 65

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
             A+   I   L                               A+D ++    Q      
Sbjct: 66  VAALSASIDVKLL------------------------------AKDAAAEKLDQTPDFQS 95

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
              YL  + +     K        + E++   +K+        E   R +L    D    
Sbjct: 96  HMAYLRDRELHNAYFKAHVADGITDDEVKARYDKEVAALPKQEEVHARHILVKTEDEAKA 155

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS 253
               +                     ++ ++  +    G   Y     +  +F++     
Sbjct: 156 IIKELDA-----------GKDFATLAKEKSTDPNKADGGDLGYFAHGRMVKEFEDAAFAL 204

Query: 254 Q-NNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
                T  P  +  G   I + DKR           +  Q     +     E + K + N
Sbjct: 205 PVGTYTKTPVKSDFGWHVIKVEDKRVAPP--PPFDQVKDQVRQLVMRDKYLELLNKAKQN 262

Query: 312 AII 314
             +
Sbjct: 263 TKV 265


>gi|118443543|ref|YP_877117.1| peptidylprolyl isomerase [Clostridium novyi NT]
 gi|118133999|gb|ABK61043.1| parvulin-like peptidyl-prolyl isomerase [Clostridium novyi NT]
          Length = 348

 Score = 96.7 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/344 (11%), Positives = 98/344 (28%), Gaps = 33/344 (9%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK------- 58
             ++   +  +      +      ++     A++  +   +  + IT G++         
Sbjct: 1   MKNIRKLVATVAVCVFSMSAVGCSMIEKTPEAINKTVVAKVGDKKITKGELDSNFAVKRY 60

Query: 59  ----------------RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
                           ++     Q     ++++A QE + +  +K  +          T 
Sbjct: 61  EEQFKAQYGDKYAENPQVKEQLKQVKVATVQQMAAQEALKQEAEKLGLVPKEAELKKETD 120

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                        S E+F   L   G     F+  +    I   + +N+        E E
Sbjct: 121 KKIQEMKKEQNIKSNEEFEKMLKASGFTKEGFESLVRDNIILEKL-QNELTKNVKVDEKE 179

Query: 163 IPANKQKMKNITVREYLI----RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
           +    +  K+   ++             +     ++    +  IK  +E   +  +    
Sbjct: 180 MQKYYETHKDKYPKDVKNPTKVHLAHIILQPKSQEDLAKCESEIKSIKEELNKGAEFSVL 239

Query: 219 LEKFASKIHDVSIGKAQYLL---ESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK 275
            +K++        G    +            +  L       + P  TQ G   I +  K
Sbjct: 240 AKKYSQDGSKEKGGDLGTVPTVDSGFDEQFMEAALPLKDGQISEPVKTQFGYHIIKMIKK 299

Query: 276 --RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
             +       +K  ++      K  K   +  K+++ NA +  +
Sbjct: 300 EVKPCKTFAEVKNEINKFLLEEKKGKIIKDKFKQIQDNAKVKVF 343


>gi|56479153|ref|YP_160742.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aromatoleum
           aromaticum EbN1]
 gi|56315196|emb|CAI09841.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aromatoleum
           aromaticum EbN1]
          Length = 260

 Score = 96.7 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 72/284 (25%), Gaps = 47/284 (16%)

Query: 36  WAMSSRIRTTINGEVITDGDISKRIALLKLQKING--ELEKIAVQELIVETLKKQEIEKS 93
            A ++    T+NG  I    +   I     Q      EL + A ++L+   +  QE  + 
Sbjct: 20  AAGAATPVATVNGAPIPSSRMDVMINEQHAQGAPDGAELREAAREQLVRLEVLAQEAARK 79

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
           GI                                               +    +++   
Sbjct: 80  GIDKKPEIQAQ------------------------------MDLARQGVLIRAYMQDFVK 109

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                        +     +  +EY  R +L              ++  K          
Sbjct: 110 TNPATDADLRKEYESIKGQMGSKEYKPRHIL-----------VETEEEAKAIIGKLRAGE 158

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIA 271
           K                 G+  +         F + ++K  +   +  P  +  G   I 
Sbjct: 159 KFEALATASKDPGSKDKGGELGWSNPGMFVKPFSEAMVKLEKGQYSATPVKSDFGYHVIQ 218

Query: 272 ICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           + D RDL         +  Q      +K   ++V  LR+ A + 
Sbjct: 219 LDDVRDLKA--PAFEEVKPQLEQRLQQKKIEKHVADLRAKAKVE 260


>gi|332992311|gb|AEF02366.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas
           sp. SN2]
          Length = 630

 Score = 96.3 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 49/408 (12%), Positives = 104/408 (25%), Gaps = 96/408 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++         +     +++ F    + SY   +  +    T+NGE I+  ++ +  
Sbjct: 1   MLERIREGSQGPWAMAIIALIVLSFVFAGVGSYL-TSSGTTAVATVNGEEISAQELERGY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + Q  +                 +  +  +  LI E L +Q+ ++ G+      +  
Sbjct: 60  QNQRAQMESQFGESIAQLFSSEQYLSDFRRNVLDRLIAEKLIQQQAQEMGLRVSDAQIRE 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
             VQ            + F + L + G     F+ YL IQ     +              
Sbjct: 120 TIVQMPEFQFGGQFDNDRFQTILRQNGFQVADFRDYLRIQMTQNQLAAALTNSEFALPGE 179

Query: 149 --------------------KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT------ 182
                                  F       E +I             E  I+       
Sbjct: 180 AERANALQLQTRDAKYVMIDSASFAESVEVTEDDIAEYYNANITAFDTEEQIKLAYVSLT 239

Query: 183 -------------VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA------ 223
                         + +  DN L   G  ++R             D  K +  A      
Sbjct: 240 VEDVKSRVSVDDEAVRTYYDNNLSGYGKEEERRVSHILIESGDDADAAKAKTQALLDQLN 299

Query: 224 --------------SKIHDVSIGKAQYLLESDLHPQFQNLLKK--SQNNTTNPYVTQKGV 267
                               + G   ++    +   F   +    +  + T+   T+ G 
Sbjct: 300 DGADFAELAENNSDDTFSAENGGDLDFITPGMMDDAFDEAVFSLANVGDYTDVVETEFGF 359

Query: 268 EYIAICDKRDLGG--EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             I + + ++        ++A +       K  +   E    +   A 
Sbjct: 360 HIIKLTELKEAQVQAFEDVEAEIRETLLTDKALEEFFELQNTMAEIAF 407


>gi|90416122|ref|ZP_01224055.1| peptidyl-prolyl cis-trans isomerase D [marine gamma proteobacterium
           HTCC2207]
 gi|90332496|gb|EAS47693.1| peptidyl-prolyl cis-trans isomerase D [marine gamma proteobacterium
           HTCC2207]
          Length = 618

 Score = 96.3 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/395 (10%), Positives = 93/395 (23%), Gaps = 86/395 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M      ++   I       + I+F    I S       +     +NGE +T+  + + I
Sbjct: 1   MLDSFRHNMKG-IAFGIVILIAIVFAFSGIGSLSMSGSGADTAVIVNGEKVTELSVLRAI 59

Query: 61  ALLKLQKINGE------------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
           +  K + +N              +    V++LI   L  Q  +  G+   S T +   + 
Sbjct: 60  SSEKRRILNENEGLDASLLEDELIRPQVVEQLIGRRLLSQAAKSGGMGISSRTTSKLLLG 119

Query: 109 HARNT----GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML---------- 154
                        + +   +  QG     F + L    +    V+               
Sbjct: 120 TPAFLSEDGRFDQDLYLYTIRAQGYTSGTFLEMLRDDLLIEQYVRGFVASGFVTASELDL 179

Query: 155 -----------------------KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                                       + +I    +           +      +    
Sbjct: 180 IASITEQQRSYYYLTLPLQPAVDAVDLSDEQIATYYEDNNQRYQAPEQVIIDYIELNPEL 239

Query: 192 LQNQGFVQKRIK---------------------------------DAEESRLRLPKDCNK 218
                 V +                                    +  E           
Sbjct: 240 FSATQSVAEEQILARYEEQRDSLESTTSRQAAHILLAQPSDDVLAEINEKLAAGEAFEAL 299

Query: 219 LEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR 276
            ++++  +      G   Y         F+  L+       + P  T  G+  I + D +
Sbjct: 300 AKEYSEDVGSADFGGDLGYTSGDTFPESFETALEALQVGEVSPPVSTDSGIHLIKLLDIQ 359

Query: 277 DLGGEIAL-KAYLSAQNTPTKIEKHEAEYVKKLRS 310
           +   +    +A +  +      +    E +  L+ 
Sbjct: 360 EKIVDFDSERARIEQELVTELTDVWLVEKLANLKE 394


>gi|293608269|ref|ZP_06690572.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828842|gb|EFF87204.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 441

 Score = 96.3 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/314 (12%), Positives = 102/314 (32%), Gaps = 20/314 (6%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAM-SSRIRTTINGEVITDGDISKRIA----LLKLQK- 67
           K L  +F       +   S  S+A  +  +   ++  VI   D+ + +A     L+ QK 
Sbjct: 9   KHLKQFFKATTLAALISSSMHSFAQPADEVVAIVDNSVILKSDLQQGMAEAAHELQAQKK 68

Query: 68  ---INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS--AEDFSS 122
                  L+   + +LI+   + ++++K GI  D  ++N   ++ A  +G          
Sbjct: 69  EVPPQQYLQFQVLDQLILREAQLEQVKKYGIKPDEKSLNEAVLKVASQSGSKSLEAFQQK 128

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
                       +  +A       + +   M +    + ++    +  +           
Sbjct: 129 LDAMAPGTYESLRNRIAEDLAISRLRQQQVMSRIKISDQDVENFLKSPQGQAALGNQAHV 188

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
           +   I  +  Q    V + ++        +    N L+K ++    V      +   SD+
Sbjct: 189 IHMRISGDNAQEVQSVAQEVRSKLAQSNDI----NALKKLSTANVKVEGADMGFRPLSDI 244

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD----LGGEIALKAYLSAQNTPTKI 297
             +    +       TT+    + GV  + + +++              ++  Q +    
Sbjct: 245 PAELAARITPLQDGQTTDLVSVRDGVHVLKLLERKQNEQKALVPQFQTRHILIQPSEVVT 304

Query: 298 EKHEAEYVKKLRSN 311
            ++  + +  +   
Sbjct: 305 LENAKQIIDNIYKR 318



 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/270 (10%), Positives = 88/270 (32%), Gaps = 6/270 (2%)

Query: 50  VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
            I+D D+   +   + Q   G    +    +  +  ++ +     +       N      
Sbjct: 163 KISDQDVENFLKSPQGQAALGNQAHVIHMRISGDNAQEVQSVAQEVRSKLAQSND-INAL 221

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
            + +  + +   + +  + + D   +    I  +      +   ++ G   +++   KQ 
Sbjct: 222 KKLSTANVKVEGADMGFRPLSDIPAELAARITPLQDGQTTDLVSVRDGVHVLKLLERKQN 281

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HD 228
            +   V ++  R +L    +         ++ I +  +              +++     
Sbjct: 282 EQKALVPQFQTRHILIQPSEVVTLENA--KQIIDNIYKRLKAGQDFATLAATYSNDTGSA 339

Query: 229 VSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE-IALKA 286
              G   ++    + P+F + + +      + P+ TQ G   + + DKR+        + 
Sbjct: 340 RDGGSLGWVTPGMMVPEFDKQMQEIPVGEISEPFQTQFGWHILQVTDKREKDMTHEYQER 399

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                    +       +++++R+NA +  
Sbjct: 400 MARQILGERQFNTEIDSWLREVRANAYVEI 429


>gi|253681183|ref|ZP_04861984.1| peptidil-prolyl cis-trans isomerase [Clostridium botulinum D str.
           1873]
 gi|253562619|gb|EES92067.1| peptidil-prolyl cis-trans isomerase [Clostridium botulinum D str.
           1873]
          Length = 246

 Score = 96.3 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/285 (10%), Positives = 78/285 (27%), Gaps = 47/285 (16%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKI----NGELEKIAVQELIVETLKKQEIEKS 93
           M +++   +NG+ IT+ DI   I     ++       +  K  + +L+          K 
Sbjct: 1   MENKVLAKVNGKEITERDIEVAIKRFPQERQAYFAGEQGRKQLLDQLVA-FELFYAYGKE 59

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
                +           ++                                  +  N  +
Sbjct: 60  NELDKTQEFIDGIEIMKKD------------------------------ALTQMSVNKVL 89

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
            +    + E+       K   V    +      + + +L N+   + +            
Sbjct: 90  SEVKVTDKEVEDYYTANKKNFVVGETVSAKHILVDNEELANKIAEKIK---------DGM 140

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAI 272
                 +++++       G         + P+F+           + P  TQ G   I +
Sbjct: 141 SFDEAAKEYSTCPSKAQGGNLGRFGRGQMVPEFEEAAFNLEIGKLSEPVKTQFGYHLIEV 200

Query: 273 CDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            DK +        +K  + A     +       +V++L++   + 
Sbjct: 201 EDKNEATEKSFNEVKDMIKANLIQQRQTAKYTTFVEELKNKYNVE 245


>gi|325121999|gb|ADY81522.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 436

 Score = 96.3 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/314 (12%), Positives = 102/314 (32%), Gaps = 20/314 (6%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAM-SSRIRTTINGEVITDGDISKRIA----LLKLQK- 67
           K L  +F       +   S  S+A  +  +   ++  VI   D+ + +A     L+ QK 
Sbjct: 4   KHLKQFFKATTLAALISSSMHSFAQPADEVVAIVDNSVILKSDLQQGMAEAAHELQAQKK 63

Query: 68  ---INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS--AEDFSS 122
                  L+   + +LI+   + ++++K GI  D  ++N   ++ A  +G          
Sbjct: 64  EVPPQQYLQFQVLDQLILREAQLEQVKKYGIKPDEKSLNEAVLKVAGQSGSKSLEAFQQK 123

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
                       +  +A       + +   M +    + ++    +  +           
Sbjct: 124 LDAMAPGTYESLRGRIAEDLAISRLRQQQVMSRIKISDQDVENFLKSPQGQAALGNQAHV 183

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
           +   I  +  Q    V K ++        +    N L+K ++    V      +   SD+
Sbjct: 184 IHMRISGDNAQEVQSVAKEVRSKLAQSNDI----NALKKLSTANVKVEGADMGFRPLSDI 239

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD----LGGEIALKAYLSAQNTPTKI 297
             +    +       TT+    + GV  + + +++              ++  Q +    
Sbjct: 240 PTELAARITPLQDGQTTDLVSVRDGVHVLKLLERKQNEQKALVPQFQTRHILIQPSEVVT 299

Query: 298 EKHEAEYVKKLRSN 311
            ++  + +  +   
Sbjct: 300 LENAKQIIDNIYKR 313



 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/270 (10%), Positives = 88/270 (32%), Gaps = 6/270 (2%)

Query: 50  VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
            I+D D+   +   + Q   G    +    +  +  ++ +     +       N      
Sbjct: 158 KISDQDVENFLKSPQGQAALGNQAHVIHMRISGDNAQEVQSVAKEVRSKLAQSND-INAL 216

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
            + +  + +   + +  + + D   +    I  +      +   ++ G   +++   KQ 
Sbjct: 217 KKLSTANVKVEGADMGFRPLSDIPTELAARITPLQDGQTTDLVSVRDGVHVLKLLERKQN 276

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HD 228
            +   V ++  R +L    +         ++ I +  +              +++     
Sbjct: 277 EQKALVPQFQTRHILIQPSEVVTLENA--KQIIDNIYKRLKAGQDFATLAATYSNDTGSA 334

Query: 229 VSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE-IALKA 286
              G   ++    + P+F + + +      + P+ TQ G   + + DKR+        + 
Sbjct: 335 RDGGSLGWVTPGMMVPEFDKKMQEIPVGEISEPFQTQFGWHILQVTDKREKDMTHEYQER 394

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                    +       +++++R+NA +  
Sbjct: 395 MARQILGERQFNTEIDSWLREVRANAYVEI 424


>gi|163743876|ref|ZP_02151247.1| PPIC-type PPIASE domain protein [Phaeobacter gallaeciensis 2.10]
 gi|161382817|gb|EDQ07215.1| PPIC-type PPIASE domain protein [Phaeobacter gallaeciensis 2.10]
          Length = 172

 Score = 96.3 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 15/120 (12%), Positives = 39/120 (32%), Gaps = 3/120 (2%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS-QN 255
             ++   D                + ++     + G+  +  +  + P+F+  +      
Sbjct: 35  ETEEDAADIRAELDAGADFATLARERSTGPSGPNGGELGWFSKGRMVPEFEEAVLVMGAG 94

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           + ++P  TQ G   I + D+R           +  +      ++   + V  L + A I 
Sbjct: 95  DVSDPVQTQFGWHVIKLNDRRTSAA--PTFDEVREELATQMRQEAVEDRVLSLTTAATIE 152


>gi|83644983|ref|YP_433418.1| parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC
           2396]
 gi|83633026|gb|ABC28993.1| Parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC
           2396]
          Length = 628

 Score = 96.3 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 46/403 (11%), Positives = 102/403 (25%), Gaps = 93/403 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +    I  +    +++ F    + S            ++NGE IT     ++ 
Sbjct: 1   MLQNIRDNAQGVIAKVIVGLIVMTFAFFGVESIVGGLSGEPEVASVNGEPITKSQFERKF 60

Query: 61  ALLKLQK-------------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
              +LQ                 +L K  + E I   ++ Q   ++G      T+N F  
Sbjct: 61  ERNRLQAIAGMGENYDPSKIDENKLRKTTLDEFITREVQLQAAREAGFAVSDATINNFIT 120

Query: 108 QH---ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK--------------- 149
           Q     ++       F   L + G+    F++ L+ + +   +                 
Sbjct: 121 QWPMAQKDGKYDNNQFMEALRRIGMRPMEFRKELSDELLVGQLQSGIAQTSFVIGEELNE 180

Query: 150 ------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                              D        + E        K+  +    I      +  + 
Sbjct: 181 LLRMERQTRSFSYYRLNAEDVAKDIEISDAEAEEYYNSNKDEFILPERIIVNYIELTRDA 240

Query: 192 LQNQGFV---------------------QKRIKDAEESRLRLPKDCNKLEKFASKIHDVS 230
           L  +  V                     ++      E+   +  +    +    +     
Sbjct: 241 LVGRAEVSDEEVSERYEQEKKEFLPSEQRRASHILIETSDDVSDEQALAKAQEVEQKLKD 300

Query: 231 IGK--------------------AQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEY 269
            G                       Y  +      F+      +  + + P  T+ G   
Sbjct: 301 GGDFAALAKEFSSDLGSANDGGDLGYAQKGAFVEPFEEKLFSMNVGDISEPVKTEYGYHI 360

Query: 270 IAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
           I + D +  ++      K  +  +    K +    E   KL+ 
Sbjct: 361 IKLNDVKAVEMPSLEESKDRIVKELQEQKADSLFVEVNAKLKD 403



 Score = 37.0 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 2/72 (2%)

Query: 246 FQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAE 303
           F+    +        + T  G   I + + +D   +   A +            ++   +
Sbjct: 555 FKLPKPEEGKPVIEKFETNFGYAVIVLNEVKDNTEDLSEAEQKTYRTFMASRNGQREYND 614

Query: 304 YVKKLRSNAIIH 315
           Y +K++  A I 
Sbjct: 615 YNEKIQDAAEIE 626


>gi|89073234|ref|ZP_01159764.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium sp.
           SKA34]
 gi|89050944|gb|EAR56408.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium sp.
           SKA34]
          Length = 630

 Score = 96.3 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/406 (10%), Positives = 101/406 (24%), Gaps = 94/406 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++    +     +    ++  F    + SY +      +   +N + I+     +  
Sbjct: 1   MMERLREGANSIWVKIILSLIIFSFVFAGVGSYLAGGNEQ-VAAKVNDKEISQRAFEQAY 59

Query: 61  ----------------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
                            L+       +     ++ ++ + L +Q   + G+      V  
Sbjct: 60  QNQRNQMQQRLGDYFSKLMGDPAYVQQFRNSVLERMVNDELIEQRATELGLGVSDAQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
             V           + E ++  L + G     F + +    +    +             
Sbjct: 120 AIVAMPAFQVDGVFNNEQYNLTLRRAGFSPEQFAESIRKDMLRQQFLSALEGSDFALNNE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                 DF  K    + E  A   K K    R   ++     + 
Sbjct: 180 LNELRKLESQERVVRTLKLNLADFTDKVTVTDKEAKAYYDKNKTQFTRPAQVKVSYIELS 239

Query: 189 DNKLQNQGFVQKRIKDAEESRLR------------------------------------L 212
           D  L N   +  +  +A  +  +                                     
Sbjct: 240 DKNLVNNIKITDKETEAYYNEHKSKYSTAEKIQVSHILVKGDSDTSKAKAEALLAELKGG 299

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK--SQNNTTNPYVTQKGVEY 269
               +  +K +         GK  +  +  + P F+          + +    +  G   
Sbjct: 300 ANFADVAKKSSDDTFSAKDGGKLDWFGKGVMDPAFEEAAFSLAKPGDMSGLVKSSFGYHI 359

Query: 270 IAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           I +    +  +     +KA + A+    ++ +   +   KL   A 
Sbjct: 360 ILLDGIEEPKVKPFADVKASIVAELQEQQVAEQFYKLQSKLAETAF 405


>gi|229816170|ref|ZP_04446480.1| hypothetical protein COLINT_03217 [Collinsella intestinalis DSM
           13280]
 gi|229808178|gb|EEP43970.1| hypothetical protein COLINT_03217 [Collinsella intestinalis DSM
           13280]
          Length = 401

 Score = 96.3 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/348 (10%), Positives = 107/348 (30%), Gaps = 40/348 (11%)

Query: 7   TSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRI------------RTTINGEVITDG 54
             LS   K++    + I+  ++ + +     + + +              T+NG  I + 
Sbjct: 31  EKLSKTAKIVLVA-IGILAMLLSVTAMACSGVLNEVNKEEPYELTGGVAATVNGVNIKED 89

Query: 55  DISKRIALLK----------------LQKINGELEKIAVQELIVETLKKQEIEKSGITFD 98
            ++ +I  L+                         +  +  +  + L  +  ++ GIT  
Sbjct: 90  TVTNQIMSLRTGSYDKDADWAAYLASQGLTPESYRENVIDGIARQYLLVEAEKEYGITVS 149

Query: 99  SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGN 158
              ++  +    +N G   + F   +++ G   + + + +        + K++       
Sbjct: 150 QEDLDKAWKDAVKNYGGDEKAFVEMIEQVGFTKDTYLENIKSSLAQQKL-KDEVAPAEKP 208

Query: 159 LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK--DC 216
            + EI     +  +          +LF + ++    Q    +        ++   +    
Sbjct: 209 SDEEIITYLNENLSTYNGARRSSHILFKVAEDATDEQRAKVEAEAQKVLDQINAGEIEFA 268

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDK 275
              +K++        G   +   +   P++Q+ L K   +  +    T  G   I   + 
Sbjct: 269 KAAKKYSEDSSADKGGDVGWDKLTTFVPEYQDALSKLGVDQVSGLVKTTYGYHIIKCTEL 328

Query: 276 RDL-------GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            ++            ++ Y+S       +     E++      A I  
Sbjct: 329 FEVQAVTSLDEVPEGIRTYVSDMLESQAVATAYGEWLTDYTEKAEIKI 376


>gi|89052781|ref|YP_508232.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Jannaschia sp. CCS1]
 gi|88862330|gb|ABD53207.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Jannaschia sp. CCS1]
          Length = 301

 Score = 96.3 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 30/281 (10%), Positives = 79/281 (28%), Gaps = 50/281 (17%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKL---QKINGELEKIAVQELIVETLKKQEIEKSG 94
            +  +  T+NG  IT G +     +L     Q  +  L +  +++LI + +         
Sbjct: 47  SAETVMATVNGHDITVGHLIAMRQMLPAEYQQLPDEVLFEGMLEQLIQQQVLA------- 99

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
                                                    +      +    + +  M 
Sbjct: 100 --------------------------DVAEANVTREMELLLENEQRALMAATYMDDIAMA 133

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
           + G  E++   ++   +     EY    +L              ++  ++   +      
Sbjct: 134 ELGEEELQAAYDEAYGEVEPTVEYNAAHIL-----------VEGEEDAQNLLTALGEGAD 182

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAIC 273
                 + +      + G   +  E  + P+F+  + +      ++P  TQ G   + + 
Sbjct: 183 FAELAAENSIGPSGPNGGALGWFTEGMMVPEFEAAVMELEPGEVSSPVQTQFGWHVVLLN 242

Query: 274 DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           + R+          +  +   T         +++L + A I
Sbjct: 243 ETREQAA--PTLDDVRPELEETIRRGRVDARLEELMAEAEI 281


>gi|317403066|gb|EFV83601.1| peptidyl-prolyl cis-trans isomerase D [Achromobacter xylosoxidans
           C54]
          Length = 656

 Score = 96.3 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 43/408 (10%), Positives = 104/408 (25%), Gaps = 98/408 (24%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + +    +++ +    ++  F +V I  Y+S+        T+ G+ I+  +  +  
Sbjct: 1   MFEFIRSH-RRWMQFILLLLIVPSFFLVGIQGYESFMRKEPELATVAGQPISRAEFDQAH 59

Query: 61  ALLKLQKIN-------------GELEKIAVQELIVETLKKQEIEKSGITFDSN---TVNY 104
                Q                 +L +  + +LI + L       +  +           
Sbjct: 60  RNQLEQYRQRLGAQFDPAVIDTPQLREALLNQLINQRLLANVAVDNRFSVSDETLRNTIA 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK--------------- 149
              +   N   S E +   L  QG+    F+  L        V++               
Sbjct: 120 AIPEVQDNGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVARVLEPVGQSARAPAEVVAS 179

Query: 150 ------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                              DF  +      +I A     K        ++     + +  
Sbjct: 180 LETALTQQRTVQLRRFAAADFRSQVTVTPADIQAWYDANKQQLQVPEQVQVQYLVLNEAA 239

Query: 192 LQNQGFVQKRI--KDAEESRLRLPKDC--------------------------------- 216
                 V+        E+++ R  +                                   
Sbjct: 240 ATEGVQVKDEDLTSYYEQNKNRFGQPERRRASHIMIEVPAGASEDARKAARAKAEALATQ 299

Query: 217 -----NKLEKFASKIH-----DVSIGKAQYLLESDLH-PQFQNLLKKSQNNTTNPYVTQK 265
                 +  + A K         + G   +L    L  P  + +  +S++  +    +  
Sbjct: 300 AAANPAQFAELARKNSQDAGSAANGGDLGWLAPGMLSGPLEKAIFSQSKDQVSGVVESPS 359

Query: 266 GVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           G   + + + +         +K  ++A+          +E   +L   
Sbjct: 360 GFHVVKVTEIQPAAIKPLAEVKDQITAEVRKQLAAVRFSEMASQLNKQ 407


>gi|325274293|ref|ZP_08140404.1| periplasmic folding chaperone [Pseudomonas sp. TJI-51]
 gi|324100576|gb|EGB98311.1| periplasmic folding chaperone [Pseudomonas sp. TJI-51]
          Length = 623

 Score = 96.3 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 48/402 (11%), Positives = 117/402 (29%), Gaps = 89/402 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++++  +    +    A  S+    +NG+ I+  ++S+  
Sbjct: 1   MLQNIRDNSQGWIAKSIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAA 60

Query: 61  ALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF- 106
            + + Q +                L + A++ LI   L  Q  E +   F    ++    
Sbjct: 61  DMQRRQLMQQLGKDFDPALLDEKLLREEALKGLISRKLLLQGAEDAKFAFSDAALDQVIL 120

Query: 107 --VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML---------- 154
              +   +   SA+ F   + + G G   F+  LA + +   +                 
Sbjct: 121 QTPEFQVDGKFSADRFDQVIRQMGYGRMQFRDMLAEEMLIGQLRTGLAGSSFVTDQQVDA 180

Query: 155 -----------------------KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                                  K  + E++   ++   + ++  + +I  +        
Sbjct: 181 FARLEKQTRDFASLTFKADPAAVKVSDAEVKAHYDQHAKEFMSPDQVVIDYIELKKSAYF 240

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKL-------------------------------- 219
            Q +   ++     E+    L +  +                                  
Sbjct: 241 DQVKVTDEELKAQYEKEIANLAEQRHAAHILIEVNDKVSDAQAKARAEEIEQRLAKGENF 300

Query: 220 ----EKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAIC 273
               ++F+       + G   +       P F+    K      + P  TQ G   I + 
Sbjct: 301 ATLAKEFSQDPGSAGNGGDLGFAGPGVYDPAFEEALYKLQDGQVSAPVRTQFGYHLIKLL 360

Query: 274 DKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             +  ++    +LK  L+       +E+   +  K+L+  A 
Sbjct: 361 GVQAPEVPSFASLKDKLTRDLKTPLVEQRYVDASKQLQDAAY 402


>gi|148977892|ref|ZP_01814445.1| peptidyl-prolyl cis-trans isomerse D [Vibrionales bacterium SWAT-3]
 gi|145962838|gb|EDK28110.1| peptidyl-prolyl cis-trans isomerse D [Vibrionales bacterium SWAT-3]
          Length = 621

 Score = 96.3 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/403 (8%), Positives = 95/403 (23%), Gaps = 91/403 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + SY      +     +    I  G+  +  
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYI-TGGGNNAAAKVGNTEIGRGEFEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +  +                    K  +  +I + L +Q+ E  G+    + +  
Sbjct: 60  QNERNRMQSQLGDYFAQMLADPAYVESFRKSVLDRMINDVLLEQQAESLGLRISDSQIRT 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
             ++  +         E + + L + G     F +Y+    +   +V             
Sbjct: 120 MILEMPQFQTAGQFDQEVYQAALRRAGFSAESFAEYMRRDLMRNQLVTALQGSEFVLQGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL---- 184
                                 D        + +I     +      R    +       
Sbjct: 180 IDTQSKLIAQTRDIRTVTLSVADLAKDVELTDEQIEQYYTENPLAYTRPEQAKVSYIELS 239

Query: 185 ---------------FSIPDNKLQNQGFVQKRIKDAE--------------ESRLRLPKD 215
                                 L      ++R                   +        
Sbjct: 240 AEALKSQLEVSDEEAQKYYQEHLDKYSTAEQRKVSHILVEGDDEAKAQSILDELNAGTDF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               E+ +         G   ++    + P F++     ++  +TT    +  G   I +
Sbjct: 300 ATLAEEKSDDFGSADVGGDLGWIERDVMDPAFEDAAFALQNVGDTTGLVKSDFGYHIIKL 359

Query: 273 CDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            + +  +      + A +  +           E   +L   A 
Sbjct: 360 DELKAPESQPYAEVAAEIKQELLDQHAVDQFYEMQTELEKVAF 402


>gi|331268339|ref|YP_004394831.1| parvulin-like peptidyl-prolyl isomerase [Clostridium botulinum
           BKT015925]
 gi|329124889|gb|AEB74834.1| parvulin-like peptidyl-prolyl isomerase [Clostridium botulinum
           BKT015925]
          Length = 348

 Score = 95.9 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/344 (10%), Positives = 93/344 (27%), Gaps = 33/344 (9%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK------- 58
             ++   +         +      ++     A+   +   +  + IT G++         
Sbjct: 1   MKNIRKLVATAVLCVFTMSAVGCSMIEKTPEAIKKTVVAKVGDKKITKGELDSHFGVKRY 60

Query: 59  ----------------RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
                           ++     Q      ++IA QE + +  +K ++  +         
Sbjct: 61  LDQFKQQYGENFEQNPQVKEQVKQIKIAVAKQIASQEALKQEAEKLKLVPNDQELKKEMD 120

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                          +   S L   G+  + F++ +    I   + +N+        + E
Sbjct: 121 KKIQEFKKEQNIKDDKGLDSALKMSGLQKSDFEKLIKDNIIIEKL-QNELTKNIKVDDKE 179

Query: 163 IPANKQKMKNITVREYLI----RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
           I       K+   ++             +     ++    +  IK  +E   +       
Sbjct: 180 IEKYYNTNKDKYPKDPKNPTKIHVAHIILQAKTPEDDAKAKDEIKSIKEELNKGGDFAVL 239

Query: 219 LEKFASKIHDVSIGKAQ---YLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK 275
            +K++        G       +            L       ++P  TQ G   I +  +
Sbjct: 240 AKKYSQDGSKDKGGDLGSVPTVNSGFDQDFMNAALTLKDGQISDPVKTQFGYHIIKMIKR 299

Query: 276 RDLGGEI--ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            +   +    +K  +       K  +      K+++  A I  Y
Sbjct: 300 EEAPCKTLAEVKNQVKEDILQNKKNEVIKNKFKEIQDKANIKIY 343


>gi|322437244|ref|YP_004219456.1| SurA domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321164971|gb|ADW70676.1| SurA domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 377

 Score = 95.9 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/322 (13%), Positives = 95/322 (29%), Gaps = 38/322 (11%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIAL-LKLQKINGELEKIA-------VQELIVE 83
           +      S+ +  T+NG  I   D+ K   L L   + +    + A       +++LI E
Sbjct: 47  AGCHPQHSADVMATVNGHAIMRADLDKVYNLQLGEAQQSQPSAEQADSQRLGLLKQLIDE 106

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            + +Q   K  +T  +  V+    +       + E F   L ++    +  K+ L     
Sbjct: 107 EIVQQRATKMNLTATNEEVDAKLAEMKA--PYTEEQFDGLLRERHTSVDDIKRDLRRSLT 164

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS------------IPDNK 191
              ++  +   K    + +I +   + K+          +               +  +K
Sbjct: 165 MNKLLNKEINSKVTVSDADITSYFNQHKSEFNNIETQYHIARILVTSSPAPQAGNLQGSK 224

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL---HPQFQ 247
            Q     +K+I   +          +    F+       S G    + E+ +      F 
Sbjct: 225 AQTDADAKKKILALKNRVDSGEDFGSLAMNFSEDPQTSASGGDMGSVAETQMKSNPIIFN 284

Query: 248 NLLKKSQNNTTNPYVTQK--------GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
           +L        T+              G     +  +   G     +  +  +      + 
Sbjct: 285 SLANLKPGQVTDIMPFPDPSDPKKVGGYAIFQLLSRDPAGQHDVSEPQVQQRIRQGLHDA 344

Query: 300 HEA----EYVKKLRSNAIIHYY 317
                   Y + LR +A +  +
Sbjct: 345 RSQLLKGAYYEMLRDHAKVENF 366


>gi|306820765|ref|ZP_07454390.1| peptidyl-prolyl cis-trans isomerase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551155|gb|EFM39121.1| peptidyl-prolyl cis-trans isomerase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 245

 Score = 95.9 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 72/285 (25%), Gaps = 47/285 (16%)

Query: 38  MSSRIRTTINGEVITDGDIS----KRIALLKLQKINGELEKIAVQELIVETLKKQEIEKS 93
           M ++I  TI    IT+ D+          +  Q      E   +QELI + L   + + S
Sbjct: 1   MENKILATIGDMNITEKDLDYMKKNMDKRVLSQFSGERGEYYLLQELINQKLMAIDAKTS 60

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
            +  +                                           +     V    +
Sbjct: 61  DLLNNDEFKFE-------------------------------FESMKDNFISQYVIKTVL 89

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                 + E+    +  KN       +      + D                 E      
Sbjct: 90  DSVTVSDEEVREFFETNKNAFGESETVSASHILVGDLSKAESL---------YEKIQNGE 140

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAI 272
                 ++ ++     + G   Y     +  +F+++         + P  TQ G   I +
Sbjct: 141 DFATLAKENSTCPSSANGGDLGYFGRGQMVKEFEDMAFSLEVGAVSKPVKTQFGYHLILL 200

Query: 273 CDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            DK+         +K  L       K ++     +  LR    + 
Sbjct: 201 NDKKADKPKSFEDIKDELRESLFAKKQQEAYVAKINSLREKYGVK 245


>gi|300924168|ref|ZP_07140160.1| PPIC-type PPIASE domain protein [Escherichia coli MS 182-1]
 gi|301049648|ref|ZP_07196597.1| PPIC-type PPIASE domain protein [Escherichia coli MS 185-1]
 gi|300298585|gb|EFJ54970.1| PPIC-type PPIASE domain protein [Escherichia coli MS 185-1]
 gi|300419621|gb|EFK02932.1| PPIC-type PPIASE domain protein [Escherichia coli MS 182-1]
          Length = 623

 Score = 95.9 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 104/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGGMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|330910235|gb|EGH38745.1| peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli AA86]
          Length = 623

 Score = 95.9 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/396 (9%), Positives = 102/396 (25%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                             ++  L++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                N    K    E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREAAIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ++ +  + +N   K +        +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLAGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|311280662|ref|YP_003942893.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterobacter cloacae
           SCF1]
 gi|308749857|gb|ADO49609.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterobacter cloacae
           SCF1]
          Length = 624

 Score = 95.9 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/396 (11%), Positives = 105/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  + SY     ++     +N + I        +
Sbjct: 1   MMDSLRTAANSVVLKIIFGIIIVSFILTGVSSYL-IGGNNTYAAKVNSQEIGRSQFENAV 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           A  + +                     L +  +  LI E L  Q  +  G+      V  
Sbjct: 60  ASERNRMQQQLGDRFSELAANENYMKTLRQQVLNRLIDEALLDQYAKHLGLAISDQQVKQ 119

Query: 105 FFVQ---HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF--------- 152
              Q      N     + F+  + + G+  + + Q L  Q     ++             
Sbjct: 120 AIFQTQAFQSNGKFDNDRFNGIVSQMGMTADQYAQALRNQLETQQLINAIVGTDFMLPGE 179

Query: 153 ------------------------MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                     K    + EI +  ++ KN  V     R     + 
Sbjct: 180 TEQLATLVSQQRIVREATINVDALAAKQQVSDQEISSYYEQHKNEFVSPEQFRVSYIKLD 239

Query: 189 DNKLQNQG-----------------------------FVQKRIKDAEESRLRLPKDCNKL 219
              +Q                                  +   K   ++  +        
Sbjct: 240 AAAMQETASDSDIQSYYDQHQEQFTQPERVRYSVIQTKTEADAKAVLDALSKGADFAALA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L  S    + +N   K +   +    +  G     + D +  
Sbjct: 300 KEKSADIISAKNGGDMGWLEASTTPDELKNAGLKEKGQLSGVITSSVGFLVARLDDVQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KEKPLAEVRDDIAAKVKQEKALDAYYALQQKVSDAA 395


>gi|296121100|ref|YP_003628878.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces
           limnophilus DSM 3776]
 gi|296013440|gb|ADG66679.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces
           limnophilus DSM 3776]
          Length = 354

 Score = 95.9 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/277 (12%), Positives = 75/277 (27%), Gaps = 12/277 (4%)

Query: 42  IRTTINGEVITDGDISK-RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
           I   +NG  I+   +   RI+     +      K   + L+   L ++ + +  +T    
Sbjct: 87  IVRRVNGRPISLAQVEFLRISRGITDQDAAAAHKSLTETLVDNELIREFLARQKVTVADA 146

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
            +     Q  +       D  +     G+ +  +   +     W          +    +
Sbjct: 147 DIARRKEQFIQQWKNFGYDLPAITKSWGLAEPAWTADITTPLAWY------VYSQSQIND 200

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
             I A  ++         L    LF        +    +K  +   + +         + 
Sbjct: 201 AAIAAEFKRQPARWNGTRLRARQLFLKWPAGQPDAATREKMAEIKTKIQAGQLSMEAAIR 260

Query: 221 KFASKIHDVSIGKAQYLL-ESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           +++        G   +      L     +    +       P  +  G+  I + D R  
Sbjct: 261 QYSESQSASQGGDVGWFGYRGRLPAAVSRAAYLQQVGEVGQPVESPLGIHLIEVTDIRPG 320

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
              I        +      +    E V K R +A I 
Sbjct: 321 ELGI---EDARKEIFDELSQSRWNEIVTKSRESARIE 354


>gi|257066459|ref|YP_003152715.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaerococcus
           prevotii DSM 20548]
 gi|256798339|gb|ACV28994.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaerococcus
           prevotii DSM 20548]
          Length = 359

 Score = 95.9 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 94/278 (33%), Gaps = 23/278 (8%)

Query: 40  SRIRTTINGEVITDGDISKRIALLK-LQKINGELEKIAVQELIVETLKKQEIEKSGITFD 98
            +    ++GE I+  D    ++    +     +L+   V  ++ + L   +I+K+ I  D
Sbjct: 49  DKTVAIVDGEKISKDDYKDELSFYASMLASQQQLKNSIVTMMVQDKLIANDIKKNDIKID 108

Query: 99  SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGN 158
              V+   +Q  +N G   +   +  D     D   +       +     +  F      
Sbjct: 109 DKEVDDALMQSVQNFGGQEQFDKTLDDYNMSLDKFKETLKKD--LMYKKHREWFDSNNEV 166

Query: 159 LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
            E EI    +  K+  V+      ++              ++  K+ +E           
Sbjct: 167 TEDEIKKYFEDNKDEFVKVDASHILV------------QDEETAKEVKEKIDNGEDFAKL 214

Query: 219 LEKFASK-IHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR 276
            E++++      + G      +  +  +F++      +   ++P  +Q G   I +    
Sbjct: 215 AEEYSTDTASAKNGGAVGAFSKGQMVKEFEDAAFSMKEGEVSDPVKSQFGYHIIKVNKI- 273

Query: 277 DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                   K  ++ +    K     A+Y+KKL  +A +
Sbjct: 274 -TDSFEDSKEEITKKIKDQK----YADYIKKLHDDANV 306


>gi|257789791|ref|YP_003180397.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Eggerthella lenta
           DSM 2243]
 gi|257473688|gb|ACV54008.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Eggerthella lenta
           DSM 2243]
          Length = 418

 Score = 95.9 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/338 (12%), Positives = 104/338 (30%), Gaps = 41/338 (12%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSR----IRTTINGEVITDGDISKRIALLKL 65
             +I        L   C   +    S   +S     +  T+NG  I +  I+  I  ++ 
Sbjct: 3   KTYIMKTVCAVGLTAACAWGLAGCSSDDNASSGTGGVAGTVNGVEIAEDTITNYIQGVRE 62

Query: 66  Q-----------------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
           Q                      + +          L K+ +E+ GIT +S+ ++    +
Sbjct: 63  QLGADDEDSWGTWLSQNDYTPASVREEVFNSYAQRELLKEGVEEKGITVESSEIDEQIDK 122

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
                  + E + + LD+ G+ ++ ++  +  +     +    F       + ++    Q
Sbjct: 123 VKA-NYDTDEKWQAALDQAGMTEDSYRAEIEQKLKENKL-YASFASDEDPSDADMLQYAQ 180

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-H 227
                         +LF+  D     +          ++         + +++++     
Sbjct: 181 MYATAYDGSKRSSHILFNSDDEATAQEVL--------DKLNSGELDFVDAVKEYSQDPGS 232

Query: 228 DVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA 286
               G   +   S+L  ++++      +   +    TQ G+  I   D      E+    
Sbjct: 233 VERDGDVGWNNPSNLAKEYKDGLEPLEKGQLSGLVTTQFGIHIIKCTDVYKAPEEVTSLD 292

Query: 287 YLSAQ--------NTPTKIEKHEAEYVKKLRSNAIIHY 316
            +  +           TK ++   +++ +    A I  
Sbjct: 293 QIPEEWISVIASSLKSTKQQEAYKKWLDETTEAADIKI 330


>gi|254448730|ref|ZP_05062188.1| foldase protein PrsA, putative [gamma proteobacterium HTCC5015]
 gi|198261738|gb|EDY86025.1| foldase protein PrsA, putative [gamma proteobacterium HTCC5015]
          Length = 306

 Score = 95.9 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/316 (11%), Positives = 78/316 (24%), Gaps = 50/316 (15%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMS-------SRIRTTINGEVITDGDISKRIA 61
           L+   K L    V+    +         A           +  ++NG  IT   I + + 
Sbjct: 3   LNMLKKTLLATAVIGALSLTACKDNGQQAQQPGLFPVKGEVVASVNGVDITQPQIDEYVD 62

Query: 62  LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
                          V+ELI   + +Q   + G                           
Sbjct: 63  YRAGMNQPAA---DPVEELINLEILRQAAVEQGFADKPEVRAA----------------- 102

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
                            A  ++   +V+        + ++    ++Q             
Sbjct: 103 -------------MTRAATNTLANPLVREKISGDVSDEDLRAEYDEQVKMMEEASGGGSE 149

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
                I     +    +        +            E+ +      S G   +     
Sbjct: 150 FNASHILVESEEEAKAL-------IKQLDDGADFATLAEENSVGPSASSGGSLGWATADT 202

Query: 242 LHPQFQNLLKKSQNN--TTNPYVTQKGVE-YIAICDKRDLGGEIALKAYLSAQNTPTKIE 298
               F   L++ ++   T  P  TQ G    +    +     E      + +Q     ++
Sbjct: 203 YVEAFATALEQLEDGSYTAAPVETQFGWHVILRSESRESQAPEAPAFDMVKSQLEKVVMQ 262

Query: 299 KHEAEYVKKLRSNAII 314
           K    Y++ LR+ A +
Sbjct: 263 KRMQSYMENLRNKANV 278


>gi|148548673|ref|YP_001268775.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           F1]
 gi|148512731|gb|ABQ79591.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           F1]
          Length = 623

 Score = 95.9 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 46/402 (11%), Positives = 117/402 (29%), Gaps = 89/402 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++++  +    +    A  S+    +NG+ I+  ++S+  
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAA 60

Query: 61  ALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF- 106
            + + Q +                L + A++ LI   L  Q  E +   F    ++    
Sbjct: 61  DMQRRQLMQQLGKDFDPALLDDKLLREEALKGLISRKLLLQGAEDAKFAFSEAALDQVIL 120

Query: 107 --VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML---------- 154
              +   +   SA+ F   + + G G   F++ L  + +   +                 
Sbjct: 121 QTPEFQVDGKFSADRFDQVIRQMGYGRMQFREMLGEEMLIGQLRTGLAGSSFVTDQQVDA 180

Query: 155 -----------------------KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                                  K  + E++   ++   + ++  + +I  +        
Sbjct: 181 FARLEKQTRDFASLTFKADPAAVKVSDEEVKAHYDQHAKEFMSPDQVVIDYIELKKSAFF 240

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKL-------------------------------- 219
            Q +   ++     E+    L +  +                                  
Sbjct: 241 DQVKVTDEELKAQYEKEIANLAEQRHAAHILIEVNDKVSDAQAKARAEEIEQRLAKGEDF 300

Query: 220 ----EKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAIC 273
               ++F+       S G   +       P F+    +      + P  T+ G   I + 
Sbjct: 301 AALAKEFSQDPGSATSGGDLGFAGPGVYDPAFEEALYQLQNGQVSAPVRTEFGYHLIKLL 360

Query: 274 DKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             +  ++    +LK  L+       +E+   +  K+L+  A 
Sbjct: 361 GVQAPEVPSFASLKDKLTRDLKMPLVEQRYVDASKQLQDAAY 402


>gi|114704310|ref|ZP_01437218.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fulvimarina pelagi
           HTCC2506]
 gi|114539095|gb|EAU42215.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fulvimarina pelagi
           HTCC2506]
          Length = 295

 Score = 95.9 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/287 (11%), Positives = 78/287 (27%), Gaps = 48/287 (16%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLK---LQKINGELEKIAVQELIVETLKKQEIE 91
                S +  T+  E IT+ D++   A +     +    +     +  LI   +  Q  E
Sbjct: 23  QVFAQSPVVATVGEEEITEADLTAAQAEIGGDFERVPEDQRRIAVLAALIDIKVLAQAAE 82

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
           ++ +  D+                                     +L  +++       +
Sbjct: 83  EATLQDDAQIAATI------------------------------DFLRDRTLHNAYFARE 112

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
            +    + E+     ++       +E   R +L              + + +   E    
Sbjct: 113 GVDTVTDEELRARYEQEIAAMEPPQEVRARHIL-----------LETEDQARTVIEELQN 161

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEY 269
                    + ++     + G   +  +  + P F +          T  P  TQ G   
Sbjct: 162 GADFAELATEKSTGPTAQNGGDLGFFADGQMVPPFSEAAFALEPGAITEEPVQTQFGWHV 221

Query: 270 IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           I + +KR           +  Q     +++     V + R    + Y
Sbjct: 222 IKVEEKRQAEP--PAYEQVQEQIRRAVLQEKYVGLVGEAREELGVTY 266


>gi|222053408|ref|YP_002535770.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
           FRC-32]
 gi|221562697|gb|ACM18669.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
           FRC-32]
          Length = 296

 Score = 95.5 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 29/300 (9%), Positives = 76/300 (25%), Gaps = 34/300 (11%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQE 79
           ++  +   + +         + +   +   V+   D+ + IA L  +       +     
Sbjct: 6   YLFALVAGMLLAGTVHAEEVNPVVGKVGDFVLRQADLERVIANLTPEAQQKFQGEQEQAS 65

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           L+ + L  + +                                              Y+ 
Sbjct: 66  LVNQILLTKALAAKARKEGFERKPEV--------------------------KEQLSYII 99

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
            Q +  + ++          + E+    Q+ +   V    ++         K        
Sbjct: 100 DQFLGQEYLRKVVTANVEVPDAELKKYYQEHEKDFVVPERVKVRHIYFAAAKDATAEVKA 159

Query: 200 KRIKDAEESRLRLPKDCNKLE----KFASKIHDVSIGKAQYLLESDLH--PQFQNLLKKS 253
           +    AE+   +L K  +  +             + G   YL     +     +      
Sbjct: 160 QARAKAEKIAEQLKKGGDFAKLAGENSEDTESAANGGDLGYLTPGKTNSEEFEKAAFSLK 219

Query: 254 QNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
               +    T  G   I + ++++         K Y+S+       EK   E++  +   
Sbjct: 220 AGEVSPVVETPFGYHIIKVDERQEKRTATFEETKDYISSTLKAQLEEKKAREFLDAVAKE 279


>gi|163867494|ref|YP_001608693.1| peptidyl-prolyl cis-trans isomerase [Bartonella tribocorum CIP
           105476]
 gi|161017140|emb|CAK00698.1| peptidyl-prolyl cis-trans isomerase [Bartonella tribocorum CIP
           105476]
          Length = 317

 Score = 95.5 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 30/290 (10%), Positives = 69/290 (23%), Gaps = 48/290 (16%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISK---RIALLKLQKINGELEKIAVQELIVETLKKQ 88
           + +     S +   I+G+ IT G +      I     +  + +   + ++  +      +
Sbjct: 41  ASEKAVSPSHVMAVIDGKNITAGQLDDLALEINPNLARFPDEQRRIMVLKAYLDMQALAK 100

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
                 +                                          +    +     
Sbjct: 101 AARSKDLDKTEAYNKR------------------------------MAVMRDNVLQQLYF 130

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
           K   + K  + ++E    ++        E   R +L                      + 
Sbjct: 131 KQAIVDKISDTDLEDLYKQEIAALPKEDEVKARHILVKTRKEAEA-----------IIKH 179

Query: 209 RLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKG 266
             +        +K ++       G   Y     +   F++          T  P  +  G
Sbjct: 180 LNKGENFEEIAKKSSTDGSAAVGGDLGYFSHGQMVKPFEDAAFGLKVGEYTKQPVESPFG 239

Query: 267 VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
              I + D+R           +        I+K   E +  LRS   + Y
Sbjct: 240 WHIIKLEDRRVKQP--PTFDEVKEMLRTQLIKKRYQELIVDLRSKIDVKY 287


>gi|296135612|ref|YP_003642854.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia
           K12]
 gi|295795734|gb|ADG30524.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia
           K12]
          Length = 640

 Score = 95.5 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 49/405 (12%), Positives = 99/405 (24%), Gaps = 103/405 (25%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK-- 58
           M   +    S  ++++    +   F +  I  Y S+  S+     + G+ I+   +    
Sbjct: 1   MLESIR-KHSKLMQIVLFVLIFPSFVLFGIQGYSSFEGSADAAAKVGGQTISMQQLDAAN 59

Query: 59  --RIALLK---------LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
              IA L+          Q    E +   +  +I +TL + E  +  +      V    +
Sbjct: 60  RDEIARLQSMLGSAVDIKQLDTPEQKLRTLDGMIRQTLLQLEARREHLEVTDAQVQQAIL 119

Query: 108 QHAR-------NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK----------- 149
           Q  +       +     + + S +  QG+    F+  +  Q I   V+            
Sbjct: 120 QIPQIAALRKPDGSFDVQAYRSLIAAQGMNTAQFEAQVREQLILQQVLSGLAGSVIDSQA 179

Query: 150 ----------------------NDFMLKYGNLEMEIPANKQKMKNITVREY--------- 178
                                  D+  +      EI    +       +           
Sbjct: 180 LATAAAKAAAQQREVRLALFKPADYTAQVQVTPQEIETFYKNNTARFQKPESADIQYVVL 239

Query: 179 -------------------------------LIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
                                            R     I           ++    AE 
Sbjct: 240 SAAEVAAGIKVTAEQAKAFYDANLSKFSTPAERRASHILIAVPADATAAQQEQAKARAEA 299

Query: 208 SRLRLPKDCNKLEKFASKI-----HDVSIGKAQYLLESDLHPQFQN--LLKKSQNNTTNP 260
              ++  +  +    A K           G   Y     +   F +     +       P
Sbjct: 300 IAKQVKANPAEFAALARKDSQDPGSAEKGGDLGYFTADSMVKPFADAVFGMQKIGEIVGP 359

Query: 261 YVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAE 303
             TQ G   I +   +        A+KA +  Q      +K  + 
Sbjct: 360 IKTQFGYHIIELTGIKPGAQQPFDAVKASIEKQLQQEAAQKQMSA 404


>gi|313499610|gb|ADR60976.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           BIRD-1]
          Length = 623

 Score = 95.5 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 46/402 (11%), Positives = 117/402 (29%), Gaps = 89/402 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++++  +    +    A  S+    +NG+ I+  ++S+  
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAA 60

Query: 61  ALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF- 106
            + + Q +                L + A++ LI   L  Q  E +   F    ++    
Sbjct: 61  DMQRRQLMQQLGKDFDPALLDDKLLREEALKGLISRKLLLQGAEDAKFAFSEAALDQVIL 120

Query: 107 --VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML---------- 154
              +   +   SA+ F   + + G G   F++ L  + +   +                 
Sbjct: 121 QTPEFQVDGKFSADRFDQVIRQMGYGRMQFREMLGEEMLIGQLRTGLAGSSFVTDQQVDA 180

Query: 155 -----------------------KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                                  K  + E++   ++   + ++  + +I  +        
Sbjct: 181 FARLEKQTRDFASLTFKADPAAVKVSDEEIKAHYDQHAKEFMSPDQVVIDYIELKKSAFF 240

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKL-------------------------------- 219
            Q +   ++     E+    L +  +                                  
Sbjct: 241 DQVKVTDEELKAQYEKEIANLAEQRHAAHILIEVNDKVTDAQAKARAEEIEQRLAKGEDF 300

Query: 220 ----EKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAIC 273
               ++F+       S G   +       P F+    +      + P  T+ G   I + 
Sbjct: 301 AALAKEFSQDPGSANSGGDLGFAGPGVYDPAFEEALYQLQNGQVSAPVRTEFGYHLIKLL 360

Query: 274 DKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             +  ++    +LK  L+       +E+   +  K+L+  A 
Sbjct: 361 GVQAPEVPSFASLKDKLTRDLKMPLVEQRYVDASKQLQDAAY 402


>gi|326790698|ref|YP_004308519.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           lentocellum DSM 5427]
 gi|326541462|gb|ADZ83321.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           lentocellum DSM 5427]
          Length = 352

 Score = 95.5 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 30/309 (9%), Positives = 83/309 (26%), Gaps = 25/309 (8%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN------------GELEKIAVQE 79
           +      +  +  T+NG  I  GD+ K    +  +  +             + +   +  
Sbjct: 41  AGTDSEAAKTVLATVNGVEILQGDLDKVYNSMVAEYQSYYGESEEMLTFLKQQKPGLLTG 100

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           LI   L KQ+ ++  IT     V   +       G   E     +   G     +K  + 
Sbjct: 101 LINRELLKQKAKELNITCTDEEVEKIYSDLVSTYG--EEQVQEVIKANGFTTETYKAQIK 158

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL------FSIPDNKLQ 193
                  V +     +    + ++     +  +                   +  D+  +
Sbjct: 159 EDEALSKVQEKMQEGEIKVTDEDVKKYYDENIDSFTTGAGANMEHILVKVADTDTDDYKK 218

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL---ESDLHPQFQNLL 250
                 K I+          +   K        +   +    ++     +          
Sbjct: 219 KCDEAVKTIEKEITDGTTFDELKTKYTADGIDTNMYVVEDLGFVQYEQPNYDTAFLAGAK 278

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
           +  +   +    +  G  +I +     +++     +KA ++      +   +    +++ 
Sbjct: 279 EVKEGEISKAVKSSFGYHFIKVEGIKDKEVKPLEDVKAQITTTLENEQKNAYYNAKLEEW 338

Query: 309 RSNAIIHYY 317
              A I  +
Sbjct: 339 TKAAKIEKF 347


>gi|228472041|ref|ZP_04056809.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228276653|gb|EEK15366.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 451

 Score = 95.5 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/315 (10%), Positives = 91/315 (28%), Gaps = 12/315 (3%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--ING 70
           I +L   F+  +     + +         +   +   +I + DI + +  LK Q      
Sbjct: 4   ISILCQLFLFSLLSTSALWAQSPKNKIDGVAAVVGDYLILETDIDRALVELKSQNVDTKN 63

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
                 + +L+ + L   +  +  I    N +     +          D    +D     
Sbjct: 64  VTRCQLLGKLMEDKLYVSQAIQDSIKISDNDIRDGVNRRIDFLVEQLGDIKKVVDFYHKD 123

Query: 131 DNHFKQYLAIQSIWPDV----VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
           D    +    + +  +     +K   +        E+     K+    +        +  
Sbjct: 124 DEQSLRDELFEILRQNELSSRMKAKIVENIEVTPEEVKQFFNKIPKDELPTIGTELEIAQ 183

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS---IGKAQYLLESDLH 243
           I       Q  + K I+  +E +  + ++       A            +  +  +S   
Sbjct: 184 IVIEPKAPQSEIDKVIEQLKEIKKDVLENGTSFSTKAILYSADRATGGKELTFNRKSSFA 243

Query: 244 PQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEA 302
            +F+++     +   ++P+ T  G   + +   R     +     +      +   +   
Sbjct: 244 KEFKDVAFSLQEGEISDPFKTDFGWHILQVVKIRGKEVSVRHILMVPQIPQNSL--EEAK 301

Query: 303 EYVKKLRSNAIIHYY 317
           + +  +R   I   +
Sbjct: 302 KKINDIRDKIINKEF 316


>gi|167841272|ref|ZP_02467956.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           thailandensis MSMB43]
          Length = 296

 Score = 95.5 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 32/310 (10%), Positives = 83/310 (26%), Gaps = 34/310 (10%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING- 70
            +  +    + +   ++      +      +        +T  D++  +  +  +     
Sbjct: 1   MMTKMKIRAIAVSGLLLGAP--LAAHARDDVIANAAQASVTQADLATLLKTVNPEVRERL 58

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
             +  A+ +++                         +  A++ G   E            
Sbjct: 59  AADPAALDQVVRS----------------ALAQKAVLADAKSKGWDKEAQ---------V 93

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY--LIRTVLFSIP 188
            +  +Q      +   +   +        + EI A   +     +      +  +  ++P
Sbjct: 94  QSAIEQARRDIVVRSYLASMNAPPADYPSDAEIQAAYDRNLPAFMAPRALHVAQIYIAVP 153

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLES-DLHPQF 246
            N         +R      SR R        +  +       + G   ++ E   L    
Sbjct: 154 PNAEAATLDKARRQAADLASRARNGDFAALAKANSQDHASAANGGDLGFVPEPLMLPEVR 213

Query: 247 QNLLKKSQNNTTNPYVTQKGVEYIAICD--KRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
           Q          + P  T  G   + + D           +K  + A     + +++   Y
Sbjct: 214 QAAGALKPGQVSAPIRTPAGFHVVKLIDARAAAPRPLADVKEQVRAMLRAQRTQQNAQAY 273

Query: 305 VKKLRSNAII 314
           + KL +NA I
Sbjct: 274 LAKLTANAPI 283


>gi|167032914|ref|YP_001668145.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           GB-1]
 gi|166859402|gb|ABY97809.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           GB-1]
          Length = 623

 Score = 95.5 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 47/402 (11%), Positives = 118/402 (29%), Gaps = 89/402 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++++  +    +    A  S+    +NG+ I+  ++S+  
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAA 60

Query: 61  ALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF- 106
            + + Q +                L + A++ LI   L  Q  E +   F    ++    
Sbjct: 61  DMQRRQLMQQLGKDFDPALLDDKLLREEALKGLISRKLLLQGAEDAKFAFSEAALDQVIL 120

Query: 107 --VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML---------- 154
              +   +   SA+ F   + + G G   F++ LA + +   +                 
Sbjct: 121 QTPEFQVDGKFSADRFDQVIRQMGYGRMQFREMLAEEMLIGQLRTGLAGSSFVTDQQVDA 180

Query: 155 -----------------------KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                                  K    E++   ++   + ++  + +I  +        
Sbjct: 181 FARLEKQTRDFASLTFKADPAAVKVSEEEVKAHYDQHAKEFMSPDQVVIDYIELKKSVFF 240

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKL-------------------------------- 219
            Q +   ++     E+    L +  +                                  
Sbjct: 241 DQVKVTDEELKAQYEKEIANLAEQRHAAHILIEVNDKVTEAQAKARAEEIEQRLAKGEDF 300

Query: 220 ----EKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAIC 273
               ++F+       + G   +       P F++   K      + P  T+ G   I + 
Sbjct: 301 AALAKEFSQDPGSANNGGDLGFAGPGVYDPAFEDALYKLQDGQVSTPVRTEFGYHLIKLL 360

Query: 274 DKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             +  ++    +LK  L+       +E+   +  K+L+  A 
Sbjct: 361 GVQAPEVPSFASLKDKLTRDLKIPLVEQRYVDASKQLQDAAY 402



 Score = 35.4 bits (79), Expect = 10.0,   Method: Composition-based stats.
 Identities = 25/270 (9%), Positives = 61/270 (22%), Gaps = 15/270 (5%)

Query: 60  IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
           I LL +Q            +L  +       ++            +              
Sbjct: 357 IKLLGVQAPEVPSFASLKDKLTRDLKIPLVEQRYVDASKQLQDAAYEASDLAQPAQDLNL 416

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
                   G              +       + + +  N        +  +         
Sbjct: 417 KVHTSAAFGREGGEGITANRS--VVQAAFSEEVLDEGANSTAIELDPETTVVLRVKEHRK 474

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI-------- 231
              +        +      +K   + +    +L          A  +H+           
Sbjct: 475 PEQLPLEAVAKNISEHLAKEKATAELKAKADKLIAGLRDGSIAAGSVHEGQGWKAYEAVT 534

Query: 232 -GKAQYLLESDLHPQFQ-NLLKKSQNNTTNPYVTQKG-VEYIAICDKRD-LGGEIALKAY 287
            G+   +  ++L   F+    +          V + G +  + +    +        K  
Sbjct: 535 RGEDG-IDPAELQALFRLGKPQAKDKPVYGSVVLRDGSLVVLQLKGVNEGATATDEEKQQ 593

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           +         ++  A Y K+L +NA I  Y
Sbjct: 594 IRRYLASRAGQQDFAAYRKQLEANADITRY 623


>gi|54309794|ref|YP_130814.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium
           profundum SS9]
 gi|46914232|emb|CAG21012.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium
           profundum SS9]
          Length = 623

 Score = 95.5 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/406 (9%), Positives = 95/406 (23%), Gaps = 94/406 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    ++  F    + SY +   S      ING  I+  D  +  
Sbjct: 1   MMERLREGVNSIWVKVILGLIIFSFVFAGVGSYLAGG-SQPAAAKINGTEISQNDFEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELI-----------------VETLKK 87
              + +  +                 +  +  +  +I                  E ++K
Sbjct: 60  QNERNRMQSQLGDYFSTLLGDPEYVKQFRQSVLDRMINDVLIEQRATELGLRISDEHIRK 119

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS----- 142
                     D    N  +    R +G + + F+ ++    +                  
Sbjct: 120 TITSMPEFQRDGQFDNDSYTMLLRRSGFTPDQFAEYMRTDMLRTQFLTAIQGSDFTLDSE 179

Query: 143 --------IWPDVVK------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS-- 186
                       VV+       DF       + E  A  ++   +  R   ++       
Sbjct: 180 LTALRKLEAQQRVVRSLTLDLADFTKNATVTDEEAKAFYEQNPQMFTRPDQVKVAYIELS 239

Query: 187 -----------------IPDNKLQNQGFVQKRIKDAEESRLR-----------------L 212
                              +        +++R       +                    
Sbjct: 240 GEGLKDTLDVSDEDVKAYYEEHKDKYSSIEQRQVSHILVQGDNADAKAKAEALKAELDAG 299

Query: 213 PKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEY 269
                     +         GK  +     + P F++      +  + +    +  G   
Sbjct: 300 ADFAELALSSSDDTYSGKDGGKLDWFERGVMDPAFEDAAFGLANNGDISGVVKSSFGYHI 359

Query: 270 IAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           I +   +   +     + A +  +    +  +H  +   KL   A 
Sbjct: 360 IKLDAVKASQVKPFADVSAEIIVELREQQAAEHFYDMQTKLAETAF 405


>gi|308445916|ref|XP_003087049.1| hypothetical protein CRE_13891 [Caenorhabditis remanei]
 gi|308264485|gb|EFP08438.1| hypothetical protein CRE_13891 [Caenorhabditis remanei]
          Length = 438

 Score = 95.5 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 29/313 (9%), Positives = 95/313 (30%), Gaps = 17/313 (5%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK-------RIALLKLQ 66
           K    +    +  ++        A   +I   +    I   D+ +       R+   K +
Sbjct: 5   KFKKLFKASTLALLISTSVSVYAAPQDQIIAIVGSTAILKSDLDQGVAEATHRLQAQKKE 64

Query: 67  KINGE-LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS--AEDFSSF 123
                 L++  + +LI    + ++++K G+  D  ++N   ++ A+ +G +         
Sbjct: 65  IPPQNILQQQVLSQLITHDAQLEQVKKYGLKADEKSLNEAVLKVAQQSGENSLEAFQKKL 124

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                      +  +A   +   + +   M +    ++++                 +  
Sbjct: 125 DAVAPGTYELLRNRVAEDLLIQRLSQQQVMSRIKITDLDVENFL--KSPEGQAAVGSQVH 182

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
           +  +  +       ++   K             +  +KF++    V      +   SD+ 
Sbjct: 183 VLHMRISGEAPASELESIAKAVRTDLKDSNDVKSIEKKFSTAQVKVDGADMGFRPLSDIP 242

Query: 244 PQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIE 298
                 +       TT+    + GV  + + +K+              ++  + +     
Sbjct: 243 TDLAARVTTLEPGQTTDLIPAKDGVHVLKLLEKKSNEQKALVPQFNTRHILIKTSEVVSP 302

Query: 299 KHEAEYVKKLRSN 311
           ++  + +  + + 
Sbjct: 303 ENAKQTIDSIYNR 315



 Score = 88.2 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 45/142 (31%), Gaps = 3/142 (2%)

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQY 236
               T    I  +++ +    ++ I                   +++        G   +
Sbjct: 285 PQFNTRHILIKTSEVVSPENAKQTIDSIYNRLKAGDDFATLASTYSNDPGSARDGGSLGW 344

Query: 237 LLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIA-LKAYLSAQNTP 294
           +    + P+F  L++ S  N  + P+ TQ G   + +   R         K         
Sbjct: 345 VSPGMMVPEFDKLMQSSPVNEISKPFQTQFGWHILQVTGTRQQDMTSEYQKRMARQILGE 404

Query: 295 TKIEKHEAEYVKKLRSNAIIHY 316
            + E     ++++LR+N  I  
Sbjct: 405 RQFESEYDGWLRELRANTYIEI 426


>gi|90579274|ref|ZP_01235084.1| putative peptidyl-prolyl cis-trans isomerase D [Vibrio angustum
           S14]
 gi|90440107|gb|EAS65288.1| putative peptidyl-prolyl cis-trans isomerase D [Vibrio angustum
           S14]
          Length = 630

 Score = 95.5 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 38/406 (9%), Positives = 97/406 (23%), Gaps = 94/406 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++    +     +    ++  F    + SY +      +   +N + I+     +  
Sbjct: 1   MMERLREGANSIWVKIILSLIIFSFVFAGVGSYLAGGNEQ-VAAKVNDKEISQRAFEQAY 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + Q                    +     ++ ++ + L +Q   + G+      V  
Sbjct: 60  QNQRNQMQQRLGDYFSTLMGDPAYVQQFRNSVLERMVNDELIEQRATELGLGVSDAQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
             V           + E ++  L + GI    F + +    +    +             
Sbjct: 120 AIVAMPAFQVDGVFNNEQYNLTLRRAGISPEQFAESIRKDMLRQQFLSALEGSDFALNNE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNIT-------------- 174
                                 DF  K    + E  A  +K K                 
Sbjct: 180 LNELRKLESQERVVRTLKLNLADFTDKVTVTDEEAKAYYEKNKTQFTRPAQVKVSYIELS 239

Query: 175 ----------------------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
                                   +Y     +         +    + + +         
Sbjct: 240 DKNLVNNIKITDKEAEAYYNEHKSKYSTAEKIQVSHILVKGDSDASKAKAEALLAELKAG 299

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK--SQNNTTNPYVTQKGVEY 269
               +  +K +         GK  +  +  + P F+          + +    +  G   
Sbjct: 300 ANFADVAKKSSDDTFSAKDGGKLDWFGKGVMDPAFEKAAFSLAKPGDMSGLVKSSFGYHI 359

Query: 270 IAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           I +    +  +     +KA + A+    ++ +   +   KL   A 
Sbjct: 360 ILLDGIEEPKVKPFADVKASIVAELQEQQVAEQFYKLQSKLAETAF 405


>gi|300023220|ref|YP_003755831.1| SurA domain protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525041|gb|ADJ23510.1| SurA domain protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 442

 Score = 95.5 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 92/262 (35%), Gaps = 5/262 (1%)

Query: 56  ISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
           + +       +     ++K A++ELI E LK QE +K  +T + + V+      A    +
Sbjct: 184 LQREAFESARKASLPAVKKQAIEELIDERLKLQEAKKQSVTIEDSEVDRVITGIAERNKM 243

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
           + +    F  + G   +  K  +     W +VV+  F         ++            
Sbjct: 244 TLDQ---FTKQVGGSIDPMKSRIRAALSWNEVVRRRFGPLINVNTKDVDKMVATAAGSAQ 300

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
            +  ++     I   K   +  + +RI++AE+ R R     +     A+ I         
Sbjct: 301 EDVELQIQRVQIMLPKKMEEHGIAQRIEEAEKVRSRFTDCKSTAAA-ATGIPGAKFENIG 359

Query: 236 YLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP 294
               S L    + LL   S      P V    VE   +C +  +  +   +     +   
Sbjct: 360 KRKSSTLPEPTRTLLLNASDGEMLPPSVGDGAVELYVVCGRDSVKSDADKRTQAEGELKQ 419

Query: 295 TKIEKHEAEYVKKLRSNAIIHY 316
            + E     Y+K LR +A I Y
Sbjct: 420 KEFEVMARRYLKDLREDAHIEY 441


>gi|26989028|ref|NP_744453.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           KT2440]
 gi|24983852|gb|AAN67917.1|AE016424_3 peptidyl-prolyl cis-trans isomerase D, putative [Pseudomonas putida
           KT2440]
          Length = 623

 Score = 95.5 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/402 (11%), Positives = 117/402 (29%), Gaps = 89/402 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++++  +    +    A  S+    +NG+ I+  ++S+  
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAA 60

Query: 61  ALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF- 106
            + + Q +                L + A++ LI   L  Q  E +   F    ++    
Sbjct: 61  DMQRRQLMQQLGKDFDPALLDDKLLREEALKGLISRKLLLQGAEDAKFAFSEAALDQVIL 120

Query: 107 --VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML---------- 154
              +   +   SAE F   + + G G   F++ L  + +   +                 
Sbjct: 121 QTPEFQVDGKFSAERFDQVIRQMGYGRMQFREMLGEEMLIGQLRTGLAGSSFVTDQQVDA 180

Query: 155 -----------------------KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                                  K  + E++   ++   + ++  + +I  +        
Sbjct: 181 FARLEKQTRDFASLTFKADPAAVKVSDEEVKAHYDQHAKEFMSPDQVVIDYIELKKSAFF 240

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKL-------------------------------- 219
            Q +   ++     E+    L +  +                                  
Sbjct: 241 DQVKVTDEELKAQYEKEIANLAEQRHAAHILIEVNDKVTDAQAKARAEEIEQRLAKGEDF 300

Query: 220 ----EKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAIC 273
               ++F+       + G   +       P F+    K      + P  T+ G   I + 
Sbjct: 301 AALAKEFSQDPGSANTGGDLGFAGPGVYDPAFEEALYKLQDGQVSAPVRTEFGYHLIKLL 360

Query: 274 DKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             +  ++    +LK  L+       +E+   +  K+L+  A 
Sbjct: 361 GVQAPEVPSFASLKDKLTRDLKMPLVEQRYVDASKQLQDAAY 402


>gi|254438097|ref|ZP_05051591.1| SurA N-terminal domain family [Octadecabacter antarcticus 307]
 gi|198253543|gb|EDY77857.1| SurA N-terminal domain family [Octadecabacter antarcticus 307]
          Length = 383

 Score = 95.5 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 87/248 (35%), Gaps = 5/248 (2%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              +N  V+++ +I +R+ALL   +  G LE  A ++LI E LK + ++ + +      +
Sbjct: 9   AIIVNDSVVSEFEIDQRVALLLAFRTPGNLEDTAHEQLIQERLKLEALDSARLRITDEGL 68

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                + A    L  + F + L + G+ +  F+ ++ +   W D ++  F       E +
Sbjct: 69  VLAMTEFATRANLELDQFITMLGQSGVAEETFRDFVRVNVSWRDFIRTRFNDSAQVSEAD 128

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           I     +    +  E L+  ++                   +             +    
Sbjct: 129 IDLALGQSGASSSIEVLLNEII----IPAPAESAQQAMATAERIAQLTTTSAFEAEARSV 184

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           ++       G+  +L  S+     +  LL  +    T P     GV    +   R++   
Sbjct: 185 SALPSRTRGGRLDWLPISNYPAGLRGLLLNLAPGEVTAPIPITDGVALFQMRGLREVPRA 244

Query: 282 IALKAYLS 289
               A + 
Sbjct: 245 APEPAAIE 252


>gi|110589212|gb|ABG77115.1| peptidyl-prolyl cis-trans isomerase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 241

 Score = 95.5 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 75/219 (34%), Gaps = 4/219 (1%)

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           LI   L+ Q   + GIT D  T++      ARN  +S       L+  GI   HF++ L 
Sbjct: 1   LITNQLQLQTATRLGITVDDATLSRTIASIARNNNISLNRLRETLESDGINFTHFREKLR 60

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
            + I   + + + + +    E ++ ++  +    + +          I   +      VQ
Sbjct: 61  REIIINRLRQKEVVNRIVITEQDVRSHMAREAGSSRQRAAFHIQHILIATPEGAAPEDVQ 120

Query: 200 KRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQN 255
                AE+            +   + +     +  G   ++  + +   F +L+ +    
Sbjct: 121 AARGKAEQLVLELREGADFSSTAIRESDGRQALEGGDLGWIEAARVPSIFTHLMDQLEPG 180

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP 294
           + ++P     G   I + + R     +  + +       
Sbjct: 181 DISDPVRNASGFHIIKLVEVRGAKRHLVSQTHARHILIN 219


>gi|56461330|ref|YP_156611.1| parvulin-like peptidyl-prolyl isomerase [Idiomarina loihiensis
           L2TR]
 gi|81678272|sp|Q5QVN9|SURA_IDILO RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|56180340|gb|AAV83062.1| Periplasmic parvulin-like peptidyl-prolyl isomerase (two homologous
           domains) [Idiomarina loihiensis L2TR]
          Length = 432

 Score = 95.5 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/317 (12%), Positives = 110/317 (34%), Gaps = 18/317 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIV---SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI- 68
           +K + ++    +      +   + ++  +  R+   ++  V+    I + I  +K  +  
Sbjct: 1   MKKIASFCSAAVLIASSFLLNNTVQAQQILDRVVVVVDDGVVLQSQIDQLIQQVKNGQNF 60

Query: 69  -------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
                  +  LE  A++ LI++ ++ Q   + GI  D N +     + A N  L+  +  
Sbjct: 61  NSSNAPSDEVLETQAIERLILQEIQLQMANRMGIEIDDNQLEQAINEIANNQDLTTAELR 120

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
             +   G+    +++ +  + +   V +     +      EI    + +++    +   R
Sbjct: 121 ENMVSSGMSWAAYRENIRNELVIQQVQRAAVQQRVSITPQEINNLVKLIESNQEVQTEYR 180

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAE---ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
                I  +   +Q  ++K  + A        +     +   + +S    +  G   ++ 
Sbjct: 181 LAQILISADSNSSQAELEKAKERANTVLNLLDKGSDFADLAVRSSSGSAALDGGDLGWMT 240

Query: 239 ESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTP 294
            + +   F   +      +   P  +  G   + + DKR    +  +     ++  + + 
Sbjct: 241 VNGMPTLFAEAVDGKSVGDVVGPIRSGIGFHILKVQDKRGEQTVEVQEVKARHILIKPSV 300

Query: 295 TKIEKHEAEYVKKLRSN 311
              +    E + K R  
Sbjct: 301 ILSDNKAKEMLNKYREQ 317



 Score = 77.0 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/272 (13%), Positives = 79/272 (29%), Gaps = 9/272 (3%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           IT  +I+  + L++  +      ++A Q LI       + E       +NTV     + +
Sbjct: 157 ITPQEINNLVKLIESNQEVQTEYRLA-QILISADSNSSQAELEKAKERANTVLNLLDKGS 215

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
               L+    S      G                  V         G +   I  +  K+
Sbjct: 216 DFADLAVRSSSGSAALDGGDLGWMTVNGMPTLFAEAVDGKSVGDVVGPIRSGIGFHILKV 275

Query: 171 KNITVREYLIRTVLFSIPDNKLQ-----NQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
           ++    + +    + +            +    +   K  E+             + ++ 
Sbjct: 276 QDKRGEQTVEVQEVKARHILIKPSVILSDNKAKEMLNKYREQIASGEKTFAELAREHSAD 335

Query: 226 I-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIA 283
                  G   +   +   P+F+       Q+  + P+ TQ G   + +  +R L     
Sbjct: 336 PGSASRGGDLGWARPNKYAPEFKQKVESIEQDTISEPFSTQFGWHIVEVTGRRTLDATEE 395

Query: 284 LKAY-LSAQNTPTKIEKHEAEYVKKLRSNAII 314
            K           K  +    + +++R  A I
Sbjct: 396 NKQERAYQMLFSRKFREELDNWQQEIRDQAFI 427


>gi|317489254|ref|ZP_07947771.1| ppic-type ppiase domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325832301|ref|ZP_08165300.1| PPIC-type PPIASE domain protein [Eggerthella sp. HGA1]
 gi|316911655|gb|EFV33247.1| ppic-type ppiase domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325486137|gb|EGC88591.1| PPIC-type PPIASE domain protein [Eggerthella sp. HGA1]
          Length = 418

 Score = 95.5 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/338 (12%), Positives = 104/338 (30%), Gaps = 41/338 (12%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSR----IRTTINGEVITDGDISKRIALLKL 65
             +I        L   C   +    S   +S     +  T+NG  I +  I+  I  ++ 
Sbjct: 3   KTYIMKTVCAVGLTAACAWGLAGCSSDDNASSGTGGVAGTVNGVEIAEDTITNYIQGVRE 62

Query: 66  Q-----------------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
           Q                      + +          L K+ +E+ GIT +S+ ++    +
Sbjct: 63  QLGADDEDSWGTWLSQNDYTPASVREEVFNSYAQRELLKEGVEEKGITVESSEIDEQIDK 122

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
                  + E + + LD+ G+ ++ ++  +  +     +    F       + ++    Q
Sbjct: 123 VKA-NYDTDEKWQAALDQAGMTEDSYRAEIEQKLKENKL-YASFASDEDPSDADMLQYAQ 180

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-H 227
                         +LF+  D     +          ++         + +++++     
Sbjct: 181 MYATAYDGSKRSSHILFNSDDEATAQEVL--------DKLNSGELDFVDAVKEYSQDPGS 232

Query: 228 DVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA 286
               G   +   S+L  ++++      +   +    TQ G+  I   D      E+    
Sbjct: 233 VERDGDVGWNNPSNLAKEYKDGLEPLEKGQLSGLVTTQFGIHIIKCTDVYKAPEEVTSLD 292

Query: 287 YLSAQ--------NTPTKIEKHEAEYVKKLRSNAIIHY 316
            +  +           TK ++   +++ +    A I  
Sbjct: 293 QIPEEWISVIASSLKSTKQQEAYKKWLDETTEAADIKI 330


>gi|206900652|ref|YP_002251221.1| foldase protein PrsA [Dictyoglomus thermophilum H-6-12]
 gi|206739755|gb|ACI18813.1| foldase protein PrsA [Dictyoglomus thermophilum H-6-12]
          Length = 355

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/322 (12%), Positives = 89/322 (27%), Gaps = 25/322 (7%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ---- 66
              K+L   FV I       V+     M +     ING  ++  +   R+  +K Q    
Sbjct: 5   SIFKILFIVFVAIFILGGAFVALVYHQMKNYPVLKINGMPVSRQEYKDRLNFIKTQYSIM 64

Query: 67  -------KINGELEKIAVQELIVE--TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
                      ++     +E I +    K  + E        +                +
Sbjct: 65  FGVDFTTTQGQKMLSQVKEETIKDIARWKIVQAETKKRGISVSEKEVETRLKEIEKEFPS 124

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
                    Q   D +  +    +++    + ++        E EI     +   +    
Sbjct: 125 VLQFEITLSQYGYDRNTFKEELRKNLLMRKLMDEIGKDEKVTEDEIKKYYNENIKLF--- 181

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQY 236
                                +K  +   E         +  +K++       S G   +
Sbjct: 182 -----EHPKEYKVYSIFIKDEKKAKEVYNELLSNKITFTDAAKKYSEDTTTKDSGGDLGF 236

Query: 237 LLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNT 293
           + +  L  + + +      N  + P  T +G     + + ++         KA +  +  
Sbjct: 237 ITQGTLPEEVEKVTFTLPLNQISKPIKTDEGYYITKVTEIKEAYTTPYFQAKAEIEDKLL 296

Query: 294 PTKIEKHEAEYVKKLRSNAIIH 315
             K  K   +++++  S A I 
Sbjct: 297 YDKRSKVFNKWLEEQVSKAKIE 318


>gi|330817257|ref|YP_004360962.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           gladioli BSR3]
 gi|327369650|gb|AEA61006.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           gladioli BSR3]
          Length = 259

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 88/278 (31%), Gaps = 48/278 (17%)

Query: 43  RTTINGEVITDGDISKRIALL--KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I    +   +A L  + Q+ + +L K+  QEL+   +  QE  K G+   ++
Sbjct: 25  VAVVNGTPIPKSRVDAMVAQLVQQGQQDSEQLRKMVGQELVNREILMQEALKEGLPNRAD 84

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q++    +  DF+ K    +
Sbjct: 85  VKQQV-------------------------------AIAQQTVVLRALIEDFVKKNQPSD 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+ A   ++             +    + + ++     K             K  +  +
Sbjct: 114 AEVKAKYDELAKGATGSEYHLHHILVDNEQQAKDLIAKIKA----------GAKFEDLAK 163

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTT-NPYVTQKGVEYIAICDKRD 277
           +F+       + G   +       P+F N      +   T  P  TQ G   I + D R 
Sbjct: 164 QFSKDPGSAKNGGDLDWADPKSFVPEFANAATHLQKGQMTDEPVKTQFGWHIIRVDDVRP 223

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +         + AQ     +++    + +KLR+ A I 
Sbjct: 224 IAP--PPFEQVKAQLAQQMVQQKLQAFEEKLRAQAKIQ 259


>gi|313681760|ref|YP_004059498.1| ppic-type peptidyl-prolyl cis-trans isomerase [Sulfuricurvum
           kujiense DSM 16994]
 gi|313154620|gb|ADR33298.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfuricurvum
           kujiense DSM 16994]
          Length = 280

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/303 (12%), Positives = 85/303 (28%), Gaps = 44/303 (14%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIAL-------LKLQKINGELEKIAV 77
              + + S  + A    +  T+NG+ IT  +++K +                 EL    +
Sbjct: 9   IMGLLLGSISASAA---VLATVNGDEITSDEVNKVLIEGTQGRLDSLSPDKQNELRHRII 65

Query: 78  QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY 137
           + +IV+ L   + +K+GI                                          
Sbjct: 66  EGMIVQNLIYDDAQKTGILDSKEYKQEL---------------------------ETTID 98

Query: 138 LAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGF 197
                +   V + +          E+ A      N  + +     +       + + Q  
Sbjct: 99  RLKVQLAAKVWEQEQFDAIKVDAKEVKAYFDTNPNEFIDKEK---IHARHILVRSKTQAQ 155

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNN 256
                           +   + + F+        G   Y     +   F +         
Sbjct: 156 SIIASMKTLSGDRLKKEFMAQAKLFSIGPSAARGGDLGYFPRGQMVASFNDAAFALKTGT 215

Query: 257 TTN-PYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            ++ P  +Q G   I + D++     G  A+K+++  +    K ++   + +  L   A 
Sbjct: 216 VSSIPVQSQFGYHVIYVEDRKPAKKMGFDAVKSFIEQRLKMDKFKETMEKKMAALHEKAK 275

Query: 314 IHY 316
           I Y
Sbjct: 276 ITY 278


>gi|89070359|ref|ZP_01157666.1| PPIC-type PPIASE domain protein [Oceanicola granulosus HTCC2516]
 gi|89044006|gb|EAR50181.1| PPIC-type PPIASE domain protein [Oceanicola granulosus HTCC2516]
          Length = 405

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 90/242 (37%), Gaps = 4/242 (1%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             T+N   I+  +I +R  LL++    G+LE +A ++L+ + LK  E++++G+     ++
Sbjct: 31  AITVNDSAISFYEIDQRAKLLRVFNTPGDLEALAREQLVEDRLKLAELDRAGLQLSEESL 90

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                  A    L  E F   L + G+ +   + ++ +   W D ++  +  +    E +
Sbjct: 91  AAEMEAFAGRADLPYEQFIGVLAEAGVAEETLRDFVRVGVSWRDYIRTRYRGRAEVNEAD 150

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +        N   +      +L  I       +    + I +                ++
Sbjct: 151 VDQTLAAPPNGGTQIE---VLLNEIIIPAPPPRAAEAQAIAERISQTTSTAAFEAAAREY 207

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           ++       G+  +L  ++  P  Q  +L  +    T P     G+    +   R++ G 
Sbjct: 208 SALPSRERGGRLDWLPIANYPPPIQALVLGLAPGEVTAPLPIPNGIALFQLRAVREVAGS 267

Query: 282 IA 283
             
Sbjct: 268 RP 269



 Score = 39.7 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 237 LLESDLHPQFQNLLKKSQNNTTNPYVTQKG---VEYIAICDKRDLGGEIALKAYLSAQNT 293
           L    +       L +  +  T+  +T  G   +  + +C++R    E   +  +++   
Sbjct: 323 LPVGQVPTDIALELARLDDGETSTALTANGGQSLVLLMLCERR-YSEEPVDREAVASNLR 381

Query: 294 PTKIEKHEAEYVKKLRSNAII 314
             ++     + + +LR+ A+I
Sbjct: 382 SQRLSGFADQLLAELRAAAVI 402


>gi|258543673|ref|YP_003189106.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256634751|dbj|BAI00727.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256637807|dbj|BAI03776.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256640861|dbj|BAI06823.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256643916|dbj|BAI09871.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256646971|dbj|BAI12919.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256650024|dbj|BAI15965.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256653014|dbj|BAI18948.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256656068|dbj|BAI21995.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 352

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 74/283 (26%), Gaps = 50/283 (17%)

Query: 42  IRTTINGEVITDGDISKRIALLKLQK---INGELEKIAVQELIVETLKKQEIEKSGITFD 98
           +  T+NGE IT  D+   +  L  Q        +  + V +L  +       +K G+   
Sbjct: 93  VVATVNGEKITLSDVQTAMISLPPQMRQLPPNLIFPMLVNQLADQKAILITAQKEGLDKK 152

Query: 99  SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGN 158
             T                                        ++    +    M    +
Sbjct: 153 PETQQMMVNAS------------------------------NTALQNAWLSEQVMPHLTD 182

Query: 159 LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
             ++   ++        +E   R +L              +    D  +           
Sbjct: 183 DAIKQYYDQNYAGKPAEKEVHARHIL-----------VKTEAEANDVIKKLKAGADFGKL 231

Query: 219 LEKFA--SKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNT-TNPYVTQKGVEYIAICD 274
               +        + G   +  ++D+ P F +      +    + P  +Q G   I + D
Sbjct: 232 AAHVSTDKGSAQQNGGDLGWFKKTDMIPAFSDAAFAMKKGEISSTPVKSQYGYHVIQVLD 291

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            R           +  +     I+K+  E V K  +   I  +
Sbjct: 292 TRTDPV--PTLDAVRDKIRQALIQKYVREAVDKATNQVKIVRF 332


>gi|85058653|ref|YP_454355.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Sodalis
           glossinidius str. 'morsitans']
 gi|84779173|dbj|BAE73950.1| peptidyl-prolyl cis-trans isomerase D [Sodalis glossinidius str.
           'morsitans']
          Length = 617

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/395 (8%), Positives = 105/395 (26%), Gaps = 84/395 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + +  +  +    +   F +  + +Y            +NG+ I+   + + +
Sbjct: 1   MMDNLRAAANHVVLKIILGLIAFSFVLTGVGNYLIGGDGDY-AAKVNGQQISRSQLEQAV 59

Query: 61  ALLKLQKINGE-------------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
              + ++                 + +  + +LI ETL  Q  +K G+    + +     
Sbjct: 60  QNERNRQQEAMGEQFSQLAANEGYMRQQVLSQLIDETLLDQYADKLGLAISDDQIKQAIF 119

Query: 108 QHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN-------------- 150
                          F S +   G+  + +   +  Q +   +++               
Sbjct: 120 AILAFRTEDKFDNAKFRSLIGNMGLSPDQYATLMRKQLLTQQLIQGIGGTGFLLPAETDR 179

Query: 151 ---------------------DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                                       + E++   N  K + ++   + +  +      
Sbjct: 180 LLEVAVQTREARLAMFAIAALAAKQTASDDEIQASYNAYKNQYLSPEAFKVSYIPMDAET 239

Query: 190 NKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKLE 220
            + +     Q+     ++                                +     +  +
Sbjct: 240 MQTKTTVDEQEIQAWYDQHHDQFTVPGRKRYSIIQSKSENDANDWLKQLQQGADFASLAK 299

Query: 221 KFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
             ++  +   + G   ++ +SD   + +      +   +    +  G   I + D +   
Sbjct: 300 AHSTDVVSAKNGGDIGWMSDSDTLDELKQANLSQKGQLSGVIKSSVGFLIIRLDDMQPAQ 359

Query: 280 GE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
                A+   ++A+    K         +K+   A
Sbjct: 360 VSPLSAVHDEVAAKVKQEKAIDAYYALQQKVSDAA 394


>gi|254472475|ref|ZP_05085875.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Pseudovibrio sp. JE062]
 gi|211958758|gb|EEA93958.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Pseudovibrio sp. JE062]
          Length = 289

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/317 (10%), Positives = 80/317 (25%), Gaps = 52/317 (16%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMS----SRIRTTINGEVITDGDISKRIALLK 64
           L  F  +L +   +    I   V+    A +     +    +   VIT+ D++       
Sbjct: 2   LRKFTGILGSSVAVAALAISLNVAQAQDAETAPDLDKPVAKVGNSVITEADLAYAAQDYA 61

Query: 65  LQKI---NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
            Q       E  K+    L+   L  +  E+  +    +                     
Sbjct: 62  QQLQRVPPTEWRKVLTDVLVEMKLLAEAGEEEKLAETDDFKR------------------ 103

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
                          +   +++     +          E++   + +        E    
Sbjct: 104 ------------LMAFERTRALRNAYFQKYIQSAVTEDEVKAAYDAEYANYQGAPEINAA 151

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
            +L              +   KD  +            ++ ++     + G   +  +  
Sbjct: 152 HIL-----------VEKEDEAKDIIKQLEGGADFAELAKEKSTGPSGPNGGDLGFFGKGQ 200

Query: 242 LHPQFQNLLKK-SQNNTT-NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
           + P+F+           T  P  TQ G   I   + R              Q     +  
Sbjct: 201 MVPEFETAAFALKPGEFTKEPVQTQFGYHVILNKEARTQPA--PTLEAAEGQIRQELVLA 258

Query: 300 HEAEYVKKLRSNAIIHY 316
              E +++L++   +  
Sbjct: 259 KFREVLEELKAKNTVEI 275


>gi|15613740|ref|NP_242043.1| protein secretion (post-translocation chaperonin) [Bacillus
           halodurans C-125]
 gi|46397037|sp|Q9KDN4|PRSA_BACHD RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|10173793|dbj|BAB04896.1| protein secretion (post-translocation chaperonin) [Bacillus
           halodurans C-125]
          Length = 333

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/303 (12%), Positives = 99/303 (32%), Gaps = 25/303 (8%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K       L    I+   +      S +    ++G  I+D +    + +LK +     L+
Sbjct: 3   KRHLLIAGLACMTILGACNNDDAGSSGQAVVEVDGHEISDAEF---VDMLKERYGEAILQ 59

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           ++  + LI +     EI +  I  +  T                E   +  ++ GI   +
Sbjct: 60  ELVQRHLISQAADSVEIPQEEIDEELETFKSQIGVE-----TDDEMLDALSNQFGITVEN 114

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
            ++++    + P V++   +      + E  A   + ++  +       ++         
Sbjct: 115 KEEFVNEYILPPLVLEKLAVEGVEITDEEKQAYFDENRDSLIEVEASHILV--------- 165

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV-SIGKAQYLLESDLHPQFQNL-LK 251
                ++  ++  +             +++       + G   +  + D+ P+F+     
Sbjct: 166 ---EDEETAEEVLDRLEAGDDFAELASEYSVDPSAEANNGDLGFFGKGDMVPEFEEAAFN 222

Query: 252 KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
              +  + P  +  G   I + D++D      L+  +       +      E ++ L + 
Sbjct: 223 MEIDEVSEPVESTYGYHIILVTDRKD--SYEELEEKIHDTLMRERSRTQ-EEVLRDLLAQ 279

Query: 312 AII 314
           A I
Sbjct: 280 ADI 282


>gi|268679964|ref|YP_003304395.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617995|gb|ACZ12360.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 270

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/306 (12%), Positives = 89/306 (29%), Gaps = 46/306 (15%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDIS---KRIALLKLQKINGEL 72
           +    +  I C V  +S  +      +  T+NGE +TD DI+   + +   K + +  + 
Sbjct: 1   MKKVILSGIACAVLGMSLNAA-----VYATVNGEDVTDQDIAVLMRAMQGAKFESLPADA 55

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           ++  V++ +   L  +E  KSG+  +    +                             
Sbjct: 56  KQKIVEQAVERKLLTKEAVKSGVEKEKEYTDAL--------------------------- 88

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                   + +  ++              E+     K  +  ++   ++     +   + 
Sbjct: 89  ----KRIKEDLSLELWMKKIYNNVKVDAKEVKDYYDKNADKFMQPATVKARHILVKSEEE 144

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
                 +      ++   +           ++       G   +   + +   F +    
Sbjct: 145 AKAAIKELSGLSGQKLNDKF---VELATTKSTGPSGQGGGDLGWFAANQMVKPFADAAFA 201

Query: 253 -SQNNTTN-PYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
             +   T  P  TQ G   I + D +  +      +K  +       K     A   +KL
Sbjct: 202 LKKGEYTKSPVQTQFGFHVILVEDTKAAEKASFEMVKPQIENGLKMEKFRVEVANKAQKL 261

Query: 309 RSNAII 314
           R  A +
Sbjct: 262 RQGAKV 267


>gi|90410786|ref|ZP_01218801.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium
           profundum 3TCK]
 gi|90328417|gb|EAS44715.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium
           profundum 3TCK]
          Length = 623

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/406 (8%), Positives = 96/406 (23%), Gaps = 94/406 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    ++  F    + SY +   S      ING  I+  +  +  
Sbjct: 1   MMERLREGVNSIWVKVILGLIIFSFVFAGVGSYLAGG-SQPAAAKINGTEISQNEFEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELI-----------------VETLKK 87
              + +  +                 +  +  +  +I                  E ++K
Sbjct: 60  QNERNRMQSQLGDYFSTLLGDPEYVKQFRQSVLDRMINDVLIEQRATELGLRISDEHIRK 119

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI---- 143
                     D    N  +    R +G + + F+ ++    +                  
Sbjct: 120 TITSMPEFQRDGKFDNDSYTMLLRRSGFTPDQFAEYMRTDMLRTQFLTAIQGSDFALDSE 179

Query: 144 ---------WPDVVK------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS-- 186
                       VV+       DF       + E     ++   +  R   ++       
Sbjct: 180 LTALRKLEAQQRVVRSLTLDLADFTKNATVTDEEAKVFYEQNPQMFTRPEQVKVAYIELS 239

Query: 187 -----------------IPDNKLQNQGFVQKRIKDAEESRLRLPKDC----------NKL 219
                              +        +++R       +                 +  
Sbjct: 240 GEGLKDTLDVSDEDVKAYYEEHKDKYSSIEQRQVSHILVQGDNADAKAKAEALKAELDAG 299

Query: 220 EKFA--------SKIHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEY 269
             F+                GK  +     + P F++      +  + +    +  G   
Sbjct: 300 ADFSELALSSSDDTYSAKDGGKLDWFERGVMDPAFEDAAFGLANSGDVSGVVKSSFGYHI 359

Query: 270 IAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           I +   +   +     + A +  +    +  +H  +   KL   A 
Sbjct: 360 IKLDAVKASQVKPFADVSAEIIVELREQQAAEHFYDMQTKLAETAF 405


>gi|134293907|ref|YP_001117643.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           vietnamiensis G4]
 gi|134137064|gb|ABO58178.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           vietnamiensis G4]
          Length = 321

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/319 (12%), Positives = 95/319 (29%), Gaps = 41/319 (12%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M +K+ T               ++   + + +  +      +  ++    +T  DI+  +
Sbjct: 26  MMTKMKTR-------------ALVTAGLLLAAPLAAHAQDDVIASVAQASVTQADIAGVL 72

Query: 61  ALLKLQKING-ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
             +  +       +  A+ +++  TL                     +  A++ G   + 
Sbjct: 73  KAVNAEGRERLAADPAALDQVVRATL----------------AQKAVLAEAKSKGWEKDA 116

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
                 +Q   D   + YLA        V         + E++    + +    T R   
Sbjct: 117 QVQAAIEQARRDIVARSYLAS-------VSAPPADYPSDAEIQSAYEQNRAALTTPRALH 169

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLL 238
           +  +  ++P N         ++      +R R           +       + G   ++ 
Sbjct: 170 VAQIYIAVPSNADAATLEAARKRAADLANRARSGDFAALARANSQDAASAANGGDLGFVP 229

Query: 239 ES-DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPT 295
           +S  L    Q          + P  T  G   + + D R         +K  L       
Sbjct: 230 DSLMLPAVRQAADALKPGQVSAPVRTPSGFHVVKLIDVRAAAPRPLADVKEQLRTMLRAQ 289

Query: 296 KIEKHEAEYVKKLRSNAII 314
           +++++   Y+  L +NA I
Sbjct: 290 RMQQNARTYLANLAANAPI 308


>gi|240849866|ref|YP_002971254.1| peptidyl-prolyl cis-trans isomerase [Bartonella grahamii as4aup]
 gi|240266989|gb|ACS50577.1| peptidyl-prolyl cis-trans isomerase [Bartonella grahamii as4aup]
          Length = 317

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/290 (10%), Positives = 70/290 (24%), Gaps = 48/290 (16%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISK---RIALLKLQKINGELEKIAVQELIVETLKKQ 88
           + +     S +   I+G+ IT G +      I     +  + +   + ++  +      +
Sbjct: 41  ASEKAVSPSHVMAVIDGKNITAGQLDDLALEINPNLARFPDEQRRMMVLKAYLDMQALAK 100

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
                G+                                          +    +     
Sbjct: 101 AARSKGLDKTEAYDKR------------------------------MAVMRDNVLQQLYF 130

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
           K   + K  + ++E    ++        E   R +L                      + 
Sbjct: 131 KQAIVDKISDTDLEALYKEEVAALPKEDEVKARHILVKTRKEAEA-----------IIKH 179

Query: 209 RLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKG 266
             +        +K ++       G   Y     +   F++          T  P  +  G
Sbjct: 180 LNKGENFEEIAKKSSTDGSAAVGGDLGYFSHGQMVKPFEDAAFGLKIGEYTKQPVESPFG 239

Query: 267 VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
              I + D+R           +        I+K   E +  LRS   + Y
Sbjct: 240 WHIIKLEDRRLKQP--PAFDDVKEMLRTQLIKKRYQELIVDLRSKMDVKY 287


>gi|293605682|ref|ZP_06688060.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
           43553]
 gi|292815920|gb|EFF75023.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
           43553]
          Length = 684

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/412 (10%), Positives = 103/412 (25%), Gaps = 98/412 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + +    +++L+    ++  F +V I  Y S+        T+ G+ I+  +  +  
Sbjct: 31  MFEFIRSH-RRWMQLILLLLIVPSFFLVGIQGYDSFMRKEPELATVAGQPISRAEFDQAH 89

Query: 61  ALLKLQKINGE-------------LEKIAVQELIVETLKKQEIEKSGITFDSN---TVNY 104
                Q    +             L +  + +LI + L       +              
Sbjct: 90  RNQLEQMRQRQGARFDPAVSDTPALREGLLNQLINQRLLANVAVDNRFNVSDETLRNTIA 149

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK--------------- 149
              +   N   S E +   L  QG+    F+  L        V+                
Sbjct: 150 AIPEVQDNGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVGRVLDPVGQSARAPAEVVAS 209

Query: 150 ------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV-------- 183
                              D+  +      +I A     K        ++          
Sbjct: 210 LESALTQQRTVQLRRFAAEDYRSQVTVSPADIQAWYDANKQQLQIPEQVQVQYLVLDEAA 269

Query: 184 ----LFSIPDNKLQNQGFVQKRIKDAE----------------------------ESRLR 211
               +    ++        + R    E                            +   +
Sbjct: 270 ATQGIQVKDEDLASYYEQNKNRFGQPERRRASHIMIELAPGASEEARKAARAKAEDLAKQ 329

Query: 212 LPKDCNKLEKFA-----SKIHDVSIGKAQYLLESDLH-PQFQNLLKKSQNNTTNPYVTQK 265
              D +K  + A             G   +L    L  P  + +  ++++  +    +  
Sbjct: 330 AAADPSKFAELATKNSQDAGSASKGGDLGWLAPGMLSGPLEKAIFGQAKDQVSGVVESPA 389

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           G+  + + + +    +      +  Q T    ++  A +  ++ S      Y
Sbjct: 390 GLHIVKVTEIQPAAIKPLA--EVKDQITSEVRKQLAAVHFSEMASQLNKQVY 439


>gi|159897379|ref|YP_001543626.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890418|gb|ABX03498.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 315

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/311 (9%), Positives = 80/311 (25%), Gaps = 33/311 (10%)

Query: 19  YFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI-------SKRIALLKLQKINGE 71
             + ++  I+     +     S++   +    IT+ +        S  I           
Sbjct: 8   LLLCLVIAILAGCGSEITTSQSKVLVEVGNSSITEAEFTTFLDLNSNIINQNASGLDANT 67

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
             +  + ++I++ +  +E  K G   DS +     +   +  G     ++ +        
Sbjct: 68  TRQQLLDQMILQKVILEESAKLGAGIDSVSAEQTTMMIDQAVGKEKPTYADYEAFAKENR 127

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
               + +        +    +  K                           +   +  + 
Sbjct: 128 FGTVESMRAYVA-QILTYESYAQKLEVPSA----------------TPQFHLFHILLSSD 170

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL----HPQF 246
             ++    ++                  +++++      + G   +  +           
Sbjct: 171 TVSESVALEQANQVLAQLKTGEDFSILAQQYSADPGSGSNGGDLGWYTQEQYAGFVPEFA 230

Query: 247 QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
             L        + P  TQ G   I I + R+       +          +   +    V+
Sbjct: 231 AALNTLEIGQLSEPVKTQFGYHIIKITESRNAISFGTFQE----LMDSPEGNAYIQSKVE 286

Query: 307 KLRSNAIIHYY 317
           + R N +I  Y
Sbjct: 287 EYRKNDLIKNY 297


>gi|260433485|ref|ZP_05787456.1| ppic-type ppiase domain protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417313|gb|EEX10572.1| ppic-type ppiase domain protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 417

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 94/256 (36%), Gaps = 6/256 (2%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKS 93
            S          +N +++T  ++ +R   L+L  I G  E    + LI E L+KQ + ++
Sbjct: 35  ASAQSPFSPAIRVNQDIVTWYELEQRQRFLELLGIPGSSEAEVRKALIDERLRKQAMREA 94

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
           GI      V     + A    LS E+F + L   G+     + Y+A Q  W D V   F+
Sbjct: 95  GIQSAPEDVQLAIDEFAARGQLSPEEFLAALSDAGVAPETVRDYVASQLAWRDYVSARFI 154

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
            +    + EI     +     ++  L   ++   P    Q +   ++           + 
Sbjct: 155 SQARPTQDEINRALGQAGGGGLQVLLSEIIIPVTPQTLGQAEALAEE-----IAQVKSVD 209

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAI 272
                  ++++     + G+  +L  ++L P  Q ++        T+P      V    +
Sbjct: 210 AFSAAATQYSAAPTRENGGRLDWLNITNLPPVLQPIILGLKTGEVTDPLTLPNAVALFQL 269

Query: 273 CDKRDLGGEIALKAYL 288
              R++       + +
Sbjct: 270 RGLREVATGTPRYSKI 285



 Score = 42.0 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 238 LESDLHPQFQ-NLLKKSQNNTTNPYVTQKG--VEYIAICDKRDLGGEIALKAYLSAQNTP 294
             S++       L K   N  +       G  + ++ +C +    GE   +  ++   T 
Sbjct: 335 SPSEIPRDIALELAKLDPNEVSTTLTRNNGQTLVFLMLCGRTRDLGENTSREDVANALTQ 394

Query: 295 TKIEKHEAEYVKKLRSNAII 314
            +++      +++LR++A I
Sbjct: 395 QRLQAFADSLLEQLRADAAI 414


>gi|110636616|ref|YP_676823.1| peptidyl-prolyl cis-trans isomerase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110279297|gb|ABG57483.1| peptidyl-prolyl cis-trans isomerase (survival protein) [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 452

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/280 (10%), Positives = 91/280 (32%), Gaps = 16/280 (5%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDIS------KRIALLKLQKI 68
           +L  Y  +    +       +  +  +I   ++ +++   ++        R    ++ + 
Sbjct: 5   MLLRYLFVFFVFVTNYHFCAAQQVIDKIVAKVDNQIVLKSEVEISYLQFMRSPEAQMMQT 64

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF----VQHARNTGLSAEDFSSFL 124
             +++   ++ LI+  +         +T +   +N           +  G  A+  S + 
Sbjct: 65  TDDIKCRVLESLIINKMLLARAVMDSVTVEREIINQQIDRRMDYFIQQFGTVAKLESYYN 124

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
                        +  Q +    ++++          ++    + +   ++  +     +
Sbjct: 125 KSIDQLKEELYPQIRDQMVTQK-MQDNITAGVTITPNDVKKFYKALPADSLPYFSSEVEV 183

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKI-HDVSIGKAQYLLES 240
             I      N+    K  +  EE R R       C   ++F+       + G+  +  + 
Sbjct: 184 GQIIRLPEINRQDQLKFKQKLEEIRQRVASGEDFCRLAKQFSQDPVSAKNCGEIGFFKKG 243

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG 279
           +L P+++    K     T+    TQ G   + + ++R   
Sbjct: 244 ELVPEYEAAASKLQPGQTSGVIETQYGYHIVQLIERRGAE 283


>gi|293603952|ref|ZP_06686366.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
           43553]
 gi|292817645|gb|EFF76712.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
           43553]
          Length = 258

 Score = 95.1 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/305 (16%), Positives = 99/305 (32%), Gaps = 52/305 (17%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ--KINGELE 73
           +    +L   C++ + ++           T+NG+ I   ++ + + LL  Q    + +L 
Sbjct: 1   MKRIVMLAAACVIAVPAFAQN------VATVNGKAIPQKNLDQFVKLLVSQGATDSPQLR 54

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           +   QE+I   +  Q  E SGI   ++                                 
Sbjct: 55  EQVKQEMINRQIFVQAAESSGIAKQADVQTEI---------------------------- 86

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
               LA Q I    +  D++ K    + ++ A  +K+K     +   +     + D K  
Sbjct: 87  ---ELARQGILVRALMADYLAKNPVSDAKVTAEYEKIKKEQAGKMEYKVRHILVEDEKTA 143

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK 252
           N    Q +            K  +  +K +         G   +   ++    F   + +
Sbjct: 144 NDLLAQIKSNK--------SKFDDLAKKNSKDPGSAEKGGDLGWAPPTNYVQPFAQAVTQ 195

Query: 253 SQNN--TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
            +       P  TQ G   I + D R +  E      +  Q      ++  A+Y K+LR 
Sbjct: 196 LKKGQLVDKPVQTQFGWHIIMVDDTRPV--EFPPLDQVRPQLEEMLRQQTLADYQKQLRD 253

Query: 311 NAIIH 315
            A I 
Sbjct: 254 KAKIQ 258


>gi|301059212|ref|ZP_07200150.1| PPIC-type PPIASE domain protein [delta proteobacterium NaphS2]
 gi|300446702|gb|EFK10529.1| PPIC-type PPIASE domain protein [delta proteobacterium NaphS2]
          Length = 343

 Score = 94.7 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/320 (10%), Positives = 89/320 (27%), Gaps = 19/320 (5%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +F   S+    L                 +       +   +  + +T   + + + L  
Sbjct: 24  IFKRKSNIFYTLFLLVTAFGGLFFVEGCDRIGKDPGPVVLVVGDQQLTADVLKQNLLLAS 83

Query: 65  LQKI-----NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                       ++   +  +I   L  +  ++ GI           +   +  G S   
Sbjct: 84  EDLPIPAKETENIKTALLDNIIDRYLILEYAKQHGIVVSEKEFQARLIDIKK--GYSESL 141

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
           F   L ++    + + +    Q +   V+    +        E+ A  +   N       
Sbjct: 142 FEEMLLRKWGDPDVWMKRFKEQIVIEKVINAVTVHMEPPDYKEMKARFESNPNHYKAPEE 201

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
           IR                 +K+  +            +   K++     V  G+  ++ +
Sbjct: 202 IRFRQIFCR---------TKKKANELYGKIRSGESLASLARKYSEGPEAVDGGEVGWVAK 252

Query: 240 SDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTK 296
             L     + L + +  + +       G     + D+R  G      +   +      T+
Sbjct: 253 GILDESLDKMLFQMAPGDISPVTKGASGYHIFEVMDRRPGGFRAFSEIIDGIEEDLCQTR 312

Query: 297 IEKHEAEYVKKLRSNAIIHY 316
                 E+++ LRS+  +  
Sbjct: 313 RMSFIKEWLQSLRSDIRVKI 332


>gi|224418500|ref|ZP_03656506.1| cell binding factor 2 precursor major antigen PEB4A [Helicobacter
           canadensis MIT 98-5491]
 gi|253827813|ref|ZP_04870698.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313142030|ref|ZP_07804223.1| cell binding factor [Helicobacter canadensis MIT 98-5491]
 gi|253511219|gb|EES89878.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131061|gb|EFR48678.1| cell binding factor [Helicobacter canadensis MIT 98-5491]
          Length = 271

 Score = 94.7 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 88/301 (29%), Gaps = 42/301 (13%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK---LQKINGELEKIAVQE 79
           I+   V   S       +     +NG+ IT+ DI+  +  +      ++  E +   V +
Sbjct: 4   ILLSSVVAFSLLQGVSFAETFAKVNGDEITEKDIAALMRAMPGVSFAQLPQEAKDQVVNQ 63

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
            +   L   + +K G+                                            
Sbjct: 64  AVERKLLIAQAKKEGVEKSKEFKEAL-------------------------------ESV 92

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
            + +  +V     M K      EI     + K   V+    +     +            
Sbjct: 93  KEDLALEVWMRQEMGKVKVSSSEIEKFYNQNKTKFVQPETAKVKHILVSSEADAKNIIAD 152

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT 258
            +    +  +    K     +  +      + G+  ++ +  + P+F +   K ++   T
Sbjct: 153 LK----KAGKNVASKFEEFAKAKSKDGSAQNGGELGWIAKGQVVPEFADAAFKLNKGQYT 208

Query: 259 N-PYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             P  TQ G   I + DKR         +   +      TK +++  +  + LRS A + 
Sbjct: 209 QTPVKTQFGYHVIYVDDKRPTTTLALKDVSGQIEQNLKLTKFQENVRKEGQDLRSKAKVE 268

Query: 316 Y 316
            
Sbjct: 269 I 269


>gi|320333920|ref|YP_004170631.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
           maricopensis DSM 21211]
 gi|319755209|gb|ADV66966.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
           maricopensis DSM 21211]
          Length = 639

 Score = 94.7 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 93/321 (28%), Gaps = 26/321 (8%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDIS--KRIALLKLQKIN 69
            I L     + ++    P++              +NG VITD D+   +R   +     +
Sbjct: 18  LIVLAVMLVLGMVASFTPLLGNLGGQNKGNPAVKVNGTVITDQDLESVRRGNPVLGLTQD 77

Query: 70  GELEKIAVQELIVETLKKQEIEK--SGITFDSNTVNYFFVQHARNTG-LSAEDFSSFLDK 126
           G L       ++   +++  +++  S        VN    +     G  S +++   L +
Sbjct: 78  GVLGDDFKTAIVESKVQETLLKQGASDQQVSRAEVNDAVSKLREQLGLKSNKEWVDRLQQ 137

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
            G  D  F++    Q  W   +K            E         +    E  I     +
Sbjct: 138 YGFTDASFREAQRTQLAWQKKLKALQDATPKGTPAEAQLYYTLHPDEFKSEARIVGRQIA 197

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD----- 241
           +       Q   Q           +   D  KL    S ++    G    +   +     
Sbjct: 198 VSSEAKAKQLLAQA----------KGGADFAKLASENSTVNKDRGGALGPIENGEPKPVA 247

Query: 242 ---LHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPT 295
              L  +  +     +Q   T+   +      + +            A+++      T  
Sbjct: 248 KITLPAEVGEAAFALTQGGLTDVVKSGDKFYIVKVERFVPASTQPFEAVRSKAIDAVTKQ 307

Query: 296 KIEKHEAEYVKKLRSNAIIHY 316
           K +     +   LR+ A + +
Sbjct: 308 KQDAAVEAWYTDLRNKANVEF 328


>gi|84387739|ref|ZP_00990755.1| peptidyl-prolyl cis-trans isomerse D [Vibrio splendidus 12B01]
 gi|84377422|gb|EAP94289.1| peptidyl-prolyl cis-trans isomerse D [Vibrio splendidus 12B01]
          Length = 621

 Score = 94.7 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/403 (8%), Positives = 94/403 (23%), Gaps = 91/403 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + SY      +     +    I  G+  +  
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYI-TGGGNNAAAKVGNTEIARGEFEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +  +                    K  +  +I + L +Q+ E  G+    + +  
Sbjct: 60  QNERNRMQSQLGDYFAQMLADPAYVESFRKSVLDRMINDVLLEQQAESLGLRISDSQIRT 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK------ 155
             ++  +         E + S L + G     F +Y+    +   +V      +      
Sbjct: 120 MILEMPQFQTAGQFDQEVYQSALRRAGFSAESFAEYMRRDLMRNQLVTALQGSEFVLQGE 179

Query: 156 ---------------------------YGNLEMEIPANKQKMKNITVREYLIRTVL---- 184
                                          + +I     +      R    +       
Sbjct: 180 IDTQSKLIAQTRDIRTVTLSVADLAKGIELTDEQIEQYYSENPQAYTRPEQAKVSYIELS 239

Query: 185 ---------------FSIPDNKLQNQGFVQKRIKDAE--------------ESRLRLPKD 215
                                 L      ++R                   +        
Sbjct: 240 AEALKSQLEVSDEEAQKYYQEHLDKYSTEEQRKVSHILVQGDDEAKAQSILDELNAGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               E+ +         G   ++    + P F++     ++  +TT    +  G   I +
Sbjct: 300 ATLAEEKSDDFGSADVGGDLGWIERDVMDPAFEDAAFALENIGDTTGLVKSDFGYHIIKL 359

Query: 273 CDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            + +         + A +  +           E   +L   A 
Sbjct: 360 DEVKASQAQPYTEVAAEIKQELLDQHAVDQFYEQQTELEKVAF 402


>gi|261253455|ref|ZP_05946028.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio orientalis CIP
           102891]
 gi|260936846|gb|EEX92835.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio orientalis CIP
           102891]
          Length = 619

 Score = 94.7 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/406 (10%), Positives = 102/406 (25%), Gaps = 92/406 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + SY     ++     +    I  G+  +  
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVGGSNNT-AAKVGNVEIGRGEFEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                       K  +  ++ + L +Q  E  G+      V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPSYVESFRKSVLDRMVNDVLLEQHAESLGLRVSDTQVRT 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
             ++  +         E + + L + G     F +YL    +   ++             
Sbjct: 120 LILEMPQFQIDGKFDQEIYQTALRRAGFNAESFAEYLRRDLVRNQLLTAIQGSDFTLPSE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                 DF  K    E EI    ++      R   ++     + 
Sbjct: 180 VEAQSKLLTQTREVKKVTLSLEDFAAKAQLSEDEINDYYKQNPERYTRPEQVKVAYIELS 239

Query: 189 DNKLQNQGFV---------------------------------QKRIKDAEESRLRLPKD 215
             +L++   V                                 Q + +   +        
Sbjct: 240 AQQLKDDIQVSEEQAKQYYQEHLDKYSSEEQRRVSHILVEGDDQAKAQAILDELNAGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               E+ +         G   ++    + P F++         +TT    +  G   I +
Sbjct: 300 ATLAEEKSDDFGSASEGGSLGWIERDVMDPAFEDAAFALTKVGDTTGLVKSDFGYHIIKL 359

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + +D        + A +  +    +      E   +L   A   Y
Sbjct: 360 DELKDSVAKPYAEVAAEIKQELKDQQAVDQYYELQSELEKVAF-EY 404


>gi|294497370|ref|YP_003561070.1| foldase protein PrsA [Bacillus megaterium QM B1551]
 gi|294347307|gb|ADE67636.1| foldase protein PrsA [Bacillus megaterium QM B1551]
          Length = 307

 Score = 94.7 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/309 (11%), Positives = 89/309 (28%), Gaps = 33/309 (10%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN 69
              + L T   ++ +          +   SS++        IT GD+ K++     Q   
Sbjct: 3   KSLVALTTAASLVALSACSGGNDASNANDSSKVIVETKAGNITQGDLYKQMKDTIGQDQF 62

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
             L +   +E ++                   ++          G   +           
Sbjct: 63  NTLVRSVTEEKVLSK---------KYKVTDKELDQQLNILREQYGDQVDSV--------- 104

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                ++ +        + +          + E+     + K    +      ++     
Sbjct: 105 IKQKGEKEVKDMLKVDILREKAATAGIKVSDKELKKAYDEYKAQKPQIRASHILV----- 159

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQN 248
                    +K   + E    +     +  +++++      + G   Y  E  +  +F+ 
Sbjct: 160 -------KDEKTANEVEAKIKKGEDFASLAKEYSTDQQSAANGGDLGYFGEGQMVKEFEE 212

Query: 249 LLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH-EAEYVK 306
              K  +   + P  T+ G   I + DK+ +      K  L  Q   +K+++    + ++
Sbjct: 213 AAYKLKKGEVSKPIKTEYGYHIIKLVDKKKVESFEKKKPELEQQIKRSKVDQAEANKKIQ 272

Query: 307 KLRSNAIIH 315
           K    A + 
Sbjct: 273 KELDKAKVE 281


>gi|254492046|ref|ZP_05105223.1| PPIC-type PPIASE domain protein [Methylophaga thiooxidans DMS010]
 gi|224462743|gb|EEF79015.1| PPIC-type PPIASE domain protein [Methylophaga thiooxydans DMS010]
          Length = 613

 Score = 94.7 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/384 (11%), Positives = 107/384 (27%), Gaps = 91/384 (23%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN----- 69
            L    + I F +  + SY + A S  +   +NG+ IT  ++ + +   + Q  N     
Sbjct: 1   WLIVGLISIPFALWGVNSYLTGA-SDVVVAEVNGKEITQAELQQSLQQYRDQMRNMMGEQ 59

Query: 70  --------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ---HARNTGLSAE 118
                     +++  +  LI + L +   EK G   +   ++          R+    AE
Sbjct: 60  FDPAMFEGAMVKRNVLDGLIEQQLLRDANEKLGQRINDAEISQVIRTTPAFQRDGEFDAE 119

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK----------------------------- 149
            ++  L + G     ++  L    +   + +                             
Sbjct: 120 YYNMVLARVGYSPASYEAQLRADLMSQQLTQNIETTALATEKDVRQTLRLQEQRREIAYG 179

Query: 150 ----NDFMLKYGNLEMEIPANKQKMKNITV-----------------------------R 176
                +++ +    + E+       ++                                +
Sbjct: 180 VVPVQEYVEQVSVTDDEVQQLYDNHQSNYQSPEQLKLNYIELSVATISSTLTVTEDDLKQ 239

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAE-------ESRLRLPKDCNKLEKFASKI-HD 228
            Y      F  P  +  +   ++    DA+                 +  E+ +      
Sbjct: 240 FYADNQSQFVGPQQRRASHILIEGDDNDAQTTIEAIATRLENGEDFSSLAEELSQDPGSA 299

Query: 229 VSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLGG--EIAL 284
              G   +     + P F+      ++  + + P  T+ G   I + D +   G     +
Sbjct: 300 SQGGDLGFFERDVMDPAFEEAAFALETIGDVSEPVKTEFGYHLIKLTDIKQPEGQEFSQV 359

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKL 308
           +  +       + E    +  ++L
Sbjct: 360 RDEVEKLYRRQQAESIFYDKAEQL 383



 Score = 37.7 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 35/127 (27%), Gaps = 5/127 (3%)

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS--IGKAQYLLESDLHPQFQNLLKK 252
                ++ ++  ES L+  K  N+         +      ++  +    L   F     +
Sbjct: 481 FEKASEKAREHGESVLKELKQGNQATDLLPTWQEAEFYGRESDNISMQILQRAFAMSKPE 540

Query: 253 SQNNTTNPYVTQKGVEYIA---ICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
           S +              I    + + +    E   +  L  Q T          ++  LR
Sbjct: 541 SGSKFAGFTANNGNYIVIELTAVDEGKPADVEAEDQQALKQQLTQVHANAEVQAFITSLR 600

Query: 310 SNAIIHY 316
             A I  
Sbjct: 601 EQADIEI 607


>gi|260773190|ref|ZP_05882106.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio metschnikovii CIP
           69.14]
 gi|260612329|gb|EEX37532.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio metschnikovii CIP
           69.14]
          Length = 619

 Score = 94.7 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/403 (8%), Positives = 101/403 (25%), Gaps = 91/403 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + +Y      +     +    I+ G+  +  
Sbjct: 1   MMERLREGVNSIAVKIILGLIILSFIFAGVGNYI-VGGGNNAAAKVGKTEISRGEFEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +  +                  L +  +  +I + L +Q  +  G+    N V  
Sbjct: 60  QNERNRMQSQLGDYFSTLLADPTYVASLRRSVLDSMINDILIEQHAQSLGLRVSDNQVRQ 119

Query: 105 ---FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN----------- 150
                 +           + S L + G   + F +Y+    +   +V             
Sbjct: 120 AIIAMPEFQSAGQFDQNIYQSALRRAGFTPDAFAEYMRRSLVRDQLVAALQTSEFTLPGE 179

Query: 151 ----------------------DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                 DF       + EI    Q+  +   R   +R     + 
Sbjct: 180 VEGLSALVAQARDVRTITLPTTDFAKDVQLTDQEIEQYYQQNDDRYTRPEQMRISYIELA 239

Query: 189 DNKLQNQGFV---------------------------------QKRIKDAEESRLRLPKD 215
             +L+    +                                 ++  +   +        
Sbjct: 240 AQQLKEAITITDEQTKAFYDAHQDKYASKEQRKVSHIMIQGDDEQAAQAILDQLHNGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               ++ +  I      G+  ++    +   F++     +     +    +  G   I +
Sbjct: 300 AQLAKEKSQDIGSSQEGGELGWIEPDTMDAAFESAAFALQQVGEISGLVKSDFGYHVIKL 359

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            + +   +     +   + A+    +      +   +L   A 
Sbjct: 360 DELKAPVIKPYEQVAVEIKAELQDQQAVDRFYQLQTELERIAF 402


>gi|300857299|ref|YP_003782283.1| foldase protein [Clostridium ljungdahlii DSM 13528]
 gi|300437414|gb|ADK17181.1| foldase protein precursor [Clostridium ljungdahlii DSM 13528]
          Length = 341

 Score = 94.7 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/330 (9%), Positives = 87/330 (26%), Gaps = 28/330 (8%)

Query: 13  IKLLTTYFVLIIFCIVPIVSY----KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           IK L     + +F               A+++    T+NGE IT GD+ K    ++L   
Sbjct: 4   IKRLVAAAFITVFAFSTAGCNMIEKTPEAIANSTVATVNGEKITRGDLDKDPNTIQLLSQ 63

Query: 69  NGEL------------------EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
             +                   ++  +  +I   + +Q+ ++  +  D + +     +  
Sbjct: 64  AKQQYGSDYAKNDEATSAIKTQKEQILDNMITTKVIEQKAKELKLLPDESKLKSDMDKKI 123

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
            +         +      +    F +          +          N   +      K 
Sbjct: 124 DDIKKQNFKGDTSQFDAALKAQGFTEESFKTMFLAQLKTQAIETNISNYLAKSVKVTDKQ 183

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDV 229
                     +        +        +   +  +    +        ++ +       
Sbjct: 184 IKDYYNANKDKYTEQPDKMHLAHILVKTKDEAQKVKARLDKGEDFAKVAKEVSQDTATKD 243

Query: 230 SIGKAQYLL---ESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIAL 284
             G   ++                   +   ++P  +  G   I    K++  +     +
Sbjct: 244 KGGDLGFVNYNDSGYDAQFMAGAKALKEGAISDPVQSSFGYHIIKCIKKQEYPVKDFNKV 303

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           K  +  Q    +  K  ++ V++ +  A I
Sbjct: 304 KDDIKKQLESDQKSKLVSQKVQEWKKAASI 333


>gi|307129932|ref|YP_003881948.1| peptidyl-prolyl cis-trans isomerase D [Dickeya dadantii 3937]
 gi|306527461|gb|ADM97391.1| peptidyl-prolyl cis-trans isomerase D [Dickeya dadantii 3937]
          Length = 626

 Score = 94.7 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/398 (9%), Positives = 107/398 (26%), Gaps = 87/398 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + ++ +  +    ++  F +  +  Y            +NG+ IT   + + +
Sbjct: 1   MMDNLRAAANNVVLKIILALIIGSFVLTGVGDYLIRGSGDY-AAKVNGQEITRAQLEQGV 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + ++                   +L K  + +LI ETL  Q     G+      V  
Sbjct: 60  QNERSRQQEMLGENFSALAANEGYMQQLRKQVLSQLIDETLVVQYAHTLGLNISDEQVKQ 119

Query: 105 FFV---QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
                 +   N     + + + + + G+  + + Q+L  Q +   +++            
Sbjct: 120 AIFSVPEFQTNNRFDNDKYLAQVRQLGLTPDAYAQFLRKQLLTQQLIRGLGNTDFVLQQE 179

Query: 152 -----------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS-- 186
                                          + E+     + KN  +     +       
Sbjct: 180 LDNLVAMASQDRTIRTATIDLSARARNQTVSDEEVKNFYDQNKNRYLAPEQFKVSYIMLD 239

Query: 187 -----------------IPDNKLQNQGFVQKRIKDAEESR------------LRLPKDCN 217
                              +         +++     + +             +      
Sbjct: 240 AASIMDKTKVDNADIAAYYEQHKSEFTQPERKKYSVIQLKTEADAKAALEQLKKGADFAA 299

Query: 218 KLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
             ++ ++ I    + G   ++ +     + +    K +   ++   +  G   I + D +
Sbjct: 300 LAKEKSTDIVSRRNGGDLGWMDDGSTVDEIKQAGLKQKGQLSDVIKSSVGYLIIRLDDIQ 359

Query: 277 DLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
               +    ++A L+ +    K         +K+   A
Sbjct: 360 AQHVKALDEVRADLAEKVKREKSLDAFYSLQQKISEAA 397


>gi|294678213|ref|YP_003578828.1| chaperone SurA [Rhodobacter capsulatus SB 1003]
 gi|294477033|gb|ADE86421.1| chaperone SurA [Rhodobacter capsulatus SB 1003]
          Length = 418

 Score = 94.7 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 90/277 (32%), Gaps = 2/277 (0%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +  F  LL       +                    T+NG  I+  +I++R   ++L   
Sbjct: 2   MRHFPSLLGWVLTAGLALGTAAPLQAQATGDFAPAITVNGLAISGYEIAQRARFMELLGA 61

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
            G++ K+A + LI + L+  + +  GI+     V     + A    LSAEDF   L   G
Sbjct: 62  TGDVRKMAEEALIDDRLQGWKAQSLGISVSREAVTRGMAEFAARANLSAEDFLKALAGAG 121

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDF-MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
           +    ++ ++    IW +VVK  +   +    + EI                 + ++  I
Sbjct: 122 VEAQTYRDFVTSGVIWREVVKTTYGGGRIQISDAEIDRALAHEAPKGAEPEPPKVLISEI 181

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
                  +            +     +     ++ +S       G+  ++  + L P+ +
Sbjct: 182 VIRNFPGRDAETMAKARKAAAAKTEAEFAALAKELSSAKSAGQGGRLDWMPVTALPPEVR 241

Query: 248 NLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIA 283
             +        + P  T   V    +    +      
Sbjct: 242 ETVLGLRPGRASAPVETPNSVSVFFLRGLDEGAPLTP 278


>gi|330808576|ref|YP_004353038.1| peptidylprolyl isomerase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376684|gb|AEA68034.1| putative peptidylprolyl isomerase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 623

 Score = 94.7 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/402 (11%), Positives = 113/402 (28%), Gaps = 89/402 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++ +  +    +      +S     +NGE I+  ++S+ +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIVALMALTGFDAIFKATTNSNEAAKVNGENISQNELSQAV 60

Query: 61  ALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF- 106
            + + Q +                L   A++ LI   L  Q    +   F    ++    
Sbjct: 61  DMQRRQLMQQLGKDFDASLLDEKMLRDSALKGLIDRKLLLQGAHDAKFAFSEAALDQVIL 120

Query: 107 --VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML---------- 154
              +   +   S E F   + + G     F+Q LA + +   +                 
Sbjct: 121 QTPEFQVDGKFSPERFDQVIRQLGYSRMQFRQMLAQEMLIGQLRAGLAGSGFVTDAQVLA 180

Query: 155 ---------------------KYGNLEMEIPANKQKMKNITVREYLIRT----------- 182
                                     + E+ A   +     +    +             
Sbjct: 181 FARLEKQTRDFATLNIKADPASVKLTDDEVKAYYDQHAKEFMTPDQVVIDYLELKKASFF 240

Query: 183 --------VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE-------------- 220
                    L +    ++ N    ++      E   ++ +   K +              
Sbjct: 241 DQVSVKDEDLQAAYQKEIANLSEQRRAAHILIEVNDKVTEAQAKAKIEEIQARLAKGESF 300

Query: 221 -----KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAIC 273
                +F+       + G   Y       P+F+  L   +++  + P  T  G+  I + 
Sbjct: 301 EALAKEFSQDPGSANNGGDLGYAGPGVYDPEFEKALYALNKDQVSAPVRTDFGLHLIKLL 360

Query: 274 DKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                ++    +LK  L+ +    ++E+   E  K+L   + 
Sbjct: 361 GVEAPEVPTFASLKDKLTRELKTQQVEQRFVEATKQLEDASF 402


>gi|257455283|ref|ZP_05620518.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enhydrobacter
           aerosaccus SK60]
 gi|257447245|gb|EEV22253.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enhydrobacter
           aerosaccus SK60]
          Length = 550

 Score = 94.7 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/308 (14%), Positives = 103/308 (33%), Gaps = 27/308 (8%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGELEKIAVQELI 81
           + S     +   +   +N   I    + + +A    Q            +L    + +LI
Sbjct: 133 VTSSSQDQLIDGVIAIVNDTPILRSQLDRAVAQASAQLQAQNKPVPPAQQLYPQVLDQLI 192

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS--AEDFSSFLDKQGIGDNHFKQYLA 139
            + ++   I++ G+  + N VN      A+  G++  AE       ++  G    +Q ++
Sbjct: 193 TKQIQLDLIKRQGLQAEENAVNAALTNLAQQNGVASLAEFQQKLDAQRAGGYQALRQKVS 252

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
                  + +     +    + ++    +  ++  + +   RT+   +P           
Sbjct: 253 EDLAIQTLQQQQLASRIKISDQDVDNFLKSPESNALEKSQYRTLHIRVPFIADAAGKTSD 312

Query: 200 KRIKDAEESRLRLPKDCNK---------LEKFASKIHDVSIGKAQYLLESDLHPQF-QNL 249
           K+ K A     ++ K+             +  A+    +  G   Y + ++L  +  +N+
Sbjct: 313 KQKKQALTVATQIAKNLQAENANIEQIMTDAQANYNAQIQGGDMGYHVAAELPTELSKNI 372

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNT-------PTKIEKHEA 302
                   TNP  T +G   I + DKR    +I  + +                 ++   
Sbjct: 373 TALEVGQVTNPIATAEGYNVIKLVDKRGGQQKIIDQWHTRHILISPSTALPADMAKQQID 432

Query: 303 EYVKKLRS 310
              +KLR 
Sbjct: 433 TIYEKLRQ 440



 Score = 94.4 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 51/147 (34%), Gaps = 3/147 (2%)

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSI 231
                    T    I  +        +++I    E   +          ++       + 
Sbjct: 402 QQKIIDQWHTRHILISPSTALPADMAKQQIDTIYEKLRQGEDFATLASTYSKDPGSASNG 461

Query: 232 GKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIA-LKAYLS 289
           G   ++ E D+ P F++++K++  N+ + P+ TQ G   + + +KR         K    
Sbjct: 462 GDLGWVSEGDMVPSFESMMKQTSVNDYSVPFQTQFGWHILKVDEKRQKDVSDVYRKNMAR 521

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                    +   ++++ LR+ A +  
Sbjct: 522 EILYQRMAPQALDDWMQDLRAQAYVKI 548


>gi|227537536|ref|ZP_03967585.1| peptidyl-prolyl cis-trans isomerase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227242673|gb|EEI92688.1| peptidyl-prolyl cis-trans isomerase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 458

 Score = 94.4 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/319 (11%), Positives = 104/319 (32%), Gaps = 21/319 (6%)

Query: 16  LTTYFVLIIFCIVPI--VSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ--KINGE 71
           +     +++FC++     ++    +  R+  T+   +I   DI  + +    Q    N +
Sbjct: 1   MIKQLCVLLFCVLGSINFTFAQGKIVDRVVATVGANIILQSDIDMQYSQNLAQGMSPNED 60

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
            +   +Q+L+ + L  Q+     I    + V+             A              
Sbjct: 61  FKCYILQQLLTQKLLAQQAVLDSIEVSESEVDDNLNNRLNVMTRQAGGKERLESFLNRSL 120

Query: 132 NHFKQYLAI---QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
             +K+ +     + +    ++ + + K     +E+    + +   ++  +     +  I 
Sbjct: 121 LQYKEEMRTSVAEQLKAQKMQQNIVQKIDVTPLEVKRYFEGLNKDSLPYFDTEVEIGEIV 180

Query: 189 DNK---LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHP 244
                  + +   +KR +D  +  +           ++      V+ G   +    +   
Sbjct: 181 MYPVLTKEEKEASRKRAEDLRKQIVDGSDFGTIARLYSEDKGSAVAGGDLGFSTRDNYVK 240

Query: 245 QF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP-----TKIE 298
           +F     K      +  + T+ G  ++ + ++R   GE     ++     P      + +
Sbjct: 241 EFSAVAFKLKPGEISQVFETEYGFHFLQVLERR---GEEVRARHILVSIKPTNASLERTK 297

Query: 299 KHEAEYVKKLRSNAIIHYY 317
                  +KL +   I +Y
Sbjct: 298 VKMDSLYQKLINK-KIDFY 315


>gi|299770418|ref|YP_003732444.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. DR1]
 gi|298700506|gb|ADI91071.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. DR1]
          Length = 436

 Score = 94.4 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/314 (12%), Positives = 101/314 (32%), Gaps = 20/314 (6%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAM-SSRIRTTINGEVITDGDISKRIA----LLKLQK- 67
           K L  +F       +   S  S+A  +  +   ++  VI   D+ + +A     L+ QK 
Sbjct: 4   KHLKQFFKATTLAALISSSMHSFAQPADEVVAIVDNSVILKSDLQQGMAEAAHELQAQKK 63

Query: 68  ---INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS--AEDFSS 122
                  L+   + +LI+   + ++++K GI  D  ++N   ++ A  +G          
Sbjct: 64  EVPPQQYLQFQVLDQLILREAQLEQVKKYGIKPDEKSLNEAVLKVASQSGSKSLEAFQQK 123

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
                       +  +A       + +   M +    + ++    +  +           
Sbjct: 124 LDAMAPGTYESLRGRIAEDLAISRLRQQQVMSRIKISDQDVENFLKSPQGQAALGNQAHV 183

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
           +   I  +  Q    V + ++        +      L+K ++    V      +   SD+
Sbjct: 184 IHMRITGDNPQEVQSVAQEVRSKLAQSNDINV----LKKLSTANAKVDGADMGFRPLSDI 239

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD----LGGEIALKAYLSAQNTPTKI 297
             +    +    +  TT+    + GV  + + +++              ++  Q +    
Sbjct: 240 PAELAARITPLQEGQTTDLISVRDGVHVLKLIERKQNEQKALVPQYQTRHILIQPSEVVS 299

Query: 298 EKHEAEYVKKLRSN 311
             +  + +  +   
Sbjct: 300 LDNAKQIIDNIYKR 313



 Score = 86.7 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/270 (10%), Positives = 90/270 (33%), Gaps = 6/270 (2%)

Query: 50  VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
            I+D D+   +   + Q   G    +    +  +  ++ +     +       N      
Sbjct: 158 KISDQDVENFLKSPQGQAALGNQAHVIHMRITGDNPQEVQSVAQEVRSKLAQSND-INVL 216

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
            + +  +A+   + +  + + D   +    I  +      +   ++ G   +++   KQ 
Sbjct: 217 KKLSTANAKVDGADMGFRPLSDIPAELAARITPLQEGQTTDLISVRDGVHVLKLIERKQN 276

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HD 228
            +   V +Y  R +L    +    +    ++ I +  +              +++     
Sbjct: 277 EQKALVPQYQTRHILIQPSEVVSLDNA--KQIIDNIYKRLKAGDDFATLAATYSNDTGSA 334

Query: 229 VSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE-IALKA 286
              G   ++    + P+F + + +      + P+ TQ G   + + +KR+        + 
Sbjct: 335 RDGGSLGWVTPGMMVPEFDKKMQEIPVGEISEPFQTQFGWHILQVTEKREKDMTHEYQER 394

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                    +       +++++R+NA +  
Sbjct: 395 MARQILGERQFNTEIDSWLREVRANAYVEI 424


>gi|93006523|ref|YP_580960.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter
           cryohalolentis K5]
 gi|92394201|gb|ABE75476.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter
           cryohalolentis K5]
          Length = 465

 Score = 94.4 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 57/163 (34%), Gaps = 3/163 (1%)

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
                ++I     K  N T+      T    +  ++LQ     +++I D           
Sbjct: 300 VTPEGIDIIKLANKKANDTMLVPQWNTRHILVKVDELQTDALAEQKINDLYSQLRNGAAF 359

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAIC 273
            +    ++         G   ++ E  +   F+ ++K +   + + P+ TQ G   + + 
Sbjct: 360 DSLASTYSDDPGSAGRGGDLDWVGEDQMIAPFEAMMKNTAVGDYSAPFKTQFGWHILKVE 419

Query: 274 DKRDLGGEIALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            KR        +  +           + + +++++LR+ A I 
Sbjct: 420 GKRQQDVSDEYRRTMARQALYQRLAPQAKEDWLQELRAGAYIQ 462



 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 91/301 (30%), Gaps = 22/301 (7%)

Query: 33  YKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ--------KINGELEKIAVQELIVET 84
                 +  I   +N   I   D+   IA  + +          + +L+   +  LI+  
Sbjct: 52  LTPANSTDGIIALVNENAILKSDLIAAIAQTQARAKAAGEPIANSAQLQSEVLNALILRE 111

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHAR--NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           L+   I++ G+  D  ++N    Q A+       A         Q       +  L   +
Sbjct: 112 LQLSLIKRVGLNPDEASINKRLEQIAKAEGLNSIAALQQRLDSAQSGSYATLRAQLIEDA 171

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
               + +     +    E +I A     +   + +   +TV   +P     ++    +R 
Sbjct: 172 AIQALQQRQITNRVRISEQDIDAFLASPEAKRLNQSEYQTVHVRVPYMDDYSRLSEAQRN 231

Query: 203 K--------DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-S 253
                            +           S    +  G   +   + L  +  + + K  
Sbjct: 232 DALKVAQKLRTRLLVPNVNVAEAIAASQGSYPIPLQGGDMGFHKAAALPTELSSEITKLE 291

Query: 254 QNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
               + P VT +G++ I + +K+    +        ++  +    + +    + +  L S
Sbjct: 292 VGAVSAPLVTPEGIDIIKLANKKANDTMLVPQWNTRHILVKVDELQTDALAEQKINDLYS 351

Query: 311 N 311
            
Sbjct: 352 Q 352


>gi|317499572|ref|ZP_07957835.1| ppic-type ppiase domain-containing protein [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|291559696|emb|CBL38496.1| Parvulin-like peptidyl-prolyl isomerase [butyrate-producing
           bacterium SSC/2]
 gi|316893121|gb|EFV15340.1| ppic-type ppiase domain-containing protein [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 247

 Score = 94.4 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/276 (11%), Positives = 74/276 (26%), Gaps = 38/276 (13%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFD 98
           +  I   + GE IT  D+   IA L  ++      +    + + + +      K G    
Sbjct: 3   NQNILAVVAGEEITQKDLDALIAALPKEQQAYAGNEHFRNQCLEQIITVHLFAKLGEELK 62

Query: 99  SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGN 158
                 F    A                                    + +    +    
Sbjct: 63  LEETEAFADNLAH-------------------------AKREILAQMALGEAMKDITVSE 97

Query: 159 LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
            E +      + + +       + +L    D++ + Q  ++K I +            + 
Sbjct: 98  DEAKEYYKANENQFMAGETVHAKHIL---VDDEDKCQEILEKIIGEE-------TTFEDA 147

Query: 219 LEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR- 276
            ++F++       G         +  +F++        +   P  TQ G   I + DK+ 
Sbjct: 148 AKEFSTCPSKEKGGDLGAFGRGQMVKEFEDAAFAAEVGHVVGPVKTQFGYHLIKVEDKKD 207

Query: 277 -DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            +      +   +       K        + +L+  
Sbjct: 208 AETSVYEDVADTIKNIILQQKRNDVYGNKIAELKEK 243


>gi|327480677|gb|AEA83987.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas stutzeri DSM
           4166]
          Length = 618

 Score = 94.4 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/402 (10%), Positives = 108/402 (26%), Gaps = 89/402 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++++  +    +  + A +++    +NGE I+  D+ + +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIVVLLALTGFDAIFNAASNAQNAAEVNGEEISRYDLDQAM 60

Query: 61  ALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF- 106
            + + Q                  L   A+  LI   L  Q  + +   F    ++    
Sbjct: 61  NMQRRQLAQQLGQDFDPSLLDDRLLRDAALGSLIDRMLLLQAAKGANFAFSREALDQLIL 120

Query: 107 --VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND------------- 151
              +   +   +   F   + + G     F+Q L  + +   +                 
Sbjct: 121 QTPEFQVDGAFNPARFDQVIQQMGYSRLQFRQLLEQEMLIGQLRAGISGTGFVTDQQVQN 180

Query: 152 ------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRT----------- 182
                                     + +I    +   +       +             
Sbjct: 181 FARLEMQTRDFATLTVPAQHEAIEVSDDQINEFYEANADRFRTPEQVVVEYVELKKESFF 240

Query: 183 --------VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI--- 231
                    L  +   ++ N    ++      E+   L  D  K +         +    
Sbjct: 241 DQVEASDEELQELYQKQIANLAEQRRAAHILIETGGELSDDEAKAKIDEIAARVKNGEDF 300

Query: 232 -----------------GKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAIC 273
                            G   +       P F++ L   ++   + P  ++ G   I + 
Sbjct: 301 ATVAKEVSQDPGSANEGGDLGFAGPGVYDPAFEDALYALNEGEVSAPVKSEFGWHIIKLL 360

Query: 274 DKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             +  ++    ++K  L  +    ++E+   E  K+L   A 
Sbjct: 361 GVQSPEVPSFESMKPELVRELKAQQVEQRFVETSKQLEDAAF 402


>gi|282855468|ref|ZP_06264788.1| foldase protein PrsA [Pyramidobacter piscolens W5455]
 gi|282586694|gb|EFB91942.1| foldase protein PrsA [Pyramidobacter piscolens W5455]
          Length = 303

 Score = 94.0 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/297 (12%), Positives = 78/297 (26%), Gaps = 37/297 (12%)

Query: 31  VSYKSWAMSSR-IRTTINGEVITDGDISKRIALLKLQKI----NGELEKIAVQELIVETL 85
            ++ +   + + +  T+ GE IT  D+ + ++    Q+     + E +   +  LI    
Sbjct: 18  SAFAADQNADKKVLATVAGETITQADLDQAMSGFDPQQRAAYASPEGQAQLLDNLID--- 74

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
                                           E       K      + +Q L       
Sbjct: 75  -----------------------FKVFARSGREQKLQNSPKYKEAMANLEQRLLFTLATE 111

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ--GFVQKRIK 203
            ++         + + +   ++ K             +L     N          +K   
Sbjct: 112 KILDEAGKTPATDQDAQKYYDEHKEIFQVPAAIRASHILIRADKNMPAKDQKAAQEKAAD 171

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT-NPY 261
              + +       +  +  ++       G   Y  +  + P+F+       +   T  P 
Sbjct: 172 LIRDIKAGKTTFEDAAKNNSADGTRSRGGDLGYFSKGQMVPEFEKAAFALKKGEMTAKPV 231

Query: 262 VTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            T  G   I   D RD        +K  + A     K  K   +    LR+   +  
Sbjct: 232 KTDFGYHVIKATDSRDASIRPFAEVKEDIKADLVRQKQVKAIQDERDALRARYGVKI 288


>gi|104781017|ref|YP_607515.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas entomophila L48]
 gi|95110004|emb|CAK14709.1| putative peptidyl-prolyl cis-trans isomerase D [Pseudomonas
           entomophila L48]
          Length = 619

 Score = 94.0 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/402 (12%), Positives = 117/402 (29%), Gaps = 89/402 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++++  +    +    A  S+    +NG+ I+  ++S+ +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAV 60

Query: 61  ALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF- 106
            + + Q +                L + A++ LI   L  Q  E +   F    ++    
Sbjct: 61  DMQRRQLMQQLGKDFDPALLDEKMLREAALKGLIDRKLLLQGAEDAKFAFSEAALDQLIL 120

Query: 107 --VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM--- 161
              +   +   SAE F S + + G G   F++ LA + +   +        +   +    
Sbjct: 121 QTPEFQVDGKFSAERFDSVIRQMGYGRMQFREMLAQEMLIGQLRTGLAGSSFVTDKQVEA 180

Query: 162 --------------------------EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
                                     +        ++        + V+  I   K    
Sbjct: 181 FARLEKQTRDFAALTFKADPAAVKVSDEEVKAHYDQHAKEFMTPDQVVIDYIELKKSAFF 240

Query: 196 GFV-------------------QKRIKDAEESRLRLPKDCNKLEK--------------- 221
             V                   ++R        +       + +                
Sbjct: 241 DQVKVNDDELKALYEKEIANLGEQRHAAHILIEVNDKTTDAQAKARIEEIQQRLEKGEDF 300

Query: 222 ------FASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAIC 273
                 F+       + G   +       P F++   K +++  + P  TQ G   + + 
Sbjct: 301 AKLAKAFSQDPGSANAGGDLGFAGPGVYDPTFEDALYKLNKDQVSAPVRTQFGYHLVKLL 360

Query: 274 DKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             +  D+    +LK  L+ +    ++E+   E  K+L   A 
Sbjct: 361 GVQAPDVPSFASLKDKLTRELKTQQVEQRFVEATKQLEDAAF 402


>gi|254520524|ref|ZP_05132580.1| peptidylprolyl isomerase [Clostridium sp. 7_2_43FAA]
 gi|226914273|gb|EEH99474.1| peptidylprolyl isomerase [Clostridium sp. 7_2_43FAA]
          Length = 325

 Score = 94.0 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/329 (11%), Positives = 92/329 (27%), Gaps = 31/329 (9%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVS----YKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ 66
             IK +     L IF    +          A+ + +   +    IT G++ +       Q
Sbjct: 2   IKIKKIIAAGALSIFAFSAVGCEMIQKTPEAIKNTVLAKVGDVKITKGEVDEIADPYLQQ 61

Query: 67  ------------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
                       +    L   A+  L+ E +  ++ E+ G+T     V+    ++  +  
Sbjct: 62  YGSDYDTNPNMAEQVKALRTQAINLLVEEKMMLKKAEELGVTPTKEEVDSEVQKYIESLK 121

Query: 115 LSAEDFSSFLD------KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
            S      F                         +  + V  D        + +I A  +
Sbjct: 122 ESYGGDEQFNAALEQAGMTLDEYTTKLTESMKNKLATEKVTEDLFKDVNITDEDIKAYYE 181

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
           + K+          V+         ++   ++  +                E+ A+    
Sbjct: 182 ENKDSFGEANAEHIVV--------SDEAKAKEIRERIINGEDFATVAKESSEEPAAAESG 233

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
            ++G  ++            L    +   + P  +Q G   I     +    +  +K  +
Sbjct: 234 GNLGVIKFNTTEYDQDFVAGLKALKEGEISEPVKSQFGYHIIRATKVKQGTFDE-VKDSI 292

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
                  K  +  +  +++ + +  +  Y
Sbjct: 293 KTTLENQKKNEIYSSSIEQWKKDYNVKIY 321


>gi|113867525|ref|YP_726014.1| peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16]
 gi|113526301|emb|CAJ92646.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16]
          Length = 264

 Score = 94.0 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/308 (15%), Positives = 90/308 (29%), Gaps = 51/308 (16%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           + TT     +  ++   S  + A +      +NG+ I+   + K IA    Q  N EL  
Sbjct: 1   MKTTVLSFSLAAVLAAGSLPAIAQN---AAVVNGKAISSAKLDKLIAGTG-QPDNPELRS 56

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
            A   LI   L  QE  K G+                               Q       
Sbjct: 57  RARNMLIDRELLVQEANKRGL------------------------------TQRDDVQEQ 86

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
            +   +  +   V + D++  +G  + E+     K+K+              +       
Sbjct: 87  LEQARLNVLAGAVFE-DYVKTHGASDAELRKQYDKIKSQFGNGKEYHARHILVEKEADAK 145

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKK 252
               + +            K  +  +  +       + G   +   S   P+F   +   
Sbjct: 146 AIIAKIK---------GGAKFEDMAKASSKDPGSAANGGDLDWANSSSYVPEFSAAMTGL 196

Query: 253 SQNNTTN-PYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTK--IEKHEAEYVKK 307
            +   T+ P  TQ G   I + D RD        +K  L+      +    +     +K 
Sbjct: 197 KKGQLTDTPVKTQFGWHIIELVDVRDAKIPSFEEVKPQLTQMLMGDQNWQREQFQAMMKS 256

Query: 308 LRSNAIIH 315
           L+  A I 
Sbjct: 257 LKDKAKIQ 264


>gi|114566203|ref|YP_753357.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114337138|gb|ABI67986.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 324

 Score = 94.0 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/309 (12%), Positives = 85/309 (27%), Gaps = 35/309 (11%)

Query: 33  YKSWAMSSRIRTTINGEVITDGDISKRIALLKL---------------------QKINGE 71
             +   +S     +N E+IT     K    LK                       ++   
Sbjct: 20  GCNDKKASPSIAEVNSEIITQEQYDKACQNLKQAYEVQNPAQSGDKADSSGKIDSEMEKR 79

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           L+  A   L+++ L +Q+ EK GI      ++        N     +D      ++   +
Sbjct: 80  LQDQAFDSLVMQALLRQDAEKRGIKIKEKEIDVAIDSFKANLAAEGKDAYQKFLQENNLN 139

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
               +  A   +  + ++          E E+    Q+          ++          
Sbjct: 140 EKELREEARMQLLVNQLQKKINASITIEEEELQQYYQENIASFQEAAGMQISHIL----- 194

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD--LHPQFQNL 249
                   K  ++      +        ++ +S       G    + E+   +       
Sbjct: 195 ----VATDKEARELLTQLQQGADFAQLAQEHSSCASKAQGGYLGVVNENSNYVPEFKNAA 250

Query: 250 LKKSQNNTT-NPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVK 306
           L+      T  P  +  G   I     +         +K  +  Q    K     ++Y++
Sbjct: 251 LQLKAGEITQEPVKSDFGYHIIKAGQLQPTTTKSFDEVKNQIRMQLEKEKENTLFSQYME 310

Query: 307 KLRSNAIIH 315
            LR  A I 
Sbjct: 311 DLRQQAQIK 319


>gi|330996060|ref|ZP_08319954.1| PPIC-type PPIASE domain protein [Paraprevotella xylaniphila YIT
           11841]
 gi|329574057|gb|EGG55635.1| PPIC-type PPIASE domain protein [Paraprevotella xylaniphila YIT
           11841]
          Length = 459

 Score = 94.0 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/302 (10%), Positives = 89/302 (29%), Gaps = 17/302 (5%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           ++ F KLL  +  L     + + +     +   +   +  E I   D+           I
Sbjct: 1   MNLFKKLLYAFVFLFGGIQMHLFAQSPNNVVDEVIWVVGDEAILRSDVEAARMDFGA-NI 59

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
           +G    +  ++L ++ L   + +   +  D++ ++           + A       +   
Sbjct: 60  SGNPYCVIPEQLAIQKLFLHQAQLDSVEVDNSQISASMEARLNELIMRAGSKEKLEEYYH 119

Query: 129 IGDNHFKQYLAIQSIWP---DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
                 ++ +            V+ +          E+    + M   ++     +  + 
Sbjct: 120 KTMTQIREMMFESLKEQYTVQKVRENLTSDIKVTPAEVRRYFKDMPEDSLPWISDQVEVQ 179

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS-----IGKAQYLLES 240
            I       Q  +++   +  +   R+    +     A    +        G+  Y+   
Sbjct: 180 IITQQPRIPQEEIERVKAELRDYTDRVNNGESSFSTLAILYSEDPGSARYGGEMDYVGRG 239

Query: 241 DLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE 298
           +L P F N+          +    ++ G   I + DKR    +      +       K+ 
Sbjct: 240 ELDPAFANVAFSLTDPKKISKVVESEYGFHIIQLVDKRGDKVK------VRHILRKPKLA 293

Query: 299 KH 300
           + 
Sbjct: 294 QA 295


>gi|323498280|ref|ZP_08103282.1| peptidyl-prolyl cis-trans isomerase D [Vibrio sinaloensis DSM
           21326]
 gi|323316708|gb|EGA69717.1| peptidyl-prolyl cis-trans isomerase D [Vibrio sinaloensis DSM
           21326]
          Length = 619

 Score = 94.0 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/403 (8%), Positives = 94/403 (23%), Gaps = 91/403 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + SY      +     +    I  G+  +  
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVGGAGNT-AAKVGNVEIGRGEFEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                       K  +  ++ + L +Q  E  G+      V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPSYVESFRKSVLDRMVNDLLIEQHAETLGLRVSDAQVRT 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFK---QYLAIQSIWPDVVKN----------- 150
             V+  +       D   +           +   +YL    +   ++             
Sbjct: 120 MIVEMPQFQADGKFDQDIYQASLRRAGFTPESFAEYLRRDLVRNQLLTAIQASDFSLAAE 179

Query: 151 ----------------------DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                 DF  K    E +I A  ++      R   ++     + 
Sbjct: 180 VEAQAKLLTQTREVETLTLPLSDFAAKVKLSEEDIQAYYEQNPQRYTRPEQVKVAYIELA 239

Query: 189 DNKLQNQGFV---------------------------------QKRIKDAEESRLRLPKD 215
             +L++   +                                 Q + +   +        
Sbjct: 240 AQQLKDAITISEEQAKKYYDEHLDKYSSEEQRRVSHILVEGDDQAKAQAILDELNAGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               E+ +         G   ++    + P F+       +    T    +  G   I +
Sbjct: 300 ATLAEEKSDDFGSASEGGSLGWIERDVMDPAFEEAAFGLNNVGEVTELVKSDFGYHIIKL 359

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            + +         + A +  +    +      E   +L   A 
Sbjct: 360 DELKASVAKPYTEVAAEIKQELKDQQAIDQFYELQSELEKVAF 402


>gi|188590380|ref|YP_001919599.1| peptidylprolyl isomerase [Clostridium botulinum E3 str. Alaska E43]
 gi|188500661|gb|ACD53797.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
           E3 str. Alaska E43]
          Length = 343

 Score = 94.0 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/350 (8%), Positives = 86/350 (24%), Gaps = 51/350 (14%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
              +   +  +    +        ++     A+ + +  T+  E IT GD+ + +  +  
Sbjct: 1   MNKIKKIVASVVVATLAFSIVGCKMIEKTPEAIKNTVLATVGKEKITQGDLDRDLKSITE 60

Query: 66  QKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
                                EL+   +  ++ E +   +  +  +      +N    + 
Sbjct: 61  SLKQKYGENYESNADIKDQLKELKTQYLNAIVNEKVILAKSAELNLRPSDEELNKDVDEA 120

Query: 110 ARNTGLSAEDFSSFLDK--QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
                 + +    +     Q        +           V  D +      + +I    
Sbjct: 121 VSYYKTAYQTEEQYNTFLEQNGFTEDEFKEYQKNQAIVRYVYQDMVKDVEVNDEDIQKYY 180

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI- 226
            + K+                     +     ++  + +             ++ +    
Sbjct: 181 DENKDTQ------------FSTPGEIDFDKSLQQANEIKSQLDGGADFAEVAKEKSQDPG 228

Query: 227 HDVSIGKAQYLLESD---LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE-- 281
              + G   ++  S    +           +   + P  +Q G   I +   +D G +  
Sbjct: 229 TKGNGGSLGFIEYSSTKYVKEFMDGFKDLKEGEISQPIKSQFGYHIIKVTGVKDDGADVA 288

Query: 282 ---------------IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                            +K  +  Q    K      E +++ +    +  
Sbjct: 289 HILVADKGEGTVTPLEDVKEDIRGQLLQKKQSDVFNEKIEEWKKEVGVKI 338


>gi|157962498|ref|YP_001502532.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella pealeana
           ATCC 700345]
 gi|157847498|gb|ABV87997.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella pealeana
           ATCC 700345]
          Length = 621

 Score = 94.0 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/402 (10%), Positives = 97/402 (24%), Gaps = 95/402 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+       I       V++ F    + SY   +       T+NGE I++  + +  
Sbjct: 1   MLEKIREGSQGVIAKSILILVILSFAFTGVSSYLGSSTEVA-AATVNGEEISNSALEQAY 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     +++  ++ L+ E L  Q   + G+      +  
Sbjct: 60  QNERSRLEQQLGDMFATLSADDNYMQSVKQSVLERLVAEKLLDQNAAELGLRVSDEQIKA 119

Query: 105 FFVQ---HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK------ 155
             +       +     + + + L + G   N F+  + I      +V      +      
Sbjct: 120 AIMSEPAFQTDGAFDNDRYQAILRQLGYQANSFRDMMRIDMTRRQLVATLVGSEFVLPSE 179

Query: 156 ---------------------------YGNLEMEIPANKQKMKNITVREYLIRTVLFS-- 186
                                          + +I A         +R  ++        
Sbjct: 180 AKYVADLQGQTRDIDYKVIDATPFLADISVTDEQIKAYYDTNLGQFIRPEVVSLNYIELD 239

Query: 187 -----------------IPDNKLQNQGFVQKRIKDAE-------------------ESRL 210
                              D    N    +KR+                       +   
Sbjct: 240 AKDLAKDVTVTDAEAQAYYDEHKANYTQAEKRLAAHILVQSGDDDAAAKAKAEAIYKQLQ 299

Query: 211 RLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVE 268
                    +  +         G+  +     + P+F   L   ++   +    T  G  
Sbjct: 300 DGADFAELAKTESEDTFSGEQGGQLDWFEAGVMEPEFDTALFALNKGEYSGVVKTNFGYH 359

Query: 269 YIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
            I   D     G  A  A +  +      +K   +   +L+ 
Sbjct: 360 IIKALDI--QAGAQAPFADVKEKILAQLKDKQAVDKFYELQQ 399


>gi|39997172|ref|NP_953123.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Geobacter sulfurreducens PCA]
 gi|39984062|gb|AAR35450.1| PPIC-type PPIASE domain protein [Geobacter sulfurreducens PCA]
 gi|298506185|gb|ADI84908.1| peptidylprolyl cis-trans isomerase, PpiC-type [Geobacter
           sulfurreducens KN400]
          Length = 321

 Score = 94.0 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/328 (12%), Positives = 92/328 (28%), Gaps = 34/328 (10%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRT--------TINGEVITDGDISKRIALLK 64
           +K +    + I+  +  + S      +              +NG VI   ++   +    
Sbjct: 1   MKTVRNLIITILCLLGSVPSAPGAETA---VAPSGRAAAAVVNGAVIFRDELDHFVEFAL 57

Query: 65  LQK----------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
            ++              +E+  + +LI   L  Q  EK     +   ++          G
Sbjct: 58  SRRRGAGRKVTDEQKKRVERQELDKLIAMELLAQAGEK----LNPADLSKKIQARREAIG 113

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
            S     S +       N          +    + +  +      E ++ A  +K K+  
Sbjct: 114 SSVSRGGSVVAPSEDRLNDT---ARRDVLVDAYLASRGIDAIKVPETDLRAYYEKNKSGF 170

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL---EKFASKIHDVSI 231
            +   I      +   K  +     +  K  E  R R+    +      + +        
Sbjct: 171 KKPETIAVRHILVKVEKEASPETQAEARKKIEGIRDRIGAGADFAVLASESSDCASAAKG 230

Query: 232 GKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGG--EIALKAYL 288
           G    +    +  +F  +        T+    T  G   I + ++          ++ ++
Sbjct: 231 GDLGEIQRGFMPREFDQVAFSLKPGETSGIVKTHHGFHIIRVMERHPETVRTFEEMRDFI 290

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                     K   E V++L+  A I  
Sbjct: 291 EQYLAKDYQRKKVEEIVEELKRAATIDI 318


>gi|297564584|ref|YP_003683556.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus silvanus
           DSM 9946]
 gi|296849033|gb|ADH62048.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus silvanus
           DSM 9946]
          Length = 632

 Score = 94.0 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/324 (11%), Positives = 97/324 (29%), Gaps = 10/324 (3%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK-R 59
           +  +V T +  F+ L       I+F +    +             +NG  +++ ++++ +
Sbjct: 4   INKRVITIIFGFLALAFLVGATILFALQGGGNLSGNRSQGPTVMWVNGRPVSELELARIQ 63

Query: 60  IALLKLQKINGELEKIAVQELIVETLKKQEIEKS---GITFDSNTVNYFFVQHARNTGLS 116
                L      L K  +    +E +   +  +     I      V        +  G +
Sbjct: 64  SRDPLLSSNPQGLMKPLLDTFFLEQVILTKAVQQDSSRIRVSGGEVRKALDDLKQRAGAT 123

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            ++    L  Q    +   +     S+       +   K      E+       K     
Sbjct: 124 TKEQYDQLLNQIGYTDSQLRDELRDSLKVQKRVEEIQKKATPTPEEVKFYFDLNKANYKT 183

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG-KAQ 235
           E  ++     + D KL +   +  ++K   +      K+          +   +   +  
Sbjct: 184 EDRVKARQIVVDDKKLAD--DLYAQLKAGADFVELAKKNSKVAADQGGALGAETGKSEPG 241

Query: 236 YLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQN 292
           ++       +  + + K  Q   T P  +      + + + +         +K  ++   
Sbjct: 242 FVTRVIFPSEVADAVFKLKQGGLTAPIASGGRYYIVKVEEFKPGGDPNFEEVKDRVAEDV 301

Query: 293 TPTKIEKHEAEYVKKLRSNAIIHY 316
              K ++    Y+ +LR    + +
Sbjct: 302 KKIKGDQALEAYLLELRKKTQVRF 325



 Score = 65.5 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/308 (8%), Positives = 62/308 (20%), Gaps = 73/308 (23%)

Query: 30  IVSYKSWAMSSRIRTTINGEVI----------TDGDISKRIALLKLQKINGELEKIAVQE 79
                ++   + +   +    I          T+  I + I               A+++
Sbjct: 325 FAENTTYKYENPVVAKVGESEIKLPELTQLVFTNQQIPQLIQQGLGDLAVQFFMPQALEQ 384

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           LI   +   E +K                                               
Sbjct: 385 LITREILVSEAKKIN--------------------------------------QPFVGAR 406

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
            Q      V+          + E+     +                    +  +      
Sbjct: 407 DQIARE--VQAYHTKDITVTDEEVRKYYAENPASFTIPASAEV----KGISFKKEDEAKA 460

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ--------NLLK 251
           K  ++A     +L              +  ++     +    L P           N  K
Sbjct: 461 KAFREAALKGGKLEDLAKA--------NGGTVTDYGKVNPGTLPPVANRLVFLTKGNFPK 512

Query: 252 KSQNNTTNPYVTQKG-VEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
                 +       G  + + + ++    L     +      Q    K  K    +V +L
Sbjct: 513 GPLGEVSEVVKLDDGSYQVLIVNNRVAEKLKPFEEVADQAREQVLAQKRSKAAQAWVAEL 572

Query: 309 RSNAIIHY 316
           R    +  
Sbjct: 573 RKQTKVEN 580


>gi|149201836|ref|ZP_01878810.1| PPIC-type PPIASE domain [Roseovarius sp. TM1035]
 gi|149144884|gb|EDM32913.1| PPIC-type PPIASE domain [Roseovarius sp. TM1035]
          Length = 414

 Score = 94.0 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/279 (11%), Positives = 100/279 (35%), Gaps = 7/279 (2%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIR---TTINGEVITDGDISKRIALLKL 65
           ++   + L     L +  ++        A +  +      +N + IT  ++ +R  LL L
Sbjct: 1   MTPIFRRLIAALTLAVTGLLVWPLSGGMAQAQNLFSPQIYVNDQAITGYELQQRARLLTL 60

Query: 66  QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
            +  G+ +++A ++LI E +K      SG+  + + V     + A    ++A+   + L 
Sbjct: 61  FRAPGDPQRLAREQLIEERIKIDAARASGLVLEEDLVRDGMEEFAGRANMTADQLIAALG 120

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
             G+    F++++     W ++ +  F  +    E ++    + +        L+  ++ 
Sbjct: 121 DSGVSQESFREFVRAGITWRELTRARFAARVSVSEDDLERATRALTGGAAVRVLLSEII- 179

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ 245
                        ++ +  +               + ++       G+  ++  S+L   
Sbjct: 180 --LPVTSLEDAEAKQALAASIAESTSEGAFAEAARRHSAAPSSSRGGRMDWVALSELPAG 237

Query: 246 FQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIA 283
            + ++   +    ++P   +  +    + D  ++     
Sbjct: 238 LRPIVLGLAPGEVSDPLPLEGALALFYMRDIEEMTVPSP 276



 Score = 40.8 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 4/84 (4%)

Query: 235 QYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKG--VEYIAICDKRDL-GGEIALKAYLSA 290
                 ++       L       T+       G  + ++ +C +     GE      LS 
Sbjct: 328 GSKAPEEIPQDIAIALASLDPGETSTSVTRANGQTLVFLMLCGRSPKLDGEAPSVEDLSN 387

Query: 291 QNTPTKIEKHEAEYVKKLRSNAII 314
                +IE     Y+++LR+ A I
Sbjct: 388 FIRNQRIESFANGYLEQLRAEARI 411


>gi|146282422|ref|YP_001172575.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas stutzeri A1501]
 gi|145570627|gb|ABP79733.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas stutzeri A1501]
          Length = 618

 Score = 94.0 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/402 (10%), Positives = 108/402 (26%), Gaps = 89/402 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++++  +    +  + A +++    +NGE I+  D+ + +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIVVLLALTGFDAIFNAASNAQNAAEVNGEEISRYDLDQAM 60

Query: 61  ALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF- 106
            + + Q                  L   A+  LI   L  Q  + +   F    ++    
Sbjct: 61  NMQRRQLAQQLGQDFDPSLLDDRLLRDAALGSLIDRMLLLQAAKGANFAFSREALDQLIL 120

Query: 107 --VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND------------- 151
              +   +   +   F   + + G     F+Q L  + +   +                 
Sbjct: 121 QTPEFQVDGAFNPARFDQVIQQMGYSRLQFRQLLEQEMLIGQLRAGISGTGFVTDQQVQN 180

Query: 152 ------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRT----------- 182
                                     + +I    +   +       +             
Sbjct: 181 FARLEMQTRDFATLTVPAQHEAIEVSDEQINEFYEANADRFRTPEQVVVEYVELKKESFF 240

Query: 183 --------VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI--- 231
                    L  +   ++ N    ++      E+   L  D  K +         +    
Sbjct: 241 DQVEASDEELQELYQKQIANLAEQRRAAHILIETGGELSDDEAKAKIDEIAARVKNGEDF 300

Query: 232 -----------------GKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAIC 273
                            G   +       P F++ L   ++   + P  ++ G   I + 
Sbjct: 301 ATVAKEVSQDPGSANEGGDLGFAGPGVYDPAFEDALYALNEGEVSAPVKSEFGWHIIKLL 360

Query: 274 DKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             +  ++    ++K  L  +    ++E+   E  K+L   A 
Sbjct: 361 GVQSPEVPSFESMKPELVRELKAQQVEQRFVETSKQLEDAAF 402


>gi|332701510|ref|ZP_08421598.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332551659|gb|EGJ48703.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 631

 Score = 94.0 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/212 (12%), Positives = 57/212 (26%), Gaps = 9/212 (4%)

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
                     S E+ + + ++         Q      ++                 E+  
Sbjct: 196 LEDFTAQASPSEEEIAGYYEQNKARFTLPAQARISYLLFSA---EQMARPEQVPAEEVRQ 252

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP---KDCNKLEKF 222
             +   +   R+  +R     +   K   Q  V       E+ R ++       +  +KF
Sbjct: 253 YYEAHADKFQRQEEVRASHILVKVAKDAPQEEVDTAKAKIEDIRKKITGSLSFADAAKKF 312

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           +      + G   +     + P F+           + P  T+ G   I + ++R+ G  
Sbjct: 313 SEGPSGPAGGDLGWFGRGRMVPTFEQAAFALKPGQVSAPVRTEFGWHIIKLEERREPG-- 370

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
               A + +           A  V      A 
Sbjct: 371 QIPLAEVESDIRAELARDTAASLVGDALDEAT 402



 Score = 39.7 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 263 TQKGVEYIAICDKRDLGGEI--ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           + KG     +            + K    A  T ++ ++    +++ LRS A I  
Sbjct: 569 SPKGWYVAKLDALIPAPESEWQSQKDMWVAALTQSREQELYQAFIESLRSEAKIEI 624


>gi|254444073|ref|ZP_05057549.1| PPIC-type PPIASE domain protein [Verrucomicrobiae bacterium DG1235]
 gi|198258381|gb|EDY82689.1| PPIC-type PPIASE domain protein [Verrucomicrobiae bacterium DG1235]
          Length = 326

 Score = 94.0 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/325 (10%), Positives = 100/325 (30%), Gaps = 22/325 (6%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAM-----SSRIRTTINGEVITDGDISKRIALLKLQKI- 68
           ++    +LI   I   +S+   A      ++ I      ++IT  ++ + +     Q   
Sbjct: 1   MIKKATLLISLFIPLALSFAQSAPKGARLANSIAAIAEEKIITVEEVRRELQPFLPQIQA 60

Query: 69  ------------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA-RNTGL 115
                         E+E   +Q L    L  ++  +      ++ V+    +        
Sbjct: 61  DSKGDPMKFRQLIEEMETDIIQNLTDNVLIVKQFYEDKGQIPASFVDNEIEETIITKFEG 120

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
               +  +L   G   +  +  +  + I   +             + I     + K    
Sbjct: 121 KRSLYLDYLKSIGKTPDEHRMMIKEEIIVNYMRSKMRKSASVVSPVRIEKFYDEYKQEFF 180

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
           +E  I   L  +     ++   +++   +  E             K+++       G   
Sbjct: 181 QEEAIHLRLIRLTKLADESDDVLKQTADEIYEKLELGFAFDELASKYSNDAKAKKGGDWG 240

Query: 236 YLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQN 292
           ++ +  L  +        ++ + + P   +  +  +   + R  G      ++  +    
Sbjct: 241 WVTKGSLIEELSTPAFAMTEGDYSEPITIKNNLFILYCEEHRPEGYMPLPDVREDIEDIL 300

Query: 293 TPTKIEKHEAEYVKKLRSNAIIHYY 317
                 + EA+++++LR +  +  +
Sbjct: 301 ISQMAREAEAKFLERLRRDGYVRRF 325


>gi|86148518|ref|ZP_01066806.1| peptidyl-prolyl cis-trans isomerse D [Vibrio sp. MED222]
 gi|85833709|gb|EAQ51879.1| peptidyl-prolyl cis-trans isomerse D [Vibrio sp. MED222]
          Length = 621

 Score = 94.0 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/403 (9%), Positives = 99/403 (24%), Gaps = 91/403 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + SY      +     +    I  G+  +  
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYI-TGGGNNAAAKVGNTEIARGEFEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +  +                    K  +  +I + L +Q+ E  G+    + +  
Sbjct: 60  QNERNRMQSQLGDYFAQMLADPTYVESFRKSVLDRMINDVLLEQQAESLGLRISDSQIRT 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
             ++  +         E + S L + G     F +Y+    +   +V             
Sbjct: 120 MILEMPQFQTAGQFDQEVYQSALRRAGFSAESFAEYMRRDLMRNQLVTALQGSEFVLQGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                 D        + +I    Q+      R    +     + 
Sbjct: 180 IDIQSKLIAQTRDIRTVTLSVADLAKNIELTDEQIELYYQENPAAYTRPEQAKVSYIELS 239

Query: 189 DNKLQNQGFV---------------------------------QKRIKDAEESRLRLPKD 215
              L++Q  V                                 + + +   +        
Sbjct: 240 AEALKSQLEVSDEEAQKYYQEHLDKYSTEEQRKVSHILVQGDDEAKAQSILDELNAGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               E+ +         G   ++    + P F++      +  +TT    +  G   I +
Sbjct: 300 ATLAEEKSDDFGSADVGGDLGWIERDVMDPAFEDAAFALVNIGDTTGLVKSDFGYHIIKL 359

Query: 273 CDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            + +         + A +  +           E   +L   A 
Sbjct: 360 DELKASQAQPYTEVAAEIKTELLDQHAVDQFYEQQTELEKVAF 402


>gi|187932868|ref|YP_001884407.1| peptidylprolyl isomerase [Clostridium botulinum B str. Eklund 17B]
 gi|187721021|gb|ACD22242.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
           B str. Eklund 17B]
          Length = 343

 Score = 94.0 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/350 (7%), Positives = 85/350 (24%), Gaps = 51/350 (14%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
              +   +  +    +        ++     ++ + +  T+  E IT GD+ + +  +  
Sbjct: 1   MNKIKKIVASVVVATLAFSIVGCKMIEKTPESIKNTVLATVGKEKITQGDLDRDLKSITE 60

Query: 66  QKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
                                EL+   +  ++ E +   +  +  +      +N    + 
Sbjct: 61  SLKQKYGENYESNADIKDQLKELKTQYLNAIVNEKVILAKSTELNLRPSDEELNKEVDEA 120

Query: 110 ARNTGLSAEDFSSFLDK--QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
                 + +    +     Q        +           V  D +      + +I    
Sbjct: 121 VNYYKTAYQTEEQYNAFLEQNGFTEDEFKEYQKNQAVVRYVYQDMVKDVEVNDDDIQKYY 180

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI- 226
            + K                      +     ++  + +             ++ +    
Sbjct: 181 DENKETQ------------FSTPGEIDFDKSLQQANEIKSQLDGGADFSEVAKEKSQDPG 228

Query: 227 HDVSIGKAQYLLESD---LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD------ 277
              + G   ++  S    +           +   + P  +Q G   I +   +D      
Sbjct: 229 TKDNGGSLGFIEYSSTKYVKEFMDGFKDLKEGEISQPIKSQFGYHIIKVTGVKDDGAEVA 288

Query: 278 -----------LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                      +     +K  +  Q    K      E +++ + +  +  
Sbjct: 289 HILVADKGEGTVTPLEDVKEDIRGQLLQKKQSDVFNEKIEEWKKDVGVKI 338


>gi|189502175|ref|YP_001957892.1| hypothetical protein Aasi_0785 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497616|gb|ACE06163.1| hypothetical protein Aasi_0785 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 445

 Score = 94.0 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/312 (8%), Positives = 97/312 (31%), Gaps = 14/312 (4%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           ++   K+L     +       +       +  ++  +++ + I   ++     L + Q  
Sbjct: 1   MNTASKILWIAIGVFFTQHTLMAQTPQGRLLDKVIASVDDQPILQSELDAEYQLYQAQDN 60

Query: 69  --NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR---NTGLSAEDFSSF 123
                 +   ++ +++  +      K  I   +  V+ +     +       +      +
Sbjct: 61  ASKKPTKCQVLENMVINKILLANAAKKEINVKNGEVDRYLKYRMQAILEEVGTEARLEQY 120

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL---I 180
           + K         +    + +  + +++  +       +E+ +   ++    V  +     
Sbjct: 121 IRKPIHVFKEELRKSIREQLTIEKMRDSIIGNITISPIEVQSYFDQLPASDVPFFPATVE 180

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
              L   P  + Q +  V + +   +              +++  I    + G+  +   
Sbjct: 181 AYQLVLFPSIEEQEKKLVIENLASLKTRIQAGESFAVLARQYSEDIGSASNGGELGFWRI 240

Query: 240 SDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE 298
            +L   ++      +    + P  T+ G   I + +K+    +     ++  +    K+ 
Sbjct: 241 GELDSSYEKAALALNPGEISEPVETRFGFHIIQLIEKQK---DKYNTRHILLKPLAAKVS 297

Query: 299 -KHEAEYVKKLR 309
            +   E +  +R
Sbjct: 298 IEEAIERINNIR 309



 Score = 38.5 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 76/290 (26%), Gaps = 24/290 (8%)

Query: 45  TINGEVITDGDISKRIALLKLQKING-----ELEKIAVQELIVETLKKQEIEKSGITFDS 99
            I    I+  ++      L    +       E  ++ +   I E  KK  IE        
Sbjct: 149 IIGNITISPIEVQSYFDQLPASDVPFFPATVEAYQLVLFPSIEEQEKKLVIENLASLKTR 208

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
                 F   AR         S+  +                ++       +       +
Sbjct: 209 IQAGESFAVLARQYSEDIGSASNGGELGFWRIGELDSSYEKAALAL-----NPGEISEPV 263

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
           E     +  ++      +Y  R +L      K+  +  +++          +        
Sbjct: 264 ETRFGFHIIQLIEKQKDKYNTRHILLKPLAAKVSIEEAIERINNIRTSILEKQVTFEKAA 323

Query: 220 EKFASK-IHDVSIGKAQYLLES-DLH------PQFQNLLKKSQNNTTNPYV-TQKGVE-- 268
             ++         G      E   +         F  L K +  + + P V T  G +  
Sbjct: 324 MSYSQDIATAHQGGLLTGNSEGVQMPVDKLPSDVFFILDKMAPGDVSRPIVFTIDGKQAA 383

Query: 269 -YIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             I + ++              +       K ++   E+++  ++ AII 
Sbjct: 384 CIIYLKERIASHQANFGQDYEKIHKLALAYKKQRILNEWIEAAKAKAIIQ 433


>gi|33602778|ref|NP_890338.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella
           bronchiseptica RB50]
 gi|81713941|sp|Q7WCX5|PLP1_BORBR RecName: Full=Probable parvulin-type peptidyl-prolyl cis-trans
           isomerase; Short=PPIase; AltName: Full=Rotamase; Flags:
           Precursor
 gi|33577220|emb|CAE35777.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella
           bronchiseptica RB50]
          Length = 258

 Score = 93.6 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/305 (16%), Positives = 99/305 (32%), Gaps = 52/305 (17%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ--KINGELE 73
           +    +L   C++ + ++           T+NG+ IT   + + + L+  Q    + +L 
Sbjct: 1   MKRIAMLAAACVIAVPAFAQN------VATVNGKPITQKSLDEFVKLVVSQGATDSPQLR 54

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           +   QE+I   +  Q  EK G+   ++                                 
Sbjct: 55  EQIKQEMINRQVFVQAAEKDGVAKQADVQTEI---------------------------- 86

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
               LA Q I    +  D++ K+   + ++ A  +K+K     +   +     + D K  
Sbjct: 87  ---ELARQGILVRALMADYLQKHPVTDAQVKAEYEKIKKEQAGKMEYKVRHILVEDEKTA 143

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK 252
           N    Q +            K  +  +K +         G   +   ++    F   + K
Sbjct: 144 NDLLAQVKSNK--------SKFDDLAKKNSKDPGSAERGGDLGWAPATNYVQPFAEAVTK 195

Query: 253 SQNN--TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
            +       P  TQ G   I + D R +  E      +  Q      ++  A Y K+LR 
Sbjct: 196 LKKGQLVDKPVQTQFGWHVIQVDDTRPV--EFPAMDQVRPQLEEMLRQQTLANYQKQLRE 253

Query: 311 NAIIH 315
            A I 
Sbjct: 254 QAKIQ 258


>gi|295702743|ref|YP_003595818.1| foldase protein PrsA [Bacillus megaterium DSM 319]
 gi|294800402|gb|ADF37468.1| foldase protein PrsA [Bacillus megaterium DSM 319]
          Length = 307

 Score = 93.6 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/308 (11%), Positives = 89/308 (28%), Gaps = 33/308 (10%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN 69
              + L T   ++ +          +   SS++        IT GD+ K++     Q   
Sbjct: 3   KSLVALTTAASLVALSACSGGNDASNANDSSKVIVETKAGNITQGDLYKQMKDTIGQDQF 62

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
             L +   +E ++                   ++          G   +           
Sbjct: 63  NTLVRSVTEEKVLSK---------KYKVTDKELDQQLNILREQYGDQVDSV--------- 104

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                ++ +        + +          + E+     + K    +      ++     
Sbjct: 105 IKQKGEKEVKDMLKVDILREKAATAGIKVSDKELKKAYDEYKAQKPQIRASHILV----- 159

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQN 248
                    +K   + E    +     +  +++++      + G   Y  E  +  +F+ 
Sbjct: 160 -------KDEKTANEVEAKIKKGEDFASLAKEYSTDQQSAANGGDLGYFGEGQMVKEFEE 212

Query: 249 LLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH-EAEYVK 306
              K  +   + P  T+ G   I + DK+ +      K  L  Q   +K+++    + ++
Sbjct: 213 AAYKLKKGEVSKPIKTEYGYHIIKLVDKKKVESFEKKKPELEQQIKRSKVDQAEANKKIQ 272

Query: 307 KLRSNAII 314
           K    A +
Sbjct: 273 KELDKAKV 280


>gi|120610416|ref|YP_970094.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
           AAC00-1]
 gi|120588880|gb|ABM32320.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
           AAC00-1]
          Length = 642

 Score = 93.6 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/406 (8%), Positives = 99/406 (24%), Gaps = 102/406 (25%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK-- 58
           M   +       + ++    ++  F +V I     +   S +   ++G  IT  D     
Sbjct: 1   MFESIRKHSKVVM-IVLFLLIIPSFVLVGID-RNYFTSKSAVVARVDGHDITQDDWDNAH 58

Query: 59  RIALLKLQKINGEL----------EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
           R+   +++  +  +              ++ L+ + + +    K  +      +      
Sbjct: 59  RMETDRIRAQSPSVDARLLDSPRARYATLERLVRDRVMQAAAVKMHLVTSDAQLARTLQG 118

Query: 109 HAR-------NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                     +  L AE + + +  QG+    F+  +  +     V+             
Sbjct: 119 IPAIAALKRPDGSLDAEAYRALVGSQGLTPEGFESNVRRELSLSQVMGGVLGSAFAGQEP 178

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYL--------- 179
                                 DF  K    + E+ +  +  +    +            
Sbjct: 179 ARLALDALYQRREIQVARFDAKDFAAKVAPTDDELQSYYKAHEAQFRQPEHADVQYVVLD 238

Query: 180 -------------IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
                             +     +L  +   +         +     D  K    A  +
Sbjct: 239 LDAVRASITLSEDDLRSYYKENLERLAGKEERRASHILINAPKDAPAADREKARARAQAL 298

Query: 227 -----------------------HDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYV 262
                                     S G   +    D+   F++      + + ++   
Sbjct: 299 LEQVRKAPGTFAEVARKNSQDTGSAPSGGDLGFFKRGDMVKPFEDAAFSMKKGDISDLVE 358

Query: 263 TQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
           ++ G   I + D +           + A+      ++       +L
Sbjct: 359 SEYGYHIIQLNDVK--TPRQPTFEEVRAKLETEAKQQQAQRKFAEL 402


>gi|330829914|ref|YP_004392866.1| peptidylprolyl cis-trans isomerase D [Aeromonas veronii B565]
 gi|328805050|gb|AEB50249.1| Peptidylprolyl cis-trans isomerase D [Aeromonas veronii B565]
          Length = 637

 Score = 93.6 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/408 (8%), Positives = 98/408 (24%), Gaps = 96/408 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+       +  +    +++ F +  + SY +   +     T+NG  I+   +    
Sbjct: 2   MLDKLREGAQGKVAKVILGLIILSFALAGVGSYLN-GPARTAPATVNGTEISAAALENAY 60

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +  +                 +  +  +  LI + L   +  + G+      +  
Sbjct: 61  RNERARMESQMGEAFSQLAANPDYMKQFRRGVLDRLIDQALLDSKARELGLRISDEQIKQ 120

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                 + A N   + + +   + + G+    F+  L    +   ++             
Sbjct: 121 AIVAMPEFAENGKFNNDRYLQLIRRAGMTPEMFRDSLRQDMVRQQLMSALLGTEFSLKGE 180

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNIT-------------- 174
                                 ++M      + E+    +                    
Sbjct: 181 AEQLDKLYNQTRDLRLVRLAAANYMADVQVSDNELEQYYKTNGARFMNDEQVKVDYLLLD 240

Query: 175 ---------------VREYLIRTVLFSIPDNKLQNQGFV------QKRIKDAEESRLRLP 213
                             Y     LF   + +      +      +   + AE    +  
Sbjct: 241 AANLAKDIKVTEQDAQDYYDQHQDLFQRAERRHVAHILIPFGKDEKAAEQKAEAVLAKAK 300

Query: 214 KDCNKL----EKFASKIHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGV 267
              +         +        G+  +  +  + P F+          + +    +  G 
Sbjct: 301 AGDDFAALAKADSSDTFSAKKGGELDWFEKGVMDPAFEKAAFALNKAGDLSTVVKSPFGF 360

Query: 268 EYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             I +             +K     +    K ++      +K+  ++ 
Sbjct: 361 HIIKLLGVEAAQTKPFADVKEETITRLQADKAKEKFFAEQQKMADSSF 408



 Score = 37.7 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 1/82 (1%)

Query: 237 LLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIA-LKAYLSAQNTPT 295
           L ++ +   F          +        G   +   DK ++    + + A L AQ    
Sbjct: 548 LDQNLIAQAFTLPHPIDGKPSVALVAETNGDRVVVALDKVNVPAAASGMAAMLQAQLGQG 607

Query: 296 KIEKHEAEYVKKLRSNAIIHYY 317
           K +      + +LR  A I Y+
Sbjct: 608 KAQVDYKSLIDELRKAAKIEYF 629


>gi|324114668|gb|EGC08636.1| ppic-type ppiase domain-containing protein [Escherichia fergusonii
           B253]
          Length = 622

 Score = 93.6 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/395 (9%), Positives = 103/395 (26%), Gaps = 85/395 (21%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
              + T+ +  +  +    +++ F +  +  Y     ++     +NG+ I+ G       
Sbjct: 1   MDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNGQEISRGQFENAFN 59

Query: 62  LLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
             + +                     L +  +  LI E L  Q      +      V   
Sbjct: 60  SERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYSRDLKLGISDEQVKQA 119

Query: 106 FVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV-------------- 148
                            +++ L++ G+  + + Q L  Q     ++              
Sbjct: 120 IFATPAFQVDGKFDNSRYNAILNQMGMSADQYAQALRNQLTTQQLINGIAGTDFMLKGET 179

Query: 149 --------KNDFMLKYGN-----------LEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                   +   + +               + EI +   + KN  V     R     +  
Sbjct: 180 DELAALVSQQRVVREATIDVNAKAEKQQVSDAEITSYYDQHKNNFVTPEQFRVSYIMLDA 239

Query: 190 NKLQNQGFVQKRIKDAEESRLRL-----------------------------PKDCNKLE 220
             +Q            ++ + +                                     +
Sbjct: 240 ANIQQPVSDADIQAYYDQHQDQFTQPQRVRYSIIQTKTENEAKAVLDALNNGGDFAELAK 299

Query: 221 KFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
           + ++  I   + G   +L +S    + ++   K +   +    +  G   + + D +   
Sbjct: 300 EKSADIISARNGGDLGWLEDSTTPQELKDAGLKDKGQLSGVIKSSVGFLVVRLDDVQPAK 359

Query: 280 GEI--ALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
            +    ++  ++A+    K         +K+   A
Sbjct: 360 VKTLAEVRDDIAAKVKHEKALDAYYALQQKVSDAA 394


>gi|78185901|ref|YP_373944.1| peptidyl-prolyl cis-trans isomerase SurA [Chlorobium luteolum DSM
           273]
 gi|78165803|gb|ABB22901.1| peptidyl-prolyl cis-trans isomerase SurA [Chlorobium luteolum DSM
           273]
          Length = 439

 Score = 93.6 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/310 (11%), Positives = 97/310 (31%), Gaps = 14/310 (4%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI----N 69
           K L + F +I   ++   +  +  ++ ++   +  EVI   ++  R  + ++Q       
Sbjct: 3   KALHSVFAVIAVLLIMPPTLSAAVVADKVVAVVGSEVIFKSELDSRELMTRMQYPGLKDE 62

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
             L    +  +I + +   + +   ++ D N V    V   R              + G 
Sbjct: 63  ASLRSTILDNIIDQKIILTKAKIDSVSIDENAVTSMAVDRFRQLSGRFTSKEDMERRLGR 122

Query: 130 GDNHFKQYLAIQSIWPDVVK---NDFMLKYGNLEMEIPANKQKM---KNITVREYLIRTV 183
             +  ++ LA +     +++               E+ +  +           E  +  +
Sbjct: 123 SVDAIRRDLADELRGQQMIETLKRKKFSSVTIGYGEVMSFYRSNQASMPNLPEEVSVSQI 182

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL 242
           L     N       ++K  +  ++             +++         G   ++   +L
Sbjct: 183 LKFPGVNSASKAEALKKIQEIQKKQGSGFLSFEELARRYSMDPGSAPLGGDLGFVQRGEL 242

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE 301
              F++        + +    T+ G   I    +   G  I ++  L A       +   
Sbjct: 243 VKPFEDAAYALKDGHVSGIVETRYGYHIIQRLGRE--GSSIHVRHILVAFERSGSDDGEA 300

Query: 302 AEYVKKLRSN 311
           A ++  +RS 
Sbjct: 301 AAFLDAIRSK 310


>gi|166030348|ref|ZP_02233177.1| hypothetical protein DORFOR_00009 [Dorea formicigenerans ATCC
           27755]
 gi|166029868|gb|EDR48625.1| hypothetical protein DORFOR_00009 [Dorea formicigenerans ATCC
           27755]
          Length = 260

 Score = 93.6 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/277 (10%), Positives = 67/277 (24%), Gaps = 38/277 (13%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS 99
            ++   + G  ITD ++   I  L  ++           +   +        K G     
Sbjct: 17  QKVLAVVGGHEITDKEVDAFIKSLPREQQAYASNPQFRAQCQEQLEALYSFAKYGEDLKL 76

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
           +    +                                         +            
Sbjct: 77  DETEEYKSVMENARKDILA---------------------------RLAMKQLFDSVKVT 109

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
           + E+    +  K+   +   +          +  NQ          E          +  
Sbjct: 110 DEEVKDYYEANKSQFKKGATVHAKHILTDSEEKCNQIL--------ESIVSGEKVFEDAA 161

Query: 220 EKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++F++       G      +  +  +F++        +   P  TQ G   I + +K+D 
Sbjct: 162 KEFSTCPSGQRGGDLGEFGKGQMVKEFEDAAFAAEIGHVVGPVKTQFGYHLIKVEEKKDA 221

Query: 279 --GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                  +K  + +Q    K     ++ V +L     
Sbjct: 222 AESSFDEVKEQIKSQLKQQKQGDAYSKKVAELTEKYK 258


>gi|251778310|ref|ZP_04821230.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243082625|gb|EES48515.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 343

 Score = 93.6 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/350 (7%), Positives = 85/350 (24%), Gaps = 51/350 (14%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
              +   +  +    +        ++     A+ + +  T+  E IT GD+ + +  +  
Sbjct: 1   MNKIKKIVASVVVATLAFSIVGCKMIEKTPEAIKNTVLATVGKEKITQGDLDRDLKSITE 60

Query: 66  QKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
                                EL+   +  ++ E +   +  +  +      +N    + 
Sbjct: 61  SLKQKYGENYESNADIKDQLKELKTQYLNAIVNEKVILAKSAELNLRPSDEELNKDVDEA 120

Query: 110 ARNTGLSAEDFSSFLDK--QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
                 + +    +     Q        +           V  D +      + +I    
Sbjct: 121 VSYYKTAYQTEEQYNTFLEQNGFTEDEFKEYQKNQAIVRYVYQDMVKDVEVNDEDIQKYY 180

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI- 226
            + K+                     +     ++  + +             ++ +    
Sbjct: 181 DENKDTQ------------FSTPGEIDFDKSLQQANEIKSQLDGGADFAEVAKEKSQDPG 228

Query: 227 HDVSIGKAQYLLESD---LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE-- 281
              + G   ++  S    +           +   + P  +Q G   I +   +D G +  
Sbjct: 229 TKGNGGSLGFIEYSSTKYVKEFMDGFKDLKEGEISQPIKSQFGYHIIKVTGVKDEGADVA 288

Query: 282 ---------------IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                            +K  +  Q    K        +++ +    +  
Sbjct: 289 HILVADKGEGTVTPLEDVKEDIRGQLLQKKQSDVFNGKIEEWKKEVGVKI 338


>gi|218710170|ref|YP_002417791.1| peptidyl-prolyl cis-trans isomerase D [Vibrio splendidus LGP32]
 gi|218323189|emb|CAV19366.1| Peptidyl-prolyl cis-trans isomerase D [Vibrio splendidus LGP32]
          Length = 621

 Score = 93.6 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/403 (9%), Positives = 98/403 (24%), Gaps = 91/403 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + SY      +     +    I  G+  +  
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYI-TGGGNNAAAKVGNTEIARGEFEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +  +                    K  +  +I + L +Q+ E  G+    + +  
Sbjct: 60  QNERNRMQSQLGDYFAQMLADPAYVESFRKSVLDRMINDVLLEQQAESLGLRISDSQIRT 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
             ++  +         E + S L + G     F +Y+    +   +V             
Sbjct: 120 MILEMPQFQTAGQFDQEVYQSALRRAGFSAESFAEYMRRDLMRNQLVTALQGSEFVLQGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                 D        + +I    Q+      R    +     + 
Sbjct: 180 IDIQSKLIAQTRDIRTVTLSVADLAKTIELTDEQIEQYYQENPAAYTRPEQAKVSYIELS 239

Query: 189 DNKLQNQGFV---------------------------------QKRIKDAEESRLRLPKD 215
              L++Q  V                                 + + +   +        
Sbjct: 240 AEALKSQLEVSDEEAQKYYQEHLDKYSTEEQRKVSHILVQGDDEAKAQSILDELNAGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               E+ +         G   ++    + P F+      ++  +TT    +  G   I +
Sbjct: 300 ATLAEEKSDDFGSADVGGDLGWIERDVMDPAFEEAAFALENIGDTTGLVKSDFGYHIIKL 359

Query: 273 CDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            + +         +   +  +           E   +L   A 
Sbjct: 360 DEVKASQAQPYTEVATDIKQELLDQHAVDQFYEQQTELEKVAF 402


>gi|167766953|ref|ZP_02439006.1| hypothetical protein CLOSS21_01470 [Clostridium sp. SS2/1]
 gi|167710928|gb|EDS21507.1| hypothetical protein CLOSS21_01470 [Clostridium sp. SS2/1]
          Length = 247

 Score = 93.6 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/276 (10%), Positives = 68/276 (24%), Gaps = 38/276 (13%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFD 98
           +  I   + GE IT  D+   IA L  ++      +    + + + +      K G    
Sbjct: 3   NQNILAVVAGEEITQKDLDALIAALPKEQQAYAGNEHFRNQCLEQIITVHLFAKLGEELK 62

Query: 99  SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGN 158
                 F    A                                    + +    +    
Sbjct: 63  LEETEAFADNLAH-------------------------AKREILAQMALGEAMKDITVSE 97

Query: 159 LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
            E +      + + +       + +L               K  +  E+         + 
Sbjct: 98  EEAKEYYKANENQFMAGETVHAKHILV----------DDEDKCQEILEKIIGEETTFEDA 147

Query: 219 LEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR- 276
            ++F++       G         +  +F++        +   P  TQ G   I + DK+ 
Sbjct: 148 AKEFSTCPSKEKGGDLGAFGRGQMVKEFEDAAFAAEVGHVVGPVKTQFGYHLIKVEDKKD 207

Query: 277 -DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            +      +   +       K        + +L+  
Sbjct: 208 AETSVYEDVADTIKNIILQQKRNDVYGNKIAELKEK 243


>gi|33594430|ref|NP_882074.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella pertussis
           Tohama I]
 gi|33597875|ref|NP_885518.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella
           parapertussis 12822]
 gi|81713668|sp|Q7W5E0|PLP1_BORPA RecName: Full=Probable parvulin-type peptidyl-prolyl cis-trans
           isomerase; Short=PPIase; AltName: Full=Rotamase; Flags:
           Precursor
 gi|167016622|sp|P40415|PLP1_BORPE RecName: Full=Probable parvulin-type peptidyl-prolyl cis-trans
           isomerase; Short=PPIase; AltName: Full=Protein p13;
           AltName: Full=Rotamase; Flags: Precursor
 gi|33564505|emb|CAE43820.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella pertussis
           Tohama I]
 gi|33574304|emb|CAE38637.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella
           parapertussis]
 gi|332383841|gb|AEE68688.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella pertussis
           CS]
          Length = 258

 Score = 93.6 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 51/305 (16%), Positives = 99/305 (32%), Gaps = 52/305 (17%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ--KINGELE 73
           +    +L   C++ + ++           T+NG+ IT   + + + L+  Q    + +L 
Sbjct: 1   MKRIAMLAAACVIAVPAFAQN------VATVNGKPITQKSLDEFVKLVVSQGATDSPQLR 54

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           +   QE+I   +  Q  EK G+   ++                                 
Sbjct: 55  EQIKQEMINRQVFVQAAEKDGVAKQADVQTEI---------------------------- 86

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
               LA Q I    +  D++ K+   + ++ A  +K+K     +   +     + D K  
Sbjct: 87  ---ELARQGILVRALMADYLQKHPVTDAQVKAEYEKIKKEQAGKMEYKVRHILVEDEKTA 143

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK 252
           N    Q +            K  +  +K +         G   +   ++    F   + K
Sbjct: 144 NDLLAQVKSNK--------NKFDDLAKKNSKDPGSAERGGDLGWAPATNYVQPFAEAVTK 195

Query: 253 SQNN--TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
            +       P  TQ G   I + D R +  E      +  Q      ++  A Y K+LR 
Sbjct: 196 LKKGQLVDKPVQTQFGWHVIQVDDTRPV--EFPAMDQVRPQLEEMLRQQTLANYQKQLRE 253

Query: 311 NAIIH 315
            A I 
Sbjct: 254 QAKIQ 258


>gi|42521668|ref|NP_967048.1| hypothetical protein Bd0019 [Bdellovibrio bacteriovorus HD100]
 gi|39574198|emb|CAE77702.1| ppiD [Bdellovibrio bacteriovorus HD100]
          Length = 269

 Score = 93.6 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 95/296 (32%), Gaps = 38/296 (12%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELI 81
           L+I  ++ I +      S+ +   +  + IT  D +K+   +K Q IN   ++  +++L+
Sbjct: 3   LVISILLLISATAFAQKSTDVVAQVGKKTITLEDFNKKYNEVKSQTINPPTKEQFLEDLV 62

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
              +  QE EK  +  D                                     Q    Q
Sbjct: 63  RYEMGVQEAEKRNLQKDP----------------------------------IVQDRFNQ 88

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
            ++  +++ D   +   +++     K               + F       Q     ++ 
Sbjct: 89  EMYKALLEKDIGQRVQKIQVSDAEMKAWYAKNPELRTSHILIEFKAGATPAQVAEAKKRA 148

Query: 202 IKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQ-FQNLLKKSQNNTTN 259
            +  EE +         ++ ++         G   +     L P  ++ ++       T 
Sbjct: 149 TEIYEEVKKSKRPFEELVKLYSDDALSKQVGGDIGWQSRVTLVPNYYEAVVNMKVGEITG 208

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
              TQ G   I +  +R    E A K  + A     K ++   +Y ++++ +  I 
Sbjct: 209 LIETQFGFHVIKLTGRR--SFENANKRQIRAAVFDEKRKQVFNDYFERMKKSYPIK 262


>gi|327484462|gb|AEA78869.1| Peptidyl-prolyl cis-trans isomerase ppiD [Vibrio cholerae
           LMA3894-4]
          Length = 616

 Score = 93.6 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/403 (7%), Positives = 90/403 (22%), Gaps = 94/403 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + +Y     ++          I+ GD  +  
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLISGGNNAAA----NAEISRGDFEQAY 56

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                       K  +  ++ + L +Q     G+      V  
Sbjct: 57  QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 116

Query: 105 ---FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                 Q        +  + + L + G     + +YL    +   ++             
Sbjct: 117 LILEIPQFQSQGVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLAGE 176

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL---- 184
                                 DF  K    + EI    +       R   ++       
Sbjct: 177 VNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVELS 236

Query: 185 ---------------FSIPDNKLQNQGFVQKRIKDAE--------------ESRLRLPKD 215
                                 L      ++R                   +        
Sbjct: 237 ADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGADF 296

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               ++ +  +      G   ++    + P F+        +   +    +  G   I +
Sbjct: 297 ATLAKEKSQDLGSAAEGGSLGWIEPDTMDPAFEAAAFALTEKGQVSGLVKSDFGYHIIRL 356

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            D +   +     ++  +  +    +          +L   A 
Sbjct: 357 DDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAF 399


>gi|117618139|ref|YP_856546.1| peptidylprolyl cis-trans isomerase D [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559546|gb|ABK36494.1| peptidylprolyl cis-trans isomerase D [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 636

 Score = 93.6 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/408 (7%), Positives = 103/408 (25%), Gaps = 96/408 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+       +  +    +++ F +  + SY +   +     T+NG  I+   +    
Sbjct: 1   MLDKLREGAQGKVAKVILGLIILSFALAGVGSYLN-GPARTAPATVNGNDISSAALENAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +  +                 +  +  +  LI + L   +  + G+      +  
Sbjct: 60  RNERARMESQMGESFSQLAANPDYMKQFRRGVLDRLIDQALFDSKARELGLRVSDEQIKQ 119

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
                 + A +   + + +   + + G+    F+  L    +   ++             
Sbjct: 120 AIVAMPEFAEDGKFNNDRYLQLIRRAGMTPEMFRDSLRQDMVRQQLMGALLGTEFALKGE 179

Query: 152 -----------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRT------ 182
                                  ++      + E+    +   +  + +  ++       
Sbjct: 180 AEQLDKLYNQTRDLRLVRLAASAYLGDVKVSDEEVEQYYKANSSHFMNDEQVKVDYLLLD 239

Query: 183 --------------------------------VLFSIPDNKLQNQGFVQKRIKDAEESRL 210
                                            +  I     +++   +++ +       
Sbjct: 240 AATLGKDVKVSEQDAQDYYDQHQDLFQRAERRHVAHILIPFGKDEKAAEQKAEAVLTKAK 299

Query: 211 RLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGV 267
                    +  +S        G+  +  +  + P F+          + +    +  G 
Sbjct: 300 AGDDFAALAKADSSDTFSAKKGGELDWFEKGVMDPAFEKAAFALAKAGDLSTVVKSPFGF 359

Query: 268 EYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             I +             +KA   ++    K ++      +K+  ++ 
Sbjct: 360 HVIKLLGVEPAQTKPFADVKAETISRLQADKAKELFFAEQQKMADSSF 407



 Score = 40.0 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 1/82 (1%)

Query: 237 LLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA-QNTPT 295
           L ++ +   F+         +        G   +   DK  +  E +  A L   Q    
Sbjct: 547 LDQNLVAQAFRMPHPIDGKPSVELVTEANGDRVVVALDKVTVAKEPSGMAKLLQGQLGQG 606

Query: 296 KIEKHEAEYVKKLRSNAIIHYY 317
           K +      + +LR +A I Y+
Sbjct: 607 KAQVSYKSLIDELRKSAKIEYF 628


>gi|260776378|ref|ZP_05885273.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260607601|gb|EEX33866.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 619

 Score = 93.6 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/406 (9%), Positives = 96/406 (23%), Gaps = 92/406 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + SY     ++     +    I  G+  +  
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVGGSNNS-AAKVGNVEIGRGEFEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                       K  +  +I + L +Q  E  G+    + V  
Sbjct: 60  QNERNRMQAQLGDYFSTLLADPNYVESFRKSVLDRMINDLLLEQHAESLGLRVSDSQVRS 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQG---IGDNHFKQYLAIQSIWPDVVKN----------- 150
             V   +       D   +           + F +YL    +   ++             
Sbjct: 120 MIVDMPQFQVDGKFDQEIYQASLRRAGFSPDSFAEYLRRDLVRNQLLTAIQASDFSLEGE 179

Query: 151 ----------------------DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL---- 184
                                 DF  K    E EI     +      R   ++       
Sbjct: 180 VEAQSKLLTQTREIKKVTLSLSDFASKAELSEQEINDYYTQNPERYTRPEQVKVAYVELS 239

Query: 185 -FSIPDNKLQNQGFVQKRIKDAEES----------------------------RLRLPKD 215
              + D    +    ++  ++  +                                    
Sbjct: 240 AQQLKDAIDVSDEQAKQYYQEHLDKYSSEEQRRVSHILIEGDDEAKAQAILDELNAGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               E+ +         G   ++    + P F+      K   + T    +  G   I +
Sbjct: 300 ATLAEEKSDDFGSASEGGSLGWIERDVMDPAFEEAAFALKKAGDVTGLVKSDFGYHIIKL 359

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + +D        + + +  +    +      E   +L + A   Y
Sbjct: 360 DELKDSVAKPYEEVASEIKQELKDQQAIDQFYELQSQLETVAF-EY 404


>gi|326560318|gb|EGE10706.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis
           7169]
 gi|326566363|gb|EGE16513.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis
           BC1]
          Length = 434

 Score = 93.6 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 114/318 (35%), Gaps = 20/318 (6%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMS--SRIRTTINGEVITDGDISK-------RIALLK 64
           K +       +     +VS  S + +    I   +N E+I   ++++        I    
Sbjct: 4   KFIIKTLTAAVISCTSLVSQASISGNSHDGIVAVVNDEIILKSELNQATELVATEIQKNG 63

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS--AEDFSS 122
                 + + +A+ ELI E L+   I ++G+  +   ++   +Q A++ G++  +E  S 
Sbjct: 64  GNVTQDQAQTLALDELINEKLQLAIINRAGVVPNDEVIDQQLLQIAQSQGVNSLSEFQSK 123

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
              ++       +  L   +    + +N    +    + +I A     ++  + +   R 
Sbjct: 124 LDAERAGSYVALRANLIQDAAIQALWQNQIQSRVRITDDQIDAFLSSPESARLNQVQYRL 183

Query: 183 VLFSIPDNKLQNQG---FVQKRIKDAEESRLRLPKDCNKLEKFASKI--HDVSIGKAQYL 237
           +   +P                + +  +S L    + ++  + A      D+       +
Sbjct: 184 LHIRVPYLDNTASEQNRQQAALVAERVKSSLDAGMNLDQAMQNARGDYTPDLQGADTGLI 243

Query: 238 LESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK---AYLSAQNT 293
             + L P     + K +   T+ P VT  G++ + + +K+     I  K   +++ A+  
Sbjct: 244 NATALPPAIAAKVDKLTIGQTSTPIVTVNGIDIVKVVNKQQQNQVIVPKWQTSHILARID 303

Query: 294 PTKIEKHEAEYVKKLRSN 311
             +      + +  +   
Sbjct: 304 SNQSSDIAEQKINAIYQQ 321



 Score = 90.5 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 60/165 (36%), Gaps = 3/165 (1%)

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
                ++I     K +   V     +T       +  Q+    +++I    +   +    
Sbjct: 269 VTVNGIDIVKVVNKQQQNQVIVPKWQTSHILARIDSNQSSDIAEQKINAIYQQLQQGADF 328

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAIC 273
                 ++         G   ++ E D+ P+F+ ++K + + + + P+ +Q G   + + 
Sbjct: 329 GTLAATYSDDTGSASQHGSLGWVNEGDMVPEFETMMKNTAKGDFSTPFRSQFGWHILKVN 388

Query: 274 DKRDLGGEIA-LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           D +         +             + + +++++LRS+A I  Y
Sbjct: 389 DIKQHDITEQYRRNAAHEYLFLRSAPQAQEDWLQELRSSAYIKIY 433


>gi|326575894|gb|EGE25817.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis
           CO72]
          Length = 434

 Score = 93.6 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 114/318 (35%), Gaps = 20/318 (6%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMS--SRIRTTINGEVITDGDISK-------RIALLK 64
           K +       +     +VS  S + +    I   +N E+I   ++++        I    
Sbjct: 4   KFIIKTLTAAVISCTSLVSQASISGNSHDGIVAVVNDEIILKSELNQATELVATEIQKNG 63

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS--AEDFSS 122
                 + + +A+ ELI E L+   I ++G+  +   ++   +Q A++ G++  +E  S 
Sbjct: 64  GNVTQDQAQTLALDELINEKLQLAIINRAGVVPNDEVIDQQLLQIAQSQGVNSLSEFQSK 123

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
              ++       +  L   +    + +N    +    + +I A     ++  + +   R 
Sbjct: 124 LDAERAGSYAALRANLIQDAAIQALWQNQIQSRVRITDDQIDAFLSSPESARLNQVQYRL 183

Query: 183 VLFSIPDNKLQNQG---FVQKRIKDAEESRLRLPKDCNKLEKFASKI--HDVSIGKAQYL 237
           +   +P                + +  +S L    + ++  + A      D+       +
Sbjct: 184 LHIRVPYLDNTASEQNRQQAALVAERVKSSLDAGMNLDQAMQNARGDYTPDLQGADTGLI 243

Query: 238 LESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK---AYLSAQNT 293
             + L P     + K +   T+ P VT  G++ + + +K+     I  K   +++ A+  
Sbjct: 244 NATALPPAIAAKVDKLTIGQTSTPIVTVNGIDIVKVVNKQQQNQVIVPKWQTSHILARID 303

Query: 294 PTKIEKHEAEYVKKLRSN 311
             +      + +  +   
Sbjct: 304 SNQSSDIAEQKINAIYQQ 321



 Score = 90.5 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 60/165 (36%), Gaps = 3/165 (1%)

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
                ++I     K +   V     +T       +  Q+    +++I    +   +    
Sbjct: 269 VTVNGIDIVKVVNKQQQNQVIVPKWQTSHILARIDSNQSSDIAEQKINAIYQQLQQGADF 328

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAIC 273
                 ++         G   ++ E D+ P+F+ ++K + + + + P+ +Q G   + + 
Sbjct: 329 GTLAATYSDDTGSASQHGSLGWVNEGDMVPEFETMMKNTAKGDFSTPFRSQFGWHILKVN 388

Query: 274 DKRDLGGEIA-LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           D +         +             + + +++++LRS+A I  Y
Sbjct: 389 DIKQHDITEQYRRNAAHEYLFLRSAPQAQEDWLQELRSSAYIKIY 433


>gi|224825282|ref|ZP_03698387.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
           2002]
 gi|224602203|gb|EEG08381.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
           2002]
          Length = 264

 Score = 93.6 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 77/302 (25%), Gaps = 51/302 (16%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-----ELEKIA 76
           L     V  +     A +     T+NG  I   D+ + + +L             L +  
Sbjct: 6   LAALLFVAAIGIPGLAAAQA-VATVNGVAIDKKDVDEAVTMLSKNSNGKVQDSPALREQI 64

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
            + LI + L  QE  + G+    + V                                 Q
Sbjct: 65  KENLINKQLILQEATRRGLEKQPDFV------------------------------ERLQ 94

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
            +  + +   +                    Q        + +    +            
Sbjct: 95  NVREEMLRDALFAEIVKQSPVTDAKIKARYDQLASQQAGSKEVHARQIMV---------- 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHD-VSIGKAQYLLESDLHPQFQNLLKKSQN 255
             +           +  K  +  +  +       S G   +   S + P+    LK    
Sbjct: 145 ASEAEASKVIADLKKGKKFEDLAKTLSKDPAAKQSGGDMGWGNLSQMEPKLAEALKGLGK 204

Query: 256 NTT--NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             +   P+ +  G     I D RD          + AQ      ++  A+ V +LRS A 
Sbjct: 205 GQSSSQPFKSGLGWHVFKIEDIRDAKL--PPLNEVKAQIARQIQQEDVAKAVGELRSKAK 262

Query: 314 IH 315
           I 
Sbjct: 263 IQ 264


>gi|237730418|ref|ZP_04560899.1| peptidyl-prolyl cis-trans isomerase [Citrobacter sp. 30_2]
 gi|226905957|gb|EEH91875.1| peptidyl-prolyl cis-trans isomerase [Citrobacter sp. 30_2]
          Length = 624

 Score = 93.2 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/396 (9%), Positives = 102/396 (25%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +NG+ I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNF-AAKVNGQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  L+ E L  Q   +  +    + V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLVDEALLDQYSRELKLNISDDQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQS------------------- 142
                             +++ +++ G+  + + Q L  Q                    
Sbjct: 120 AIFATPAFQVDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 143 --------IWPDVVKND------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                       +V+           K    E E+ +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRIVREATIDVNALAAKQSVTEQEVASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AAAMQETASDADIQSYYDQHQDQFTQPQRNRYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++ I      G   +L +S    + +N   K +   +    +  G     + D +  
Sbjct: 300 KEKSADIISARKGGDMGWLEDSTTPDELKNAGLKEKGQLSGVIKSSVGFLVARLDDVQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +     +  ++A+    K         +K+   A
Sbjct: 360 QVKPLSEARDEIAAKVKQEKALDAYYALQQKVSDAA 395


>gi|298529972|ref|ZP_07017374.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509346|gb|EFI33250.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 628

 Score = 93.2 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/402 (8%), Positives = 92/402 (22%), Gaps = 97/402 (24%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I  +    ++I+F    + S+            INGE I+  + ++  
Sbjct: 1   MLDIMRRNAQSWIVKVLFGVIVIVFVFWGVGSFTEDDRE--TLAVINGEPISIQEFARAY 58

Query: 61  ALLKLQKINGE------------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
                                  L +    +++   L  Q+  + G++     +      
Sbjct: 59  ESTAHSMREQNPGLSREDMRSMQLREQVFNQMVNSKLLVQKASQLGLSVSREQLQQEITS 118

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN------------------ 150
                           ++                    +++                   
Sbjct: 119 LPAFFDEENRFDPQRYEQVLRSHRLTPSQFERDFRHNLLMEKMEEYVSLPAKPNEHEVQE 178

Query: 151 -------------------DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL------- 184
                              +F  K    E +I    Q  ++  +    IR          
Sbjct: 179 FFNYVRSQAKIDYKLFEADEFHDKVSITEEQIKEYYQDNQDRFMEPEKIRIAHLELSPDA 238

Query: 185 ---------------FSIPDNKLQNQGFVQKRI-----------------KDAEESRLRL 212
                          F    ++ +    V+ R                  ++  E  L  
Sbjct: 239 LAGAQRVSSEEVEAYFQSHQSEFEQPEEVKARHILVEVEEDAPELEQEQARERIEQILAE 298

Query: 213 PKDCNKLEKFASKIHDV----SIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGV 267
            +     E+ A +          G        ++   F+      +    ++P  T+ G 
Sbjct: 299 LEMGQSFEELAREHSQCPSAAEGGDLGRFGRGEMVEPFEEAAFDLTPGEVSSPVQTRFGW 358

Query: 268 EYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
             I + +  +        ++  +  +    K      +Y   
Sbjct: 359 HLIKVEEYVEAASPDLEEVEDEIRRKIGREKAADQIGDYADD 400


>gi|94310806|ref|YP_584016.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cupriavidus
           metallidurans CH34]
 gi|93354658|gb|ABF08747.1| Peptidyl-prolyl cis-trans isomerase [Cupriavidus metallidurans
           CH34]
          Length = 264

 Score = 93.2 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 50/309 (16%), Positives = 91/309 (29%), Gaps = 53/309 (17%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           + T+     +  ++   S  ++A +      +NG+ I+   + K IA    Q    EL  
Sbjct: 1   MKTSVLSFSLAAVLAAGSLPAFAQN---AAVVNGKPISSAKVDKLIASTG-QPETPELRD 56

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
            A   LI   L  QE  K GI                               Q       
Sbjct: 57  RARNMLIDRELLLQEANKRGI------------------------------TQRDDVQEQ 86

Query: 135 KQYLAIQSIWPDVVKNDFMLK-YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
            +   +  +   V ++        + E+     K K +    +EY +R +L     +   
Sbjct: 87  LEQARLNVLAGAVFEDYVRTHGASDEELRKQYEKIKAQFGNGKEYHVRHILVEKEADAKA 146

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLK 251
               ++              K  +  +  +       + G   +   S   P+F   +  
Sbjct: 147 LIAKIKA-----------GAKFEDVAKAQSKDTGSAANGGDLDWANSSSYVPEFSAAMTN 195

Query: 252 KSQNNTTN-PYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTK--IEKHEAEYVK 306
             +   T+ P  TQ G   I + D RD        +K  L       +    +     +K
Sbjct: 196 LKKGQMTDTPVKTQFGWHIIELVDTRDAKIPSFEEVKPQLQQMMMGDQGWQREQFQAMMK 255

Query: 307 KLRSNAIIH 315
            L+  A I 
Sbjct: 256 SLKDKAKIQ 264


>gi|301165393|emb|CBW24964.1| putative peptidyl-prolyl cis-trans isomerase [Bacteriovorax marinus
           SJ]
          Length = 271

 Score = 93.2 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 78/296 (26%), Gaps = 38/296 (12%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA-LLKLQKINGELEKIAVQELI 81
           +    V ++S  S A    +  T++G  I   ++ K     L          +  + ++I
Sbjct: 6   LAITSVLLLSTTSMAAKDPVVATVDGISIKKSELEKTYQENLMFVSDKRVTRQKVLNDII 65

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
              L  +  +K+ +  D                    +                      
Sbjct: 66  NRKLGIKRAKKANLDNDPIVKQKMEDIMYHAQISKDLEPR-------------------- 105

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
                      + K    + ++    +          L R         K +N+  + + 
Sbjct: 106 -----------LKKIVVTDADVDKYYKDHPEYRTAHILFRVR---TNPEKEENEAALNQA 151

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNP 260
           +K     + +         KF+      + G   +     L    F  +  K+ N  T P
Sbjct: 152 LKVYNTLKKKPELFSELANKFSQSSTAPNGGDMGFQPAIRLAPEYFNAIKGKADNFITPP 211

Query: 261 YVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             TQ G   I +   + +                 K +     Y  +LR+ A I  
Sbjct: 212 VKTQFGYHIIKVMAVKSVKSINNAL--YKKIVYDQKRDAILDNYFSELRAKANIKI 265


>gi|158319280|ref|YP_001511787.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus
           oremlandii OhILAs]
 gi|158139479|gb|ABW17791.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus
           oremlandii OhILAs]
          Length = 249

 Score = 93.2 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 84/285 (29%), Gaps = 47/285 (16%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQK----INGELEKIAVQELIVETLKKQEIEKSG 94
           ++++  T+ G  IT  D    +  L  Q+     +   +K  VQEL+ + L   E  K+G
Sbjct: 3   NNKVLATVGGREITQQDFDLLLGSLNPQQAMQFNSEAGKKQLVQELVNQELFLLEALKNG 62

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
           +  D   +                                       +I      ++ + 
Sbjct: 63  LDKDEVFIQEA-------------------------------QRMHDNILKQYAMHNVLK 91

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
                E ++     +  +       ++                 +++  +  +       
Sbjct: 92  NATVSEEDMLNYYNEHTDSFKEPESMQASHIL---------VESEEKANEVLKEINEGLS 142

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAIC 273
                +K ++   +   G   +     + P+F+N          + P  TQ G   I   
Sbjct: 143 FEEAAKKHSTCPSNAQGGDLGHFTRGRMVPEFENAAFDMEVGAVSAPVKTQFGYHIIKAV 202

Query: 274 DK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +K    +     +K  L+ Q +  K ++     V +L+    +  
Sbjct: 203 NKVEESVKPFAEVKMQLNQQLSMMKQQELYLNKVDELKKEYEVQI 247


>gi|154502709|ref|ZP_02039769.1| hypothetical protein RUMGNA_00522 [Ruminococcus gnavus ATCC 29149]
 gi|153796592|gb|EDN79012.1| hypothetical protein RUMGNA_00522 [Ruminococcus gnavus ATCC 29149]
          Length = 246

 Score = 93.2 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 75/277 (27%), Gaps = 38/277 (13%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
           M  +I   + G  I + D  K +  +  ++          Q+ + + +      + G   
Sbjct: 1   MEQKIIAVVAGREIKESDFEKFLQNVPREQQAYLSNPQFRQQCLDQFVALHMFAELGGEM 60

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                  +                                 A + I   +   + M    
Sbjct: 61  KLEETEEY---------------------------QEMVENAKRDILAQMTMREVMKDAV 93

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E ++    ++ K    +   +R         +  +      +  +            +
Sbjct: 94  VTEEDVKNYYEEHKQQFTKGETVRAKHILTDSKEKCDAILAAIQSGE--------TSFED 145

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR 276
             ++ ++       G      +  +  +F++            P  TQ G   I + +K+
Sbjct: 146 AAKEKSTCPSGAKGGDLGEFGKGQMVKEFEDAAFTAEIGAIVGPVQTQFGYHLIKVEEKK 205

Query: 277 DLGG--EIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           D        +K  +  Q    +  K  ++ VK+LR  
Sbjct: 206 DAAVADFEEVKNSIRNQLLQQRQNKVYSDKVKELREK 242


>gi|326570911|gb|EGE20935.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis
           BC7]
          Length = 434

 Score = 93.2 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 114/318 (35%), Gaps = 20/318 (6%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMS--SRIRTTINGEVITDGDISK-------RIALLK 64
           K +       +     +VS  S + +    I   +N E+I   ++++        I    
Sbjct: 4   KFIIKTLTAAVISCTSLVSQASISGNSHDGIVAVVNDEIILKSELNQATELVATEIQKNG 63

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS--AEDFSS 122
                 + + +A+ ELI E L+   I ++G+  +   ++   +Q A++ G++  +E  S 
Sbjct: 64  GNVTQDQAQTLALDELINEKLQLAIINRAGVIPNDEVIDQQLLQIAQSQGVNSLSEFQSK 123

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
              ++       +  L   +    + +N    +    + +I A     ++  + +   R 
Sbjct: 124 LDAERAGSYVALRANLIQDAAIQALWQNQIQSRVRITDDQIDAFLSSPESARLNQVQYRL 183

Query: 183 VLFSIPDNKLQNQG---FVQKRIKDAEESRLRLPKDCNKLEKFASKI--HDVSIGKAQYL 237
           +   +P                + +  +S L    + ++  + A      D+       +
Sbjct: 184 LHIRVPYLDNTASEQNRQQAALVAERVKSSLDAGMNLDQAMQNARGDYTPDLQGADTGLI 243

Query: 238 LESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK---AYLSAQNT 293
             + L P     + K +   T+ P VT  G++ + + +K+     I  K   +++ A+  
Sbjct: 244 NATALPPAIAAKVDKLTIGQTSTPIVTVNGIDIVKVVNKQQQNQVIVPKWQTSHILARID 303

Query: 294 PTKIEKHEAEYVKKLRSN 311
             +      + +  +   
Sbjct: 304 SNQSSDIAEQKINAIYQQ 321



 Score = 89.7 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 60/165 (36%), Gaps = 3/165 (1%)

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
                ++I     K +   V     +T       +  Q+    +++I    +   +    
Sbjct: 269 VTVNGIDIVKVVNKQQQNQVIVPKWQTSHILARIDSNQSSDIAEQKINAIYQQLQQGVDF 328

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAIC 273
                 ++         G   ++ E D+ P+F+ ++K + + + + P+ +Q G   + + 
Sbjct: 329 GTLAATYSDDTGSASQHGSLGWVNEGDMVPEFETMMKNTAKGDFSTPFRSQFGWHILKVN 388

Query: 274 DKRDLGGEIA-LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           D +         +             + + +++++LRS+A I  Y
Sbjct: 389 DIKQHDITEQYRRNAAHEYLFLRSAPQAQEDWLQELRSSAYIKIY 433


>gi|296113335|ref|YP_003627273.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis RH4]
 gi|295921029|gb|ADG61380.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis RH4]
 gi|326563565|gb|EGE13824.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis
           12P80B1]
 gi|326570173|gb|EGE20218.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis
           BC8]
          Length = 434

 Score = 93.2 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 114/318 (35%), Gaps = 20/318 (6%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMS--SRIRTTINGEVITDGDISK-------RIALLK 64
           K +       +     +VS  S + +    I   +N E+I   ++++        I    
Sbjct: 4   KFIIKTLTAAVISCTSLVSQASISGNSHDGIVAVVNDEIILKSELNQATELVATEIQKNG 63

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS--AEDFSS 122
                 + + +A+ ELI E L+   I ++G+  +   ++   +Q A++ G++  +E  S 
Sbjct: 64  GNVTQDQAQTLALDELINEKLQLAIINRAGVIPNDEVIDQQLLQIAQSQGVNSLSEFQSK 123

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
              ++       +  L   +    + +N    +    + +I A     ++  + +   R 
Sbjct: 124 LDAERAGSYVALRANLIQDAAIQALWQNQIQSRVRITDDQIDAFLSSPESARLNQVQYRL 183

Query: 183 VLFSIPDNKLQNQG---FVQKRIKDAEESRLRLPKDCNKLEKFASKI--HDVSIGKAQYL 237
           +   +P                + +  +S L    + ++  + A      D+       +
Sbjct: 184 LHIRVPYLDNTASEQNRQQAALVAERVKSSLDAGMNLDQAMQNARGDYTPDLQGADTGLI 243

Query: 238 LESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK---AYLSAQNT 293
             + L P     + K +   T+ P VT  G++ + + +K+     I  K   +++ A+  
Sbjct: 244 NATALPPAIAAKVDKLTIGQTSTPIVTVNGIDIVKVVNKQQQNQVIVPKWQTSHILARID 303

Query: 294 PTKIEKHEAEYVKKLRSN 311
             +      + +  +   
Sbjct: 304 SNQSSDIAEQKINAIYQQ 321



 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 60/165 (36%), Gaps = 3/165 (1%)

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
                ++I     K +   V     +T       +  Q+    +++I    +   +    
Sbjct: 269 VTVNGIDIVKVVNKQQQNQVIVPKWQTSHILARIDSNQSSDIAEQKINAIYQQLQQGADF 328

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAIC 273
                 ++         G   ++ E D+ P+F+ ++K + + + + P+ +Q G   + + 
Sbjct: 329 GTLAATYSDDTGSASQHGSLGWVNEGDMVPEFETMMKNTAKGDFSTPFRSQFGWHILKVN 388

Query: 274 DKRDLGGEIA-LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           D +         +             + + +++++LRS+A I  Y
Sbjct: 389 DIKQHDITEQYRRNAAHEYLFLRSAPQAQEDWLQELRSSAYIKIY 433


>gi|326562023|gb|EGE12353.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis
           103P14B1]
 gi|326574518|gb|EGE24460.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis
           101P30B1]
 gi|326576358|gb|EGE26267.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis
           O35E]
          Length = 434

 Score = 93.2 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 114/318 (35%), Gaps = 20/318 (6%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMS--SRIRTTINGEVITDGDISK-------RIALLK 64
           K +       +     +VS  S + +    I   +N E+I   ++++        I    
Sbjct: 4   KFIIKTLTAAVISCTSLVSQASISGNSHDGIVAVVNDEIILKSELNQATELVATEIQKNG 63

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS--AEDFSS 122
                 + + +A+ ELI E L+   I ++G+  +   ++   +Q A++ G++  +E  S 
Sbjct: 64  GNVTQDQAQTLALDELINEKLQLAIINRAGVIPNDEVIDQQLLQIAQSQGVNSLSEFQSK 123

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
              ++       +  L   +    + +N    +    + +I A     ++  + +   R 
Sbjct: 124 LDAERAGSYAALRANLIQDAAIQALWQNQIQSRVRITDDQIDAFLSSPESARLNQVQYRL 183

Query: 183 VLFSIPDNKLQNQG---FVQKRIKDAEESRLRLPKDCNKLEKFASKI--HDVSIGKAQYL 237
           +   +P                + +  +S L    + ++  + A      D+       +
Sbjct: 184 LHIRVPYLDNTASEQNRQQAALVAERVKSSLDAGMNLDQAMQNARGDYTPDLQGADTGLI 243

Query: 238 LESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK---AYLSAQNT 293
             + L P     + K +   T+ P VT  G++ + + +K+     I  K   +++ A+  
Sbjct: 244 NATALPPAIAAKVDKLTIGQTSTPIVTVNGIDIVKVVNKQQQNQVIVPKWQTSHILARID 303

Query: 294 PTKIEKHEAEYVKKLRSN 311
             +      + +  +   
Sbjct: 304 SNQSSDIAEQKINAIYQQ 321



 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 60/165 (36%), Gaps = 3/165 (1%)

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
                ++I     K +   V     +T       +  Q+    +++I    +   +    
Sbjct: 269 VTVNGIDIVKVVNKQQQNQVIVPKWQTSHILARIDSNQSSDIAEQKINAIYQQLQQGADF 328

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAIC 273
                 ++         G   ++ E D+ P+F+ ++K + + + + P+ +Q G   + + 
Sbjct: 329 GTLAATYSDDTGSASQHGSLGWVNEGDMVPEFETMMKNTAKGDFSTPFRSQFGWHILKVN 388

Query: 274 DKRDLGGEIA-LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           D +         +             + + +++++LRS+A I  Y
Sbjct: 389 DIKQHDITEQYRRNAAHEYLFLRSAPQAQEDWLQELRSSAYIKIY 433


>gi|302381139|ref|YP_003816962.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302191767|gb|ADK99338.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 317

 Score = 93.2 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/318 (10%), Positives = 86/318 (27%), Gaps = 51/318 (16%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +  S +  + +  +  + +  C       +      R    +  + I   D+ +      
Sbjct: 1   MRHSRNPLVLIAFSAVLALAACGRGGGDDQPPEPGDRAVARVQDQTIWASDVKREAVAQG 60

Query: 65  L------QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
           L        I   L +  + E++ + L  +E E+ G+                       
Sbjct: 61  LVGEGEPLDITSNLFRRVLDEVVDQKLLAREAERRGL----------------------- 97

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
                            +    + +   +V+N    +  +  ++    +Q     T  E 
Sbjct: 98  -------DNSALAQRRLEATRERILGDMLVENVVNGRINDQAVQTLYQEQLRLARTSEEI 150

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYL 237
            +R +L                          +        ++ +       S G   Y 
Sbjct: 151 RVRLILSRTKPEADA-----------VIGILGQGASFEAVAQERSIDEATRFSGGDLGYS 199

Query: 238 LESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK 296
               +   +   L+ +   +T  P+ T+ G   + + D+R              Q     
Sbjct: 200 TADVMPQAYAGALRDAPAGSTVGPFQTEGGWAVLRVEDRRRESP--PTLDQARPQIVRYL 257

Query: 297 IEKHEAEYVKKLRSNAII 314
             +   + +++LR  A +
Sbjct: 258 TYEGVRQLLEELRGKAKV 275


>gi|160947418|ref|ZP_02094585.1| hypothetical protein PEPMIC_01352 [Parvimonas micra ATCC 33270]
 gi|158446552|gb|EDP23547.1| hypothetical protein PEPMIC_01352 [Parvimonas micra ATCC 33270]
          Length = 247

 Score = 93.2 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 83/284 (29%), Gaps = 46/284 (16%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALL---KLQKINGELEKIAVQELIVETLKKQEIEKSG 94
           M S++   +NG  I + D+ + I L+    L   N E +K   +EL+ + L  Q+     
Sbjct: 1   MESKVMAIVNGVEILESDVDRFIELMGDRALPYKNPEGKKQLCEELVKQELIIQDCYNRK 60

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
           +      V                                   +    +    +   F  
Sbjct: 61  LNESEAFVKEI------------------------------NEITRSILAKHFLNELFGD 90

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
                + EI    ++ KN+    Y  +                 +++  + ++      +
Sbjct: 91  -IKVSDEEIKKYYEENKNLFKSRYTFKAKHIL---------VESEEKADELKKLCENGEE 140

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAIC 273
                +K++        G      +  +  +F+N  +       T P  TQ G   I + 
Sbjct: 141 FEELAKKYSMCPSKEVGGDLGEFSQGQMVLEFENACIDARVGEITKPVKTQFGYHLIMLE 200

Query: 274 DKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            K +        +K  +       K +    + +  L  +A I 
Sbjct: 201 SKTEPEQLDLETVKDEIRKNIVKAKEQIAYVKKMDALMKDAKIE 244


>gi|82703233|ref|YP_412799.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira
           multiformis ATCC 25196]
 gi|82411298|gb|ABB75407.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira
           multiformis ATCC 25196]
          Length = 265

 Score = 93.2 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 90/307 (29%), Gaps = 46/307 (14%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-- 70
           +  +    +  +     I +    A +      +NG  I    +   +     Q      
Sbjct: 1   MHFMKFTRLAALGISGLIAATTVQAQTGSTMAKVNGTPIPQSRLEFIMKARASQGQPDTP 60

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
           E  K   ++LI E +  QE +K G+  D + +                            
Sbjct: 61  EARKALREDLITEEVIAQEAKKKGLDRDPDFITQL------------------------- 95

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                  +A Q+      + D++  +   + E+    + +K     +      +    + 
Sbjct: 96  ------DMARQTAMVRAYQIDYIKNHPVSDEELHKEYETVKTQMGDKEYKAHHILVATEE 149

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNL 249
           + ++     K+    ++            EK          G+  +   +     F + L
Sbjct: 150 EAKDIIAKLKKGAKFDKL---------AGEKSLDTGSKSKGGELDWSPAASYVQPFAEAL 200

Query: 250 LKKSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
            K  +   T+ P  T  G   I + D R L   I     +        +++  A  +  L
Sbjct: 201 TKLHKGQLTDQPVKTPFGWHVIRLDDVRPLK--IPPFEEIKQNLAQRVLQRQFAASINDL 258

Query: 309 RSNAIIH 315
           RS A + 
Sbjct: 259 RSKAKVE 265


>gi|330991867|ref|ZP_08315816.1| Cell-binding factor 2 [Gluconacetobacter sp. SXCC-1]
 gi|329760888|gb|EGG77383.1| Cell-binding factor 2 [Gluconacetobacter sp. SXCC-1]
          Length = 305

 Score = 93.2 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/280 (9%), Positives = 76/280 (27%), Gaps = 50/280 (17%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKIN---GELEKIAVQELIVETLKKQEIEKSGI 95
            + +  ++NG+ I   D+ + +A +  Q        +  I + +L+ +   +    K+G+
Sbjct: 47  QNPVLASVNGQDIRLNDVRQAMASMPEQLRKLPDNIIVPILLNQLVDQRAIQIAAAKAGL 106

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
               +               +                               +       
Sbjct: 107 DKQPDVQQQMQQAAQNALQNA------------------------------YLSAQVAPT 136

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
             +  ++   ++         E   R +L              +    D  +        
Sbjct: 137 LTDEAVKTYYDQNYANKPGAEEVHARHIL-----------VKSEAEANDIIKQLKAGADF 185

Query: 216 CNKLEKFASKIH--DVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTN-PYVTQKGVEYIA 271
                K ++       + G   +  + D+    +        N+ +  P  TQ G   I 
Sbjct: 186 GQLATKLSTDPGSAKQNGGDLGWFKKGDMLPTFWDAASAMQPNSFSQTPVHTQYGWHVIQ 245

Query: 272 ICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
           +  KR        A++  +  +     ++K  +  + +++
Sbjct: 246 VLGKRTAPTPTLDAMRDQIRQKLIQEGVQKAVSNALSQVK 285


>gi|118595195|ref|ZP_01552542.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylophilales
           bacterium HTCC2181]
 gi|118440973|gb|EAV47600.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylophilales
           bacterium HTCC2181]
          Length = 428

 Score = 93.2 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/313 (12%), Positives = 101/313 (32%), Gaps = 19/313 (6%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL--- 65
           +   I  L    ++     +    Y  +    +I   +  +VIT  ++   I        
Sbjct: 1   MWSVINSLIFIVLIASHACLSWG-YDDYEPLDKIVAVVEKDVITKKEMEHGIESFNKGLR 59

Query: 66  ------QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                      E+ +I + ELI + +  Q  E+S I  D   ++      A N  ++ E 
Sbjct: 60  GSNPNNLPSEKEIREIVLDELIEKKIISQYAEQSQIIIDIQQIDNALKNIAANNNITLEQ 119

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
                 K+  G +   + +  Q     + +     +    + EI    +K +     +Y 
Sbjct: 120 LKE-SAKKSGGLDDLYEEVRFQLTLRIIKERAIFSQINISDYEIKKFIEKERLRNPDQYS 178

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
           I  +L               +++    ++R          ++ +   +    G   +   
Sbjct: 179 ISHILLKKNSGDENQLTLKLEKVLIELQNRP----FDEVAQELSDGPYAEKGGLMGWFEL 234

Query: 240 SDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA---YLSAQNTPT 295
           + L   F +++   S    + P+++  G   + + + +    +  + +    ++      
Sbjct: 235 NSLPNIFVEHVKGMSVREISKPFLSDNGYHILLVNEMQSKSTKEKIYSTQYNINQILLKK 294

Query: 296 KIEKHEAEYVKKL 308
                E + + KL
Sbjct: 295 NQVTAENDLISKL 307



 Score = 68.2 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 86/270 (31%), Gaps = 6/270 (2%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I+D +I K I   +L+  +       +  L   +  + ++            N  F + A
Sbjct: 157 ISDYEIKKFIEKERLRNPDQYSISHIL--LKKNSGDENQLTLKLEKVLIELQNRPFDEVA 214

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAI-QSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
           +            L      ++    ++   + +    +   F+   G   + +   + K
Sbjct: 215 QELSDGPYAEKGGLMGWFELNSLPNIFVEHVKGMSVREISKPFLSDNGYHILLVNEMQSK 274

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHD 228
                +           +  N++  +  +  ++ + +              +++      
Sbjct: 275 STKEKIYSTQYNINQILLKKNQVTAENDLISKLNNIKNQISDGLPFAEAASQYSEDLSSA 334

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNN-TTNPYVTQKGVEYIAICDKRDLGGEIALKA- 286
              G+  ++  ++L P+FQ  L  + NN    P+ T  G   I +  KRD       ++ 
Sbjct: 335 KKNGELGWVDRNNLLPEFQVELDNASNNSIVGPFKTAAGWHLIELIAKRDKDITEESQSL 394

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
               Q    K E    ++   L+  + I  
Sbjct: 395 SARLQLLNYKAEIRYKDWFHDLKQQSNIEI 424


>gi|209517045|ref|ZP_03265893.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           H160]
 gi|209502576|gb|EEA02584.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           H160]
          Length = 259

 Score = 93.2 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 81/278 (29%), Gaps = 48/278 (17%)

Query: 43  RTTINGEVITDGDISKRIALL--KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I        I  L  + Q+   +L++   +EL+   +  QE  + G+    +
Sbjct: 25  IAVVNGTPIPKSRADALIQQLVHQGQQDTPQLQQAVREELVNREILMQEALRRGLPNRPD 84

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q++    +  DF+      +
Sbjct: 85  VKAQV-------------------------------AVAQQTVVLRALIEDFVKNNQPTD 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            EI A    +      +      +    + + ++     K                +  +
Sbjct: 114 AEITARYNALVKDAGGQEYHLHHILVDNEQQAKDLIAKIKA----------GASFEDLAK 163

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAICDKRD 277
           +++       + G   +       P+F +      +   T+ P  TQ G   I + D R 
Sbjct: 164 QYSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKGQMTDTPVHTQFGWHIIRVDDIRA 223

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +         + AQ      ++    + + LR NA I 
Sbjct: 224 VTP--PPLEQVRAQIVQQIQQEKLQAFEENLRKNARIQ 259


>gi|54288331|gb|AAV31619.1| predicted parvulin-like peptidyl-prolyl isomerase [uncultured alpha
           proteobacterium EBAC2C11]
          Length = 289

 Score = 92.8 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 73/303 (24%), Gaps = 49/303 (16%)

Query: 18  TYFVLIIFCIVPIVSYKSWAMSSRI-RTTINGEVITDGDISKRIALLKL---QKINGELE 73
              ++    ++   +    A   RI   T+NGE I   D+ ++   L     Q       
Sbjct: 10  FICLIAGATLLAGTTNMVQADEDRIPVGTVNGETIWLDDVMRQAERLPAKFRQAPMESYF 69

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
              V ++I   +       +         +                              
Sbjct: 70  NQLVTDMIDSKIAADAARAAKYDTKKEIASA----------------------------- 100

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
             +  A + +    +         +  +E           +  +     +L         
Sbjct: 101 -MKTAADRVLAESWIGEKISGDVTDAAIEKAYKTFVADTASREQVTAAHIL--------- 150

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS 253
                +   K    S              ++     + G         + P F+N     
Sbjct: 151 --VATEDEAKKIIASLAGGADFAELARSKSTGPSGPNGGSLGKFGRGQMVPAFENAAFAL 208

Query: 254 QNN--TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           ++   TT P  TQ G   I +  K            +  Q   T   +     +++LR+ 
Sbjct: 209 EDGKITTQPVQTQFGWHVIKVESKEIAPA--PTIEDMREQLVQTLSTQALGRVLEELRAK 266

Query: 312 AII 314
             I
Sbjct: 267 QEI 269


>gi|320103011|ref|YP_004178602.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Isosphaera pallida
           ATCC 43644]
 gi|319750293|gb|ADV62053.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Isosphaera pallida
           ATCC 43644]
          Length = 370

 Score = 92.8 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 87/285 (30%), Gaps = 16/285 (5%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQ--KINGELEKIAVQELIVETLKKQEIEKSGITF 97
            +    +N   IT  D+ + +A ++L       +   +AV+ L+   L  Q + + GIT 
Sbjct: 61  DQPLAVVNATPITRRDVQRIMAQIELAPGAEIQDAYNMAVEMLVNTELLFQFLNRQGITV 120

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
               ++    + + +           L   G      ++ L    +W       ++ +  
Sbjct: 121 TKKDLDDELARLSESLKAQNLTLEQALAANGATMQELQKDLTRAKLW-----EKYVTRVA 175

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK--D 215
             E                +   R +L  +P+   +      K    A ++ +   K   
Sbjct: 176 TEERLKKYVADNQDLFNGVKVTARHILLKVPEGASEEVKASIKAKLLAIKAEIESGKIEF 235

Query: 216 CNKLEKFASKI---HDVSIGKAQYL-LESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYI 270
               +K++         S G          L  +F +   K      ++P  T+ G   I
Sbjct: 236 AEAADKYSEDDGNKQQPSGGFLGEFYRRGQLIEEFAEAAFKCKPGVISDPVETEFGYHLI 295

Query: 271 AICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            + ++ +       K             +   E +   ++ A I 
Sbjct: 296 LVTNRDEGQPFDFEKG--RDIAFQQFESELREEVILAEKAKAKIE 338


>gi|254511943|ref|ZP_05124010.1| ppic-type ppiase domain protein [Rhodobacteraceae bacterium KLH11]
 gi|221535654|gb|EEE38642.1| ppic-type ppiase domain protein [Rhodobacteraceae bacterium KLH11]
          Length = 417

 Score = 92.8 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 98/290 (33%), Gaps = 12/290 (4%)

Query: 6   FTSLSDFIKLLTTYFVLIIF----CIVPIVSYKSWAMSS--RIRTTINGEVITDGDISKR 59
              +S F K L +     I       +  ++       S       +N +++T  ++ +R
Sbjct: 1   MQLISGFTKFLRSGCRASILPVMALALTAMATPQAQGQSLFSPAIRVNQDIVTWYELEQR 60

Query: 60  IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
              L+L       E    + LI + L+KQ + ++GI      V       A    LS+E+
Sbjct: 61  QQFLELLGAPNSSEIEVREALIDDRLRKQVMREAGIEAAPEAVETGIDDIAARGNLSSEE 120

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
           F   L+  G+     + ++A Q  W D +   F+ +    E EI     +     ++  L
Sbjct: 121 FLQLLNDAGVSRETVRDFVADQLTWRDYISARFLSQARPSEDEINRALGQGGGGGLQVLL 180

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
              ++   P    Q +    +  +  +E                      + G+  +L  
Sbjct: 181 SEIIIPVTPQTLSQAEALADEISQLPDEQSFASAAAQYSAAD-----TRTNGGRLDWLSL 235

Query: 240 SDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
           S+L P  Q ++        T P      V    +   R++       + +
Sbjct: 236 SNLPPALQPVILGLKNGEITEPLSLSNAVALFQMRGIREVATAAPRYSEI 285



 Score = 38.5 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 24/46 (52%)

Query: 269 YIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           ++ +C +    GE   +  ++   T  +++      +++LRS+A+I
Sbjct: 369 FLMLCSRTRDLGENTTRVDVANALTQQRLQAFADSLLEQLRSDAVI 414


>gi|110677781|ref|YP_680788.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Roseobacter denitrificans OCh 114]
 gi|109453897|gb|ABG30102.1| PPIC-type PPIASE domain protein [Roseobacter denitrificans OCh 114]
          Length = 285

 Score = 92.8 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/311 (11%), Positives = 78/311 (25%), Gaps = 51/311 (16%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL--- 65
           +   +++L    +        +    +   +  +  T+NGE I  G +    A L     
Sbjct: 1   MQKHLRILAFSALTAAIAAPVVAQDDTALTADTVIATVNGEDIKLGHMIAARATLGERYN 60

Query: 66  QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
           Q    +L    V++LI +T   Q IE           N                      
Sbjct: 61  QMPAEQLWNGIVEQLIQQTALAQGIESLSAGEAMALENQE-------------------- 100

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
                                 ++          +++   + +        E+    +L 
Sbjct: 101 --------------RSLKAAKAIEIGLEQAVTEEDIQAAYDAEFGNLDPEEEFNASHIL- 145

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ 245
                        ++     +E+            + ++     + G+  +     + P 
Sbjct: 146 ----------VATEEEAIAVKEAIDGGANFAATAREKSTGPSGPNGGELGWFSTGMMVPS 195

Query: 246 FQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
           F+           ++P  TQ G   I + D R     I               +      
Sbjct: 196 FEAATIALEVGEVSDPVETQFGWHVITLNDTRQKN--IPTLEEAREGIEARLAQDAALGI 253

Query: 305 VKKLRSNAIIH 315
           ++   + A I 
Sbjct: 254 IQNAAAGAAIE 264


>gi|110801593|ref|YP_697584.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Clostridium perfringens SM101]
 gi|110682094|gb|ABG85464.1| PPIC-type PPIASE domain protein [Clostridium perfringens SM101]
          Length = 248

 Score = 92.8 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 78/285 (27%), Gaps = 46/285 (16%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKI----NGELEKIAVQELIVETLKKQEIEKS 93
           M  ++  T+    IT   I + IA    Q+     + E ++  +++ I       E  K 
Sbjct: 1   MEKKVLATVGNTEITSDYIDEIIARYPAQQQAMLASDEGKRQVLEQAIA-FELMSEFAKE 59

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
                +        + A+                               +   +V    +
Sbjct: 60  TGLDKTEEFKDQLNKFAKE------------------------------LLAQMVMKKTL 89

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                 + E     ++ K   V    +      +   +   +          EE      
Sbjct: 90  SSVTVTDDEAKDFYEEHKENFVELETVTAKHILVASEEDAKKVE--------EEIASGSI 141

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAI 272
              +   K++S       G      +  + P+F+           + P  TQ G   I +
Sbjct: 142 TFEDAANKYSSCPSKEQGGNLGSFSKGMMVPEFEEAAFNLELGVVSAPVKTQFGYHLIKV 201

Query: 273 CDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            DK +        +K  +       + +K   E +K+LR    + 
Sbjct: 202 EDKTEAKTKAFEDVKEQVVNMLIQERQQKKYLELIKELREKYGVK 246


>gi|71066075|ref|YP_264802.1| peptidylprolyl isomerase [Psychrobacter arcticus 273-4]
 gi|71039060|gb|AAZ19368.1| possible peptidylprolyl isomerase [Psychrobacter arcticus 273-4]
          Length = 465

 Score = 92.8 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 56/163 (34%), Gaps = 3/163 (1%)

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
                ++I     K  + T+      T    +  ++LQ     +++I D           
Sbjct: 300 ITPEGIDIIKLANKKSSDTMLVPQWNTRHILVKVDELQTDALAEQKINDLYSQLRNGAAF 359

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAIC 273
                 ++         G   ++ E  +   F+ ++K +   + + P+ TQ G   + I 
Sbjct: 360 DGLASTYSDDPGSAGRGGDLDWVGEDQMIGPFEAMMKNTAVGDYSAPFKTQFGWHILKIE 419

Query: 274 DKRDLGGEIALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            KR        +  +           + + +++++LR+ A I 
Sbjct: 420 GKRQQDVSDEYRRTMARQALYQRLAPQAKEDWLQELRAGAYIQ 462



 Score = 85.9 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/310 (12%), Positives = 92/310 (29%), Gaps = 26/310 (8%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ--------KINGELEKIAVQEL 80
            +        +  I   +N   I   D+   IA  + +          + +L+   +  L
Sbjct: 48  SVARLTPANSTDGIIALVNENAILKSDLIAAIAQTQARAKAAGEPIANSAQLQSEVLNAL 107

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHAR--NTGLSAEDFSSFLDKQGIGDNHFKQYL 138
           I+  L+   I++ G+  D   +N    Q A+       A         Q       +  L
Sbjct: 108 ILRELQLSLIKRVGLNPDEAAINKRLEQIAKAEGLNSIAALQQRLDSAQAGSYATLRAQL 167

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
              +    + +     +    E +I A     +   + +   +TV   +P     ++   
Sbjct: 168 IEDAAIQALQQRQITNRVRISEQDIDAFLASPEAKRLNQSEYQTVHVRVPYMDDYSRLSE 227

Query: 199 QKRIK--------DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL 250
            +R                  +           S    +  G   +   + L  +  + +
Sbjct: 228 AQRNDALKVAQKLRTRLLVPNIDVAEAIAASQGSYPIPLQGGDMGFHKAAALPTELSSEI 287

Query: 251 KK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN-------TPTKIEKHEA 302
            K      + P +T +G++ I + +K+     +  +              T    E+   
Sbjct: 288 TKLEVGAVSAPLITPEGIDIIKLANKKSSDTMLVPQWNTRHILVKVDELQTDALAEQKIN 347

Query: 303 EYVKKLRSNA 312
           +   +LR+ A
Sbjct: 348 DLYSQLRNGA 357


>gi|167754419|ref|ZP_02426546.1| hypothetical protein ALIPUT_02713 [Alistipes putredinis DSM 17216]
 gi|167659044|gb|EDS03174.1| hypothetical protein ALIPUT_02713 [Alistipes putredinis DSM 17216]
          Length = 469

 Score = 92.8 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/278 (11%), Positives = 84/278 (30%), Gaps = 14/278 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-- 70
           +     +   ++  I    + K   M  R+   + G  I   ++ +    L  Q+     
Sbjct: 1   MSKKILFCAALVLAIFAGAAQKRQVMLDRVVAVVGGSSILWSEVDEYAGELVEQRRQQGY 60

Query: 71  ----ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
               +    A+++L+++ L   +     +    + +      H +     A   ++   K
Sbjct: 61  TSDRDPHDEALEQLLMQKLLFNQALIDSVDVSYSGIAQRVEAHLQALIDDAGSIAALETK 120

Query: 127 QGIGDN---HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT----VREYL 179
           Q +         +    +  +   +++  + K   +  E+    +K    +      +Y+
Sbjct: 121 QHMPIFNVREMLRQRYEEQAYAQAMQSSVVGKIKVIPGEVERYYKKTDPDSLPTIPEQYV 180

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
              +       K   Q   ++ +   E       +       ++     +S G+      
Sbjct: 181 YAQITRFPASIKEAKQRTKERLLDMRERIIKGQTRFDIMARMYSMDGSAISGGELDPQPL 240

Query: 240 SDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR 276
                QF +          +    TQ G   I + D++
Sbjct: 241 DGFVRQFADALADLKPGQVSEVVETQYGYHLIQLIDQK 278


>gi|49475012|ref|YP_033053.1| peptidyl-prolyl cis-trans isomerase [Bartonella henselae str.
           Houston-1]
 gi|49237817|emb|CAF27012.1| Peptidyl-prolyl cis-trans isomerase [Bartonella henselae str.
           Houston-1]
          Length = 317

 Score = 92.8 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/282 (10%), Positives = 72/282 (25%), Gaps = 48/282 (17%)

Query: 40  SRIRTTINGEVITDGDISK---RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGIT 96
           S +   I+G+ +T G + +    I     +  + +     ++  +      +   K GI 
Sbjct: 49  SHVMAVIDGKEVTAGQLDELALEINPGLARFSDEQRRITVLKAYLDMLALAKAAIKEGID 108

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
                                                    +    +     K   + + 
Sbjct: 109 KSETYNKR------------------------------MAVMRDNVLQQLYFKQTVVDQI 138

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
            + ++E    K+        E   R +L              +K  +   +   +     
Sbjct: 139 SDADLETLYKKEVAALPKEDEVKARHIL-----------VKTKKEAEAIIKRLNKGESFE 187

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAICD 274
              +K ++       G   Y     +   F++          T  P  +  G   I I D
Sbjct: 188 EIAKKNSTDGSAAVGGDLGYFSHGQMVKPFEDAAFGLKVGEYTKKPVESPFGWHIIKIED 247

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +R       +   +        I++   + +  LR    + Y
Sbjct: 248 RRVKQP--PVFDDVKEMLRTQLIKERYQKLIADLRKKIDVKY 287


>gi|194289564|ref|YP_002005471.1| peptidylprolyl isomerase; exported protein [Cupriavidus taiwanensis
           LMG 19424]
 gi|193223399|emb|CAQ69404.1| putative Peptidylprolyl isomerase; putative exported protein
           [Cupriavidus taiwanensis LMG 19424]
          Length = 264

 Score = 92.8 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/308 (15%), Positives = 90/308 (29%), Gaps = 51/308 (16%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           + TT     +  ++   S  + A +      +NG+ I    + K IA    Q  + EL  
Sbjct: 1   MKTTVLSFSLAAVLAAGSLPAIAQN---AAVVNGKAIPSAKLDKLIAGTG-QPDSPELRT 56

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
            A   LI   L  QE  K G+                               Q       
Sbjct: 57  RARNMLIDRELLVQEANKRGL------------------------------TQRDDVQEQ 86

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
            +   +  +   V + D++  +G  + E+     K+K+              +       
Sbjct: 87  LEQARLNVLAGAVFE-DYVKTHGASDAELRKQYDKIKSQFGNGKEYHARHILVEKEADAK 145

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKK 252
               + +            K  ++ +  +       + G   +   S   P+F   +   
Sbjct: 146 AIIAKIK---------GGAKFEDQAKAASKDPGSAANGGDLDWANSSSYVPEFSAAMTGL 196

Query: 253 SQNNTTN-PYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTK--IEKHEAEYVKK 307
            +   T+ P  TQ G   I + D RD        +K  L+      +    +     +K 
Sbjct: 197 KKGQMTDTPVKTQFGWHIIELVDVRDAKIPSFEEVKPQLTQMLMGDQNWQREQFQAMMKS 256

Query: 308 LRSNAIIH 315
           L+  A I 
Sbjct: 257 LKDKARIQ 264


>gi|171914423|ref|ZP_02929893.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verrucomicrobium
           spinosum DSM 4136]
          Length = 299

 Score = 92.8 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 90/286 (31%), Gaps = 16/286 (5%)

Query: 43  RTTINGEVITDGDISKRIALLKLQ----------KINGELEKIAVQELIVETLKKQEIEK 92
              INGE I D  I +    +K            + + E   +A   L    L +QE  +
Sbjct: 2   ALIINGETIDDEIIEEEFRHIKGHYERALQVSCCERDPEFRGMAKDNLASRALLQQESRR 61

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
                          +     G   + + S            +  LA       +++N +
Sbjct: 62  RFPEVSEGEAKARLEKLIEQAGGEEQFYMSIGMPFKDESL-LQDNLANGVRMDKMLQNVY 120

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
             +    E +I A  +      + E  IR    S+  +  +++  V + +++  E  L  
Sbjct: 121 SPEPEPGEADIQAYYEANVKHFLSEEQIRVSHISLNLSGARSRAEVYQTMRELREQVLGG 180

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIA 271
                   +  S           +  + +   +F+ +         +  + TQ G     
Sbjct: 181 ADFDALAAEHNSNKDMSP--DLGWFKKGEFMEEFEAIAFSMRDGEISPVFTTQLGFHICR 238

Query: 272 ICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           + D++    +    ++  + A+      +    E+++ L+  A I 
Sbjct: 239 LTDRKAAVPKPLDEVREAVRARILEEYRDGKFNEFLETLKGGAKIE 284


>gi|312129916|ref|YP_003997256.1| ppic-type peptidyl-prolyl cis-trans isomerase [Leadbetterella
           byssophila DSM 17132]
 gi|311906462|gb|ADQ16903.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leadbetterella
           byssophila DSM 17132]
          Length = 440

 Score = 92.8 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/304 (10%), Positives = 89/304 (29%), Gaps = 13/304 (4%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    VL +  ++P+          +I   I+   I   ++    A    +  N      
Sbjct: 1   MLKKVVLALIMVLPLCVKAQSTNVDKIIAKIDNYYILKSEVESLRARYAKEGQN-VSSCE 59

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           A++ + ++ L   + E   +  +++ +                +  + +D+ G      K
Sbjct: 60  ALESMAIQKLLVAKAEIDSVIVENDQIKDQLDARMNQMVTVYGNEKNIVDQFGKSIETLK 119

Query: 136 QYLAIQSIWP---DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             +  +       + +K     K     +E+    + +   ++ +   +  L  I     
Sbjct: 120 NEMRSELKEQMTAEKMKGVIYEKVSVTPLEVKKFYESIPKDSLWKVGQKVKLSQIVRLAP 179

Query: 193 QNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQN 248
                    I   ++ + R           ++++       + G   +     + P+F+ 
Sbjct: 180 LTPELRTDLITKLQDIKRRIQSGEDFGKLAKEYSEDQGSAANGGDLGWSKRGMMVPEFEA 239

Query: 249 LLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN-TPTKIEKHEAEYVK 306
                     ++   ++ G   I    KR   G+     ++                Y+ 
Sbjct: 240 AAMSLDTGQISDIVESEYGFHLIQTLAKR---GQEYRARHILLMPDYQILSTDEPKRYLD 296

Query: 307 KLRS 310
            LR 
Sbjct: 297 SLRK 300


>gi|331270660|ref|YP_004397152.1| peptidil-prolyl cis-trans isomerase [Clostridium botulinum
           BKT015925]
 gi|329127210|gb|AEB77155.1| peptidil-prolyl cis-trans isomerase [Clostridium botulinum
           BKT015925]
          Length = 247

 Score = 92.8 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/285 (11%), Positives = 80/285 (28%), Gaps = 47/285 (16%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKI----NGELEKIAVQELIVETLKKQEIEKS 93
           M +++  ++NG+ IT+ DI   I     ++       + +K  +++LI          K 
Sbjct: 1   MENKVLASVNGKEITEKDIEVAIKRFPQERQAYFAGEQGKKQLLEQLIA-FELFHAYGKE 59

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
                +           ++                                  +  N  +
Sbjct: 60  NEFDKTQEFIDGIEIMKKD------------------------------ALTQMSVNKVL 89

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
            +    + E+       K   V    +      + + +L N         +  E      
Sbjct: 90  SEVQVTDKEVEDYYTANKKNFVVGETVSAKHILVDNEELAN---------EVAEKIKNGM 140

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAI 272
                 +++++       G      +  + P+F+           + P  TQ G   I +
Sbjct: 141 SFDEAAKEYSTCPSKAQGGNLGKFGKGQMVPEFEEAAFNLEIGKLSEPVKTQFGYHLIEV 200

Query: 273 CDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            DK          +K  + A     +       +V++L++   + 
Sbjct: 201 EDKNKATEKSFDEVKDMIKANLIQQRQTAKYTTFVEELKNKYNVE 245


>gi|169830779|ref|YP_001716761.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169637623|gb|ACA59129.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 297

 Score = 92.8 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 83/289 (28%), Gaps = 21/289 (7%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
            +     +        +NGE I+  ++   +          ++ +  +QELI   L  QE
Sbjct: 27  ALGGCGRSGDVETVAVVNGEPISRDELYAEM--------YAQMGQQTLQELITRKLIIQE 78

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
               G+      V     +   +   S E+F   L   G+     +Q + +Q I    V+
Sbjct: 79  GRAQGVEISDADVQTRLDEVIESGFSSREEFQEALKAYGLEQKDLEQQIRVQLI----VE 134

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
                +    E E+    +  +    +   +      +   +       +          
Sbjct: 135 GVLGKQIQLDEAEVKEYFEANRKRFGQPESLEARHIVLKTREEAESVRSELVSGADFAVL 194

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY 269
            R              +  +  G+        +    + L             T  G   
Sbjct: 195 AREKSVDPLTAGGGGGLGTIRYGEL-------IPAWQKALFGMETGLVNEVLETPSGFHV 247

Query: 270 IAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           + I +K          ++A +  + T  +I +    +V  L + A + Y
Sbjct: 248 VEILEKHPAVEPVFADVEAKVRRELTEKEITQLYPAWVDSLWTKAKVEY 296


>gi|150388008|ref|YP_001318057.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus
           metalliredigens QYMF]
 gi|149947870|gb|ABR46398.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus
           metalliredigens QYMF]
          Length = 319

 Score = 92.8 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/323 (9%), Positives = 89/323 (27%), Gaps = 36/323 (11%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--- 70
           K +     L+   ++         +S      +NG  ++  +  K +AL KL        
Sbjct: 7   KSIGLLTALLAIMLLITACSTPAQLSQDAAAEVNGATVSMEEFDKTLALFKLSYEMQYGY 66

Query: 71  ----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
                            +++  +++LI + L  ++  +SG+T     +   +  +     
Sbjct: 67  NEDIFQQDIGGMTLLENIKEGIMEKLISDVLIAEKAVESGLTVSEEEITEAYEPYRVYEE 126

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
                 +   + +       +Q      ++    ++ +       E        +   + 
Sbjct: 127 SDENFSAFLKENEIDETFIREQVKKDILLFK--YRDFYNENLEMTEEAARKFFDENPEMF 184

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGK 233
             +      +                   +               +++++     V  G 
Sbjct: 185 STQEASARHILV----------ADLALADELVVRLESGEDFATLAQEYSTDPGSAVQGGD 234

Query: 234 AQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN 292
             +     + P+F+             P  TQ G   I + D+ D   +      +    
Sbjct: 235 LGFFPRGVMVPEFEEASFTQPIGEVGAPVQTQHGYHIILVEDRVDNSYD---FDEMKESI 291

Query: 293 TPTKIEKHEAEYVKKLRSNAIIH 315
                     +++++L  NA + 
Sbjct: 292 MGYLKNLEFEKHLEELVGNAEVQ 314


>gi|303238145|ref|ZP_07324681.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio
           cellulolyticus CD2]
 gi|302594191|gb|EFL63903.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio
           cellulolyticus CD2]
          Length = 249

 Score = 92.8 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/282 (11%), Positives = 83/282 (29%), Gaps = 40/282 (14%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS 99
           +++   I    IT  D+   +  +  +          V++LI +  +++      I    
Sbjct: 3   NKVFAKIGNREITSQDLQNFLQSVDPKIATQFTSPDGVKQLIAQLAEQELFYLDAIEKGL 62

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
                +  +  R      + ++                            + F+      
Sbjct: 63  ENETEYLEEIERIKVNFLKQYAL---------------------------SKFLKSVTIN 95

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
           E+E      + K +      ++     + D    N+   +              K  +  
Sbjct: 96  EVEAKKFYNENKGLFNEPESVKASHILVQDEATANKILSE---------IDEGKKFEDAA 146

Query: 220 EKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAICDKRD 277
           +++++     + G   +  +  + P+F+       +   T  P  TQ G   I +  KRD
Sbjct: 147 KEYSTCPSKANGGDLGFFSKGQMVPEFETAAFALDKGEITKTPVKTQFGFHIIKLTGKRD 206

Query: 278 LG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
                    +  + A+    K +    + V +L+    +  +
Sbjct: 207 AMELTFSEAEDKVKAELMAKKQQAEYYKKVDELKGKYDVKLF 248


>gi|260685020|ref|YP_003216305.1| putative foldase lipoprotein [Clostridium difficile CD196]
 gi|260688678|ref|YP_003219812.1| putative foldase lipoprotein [Clostridium difficile R20291]
 gi|260211183|emb|CBA66654.1| putative foldase lipoprotein (late stage protein export
           lipoprotein) [Clostridium difficile CD196]
 gi|260214695|emb|CBE07344.1| putative foldase lipoprotein (late stage protein export
           lipoprotein) [Clostridium difficile R20291]
          Length = 321

 Score = 92.8 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/316 (11%), Positives = 93/316 (29%), Gaps = 32/316 (10%)

Query: 26  CIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI----------------- 68
            I+ +      +       T+ G  I+  +  K IAL K                     
Sbjct: 1   MILVVSVTACSSSKGETVATVEGTKISSDEFKKTIALYKDSMEQTYGKDIWDKEVEKGVK 60

Query: 69  -NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
              + + + + +LI   +   + +K  +      V   F +     G   +         
Sbjct: 61  YKDKFKDLILDQLITTEVIYSQAKKDNLLPKKEDVEKSFKELKDAMGKDEKYKEQLKKLG 120

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
              +    Q      +     +++F  K    + E+       K+   ++ +  + +   
Sbjct: 121 IDDEFLRDQQEKD--LAMQNYQSNFAKKTKISDEEMKKYYDTHKDEFKKDEVEASHILLK 178

Query: 188 PDNKLQNQ------GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             +              +K+ ++A +            +K++        GK  +     
Sbjct: 179 TVDDNNKPLSDKEKAEAKKKAEEALKEVKSGEDFAKVAKKYSQDTSASDGGKLGFFSRGQ 238

Query: 242 LHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDK-RDLGGEIALKAYLSAQNTPTKIEK 299
           +  +F++      +   ++   TQ G   I + D+  +       K  +  Q    K ++
Sbjct: 239 MVAEFEDAAFSMKKGEVSDLVETQYGYHIIKVTDRINEQTSFEDAKETIKDQLLKNKYQE 298

Query: 300 HEAEYVKKLRSNAIIH 315
                ++KL   A + 
Sbjct: 299 Q----IEKLTKEAKVE 310


>gi|258405892|ref|YP_003198634.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfohalobium
           retbaense DSM 5692]
 gi|257798119|gb|ACV69056.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfohalobium
           retbaense DSM 5692]
          Length = 626

 Score = 92.4 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 24/268 (8%), Positives = 74/268 (27%), Gaps = 12/268 (4%)

Query: 52  TDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA- 110
           +  +   R   L   +   +L +  +   I   +K           D    +    +   
Sbjct: 132 SRYEQLLRANQLTPAQFEADLTRSLLTNKIQRAVKLPASVSEAQAKDLFAFSQEKARMEY 191

Query: 111 -----RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
                ++    A +  +           F++   ++  +  +            + EI A
Sbjct: 192 ALFAWQDQPGLAPNEEAVKHYYQENQKQFQRPARMEMDYLLLTPEGLAAAQPVSDEEIKA 251

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR---LPKDCNKLEKF 222
             +       R+  ++     I   +  +   V +  + A+    R            ++
Sbjct: 252 YYEANPGEFERQEELKARHILIEVPEGADDQQVTEAREQAQALVERLRDGADLAELAREY 311

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD--LG 279
           +        G   +    ++   F+           ++P  T  G   I + D++     
Sbjct: 312 SDGPSSAQGGDLGWFARGEMVEAFEAAAFALDTGEISDPVRTSFGFHVITVEDRKPSGTQ 371

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKK 307
               ++  +  +    K  +  ++ + +
Sbjct: 372 PFEEVQDEIRQEIGADKAAQKMSDLLDE 399



 Score = 63.2 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 59/232 (25%), Gaps = 15/232 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +        ++++F    + +  +      +   + GE I   D  +  
Sbjct: 1   MLDAMRKNAQSWAIKFLFALIILVFVFWGVGNLGNDQA--TVVAEVQGEAILIRDFQQAY 58

Query: 61  ALLKLQKING------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
                                 +L++  + +LI   L  +E +K G+   +  V  +  Q
Sbjct: 59  QRTVENLRRKQPDISREDFEQMQLKRQVLNDLITSQLLFREAKKLGLAVTAPEVRQYVQQ 118

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML-KYGNLEMEIPANK 167
                    +   S  ++    +               +        K      E  A  
Sbjct: 119 MPVFQNADKQFDPSRYEQLLRANQLTPAQFEADLTRSLLTNKIQRAVKLPASVSEAQAKD 178

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
               +            +        N+  V+   ++ ++   R  +     
Sbjct: 179 LFAFSQEKARMEYALFAWQDQPGLAPNEEAVKHYYQENQKQFQRPARMEMDY 230



 Score = 38.1 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/89 (12%), Positives = 28/89 (31%), Gaps = 4/89 (4%)

Query: 232 GKAQYLL-ESDLHPQFQNLLKKSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAY-- 287
           G+  ++          +++    Q      PY  Q+G     + ++         +    
Sbjct: 530 GRRGFIPGLGMNPQLVESVFNAEQGQWLEKPYKVQQGYVLARLAERVAPDMSKWEEQQSL 589

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
              Q   ++ +     Y+ +LR  A +  
Sbjct: 590 WVGQLQQSRKQALFQAYLTQLREKAEVKI 618


>gi|300770932|ref|ZP_07080809.1| peptidyl-prolyl cis-trans isomerase [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300762205|gb|EFK59024.1| peptidyl-prolyl cis-trans isomerase [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 458

 Score = 92.4 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/319 (11%), Positives = 105/319 (32%), Gaps = 20/319 (6%)

Query: 15  LLTTYFVLIIFCIVPI-VSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ--KINGE 71
           ++   +VL+   +  + +++    +  R+  T+   +I   DI  + +    Q    N +
Sbjct: 1   MIKQLYVLLFCVLGSVNLTFAQGKIVDRVVATVGANIILQSDIDMQYSQNLAQGMSPNED 60

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
            +   +Q+L+ + L  Q+     I    + V+             A              
Sbjct: 61  FKCYILQQLLTQKLLAQQAVLDSIEVSESEVDDNLNNRLNVMTRQAGGKERLESFLNRSL 120

Query: 132 NHFKQYLAI---QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
             +K+ +     + +    ++ + + K     +E+    + +   ++  +     +  I 
Sbjct: 121 LQYKEEMRTSVAEQLKAQKMQQNIVQKIDVTPLEVKRYFEGLNKDSLPYFDTEVEIGEIV 180

Query: 189 DNK---LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHP 244
                  + +   +KR +D  +  +           ++      V+ G   +    +   
Sbjct: 181 MYPVLTKEEKEASRKRAEDLRKQIVDGSDFGTIARLYSEDKGSAVAGGDLGFSTRDNYVK 240

Query: 245 QF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP-----TKIE 298
           +F     K      +  + T+ G  ++ + ++R   GE     ++     P      + +
Sbjct: 241 EFSAVAFKLKPGEISQVFETEYGFHFLQVLERR---GEEVRARHILVSIKPTNASLERTK 297

Query: 299 KHEAEYVKKLRSNAIIHYY 317
                  +KL +   I +Y
Sbjct: 298 VKMDSLYQKLINK-KIDFY 315


>gi|210613468|ref|ZP_03289727.1| hypothetical protein CLONEX_01934 [Clostridium nexile DSM 1787]
 gi|210151168|gb|EEA82176.1| hypothetical protein CLONEX_01934 [Clostridium nexile DSM 1787]
          Length = 245

 Score = 92.4 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/281 (10%), Positives = 71/281 (25%), Gaps = 46/281 (16%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKIN----GELEKIAVQELIVETLKKQEIEKS 93
           MS  +   + GE IT  +    +  +  ++       +  +  +++LI            
Sbjct: 1   MSQEVLAVVAGEEITQAEFDAFLQGVPREQQPYLSNPQFREQCLEQLI------------ 48

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
                           A+N      + +    K        +           + +    
Sbjct: 49  -----------ALHMFAKNGEEMKLEETEEFKK------LVESARRDILAQMAMRETLKD 91

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
           +     E+E      K           + +L              +K     E       
Sbjct: 92  VVVSEEEIEAYYEANKQHFTKGDTVSAKHIL----------TDSEEKCNSILESITTGEK 141

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAI 272
           +     ++F++       G         +  +F++        +   P  TQ G   I +
Sbjct: 142 EFETAAKEFSTCPSGAKGGDLGEFGRGQMVKEFEDAAFAAEIGHVVGPVKTQFGYHLIKV 201

Query: 273 CDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             K +        +K  +       K  +     V++++  
Sbjct: 202 EKKNEAIVASLEEVKETIRRTLLQQKQNEAYNTKVEEMKKK 242


>gi|157362935|ref|YP_001469702.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga lettingae
           TMO]
 gi|157313539|gb|ABV32638.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga lettingae
           TMO]
          Length = 343

 Score = 92.4 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/344 (12%), Positives = 107/344 (31%), Gaps = 50/344 (14%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-- 70
           ++ +  + +++I  +V I      A +  +   +NG  IT  ++++   + +L       
Sbjct: 1   MRKVFMFGLILILSLVAIGQETQPATA--VVAEVNGVAITMEELNREANVDRLLSQIQSV 58

Query: 71  -------------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY----FFV 107
                                ++  +  LI + L KQ  EK G+T   + +         
Sbjct: 59  DATFYDVLVNTSEGVNLLLRYKREVLNNLIDQVLIKQIGEKMGVTVSKDNIENMVSTELN 118

Query: 108 QHARNTGLSAEDFSSFLDKQG-IGDNHFKQYLAIQSIWPD---VVKNDFMLKYGNLEMEI 163
           +     G++  D   +L + G    N FK  L           +++          E E 
Sbjct: 119 KTLTQYGMTESDLDWYLKQAGLGDINSFKDRLRWIFTVQQTVSLIQQQVTSSATVTEEEA 178

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
               ++ +     E   + +  ++   +  ++           E      +        +
Sbjct: 179 RQFYEQNREYFAVEEAAKLLRITVDSKEKADKA---------LERIRAGEEFSQVASDVS 229

Query: 224 SKI-HDVSIGKAQYLLESD--LHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKRDL- 278
           +        G   ++      +  + +  +    +     P  T  G E   I DKR   
Sbjct: 230 TDPLSKGKAGDLGWVERGSGLISEEIEEKIFVSPKGAILGPLQTSVGWEIYRIIDKRPKG 289

Query: 279 -GGEIALKAYLSAQNTPTKIEKHEAEYVKK----LRSNAIIHYY 317
                 +   +       K ++    ++ +     +++++I+ Y
Sbjct: 290 YENFEDVVNDIYQHLIQQKAQQLWQTWINEQFIPFKNSSVINIY 333


>gi|326790776|ref|YP_004308597.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           lentocellum DSM 5427]
 gi|326541540|gb|ADZ83399.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           lentocellum DSM 5427]
          Length = 330

 Score = 92.4 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/334 (12%), Positives = 96/334 (28%), Gaps = 43/334 (12%)

Query: 13  IKLLTTYFVLIIFCIVPIV----------SYKSWAMSSRIRTTINGEVITDGDISKRIAL 62
           +KLL    VL++  ++             S  +      +  T+    +T   + +++  
Sbjct: 1   MKLLKKGIVLLMVGLLGFGVVGCSKVADNSQTNNKTEDVVIATVGDGKVTKKALDQQLVY 60

Query: 63  LKLQKI----------------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF 106
           L                       E +++ V  L+   L   + ++  +   ++ V+   
Sbjct: 61  LDSLMQWQYGEDYESNEEAMNYYNEQKRLMVDYLVEIQLIISKAQEYDVNVTADDVDEEL 120

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
                +   +   F   L   G+     KQ L    I   VV           + EI   
Sbjct: 121 ELLKSDY-DTEAAFEEALTTSGMSLEELKQMLKEDLIVNQVVTAS-TKDITVSDEEIKTY 178

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
                +    E                     ++  K+ +    +     +  E++ +  
Sbjct: 179 YDGNIDSFKTEAGATMSHIL---------VATEEEAKEIKAKYDKGTSFEDLAEEYGTDA 229

Query: 227 HDVSIGKAQYLLESD---LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK---RDLGG 280
                G  +Y+  +          +  +  +   + P  TQ G   I + D      +  
Sbjct: 230 TKSQGGLLEYIPYNSTKYDADFLASAKQLDEGEVSEPVKTQNGWHLIKVTDVNKEERIKS 289

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              +K  +  Q    K  +   + VK+ + +  I
Sbjct: 290 YDEVKDEIKEQLLIQKQNEVVEKKVKEWKESTNI 323


>gi|326336412|ref|ZP_08202582.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325691285|gb|EGD33254.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 461

 Score = 92.4 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/326 (10%), Positives = 93/326 (28%), Gaps = 12/326 (3%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
             +      + I  L T F+    CI  + +  S      +   +   +I + DI + + 
Sbjct: 3   LKRNNLKSMNRINYLGTLFLSFFLCIPCLWAQSSKTKIDGVAAVVGDYLILETDIDRALI 62

Query: 62  LLKLQK--INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
            L+ Q            + +L+ + L   +  +  I      +     +          D
Sbjct: 63  ELRSQNVDTKNVTRCQLLGKLMEDKLYVNQAIQDSIKVSDTDIRDGVNRRIEFLTDQLGD 122

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDV----VKNDFMLKYGNLEMEIPANKQKMKNITV 175
               +      D    +      +  +     +K   +        E+     K+    +
Sbjct: 123 IQKVIQFYHKDDEQSLRDELFDILRQNELSSRMKAKIVENIEVTPEEVKQFFNKIPKDEL 182

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL---EKFASKIHDVSIG 232
                   +  I       Q  V K I+  +E +  + ++           S        
Sbjct: 183 PTIGTELEIAQIVIEPKAPQSEVNKVIEQLKEIKKDVQENGASFPTKAILYSADRATGGK 242

Query: 233 KAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ 291
           +  +  +S    +F+++     +   ++P+ T  G   + +   R     +     +   
Sbjct: 243 ELTFNRKSSFAKEFKDVAFSLQEGEISDPFKTDFGWHILQVVKIRGKEVSVRHILMVPQI 302

Query: 292 NTPTKIEKHEAEYVKKLRSNAIIHYY 317
              +   +   + +  +R+  I   +
Sbjct: 303 PQNSL--EEAKKKINDIRNKIINKEF 326



 Score = 37.3 bits (84), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/289 (7%), Positives = 72/289 (24%), Gaps = 23/289 (7%)

Query: 45  TINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
            +    +T  ++ +    +       EL  I  +  I + + + +  +S +      +  
Sbjct: 159 IVENIEVTPEEVKQFFNKI----PKDELPTIGTELEIAQIVIEPKAPQSEVNKVIEQLKE 214

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI--WPDVVKNDFMLKYGNLEME 162
                  N          +   +  G               + DV  +    +  +    
Sbjct: 215 IKKDVQENGASFPTKAILYSADRATGGKELTFNRKSSFAKEFKDVAFSLQEGEISDPFKT 274

Query: 163 IPANKQKMKNIT-VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
                         +E  +R +L      +   +   +K      +   +        + 
Sbjct: 275 DFGWHILQVVKIRGKEVSVRHILMVPQIPQNSLEEAKKKINDIRNKIINKEFTFAEAAKN 334

Query: 222 FAS-KIHDVSIGKA-------QYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKG-----V 267
           F+  K      G+             + + P   + +     +  ++P + +        
Sbjct: 335 FSDEKETKEDGGQLLNPENYSTKFELTRMEPLLYSQVSSLKDDEISSPIMDEDRTGRKMY 394

Query: 268 EYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           +   I ++        I     +       K  +   +++ +      I
Sbjct: 395 KIYRITNRIGEHTADFINDYTRIRDLALKEKQLEAVGKWMNEAIKKTFI 443


>gi|302871263|ref|YP_003839899.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574122|gb|ADL41913.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 335

 Score = 92.4 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 37/318 (11%), Positives = 94/318 (29%), Gaps = 20/318 (6%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI----- 60
               +       T  VL+I  I        +   +R    +NGE IT  + +        
Sbjct: 1   MDKRTKIAIFFITAIVLLIIVIAVTPEMVKYVDENRAVAIVNGEKITKKEFAINYRSQIN 60

Query: 61  ----------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
                       +  +    ++++  +  LIV  ++ Q+  K  IT  S        Q  
Sbjct: 61  YYGLDKAFLSQKVGDKTYEQQIKENVLDGLIVRQIELQQARKRNITLTSTEKKAIDQQIE 120

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
           +    S         +        +     Q I   +V   +     + +      +   
Sbjct: 121 QYKSDSQSGAEF--KQYLQTIGATENEYKDQVIKSQIVSKLYDEVTKSQKASDAEIESYY 178

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDV 229
            +       ++        N  + +   +++ ++  +            +K++       
Sbjct: 179 NSHKSDFVEVKASHILFKVNDSKEEAAKKRKAEEVLQMIKSGQSFEKLAQKYSEDETTKQ 238

Query: 230 SIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
             G   Y  +  +  +F++     +    ++   T  G   I + D++ L     +K  +
Sbjct: 239 KSGDLGYFRKGQMVKEFEDAAFSLNIGEISSVVKTSYGFHIIKVTDRKQLSLNE-VKDEI 297

Query: 289 SAQNTPTKIEKHEAEYVK 306
            +     K +++    V+
Sbjct: 298 KSTIESQKKDEYYQSLVE 315


>gi|225873725|ref|YP_002755184.1| peptidyl-prolyl cis-trans isomerase, PpiC type [Acidobacterium
           capsulatum ATCC 51196]
 gi|225793223|gb|ACO33313.1| peptidyl-prolyl cis-trans isomerase, PpiC type [Acidobacterium
           capsulatum ATCC 51196]
          Length = 372

 Score = 92.4 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 42/324 (12%), Positives = 99/324 (30%), Gaps = 39/324 (12%)

Query: 31  VSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI-------AVQELIVE 83
           +S  + A  + +  T+NG+ I    +         ++     +          +  LI E
Sbjct: 40  ISGCNRAHKADVLATVNGKPIMKSQVDLLYEANVGKQPEKPTKVQGDIVRLNILSRLINE 99

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            +  Q   K  +   +  V     +       + ++F   L +Q +  +  KQ +  Q  
Sbjct: 100 EILMQRAAKMNLVASNEDVESRLNEIKA--PFTPDEFQKQLAQQHLTLDALKQQIRNQLT 157

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ---------- 193
              +   +   K    + +I A     K           +   +  N  +          
Sbjct: 158 EQKLFNKEINSKIDVTDDQITAYYNAHKAEFNLPQPQFHLAQILVTNIPENAKNSGNLQN 217

Query: 194 ----NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL---HPQ 245
               N    +++I+  ++              F+    +  + G   ++ + +L      
Sbjct: 218 SKAMNDAEAKRKIQMLDDRLKNGDDFGTLASNFSENPQNSSNGGDMGFISQQELQSDPDV 277

Query: 246 FQNLLKKSQNNTTNPY---VTQK-----GVEYIAICDKRDLG----GEIALKAYLSAQNT 293
           +  + K S    T       TQ      G     + DK   G     +  ++  +  +  
Sbjct: 278 WGAVSKLSPGEITPVLPVYATQDHKKVIGYAIYKLLDKEGAGQLELSDPRVQQSIRQRLH 337

Query: 294 PTKIEKHEAEYVKKLRSNAIIHYY 317
            ++ +  +  Y++ LR  A +  Y
Sbjct: 338 ESRSQLMQNAYLEMLRDQAHVVNY 361


>gi|296879875|ref|ZP_06903848.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP07]
 gi|296429164|gb|EFH15038.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP07]
          Length = 321

 Score = 92.4 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 37/316 (11%), Positives = 93/316 (29%), Gaps = 32/316 (10%)

Query: 26  CIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI----------------- 68
            I+ +      +       T+ G  I+  +  K IAL K                     
Sbjct: 1   MILVVSVTACNSSKGETVATVEGTKISSDEFKKTIALYKDSMEQTYGKDIWDKEVEKGVK 60

Query: 69  -NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
              + + + + +LI   +   + +K  +      V   F +     G   +         
Sbjct: 61  YKDKFKDLILDQLITTEVIYSQAKKDNLLPKKEDVEKSFKELKDAMGKDEKYKEQLKKLG 120

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
              +    Q      +     +++F  K    + E+       K+   ++ +  + +   
Sbjct: 121 IDDEFLRDQQEKD--LAMQNYQSNFTKKTKISDEEMKKYYDTHKDEFKKDEVEASHILLK 178

Query: 188 PDNKLQNQ------GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             +              +K+ ++A +            +K++        GK  +     
Sbjct: 179 TVDDNNKPLSAKEKAEAKKKAEEALKEVKSGEDFAKVAKKYSQDASASDGGKLGFFSRGQ 238

Query: 242 LHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDK-RDLGGEIALKAYLSAQNTPTKIEK 299
           +  +F++      +   ++   TQ G   I + D+  +       K  +  Q    K ++
Sbjct: 239 MVAEFEDAAFSMKKGEVSDLVETQYGYHIIKVTDRINEQTSFEDAKETIKDQLLKNKYQE 298

Query: 300 HEAEYVKKLRSNAIIH 315
                ++KL   A + 
Sbjct: 299 Q----IEKLTKEAKVE 310


>gi|239826178|ref|YP_002948802.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp.
           WCH70]
 gi|259534743|sp|C5D6L9|PRSA_GEOSW RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|239806471|gb|ACS23536.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp.
           WCH70]
          Length = 276

 Score = 92.4 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/304 (10%), Positives = 93/304 (30%), Gaps = 41/304 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +  + ++     V  +S  +   S  I  T +G  IT  +    +           + K 
Sbjct: 1   MRKWMIVAAVAAVFGLSACNNGDSEVIVKTKDGN-ITKEEFYNEMK--------ARVGKE 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +++L+ E +  ++ + +    D    N   +   +   +  ++                
Sbjct: 52  VIRDLVHEKVLSKKYKVTDKEIDKEIENLKEMYGTQYDLVVQQNGEKA------------ 99

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +        + +   M      + E+    +  K      +++               
Sbjct: 100 --IRDMVKLDLLRQKAAMEDIKVTDKELKDYYKNYKPKIRASHIL--------------- 142

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              +K  ++ +    +        ++++       + G   +     +  +F++   K  
Sbjct: 143 VKDEKTAEEIKTKLDKGEDFAKLAKQYSQDPGSAPNGGDLGWFGPGKMVKEFEDAAYKLK 202

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE-KHEAEYVKKLRSNA 312
               ++P  T  G   I + DK +      +K  +  +   +K++       V+KL  +A
Sbjct: 203 VGQVSDPVKTDYGYHIIKVTDKEEKKPFNEMKEEIEFEVKQSKLDPAKVQSKVEKLIKDA 262

Query: 313 IIHY 316
            +  
Sbjct: 263 KVEI 266


>gi|149926466|ref|ZP_01914727.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Limnobacter sp.
           MED105]
 gi|149824829|gb|EDM84043.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Limnobacter sp.
           MED105]
          Length = 260

 Score = 92.4 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 84/306 (27%), Gaps = 51/306 (16%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDG--DISKRIALLKLQKINGEL 72
           +L T         V ++     A +      +NG+ I     D        + Q  + E+
Sbjct: 1   MLKTTLKATCLAAVLVLGTPVHAQN---AAVVNGQSIPSALVDFIMAEQEKRGQAASPEM 57

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
                QELI + + KQE  K G+                                     
Sbjct: 58  RATIRQELINQEVMKQEAVKKGLGSSPEVKYQV--------------------------- 90

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                +  Q+I  + ++ DF       + E+     ++  +        + +        
Sbjct: 91  ----QMMNQAILANALREDFYKNTKLTDKEVETAYAEIAKMMGGSEFRASHILV------ 140

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK 251
                 +   K   +   +  K  +  +  +       + G   +   +   P+F   + 
Sbjct: 141 ----EQEAEAKAIIDQLGKGGKFADIAKAKSKDPGSAPNGGDLDWANPNSFVPEFSQAMV 196

Query: 252 K-SQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
              +   T  P  +Q G   I + D R           +  Q     I     EY  KL 
Sbjct: 197 GLKKGEYTKTPVKSQFGYHVILLADTRQATP--PKLEEIRPQLEQKMINDKWEEYQGKLL 254

Query: 310 SNAIIH 315
           S A + 
Sbjct: 255 SGAKVK 260


>gi|238898000|ref|YP_002923680.1| PPIC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465758|gb|ACQ67532.1| PPIC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 624

 Score = 92.4 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 47/400 (11%), Positives = 106/400 (26%), Gaps = 88/400 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M     TS  +    +  +F+++ F    + SY     +      +NGE I+   + + +
Sbjct: 1   MMEYFRTSTKNLTLKIILFFIVLSFIAGGLGSYFIGRATDY-VAKVNGEKISRAQLEQAL 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                    +L K  + +LI + L  Q     G+  D   V  
Sbjct: 60  QNERHRLKQQLGEHFLALADNKDYMQQLRKKVIDQLINQILIVQYTHHLGLKIDDEHVKD 119

Query: 105 FFV---QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                     +     + + + +   G   + F +    Q I   +++            
Sbjct: 120 TIRKMSYFQTDNQFDNKKYLNLISNMGYTPDEFAELQRQQLINDQLLQIFGNSEFVLPNE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                N F  +    + EI     K KN       ++     + 
Sbjct: 180 IKRISALLLQKRHVRLATLNLNTFQNRQKVTDEEIKDYYDKNKNTFTNPEQVKVSFIIMD 239

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA------------------------- 223
              ++N+  V K        +        +L+ ++                         
Sbjct: 240 AESMENKITVNKSEIKDFYEQHSAEFIQPELKNYSVIQLKTKKEADTTLDKLKKGALFSD 299

Query: 224 -------SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
                    I     G+  +L       + +      +   +    +  G     + D +
Sbjct: 300 LAKNKSIDSISRKKGGQLGWLEPDTTVDEIKQANLTEKGQLSGVIESSTGYFIFRLNDIK 359

Query: 277 D--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              +     ++  L  +    K  +      KK+ S A+I
Sbjct: 360 PSYVKPLSIVRNQLIEKIKQEKAIQAYYVLQKKV-SEAMI 398


>gi|332141940|ref|YP_004427678.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551962|gb|AEA98680.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 630

 Score = 92.4 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 49/408 (12%), Positives = 103/408 (25%), Gaps = 96/408 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++         +     +++ F    + SY   +  +    T+NGE I+  ++ +  
Sbjct: 1   MLERIREGSQGPWAMAIIALIVLSFVFAGVGSYL-TSNGTTAVATVNGEEISAQELERAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + Q  +                 +  K  +  LI E L +Q+    G+      +  
Sbjct: 60  QNQRAQMESQYGESIAQLFSSEQYLADFRKNVLDRLIAEKLIQQQATNMGLRVSDEQIRE 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN----------- 150
             VQ            E F + L + G     F+ YL  Q     +              
Sbjct: 120 TIVQMPEFQFGGQFDNERFQAILRQNGFQVADFRDYLRTQMTQNQLAAALTNSSFALDGE 179

Query: 151 ----------------------DFMLKYGNLEMEIPANKQKMKNITVREYLIRT------ 182
                                 +F       + +I A           E  ++       
Sbjct: 180 VEQANALQRQTRNAKYVLVSSDEFADSIEVTDADIEAFYNNNIASFDTEEQVKLAYVKLS 239

Query: 183 -------------VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
                         + +  DN L + G  ++R             D  K +  + K    
Sbjct: 240 VEDLKGRVSVDEDAVRTYYDNNLGSYGTEEQRRVSHILIEAGDDADAAKAKAESLKAEID 299

Query: 230 SI--------------------GKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGV 267
           S                     G   ++    + P F       ++  + ++   T+ G 
Sbjct: 300 SGADFAALAEANSDDTFSAENGGDLDFITPEMMDPAFDEAAFSLENVGDVSDVVETEFGY 359

Query: 268 EYIAICDKRDLGG--EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             I + + ++        +   +          +   E    L   A 
Sbjct: 360 HVIKLTEVKEAQVKTFDEVAGEIRDTLLYDAAMEKYFELQNTLAEIAF 407


>gi|163856017|ref|YP_001630315.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella petrii DSM
           12804]
 gi|163259745|emb|CAP42046.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella petrii]
          Length = 258

 Score = 92.4 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 86/278 (30%), Gaps = 46/278 (16%)

Query: 43  RTTINGEVITDGDISKRIALLKLQ--KINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
             T+NG+ I+   + + + LL  Q      +L +   QE+I   +  Q  EK G+   ++
Sbjct: 22  VATVNGKAISQQSLDQFVKLLVSQGATDTPQLREQVKQEMINRQIFVQAAEKDGVAKQAD 81

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                LA Q I    +  D++ K+   +
Sbjct: 82  VQTEI-------------------------------ELARQGILVRALMADYLAKHPVTD 110

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            +I A   K K     +   +     + D K  N    Q +            K  +  +
Sbjct: 111 QQIQAEYDKAKQQQAGQMEYKVRHILVEDEKTANDLLAQIKGNK--------SKFADLAK 162

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT-NPYVTQKGVEYIAICDKRD 277
           + +         G   +   ++    F + +    +      P  TQ G   I + D R 
Sbjct: 163 QNSKDPGSAAKGGDLGWASPTNYVKPFADTVSSLKKGQLADKPVQTQFGWHIIEVEDTRP 222

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +  E      +  Q      ++    Y K+LR  A I 
Sbjct: 223 V--EFPPLDQVRPQLEEMLRQQTLTAYQKELREKATIK 258


>gi|153952806|ref|YP_001393571.1| peptidylprolyl isomerase [Clostridium kluyveri DSM 555]
 gi|219853471|ref|YP_002470593.1| hypothetical protein CKR_0128 [Clostridium kluyveri NBRC 12016]
 gi|189037913|sp|A5N4J2|PRSA_CLOK5 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|254783411|sp|B9DY54|PRSA_CLOK1 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|146345687|gb|EDK32223.1| PrsA [Clostridium kluyveri DSM 555]
 gi|219567195|dbj|BAH05179.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 341

 Score = 92.4 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 37/330 (11%), Positives = 91/330 (27%), Gaps = 40/330 (12%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL---- 72
                +       ++     A++      +NGE IT  D+ K    ++L     +     
Sbjct: 12  LIAVFIFSVTGCNMIEKTPEAIAKSTVAEVNGEKITRSDLDKDPNTIQLITQVKQQYGEN 71

Query: 73  --------------EKIAVQELIV-----ETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
                         ++  + +LI      +  K+ ++        S+          +N 
Sbjct: 72  YKENEDAVNTIKTQKEQILDDLITNKVVAQKAKELKLLPDETKLKSDMETQIAQLKKQNF 131

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---FMLKYGNLEMEIPANKQKM 170
              AE F++ L  QG  +  FK     Q      ++             + EI       
Sbjct: 132 NDDAEQFNTALKAQGFTEESFKAMFLSQLRTQQTLEKVTESISKNIKITDKEIEDYYNTN 191

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDV 229
           K+    +     +   +   + + +   ++                   ++ +       
Sbjct: 192 KSKYTEQPNKMHLAHILVKTEDEAKKVKKR--------LDDGEDFAKVAKEVSQDTASKD 243

Query: 230 SIGKAQYLL---ESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IAL 284
           + G    +               L   +   + P  +  G   I    K +   +   A+
Sbjct: 244 NGGDLGTVNYDNSGYDADFMAGALALKEGAISAPVKSSFGYHIIKCIKKEEYPVKALSAV 303

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           K  +  Q    K     ++ +++ +  + I
Sbjct: 304 KDQIKTQLESDKKNSLVSQKIQEWKKASTI 333


>gi|147676453|ref|YP_001210668.1| parvulin-like peptidyl-prolyl isomerase [Pelotomaculum
           thermopropionicum SI]
 gi|146272550|dbj|BAF58299.1| parvulin-like peptidyl-prolyl isomerase [Pelotomaculum
           thermopropionicum SI]
          Length = 324

 Score = 92.4 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 38/320 (11%), Positives = 88/320 (27%), Gaps = 36/320 (11%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--------- 70
           F+     +V +      +  SR   T+NGE IT G++S+R+  +K               
Sbjct: 8   FIAAAVFLVIVAVLSGCS--SRAVATVNGEKITAGELSQRLEEIKSNLEKQGFDFSGDKG 65

Query: 71  -----ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
                 L +  ++++I   L  QE +K G       V             + E       
Sbjct: 66  KAFMESLRQETLEQMINTRLMLQEAKKLG-PLTPEQVQEIIKPLKEQFSSAEEYQDFLAQ 124

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
            +   +               + +          E +I     +      R   ++    
Sbjct: 125 IKMSEEEAAYILN--------LQEQVTGDVAPPAEADIKKYYDEHLEEFSRPEQLQVRHI 176

Query: 186 SIPDN-------KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
               +               ++  ++A               + +      + G      
Sbjct: 177 LFFVDGGDKGYPVQHTDAEAREMAEEAIAQLKAGKDFAELAREKSEDSGTRADGGLYTFS 236

Query: 239 ESDLHPQFQNLLKK-SQNNTT-NPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTP 294
             +   +F +          T +P  T+ G   I +  K          ++  ++     
Sbjct: 237 RDEAVKEFADAAYALKVGEYTADPVKTEYGYHIIKLEKKIPARQDPFEEVRQDIAGLLLE 296

Query: 295 TKIEKHEAEYVKKLRSNAII 314
              ++   E++++ +  A I
Sbjct: 297 QARQEKFGEFMQQAKDRAEI 316


>gi|145628832|ref|ZP_01784632.1| thymidylate kinase [Haemophilus influenzae 22.1-21]
 gi|144979302|gb|EDJ88988.1| thymidylate kinase [Haemophilus influenzae 22.1-21]
          Length = 246

 Score = 92.4 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 86/244 (35%), Gaps = 12/244 (4%)

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
            ++ +++SG+  D   +++     A   GL+   F   LD QGI  N F+Q +A Q +  
Sbjct: 1   MQKAVQESGVKIDPREIDHIVEDTAARNGLTYGQFLDALDYQGISLNTFRQQIANQMVMG 60

Query: 146 DVVKNDFMLKYGNLEMEI---------PANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
            V         G    E+          A ++      + +      +    +  L +  
Sbjct: 61  AVRNKAIQESIGVTREEVVALGQKMLEEAKEKGTAQKVMGKEYEVRHILLKLNPLLNDAQ 120

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQY-LLESDLHPQFQNLLKKSQ 254
             ++  K   +         +   K++       + G   Y   E+      Q ++K  Q
Sbjct: 121 AKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPETYAPQFAQTVVKSKQ 180

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKHEAEYVKKLRSNAI 313
              + P+ T+ G   + +   RD              +   T+++    ++VK LR  A 
Sbjct: 181 GVISAPFKTEFGWHILEVTGVRDGDLTAEAYTQKAYERLVNTQLQDATNDWVKALRKRAN 240

Query: 314 IHYY 317
           I Y+
Sbjct: 241 IQYF 244


>gi|312142429|ref|YP_003993875.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halanaerobium sp.
           'sapolanicus']
 gi|311903080|gb|ADQ13521.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halanaerobium sp.
           'sapolanicus']
          Length = 340

 Score = 92.0 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 46/337 (13%), Positives = 87/337 (25%), Gaps = 35/337 (10%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAM------SSRIRTTINGEVITDGDIS-----KR 59
            FIK +      IIF +  + +             +     +NGE I+  ++        
Sbjct: 2   IFIKKVFV-LTAIIFLVFSMSAMAQNIENTMSLDQTGPAAVVNGEEISRQELEGFAALNE 60

Query: 60  IALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           I +  LQ                    E  +  + +LI   L  QE +  G+      +N
Sbjct: 61  ILMDILQSNQEFGTVLLQTESGQELIEEFMRYKLDQLISTKLMVQEAKNRGLEVSDQEIN 120

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
               Q               L+     +           +    +   F+ K      E 
Sbjct: 121 QIIDQQIAGIKQQNNLNDQQLEMALQQEGFASLDEYKSLLIESNMDRFFIEKLRTDITEE 180

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
                        E   +  + +             K  ++               ++ +
Sbjct: 181 ITISDAEVEEFYNENQAQFAIPAEYRISHILFNEADKA-EEVLTQIESGADFAEMAKEHS 239

Query: 224 SKIHDVSIGKAQYLLESD---LHPQFQNLLKKSQNNTTN-PYVTQKGVEYIAICDKRDLG 279
                 + G   ++   D            +      +  P  TQ G   I I D RD  
Sbjct: 240 IGPTAENGGDLGFIAADDRGIDAVFLNAAKELEVGQVSESPVETQFGFHIIKITDYRDGS 299

Query: 280 G--EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                 +K  L  +    +  +   E++  LR +A I
Sbjct: 300 SREFAEIKDELKEEMLSQRANQLWNEFIIGLREDAEI 336


>gi|323490390|ref|ZP_08095605.1| foldase protein PrsA [Planococcus donghaensis MPA1U2]
 gi|323396060|gb|EGA88891.1| foldase protein PrsA [Planococcus donghaensis MPA1U2]
          Length = 288

 Score = 92.0 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 25/304 (8%), Positives = 76/304 (25%), Gaps = 26/304 (8%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +    ++ I       +   +          +  + IT   + +++              
Sbjct: 1   MKKMIYISIGVLAATAIFILAAFNGDETVAKVGDKEITKEALYEKLVATSGAAT------ 54

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             +  +I   +  QE EK+ +      ++     +    G +     +            
Sbjct: 55  --LDAMISNEVVNQEAEKAEVEVTQEEIDAEMAVYEEQYGGAEGLEQALASS-----GMS 107

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
              L  +      V+          + +I    ++ K    +   +              
Sbjct: 108 IADLEEEMKTYLKVEKIIGPDIEITDEQISTYFEENKETFAQASKVEANHIL-------- 159

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK- 252
               Q+   + +              +++    +    G        ++ P+F+      
Sbjct: 160 -VETQEEADEVKAKLDDGDDFAELAAEYSVDTSNAEDGGALGEFGAGEMTPEFEEAAFSL 218

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
             +  ++P  T  G   I +  K +         K  +        +    A ++ +   
Sbjct: 219 KVDEISDPVETDYGFHIIQVTGKTEATEANLEDSKEQIKETLFDEALNTQYAAWLAEKTE 278

Query: 311 NAII 314
           +  I
Sbjct: 279 SYNI 282


>gi|239780227|gb|ACS15392.1| PpiC-type peptidyl-prolyl cis-trans isomerase [uncultured bacterium
           FLS12]
          Length = 306

 Score = 92.0 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 28/293 (9%), Positives = 90/293 (30%), Gaps = 19/293 (6%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQ-----------KINGELEKIAVQELIVETLKK 87
            + +   +NGE + +  I      ++             K    ++ +A   ++   L  
Sbjct: 15  ENAMALVVNGERVEEARIENEARQIEANPELAVDEQDPDKRKEAVQAMAKDHVVTGVLIN 74

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           QE+ +  ++   + +   F   A+      +             +  K+ L ++     +
Sbjct: 75  QEVARRHMSIPPHELEAAFEAVAQQQDAKDKPPEQ-GGWDENQADAVKKNLEMRMKIDRL 133

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNIT--VREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
           +           E ++ A  ++ K+            ++  + D  + ++      +KD 
Sbjct: 134 LDEVCRDVPEPTEEDVLACYEESKDRFAVPEMIHAAHIVKHVQDGNIMDRQAAYNEMKDI 193

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQ 264
                +         + +      S G         +  +F++++        +  + + 
Sbjct: 194 ANEIDKGATFEELAARHSDCPD--SGGDLGVFPRGQMVQEFEDVVFALEVGQVSGIFSSC 251

Query: 265 KGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            G+    + ++R         +   +               +V +L+++A+I 
Sbjct: 252 FGLHIAKLYERRPRVDKSFDEVADEVRKACATELENTRIDAFVDELKASAVIE 304


>gi|297182861|gb|ADI19012.1| parvulin-like peptidyl-prolyl isomerase [uncultured alpha
           proteobacterium HF0070_05I22]
          Length = 296

 Score = 92.0 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 35/309 (11%), Positives = 80/309 (25%), Gaps = 42/309 (13%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           L    + +T +F       V + S  + A       T+NG+ I   D+      L  +  
Sbjct: 12  LKVRFERITRHFGYGTLAAVCLASTIAQANEQISVGTVNGKDIWLDDVLHAAERLPQEFQ 71

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
              LE     +L+ + +                 +      A       +        Q 
Sbjct: 72  QTPLENY-FSQLVADII-----------------DSQLAATAARFDAYDKKPEVAAAMQ- 112

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                     A + +    +      +     ++   +K      +  +     +L    
Sbjct: 113 --------LAANRVLAESWLAEKVRAEITETAIQSAYDKFVADTASREQVTASHIL---- 160

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
                     +   K                ++ ++     + G         + P F+ 
Sbjct: 161 -------VETEAEAKAVIAVLQDGGDFAELAKEKSTGPSGPNGGALGTFGRGQMVPAFET 213

Query: 249 LLKK-SQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
                +  + ++ P  TQ G   I +  K            + AQ       +     ++
Sbjct: 214 AAFSLTIGSYSDTPVQTQFGWHVIKVDGKDITPA--PDLEAMRAQLANNLSTQTLGRLLE 271

Query: 307 KLRSNAIIH 315
           +LR++  I 
Sbjct: 272 ELRASQDIQ 280


>gi|222100637|ref|YP_002535205.1| Basic membrane protein [Thermotoga neapolitana DSM 4359]
 gi|221573027|gb|ACM23839.1| Basic membrane protein [Thermotoga neapolitana DSM 4359]
          Length = 329

 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/333 (12%), Positives = 100/333 (30%), Gaps = 43/333 (12%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL--- 72
           +   F++I+         ++   SS +   +NG+ IT   +     +  + K   ++   
Sbjct: 1   MKKVFLVILLVTTATFFSQATTTSSTVVAIVNGQPITSDLLELEADINGILKSIAQIDMR 60

Query: 73  ------------------EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR--- 111
                             +   +  LI + L +Q  EK G+      VN    +  +   
Sbjct: 61  FFNVLTGTEEGLRLLLKYKMEVLNSLIDDLLIQQLAEKEGVGVTDEEVNAEVEKRLKETV 120

Query: 112 -NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
            + G++ ED   FL   G GD    +      +   +       K            Q  
Sbjct: 121 ESMGITLEDLDKFLQSAGYGDLETFKKRLKWHLKTQLSLQRLQEKITQDATVTVEEAQNY 180

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS 230
            N     Y +   +     +  +     +           +         K A      +
Sbjct: 181 YNQNKEAYRVPAAVHLYRISAEEKGKIDEA-----LSRIRKGEDFLEVATKVA------T 229

Query: 231 IGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAY 287
            G   ++ E +L    ++ + +  +     P+ ++ G     + +KR         +K  
Sbjct: 230 GGDLGWIEEGELEKDLESVIFEAPEGAILGPFESKGGFMLYKVVEKRASSYKKFEEVKEE 289

Query: 288 LSAQNTPTKIEKHEAEY----VKKLRSNAIIHY 316
           +  +    K  +   ++     ++ + N+ I  
Sbjct: 290 IINKLLSEKKAQIWNDWFNKTFEEFKKNSHIEI 322


>gi|255321569|ref|ZP_05362727.1| trimethylamiNe-N-oxide reductase 1 [Campylobacter showae RM3277]
 gi|255301425|gb|EET80684.1| trimethylamiNe-N-oxide reductase 1 [Campylobacter showae RM3277]
          Length = 270

 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 81/280 (28%), Gaps = 40/280 (14%)

Query: 44  TTINGEVITDGDISKRIALLK---LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
            T+NG  ITD D++  +A +    L+++  + +K  + E I   L   E +KSG+     
Sbjct: 23  ATVNGTAITDKDVAFTLAAMPGVTLEQLPKDTQKKVIDETINRKLLLDEAKKSGLDKSDE 82

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                    ++  D+            E
Sbjct: 83  YKAAL-------------------------------EELKNNLALDLWMKRIFDNIKVSE 111

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            EI     K K        +R     +   K  N      +    +E   +  +      
Sbjct: 112 GEISDFYNKNKAEFAVPAQVRAKHILVATEKDANDIIAALKGLKGDELVKKFEELAK--S 169

Query: 221 KFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT-NPYVTQKGVEYIAICDKRDL 278
           K   +    + G+  +  +S +   F +      +   T  P  +  G   I   D +  
Sbjct: 170 KSTDQGSAANGGELGWFGQSQMVKPFADAAFALKKGEVTQKPVKSNFGYHVILKEDSKAA 229

Query: 279 GG--EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G      +K  +       K      +   +LRS A + Y
Sbjct: 230 GTVGLNEVKPQIEGNIKMEKFRNDIRKRGDELRSKAKVEY 269


>gi|293603516|ref|ZP_06685937.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
           43553]
 gi|292817952|gb|EFF77012.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
           43553]
          Length = 160

 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 13/140 (9%), Positives = 45/140 (32%), Gaps = 2/140 (1%)

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
                  +       + ++   Q+  +  +       K  +   +++        G+  +
Sbjct: 6   MQTRARHILIKTSTVMSDETARQRLEQVRQRLVSGGAKFEDMARQYSQDATAPQGGELGW 65

Query: 237 LLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD-LGGEIALKAYLSAQNTP 294
           L   +  P F+  +        + P  +  G   I + ++R     +   +         
Sbjct: 66  LNPGETVPPFEAAMNALKPGEISPPIQSPFGWHLIQVEERRQHDATDDLARMKARQILFE 125

Query: 295 TKIEKHEAEYVKKLRSNAII 314
            + +    +++++LR+ A +
Sbjct: 126 RRAQPAFEDWLEQLRAQAYV 145


>gi|182626803|ref|ZP_02954541.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
           perfringens D str. JGS1721]
 gi|177907849|gb|EDT70447.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
           perfringens D str. JGS1721]
          Length = 248

 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 80/285 (28%), Gaps = 46/285 (16%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKI----NGELEKIAVQELIVETLKKQEIEKS 93
           M  ++  T+    IT   I + IA    Q+     + E ++  +++ I       E  K 
Sbjct: 1   MEKKVLATVGNTEITSDYIDEIIARYPAQQQAMLASDEGKRQVLEQAIA-FELMSEFAKE 59

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
                +        + A+                               +   +V    +
Sbjct: 60  TGLDKTEEFKDQLNKFAKE------------------------------LLAQMVMKKTL 89

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                 + E  A  Q+ K   V    +      +           ++  K  EE      
Sbjct: 90  SSVTVTDDEAKAFYQEHKENFVELETVTAKHILV--------ASEEEAKKVEEEIASGSI 141

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAI 272
              +   K++S       G      +  + P+F+           + P  TQ G   I +
Sbjct: 142 TFEDAANKYSSCPSKEQGGNLGSFSKGMMVPEFEEAAFNLELGVVSAPVKTQFGYHLIKV 201

Query: 273 CDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            DK +        +K  +       + +K   E +K+LR    + 
Sbjct: 202 EDKTEAKTKAFEDVKEQVVNMLIQERQQKKYLELIKELREKYGVK 246


>gi|332530714|ref|ZP_08406644.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hylemonella gracilis
           ATCC 19624]
 gi|332039835|gb|EGI76231.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hylemonella gracilis
           ATCC 19624]
          Length = 266

 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 73/277 (26%), Gaps = 47/277 (16%)

Query: 43  RTTINGEVITDGDISKRIAL-LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
              +NG+ I    +       L+ Q    E+ +   Q +I   L  QE  + G+      
Sbjct: 33  LAVVNGKPIPTARVDALARQVLRGQPPTPEIMEELKQAVIDRELLAQEARRQGLAATPEY 92

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
                                                    +  ++V             
Sbjct: 93  RAQIEFAQES------------------------------LLIRELVARFQQTNPVTDAD 122

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
                ++ +     +EY  R +L             ++K             K     ++
Sbjct: 123 FQEGYQRFVAANGGKEYHARHILVPTEAEAQALLAQLKK-----------GAKFDALAKQ 171

Query: 222 FASKI-HDVSIGKAQYLLESDLHPQFQNLLKKS-QNNTTN-PYVTQKGVEYIAICDKRDL 278
            +         G   +       P+F   L+   +  T+  P  TQ G   + + D RD+
Sbjct: 172 HSKDPGSAARGGDLDWAPAQGYVPEFAAALQALGKGQTSEAPVQTQFGWHLLQVEDVRDI 231

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                    +  Q      ++   E+ K LR+ A I 
Sbjct: 232 QL--PSLNDVKPQLAQEIGQRKFEEFQKDLRAKAKIK 266


>gi|295676529|ref|YP_003605053.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1002]
 gi|295436372|gb|ADG15542.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1002]
          Length = 259

 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 80/278 (28%), Gaps = 48/278 (17%)

Query: 43  RTTINGEVITDGDISKRIALL--KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I        I  L  + Q+   +L++   +EL+   +  QE  + G+    +
Sbjct: 25  IAVVNGTPIPKSRADALIQQLVHQGQQDTPQLQQAVREELVNREILMQEALRRGLPNRPD 84

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q++    +  DF+      +
Sbjct: 85  IKAQI-------------------------------AVAQQTVVLRALIEDFVKNNQPTD 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+ A    +      +      +    + + ++     K                +   
Sbjct: 114 AEVTARYNALVKDAGGKEFHLHHILVDNEQQAKDLIAKIKA----------GASFEDLAR 163

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAICDKRD 277
           +++       + G   +       P+F +      +   T+ P  TQ G   I + D R 
Sbjct: 164 QYSKDPGSGKNGGDLDWSDPKAYVPEFADAAAHLQKGQMTDTPVHTQFGWHIIRVDDIRA 223

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +         + AQ      ++    + + LR NA I 
Sbjct: 224 VTP--PPLEQVRAQIVQQIQQEKLQAFEENLRKNAKIQ 259


>gi|209515375|ref|ZP_03264241.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           H160]
 gi|209504095|gb|EEA04085.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           H160]
          Length = 295

 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/286 (10%), Positives = 74/286 (25%), Gaps = 43/286 (15%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIE 91
           S  S   ++    T+N  VI+  +++  +    ++       +  V  L ++ L  Q   
Sbjct: 46  SATSSKEATDAALTVNDTVISQREMAMLVHQQPVRDEQPNSRQKIVDNLTMQILAAQAAT 105

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
           + G+       +                                       +    +K+ 
Sbjct: 106 QKGLDKSPEVQDQ------------------------------MDMSKTSILAQAYIKDF 135

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
           F               +        EY  R ++    D        + +           
Sbjct: 136 FASHKPTDAQLNAEYDKVKAAAAGNEYRARHIVVKSEDEAKAIIAKLNQDP--------- 186

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKS-QNNTT-NPYVTQKGVE 268
                      +         G   +   + + P+F + ++K  +   +  P  +Q G  
Sbjct: 187 -KAFSELASADSLDPVSKAKGGDLGWFDPARMVPEFASAVQKLGKGQISQEPIKSQFGYH 245

Query: 269 YIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            I + D R     +     +         ++   + +  +++ A I
Sbjct: 246 VIVVDDIRSKADSVPPFEQVKDSLAAHFEQEELLKALSDMKAQAKI 291


>gi|110799431|ref|YP_697171.1| peptidylprolyl isomerase [Clostridium perfringens ATCC 13124]
 gi|123049564|sp|Q0TMG9|PRSA_CLOP1 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|110674078|gb|ABG83065.1| putative foldase protein PrsA [Clostridium perfringens ATCC 13124]
          Length = 342

 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/331 (11%), Positives = 91/331 (27%), Gaps = 20/331 (6%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
             S+   +       ++       +V     A+      T+NGE IT G++   +  +  
Sbjct: 1   MVSVKKIVASALVGVLMFSAVGCNMVEKTQAAIDKTTVATVNGEKITLGEVDSHLKGVFA 60

Query: 66  QKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
           Q  +                 +  +  VQ L+ + +   E +K GI      +     + 
Sbjct: 61  QMKSQYGDKYMDDPQVAQQILQQRQSVVQGLVTDKVLGIEADKLGIKPSEEEIKKKVDEQ 120

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
             N      D      +         + +    +    V++  +      + +      +
Sbjct: 121 FENIKKGMGDNFDKALEAEGYTEDTFKDVIKNQVINQAVQDYIIKDVKVTDEDAQKYYDE 180

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
            K   V +         + +N+ + Q    +             K  N   +   K    
Sbjct: 181 NKQQFVAKDSGVLTKHLLFENEEEAQKAYDEIQSGKTTFNDLFTKYENNKSEN-KKPIAE 239

Query: 230 SIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAI---CDKRDLGGEIALKA 286
           ++G         +      L    +   + P  TQ G   I      +K        +K+
Sbjct: 240 NLGVVPAENSGLVQEFVDGLKPLKEGEISKPIKTQFGYHIIQAGATYEKGAQLPFDDVKS 299

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            +       K  +     + + + +  +  Y
Sbjct: 300 QIIQILKQQKDSEKFKADMDQWKKDLNVKVY 330


>gi|154148403|ref|YP_001406775.1| foldase protein PrsA [Campylobacter hominis ATCC BAA-381]
 gi|153804412|gb|ABS51419.1| foldase protein PrsA [Campylobacter hominis ATCC BAA-381]
          Length = 271

 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/300 (14%), Positives = 93/300 (31%), Gaps = 41/300 (13%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK----LQKINGELEKIAVQEL 80
                +    + ++++ +  T+NG  IT+ +I+  +A L     + K+   ++K  ++  
Sbjct: 4   ILFSTLSLVAAVSLNATVFATVNGMDITEREIAPIVAGLGPNVDISKLPDNIKKEILERS 63

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I++ L  +E + SG+                                          LA 
Sbjct: 64  IMQQLLLKEAKDSGVAKGERFNREL-------------------------------ELAK 92

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           + +   + + +        E +I A   K K   ++   I+     +             
Sbjct: 93  EMLTIRLWQEEKAKNIKVAENDIKAFYDKNKAKFMQPAQIKAGHILVKTEAEAKTIINDL 152

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT- 258
           +    ++            +K        + G   +  E  +   F +  K   +   + 
Sbjct: 153 KNFKGDDLVKNFA--ITAAQKSLEPAARQTGGALGWFSEHQMVKPFYDAAKALKKGEISL 210

Query: 259 NPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            P  TQ G   I   D +D         K  +       K+++   +  K LR+ A + Y
Sbjct: 211 KPVKTQFGYHVILKEDAKDAHQATFSEAKPTIENILKQEKLKETITKEAKDLRAKAKVEY 270


>gi|18309250|ref|NP_561184.1| hypothetical protein CPE0268 [Clostridium perfringens str. 13]
 gi|110800910|ref|YP_694723.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
           perfringens ATCC 13124]
 gi|168207845|ref|ZP_02633850.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
           perfringens E str. JGS1987]
 gi|168211827|ref|ZP_02637452.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
           perfringens B str. ATCC 3626]
 gi|168215167|ref|ZP_02640792.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
           perfringens CPE str. F4969]
 gi|168218257|ref|ZP_02643882.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
           perfringens NCTC 8239]
 gi|169344703|ref|ZP_02865666.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
           perfringens C str. JGS1495]
 gi|18143926|dbj|BAB79974.1| hypothetical protein [Clostridium perfringens str. 13]
 gi|110675557|gb|ABG84544.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
           perfringens ATCC 13124]
 gi|169297170|gb|EDS79284.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
           perfringens C str. JGS1495]
 gi|170660843|gb|EDT13526.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
           perfringens E str. JGS1987]
 gi|170710226|gb|EDT22408.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
           perfringens B str. ATCC 3626]
 gi|170713436|gb|EDT25618.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
           perfringens CPE str. F4969]
 gi|182379724|gb|EDT77203.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
           perfringens NCTC 8239]
          Length = 248

 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 80/285 (28%), Gaps = 46/285 (16%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKI----NGELEKIAVQELIVETLKKQEIEKS 93
           M  ++  T+    IT   I + IA    Q+     + E ++  +++ I       E  K 
Sbjct: 1   MEKKVLATVGNTEITSDYIDEIIARYPAQQQAMLASDEGKRQVLEQAIA-FELMSEFAKE 59

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
                +        + A+                               +   +V    +
Sbjct: 60  TGLDKTEEFKDQLNKFAKE------------------------------LLAQMVMKKTL 89

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                 + E  A  ++ K   V    +      +           ++  K  EE      
Sbjct: 90  SSVTVTDDEAKAFYEEHKENFVELETVTAKHILV--------ASEEEAKKVEEEIASGSI 141

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAI 272
              +   K++S       G      +  + P+F+           + P  TQ G   I +
Sbjct: 142 TFEDAANKYSSCPSKEQGGNLGSFSKGMMVPEFEEAAFNLELGVVSAPVKTQFGYHLIKV 201

Query: 273 CDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            DK +        +K  +       + +K   E +K+LR    + 
Sbjct: 202 EDKTEAKTKAFEDVKEQVVNMLIQERQQKKYLELIKELREKYGVK 246


>gi|329901823|ref|ZP_08272915.1| Peptidyl-prolyl cis-trans isomerase domain protein
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327549006|gb|EGF33618.1| Peptidyl-prolyl cis-trans isomerase domain protein
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 244

 Score = 92.0 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 83/277 (29%), Gaps = 47/277 (16%)

Query: 43  RTTINGEVI--TDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG+ I  +  D+  + A  + Q    EL K+  +ELI   +  QE +K G+   ++
Sbjct: 11  LAVVNGKSIPSSRADLMVKQAATQGQADTPELRKMVKEELINREVLVQEADKLGLGNSAD 70

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
             +                                +      +   +V +       +  
Sbjct: 71  VKSQL------------------------------EIARQSLVIRALVGDYVKKHPVSDA 100

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
                  +       +EY  R +L    D        ++              K  +  +
Sbjct: 101 DIKAEYDKFKATAGDKEYRARHILVEKEDEAKAIIVKLKA-----------GAKFEDLAK 149

Query: 221 KFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAICDKRDL 278
                    + G   +   +     F + +   ++ + T  P  TQ G   I + D R  
Sbjct: 150 ASKDPGSAANGGDLDWASPASFVKPFSDAMVALAKGSYTEVPVKTQFGFHVIKLEDTRAA 209

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                    +  Q + +  +K   EY ++LR+ A + 
Sbjct: 210 KV--PTLEEVKPQISESLQQKKLQEYQQELRAKAKVQ 244


>gi|310658175|ref|YP_003935896.1| ppic-type peptidyl-prolyl cis-trans isomerase [Clostridium
           sticklandii DSM 519]
 gi|308824953|emb|CBH20991.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           sticklandii]
          Length = 249

 Score = 91.7 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 83/286 (29%), Gaps = 47/286 (16%)

Query: 37  AMSSRIRTTINGEVITDGDISKRIALLKLQK----INGELEKIAVQELIVETLKKQEIEK 92
               ++   +    IT+ D+   +  L  Q        + ++  +QEL+ + L   E  +
Sbjct: 2   ENKEKVLAKVATHQITESDLEHMLKNLNPQIAANFQGEQGKQALLQELVNQKLFYLEALE 61

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
           S I  D+   +                                     ++        + 
Sbjct: 62  SSIENDAKFQSE-------------------------------FEKLKENFVTQYSIQNL 90

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
           +        E+ A   + K   +    ++     + D  L           + +    + 
Sbjct: 91  INSVSVTHEELEAYYNENKEGFISPQKVQASHILVSDVSLAE---------EVKGKLAQG 141

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIA 271
                  ++++S       G      E  + P+F+    K +    + P  TQ G   I 
Sbjct: 142 ESFEALAKEYSSCPSKERGGDLGMFGEGQMVPEFEEAAFKMAVGEISEPVETQFGFHIIK 201

Query: 272 ICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           + DK++ G      +++ L       K       ++  L+S   + 
Sbjct: 202 VTDKQESGLLSFEEVRSNLLRNMMAEKQGAIYQNHIADLKSKYNVE 247


>gi|224025969|ref|ZP_03644335.1| hypothetical protein BACCOPRO_02720 [Bacteroides coprophilus DSM
           18228]
 gi|224019205|gb|EEF77203.1| hypothetical protein BACCOPRO_02720 [Bacteroides coprophilus DSM
           18228]
          Length = 457

 Score = 91.7 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/292 (12%), Positives = 89/292 (30%), Gaps = 17/292 (5%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKR--IALLKLQKINGELEKIAVQELIVETLK 86
             VS+    +   +   +  E I   D+      A  + ++ +G+   +  +EL ++ L 
Sbjct: 19  GTVSHAQNNVIDEVVWVVGDEAILKSDVEDERLQAQYEGRRFDGDPYCVIPEELAIQKLY 78

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
             + E   +T     V      +               +         ++ L        
Sbjct: 79  LHQAEIDSVTVSEQAVLQEVETYTAWLIEQIGTKEKMEEYYNKTSTQIREMLRENMRNKQ 138

Query: 147 V---VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
           +   ++   +        E+     K+   ++   L +  +  I       +   ++   
Sbjct: 139 IVQEMQRKIVGDIKLTPAEVRNYFSKLPADSIPYILPQVEVQIITLEPKVTEEEKERIKS 198

Query: 204 DAEESRLRLPKDCNKLEKFASKI-----HDVSIGKAQYLLESDLHPQFQNLLKKSQN--N 256
           +  E   R+ K        A             G+  ++    L P+F N++    +   
Sbjct: 199 ELREFTDRINKGETTFSTLARMYSEDPGSARQGGEYGFMGRGQLVPEFANVVFNLTDTKK 258

Query: 257 TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
            +  + T+ G     + +KR   G+     ++     P   +K   E + KL
Sbjct: 259 ISKVFETEFGFHIAQLIEKR---GDRVSYRHIL--LKPRIDQKEIDEALAKL 305


>gi|224825281|ref|ZP_03698386.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
           2002]
 gi|224602202|gb|EEG08380.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
           2002]
          Length = 258

 Score = 91.7 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/296 (11%), Positives = 86/296 (29%), Gaps = 50/296 (16%)

Query: 28  VPIVSYKSWAMSSRIRT---TINGEVITDGDISKRIALLKLQKING--ELEKIAVQELIV 82
           + + +  +  +S+ +      +NG  I+   I   + +++ Q      +L+  A  +LI 
Sbjct: 5   LLLSTLTAAVLSTAVLAAPPVVNGTAISQSRIDAVVRMMEAQGQQSSPDLQAAARDQLIT 64

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
             + +Q   K G+                                        + +   +
Sbjct: 65  AEILRQAAVKKGLDKSPEYRAEL------------------------------ENMQTMA 94

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           +   ++  DF       + ++ A   K+K+    +         +P              
Sbjct: 95  LASRLI-KDFQRSNPVSDAQLRAEYDKIKSQFPEKKSYHARHILVPTEAEAKAV------ 147

Query: 203 KDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNN--TTN 259
               ++  +        ++ +       + G   +   S+    F   + K      T+ 
Sbjct: 148 ---IDALRKGKAFDQLAKEKSIDPGSKNNGGDLGWSEASNFVAPFSEAMTKLAKGQVTSE 204

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           P  T+ G   I + D R           +  Q     +     +++  L++ A I 
Sbjct: 205 PVKTEFGWHVIKLDDVRTEAA--PPVEQIRPQLEQRIMSGRIEKFISDLKAKASIQ 258


>gi|308050304|ref|YP_003913870.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ferrimonas balearica
           DSM 9799]
 gi|307632494|gb|ADN76796.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ferrimonas balearica
           DSM 9799]
          Length = 624

 Score = 91.7 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/398 (11%), Positives = 98/398 (24%), Gaps = 91/398 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+          +    V++ F +  + SY        +   +NGE IT  D+ +  
Sbjct: 1   MLEKIREGSQGVAAKIILGAVILSFALTGVYSYLGTNSEM-LAAEVNGEEITRYDLDQAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q++   G+    + +  
Sbjct: 60  QNEQARMRAQLGEMFDSLSADPTYMAGLRQSVLDRLIAERLIDQKVADLGLRVSDDQIQQ 119

Query: 105 FFVQHARNTGLSAEDFSSFLD---KQGIGDNHFKQYLAIQSIWPDVV------------- 148
             V           D + +     +  +     +  L        +V             
Sbjct: 120 AIVAMPEFQVDGKFDNARYQAVLRQNNLSGVQLRDMLRRDMSRQQLVVGLLGSEFVTDAE 179

Query: 149 --------------------KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                               + D+       + EI    Q  +        +      + 
Sbjct: 180 AQALTALQQQTRDLRYLLVSQADYNAGIEVSDSEISDFYQANQARFATPEEVSVEYVELA 239

Query: 189 DNKLQNQ----GFVQKRIKDAEESRLRLPKDCNKL------------------------- 219
            + L           K   D++ +  + P+                              
Sbjct: 240 VSDLAGDVSVTDEEAKAFYDSQANAYQQPERRLAAHMLFEGDDAQARAEAALARVRAGEA 299

Query: 220 ------EKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYI-- 270
                 E         + G+  ++    + P F   L    +  T++   T+ G + +  
Sbjct: 300 FAAVAAEASDDTFTAENGGELDWMTPGQMEPAFDAALFALQEGETSDVIKTEYGYQIVNA 359

Query: 271 AICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
              +         +KA + A     K +       +KL
Sbjct: 360 KKIEAATQRPFDEVKASIIATLQADKAQTEFYGLQQKL 397


>gi|333029339|ref|ZP_08457400.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacteroides
           coprosuis DSM 18011]
 gi|332739936|gb|EGJ70418.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacteroides
           coprosuis DSM 18011]
          Length = 462

 Score = 91.7 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/317 (11%), Positives = 102/317 (32%), Gaps = 20/317 (6%)

Query: 4   KVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK-RIAL 62
           K+   L+ +   L +  +L     +P   +    +   +   +  E+I   D+   R+  
Sbjct: 6   KMRNKLAIY---LRSAVLLCCLMALPKSVFAQNNVIDEVIWVVGDEIILKSDVESLRLQY 62

Query: 63  LKLQKI-NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
           L   K  +G    +  +++ ++ L   + +   I    + +      +            
Sbjct: 63  LIDGKKIDGNPYCVIPEQIAIQKLFLNQAKLDSIEVSESAIIRQVDMYMAEYLKMFNSKE 122

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWP---DVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
              +      +  ++ L           +V++  +        E+    Q +   ++   
Sbjct: 123 KMEEVMNKTTSQIRRDLRNSLREGETVKMVQDKLVGDIAVTPAEVRRFFQDLPQDSIPYI 182

Query: 179 LIR---TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC-NKLEKFASKI-HDVSIGK 233
             +    ++  +P   L     V+KR+++  +               ++  +   +  G+
Sbjct: 183 PTKVEVQIITQLPRVSLAEVDDVKKRLREYTDQVNSGEMPFSTLARLYSEDLGSAMKGGE 242

Query: 234 AQYLLESDLHPQFQN--LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ 291
             ++    L P++ N     +     +    T+ G   I + +KR   G+     ++   
Sbjct: 243 IGFMGRGMLAPEYANVAFNMQEPGKVSKIVETEFGYHIIQLVEKR---GDRVNTRHIL-- 297

Query: 292 NTPTKIEKHEAEYVKKL 308
             P   ++   +   KL
Sbjct: 298 LKPKVSDEDLTKSTNKL 314


>gi|149192497|ref|ZP_01870682.1| peptidyl-prolyl cis-trans isomerse D [Vibrio shilonii AK1]
 gi|148833670|gb|EDL50722.1| peptidyl-prolyl cis-trans isomerse D [Vibrio shilonii AK1]
          Length = 432

 Score = 91.7 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 96/396 (24%), Gaps = 91/396 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + SY +  + +     +    I  G+  +  
Sbjct: 1   MMERIREGVNSIAVKIILGLIILSFVFAGVGSYIAGGIGNT-AAKVGNVEIGRGEFEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +  +                    K  +  +I + L +Q  E  G+      +  
Sbjct: 60  QNERNRMQSQLGDYFSTLLGDPSYVASFRKSVLDRMINDVLLEQHAESLGLRISDAQIRQ 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQG---IGDNHFKQYLAIQSIWPDVVK------------ 149
             ++  +       D   +           + F +YL    +   ++             
Sbjct: 120 MILEMPQFQNDGKFDQDIYQATLRRAGFSADSFAEYLRRDLVRNQLLTALQGSEFTLPSE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRT------ 182
                                 DF  K    + EI    ++      R   ++       
Sbjct: 180 IELQSKLLTQTRDIKTLTLSLADFSKKAQITDEEIQKYYEENPGQFTRPEQVKVAYIELS 239

Query: 183 -------------VLFSIPDNKLQNQGFVQKRIKDAE--------------ESRLRLPKD 215
                         +    D  L      ++R                   +        
Sbjct: 240 AQALKDQVKVTDDEIQKYYDEHLDKYSTSEQREVSHILVQGDDEAKAQAILDELNAGADF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
               ++ +  I      G   ++    + P F+      K+  +TT    +  G   I +
Sbjct: 300 ATLAKEKSEDIGSSEEGGSLGWIERDVMDPAFEEAAFALKNVGDTTGLVKSDFGYHIIKL 359

Query: 273 CDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
              +    E    A +  +      ++   +    L
Sbjct: 360 DAIK--ASESKPLAEVKDEIIAELKDQVAVDEFYNL 393


>gi|149378497|ref|ZP_01896176.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter algicola
           DG893]
 gi|149357219|gb|EDM45762.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter algicola
           DG893]
          Length = 608

 Score = 91.7 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/394 (10%), Positives = 98/394 (24%), Gaps = 86/394 (21%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
              +  +    I  +    +++   I  + +            T+NGE IT+ +  + + 
Sbjct: 1   LQDIRENAQGTIAKIIIGLLIVSLSIWGMDAIVGGFSGEPEVATVNGEDITEREFLRVVQ 60

Query: 62  LLKLQK------------INGELEKIAVQ-----------------ELIVETLKKQEIEK 92
           +   ++               ++ +  +                  EL    +     + 
Sbjct: 61  IESQRRLSEMENPDPSLLDEDQVRQDVLDALIQQKVMTLNAEDQGLELSDADIDSLITQM 120

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND- 151
                D       FV   RN G+   +F   + KQ + +           +  + V    
Sbjct: 121 PQFQVDGTFNRDRFVSAVRNMGMGVAEFRETMRKQYVVNQIRAGISQSGVVTDENVAQLL 180

Query: 152 ------------------FMLKYGNLEMEIPANKQKMKNITVREYLI------------- 180
                                +    + ++ A   + K        +             
Sbjct: 181 RIQNQTRNFRVTTLSADAVSDQVEVTDADVEAYYDENKEAFKLPESVDASYIVLSLAALA 240

Query: 181 ---------------------RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
                                           +++    ++ +   +E            
Sbjct: 241 ETIEISDEQLRDYYEQRASELMREERRASHILIEDGENAEETMATIQERLAGGESFAALA 300

Query: 220 EKFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD 277
           E+F+   +     G   +       P F++ L    +   + P  T  GV  I + D + 
Sbjct: 301 EEFSVDTVSAEQGGDLGFAERGVYDPAFEDALFALEEGEVSEPVSTSFGVHLIKLEDVQK 360

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
              E    A L  Q      ++   E   ++RS 
Sbjct: 361 T--EAPPLAELEDQLRRELAQREATERFAEVRSE 392


>gi|331086426|ref|ZP_08335506.1| hypothetical protein HMPREF0987_01809 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406192|gb|EGG85715.1| hypothetical protein HMPREF0987_01809 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 246

 Score = 91.7 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/281 (10%), Positives = 77/281 (27%), Gaps = 46/281 (16%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKI----NGELEKIAVQELIVETLKKQEIEKS 93
           MS+ +   + G+ IT+ ++   +     ++     N +  +  +++LI   L  Q  E  
Sbjct: 1   MSNEVLAVVAGKEITNAELDAFLQNAPREQQAYVTNPQFRQQYLEQLISLHLFAQAGED- 59

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
                                            +   +       A + I   +   + +
Sbjct: 60  ------------------------------AKLEETEEFAKILENAKRDILAQLAMRETL 89

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                 + E+ A  ++ K    +   +      +   +              E       
Sbjct: 90  KDVTVTDEEVAAYYEENKQQFTKGETVSAKHILVDSEEKCTSVL--------ESITSGEK 141

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAI 272
              +  ++ ++       G      +  +  +F+     ++  +   P  TQ G   I +
Sbjct: 142 AFEDAAKEASTCPSGARGGDLGEFGKGQMVKEFEEAAFAAEIGHVVGPVKTQFGYHLIKV 201

Query: 273 CDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             K +        +K  +       K        V++L+  
Sbjct: 202 EKKNEASVAVFDEVKEAIKRNLIQQKQNAAYNAKVQELKEK 242


>gi|51595313|ref|YP_069504.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia
           pseudotuberculosis IP 32953]
 gi|153948580|ref|YP_001402048.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia
           pseudotuberculosis IP 31758]
 gi|170025447|ref|YP_001721952.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pseudotuberculosis
           YPIII]
 gi|186894330|ref|YP_001871442.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pseudotuberculosis
           PB1/+]
 gi|51588595|emb|CAH20203.1| peptidyl-prolyl cis-trans isomerase, for periplasmic folding of
           outer membrane proteins [Yersinia pseudotuberculosis IP
           32953]
 gi|152960075|gb|ABS47536.1| peptidyl-prolyl cis-trans isomerase [Yersinia pseudotuberculosis IP
           31758]
 gi|169751981|gb|ACA69499.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia
           pseudotuberculosis YPIII]
 gi|186697356|gb|ACC87985.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia
           pseudotuberculosis PB1/+]
          Length = 628

 Score = 91.7 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/399 (9%), Positives = 105/399 (26%), Gaps = 87/399 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + ++ +  +    +++ F +  + SY     +      +N + I+   + + +
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSNDY-AAKVNDQDISRAQLEQAM 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                    +L +  + +LI   L  Q   K G+T     V  
Sbjct: 60  QSERGRLQQKLGEQFSVLAANEGYMQQLRQQVLGQLINNVLLDQYARKLGLTVSDEQVKE 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY---LAIQSIWPDVVK------------ 149
              Q          D + +L          +Q+      Q I   ++K            
Sbjct: 120 SIRQIPDFQTGEHFDNNRYLALINQLGYTPEQFAQLQRQQLINQQLLKAFSDTGFVLPIE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                     +    + E+ A   + K+  +    ++    ++ 
Sbjct: 180 VQAMSALVLQQRDVRLATLDLKALQAEQKVTDEELQAYYDQNKHNFIAPEQMKVSFIAMD 239

Query: 189 DNKLQNQG-------------------------------FVQKRIKDAEESRLRLPKDCN 217
              +Q+                                   +   K A +   +      
Sbjct: 240 AAAMQSNITVTEEDIAAYYDQNRSSYTQPERRNYSVIQFKTEAEAKAALDELKKGADFAV 299

Query: 218 KLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
             ++ ++  I   + G+  +L       + +      +   ++   +  G   + + D +
Sbjct: 300 IAKEKSTDIISRNNGGELGWLEPETTPDEVKAANLSEKGQLSDVIKSSVGYLIVRLNDIK 359

Query: 277 D--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
              +     +   L+ +    K         +K+   A 
Sbjct: 360 PELVKPLSEVHDELAKKLKQEKALDAYYALQQKVNDAAT 398


>gi|325662683|ref|ZP_08151280.1| hypothetical protein HMPREF0490_02020 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471022|gb|EGC74249.1| hypothetical protein HMPREF0490_02020 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 246

 Score = 91.7 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/281 (10%), Positives = 77/281 (27%), Gaps = 46/281 (16%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKI----NGELEKIAVQELIVETLKKQEIEKS 93
           MS+ +   + G+ IT+ ++   +     ++     N +  +  +++LI   L  Q  E  
Sbjct: 1   MSNEVLAVVAGKEITNAELDAFLQNAPREQQAYVTNPQFRQQYLEQLISLHLFAQAGED- 59

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
                                            +   +       A + I   +   + +
Sbjct: 60  ------------------------------AKLEETEEFAKILENAKRDILAQLAMRETL 89

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                 + E+ A  ++ K    +   +      +   +              E       
Sbjct: 90  KDVTVTDEEVAAYYEENKQQFTKGETVSAKHILVDSEEKCTSVL--------ESITSGEK 141

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAI 272
              +  ++ ++       G      +  +  +F+     ++  +   P  TQ G   I +
Sbjct: 142 AFEDAAKEASTCPSGARGGDLGEFGKGQMVKEFEEAAFAAEIGHVVGPVKTQFGYHLIKV 201

Query: 273 CDKRDLGG--EIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             K +        +K  +       K        V++L+  
Sbjct: 202 EKKNEASVAAFDEVKEAIKRNLIQQKQNAAYNAKVQELKEK 242


>gi|237725280|ref|ZP_04555761.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D4]
 gi|265754206|ref|ZP_06089395.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_33FAA]
 gi|229436546|gb|EEO46623.1| peptidyl-prolyl cis-trans isomerase [Bacteroides dorei 5_1_36/D4]
 gi|263234915|gb|EEZ20470.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_33FAA]
          Length = 456

 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/316 (9%), Positives = 93/316 (29%), Gaps = 16/316 (5%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI--ALLKLQKINGEL 72
           + T  + L++     +  Y    +   +   +  E I   D+      A  + +K +G+ 
Sbjct: 5   MCTKVYALVLMLFAAVSVYGQDNVIDEVVWVVGDEAILKSDVENERLNAQYEGRKFDGDP 64

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
             I  ++L ++ L   +     I      +     +                +       
Sbjct: 65  YCIIPEQLAIQKLFLHQAAIDSIEVSEQEIISDVERRTNWLIDQIGSKEKVEEYYNKTST 124

Query: 133 HFKQYLAIQSIWPDV---VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
             ++ L            ++   +        E+    + +   ++     +  +  I  
Sbjct: 125 QIREMLRENIRDGKTVQKMQQQIVGDIKITPAEVRRYFKDLPQDSIPFIPTQVEVQIITM 184

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS-----IGKAQYLLESDLHP 244
                Q  +++  K   +   R+          A    +        G+  ++  ++L P
Sbjct: 185 EPKIPQEEIERVKKTLRDYTERVTSGEIAFSTLARLYSEDEGSRRRGGELGFMGRAELVP 244

Query: 245 QFQN--LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNT-PTKIEKHE 301
           ++ N     +  N  +    ++ G   I + +KR   G+     ++  +     K  +  
Sbjct: 245 EYANVAFNLQDPNKVSKIVESEFGFHIIQLIEKR---GDRINTRHILLKPKVDEKDLEAA 301

Query: 302 AEYVKKLRSNAIIHYY 317
              +  + ++     +
Sbjct: 302 LLRLDSIANDIRNEKF 317


>gi|206560348|ref|YP_002231112.1| putative exported isomerase [Burkholderia cenocepacia J2315]
 gi|198036389|emb|CAR52285.1| putative exported isomerase [Burkholderia cenocepacia J2315]
          Length = 260

 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 82/278 (29%), Gaps = 47/278 (16%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKING--ELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I        +A L  Q      +L++   QEL+   +  QE  + GI    +
Sbjct: 25  IAVVNGTPIPKSRADAMVAQLVQQGQTDGPQLQQAVRQELVNREILMQEAIREGIPNRPD 84

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q++    +   F+ K    +
Sbjct: 85  VKAQV-------------------------------AVAQQTVVLRSMIEGFLKKNQPTD 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+ A   ++                + + +       + +            K  +  +
Sbjct: 114 AEVKARYDELVKGVGGNREYHLHHILVDNEQQAKDLIAKIK---------GGAKFEDLAK 164

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAICDKRD 277
           +++       + G   +       P+F    +K  +   T+ P  TQ G   I + D RD
Sbjct: 165 QYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDTPVKTQFGWHIIRVDDIRD 224

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +         + AQ     +++    + + LR  A I 
Sbjct: 225 IAP--PPFDQVKAQIAQQLVQQKLQAFEEGLRQQAKIQ 260


>gi|319406090|emb|CBI79720.1| peptidyl-prolyl cis-trans isomerase [Bartonella sp. AR 15-3]
          Length = 317

 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/286 (11%), Positives = 73/286 (25%), Gaps = 48/286 (16%)

Query: 36  WAMSSRIRTTINGEVITDGDISK---RIALLKLQKINGELEKIAVQELIVETLKKQEIEK 92
               S +   I+G+ IT G + +    I    ++  + +     ++  +      +   +
Sbjct: 45  PVSLSHVIAVIDGKNITAGQLDELALEINPNLVRVPDEQRRVTVLKAYLDMQALAKAALQ 104

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
            G+                                          +    +     K   
Sbjct: 105 KGVDKTEAYDKR------------------------------MAIMRDNILQQLYFKEMV 134

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
           + K  + +++   NK+        E   R +L              ++  +   +   + 
Sbjct: 135 VDKIADADVKALYNKEIAALPKEDEIKARHIL-----------VKTKEEAEKIIKRLNKG 183

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT-NPYVTQKGVEYI 270
            K     +K ++       G   Y     +   F+           T  P  +  G   I
Sbjct: 184 EKFEEIAKKDSTDGSSAVGGDLGYFSRGQMVKSFEEAAFNLKVGEYTKKPIESPFGWHVI 243

Query: 271 AICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            I D+R       +   +        I +     +  LRS   + Y
Sbjct: 244 KIEDRRLKQP--PVFDDVKEVLRTQLIRERYQTLITDLRSKVNVEY 287


>gi|119476198|ref|ZP_01616550.1| peptidyl-prolyl cis-trans isomerase D, putative [marine gamma
           proteobacterium HTCC2143]
 gi|119450825|gb|EAW32059.1| peptidyl-prolyl cis-trans isomerase D, putative [marine gamma
           proteobacterium HTCC2143]
          Length = 640

 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/404 (9%), Positives = 102/404 (25%), Gaps = 92/404 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK-- 58
           M   +  +    I       +++ F +  I S       + +   +NG+ I+  ++ +  
Sbjct: 15  MLQNIRENSQGLIAKFIIGLIILTFALFGIDSLVGNNGPA-VVAAVNGDEISLAELEQGV 73

Query: 59  ------RIALLKLQKINGELEKI-----AVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
                  +  +        L+        +  LI + L  Q    + +      ++   +
Sbjct: 74  SLERRRLLNYMGENADPSLLDDQRLRGPVLDRLIQQKLLLQAAADASVGVSDAALDQTII 133

Query: 108 QHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV---------------- 148
              +       S E + S L   G     +KQ ++       +                 
Sbjct: 134 AMEQFQEDGKFSPERYQSILRGSGYSTAFYKQLMSQDLTVAQLNSGISGSDFVISNELSE 193

Query: 149 -----------------KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV-------- 183
                            +     +    E EI  +     +    E  +           
Sbjct: 194 VSKIVGQQRSFRYFILPREKVAAQVIISEEEIQQHYNDNIDKYQSEEQVMLEYVEVKTAD 253

Query: 184 ---------LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGK- 233
                    +      ++      ++R        +   +D ++  + A ++ +   G  
Sbjct: 254 FFKPVEADDIEREYALEIAAFEADEERRVSHILIEITDDRDASEARQLAEQLAEKLTGDT 313

Query: 234 ---------------------AQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIA 271
                                  + +     P+F+  L +   +  + P  T  G   + 
Sbjct: 314 DFATIAREFSEDPGSSSDAGDLGFTMGDTFPPEFEAALFELALDQISEPIQTDAGYHLLK 373

Query: 272 ICDKRDLGGEIALKA--YLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             + R +      +    +  +      E      V+ LR  A 
Sbjct: 374 ATEIRGVSPAPFSERGSVIEGRLQQAAAEAEFVNAVEDLRDLAF 417


>gi|312876097|ref|ZP_07736085.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311797083|gb|EFR13424.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 335

 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/318 (11%), Positives = 94/318 (29%), Gaps = 20/318 (6%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIAL--- 62
               +  +       VL+I  I        +   +R    +NGE IT  + +        
Sbjct: 1   MDKRTKIVLFSIAAVVLLIILIAVTPEIVRYVDENRAVAIVNGEKITKKEFAINYKSQIN 60

Query: 63  ------------LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
                       +  +    ++++  +  LI+  ++ Q+  K  IT  S        Q  
Sbjct: 61  YYGLDKAFLSQKVGDKTYEQQIKENVLDGLIIRQIELQQARKRNITLSSAEKKAIDQQIE 120

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
           +    S         +        +     Q I   +V   +     N +      +   
Sbjct: 121 QYKSDSQSGTEF--KQYLQTIGATENEYKDQVIKSQIVSKLYDEVTKNQKASDAEIESYY 178

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDV 229
            +       ++        N  + +   +K+ ++  +            +K++       
Sbjct: 179 NSHKSDFVEVKASHILFKVNDSKEEAAKKKKAEEILQMIKDGQNFEKLAQKYSEDETTKQ 238

Query: 230 SIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
             G   Y  +  +  +F++     +    ++   T  G   I + D++ L     +K  +
Sbjct: 239 KGGDLGYFRKGQMVKEFEDAAFSLNIGEISSIVKTSYGFHIIKVTDRKQLLL-SDVKDEI 297

Query: 289 SAQNTPTKIEKHEAEYVK 306
            +     K +++    ++
Sbjct: 298 KSTIESQKKDEYYQSLLE 315


>gi|226940618|ref|YP_002795692.1| signal peptide protein [Laribacter hongkongensis HLHK9]
 gi|226715545|gb|ACO74683.1| Probable signal peptide protein [Laribacter hongkongensis HLHK9]
          Length = 263

 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/298 (10%), Positives = 74/298 (24%), Gaps = 52/298 (17%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ-----KINGELEKIAVQELI 81
            +      +    +     +NG  I   ++   ++ +        K   EL     Q+LI
Sbjct: 9   ALTFALATAGIAQAAPVAVVNGTAIQQNELDSAVSAIVRSGGGRIKDTPELRNEVKQQLI 68

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
              +  QE  + G+   S                                      +   
Sbjct: 69  NRQVILQESARRGLDKTSQFK------------------------------ERMDAVRDD 98

Query: 142 SIWPDVVKNDFMLK-YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
            +   ++ +        + ++    +K K      +E   R ++             ++K
Sbjct: 99  LLQQALIDDLAKQNPVSDAQVRAEYDKLKSALSGQKEVQARQIIVGSEAEANAVIAQLKK 158

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHD-VSIGKAQYLLESDLHPQFQNLLKKS-QNNTT 258
                              ++ +       + G   +     +     + LK   +   T
Sbjct: 159 -----------GGNFEAIAKQKSKDPAAKQNGGDMGWGNLGVMAKPLADTLKPLGKGQYT 207

Query: 259 N-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             P+ +  G     + + RD          +  Q +         + +  LR  A I 
Sbjct: 208 QQPFKSDLGWHIFKVENVRDAKV--PQFDEVKPQLSRQMQGAAVEKALNDLRGKAKIQ 263


>gi|331092188|ref|ZP_08341018.1| hypothetical protein HMPREF9477_01661 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401960|gb|EGG81534.1| hypothetical protein HMPREF9477_01661 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 246

 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/281 (9%), Positives = 72/281 (25%), Gaps = 46/281 (16%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKIN----GELEKIAVQELIVETLKKQEIEKS 93
           MS ++  T+ G+ IT+ ++   +  +  ++       +     +++LI            
Sbjct: 1   MSEKVLATVAGQPITEEELQAFLNNVPREQQPYINNPQFRDQCLEQLIS----------- 49

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
                                         +  +   +       A + I   +   + M
Sbjct: 50  --------------------LHLFAQMGEEMKLEETEEFQQILKNAKKDILAQLAMRETM 89

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                 + E+ A          +   +                  +K     E       
Sbjct: 90  KGVEVSDEEVKAYYDANSQQFKKGATVSAKHILTDSE--------EKCQTILESILNGEK 141

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAI 272
              +  ++F++       G         +  +F+++  +        P  TQ G   I +
Sbjct: 142 TFEDSAKEFSTCPSGTRGGDLGQFGRGQMVKEFEDVAFEAEIGEVKGPVKTQFGYHLIKV 201

Query: 273 CDKRDLGG--EIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            ++ +        +K  +       K      E V  L+  
Sbjct: 202 ENRTEESVAAFDEVKETIRRSLVQQKQNAKYMEQVNVLKEK 242


>gi|18311465|ref|NP_563399.1| peptidylprolyl isomerase [Clostridium perfringens str. 13]
 gi|46396974|sp|Q8XHK0|PRSA_CLOPE RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|18146149|dbj|BAB82189.1| probable protein export protein [Clostridium perfringens str. 13]
          Length = 342

 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/331 (11%), Positives = 91/331 (27%), Gaps = 20/331 (6%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
             S+   +       ++       +V     A+      T+NGE IT G++   +  +  
Sbjct: 1   MVSVKKIVASALVGVLMFSAVGCNMVEKTQAAIDKTTVATVNGEKITLGEVDSHLKGVFA 60

Query: 66  QKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
           Q  +                 +  +  VQ L+ + +   E +K GI      +     + 
Sbjct: 61  QMKSQYGDKYMDDPQVAQQILQQRQSVVQGLVTDKVLGIEADKLGIKPSEEEIKKKVDEQ 120

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
             N      D      +         + +    +    V++  +      + +      +
Sbjct: 121 FENIKKGMGDNFDKALEAEGYTEDTFKDVIKNQVINQAVQDYIIKDVKVTDEDAQKYYDE 180

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
            K   V +         + +N+ + Q    +             K  N   +   K    
Sbjct: 181 NKQQFVAKDSGVLTKHLLFENEEEAQKAYDEIQSGKTTFNDLFTKYQNNKSEN-KKPIAE 239

Query: 230 SIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAI---CDKRDLGGEIALKA 286
           ++G         +      L    +   + P  TQ G   I      +K        +K+
Sbjct: 240 NLGVVPAENSGLVQEFVDGLKPLKEGEISKPIKTQFGYHIIQAGATYEKGAQLPFDEVKS 299

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            +       K  +     + + + +  +  Y
Sbjct: 300 QIIQILKQQKDSEKFKADMDQWKKDLNVKVY 330


>gi|34498388|ref|NP_902603.1| signal peptide protein [Chromobacterium violaceum ATCC 12472]
 gi|34104242|gb|AAQ60601.1| probable signal peptide protein [Chromobacterium violaceum ATCC
           12472]
          Length = 260

 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/305 (11%), Positives = 84/305 (27%), Gaps = 51/305 (16%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ--KINGELE 73
           +    +          S  + A  S     +NG+ I+D  +   + +++ Q   +N +  
Sbjct: 1   MRKILLQTALVAAFAGSAIAVAGPS-----VNGQPISDARVDAVVKMMEAQGQNVNPQAR 55

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
                +L+   + +QE  K G+              A                       
Sbjct: 56  DQIKDQLVTAEVLRQEAVKKGLDKSPEFNAELQNMQA----------------------- 92

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                   ++   ++  D+       E ++ A   K+                +      
Sbjct: 93  -------MALANRLI-KDYEKANPLSEADLKAEYDKLAASVPETKQFHARHILVKSEAEA 144

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLK 251
                        ++  +        ++ +       + G   +         F + + K
Sbjct: 145 KSV---------IDALKKGKSFDKLAKEKSQDPGSKANGGDLGWQEAGTFVAPFSEAMSK 195

Query: 252 KSQNNTT-NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
            ++   T  P  T+ G   I + D R     +     +  Q T   +     +YV +L++
Sbjct: 196 LAKGEVTAKPVKTEYGWHVIKLDDVRTQRN-VPQLEEIRPQLTQRVMGARIEKYVAELKA 254

Query: 311 NAIIH 315
            A I 
Sbjct: 255 KAQIQ 259


>gi|319408175|emb|CBI81828.1| peptidyl-prolyl cis-trans isomerase [Bartonella schoenbuchensis R1]
          Length = 316

 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/287 (10%), Positives = 72/287 (25%), Gaps = 42/287 (14%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIE 91
           +       S +   ING+ IT G++ +                              EI 
Sbjct: 41  ASAKPIAPSHVMAIINGKSITAGELDE---------------------------LALEIN 73

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
            +             ++   +    A+        +    +     +    +     K  
Sbjct: 74  PNLARLSDEQRRITVLKAYLDMQAFAKAAIEKGIDKTEVYDKRMAIMRDNVLQQLYFKQM 133

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
            + K  + +++   +K+        E   R +L              ++  +   +   +
Sbjct: 134 VVDKIQDADLQALYDKEVAALPKEDEVKARHIL-----------VKTKEAAEAIIKRLKK 182

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEY 269
                   +K ++       G   Y     +   F++          T  P  +  G   
Sbjct: 183 GESFEEIAKKDSTDGSASVGGDLGYFSYGQMVKPFEDAAFSLKVGEYTKKPVESPFGWHI 242

Query: 270 IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           I + D+R           +        ++      +  LR+   + Y
Sbjct: 243 IKVEDRRPKQP--PAFDDVKEVLRTQIMKDRYHALIIDLRNKVDVKY 287


>gi|116620335|ref|YP_822491.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116223497|gb|ABJ82206.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 327

 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/315 (12%), Positives = 93/315 (29%), Gaps = 16/315 (5%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING 70
            F  ++    + +    VP+++ ++      + T  +G  +   +++   A L   ++  
Sbjct: 2   RFPSVVFLAALSVSAIGVPVMAQEAPKAQPPVMTRPDGATVPL-EVTPPPAPLPPNRVIL 60

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
           ++ +IA+    +E + +   E   +  +      F  Q  R   LS E     LD+    
Sbjct: 61  QVGEIALTAGQLEQILEAYSEAQRVYVNGPGRPQFIQQLIRVLMLSQEGKRRKLDETDRY 120

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
            N      A         + D   K    +  +    +      ++      ++ +   +
Sbjct: 121 RNQLTYSAAGILSNHT--EEDIRKKIKIDDAMLEDYLKAHPLDYMQVRARHILIRTPGSS 178

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI--------HDVSIGKAQYLLESDL 242
                G  +    +A      L         FA            +   G   +     +
Sbjct: 179 LPLEPGQKELTDAEALTKAQELRAKIVAGADFADVAKIESNDISTNTKGGDLGFFKRGQM 238

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE 301
            P  +           + P  T  G   I + + + +     L+  L          +  
Sbjct: 239 APSIEEAAFALKPGEISQPVKTSMGYTVIKVEEIKPVKSFEELRPDLERNLRN----ELT 294

Query: 302 AEYVKKLRSNAIIHY 316
            +YV  L++   I  
Sbjct: 295 RKYVDDLKALTKIEI 309


>gi|114799826|ref|YP_761850.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Hyphomonas neptunium ATCC 15444]
 gi|114740000|gb|ABI78125.1| PPIC-type PPIASE domain protein [Hyphomonas neptunium ATCC 15444]
          Length = 303

 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/313 (9%), Positives = 91/313 (29%), Gaps = 55/313 (17%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSS------RIRTTINGEVITDGDISKRIALLKL---- 65
            T +  ++    +   S + + +         +  T+NGE I   D+        L    
Sbjct: 8   FTAFCAVMAALTLAGCSQEGFQLEEPREVSREVAATVNGEAIYTADVEVEAVARGLVVSG 67

Query: 66  --QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
              +   E  K  + +LI + L  QE ++ G+  D   +    +                
Sbjct: 68  ASLRAEDEAYKQVLDQLIDQKLMAQEAKRLGLEKDPAGMRRLEMAQ-------------- 113

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                            + +   +V++    +  +  ++    +Q        E  +  +
Sbjct: 114 ----------------ERIMGNLLVESVVAEQVTDEMIDRMYAEQVRLQQVNDEVSVAHI 157

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
           +         +     + +    ++              +     +  G   ++  +DL 
Sbjct: 158 VT--------DTEEEAEAVWLRVQAGEAFESLVFNHSNDS--ATRMENGDLGFVSPNDLP 207

Query: 244 PQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEA 302
             +  ++  +       P+  +     + + D+R    +   +  +  +          +
Sbjct: 208 DPYPVVIANTPVGEVAPPFEAEGSWRIVKVKDRRTEPPKT--RDEMRPEIATFLTLSEVS 265

Query: 303 EYVKKLRSNAIIH 315
             +++LR+ A I 
Sbjct: 266 RILRRLRTEARIE 278


>gi|119774365|ref|YP_927105.1| peptidyl-prolyl cis-trans isomerase D [Shewanella amazonensis SB2B]
 gi|119766865|gb|ABL99435.1| peptidyl-prolyl cis-trans isomerase D [Shewanella amazonensis SB2B]
          Length = 615

 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/403 (10%), Positives = 97/403 (24%), Gaps = 95/403 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+       I       V++ F    + SY   +       T+NGE I    + +  
Sbjct: 1   MLEKIREGAQGTIAKSILVLVILSFAFTGVSSYLGSSTE-PAAATVNGEEIPVSALEQAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              K +                     + +  ++ +I + L  Q   + G+      +  
Sbjct: 60  QNEKARMEQQLGEMFQTLAADDNYLRSIRQGVLERMIADKLLDQTASEMGLRISDEQIKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK------ 155
             ++            E + + L + G   N F+  + +      +V      +      
Sbjct: 120 AIMEEPAFQTEGKFDNERYLAILRQLGYQTNSFRDMMRVDMTRRQLVNALIGSEFVLPSE 179

Query: 156 ---------------------------YGNLEMEIPANKQKMKNITVREYLIRTVL---- 184
                                          + E  +      +  ++   +        
Sbjct: 180 SKAVAELQGQTRDLRYLVVESQPFEAGITVADDEAKSFYDANPDQFIKPEQVSLEYLTLS 239

Query: 185 ---------------FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA------ 223
                           +  D  +      +KR+       L   +   K +  A      
Sbjct: 240 AKSLADEVSVTDEQAKAYYDEHMSQYKTPEKRLAAHILVNLGDDEAAAKTKADAIYAKLQ 299

Query: 224 --------------SKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVE 268
                                 G+  +  +  + P F + L    ++  +    T  G  
Sbjct: 300 AGADFAELAKTDSEDTFSGELGGQLDWFEQGVMDPAFDEALFGLEKDQYSAVVKTDYGFH 359

Query: 269 YIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            I + D    GG  A    +  +      EK   +    L+  
Sbjct: 360 IIKLLDV--QGGAQASFDEVKDRIFAQIKEKDALDKFYSLQQK 400


>gi|310766848|gb|ADP11798.1| putative protease maturation protein [Erwinia sp. Ejp617]
          Length = 623

 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/396 (7%), Positives = 105/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + +  +  +    +++ F +  +  Y +          +NG+ I    + +  
Sbjct: 1   MMDNLRAASNHVVLKVILGLIILSFILTGVGGYLTGGSGDY-AAKVNGQEIGRAQLERAF 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           +  + ++                   ++ + A+ +LI E L  Q  ++ G+    + +  
Sbjct: 60  SSERARQQQMLGEQFSVLAGNEGYMQQMRQQALSQLIDEMLLTQYAKEIGLAIGDDQIKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             + S ++  G   + + + L  Q     ++             
Sbjct: 120 AIFTQPAFQTDGKFDNAKYLSIINNMGFTADQYAEALRKQLTTQQLIGSVTGTDFVLGNE 179

Query: 149 ---------KNDFMLKY-----------GNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               + EI    Q+ ++  +     R     + 
Sbjct: 180 TDSLAALVAQQRLVREVTINVNAMAAKQNVTQEEIANYYQQHQSSLMSPEQFRVSYIKMD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
            + +Q            ++                             +  +        
Sbjct: 240 ASAMQQPVSESDIQSWYQQHQDDYTQPQRNRYSIIQTKTEAEARSVLDALKKGGSFAKLA 299

Query: 220 EKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++      + G   +L       + +N   K +   ++   +  G     + D +  
Sbjct: 300 KEKSADPISARNGGDMGWLEPETTPDELKNAALKEKGQLSDVITSSVGFIVARLDDTQPE 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    +   ++ +    K      +  +K+   A
Sbjct: 360 KVKALSEVHDEIARKLKQEKAVVAFYKLQQKVSDAA 395


>gi|152980669|ref|YP_001353234.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Janthinobacterium
           sp. Marseille]
 gi|151280746|gb|ABR89156.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Janthinobacterium
           sp. Marseille]
          Length = 259

 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/308 (12%), Positives = 86/308 (27%), Gaps = 54/308 (17%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVI--TDGDISKRIALLKLQKING 70
           + L   + +  +     + +             +NG+ I  +  D+  +    + Q+   
Sbjct: 1   MTLKPAHLLAALIVSASLPAMAQN------LAVVNGKPIPSSRADVMIKQMTSQGQQDTP 54

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
           EL  +   ELI   +  QE +K G+   ++  N                           
Sbjct: 55  ELRAMVKDELINREILIQEADKLGLGAQADVKNQI------------------------- 89

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                +      +   +V +                 +     + +EY  R +L      
Sbjct: 90  -----EIARQSILIRALVADYLKKNPVKDADIKAEYDRFKAQASDKEYHARHIL------ 138

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL 249
                   +   K          K  +  +  +       + G   +   +     F + 
Sbjct: 139 -----VEKEDEAKAIIAKLKGGAKFEDLAKASSKDPGSAANGGDLDWASPASFVKPFSDA 193

Query: 250 LKK-SQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
           +    +   +  P  TQ G   I + D R    +I     +  Q   +  +K    + ++
Sbjct: 194 MVALQKGQLSETPVKTQFGYHVIKLDDVR--TAKIPTLEEVKPQIAESLQQKKLQAFQQQ 251

Query: 308 LRSNAIIH 315
           LRS A I 
Sbjct: 252 LRSKAKIQ 259


>gi|92114164|ref|YP_574092.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chromohalobacter
           salexigens DSM 3043]
 gi|91797254|gb|ABE59393.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chromohalobacter
           salexigens DSM 3043]
          Length = 602

 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/394 (10%), Positives = 99/394 (25%), Gaps = 82/394 (20%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKS-WAMSSRIRTTINGEVITDGDISKR 59
           M  ++      ++  +    +++ F +    S    +   S    T+NGE I    +  +
Sbjct: 1   MLQRIREGSQGWVAKMIVGAIIVTFALFGAESLVGVFTSGSDDIATVNGEPIKRQAVELQ 60

Query: 60  IAL-----LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF----VQHA 110
           +           +   EL    + ++I   L  Q  E+ G+      ++           
Sbjct: 61  VQRGIRSGQVPPEQERELRAQVIDQMITTELLDQYAEEGGMHLSDAQIDQLIVSRPEFQD 120

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN-------------------- 150
                S E FS+ L   G     F++ L        + +                     
Sbjct: 121 SEGNFSQELFSNRLASAGYTPLSFRRELRRDMKRQQLQQGVALSTFVLPGEAERLQALQN 180

Query: 151 ---------------DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD------ 189
                          +  ++    +M+      + +     +  +  V+ +  D      
Sbjct: 181 QTRDFRYASLTADDLEAPVEVTESDMQAYYEAHQDQYQRPEQVKVAYVVLNQQDVAQDVD 240

Query: 190 ------------NKLQNQGFVQKRIKDAEESRLRLPKDC------------NKLEKFASK 225
                        +      V   + D  + R R                       A++
Sbjct: 241 VDEQQLRDAYAAEREDAPREVAHVMVDYGDERSRDEAMARIEEAQGQLAEGADFADVAAE 300

Query: 226 IH-----DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG 279
                      G    +        F +      +   ++   +  G+  I + D  D+ 
Sbjct: 301 YSDDATTANKGGNLGVINRGFFGDAFDDAAFSLDEGQVSSVVDSGDGLHLIKVTDI-DMP 359

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                +  L+ Q           E  ++L   + 
Sbjct: 360 SFDEQRDELAEQVRLDNSRDAFNERAQQLEDRSY 393


>gi|164688476|ref|ZP_02212504.1| hypothetical protein CLOBAR_02121 [Clostridium bartlettii DSM
           16795]
 gi|164602889|gb|EDQ96354.1| hypothetical protein CLOBAR_02121 [Clostridium bartlettii DSM
           16795]
          Length = 250

 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/281 (11%), Positives = 71/281 (25%), Gaps = 46/281 (16%)

Query: 38  MSSRIRTTINGEVITDGDISKRIA----LLKLQKINGELEKIAVQELIVETLKKQEIEKS 93
           M  +I   +  + I++ DI   I         Q    E  K  +++L+ + L     + +
Sbjct: 1   MEKKILAKVGDKEISNIDIDNAIQGLDPYQAQQFQTEEGRKYVLEDLVNQELLYMYAKDN 60

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
            I  D                                            +    V N  +
Sbjct: 61  KIDEDEAFKKEMAEIEKN-------------------------------VLKQYVINQIL 89

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                 + E  A  +  K               +   +  N+   Q +  D         
Sbjct: 90  TSVKLTDEEKQAFYEANKTNFSNPETANAKHILVDSEEKANEILAQIKAGDV-------- 141

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAI 272
              +     ++       G         + P+F+      +  + + P  TQ G   I +
Sbjct: 142 TFEDAARANSTCPSKDQGGDLGTFGRGQMVPEFEEATFAMNVGDVSEPVKTQFGYHLIKL 201

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             K +  +     +   +       K  +     + ++++ 
Sbjct: 202 EAKNEPSIPAYEEIADKVEKTLMFQKQGEVYKNKLDEVKAK 242


>gi|212690536|ref|ZP_03298664.1| hypothetical protein BACDOR_00018 [Bacteroides dorei DSM 17855]
 gi|237708008|ref|ZP_04538489.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 9_1_42FAA]
 gi|212666885|gb|EEB27457.1| hypothetical protein BACDOR_00018 [Bacteroides dorei DSM 17855]
 gi|229457994|gb|EEO63715.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 9_1_42FAA]
          Length = 456

 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/316 (9%), Positives = 93/316 (29%), Gaps = 16/316 (5%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI--ALLKLQKINGEL 72
           + T  + L++     +  Y    +   +   +  E I   D+      A  + +K +G+ 
Sbjct: 5   MCTKVYALVLMLFAAVSVYGQDNVIDEVVWVVGDEAILKSDVENERLNAQYEGRKFDGDP 64

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
             I  ++L ++ L   +     I      +     +                +       
Sbjct: 65  YCIIPEQLAIQKLFLHQAAIDSIEVSEQEIISDVERRTNWLIDQIGSKEKVEEYYNKTST 124

Query: 133 HFKQYLAIQSIWPDV---VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
             ++ L            ++   +        E+    + +   ++     +  +  I  
Sbjct: 125 QIREMLRENIRDGKTVQKMQQQIVGDIKITPAEVRRYFKDLPQDSIPFIPTQVEVQIITM 184

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS-----IGKAQYLLESDLHP 244
                Q  +++  K   +   R+          A    +        G+  ++  ++L P
Sbjct: 185 EPKIPQEEIERVKKTLRDYTERVTSGEIAFSTLARLYSEDEGSRRRGGELGFMGRAELVP 244

Query: 245 QFQN--LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNT-PTKIEKHE 301
           ++ N     +  N  +    ++ G   I + +KR   G+     ++  +     K  +  
Sbjct: 245 EYANVAFNLQDPNKVSKIVESEFGFHIIQLIEKR---GDRINTRHILLKPKVDEKDLEAA 301

Query: 302 AEYVKKLRSNAIIHYY 317
              +  + ++     +
Sbjct: 302 LLRLDSIANDIRNEKF 317


>gi|325981462|ref|YP_004293864.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas sp.
           AL212]
 gi|325530981|gb|ADZ25702.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas sp.
           AL212]
          Length = 264

 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/304 (13%), Positives = 92/304 (30%), Gaps = 46/304 (15%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDG--DISKRIALLKLQKINGELE 73
           L  +  ++I  +  ++++   A SS +   +NG  I     ++  +  + + Q+   E+ 
Sbjct: 3   LKKFSQVMIISVWGLIAFSVQAQSSGVVAKVNGVAIPQSRLELMVKANVAQGQQDGPEMR 62

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           K   + LI E +  QE  K  +  D   +                               
Sbjct: 63  KALRENLIAEEILAQEATKKRLDQDPEVIAQL---------------------------- 94

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
               +A Q++     + D++      +  +      ++     +      +    +N+ +
Sbjct: 95  ---EIARQAVLVRAFQADYIKHNQVSDDTLRKEYDVLRVQMGDKEYKARHILVENENEAR 151

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL--LK 251
           +     K+  +  +            EK        + G+  +   +     F       
Sbjct: 152 DIIASLKKGGNFAKIAE---------EKSIDDGSKENGGELNWSPPAAYVRPFSEALVKL 202

Query: 252 KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
                T  P  T  G   I + D R +         +        +++  A  V+ LRS 
Sbjct: 203 SKGGMTEQPVQTSFGWHVIQLMDIRPMEV--PPFEEVKQNIQQRVLQREFATVVQDLRSK 260

Query: 312 AIIH 315
           A + 
Sbjct: 261 AKVE 264


>gi|289548356|ref|YP_003473344.1| SurA domain protein [Thermocrinis albus DSM 14484]
 gi|289181973|gb|ADC89217.1| SurA domain protein [Thermocrinis albus DSM 14484]
          Length = 283

 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 101/302 (33%), Gaps = 26/302 (8%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +      +++   +   S+    +  R+  ++NGE I + ++     LL          K
Sbjct: 6   IAKLSCGVLLLTALSFWSF-GLTLLDRVVASVNGEPILESEV-----LLGKLFFGSNDRK 59

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             + +L+ + L  Q  +  G+      V+    Q  +   L+ E  +  L K G+     
Sbjct: 60  KVLDKLVEDMLLYQYAQSKGMGVPDQMVDAAVNQILQANNLTMEGLAKELSKDGLSLEDL 119

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
           K +L  + +    +    + +    ++++   K K   I V+  +    +          
Sbjct: 120 KNFLRREILATQGITALLLRETKVQDIDVELEKLKRGMIKVKREISVLTVD--------- 170

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ 254
               + + K   E   +             +   +       + + DL       +  + 
Sbjct: 171 ----KAKGKKLLELTEKGLDLDKVARDLGLQPERL------LVSKGDLVEPLDREVWAAP 220

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             +T     +  +    I   ++       +  L  Q    K+E+   E +KKLRS A+I
Sbjct: 221 VGSTVVAEDKDHIYLAKILGVKEETS-SVNEEELREQILRRKLEEKREELLKKLRSTAVI 279

Query: 315 HY 316
            Y
Sbjct: 280 RY 281


>gi|293413696|ref|ZP_06656345.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli B185]
 gi|291433754|gb|EFF06727.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli B185]
          Length = 623

 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/396 (9%), Positives = 103/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEK------------ 92
              + +                     L +  +  LI E L  Q   +            
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 93  -----SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN--------HFKQYLA 139
                     D    N  +       G++A+ ++  L  Q              F     
Sbjct: 120 AIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 140 IQSIWPDVVKNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
              +   V +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQDQFTQPQRARYSIIQTKTEDEAKAVLDELNKGGDFAALA 299

Query: 220 EKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++ I    + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATIPDELKNAGLKQKGQLSGVIKSSVGFLIVRLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|159185780|ref|NP_357092.2| peptidyl-prolyl cis-trans isomerase [Agrobacterium tumefaciens str.
           C58]
 gi|159140914|gb|AAK89877.2| peptidyl-prolyl cis-trans isomerase [Agrobacterium tumefaciens str.
           C58]
          Length = 288

 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/302 (9%), Positives = 80/302 (26%), Gaps = 48/302 (15%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL---KLQKINGELEKIA 76
               +      +   ++A   ++   +    I   ++   +  L     Q  + + +  A
Sbjct: 7   IAAAVIVATLGLQLPAFAQEDKVVAKVGDLEIHQSELDLAMGNLDPQLAQLPDEQKKVAA 66

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           +   I   L  +  +  G+    +                                   +
Sbjct: 67  LSGAIDVKLLVKNADAEGLEKTEDFKKR------------------------------ME 96

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
           ++  + +     +   +    N E++   +K+        E     +L            
Sbjct: 97  FIKDRELHNAYFRKHVVDAVTNDEVKARYDKEVAALPQEEEIKAAHIL-----------V 145

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             +   KD  +            ++ ++  +    G   +  +  + P+F+      +  
Sbjct: 146 ASEDEAKDIIKQLDSGKDFAALAKEKSTDSNKDDGGDLGWFGKGRMVPEFEEAAFGLEKG 205

Query: 257 TT--NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                P  TQ G   I + DKR           +  Q     +       ++K +++  I
Sbjct: 206 AYTKTPVKTQFGFHVIKLEDKRIAPP--PAFEQVEPQVRQLVMRDKYVALIEKAKADQKI 263

Query: 315 HY 316
             
Sbjct: 264 EI 265


>gi|78776717|ref|YP_393032.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurimonas
           denitrificans DSM 1251]
 gi|78497257|gb|ABB43797.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurimonas
           denitrificans DSM 1251]
          Length = 277

 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 89/301 (29%), Gaps = 41/301 (13%)

Query: 26  CIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK-------INGELEKIAVQ 78
            +  +    + ++S++   ++NG  IT  D+ K +      +          E  K  ++
Sbjct: 7   LVSSLALLSAISLSAQTLVSVNGTEITQQDVDKELMAATQGRFNQVPAEKQAEFRKQVLE 66

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
           +L+ + L   + +K+G+         +                                 
Sbjct: 67  QLVAKELVYDDAKKTGVLTSPEYKEKY---------------------------EEVTQR 99

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
             + I   V +   + K      E+       K   V    +      +           
Sbjct: 100 IQKEIAIQVWQKREIDKIAISNDELKKYYDANKEEFVENESVNARHILVEKESDAKNIIA 159

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKKSQNN 256
           + +    +  + +        +  ++       G   Y     + P+F  +    K++  
Sbjct: 160 ELKPLKGDALKNKF---MELAKSKSTCASAAEGGDLGYFTAGQMVPEFNDKAFSMKAKEM 216

Query: 257 TTNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           T  P  TQ G   I I DK  +       +K+++  +    K +      +K+L   A I
Sbjct: 217 TLEPVKTQFGYHVIYIEDKKAKATKNFTEVKSFIEQRLKMEKAKTVMLAKMKELEKKATI 276

Query: 315 H 315
            
Sbjct: 277 K 277


>gi|170720931|ref|YP_001748619.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           W619]
 gi|169758934|gb|ACA72250.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           W619]
          Length = 623

 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/402 (12%), Positives = 114/402 (28%), Gaps = 89/402 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++++  +    +    A  S+    +NG+ I+  ++S+  
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAASHSQDAAKVNGQTISQNELSQAA 60

Query: 61  ALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF- 106
            + + Q +                L   A++ LI   L  Q  + +   F    ++    
Sbjct: 61  DMQRRQLMQQLGKDFDPALLDEKLLRDAALKGLIERKLLLQGAKDAKFAFSEAALDQVIL 120

Query: 107 --VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM--- 161
              +   +   +A+ F   + + G G   F++ LA + +   V        +   +    
Sbjct: 121 QTPEFQVDGKFNADRFDQVIRQMGYGRLQFREMLAEEMLIGQVRTGIAGSSFVTDQQVDA 180

Query: 162 --------------------------EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
                                     +        ++        + V+  +   K    
Sbjct: 181 FARLENQTRDFASLTFKANPAAVKVSDDEVKAHYEQHAKEFMTPDQVVIDYVELKKSAFF 240

Query: 196 GFVQKRIKDAEESRLR---------------------------------LPKDCNKLEKF 222
             V+    + +    +                                 + +   K E F
Sbjct: 241 DQVKVTDDELKAQYEKEIANLAEQRHAAHILIEVNDKVTDAQAKARIEEVEQRLAKGEDF 300

Query: 223 ASKIHDVS--------IGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAIC 273
           A    + S         G   +       P F++   K      + P  TQ G   I + 
Sbjct: 301 AKLAKEFSQDPGSANSGGDLGFAGPGVYDPVFEDALYKLDDGQVSAPVRTQFGYHLIKLL 360

Query: 274 DKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            K+  ++    +LK  L+       +E+   +  K+L+  A 
Sbjct: 361 GKQAPEVPSFASLKDKLTRDLKTPLVEQRYVDASKQLQDAAY 402


>gi|313681753|ref|YP_004059491.1| ppic-type peptidyl-prolyl cis-trans isomerase [Sulfuricurvum
           kujiense DSM 16994]
 gi|313154613|gb|ADR33291.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfuricurvum
           kujiense DSM 16994]
          Length = 280

 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 78/283 (27%), Gaps = 41/283 (14%)

Query: 45  TINGEVITDGDISKRIALLKLQK-------INGELEKIAVQELIVETLKKQEIEKSGITF 97
           T+NG+ IT  +++K +      +          EL +  ++ +I + L   + +K G+  
Sbjct: 26  TVNGDEITSDEVNKVLMEGTQGRFDSLPADKQNELRQRIIEGMIAQELVYDDAQKIGVLD 85

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                                                        +   V +        
Sbjct: 86  SKEYKQEL---------------------------EALVNRLKVQLAAKVWEQQQFEAIK 118

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
               E+ A         V +  I      +             +    ++ R        
Sbjct: 119 VDAKEVKAYFDANPEEFVDKEKIHARHILVKTEGEAQSIIKSMKGLSGDKLRNEF---IA 175

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT--TNPYVTQKGVEYIAICDK 275
           + +  ++       G   Y     + P F +     +     + P  +Q G   I I DK
Sbjct: 176 QAKSKSTGPSAAKGGDLGYFPRGQMVPSFNDAAFAMKEGAISSTPVQSQFGYHVIYIEDK 235

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +     G   +K ++  +    K +    + +  LR+ A I Y
Sbjct: 236 KPAKKLGFDEVKNFIEQRLKMDKFKATMEKKMSDLRAKAKIIY 278


>gi|326791007|ref|YP_004308828.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           lentocellum DSM 5427]
 gi|326541771|gb|ADZ83630.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           lentocellum DSM 5427]
          Length = 246

 Score = 91.3 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/284 (10%), Positives = 75/284 (26%), Gaps = 46/284 (16%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALL---KLQKINGELEKIAVQELIVETLKKQEIEKSG 94
           M +++   ++G  I   D+   +  +    +Q  + E +K  V EL+++ L   +  K G
Sbjct: 1   MENKVLAVVDGRAIKQSDLYDLLRSIGQNAMQFQSEEGQKQLVDELVMQELLYSDAIKHG 60

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
           +  +                                            +         + 
Sbjct: 61  LDKEEEFTAALEQMTKS-------------------------------LLKQYAMGKLLE 89

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
                + E+    +  +     +   +     +   +   +   + +             
Sbjct: 90  SVTASDEEVKEYYETHQGQFKSDEAAKANHILVATLEEAEKVAEEIK---------AGLS 140

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAIC 273
                +K+++       G         + P+F+      S    + P  TQ G   I + 
Sbjct: 141 FAEAAKKYSTCPSASQGGALGEFTRGRMVPEFETAAFAMSPGEISAPVQTQFGYHIIELE 200

Query: 274 DKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                      A+K  +  Q    K +       ++L S   + 
Sbjct: 201 ALTPAGLSPLEAVKEQVKEQCLLAKRQALYLAKRQELESLYTVE 244


>gi|312128222|ref|YP_003993096.1| ppic-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778241|gb|ADQ07727.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 335

 Score = 90.9 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/318 (10%), Positives = 93/318 (29%), Gaps = 20/318 (6%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI----- 60
               +  +       VL+I  I        +   +R    +NGE IT  + +        
Sbjct: 1   MDKRTKIVLFSIAAVVLLIILIAVTPEIVRYVDENRAVAIVNGEKITKKEFAINYRSQIN 60

Query: 61  ----------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
                       +  +    ++++  +  LI+  ++ Q+  K  IT  +           
Sbjct: 61  YYGLDKAFLSQKVGDKTYEQQIKENVLNGLIIRQIELQQARKRNITLTAAEKKAI--DQQ 118

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                S     +   +        +     Q I   +V   +     N +      +   
Sbjct: 119 IQQYKSDSQSGAEFKQYLQTIGATENEYKDQVIKSQIVSKLYDEVTKNQKATDAEIESYY 178

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDV 229
            +       ++        N  + +   +K+ ++  +            +K++       
Sbjct: 179 NSHKSDFVEVKASHILFKVNDSKEEATKKKKAEEILQMIKDGQNFEKLAQKYSEDETTKQ 238

Query: 230 SIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
             G   Y  +  +  +F++     +    ++   T  G   I + D++ L     +K  +
Sbjct: 239 KGGDLGYFRKGQMVKEFEDAAFSLNIGEISSIVKTSYGFHIIKVTDRKQLSLNE-VKDEI 297

Query: 289 SAQNTPTKIEKHEAEYVK 306
            +     K +++    ++
Sbjct: 298 KSTIESQKKDEYYQSLLE 315


>gi|261418900|ref|YP_003252582.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp.
           Y412MC61]
 gi|297531148|ref|YP_003672423.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp.
           C56-T3]
 gi|319765717|ref|YP_004131218.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp.
           Y412MC52]
 gi|261375357|gb|ACX78100.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp.
           Y412MC61]
 gi|297254400|gb|ADI27846.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp.
           C56-T3]
 gi|317110583|gb|ADU93075.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp.
           Y412MC52]
          Length = 281

 Score = 90.9 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 85/304 (27%), Gaps = 41/304 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +  + +      +  +S  S   S  I  T NG  IT  +    +           + K 
Sbjct: 1   MKKWMMAAAVVSLMALSACSNDGSEAIVETKNGN-ITKDEFYNEMK--------ERVGKS 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +++LI E +  ++ + +    D                      +           + +
Sbjct: 52  VLRDLIDEKVLSKKYKVTDEEIDREIERI--------------KEAYGTQYDLAVQQNGE 97

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           + +        +     +      E E+       K      +++               
Sbjct: 98  KVIREMVKLDLLRTKAAVEDIKVTEKELKEYYDNYKPKIRASHIL--------------- 142

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              +K  K+ +    +        ++++       + G   +     +  +F+    K  
Sbjct: 143 VKDEKTAKEVKAKLDKGEDFAKLAKEYSQDPGSASNGGDLGWFGPGKMVKEFEEAAYKLK 202

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE-AEYVKKLRSNA 312
               ++P  T  G   I + DK        +K  ++ +    K++       V KL  +A
Sbjct: 203 VGEVSDPVKTDYGYHIIKVTDKEKKKSFNEMKDEIAFEVKRNKLDPATMQSKVDKLVKDA 262

Query: 313 IIHY 316
            +  
Sbjct: 263 GVEI 266


>gi|126641590|ref|YP_001084574.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii ATCC
           17978]
          Length = 414

 Score = 90.9 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 94/293 (32%), Gaps = 19/293 (6%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIA----LLKLQK----INGELEKIAVQELIVETL 85
                +  +   ++  VI   D+ + +A     L+ QK        L+   + +LI+   
Sbjct: 3   SFAQPTDEVVAIVDNSVILKSDLEQGMAEAAHELQAQKKEVPPQQYLQFQVLDQLILRQA 62

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLS--AEDFSSFLDKQGIGDNHFKQYLAIQSI 143
           + ++++K GI  D  ++N   ++ A  +G                    + +  +A    
Sbjct: 63  QLEQVKKYGIKPDEKSLNEAVLKVASQSGSKSLEAFQQKLDAIAPGTYENLRSRIAEDLA 122

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
              + +   M +    + ++    +  +           +   I  +  Q    V K ++
Sbjct: 123 INRLRQQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHVIHMRISGDNPQEVQNVAKEVR 182

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYV 262
                   L    N L+K ++    V      +   SD+  +    +       TT+   
Sbjct: 183 SQLAQSNDL----NALKKLSTATVKVEGADMGFRPLSDIPAELAARITPLQDGQTTDLIS 238

Query: 263 TQKGVEYIAICDKRD----LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            + GV  + + +++              ++  Q +     ++  + +  +   
Sbjct: 239 VRDGVHVLKLLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKR 291



 Score = 88.2 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 17/157 (10%), Positives = 52/157 (33%), Gaps = 3/157 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +   ++K           +T    I  +++ +    ++ I    +              +
Sbjct: 246 LKLLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLKAGEDFATLAATY 305

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           ++        G   ++    + P+F + + +      + P+ TQ G   + + DKR+   
Sbjct: 306 SNDTGSARDGGSLGWVTPGMMVPEFDKKMQEIPVGEISEPFQTQFGWHILQVTDKREKDM 365

Query: 281 E-IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                +          +       +++++R+NA +  
Sbjct: 366 THEYQERMARQILGERQFNTEIDSWLREVRANAYVEI 402


>gi|89100557|ref|ZP_01173417.1| post-translocation molecular chaperone [Bacillus sp. NRRL B-14911]
 gi|89084744|gb|EAR63885.1| post-translocation molecular chaperone [Bacillus sp. NRRL B-14911]
          Length = 293

 Score = 90.9 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/301 (10%), Positives = 98/301 (32%), Gaps = 27/301 (8%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +  F+        +++  +    +   +        ++  E I   ++   +        
Sbjct: 1   MMGFLTK-KIGLGILVLILAAAGTAAFFLSKEPAVASVGSESIKKEELYSLLV------- 52

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             +    A+  L+ + + + E +K  +T  +            + G   E F + L++ G
Sbjct: 53  -KQYGDEALDALVTDKIIEMEAKKEKVTISNKEKEEELKNLKESYG-GEEGFKAALEQSG 110

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
           + +    + +        +++     +    E EI A  ++ K+   ++  ++       
Sbjct: 111 VTEAGIAEDIEKYLKTEKLLE----PRIDLKEDEIKAYFEENKDQFAQQEQVKASHIL-- 164

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYLLESDLHPQFQ 247
                     +   K+ +    +  +  +  +++++      S G+  Y  + ++   F+
Sbjct: 165 -------VEDEATAKEVKSKLDKGEEFADLAKEYSTDASNAESGGELGYFGKGEMEAAFE 217

Query: 248 NLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEY 304
               +   N  + P  T  G   I + DK++         K          +++     +
Sbjct: 218 EAAFELKANEISGPVKTDYGYHIIKVEDKKEAKEAVYEDSKEAAKKALFDERMQTEYYNW 277

Query: 305 V 305
           +
Sbjct: 278 L 278


>gi|332878099|ref|ZP_08445829.1| PPIC-type PPIASE domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332684061|gb|EGJ56928.1| PPIC-type PPIASE domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 459

 Score = 90.9 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/302 (10%), Positives = 89/302 (29%), Gaps = 17/302 (5%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           ++ F KLL  +  L     + + +     +   +   +  E I   D+           I
Sbjct: 1   MNLFKKLLYAFVFLFEGIQMHLFAQSPNNVVDEVIWVVGDEAILRSDVEAARMDFGA-NI 59

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
           +G    +  ++L ++ L   + +   +  +++ ++           + A       +   
Sbjct: 60  SGNPYCVIPEQLAIQKLFLHQAQLDSVEVENSQISANMEARLNELIMRAGSKEKLEEYYH 119

Query: 129 IGDNHFKQYLAIQSIWP---DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
                 ++ +            V+ +          E+    + M   ++     +  + 
Sbjct: 120 KTMTQIREMMFESLKEQYTVQRVRENLTSDIKVTPAEVRRYFKDMPEDSLPWISDQVEVQ 179

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS-----IGKAQYLLES 240
            I       Q  +++   +  +   R+    +     A    +        G+  Y+   
Sbjct: 180 IITQQPRIPQEEIERVKAELRDYTDRVNNGESSFSTLAILYSEDPGSARYGGEMDYVGRG 239

Query: 241 DLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE 298
           +L P F N+          +    ++ G   I + DKR    +      +       K+ 
Sbjct: 240 ELDPAFANVAFSLTDPKKISKVVESEYGFHIIQLVDKRGDKVK------VRHILRKPKLA 293

Query: 299 KH 300
           + 
Sbjct: 294 QA 295


>gi|283779465|ref|YP_003370220.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pirellula staleyi
           DSM 6068]
 gi|283437918|gb|ADB16360.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pirellula staleyi
           DSM 6068]
          Length = 325

 Score = 90.9 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 79/289 (27%), Gaps = 22/289 (7%)

Query: 9   LSDFIKLLTTYFVLII-FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK--- 64
           ++   KL  T     +   ++  +   +   +     T+NG  IT  D+   +A L    
Sbjct: 1   MNLLAKLPATCVAASLPLLLLVAMGAAAELSADETLATVNGHAITRADVDAFVAKLAPPK 60

Query: 65  -----------LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
                          N +L    +  L+   L    +E+S +                + 
Sbjct: 61  SSTQPPQPVEVPVVDNPQLRAETLAMLVDRELVLSFLERSKLAASEED----IDLIVASF 116

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
                     LD               Q +W +  K     +  +  +E    K+     
Sbjct: 117 TRELTTQGLTLDDHLKQQQLSLARFRRQLLWNESWKKYVARQTTDANLEKFFTKRVRDFD 176

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL-EKFASKIHDVSIG 232
             R  +    L    +   +    V  R ++ + S            ++F+      S G
Sbjct: 177 GTRIRVAHLRLPVDANATPEAAEQVMARAREIKRSIDAGELTFAAACQQFSEAPSAKSGG 236

Query: 233 KAQYLLE-SDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG 279
           +  ++     +   F           T+ P ++  GV+ +         
Sbjct: 237 ELGWIGRHDSMPEPFAAAAFSLEVGQTSGPVLSPVGVQLVHCLAIEPGK 285


>gi|332829602|gb|EGK02248.1| hypothetical protein HMPREF9455_01518 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 461

 Score = 90.9 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/309 (12%), Positives = 97/309 (31%), Gaps = 18/309 (5%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
            +K    + +L I     ++      +  +I   +  E I   D+ K   ++  +    E
Sbjct: 1   MVKQAGKFILLAILLSSGLLCKAQDNIIDQIIWVVGDEAILKSDVEKARQMMLSRGERIE 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                   E++AVQ+L ++  K   I+                    N G   +      
Sbjct: 61  GDPYCLIPEQLAVQKLFLDQAKIDSIDVPTAEVSRGVTRQE-NMVIANLGSKEKVEEYLQ 119

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI---R 181
                    +++ +    +  +V K     K      E+     ++   ++         
Sbjct: 120 ASMSQLREEWREEIRNGYLVSEVKKKLVGKKSSLTPSEVRRYYAQLPQDSLPYIPTTVEV 179

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
            ++ + P   L     V++R++D                 ++      + G+  +   + 
Sbjct: 180 QIITNEPIVPLAEIDKVKERLRDFTNRVNAGESFSTLAIMYSEDGSAQNGGETGFSGRAS 239

Query: 242 LHPQFQNLLKKSQN--NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
              +F N+     +    +N   T+ G   I + ++R   G++    ++     P   E 
Sbjct: 240 WVTEFSNMAFSLNDPKKVSNIVETEYGFHIIQLIERR---GDLINVRHIL--LRPKVPEA 294

Query: 300 HEAEYVKKL 308
              + + K+
Sbjct: 295 EFEKAIAKM 303


>gi|254247979|ref|ZP_04941300.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia
           PC184]
 gi|124872755|gb|EAY64471.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia
           PC184]
          Length = 260

 Score = 90.9 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 81/278 (29%), Gaps = 47/278 (16%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKING--ELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I        +A L  Q      +L++   QEL+   +  QE  + GI    +
Sbjct: 25  IAVVNGTPIPKSRADAMVAQLVQQGQTDGPQLQQAVRQELVNREILMQEAIREGIPNRPD 84

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q++    +   F+ K    +
Sbjct: 85  VKAQV-------------------------------AVAQQTVVLRSMIESFLKKNQPTD 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+     ++                + + +       + +            K  +  +
Sbjct: 114 AEVKTRYDELVKGVGGNREYHLHHILVDNEQQAKDLIAKIK---------GGAKFEDLAK 164

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAICDKRD 277
           +++       + G   +       P+F    +K  +   T+ P  TQ G   I + D RD
Sbjct: 165 QYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDAPVKTQFGWHIIRVDDIRD 224

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +         + AQ     +++    + + LR  A I 
Sbjct: 225 IAP--PPFDQVKAQIAQQLVQQKLQAFEEGLRQQAKIQ 260


>gi|158421935|ref|YP_001523227.1| PpiC-type peptidyl-prolyl cis-trans isomerase precursor
           [Azorhizobium caulinodans ORS 571]
 gi|158328824|dbj|BAF86309.1| PpiC-type peptidyl-prolyl cis-trans isomerase precursor
           [Azorhizobium caulinodans ORS 571]
          Length = 314

 Score = 90.9 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 80/281 (28%), Gaps = 48/281 (17%)

Query: 39  SSRIRTTINGEVITDGDI---SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGI 95
           S  +  T+NG  I   ++      I     Q      ++  +  L   TL  Q  +   +
Sbjct: 49  SDPVVETVNGAPIRASELAIAEDDIGPGLPQVQGAARQEYILSFLTDMTLLAQAAQAQKL 108

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
                                                    YL  +++   ++  +    
Sbjct: 109 DQSPEFAAK------------------------------MNYLRTKALMETLMAAEAKKA 138

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
                     ++   +     E   R +L              + + K+           
Sbjct: 139 VTEDAKRKTYDEFVKQTKPETEVHARHIL-----------VDSEAKAKEIAAKAKAGADF 187

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICD 274
               ++ +        G   Y  +  + P+F +   K  +   ++P  TQ G   I + D
Sbjct: 188 AKLAKENSKD-SAEDGGDLGYFTKDQMVPEFADAAFKLDKGQVSDPVKTQFGWHVIKVED 246

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           KR     I     +S Q     I K +++ V KLRS+A + 
Sbjct: 247 KRQKP--IPTYEQVSDQIDQYLIRKAQSDLVTKLRSDAKVE 285


>gi|87306930|ref|ZP_01089076.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Blastopirellula
           marina DSM 3645]
 gi|87290303|gb|EAQ82191.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Blastopirellula
           marina DSM 3645]
          Length = 369

 Score = 90.9 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/293 (12%), Positives = 85/293 (29%), Gaps = 32/293 (10%)

Query: 41  RIRTTINGEVITDGDISKRIALLKLQKINGEL------EKIAVQELIVETLKKQEIEKSG 94
            I   +N   I D D+ +  A        G+L      +   +  LI   L  Q IE + 
Sbjct: 57  EIEAFVNNAPIYDVDVERAAAKAFGAASKGDLDLPFGLKSSVLNRLIDRELALQYIESTD 116

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
               S+ VN    +  +      +   ++L +        ++ +A    WP         
Sbjct: 117 FRPSSSEVNREISRVKKELEARGKSLDAYLTENHTDMRMLRRRIAWNIAWPRY------A 170

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI---KDAEESRLR 211
                +  +    +  +          + +    +    +Q   ++R    +   + +  
Sbjct: 171 DASLTDDNLRRYFELHRRDFDGTQRKLSQILLTTNETEPSQVVERQRDIAARLRVQIKRG 230

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLE-SDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEY 269
                     +++       G   ++   + L  +  N    +       P  T  G+  
Sbjct: 231 EFAFEKAARSYSNAPSSEQGGLVGWIGRHNQLPEEIHNAAFDAPLGEVAGPIQTSFGIHL 290

Query: 270 IAICDKR-DLGGEIALKAYLSAQNTPTKIEKHEAEYV-----KKLRSNAIIHY 316
           I + +++        +K  +          +    Y+      + RS A + Y
Sbjct: 291 ICVTEEQLGEIPWEEVKHEVR---------EAAERYLFSYTADRGRSQADVKY 334


>gi|126668935|ref|ZP_01739876.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter sp. ELB17]
 gi|126626598|gb|EAZ97254.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter sp. ELB17]
          Length = 624

 Score = 90.9 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/399 (10%), Positives = 103/399 (25%), Gaps = 86/399 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +    I  +    +++   +  + +            T+NG+ IT+ +  + +
Sbjct: 1   MLQDMRENAQGTIAKIIIGLLILSLSVWGMDAIIGGFSGEPEVATVNGQDITEREFLRVV 60

Query: 61  ALLKLQK------------INGELEKIAVQELIVETLKKQEIEKS--------------- 93
            L    +               ++    +Q LI E +  Q+ ++                
Sbjct: 61  QLESQNRLSRMERPDPSLLDEDQIRVDVLQALIEEQVLAQDADRQGLALSDADIDALITQ 120

Query: 94  --GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN----------------HFK 135
                 D       FV   RN G+   +F   + KQ + +                    
Sbjct: 121 MPQFQVDGQFNRDQFVTTVRNVGMGVGEFRDAMRKQTVVNQIRAGIVASGVVTSNSITRL 180

Query: 136 QYLAIQSIWPDVVK---NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS------ 186
             +  Q+    ++    +    +      +I A      N+  +   +            
Sbjct: 181 MKIQNQTRDFRLLNISASAVADQVNVSAGDIQAFYDSNPNLFQQPEQVDVSYVVLSLNAL 240

Query: 187 ----------------------------IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
                                            +++       ++  ++           
Sbjct: 241 ADAIVISDEELLTYYQSREADLAREERRAAHILVEDTADADAVVERIQQRLADGEDFAAL 300

Query: 219 LEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
            ++ +         G   +       P F + L        ++P  T  GV  I + D R
Sbjct: 301 AQELSIDTVSGEQGGDLGFAGRGVYDPAFDEALFSLEPGTVSDPVRTSFGVHLIKLNDIR 360

Query: 277 --DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             D+     + A L    +  +  +  A+    L  +A 
Sbjct: 361 RSDVPALADVAAQLRDDLSREQAREAYAQARTTLADSAY 399


>gi|108758423|ref|YP_630863.1| peptidylprolyl cis-trans isomerase [Myxococcus xanthus DK 1622]
 gi|108462303|gb|ABF87488.1| peptidylprolyl cis-trans isomerase [Myxococcus xanthus DK 1622]
          Length = 524

 Score = 90.9 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/371 (11%), Positives = 94/371 (25%), Gaps = 69/371 (18%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDIS----KRIALLKLQ- 66
           FI  +   F L              A +     ++NG+ I   D +    ++++ L+ Q 
Sbjct: 17  FIIGIAVVFTLQFGPGSSGFGATGGATAPGSVASVNGKEIPLRDFAAAWAQQMSFLRSQG 76

Query: 67  -------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                       +    +  L+   L  Q  E+ GI    + +     Q+         D
Sbjct: 77  SPVPESLARQFGMHNQVLDRLVNTELLAQAAERHGIAASDDELRKLIHQNTDFQKDGQFD 136

Query: 120 FSSFLD----KQGIGDNHFKQYLAIQSIWPDVVK-------------------------- 149
           F  +              F+  L  Q     ++                           
Sbjct: 137 FERYQQVLRDFYRKSPQDFEAELRRQLAAQKMMDVVRGNAVVSDDEVRARFEKEGNQAKV 196

Query: 150 -------NDFMLKY------------GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                    +  K                E +I    +  + +  +   IR     +   
Sbjct: 197 VFARFLPAMYADKVPSPTAAQLAEWKKAHEKDIKEYFEANRFVYQQPERIRARQVLVKLP 256

Query: 191 KLQNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF 246
                   +  ++ A+  R                +         G   ++      P  
Sbjct: 257 PEATADQKKAALEKAQALRKEIEGGKDFAQVARDSSEDPGSKARGGDLGWVERGSWEPAL 316

Query: 247 QNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPT-KIEKHEA 302
            +      Q   T P  T+ GV  + + +K+    +    ++  ++       + ++   
Sbjct: 317 ADAAFALKQGEVTQPVETKFGVHLVKVDEKQAAQDKKLEDVQDEIATTLYKQDRAKQQAR 376

Query: 303 EYVKKLRSNAI 313
              +K  ++A 
Sbjct: 377 AEAEKALASAK 387


>gi|146277165|ref|YP_001167324.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555406|gb|ABP70019.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 405

 Score = 90.9 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 98/276 (35%), Gaps = 7/276 (2%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRT---TINGEVITDGDISKRIALLKLQKIN 69
           +K   ++ +  +       +    A +  +      +N  VIT+ +  +R+  L +    
Sbjct: 1   MKTFVSHCLAFVMASGLTFASAVDAPAQNLFAPRLVVNDRVITNYEFEQRVRFLTILGAT 60

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
           G+LEK A+  LI + ++    E++G+    + V     + A    LSAE F + L K G+
Sbjct: 61  GDLEKQAMDALIDDKIRLDAAERAGLKATESQVTEGMEEFAGRANLSAEAFVAELGKAGV 120

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
               F+ ++    +W ++++  F  +    E  I     +    T    L+  ++   P 
Sbjct: 121 APETFRDFVHAGLVWRELMRARFGAEARPSETAIDRAITRQTRRTTIRLLLSEIIIPTPP 180

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL-ESDLHPQFQN 248
            +  +   + + I+   +      +         +       G+  ++  ++        
Sbjct: 181 GQEADALALAEEIRRTAQGETAFAQAARSYS---ASSSAERGGRIDWVPLQNLPPSLGPL 237

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL 284
           LL  S    ++P      V    +    +       
Sbjct: 238 LLTLSPGQVSDPLKIPNAVALFQVRAIDETSEPAPA 273


>gi|118602546|ref|YP_903761.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567485|gb|ABL02290.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 298

 Score = 90.9 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 97/295 (32%), Gaps = 5/295 (1%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVE 83
              ++   S  ++ + + I   +N +++T   IS  I     +     L    +  LI++
Sbjct: 4   TLLLICAFSLNAFTIPNSIIAIVNDDLVTFDQISVDIKSNHTKVQKLVLVNQQID-LILQ 62

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
             K +++  +      N++      +     +  +    F +               Q I
Sbjct: 63  LQKIKQLNITPKENAINSMLGNIASNNNLNLMQLQSLPKFDEVIDHVKQSLSLEGLRQFI 122

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
             ++      ++     ++ P +  K+        +    +  +          ++  + 
Sbjct: 123 VENLDIKLTEVEIIKQLIKTPNHSNKLTQQIKIAQIAVNSIDQVDSLLRSKDSLIKDFLI 182

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYV 262
           D  E   +        + ++      + GK+ +L    L   F+      S  + + P+ 
Sbjct: 183 DLSEKINKGDSFSTLAKLYSQDASYKNGGKSDWLNLLKLPEIFKQNLKNLSVGDLSQPFK 242

Query: 263 TQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
             +    + I DKR +   +     L  +    K   +  +++KKLR  A I  +
Sbjct: 243 IGQVWRIVKIIDKRSVDNYLI---ELKTKLIRQKENIYFNDWIKKLRKEAYIEIF 294


>gi|227485003|ref|ZP_03915319.1| possible peptidylprolyl isomerase PrsA [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227237000|gb|EEI87015.1| possible peptidylprolyl isomerase PrsA [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 343

 Score = 90.9 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 88/275 (32%), Gaps = 23/275 (8%)

Query: 43  RTTINGEVITDGDISKRIALL-KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
              +NGE I+       ++    +      L+   VQ ++ + L   +++ + I      
Sbjct: 47  IAIVNGEKISKDAYKAEMSFYGSMLASRQNLKNSIVQMMVQDKLIADDMKANKIEISDKE 106

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
           VN  F+   +  G   +      D     +   +       +     +  F  ++   E 
Sbjct: 107 VNDAFLNSVKQFGGQEQFDKMLDDYNMDVEKFKETVKKD--LMYKKHREWFEKEHPVTEE 164

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           EI    +  K+   +      ++              +K  K+ ++   +        ++
Sbjct: 165 EIKQYYEDNKDKFAKRDASHILV------------ADEKTAKEVKDKLDKGADFAALAKE 212

Query: 222 FASK-IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG 279
           ++    +  + G+        +  +F++      +   + P  TQ G   I +    D  
Sbjct: 213 YSKDTANAANGGELGTFSRGQMVKEFEDAAFSLKEGEISGPVKTQFGYHIIKVNKIADSI 272

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            +           T    +K  ++Y+K+L   A +
Sbjct: 273 EDN------KEAITKALNDKKYSDYIKELNKKANV 301


>gi|83749030|ref|ZP_00946037.1| Signal Peptide isomerase rotamase [Ralstonia solanacearum UW551]
 gi|83724293|gb|EAP71464.1| Signal Peptide isomerase rotamase [Ralstonia solanacearum UW551]
          Length = 299

 Score = 90.9 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 65/280 (23%), Gaps = 48/280 (17%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              +NG  I    +   I     Q  + EL   A   L+   L +Q+  K G        
Sbjct: 61  AAVVNGHAIPSAKVDALIKK-SGQPDSPELRNRARDMLVDRELIEQDAAKRG-------- 111

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                     +      Q    Q+    +V  +F     N    
Sbjct: 112 --------------------------LLGRDDVQEQLAQARLNVLVAAEFEDYVKNSPTT 145

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                ++ + I  +    +           +                          +  
Sbjct: 146 EDELHKQYEKIKAQFGNGKEYHAHHILVDKEADAKA------IIAKLKAGGNFEEIAKAQ 199

Query: 223 ASK-IHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTT-NPYVTQKGVEYIAICDKRDL- 278
           +       + G   +       P+F   L    +   T  P  TQ G   I + D RD  
Sbjct: 200 SKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGEITLTPVKTQFGWHVIRLDDTRDAK 259

Query: 279 -GGEIALKAYLSAQNTPTK--IEKHEAEYVKKLRSNAIIH 315
                 +K  L       +          +K LR  A I 
Sbjct: 260 IPAFEDVKPQLLEMMMGDQNWQRAKFQAMLKDLREKATIK 299


>gi|319404585|emb|CBI78191.1| peptidyl-prolyl cis-trans isomerase [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 308

 Score = 90.9 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/290 (10%), Positives = 74/290 (25%), Gaps = 48/290 (16%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISK---RIALLKLQKINGELEKIAVQELIVETLKKQ 88
           + +     S +   I+G+ IT G + +    I    ++  + +     ++  +      +
Sbjct: 32  AAEKPVPLSHVIAVIDGKNITAGQLDELALEINPNLVRVPDEKRRVTVLKAYLDMQALAK 91

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
              + G+                                          +    +     
Sbjct: 92  AALQKGLDKTEAYDKR------------------------------MAIMRDNILQQLYF 121

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
           K   + K  + +++   +K+        E   R +L              ++  +   + 
Sbjct: 122 KEMVVDKIADADVKALYDKEIAALPKEDEIKARHIL-----------VKTKEEAEKVIKR 170

Query: 209 RLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT-NPYVTQKG 266
             +        +K ++       G   Y     +   F+           T  P  +  G
Sbjct: 171 LNKGESFEEIAKKDSTDGSSAVGGDLGYFSRGQMVKPFEEAAFNLKVGEYTKKPVESPFG 230

Query: 267 VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
              I I D+R       +   +        I +H    +  LR    + Y
Sbjct: 231 WHVIKIEDRRLKQP--PVFDDVKDVLRTQLIREHYQTLITDLRGKINVEY 278


>gi|217967894|ref|YP_002353400.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dictyoglomus
           turgidum DSM 6724]
 gi|217336993|gb|ACK42786.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dictyoglomus
           turgidum DSM 6724]
          Length = 355

 Score = 90.9 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/323 (13%), Positives = 91/323 (28%), Gaps = 27/323 (8%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ---- 66
              K+L   FV I       V+     M +     ING  ++  +   R+  +K Q    
Sbjct: 5   SIFKILFIVFVAIFILGGAFVALVYHQMKNYPVLKINGMPVSRQEYKDRLNFMKTQYSIM 64

Query: 67  -------KINGELEKIAVQELIVE---TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
                      +L      E I +       Q   K      S       ++       S
Sbjct: 65  FNVDFTTTEGQKLLPKVKDETIKDLARWKIVQTEAKKRGISISEKEVDTRLKEIEKEFPS 124

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
              F   L + G   N FK+ L    +   ++  +        E EI     +   +   
Sbjct: 125 VLQFEMTLAQYGYDRNTFKEELRKNLLMRKLID-EIGKDEKVTEDEIKKYYNENIKLF-- 181

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQ 235
                                 ++  +   E         +  +K++         G+  
Sbjct: 182 ------EHPKEYKVYSILIKDEKRAKEVYNELTSNKITFTDAAKKYSEDTTTKDKGGELG 235

Query: 236 YLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQN 292
           ++ +  L  + + +      N  + P  T +G     + + ++         KA +  + 
Sbjct: 236 FITQGTLPEEVEKITFTLPLNQISKPIKTNEGYYITKVTEVKEAYTTPYFQAKAEIEDKL 295

Query: 293 TPTKIEKHEAEYVKKLRSNAIIH 315
              K  K   ++++   S A I 
Sbjct: 296 LYDKRAKVFNKWLEDQVSKAKIE 318


>gi|258545949|ref|ZP_05706183.1| peptidyl-prolyl cis-trans isomerase SurA [Cardiobacterium hominis
           ATCC 15826]
 gi|258518827|gb|EEV87686.1| peptidyl-prolyl cis-trans isomerase SurA [Cardiobacterium hominis
           ATCC 15826]
          Length = 433

 Score = 90.9 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/273 (10%), Positives = 82/273 (30%), Gaps = 12/273 (4%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELI-----VETLKKQEIEKSGITFDSNTVNYF 105
           IT+  + + IA L  ++ +          LI         +  E++           +  
Sbjct: 165 ITERQVDEYIAKLAREQGSTI---HVQDLLIPLPEGDAQSRAGEVDAKIREVSQALRDSG 221

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
                 +  ++   ++   D               +    ++V++  +   G   +++ +
Sbjct: 222 GNLQQASARVAGARYNDLGDVNLGRIPPRFARALAKLGAGEIVESPVVDDDGMHFLKVAS 281

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
                 N T+ E  +  +L    D +  N       I    ++         +  + A  
Sbjct: 282 KHSAEGNYTLAEADVSHILLRNNDGRDDNSKARIDAIYRELQAGADFASLARRYSEDAQ- 340

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDL-GGEIA 283
                 G   ++       +    ++     + + P  T  G   + + ++R     E  
Sbjct: 341 -SAAKGGDLGWVSADQFGGELAQAIETQAVGSISKPIKTPYGYHILLVRERRQSDKSEAV 399

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           ++  +        +++   + ++ LR  A I  
Sbjct: 400 VREQIKRNLYAKALDEAWQQRLQSLRREAYIDI 432



 Score = 73.6 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 87/262 (33%), Gaps = 13/262 (4%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQ 88
           +      I   +N E IT   +++ I   +            ELE   ++ +I+  L  Q
Sbjct: 35  ASQPIDEIGLVVNDEAITRRQLTQEIEAARRNLPKELKLPAGELEHQLLEHVIMNHLLAQ 94

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAED-FSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
             +K G+    + +N    Q A    +S +  ++      G+  + F++ +        +
Sbjct: 95  IEKKVGLEISEDELNTAIAQIAGRNKVSEQKLYAQAQRDTGLSRDAFREQVRKSLAQEHM 154

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG-FVQKRIKDAE 206
            +          E ++     K+         ++ +L  +P+   Q++   V  +I++  
Sbjct: 155 KEGMVGADINITERQVDEYIAKLAREQGSTIHVQDLLIPLPEGDAQSRAGEVDAKIREVS 214

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS-QNNTTN-PYVTQ 264
           ++      +  +     +            +    + P+F   L K         P V  
Sbjct: 215 QALRDSGGNLQQASARVAGARYN---DLGDVNLGRIPPRFARALAKLGAGEIVESPVVDD 271

Query: 265 KGVEYIAICDKRDLGGEIALKA 286
            G+ ++ +  K    G   L  
Sbjct: 272 DGMHFLKVASKHSAEGNYTLAE 293


>gi|219856704|ref|YP_002473826.1| hypothetical protein CKR_3361 [Clostridium kluyveri NBRC 12016]
 gi|219570428|dbj|BAH08412.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 258

 Score = 90.9 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/282 (10%), Positives = 78/282 (27%), Gaps = 39/282 (13%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
           M + +   +N   IT+ D    +     ++          ++L+ E +  +     G   
Sbjct: 12  MQNNVLAIVNNVEITENDFKNVVKRFPAERQQYFNTDEGKKQLLDEIISFELFYNYGKEI 71

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
           +      + V+                           +    + +  + + +  M    
Sbjct: 72  ELEKDRDYLVKL--------------------------ETTKKELLIQETI-SKIMENIK 104

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             + E+       K++  +   I      +   +   Q   + +         +     +
Sbjct: 105 VTDKEVEDYYTNNKSMYKKPENITARHILVDSFEKAAQISNEIK---------KGLSFED 155

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR 276
             +K++S       G         + P+F+    +      + P  TQ G   I +  K 
Sbjct: 156 AAKKYSSCPSKAQGGNLGNFTRGQMVPEFETAAFQLEIGILSKPVKTQFGYHLIKVEKKE 215

Query: 277 D--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
              + G   +K  +       K     ++ +  L+    I  
Sbjct: 216 KDSIKGFDKVKNAIKNGLLQEKRTLEYSKCINNLKDKYPIEI 257


>gi|157828738|ref|YP_001494980.1| protein export protein prsA precursor [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|157801219|gb|ABV76472.1| protein export protein prsA precursor [Rickettsia rickettsii str.
           'Sheila Smith']
          Length = 282

 Score = 90.9 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 81/301 (26%), Gaps = 38/301 (12%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           + +IF  V ++S  ++A   ++  T  G  +    I K        +    ++       
Sbjct: 4   LSVIFLSVSMLSGIAFADKDKVVATYKGGEVKASQIMKEFKPQLNLQSGETIKN------ 57

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
                                     ++   N  L  E+ +              +    
Sbjct: 58  --------------FDDFPPQDQEKLIKIYVNNLLLKEEVAKSNITSSKEFQEKLENAKN 103

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           Q    +++ N       +   +   NK         +  +  +L              QK
Sbjct: 104 QLAQQELLANYIKSNITDKMFDDEYNKYVGNLKGKEQIKVAHIL-----------VKSQK 152

Query: 201 RIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYL---LESDLHPQFQNLLKK-SQN 255
              D +    +        E+ +  K    + G   Y+       L P+F+        N
Sbjct: 153 EANDIKTKLSKGGNFTKLAEELSLDKASASNGGVIGYILLNQPGQLVPEFEKKAFALKVN 212

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             + P  T  G   I + +K+ +   I  K             +   +Y+  L + A + 
Sbjct: 213 EVSTPVKTDFGWHIIKVLEKKPVP--IPTKEEAKVTIDNILAAEILKKYIADLEAKANVK 270

Query: 316 Y 316
            
Sbjct: 271 I 271


>gi|209543390|ref|YP_002275619.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531067|gb|ACI51004.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 308

 Score = 90.5 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/276 (10%), Positives = 71/276 (25%), Gaps = 50/276 (18%)

Query: 43  RTTINGEVITDGDISKRIALLKLQK---INGELEKIAVQELIVETLKKQEIEKSGITFDS 99
             ++NGE I   D+ +  A +  Q        +  + + +LI +   +            
Sbjct: 50  VASVNGEDIHLADVRQAAANMPAQLRQLPPNMIFPMLLNQLIDQKAIQAAAT-------- 101

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
                                      +           A+ ++    +         + 
Sbjct: 102 ----------------------HAGLDKQPDVQQQMHAAAMNALQNAYLSQQVTPTLTDA 139

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
            ++    +         E   R +L              +   KD  +            
Sbjct: 140 AVQAYYTQHYANKKPEAEIHARHIL-----------VATEAEAKDVIKQLKAGADFGALA 188

Query: 220 EKFA--SKIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTN-PYVTQKGVEYIAICDK 275
            K +        + G   +  + D+ P F +       +  +  P  TQ G   I + D 
Sbjct: 189 TKLSTDKASAKQNGGDLGWFKKGDMLPAFSDAAFAMKPHTFSQTPVHTQYGWHVIEVLDT 248

Query: 276 R--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
           R  D+    A++  +  +     +     + V  ++
Sbjct: 249 RTADVPKLDAVRDEIRQKLIQQGVRDAVEKAVAGVK 284


>gi|283479299|emb|CAY75215.1| putative protease maturation protein [Erwinia pyrifoliae DSM 12163]
          Length = 623

 Score = 90.5 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/396 (7%), Positives = 105/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + +  +  +    +++ F +  +  Y +          +NG+ I    + +  
Sbjct: 1   MMDNLRAASNHVVLKVILGLIILSFILTGVGGYLTGGSGDY-AAKVNGQEIGRAQLERAF 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           +  + ++                   ++ + A+ +LI E L  Q  ++ G+    + +  
Sbjct: 60  SSERARQQQMLGEQFSVLAGNEGYMQQMRQQALSQLIDEMLLTQYAKEIGLAIGDDQIKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             + S ++  G   + + + L  Q     ++             
Sbjct: 120 AIFTQPAFQTDGKFDNAKYLSIINNMGFTADQYAEALRKQLTTQQLIGSVTGTDFVLGNE 179

Query: 149 ---------KNDFMLKY-----------GNLEMEIPANKQKMKNITVREYLIRTV----- 183
                    +   + +               + EI    Q+ ++  +     R       
Sbjct: 180 TDSLAALVAQQRLVREVTINVNALAAKQNVTQEEIANYYQQHQSSLMSPEQFRVSYIKMD 239

Query: 184 ------------LFSIPDNKLQNQGF------------VQKRIKDAEESRLRLPKDCNKL 219
                       + S       +                +   +   ++  +        
Sbjct: 240 ASAMLQPVSESDIQSWYQQHQDDYTQPQRNRYSIIQTKTEAEARSVLDALNKGGSFAKLA 299

Query: 220 EKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++      + G   +L       + +N   K +   ++   +  G     + D +  
Sbjct: 300 KEKSADPISARNGGDMGWLEPETTPDELKNAALKEKGQLSDVITSSVGFIVARLDDTQPE 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    +   ++ +    K      +  +K+   A
Sbjct: 360 KVKALSEVHDEIARKLKQEKAVVAFYKLQQKVSDAA 395


>gi|107028909|ref|YP_626004.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia AU 1054]
 gi|116689933|ref|YP_835556.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia HI2424]
 gi|170733271|ref|YP_001765218.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia MC0-3]
 gi|105898073|gb|ABF81031.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia AU 1054]
 gi|116648022|gb|ABK08663.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia HI2424]
 gi|169816513|gb|ACA91096.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia MC0-3]
          Length = 260

 Score = 90.5 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 82/278 (29%), Gaps = 47/278 (16%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKING--ELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I        +A L  Q      +L++   QEL+   +  QE  + GI    +
Sbjct: 25  IAVVNGTPIPKSRADAMVAQLVQQGQTDGPQLQQAVRQELVNREILMQEAIREGIPNRPD 84

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q++    +   F+ K    +
Sbjct: 85  VKAQV-------------------------------AVAQQTVVLRSMIESFLKKNQPTD 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+ A   ++                + + +       + +            K  +  +
Sbjct: 114 AEVKARYDELVKGVGGNREYHLHHILVDNEQQAKDLIAKIK---------GGAKFEDLAK 164

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAICDKRD 277
           +++       + G   +       P+F    +K  +   T+ P  TQ G   I + D RD
Sbjct: 165 QYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDAPVKTQFGWHIIRVDDIRD 224

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +         + AQ     +++    + + LR  A I 
Sbjct: 225 IAP--PPFDQVKAQIAQQLVQQKLQAFEEGLRQQAKIQ 260


>gi|312623037|ref|YP_004024650.1| ppic-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203504|gb|ADQ46831.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 335

 Score = 90.5 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/318 (12%), Positives = 95/318 (29%), Gaps = 20/318 (6%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI----SKRIA 61
               +  +       VL+I  I        +   +R    +NGE IT  +       +I 
Sbjct: 1   MDKRTKIVLFSIAAVVLLIILIAVTPEIVKYVDENRAVAIVNGEKITKKEFAINYRSQIN 60

Query: 62  LLKLQKI-----------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
              L K              ++++  +  LI+  ++ Q+ ++  I   S        Q  
Sbjct: 61  YYGLDKTFLSQKVGDKTYEQQIKENVLDGLIIRQIELQQAKRKNIALTSAEKKAIDQQIE 120

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
           +    S         +        +     Q I   +V   +     N +      +   
Sbjct: 121 QYKSDSQSGAEF--KQYLQTIGATENEYKDQVIKSQIVSKLYDEITKNQKATDAEIENYY 178

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDV 229
            +       ++        N  + +   +K+ ++  +            +K++       
Sbjct: 179 SSHKSDFVEVKASHILFKVNDSKEEATKKKKAEEVLQMIKDGQNFEKLAQKYSEDETTKQ 238

Query: 230 SIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
             G   Y  +  +  +F++     +    +N   T  G   I + DK+ L     +K  +
Sbjct: 239 KGGDLGYFRKGQMVKEFEDAAFSLNIGEISNIVKTSYGYHIIKVTDKKQLSLNE-VKDEI 297

Query: 289 SAQNTPTKIEKHEAEYVK 306
            +     K +++    ++
Sbjct: 298 KSTIESQKKDEYYQSLLE 315


>gi|296157842|ref|ZP_06840676.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           Ch1-1]
 gi|295892088|gb|EFG71872.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           Ch1-1]
          Length = 259

 Score = 90.5 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 79/278 (28%), Gaps = 48/278 (17%)

Query: 43  RTTINGEVITDGDISKRIALL--KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I        I  L  + Q+   +L+    +EL+   +  QE  + G+    +
Sbjct: 25  IAVVNGTPIPKARADALIDQLVHQGQQNTPQLQTAVREELVNREILMQEALRRGLPNRPD 84

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q++    +  DF+      +
Sbjct: 85  IKAQI-------------------------------AVAQQTVVLRALIEDFVKNNTPTD 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+ A    +      +      +    + + ++     K                +   
Sbjct: 114 AEVTARYNALIKDAGGKEYHLHHILVDNEQQAKDLIAKIKA----------GASFEDLAR 163

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTN-PYVTQKGVEYIAICDKRD 277
           +++       + G   +       P+F +      +   T+ P  TQ G   I + D R+
Sbjct: 164 QYSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKGQMTDTPVHTQFGWHIIRVDDVRN 223

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +         +  Q      ++    + + LR NA I 
Sbjct: 224 ITP--PPLEQVRPQIVQQIQQEKLQAFEEGLRKNAKIQ 259


>gi|22124938|ref|NP_668361.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pestis
           KIM 10]
 gi|45440627|ref|NP_992166.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108808639|ref|YP_652555.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pestis
           Antiqua]
 gi|108811102|ref|YP_646869.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pestis
           Nepal516]
 gi|145600047|ref|YP_001164123.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pestis
           Pestoides F]
 gi|149365001|ref|ZP_01887036.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis CA88-4125]
 gi|162420506|ref|YP_001607415.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Angola]
 gi|165926634|ref|ZP_02222466.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936039|ref|ZP_02224609.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010989|ref|ZP_02231887.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212996|ref|ZP_02239031.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399316|ref|ZP_02304840.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167421506|ref|ZP_02313259.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423714|ref|ZP_02315467.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468476|ref|ZP_02333180.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis FV-1]
 gi|218930183|ref|YP_002348058.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pestis
           CO92]
 gi|229838757|ref|ZP_04458916.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229896089|ref|ZP_04511259.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Pestoides A]
 gi|229899325|ref|ZP_04514468.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229901331|ref|ZP_04516453.1| Peptidyl-prolyl cis-trans isomerase ppiD [Yersinia pestis Nepal516]
 gi|270489517|ref|ZP_06206591.1| PPIC-type PPIASE domain protein [Yersinia pestis KIM D27]
 gi|294504885|ref|YP_003568947.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Z176003]
 gi|21957777|gb|AAM84612.1|AE013706_7 putative protease maturation protein [Yersinia pestis KIM 10]
 gi|45435484|gb|AAS61043.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108774750|gb|ABG17269.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Nepal516]
 gi|108780552|gb|ABG14610.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Antiqua]
 gi|115348794|emb|CAL21748.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis CO92]
 gi|145211743|gb|ABP41150.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Pestoides F]
 gi|149291414|gb|EDM41488.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis CA88-4125]
 gi|162353321|gb|ABX87269.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis Angola]
 gi|165916184|gb|EDR34791.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921562|gb|EDR38759.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989989|gb|EDR42290.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166205783|gb|EDR50263.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166960425|gb|EDR56446.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051820|gb|EDR63228.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057884|gb|EDR67630.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229681260|gb|EEO77354.1| Peptidyl-prolyl cis-trans isomerase ppiD [Yersinia pestis Nepal516]
 gi|229687727|gb|EEO79800.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229695123|gb|EEO85170.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701012|gb|EEO89041.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Pestoides A]
 gi|262362950|gb|ACY59671.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis D106004]
 gi|262366870|gb|ACY63427.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis D182038]
 gi|270338021|gb|EFA48798.1| PPIC-type PPIASE domain protein [Yersinia pestis KIM D27]
 gi|294355344|gb|ADE65685.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Z176003]
 gi|320016339|gb|ADV99910.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 628

 Score = 90.5 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/399 (9%), Positives = 105/399 (26%), Gaps = 87/399 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + ++ +  +    +++ F +  + SY     +      +N + I+   + + +
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSNDY-AAKVNDQDISRAQLEQAM 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                    +L +  + +LI   L  Q   K G+T     V  
Sbjct: 60  QSERGRLQQKLGEQFSVLAANEGYMQQLRQQVLGQLINNVLLDQYARKLGLTVSDEQVKE 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY---LAIQSIWPDVVK------------ 149
              Q          D + +L          +Q+      Q I   ++K            
Sbjct: 120 SIRQIPDFQTGEHFDNNRYLALINQLGYTPEQFAQLQRQQLINQQLLKAFSDTGFVLPIE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                     +    + E+ A   + K+  +    ++    ++ 
Sbjct: 180 VQAMSALVLQQRDVRLATLDLKALQAEQKVTDEELQAYYDQNKHNFIAPEQMKVSFIAMD 239

Query: 189 DNKLQNQGFVQKRIKDAE-------------------------------ESRLRLPKDCN 217
              +Q+   V +    A                                +   +      
Sbjct: 240 AAAMQSNITVTEEDIAAYYDQNRSSYTQPERRNYSVIQFKTEVEAKAALDELKKGADFAV 299

Query: 218 KLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
             ++ ++  I   + G+  +L       + +      +   ++   +  G   + + D +
Sbjct: 300 IAKEKSTDIISRNNGGELGWLEPETTPDEVKAANLSEKGQLSDVIKSSVGYLIVRLNDIK 359

Query: 277 D--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
              +     +   L+ +    K         +K+   A 
Sbjct: 360 PELVKPLSEVHDELAKKLKQEKALDAYYALQQKVNDAAT 398


>gi|291296508|ref|YP_003507906.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus ruber
           DSM 1279]
 gi|290471467|gb|ADD28886.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus ruber
           DSM 1279]
          Length = 305

 Score = 90.5 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/309 (10%), Positives = 76/309 (24%), Gaps = 28/309 (9%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE-----------L 72
           +  ++  +   + A S  +  T+    IT   +  R  L                    L
Sbjct: 6   LLFLITALGSLAVAQSDPVVATVANTTITKSQLELRFGLYIRDSERQNGLSYSEEALAAL 65

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +K  ++ +  E     + E +G     + V     +   +         +  +       
Sbjct: 66  KKRFLELVARERAIILKAEAAGFAASKDDVQAAVAEVKADFDSEEAFTQALKEAGIPSLE 125

Query: 133 HFKQYLAIQSIWPDVVKNDFML-KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
            +   +     +   +++     K     + +     K +    + Y    +L       
Sbjct: 126 VYHTLVYEALTYNAYLEHLLKQLKTSEPALRLLYLVSKSQFALPKRYCSAHIL------- 178

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLL 250
                   +          +  K  +     +         G             F+  L
Sbjct: 179 ----VDTAQEAYQVIARLGKGEKFADLARALSKDPGSKEEGGDLGCEPRGTFVAPFELAL 234

Query: 251 KKSQNNTTN--PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
              Q   ++  P  T+ G   I +  KR           + A+   T         +  +
Sbjct: 235 VALQPGESSKVPVKTEFGYHIILL--KRVEAAGFQGFEEVRAELDQTIRNSAVYRLLLWI 292

Query: 309 RSNAIIHYY 317
             +  I  +
Sbjct: 293 EKSTPIQLF 301


>gi|49473855|ref|YP_031897.1| peptidyl-prolyl cis-trans isomerase [Bartonella quintana str.
           Toulouse]
 gi|49239358|emb|CAF25691.1| Peptidyl-prolyl cis-trans isomerase [Bartonella quintana str.
           Toulouse]
          Length = 317

 Score = 90.5 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/328 (9%), Positives = 82/328 (25%), Gaps = 67/328 (20%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSR-------------------IRTTINGEVITD 53
              +T +    +     +      ++ S                    +   I+G+ IT 
Sbjct: 3   FNFITLFLTSTLLASTSLGVMAQKSVESASNDLKNLEKASEKTVPPSHVMAVIDGKEITA 62

Query: 54  GDISK---RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           G + +    I    ++  + +     ++  +   +  +     GI               
Sbjct: 63  GQLDELALEINPNLVRFPDEQRRITVLKAYLDMQVLAKAAISKGIDKTEAYDKR------ 116

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                                      +    +     K   + +  + ++E   NK+  
Sbjct: 117 ------------------------MAVMRDNVLQQLYFKQMIVDQISDTDLETLYNKEVA 152

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS 230
                 E   R +L              +K  +   +   +        +K ++      
Sbjct: 153 ALPKEDEVKARHIL-----------VKTKKEAEAIIKRLSKGESFEAVAKKNSTDGSAAV 201

Query: 231 IGKAQYLLESDLHPQFQNLLKK-SQNNTT-NPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
            G   Y     +   F++          T  P  +  G   I + D+R       +   +
Sbjct: 202 GGDLGYFSHGQMVKPFEDAAFGLKVGEYTKKPVESPFGWHVIKVEDRRLKQP--PIFDDV 259

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                   I++   + +  LR+   + Y
Sbjct: 260 KEMLRTQLIKERYQKLIVDLRNTIDVKY 287


>gi|322508232|gb|ADX03686.1| Peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii
           1656-2]
          Length = 414

 Score = 90.5 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 94/293 (32%), Gaps = 19/293 (6%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIA----LLKLQK----INGELEKIAVQELIVETL 85
                +  +   ++  VI   D+ + +A     L+ QK        L+   + +LI+   
Sbjct: 3   SFAQPTDEVVAIVDNSVILKSDLEQGMAEAAHELQAQKKEVPPQQYLQFQVLDQLILRQA 62

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLS--AEDFSSFLDKQGIGDNHFKQYLAIQSI 143
           + ++++K GI  D  ++N   ++ A  +G                    + +  +A    
Sbjct: 63  QLEQVKKYGIKPDEKSLNEAVLKVASQSGSKSLEAFQQKLDAIAPGTYENLRSRIAEDLA 122

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
              + +   M +    + ++    +  +           +   I  +  Q    V K ++
Sbjct: 123 INRLRQQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHVIHMRISGDNPQEVQNVAKEVR 182

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYV 262
                   L    N L+K ++    V      +   SD+  +    +       TT+   
Sbjct: 183 SQLAQSNDL----NALKKLSTATVKVEGADMGFRPLSDIPAELAARITPLQDGQTTDLIS 238

Query: 263 TQKGVEYIAICDKRD----LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            + GV  + + +++              ++  Q +     ++  + +  +   
Sbjct: 239 VRDGVHVLKLLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKR 291



 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 17/157 (10%), Positives = 52/157 (33%), Gaps = 3/157 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +   ++K           +T    I  +++ +    ++ I    +              +
Sbjct: 246 LKLLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLKAGEDFAILAATY 305

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           ++        G   ++    + P+F + + +      + P+ TQ G   + + DKR+   
Sbjct: 306 SNDTGSARDGGSLGWVTPGMMVPEFDKKMQEIPVGEISEPFQTQFGWHILQVTDKREKDM 365

Query: 281 E-IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                +          +       +++++R+NA +  
Sbjct: 366 THEYQERMARQILGERQFNTEIDSWLREVRANAYVEI 402


>gi|323526035|ref|YP_004228188.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1001]
 gi|323383037|gb|ADX55128.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1001]
          Length = 259

 Score = 90.5 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/278 (12%), Positives = 76/278 (27%), Gaps = 48/278 (17%)

Query: 43  RTTINGEVITDGDISKRIALL--KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I        I  L  + Q+   +L+    +EL+   +  QE  + G+     
Sbjct: 25  IAVVNGTPIPKSRADALIDQLVHQGQQNTPQLQMAVREELVNREVLMQEALRRGL----- 79

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                    +                +   ++++          
Sbjct: 80  -------------------------QNRPDIKAQVAVAQQTVVLRALIEDFVKKNAPTDA 114

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
                    +K+   +EY +  +L              +++ KD               +
Sbjct: 115 EVTARYNALIKDAGGKEYHLHHIL-----------VDNEQQAKDLIAKIKGGASFEELAK 163

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTN-PYVTQKGVEYIAICDKRD 277
           +++       + G   +       P+F +      +   ++ P  TQ G   I + D R 
Sbjct: 164 QYSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKGQMSDTPVHTQFGWHIIRVDDVRS 223

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +         +  Q      ++    + + LR NA I 
Sbjct: 224 ITP--PPLEQVRPQIVQQIQQEKLQAFEEGLRKNAKIQ 259


>gi|182420516|ref|ZP_02643225.2| foldase protein PrsA [Clostridium perfringens NCTC 8239]
 gi|182624265|ref|ZP_02952050.1| foldase protein PrsA [Clostridium perfringens D str. JGS1721]
 gi|177910483|gb|EDT72856.1| foldase protein PrsA [Clostridium perfringens D str. JGS1721]
 gi|182380295|gb|EDT77774.1| foldase protein PrsA [Clostridium perfringens NCTC 8239]
          Length = 325

 Score = 90.5 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/314 (12%), Positives = 88/314 (28%), Gaps = 21/314 (6%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING------------ 70
                  +V     A+      T+NGE IT G++   +  +  Q  +             
Sbjct: 2   FSAVGCNMVEKTQAAIDKTTVATVNGEKITLGEVDSHLKGVFAQMKSQYGDKYMDDPQVA 61

Query: 71  ----ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
               +  +  VQ L+ + +   E +K GI      +     +   N      D      +
Sbjct: 62  QQILQQRQSVVQSLVTDKVLVAEADKLGIKPSEEDIKKKVDEQFENIKKGMGDNFDKALE 121

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
                    +      +  +             + +I     + K   V +         
Sbjct: 122 AEGYTEDTFKEFLKNQVIAEATVEYATKDVKVSDEDIKKYYDENKQQFVVKAGADVKHLL 181

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
            P  +   + + + +      +   L     K +    +    ++G+  Y   +      
Sbjct: 182 FPTEEEAQKAYDEIQSGKT--TFDDLFNKYEKNKDPKKEPIAENLGRVDYNNSNFDKDFM 239

Query: 247 QNLLKKSQNNTTNPYVTQKGVEYIA---ICDKRDLGGEIALKAYLSAQNTPTKIEKHEAE 303
           + L        + P  +  G   I    I DK     E   K  + +     K ++   +
Sbjct: 240 EGLKGLKDGEISKPVKSSFGYHIIKATNITDKETQLTEEQAKEQIISILENQKKKEAYQK 299

Query: 304 YVKKLRSNAIIHYY 317
            +++ + +  +  Y
Sbjct: 300 DLEQWKKDLNVKVY 313


>gi|301597698|ref|ZP_07242706.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii AB059]
          Length = 344

 Score = 90.5 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 17/157 (10%), Positives = 52/157 (33%), Gaps = 3/157 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +   ++K           +T    I  +++ +    ++ I    +              +
Sbjct: 176 LKLLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLKAGEDFATLAATY 235

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           ++        G   ++    + P+F + + +      + P+ TQ G   + + DKR+   
Sbjct: 236 SNDTGSARDGGSLGWVTPGMMVPEFDKKMQEIPVGEISEPFQTQFGWHILQVTDKREKDM 295

Query: 281 E-IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                +          +       +++++R+NA +  
Sbjct: 296 THEYQERMARQILGERQFNTEIDSWLREVRANAYVEI 332


>gi|300813778|ref|ZP_07094088.1| peptidylprolyl isomerase PrsA3 family protein [Peptoniphilus sp.
           oral taxon 836 str. F0141]
 gi|300512121|gb|EFK39311.1| peptidylprolyl isomerase PrsA3 family protein [Peptoniphilus sp.
           oral taxon 836 str. F0141]
          Length = 249

 Score = 90.5 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 83/284 (29%), Gaps = 47/284 (16%)

Query: 40  SRIRTTINGEVITDGDISKRIAL----LKLQKINGELEKIAVQELIVETLKKQEIEKSGI 95
           ++I   +NG+ IT  D +  I      L+   +N +  K  ++ELI   L  Q+  ++G 
Sbjct: 4   NKILAEVNGKKITGEDYNIFINSINPKLREHLVNSDQNKEVIEELIHHELIYQDAIENGK 63

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
             +                                        A +S+  +      +  
Sbjct: 64  DKEEEF-------------------------------QKVLDQAKKSLLLNYTLGKLLSN 92

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
               E EI       K    ++  +R     + D          K+ ++           
Sbjct: 93  IEVTEKEIEDFYNNHKEHFTKDQTVRASHILVDD---------LKKAEEIYNRIKDGADF 143

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICD 274
             + +  ++     + G         +  +F++          + P  TQ G   I + +
Sbjct: 144 SKEAKNNSTCPSKENGGDLGIFSRGQMVKEFEDACFNMEVGEVSKPVKTQFGYHIIKLVE 203

Query: 275 KRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           K           + ++       K ++   + +  LR  + I Y
Sbjct: 204 KNKAQEMTLEESRDHIIEDIRRQKEQEIYKDKISSLREKSQIKY 247


>gi|23009953|ref|ZP_00050812.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 218

 Score = 90.5 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 48/181 (26%), Gaps = 15/181 (8%)

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
           Y   + +  + ++ +          +   ++         E   R +L            
Sbjct: 28  YFRDKLLLDEYLEREAKKAVTPEAAKALYDQTVKSMKPEEEVHARHIL-----------V 76

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K                 + +         G   +  +  +   F +   K + 
Sbjct: 77  ESEDEAKKIAARIKGGEDFAKVAAELSKDPGSKTEGGDLGWFTQERMVKPFADAAFKLAP 136

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              ++P  TQ G   + + +KR           +  Q       K + + + KLR  A +
Sbjct: 137 GQVSDPVKTQFGWHVLRVEEKRTKPV--PTFDEMKEQIDQYLTRKAQQDTIVKLREAAKV 194

Query: 315 H 315
            
Sbjct: 195 E 195


>gi|220932053|ref|YP_002508961.1| peptidyl-prolyl cis-trans isomerase [Halothermothrix orenii H 168]
 gi|219993363|gb|ACL69966.1| peptidyl-prolyl cis-trans isomerase [Halothermothrix orenii H 168]
          Length = 495

 Score = 90.5 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/330 (14%), Positives = 95/330 (28%), Gaps = 19/330 (5%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLI-IFCIVPIVSYKSWAMSSRI----RTTINGEVI---T 52
           M  K+       I  +    VL   F         S A SS I       +N   I   T
Sbjct: 1   MFKKLRNYSKYIIYFVVAALVLTGAFLGFGAYRNSSPAASSVIDPNYIARVNDTSIPRET 60

Query: 53  DGDISKRIALLKLQKINGEL--EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
                +  A         ++      + +LI   L  QE EK G   +SN  +    +  
Sbjct: 61  YYQYLQNNAQFAQLSREQQVPYRLNLLNQLIERELLLQEAEKLG--IESNPTDKEVKEQI 118

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                +       L +         +             N       +    +  ++ ++
Sbjct: 119 NKMLEAYNITEEKLKELLDSRGIKYEDFKEDIRHNIKTSNIIRKTIEHTYKGVEVSEDEI 178

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS-KIHDV 229
           +    +       +    + K + +  ++K +K+ EE             K++  K+ D 
Sbjct: 179 REAYEKVRPALIAVNIEGEKKKEARAKIEKALKELEE----GKAFGEVAAKYSDLKLKDG 234

Query: 230 SIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAY 287
            +G                  +  +  T++    +KG   + + DK+          +  
Sbjct: 235 DLGFIGRNNGFLPQEVLDKAFELEKGKTSDIIEGEKGYYIVKVIDKKLARGEEFEKSREE 294

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           L  Q    K  +    +++  +  A I  Y
Sbjct: 295 LKDQLLKQKQNRTYQNWLRDTKKQADIEIY 324


>gi|222528654|ref|YP_002572536.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222455501|gb|ACM59763.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 335

 Score = 90.5 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/318 (11%), Positives = 95/318 (29%), Gaps = 20/318 (6%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI----- 60
               +  +       VL+I  I        +   +R    +NGE IT  + +        
Sbjct: 1   MDKRTKIVLFSIAAVVLLIILIGVTPEIVKYVDENRAVAIVNGEKITKKEFAINYRSQIN 60

Query: 61  ----------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
                       +  +    ++++  +  LI+  ++ Q+  K  IT  S        Q  
Sbjct: 61  YYGIDKTFLSQKVGDKTYEQQIKENVLDGLIIRQIELQQARKRNITLTSAEKKAIDQQIE 120

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
           +    S         +        +     Q I   +V   +     N +      +   
Sbjct: 121 QYKSDSQSGAEF--RQYLQTIGATENEYKDQVIKSKIVSKLYDEITKNQKATDAEVENYY 178

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DV 229
            +       ++        N  + +   +K+ ++  +            +K++   +   
Sbjct: 179 SSHKSDFVEVKASHILFKVNDSKEEAAKKKKAEEILQMIKDGQNFEKLAQKYSEDENTKQ 238

Query: 230 SIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
             G   Y  +  +  +F++     +    +N   T  G   I + DK+ L     +K  +
Sbjct: 239 KGGDLGYFRKGQMVKEFEDAAFSLNIGEISNIVKTSYGYHIIKVTDKKQLSLNE-VKDEI 297

Query: 289 SAQNTPTKIEKHEAEYVK 306
            +     K +++    ++
Sbjct: 298 KSTIESQKKDEYYQSLLE 315


>gi|319407575|emb|CBI81225.1| peptidyl-prolyl cis-trans isomerase [Bartonella sp. 1-1C]
          Length = 308

 Score = 90.5 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/287 (11%), Positives = 73/287 (25%), Gaps = 42/287 (14%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIE 91
           + +     S +   I+G+ IT G + +                              EI 
Sbjct: 32  AAEKPVPLSHVIAVIDGKNITAGQLDE---------------------------LALEIN 64

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
            + I           ++   +    A+        +    +     +    +     K  
Sbjct: 65  PNLIRVSDEKRRVTVLKAYLDMQALAKAALQKGLDKTEAYDKRMAIMRDNILQQLYFKEM 124

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
            + K  + +++   +K+        E   R +L              ++  +   +   +
Sbjct: 125 VVDKIADADVKALYDKEIAALPKEDEIKARHIL-----------VKTKEEAEKVIKRLHK 173

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT-NPYVTQKGVEY 269
                   +K ++       G   Y     +   F+           T  P  +  G   
Sbjct: 174 GENFEEIAKKDSTDGSSAVGGDLGYFSRGQMVKPFEEAAFNLKVGEYTKKPVESPFGWHV 233

Query: 270 IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           I I D+R       +   +        I +H    +  LR    + Y
Sbjct: 234 IKIEDRRLKQP--PVFDDVKDVLRTQLIREHYQTLITDLRGKINVEY 278


>gi|91783535|ref|YP_558741.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           xenovorans LB400]
 gi|91687489|gb|ABE30689.1| Putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           xenovorans LB400]
          Length = 259

 Score = 90.5 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 80/278 (28%), Gaps = 48/278 (17%)

Query: 43  RTTINGEVITDGDISKRIALL--KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I        I  L  + Q+   +L+    +EL+   +  QE  + G+    +
Sbjct: 25  IAVVNGTPIPKARADALIDQLVHQGQQNTPQLQMAVREELVNREILMQEALRRGLPNRPD 84

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q++    +  DF+      +
Sbjct: 85  IKAQI-------------------------------AVAQQTVVLRALIEDFVKNNTPTD 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+ A    +      +      +    + + ++     K                +  +
Sbjct: 114 AEVTARYNALIKDAGGKEYHLHHILVDNEQQAKDLIAKIKA----------GASFEDLAK 163

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAICDKRD 277
           +++       + G   +       P+F +      +   T+ P  TQ G   I + D R+
Sbjct: 164 QYSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKGQMTDTPVHTQFGWHIIRVDDVRN 223

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +         +  Q      ++    + + LR NA I 
Sbjct: 224 VTP--PPLEQVRPQIVQQIQQEKLQAFEEGLRKNAKIQ 259


>gi|260584542|ref|ZP_05852288.1| foldase protein PrsA [Granulicatella elegans ATCC 700633]
 gi|260157565|gb|EEW92635.1| foldase protein PrsA [Granulicatella elegans ATCC 700633]
          Length = 316

 Score = 90.5 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/298 (10%), Positives = 84/298 (28%), Gaps = 22/298 (7%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVE 83
           +  +   ++  + + +     T     +T  +  K +             +  +Q L+++
Sbjct: 8   MLAVASTLALAACSNNQSAVATSKAGNVTQEEFYKALK--------ATSGEQTLQRLVLQ 59

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            + + +        D   +         N         +                     
Sbjct: 60  KVLENDA------KDKKALEEEAKTEVANQVKQYGGEDALKAVLARSGFTSVDAYRDTVY 113

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
              ++           + E+       +     +     ++    +   + +   +K+ +
Sbjct: 114 LNKLITAAVKKSTTFSDEEVQKYYDSWEPKATAQ---HILIGVSQNASDEEKAEAKKKAE 170

Query: 204 DAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-P 260
           D  +            ++ ++      + GK      SD+  +F +          T  P
Sbjct: 171 DLIKQLKDGADFDTLAKENSTDKTSAENGGKIGPFKRSDMVKEFADAAYGLKVGEITEEP 230

Query: 261 YVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY--VKKLRSNAIIHY 316
            +TQ G   I + DK + G    +++ L  +    K++     +  V  L  NA +  
Sbjct: 231 VLTQYGYHVIKLVDKPEKGSLSDVRSTLEDELLAEKLKDTATIHSVVSSLVKNADVKI 288


>gi|304315716|ref|YP_003850861.1| PpiC-type peptidyl-prolyl cis-trans isomerase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302777218|gb|ADL67777.1| PpiC-type peptidyl-prolyl cis-trans isomerase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 323

 Score = 90.5 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/287 (10%), Positives = 78/287 (27%), Gaps = 18/287 (6%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQ--KINGELEKIAVQELIVETLKKQEIEK 92
           S  ++  I   ++G+ IT  +       +K Q        + I  Q    +         
Sbjct: 43  SCGVNKNIVAKVDGQDITLKEYQDSFNQVKAQIESDPQYTKDIWNQNYNEQKFIDVVENS 102

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
                    +     +  + T    E    +  ++       K+      +   +V +  
Sbjct: 103 VLDNLILEKLLLKEAEKEKFTATDKEITDEYNAEKATNSKVTKEMAKDNVLINKLVDSW- 161

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
                  + E        K+          ++              +K   +  +   + 
Sbjct: 162 TKNVKVTDSEAEKYYNDNKSQFEVVKASHILVSD------------EKTANEIYDKLQKG 209

Query: 213 PKDCNKLEKFASKIH-DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                  ++++       + G+        +  +F+N          + P  TQ G   I
Sbjct: 210 ANFAELAKQYSIDTSTKDNGGELGEFTRGTMVTEFENAAFALKPGEISKPVKTQYGYHII 269

Query: 271 AICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
              + +       +K+ + +    TK +    +  + L+  A I  +
Sbjct: 270 K-SEGKTTKSFNDVKSSIISYLENTKKQNIFNQKSEALKKAAKIEKF 315


>gi|294635328|ref|ZP_06713825.1| peptidylprolyl cis-trans isomerase D [Edwardsiella tarda ATCC
           23685]
 gi|291091304|gb|EFE23865.1| peptidylprolyl cis-trans isomerase D [Edwardsiella tarda ATCC
           23685]
          Length = 626

 Score = 90.1 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/399 (8%), Positives = 109/399 (27%), Gaps = 87/399 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + +  +  +    ++I F +  + +Y            ++G+ I+   + + +
Sbjct: 1   MMDNLRAAANHVVLKVILALIIISFVLTGVGNYLIGGSGDY-AAKVDGQEISRAQLEQAV 59

Query: 61  ALLKLQKING----------------ELEKIAVQELI-----------------VETLKK 87
              + +                    EL +  +  +I                    +K+
Sbjct: 60  QNERSRLQQQLGDQFSVLAGNEGYMKELRQQVLSRMIDDVLLDQYAKKLNLAISDAQVKE 119

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS----- 142
                     D++  N  +++     GL+ + ++  + +Q +     + + A        
Sbjct: 120 AIRTLPYFQTDNHFDNAKYLEMVARLGLTPDSYAQLMRQQLVTQQLIQGFTATGFTLPSE 179

Query: 143 --------IWPDVVK------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI- 187
                   +   ++          M +    + E+    Q+ +N  +    +R     + 
Sbjct: 180 VSSLAALTMQQRLINLATIDIKQLMPQQKVSDAELQGYYQQHQNSFIAPEAVRVSYIEMD 239

Query: 188 ------------------------------PDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
                                          +     Q   +   K   E   +      
Sbjct: 240 AAAINDKMTVSDAEISAYYDQHKRSFTQPERNKYSVIQVKSEAEAKAIAEQLAKGADFAT 299

Query: 218 KLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
             ++ +S I    + G+  ++       +  N    ++   + P  +  G   + + D +
Sbjct: 300 LAKEHSSDIISRKNGGELGWMEPESTPQEILNAKLTTKGQVSAPIASSVGYLIVRLDDMQ 359

Query: 277 DL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                    ++A ++ +    K         +K+   A 
Sbjct: 360 PAVIKPLSEVRAAIADKVKQQKSLDAFYAMQQKVSDAAT 398


>gi|187923910|ref|YP_001895552.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phytofirmans PsJN]
 gi|187715104|gb|ACD16328.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phytofirmans PsJN]
          Length = 259

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 80/278 (28%), Gaps = 48/278 (17%)

Query: 43  RTTINGEVITDGDISKRIALL--KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I        I  L  + Q+   +L+    +EL+   +  QE  + G+    +
Sbjct: 25  IAVVNGTPIPKARADALIDQLVHQGQQNTPQLQTAVREELVNREILMQEALRRGLPNRPD 84

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q++    +  DF+      +
Sbjct: 85  IKAQI-------------------------------AVAQQTVVLRALIEDFVKNNTPSD 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+ A    +      +      +    + + ++     K                +  +
Sbjct: 114 AEVTARYNALIKDAGGKEYHLHHILVDNEQQAKDLIAKIKA----------GASFEDLAK 163

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAICDKRD 277
           +F+       + G   +       P+F +      +   T+ P  TQ G   I + D R+
Sbjct: 164 QFSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKGQMTDTPVHTQFGWHIIRVDDVRN 223

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +         +  Q      ++    + + LR NA I 
Sbjct: 224 ITP--PPLEQVRPQIVQQIQQEKLQAFEEGLRKNAKIQ 259


>gi|256419700|ref|YP_003120353.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chitinophaga
           pinensis DSM 2588]
 gi|256034608|gb|ACU58152.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chitinophaga
           pinensis DSM 2588]
          Length = 478

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/287 (8%), Positives = 82/287 (28%), Gaps = 15/287 (5%)

Query: 5   VFTSLSDFIKLLTTYFV-LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL 63
           +F  L+  + +   + +      +  +   +   ++ +I   +  ++I   D+   +  L
Sbjct: 8   LFLKLTALVNMNRIFALSAGTLLLCQVAVAQQKMVADKIAAIVGDKIILRSDVEGEMVNL 67

Query: 64  KLQKI----NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                          + ++++I + +   + E+  +    + V+       R        
Sbjct: 68  SRNNADGSLPPNAPCMIMEQIISQKVMVMQAERDSLPVSESDVDGQIENRIRYFQDVYGS 127

Query: 120 FSSFLDKQGIGDNHFKQYLAIQS---IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
                +  G      K+         +    +++           E+      +   +++
Sbjct: 128 PEKMKEVTGYSIYQLKERFRQPIKEGLLAKAMQDKITSSVKVTPSEVKKYFDAIPKDSLQ 187

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGK--- 233
            Y     +  I       +   Q  I    E + ++ +  +   + A    +    K   
Sbjct: 188 YYESELEIGQIVIQPKATKEMDQYAIDRLLEFKKQVQEKTSDFGRLAILYSEDPGAKENK 247

Query: 234 ----AQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
                    +           +  +N  ++P  +Q G   I    ++
Sbjct: 248 GVYILNRNDKQWDADFLAASFRLKENEISSPIKSQFGYHLIQCIKRQ 294


>gi|294775653|ref|ZP_06741161.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Bacteroides vulgatus PC510]
 gi|294450497|gb|EFG18989.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Bacteroides vulgatus PC510]
          Length = 452

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/316 (9%), Positives = 93/316 (29%), Gaps = 16/316 (5%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI--ALLKLQKINGEL 72
           + T  + L++     +  Y    +   +   +  E I   D+      A  + +K +G+ 
Sbjct: 1   MCTKVYALMLMLFAVVSVYGQDNVIDEVVWVVGDEAILKSDVENERLNAQYEGRKFDGDP 60

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
             I  ++L ++ L   +     I      +     +                +       
Sbjct: 61  YCIIPEQLAIQKLFLHQAAIDSIEVSEQEIISDVERRTNWLIDQIGSKEKVEEYYNKTST 120

Query: 133 HFKQYLAIQSIWPDV---VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
             ++ L            ++   +        E+    + +   ++     +  +  I  
Sbjct: 121 QIREMLRENIRDGKTVQKMQQQIVGDIKITPAEVRRYFKDLPQDSIPFIPTQVEVQIITM 180

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS-----IGKAQYLLESDLHP 244
                Q  +++  K   +   R+          A    +        G+  ++  ++L P
Sbjct: 181 EPKIPQEEIERVKKTLRDYTERVTSGEIAFSTLARLYSEDEGSRRRGGELGFMGRAELVP 240

Query: 245 QFQN--LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNT-PTKIEKHE 301
           ++ N     +  N  +    ++ G   I + +KR   G+     ++  +     K  +  
Sbjct: 241 EYANVAFNLQDPNKVSKIVESEFGFHIIQLIEKR---GDRINTRHILLKPKVDEKDLEAA 297

Query: 302 AEYVKKLRSNAIIHYY 317
              +  + ++     +
Sbjct: 298 LLRLDSIANDIRNEKF 313


>gi|162146617|ref|YP_001601076.1| peptidylprolyl isomerase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785192|emb|CAP54738.1| Peptidylprolyl isomerase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 308

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/276 (10%), Positives = 71/276 (25%), Gaps = 50/276 (18%)

Query: 43  RTTINGEVITDGDISKRIALLKLQK---INGELEKIAVQELIVETLKKQEIEKSGITFDS 99
             ++NGE I   D+ +  A +  Q        +  + + +LI +   +            
Sbjct: 50  VASVNGEDIHLNDVRQAAANMPAQLRQLPPNMIFPMLLNQLIDQKAIQAAAT-------- 101

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
                                      +           A+ ++    +         + 
Sbjct: 102 ----------------------HAGLDKQPDVQQQMHAAAMNALQNAYLSQQVTPTLTDA 139

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
            ++    +         E   R +L              +   KD  +            
Sbjct: 140 AVQAYYTQHYANKKPEAEIHARHIL-----------VATEAEAKDVIKQLKAGADFGALA 188

Query: 220 EKFA--SKIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTN-PYVTQKGVEYIAICDK 275
            K +        + G   +  + D+ P F +       +  +  P  TQ G   I + D 
Sbjct: 189 TKLSTDKASAKQNGGDLGWFKKGDMLPAFSDAAFAMKPHTFSQTPVHTQYGWHVIEVLDT 248

Query: 276 R--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
           R  D+    A++  +  +     +     + V  ++
Sbjct: 249 RTADVPKLDAVRDEIRQKLIQQGVRDAVEKAVAGVK 284


>gi|229496559|ref|ZP_04390273.1| peptidyl-prolyl cis-trans isomerase family protein [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316456|gb|EEN82375.1| peptidyl-prolyl cis-trans isomerase family protein [Porphyromonas
           endodontalis ATCC 35406]
          Length = 461

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/308 (12%), Positives = 99/308 (32%), Gaps = 17/308 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ--KING 70
           +  L  + + I    V + +  +  +   +   +  E I   D+  +   L  Q  +++ 
Sbjct: 4   LNSLRPWILAIGLSCVSMCTLLAQQVIDEVVWMVGDEAILRSDVEYQKLRLLSQGVRLDA 63

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
             E    ++L V+ L   + +   IT D   +N +   + +             +     
Sbjct: 64  NSECALPEQLAVQMLFLNQAKIDSITVDDAMINRYVEANIQGMIAEVGSKEKLEEYFNKS 123

Query: 131 DNHFKQYLAIQSIWP---DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
               ++    Q+        ++   +        EI A    +   ++     R  +  I
Sbjct: 124 LTQIREDQRRQAKSGEIVRAMQQKLVSNISVSPSEIRAYFASIPTDSLPYIPTRLEVQKI 183

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV-----SIGKAQYLLESDL 242
               +     + +  +   E    +          A    +      + G+  ++ ++ L
Sbjct: 184 VRKPIVKLSEIDRIKQKLREYSEEVNSGKTSFSTLARLYSEDTRTALNGGEYGFVAKTSL 243

Query: 243 HPQFQNLLKKSQNN--TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH 300
             +F  +L    NN   +    +++G   + I +KR   G++    ++     P   ++ 
Sbjct: 244 ESEFARILFDMPNNKRVSPIIQSEEGYHIVQIIEKR---GDLINFRHIL--LRPKVADEA 298

Query: 301 EAEYVKKL 308
               V KL
Sbjct: 299 LETEVTKL 306


>gi|312796410|ref|YP_004029332.1| peptidyl-prolyl cis-trans isomerase [Burkholderia rhizoxinica HKI
           454]
 gi|312168185|emb|CBW75188.1| Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) [Burkholderia
           rhizoxinica HKI 454]
          Length = 260

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 85/296 (28%), Gaps = 50/296 (16%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAV--QELIV 82
             +   V+  ++A +      +NG  I        +  L  Q      +   +  +EL+ 
Sbjct: 10  AALAGCVAAPAFAQN---IAVVNGTPIPKARADALVKELTRQGQQDSPQLQVMVREELVN 66

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
             L  +E  + GI    +                                     LA QS
Sbjct: 67  RELLMEEALRRGIANRPDVKAQI-------------------------------ALADQS 95

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           +    + +DF+      + EI A  +++         +      +PD +           
Sbjct: 96  VVIRALIDDFLKNNKPSDDEIKARYEQLIKQAGGGNELHLHHILVPDEQQAK-------- 147

Query: 203 KDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNT-TN 259
            +            +  ++ +       + G   +       P+F +   K  +    + 
Sbjct: 148 -ELIAKIKAGASFEDLAKQHSKDPGSAKNGGDLDWANPQSYVPEFADAAGKLKKGEVTST 206

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           P  TQ G   I + D R +         + AQ      ++   ++  +L  NA I 
Sbjct: 207 PVHTQFGWHIIRLDDSRAIQP--PPLDQVKAQVAQQLTQEKLQQFNAELHKNAKIQ 260


>gi|71907562|ref|YP_285149.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas
           aromatica RCB]
 gi|71847183|gb|AAZ46679.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas
           aromatica RCB]
          Length = 628

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/401 (9%), Positives = 89/401 (22%), Gaps = 99/401 (24%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   V    +  I  +    + + F    + SY   A S     +I    IT     + +
Sbjct: 1   MFDAVRN--NKRIVQVFLALITLPFAFFGVDSYMRSAGSGGDVASIGDIKITQQQFQQTL 58

Query: 61  ALLKLQKI-------------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY--- 104
              + +               N E  +  + +LI + L   E  K  ++  ++ +     
Sbjct: 59  REQQERLRTQLGAQFDAKMLDNPEARRAILDDLINQRLLLVEASKKHMSVSNDAIRQTIG 118

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK--------------- 149
                  +   S E + + L  QG+    F+  L        +                 
Sbjct: 119 AIEAFKVDGKFSTERYEAALRAQGMSPTGFEAQLRQDLTLQQLASAVGQSGLVARSVSDR 178

Query: 150 ------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIR---------- 181
                               ++ K    +  +     +           +          
Sbjct: 179 LLSLQTEKREVMEYRFSLESYLDKVKLADDAVRKFYDENGQQFQMPEQAKAEYVVLSMDS 238

Query: 182 ---------TVLFSIPDNKLQNQGFVQKRIKDAE---------------------ESRLR 211
                      + +  D         ++R                          E R  
Sbjct: 239 IGSQLSVSDAEIKAWYDGHKDRFQAAEERRASHILLASEKLGKDKAKAKAEELLAEIRKN 298

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEY 269
                +  +K +         G   +     +   F++          +    +  G   
Sbjct: 299 PAAFADLAKKNSDDPGSASKGGDLGFFGRGMMVKSFEDTAFGLKDGEISGVVESDFGFHI 358

Query: 270 IAICDKRDLGGE--IALKAYLSAQNT----PTKIEKHEAEY 304
           I +        +    +K  + A+        K  +    +
Sbjct: 359 IKVTGIHAAKEKPLADVKGEIEAELKKTGSSRKFAEAAEAF 399


>gi|165933466|ref|YP_001650255.1| peptidyl-prolyl cis-trans isomerase [Rickettsia rickettsii str.
           Iowa]
 gi|165908553|gb|ABY72849.1| peptidyl-prolyl cis-trans isomerase [Rickettsia rickettsii str.
           Iowa]
          Length = 282

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 82/301 (27%), Gaps = 38/301 (12%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           + +IF  V ++S  ++A   ++  T  G  +    I K        +    ++       
Sbjct: 4   LSVIFLSVSMLSGIAFADKDKVVATYKGGEVKASQIMKEFKPQLNLQSGETIKN------ 57

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
                                     ++   N  L  E+ +              +    
Sbjct: 58  --------------FDDFPPQDQEKLIKIYVNNLLLKEEVAKSNITSSKEFQEKLENAKN 103

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           Q    +++ N       +   +   NK  +      +  +  +L              QK
Sbjct: 104 QLAQQELLANYIKSNITDKMFDDEYNKYVVNLKGKEQIKVAHIL-----------VKSQK 152

Query: 201 RIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYL---LESDLHPQFQNLLKK-SQN 255
              D +    +        E+ +  K    + G   Y+       L P+F+        N
Sbjct: 153 EANDIKTKLSKGGNFTKLAEELSLDKASASNGGVIGYILLNQPGQLVPEFEKKAFALKVN 212

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             + P  T  G   I + +K+ +   I  K             +   +Y+  L + A + 
Sbjct: 213 EVSTPVKTDFGWHIIKVLEKKPVP--IPTKEEAKVTIDNILAAEILKKYIADLEAKANVK 270

Query: 316 Y 316
            
Sbjct: 271 I 271


>gi|170760531|ref|YP_001788878.1| peptidylprolyl isomerase [Clostridium botulinum A3 str. Loch Maree]
 gi|226712004|sp|B1KTE0|PRSA_CLOBM RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|169407520|gb|ACA55931.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 335

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 102/332 (30%), Gaps = 22/332 (6%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK--RIALL 63
             S    + +L     ++ F    +V     A +      +NGE I   D+ +  R   +
Sbjct: 1   MRSAKKLLSVLCLGVFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLDENPRFKQV 60

Query: 64  KLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
             Q                    E +   + ELI E +  Q+ ++  +      +N    
Sbjct: 61  VSQMKMQYGEEFEKSEQGKEVIKEQKSQILDELITEKVLLQKGKELKVIPKDEELNKEAD 120

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
           +          +     ++        K+ L        V++         +++E    +
Sbjct: 121 KKVNEIKAVYNNDEKKFEETLKSTGFTKETLKEYLKDQIVIEKVINEATKGVKVEDKDAQ 180

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
           +               +               K++K   +++    K   ++ +  SK  
Sbjct: 181 KYYNENQSMFTEKPNTMNVSHILVKTEDE--AKKVKKRLDAKEDFAKVAKEVSQDGSKDK 238

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALK 285
              +G   Y   +      +  +   +   +NP  TQ G   I I  K++  +    A+K
Sbjct: 239 GGLLGDISYSDSNLDPTFLKAAIALKEGAISNPVHTQFGYHIIKINSKKEYPVKKFDAVK 298

Query: 286 AYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
             +  Q    K ++   + +++ +  + I  Y
Sbjct: 299 EDIKKQLKQEKQQEAYTKKIEEWKKASKIKIY 330


>gi|304439703|ref|ZP_07399603.1| peptidyl-prolyl cis-trans isomerase [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371809|gb|EFM25415.1| peptidyl-prolyl cis-trans isomerase [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 261

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/290 (11%), Positives = 79/290 (27%), Gaps = 47/290 (16%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI----NGELEKIAVQELIVETLKK 87
           S+    M+  I   +N   IT+ D++  ++ L            +    V ELI + +  
Sbjct: 5   SHIGGNMNKEILAKVNDREITNEDLNIFLSQLDPNTRMYFTQNNMMDQVVDELIYQEMIY 64

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
            E  + G+  D + V                                      +++    
Sbjct: 65  MEAIEKGMDKDEDFVK-------------------------------VLEKTKETLLKSY 93

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
                +      + ++       K+       +      + D  +           + +E
Sbjct: 94  ALGKLLETVEITDEDLKNYYDNHKDNFKNNASVEASHILVEDESVAK---------EIKE 144

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKG 266
                       +++++     + G      +  +  +F++          ++P  TQ G
Sbjct: 145 KLNNGADFKELAKEYSNCPSKENGGNLGVFTKGQMVKEFEDAAFNMGVGEISDPVKTQFG 204

Query: 267 VEYIAICDKRDLGG--EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              I + +K D         K  +       K +      V++L     +
Sbjct: 205 YHIIKVTNKNDESVRTFEEAKPDIERLVRREKEKDLYKHTVERLYKKYNV 254


>gi|78066682|ref|YP_369451.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           383]
 gi|77967427|gb|ABB08807.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           383]
          Length = 260

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 83/278 (29%), Gaps = 47/278 (16%)

Query: 43  RTTINGEVITDGDISKRIALL--KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I        +A L  + Q  + +L++   QEL+   +  QE  + GI    +
Sbjct: 25  IAVVNGTPIPKSRADAMVAQLVQQGQTDSPQLQQAVRQELVNREILMQEAIREGIPNRPD 84

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q++    +   F+ K    +
Sbjct: 85  VKAQI-------------------------------AVAQQTVVLRSMIESFLKKNQPTD 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+ A    +                + + +       + +            K  +  +
Sbjct: 114 AEVKARYDDLVKGAGGNREYHLHHILVDNEQQAKDLIAKIK---------AGAKFEDLAK 164

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAICDKRD 277
           +++       + G   +       P+F    +K  +   T+ P  TQ G   I + D RD
Sbjct: 165 QYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDTPVKTQFGWHIIRVDDIRD 224

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +         + AQ     +++    + + LR  A I 
Sbjct: 225 IAP--PPFDQVKAQIAQQLVQQKLQAFEEGLRQQAKIQ 260


>gi|288929626|ref|ZP_06423470.1| peptidyl-prolyl cis-trans isomerase, PPIC [Prevotella sp. oral
           taxon 317 str. F0108]
 gi|288329131|gb|EFC67718.1| peptidyl-prolyl cis-trans isomerase, PPIC [Prevotella sp. oral
           taxon 317 str. F0108]
          Length = 458

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/296 (9%), Positives = 80/296 (27%), Gaps = 16/296 (5%)

Query: 31  VSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ--KINGELEKIAVQELIVETLKKQ 88
            +    ++   +   +  E I   D+       + +  K  G  +    ++L ++ L   
Sbjct: 23  PAVPESSVVDEVIWVVGDEPILKSDVEAARLQAENEGHKFKGNPDCSIPEQLALQKLFLH 82

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
           +     +    + ++    +                + +    +  +Q +        ++
Sbjct: 83  QAAIDSLEVSESEISQGIEEQINYWIQLIGSKEKLEEYRKQTISEMRQAMHDDYKNNRLI 142

Query: 149 ---KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
              K   +        ++    + +   ++        +  I  N       V +     
Sbjct: 143 AMMKEKLVSDVKVSPADVRKYFKDLPADSIPMVPTMVEVEIITQNPKVKTEEVNRIKDQL 202

Query: 206 EESRLRLPKDCNKLEKFASKIH-----DVSIGKAQYLLESDLHPQFQNLLKK--SQNNTT 258
            E   R+ K        A             G+  +   +   P F  +       N  +
Sbjct: 203 REYTDRVTKGETTFATLARLYSEDPGSARQGGELGFTGRAAFDPAFAAVAFNLTDPNKIS 262

Query: 259 NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE-KHEAEYVKKLRSNAI 313
               T+ G   I + DKR   G+     ++  +    + +       +  + S+  
Sbjct: 263 KIVETEFGYHIIQLIDKR---GDKINVRHILLKPRIAQDDIDRSKARLDSIASDIK 315


>gi|170692424|ref|ZP_02883587.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           graminis C4D1M]
 gi|170142854|gb|EDT11019.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           graminis C4D1M]
          Length = 259

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 79/278 (28%), Gaps = 48/278 (17%)

Query: 43  RTTINGEVITDGDISKRIALL--KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I        I  L  + Q+   +L+    +EL+   +  QE  + G+    +
Sbjct: 25  IAVVNGTPIPKARADALIDQLVHQGQQNTPQLQMAVREELVNREILMQEALRRGLPNRPD 84

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q++    +  DF+ K    +
Sbjct: 85  IKAQI-------------------------------AVAQQTVVLRALIEDFVKKNTPSD 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+ A    +      +      +              +++ KD            +  +
Sbjct: 114 AEVTARYNALIKDAGGKEYHLHHILVDN----------EQQAKDLIAKIKGGASFEDLAK 163

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTN-PYVTQKGVEYIAICDKRD 277
           +++       + G   +       P+F +      +   +  P  TQ G   I + D R 
Sbjct: 164 QYSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKGQMSETPVHTQFGWHIIRVDDVRS 223

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +         +  Q      ++    + + LR NA I 
Sbjct: 224 ITP--PPLEQVRPQIVQQIQQEKLQAFEEGLRKNAKIQ 259


>gi|154148224|ref|YP_001407264.1| foldase protein PrsA [Campylobacter hominis ATCC BAA-381]
 gi|153804233|gb|ABS51240.1| foldase protein PrsA [Campylobacter hominis ATCC BAA-381]
          Length = 271

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 94/299 (31%), Gaps = 40/299 (13%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK---LQKINGELEKIAVQELI 81
                +    +  +++++  T++G+ ITD D++  +A +     + +  EL+   + + I
Sbjct: 4   VLFTALSLAVAMNLNAKVFATVDGKDITDADLTPMLAGMPGVNFEALPAELQNQVIDKAI 63

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
              L   E +K+GI  D                                       +A  
Sbjct: 64  DLRLLINEAKKNGIEKDELYKKQL-------------------------------EIAKD 92

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
           +I     +          + EI     K K+  +    I      +       +      
Sbjct: 93  NIALRTWQEKEFNNIKVSDKEIEDFYNKNKDKFIEPASIAASHILVEKEDNAKKIIADLS 152

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN- 259
               +  + +  +   +     S     + G   Y ++  + P+F +   K  +   T  
Sbjct: 153 KLKGDALKKKFAEIAKEKSLDPSG--KQNGGDLGYFVKEQMVPEFGEAANKLKKGELTKT 210

Query: 260 PYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           P  T+ G   I   D +D        +K ++       K +    + +K L+S A I Y
Sbjct: 211 PVKTKFGYHIILKNDAKDKKQLDLAEVKDHIKNIVKQEKFQADFEKKIKDLKSKAKIEY 269


>gi|161524535|ref|YP_001579547.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans ATCC 17616]
 gi|189350709|ref|YP_001946337.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia multivorans
           ATCC 17616]
 gi|160341964|gb|ABX15050.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans ATCC 17616]
 gi|189334731|dbj|BAG43801.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia multivorans
           ATCC 17616]
          Length = 260

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 84/278 (30%), Gaps = 47/278 (16%)

Query: 43  RTTINGEVITDGDISKRIALL--KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I        +A L  + Q  + +L++   QEL+   +  QE  + GI    +
Sbjct: 25  IAVVNGTPIPKSRADAMVAQLVQQGQTDSPQLQQAVRQELVNREILMQEAIREGIPNRPD 84

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q++    +  +F+ K    +
Sbjct: 85  VKAQV-------------------------------AVAQQTVVLRAMIENFLKKNQPTD 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+ A    +                            +++ K+         K  +  +
Sbjct: 114 AEVKARYDDLVKTAGGNREYHLHHIL---------VDSEQQAKELIAKIKGGAKFEDLAK 164

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT-NPYVTQKGVEYIAICDKRD 277
           +++       + G   +       P+F    +K  +   T  P  TQ G   I + D RD
Sbjct: 165 QYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDEPVKTQFGWHIIRVDDIRD 224

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +       A + AQ     +++    + + LR  A I 
Sbjct: 225 VAP--PPFAQVKAQIAQQLVQQKLQTFEETLRQQAKIQ 260


>gi|217970665|ref|YP_002355899.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thauera sp. MZ1T]
 gi|217507992|gb|ACK55003.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thauera sp. MZ1T]
          Length = 260

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 78/311 (25%), Gaps = 55/311 (17%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +  F   L    +     +  + +             +NG  I        +A  + Q  
Sbjct: 1   MKHFPSRLAITLLAGFLALPALAASP--------VAKVNGVAIPGERSDAMLAEQRAQGA 52

Query: 69  N--GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
               +L     +ELI   +  QE  K G+   ++                          
Sbjct: 53  PDGEQLRNAVREELIRREVLSQEAGKRGLDKKADVKAQ---------------------- 90

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
                    +      +    +++       +        +     +  +EY  R VL  
Sbjct: 91  --------MEMARQAILIRAYLQDYVRTNPVDDAELKKEYEAIKGRMGDKEYKPRHVL-- 140

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
                       + + K                ++          G+  +   +     F
Sbjct: 141 ---------VETEDQAKAIIARLQGGTAFEEVAKESRDPGSKERGGELGWSNPAMYVKPF 191

Query: 247 QNLLKKSQNN--TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            + + + Q    TT P  +  G   I + D RD+         +  Q      ++    +
Sbjct: 192 SDAMVQLQKGKYTTTPVKSDFGYHVIQLDDVRDVQP--PPFEEVKPQLQQRLQQQKIERH 249

Query: 305 VKKLRSNAIIH 315
           V  LR  A + 
Sbjct: 250 VLDLREKAKVE 260


>gi|297588598|ref|ZP_06947241.1| peptidyl-prolyl cis-trans isomerase [Finegoldia magna ATCC 53516]
 gi|297573971|gb|EFH92692.1| peptidyl-prolyl cis-trans isomerase [Finegoldia magna ATCC 53516]
          Length = 250

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 83/286 (29%), Gaps = 46/286 (16%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLK---LQKINGELEKIAVQELIVETLKKQEIEKSG 94
              +I   +NGE I   ++   I  L     Q  N E  K    ELI   L   + +KSG
Sbjct: 4   NKDKILAVVNGEEIKQSEVDNFIKALGYRGAQFNNEEGRKRLTDELINRKLLFFDAKKSG 63

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
           +  D   V                                      + +  D    + + 
Sbjct: 64  LDKDEIYVKEV-------------------------------KKQSEELLKDFAMANIIN 92

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
                + ++    +  K+    +         +    L N         + +E       
Sbjct: 93  SVRVSDEDLKEYYENHKDNFKVQPTFTASHILVESEDLAN---------EIKEKIDNDGD 143

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAIC 273
                +++++       G      +  +  +F+N L +++  +   P  TQ G   I I 
Sbjct: 144 FAELAKEYSTCPSKEQGGDLGTFQQGQMVKEFENALIENEIGDIVGPVKTQFGYHIINIK 203

Query: 274 DKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           DK +  +      K  +       K ++   +   KL+    I  +
Sbjct: 204 DKTEGKVKSFEEAKNEVKQTLLQLKQQQAYIDATDKLQKEYKIEKF 249


>gi|150003018|ref|YP_001297762.1| peptidyl-prolyl cis-trans isomerase [Bacteroides vulgatus ATCC
           8482]
 gi|319642196|ref|ZP_07996856.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_40A]
 gi|149931442|gb|ABR38140.1| peptidyl-prolyl cis-trans isomerase [Bacteroides vulgatus ATCC
           8482]
 gi|317386182|gb|EFV67101.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_40A]
          Length = 456

 Score = 90.1 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/316 (9%), Positives = 93/316 (29%), Gaps = 16/316 (5%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI--ALLKLQKINGEL 72
           + T  + L++     +  Y    +   +   +  E I   D+      A  + +K +G+ 
Sbjct: 5   MCTKVYALMLMLFAVVSVYGQDNVIDEVVWVVGDEAILKSDVENERLNAQYEGRKFDGDP 64

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
             I  ++L ++ L   +     I      +     +                +       
Sbjct: 65  YCIIPEQLAIQKLFLHQAAIDSIEVSEQEIISDVERRTNWLIDQIGSKEKVEEYYNKTST 124

Query: 133 HFKQYLAIQSIWPDV---VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
             ++ L            ++   +        E+    + +   ++     +  +  I  
Sbjct: 125 QIREMLRENIRDGKTVQKMQQQIVGDIKITPAEVRRYFKDLPQDSIPFIPTQVEVQIITM 184

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS-----IGKAQYLLESDLHP 244
                Q  +++  K   +   R+          A    +        G+  ++  ++L P
Sbjct: 185 EPKIPQEEIERVKKTLRDYTERVTSGEIAFSTLARLYSEDEGSRRRGGELGFMGRAELVP 244

Query: 245 QFQN--LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNT-PTKIEKHE 301
           ++ N     +  N  +    ++ G   I + +KR   G+     ++  +     K  +  
Sbjct: 245 EYANVAFNLQDPNKVSKIVESEFGFHIIQLIEKR---GDRINTRHILLKPKVDEKDLEAA 301

Query: 302 AEYVKKLRSNAIIHYY 317
              +  + ++     +
Sbjct: 302 LLRLDSIANDIRNEKF 317


>gi|224824918|ref|ZP_03698024.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
           2002]
 gi|224602589|gb|EEG08766.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
           2002]
          Length = 244

 Score = 89.7 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 76/280 (27%), Gaps = 47/280 (16%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             T+NG  IT+  +   +A              A+Q+LI+  L  Q+ + SG+   +   
Sbjct: 2   AITVNGVEITEAMVQAELANH---ADAPSPRDAAIQQLILHELLLQKAKASGLDTSNEG- 57

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                                 Q+I   + K             
Sbjct: 58  --------------------------------------QAIGALLDKELAFTPADEATCL 79

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKL-QNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
              N    +           +LF +       N     K      E +    +  +   +
Sbjct: 80  AFYNDHPEQFRQGESATASHILFPLGQGDDVANMLAKAKAEGVLAEVQANPSRFADLARE 139

Query: 222 FASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP--YVTQKGVEYIAICDKRDLG 279
            ++       G         + P+F+  +  ++     P    TQ G   I + D++  G
Sbjct: 140 HSTCPSGQQGGNLGQFGRGQMVPEFEQAVFSTEAGQITPNLVETQFGYHVIQVNDRQSGG 199

Query: 280 --GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
                 +K  L          +   EY+ KL   A I  Y
Sbjct: 200 QLAFEDIKERLGQYLNEMAGRQMMHEYLSKLVEEAKIEGY 239


>gi|284046681|ref|YP_003397021.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Conexibacter woesei
           DSM 14684]
 gi|283950902|gb|ADB53646.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Conexibacter woesei
           DSM 14684]
          Length = 390

 Score = 89.7 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/376 (9%), Positives = 91/376 (24%), Gaps = 69/376 (18%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD----- 55
           M S V  +L   + L   + +                + S    +++G  IT  D     
Sbjct: 1   MLSSVTKTLRIVLALCAFFVLSFTVAACGGDDESGNDVPSNAVASVDGTPITKADYERWA 60

Query: 56  ----------------------------ISKRIALLKLQKING-------------ELEK 74
                                       + ++    + +                 ++ +
Sbjct: 61  LINAKSPGAQGSPVIIPDPPNYERCIAALERQSRDARARTTPSDSQLRAQCRQVETQIMQ 120

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
            ++  LI     ++E ++ G++     V     +  R +     D+ SFL + G+ +   
Sbjct: 121 QSMALLIQADWIEKEADELGVSVSDADVQRTLEETKRQSFPRRGDYESFLRRSGMTERDI 180

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
              L IQ +   + +            +I A   + ++           +         N
Sbjct: 181 LFRLRIQDLSTRITEKIQREAGDVTSAQITAYYNRNRDQFAVPERRDLEIILTRTEAQAN 240

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKK 252
           +                         ++++      + G+   +                
Sbjct: 241 EAKRA---------IESGTSWAAAARRYSTDALSKGNGGRLLGVARGQQDRALDTAAFNA 291

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEI--ALKAYLSAQNTPT----KIEKHEAEYVK 306
             +    P   Q G   + +              +  +           K+     E+ +
Sbjct: 292 RTDVIVGPVRGQFGWYIVRVTRVTPAKQNSLAESREQIRELLRQQGSSRKLNDFAREFQE 351

Query: 307 KL------RSNAIIHY 316
           +       R   +I  
Sbjct: 352 RWTKLTNCRRGYVIEI 367


>gi|15643674|ref|NP_228720.1| basic membrane protein, putative [Thermotoga maritima MSB8]
 gi|4981448|gb|AAD35993.1|AE001755_16 basic membrane protein, putative [Thermotoga maritima MSB8]
          Length = 329

 Score = 89.7 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/334 (12%), Positives = 99/334 (29%), Gaps = 44/334 (13%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL-- 72
           +    FV++    + +   ++   SS +   +NGE IT   +     +  + +   ++  
Sbjct: 1   MRKLIFVILAVLGISLFG-QATTTSSTVVAIVNGEPITSDLLELEADIDGILRSIAQIDM 59

Query: 73  -------------------EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR-- 111
                              ++  +  LI + L +Q  EK G+      V        +  
Sbjct: 60  RFFNVLTGTEEGLKLLLKYKQEVLNSLIDDLLIQQLAEKEGVGVSDEEVKKEVEARLKET 119

Query: 112 --NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
             + G++ ED   FL   G GD    +      +   +       K            Q 
Sbjct: 120 VESMGITLEDLDKFLQSAGYGDLETFKKRLHWHVKTQLSLQRLQEKITQNATVTLEEAQN 179

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
             N     Y I   +              + ++ +      +         + A      
Sbjct: 180 YYNQNKETYRIPAAVHLYRITTED-----KSKMDEVLSKIRKGEDFLEVATQVA------ 228

Query: 230 SIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKA 286
           + G   ++ E  L    ++++    +     P+ ++       + +KR         +K 
Sbjct: 229 TGGDLGWIEEGKLEKDIESVIFDAPEGAILGPFESEGKFVLYKVVEKRSSSYKKFEEVKQ 288

Query: 287 YLSAQNTPTKIEKHEAEYVKKL----RSNAIIHY 316
            +  +    K  +   ++  K+    + N+ I  
Sbjct: 289 EIMDKLLADKRNQLWNDWFNKVFEEFKKNSHIEI 322


>gi|269926821|ref|YP_003323444.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790481|gb|ACZ42622.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 380

 Score = 89.7 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 89/289 (30%), Gaps = 27/289 (9%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIE 91
           +  +    + I   +NGE IT+ +  + +             +  + ++++  L +QE  
Sbjct: 80  ASTANFDPNGIVAVVNGEKITNKEFYQEL--------EKRYGQDLISDMVITKLIEQEAR 131

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
           K G++  +  +     Q      L        +++   G N     L  Q     ++   
Sbjct: 132 KRGVSLSNEDMQKALQQ------LQTAFPGQSIEEIAQGQNMTGDQLREQVRVMALLDKM 185

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
              +    E +      +   +   +  +R       + +         R     +  + 
Sbjct: 186 LAPQVKVTEQDARNFYNQNPQVFQSQEQLRLGQVVTDNEQQAADAAQALRDGKDLKEVI- 244

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKG-VE 268
                   +  +         G   Y   ++L PQ     ++ +  + ++P     G   
Sbjct: 245 -------AKYGSKSPERAKKNGDLGYKSLNELDPQLGMTVMQMAVGDVSDPIRLPDGSYA 297

Query: 269 YIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            + + D++         +K          KI     +++++L S A I 
Sbjct: 298 VVKMIDRKGGVQMPFDQVKDRAMELAKQDKINSMIPKFLEELYSKAKIQ 346


>gi|332716317|ref|YP_004443783.1| peptidyl-prolyl cis-trans isomerase [Agrobacterium sp. H13-3]
 gi|325063002|gb|ADY66692.1| peptidyl-prolyl cis-trans isomerase [Agrobacterium sp. H13-3]
          Length = 287

 Score = 89.7 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/302 (9%), Positives = 80/302 (26%), Gaps = 48/302 (15%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL---KLQKINGELEKIA 76
               +      + + ++A   ++   +    I   ++   +  L     Q  + + +  A
Sbjct: 7   IAAAVIVATLGLQFPAFAQEDKVVAKVGDLEIHQSELDLAMGNLDPQLAQLPDEQKKVAA 66

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           +   I   L  +     G+    +                                   +
Sbjct: 67  LSGAIDVKLLVKNASAEGLEKTEDFKKR------------------------------ME 96

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
           ++  + +     +   +    N E++   +K+        E     +L            
Sbjct: 97  FIQDRELHNAYFRKHVVDAVTNEEVKARYDKEVAALPKEEEIKAAHIL-----------V 145

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             +   KD  +            ++ ++  +    G   +  +  + P+F+      +  
Sbjct: 146 ASEDEAKDVIKQLDAGKDFAALAKEKSTDSNKDDGGDLGWFGKGRMVPEFEEAAFGLEKG 205

Query: 257 TT--NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                P  TQ G   I + DKR           +  Q     +       ++K +++  I
Sbjct: 206 AYTKTPVKTQFGFHVIKLEDKRIAPP--PAFEQVEPQVRQLVMRDKYVALIEKAKADQKI 263

Query: 315 HY 316
             
Sbjct: 264 EI 265


>gi|67459334|ref|YP_246958.1| protein export protein PrsA precursor [Rickettsia felis URRWXCal2]
 gi|75536240|sp|Q4UKY0|PLP_RICFE RecName: Full=Parvulin-like PPIase; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase plp; AltName: Full=Rotamase plp;
           Flags: Precursor
 gi|67004867|gb|AAY61793.1| Protein export protein PrsA precursor [Rickettsia felis URRWXCal2]
          Length = 282

 Score = 89.7 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 82/301 (27%), Gaps = 38/301 (12%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           + +IF  V ++S  ++A   ++  T  G  + +  I K        +    ++       
Sbjct: 4   LSVIFLSVSMLSGIAFADKDKVVATYKGGEVKESQIMKEFKPQLNLQSGETIKN------ 57

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
                                     ++   N  L  E+ +              +    
Sbjct: 58  --------------FDDFPPQDQEKLIKIYVNNLLLKEEVAKSNITSSKEFQEKLENAKN 103

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           Q    +++ N       +   +   NK         +  +  +L              QK
Sbjct: 104 QLAQQELLANYIKSNITDKMFDDEYNKYVGNLKGKEQIKVAHIL-----------VKSQK 152

Query: 201 RIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYL---LESDLHPQFQNLLKK-SQN 255
              + +    +        E+ +  K    + G   Y+       L P+F+        N
Sbjct: 153 EANNIKTKLSKGGNFTKLAEESSLDKASASNGGVIGYILLNQPGQLVPEFEKKAFALKVN 212

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             + P  T  G   I + +K+ +   I  K             +   +Y+  L + A + 
Sbjct: 213 EVSTPVKTDFGWHIIKVLEKKPVP--IPTKEEAKVTIDNILAAEVLKKYISDLEAKADLK 270

Query: 316 Y 316
            
Sbjct: 271 I 271


>gi|56419191|ref|YP_146509.1| post-translocation molecular chaperone [Geobacillus kaustophilus
           HTA426]
 gi|81675918|sp|Q5L289|PRSA_GEOKA RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|56379033|dbj|BAD74941.1| post-translocation molecular chaperone [Geobacillus kaustophilus
           HTA426]
          Length = 281

 Score = 89.7 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 85/304 (27%), Gaps = 41/304 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +  + +      +  +S  S   S  I  T NG  IT  +    +           + K 
Sbjct: 1   MKKWMMAAAVVSLMALSACSNDGSEAIVETKNGN-ITKDEFYNEMK--------ERVGKS 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +++LI E +  ++ + +    D                      +           + +
Sbjct: 52  VLRDLIDEKVLSKKYKVTDEEIDREIERI--------------KEAYGTQYDLAVQQNGE 97

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           + +        +     +      E E+       K      +++               
Sbjct: 98  KVIREMVKLDLLRTKAAVEDIKVTEKELKEYYDNYKPKIRASHIL--------------- 142

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              +K  K+ +    +        ++++       + G   +     +  +F+    K  
Sbjct: 143 VKDEKTAKEVKAKLDKGEDFSKLAKEYSQDPGSASNGGDLGWFGPGKMVKEFEEAAYKLK 202

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE-AEYVKKLRSNA 312
               ++P  T  G   I + DK        +K  ++ +    K++       V KL  +A
Sbjct: 203 VGEVSDPVKTDYGYHIIKVTDKEKKKSFNEMKDEIAFEVKRNKLDPATMQSKVDKLVKDA 262

Query: 313 IIHY 316
            +  
Sbjct: 263 GVEI 266


>gi|297569902|ref|YP_003691246.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925817|gb|ADH86627.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 630

 Score = 89.7 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/404 (10%), Positives = 101/404 (25%), Gaps = 95/404 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M S +         L+    V+II   +  V             T+N + I+  +  +R 
Sbjct: 1   MLSLLRRKARS--PLIQAAVVIIILVFILWVPQMGGNGDPGTVATVNDQPISTREFQRRY 58

Query: 61  ALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
             L  Q  +               L +  + +++ ETL  Q   K+G+   S  +     
Sbjct: 59  NDLLGQYRDQFEGAIPSELIEALGLREQVLSQMVQETLLLQSARKTGLPVSSEELQQAVQ 118

Query: 108 QH---ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN-------------- 150
                  N   S + +   L    +  + F+  L    +   ++++              
Sbjct: 119 SMGEFTENGQFSLQLYRQILAASRLSVHEFEAGLRTDLLRRKILEHLMGFAQVSDQEVRE 178

Query: 151 -------------------DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                              DF         EI A   +  +       +R      P + 
Sbjct: 179 RFHRDHDQVRLSYLYLRADDFRAAQDPTSEEIEAYFAEKDHRYRTPPQVRIDYLLFPADD 238

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCN---------------------------------- 217
            +     +  +   E++R R                                        
Sbjct: 239 TEMTIEEEDLVAYYEQNRDRFDTPEQRRARHILIRSRSDAPEETRARQRQQAETVQELAR 298

Query: 218 -------KLEKFASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEY 269
                      ++        G   +    ++  P  + +        ++   T  G   
Sbjct: 299 EGQDFRQLALLYSEDRSAEDGGDLGFFRRGEMLEPLEEAVFAMEPGEISDIVETSLGFHV 358

Query: 270 IAICDKRDLGGEI--ALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           I + + ++         +A +  +   ++  +       ++  +
Sbjct: 359 IKLEEIQEPQTITLAEAEAEIRREILRSRGRQMAFNRANEVYES 402



 Score = 39.3 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 6/68 (8%), Positives = 22/68 (32%), Gaps = 2/68 (2%)

Query: 243 HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKH 300
                +  + ++   ++   TQ G   I + ++ +  +     +   + A     +    
Sbjct: 439 PEAVSSAFELNRGELSSIISTQDGYAIIYVQEREEPQVPPLAEVLDRVRADLIEEQAAMA 498

Query: 301 EAEYVKKL 308
                ++L
Sbjct: 499 ARRAAEEL 506



 Score = 36.6 bits (82), Expect = 5.7,   Method: Composition-based stats.
 Identities = 27/296 (9%), Positives = 83/296 (28%), Gaps = 22/296 (7%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQ 88
            + + +   +S  + T++   VI   +I +    + L +   E+ +  ++       ++ 
Sbjct: 337 AVFAMEPGEISDIVETSLGFHVIKLEEI-QEPQTITLAEAEAEIRREILRS----RGRQM 391

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
              ++   ++S        + A   G+S +    F  +Q                  ++ 
Sbjct: 392 AFNRANEVYESILTTGSLARGAEEGGVSLQSTGLFTPEQPPAALRRHPEAVSS--AFELN 449

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
           + +        +       Q+ +   V               + Q     ++  ++   +
Sbjct: 450 RGELSSIISTQDGYAIIYVQEREEPQVPPLAEVLDRVRADLIEEQAAMAARRAAEELLAA 509

Query: 209 RLRLPKDCNKLEKFASKIHDVSIGKAQYLLE-----SDLHPQFQNL--LKKSQNNTTNPY 261
                   +             + ++ +  +     +DL  +          +N      
Sbjct: 510 LQEGQDLQHLAAAE-----GYRVRESAWFSQATAAATDLPARVARTGLTLTKENPVPGTV 564

Query: 262 VT-QKGVEYIAICDKRDLGGEIALK--AYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            +       I +  +R    E+  +    +       K E     +++ L   A I
Sbjct: 565 QSANDRFYVIKLQQRRTADEELFQRWAEPIENDLLMAKQEAMIDTWIQHLLQEAKI 620


>gi|153956391|ref|YP_001397156.1| foldase-related protein [Clostridium kluyveri DSM 555]
 gi|146349249|gb|EDK35785.1| Foldase-related protein [Clostridium kluyveri DSM 555]
          Length = 247

 Score = 89.7 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/282 (10%), Positives = 78/282 (27%), Gaps = 39/282 (13%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
           M + +   +N   IT+ D    +     ++          ++L+ E +  +     G   
Sbjct: 1   MQNNVLAIVNNVEITENDFKNVVKRFPAERQQYFNTDEGKKQLLDEIISFELFYNYGKEI 60

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
           +      + V+                           +    + +  + + +  M    
Sbjct: 61  ELEKDRDYLVKL--------------------------ETTKKELLIQETI-SKIMENIK 93

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             + E+       K++  +   I      +   +   Q   + +         +     +
Sbjct: 94  VTDKEVEDYYTNNKSMYKKPENITARHILVDSFEKAAQISNEIK---------KGLSFED 144

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR 276
             +K++S       G         + P+F+    +      + P  TQ G   I +  K 
Sbjct: 145 AAKKYSSCPSKAQGGNLGNFTRGQMVPEFETAAFQLEIGILSKPVKTQFGYHLIKVEKKE 204

Query: 277 D--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
              + G   +K  +       K     ++ +  L+    I  
Sbjct: 205 KDSIKGFDKVKNAIKNGLLQEKRTLEYSKCINNLKDKYPIEI 246


>gi|282882421|ref|ZP_06291048.1| foldase protein PrsA [Peptoniphilus lacrimalis 315-B]
 gi|281297741|gb|EFA90210.1| foldase protein PrsA [Peptoniphilus lacrimalis 315-B]
          Length = 249

 Score = 89.7 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 84/284 (29%), Gaps = 47/284 (16%)

Query: 40  SRIRTTINGEVITDGDISKRIAL----LKLQKINGELEKIAVQELIVETLKKQEIEKSGI 95
           ++I   +NG+ IT  D +  I      L+   +N +  K  ++ELI   L  Q+  ++G 
Sbjct: 4   NKILAEVNGKKITGEDYNIFINSINPKLREHLVNSDQNKEVIEELIHHELIYQDAIENGK 63

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
             +                                        A +S+  +      +  
Sbjct: 64  DKEEEF-------------------------------QKVLDQAKKSLLLNYTLGKLLSN 92

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
               E EI       K    ++  +R     + D          K+ ++           
Sbjct: 93  IEVTEKEIEDFYNNHKEHFTKDQTVRASHILVDD---------LKKAEEIYNRIKDGADF 143

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICD 274
             + +  ++     + G      +  +  +F++          + P  TQ G   I + +
Sbjct: 144 SKEAKNNSTCPSKENGGDLGIFSKGQMVKEFEDACFNMEVGEVSKPVKTQFGYHIIKLVE 203

Query: 275 KRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           K           + ++       K ++   + +  LR  + I Y
Sbjct: 204 KNKAQEMTLEESRDHIIEDIRRQKEQEIYKDKISSLREKSQIKY 247


>gi|294085490|ref|YP_003552250.1| PPIC-type PPIASE domain-containing protein [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665065|gb|ADE40166.1| PPIC-type PPIASE domain protein [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 278

 Score = 89.7 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/305 (10%), Positives = 83/305 (27%), Gaps = 45/305 (14%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           ++++   F  I+  I   +++    +S     T+NGE I    + +    L  +  N  +
Sbjct: 1   MQVILRSFCAILMLIFATMAHAESRIS---VATVNGETIWLDQVMQAAEGLPPEYRNKPM 57

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +                                 V    +T L+A+   +          
Sbjct: 58  QD---------------------------YFGDIVADIIDTKLAAKAGEAAKLADDPLVQ 90

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
              +  + + +    +      K  +  ++   +       +  +     +L        
Sbjct: 91  DAMKLASERILAEAWLAVTVREKMTDEALQQAYDTFVADEASREQITASHIL-------- 142

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
                 +       +S           ++ ++     + G+        + P F+     
Sbjct: 143 ---VAAEDDAVAIIKSLNDGADFAEIAKEKSTGPSGPNGGELGTFGRGQMVPAFETAAFA 199

Query: 253 SQ-NNTT-NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
                 +  P  TQ G   I + +K            +  Q   +   +H    ++ LR+
Sbjct: 200 LPAGGFSAKPVQTQFGWHVIKVSEK--AVKPAPSFDAMRDQLVNSLSRQHLGRVIESLRA 257

Query: 311 NAIIH 315
           +  I 
Sbjct: 258 DQTIE 262


>gi|229132060|ref|ZP_04260923.1| Foldase protein prsA 2 [Bacillus cereus BDRD-ST196]
 gi|228651460|gb|EEL07432.1| Foldase protein prsA 2 [Bacillus cereus BDRD-ST196]
          Length = 285

 Score = 89.7 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/304 (11%), Positives = 81/304 (26%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
            + F++     + ++S       S    T     IT  D  K+   LK +     L ++ 
Sbjct: 4   KSTFIITALISILMLSACGQKNDSATIATTTNSTITKSDFEKQ---LKDRYGKDTLYEMV 60

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
            Q++I +  K             + V+    +     G        F           ++
Sbjct: 61  AQDVITKKYK----------VSDDAVDKEVEKAKDQYG------EQFKATLENNRLKDEE 104

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 105 DFKNQIKFKLALNEAIKQSVTEKDVKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ ++            ++ +       + G   Y     + P+F+    K   
Sbjct: 145 SNENEAKEIKKKLDTGTSFEELAKQESQDLASKDNGGDLGYFGAGKMTPEFEKAAYKLKP 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE--AEYVKKLRSNA 312
              +NP  +  G   I + DK+DL     +K  +       ++       + ++     A
Sbjct: 205 GQISNPVKSPNGYHIIKLTDKKDLQPYDKVKDSIRKDLEEERLADPSFGQKLLQDELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 DIKI 268


>gi|253996058|ref|YP_003048122.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera
           mobilis JLW8]
 gi|253982737|gb|ACT47595.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera
           mobilis JLW8]
          Length = 262

 Score = 89.7 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 48/301 (15%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVI--TDGDISKRIALLKLQKINGELEKIAVQ 78
           ++     V ++S    A ++    T+NG+ +  +  D+  +      QKI+   +   + 
Sbjct: 3   LIQTLIAVAVLSMTPSAFAADALATVNGKPVKQSLYDVIVKDVTANGQKIDANTKAAIID 62

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
           EL+   L  QE ++ G+   ++ V    +   +                           
Sbjct: 63  ELVSSELVYQEAQRLGLDKQADYVAREELGSRK--------------------------- 95

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
               +    +++       +      A ++       +EY  R +L              
Sbjct: 96  ---LLTSMFLQDYVKKHPVSDADTKAAYEKYKTAYGDKEYSARHIL-----------VKT 141

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNT 257
           +   KD      +        ++ +         G   +   + +   F +++   Q   
Sbjct: 142 EAEAKDIIAQLGKGGDFAKIAKEKSLDPGSKEKGGDLGWFSPATMVKPFSDVVANLQKGA 201

Query: 258 TN--PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           T+  P  TQ G   I + D R           L         + +  + +  LR+ A I 
Sbjct: 202 TSASPVQTQFGWHVIKLVDTRPAQP--LPYEKLKDGIQKNLQQHNLEKLMSDLRAKAKID 259

Query: 316 Y 316
            
Sbjct: 260 I 260


>gi|188995416|ref|YP_001929668.1| putative peptidyl-prolyl cis-trans isomerase [Porphyromonas
           gingivalis ATCC 33277]
 gi|188595096|dbj|BAG34071.1| putative peptidyl-prolyl cis-trans isomerase [Porphyromonas
           gingivalis ATCC 33277]
          Length = 460

 Score = 89.7 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/305 (8%), Positives = 85/305 (27%), Gaps = 17/305 (5%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--GELE 73
           +    +++      + S     +   +   +  E I   DI      L        G  +
Sbjct: 6   MRICIIMLSLLFWALPSMGQKNVIDEVVWMVGDEPILRSDIEATKRFLLSSGRPLEGNAD 65

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
               +++ V+ L   + +   I  +   VN +   +  +            +        
Sbjct: 66  CYIPEQIAVQKLFLNQAKIDSIEVNEADVNRYVDMYLADYIQQFGSKEKMEEYFNRKYTQ 125

Query: 134 FKQYLAIQSIWP---DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF----S 186
            ++   ++        +++            EI      +   ++        +      
Sbjct: 126 IREEQRVEVRNSEIVRMMRKKIDENVKVTPSEIRQYFASLPQDSLPYIPTTVEVQLLAIK 185

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQ 245
              +  +     ++  + ++E              ++      +  G+  ++ ++ L  +
Sbjct: 186 PVISLHETDAIKKRLREFSDEINEGRRDFTTLARLYSEDSKTALQGGEYGFVSKASLDAE 245

Query: 246 FQNLLKKSQN--NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAE 303
           F  ++    +    +    T  G   + + +KR   G++     +     P   +    E
Sbjct: 246 FARVVFSLTDTKRVSPIIKTDDGYHIVQLIEKR---GDVINFRQIV--LKPKVSDAALTE 300

Query: 304 YVKKL 308
              KL
Sbjct: 301 TTNKL 305


>gi|238026987|ref|YP_002911218.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia glumae
           BGR1]
 gi|237876181|gb|ACR28514.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia glumae
           BGR1]
          Length = 259

 Score = 89.7 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 83/278 (29%), Gaps = 48/278 (17%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKIN--GELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I    +   +A L  Q      +L K   QEL+   +  QE  K G+    +
Sbjct: 25  VAVVNGTPIPKARVDAMVAQLVQQGQPDSEQLRKKVSQELVNREILMQEAIKEGVPNRPD 84

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q++    +  DF+ K    +
Sbjct: 85  VKQQV-------------------------------AIAQQAVVLRAMIEDFVKKNQPSD 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            +I A   ++             +              ++  K+         K  +  +
Sbjct: 114 ADIKARYDELTKSVSGNEYHLHHILVDN----------EQLAKELIAKIKAGAKFEDLAK 163

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTN-PYVTQKGVEYIAICDKRD 277
           +++       + G   +       P+F N      +   T+ P  TQ G   I + D R 
Sbjct: 164 QYSKDPGSAKNGGDLDWADPKSFVPEFANAATHLQKGQMTDTPVKTQFGWHIIRVDDVRP 223

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +         + AQ     +++    + +KLR+ A I 
Sbjct: 224 VAP--PPLDQVKAQIAQQIVQQKLQAFEEKLRAQAKIQ 259


>gi|84500986|ref|ZP_00999221.1| PPIC-type PPIASE domain protein [Oceanicola batsensis HTCC2597]
 gi|84391053|gb|EAQ03471.1| PPIC-type PPIASE domain protein [Oceanicola batsensis HTCC2597]
          Length = 402

 Score = 89.7 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 101/284 (35%), Gaps = 5/284 (1%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIE 91
           +  + A S      +N +V+T+ ++ +R  +L+L +  G+++ +A  +LI + L+ Q  E
Sbjct: 17  AQFAAAQSFSPAIKVNDKVVTEFELDQRTRMLRLFRTPGDIDALAADQLIDDRLRMQAAE 76

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
           + GI+   + +     + A    LSAE F + L + G+    F+ ++     W + ++  
Sbjct: 77  EIGISPSEDQIMAGMEEFAGRANLSAEQFVAALQQAGVAPESFRDFVRAGVAWRETIRAR 136

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
           F  +    E +I                   VL S     L      + R        + 
Sbjct: 137 FGPRIQISEQQIDRALASGGASGASV----QVLMSEIFLPLTPGAEDETRALAQRIRGMS 192

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYI 270
                    + +S     + G+  ++  S+L PQ ++++        + P      +   
Sbjct: 193 AEAFARAAREHSSAPSAGAGGRVNWVPVSNLSPQLRSVILGLRPGQISEPVELDGQLALF 252

Query: 271 AICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            +    +        A +          +      +  R  A +
Sbjct: 253 LLRAVEETENRAPSYAAVEYAAYYIAGGRSAQALERAARVRAQV 296



 Score = 42.7 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 9/86 (10%), Positives = 26/86 (30%), Gaps = 3/86 (3%)

Query: 235 QYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKG--VEYIAICDKRDLGGEIALKAYLSAQ 291
                 ++         +      +       G  + ++ +C +         +  ++  
Sbjct: 317 GTRAPGEIPEDIAAELAQLDPGEVSTALTRSNGQTLVFLMLCGRSFDVSGAVSREGVALD 376

Query: 292 NTPTKIEKHEAEYVKKLRSNAIIHYY 317
               ++      Y+++LRS A I  Y
Sbjct: 377 IQNQRLASFAQGYLQQLRSEARIVRY 402


>gi|294339748|emb|CAZ88110.1| putative Peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase
           D) PpiD [Thiomonas sp. 3As]
          Length = 640

 Score = 89.7 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 47/405 (11%), Positives = 98/405 (24%), Gaps = 103/405 (25%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK-- 58
           M   +    S  ++++    +   F +  I  Y S+  S+     + G+ I+   +    
Sbjct: 1   MLESIRKH-SKLMQIVLFVLIFPSFVLFGIQGYSSFEGSADAAAKVGGQTISMQQLDAAN 59

Query: 59  --RIALLK---------LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
              IA L+          Q    E +   +  +I +TL + E  +  +      V    +
Sbjct: 60  RDEIARLQSMLGSAVDIKQLDTPEQKLRTLDGMIRQTLLQLEARREHLEVTDAQVQQAIL 119

Query: 108 QHAR-------NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK----------- 149
           Q  +       +     + + S +  QG+    F+  +  Q I   V+            
Sbjct: 120 QIPQIAALRKPDGSFDVQAYRSLIAAQGMNTAQFEAQVREQLILQQVLSGLAGSVIDSQA 179

Query: 150 ----------------------NDFMLKYGNLEMEIPANKQKMKNITVR----------- 176
                                  D+  +      E+    +       +           
Sbjct: 180 LATAAAKAAAQQRVVRLALFKPADYTAQVQVTPQEVETFYKNNTARFQKPESADIQYVVL 239

Query: 177 ------------------EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
                              Y      FS P  +  +   +          + +       
Sbjct: 240 SAAEVAAGIKVTAEQAKAFYDANLSKFSTPAERRASHILIAVPTDATAAQQEQAKARAEA 299

Query: 219 LEKFASKI----------------HDVSIGKAQYLLESDLHPQFQN--LLKKSQNNTTNP 260
           + K                          G   Y     +   F +     +       P
Sbjct: 300 IAKQVKANPAEFPALARKDSQDPGSAEKGGDLGYFTADAMVKPFADAVFGMQKIGEIAGP 359

Query: 261 YVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAE 303
             TQ G   I +   +        A+KA +  Q      +K  + 
Sbjct: 360 IKTQFGYHIIELTGIKPGAQQPFDAVKASIEKQLQQEAAQKQMSA 404


>gi|317485995|ref|ZP_07944850.1| ppic-type ppiase domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316922768|gb|EFV43999.1| ppic-type ppiase domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 629

 Score = 89.7 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/403 (10%), Positives = 97/403 (24%), Gaps = 98/403 (24%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +   +    ++++F    +         S +  T+NGE IT  +  ++ 
Sbjct: 1   MLDLIRANAQSWGVKIAFGIIILVFVFWGVGGLTGG--PSTVILTVNGEPITIQEFQRKY 58

Query: 61  ALLKLQKING------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
             L+ Q                +L++  +Q LI+E L  QE ++ GI      +      
Sbjct: 59  EQLEQQVRAQYPDLDAAGLKAMQLKQQLIQNLILENLIMQEAKRVGIVVTPVELRKLIES 118

Query: 109 HARNTG----LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK--------------- 149
                        + +   +  Q     +F+  L    +   +                 
Sbjct: 119 FPAFHNAEGKFDPDAYVRVIKAQRNTPGNFEAELRNNMLMNKLRADVTAGAFVPEAEVRD 178

Query: 150 ------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV-------- 183
                              D+  K    + +I    +  +                    
Sbjct: 179 LFRYEGERRILEYVFYPLEDYTSKVTVDDAQIKDYYEANQASFTVPPQADVEYLLIGAEA 238

Query: 184 ----LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS--------- 230
                        +       +    E  R R     +  +  A                
Sbjct: 239 LAAAQNISDAAVSEYYEKNAAQFATPEMVRARHILILSDAKASAEDQAKAKAKIEEIAKR 298

Query: 231 ---IGKAQYLLE--------------------SDLHPQF-QNLLKKSQNNTTNPYVTQKG 266
                    + +                      + P+F +     +    + P  TQ G
Sbjct: 299 IKAGEDFGEVAKEVSEDPGSGPQGGELGWFAHGQMVPEFDKASFALNPGELSEPVKTQFG 358

Query: 267 VEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
              I + +K+         +K  +  +    +      E +++
Sbjct: 359 WHLIQLEEKKAAGQKPLDEVKDQIRTRLAQDEASGKVQEALEQ 401


>gi|121602142|ref|YP_988681.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Bartonella bacilliformis KC583]
 gi|120614319|gb|ABM44920.1| PPIC-type PPIASE domain protein [Bartonella bacilliformis KC583]
          Length = 315

 Score = 89.7 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/290 (11%), Positives = 76/290 (26%), Gaps = 48/290 (16%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISK---RIALLKLQKINGELEKIAVQELIVETLKKQ 88
           + +     S +  TI+G+ IT G + +    I    ++  + +     ++  +   +  +
Sbjct: 41  ASEKPVDPSHVMATIDGKNITAGQLDELALEINPNLVRIPDEQRRITVLRAYLDMQVLAK 100

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
              +  I                                          +    +     
Sbjct: 101 AAIQENIHKTEAYDKR------------------------------MAVMRDNILQQLYF 130

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
           K   + K  + +++I  +K+        E   R +L              +K  +   + 
Sbjct: 131 KQMVVDKITDGDLKILYDKEVAALPKEDEVKARHIL-----------VKTKKEAQAIIKR 179

Query: 209 RLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKG 266
             +        +K ++       G   Y     +   F++          T  P  +  G
Sbjct: 180 LKKGENFEEIAKKDSTDGSAAVGGDLGYFSYGQMVKPFEDAAFSLKVGEYTKNPVESPFG 239

Query: 267 VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
              I + D+R                    I+    + +  LRS   + Y
Sbjct: 240 WHIIKVEDRRLKQP--PEFDDAKEVLRAQIIKDRYQQLIADLRSKIDVKY 287


>gi|320162050|ref|YP_004175275.1| hypothetical protein ANT_26490 [Anaerolinea thermophila UNI-1]
 gi|319995904|dbj|BAJ64675.1| hypothetical protein ANT_26490 [Anaerolinea thermophila UNI-1]
          Length = 303

 Score = 89.3 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/282 (10%), Positives = 69/282 (24%), Gaps = 48/282 (17%)

Query: 43  RTTINGEVITDGDISKRIALLK-------LQKINGELEKIAVQELIVETLKKQEIEKSGI 95
              +NGE +   +    +  L+       L     E  ++ + +LI  TL  Q   K G 
Sbjct: 57  VLVVNGEGVPLAEYEASLKQLQEAQAQMGLTSTPEEQRRMVLDDLIAATLLAQAAFKEGF 116

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
           T D   +       A   G  +   +          +          +    +++    +
Sbjct: 117 TLDDAALEEQIAALAEQRGGMSALQNWMTRMGYDEVSFRSALRRS--LAAAWMRDTIAAQ 174

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
                 ++                 R +L   P+   Q    ++                
Sbjct: 175 VPERAEQV---------------HARQILLMTPETAQQVLNQIRA--------------- 204

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDL--HPQFQNLLKKSQNNTTNPYVTQKGVEYIAIC 273
                  A      + G   +     L      +          +    T+ G   + + 
Sbjct: 205 GANFATLAFGYDLTTGGDLGWFPRGYLTQPAVEEAAFALQPGEVSEIIQTELGYHILQVL 264

Query: 274 DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           ++               +       K    ++++ R+ A I 
Sbjct: 265 ERETDRLLSPDARLTLQR-------KALEAWLQQARTQAQIE 299


>gi|114563758|ref|YP_751271.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           frigidimarina NCIMB 400]
 gi|114335051|gb|ABI72433.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           frigidimarina NCIMB 400]
          Length = 625

 Score = 89.3 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/407 (9%), Positives = 96/407 (23%), Gaps = 95/407 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+       +       V++ F    + SY            +NG+ I   ++ +  
Sbjct: 1   MLEKIREGSQGIVAKTILVLVILSFAFAGVSSYLGSNTGVP-AAVVNGDEIGANELEQAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     +++  +  LI + L  Q   K G+      +  
Sbjct: 60  QNERSRIEQQLGEMFTALAADDSYMNGIKQGVLDRLIADKLIDQAANKLGLRVSDEQIKK 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNH---FKQYLAIQSIWPDVVKND---------- 151
             ++          D   +L            F+  + +      ++             
Sbjct: 120 AIIEEPAFQTDGQFDNERYLAVLRQLGYQTTSFRNMMRVDMTRRQLLNALVGSEFVLDGE 179

Query: 152 -----------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRT------ 182
                                  F+      + E  +      +  +    +        
Sbjct: 180 AKQLAEVQGQTRDIRYLVVDSTPFLSTVSVADEEAQSYYDANISQYMSPEKVSLEYVELN 239

Query: 183 -------------VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA------ 223
                         + +  +         +KR+              +K +  A      
Sbjct: 240 VADMAKSSETSDEEVKTYYEENKAQYQTAEKRLAAHIFVAATDDDSADKAKADAIEAKLT 299

Query: 224 --------------SKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVE 268
                          ++     GK  +  +  + P F + L    ++  ++   ++ G  
Sbjct: 300 AGEDFADVAKADSDDQLSAQQGGKLDWFEQGVMDPAFDEALFGLQKDQVSSIVKSEFGYH 359

Query: 269 YIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            I + D +         +KA + AQ    K          KL   + 
Sbjct: 360 IIKLLDLQASQATAFENVKAKIVAQLQEKKALDVFYSLQTKLADTSY 406


>gi|28209963|ref|NP_780907.1| peptidylprolyl isomerase [Clostridium tetani E88]
 gi|46396876|sp|Q899I2|PRSA_CLOTE RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|28202398|gb|AAO34844.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium tetani
           E88]
          Length = 339

 Score = 89.3 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/330 (10%), Positives = 93/330 (28%), Gaps = 16/330 (4%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDIS---- 57
              +  +   F  LL      +      ++     A+       +  + IT G++     
Sbjct: 1   MKHLKNNTKKFTALLFALLFSMSIAGCNMIEKTPEAIEKSPVAKVGKKTITRGELDTYPI 60

Query: 58  --KRIALLKLQKINGELEK-IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
             +++  LK Q      +      +LI    +  E           +             
Sbjct: 61  LAEQLTKLKEQFGGDLSKNAEIKDQLIQFKSQVLEQMIQEEIVFEKSEELKVDNAKVEKE 120

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
           +     +          + +K+ L       + +K  F  +    E+     K    +  
Sbjct: 121 VEKNLKNFMDQGFQGNKDKYKEDLKKMGTTEESIKRFFKAQVITEEVSKQVVKDVKVDDN 180

Query: 175 VREYLIRTVLFSIPDNKLQNQGF-----VQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
             +       ++   NK            ++  K  +    +        ++ +      
Sbjct: 181 TAKKHYEESKYTFTVNKPTFHAQHVLVKTEEEAKKVKARLDKGEDIKKIAKELSIDPSAK 240

Query: 230 -SIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALK 285
            + G       S +   F + + K ++   + P  +Q G   I + DK ++      ++K
Sbjct: 241 ENSGDLGKAPYSSMVKPFADAIVKLNKGEISQPVKSQFGYHVIKLIDKDEVTFKDFNSVK 300

Query: 286 AYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             +      T+  K   E +++ +    + 
Sbjct: 301 EQIKKDLLETEKRKVFNEKIEQWKKELKVE 330


>gi|253681295|ref|ZP_04862093.1| foldase protein PrsA [Clostridium botulinum D str. 1873]
 gi|253562533|gb|EES91984.1| foldase protein PrsA [Clostridium botulinum D str. 1873]
          Length = 348

 Score = 89.3 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/344 (9%), Positives = 91/344 (26%), Gaps = 33/344 (9%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK------- 58
             ++   +         +      ++     A+   +   +    IT G++         
Sbjct: 1   MKNIRKLVATAVLCIFTMSAVGCSMIEKTPEAIKKTVVAKVGDRKITKGELDSHFGVKRY 60

Query: 59  ----------------RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
                           +I     Q      ++IA QE + +  ++ ++  +         
Sbjct: 61  LDQFKQQYGENFEQNPQIKEQVKQIKIAVAKQIASQEALKQEAERLKLVPNDQELKKEID 120

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                          +     L   G+  + F+  +    I   + +N+        + E
Sbjct: 121 KKTEEFKKEQHIKDNKGLDEALKMSGLQKSDFENIIKDNIIIEKL-QNELTKNIKVDDKE 179

Query: 163 IPANKQKMKNITVREYLI----RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
           I     K K+   ++             +     ++    +  IK  +E   +       
Sbjct: 180 IEKYYNKNKDNYPKDPKNPTKIHVAHIILKVKTPEDDAKAKDEIKSIKEELNKGADFAVL 239

Query: 219 LEKFASKIHDVSIGKAQY---LLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK 275
            +K++      + G       +            L       ++P  TQ G   I +  +
Sbjct: 240 AKKYSQDGSKDNGGDLGTVPAINSKFDQDFMNAALTLKDGEISDPVKTQFGYHIIKMIKR 299

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            +        +K  +       K  +      K+++  A +  +
Sbjct: 300 EEAPCKTFAEVKNQVKEDILQNKKSEVINNKFKEIQDKASLKIF 343


>gi|221198202|ref|ZP_03571248.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           multivorans CGD2M]
 gi|221208305|ref|ZP_03581308.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           multivorans CGD2]
 gi|221171718|gb|EEE04162.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           multivorans CGD2]
 gi|221182134|gb|EEE14535.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           multivorans CGD2M]
          Length = 260

 Score = 89.3 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 84/278 (30%), Gaps = 47/278 (16%)

Query: 43  RTTINGEVITDGDISKRIALL--KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I        +A L  + Q  + +L++   QEL+   +  QE  + GI    +
Sbjct: 25  IAVVNGTPIPKSRADAMVAQLVQQGQTDSPQLQQAVRQELVNREILMQEAIREGIPNRPD 84

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q++    +  +F+ K    +
Sbjct: 85  VKAQV-------------------------------AVAQQTVVLRAMIENFLKKNQPTD 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+ A   ++                +   +       + +            K  +  +
Sbjct: 114 AEVKARYDELVKTAGGNREYHLHHILVDSEQQAKDLIAKIK---------GGAKFEDLAK 164

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT-NPYVTQKGVEYIAICDKRD 277
           +++       + G   +       P+F    +K  +   T  P  TQ G   I + D RD
Sbjct: 165 QYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDEPVKTQFGWHIIRVDDIRD 224

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +       A + AQ     +++    + + LR  A I 
Sbjct: 225 VAP--PPFAQVKAQIAQQLVQQKLQTFEETLRQQAKIQ 260


>gi|15892803|ref|NP_360517.1| protein export protein prsA precursor [Rickettsia conorii str.
           Malish 7]
 gi|20138841|sp|Q92H91|PLP_RICCN RecName: Full=Parvulin-like PPIase; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase plp; AltName: Full=Rotamase plp;
           Flags: Precursor
 gi|15619985|gb|AAL03418.1| protein export protein prsA precursor [Rickettsia conorii str.
           Malish 7]
          Length = 282

 Score = 89.3 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 82/301 (27%), Gaps = 38/301 (12%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           + +IF  V ++S  ++A   ++  T  G  + +  I K        +    ++       
Sbjct: 4   LSVIFLSVSMLSGIAFADKDKVVATYKGGEVKESQIMKEFKPQLNLQSGETIKN------ 57

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
                                     ++   N  L  E+ +              +    
Sbjct: 58  --------------FDDFPPQDQEKLIKIYVNNLLLKEEVAKSNITSSKEFQEKLENAKN 103

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           Q    +++ N       +   +   NK         +  +  +L              QK
Sbjct: 104 QLAQQELLANYIKSNITDKMFDDEYNKYVGNLKGKEQIKVAHIL-----------VKSQK 152

Query: 201 RIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYL---LESDLHPQFQNLLKK-SQN 255
              D +    +        E+ +  K    + G   Y+       L P+F+        N
Sbjct: 153 EANDIKTKLSKGGNFTKLAEELSLDKASASNGGVIGYILLNQPGQLVPEFEKKAFALKVN 212

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             + P  T  G   I + +K+ +   I  K             +   +Y+  L + A + 
Sbjct: 213 EVSTPVKTDFGWHIIKVLEKKPVP--IPTKEEAKVTIDNILAAEVLKKYIADLEAKANLK 270

Query: 316 Y 316
            
Sbjct: 271 I 271


>gi|221215070|ref|ZP_03588037.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           multivorans CGD1]
 gi|221165006|gb|EED97485.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           multivorans CGD1]
          Length = 260

 Score = 89.3 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 85/278 (30%), Gaps = 47/278 (16%)

Query: 43  RTTINGEVITDGDISKRIALL--KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I        +A L  + Q  + +L++   QEL+   +  QE  + GI    +
Sbjct: 25  IAVVNGTPIPKSRADAMVAQLVQQGQTDSPQLQQAVRQELVNREILMQEAIREGIPNRPD 84

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q++    +  +F+ K    +
Sbjct: 85  VKAQV-------------------------------AVAQQTVVLRAMIENFLKKNQPTD 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+ A   ++                            +++ K+         K  +  +
Sbjct: 114 AEVKARYDELVKTAGGNREYHLHHIL---------VDSEQQAKELIAKIKGGAKFEDLAK 164

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT-NPYVTQKGVEYIAICDKRD 277
           +++       + G   +       P+F    +K  +   T  P  TQ G   I + D RD
Sbjct: 165 QYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDEPVKTQFGWHIIRVDDIRD 224

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +       A + AQ     +++    + + LR  A I 
Sbjct: 225 VAP--PPFAQVKAQIAQQLVQQKLQTFEETLRQQAKIQ 260


>gi|115525459|ref|YP_782370.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisA53]
 gi|115519406|gb|ABJ07390.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisA53]
          Length = 353

 Score = 89.3 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/289 (11%), Positives = 81/289 (28%), Gaps = 32/289 (11%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA-VQELIVETLKK 87
              +      +  +   +    +T  D+  +IA L  Q+     +  A + +L+   L  
Sbjct: 72  SSATKSMGKNAGDVVARVGDTDVTADDLRAQIAALGPQEQAALAKDPAQLSQLVRMLLAN 131

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           Q +    I    +                                   + +   ++    
Sbjct: 132 QLVLDEVIEKKWDQRPNVV--------------------------KQLERVRESAVVELY 165

Query: 148 VKNDFMLKYGNL-EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           +++          E EI       +   V     +     I   K  ++    K  K  E
Sbjct: 166 LQSVSTPPDSYPGEDEIQKVYDANRGQLVVPRQYQLSQIFIASPKDADKATEDKARKKLE 225

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIG-KAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQ 264
           + + +L          A +  D         + E+ L P+ ++ +   ++   ++P    
Sbjct: 226 DIQKKLKAPGADFAAIAGEESDAKGSADLGSIPENQLIPEIRSHVVGLAKGAVSDPIRLD 285

Query: 265 KGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            G   + + D +         ++  L+ Q    +       Y+ +L   
Sbjct: 286 AGWHIVKLTDTKASYTRTLPEVRDQLAQQMRKERAAALRRGYLAELLKQ 334


>gi|238650638|ref|YP_002916490.1| protein export protein prsA precursor [Rickettsia peacockii str.
           Rustic]
 gi|238624736|gb|ACR47442.1| protein export protein prsA precursor [Rickettsia peacockii str.
           Rustic]
          Length = 282

 Score = 89.3 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 81/301 (26%), Gaps = 38/301 (12%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           + +IF  V ++S  ++A   ++  T  G  + +  I K        +    ++       
Sbjct: 4   LSVIFLSVSMLSGIAFADKDKVVATYKGGEVKESQIMKEFKPQLNLQSGETIKN------ 57

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
                                     ++   N  L  E+ +              +    
Sbjct: 58  --------------FDDFPPQDQEKLIKIYVNNLLLKEEVAKSNITSSKEFQEKLENAKN 103

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           Q    +++ N       +   +   NK         +  +  +L              QK
Sbjct: 104 QLAQQELLANYIKSNITDNMFDDEYNKYVGNLKGKEQIKVAHIL-----------VKSQK 152

Query: 201 RIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYL---LESDLHPQFQNLLKK-SQN 255
                +    +        E+ +  K    + G   Y+       L P+F+        N
Sbjct: 153 EANYIKTKLSKGGNFTKLAEELSLDKASASNGGVIGYILLNQPGQLVPEFEKKAFALKVN 212

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             + P  T  G   I + +K+ +   I  K             +   +Y+  L + A + 
Sbjct: 213 EVSTPVKTDFGWHIIKVLEKKPVP--IPTKEEAKVTIDNILAAEVLKKYIADLEAKANLK 270

Query: 316 Y 316
            
Sbjct: 271 I 271


>gi|254975855|ref|ZP_05272327.1| putative protein export chaperone [Clostridium difficile QCD-66c26]
 gi|255093242|ref|ZP_05322720.1| putative protein export chaperone [Clostridium difficile CIP
           107932]
 gi|255307280|ref|ZP_05351451.1| putative protein export chaperone [Clostridium difficile ATCC
           43255]
 gi|255314984|ref|ZP_05356567.1| putative protein export chaperone [Clostridium difficile QCD-76w55]
 gi|255517659|ref|ZP_05385335.1| putative protein export chaperone [Clostridium difficile QCD-97b34]
 gi|255650769|ref|ZP_05397671.1| putative protein export chaperone [Clostridium difficile QCD-37x79]
 gi|260683854|ref|YP_003215139.1| putative protein export chaperone [Clostridium difficile CD196]
 gi|260687514|ref|YP_003218648.1| putative protein export chaperone [Clostridium difficile R20291]
 gi|306520675|ref|ZP_07407022.1| putative protein export chaperone [Clostridium difficile QCD-32g58]
 gi|260210017|emb|CBA64063.1| putative protein export chaperone [Clostridium difficile CD196]
 gi|260213531|emb|CBE05267.1| putative protein export chaperone [Clostridium difficile R20291]
          Length = 380

 Score = 89.3 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/298 (9%), Positives = 84/298 (28%), Gaps = 16/298 (5%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQE----LIVETL 85
           + +      SS +  TI  + IT   + KR+  L        +    ++     +I   +
Sbjct: 78  LPATSKHYNSSEVVATIGDKKITGEMLRKRMEPLFYLNAKTTMTDDEIRSYESNMIETMI 137

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
               +         +  N        N   S E       ++ +      +      +  
Sbjct: 138 TSDILSSEAAKEKISITNDQLDAQYNNLMSSIESAMGMTKEEFLKQFDLTEKYIKDDMKK 197

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK-----LQNQGFVQK 200
           ++V + ++ +   +  +   N          +     +L    D+K        +  ++K
Sbjct: 198 ELVASKYLNEKSKVTDKEAENYYNKNKSNYLQVRASHILIKTVDDKGKQVSSSKKAELKK 257

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT- 258
             ++  +            +K++      S G   +  +  +   F+       +   + 
Sbjct: 258 EAEEILKKAQAGEDFATLAKKYSEDSSAESGGDLGFFGKGQMVESFEKAAFALKKGEVSN 317

Query: 259 NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
               +  G   I   D++           + +    +   + +   ++ L+    +  
Sbjct: 318 KLVESDYGYHIIKKTDEKYQP-----FEEVKSDLVSSLTSEKQNLLIQNLKEKYNVKI 370


>gi|323706239|ref|ZP_08117806.1| PpiC-type peptidyl-prolyl cis-trans isomerase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534403|gb|EGB24187.1| PpiC-type peptidyl-prolyl cis-trans isomerase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 301

 Score = 89.3 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/287 (9%), Positives = 78/287 (27%), Gaps = 18/287 (6%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQ--KINGELEKIAVQELIVETLKKQEIEK 92
           S  ++  I   ++G+ IT  +       +K Q        + I  Q    +         
Sbjct: 21  SCGVNKNIVAKVDGQDITLKEYQDSFNQVKAQIESDPQYTKDIWNQNYNEQKFIDVVENS 80

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
                    +     +  + T    E    +  ++       K+      +   +V +  
Sbjct: 81  VLDNLILEKLLLKEAEKEKFTAKDKEITDEYSAEKATNSKVTKEMAKDNVLINKLVDSW- 139

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
                  + E        K+          ++              +K   +  +  ++ 
Sbjct: 140 TKNVKVTDSEALKYYNDNKSQFEVVKASHILVSD------------EKTANEIYDKLMKG 187

Query: 213 PKDCNKLEKFASKIH-DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
               +  ++++       + G+        +  +F++          + P  TQ G   I
Sbjct: 188 ANFADLAKQYSIDTSTKDNGGELGEFTRGTMVKEFEDAAFALKPGEISKPVKTQYGYHII 247

Query: 271 AICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
              + +        K+ + +     K +    +  + L+  A I  +
Sbjct: 248 K-SEAKYTKSFDEAKSSIISYLENNKKQDIFNQKSEALKKAAKIEKF 293


>gi|237752063|ref|ZP_04582543.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376630|gb|EEO26721.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 271

 Score = 89.3 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 45/300 (15%), Positives = 96/300 (32%), Gaps = 42/300 (14%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK---LQKINGELEKIAVQE 79
           I+   V   +    A  ++    +NG  ITD DI+  +  +      ++  E +   + +
Sbjct: 4   ILASSVIAFALLQGASFAKTYAEVNGADITDRDIATLMRAMPGVAFDQLPSEAKTQVINQ 63

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
            I   L  ++ +K  +                                            
Sbjct: 64  AIERKLLIEQAKKEKVQNSKEYKEAVASV------------------------------- 92

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
            + +  ++     M K   L+ EI     + K+  V+   I+     +           +
Sbjct: 93  EEDLMLEIWMRKQMDKVKVLDSEITKFYNENKSKFVQPETIKASHILVTSESEAKAIIAE 152

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN--T 257
            +    +  +    K  +   + +      + G+  Y+ ++ + P+F N   K Q    T
Sbjct: 153 LK----KAGKNVAGKFDSLAREKSKDGSAQNGGELGYIAKNQVVPEFANAAFKLQKGAYT 208

Query: 258 TNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           T P  +Q G   I + DK+  G      +K  +       K ++   +  ++LR  A I 
Sbjct: 209 TTPVKSQFGYHVILVEDKKPAGTIALKDIKGQIEQNLKLKKFQEEIKKEGEELRKKAKIE 268


>gi|319943549|ref|ZP_08017831.1| peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis ATCC
           51599]
 gi|319743364|gb|EFV95769.1| peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis ATCC
           51599]
          Length = 271

 Score = 89.3 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/277 (12%), Positives = 77/277 (27%), Gaps = 44/277 (15%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKING--ELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG+ I    + + + +L  Q      E  K+   ELI   L  QE +K G+     
Sbjct: 35  AAVVNGKAIPSSRVDEFVKILAQQGRPDTPETRKMIRDELITRELFVQEADKRGLEKTPE 94

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                              + +    +   ++ N+         
Sbjct: 95  VKQQL------------------------------EQIRQDVLIRALIANELKQSPVTDA 124

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
                 ++ +K+              + +++ + +  V++          +     +  +
Sbjct: 125 EVKAEYEKLVKDSAQSGAQEYKARHILVESEDEAKQIVER--------LKKGEGFESLAK 176

Query: 221 KFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDKRDL 278
                    + G   +        +F + + K  +   T  P  TQ G   I + D R  
Sbjct: 177 LSKDPGSGANGGDLGWNTPDTFVKEFSEAMTKLKKGEYTVIPVKTQFGYHIIQLDDVRAA 236

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                    +  Q       +      +KLR++A I 
Sbjct: 237 EP--PPFDQVKPQLKQQLERQKIQALQEKLRASAKIQ 271


>gi|170764243|ref|ZP_02639032.2| foldase protein PrsA [Clostridium perfringens CPE str. F4969]
 gi|170714999|gb|EDT27181.1| foldase protein PrsA [Clostridium perfringens CPE str. F4969]
          Length = 325

 Score = 89.3 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/314 (12%), Positives = 88/314 (28%), Gaps = 21/314 (6%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING------------ 70
                  +V     A+      T+NGE IT G++   +  +  Q  +             
Sbjct: 2   FSAVGCNMVEKTQAAIDKTTVATVNGEKITLGEVDSHLKGVFAQMKSQYGDKYMDDPQVA 61

Query: 71  ----ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
               +  +  VQ L+ + +   E +K GI      +     +   N      D      +
Sbjct: 62  QQILQQRQSVVQGLVTDKVLGIEADKLGIKPSEEEIKKKVDEQFENIKKGMGDNFDKALE 121

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
                    +      +  +             + +I     + K   V +         
Sbjct: 122 AEGYTEDTFKEFLKNQVIAEATVEYATKDVKVSDEDIKKYYDENKQQFVVKAGADVKHLL 181

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
            P  +   + + + +      +   L     K +    +    ++G+  Y   +      
Sbjct: 182 FPTEEEAQKAYDEIQSGKT--TFDDLFNKYEKNKDPKKEPIAENLGRVDYNNSNFDKDFM 239

Query: 247 QNLLKKSQNNTTNPYVTQKGVEYIA---ICDKRDLGGEIALKAYLSAQNTPTKIEKHEAE 303
           + L        + P  +  G   I    I DK     E   K  + +     K ++   +
Sbjct: 240 EGLKGLKDGEISKPVKSSFGYHIIKATNITDKETQLTEEQAKEQIISILENQKKKEAYQK 299

Query: 304 YVKKLRSNAIIHYY 317
            +++ + +  +  Y
Sbjct: 300 DLEQWKKDLNVKVY 313


>gi|198282817|ref|YP_002219138.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218665858|ref|YP_002425014.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247338|gb|ACH82931.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518071|gb|ACK78657.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 258

 Score = 89.3 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/295 (13%), Positives = 86/295 (29%), Gaps = 45/295 (15%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVE 83
              +   VS  +    +    T+NG  I + ++   +++           +  VQ L+  
Sbjct: 5   AVILAATVSAFAIPAFAAPVATVNGAAIDNSEVQAIMSMSPALAKEPNAREQVVQNLVNM 64

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            +  Q      +                               Q             Q +
Sbjct: 65  EVLSQYAVNHKL------------------------------GQTADVKERLAMAKRQIL 94

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
               V+               A  + ++ +  +E+ +R +L        +  G ++    
Sbjct: 95  ADAAVEQYVKEHPIPETDIQNAYNKFVQAMGKKEFEVRHILVKTKTEADKIMGDLKA--- 151

Query: 204 DAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPY 261
                     K     EK++  K      G+  +++   + P F   ++ +  +    P 
Sbjct: 152 --------GQKFSALAEKYSIDKASAAHGGELGWIVPGMVVPPFAQAIETAPIDKPVGPV 203

Query: 262 VTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            TQ G   I +   R L       + +  +      ++  A++V  LRS A I+ 
Sbjct: 204 QTQFGYHVIEVQATRALTP--PPLSAMKDRIKTQLQQQEAAKFVSNLRSQAKINI 256


>gi|226324373|ref|ZP_03799891.1| hypothetical protein COPCOM_02154 [Coprococcus comes ATCC 27758]
 gi|225206821|gb|EEG89175.1| hypothetical protein COPCOM_02154 [Coprococcus comes ATCC 27758]
          Length = 245

 Score = 89.3 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/281 (11%), Positives = 73/281 (25%), Gaps = 46/281 (16%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKIN----GELEKIAVQELIVETLKKQEIEKS 93
           M   +   I G  IT  ++   IA L  ++       +  K  V +LI      +  E+ 
Sbjct: 1   MEKTVEAVICGHEITSAEVDAFIASLPREQQVYASHPDFRKQCVDQLIAVYALAKYGEEE 60

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
            +                                        +      +    +     
Sbjct: 61  KLDETEKFK------------------------------AILENARKDILAQMAI-GKIF 89

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                 + EI    +  K    +   +      +      N+          E       
Sbjct: 90  EGIIISDEEIREYFEANKARFAKGASVHAKHILVDSEDKCNK--------LLESIVSGGK 141

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAI 272
              +  ++ ++     + G      +  +  +F++        +   P  TQ G   I +
Sbjct: 142 AFEDVAKESSTCPSGANGGDLGEFGKGQMVKEFEDAAFAAEIGHVVGPVKTQFGYHLIKV 201

Query: 273 CDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            DK++        +K  + ++    K ++     V+ L+  
Sbjct: 202 EDKKEAEDAKLDDVKEQIKSEIMQKKQQEAYTAKVEALKKK 242


>gi|238791435|ref|ZP_04635073.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia intermedia ATCC
           29909]
 gi|238729051|gb|EEQ20567.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia intermedia ATCC
           29909]
          Length = 628

 Score = 89.3 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/399 (9%), Positives = 107/399 (26%), Gaps = 87/399 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + ++ +  +    +++ F +  + SY     +      +NG+ I+   + + +
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSNDF-AAKVNGQEISRAQLEQAV 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                    +L +  + +L+   L  Q  +K G+T     V  
Sbjct: 60  QSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKD 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY--------------------------L 138
              Q       +  D + +L+          Q+                           
Sbjct: 120 AIRQAPYFQTDNKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPVE 179

Query: 139 AIQSIWPDVVKNDF----------MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
           A       + + +             +    + E+ A   + KN  +    ++     + 
Sbjct: 180 AQAMSELILQQREVRLATIDLKALQAQQKVTDEELKAYYDQNKNSFIAPEQMKVSFIVMD 239

Query: 189 DNKLQNQG-------------------------------FVQKRIKDAEESRLRLPKDCN 217
              +Q++                                  +   K A +   +      
Sbjct: 240 AAAMQDKITLTEEDIAAYYELHKSSYTQPEQRNYSVIQFKTEAEAKTALDELKKGADFAA 299

Query: 218 KLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
             ++ ++  I   + G+  +L       + +      +   ++   +  G   + + D +
Sbjct: 300 MAKEKSTDIISRKNGGELGWLEPDTTADELKQANLNEKGQLSDVVKSSVGYLIVRLNDIK 359

Query: 277 DLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
               +    +   L+ Q    K         +K+   A 
Sbjct: 360 PAQVKPLSEVHDALAKQVKQGKAVDAYYALQQKVSEAAT 398


>gi|327438758|dbj|BAK15123.1| parvulin-like peptidyl-prolyl isomerase [Solibacillus silvestris
           StLB046]
          Length = 282

 Score = 89.3 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/306 (9%), Positives = 89/306 (29%), Gaps = 45/306 (14%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +  T F L +   + + +  +      + T++    IT  +    +  +     +  L++
Sbjct: 1   MKKTIFALTVAASIGLAACSNPGDEVVVSTSVGD--ITQEEFYNSMKDI---AGDQLLQQ 55

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
           + V++++ +  K               +           G S E   +  +         
Sbjct: 56  VVVEQILNDKYK----------VTDEEIEEELKGVKEQYGESYEAVLAQSNLTEETLKTN 105

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
            ++         +++   +      + EI     +        +++              
Sbjct: 106 IRFT--------LLQEKALKDVEVTDEEIEKYYNQASQELNARHIL-------------- 143

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK- 252
               ++  K+ +             ++F++        G   +     + P+F +     
Sbjct: 144 -VEDEETAKEIKAKLDAGEDFAKLAKEFSTDPGSGAQGGDLGWFTVGTMVPEFNDAAYAL 202

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGE---IALKAYLSAQNTPTKIEKHEAEYVKKLR 309
             +  + P  ++ G   I + +KRD+         K  +      TK +      + +L 
Sbjct: 203 EIDEISEPVQSEHGFHIIQVTEKRDVKDYGKLEDKKEEIRESIAATKAD--WNTKMAELI 260

Query: 310 SNAIIH 315
             A + 
Sbjct: 261 KEADVK 266


>gi|34581487|ref|ZP_00142967.1| protein export protein prsA precursor [Rickettsia sibirica 246]
 gi|28262872|gb|EAA26376.1| protein export protein prsA precursor [Rickettsia sibirica 246]
          Length = 282

 Score = 89.0 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 82/301 (27%), Gaps = 38/301 (12%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           + +IF  V ++S  ++A   ++  T  G  + +  I K        +    ++       
Sbjct: 4   LSVIFLSVSMLSGIAFADKDKVVATYKGGEVKESQIMKEFKPQLNLQSGETIKN------ 57

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
                                     ++   N  L  E+ +              +    
Sbjct: 58  --------------FDDFPPQDQEKLIKIYVNNLLLKEEVAKSNITSSKEFQEKLENAKN 103

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           Q    +++ N       +   +   NK         +  +  +L              QK
Sbjct: 104 QLAQQELLANYIKSNITDKMFDDEYNKYVGNLKGKEQIKVAHIL-----------VKSQK 152

Query: 201 RIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYL---LESDLHPQFQNLLKK-SQN 255
              D +    +        E+ +  K    + G   Y+       L P+F+        N
Sbjct: 153 EANDIKTKLSKGGNFTKLAEELSLDKASASNGGVIGYILLNQPGQLVPEFEKKAFALKVN 212

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             + P  T  G   I + +K+ +   I  K             +   +Y+  L + A + 
Sbjct: 213 EVSTPVKTDFGWHVIKVLEKKPVP--IPTKEEAKVTIDNILAAELLKKYIADLEAKANLK 270

Query: 316 Y 316
            
Sbjct: 271 I 271


>gi|148269160|ref|YP_001243620.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga
           petrophila RKU-1]
 gi|170287822|ref|YP_001738060.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga sp. RQ2]
 gi|281411458|ref|YP_003345537.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga
           naphthophila RKU-10]
 gi|147734704|gb|ABQ46044.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga
           petrophila RKU-1]
 gi|170175325|gb|ACB08377.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga sp. RQ2]
 gi|281372561|gb|ADA66123.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga
           naphthophila RKU-10]
          Length = 329

 Score = 89.0 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 31/338 (9%), Positives = 90/338 (26%), Gaps = 52/338 (15%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL-- 72
           +    FV+++   + +   ++   SS +   +NG  IT   +     +  + +   ++  
Sbjct: 1   MRKLIFVILVVLGISLFG-QATTTSSTVVAIVNGNPITSDLLELEADIDGILRSIAQIDL 59

Query: 73  -------------------EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN- 112
                              ++  +  LI + L +Q  EK G+      V        +  
Sbjct: 60  RFFNVLTGTEEGLKLLLKYKQEVLNSLIDDLLVQQLAEKEGVGVSDEEVKKEVEARLKET 119

Query: 113 -------TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
                       +                  +     +    ++            E   
Sbjct: 120 VETMGITLEDLDKFLQRAGYGDLESFKKRLHWHMKTQLSLQRLQEKITQNATVTLEEAQN 179

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
              + K        +     +            + ++ +A     +         + A  
Sbjct: 180 YYNQNKETYRIPAAVHLYRITT---------EDKSKMDEALSKIRKGEDFLEVATQVA-- 228

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL--GGEI 282
               + G   ++ E  L    ++++    +     P+ ++       + +KR        
Sbjct: 229 ----TGGDLGWIEEGKLEKDIESVIFDAPEGAILGPFESEGKFVLYKVVEKRSSSYKKFE 284

Query: 283 ALKAYLSAQNTPTKIEKHEAEYVKKL----RSNAIIHY 316
            +K  +  +    K  +   ++  K+    + N+ I  
Sbjct: 285 EVKQEIMDKLLADKKNQLWNDWFNKVFEEFKKNSQIEI 322


>gi|255020025|ref|ZP_05292098.1| Peptidyl-prolyl cis-trans isomerase ppiD [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970554|gb|EET28043.1| Peptidyl-prolyl cis-trans isomerase ppiD [Acidithiobacillus caldus
           ATCC 51756]
          Length = 258

 Score = 89.0 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 85/295 (28%), Gaps = 45/295 (15%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVE 83
              +  +V   +  + +    T+NG+ I +  +   +++           +  VQ L+  
Sbjct: 5   SIVLAALVGTFAAPVFAAPVATVNGQAIDNSQVQAILSMSPELAKEPNAREQVVQNLVNM 64

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            +  Q   K  +   ++                                        Q +
Sbjct: 65  EVLSQYAMKHNLDQSADVK------------------------------ERLALAKRQIL 94

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
               V                A  + +  +  +EY +R +L        +    ++    
Sbjct: 95  ADAAVDQYIKEHPVPESEIQAAYNKFVAAMGKKEYEVRHILVKTKAEADKILAELKA--- 151

Query: 204 DAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPY 261
                     K     EK++  K      G+  +++   + P F + + K   +    P 
Sbjct: 152 --------GKKFSTLAEKYSIDKASAAHGGELGWIVPGMVVPPFAEAIEKAPIDKPVGPV 203

Query: 262 VTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            TQ G   I +   + L       + +  +      ++  A++V  LRS A I  
Sbjct: 204 QTQFGYHIIEVQATKPLTP--PPLSAMKDRIKAQLQQEEAAKFVSDLRSQAKIDI 256


>gi|170767918|ref|ZP_02902371.1| peptidylprolyl isomerase [Escherichia albertii TW07627]
 gi|170123406|gb|EDS92337.1| peptidylprolyl isomerase [Escherichia albertii TW07627]
          Length = 623

 Score = 89.0 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/396 (10%), Positives = 103/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEK------------ 92
              + +                     L +  +  LI E L  Q   +            
Sbjct: 60  NSERNRMQQQLGDRYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 93  -----SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN--------HFKQYLA 139
                     D    N  +       G+SA+ ++  L  Q              F     
Sbjct: 120 AIFATPAFQVDGKFDNSRYNSILNQMGMSADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 140 IQSIWPDVVKNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
              +   V +   + +               E EI +  ++ KN  +     R     + 
Sbjct: 180 TDELAALVAQQRVVREATIDVNALAAKQAVTEQEIASYYEQNKNNFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                +        
Sbjct: 240 AATMQQPVSDADIQSYYDQHQEQFTQPQRMRYSIIQTKTEDEAKAVLAELNKGGDFAALA 299

Query: 220 EKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++ I    + G   +L ++ +  + +N   K +   +    +  G   + + D +  
Sbjct: 300 KEKSADIISARNGGDMGWLEDATVPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDVQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 395


>gi|163939063|ref|YP_001643947.1| peptidylprolyl isomerase [Bacillus weihenstephanensis KBAB4]
 gi|229166104|ref|ZP_04293865.1| Foldase protein prsA 2 [Bacillus cereus AH621]
 gi|163861260|gb|ABY42319.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus
           weihenstephanensis KBAB4]
 gi|228617326|gb|EEK74390.1| Foldase protein prsA 2 [Bacillus cereus AH621]
          Length = 285

 Score = 89.0 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/304 (11%), Positives = 81/304 (26%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
            + F++     + ++S       S    T     IT  D  K+   LK +     L ++ 
Sbjct: 4   KSTFIITALISILMLSACGQKNDSATIATTTNSTITKSDFEKQ---LKDRYGKDTLYEMV 60

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
            Q++I +  K             + V+    +     G        F           ++
Sbjct: 61  AQDVITKKYK----------VSDDAVDKEVEKAKDQYG------EQFKATLENNRLKDEE 104

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 105 DFKNQIKFKLALNEAIKQSVTEKDVKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ ++            ++ +       + G   Y     + P+F+    K   
Sbjct: 145 SNENEAKEIKKKLDTGTSFEELAKQESQDLASKDNGGDLGYFGAGKMTPEFEKAAYKLKP 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE--AEYVKKLRSNA 312
              +NP  +  G   I + DK+DL     +K  +       ++       + ++     A
Sbjct: 205 GQISNPVKSPNGYHIIKLTDKKDLQPYDKVKDSIRKDLEEERLADPSFGQKLLQDELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 DIKI 268


>gi|322381169|ref|ZP_08055172.1| PrsA-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321154745|gb|EFX47016.1| PrsA-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 303

 Score = 89.0 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/305 (11%), Positives = 85/305 (27%), Gaps = 27/305 (8%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
            +  V+++ C V      + + +  +   I    I  GD+         Q +        
Sbjct: 14  LSLAVVVLVCFVIFGFTGAASGNGTVVAEIGKTKIRKGDLE--------QNLITHYGSSV 65

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           + +++     K E + +G+      ++       +    + E    F           +Q
Sbjct: 66  LNQMLDREAIKMEAQSAGLQISDADIDKELKVMMQ----AYESEEVFYQSMKEQLGMSRQ 121

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
            +     +  +++          + EI    Q       ++  +     +    +  N+ 
Sbjct: 122 EVKDDVYYKLLLEKVATKDIQVSDSEIQDYIQAHPEEYAKKREMHLRRVTTKTREQANKV 181

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD---LHPQFQNLLKKS 253
                         +           +   +  + G   ++ E D        +      
Sbjct: 182 VAA---------FSKGDDFAKLARDRSIDDYANNGGDLGWVKEDDPLTDKQVMKQAKDLK 232

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
               + P  T +G   + + + +D G   E  +K  +  Q    K      +  KKLR  
Sbjct: 233 VGQISKPVQTNEGYLIVFLQESKDKGGLDEQTIKETVRKQLALQKAPS-IKDLSKKLREK 291

Query: 312 AIIHY 316
             +  
Sbjct: 292 WNVKI 296


>gi|238788012|ref|ZP_04631808.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia frederiksenii ATCC
           33641]
 gi|238723960|gb|EEQ15604.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia frederiksenii ATCC
           33641]
          Length = 628

 Score = 89.0 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 38/399 (9%), Positives = 109/399 (27%), Gaps = 87/399 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + ++ +  +    +++ F +  + SY     +      +NG+ I+   + + +
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSNDF-AAKVNGQEISRAQLEQAV 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                    +L +  + +L+   L  Q  +K G+T   + V  
Sbjct: 60  QSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDDQVKD 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ----------------------- 141
              Q          D + +L+          Q+  +Q                       
Sbjct: 120 AIRQAPYFQTDGKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPVE 179

Query: 142 -------SIWPDVVK------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                   +    V+           +    + E+ A   + KN  +    ++    ++ 
Sbjct: 180 AQAMSALILQQRDVRLATIDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISFIAMD 239

Query: 189 DNKLQNQG-------------------------------FVQKRIKDAEESRLRLPKDCN 217
              +Q++                                  +   K A +   +      
Sbjct: 240 AAAMQDKITVTEDDIAAYYDQHKSSYGQPEQRNYSVIQFKTEAEAKTALDELKKGADFAA 299

Query: 218 KLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
             ++ ++  I   + G+  +L       + +      +   ++   +  G   + + D +
Sbjct: 300 MAKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNDIK 359

Query: 277 DLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
               +    +   L+ Q    K         +K+   A 
Sbjct: 360 PEQVKPLSEVHDALAKQVKQEKAVDAYYSLQQKVSEAAT 398


>gi|302338942|ref|YP_003804148.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301636127|gb|ADK81554.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 358

 Score = 89.0 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 48/347 (13%), Positives = 109/347 (31%), Gaps = 46/347 (13%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTI---NGEVITDGDISKRIALLKLQKINGEL- 72
               VL++F +  +V   S  +  +   T+     E I+   + +RIA +   +    L 
Sbjct: 12  LLGVVLVLFFLCGVVFPVSADLVGQTVATVTLTKTEGISSVQLDQRIAQVAAARKKAGLS 71

Query: 73  -----EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
                    +  +I E L KQ  E+SGI+     +     +   +         +    Q
Sbjct: 72  ADGVDRTEVLDAMIAEVLIKQAAERSGISIPQEQIQQVVAKQKASIEQQVGRPLTDRQYQ 131

Query: 128 G-------IGDNHFKQYLAIQSIWPDVV----KNDFMLKYGNLEMEIPANKQKMKNITVR 176
                        +K  +  Q +    +    ++ F       E EI  +          
Sbjct: 132 EVVRSQTGFSWEQYKGSIREQIMQQRYIATEKRDMFEAIQPPTEKEIQDHYDAHATSITN 191

Query: 177 EYLIR---TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIG 232
              +R     + +I  N  + Q   ++      + R    K  + + +++         G
Sbjct: 192 PEYVRLKQIFIPTISMNDQEKQAARERLESAWTKLRNGSAKFDDLVLQYSEDESSKYRGG 251

Query: 233 KAQYLLESDL-------HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL------- 278
              Y+  +D           F+ L      + +    +  G+  + + + R+        
Sbjct: 252 DVGYIARADQRVEKTYGADFFRKLFSLQTGDYSGVIESNVGLHILKVTEHREARILSLDD 311

Query: 279 ----GGEIALKAYLSAQNTPTKIEKHEAEYV----KKLRSNAIIHYY 317
                 ++ ++ Y+ A     K +    + +    + L++ A I  Y
Sbjct: 312 QIAPDNKMTVREYIRAGLFQEKQQAVLKKALDAVVEDLKAEAEIVVY 358


>gi|291278662|ref|YP_003495497.1| hypothetical protein DEFDS_0230 [Deferribacter desulfuricans SSM1]
 gi|290753364|dbj|BAI79741.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 329

 Score = 89.0 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 77/280 (27%), Gaps = 14/280 (5%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL-IVETLKKQEIEKSGIT 96
                   IN       D+   I          +  K  + +L I E +K Q +      
Sbjct: 42  NLDEAVVVINNNAYYRNDVMNFIYFNFPGVTEDDFNKDNLTQLFINEFIKFQLLLSDVKK 101

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
            +    +              ED         I    +K+ L    I  + +        
Sbjct: 102 NNVKVSSEKLNSIMNKIEKIGEDSFVI--DFPISLEEYKKLLKESLIVKEWLNRLIEKNI 159

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
              E E+     K+            +     + K                  LR     
Sbjct: 160 TVSEDEVKNKYNKIDKTKKSIVKYHVLHIVTANYKDALNARRA---------LLRGKSFK 210

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
               K++        G   Y++  D+   FQ + +      +  Y +  G     + DK+
Sbjct: 211 EVALKYSVGPEKDQGGDLGYIVLDDMPVIFQKIKRLRIKRISPVYKSDYGYHIFQVLDKK 270

Query: 277 D--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                G   LK  L  +    K+EK   +YV+ L+ NA I
Sbjct: 271 KEVEVGYEVLKPRLYQEIFAEKVEKFINDYVEVLKKNAKI 310


>gi|123443338|ref|YP_001007312.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122090299|emb|CAL13165.1| peptidyl-prolyl cis-trans isomerase D [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 628

 Score = 89.0 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/399 (9%), Positives = 107/399 (26%), Gaps = 87/399 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + ++ +  +    +++ F +  + SY     +      +NG+ I+   + + +
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSNDF-AAKVNGQEISRAQLEQAV 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                    +L +  + +L+   L  Q  +K G+T     V  
Sbjct: 60  QSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKD 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY--------------------------L 138
              Q          D + +L+          Q+                           
Sbjct: 120 AIRQAPYFQTDGKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPVE 179

Query: 139 AIQSIWPDVVKNDF----------MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
           A       + + +             +    + E+ A   + KN  +    ++    ++ 
Sbjct: 180 AQAMSELILQQREVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISFIAMD 239

Query: 189 DNKLQNQG-------------------------------FVQKRIKDAEESRLRLPKDCN 217
              +Q++                                  +   K A +   +      
Sbjct: 240 AAAMQDKITVTEEDIAAYYDQHKSTYTKPEQRNYSVIQFKTEAEAKTALDELKKGADFAA 299

Query: 218 KLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
             ++ ++  I   + G+  +L       + +      +   ++   +  G   + + D +
Sbjct: 300 IAKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNDIK 359

Query: 277 DLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
               +    +   L+ Q    K         +K+   A 
Sbjct: 360 PAQVKPLSEVHDALAKQVKQEKAVDAYYALQQKVSEAAT 398


>gi|171321062|ref|ZP_02910045.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MEX-5]
 gi|171093676|gb|EDT38826.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MEX-5]
          Length = 260

 Score = 89.0 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 82/278 (29%), Gaps = 47/278 (16%)

Query: 43  RTTINGEVITDGDISKRIALL--KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I        +A L  + Q  + +L++   QEL+   +  QE  + GI    +
Sbjct: 25  IAVVNGTPIPKSRADAMVAQLVQQGQTDSPQLQQAVRQELVNREILMQEAIREGIPNRPD 84

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q++    +   F+ K    +
Sbjct: 85  VKAQV-------------------------------AVAQQTVVLRSMIESFLKKNQPTD 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+ A   ++                +   +       + +            K  +  +
Sbjct: 114 AEVKARYDELVKGAGGNREYHLHHILVDSEQQAKDLIAKIK---------GGAKFEDLAK 164

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAICDKRD 277
           +++       + G   +       P+F    +K  +   T+ P  TQ G   I   D RD
Sbjct: 165 QYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDTPVKTQFGWHIIRADDIRD 224

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +         + AQ     +++    + + LR  A I 
Sbjct: 225 VAP--PPFDQVKAQIAQQLVQQKLQAFEEGLRQQAKIQ 260


>gi|238795538|ref|ZP_04639053.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia mollaretii ATCC
           43969]
 gi|238720657|gb|EEQ12458.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia mollaretii ATCC
           43969]
          Length = 628

 Score = 89.0 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 37/399 (9%), Positives = 108/399 (27%), Gaps = 87/399 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + ++ +  +    +++ F +  + SY     +      +NG+ I+   + + +
Sbjct: 1   MMDNLRAAANNVVLKILLALIMLSFILTGVGSYLIGGSNDY-AAKVNGQEISRAQLEQAV 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                    +L +  + +L+   L  Q  +K G+T     V  
Sbjct: 60  QSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKD 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY--------------------------L 138
              Q       +  D + +L+          Q+                           
Sbjct: 120 AIRQAPYFQTDNKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPIE 179

Query: 139 AIQSIWPDVVKNDF----------MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
           A       + + +             +    + E+ A   + KN  +    ++    ++ 
Sbjct: 180 AQAMSELILQQREVRLATVDLKALQAQQKVTDEELKAYYDQNKNSFIAPEQMKVSFIAMD 239

Query: 189 DNKLQNQG-------------------------------FVQKRIKDAEESRLRLPKDCN 217
              +Q++                                  +   K A +   +      
Sbjct: 240 AAAMQDKITVTEEDIAAYYDQHRSSYTQPERRNYSVIQFKTEAEAKVALDELKKGADFAA 299

Query: 218 KLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
             ++ ++  I   + G+  +L       + +      +   ++   +  G   + + D +
Sbjct: 300 MAKEKSTDIISRKNGGELGWLEPETTADELKQANLSEKGQLSDVVKSSVGYLIVRLNDIK 359

Query: 277 DLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
               +    +   L+ Q    K         +K+   A 
Sbjct: 360 PEQVKPLSEVHDALAKQVKQEKAVDAYYALQQKVSEAAT 398


>gi|329113840|ref|ZP_08242611.1| Cell-binding factor 2 [Acetobacter pomorum DM001]
 gi|326696850|gb|EGE48520.1| Cell-binding factor 2 [Acetobacter pomorum DM001]
          Length = 260

 Score = 89.0 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 74/282 (26%), Gaps = 50/282 (17%)

Query: 43  RTTINGEVITDGDISKRIALLKLQK---INGELEKIAVQELIVETLKKQEIEKSGITFDS 99
             T+NGE IT  D+   +  L  Q        +  + V +L  +       +K G+    
Sbjct: 2   VATVNGEKITLSDVQTAMISLPPQMRQLPPNLIFPMLVNQLADQKAILITAQKEGLDKKP 61

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
            T                                        ++    +    M    + 
Sbjct: 62  ETQQMMVNAS------------------------------NTALQNAWLSEQVMPHLNDD 91

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
            ++   ++        +E   R +L              +    D  +            
Sbjct: 92  AIKQYYDQNYAGKPAEKEVHARHIL-----------VKTEAEANDVIKKLKAGADFGKLA 140

Query: 220 EKFA--SKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNT-TNPYVTQKGVEYIAICDK 275
            + +        + G   +  ++D+ P F +      +    + P  +Q G   I + D 
Sbjct: 141 AEVSTDKGSAQQNGGDLGWFKKTDMIPAFSDAAFAMKKGEISSTPVKSQYGYHVIQVLDT 200

Query: 276 RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           R           +  +     I+K+  E V K  +   I  +
Sbjct: 201 RTDPV--PTLDSVRDKIRQALIQKYVREAVDKATNQVKIVRF 240


>gi|157964715|ref|YP_001499539.1| protein export protein prsA precursor [Rickettsia massiliae MTU5]
 gi|157844491|gb|ABV84992.1| Protein export protein prsA precursor [Rickettsia massiliae MTU5]
          Length = 282

 Score = 89.0 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 82/301 (27%), Gaps = 38/301 (12%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           + +IF  V ++S  ++A   ++  T  G  + +  I K        +    ++       
Sbjct: 4   LSVIFLSVSMLSGIAFADKDKVVATYKGGEVKESQIMKEFKPQLNLQSGETIKN------ 57

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
                                     ++   N  L  E+ +              +    
Sbjct: 58  --------------FDDFPPQDQEKLIKIYVNNLLLKEEVAKSNITSSKEFQEKLENAKN 103

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           Q    +++ N       +   +   +K         +  +  +L              QK
Sbjct: 104 QLAQQELLANYIKSNITDKMFDDEYSKYVGNLKGKEQIKVAHIL-----------VKSQK 152

Query: 201 RIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYL---LESDLHPQFQNLLKK-SQN 255
              D +    +        E+ +  K    + G   Y+       L P+F+        N
Sbjct: 153 EANDIKTKLSKGGNFTKLAEELSLDKASASNGGVVGYILLNQPGQLVPEFEKKAFALKVN 212

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             + P  T  G   I + +K+ +   I  K             +   +Y+  L + A + 
Sbjct: 213 EVSTPVKTDFGWHIIKVLEKKPVP--IPTKEEAKVTIDNILAAEVLKKYISDLEAKADLK 270

Query: 316 Y 316
            
Sbjct: 271 I 271


>gi|91202462|emb|CAJ72101.1| similar to peptidyl-prolyl cis-trans isomerase (survival protein
           surA precursor) [Candidatus Kuenenia stuttgartiensis]
          Length = 328

 Score = 89.0 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/294 (11%), Positives = 94/294 (31%), Gaps = 20/294 (6%)

Query: 42  IRTTINGEVITDGDISKRIALLKLQKIN-----------GELEKIAVQELIVETLKKQEI 90
           IR  ++  +IT  ++ KR A    +  +            ++ +  ++ELI   L  +E 
Sbjct: 31  IRAVVDEAIITQDEVIKRSAAAIREARSKYSEEEFAKNIEKILEYTLEELIDRKLLVKEA 90

Query: 91  EKSG-----ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
           +K       +  +      +F++ A     S   F    + QGI     K  L    +  
Sbjct: 91  QKVFGTDISMMDEVQKELDYFLKGAVENVGSLSKFYEIAESQGINPIERKTELKEDIMID 150

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNIT-VREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
            ++K +   K       +     +  +    ++ +    +         ++       + 
Sbjct: 151 KIIKENVNNKVKVPPKLLRRYYMENMDEFCQKKEIKLRHIMIKFSTHDNDKAKTYAFAEK 210

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVT 263
                       +    ++   +    G+  +     L  + ++++     N  +    +
Sbjct: 211 IMTLLSTGEDFSSVARSYSEGPNAEKGGEWSFDEIQGLRKELRDVVNSLKDNEYSKITES 270

Query: 264 QKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             G     +   R   +     ++  +  +    +I + + +Y+  LR +A I 
Sbjct: 271 PVGYHIFKVELIRPEVVKKFEDVQDEIYKKLYREEIGRLKKKYILDLREDAFIK 324


>gi|46397002|sp|Q97E99|PRSA_CLOAB RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|325510620|gb|ADZ22256.1| peptidylprolyl isomerase [Clostridium acetobutylicum EA 2018]
          Length = 333

 Score = 89.0 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 47/330 (14%), Positives = 104/330 (31%), Gaps = 38/330 (11%)

Query: 14  KLLTTYFVLIIFCIVPIVSYK----SWAMSSRIRTTI-NGEVITDGDISKRIALLKLQKI 68
           K + T  ++ +F    +          A++S++  TI   + IT G+I K       Q  
Sbjct: 5   KQIATALLVGMFTFSAVGCSMVEKRPEAINSKVVATIYGNQTITRGEIDKLAKGTVEQLK 64

Query: 69  NG----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
           +                 + ++  +  LI + +  ++ +   IT   + +          
Sbjct: 65  SQYGDSYEKNEEAVAALKKQKEQILTSLIDQKIFLKKAKDQKITLTKDEIKTNVDDVYAQ 124

Query: 113 TGLSAEDFSSFLDK---QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
                +  S F  +    G     FK  L  ++I   +++   +      + E       
Sbjct: 125 YQQEFKTESEFKSQLSQYGYTVAEFKDQLKNRAISNKLIQQ-VVKDVKVSDDEAKKYYDS 183

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
            KN   +      +   +   + + +    +          +        ++ ++     
Sbjct: 184 HKNSYTQSPNTVHLAHILVKTEKEAKAVKARI--------DKGEDFATVAKQVSTDGSKE 235

Query: 230 SIGKAQYLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIAL 284
             G    + E+D +         LK + N  + P  TQ G   I    K +  +    ++
Sbjct: 236 KGGDLGDIQENDSNYDKTFMAAALKLNDNQVSAPVHTQFGWHVIKCIKKTEYPVKDFNSV 295

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           K  +      TK +    + +KK  S A I
Sbjct: 296 KDDIKQTVLSTKQKSVYQKTLKKWESQANI 325


>gi|40063240|gb|AAR38067.1| PPIC-type PPIASE domain protein [uncultured marine bacterium 577]
          Length = 263

 Score = 88.6 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 87/309 (28%), Gaps = 53/309 (17%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING- 70
            IK L    + +    V   ++ +          +NG+ I +  +   +  L  Q     
Sbjct: 3   LIKFLKLTAIFLPALAVVTTTHAAP------LAKVNGKTIPNSRLELVMKNLISQGQKDT 56

Query: 71  -ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
            E  K    +LI + +  QE  +  +  D +                             
Sbjct: 57  PETRKAIRDDLIKQEVLSQEALRKKLDKDPDISTQIM----------------------- 93

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                   +  QS+    ++ DF+ K    E E+    Q +   ++ +         I  
Sbjct: 94  --------ITRQSVLIRALQADFIKKNDPSEKELRDEYQAVSAASMGDQEYNPSHILIST 145

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQF-Q 247
                    + +         +  K     +  +         G+  +         F +
Sbjct: 146 EAEAKDIIAKIK---------KGGKFEEIAKDRSIDDGSKNKGGELGWSSARSYAQPFAE 196

Query: 248 NLLKKSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
            L+K  +   T  P  +  G   I     R L   I     +  +     +++    Y++
Sbjct: 197 ALVKLKKGEITQAPVKSSFGWHVIRSNGMRPLK--IPPFKEVKQKVQQRILQQKFQAYLE 254

Query: 307 KLRSNAIIH 315
           +L+  A I 
Sbjct: 255 ELKDKAKIE 263


>gi|145218834|ref|YP_001129543.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Prosthecochloris
           vibrioformis DSM 265]
 gi|145204998|gb|ABP36041.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
           phaeovibrioides DSM 265]
          Length = 439

 Score = 88.6 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/276 (10%), Positives = 77/276 (27%), Gaps = 14/276 (5%)

Query: 47  NGEVITDGDISKRIALLKLQKI----NGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
            G+VI   ++  R  + +LQ      +  L    +  LI + +   +     ++   N +
Sbjct: 36  GGDVIFRSELDSRETMTRLQYPDLKDDRSLRSSILDGLINQKIILAKARIDSVSISENDI 95

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV---KNDFMLKYGNL 159
                   R              + G      ++ LA +     ++   +          
Sbjct: 96  ASSADARLRQLSRRFSSKEDMERQFGKSIEGIRRDLAGEIRSQQMIETLRRQKFSGVTIG 155

Query: 160 EMEIPANKQKM---KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
             E+ +  +           E     +L      +       +K     ++         
Sbjct: 156 YGEVMSFYRDNRDAMPTLPEEVSFSQILKFPGVTRAAKASARKKIEDIEKKFTTGFLSFD 215

Query: 217 NKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICD 274
               +++         G   ++   +L   F++        + +    T+ G   I    
Sbjct: 216 ELARRYSDDPGSAQLGGDLGFVQRGELVKPFEDAAYGLKDGHVSGIVETRYGFHIIQRLG 275

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
           +      I ++  L A +   + E      ++ +RS
Sbjct: 276 REGRS--IHVRHILVAFDRSDRDEAETVALLEAIRS 309



 Score = 42.4 bits (97), Expect = 0.099,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 48/159 (30%), Gaps = 17/159 (10%)

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
              R   +R +L +   +       V                      K++      S+G
Sbjct: 276 REGRSIHVRHILVAFDRSDRDEAETVALLEAIRSGLLEGKGSFAEMARKYSDDPVSASLG 335

Query: 233 --------KAQYLLESDLHPQFQNLLK--KSQNNTTNPYVT--QKG---VEYIAICDKRD 277
                      YL    L P+ Q ++   ++Q   ++P      +G        + ++R 
Sbjct: 336 GAVLASGSSRPYLDPRSLRPELQAIIGGLRTQGEISHPRKITPPRGEPFYGMFRLNERRL 395

Query: 278 LGGEIALKAY--LSAQNTPTKIEKHEAEYVKKLRSNAII 314
                  K Y  L       K ++   E+V +LRS   +
Sbjct: 396 PHTLDPEKDYAMLEQLALDDKKQRLFNEWVSELRSEVFV 434


>gi|302380403|ref|ZP_07268872.1| PPIC-type PPIASE domain protein [Finegoldia magna ACS-171-V-Col3]
 gi|303235180|ref|ZP_07321799.1| PPIC-type PPIASE domain protein [Finegoldia magna BVS033A4]
 gi|302311807|gb|EFK93819.1| PPIC-type PPIASE domain protein [Finegoldia magna ACS-171-V-Col3]
 gi|302493667|gb|EFL53454.1| PPIC-type PPIASE domain protein [Finegoldia magna BVS033A4]
          Length = 250

 Score = 88.6 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 82/286 (28%), Gaps = 46/286 (16%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLK---LQKINGELEKIAVQELIVETLKKQEIEKSG 94
              +I   +NGE I   ++   I  L     Q  N E  K    ELI   L   + +K+G
Sbjct: 4   NKDKILAVVNGEEIKQSEVDNFIQALGYRGAQFNNEEGRKRLTDELINRKLLFFDAKKTG 63

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
           +  D   V                                      + +  D    + + 
Sbjct: 64  LDKDEIYVKEV-------------------------------KKQSEELLKDFAMANIIN 92

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
                + E+    +  K+    +                     +   K+ +E       
Sbjct: 93  SVRVSDDELKEYYESHKDNFKVQPTFTASHIL---------VESEDLAKEIKEKIDNDGD 143

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAIC 273
                +++++       G      +  +  +F+N L +++  +   P  TQ G   I I 
Sbjct: 144 FAQLAKEYSTCPSKEQGGDLGTFQQGQMVKEFENALIENEIGDIVGPVKTQFGYHIINIK 203

Query: 274 DKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           DK +  +      K  +       K ++   +   +L+    I  +
Sbjct: 204 DKTEGKVKSFEEAKNEVKQTLLQLKQQQAYIDATDRLQKEYKIEKF 249


>gi|169824601|ref|YP_001692212.1| peptidil-prolyl cis-trans isomerase [Finegoldia magna ATCC 29328]
 gi|167831406|dbj|BAG08322.1| peptidil-prolyl cis-trans isomerase [Finegoldia magna ATCC 29328]
          Length = 250

 Score = 88.6 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 82/286 (28%), Gaps = 46/286 (16%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLK---LQKINGELEKIAVQELIVETLKKQEIEKSG 94
              +I   +NGE I   ++   I  L     Q  N E  K    ELI   L   + +K+G
Sbjct: 4   NKDKILAVVNGEEIKQSEVDNFIQALGYRGAQFNNEEGRKRLTDELINRKLLFFDAKKTG 63

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
           +  D   V                                      + +  D    + + 
Sbjct: 64  LDKDEIYVKEV-------------------------------KKQSEELLKDFAMANIIN 92

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
                + E+    +  K+    +                     +   K+ +E       
Sbjct: 93  SVRVSDDELKEYYENHKDNFKVQPTFTASHIL---------VESEDLAKEIKEKIDNDGD 143

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAIC 273
                +++++       G      +  +  +F+N L +++  +   P  TQ G   I I 
Sbjct: 144 FAQLAKEYSTCPSKEQGGDLGTFQQGQMVKEFENALIENEIGDIVGPVKTQFGYHIINIK 203

Query: 274 DKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           DK +  +      K  +       K ++   +   +L+    I  +
Sbjct: 204 DKTEGKVKSFEEAKNEVKQTLLQLKQQQAYIDATDRLQKEYKIEKF 249


>gi|229056898|ref|ZP_04196294.1| Foldase protein prsA 2 [Bacillus cereus AH603]
 gi|228720426|gb|EEL71999.1| Foldase protein prsA 2 [Bacillus cereus AH603]
          Length = 285

 Score = 88.6 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/304 (11%), Positives = 81/304 (26%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
            + F++     + I+S       S    T     IT  D  K+   LK +     L ++ 
Sbjct: 4   KSTFIITALISILILSACGQKNDSATIATTTNSTITKSDFEKQ---LKDRYGKDTLYEMV 60

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
            Q++I +  K             + V+    +     G        F           ++
Sbjct: 61  AQDVITKKYK----------VSDDAVDKEVEKAKDQYG------EQFKATLENNRLKDEE 104

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 105 DFKNQIKFKLALNEAIKQSVTEKDVKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ ++            ++ +       + G   Y     + P+F+    K   
Sbjct: 145 SNENEAKEIKKKLDTGTSFEELAKQESQDLASKDNGGDLGYFGAGKMTPEFEKAAYKLKP 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE--AEYVKKLRSNA 312
              +NP  +  G   I + DK+DL     +K  +       ++       + ++     A
Sbjct: 205 GQISNPVKSPNGYHIIKLTDKKDLQPYDKVKDSIRKDLEEERLADPSFGQKLLQDELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 DIKI 268


>gi|186475780|ref|YP_001857250.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phymatum STM815]
 gi|184192239|gb|ACC70204.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phymatum STM815]
          Length = 642

 Score = 88.6 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/397 (9%), Positives = 93/397 (23%), Gaps = 103/397 (25%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKR---------- 59
              +  +    +L     V I  ++ +   S    ++NG  IT G+              
Sbjct: 9   QRLMMFMLILVILPGLGFVGIQGFRGFFDESANVASVNGHKITRGEFDNAWRQQMDRARQ 68

Query: 60  ---IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR----- 111
                         E  K  +  LI + +   E ++  +T   + +    +         
Sbjct: 69  MLGAQFDAKMFDTPERRKDMLDGLIQQRVLADETQRLHLTVSDDALRRALLADPVIGSLK 128

Query: 112 --NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV---------------------- 147
             +  +    +   L  QGI  + +++ +        +                      
Sbjct: 129 NPDGSIDVNKYKELLAMQGITPDQYQEQVRYSMSMQQLPAAITQTSFTPKTLAQHLTELA 188

Query: 148 -----------VKNDFMLKYGNLEMEIPANKQKMKNIT---------------------- 174
                         ++  K    + +I A     ++                        
Sbjct: 189 EQQREVQGLAFRAKEYESKVQPTDAQIQAYYDAHRDDFATPATATIQYLVLSPATLAAAA 248

Query: 175 -------VREYLIRTVLFSIPDNKLQNQ-----------GFVQKRIKDAEESRLRLPKDC 216
                   + Y      F  P     +               +K  + A E   ++    
Sbjct: 249 NPSDAELKKYYDDNIAHFRTPGEVRASHILIVAPKDASSADKEKAKQKAREVLAQVKAHP 308

Query: 217 NKLEKFASKI-----HDVSIGKAQYLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVE 268
           ++  + A +           G   Y     +         + K  ++  ++   +  G  
Sbjct: 309 DQFAQLAQQNSQDPGSASKGGDLGYFSPGMIAGGKAFDDAVFKMKKDEVSDLIQSDFGYH 368

Query: 269 YIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAE 303
            + + D R         +K  ++         K   +
Sbjct: 369 IVKVTDVRPSVTKPFEEVKDSIAKDLKAQLATKAFGD 405


>gi|310828352|ref|YP_003960709.1| foldase protein PrsA [Eubacterium limosum KIST612]
 gi|308740086|gb|ADO37746.1| foldase protein PrsA [Eubacterium limosum KIST612]
          Length = 253

 Score = 88.6 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 79/285 (27%), Gaps = 47/285 (16%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQK----INGELEKIAVQELIVETLKKQEIEKS 93
           M  ++   + G+ I + D+   I  L  ++       E  +  ++EL+ + L   E +K 
Sbjct: 1   MEKQVVAVVEGKEIYNTDLEALIQQLPQEQQGQFRTKEGRRKLLEELVAQELFYLEGKKD 60

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
                   +                                    A + +    +   FM
Sbjct: 61  HEDESEEYLA-------------------------------LVEDAKEKLLKSHMIAKFM 89

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                 + E+     +     +    IR     +P          Q+ I   +E +    
Sbjct: 90  KNVEVSDEEVKKFYDENPKQFIAPDSIRASHILLPSE--------QQAIDIIKEIKDGGK 141

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTT-NPYVTQKGVEYIA 271
                 + ++        G   Y  +  + PQF+N          +  P  T  G   I 
Sbjct: 142 TFEEAAKAYSVCPSREQGGDLSYFSKGKMVPQFENAAFAMKVGEMSDEPVKTDFGWHIIK 201

Query: 272 ICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           + D +  +      +K          K  +   + V +L+    +
Sbjct: 202 VTDSKTSETIPYDVVKESARQYLLEQKQNRAFLDRVDELKKEYDV 246


>gi|187917986|ref|YP_001883549.1| basic membrane protein [Borrelia hermsii DAH]
 gi|119860834|gb|AAX16629.1| basic membrane protein [Borrelia hermsii DAH]
          Length = 344

 Score = 88.6 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 104/341 (30%), Gaps = 37/341 (10%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTIN---GEVITDGDISKRIALLKL 65
           +   +  +  +   ++F IV I S+      +     IN    E+IT  +   ++  LK 
Sbjct: 2   IDIKVIFMGNFLCFLLFFIVGITSFAQ----NTPVVIINLHSNEIITKTEFDSKVNTLKK 57

Query: 66  QKI---NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
            +    +    K  +Q LI + L  QE  K GI      V            L+ E    
Sbjct: 58  TQGRDLSNAERKQVLQILIADVLFGQEALKQGIKVGDEEVMQTIRAQFGLASLTDEQIRQ 117

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVV----KNDFMLKYGNLEMEIPANKQKMKNITVREY 178
            ++ QG   N     +        ++    +  F       E E+    +  K   V   
Sbjct: 118 MIESQGTNWNELLSSMKRSLSAQKLILKMAQPKFSEIKTPSEKEVIEYYEANKTKFVNPD 177

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYL 237
           + R           +    + K    A + + +       + K+++        G   +L
Sbjct: 178 ISRISHVFFSSKDKKRSEILTKAKDIANQIKSKKITFEEAVRKYSNDEGSKAKNGDLGFL 237

Query: 238 LESDLH-------PQFQNLLKKSQNNTTNPYVTQKGVEYIAIC-----------DKRDLG 279
              D +          + +   ++ + + P  +++G   + +            DK    
Sbjct: 238 ARGDQNAQNVLGLDFIKEVFMLNKGDISQPISSKEGFHIVKVTEMYSQRFLGLQDKISPN 297

Query: 280 GEIALKAYLSAQNTPTKIEKHE----AEYVKKLRSNAIIHY 316
             + +K  +         ++       E   KL  +A I  
Sbjct: 298 VNMTVKDAIKNNMVNIHQQQIVARVQQEIYDKLNKSASIQI 338


>gi|325279465|ref|YP_004252007.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Odoribacter
           splanchnicus DSM 20712]
 gi|324311274|gb|ADY31827.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Odoribacter
           splanchnicus DSM 20712]
          Length = 445

 Score = 88.6 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/289 (10%), Positives = 85/289 (29%), Gaps = 13/289 (4%)

Query: 33  YKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ---KINGELEKIAVQELIVETLKKQE 89
           +    +  +I   +  E+I   DI       + Q     + + +   +++ +V+ L   +
Sbjct: 18  FAQKNVIDKIVAIVGDEIILQSDIENAFLQQQGQGIISSSPDYKAEILEQQLVQKLLMAQ 77

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP---D 146
            +   I      V             +           G      K  +          +
Sbjct: 78  AQIDSIIVSDEEVENAVSSQIEFFISNIGSQERLEKYFGKSIQEIKDDMRNPLKEQLITE 137

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
            ++   + K      E+ +  +K+   ++ +   R  L  I      ++   ++  +   
Sbjct: 138 QMQQKIVEKIRITPSEVRSYFKKIPKDSLPDMPDRYELQQIVLKPDVSEAEKERIREQLR 197

Query: 207 ESRLRL----PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPY 261
             R ++             ++        G+  Y  + +L P F +          +   
Sbjct: 198 SFRDQILKGEKTFNTLAVLYSEDASAPRGGELGYKSKKELDPAFAEAAFSLKPGKISKII 257

Query: 262 VTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
            ++ G   I + D+   G +I ++  +         ++     +  +R 
Sbjct: 258 ESEYGFHIIQLIDR--QGEKINVRHIILQPKVSDTEKQEALNRLDTIRQ 304



 Score = 40.8 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/288 (6%), Positives = 81/288 (28%), Gaps = 17/288 (5%)

Query: 45  TINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
            +    IT  ++      +    +    ++  +Q+++++    +  ++       +  + 
Sbjct: 143 IVEKIRITPSEVRSYFKKIPKDSLPDMPDRYELQQIVLKPDVSEAEKERIREQLRSFRDQ 202

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
                     L+          +G    +  +     +                +E E  
Sbjct: 203 ILKGEKTFNTLAVLYSEDASAPRGGELGYKSKKELDPAFAEAAFSLKPGKISKIIESEYG 262

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
            +  ++ +    +  +R ++     +  + Q  + +     +               F++
Sbjct: 263 FHIIQLIDRQGEKINVRHIILQPKVSDTEKQEALNRLDTIRQYITDGKMTFEEAAYYFST 322

Query: 225 KIHDVSIGKAQ--------YLLESDLHPQFQNL-LKKSQNNTTNPYVT----QKGVEYIA 271
                + G            +   D+         K      + P+++    Q+  + + 
Sbjct: 323 DKKTRNNGGLFADPQTSEARIARPDIPGDMAREVNKMKPGEISQPFISHTNGQEEYKIVK 382

Query: 272 ICD---KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           I +   +     +   +          K  +   +++K+ +++  IH 
Sbjct: 383 IKEFYPRHKANLDDDWQN-FELMLKREKQMEKLEKWIKEKQADTYIHI 429


>gi|126699880|ref|YP_001088777.1| putative protein export chaperone [Clostridium difficile 630]
 gi|255101406|ref|ZP_05330383.1| putative protein export chaperone [Clostridium difficile QCD-63q42]
 gi|115251317|emb|CAJ69148.1| Peptidyl-prolyl cis-trans isomerase, PpiC-type [Clostridium
           difficile]
          Length = 380

 Score = 88.6 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/298 (9%), Positives = 84/298 (28%), Gaps = 16/298 (5%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQE----LIVETL 85
           + +      SS +  TI  + IT   + KR+  L        +    ++     +I   +
Sbjct: 78  LPATSKHYNSSEVVATIGDKKITGEMLRKRMEPLFYLNAKTTMTDDEIRSYESNMIETMI 137

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
               +         +  N        N   S E       ++ +      +      +  
Sbjct: 138 TSDILSSEAAKEKISITNDQLDAQYNNLMSSIESAMGMTKEEFLKQFDLTEKYIKDDMKK 197

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK-----LQNQGFVQK 200
           ++V + ++ +   +  +   N          +     +L    D+K        +  ++K
Sbjct: 198 ELVASKYLNEKSKVTDKEAENYYNKNKSNYLQVRASHILIKTVDDKGKQVSSSKKAELKK 257

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT- 258
             ++  +            +K++      S G   +  +  +   F+       +   + 
Sbjct: 258 EAEEILKKAQAGEDFATLAKKYSEDSSAESGGDLGFFGKGQMVESFEKAAFALKKGEVSN 317

Query: 259 NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
               +  G   I   D++           + +    +   + +   ++ L+    +  
Sbjct: 318 KLVESDYGYHIIKKTDEKYQP-----FEEVKSDLVSSLTSEKQNLLIQNLKEKYNVKI 370


>gi|90424410|ref|YP_532780.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB18]
 gi|90106424|gb|ABD88461.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB18]
          Length = 347

 Score = 88.6 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/285 (10%), Positives = 80/285 (28%), Gaps = 27/285 (9%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
           + + K+ A    +   +    ++  DI   +A L  +      +  A+            
Sbjct: 68  LTTGKTAAGRGDVVARVGNSNVSADDIRSYVAALGPRDQAALAQDPAL------------ 115

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
                       ++        N  +  E  +   D+Q        +      +   +  
Sbjct: 116 ------------LSQAVRMLLANRLVLQELLAKKWDQQQSVAAQLDRVRESALVELYLQS 163

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
                     E E+       ++  +     +     +   K  ++       K   E +
Sbjct: 164 ASTPPTNFPGEDELQKVYDANRSALLVPRQFQLAQIFVAAPKDADKATEDNANKSLNEIQ 223

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVE 268
            +L          A++    + G   +L E+ + P+ +   +  ++N  ++P     G  
Sbjct: 224 RQLKTPGADFAAIANENDGKNSGDLGWLAENQIRPEIRAQLMGMAKNAISDPVRLDDGWH 283

Query: 269 YIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            + + D +         ++  L  Q    +       Y+ +L   
Sbjct: 284 ILKLIDTKAAYTRTLPEVRDQLIQQMRAERATMLRQAYLTELLKR 328


>gi|170703395|ref|ZP_02894173.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria IOP40-10]
 gi|170131694|gb|EDT00244.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria IOP40-10]
          Length = 260

 Score = 88.6 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 82/278 (29%), Gaps = 47/278 (16%)

Query: 43  RTTINGEVITDGDISKRIALL--KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I        +A L  + Q  + +L++   QEL+   +  QE  + GI    +
Sbjct: 25  IAVVNGTPIPKSRADAMVAQLVQQGQTDSPQLQQAVRQELVNREILMQEAIREGIPNRPD 84

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q++    +   F+ K    E
Sbjct: 85  VKAQV-------------------------------AVAQQTVVLRSMIESFLKKNQPTE 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+ A   ++                +   +       + +            K  +  +
Sbjct: 114 AEVKARYDELVKGAGGNREYHLHHILVDSEQQAKDLIAKIK---------GGAKFEDLAK 164

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAICDKRD 277
           +++       + G   +       P+F    +K  +   T+ P  TQ G   I   D RD
Sbjct: 165 QYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDTPVKTQFGWHIIRADDIRD 224

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +         + AQ     +++    + + LR  A I 
Sbjct: 225 VAP--PPFDQVKAQIAQQLVQQKLQAFEEGLRQQAKIQ 260


>gi|251772782|gb|EES53344.1| putative peptidyl-prolyl cis-trans isomerase [Leptospirillum
           ferrodiazotrophum]
          Length = 307

 Score = 88.6 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/306 (6%), Positives = 63/306 (20%), Gaps = 31/306 (10%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL--------KLQ 66
           +   + +  IF  +    +   A       T+ G+ ++  D+ +    +           
Sbjct: 1   MTARFRLAFIFLFLAASCHAKEAPLEGAVATLAGQPVSVADLRETARFMGVGGVADRPFT 60

Query: 67  KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
                  K   +E I + L  +  ++ GI+     +     +    +           + 
Sbjct: 61  TWTPAFAKTVFEETIYDRLLAEAAQRQGISVSPKEIQEEKKRILAISAPEGGRPVELSE- 119

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
                         + +   ++      +                N     Y        
Sbjct: 120 --------------ELVRKKLLLAKAAEQVAPAPEISRKAALAEYNRRKGHYETPERALV 165

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
                                +              +        G        ++   F
Sbjct: 166 RDIVVRSEDEGKA-----ILTALAAGNSFSALARAKSLSPEGAKGGLLPPYALGEMPALF 220

Query: 247 QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEY 304
                      +    +  G   + +             ++  +          +  A++
Sbjct: 221 ALAFSMKPGEVSPLLSSPYGYHILKLVKILPSADLPFRKVRDRIERHLREKAQREALAQW 280

Query: 305 VK-KLR 309
           +  K+R
Sbjct: 281 LAGKIR 286


>gi|186475788|ref|YP_001857258.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phymatum STM815]
 gi|184192247|gb|ACC70212.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phymatum STM815]
          Length = 259

 Score = 88.6 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 79/278 (28%), Gaps = 48/278 (17%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKING--ELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I        +A L  Q      +L++   +EL+   +  QE  + GI     
Sbjct: 25  IAVVNGTPIPKSRADALVAQLVQQGQQDSPKLQQAVREELVNREILMQEAIREGIPSKPE 84

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q++    +   ++ K    +
Sbjct: 85  VKAQV-------------------------------AVAQQTVVLRALIESYVKKNQPTD 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+ A   ++      +      +              +++ KD            +  +
Sbjct: 114 AEVKAKYDELVKQIGGKEYHLHHILV----------ENEQQAKDLIAKIKGGASFEDLAK 163

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT-NPYVTQKGVEYIAICDKRD 277
           +F+       + G   +       P+F    +K  +   T  P  TQ G   I + D R 
Sbjct: 164 QFSKDPGSGKNGGDLDWSDPKAYVPEFAAAAEKLQKGQMTDEPVHTQFGWHIIRVDDVRQ 223

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                     + AQ      ++    + + LR+ A + 
Sbjct: 224 TPP--PPFEQVKAQIAQQMQQEKLQAFEENLRAKAKVQ 259


>gi|58040109|ref|YP_192073.1| peptidyl-prolyl cis-trans isomerase precursor [Gluconobacter
           oxydans 621H]
 gi|58002523|gb|AAW61417.1| Peptidyl-prolyl cis-trans isomerase precursor [Gluconobacter
           oxydans 621H]
          Length = 308

 Score = 88.6 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 65/270 (24%), Gaps = 50/270 (18%)

Query: 43  RTTINGEVITDGDISKRIALLKLQK---INGELEKIAVQELIVETLKKQEIEKSGITFDS 99
             T+NG  IT GD+ +    L  Q        L  + V +L+ +   +   EK G+    
Sbjct: 51  IATVNGAKITLGDVQRAAGNLPPQARQIQPSVLVPLIVNQLVDQKAVQFAAEKEGLNHKP 110

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
           +         A     +                               ++        + 
Sbjct: 111 DVKAAMDAAAANALQNA------------------------------YLEEKVGPLVTDS 140

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
            M               E   R +L              + + KD      +        
Sbjct: 141 AMHDFYQSHYANKKPEEEIHARHIL-----------VDSEAQAKDIIAQLGKGADFGKLA 189

Query: 220 EKFASK--IHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDK 275
            + +        + G   +  + D+ P F         N  +  P  TQ G   I +   
Sbjct: 190 AQLSKDKGSAGANGGDLGWFKKEDMLPAFSAAAFAMKPNTISQTPVHTQYGWHVIQVLAT 249

Query: 276 R--DLGGEIALKAYLSAQNTPTKIEKHEAE 303
           R   +     +   +  +    K+      
Sbjct: 250 RTAPIPTFDQVHDQVRQELIRDKVRDIVQA 279


>gi|296450315|ref|ZP_06892075.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP08]
 gi|296878727|ref|ZP_06902731.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP07]
 gi|296260876|gb|EFH07711.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP08]
 gi|296430301|gb|EFH16144.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP07]
          Length = 380

 Score = 88.6 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/298 (9%), Positives = 85/298 (28%), Gaps = 16/298 (5%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQE----LIVETL 85
           + +      SS +  TI  + IT   + KR+  L        +    ++     +I   +
Sbjct: 78  LPATSKHYNSSEVVATIGDKKITGEMLRKRMEPLFYLNAKTTMTDDEIRSYESNMIETMI 137

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
               +         +  N        N   S E       ++ +      +      +  
Sbjct: 138 TSDILSSEAAKEKISITNDQLDAQYNNLMSSIESAMGMTKEEFLKQFDLTEKYIKDDMKK 197

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK-----LQNQGFVQK 200
           ++V + ++ +   +  +   N          +     +L    D+K        +  ++K
Sbjct: 198 ELVASKYLNEKSKVTDKEAENYYNKNKNNYLQVRASHILIKTVDDKGKQVSNSKKAELKK 257

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT- 258
             ++  +            +K++      S G   +  +  +   F+       +   + 
Sbjct: 258 EAEEILKKAQAGEDFATLAKKYSEDSSAESGGDLGFFGKGQMVESFEKAAFALKKGEVSN 317

Query: 259 NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
               +  G   I   D++           + +    +   + ++  ++ L+    +  
Sbjct: 318 KLVESDYGYHIIKKTDEKYQP-----FEEIKSDLVSSLTSEKQSLLIQNLKEKYNVKI 370


>gi|304382089|ref|ZP_07364600.1| peptidyl-prolyl cis-trans isomerase [Prevotella marshii DSM 16973]
 gi|304336687|gb|EFM02912.1| peptidyl-prolyl cis-trans isomerase [Prevotella marshii DSM 16973]
          Length = 473

 Score = 88.6 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/270 (12%), Positives = 76/270 (28%), Gaps = 15/270 (5%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQ--KINGELEKIAVQELIVETLKKQEIE 91
              ++   +   +  E I   D+       + +  K  G+ +    ++L V+ L   +  
Sbjct: 43  NPASVIDEVIWVVGDEPILKSDVEMMRQQGEAEGMKFPGDPDCSIPEQLAVQKLFLHQAA 102

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV--- 148
              I+     +N    Q                + +       +Q L        ++   
Sbjct: 103 LDSISVTETEINQSIDQQINYWIQMIGSREKLEEYRKQSITQIRQELHDDFKNRQMIHKM 162

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
           +   +        E+ A  + M   ++        +  I       Q  + +   +  + 
Sbjct: 163 REKLVEGISVTPGEVRAYFRDMPKDSIPFVPTEVEVQIITRTPKIPQEEINRVKDELRQY 222

Query: 209 RLRLPKDCNKLEKFASKIH-----DVSIGKAQYLLESDLHPQFQNLLKKSQN--NTTNPY 261
             R+ K        A             G+  Y     L P F ++     +    +   
Sbjct: 223 TERVNKGETSFATLARLYSEDPGSARQGGELDYTGRGMLDPAFASVAFNLTDPKKISKVV 282

Query: 262 VTQKGVEYIAICDKRDLGGEIALKAYLSAQ 291
            T+ G   I + DKR   G+     ++  +
Sbjct: 283 ETEFGYHIIQLIDKR---GDKVKVRHILKK 309


>gi|229586913|ref|YP_002845414.1| Protein export protein prsA precursor [Rickettsia africae ESF-5]
 gi|228021963|gb|ACP53671.1| Protein export protein prsA precursor [Rickettsia africae ESF-5]
          Length = 282

 Score = 88.6 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 82/301 (27%), Gaps = 38/301 (12%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           + +IF  V ++S  ++A   ++  T  G  + +  I K        +    ++       
Sbjct: 4   LSVIFLSVSMLSGIAFADKDKVVATYKGGEVKESQIMKEFKPQLNLQSGETIKN------ 57

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
                                     ++   N  L  E+ +              +    
Sbjct: 58  --------------FDDFPPQDQEKLIKIYINNLLLKEEVAKSNITSSKEFQEKLENAKN 103

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           Q    +++ N       +   +   NK         +  +  +L              QK
Sbjct: 104 QLAQQELLANYIKSNITDKMFDDEYNKYVGNLKGKEQIKVAHIL-----------VKSQK 152

Query: 201 RIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYL---LESDLHPQFQNLLKK-SQN 255
              D +    +        E+ +  K    + G   Y+       L P+F+        N
Sbjct: 153 EANDIKTKLSKGGNFTKLAEELSLDKASASNGGVIGYILLNQPGQLVPEFEKKAFALKVN 212

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             + P  T  G   I + +K+ +   I  K             +   +Y+  L + A + 
Sbjct: 213 EVSTPVKTDFGWHIIKVLEKKPVP--IPTKEEAKVTIDNILAAEILKKYIADLEAKANLK 270

Query: 316 Y 316
            
Sbjct: 271 I 271


>gi|282882218|ref|ZP_06290857.1| foldase protein PrsA [Peptoniphilus lacrimalis 315-B]
 gi|281297983|gb|EFA90440.1| foldase protein PrsA [Peptoniphilus lacrimalis 315-B]
          Length = 375

 Score = 88.2 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 87/300 (29%), Gaps = 14/300 (4%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK-INGELE 73
            L  + V ++  ++ +           +   +N   I   D  K  A+ + Q   N   +
Sbjct: 2   FLKKFTVAVLSGLMLVSLSACGKGPEGVAAKVNDVEIPMEDFYKSYAIRRNQYVANAGGD 61

Query: 74  KIAVQELIV----ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
           +  ++  I     ++    +     IT    T      Q A    +  ED          
Sbjct: 62  ESVLEGPIDPTGKQSKLTVDQYLKDITIKDLTETEIIKQDAAANNIKVEDSEIQKILDQY 121

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKY------GNLEMEIPANKQKMKNITVREYLIRTV 183
                        +    +  D++ +            +      K+ +  V++Y     
Sbjct: 122 KAQLGGDEQFKAYLDSLGIPLDYLKEVLKNQTLVGKYTQEKNKNIKVTDDDVKKYYDEHK 181

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL 242
                           K+  + ++   +  K     +K +       + G         +
Sbjct: 182 DDFFKAKASHILVDDLKKANEIKKEIDKGAKFEEMAKKESKDTGSATNGGDLGEFTNGQM 241

Query: 243 HPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE 301
              F + + K  +   ++P  +  G   I + +++    +  +K  + ++ T  K EK  
Sbjct: 242 VQSFNDAIKKMEKGEISDPIKSDFGFHIIKLKERKPRTFDE-VKDEIKSKLTQEKYEKAI 300


>gi|260909467|ref|ZP_05916171.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260636392|gb|EEX54378.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 483

 Score = 88.2 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/293 (9%), Positives = 79/293 (26%), Gaps = 16/293 (5%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQ--KINGELEKIAVQELIVETLKKQEIE 91
              ++   +   +  E I   D+       + +  K  G  +    ++L V+ L   +  
Sbjct: 51  PEASVVDEVIWVVGDEPILKSDVEAARLQAENEGHKFKGNPDCSIPEQLAVQKLFLHQAA 110

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV--- 148
              +    + ++    +                + +       +Q +        ++   
Sbjct: 111 IDSLEVSESEISQGIEEQINYWIQMVGSKEKLEEYRKQTITEMRQSMHDDYKNNRLIAMM 170

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
           K   +        ++    + +   ++        +  I  N       V +      E 
Sbjct: 171 KEKLVSDVKVSPADVRKFFKDLPADSIPMVPTMVEVEIITQNPKVKTEEVNRVKDQLREY 230

Query: 209 RLRLPKDCNKLEKFASKIH-----DVSIGKAQYLLESDLHPQFQNLLKK--SQNNTTNPY 261
             R+ K        A             G+  +   +   P F  +       N  +   
Sbjct: 231 TDRVTKGETTFATLARLYSEDPGSARQGGELGFTGRAAFDPAFAAVAFNLTDPNKISKIV 290

Query: 262 VTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE-KHEAEYVKKLRSNAI 313
            T+ G   I + DKR   G+     ++  +   ++ +       +  + S+  
Sbjct: 291 ETEFGYHIIQLIDKR---GDKVNVRHILLKPNVSQDDIDRSKARLDSIASDIK 340


>gi|138894238|ref|YP_001124691.1| protein export protein prsA [Geobacillus thermodenitrificans
           NG80-2]
 gi|196251144|ref|ZP_03149822.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp.
           G11MC16]
 gi|226712005|sp|A4IKU2|PRSA_GEOTN RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|134265751|gb|ABO65946.1| Protein export protein prsA [Geobacillus thermodenitrificans
           NG80-2]
 gi|196209342|gb|EDY04123.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp.
           G11MC16]
          Length = 278

 Score = 88.2 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/304 (10%), Positives = 86/304 (28%), Gaps = 41/304 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +  + +      +  +S  +   S  +  T NG  IT  +    +           + K 
Sbjct: 1   MKKWMMATAVVSLMALSACNNGDSEAVVETKNG-AITKDEFYNEMK--------ERVGKT 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +++LI E +  ++ + +    D                      +           + +
Sbjct: 52  VLRDLIDEKVLSKKYKVTDEEIDREIERI--------------KEAYGTQYDLAVQQNGE 97

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           + +        +     +      + E+        +    +     +L           
Sbjct: 98  KVIREMIKLDLLRAKAAIEDIKVTDKELKEYY----DNYKPKVRASHIL----------- 142

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              +K  K+ +    +        ++++       + G   +     +  +F+    K  
Sbjct: 143 VEDEKTAKEVKAKLDKGEDFAKLAKEYSQDPGSASNGGDLGWFGAGKMVKEFEEAAYKLK 202

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE-KHEAEYVKKLRSNA 312
               ++P  T  G   I + DK        +K  ++ +   +K++       V KL  +A
Sbjct: 203 VGEVSDPIKTDYGYHIIKVTDKEKKKTFDKMKEEITFEVKRSKLDPSTMQSKVDKLVKDA 262

Query: 313 IIHY 316
            +  
Sbjct: 263 NVKI 266


>gi|262278898|ref|ZP_06056683.1| ppic-type ppiase domain-containing protein [Acinetobacter
           calcoaceticus RUH2202]
 gi|262259249|gb|EEY77982.1| ppic-type ppiase domain-containing protein [Acinetobacter
           calcoaceticus RUH2202]
          Length = 351

 Score = 88.2 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/270 (10%), Positives = 82/270 (30%), Gaps = 6/270 (2%)

Query: 50  VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
            I+D D+      LK  +    L        +    +  +  +S      + +      +
Sbjct: 73  KISDQDVEN---FLKSPQGQAALGNQVRVIHMRIAGENPQEVQSVAQEVRSNLAQSNDIN 129

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
           A     +A       D      +     LA +       +   ++   +    +   ++K
Sbjct: 130 ALKKLSTANVKVEGADMGFRPLSDIPAELAARITPLQDGQTTDLISVRDGVHVLKLIERK 189

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HD 228
                      +T    I  +++ +    ++ I +  +              +++     
Sbjct: 190 QNEQKALVPQFQTRHILIQPSEVVSLENAKQIIDNIYKRLKAGDDFATLAATYSNDTGSA 249

Query: 229 VSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE-IALKA 286
              G   ++    + P+F + + +      + P+ TQ G   + + +KR+        + 
Sbjct: 250 RDGGSLGWVTPGMMVPEFDKKMQEIPVGEISEPFQTQFGWHILQVTEKREKDMTHEYQER 309

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                    +       +++++R+NA +  
Sbjct: 310 MARQILGERQFNTEIDSWLREVRANAYVEI 339


>gi|154494371|ref|ZP_02033691.1| hypothetical protein PARMER_03726 [Parabacteroides merdae ATCC
           43184]
 gi|154085815|gb|EDN84860.1| hypothetical protein PARMER_03726 [Parabacteroides merdae ATCC
           43184]
          Length = 454

 Score = 88.2 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/274 (10%), Positives = 83/274 (30%), Gaps = 12/274 (4%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL--QKINGEL 72
           ++     + I   +  V Y    +   I   +  + I   DI  +   L+   Q+ +G+ 
Sbjct: 1   MMKKILTVFILACLSCVVYAQDNVIDEIVWVVGDDAILRSDIESQRLYLQNEGQRFDGDP 60

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
             +  +++ ++ L   + +   +    N V     +                +  G   +
Sbjct: 61  YCVLPEQMAIQKLFLNQAKIDSVEVSENQVIQETDRWINFAINQMGSKEKLEEYFGKKIS 120

Query: 133 HFKQYLAIQSIWPDVVKN---DFMLKYGNLEMEIPANKQKMKNIT----VREYLIRTVLF 185
             K       +    V+      + +      E+     ++   +         ++ +  
Sbjct: 121 QLKDERKEMIMEQQTVEQMKRQLIGEIKLTPSEVRKYYSQLSKDSLPNIPTTVEVQIITM 180

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHP 244
                  +      +  +  ++      +       ++         G+  +L ++ L P
Sbjct: 181 EPKIPFEETDAIKARLRQFTDDINSGKYEFSTLARLYSEDPESAKRGGELGFLGKTSLLP 240

Query: 245 QFQNLLKKSQN--NTTNPYVTQKGVEYIAICDKR 276
           +F N+    ++    +    T+ G   I + +KR
Sbjct: 241 EFANVAFNLKDPKKISQIVQTEYGYHIIQLIEKR 274


>gi|15896462|ref|NP_349811.1| peptidylprolyl isomerase [Clostridium acetobutylicum ATCC 824]
 gi|15026287|gb|AAK81151.1|AE007817_5 Parvulin-like peptidyl-prolyl isomerase, PRSA B.subtilis ortholog
           [Clostridium acetobutylicum ATCC 824]
          Length = 353

 Score = 88.2 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/330 (14%), Positives = 104/330 (31%), Gaps = 38/330 (11%)

Query: 14  KLLTTYFVLIIFCIVPIVSYK----SWAMSSRIRTTI-NGEVITDGDISKRIALLKLQKI 68
           K + T  ++ +F    +          A++S++  TI   + IT G+I K       Q  
Sbjct: 25  KQIATALLVGMFTFSAVGCSMVEKRPEAINSKVVATIYGNQTITRGEIDKLAKGTVEQLK 84

Query: 69  NG----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
           +                 + ++  +  LI + +  ++ +   IT   + +          
Sbjct: 85  SQYGDSYEKNEEAVAALKKQKEQILTSLIDQKIFLKKAKDQKITLTKDEIKTNVDDVYAQ 144

Query: 113 TGLSAEDFSSFL---DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
                +  S F     + G     FK  L  ++I   +++   +      + E       
Sbjct: 145 YQQEFKTESEFKSQLSQYGYTVAEFKDQLKNRAISNKLIQQ-VVKDVKVSDDEAKKYYDS 203

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
            KN   +      +   +   + + +    +          +        ++ ++     
Sbjct: 204 HKNSYTQSPNTVHLAHILVKTEKEAKAVKARI--------DKGEDFATVAKQVSTDGSKE 255

Query: 230 SIGKAQYLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIAL 284
             G    + E+D +         LK + N  + P  TQ G   I    K +  +    ++
Sbjct: 256 KGGDLGDIQENDSNYDKTFMAAALKLNDNQVSAPVHTQFGWHVIKCIKKTEYPVKDFNSV 315

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           K  +      TK +    + +KK  S A I
Sbjct: 316 KDDIKQTVLSTKQKSVYQKTLKKWESQANI 345


>gi|158520285|ref|YP_001528155.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfococcus
           oleovorans Hxd3]
 gi|158509111|gb|ABW66078.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfococcus
           oleovorans Hxd3]
          Length = 631

 Score = 88.2 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/255 (10%), Positives = 71/255 (27%), Gaps = 9/255 (3%)

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLK--KQEIEKSGITFDSNTVNYFFVQHARNTG 114
           ++  A    Q     L    ++ LI +++     E  +     ++       V  A    
Sbjct: 141 NRMTAAAFEQSQKQGLLVDKLRTLITDSVLVSDNEARQWFDWENARVKITAAVFAAEGRT 200

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
                 ++         + +K     +  +  V    ++ +    E EI    Q  ++  
Sbjct: 201 DVDPAEAAVAAYYEEHKDQYKTPEKRKITYVRVAPARYLSEVKVTEEEIADFYQANQDFY 260

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR----LRLPKDCNKLEKFASKIHDVS 230
             E  +      I   +  ++  V++  + A +                 +++       
Sbjct: 261 WNEETVEARHILISLEQDADEARVEEARQKAADIYVMVTDGGKDFAETARQYSEGPSAGE 320

Query: 231 IGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS 289
            G        D+   F +     +    + P  +Q G   I +   +           + 
Sbjct: 321 GGYLGAFTREDMVAPFSEKAFSMAPGEISEPVRSQFGWHIIKVE--KVNAAFTTPLDEVR 378

Query: 290 AQNTPTKIEKHEAEY 304
           A      +++   EY
Sbjct: 379 ADIEKQLLDQKAGEY 393



 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 52/188 (27%), Gaps = 17/188 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +    S  I  +     L+I   + +              T+N E++T  +     
Sbjct: 1   MLQFMRQKASSII--IKGVLSLVILAFIFLGIGNFREQQEVTAATVNEEIVTGREFQYTY 58

Query: 61  ALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
             L                     L++ A+ +LI E +  Q+ +K G+    + +     
Sbjct: 59  QRLLDTYRQQFGGALNDDLLKMLNLKEQAMNQLISEKIILQQADKLGLNVSDSELAATIS 118

Query: 108 --QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
                +N G   +   + L +         +    Q +  D ++          + E   
Sbjct: 119 SIPAFQNNGRFDKTRYNRLLQSNRMTAAAFEQSQKQGLLVDKLRTLITDSVLVSDNEARQ 178

Query: 166 NKQKMKNI 173
                   
Sbjct: 179 WFDWENAR 186


>gi|227499517|ref|ZP_03929624.1| possible peptidylprolyl isomerase PrsA [Anaerococcus tetradius ATCC
           35098]
 gi|227218396|gb|EEI83647.1| possible peptidylprolyl isomerase PrsA [Anaerococcus tetradius ATCC
           35098]
          Length = 360

 Score = 88.2 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 90/278 (32%), Gaps = 23/278 (8%)

Query: 40  SRIRTTINGEVITDGDISKRIALL-KLQKINGELEKIAVQELIVETLKKQEIEKSGITFD 98
            +    ++G+ I+  D    ++    +     +L+   V  ++ + L   +I+K+ I  D
Sbjct: 46  DKTVAIVDGQKISKDDYKSEMSFYASMLASQQQLKNSIVTMMVQDKLIANDIKKNNIKID 105

Query: 99  SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGN 158
              V+   +Q  +N G   +   +  D         +       +     +  F      
Sbjct: 106 DKDVDNALMQSVQNFGGQEQFDKTLDDYNMDIKKFKETLKKD--LMYKKHREWFDENNKV 163

Query: 159 LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
            + EI    ++ K+   +      ++              ++  K+ +            
Sbjct: 164 SDDEIKKYFEENKDQFTKVDASHILV------------DDEETAKEIKAKLDNGEDFAKL 211

Query: 219 LEKFASK-IHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKR 276
            ++++       + G+     +  +  +F+       +   +NP  +Q G   I I    
Sbjct: 212 AKEYSKDTASAKNGGELGSFGKGQMVKEFEEAAFSMKEGEISNPVKSQFGYHIIKINSI- 270

Query: 277 DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                   K  ++ +    K     A+Y+KKL   A +
Sbjct: 271 -SDSYEKSKEEITKKIKDKK----YADYIKKLHDEAHV 303


>gi|196044409|ref|ZP_03111645.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus 03BB108]
 gi|196025048|gb|EDX63719.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus 03BB108]
          Length = 285

 Score = 88.2 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/304 (10%), Positives = 79/304 (25%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + +++      SS    T     IT  D  K++             K  
Sbjct: 4   KHIFIITALISILMLAACGQKNSSATVATATDSTITKSDFEKQLK--------DRYGKDM 55

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           + E+I + +  ++ + S    +                +  +    F           + 
Sbjct: 56  LYEMIAQDVITKKYKVSDDDVEKEVQ-----------KVRNQYGDQFTAVLENNRLKDEA 104

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           E++                      +           
Sbjct: 105 DFKKQIKFKLAMNEAIKKSVTEKEVKA--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ ++            ++ +  +      G   Y     + P+F+    K   
Sbjct: 145 SDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYKLKV 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              +NP  +  G   I + DK++L     +K  +       +I       + ++K    A
Sbjct: 205 GQISNPVKSPNGYHIIKLTDKKELKPYDEVKDSIRKNLEEERIADPTFSHKLLQKELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|318604634|emb|CBY26132.1| peptidyl-prolyl cis-trans isomerase ppiD [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 628

 Score = 88.2 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/399 (9%), Positives = 107/399 (26%), Gaps = 87/399 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + ++ +  +    +++ F +  + SY     +      +NG+ I+   + + +
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSNDF-AAKVNGQEISRAQLEQAV 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                    +L +  + +L+   L  Q  +K G+T     V  
Sbjct: 60  QSERSRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKD 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ----------------------- 141
              Q          D + +L+          Q+  +Q                       
Sbjct: 120 AIRQAPYFQTDGKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPVE 179

Query: 142 -------SIWPDVVK------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                   +    V+           +    + E+ A   + KN  +    ++    ++ 
Sbjct: 180 AQAMSALILQQREVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISFIAMD 239

Query: 189 DNKLQNQG-------------------------------FVQKRIKDAEESRLRLPKDCN 217
              +Q++                                  +   K A +   +      
Sbjct: 240 AAAMQDKITVTEEDIAAYYDQHKSTYTKPEQRNYSVIQFKTEAEAKTALDELKKGADFAA 299

Query: 218 KLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
             ++ ++  I   + G+  +L       + +      +   ++   +  G   + +   +
Sbjct: 300 IAKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNGIK 359

Query: 277 DLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
               +    +   L+ Q    K         +K+   A 
Sbjct: 360 PAQVKPLSEVHDALAKQVKQEKAVDAYYALQQKVSEAAT 398


>gi|238759258|ref|ZP_04620425.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia aldovae ATCC 35236]
 gi|238702545|gb|EEP95095.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia aldovae ATCC 35236]
          Length = 628

 Score = 88.2 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/399 (9%), Positives = 111/399 (27%), Gaps = 87/399 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + ++ +  +    +++ F +  + SY     +      +NG+ I+   + + +
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSNDY-AAKVNGQDISRAQLEQAM 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                    +L +  + +L+   L  Q  +K G++     V  
Sbjct: 60  QSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAQKLGLSASDAQVKE 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ----------------------- 141
              Q       +  D + +L+         +Q+  +Q                       
Sbjct: 120 AIRQAPYFQTDNKFDNNKYLELVNRMGYTPEQFAQLQRQQLINQQLLQAFGDTGFVLPIE 179

Query: 142 -------SIWPDVVK------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                   +    V+           +    + E+ A  ++ KN  +    ++    ++ 
Sbjct: 180 AQAMSELILQQRDVRLATIDLKALQAQQKVTDEELKAYYEQNKNSFIAPEQMKVSFIAMD 239

Query: 189 DNKLQNQG-------------------------------FVQKRIKDAEESRLRLPKDCN 217
              +Q++                                  +   K A +   +      
Sbjct: 240 AAAMQDKITVTEEDIAAYYEQHKSSYTQPERRNYSVIQFKTEAEAKAALDELKKGADFAA 299

Query: 218 KLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
             ++ ++  I   + G+  +L       + +      +   ++   +  G   + + D +
Sbjct: 300 MAKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNDIK 359

Query: 277 D--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
              +     +   L+ Q    K         +K+   A 
Sbjct: 360 PELVKPLSEVHEALAKQVKQEKAVDAYYALQQKVSEAAT 398


>gi|229095750|ref|ZP_04226729.1| Foldase protein prsA 2 [Bacillus cereus Rock3-29]
 gi|229101848|ref|ZP_04232562.1| Foldase protein prsA 2 [Bacillus cereus Rock3-28]
 gi|229114700|ref|ZP_04244114.1| Foldase protein prsA 2 [Bacillus cereus Rock1-3]
 gi|228668765|gb|EEL24193.1| Foldase protein prsA 2 [Bacillus cereus Rock1-3]
 gi|228681431|gb|EEL35594.1| Foldase protein prsA 2 [Bacillus cereus Rock3-28]
 gi|228687583|gb|EEL41482.1| Foldase protein prsA 2 [Bacillus cereus Rock3-29]
          Length = 285

 Score = 88.2 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/304 (10%), Positives = 76/304 (25%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + ++S       S    T     IT  D  K++             K  
Sbjct: 4   KHIFIITALISILMLSACGQKNGSATVATATDSTITKSDFEKQLK--------DRYGKDM 55

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           + E++   +  ++ + S    D+           +  G    +                 
Sbjct: 56  LYEMMAYDVITKKYKVSDDDVDNEVQKVKNQFGDQFKGFLENNRLKDEADF--------- 106

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 107 --KNQMKFKLALHEAVKKSVTEKDVKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ ++            ++ +  +      G   Y     + P+F+    K   
Sbjct: 145 SDENAAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFNSGTMAPEFETAAYKLKV 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              +NP  +  G   I + DK+DL     +K  +       +I       + ++     A
Sbjct: 205 GEISNPVKSTNGYHIIKLTDKKDLKPYDEVKDSIRKNLEEERIADPTFSQKLLQDELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|330859944|emb|CBX70273.1| peptidyl-prolyl cis-trans isomerase D [Yersinia enterocolitica
           W22703]
          Length = 628

 Score = 88.2 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/399 (9%), Positives = 107/399 (26%), Gaps = 87/399 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + ++ +  +    +++ F +  + SY     +      +NG+ I+   + + +
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSNDF-AAKVNGQEISRAQLEQAV 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                    +L +  + +L+   L  Q  +K G+T     V  
Sbjct: 60  QSERSRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKD 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ----------------------- 141
              Q          D + +L+          Q+  +Q                       
Sbjct: 120 AIRQAPYFQTDGKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPVE 179

Query: 142 -------SIWPDVVK------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                   +    V+           +    + E+ A   + KN  +    ++    ++ 
Sbjct: 180 AQAMSALILQQREVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISFIAMD 239

Query: 189 DNKLQNQG-------------------------------FVQKRIKDAEESRLRLPKDCN 217
              +Q++                                  +   K A +   +      
Sbjct: 240 AAAMQDKITVTEEDIAAYYDQHKSTYTKPEQRNYSVIQFKTEAEAKTALDELKKGADFAA 299

Query: 218 KLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
             ++ ++  I   + G+  +L       + +      +   ++   +  G   + +   +
Sbjct: 300 IAKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNGIK 359

Query: 277 DLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
               +    +   L+ Q    K         +K+   A 
Sbjct: 360 PAQVKPLSEVHDALAKQVKQEKAVDAYYALQQKVSEAAT 398


>gi|332160753|ref|YP_004297330.1| peptidyl-prolyl cis-trans isomerase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664983|gb|ADZ41627.1| peptidyl-prolyl cis-trans isomerase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 628

 Score = 88.2 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/399 (9%), Positives = 107/399 (26%), Gaps = 87/399 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + ++ +  +    +++ F +  + SY     +      +NG+ I+   + + +
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSNDF-AAKVNGQEISRAQLEQAV 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                    +L +  + +L+   L  Q  +K G+T     V  
Sbjct: 60  QSERSRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKD 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ----------------------- 141
              Q          D + +L+          Q+  +Q                       
Sbjct: 120 AIRQAPYFQTDGKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPVE 179

Query: 142 -------SIWPDVVK------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                   +    V+           +    + E+ A   + KN  +    ++    ++ 
Sbjct: 180 AQAMSALILQQREVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISFIAMD 239

Query: 189 DNKLQNQG-------------------------------FVQKRIKDAEESRLRLPKDCN 217
              +Q++                                  +   K A +   +      
Sbjct: 240 AAAMQDKITVTEEDIAAYYDQHKSTYTKPEQRNYSVIQFKTEAEAKTALDELKKGADFAA 299

Query: 218 KLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
             ++ ++  I   + G+  +L       + +      +   ++   +  G   + +   +
Sbjct: 300 IAKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNGIK 359

Query: 277 DLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
               +    +   L+ Q    K         +K+   A 
Sbjct: 360 PAQVKPLSEVHDALAKQVKQEKAVDAYYALQQKVSEAAT 398


>gi|312134560|ref|YP_004001898.1| ppic-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           owensensis OL]
 gi|311774611|gb|ADQ04098.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           owensensis OL]
          Length = 335

 Score = 88.2 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/318 (11%), Positives = 93/318 (29%), Gaps = 20/318 (6%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIAL--- 62
                  +       VL+I  I        +   +R    +NGE IT  + +        
Sbjct: 1   MDKRIKIMLFSIVSIVLLIIVIAVTPEIVKYMDENRAVAIVNGEKITKKEFAINYKSQIN 60

Query: 63  ------------LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
                       +  +    ++++  +  LI+  ++ Q+  K  IT  S        Q  
Sbjct: 61  YYGLDKAFLSQKVGDKTYEQQIKEDILDSLILRQIELQQARKRNITLTSAEKKAIDQQIE 120

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
           +    S         +        +     Q I   ++   +     + +      +   
Sbjct: 121 QYKSDSQSGAEF--KQYLQTIGATENDFKDQVIKSQIISKLYDEVTKSQKASDAEIESYY 178

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDV 229
            +       ++        N  + +   +K+ ++  +            +K++       
Sbjct: 179 NSHKSDFVEVKASHILFKVNDSKEETAKKKKAEEVLQMIKSGQSFEKLAQKYSEDETTKQ 238

Query: 230 SIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
             G   Y  +  +  +F++     +    +N   T  G   I + DK+ L     +K  +
Sbjct: 239 KGGDLGYFRKGQMVKEFEDAAFSLNIGEVSNVVKTSYGFHIIKVADKKQLSLN-DVKDEI 297

Query: 289 SAQNTPTKIEKHEAEYVK 306
            +     K +++    ++
Sbjct: 298 KSTVESQKKDEYYKSLIE 315


>gi|307729669|ref|YP_003906893.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1003]
 gi|307584204|gb|ADN57602.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1003]
          Length = 259

 Score = 88.2 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 82/278 (29%), Gaps = 48/278 (17%)

Query: 43  RTTINGEVITDGDISKRIALL--KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I        I  L  + Q+ + +L+    +EL+   +  QE  + G      
Sbjct: 25  IAVVNGTPIPKARADALIEQLVHQGQQNSSQLQMAVREELVNREVLMQEALRRG------ 78

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                     Q   D   +  +A Q++    +  DF+ K    +
Sbjct: 79  -------------------------LQNRPDIKAQIAVAQQTVVLRALIEDFVKKNTPSD 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+ A    +      +      +              +++ KD               +
Sbjct: 114 AEVTARYNALIKDAGGKEYHLHHILVDN----------EQQAKDLIAKIKGGASFEELAK 163

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTT-NPYVTQKGVEYIAICDKRD 277
           +F+       + G   +       P+F N      +   +  P  TQ G   I + D R+
Sbjct: 164 QFSKDPGSGKNGGDLDWSDPKAYVPEFANAATHLQKGQMSDEPVHTQFGWHIIRVDDVRN 223

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +         + AQ      ++    + + LR NA I 
Sbjct: 224 ITP--PPLEQVRAQIVQQIQQEKLQAFEEGLRKNAKIQ 259


>gi|119952910|ref|YP_945119.1| basic membrane protein [Borrelia turicatae 91E135]
 gi|119861681|gb|AAX17449.1| basic membrane protein [Borrelia turicatae 91E135]
          Length = 344

 Score = 88.2 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/341 (14%), Positives = 103/341 (30%), Gaps = 37/341 (10%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTIN---GEVITDGDISKRIALLKL 65
           +   +  +      ++F +V I S+      +     IN    E+IT  +   ++  LK 
Sbjct: 2   IDIKVIFMGNVLCFLLFFVVGITSFAQ----NTPVVIINLHSNEIITKTEFDSKVNTLKK 57

Query: 66  QKI---NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
            +    +    K  +Q LI + L  QE  K GI  +   V            L+ E    
Sbjct: 58  TQGRDLSNAERKQVLQILIADVLFGQEALKQGIKVEDAEVMQTIRTQFGLLNLTDEQIKQ 117

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVV----KNDFMLKYGNLEMEIPANKQKMKNITVREY 178
            ++ QG   N     +        ++    +  F       E E+    +  K   V   
Sbjct: 118 MVESQGTNWNELLSSMKRSLSAQKLILKMAQPKFSEIKIPGEKEVVEYYEANKTKFVNPD 177

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYL 237
           + R           +    +        + + +       + K+++     V  G   +L
Sbjct: 178 IARISHVFFSSKDKKRSEVLANAKDIVNQIKSKKITFEEAVRKYSNDEGSKVKNGDLGFL 237

Query: 238 LESDLH-------PQFQNLLKKSQNNTTNPYVTQKGVEYIAIC-----------DKRDLG 279
              D +          + +    + + + P  +++G   + +            DK    
Sbjct: 238 ARGDQNAQNVLGLDFVKEVFMLKKGDISQPISSKEGFHIVKVTEMYSQRFLGLQDKISPN 297

Query: 280 GEIALKAYLSAQNTPTKIEKHE----AEYVKKLRSNAIIHY 316
            ++ +K  +         ++       E   KL  +A I  
Sbjct: 298 VDMTVKDAIKNNMVNIHQQQIVARVQQEIYDKLNKSASIQI 338


>gi|332981378|ref|YP_004462819.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mahella
           australiensis 50-1 BON]
 gi|332699056|gb|AEE95997.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mahella
           australiensis 50-1 BON]
          Length = 350

 Score = 88.2 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/345 (12%), Positives = 100/345 (28%), Gaps = 36/345 (10%)

Query: 9   LSDFIKLLTTYFV-LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK 67
           +  F+++     V + IF    +V+             +NG+ I   D  K+        
Sbjct: 1   MKRFVRMTALAMVAIFIFAGCSLVTVDPEKEKQLPVAEVNGDKILKADYVKQYDAYINAV 60

Query: 68  ING-------------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
                                 ++ +  V+ LI + L  Q+ +K+ I    +       Q
Sbjct: 61  EQQYGIDKKTLETSTDYADTLAQMREDIVEGLITQKLVDQQAKKNNIALTDDDKKQVKDQ 120

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
             +      E+  + + KQ        + L         + +         + E+     
Sbjct: 121 LQQLKDAYGEEAFADMLKQQQMTEAELEQLLQGDAVQQKLFDQLTAGITVTDEEVKKYYD 180

Query: 169 KMKNIT---VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE--------SRLRLPKDCN 217
           + K+          +  +L SIP++K       +K   D  +                  
Sbjct: 181 ENKDTEFTDPEMVKVSHILISIPEDKYSADETTKKTEYDKIKPEAEQVLAKAKAGDDFAE 240

Query: 218 KLEKFASKI-HDVSIGKAQYLLESDLHPQF--QNLLKKSQNNTTNPYVTQKGVEYIAICD 274
            +++++         G   +  E  + P F   +   K++ + +    T  G   I + +
Sbjct: 241 LVKQYSDDAGTKDQGGTLTFSREDQIEPAFIEASFALKNKGDISGLVQTSYGYHIIRLEE 300

Query: 275 KRDLGG--EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           K           K  +       K        +++ +  + I  Y
Sbjct: 301 KIPSKVHTFEEKKQEIHDTLLQQKKNDKITALIEEWKKGSDIKKY 345


>gi|158321661|ref|YP_001514168.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus
           oremlandii OhILAs]
 gi|158141860|gb|ABW20172.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus
           oremlandii OhILAs]
          Length = 317

 Score = 88.2 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/324 (9%), Positives = 95/324 (29%), Gaps = 38/324 (11%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--- 70
           K LT   + ++   + I       ++  +   I  + +T+ + +K +             
Sbjct: 3   KKLTILIIAMLTMAILITGCSKTGLAEGVVAKIGNKEVTEAEYNKLLDYYLSIATTQYNL 62

Query: 71  -----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
                             L+   +  +++  +   +  ++ +T     V   F ++    
Sbjct: 63  TEEILNTDNGSGMTLLDTLKAEVLDIIVLTEIIADKAAENKVTVTEEEVTKEFEENHVKV 122

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
             S E++   +++  + D   K+ +    I     +        N        ++  +  
Sbjct: 123 MESDENYKKLIEENKLDDAFIKEQIRKDLIAYKYNQFYLEKTEINEAAAKTFYEENPEGF 182

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS-IG 232
              +   + +L              ++  K+               ++++++       G
Sbjct: 183 HNEQVSAKHIL-----------VETEETAKEVIGKLEAGADFAELAKEYSTEPGAEQTGG 231

Query: 233 KAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK-RDLGGEIALKAYLSA 290
              Y  +  + P+F+           + P  T  G   I + DK  +       KA +  
Sbjct: 232 NLGYFKKGRMVPEFEKAAFALEVGKISEPVKTDFGYHVIVVEDKVDESISFEDAKADIVD 291

Query: 291 QNTPTKIEKHEAEYVKKLRSNAII 314
                       +++++    A +
Sbjct: 292 YLKR----LDYQKHLEEALKKANV 311


>gi|289809575|ref|ZP_06540204.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 250

 Score = 87.8 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 76/244 (31%), Gaps = 15/244 (6%)

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
             E   S    D+       V+ ARN     +   ++   Q         +  IQ +   
Sbjct: 5   LPENPTSEQVNDAQRQAESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGI 64

Query: 147 VVKND-----------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +                  G   +++   + + ++I+V E   R +L         +Q
Sbjct: 65  FAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMN-DQ 123

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ 254
               K  + A + +          ++++         G   +       P F++ L K  
Sbjct: 124 QARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKLH 183

Query: 255 -NNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
               + P  +  G   I + D R +   + A K          K  +  A ++++ R++A
Sbjct: 184 KGQISAPVHSSFGWHLIELLDTRKVDKTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASA 243

Query: 313 IIHY 316
            +  
Sbjct: 244 YVKI 247



 Score = 66.6 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 12/137 (8%), Positives = 41/137 (29%), Gaps = 7/137 (5%)

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
           +    +   +     Q++ +   E              +++    +  G+  +    +L 
Sbjct: 3   IALPENPTSEQVNDAQRQAESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELP 62

Query: 244 PQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIE 298
             F        + +   P  +  G   + + D R     +        ++  + +P   +
Sbjct: 63  GIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMND 122

Query: 299 KHEAEYVKKLRSNAIIH 315
           +     ++++   A I 
Sbjct: 123 QQARLKLEEI--AADIK 137


>gi|88860449|ref|ZP_01135087.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
           [Pseudoalteromonas tunicata D2]
 gi|88817647|gb|EAR27464.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
           [Pseudoalteromonas tunicata D2]
          Length = 633

 Score = 87.8 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/408 (9%), Positives = 100/408 (24%), Gaps = 96/408 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+          +    V++ F +  I SY     + +    +NG+ I+    ++  
Sbjct: 1   MLEKIREGSQGLTAKIILGLVILSFALAGIGSYLG-QTTEKPVAVVNGQKISQTTFARAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELI-----------------VETLKK 87
              + +                     + +  +  L+                  E +K+
Sbjct: 60  ENERSRLEQQFGEYFNQIASDPTYMARVREGVIDRLVQQELQTQLANELGLRISDEAIKE 119

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD-------------------KQG 128
           +              N  ++Q  R      + F ++L                       
Sbjct: 120 EIRTLPYFNIGGQFSNDRYLQVIRQMNFQPDTFRNYLRTEMTRSQLVTAVAASDFALPNE 179

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT-------------- 174
           +      Q       +  +  +         E EI       ++                
Sbjct: 180 MVTISQLQTQVRDLDYVLLTADQVSKDITVTEQEISDYYTLNQSQFLSQEQVSVEYVELN 239

Query: 175 ------------------------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
                                         R  +  I  +   ++   + + +D      
Sbjct: 240 AETLPVVKAVTDDEILALYNDNKAQYVEPERRRVAHILVDLGDDEAASEAKAQDLLAKLK 299

Query: 211 RLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK--SQNNTTNPYVTQKGV 267
                    +  +S I    + G   ++    + P F+       ++ + ++   ++ G 
Sbjct: 300 AGADFAQLAQSDSSDIVSAENGGDLDWIDRDMMDPAFEEAAFSLAAKGDISDVVKSEFGF 359

Query: 268 EYIAICD--KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             I + D     +     +K  L+A+       +H  E   +L   A 
Sbjct: 360 HIIKLTDLQAEQIKTLDMVKDELTARLEQDHKTEHFYELQTRLAELAF 407


>gi|261856056|ref|YP_003263339.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halothiobacillus
           neapolitanus c2]
 gi|261836525|gb|ACX96292.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halothiobacillus
           neapolitanus c2]
          Length = 325

 Score = 87.8 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 81/286 (28%), Gaps = 47/286 (16%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKS 93
            +   S +I  TING+     + + ++    L K     E+  +Q +I   L      + 
Sbjct: 57  SAKVTSGKIIATINGQP--LYEENLKVIQSSLPKSKNIPEQDLIQRMIELRLLASAARQE 114

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
           G                             LDKQ       +  +  Q     +      
Sbjct: 115 G-----------------------------LDKQIKTKAQIQNAVDNQLANDYLSDYLSK 145

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
           +K  + E++   N+         +Y    +L    +                 +      
Sbjct: 146 MKVTDAELQPEYNQFVKGYPKTTQYKAAHILVKTKEEADA-----------IIKQLDSGT 194

Query: 214 KDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYI 270
                 ++ +         G+  +     + P+F   + K  +   T  P  +Q G   I
Sbjct: 195 PFDQLAKEKSQDPGSAKQGGELGWFDADQMVPEFSAAVEKLKKGEITQQPVKSQFGWHVI 254

Query: 271 AICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R         A L  Q           + +KKLR+ A I+ 
Sbjct: 255 KLEDTRLAQP--PTFAELKPQLETQYRRAAIEDLIKKLRTKAKINI 298


>gi|313646932|gb|EFS11389.1| PPIC-type PPIASE domain protein [Shigella flexneri 2a str. 2457T]
 gi|332763740|gb|EGJ93978.1| PPIC-type PPIASE domain protein [Shigella flexneri K-671]
          Length = 622

 Score = 87.8 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/395 (9%), Positives = 102/395 (25%), Gaps = 85/395 (21%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
              + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G       
Sbjct: 1   MDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAFN 59

Query: 62  LLKLQKING----------------ELEKIAVQELIVETLKKQEIEK------------- 92
             + +                     L +  +  LI E L  Q   +             
Sbjct: 60  SERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQA 119

Query: 93  ----SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN--------HFKQYLAI 140
                    D    N  +       G++A+ ++  L  Q              F      
Sbjct: 120 IFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGET 179

Query: 141 QSIWPDVVKNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIPD 189
             +   V +   + +               E EI +  ++ KN  +     R     +  
Sbjct: 180 DELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLVA 239

Query: 190 NKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKLE 220
             +Q            ++                                +        +
Sbjct: 240 ATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAK 299

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
           + ++ I    + G   +L ++ +  + +N   K +   +    +  G   + + D +   
Sbjct: 300 EKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAK 359

Query: 280 GE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
            +    ++  ++A+    K         +K+   A
Sbjct: 360 VKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 394


>gi|189463692|ref|ZP_03012477.1| hypothetical protein BACINT_00023 [Bacteroides intestinalis DSM
           17393]
 gi|189438642|gb|EDV07627.1| hypothetical protein BACINT_00023 [Bacteroides intestinalis DSM
           17393]
          Length = 454

 Score = 87.8 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/279 (11%), Positives = 91/279 (32%), Gaps = 12/279 (4%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKR--IALLKLQ 66
           + +F+       +  +  +     Y    +   +   +  E I   ++ +    A  + +
Sbjct: 1   MKNFMN-FKFVVLCALALMTGSAVYGQDNVIDEVVWVVGDEAILKSEVEEARMSAAYEGR 59

Query: 67  KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY---FFVQHARNTGLSAEDFSSF 123
           K +G+   +  +E+ V+ L   +     I    + V     +          S E    +
Sbjct: 60  KFDGDPYCVIPEEIAVQKLFLHQAALDSIEVPESEVIQRVDYMTNMYIANIGSREKMEEY 119

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR-- 181
            +K         +  A + +    ++   + +      E+    + +   ++     +  
Sbjct: 120 FNKTSSQIRETLRENAREGLKVQKMQQKLVGEIKITPAEVRRYFKDLPQDSIPYIPTQVE 179

Query: 182 -TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLE 239
             ++   P   L+    V++R+++  E   +          ++      ++ G+  +   
Sbjct: 180 VQIITQQPKIPLEEIEDVKRRLREYTERVNKGESFSMLARLYSDDRGTAINGGEMPFTGR 239

Query: 240 SDLHPQFQN--LLKKSQNNTTNPYVTQKGVEYIAICDKR 276
             L P F N     +  N  +    ++ G   I + +KR
Sbjct: 240 GYLDPAFANVAFNLQDPNKVSKIVESEYGFHIIQLMEKR 278


>gi|118476746|ref|YP_893897.1| peptidylprolyl isomerase [Bacillus thuringiensis str. Al Hakam]
 gi|225863116|ref|YP_002748494.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus 03BB102]
 gi|229090207|ref|ZP_04221455.1| Foldase protein prsA 2 [Bacillus cereus Rock3-42]
 gi|229183467|ref|ZP_04310692.1| Foldase protein prsA 2 [Bacillus cereus BGSC 6E1]
 gi|118415971|gb|ABK84390.1| protein export protein [Bacillus thuringiensis str. Al Hakam]
 gi|225789473|gb|ACO29690.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus 03BB102]
 gi|228600051|gb|EEK57646.1| Foldase protein prsA 2 [Bacillus cereus BGSC 6E1]
 gi|228693143|gb|EEL46856.1| Foldase protein prsA 2 [Bacillus cereus Rock3-42]
          Length = 285

 Score = 87.8 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/304 (10%), Positives = 79/304 (25%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + +++      SS    T     IT  D  K++             K  
Sbjct: 4   KHIFIITALISILMLAACGQKNSSATVATATDSTITKSDFEKQLK--------DRYGKDM 55

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           + E+I + +  ++ + S    +                +  +    F           + 
Sbjct: 56  LYEMIAQDVITKKYKVSDDDVEKEVQ-----------KVKNQYGDQFTAVLENNRLKDEA 104

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           E++                      +           
Sbjct: 105 DFKKQIKFKLAMNEAIKKSVTEKEVKA--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ ++            ++ +  +      G   Y     + P+F+    K   
Sbjct: 145 SDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYKLKV 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              +NP  +  G   I + DK++L     +K  +       +I       + ++K    A
Sbjct: 205 GQISNPVKSPNGYHIIKLTDKKELKPYDEVKDSIRKNLEEERIADPTFSHKLLQKELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|150397715|ref|YP_001328182.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sinorhizobium
           medicae WSM419]
 gi|150029230|gb|ABR61347.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sinorhizobium
           medicae WSM419]
          Length = 284

 Score = 87.8 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/290 (11%), Positives = 73/290 (25%), Gaps = 48/290 (16%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ---KINGELEKIAVQELIVETLKKQ 88
                  +  +   +  + I   ++   +  L  Q     + +    A+  +I   L  +
Sbjct: 19  GVARAEGTDPVIAKVGDQEIRQSELDLAVTSLDPQLQRMPDEQKRAAALSAVIDVKLLLK 78

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
           + EK G+                              +          +L  + +     
Sbjct: 79  DAEKEGL------------------------------QNDETFKQRIAFLTERELHNAYF 108

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
           K   +      E++   +K+        E   R +L    D        +          
Sbjct: 109 KKHVIDAVTPEEVKARYDKEIAAIPPQEEVKARHILVKTEDEAKAVIKELDA-------- 160

Query: 209 RLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKG 266
                      +  ++  +    G   Y  +  + P+F+       +   T  P  TQ G
Sbjct: 161 ---GKNFAELAKAKSTDPNKDEGGDLGYFTKGRMVPEFETAAFALEKGAYTKTPVKTQFG 217

Query: 267 VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
              I + DKR           +  Q     +     E +   + +  +  
Sbjct: 218 FHVILVEDKRPQAP--PTLEQVEPQVRQLVMRDRYLELLNSAKESTAVEI 265


>gi|71278179|ref|YP_270447.1| peptidyl-prolyl cis-trans isomerase D [Colwellia psychrerythraea
           34H]
 gi|71143919|gb|AAZ24392.1| peptidyl-prolyl cis-trans isomerase D [Colwellia psychrerythraea
           34H]
          Length = 638

 Score = 87.8 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/407 (7%), Positives = 87/407 (21%), Gaps = 101/407 (24%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +          +    +++ F +  + SY +         T+NGE I+    +K  
Sbjct: 1   MLEDIREKSQGLTAKIILGLIILTFAVAGVGSYTN--SVDTSVATVNGEPISQQAFNKAY 58

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                       +  +  LI E L  Q  E   I      +  
Sbjct: 59  QAQRGRMAQQFGEMFDTLSNDANYMANFRQGVLDNLINEKLIDQNSEALAIRVSDLRLKE 118

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN-------------- 150
              +          D + +L                        +               
Sbjct: 119 TIRKMPEFQVDGTFDNNRYLAIINQAGFFQSSDFRDYLRVEMTRRQLSQALIATEFNLPY 178

Query: 151 -----------------------DFMLKYGNLEMEIPANKQKMKNITVREYLIRT----- 182
                                   F       + E+ +     +     +  ++      
Sbjct: 179 QEKLQLALQNQTRDIRFATISAEQFKATVELTDEEVNSYYLANQARFQNKEQVKVDYISL 238

Query: 183 --------------VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF------ 222
                          +         +     +R               ++  K       
Sbjct: 239 NVANIAKGINVTDEEVAKYYQENSASFTESAQRRISHILIEFNDGNADDEAAKIQAQAVL 298

Query: 223 -----------------ASKIHDVSIGKAQYLLESDLHPQFQNL--LKKSQNNTTNPYVT 263
                                   + G  ++L    +   F        +  +T+    T
Sbjct: 299 ARLEQGEDFAVLAKEVSNDTFSGENGGDLEWLEPGVMEETFDEAALALVNVGDTSQLVKT 358

Query: 264 QKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKL 308
             G   + + D ++   +  I ++  L ++ +  + ++      +++
Sbjct: 359 SFGYHVLKLTDYKEEVVKALIDVQTELRSKLSNDQAQEKFFTLQQEM 405


>gi|255011717|ref|ZP_05283843.1| putative exported peptidyl-prolyl cis-trans isomerase [Bacteroides
           fragilis 3_1_12]
 gi|313149552|ref|ZP_07811745.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis 3_1_12]
 gi|313138319|gb|EFR55679.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis 3_1_12]
          Length = 456

 Score = 87.8 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/318 (11%), Positives = 97/318 (30%), Gaps = 17/318 (5%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKR--IALLKLQ 66
           +  F+       +  +  +  + SY    +   +   +  E I   D+ +    AL + +
Sbjct: 1   MKKFVN-FKFVVMFALALVANVASYAQDNVIDEVVWVVGDEAILKSDVEEARLAALYEGR 59

Query: 67  KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
           K +G+   +  +EL V+ L   +     I    + V         N   +         +
Sbjct: 60  KFDGDPYCVIPEELAVQKLYMHQAVLDSIEVPESEVIQRVDYQINNYIQALGSRERMEAE 119

Query: 127 QGIGDNHFKQYLAIQSIWP---DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                   ++ L   +        ++   +        E+    + +   ++     +  
Sbjct: 120 FNKTSTQIREALRENARDGAIVQRMQQKLVGDIKVTPAEVRRYFKDLPQDSIPYVPTQVE 179

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-----SKIHDVSIGKAQYLL 238
           +  I          ++   +   E   R+ K  +     A      +   +  G+  ++ 
Sbjct: 180 VQIITQQPKVPISEIEDVKRRLREYTDRINKGESDFSTLALLYSEDRGSAIKGGETGFMG 239

Query: 239 ESDLHPQFQNLLKKSQN--NTTNPYVTQKGVEYIAICDKRDLGGEIA---LKAYLSAQNT 293
           +  + P++ N+    Q+    +    ++ G   I + +KR          LK  +S +  
Sbjct: 240 KGQMVPEYANVAFNLQDTKKISKIVESEYGFHIIQLIEKRGDRINTRHILLKPKVSDKEL 299

Query: 294 PTKIEKHEAEYVKKLRSN 311
                         +RS+
Sbjct: 300 NE-ANARLDSIANDIRSD 316


>gi|212636023|ref|YP_002312548.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           piezotolerans WP3]
 gi|212557507|gb|ACJ29961.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           piezotolerans WP3]
          Length = 619

 Score = 87.8 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/400 (11%), Positives = 99/400 (24%), Gaps = 93/400 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+       I       V++ F    + SY   +       T+NGE I++  + +  
Sbjct: 1   MLEKIREGSQGVIAKSILVLVILSFAFTGVSSYLGSSTEVA-AATVNGEEISNSALEQAY 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     +++  ++ L+ E L  Q   + G+      +  
Sbjct: 60  ENERGRLEQQLGDMFSTLSADDNYMQSVKQSVLERLVAEKLLDQNAAELGLRVSDEQIRT 119

Query: 105 FFVQ---HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK------ 155
             +Q      +     + + + L + G   N F+  + +      +V      +      
Sbjct: 120 AIMQEPAFQTDGRFDNDRYQAILRQLGYQANSFRDMMRVDMTRRQLVATLVGSEFVLPGE 179

Query: 156 ---------------------------YGNLEMEIPANKQKMKNITVREYLIRTVLFS-- 186
                                          + +I           VR  ++        
Sbjct: 180 AEYLANIQGQTRDINYLVIDSTPFLAAASVTDEQIQTYYNSNLGQFVRPEIVSLNYIELD 239

Query: 187 -----------------IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI--- 226
                              D         +KR+       L       K E    K+   
Sbjct: 240 AKQLAADVTVTEADAKTYYDENKVQYLQPEKRLAAHILIGLDEDNAEEKAEAIYQKLQNG 299

Query: 227 ---------------HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYI 270
                               G+  +     + P+F   L    + + +N   T  G   I
Sbjct: 300 EDFAALAKAESQDTFSGEQGGQLDWFEAGVMEPEFDAALFALDKGSYSNVVKTNFGYHII 359

Query: 271 AICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
              D     G  A  A +  +      E+   +   +L+ 
Sbjct: 360 KALDI--QAGAEAPFADVKEKIIAQLQEQQAVDKFYELQQ 397


>gi|15604429|ref|NP_220947.1| protein export protein PRSA precursor (prsA) [Rickettsia prowazekii
           str. Madrid E]
 gi|20138858|sp|Q9ZCX6|PLP_RICPR RecName: Full=Parvulin-like PPIase; AltName: Full=29.5 kDa outer
           membrane antigen; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase plp; AltName: Full=Rotamase plp;
           Flags: Precursor
 gi|3861123|emb|CAA15023.1| PROTEIN EXPORT PROTEIN PRSA PRECURSOR (prsA) [Rickettsia
           prowazekii]
 gi|4581486|emb|CAA61657.1| parvulin, PPIase-like protein [Rickettsia prowazekii]
 gi|10303401|emb|CAC10161.1| parvulin-like PPIase [Rickettsia prowazekii]
 gi|292572198|gb|ADE30113.1| Parvulin-like peptidyl-prolylisomerase [Rickettsia prowazekii Rp22]
          Length = 282

 Score = 87.8 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 81/301 (26%), Gaps = 38/301 (12%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           + +IF  V ++S  ++    ++  T  G  + +  I +        +    ++       
Sbjct: 4   LSVIFLSVSMLSSIAFGDEDKVVATYKGGEVKESQIMQEFKPQLNLQSGETIKN------ 57

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
                                     ++   N  L  E+ +              +    
Sbjct: 58  --------------FDDFPLQDQEKLIKIYVNNLLLKEEVAKSSITSSKEFQEKLENAKN 103

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           Q    +++ N       +   +   NK         +  +  +L              QK
Sbjct: 104 QLAQQELLANYIKSNITDKMFDDEYNKYVDNLKGKEQIKVAHIL-----------VKSQK 152

Query: 201 RIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYL---LESDLHPQFQNLLKK-SQN 255
                +    +        E+F+  K    + G   Y+       L P+F+        N
Sbjct: 153 EANTVKTKLSKGGNFTKLAEEFSLDKATASNGGIIGYIILNQPGQLVPEFEQKAFALKVN 212

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             + P  T  G   I + +K+ +   I  K             +   +Y+  L + A + 
Sbjct: 213 EVSTPVKTSFGWHIIKVLEKKPVP--IPTKEEAKVTIDNILAAEILKQYISDLEAKADLK 270

Query: 316 Y 316
            
Sbjct: 271 I 271


>gi|34540238|ref|NP_904717.1| PPIC-type peptidyl-prolyl cis-trans isomerase [Porphyromonas
           gingivalis W83]
 gi|34396550|gb|AAQ65616.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Porphyromonas
           gingivalis W83]
          Length = 460

 Score = 87.8 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/305 (8%), Positives = 85/305 (27%), Gaps = 17/305 (5%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--GELE 73
           +    +++      + S     +   +   +  E I   DI      L        G  +
Sbjct: 6   MRICIIMLSLLYWALPSMGQKNVIDEVVWMVGDEPILRSDIEATKRFLLSSGRPLEGNAD 65

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
               +++ V+ L   + +   I  +   VN +   +  +            +        
Sbjct: 66  CYIPEQIAVQKLFLNQAKIDSIEVNEADVNRYVDMYLADYIQQFGSKEKMEEYFNRKYTQ 125

Query: 134 FKQYLAIQSIWP---DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF----S 186
            ++   ++        +++            EI      +   ++        +      
Sbjct: 126 IREEQRVEVRNSEIVRMMRKKIDENVKVTPSEIRQYFASLPQDSLPYIPTTVEVQLLAIK 185

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQ 245
              +  +     ++  + ++E              ++      +  G+  ++ ++ L  +
Sbjct: 186 PVISLHETDAIKKRLREFSDEINEGRRDFTTLARLYSEDSKTALQGGEYGFVSKASLDAE 245

Query: 246 FQNLLKKSQN--NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAE 303
           F  ++    +    +    T  G   + + +KR   G++     +     P   +    E
Sbjct: 246 FARVVFSLTDTKRVSPIIKTDDGYHIVQLIEKR---GDVINFRQIV--LKPKVSDAALTE 300

Query: 304 YVKKL 308
              KL
Sbjct: 301 TTNKL 305


>gi|209694402|ref|YP_002262330.1| peptidyl-prolyl cis-trans isomerase D [Aliivibrio salmonicida
           LFI1238]
 gi|208008353|emb|CAQ78508.1| peptidyl-prolyl cis-trans isomerase D [Aliivibrio salmonicida
           LFI1238]
          Length = 618

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/402 (8%), Positives = 91/402 (22%), Gaps = 90/402 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++    +  +  +    ++  F    + SY     S  +   +    IT  D  +  
Sbjct: 1   MMDRIREGSTGLVVKIILGLIIFSFVFAGVGSYL-VGGSQPLAAKVGEREITRNDFEQVY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELI-----------------VETLKK 87
              + +  +                 +  K  +  ++                  E +++
Sbjct: 60  QNERNRMQSQLGEYFSTLLGDPAYVEQFRKSVLDRMVNDALLDNQAQELGLRVSDEQIRQ 119

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD-------------------KQG 128
             +       D       F    R  G +++ F+ +L                       
Sbjct: 120 AILSMPQFQKDGKFDEEIFNVSLRRAGFTSDSFAEYLRGDLVRNQLVSALESTEFTLSNE 179

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT------ 182
           +      +    +     +    F       E E+       K   VR   ++       
Sbjct: 180 VKAQGELEGQQREIRTITLDTATFAKNAKVTEEEVKEYYDANKQQFVRPEQVKVSYIELS 239

Query: 183 -------------VLFSIPDNKLQNQGFVQKRIKDAEESRLR-------------LPKDC 216
                         + +  +         +KR       +                    
Sbjct: 240 GESLKAQAPITDEEIQTYYNENQDKYSTQEKREVSHILIKGDEADAQAVLARLDAGEDFA 299

Query: 217 NKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK--SQNNTTNPYVTQKGVEYIAIC 273
              ++ +         G   ++    + P+F++   +  +  + +    +  G   I + 
Sbjct: 300 TVAKEDSQDIPTAKEGGSLGWIERGVIDPEFEDAAFQLVNVGDHSGLVKSAFGYHIIQLD 359

Query: 274 DKRDLGGEIALK--AYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                  +   K  A + A                +L   A 
Sbjct: 360 AIEAPKTKPLAKVSADIKAFLVDEHAADAFYSMQTELAEKAF 401


>gi|53715356|ref|YP_101348.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis YCH46]
 gi|60683325|ref|YP_213469.1| putative exported peptidyl-prolyl cis-trans isomerase [Bacteroides
           fragilis NCTC 9343]
 gi|265767843|ref|ZP_06095375.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_16]
 gi|52218221|dbj|BAD50814.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis YCH46]
 gi|60494759|emb|CAH09565.1| putative exported peptidyl-prolyl cis-trans isomerase [Bacteroides
           fragilis NCTC 9343]
 gi|263252515|gb|EEZ24043.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_16]
 gi|301164814|emb|CBW24374.1| putative exported peptidyl-prolyl cis-trans isomerase [Bacteroides
           fragilis 638R]
          Length = 456

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/313 (10%), Positives = 97/313 (30%), Gaps = 17/313 (5%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKR--IALLKLQ 66
           +  F+       +  +  +  + SY    +   +   I  E I   D+ +    AL + +
Sbjct: 1   MKKFVN-FKFVVMFALALVANVASYAQDNVIDEVVWVIGDEAILKSDVEEARLAALYEGR 59

Query: 67  KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
           K +G+   +  +EL V+ L   +     I      V         N   +         +
Sbjct: 60  KFDGDPYCVIPEELAVQKLYMHQAVLDSIEVPEAEVIQRVDYQISNYIQALGSRERMEAE 119

Query: 127 QGIGDNHFKQYLAIQS---IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                   ++ +   +   +    ++   +        E+    +++   ++     +  
Sbjct: 120 FNKTSTQIREAMRENARDGLIVQRMQQKLVGDIKVTPAEVRRYFKELPQDSIPYVPTQVE 179

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-----SKIHDVSIGKAQYLL 238
           +  I          ++   +   E   R+ K  +     A      +   +  G+  ++ 
Sbjct: 180 VQIITQQPKIPVAEIEDVKRRLREYTDRINKGESDFSTLALLYSEDRGSAIKGGETGFMG 239

Query: 239 ESDLHPQFQNLLKKSQN--NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNT-PT 295
           +  + P++ N+    Q+    +    ++ G   I + +KR   G+     ++  +     
Sbjct: 240 KGQMVPEYANVAFNLQDTKKISKIVESEYGFHIIQLIEKR---GDRINTRHILLKPKVSD 296

Query: 296 KIEKHEAEYVKKL 308
           K        +  +
Sbjct: 297 KELDEANARLDSI 309


>gi|218781789|ref|YP_002433107.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763173|gb|ACL05639.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 624

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/260 (7%), Positives = 65/260 (25%), Gaps = 13/260 (5%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           +T  D     A   L              + +  +  +E  +            + +   
Sbjct: 139 VTSKDYEAEKARNMLSTKIRSY------LMAMAQVSDEEARQWYNWDAKQVSMKYVLFEP 192

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                                  ++     +  +      DF+ +    + EI       
Sbjct: 193 STFTDVVATEDQIQAYYDAHSADYETLPMAKVSYLYFNPKDFLKEVSIPQEEIELFYDDN 252

Query: 171 ---KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
                   + +    ++    D   +      K+ ++ E             ++F+    
Sbjct: 253 LDSYYEDQQVHARHILISLAKDAPEEKAAEALKKAQEIEAKAKAGEDFAELAKEFSDGPT 312

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEI--AL 284
             + G         +   F++     +    ++P  T  G   I + + ++   +    +
Sbjct: 313 AKNGGDLGSFPRGRMVKPFEDAAFALNAGEISDPVRTDFGFHIIKVEEIKEARTKELSEV 372

Query: 285 KAYLSAQNTPT-KIEKHEAE 303
           +  + ++      +++    
Sbjct: 373 EDSIRSKLAADVALDEAYNA 392


>gi|269103549|ref|ZP_06156246.1| peptidyl-prolyl cis-trans isomerase SurA [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163447|gb|EEZ41943.1| peptidyl-prolyl cis-trans isomerase SurA [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 357

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 87/237 (36%), Gaps = 7/237 (2%)

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
           +ETL+ Q+ ++ GI  D + +     Q A+   +S +     L + GI    F+  +   
Sbjct: 1   METLQVQQAKQMGIRIDDSQLEQAIGQIAKERNMSIDQLRQQLAQYGISFADFRDQIRRD 60

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
            +  +        +   L  E+    Q++   T +          I  ++  ++      
Sbjct: 61  LMASEARTAIVRRRINILPQEVENLAQQLGQQTQQNTEYNISQIQIRVDESASKAERDAA 120

Query: 202 IKDAEESRLRLPKDCNKLE---KFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS-QNNT 257
            ++A++    L    +  +    ++     +  G+  ++ + ++   F + +K + +   
Sbjct: 121 KEEADKLVKDLNDGADFAKLAYTYSKGPKALKGGEWGWMSKEEMPTIFADQIKNNGKGAI 180

Query: 258 TNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             P+ +  G   + I D +    +        ++  + +    +    + ++++R  
Sbjct: 181 IGPFRSGVGYHILKINDVKGLQTVSVMEVKARHILLKPSVILSDAGAKQELEQVRQK 237



 Score = 78.9 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 45/121 (37%), Gaps = 3/121 (2%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ- 254
             Q+  +  ++            +  +       + G+  +       P F++ ++    
Sbjct: 227 AKQELEQVRQKILSGKETFAQAAKAISQDPGSAANGGELGWQTPDLYVPAFKDKVETLPV 286

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           +  + P+ T  G   + +  +R++   + ALK          K  +    ++++LR++A 
Sbjct: 287 DTISQPFKTVHGWHIVEVEGRRNVDRTDAALKNRAYRILFNRKFNEEAQTWLQELRASAY 346

Query: 314 I 314
           I
Sbjct: 347 I 347


>gi|297568757|ref|YP_003690101.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924672|gb|ADH85482.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 305

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/312 (11%), Positives = 84/312 (26%), Gaps = 47/312 (15%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSS--RIRTTINGEVITDGDISKRIALLKLQKINGE 71
              T     I  C++   + ++ + S        ING  +T  ++   +          E
Sbjct: 4   AKKTAMMFAISMCMISGGAAQAGSASDPGDYVAKINGTTLTMEEVKTEM----------E 53

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           L   AVQ         Q+   +    DS        Q A                Q    
Sbjct: 54  LRPEAVQ------GFLQQHGGAAHFVDSLVTKEILYQEA----------LKHDLDQLPRL 97

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
               +     ++   +V+     K    +  +     +       +  ++          
Sbjct: 98  QELVRDFRKTTLASLLVEKKLSDKIELNDEVLQRYLHENAEEFTVKTAVQVSKIV----- 152

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS-KIHDVSIGKAQYLLESDLHPQFQNLL 250
                   ++ ++ +             ++F+  +    + G   ++    L     +  
Sbjct: 153 ----VETPEKAREVQARLAASDDFAVVAQQFSRHEESAANGGDLGFVGRQALPSDLAHHA 208

Query: 251 KK--SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT----KIEKHEAEY 304
                Q   + P V   G+ ++ + D R   G++     +    T        +    +Y
Sbjct: 209 FNVLRQGEISAPIVQSGGIYFLKVSDYR---GDLPEFDKIRQLLTQQVAPHLRQNAFEQY 265

Query: 305 VKKLRSNAIIHY 316
           + +L+    I  
Sbjct: 266 LAELKEEYQIEI 277


>gi|110346927|ref|YP_665745.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mesorhizobium sp.
           BNC1]
 gi|110283038|gb|ABG61098.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chelativorans sp.
           BNC1]
          Length = 290

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/305 (10%), Positives = 87/305 (28%), Gaps = 53/305 (17%)

Query: 19  YFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI---SKRIALLKLQKINGELEKI 75
             +  I  +  ++   + A  + +   ++G+ IT  D+    +  +    Q        +
Sbjct: 14  ILITTIVSLSLLLGSVAGAQDASVVGRVDGQDITADDLAIAEQMYSQQLGQMPEDARRSM 73

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            V  LI   +  +   K+ +              A                         
Sbjct: 74  LVDALIELRIVAEAARKANVADQEAYKRQLAFFEA------------------------- 108

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
                QS+    ++        +  ++   +++  K   V E  +R +L     + ++  
Sbjct: 109 -----QSLRSLFLEQRVAAAVTDEAVKAAYDERVGKIPPVLERRLRHILLRSESDAVEVI 163

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKS 253
             ++                    ++ ++     V  G   ++ E  + P+      K  
Sbjct: 164 EALK-----------GGKAFAELAQERSADEVSKVKGGDLGFVAEGQVVPEVDAAAAKLQ 212

Query: 254 QNNTTN-PYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
               T  P  +  G   + + +   R      A+   +      T+  +     + +LR+
Sbjct: 213 PGEFTQSPVASAFGFHVVLVEETRNRPPPAFEAVAPQIRQALEATEERRI----ISELRA 268

Query: 311 NAIIH 315
            A + 
Sbjct: 269 AAKVE 273


>gi|222110395|ref|YP_002552659.1| ppic-type peptidyl-prolyl cis-trans isomerase [Acidovorax ebreus
           TPSY]
 gi|221729839|gb|ACM32659.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax ebreus
           TPSY]
          Length = 640

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/405 (7%), Positives = 95/405 (23%), Gaps = 102/405 (25%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK-- 58
           M   +       I +   + ++I   I+  +    ++  S +   ++G+ IT  D     
Sbjct: 1   MFESIRKHSK--IVMFLLFLLIIPSFILVGIDSNYFSGGSPVVARVDGKDITQADWDNAH 58

Query: 59  RIALLKLQKI----------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
           R+   +++            + +     ++ L+ + + +   +   +      +      
Sbjct: 59  RMESDRIRAQSPGIDAKLLDSPQARYATLERLVRDRVLQVAAQDMHMLTSDARLARELQS 118

Query: 109 HAR-------NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
             +       +  L AE + +    QG+     +  +        V+             
Sbjct: 119 IPQIAALKRADGTLDAEAYRALAGAQGLTPEGLEARIRQDLSVNQVMGGVMGSAFSGPAE 178

Query: 152 -----------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRTV----- 183
                                  F+ K    + ++ A          +            
Sbjct: 179 ARLALDALFQRREIQIARFNASAFVSKVVVTDADLEAYYTAHPAKFQQAEQASVEYVVLD 238

Query: 184 -----------------LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
                             +    N+L  +   +        S+        + +  A ++
Sbjct: 239 LDAVKAGITLSEDDLRTYYKENLNRLAGKEERRASHILINASKDAPADARTQAKAKAEEL 298

Query: 227 HDV-----------------------SIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYV 262
                                     S G   +     +   F++ +    +   ++   
Sbjct: 299 LAQVRKAPGSFAEIAKKESQDPGSAPSGGDLGFFGRGAMVKPFEDAVFSMKKGEISDVVE 358

Query: 263 TQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
           T  G   I + D +           L         ++       +
Sbjct: 359 TDFGFHIILLSDIK--TPRQPSFEELRPSLEAELKQQQAQRKFAE 401


>gi|296445269|ref|ZP_06887228.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus
           trichosporium OB3b]
 gi|296257224|gb|EFH04292.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus
           trichosporium OB3b]
          Length = 335

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/278 (10%), Positives = 74/278 (26%), Gaps = 27/278 (9%)

Query: 37  AMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGIT 96
             S  +   +    IT   +   +  L  ++     ++  +                   
Sbjct: 63  KTSDDVVAHVGATDITTSQLRAYVEALGAREQAAIAKEPGL------------------- 103

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
                ++           +  E  +   D+Q       +Q      +   +         
Sbjct: 104 -----LSQAVRAMLNERVVLQEALAKKWDQQPKVAAQLEQLRERALVESYLQSVSVPPAD 158

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
              E E+       ++  V     +     +   K  ++    K  K  E+ + +L    
Sbjct: 159 YPSEEELQKAYDANRSSFVVPRQFQLGHIFVQSPKDADRATEDKAKKTLEDIQRKLKSGA 218

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAICDK 275
           +      ++      G+  +L E  + P+ +  +    +   + P     G  ++ + D 
Sbjct: 219 DFAAVAKAQSEAKDGGELGWLAEGQIRPEIRTRVMGLVKGAVSEPIQLDDGWHFVKLIDT 278

Query: 276 R--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           +          +  L+ Q    +       YV +L   
Sbjct: 279 KASTTRPLAEAREQLAQQMRVERAGLLRRAYVAELVKR 316


>gi|291616553|ref|YP_003519295.1| PpiD [Pantoea ananatis LMG 20103]
 gi|291151583|gb|ADD76167.1| PpiD [Pantoea ananatis LMG 20103]
          Length = 646

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/396 (9%), Positives = 99/396 (25%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + +  +  +    +++ F +  + +Y     +      +NG+ I+   + +  
Sbjct: 24  MMDNLRAASNHVVLKIILGLIILSFVLTGVGNYLIGGNNDY-AAKVNGQEISRAQLDQAF 82

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + ++                   ++ + A+ +LI + L    I+   I    + V  
Sbjct: 83  NSERNRQQQMLGDQFSQLAGNDGYMQQMRQQALSQLIDQALLDSYIKDLHIAISDDQVKQ 142

Query: 105 FFVQHAR---NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
                A    N       +++ +   G   + + + L  Q     ++             
Sbjct: 143 AIFNQAAFQTNGKFDNAKYNAMIGNMGFTADQYAEALRKQLATQQLINAIANTDFMLKNE 202

Query: 152 -----------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                     K    + EI    Q+ KN  +     R     + 
Sbjct: 203 TSKLVDLVAQKRDIQTATLDVNALAAKQTVNDDEINQYYQQHKNSFMAPEQFRVSYIKLD 262

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                                         
Sbjct: 263 AAGMQENASDADIQAWYDQHKADYTQPQRDRYSVIQTKTEADANAILAQLKSGADFAELA 322

Query: 220 EKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK--R 276
           +  +         G   +L  S    + +N   K +   +    +  G     + D    
Sbjct: 323 KTKSIDPISARKGGDMGWLEPSTTPDELKNAGLKEKGQLSGVIKSSVGFLIARLDDIIPE 382

Query: 277 DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
            +     +++ ++ +    K      +  +K+   A
Sbjct: 383 QVKPLADVRSEVADEVKQEKAVDAFYKLQQKVSEAA 418


>gi|242240288|ref|YP_002988469.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Dickeya dadantii
           Ech703]
 gi|242132345|gb|ACS86647.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya dadantii
           Ech703]
          Length = 626

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/398 (8%), Positives = 104/398 (26%), Gaps = 87/398 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + ++ +  +    ++  F +  +  Y            +NG+ I+   + + +
Sbjct: 1   MMDNLRAAANNVVLKVILALIVGSFVLTGVGDYLIRGSGDY-AAKVNGQEISRAQLEQAV 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + ++                   +L K A+ +LI +TL  Q     G+      V  
Sbjct: 60  QNERNRQQEMLGENFSALAANEGYMQQLRKQALSQLIDDTLIDQFARNLGLNISDEQVKQ 119

Query: 105 FFVQ---HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY----- 156
                     N     E + + + + G+  + + Q L  Q +   +V+      +     
Sbjct: 120 AIFSVPAFQTNNRFDNEKYLAQVQQLGLTPDVYAQLLRKQLVTQQLVRGLGGSNFQLPQE 179

Query: 157 ----------------------------GNLEMEIPANKQKMKNITVREYLIRTVLFS-- 186
                                          + EI     +  +  +     +       
Sbjct: 180 IDNLVAIAAQDRTIRTATIDLDARAKTQTASDDEIQNFYNQNSSRYLAPEQFKVSYIMLD 239

Query: 187 -----------------IPDNKLQNQGFVQKRIKDAEESR------------LRLPKDCN 217
                              +         ++R     + +             +      
Sbjct: 240 AAAIMDKISVDSAAVSSYYEQHKSEFTQPERRKYSIIQLKNEADAKAVLEQLHKGADFAA 299

Query: 218 KLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK- 275
             ++ ++ I    + G   ++  +    + +    + +   ++   +  G   + + D  
Sbjct: 300 LAKEKSTDIVSRRNGGDLGWMDGNSTVDEIKQANLQQKGQLSDVVKSSVGYLIVRLDDIQ 359

Query: 276 -RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
            + +     ++  L  +    K         +KL   A
Sbjct: 360 VQRVRSLDEVRGDLGDKVKREKALDEFYAQQQKLSEAA 397


>gi|167624682|ref|YP_001674976.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           halifaxensis HAW-EB4]
 gi|167354704|gb|ABZ77317.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           halifaxensis HAW-EB4]
          Length = 621

 Score = 87.4 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/402 (10%), Positives = 96/402 (23%), Gaps = 95/402 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+       I       V++ F    + SY   +       T+NGE I++  + +  
Sbjct: 1   MLEKIREGSQGVIAKSILVLVILSFAFTGVSSYLGSSTEVA-AATVNGEEISNSALEQAY 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELI-----------------VETLKK 87
              + +                     +++  ++ L+                  E +K 
Sbjct: 60  QNERSRLEQQLGDMFATLSADDNYMQSVKQSVLERLVAETLLDQNAAELGLRVSDEQIKA 119

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN--------------- 132
             + +     D    N  +    R  G  A  F   +                       
Sbjct: 120 AIMTEPAFQTDGRFDNDRYQAILRQLGYQANSFRDMMRTDMTRRQLVATLVGSEFVLPGE 179

Query: 133 ----HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS-- 186
                  Q       +  +    F+      + +I        +  +R  ++        
Sbjct: 180 AKYLADLQGQTRDIDYKVIDATPFLADISVTDEQIKTYYDSNLDQFIRPEVVSLDYIELD 239

Query: 187 -----------------IPDNKLQNQGFVQKRIKDAE-------------------ESRL 210
                              D    N    +KR+                       +   
Sbjct: 240 AKDLAKDVKVTDADAQAYYDEHKANYTQAEKRLAAHILVQAGDDDAAAKAKAEAIYKQLQ 299

Query: 211 RLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVE 268
                    +  +         G+  +     + P+F   L   ++ + +N   T  G  
Sbjct: 300 DGADFAELAKTESEDTFSGEQGGQLDWFEAGVMEPEFDTALFALNKGDYSNVVKTNFGYH 359

Query: 269 YIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
            I + D +   G  A  A +  +      EK   +   +L+ 
Sbjct: 360 IIKLLDIQ--AGAEAPFADVKEKIIAQLQEKQAVDKFYELQQ 399


>gi|49480029|ref|YP_035403.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49331585|gb|AAT62231.1| peptidyl-prolyl cis-trans isomerase (protein export protein)
           [Bacillus thuringiensis serovar konkukian str. 97-27]
          Length = 285

 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/304 (11%), Positives = 80/304 (26%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + +++      SS    T     IT  D  K++             K  
Sbjct: 4   KHIFIITALISILMLAACGQKNSSATVATATDSTITKSDFEKQLK--------DRYGKDM 55

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           + E+I + +  ++ + S    D                   +  +   +     +  FK 
Sbjct: 56  LYEMIAQDVITKKYKVSDDDVDKEVQ-------KAKNQYGDQFKNVLKNNGLKDEADFKN 108

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
            +  +      +K     K                             +           
Sbjct: 109 QIKFKLSMNKAIKQSVTEKDVKD------------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ ++            ++ +  +      G   Y     + P+F+    K   
Sbjct: 145 SDENEAKEIKKKLEAGASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYKLKI 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              +NP  +  G   I + DK++L     +K  +       +I       + ++K    A
Sbjct: 205 GQISNPVKSPNGYHIIKLTDKKELKPYDEVKDSIRKNLEEERIADPTFSHKLLQKELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|313207040|ref|YP_004046217.1| ppic-type peptidyl-prolyl cis-trans isomerase [Riemerella
           anatipestifer DSM 15868]
 gi|312446356|gb|ADQ82711.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Riemerella
           anatipestifer DSM 15868]
 gi|315022566|gb|EFT35593.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Riemerella
           anatipestifer RA-YM]
 gi|325335523|gb|ADZ11797.1| peptidylprolyl isomerase [Riemerella anatipestifer RA-GD]
          Length = 455

 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/305 (7%), Positives = 84/305 (27%), Gaps = 11/305 (3%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
               F + +         K   +   I   +  E++ + DI ++    + Q         
Sbjct: 9   FLLSFFITLLSFNAHAQLKPGDLVDGIAAVVGNEIVLESDIEQQENYARQQGAQTANRCE 68

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYF-----FVQHARNTGLSAEDFSSFLDKQGIG 130
            +++++   L   E +K  +  + +          + +         E  +++  +    
Sbjct: 69  FLEKVLSNKLLIYEAKKDTLIENHSEAIKQQAEAKYNELLAQFPSEKELLAAYKFRNSFE 128

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV--REYLIRTVLFSIP 188
                + +     +                 E+       K      ++ +    +   P
Sbjct: 129 MKSAIEQIDTDQYYGQAKYQRITSGVNITPNEVTDFYNIYKGQLPMVKDEISLAKITLYP 188

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQ 247
               ++Q  +  ++   ++              ++       + G  + + +  +   F+
Sbjct: 189 KLTKEHQQKLIDKLNQIKKDIEGGESFEKMARIYSEDPGSAATGGLYKNIAKGAMVKAFE 248

Query: 248 NLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
                  +   + P  ++ G   I +   +  G     +  L      T+      + + 
Sbjct: 249 AAALNLQEGELSKPIESEFGYHLIQL--IKKSGKFYDARHILLKAEPNTEEIAAAKKELN 306

Query: 307 KLRSN 311
           ++R  
Sbjct: 307 EIRKQ 311


>gi|289422639|ref|ZP_06424480.1| foldase protein PrsA [Peptostreptococcus anaerobius 653-L]
 gi|289156939|gb|EFD05563.1| foldase protein PrsA [Peptostreptococcus anaerobius 653-L]
          Length = 349

 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/312 (11%), Positives = 90/312 (28%), Gaps = 23/312 (7%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK--------------LQK 67
           L    +  +++  + A S+    T+NG+ I+  +I  ++   K              ++ 
Sbjct: 4   LASILLAAVIAVSTAACSNNEVATVNGKSISSKEIENQLKFQKWMMESQYGEEVWTQMEA 63

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
            +   ++   +++     + +                   +         ED       +
Sbjct: 64  QDKNYQETMKKQVATSVSRIRAFTDYAEKNGVKPDQKQLKEFQAQNKKMLEDEKMKKSFE 123

Query: 128 GIGDNHFK-QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
             G +       A +      +      K    E E+    +K        +++ T   +
Sbjct: 124 KTGLDEKFLDDFAKEKATMVSLSEYLKKKSKPTEKELKDYYEKNSVKAKAAHILLTTTDT 183

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKI-HDVSIGKAQYLLESDLHP 244
                   +    K+  D      +         +K +       + G+     +  + P
Sbjct: 184 NGKPLSPEKKAEVKKKADKIYEEAKSGVDFKELAKKNSQDPGSAQNGGELGEFGKGQMVP 243

Query: 245 QFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAE 303
           +F+       +   + P  TQ G   I + +K        +KA + A  +  K +K    
Sbjct: 244 EFEKAVFSMKEGEISKPIETQYGYHIIKL-EKITKSEFDKVKAEMEAALSQEKAQKLAQS 302

Query: 304 YVKKLRSNAIIH 315
            +      A I 
Sbjct: 303 II----DAAKIQ 310


>gi|290474659|ref|YP_003467539.1| peptidyl-prolyl cis-trans isomerase, for periplasmic folding of
           outer membrane proteins [Xenorhabdus bovienii SS-2004]
 gi|289173972|emb|CBJ80759.1| peptidyl-prolyl cis-trans isomerase, for periplasmic folding of
           outer membrane proteins [Xenorhabdus bovienii SS-2004]
          Length = 623

 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/398 (9%), Positives = 99/398 (24%), Gaps = 87/398 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y S    +     +NG+ I+   + +  
Sbjct: 1   MMDNLRTAANGPVLKIVLALIILTFVLTGVTGYLSSEGGNY-AAKVNGQTISRAQLEQAF 59

Query: 61  A----------------LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
                            LL  ++   ++ + ++  LI   L  Q   K G++     V  
Sbjct: 60  QQDKIALQDRLGDQFSTLLSDEQKVQQIRRSSLDRLITVILSDQYARKLGLSASDEQVKE 119

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                     +       + + L       ++F + +    I   ++             
Sbjct: 120 EIRNLPFFQTDGKFDNNKYLTLLTGANRSPDNFAEQVRQDLINRQLMSILTGSEIALPTE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV----- 183
                                     +    + E+        N       ++       
Sbjct: 180 IKQETALAFQERTVRFATLELKSIEAQQKVTDKELKNYYDVNSNSFTVPEKVKVSYIKMD 239

Query: 184 --------------LFSIPDNKLQNQGFVQKRIKDA-------------EESRLRLPKDC 216
                         +     N L     V+++                 +E +       
Sbjct: 240 AADELKSVTVSDADIEKYYKNNLPQYMQVEQKKYSMVQLVSDAEAKSVLDELKKGADFSK 299

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
              EK   K      G   ++ ES L  + ++     +   +       G     + D +
Sbjct: 300 LAAEKSTDKFSAQKGGDLGWMEESSLPDEIKSAKLIEKGQLSGVIKLSGGYAIFRLDDIK 359

Query: 277 DLGGEI--ALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
               +    +++ +       K         +K+   A
Sbjct: 360 PQIIKSLVEVRSEIEKIVKQEKAVDAFYALQRKVSDAA 397


>gi|319957104|ref|YP_004168367.1| ppic-type peptidyl-prolyl cis-trans isomerase [Nitratifractor
           salsuginis DSM 16511]
 gi|319419508|gb|ADV46618.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitratifractor
           salsuginis DSM 16511]
          Length = 287

 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 44/302 (14%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI------NGELEKIA 76
           ++   +      +   +S +   +NG  IT  +++  +      +       + + +K  
Sbjct: 5   LLATALSFSMGATLLSASDVIAVVNGHKITKAEVNTFLRQSMPNQPITYDMLDPKTKKKV 64

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           +  LI   +  +  +K+G+  +                                      
Sbjct: 65  LDGLIETEILAEAAQKAGVEKNPEF-------------------------------QQML 93

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
            +A + +  +    D   K    E E     QK ++   R   +      +   K   + 
Sbjct: 94  DMAKKKLMINAWAKDEFKKIIVSESEAKEFYQKHQDKFTRPAQVHARHILVKSEKKAQEI 153

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH-PQFQNLLKKSQN 255
             Q +    E  + R        +K ++       G   Y  +  +  P  +     ++ 
Sbjct: 154 IDQLKGLKGEALQKRF---IELAKKESTGPTGPKGGDLGYFGKDQMVLPFSKAAFALNKG 210

Query: 256 NTT-NPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             T  P  TQ G   I + DK+        A+K  + A     +  +   +  + L+  A
Sbjct: 211 EITTKPVKTQFGWHVIYVEDKKPAQTIPFDAVKDRVIAALKQQRFAEKMKKETELLKKKA 270

Query: 313 II 314
            I
Sbjct: 271 SI 272


>gi|163745064|ref|ZP_02152424.1| PPIC-type PPIASE domain protein [Oceanibulbus indolifex HEL-45]
 gi|161381882|gb|EDQ06291.1| PPIC-type PPIASE domain protein [Oceanibulbus indolifex HEL-45]
          Length = 282

 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/279 (10%), Positives = 72/279 (25%), Gaps = 50/279 (17%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKIN---GELEKIAVQELIVETLKKQEIEKSGIT 96
             +  T+N   IT G +    A L  Q        L +  + +L+ +T            
Sbjct: 30  DTVVATVNDTEITLGHMLVARATLPQQYQQLPDDVLFQGILDQLVQQTALA--------- 80

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
                                    SF  +         +         + ++       
Sbjct: 81  ------------------------DSFTGELPPRVTLSIENETRSLTAGEAIEGVMAEDV 116

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
            + E++   + Q       +E+    +L    +     +  ++                 
Sbjct: 117 SDEELQAAYDAQYKDAEPEQEFNASHILVETKEEADAIKAELE-----------GGADFA 165

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDK 275
              ++ ++       G   +     + P+F+  +        + P  TQ G   I + + 
Sbjct: 166 EVAKEKSTGPSGPGGGSLGWFGPGMMVPEFEEAVAGMEAGGVSEPVETQFGWHVIKLNET 225

Query: 276 RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           R   GE      +  +      +      ++ L   A +
Sbjct: 226 R--TGEAPALEDVREELETQVRQTKVQTAIESLTEAAKV 262


>gi|121594957|ref|YP_986853.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42]
 gi|120607037|gb|ABM42777.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42]
          Length = 640

 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/405 (7%), Positives = 95/405 (23%), Gaps = 102/405 (25%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK-- 58
           M   +       I +   + ++I   I+  +    ++  S +   ++G+ IT  D     
Sbjct: 1   MFESIRKHSK--IVMFLLFLLIIPSFILVGIDSNYFSGGSPVVARVDGKDITQADWDNAH 58

Query: 59  RIALLKLQKI----------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
           R+   +++            + +     ++ L+ + + +   +   +      +      
Sbjct: 59  RMESDRIRAQSPGIDAKLLDSPQARYATLERLVRDRVLQVAAQDMHMLTSDARLARELQS 118

Query: 109 HAR-------NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
             +       +  L AE + +    QG+     +  +        V+             
Sbjct: 119 IPQIAALKRADGTLDAEAYRALAGAQGLTPEGLEARIRQDLSVNQVMGGVMGSAFSGPAE 178

Query: 152 -----------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRTV----- 183
                                  F+ K    + ++ A          +            
Sbjct: 179 ARLALDALFQRREIQIARFNASAFVSKVVVTDADLEAYYTAHPAKFQQAEQASVEYVVLD 238

Query: 184 -----------------LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
                             +    N+L  +   +        S+        + +  A ++
Sbjct: 239 LDAVKAGITLSEDDLRTYYKENLNRLAGKEERRASHILINASKDAPADARTQAKAKAEEL 298

Query: 227 HDV-----------------------SIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYV 262
                                     S G   +     +   F++ +    +   ++   
Sbjct: 299 LAQVRKAPGSFAEIAKKESQDPGSAPSGGDLGFFGRGAMVKPFEDAVFSMKKGEISDVVE 358

Query: 263 TQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
           T  G   I + D +           L         ++       +
Sbjct: 359 TDFGFHIILLSDIK--TPRQPSFEELRPSLEAELKQQQAQRKFAE 401


>gi|328552623|gb|AEB23115.1| molecular chaperone lipoprotein [Bacillus amyloliquefaciens TA208]
 gi|328911027|gb|AEB62623.1| molecular chaperone lipoprotein [Bacillus amyloliquefaciens LL3]
          Length = 285

 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/303 (9%), Positives = 84/303 (27%), Gaps = 42/303 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +  I     +      +  + +    +   +T G++   +               
Sbjct: 1   MKKIAIAAITATSVLALSACSSGDNDVIAKTDAGNVTKGELYTNMK--------KTAGAS 52

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            + +L+ E +  ++ + S    D                L             +   + +
Sbjct: 53  VLTQLVQEKVLAKKYKVSDKEID--------------NKLKEYKTQLGDQYSALKQQYGE 98

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
            YL  Q  +  + +          + +       +K      +++               
Sbjct: 99  DYLKDQVKYELLAQKAAKDNIKVTDSDTKEYYDGLKGKIRASHIL--------------- 143

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQ 254
              +K   + E+   +  K     +++++     + G   +  +  +   F +       
Sbjct: 144 VADKKTADEVEKKLKKGEKFETLAKEYSTDSSKDNGGDLGWFDKKSMDETFSKAAFGLKV 203

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              ++P  T+ G   I   ++R  G    +K  L  +    K+         ++K+   A
Sbjct: 204 GQVSDPVKTKFGYHIIKKTEER--GKYDDMKKELKEEVLKQKLNDNSAVQAAIQKVMKKA 261

Query: 313 IIH 315
            + 
Sbjct: 262 DVK 264


>gi|295401098|ref|ZP_06811072.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112126|ref|YP_003990442.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp.
           Y4.1MC1]
 gi|294976891|gb|EFG52495.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217227|gb|ADP75831.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacillus sp.
           Y4.1MC1]
          Length = 278

 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 94/301 (31%), Gaps = 41/301 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +  + +      V  +S  S   S  I  T +G+ IT  +    +           + K 
Sbjct: 1   MKKWMIAAAVASVFALSACSNGDSEVIVKTKDGD-ITKEEFYNEMK--------ARVGKE 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +++L+ E +  ++ + +    D    N   +   +   +  ++                
Sbjct: 52  VIRDLVHEKVLSKKYKVTDKEIDKEIENLKDMYGVQYDLVVQQNGEKA------------ 99

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +        + +   M      + E+    +  K      +++               
Sbjct: 100 --IRDMVKLDLLRQKAAMEDIKVTDKELKDYYENYKPKIRASHIL--------------- 142

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              +K  K+ +    +        ++++       + G   +  +  +  +F++   K  
Sbjct: 143 VKDEKTAKEIKAKLDKGEDFAKLAKQYSQDPGSASNGGDLGWFGQGKMVKEFEDAAYKLK 202

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE-KHEAEYVKKLRSNA 312
               ++P  T+ G   I + DK +      +K  +  +   +K++       V+KL  +A
Sbjct: 203 VGEISDPVKTEYGYHIIKVTDKEEKKPFNEMKEEIEFEVKRSKLDPAKMQAKVEKLVKDA 262

Query: 313 I 313
            
Sbjct: 263 K 263


>gi|153004233|ref|YP_001378558.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027806|gb|ABS25574.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 523

 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/372 (9%), Positives = 95/372 (25%), Gaps = 69/372 (18%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-----TINGEVITDGD 55
           M   +  +    I  +    ++++F I       +               +NG+ I   +
Sbjct: 1   MLEGLRANKGGIITWIFLGAIILVFVISFGPGSLNQGGGCAGAGASYAAKVNGKTIPAVE 60

Query: 56  ISKRIALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             ++ + L     +               L + A+ +L+   L  QE ++ GI      +
Sbjct: 61  WERQYSQLYDLYQSQMGGGFTRELAAQLGLAEQALSQLVDRELVIQEAKERGIVVSDEEL 120

Query: 103 NYFFVQHARNTG---LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-------- 151
           +                 E + +   +       F+ +   Q ++  ++           
Sbjct: 121 SSAIHAIPAFHRSGAFHFETYEAAARQNFGSPAKFESWYREQLLYGKMLAAVGETVKVSG 180

Query: 152 -------------------------FMLKYGNLEME-----------IPANKQKMKNITV 175
                                    F  +    + E           I    +       
Sbjct: 181 AEVKEAWQADADKLSLSFVRFPLAAFQAEVKPSDAEVKAFAEKDGARIEQFHKDNAARFD 240

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKA 234
           ++  +R            +    +K+I++A     +       +   +         G  
Sbjct: 241 QQKKVRVRHVLARVTPGADDAAARKKIEEAAARVKQGEAFEKVVAALSDDEGTKARGGDL 300

Query: 235 QYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNT 293
            ++ E     QF +  L   Q   + P  +  G   +   +   +  +    A       
Sbjct: 301 GFVTEGLFDEQFAKAALALEQGQVSAPVRSASGWHLVKAEEV--VPAKKVSLADARLDIA 358

Query: 294 PTKIEKHEAEYV 305
              +++  A  +
Sbjct: 359 RELLQQDRARKL 370



 Score = 42.4 bits (97), Expect = 0.089,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 269 YIAICDKRDLGGEIA---LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            +A+   R+   E A    +  ++ +    K  +  + +++ LR +A I 
Sbjct: 461 VVAVVTARETPDEKAFEGARDQVAERLRNEKEAQVVSRWLEGLRKDAEIE 510


>gi|111114930|ref|YP_709548.1| basic membrane protein [Borrelia afzelii PKo]
 gi|216263862|ref|ZP_03435856.1| basic membrane protein [Borrelia afzelii ACA-1]
 gi|110890204|gb|ABH01372.1| basic membrane protein [Borrelia afzelii PKo]
 gi|215979906|gb|EEC20728.1| basic membrane protein [Borrelia afzelii ACA-1]
          Length = 336

 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 102/334 (30%), Gaps = 37/334 (11%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTIN---GEVITDGDISKRIALLKLQKING-- 70
           + ++  L+I   V I S+      +     IN    E+IT      ++ + K  +     
Sbjct: 1   MKSFLFLVILGTVGINSFAQ----NTPVAIINLYKNEIITKTSFDSKVDIFKKTQGRDLT 56

Query: 71  -ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
              +K  +Q LI + L  QE  K GI    + V             + E     ++KQG 
Sbjct: 57  AAEKKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRTQFGLVNFTDEQIKQMIEKQGT 116

Query: 130 GDNHFKQYLAIQSIWPDVV----KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
                   +        +V    +  F       E EI    +  K   V   + R    
Sbjct: 117 NWGELLSSMKRSLSSQKLVLKQAQPRFSEVKTPSEKEIIEYYEANKTRFVNPDISRVSHV 176

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDL-- 242
                  +    + +      + R +       + K+++        G   +L   D   
Sbjct: 177 FFSTKDKKRSDVLDQAKNILSQIRSKKITFEEAVRKYSNDESSKAKNGDLGFLSRDDQNA 236

Query: 243 -----HPQFQNLLKKSQNNTTNPYVTQKGVEYIAI-----------CDKRDLGGEIALKA 286
                    + +   ++ + ++P  +++G   + +            DK     ++ +K 
Sbjct: 237 QNLLGPDFIKEVFNFNKGDISSPIASKEGFHIVKVTEKYAQRFLGLNDKVSPATDLIVKD 296

Query: 287 YLSAQNTP----TKIEKHEAEYVKKLRSNAIIHY 316
            +            + + + +   KL  +A I  
Sbjct: 297 AIRNNMVNIQQQQIVVQVQQDVYGKLNKSASIQI 330


>gi|238751010|ref|ZP_04612506.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia rohdei ATCC 43380]
 gi|238710700|gb|EEQ02922.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia rohdei ATCC 43380]
          Length = 628

 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/399 (9%), Positives = 107/399 (26%), Gaps = 87/399 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + ++ +  +    +++ F +  + SY     +      +NG+ I+   + + +
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSNDF-AAKVNGQEISRAQLEQAV 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                    ++ +  + +L+   L  Q  +K G+T     V  
Sbjct: 60  QSERSRMQQQLGEQFSALAANEGYMQQMRQQVLGQLVNNMLLDQYAKKLGLTASDAQVKD 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ----------------------- 141
              Q          D S +L           Q+  +Q                       
Sbjct: 120 AIRQAPYFQTEGKFDNSKYLALVNQMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPAE 179

Query: 142 -------SIWPDVVK------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                   +    V+           +    + E+ A   + KN  +    ++    ++ 
Sbjct: 180 AQAMSELILQQRDVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISFIAMD 239

Query: 189 DNKLQNQG-------------------------------FVQKRIKDAEESRLRLPKDCN 217
              +Q++                                  +   K A +   +      
Sbjct: 240 AAAMQDKITVTEEDITAYYDLHKSSYTQPEQRNYSVIQFKTEADAKAALDELKKGADFAT 299

Query: 218 KLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
             ++ ++  I   + G+  +L       + +      +   ++   +  G   + + D +
Sbjct: 300 IAKEKSTDIISRKNGGELGWLEPDTTADELKQANLSDKGQLSDVVKSSVGYLIVRLNDIK 359

Query: 277 DLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
               +    +   L+ Q    K         +K+   A 
Sbjct: 360 PEQVKPLSEVHDALAKQVKQEKAVDAYYALQQKVSEAAT 398


>gi|259909248|ref|YP_002649604.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Erwinia
           pyrifoliae Ep1/96]
 gi|224964870|emb|CAX56392.1| Peptidyl-prolyl cis-trans isomerase D [Erwinia pyrifoliae Ep1/96]
          Length = 622

 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/395 (7%), Positives = 104/395 (26%), Gaps = 85/395 (21%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
              +  + +  +  +    +++ F +  +  Y +          +NG+ I    + +  +
Sbjct: 1   MDNLRAASNHVVLKVILGLIILSFILTGVGGYLTGGSGDY-AAKVNGQEIGRAQLERAFS 59

Query: 62  LLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
             + ++                   ++ + A+ +LI E L  Q  ++ G+    + +   
Sbjct: 60  SERARQQQMLGEQFSVLAGNEGYMQQMRQQALSQLIDEMLLTQYAKEIGLAIGDDQIKQA 119

Query: 106 FVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV-------------- 148
                            + S ++  G   + + + L  Q     ++              
Sbjct: 120 IFTQPAFQTDGKFDNAKYLSIINNMGFTADQYAEALRKQLTTQQLIGSVTGTDFVLGNET 179

Query: 149 --------KNDFMLKY-----------GNLEMEIPANKQKMKNITVREYLIRTV------ 183
                   +   + +               + EI    Q+ ++  +     R        
Sbjct: 180 DSLAALVAQQRLVREVTINVNALAAKQNVTQEEIANYYQQHQSSLMSPEQFRVSYIKMDA 239

Query: 184 -----------LFSIPDNKLQNQGF------------VQKRIKDAEESRLRLPKDCNKLE 220
                      + S       +                +   +   ++  +        +
Sbjct: 240 SAMLQPVSESDIQSWYQQHQDDYTQPQRNRYSIIQTKTEAEARSVLDALNKGGSFAKLAK 299

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
           + ++      + G   +L       + +N   K +   ++   +  G     + D +   
Sbjct: 300 EKSADPISARNGGDMGWLEPETTPDELKNAALKEKGQLSDVITSSVGFIVARLDDTQPEK 359

Query: 280 GE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
            +    +   ++ +    K      +  +K+   A
Sbjct: 360 VKALSEVHDEIARKLKQEKAVVAFYKLQQKVSDAA 394


>gi|170763930|ref|ZP_02635346.2| putative foldase protein PrsA [Clostridium perfringens B str. ATCC
           3626]
 gi|170764086|ref|ZP_02631748.2| putative foldase protein PrsA [Clostridium perfringens E str.
           JGS1987]
 gi|170662690|gb|EDT15373.1| putative foldase protein PrsA [Clostridium perfringens E str.
           JGS1987]
 gi|170712067|gb|EDT24249.1| putative foldase protein PrsA [Clostridium perfringens B str. ATCC
           3626]
          Length = 326

 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/314 (12%), Positives = 86/314 (27%), Gaps = 20/314 (6%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING------------ 70
                  +V     A+      T+NGE IT G++   +  +  Q  +             
Sbjct: 2   FSAVGCNMVEKTQAAIDKTTVATVNGEKITLGEVDSHLKGVFAQMKSQYGDKYMDDPQVA 61

Query: 71  ----ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
               +  +  VQ L+ + +   E +K GI      +     +   N      D      +
Sbjct: 62  QQILQQRQSVVQGLVTDKVLGIEADKLGIKPSEEEIKKKVDEQFENIKKGMGDNFDKALE 121

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
                    + +    +    V++  +      + +      + K   V +         
Sbjct: 122 AEGYTEDTFKDVIKNQVINQAVQDYIIKDVKVTDEDAQKYYDENKQQFVAKDSGVLTKHL 181

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
           + +N+ + Q    +             K  N   +   K    ++G         +    
Sbjct: 182 LFENEEEAQKAYDEIQSGKTTFNDLFTKYENNKSEN-KKPIAENLGVVPAENSGLVQEFV 240

Query: 247 QNLLKKSQNNTTNPYVTQKGVEYIAI---CDKRDLGGEIALKAYLSAQNTPTKIEKHEAE 303
             L    +   + P  TQ G   I      +K        +K+ +       K  +    
Sbjct: 241 DGLKPLKEGEISKPIKTQFGYHIIQAGATYEKGAQLPFDEVKSQIIQILKQQKDSEKFKA 300

Query: 304 YVKKLRSNAIIHYY 317
            + + + +  +  Y
Sbjct: 301 DMDQWKKDLNVKVY 314


>gi|167586945|ref|ZP_02379333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ubonensis Bu]
          Length = 259

 Score = 87.4 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 81/278 (29%), Gaps = 48/278 (17%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKING--ELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I        +A L  Q      ++++   QEL+   +  QE  + GI    +
Sbjct: 25  IAVVNGTPIPKSRADAMVAQLVQQGQPDSPQMQQAVRQELVNREILMQEAIRRGIPNRPD 84

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q++    +  DF+ K    +
Sbjct: 85  VKAQV-------------------------------AVAQQTVVLRALIEDFLKKNQPTD 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+ A   ++        L    +    + + ++     K             K  +  +
Sbjct: 114 AEVKARYDELVKGAANRELHLHHILVDNEQQAKDLIAKIKA----------GAKFEDLAK 163

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT-NPYVTQKGVEYIAICDKRD 277
           +++       + G   +       P+F     K  +   T  P  TQ G   I + D R 
Sbjct: 164 QYSKDPGSGKNGGDLDWADPKAYVPEFAAAATKLQKGQMTDEPVKTQFGWHIIRVDDVRS 223

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +         +  Q     +++    + + LR  A + 
Sbjct: 224 VAP--PPFDQVKPQIAQQMVQQKLQAFEESLRQQAKVQ 259


>gi|229160220|ref|ZP_04288219.1| Foldase protein prsA 2 [Bacillus cereus R309803]
 gi|228623181|gb|EEK80008.1| Foldase protein prsA 2 [Bacillus cereus R309803]
          Length = 285

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/304 (10%), Positives = 77/304 (25%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + ++S       S    T     IT  D  K++             K  
Sbjct: 4   KHIFIITALISILMLSACGQKNGSTTVATAIDSTITKSDFEKQLK--------DRYGKDM 55

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           + E++ + +  ++ + S    D                +  +    F           + 
Sbjct: 56  LYEMMAQDVITKKYKVSDDDVDKEL-----------NKVKNQYGDQFKTVLENNRLKDEA 104

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 105 DFKNQIKFKLAMNEAVKKSVTEKDVKD--------------------HYKPDIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ ++            ++ +  +      G   Y     + P+F+    K   
Sbjct: 145 SDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFASGTMTPEFETAAYKLKV 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              +NP  +  G   I + DK+DL     +K  +       +I       + ++     A
Sbjct: 205 GQISNPVKSSNGYHIIKLTDKKDLKPYNEVKDSIRKNLEEERIADPTFSQKLLQDELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|187777480|ref|ZP_02993953.1| hypothetical protein CLOSPO_01048 [Clostridium sporogenes ATCC
           15579]
 gi|187774408|gb|EDU38210.1| hypothetical protein CLOSPO_01048 [Clostridium sporogenes ATCC
           15579]
          Length = 348

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/328 (12%), Positives = 103/328 (31%), Gaps = 21/328 (6%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDIS------KRIALL 63
              + +L     ++ F    +V     A +      +NGE I   D+       + +  +
Sbjct: 17  KKLLSVLCLGIFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLEENPRLKQVVNQM 76

Query: 64  KLQKING------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
           K+Q                E +   + ELI E +  Q+ ++  +      +N    +   
Sbjct: 77  KMQYGEEFEKSEQGKEVLKEQKSQILDELITEKVLLQKGKELKVIPKDEELNKEVDKKFN 136

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
                  +     ++        K+ L        +++        ++++E    K+   
Sbjct: 137 EIKAVYNNDEKKFEETLKSTGFTKETLKEYLKSQIIIEKVINEATKDVKVEDKDAKKYYN 196

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
                 +  +    ++    ++ +   +K  K  +             +   SK     +
Sbjct: 197 ENQS-MFTEKPNTMNVSHILVKTEDEAKKVKKRLDSKEDFAKVAKEVSQDPGSKDKGGLL 255

Query: 232 GKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLS 289
           G   Y   +      +  +   Q   +N   TQ G   I I  K++  +    A+K  + 
Sbjct: 256 GDINYNDANFDPTFMKAAIALKQGAVSNAVHTQFGYHIIKINSKKEYPVKKYDAVKEDIK 315

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            +    K ++   + +++ +  + I  Y
Sbjct: 316 KELKMEKQKEAYTKKIEEWKKASKIKTY 343


>gi|83816066|ref|YP_445916.1| peptidylprolyl cis-trans isomerase [Salinibacter ruber DSM 13855]
 gi|294507826|ref|YP_003571884.1| peptidyl-prolyl cis-trans isomerase surA [Salinibacter ruber M8]
 gi|83757460|gb|ABC45573.1| peptidylprolyl cis-trans isomerase [Salinibacter ruber DSM 13855]
 gi|294344154|emb|CBH24932.1| Peptidyl-prolyl cis-trans isomerase surA [Salinibacter ruber M8]
          Length = 464

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/293 (10%), Positives = 90/293 (30%), Gaps = 19/293 (6%)

Query: 33  YKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI---NGELEKIAVQELIVETLK-KQ 88
            ++  +  RI   +  E++   ++ + +     Q+    +  L   A+++L+ + L  +Q
Sbjct: 36  GQNAQVVDRIAAVVGDEIVLKSEVDQLVRRQTRQQNVSYSNSLWMEALRQLVDQKLLAEQ 95

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV- 147
               + IT     ++    +        A          G      K+          + 
Sbjct: 96  ARRDTTITVSDQQLSDQLDRRISQYVERAGSEERLEQAYGKSILEIKEQFREDLRGQILS 155

Query: 148 --VKNDFMLKYGNLEMEIPANKQKMKNIT----VREYLIRTVLFSIPDNKLQNQGFVQKR 201
             ++   M        E+    +++   +     +   +  ++      +   Q      
Sbjct: 156 QQLRRRRMQSIDITPSEVRQWFEQIPQDSLPQLPKTVRLSHIVRYPKPTEASRQQAKSLI 215

Query: 202 IKDAEESRLRLPKDCNKLEKFAS-KIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTN 259
               +              +F++      + G    +  +DL P+F  +  ++     + 
Sbjct: 216 TSVRDSIVNGGASLEAMARQFSAPDAAGTASGALTDVNLNDLVPEFAAVASRTPVGQISQ 275

Query: 260 PY--VTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
           P+   +Q G   + I  K     ++    ++  +       K   EY+  +R 
Sbjct: 276 PFYNESQNGFHILRIDAKDGSTVDL---HHVLIKPNAP-TGKRAKEYLSAVRD 324



 Score = 42.0 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/259 (6%), Positives = 52/259 (20%), Gaps = 21/259 (8%)

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
            ++    L       ++      + + +     D+       +       L  E  +   
Sbjct: 207 SRQQAKSLITSVRDSIVNGGASLEAMARQFSAPDAAGTASGALTDVNLNDLVPEFAAVAS 266

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
                  +      +        +            + I  N    K        +R  L
Sbjct: 267 RTPVGQISQPFYNESQNGFHILRIDAKDGSTVDLHHVLIKPNAPTGKRAKEYLSAVRDTL 326

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
            +  D   +             ++  R+    +                           
Sbjct: 327 VNNEDVSFERMARRHSEEDRTAQNGGRVTDPESGARDLVLDA-------LG-------PS 372

Query: 245 QFQNLLKKSQNNTTNPYVTQ-----KGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKI 297
             + +      + + P   Q     +    + +  +              +  +    K 
Sbjct: 373 WTRTIRPLEAGDISEPSRVQLLNDDEAYHIVRLDRRVPAHRASLETDYEQIRQRALQDKR 432

Query: 298 EKHEAEYVKKLRSNAIIHY 316
            +   E+  +LR    +  
Sbjct: 433 SRKMREWTDQLREKIYVDI 451


>gi|325107411|ref|YP_004268479.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces
           brasiliensis DSM 5305]
 gi|324967679|gb|ADY58457.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces
           brasiliensis DSM 5305]
          Length = 423

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/306 (12%), Positives = 95/306 (31%), Gaps = 24/306 (7%)

Query: 34  KSWAMSSRIRTTINGEVITDGDI----SKRIALLKLQKINGEL----EKIAVQEL---IV 82
               + S +   +NG  +  GD+    ++++  ++ Q  + +      ++  ++L   I 
Sbjct: 99  SPVILDSTVVAVVNGNTVLAGDVFAPYARQMVKMREQLTDEQYLAAQRELLKRDLPGHIE 158

Query: 83  ETLKKQE---------IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
            TL             I+K     D     +      +    SA +    L  +G     
Sbjct: 159 RTLLSHALKSTLKQEQIDKLDGVLDQAFAEHVEKLLVKTETSSALELDKKLQSEGTSLAD 218

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
            +Q    Q +    +  +  +      +++    ++  +       ++     +     Q
Sbjct: 219 IRQTFGTQQLAMQYLATESQVNVQLGRVDLLNYYRENLDRFSHPTRVKWQEIRVSITPQQ 278

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL--HPQFQNLLK 251
           ++     ++ +  +         +   +++        G   +  E  L      + L  
Sbjct: 279 DRRAAVMKLNEVVKKLQEGVAFPDVAREYSDGPTASQGGNWDWTKEDSLADVELNKELFS 338

Query: 252 KSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
                 +    T K    I + ++ D        L+  L  +    K  +  AE ++KL 
Sbjct: 339 LPTGAISRIIETDKYFRIIRVVEREDAHVTPFEKLQDGLREEIRSKKRHEKTAEVLRKLN 398

Query: 310 SNAIIH 315
             A+I 
Sbjct: 399 ETAVIQ 404


>gi|134094945|ref|YP_001100020.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Herminiimonas arsenicoxydans]
 gi|133738848|emb|CAL61895.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase
           [Herminiimonas arsenicoxydans]
          Length = 258

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/307 (13%), Positives = 87/307 (28%), Gaps = 53/307 (17%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVI--TDGDISKRIALLKLQKING 70
           + L   + ++ +F    + +             +NG+ +  +  DI  +    + Q+   
Sbjct: 1   MTLKPAHLLVALFVSAALPAMAQN------LAVVNGKPVPSSRADIMIKQMAAQGQQDTP 54

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
           EL  +  +ELI   +  QE +K G+  ++   +                           
Sbjct: 55  ELRAMVKEELINREILIQEADKLGLGTNAEVKSQV------------------------- 89

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                +      +   +V +                 +     + +EY  R +L      
Sbjct: 90  -----EIARQSILIRALVADFLKKNPVKDADIKAEYDRFRAQASDKEYHARHIL------ 138

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL 250
                   ++  K          K     ++        + G   +   +     F + +
Sbjct: 139 -----VEKEEDAKAIIAKLKGGAKFEELAKQSKDPGSADNGGDLDWAAPAAFVKPFSDAM 193

Query: 251 KKSQNN--TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
              Q       P  TQ G   I + D R    +I     +  Q      +K    + ++L
Sbjct: 194 VSLQKGQLYDTPVKTQFGYHVIKLDDVR--AAKIPTLEEVKPQIAEGLQQKKLQAFQQQL 251

Query: 309 RSNAIIH 315
           R+ A I 
Sbjct: 252 RAKAKIQ 258


>gi|319650163|ref|ZP_08004311.1| post-translocation molecular chaperone [Bacillus sp. 2_A_57_CT2]
 gi|317398145|gb|EFV78835.1| post-translocation molecular chaperone [Bacillus sp. 2_A_57_CT2]
          Length = 298

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/306 (10%), Positives = 88/306 (28%), Gaps = 38/306 (12%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K + +  +      +   S         +  T +G  IT  ++ + +          +  
Sbjct: 3   KWMLSLSIAAGVIGLSACSSTGGESGDVVVETKSGN-ITKDELYEAMK--------EKYG 53

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           + A+QELI E +                +N    +  +  G + E               
Sbjct: 54  EQALQELIYEKVL-----SDKYEVTDEELNEKIDELKQQLGANFEMAL------MQYGYK 102

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
            ++ L        + +   +      E E+       K      ++              
Sbjct: 103 DEEDLRETFKTGLLQEKAAIKDIEATEKEVKEYYDNYKPEIKARHI-------------- 148

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK 252
                +K   + ++      K  +   +++       + G   +     + P+F+     
Sbjct: 149 -LVEDEKTADEVKKKLDEGGKFEDLATEYSKDPGSAANGGDLGWFGPGKMVPEFEEAAYA 207

Query: 253 -SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE-KHEAEYVKKLRS 310
              N  + P  ++ G   I + +K++      +K  +  Q   +K++     + + +   
Sbjct: 208 LDVNEISAPVKSEHGFHIIQVTEKKEKKSFDEMKKEMEYQVKVSKLDGDKIQQAMDRELK 267

Query: 311 NAIIHY 316
            A +  
Sbjct: 268 AADVDI 273


>gi|187933209|ref|YP_001887564.1| foldase protein PrsA [Clostridium botulinum B str. Eklund 17B]
 gi|187721362|gb|ACD22583.1| foldase protein PrsA [Clostridium botulinum B str. Eklund 17B]
          Length = 247

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/281 (8%), Positives = 74/281 (26%), Gaps = 39/281 (13%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
           M +++   + G  I D D+   +     ++      +   + L+ + +  + +   G   
Sbjct: 1   MENKVLAIVAGNEIKDKDLDTVLNRYPQERRAMFQGEQGREALLEQVVAFELMRNFGKEL 60

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
             +    +          +                              +  N  +    
Sbjct: 61  KIDETEEYKNLVEGLAKEAL---------------------------TQLAINKVLADVT 93

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             + ++        ++ +    +      +   +       +                  
Sbjct: 94  VTDEDVKKYYDDNSSMFINPPTVSAKHILVKTEEEATSIKEEIA---------NGLAFEE 144

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR 276
             +K+++       G      +  + P+F+ +  +      + P  TQ G   I + DK 
Sbjct: 145 AAKKYSTCPSKEQGGSLGNFGKGSMVPEFEKVAFESEVGKVSEPVKTQFGYHLILVEDKT 204

Query: 277 DLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +        +K  +  Q    + +    E +K+L     + 
Sbjct: 205 ESTTVPFDQVKDAVLKQLINERQQNKYLEMIKQLSDKYGVE 245


>gi|308172978|ref|YP_003919683.1| molecular chaperone lipoprotein [Bacillus amyloliquefaciens DSM 7]
 gi|307605842|emb|CBI42213.1| molecular chaperone lipoprotein [Bacillus amyloliquefaciens DSM 7]
          Length = 285

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/303 (9%), Positives = 84/303 (27%), Gaps = 42/303 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +  I     +      +  + +    +   +T G++   +               
Sbjct: 1   MKKIAIATITATSVLALSACSSGDNDVIAKTDAGNVTKGELYTNMK--------KTAGAS 52

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            + +L+ E +  ++ + S    D                L             +   + +
Sbjct: 53  VLTQLVQEKVLAKKYKVSDKEID--------------NKLKEYKTQLGDQYSALKQQYGE 98

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
            YL  Q  +  + +          + +       +K      +++               
Sbjct: 99  DYLKDQVKYELLAQKAAKDNIKVTDSDTKEYYDGLKGKIRASHIL--------------- 143

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQ 254
              +K   + E+   +  K     +++++     + G   +  +  +   F +       
Sbjct: 144 VADKKTADEVEKKLKKGEKFETLAKEYSTDSSKDNGGDLGWFDKKSMDETFSKAAFGLKV 203

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              ++P  T+ G   I   ++R  G    +K  L  +    K+         ++K+   A
Sbjct: 204 GQVSDPVKTKFGYHIIKKTEER--GKYDDMKKELKEEVLKQKLNDNSAVQAAIQKVMKKA 261

Query: 313 IIH 315
            + 
Sbjct: 262 DVK 264


>gi|156935006|ref|YP_001438922.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156533260|gb|ABU78086.1| hypothetical protein ESA_02857 [Cronobacter sakazakii ATCC BAA-894]
          Length = 625

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/397 (10%), Positives = 99/397 (24%), Gaps = 85/397 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + +  +  +    +++ F +  + +Y     S+     +N + I+   +   +
Sbjct: 1   MMDNLRAAANHVVLKIILGLIILSFVLTGVSNYLIGGNSNY-AAKVNDQEISRAQLENAV 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
            + +                      EL + A+Q LI E L  Q      +      V  
Sbjct: 60  NIERNNLERRLGDRFSELASNEQYMAELRQRALQGLIDEALIDQYARSLHLNISDEQVRQ 119

Query: 105 FFVQ---HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML------- 154
              +      +       +++ +   G+  + + Q L  Q     +V             
Sbjct: 120 SIFKNPAFQSDGKFDNARYNAIITSMGMSADQYAQALRNQLTTDQLVSAVMGSDFILPGE 179

Query: 155 --------------------------KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                     K    E EI    Q+  N        R     + 
Sbjct: 180 SDQFAALFAQQRQVRTATIAVDALAQKQQVSEQEIKDYYQQHTNNFQSPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              L       +     ++                                +        
Sbjct: 240 AAALAENASEDEIQAYYDKHQDEFGQPQRNRYSLIQTKTEDEAKAILAQLKQGADFATLA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ +   I   + G   +L       +F+N   K +   ++   +  G   + + D    
Sbjct: 300 KEKSVDVITARNGGDMGWLEPGTTPDEFKNAGLKEKGQLSDVIKSSVGFLIVRLDDITPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             +    +   +SA+    K         +K+   A 
Sbjct: 360 TVKPLSEVHNDISAKVKQEKALDAFFALQRKVSDAAN 396



 Score = 36.6 bits (82), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 264 QKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           Q  V  +A+ + R      A K  ++ + T    E      +K LR +A I 
Sbjct: 564 QGNVVLLALDEVRSGTMPDAQKKAMAQRLTQNNAEIAFDALLKGLRKDAKIK 615


>gi|295397248|ref|ZP_06807346.1| peptidyl-prolyl cis-trans isomerase [Aerococcus viridans ATCC
           11563]
 gi|294974529|gb|EFG50258.1| peptidyl-prolyl cis-trans isomerase [Aerococcus viridans ATCC
           11563]
          Length = 376

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/288 (9%), Positives = 69/288 (23%), Gaps = 31/288 (10%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K      + ++  +         +  S    T +G  +T+ ++   +             
Sbjct: 5   KKFKLTSIALLSTVALAACSTGSSDGSSAVATGDGVEVTNEELQAELK--------STYG 56

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
              +Q+LI+E +   E+                       G   E  +            
Sbjct: 57  NTVLQKLIMEEVFVNEVGDDRAKELKEEATTEVETLIATYGGEDEFNTVLASS----GFS 112

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
            ++    Q  +  ++           + EI              +++             
Sbjct: 113 DREDYEHQVYYYKLMSESVSKYIEVTDEEIQTAYDDYTPSFTVSHIL------------- 159

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESD--LHPQFQNLL 250
                ++  KD               ++ ++      + G    +          F    
Sbjct: 160 --VDDEETAKDLIAQLDDGADFAELAKENSTDTSSAKNGGSLGEVNADSGLDETFFAAAQ 217

Query: 251 KKSQNNTT-NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
           + ++   T  P  T  G   I + +K + G        L       K+
Sbjct: 218 ELAEGEYTTAPVETDYGYHIIKMDEKPEKGSLEDETEQLKESIVAEKL 265


>gi|168181007|ref|ZP_02615671.1| foldase protein PrsA [Clostridium botulinum NCTC 2916]
 gi|226950994|ref|YP_002806085.1| peptidylprolyl isomerase [Clostridium botulinum A2 str. Kyoto]
 gi|254783410|sp|C1FNE4|PRSA_CLOBJ RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|182668154|gb|EDT80133.1| foldase protein PrsA [Clostridium botulinum NCTC 2916]
 gi|226843437|gb|ACO86103.1| prsA family protein [Clostridium botulinum A2 str. Kyoto]
          Length = 336

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/332 (12%), Positives = 103/332 (31%), Gaps = 21/332 (6%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
             S    + +L     ++ F    +V     A +      +NGE I   D+ +  ++ ++
Sbjct: 1   MKSAKKLLSVLCLGIFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLDESPSMQQV 60

Query: 66  QKING------------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
                                  E +K  ++ LI E +  Q+ ++  +      +N    
Sbjct: 61  LSQIKTQYGEEFEKTEQGKEVIKEQKKQILENLITEKVLLQKGKELKVIPKDEELNKEAD 120

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
           +          +     ++        K+ L        V++   + +          + 
Sbjct: 121 KKVNEIKAVYNNDEKKFEETLKSTGFTKETLKEYLKDQIVIE-KVINEVTKDVKVEDKDA 179

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
           QK  N     +  +    ++    ++ +   +K  K  +             +   SK  
Sbjct: 180 QKYYNENQSMFTEKPNTMNVSHILVKTEDEAKKVKKRLDAKEDFAKVAKEVSQDTGSKDK 239

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALK 285
              +G   Y   +      +  +       +NP  TQ G   I I  K++  +    ++K
Sbjct: 240 GGLLGDISYSDSNFDPTFMKAAIALKSGAISNPVHTQFGYHIIKINSKKEYPVKKFDSVK 299

Query: 286 AYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
             +  Q    K ++   + +++ +  + I  Y
Sbjct: 300 EDIKKQLKQEKQQEAYTKKIEEWKKASKIKTY 331


>gi|312796419|ref|YP_004029341.1| peptidyl-prolyl cis-trans isomerase [Burkholderia rhizoxinica HKI
           454]
 gi|312168194|emb|CBW75197.1| Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) [Burkholderia
           rhizoxinica HKI 454]
          Length = 638

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/274 (12%), Positives = 73/274 (26%), Gaps = 23/274 (8%)

Query: 54  GDISKRIALLKLQKINGEL-EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR- 111
            D+ +   LL +Q +  EL ++    +L    L       +              + +R 
Sbjct: 134 YDVDQYKQLLAMQGMTPELFDERVRYQLASRQLPDGIQASAFAPKSLAQQLASLSEQSRE 193

Query: 112 ----------NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
                                         + F         +  +  +    +    E 
Sbjct: 194 VQGLMLRATDYADKVQPSDVQLKQYYDAHHDAFAMPERASVEYLMLSADALAQRAQPSEA 253

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           E+                +R     I      +Q    K  + AE    ++     +  K
Sbjct: 254 ELKKYYDDHAAKFKTPGEVRASHILIAVAASASQAERDKARQKAESILAQVTAHPEQFAK 313

Query: 222 FASKIHD-----VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK 275
            A +  D        G   +     +   F +   K  ++  ++   +  G   I + D 
Sbjct: 314 LAQQNSDDPGSKNKGGDLGFFGPGMMVKPFSDAAFKLKKDQISSIVQSDFGYHIIKVTDI 373

Query: 276 RD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
           +         +KA ++ +    K E+    YV++
Sbjct: 374 KPEQTKPFDEVKATIATEL---KAEQATKAYVEQ 404


>gi|197334554|ref|YP_002155561.1| peptidyl-prolyl cis-trans isomerase D [Vibrio fischeri MJ11]
 gi|197316044|gb|ACH65491.1| peptidyl-prolyl cis-trans isomerase D [Vibrio fischeri MJ11]
          Length = 618

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/402 (7%), Positives = 93/402 (23%), Gaps = 90/402 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++    +     +    ++  F    + SY        +   +    IT  +  +  
Sbjct: 1   MMDRIREGSTGLAVKIILGLIIFSFVFAGVGSYL-VGGGQPLAAKVGEREITRNEFEQVY 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELI-----------------VETLKK 87
              + +  +                 +  K  +  ++                  + +++
Sbjct: 60  QNERNRMQSQLGEYFATLLGDPAYVEQFRKSVLDRMVNDALLDNQAQDLGLRISDDQIRQ 119

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK-------------------QG 128
             +       D       +    R  G S++ F+++L +                     
Sbjct: 120 TILSMPQFQKDGKFDEEIYNISLRRAGFSSDSFAAYLRQDLARNQLVMALESTEFTLSNE 179

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
           +      +    +     +   DF       + EI       K   VR   ++     + 
Sbjct: 180 VQAQAALETQQREIRTITLNTADFAKNAKVTDEEITEYYNANKQQFVRPEQVKVSYVELS 239

Query: 189 DNKLQNQGFV--------------------------------QKRIKDAEESRLRLPKDC 216
            N L+ Q  +                                +   +   +         
Sbjct: 240 GNSLKAQAPITDKEIEEYYQANLDKYSTQEKREVSHILIKGDEADAQKVLDRINNGEDFA 299

Query: 217 NKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK--SQNNTTNPYVTQKGVEYIAIC 273
              +  +         G   ++    + P+F++   +     + +    +  G   I + 
Sbjct: 300 TVAKDASQDIPTAKEGGSLGWIERGVIDPEFEDAAFQLAKVGDHSGIVKSAFGFHIIQLN 359

Query: 274 DKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
              +   +    + A + +                +L   A 
Sbjct: 360 GIEEPTTKPLAEVSADIKSFLVDEHAADAFYSLQTELAEKAF 401


>gi|170756164|ref|YP_001783178.1| peptidylprolyl isomerase [Clostridium botulinum B1 str. Okra]
 gi|226712003|sp|B1IGZ5|PRSA_CLOBK RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|169121376|gb|ACA45212.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
           B1 str. Okra]
          Length = 336

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/332 (12%), Positives = 103/332 (31%), Gaps = 21/332 (6%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
             S    + +L     ++ F    +V     A +      +NGE I   D+ +  ++ ++
Sbjct: 1   MKSAKKLLSVLCLGIFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLDESPSMQQV 60

Query: 66  QKING------------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
                                  E +K  ++ LI E +  Q+ ++  +      +N    
Sbjct: 61  LSQIKTQYGEEFEKSEQGKEVIKEQKKQILENLITEKVLLQKGKELKVIPKDEELNKEAD 120

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
           +          +     ++        K+ L        V++   + +          + 
Sbjct: 121 KKVNEIKAVYNNDEKKFEETLKSTGFTKETLKEYLKDQIVIE-KVINEVTKDVKVEDKDA 179

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
           QK  N     +  +    ++    ++ +   +K  K  +             +   SK  
Sbjct: 180 QKYYNENQSMFTEKPNTMNVSHILVKTEDEAKKVKKRLDAKEDFAKVAKEVSQDTGSKDK 239

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALK 285
              +G   Y   +      +  +       +NP  TQ G   I I  K++  +    ++K
Sbjct: 240 GGLLGDISYSDSNFDPTFMKAAIALKSGAISNPVHTQFGYHIIKINSKKEYPVKKFDSVK 299

Query: 286 AYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
             +  Q    K ++   + +++ +  + I  Y
Sbjct: 300 EDIKKQLKQEKQQEAYTKKIEEWKKASKIKTY 331


>gi|197104227|ref|YP_002129604.1| peptidyl-prolyl cis-trans isomerase family protein
           [Phenylobacterium zucineum HLK1]
 gi|196477647|gb|ACG77175.1| peptidyl-prolyl cis-trans isomerase family protein
           [Phenylobacterium zucineum HLK1]
          Length = 318

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/318 (9%), Positives = 76/318 (23%), Gaps = 61/318 (19%)

Query: 14  KLLTTYFVLIIFCIVPIVSYK------SWAMSSRIRTTINGEVITDGDISKRIALLKL-- 65
           K L T  +++                            ++G  +   D+ +      L  
Sbjct: 5   KPLRTACLVLALAGTLAACGGNGDGDRPPERGDVAVARVDGRTVWASDVKREAVAQGLIG 64

Query: 66  ----QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
                    +L +  + E++ + L   E  K  +  D                       
Sbjct: 65  EGEPLDPASDLFRRVLDEVVDQKLLAAEALKRNLDEDPVAQRRL---------------- 108

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
                              + +   ++++          +     +Q+       E   R
Sbjct: 109 --------------AAARDRILGDMLIEDVVADAVTENNIRGLYAEQQRVAKRQEEIRAR 154

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLES 240
            ++ +   +    +  +                      + +       + G   Y    
Sbjct: 155 QIVLATEADAEAVKKLLAA-----------GASFEALAMERSRDPETRFNGGDLGYFTTD 203

Query: 241 DLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKI 297
            +   ++             P+  + GV  + + D+R        A +  +    T  + 
Sbjct: 204 VMPEAYELALKTAKPGEIVGPFEVEGGVALVKVEDRRLEQPITLEAARPQIVRFLTYDR- 262

Query: 298 EKHEAEYVKKLRSNAIIH 315
                + ++KLR  A I 
Sbjct: 263 ---IRDLLEKLRGKAKIE 277


>gi|320103204|ref|YP_004178795.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Isosphaera pallida
           ATCC 43644]
 gi|319750486|gb|ADV62246.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Isosphaera pallida
           ATCC 43644]
          Length = 436

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 26/302 (8%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQK----------INGELEKIAVQELIVETLKK 87
             S +   +   VIT G++   I     Q              ++EK+ + E I   L  
Sbjct: 114 SDSTLAARVGDAVITRGELDHEIDRFAQQNGVSLATLTPEERLQVEKMVLNERIDRELIL 173

Query: 88  QEIEKSGITFDSNTVNYFFVQH-----------ARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           QE  +   T +       F                    +  +   ++ +QG   +   +
Sbjct: 174 QEARRVLKTPEQWAKISEFANQRWEAEEAPSLLREAGVETLVELKEWMKRQGRDLDQELE 233

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
              ++ I  + ++     +      E+ A+ Q+ +    RE  +          ++  + 
Sbjct: 234 DYRVKVITTEYLRMTLGPRLQVDLPEMLADYQQRREQFRREARLVWRELLADPARVGGRE 293

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
                 ++  E         +     +  +     G+ +   E     +    L      
Sbjct: 294 AAAGLARNWLERLQHGEDFAHIARTESHGVTASDGGRWETTPEGYNRREVNQALAAMTPP 353

Query: 257 TTNP--YVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
            + P    ++ GV  I +  +          ++  L  +    K+++     +++LR   
Sbjct: 354 -SPPVLVESEDGVHVIQLESRTQAGFQPFSDVQDQLRERLFQAKLQQESRRLLERLRQTT 412

Query: 313 II 314
            I
Sbjct: 413 PI 414


>gi|225872709|ref|YP_002754166.1| peptidylprolyl cis-trans isomerase, putative [Acidobacterium
           capsulatum ATCC 51196]
 gi|225793467|gb|ACO33557.1| peptidylprolyl cis-trans isomerase, putative [Acidobacterium
           capsulatum ATCC 51196]
          Length = 660

 Score = 87.0 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 63/241 (26%), Gaps = 9/241 (3%)

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           +     KQ   + G+  +            +    +     ++  +              
Sbjct: 184 VSPEQVKQYYLQQGLKINFQYAVLDSNALRQTINPTDAQLQTYFKQNAGRYAKAIPETRS 243

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
                              + EI       ++       ++     I   +      V  
Sbjct: 244 IQYIAFQDSQIPGGAPQVTDAEIQQYYNAHQDQYKVPEEVKVRHILIQVPQGAPAATVAA 303

Query: 201 RIKDAEESRLRLPK-----DCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ 254
               A+    +L +          +K++         G+  ++ +    P F + +    
Sbjct: 304 AKTKAQSVLDQLKQANGKNFAELAKKYSDDPGSKDQGGELGWVKQGMTVPAFDHAIFTMP 363

Query: 255 -NNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
               ++   TQ G   I + DK     E    ++A + +  T  K     A Y ++L   
Sbjct: 364 VGQISDLVRTQYGFHIIQVEDKHTAHTEALSDVRAQILSTLTQQKENDAAASYAQQLAKE 423

Query: 312 A 312
           A
Sbjct: 424 A 424


>gi|293392541|ref|ZP_06636861.1| peptidyl-prolyl cis-trans isomerase D [Serratia odorifera DSM 4582]
 gi|291424943|gb|EFE98152.1| peptidyl-prolyl cis-trans isomerase D [Serratia odorifera DSM 4582]
          Length = 627

 Score = 87.0 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/399 (9%), Positives = 103/399 (25%), Gaps = 87/399 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + ++ +  +    +++ F +  + +Y            +NG+VI    + +  
Sbjct: 1   MMDNLRAAANNVVLKIILALIILSFVLTGVGNYLIGGSGDY-AAKVNGQVIERAQLEQAF 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                    +L + A+ +LI   L  Q  +K G++   + V  
Sbjct: 60  QSERSRMQQQLGEQFSALAGNEGYMQQLRQQALSQLIDNMLLDQYAKKLGLSISDDQVKD 119

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN----------- 150
                     N       +   + + G   +++ Q +  Q +   V++            
Sbjct: 120 AIRKAPYFQTNGQFDNAKYLDLITRMGYSADNYAQSMRQQLLNQQVIQAFGNSGFVLPSE 179

Query: 151 ----------------------DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI- 187
                                     K    + E+     + KN  +    +      + 
Sbjct: 180 SDAMAALVLQERDVRLATIDLNALQAKQNVSDDELKEYYNQNKNSFIAPEQVEVSYIPMD 239

Query: 188 ------------------------------PDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
                                           N    Q   +   K   +   +      
Sbjct: 240 AAAMQSKITVNDADISAYYDQHKSSYGQPERKNYSVIQLKTEAEAKAVLDELNKGADFAT 299

Query: 218 KLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
             ++ ++  I   + G+  +L       + +      +   +    +  G   + + D  
Sbjct: 300 LAKEKSTDIISKRNGGELGWLEPDTTADELKEAKLSEKGQLSGVVKSSVGYLIVRLNDVE 359

Query: 277 DLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
               +    ++  ++ +    K         +K+   A 
Sbjct: 360 PEKLKPLSEVRDSIADKVKQEKAVDAYYALQQKVSEAAT 398


>gi|59711407|ref|YP_204183.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Vibrio fischeri
           ES114]
 gi|59479508|gb|AAW85295.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Vibrio fischeri
           ES114]
          Length = 618

 Score = 87.0 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/402 (7%), Positives = 93/402 (23%), Gaps = 90/402 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++    +     +    ++  F    + SY        +   +    IT  +  +  
Sbjct: 1   MMDRIREGSTGLAVKIILGLIIFSFVFAGVGSYL-VGGGQPLAAKVGEREITRNEFEQVY 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELI-----------------VETLKK 87
              + +  +                 +  K  +  ++                  + +++
Sbjct: 60  QNERNRMQSQLGEYFATLLGDPAYVEQFRKSVLDRMVNDALLDNQAQDLGLRISDDQIRQ 119

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK-------------------QG 128
             +       D       +    R  G S++ F+++L +                     
Sbjct: 120 TILSMPQFQKDGKFDEEIYNISLRRAGFSSDSFAAYLRQDLARNQLVMALESTEFTLSNE 179

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
           +      +    +     +   DF       + EI       K   VR   ++     + 
Sbjct: 180 VQAQAALETQQREIRTITLNTADFAKNAKVTDEEITEYYNANKQQFVRPEQVKVSYVELS 239

Query: 189 DNKLQNQGFV--------------------------------QKRIKDAEESRLRLPKDC 216
            N L+ Q  +                                +   +   +         
Sbjct: 240 GNSLKAQAPITDKEIEEYYQANLDKYSTQEKREVSHILIKGDEADAQKVLDRINNGEDFA 299

Query: 217 NKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK--SQNNTTNPYVTQKGVEYIAIC 273
              +  +         G   ++    + P+F++   +     + +    +  G   I + 
Sbjct: 300 TVAKDASQDIPTAKEGGSLGWIERGVIDPEFEDAAFQLAKVGDHSGIVKSAFGFHIIQLN 359

Query: 274 DKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
              +   +    + A + +                +L   A 
Sbjct: 360 GIEEPTTKPLAEVSADIKSFLVDEHAADAFYSLQTELAEKAF 401


>gi|258649206|ref|ZP_05736675.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Prevotella tannerae
           ATCC 51259]
 gi|260850471|gb|EEX70340.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Prevotella tannerae
           ATCC 51259]
          Length = 452

 Score = 87.0 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 77/275 (28%), Gaps = 13/275 (4%)

Query: 20  FVLIIFCIVPIVSYKSW--AMSSRIRTTINGEVITDGDISKRIALLKLQKIN-GELEKIA 76
            +LI+F    + S       +   +   +  + I   D+ +     + +         I 
Sbjct: 4   VILILFGCWALCSQAQRPRNVVDEVIWVVGDDPIYLSDVEQARLYAESEGQALENPYCII 63

Query: 77  VQELIVETLKKQEIEKSGITF---DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
            +++ ++ L   + E   IT    D        +        S E   + + K       
Sbjct: 64  PEQIAIQKLYLHQAEIDSITVSEGDIIRAADEIINRYIQNIGSKEGVEAVMHKSISQLRE 123

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
             +      +     +     K      E+    + +   ++     +  +  I      
Sbjct: 124 DFKRSQRDRMRIQREQQRITEKVAITPAEVREYFKNLPADSLPLIPTQVEVEIITAQPQP 183

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-----HDVSIGKAQYLLESDLHPQFQN 248
            +  V++          R+     +    A           + G+  Y+    L P+F N
Sbjct: 184 TRAEVERIENKLRSFADRVNSGETEFSTLARFYSQDPGSSRNGGEMDYMGRGQLVPEFAN 243

Query: 249 LLK--KSQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           +          +    T+ G   I + DKR    +
Sbjct: 244 VAFSLSDPKKVSKIVKTEFGYHIIQLVDKRGDKVK 278


>gi|317047179|ref|YP_004114827.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. At-9b]
 gi|316948796|gb|ADU68271.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. At-9b]
          Length = 622

 Score = 87.0 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/396 (8%), Positives = 98/396 (24%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + +  +  +    +++ F +  + +Y     S      +NG  I+  ++ +  
Sbjct: 1   MMDNLRAAGNHVVLKIILGLIILSFVLTGVGNYLIGGNSDY-AAKVNGHEISRAELDQAY 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + ++                   ++ + A+ +LI + L  Q I+   I    + V  
Sbjct: 60  NTERNRQQQMLGDQFSQLASNEGYMQQMRQQALSQLIDQALLDQYIKDLHIGISDDQVKD 119

Query: 105 FFVQHAR---NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
                     N       ++  +   G   + + + L  Q     ++             
Sbjct: 120 AIFNQQAFQTNGKFDNVKYNGLITSMGFTADQYAEALRKQLATQQLINAVANTDFMLKGE 179

Query: 152 -----------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                     K    + EI    Q+ +N  +     R     + 
Sbjct: 180 TSKLVDLVAQQREIRQATIDVNALAAKQTVTDDEISQYYQQHQNSFMAPEQFRVSYIKMD 239

Query: 189 DNKLQNQGFVQKRIKDAEESR-----------------------------LRLPKDCNKL 219
              LQ            ++ +                              +        
Sbjct: 240 AASLQENASEADIQSWFDQHKADYSQPQRNRYSVIQTKTEADANAVLDALKKGEDFATLA 299

Query: 220 EKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           +  +         G   +L  +    + +N     +   +    +  G     + D +  
Sbjct: 300 KSKSIDPISARKGGDMGWLEPNTTPDELKNANLTEKGQLSGVIKSSVGFLIARLDDIQPE 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    +   ++ +    K      +  +K+   A
Sbjct: 360 QVKPLSEVHDAVADKVKQEKAVDAFYKMQQKVSEAA 395


>gi|153941271|ref|YP_001392892.1| peptidylprolyl isomerase [Clostridium botulinum F str. Langeland]
 gi|189037912|sp|A7GJD2|PRSA_CLOBL RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|152937167|gb|ABS42665.1| foldase protein PrsA [Clostridium botulinum F str. Langeland]
 gi|295320869|gb|ADG01247.1| foldase protein PrsA [Clostridium botulinum F str. 230613]
          Length = 336

 Score = 87.0 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/332 (12%), Positives = 102/332 (30%), Gaps = 21/332 (6%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
             S    + +L     ++ F    +V     A +      +NGE I   D+ +   + ++
Sbjct: 1   MKSAKKLLSVLCLGIFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLDESPNMQQV 60

Query: 66  QKING------------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
                                  E +K  ++ LI E +  Q+ ++  +      +N    
Sbjct: 61  LSQIKTQYGEEFEKTEQGKEVIKEQKKQILENLITEKVLLQKGKELKVIPKDEELNKEAD 120

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
           +          +     ++        K+ L        V++   + +          + 
Sbjct: 121 KKVNEIKAVYNNDEKKFEETLKSTGFTKETLKEYLKDQIVIE-KVINEVTKDVKVEDKDA 179

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
           QK  N     +  +    ++    ++ +   +K  K  +             +   SK  
Sbjct: 180 QKYYNENQSMFTEKPNTMNVSHILVKTEDEAKKVKKRLDAKEDFAKVAKEVSQDTGSKEK 239

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALK 285
              +G   Y   +      +  +       +NP  TQ G   I I  K++  +    ++K
Sbjct: 240 GGLLGDISYSDSNYDPTFMKAAIALKSGEISNPVHTQWGYHIIKINSKKEYPVKKFDSVK 299

Query: 286 AYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
             +  Q    K ++   + +++ +  + I  Y
Sbjct: 300 EDIKKQLKQEKQQEAYTKKIEEWKKASKIKTY 331


>gi|28209982|ref|NP_780926.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium tetani
           E88]
 gi|28202417|gb|AAO34863.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium tetani
           E88]
          Length = 246

 Score = 86.7 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/279 (11%), Positives = 83/279 (29%), Gaps = 39/279 (13%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS 99
           S++    NG  ITDGD++  IA    ++      +   + L+ E +  + I         
Sbjct: 2   SKVLAVFNGRKITDGDLNNTIAQFPAERQQFFKTEEGRKNLLNEIISFELIHDYAKDNKF 61

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
           +  + +  +       +   ++                            +  + +    
Sbjct: 62  DLDDLYLEKIEAIKKETLIQWTI---------------------------SKVLSEAEIK 94

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
           E +I       KN+ + E  + T    +   +       + +                  
Sbjct: 95  EEDIKEFYNNNKNMFIEEERVSTKHILVETKEEAENIVDEIK---------NGLSFEEAA 145

Query: 220 EKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDK--R 276
           +++++     + G         +  +F+    +  +   +NP  TQ G   I +  K  +
Sbjct: 146 KEYSNCPSKGAGGDLGTFGRGRMVKEFEEAAFEMKEGTISNPVKTQFGYHIIKLEKKYAK 205

Query: 277 DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                  +K  +  Q    K      ++ + L++   + 
Sbjct: 206 GTKEYNEVKDLIKKQLHQEKERDLYKKFTEDLKNKYSVE 244


>gi|83859697|ref|ZP_00953217.1| peptidyl-prolyl cis-trans isomerase family protein [Oceanicaulis
           alexandrii HTCC2633]
 gi|83852056|gb|EAP89910.1| peptidyl-prolyl cis-trans isomerase family protein [Oceanicaulis
           alexandrii HTCC2633]
          Length = 330

 Score = 86.7 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/281 (10%), Positives = 70/281 (24%), Gaps = 51/281 (18%)

Query: 39  SSRIRTTINGEVITDGDISKRIALL------KLQKINGELEKIAVQELIVETLKKQEIEK 92
            S+I   +   +IT  D+ +    L      +    + ++ +  + +LI + L   E   
Sbjct: 54  QSQIAARVGETIITVDDVRREAVSLGLTETPQALMPSDQVFRDTLSDLIDQRLLALEAVA 113

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             +  D                                          + +   +V+N  
Sbjct: 114 RDVQDDEEARLRL------------------------------AAAEERILGNILVENAI 143

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
                +  +E+   +Q        E   R +L              ++   +        
Sbjct: 144 ASAVTDEAVELVYEEQSRLAPRTEEIRARHIL-----------VETREEADEVARLLAEG 192

Query: 213 PKDCNKLEKFASK-IHDVSIGKAQYLLE-SDLHPQFQNLLKKSQNNTTNPYVTQKGVEYI 270
                   + +       S G   Y      L    Q      +   + P+ T+ G   +
Sbjct: 193 SDFGQLAAQVSRDLATRFSGGDLGYFTRTGILPGFAQVAFATDEGAVSAPFETEYGWHVL 252

Query: 271 AICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            + D+R           +          +   + ++ LR  
Sbjct: 253 QVMDRRLQP--RESLEEVRPNIVRFLTLQGIDDLLEVLRER 291


>gi|203287575|ref|YP_002222590.1| basic membrane protein [Borrelia recurrentis A1]
 gi|201084795|gb|ACH94369.1| basic membrane protein [Borrelia recurrentis A1]
          Length = 336

 Score = 86.7 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 105/331 (31%), Gaps = 37/331 (11%)

Query: 19  YFVLIIFCIVPIVSYKSWAMSSRIRTTIN---GEVITDGDISKRIALLKLQKI---NGEL 72
           +   ++FC++ I S+      +     IN    E+IT  +   ++  LK  +    +   
Sbjct: 4   FLCFLLFCVLGITSFAQ----NTPVVIINLHSNEIITKTEFDSKVNTLKKTQGRDLSNIE 59

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +K  +Q LI + L  QE  K GI    + V            L+ E     ++ QG   N
Sbjct: 60  KKQVLQVLIADVLFGQEALKQGIKVADDEVMQTIRSQFGLASLTDEQIKQMIESQGTNWN 119

Query: 133 HFKQYLAIQSIWPDVV----KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                +        +V    +  F       E E+    +  K   V   + R       
Sbjct: 120 ELLASMKRSLAAQKLVLKIAQPKFSEIKAPSEKEVIEYYEANKTKFVNPDIARISHVFFS 179

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLH---- 243
               +    +++    A++ +         + K+++     V  G   +L   D      
Sbjct: 180 AKDKKRSEVLEQAKDIAKQIKSSKITFEEAVRKYSNDEGSKVKNGDLGFLARGDQSAQNV 239

Query: 244 ---PQFQNLLKKSQNNTTNPYVTQKGVEYIAIC-----------DKRDLGGEIALKAYLS 289
                 + +    + N +NP  +++G   + +            DK      + +K  + 
Sbjct: 240 LGADFIKEVFVLKKGNVSNPISSKEGFHIVKVTEMYSQKFLGLQDKISPNVNMTVKDAIK 299

Query: 290 AQNTPTKIEKHE----AEYVKKLRSNAIIHY 316
                   ++       E   KL  +A I  
Sbjct: 300 NNMINVHQQQIVAKIQQEIYDKLNKSASIQI 330


>gi|160898321|ref|YP_001563903.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Delftia acidovorans
           SPH-1]
 gi|160363905|gb|ABX35518.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Delftia acidovorans
           SPH-1]
          Length = 631

 Score = 86.7 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/406 (9%), Positives = 101/406 (24%), Gaps = 102/406 (25%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK-- 58
           M   +    S F+ +L    ++  F  V + +   +  SS I   ++G  I   D     
Sbjct: 1   MFESIR-KHSKFVMILLFLLIIPSFIFVGV-NQNYFTESSVIVARVDGHEIKQADWENAH 58

Query: 59  RIALLKLQKINGELEKIAVQE----------LIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
           R+   +L+  N  ++   +            ++ + +    ++K  +      +     +
Sbjct: 59  RMESDRLRAENPNIDPKLLDSPQARYATLEKMVRDQVLAAAVQKMHLAASDAQLVRTLQE 118

Query: 109 HAR-------NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
                     +  + AE + + +  QG+    F+  L  +     V+             
Sbjct: 119 IPAIAALKKPDGSMDAEAYRALVGSQGLTPEGFEANLRRELSMNQVMGGVTGTAFATDTQ 178

Query: 152 -----------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRTV----- 183
                                  +  K    E ++ A      +   +    +       
Sbjct: 179 VKQAIDALYQRREVQVARFEASAYASKVQPTEADLKAYYDAHTSQFQQSEQAKVEYLLLD 238

Query: 184 -----------------LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA--- 223
                             ++    +L      +        S+     +  K +  A   
Sbjct: 239 VPSIEAGITLSEDDVRSYYNQNAERLAGPEERRASHILINASKDAPAAEQEKAKAKAEEL 298

Query: 224 --------------------SKIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYV 262
                                     S G   Y     +   F++        + ++   
Sbjct: 299 LAELRKDPKRFAELAKANSQDGGSAASGGDLGYFGRGAMVKPFEDAAFGMKVGDISDVVH 358

Query: 263 TQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
           +  G   I++ D +    +      +  +      ++       +L
Sbjct: 359 SDFGYHIISLVDIK--KPKAPSFEQMRPKLEAELKQQQAQRKFAEL 402


>gi|148381478|ref|YP_001256019.1| foldase protein PrsA [Clostridium botulinum A str. ATCC 3502]
 gi|153933333|ref|YP_001385853.1| peptidylprolyl isomerase [Clostridium botulinum A str. ATCC 19397]
 gi|153935960|ref|YP_001389260.1| peptidylprolyl isomerase [Clostridium botulinum A str. Hall]
 gi|226712001|sp|A7FPK5|PRSA_CLOB1 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|226712002|sp|A5I7R3|PRSA_CLOBH RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|148290962|emb|CAL85098.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
           A str. ATCC 3502]
 gi|152929377|gb|ABS34877.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
           A str. ATCC 19397]
 gi|152931874|gb|ABS37373.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
           A str. Hall]
          Length = 336

 Score = 86.7 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/332 (12%), Positives = 105/332 (31%), Gaps = 21/332 (6%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
             S    + +L     ++ F    +V     A +      +NGE I   D+ +  ++ ++
Sbjct: 1   MKSAKKLLSVLCLGIFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLDESPSMQQV 60

Query: 66  QKING------------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
                                  E +K  ++ LI E +  Q+ ++  +      +N    
Sbjct: 61  LSQIKTQYGEEFEKSEQGKEVIKEQKKQILENLITEKVLLQKGKELKVIPKDEELNKEAD 120

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
           +          +     + + +    F +    + +   +V    + +          + 
Sbjct: 121 KKVNEIKAVYNNDEKKFE-ETLKSTGFTKETLKEYLRDQIVIEKVINEVTKDVKVEDKDA 179

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
           QK  N     +  +    ++    ++ +   +K  K  +             +   SK  
Sbjct: 180 QKYYNENQSMFTEKPNTMNVSHILVKTEDEAKKVKKRLDAKEDFAKVAKEVSQDPGSKDK 239

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALK 285
              +G   Y   +      +  +   +   +NP  TQ G   I +  K++  +    ++K
Sbjct: 240 GGLLGDISYSDSNYDPTFMKAAIALKEGTISNPVHTQWGYHIIKVNSKKEYPVKKFDSVK 299

Query: 286 AYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
             +  Q    K ++   + +++ +  + I  Y
Sbjct: 300 EDIKKQLKQEKQQEAYTKKIEEWKKASKIKTY 331


>gi|254785729|ref|YP_003073158.1| peptidyl-prolyl cis-trans isomerase [Teredinibacter turnerae T7901]
 gi|237683903|gb|ACR11167.1| putative PPIC-type PPIASE domain protein, peptidyl-prolyl cis-trans
           isomerase [Teredinibacter turnerae T7901]
          Length = 624

 Score = 86.7 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/395 (11%), Positives = 111/395 (28%), Gaps = 87/395 (22%)

Query: 1   MTSKVFTSLSDFI-KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKR 59
           M   V  +L   I  ++   F ++   I  + S    +++      ++G  IT  ++S+ 
Sbjct: 3   MLQSVRDNLKGTIVSVIVILFFILPMVITGVGSSFLGSVAGTDAAVVDGRSITKKELSRE 62

Query: 60  IALLKLQ-------------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF 106
           I + K +               +  L +  ++ L  +       EK G+     ++N   
Sbjct: 63  IYMQKQRLLAQQGVDPSADYLKDENLAQPVLERLTRKAAVLAAAEKGGMAVSEKSINGAI 122

Query: 107 ---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN------------- 150
               +   +   S++ + S L + G+    +K   A + +   + K              
Sbjct: 123 VGQEEFKVDGKFSSQQYRSLLARVGLTPAAYKAATAEEMMLGQLNKGLELSSFVTEKEKS 182

Query: 151 --------------------DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                               D        + EI A  Q  +        +      +  N
Sbjct: 183 EIIAIINEKRSFFTVKIPADDLADSIEVTDAEIAAYYQANEAEFREPEKLSVDYIELSVN 242

Query: 191 KLQNQGFVQKRI---------------------------------KDAEESRLRLPKDCN 217
            +     V +                                    + +       +  +
Sbjct: 243 SIAATVTVDEADVRSQYEQEAESFDATPELTVAHILLEEDSSAKLTEVQAKLAAGDEFAD 302

Query: 218 KLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAICDK 275
             + ++         G+   L+       F++  ++  +   + P  T  G  +I +  K
Sbjct: 303 VAKAYSDDAGSRDQGGELGVLVAGAFPEAFESAARELGEGEVSGPVKTDSGTHFIKVLKK 362

Query: 276 R--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
              ++    + KA +       K E      ++KL
Sbjct: 363 DVPEVPSFESRKAAIERSLKVAKAEGIYLSEMEKL 397


>gi|154685453|ref|YP_001420614.1| hypothetical protein RBAM_010190 [Bacillus amyloliquefaciens FZB42]
 gi|154351304|gb|ABS73383.1| PrsA [Bacillus amyloliquefaciens FZB42]
          Length = 283

 Score = 86.7 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/303 (8%), Positives = 86/303 (28%), Gaps = 42/303 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +  I     +      +  + +    +   +T G++   +               
Sbjct: 1   MKKIAIAAITATSVLALSACSSGDNDVIAKTDAGNVTKGELYTNMK--------KTAGAS 52

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            + +L+ E +  ++ + +    D+    Y      + + L  +    +L           
Sbjct: 53  VLTQLVQEKVLAKKYKVTDKEIDTKLKEYKTQLGDQYSSLKQQYGEDYL----------- 101

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
                Q  +  + +          + +       +K      +++               
Sbjct: 102 ---KDQVKYELLAQKAAKDNIKVTDSDTKEYYDGLKGKIRASHIL--------------- 143

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQ 254
              +K   + E+   +  K     +++++     + G   +  +  +   F +       
Sbjct: 144 VADKKTADEVEKKLKKGEKFETLAKEYSTDSSKDNGGDLGWFDKKSMDETFSKAAFGLKV 203

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              ++P  T+ G   I   ++R  G    +K  L  +    K+         ++K+   A
Sbjct: 204 GQVSDPVKTKFGYHIIKKTEER--GKYDDMKKELKEEVLKQKLNDNSAVQAAIQKVMKKA 261

Query: 313 IIH 315
            + 
Sbjct: 262 DVK 264


>gi|114570817|ref|YP_757497.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Maricaulis maris
           MCS10]
 gi|114341279|gb|ABI66559.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Maricaulis maris
           MCS10]
          Length = 317

 Score = 86.7 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/326 (8%), Positives = 71/326 (21%), Gaps = 66/326 (20%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSR---------------IRTTINGEVITDGDIS 57
           + +   + +L++         +    +                 +   +   +I   D+ 
Sbjct: 1   MSVFRVFCILVLTATGTACGPEPRRTADDFESGQPVLSLDEVDPVVARVERTMIRRSDVE 60

Query: 58  KRI------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
           +            +  +        ++ELI + L   E  + G+                
Sbjct: 61  REALAQDGEEASPVPAMGSAEFDRVLEELIDQRLLALEARRRGLHQSEEARRRL------ 114

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
                                        + +   +V+        +  ++    +Q   
Sbjct: 115 ------------------------ALAEERILGNVLVETVIDDAVTDETIQRIYEEQVRL 150

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVS 230
                E   R +L              Q+     +    +           +      + 
Sbjct: 151 IPLGEEVRARHIL-----------VQTQEEAVAIKALIDQGRDFAELAVAMSEDQATRLE 199

Query: 231 IGKAQYLL-ESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS 289
            G   Y   E  L           +   + P+ T+ G   + + D+R           L 
Sbjct: 200 GGDLGYFSREGILPAFGAVAFATPEGAVSEPFRTEFGWHLLTVVDRRRQPP--PSLESLR 257

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAIIH 315
                          +  LR  A I 
Sbjct: 258 PNIARFYTFDQLEALIDGLRDQAEIE 283


>gi|148264478|ref|YP_001231184.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           uraniireducens Rf4]
 gi|146397978|gb|ABQ26611.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           uraniireducens Rf4]
          Length = 299

 Score = 86.7 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/310 (10%), Positives = 74/310 (23%), Gaps = 43/310 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIAL-----LKLQKING 70
           +    +L I   + +         + +   +   V+ + D+ + ++      LK  + + 
Sbjct: 1   MFRNLLLGITISILLAGPALAEEVNPVIGRVGDFVLREADLERLLSYQSPEALKKLQDDP 60

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
                 V++L++         K G                                    
Sbjct: 61  AQRAEIVRQLLLTKAVAARSRKEGFDKKPEVKEEL------------------------- 95

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                 Y+    +    ++          E E+     + +   +     R         
Sbjct: 96  -----GYVIDNYLADQYLRKVVTADVAIPEEELKKYYAEHEKDFLISQSARVRHIYFEAA 150

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLE----KFASKIHDVSIGKAQYLLESDLH--P 244
           K       +K    AE    +L +  +                  G    L     +   
Sbjct: 151 KDATPEVKEKAKAKAEAILKQLKEGADFAAVARASSEDADSASKGGDLGVLSPGKTNSKE 210

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEA 302
             +         T+    T  G   I + ++ D         K Y+         +K   
Sbjct: 211 FEKAAFALKAGETSPVVETPFGYHIIRVDERTDQRTASFDEAKDYIRTTLKGQFEQKKAR 270

Query: 303 EYVKKLRSNA 312
           E++ KL   A
Sbjct: 271 EFLDKLAKEA 280


>gi|253567245|ref|ZP_04844695.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_2_5]
 gi|251944076|gb|EES84595.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_2_5]
          Length = 456

 Score = 86.7 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/313 (10%), Positives = 97/313 (30%), Gaps = 17/313 (5%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKR--IALLKLQ 66
           +  F+       +  +  +  + SY    +   +   I  E I   D+ +    AL + +
Sbjct: 1   MKKFVN-FKFVVMFALALVANVASYAQDNVIDEVVWVIGDEAILKSDVEEARLAALYEGR 59

Query: 67  KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
           K +G+   +  +EL V+ L   +     I      V         N   +        + 
Sbjct: 60  KFDGDPYCVIPEELAVQKLYMHQAVLDSIEVPEAEVIQRVDYQINNYIQAMGTREKLEEY 119

Query: 127 QGIGDNHFKQYLAIQS---IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                   ++ +   +   +    ++   +        E+    +++   ++     +  
Sbjct: 120 FNKTSTQIREAMRENARDGLIVQRMQQKLVGDIKVTPAEVRRYFKELPQDSIPYVPTQVE 179

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-----SKIHDVSIGKAQYLL 238
           +  I          ++   +   E   R+ K  +     A      +   +  G+  ++ 
Sbjct: 180 VQIITQQPKIPVAEIEDVKRRLREYTDRINKGESDFSTLALLYSEDRGSAIKGGETGFMG 239

Query: 239 ESDLHPQFQNLLKKSQN--NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNT-PT 295
           +  + P++ N+    Q+    +    ++ G   I + +KR   G+     ++  +     
Sbjct: 240 KGQMVPEYANVAFNLQDTKKISKIVESEYGFHIIQLIEKR---GDRINTRHILLKPKVSD 296

Query: 296 KIEKHEAEYVKKL 308
           K        +  +
Sbjct: 297 KELDEANARLDSI 309


>gi|300728335|ref|ZP_07061700.1| peptidyl-prolyl cis-trans isomerase family protein [Prevotella
           bryantii B14]
 gi|299774400|gb|EFI71027.1| peptidyl-prolyl cis-trans isomerase family protein [Prevotella
           bryantii B14]
          Length = 486

 Score = 86.7 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/252 (10%), Positives = 73/252 (28%), Gaps = 12/252 (4%)

Query: 37  AMSSRIRTTINGEVITDGDISKRIALLKLQ--KINGELEKIAVQELIVETLKKQEIEKSG 94
           ++   +   +  E I   D+       + +  K  G+ +    ++L ++ L   +     
Sbjct: 59  SIIDEVIWVVGDEPILKSDVEMMRMQGEAEGVKFQGDPDCSIPEQLAIQKLFLHQAAIDS 118

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND--- 151
           I    + V+                     + + +     +Q +        +++ +   
Sbjct: 119 IEVTESEVSQGIDDQINYWIQLIGSREKLEEYRKMTITQIRQQMHDDFKNQQLIRKEREE 178

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
            +        ++ A  + +   ++        +  I      ++   ++  +   +   R
Sbjct: 179 LVKDIKVTPAQVRAYFKNLPEDSIPFVPTEVEVQVITRQPKISKDETERIKEQLRDFTKR 238

Query: 212 LPKDCNKLEKFASKIH-----DVSIGKAQYLLESDLHPQFQNLLKKSQN--NTTNPYVTQ 264
           +          A             G+  Y+    L P F N+     +    +    T+
Sbjct: 239 VNDGETSFSTLARLYSEDPGSARQGGELGYIGRGMLDPAFANVAFNLTDPKKISKIVETE 298

Query: 265 KGVEYIAICDKR 276
            G   I + DKR
Sbjct: 299 FGFHIIQLIDKR 310


>gi|300779152|ref|ZP_07089010.1| peptidyl-prolyl cis-trans isomerase [Chryseobacterium gleum ATCC
           35910]
 gi|300504662|gb|EFK35802.1| peptidyl-prolyl cis-trans isomerase [Chryseobacterium gleum ATCC
           35910]
          Length = 455

 Score = 86.7 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/310 (12%), Positives = 98/310 (31%), Gaps = 16/310 (5%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMS-----SRIRTTINGEVITDGDISKRIALLKLQKI 68
             L   F+L IF ++   +  +  +        I   I  E++ + D+ +++   K Q  
Sbjct: 3   NKLKITFLLGIFIMIFSSNMMNAQLKQGDLVDGIAAVIGDEIVLESDVIEQMNYGKQQGA 62

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDS-----NTVNYFFVQHARNTGLSAEDFSSF 123
               +   ++ LI   L   E +K  +  +         N  + Q            +++
Sbjct: 63  ANTDKCEFLENLISNKLLVYEAKKDTLIENRSAAIKEQANAKYRQLLSQFPDEKTLLAAY 122

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV--REYLIR 181
             +      +  + +     +          K      E+       K      ++ +  
Sbjct: 123 KFRNAYEMKNAIEKIDTDQYYGQAKYQRVTDKADVTPNEVTDFYNMYKTQLPQVKDEVTL 182

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLES 240
             +   P     ++  +  R+K  ++  L      ++   ++       + G  + + + 
Sbjct: 183 AQIMIYPSLTEAHKQDLINRLKKIKQDILAGETFESQARIYSEDEGSAANGGLYKNINKG 242

Query: 241 DLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
            +   F+       +N  ++P  ++ G   I +  KR      A    L A  T  +I K
Sbjct: 243 QMVKPFEAAALNLQENEISDPVESEFGFHIIQLV-KRSGKVYDARHILLKATPTDEEI-K 300

Query: 300 HEAEYVKKLR 309
                +  +R
Sbjct: 301 TAKAKLDSIR 310


>gi|319763570|ref|YP_004127507.1| ppic-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
           denitrificans BC]
 gi|330824229|ref|YP_004387532.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
           denitrificans K601]
 gi|317118131|gb|ADV00620.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
           denitrificans BC]
 gi|329309601|gb|AEB84016.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
           denitrificans K601]
          Length = 640

 Score = 86.7 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/405 (8%), Positives = 96/405 (23%), Gaps = 102/405 (25%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK-- 58
           M   +       + LL    ++  F +V I     +   S +   ++G+ IT  D     
Sbjct: 1   MLESIRKHTKWVMGLLFL-LIIPSFILVGID-RNYFGGGSPVVARVDGKDITQADWDNAH 58

Query: 59  RIALLKLQKI----------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
           R+   +++            + +     ++ L+ + + +   +K  +      +      
Sbjct: 59  RMESDRIRAQSPGIDAKLLDSPQARYATLERLVRDRVLQVAAQKMHMLTSDARLARELQS 118

Query: 109 HAR-------NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
             +       +  L AE + +    QG+     +  +        V+ +           
Sbjct: 119 IPQIAALKRPDGTLDAEAYRALAGAQGLTPEGLEARVRHDISVSQVMGSVVASAFAGPAE 178

Query: 152 -----------------------FMLKYGNLEMEIPANKQKMKNITVR------------ 176
                                  F+ K    + ++ A  +       +            
Sbjct: 179 SKLALDALFQRREIQVARFDPSAFVSKVAVTDADLEAYYKAHLAKFQQPEQATVEYVVLD 238

Query: 177 -----------------EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK- 218
                             Y       S  + +  +   V          R +      + 
Sbjct: 239 LDAVKAGITLNEDDLRTYYKENLSRLSGKEERRASHILVNAAKDAPAAEREKAKAKAQEL 298

Query: 219 ----------LEKFASKIHDVSI-----GKAQYLLESDLHPQFQNLLKK-SQNNTTNPYV 262
                       + A K    +      G   +     +   F++ +    +   ++   
Sbjct: 299 LAEVRKAPGRFAEIARKESQDTGSAASGGDLGFFGHGAMVKPFEDAVFSLKKGEISDVVE 358

Query: 263 TQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
           T  G   I + D +           L         ++       +
Sbjct: 359 TDFGYHVIMLTDVK--TPRQPSFEELRPSLEAELRQQQAQRKFAE 401


>gi|94967188|ref|YP_589236.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94549238|gb|ABF39162.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 317

 Score = 86.7 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/306 (16%), Positives = 100/306 (32%), Gaps = 34/306 (11%)

Query: 44  TTINGEVITDGDISKRIALLKLQKINGELEKIA-------VQELIVETLKKQEIEKSGIT 96
             +NG  IT  ++ K              ++ A       ++ELI   +  Q  EK G+ 
Sbjct: 2   ARVNGHKITRPEVEKYYKNQIAGSPQQPSDEQADNLRLNILRELINNEILMQRAEKLGLL 61

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
                V+     +A     S E F + L ++GI  + F++ L        V+  +   K 
Sbjct: 62  ATDEEVDSKV--NAAKAPYSQEQFDARLKERGITMDDFRRDLRRSITIDKVINKEITSKI 119

Query: 157 GNLEMEIPANKQKMKNIT---VREYLIRTVLFSIPDNKL-------QNQGFVQKRIKDAE 206
              + +I +     K        +Y +  +L +   N          N    +K+I+   
Sbjct: 120 NVSDGDISSYYNAHKAEFNLIEPQYHMAQILVTPQPNPQVKNLQKANNDAEAKKKIQQLV 179

Query: 207 ESRLRLPKDCNKLEKFASKIH-DVSIGKAQYLLESDLHPQ---FQNLLKKSQNNTTN--P 260
                     +    ++ +     + G   ++ ES L      F  + +      T   P
Sbjct: 180 NRLDSGEDFASVAMNYSEQPEISPNGGDLGFIPESSLKGDKLAFDAVARLKPGQYTGVLP 239

Query: 261 YVTQK-----GVEYIAICDKRDLG----GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            V        G   + +  K   G     +  ++  +  Q    + +  +A Y + +R  
Sbjct: 240 IVDPSNKQVLGYRILKLIAKESSGQRELNDPRVQQAIREQLRDGREQLLKAAYYESVRDK 299

Query: 312 AIIHYY 317
           + +  Y
Sbjct: 300 SSVENY 305


>gi|71908519|ref|YP_286106.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas
           aromatica RCB]
 gi|71848140|gb|AAZ47636.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas
           aromatica RCB]
          Length = 263

 Score = 86.7 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 83/299 (27%), Gaps = 47/299 (15%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--ELEKIAV 77
              ++     + +    A  ++   T+NG+ I+    +  IA  + Q      EL+    
Sbjct: 7   LAALLVAGAIVSAPALAADKAKAFATVNGQPISQTVYNAFIAEQQAQGAPDSPELQGAVK 66

Query: 78  QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY 137
           +EL+   +  QE +K G+    N                                   + 
Sbjct: 67  EELVRREILAQEAKKKGLDKAPNVQGQI------------------------------EL 96

Query: 138 LAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGF 197
                +    + +       +        +    N+   EY  R VL    D+       
Sbjct: 97  AKQAVLIRAYLSDYVKAHPISDAQLKAEYELIKNNLGSTEYKARHVLVEKEDDAKAIIAK 156

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNN 256
           + K             K     ++          G+  +   +     F + L K  +  
Sbjct: 157 LDK-----------GEKFSELAKQSKDPGSKDKGGELGWSSPNAYVKPFGEALGKLKKGE 205

Query: 257 TTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            T  P  +  G   I + D R +         +  Q      ++     VK+LR  A +
Sbjct: 206 YTKTPVKSDFGYHVIQLDDSRPMTP--PPFDQVKPQLQQRAGQQQVENLVKELRGKAKV 262


>gi|196037443|ref|ZP_03104754.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus NVH0597-99]
 gi|196031685|gb|EDX70281.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus NVH0597-99]
          Length = 285

 Score = 86.7 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/304 (11%), Positives = 80/304 (26%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + +++      SS    T     IT  D  K+   LK +     L ++ 
Sbjct: 4   KHIFIITALISILMLAACGQKNSSATVATATDSTITKSDFEKQ---LKDRYGKDMLYEMM 60

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
            Q++I +  K             + V     +     G        F           + 
Sbjct: 61  AQDVITKKYK----------VSDDDVEKEVQKVKNQYG------DQFTAVLENNRLKDEA 104

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 105 DFKKQIKFKLAMNEAIKKSVTEKDVKA--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ ++            ++ +  +      G   Y     + P+F+    K   
Sbjct: 145 SDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYKLKV 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              +NP  +  G   I + DK++L     +K  +       +I       + ++K    A
Sbjct: 205 GQISNPVKSPNGYHIIKLTDKKELKPYDEVKDSIRKNLEEERIADPTFSHKLLQKELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|148880128|sp|Q68WG0|PLP_RICTY RecName: Full=Parvulin-like PPIase; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase plp; AltName: Full=Rotamase plp;
           Flags: Precursor
          Length = 282

 Score = 86.7 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 82/301 (27%), Gaps = 38/301 (12%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           + +IF  V ++S  ++    ++  T  G  + +  I +        +    ++       
Sbjct: 4   LSVIFLSVSMLSSIAFCDQDKVVATYKGGEVKESQIMQEFKPQLNLQSGETIKN------ 57

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
                                     ++   N  L  E+ +              +    
Sbjct: 58  --------------FDDFPLQDQEKLIKIYVNNLLLKEEVAKSSITSSKEFQEKLENAKN 103

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           Q    +++ N       +   +   NK         +  +  +L              QK
Sbjct: 104 QLAQQELLANYIKSNITDKMFDDEYNKYVDNLKGKEQIKVAHIL-----------VKSQK 152

Query: 201 RIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYL---LESDLHPQFQNLLKK-SQN 255
                +    +        E+F+  K    + G   Y+       L P+F+N       N
Sbjct: 153 EANTVKTKLSKGGNFNKLAEEFSLDKATASNGGVIGYIILNQSGQLVPEFENKAFALKVN 212

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             + P  T  G   I + +K+ +   I  K             +   +Y+  L + A + 
Sbjct: 213 EVSTPVKTDFGWHIIKVLEKKPVP--IPTKKEAKVTIDNILAAEILKKYISDLEAKADLK 270

Query: 316 Y 316
            
Sbjct: 271 I 271


>gi|296117344|ref|ZP_06835934.1| peptidylprolyl isomerase [Gluconacetobacter hansenii ATCC 23769]
 gi|295976110|gb|EFG82898.1| peptidylprolyl isomerase [Gluconacetobacter hansenii ATCC 23769]
          Length = 308

 Score = 86.3 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 82/276 (29%), Gaps = 50/276 (18%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKIN---GELEKIAVQELIVETLKKQEIEKSGITFDS 99
             ++NG+ I   DI + IA +  Q        +  I + +L+ +   +   EKSG+    
Sbjct: 50  LASVNGQDIRLNDIRQAIATMPDQLRKLPENVIIPILLNQLVDQKAIQIVAEKSGLAKQP 109

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
           +  +                                +  A  ++    + +       + 
Sbjct: 110 DVQHQ------------------------------MEVAAQNALQNAYLSSQVTPGLTDD 139

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
            ++   +K         E   R +L              +++  D  +         +  
Sbjct: 140 AVKAYYDKNYANKPGAEEIHARHILVP-----------TEEQANDIIKQLKGGANFADLA 188

Query: 220 EKFASKIH--DVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTN-PYVTQKGVEYIAICDK 275
            K +        + G   +  + D+    +        N+ +  P  TQ G   I +  K
Sbjct: 189 TKLSKDPGSAKQNGGDLGWFKKGDMLPAFWDAASTLQPNSFSQTPVHTQYGWHVIQVLGK 248

Query: 276 RDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
           R        +++  +  +     ++K  +  V +++
Sbjct: 249 RTAATPTLDSMRDQIRQKLIQEGVQKAVSSAVGQVK 284


>gi|114768927|ref|ZP_01446553.1| Probable PpiC-type peptidyl-prolyl cis-trans isomerase [alpha
           proteobacterium HTCC2255]
 gi|114549844|gb|EAU52725.1| Probable PpiC-type peptidyl-prolyl cis-trans isomerase [alpha
           proteobacterium HTCC2255]
          Length = 297

 Score = 86.3 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 52/305 (17%), Positives = 116/305 (38%), Gaps = 11/305 (3%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
           FIK++T   +L  F      +      + ++   +N ++IT+ +IS+RI +L++      
Sbjct: 3   FIKIMTAILLLSPF-----TAMAQSTNTFKVAVEVNDQIITNYEISQRIKMLEIFGAKSV 57

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
            +K  +  LI E L      + G   +++ ++      A+   L+ +D  ++LD + +  
Sbjct: 58  SKKEVINSLINERLYTYSANELGALPNNSEIDKGLDDFAKRGNLNKKDLLAYLDTRNVSQ 117

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                Y+        V++  F+      + ++ +       ++   + I   +     N 
Sbjct: 118 ETLLAYITSGLTQRKVIQKKFVNNIIISQSDVASAIDLEGLLSKDNFNIVEYIEIKFLNL 177

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
           L +     K+      +  ++  +C  L+    K  ++S+        +DL     N L 
Sbjct: 178 LSD-----KKSLKYLNTINKMVDNCLDLQSEVKKYENISL-IVHKKRSNDLQKNILNELN 231

Query: 252 KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
               N T      K   Y+ +   R+   +      L  +    +I K    Y++KL+  
Sbjct: 232 NLDINETKVVKNLKNEHYLLMLCSRNSEMDKNTIETLRNKIFNNRINKIGKAYIQKLKGE 291

Query: 312 AIIHY 316
           A +  
Sbjct: 292 AFVDI 296


>gi|16759432|ref|NP_455049.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29142796|ref|NP_806138.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213160790|ref|ZP_03346500.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213425852|ref|ZP_03358602.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. E02-1180]
 gi|213646001|ref|ZP_03376054.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|213850134|ref|ZP_03381032.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
 gi|289829271|ref|ZP_06546883.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|25320965|pir||AG0558 peptidylprolyl isomerase (EC 5.2.1.8) - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16501723|emb|CAD08911.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138428|gb|AAO69998.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 623

 Score = 86.3 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/396 (9%), Positives = 102/396 (25%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     S+     +NG+ I+        
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL-IGGSNNYAAKVNGQEISRAQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                             +++ +++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNNRYNAIVNQMGMTADQYTQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                N    K    + E+ +   + K   +     R     + 
Sbjct: 180 TDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                             +  +        
Sbjct: 240 AATMQAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFATLA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ES   P+ +N   K +   +    +  G     + D +  
Sbjct: 300 KEKSTDIISARNGGDMGWLEESATVPELKNAGLKEKGQISGVIKSSVGFLVARLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDAA 395


>gi|203284033|ref|YP_002221773.1| basic membrane protein [Borrelia duttonii Ly]
 gi|201083476|gb|ACH93067.1| basic membrane protein [Borrelia duttonii Ly]
          Length = 336

 Score = 86.3 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 105/331 (31%), Gaps = 37/331 (11%)

Query: 19  YFVLIIFCIVPIVSYKSWAMSSRIRTTIN---GEVITDGDISKRIALLKLQKI---NGEL 72
           +   ++FC++ I S+      +     IN    E+IT  +   ++  LK  +    +   
Sbjct: 4   FLCFLLFCVLGITSFAQ----NTPVVIINLHSNEIITKTEFESKVNTLKKTQGRDLSNIE 59

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +K  +Q LI + L  QE  K GI    + V            L+ E     ++ QG   N
Sbjct: 60  KKQVLQVLIADVLFGQEALKQGIKVADDEVMQTIRSQFGLASLTDEQIKQMIESQGTNWN 119

Query: 133 HFKQYLAIQSIWPDVV----KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                +        +V    +  F       E E+    +  K   V   + R       
Sbjct: 120 ELLASMKRSLAAQKLVLKIAQPKFSEIKAPSEKEVIEYYEANKTKFVNPDIARISHVFFS 179

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLH---- 243
               +    +++    A++ +         + K+++     V  G   +L   D      
Sbjct: 180 AKDKKRSEVLEQAKDIAKQIKSSKITFEEAVRKYSNDEGSKVKNGDLGFLARGDQSAQNV 239

Query: 244 ---PQFQNLLKKSQNNTTNPYVTQKGVEYIAIC-----------DKRDLGGEIALKAYLS 289
                 + +    + N +NP  +++G   + +            DK      + +K  + 
Sbjct: 240 LGADFIKEVFVLKKGNVSNPISSKEGFHIVKVTEMYSQKFLGLQDKISPNVNMTVKDAIK 299

Query: 290 AQNTPTKIEKHE----AEYVKKLRSNAIIHY 316
                   ++       E   KL  +A I  
Sbjct: 300 NNMINVHQQQIVAKIQQEIYDKLNKSASIQI 330


>gi|312888862|ref|ZP_07748425.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mucilaginibacter
           paludis DSM 18603]
 gi|311298737|gb|EFQ75843.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mucilaginibacter
           paludis DSM 18603]
          Length = 457

 Score = 86.3 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 83/291 (28%), Gaps = 21/291 (7%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--LEKIAVQELIVETLKKQEIE 91
                  +I   +   +I   DI  + A   +Q       ++ + +Q+L+ + L  Q+  
Sbjct: 20  AQKKTLDKIAGVVGSGIILQSDIESQYAQYLIQGNPPNPSIKCLILQQLLTQKLLAQQAV 79

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV---V 148
              +    + V+    +  R+    A          G     +K  L        V   +
Sbjct: 80  IDSVFVKDDEVDAEVDRRMRSMVQRAGGEERLEQFLGRSIIQYKDELRPDIKEQRVAEKM 139

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
           +     K      +I      +   ++  Y     +  I           ++    AE  
Sbjct: 140 RQKITEKVNVTPFDIKKYFDAIPKDSLPTYNKEVEVGEISITPKLTAEEKKQFKDKAESL 199

Query: 209 RLR---LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVT 263
           R R        N    ++         G   +   S    +F  +  K      +  + T
Sbjct: 200 RARVKGGEDFGNLARLYSQDPGSSPDGGDLGFADRSTFVKEFAAMAFKLKAGEISPVFET 259

Query: 264 QKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             G  ++ + ++R          ++      T++ +   +     R+   I
Sbjct: 260 DFGFHFLQVIERRGEQV------HVRHILIKTEVSQGSLD-----RAKVKI 299



 Score = 38.9 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 34/302 (11%), Positives = 77/302 (25%), Gaps = 23/302 (7%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSG 94
           +  M  +I   +N   +T  DI K    +    +    +++ V E+ +      E +K  
Sbjct: 136 AEKMRQKITEKVN---VTPFDIKKYFDAIPKDSLPTYNKEVEVGEISITPKLTAEEKKQF 192

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
                +                           G       +   ++       K     
Sbjct: 193 KDKAESLRARVKGGEDFGNLARLYSQDPGSSPDGGDLGFADRSTFVKEFAAMAFKLKAGE 252

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
                E +   +  ++      +  +R +L     ++        K              
Sbjct: 253 ISPVFETDFGFHFLQVIERRGEQVHVRHILIKTEVSQGSLDRAKVKIDSVYTLLSGNKKI 312

Query: 215 DCNKLEKFASKI--HDVSIGKA----------QYLLESDLHPQFQ-NLLKKSQNNTTNP- 260
           D +    + S       + G             Y+    L PQ    +        + P 
Sbjct: 313 DFSSAAAYYSDDRDTKYNGGMMLNADNVQSRTTYIPTDKLDPQVALVVDTMKIGEISKPA 372

Query: 261 -YVTQKG---VEYIAICDKRDLGGEIALKA--YLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            +  Q G    + + +  K D       +    +       K+ K  +E+ +K R +  +
Sbjct: 373 LFTAQDGKKTYKILLLKSKTDAHKANLAQDLPKIKDLAYEDKLNKSVSEWFEKKRKDTYV 432

Query: 315 HY 316
             
Sbjct: 433 KI 434


>gi|241663130|ref|YP_002981490.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
           12D]
 gi|240865157|gb|ACS62818.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
           12D]
          Length = 646

 Score = 86.3 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 48/408 (11%), Positives = 106/408 (25%), Gaps = 103/408 (25%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   V T     + L+    V   F    + SY S+  SS     ++G+VI+  ++  R+
Sbjct: 1   MLDFVRTH-RRLMFLVLLILVFPSFVFFGVQSYSSFMDSSHDAAKVDGKVISTNEVDARV 59

Query: 61  -------------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
                             Q    ++ +  +  +I + +   E+ ++ +T  +  +    +
Sbjct: 60  REQTERLRQMLGAQYDPRQFEGPQMRRDVLDGIIQQRVLANEVTRANLTISNEKIRDTIL 119

Query: 108 Q-------HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK----------- 149
           Q          +     E +   L  Q +     +  L  +     + +           
Sbjct: 120 QIPAVAALRKPDGSFDQEAYVRLLSAQNMTPEQLEGNLRFELSQQQIPQSIVSSAFVPKS 179

Query: 150 ----------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
                                  D+  K    +  I A     +        ++      
Sbjct: 180 LVDRLIQVRDQQREVQALLFKPADYAAKVNADDKAIQAYYDAHQQEFSVPEQVKAEYVVF 239

Query: 188 PDNKLQNQG----FVQKRIKDAEESRLRLPKDCNKL------------------------ 219
              ++  Q        K   D   +R +  ++                            
Sbjct: 240 SGEEMMKQIPVTPEQIKEYYDQNAARFKTQEERRAAHILIKLPDNAKPADKEAAKKKAEE 299

Query: 220 ------------EKFASKIHDVSI-----GKAQYLLESDLHPQFQNLLK--KSQNNTTNP 260
                          A K           G+  +L +    P F+N L   K   + ++ 
Sbjct: 300 VLAEVRKNPASFADLAKKYSGDPGSAAQGGELGFLGKGATVPPFENALFALKQPGDISDV 359

Query: 261 YVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
             +  G   I + + +   +    A+K  L  +       K  +E   
Sbjct: 360 VQSDFGFHIIKLEEVKGGGVQPLEAVKPELERELRTQLANKKYSELAD 407


>gi|291515480|emb|CBK64690.1| Parvulin-like peptidyl-prolyl isomerase [Alistipes shahii WAL 8301]
          Length = 463

 Score = 86.3 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/256 (11%), Positives = 75/256 (29%), Gaps = 15/256 (5%)

Query: 36  WAMSSRIRTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQE 89
             M  ++   + G  I   ++      L  Q+         +    A++ L+ + L   +
Sbjct: 19  QVMLDKVVAVVGGSSILYSEVDDYARQLTEQRRQEGYTSDRDPMNEALEALMTQKLLYNQ 78

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV-- 147
            +   +  +   +     +  +    +         K  +   + ++ +  +        
Sbjct: 79  AQIDSVKVNDADIMARVEEQVQQMVEAEGSIPQLEAKHHMPIFNIREIMRQRYEEQAYAN 138

Query: 148 -VKNDFMLKYGNLEMEIPANKQKMKNIT----VREYLIRTVLFSIPDNKLQNQGFVQKRI 202
            ++ + + K   +  E+    + +   +      +Y+   +           Q   ++ I
Sbjct: 139 SMQTEVVDKVSVIPGEVERFYKSISKDSLPLVADQYVYAQITKFPKSMTAAKQRTRERLI 198

Query: 203 KDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNP 260
              E       K  N    ++      +  G+        L P F   L K      +  
Sbjct: 199 DMRERVITGKAKFENLARMYSQDPGTMMRGGEMDPSTLEQLDPAFGAALEKMRPGQISEV 258

Query: 261 YVTQKGVEYIAICDKR 276
             +Q G   I + DKR
Sbjct: 259 VESQFGFHIIQLLDKR 274


>gi|197248545|ref|YP_002145433.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197212248|gb|ACH49645.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 623

 Score = 86.3 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/396 (9%), Positives = 102/396 (25%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     S+     +NG+ I+        
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL-IGGSNNYAAKVNGQEISRAQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                             +++ +++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                N    K    + E+ +   + K   +     R     + 
Sbjct: 180 TDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                             +  +        
Sbjct: 240 AATMQAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFATLA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ES   P+ +N   K +   +    +  G     + D +  
Sbjct: 300 KEKSTDIISARNGGDMGWLEESATVPELKNAGLKEKGQISGVIKSSVGFLVARLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDAA 395


>gi|324325280|gb|ADY20540.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 285

 Score = 86.3 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/304 (9%), Positives = 76/304 (25%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + ++S       S    T     IT  D  K++             K  
Sbjct: 4   KHIFIITALLSILMLSACGQKNDSDTVATATDSTITKSDFEKQLK--------DRYGKDM 55

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           + E++ + +  ++ + S    D            +   +   +                 
Sbjct: 56  LYEMMAQDVITKKYKVSDDDVDKELQKAKNQYGDQFKNVLKNNGLKDEADF--------- 106

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 107 --KNQIKFKLAMNEAIKKSITEKDVKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ ++            ++ +  +      G   Y     + P+F+    K   
Sbjct: 145 SDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYKLKV 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              +NP  +  G   I + DK++L     +K  +       +I       + ++     A
Sbjct: 205 GQISNPVTSPNGYHIIKLTDKKELKPYDEVKDSIRKNLEEERISDPIFGKKLLQDELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|163848456|ref|YP_001636500.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222526384|ref|YP_002570855.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus sp.
           Y-400-fl]
 gi|163669745|gb|ABY36111.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222450263|gb|ACM54529.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus sp.
           Y-400-fl]
          Length = 321

 Score = 86.3 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 80/296 (27%), Gaps = 40/296 (13%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKK 87
               S    A    I   +  E I   D  +         + G   +  + ++I   L  
Sbjct: 49  AGGTSGTVPAPDDAI-ARVGEEFILRRDFDR-------LYLPGADPQNLIDQMIDVELVV 100

Query: 88  QEIEKSGITFDSNTVNYFFVQH--ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
           Q     G T D  T++    Q   A+  G  A+  +   D     +   ++ L    +  
Sbjct: 101 QAALAEGATVDEATIDSQVEQLRLAQAGGDEAQFLTFLQDNNIADEEELRRLLRRDYLIE 160

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
            ++                     +K+ T  +   R +L +    + +++    + I   
Sbjct: 161 QML---------------------LKHTTAEQVRARHILVAATPEEAESRKATAEAI--- 196

Query: 206 EESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQ 264
                            +         G   +         F+  +   Q        T 
Sbjct: 197 LAELQGGADFAALARARSDDPGSAAQGGDLGWAPRGVYVEPFEEAVFSMQPGELRLVQTD 256

Query: 265 KGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA----IIHY 316
            G   I + +  ++      +A L  Q            +V +LRS+A     I  
Sbjct: 257 FGWHIIEVTEGPEVRSFTD-RALLETQAGQEAFSATFLPWVAELRSSAEAAGKIEI 311


>gi|296332416|ref|ZP_06874877.1| molecular chaperone lipoprotein [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305673697|ref|YP_003865369.1| molecular chaperone lipoprotein [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150334|gb|EFG91222.1| molecular chaperone lipoprotein [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305411941|gb|ADM37060.1| molecular chaperone lipoprotein [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 284

 Score = 86.3 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/303 (10%), Positives = 90/303 (29%), Gaps = 43/303 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSR-IRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
                +       I++  + +   + +    +   +T G++   +               
Sbjct: 1   MKKIAIAAITATSILALSACSSGDKEVIAKTDAGDVTKGELYTNMK--------KTAGAS 52

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            + +L+ E +                 +       +       D  + L++Q   D    
Sbjct: 53  VLTQLVQEKVL---------DKKYKVTDKEIDNKLKEYKTQLGDQYTALEEQYGKDY--- 100

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             L  Q  +  + +          + +     + +K+     ++                
Sbjct: 101 --LKEQVKYELLTQKAAKDNIKVTDADTKEYWEGLKDKIRASHI---------------L 143

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQ 254
              +K  ++ E+   +  K  +  +++++       G   +  +  +  +F +   K   
Sbjct: 144 VADKKTAEEVEKKLKKGEKFEDLAKEYSTDNSASQGGDLGWFAKDGMVAEFSKAAFKLKT 203

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              ++P  TQ G   I   ++R  G    +K  L ++    K+       E V+K+   A
Sbjct: 204 GEVSDPVKTQYGYHIIKKTEER--GKYDDMKKELKSEVLEQKLNDTTAVQEAVQKVMKKA 261

Query: 313 IIH 315
            + 
Sbjct: 262 DVE 264


>gi|229120788|ref|ZP_04250031.1| Foldase protein prsA 2 [Bacillus cereus 95/8201]
 gi|228662793|gb|EEL18390.1| Foldase protein prsA 2 [Bacillus cereus 95/8201]
          Length = 285

 Score = 86.3 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/304 (10%), Positives = 77/304 (25%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + +++      SS    T     IT  D  K++             K  
Sbjct: 4   KHIFIITALISILMLAACGQKNSSATVATATDSTITKSDFEKQLK--------DRYGKDM 55

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           + E+I + +  ++ + S    D            +   +   +                 
Sbjct: 56  LYEMIAQDVITKKYKVSDDDVDKEVQKAKSQYGDQFKNVLKNNGLKDEADF--------- 106

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 107 --KNQIKFKLSMNKAIKQSVTEKDVKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ ++            ++ +  +      G   Y     + P+F+    K   
Sbjct: 145 SDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYKLKI 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              +NP  +  G   I + DK++L     +K  +       +I       + ++     A
Sbjct: 205 GQISNPVKSPNGYHIIKLTDKKELKPYDEVKDSIRKNLEEERITDPIFGKKLLQSELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|15966379|ref|NP_386732.1| hypothetical protein SMc02451 [Sinorhizobium meliloti 1021]
 gi|307313034|ref|ZP_07592661.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sinorhizobium
           meliloti BL225C]
 gi|307321040|ref|ZP_07600446.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sinorhizobium
           meliloti AK83]
 gi|15075650|emb|CAC47205.1| Conserved hypothetical protein, contains a peptidyl-prolyl
           cis-trans isomerase signature [Sinorhizobium meliloti
           1021]
 gi|306893315|gb|EFN24095.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sinorhizobium
           meliloti AK83]
 gi|306899353|gb|EFN29987.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sinorhizobium
           meliloti BL225C]
          Length = 284

 Score = 86.3 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 75/290 (25%), Gaps = 48/290 (16%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ---KINGELEKIAVQELIVETLKKQ 88
                  +  +   +  + I   ++   I  L  Q     + +    A+  +I   L  +
Sbjct: 19  GVARAEGTDPVIAKVGDQEIRQSELDLAITSLDPQLQRMPDEQKRAAALSAVIDVKLLLK 78

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
           + EK G+                              +          +L  + +     
Sbjct: 79  DAEKEGL------------------------------QNDEAFKQRVAFLTERELHNAFF 108

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
           K   +    + E++   +K+        E   R +L    D        +          
Sbjct: 109 KKHVVDAVTSEEVKARYDKEVAAIPPQEEVKARHILVKTEDEAKDVIKELDA-------- 160

Query: 209 RLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKG 266
                   +  +  ++  +    G   Y  +  + P+F+       +   T  P  TQ G
Sbjct: 161 ---GKNFADLAKAKSTDPNKEEGGDLGYFTKGRMVPEFETAAFALEKGAYTKTPVKTQFG 217

Query: 267 VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
              I I DKR           +  Q     +     E +   + +  +  
Sbjct: 218 FHVILIEDKRPQAP--PTLEQVEPQVRQLVMRDKYLELLNSAKESTAVEI 265


>gi|187928946|ref|YP_001899433.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
           12J]
 gi|187725836|gb|ACD27001.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
           12J]
          Length = 646

 Score = 86.3 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 48/408 (11%), Positives = 107/408 (26%), Gaps = 103/408 (25%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   V T     + L+    V   F    + SY S+  SS     ++G+VI+  ++  R+
Sbjct: 1   MLDFVRTH-RRLMFLVLLILVFPSFVFFGVQSYSSFMDSSHDAAKVDGKVISTNEVDARV 59

Query: 61  -------------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
                             Q    ++ +  +  +I + +   E+ ++ +T  +  +    +
Sbjct: 60  REQTERLRQMLGAQYDPRQFEGPQMRRDVLDGIIQQRVLANEVVRANLTISNEKIRDTIL 119

Query: 108 Q-------HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK----------- 149
           Q          +     E +   L  Q +     +  L  +     + +           
Sbjct: 120 QIPAVAALRKPDGSFDQEAYVRLLSAQNMTPEQLEGNLRFELSQQQIPQSIVSSAFVPKS 179

Query: 150 ----------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
                                  D+  K    +  I A     +        ++      
Sbjct: 180 LVERLIQVRDQQREVQTLLFKPADYAAKVNADDKAIQAYYDAHQQEFSVPEQVKAEYVVF 239

Query: 188 PDNKLQNQG----FVQKRIKDAEESRLRLPKDCNKL------------------------ 219
              ++  Q        K   D   +R +  ++                            
Sbjct: 240 SGEEMMKQIPVTPEQIKEYYDQNAARFKTQEERRAAHILIKLPDNAKPADKEAAKKKAEE 299

Query: 220 ------------EKFASKIHDVSI-----GKAQYLLESDLHPQFQNLLK--KSQNNTTNP 260
                        + A K           G+  +L +    P F+N L   K   + ++ 
Sbjct: 300 VLAEVRKNPASFAELAKKYSGDPGSAAQGGELGFLGKGATVPPFENALFALKQPGDISDV 359

Query: 261 YVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
             +  G   I + + +   +    A+K  L  +       K  +E   
Sbjct: 360 VQSDFGFHIIKLEEVKGGGVQPLEAVKPELERELRTQLANKKYSELAD 407


>gi|16763833|ref|NP_459448.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|161615353|ref|YP_001589318.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167551732|ref|ZP_02345485.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167990436|ref|ZP_02571536.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168231441|ref|ZP_02656499.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168240281|ref|ZP_02665213.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168261111|ref|ZP_02683084.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168818936|ref|ZP_02830936.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194442454|ref|YP_002039695.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194448749|ref|YP_002044487.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194469679|ref|ZP_03075663.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197262652|ref|ZP_03162726.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|200390757|ref|ZP_03217368.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|207855932|ref|YP_002242583.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|16418959|gb|AAL19407.1| peptidyl prolyl isomerase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161364717|gb|ABX68485.1| hypothetical protein SPAB_03124 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401117|gb|ACF61339.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194407053|gb|ACF67272.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194456043|gb|EDX44882.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197240907|gb|EDY23527.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|199603202|gb|EDZ01748.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205323503|gb|EDZ11342.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205330915|gb|EDZ17679.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205333949|gb|EDZ20713.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205340141|gb|EDZ26905.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205344153|gb|EDZ30917.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205350111|gb|EDZ36742.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206707735|emb|CAR32020.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|261245735|emb|CBG23532.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267992168|gb|ACY87053.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301157063|emb|CBW16547.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312911485|dbj|BAJ35459.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320084726|emb|CBY94517.1| putative protease maturation protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321226030|gb|EFX51081.1| Peptidyl-prolyl cis-trans isomerase ppiD [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322713525|gb|EFZ05096.1| Peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323128772|gb|ADX16202.1| Peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332987401|gb|AEF06384.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 623

 Score = 86.3 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/396 (9%), Positives = 102/396 (25%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     S+     +NG+ I+        
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL-IGGSNNYAAKVNGQEISRAQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                             +++ +++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                N    K    + E+ +   + K   +     R     + 
Sbjct: 180 TDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                             +  +        
Sbjct: 240 AATMQAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFATLA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ES   P+ +N   K +   +    +  G     + D +  
Sbjct: 300 KEKSTDIISARNGGDMGWLEESATVPELKNAGLKEKGQISGVIKSSVGFLVARLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDAA 395


>gi|229010553|ref|ZP_04167755.1| Foldase protein prsA 2 [Bacillus mycoides DSM 2048]
 gi|228750751|gb|EEM00575.1| Foldase protein prsA 2 [Bacillus mycoides DSM 2048]
          Length = 285

 Score = 86.3 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/304 (11%), Positives = 82/304 (26%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
            + F++     + ++S       S    T     IT  D  K+   LK +     L ++ 
Sbjct: 4   KSTFIITALISILMLSACGQKNDSATIATTTNSTITKSDFEKQ---LKDRYGKDTLYEMV 60

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
            Q++I +  K             + V+    +     G        F           ++
Sbjct: 61  AQDVITKKYK----------VSDDAVDKEVEKAKDQYG------EQFKATLENNRLKDEE 104

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 105 DFKNQIKFKLALNEAIKQSVTEKDVKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ ++            ++ +       + G   Y     + P+F+    K   
Sbjct: 145 SNENEAKEIKKKLDTGTSFEELAKQESQDLASKDNGGDLGYFGAGKMTPEFEKAAYKLKP 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE--AEYVKKLRSNA 312
           +  +NP  +  G   I + DK+DL     +K  +       ++       + ++     A
Sbjct: 205 DQISNPVKSPNGYHIIKLTDKKDLQPYDKVKDSIRKDLEEERLADPSFGQKLLQGELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 DIKI 268


>gi|168237567|ref|ZP_02662625.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194737891|ref|YP_002113483.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|194713393|gb|ACF92614.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197289587|gb|EDY28950.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 623

 Score = 86.3 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/396 (9%), Positives = 102/396 (25%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     S+     +NG+ I+        
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL-IGGSNNYAAKVNGQEISRAQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                             +++ +++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                N    K    + E+ +   + K   +     R     + 
Sbjct: 180 TDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKARFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                             +  +        
Sbjct: 240 AATMQAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFATLA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ES   P+ +N   K +   +    +  G     + D +  
Sbjct: 300 KEKSTDIISARNGGDMGWLEESATVPELKNAGLKEKGQISGVIKSSVGFLVARLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDAA 395


>gi|51473757|ref|YP_067514.1| protein export protein PrsA precursor [Rickettsia typhi str.
           Wilmington]
 gi|51460069|gb|AAU04032.1| protein export protein PrsA precursor [Rickettsia typhi str.
           Wilmington]
          Length = 286

 Score = 86.3 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 82/301 (27%), Gaps = 38/301 (12%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           + +IF  V ++S  ++    ++  T  G  + +  I +        +    ++       
Sbjct: 8   LSVIFLSVSMLSSIAFCDQDKVVATYKGGEVKESQIMQEFKPQLNLQSGETIKN------ 61

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
                                     ++   N  L  E+ +              +    
Sbjct: 62  --------------FDDFPLQDQEKLIKIYVNNLLLKEEVAKSSITSSKEFQEKLENAKN 107

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           Q    +++ N       +   +   NK         +  +  +L              QK
Sbjct: 108 QLAQQELLANYIKSNITDKMFDDEYNKYVDNLKGKEQIKVAHIL-----------VKSQK 156

Query: 201 RIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYL---LESDLHPQFQNLLKK-SQN 255
                +    +        E+F+  K    + G   Y+       L P+F+N       N
Sbjct: 157 EANTVKTKLSKGGNFNKLAEEFSLDKATASNGGVIGYIILNQSGQLVPEFENKAFALKVN 216

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             + P  T  G   I + +K+ +   I  K             +   +Y+  L + A + 
Sbjct: 217 EVSTPVKTDFGWHIIKVLEKKPVP--IPTKKEAKVTIDNILAAEILKKYISDLEAKADLK 274

Query: 316 Y 316
            
Sbjct: 275 I 275


>gi|262198048|ref|YP_003269257.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliangium ochraceum
           DSM 14365]
 gi|262081395|gb|ACY17364.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliangium ochraceum
           DSM 14365]
          Length = 342

 Score = 86.3 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 77/293 (26%), Gaps = 44/293 (15%)

Query: 34  KSWAMSSRIRTTINGEVIT----DGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
           +S         T+N EVIT       I+++   ++ +  + E +K  +  L+   +   E
Sbjct: 47  QSQTDVDAPLATVNDEVITVGDFQSQINRQAPYVRARYTSTEQKKEFLDTLVSFEVMAAE 106

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
            ++ G   D   V                                      Q +   +VK
Sbjct: 107 AQRRGFDKDPEVV----------------------------------RTLKQVMIQKLVK 132

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
             F  +    ++     +               V  +      +           A   +
Sbjct: 133 EQFTDELKPEDIPEEELRAYFDEHKEEYQRPDQVRAAAIVLDDKASADKLLSEAKAAAEK 192

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESD---LHPQFQNLLKKSQNNTTNPYVTQKG 266
             +                 S G   +  +S      P  +       N  ++      G
Sbjct: 193 NHVAFRNLVTAHSKDGDSKNSGGDLGFFDKSSSDVPAPVIEAAFALDSNQVSDVIDAGNG 252

Query: 267 -VEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
               I I  +R         +K  L  +    K  K + ++V  L+  A I+Y
Sbjct: 253 RFYIIKITGRRKAMSKSFDDVKRQLLNRVYRDKRVKMQEDFVAALKEKATINY 305


>gi|325107772|ref|YP_004268840.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces
           brasiliensis DSM 5305]
 gi|324968040|gb|ADY58818.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces
           brasiliensis DSM 5305]
          Length = 310

 Score = 86.3 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/309 (10%), Positives = 94/309 (30%), Gaps = 14/309 (4%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN- 69
            F+ +  ++F L    +         +    +   +    IT   +   +  L L +   
Sbjct: 6   RFLLVALSFFSLCTTFLAAQPEASPKSSQQELAALVGKTRITQAQVDLYLTTLGLPEDQW 65

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
                 AV +LI  TL +Q + +  +T  S T++            + E+  + L K G+
Sbjct: 66  DTHRSRAVDQLIERTLVRQFLNERNVTPPSATLDRQLALV-EQVLRNEENPEAALKKLGM 124

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
             +  +  L++   W   V+     +           ++    +   +     +   +P 
Sbjct: 125 TRDELQAELSLPLAWRRYVRQIVSER-----QIAEYFEKHQSELDGTKRKAAQIFLKLPQ 179

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPK--DCNKLEKFASKIHDVSIGKAQYLL-ESDLHPQF 246
           +  +      K   +  + +++  +       ++ +        G+         +    
Sbjct: 180 DASETDIEQAKSRLNELKQQIQAGQLTFAEAAQQHSESPSADKGGELGAFTFSGQMPAAI 239

Query: 247 -QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYV 305
            +   +      + P+ +  GV  + + ++                      ++   + V
Sbjct: 240 AKQAFETPVGEISEPFASSFGVHLLHVTEEIPG---QFSLEDARPAILDRYSDEIWKQAV 296

Query: 306 KKLRSNAII 314
            +L+    +
Sbjct: 297 NRLKQTTRV 305


>gi|253576879|ref|ZP_04854204.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251843746|gb|EES71769.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 376

 Score = 86.3 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/309 (11%), Positives = 87/309 (28%), Gaps = 19/309 (6%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN- 69
             +  L T     +       +      +S++  T  G  IT+ +  +   ++   +   
Sbjct: 1   MLLIALVTVLAFSVMAGCGKNASSGGKDTSKVIATYEGGEITENEFDREQRIVLALQPQM 60

Query: 70  ------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
                  +  +  V++ I     + + ++             F     + G         
Sbjct: 61  EQFMQMEDFRQYLVKQEIAYEYLEAKADEKTKEAGKKKAEEQFDLMKSSYGEEN------ 114

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                      +       +    V      K    +++      K    T        +
Sbjct: 115 FKNMLDAQKVSEAEFKDYMVRIYTVMEGERQKISEDDVKKEFEATKQDYTTAS-VRHILI 173

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL 242
            F+ PD K + +    K  K+ +    +        ++++       + G  + +  S+ 
Sbjct: 174 NFTDPDGKERTEEETLKLAKEVKAKLDKGEDFAALAKQYSEDPGSKDNGGLYENVEVSNW 233

Query: 243 HPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGE---IALKAYLSAQNTPTKIE 298
              F+        N   +P  T+ G   I +  + +   E      K  +       K++
Sbjct: 234 VEAFKQAALTQPLNQIGDPVKTEYGYHIIRVESRTEKKFEDLTQEQKDMIQTTLASNKLD 293

Query: 299 KHEAEYVKK 307
           +  A  ++K
Sbjct: 294 EFMAGDLEK 302


>gi|313888943|ref|ZP_07822603.1| putative peptidylprolyl isomerase PrsA1 [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845116|gb|EFR32517.1| putative peptidylprolyl isomerase PrsA1 [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 249

 Score = 86.3 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 84/283 (29%), Gaps = 47/283 (16%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKIN----GELEKIAVQELIVETLKKQEIEKSGI 95
            ++   +NG+ IT  D +  I  L  Q        EL K  V EL+ + L  ++  + G+
Sbjct: 4   DKVLAEVNGKKITGVDYNLFIDSLNPQLKQYFGGEELNKDVVNELVYQALLYEDAMEKGM 63

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
             +   +                                      +S+         +  
Sbjct: 64  DKEDEFIQ-------------------------------VVEKTKESMLKTYALGKLLAT 92

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
               + +I    ++ K+   +                      + + ++  E        
Sbjct: 93  AEVKDEDIKKFYEENKDAFKQGESADASHIL---------VEEEDKAREIYEKIKNGGDF 143

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICD 274
               +++++       G      +  +  +F++ + +++    T P  TQ G   I I  
Sbjct: 144 EELAKEYSTCPSKEKGGNLGTFTKGQMVKEFEDAVFENEVGTITEPVKTQFGYHIIKINQ 203

Query: 275 KRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           K D        +K  +  Q    K ++   + + +L+    + 
Sbjct: 204 KNDARELSFDEVKDRIVEQVRRQKEQEIYNKKITELKDKYEVK 246


>gi|56414392|ref|YP_151467.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363312|ref|YP_002142949.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56128649|gb|AAV78155.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094789|emb|CAR60322.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 623

 Score = 86.3 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/396 (9%), Positives = 103/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     S+     +NG+ I+        
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL-IGGSNNYAAKVNGQEISRAQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                             +++ +++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                N    K    + E+ +   + K+  +     R     + 
Sbjct: 180 TDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKSRFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                             +  +        
Sbjct: 240 AATMQALVSDADIQAYYDQHLDQFTQPERTRYSIIQTKTEDDAKAVLDALNKGEDFATLA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ES   P+ +N   K +   +    +  G     + D +  
Sbjct: 300 KEKSTDIISARNGGDMGWLEESATVPELKNAGLKEKGQISGVIKSSVGFLVARLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDAA 395


>gi|213613182|ref|ZP_03371008.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 240

 Score = 86.3 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 58/168 (34%), Gaps = 4/168 (2%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                G   +++   + + ++I+V E   R +L         +Q    K  + A + +  
Sbjct: 71  IRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMN-DQQARLKLEEIAADIKSG 129

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEY 269
                   ++++         G   +       P F++ L K      + P  +  G   
Sbjct: 130 KTTFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKLHKGQISAPVHSSFGWHL 189

Query: 270 IAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           I + D R +   + A K          K  +  A ++++ R++A +  
Sbjct: 190 IELLDTRKVDKTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKI 237



 Score = 65.9 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 12/129 (9%), Positives = 39/129 (30%), Gaps = 7/129 (5%)

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-L 250
            +     Q++ +   E              +++    +  G+  +    +L   F     
Sbjct: 1   SEQVNDAQRQAESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALS 60

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
              + +   P  +  G   + + D R     +        ++  + +P   ++     ++
Sbjct: 61  TAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMNDQQARLKLE 120

Query: 307 KLRSNAIIH 315
           ++   A I 
Sbjct: 121 EI--AADIK 127


>gi|168183618|ref|ZP_02618282.1| foldase protein PrsA [Clostridium botulinum Bf]
 gi|237796999|ref|YP_002864551.1| peptidylprolyl isomerase [Clostridium botulinum Ba4 str. 657]
 gi|259534738|sp|C3KW94|PRSA_CLOB6 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|182673144|gb|EDT85105.1| foldase protein PrsA [Clostridium botulinum Bf]
 gi|229260856|gb|ACQ51889.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
           Ba4 str. 657]
          Length = 336

 Score = 86.3 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/332 (12%), Positives = 103/332 (31%), Gaps = 21/332 (6%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK--RIALL 63
             S    + +L     ++ F    +V     A +      +NGE I   D+ +  R   +
Sbjct: 1   MKSAKKLLSVLCLGIFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLDENPRFKQV 60

Query: 64  KLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
             Q                    E +   + ELI E +  Q+ ++  +      +N    
Sbjct: 61  VSQMKMQYGEEFEKSEQGKEVIKEQKSQILDELITEKILLQKGKELKVIPKDEELNKEAD 120

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
           +          +     ++        K+ L        V++        ++++E    +
Sbjct: 121 KKVNEIKAVYNNDEKKFEETLKSTGFTKETLKEYLKDQIVIEKVINEATKDVKVEDKDAQ 180

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
           +         +  +    ++    ++ +   +K  K  +             +   SK  
Sbjct: 181 KYYNENQS-MFTEKPNTMNVSHILVKTEDEAKKVKKRLDAKEDFAKVAKEVSQDTGSKDK 239

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALK 285
              +G   Y   +      +  +   +   +NP  TQ G   I I  K++  +    A+K
Sbjct: 240 GGLLGDINYNDANFDPTFMKAAMALKEGAISNPVHTQFGYHIIKINSKKEYPVKKFDAVK 299

Query: 286 AYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
             +  Q    K ++   + +++ +  + I  Y
Sbjct: 300 EDIKKQLKQEKQQEAYTKKIEEWKKASKIKTY 331


>gi|229541454|ref|ZP_04430514.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus coagulans
           36D1]
 gi|229325874|gb|EEN91549.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus coagulans
           36D1]
          Length = 290

 Score = 85.9 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/303 (9%), Positives = 80/303 (26%), Gaps = 36/303 (11%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +  + + ++               +      N   +T  ++   +          +    
Sbjct: 1   MKKWVLSLVLAGSMFGLAACGNSGNSAVVKTNAGNVTKDELYNAMK--------DKYGST 52

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +Q+L +E +  ++        D            +      +  SSF           +
Sbjct: 53  VLQQLTIEKVLSKKYTVKKSEID-----------KQVNDTKKQLGSSFNTALQQYGYANE 101

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +          + +          E ++           ++   I               
Sbjct: 102 KDFRNSVKVGLLEQKAAEATIHPTEKQLKNYYNNDIKPKIKARHILVS------------ 149

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              + + +D ++   +        +K+++        G   +    ++   F+N   K  
Sbjct: 150 --SKSKAEDIKKQLDKGADFATLAKKYSTDTATASKGGDLGWFGAGEMDSDFENAAYKLK 207

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI-EKHEAEYVKKLRSNA 312
            N  + P  T  G   I +  ++       +K  +  Q   +K+  +     +KK    A
Sbjct: 208 VNEISGPVKTSYGYHIIQLTGEKQKKPYSEMKKDVVKQYKESKVTTEKIQSVLKKELKAA 267

Query: 313 IIH 315
            I 
Sbjct: 268 DIK 270


>gi|86158923|ref|YP_465708.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775434|gb|ABC82271.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 524

 Score = 85.9 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/385 (10%), Positives = 92/385 (23%), Gaps = 73/385 (18%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKS-----WAMSSRIRTTINGEVITDGD 55
           M   V  +    +  L    ++++F I       S        +      +NG+ I+  D
Sbjct: 1   MLDIVRANKKGILSWLIVLGIVVVFAINFGPGSLSKGGAGCGGAPAYAARVNGKSISAAD 60

Query: 56  ISKRIALLKLQKINGE-------------LEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             ++   L                     L + A+  L+   L  QE  + G+      V
Sbjct: 61  FERQYENLLRFYQQQAGEGFTRELAAQLGLGRQAMGVLVDRELALQEARRRGVVVTDREV 120

Query: 103 NYFFVQH---ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF------- 152
           +    Q      N     E +   +        +F+  +    ++  ++           
Sbjct: 121 SEAVHQMPAFQENGQFRYETYLEAVRANYGSPGNFEAAVRDDLLYQKILGALVETVKVPA 180

Query: 153 --------------------------MLKYGNLEM-------------EIPANKQKMKNI 173
                                       +    +              E    +   +  
Sbjct: 181 TEVRAQWAASADRAALKFVRFPISAAQAEVKVSDADAKAFADREGARVEAFYKENADRYD 240

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQ-KRIKDAEESRLRLPKDCNKLEKFASKIH-DVSI 231
              +  +R VL  +      ++     K+I +A     +           +   +     
Sbjct: 241 QKAKVHVRHVLARVAPGASADEEAAARKKIDEAAARVKKGEDFAKVAAALSDDPNTKDRG 300

Query: 232 GKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDK---RDLGGEIALKAY 287
           G   ++ E      F       +    + P  T  G   I   +    R +  E A    
Sbjct: 301 GDLGFVSEGLADAAFAKAALALKAGQVSEPVRTPAGWHLIRAEEVVPARQVTLEAARLDI 360

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNA 312
                   + +    E  +     A
Sbjct: 361 ARELVARDRAQALAREKAQAALDAA 385



 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 3/76 (3%)

Query: 243 HPQFQNLLKKSQNNT-TNPYVTQKG--VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
               Q  L           + T  G  V  + + +  D     A +A + A+    K E+
Sbjct: 433 PELAQAALTAKAGEVLPKVFDTPSGPVVAVVELRESPDPARFEAERAGIEARLQGMKAEQ 492

Query: 300 HEAEYVKKLRSNAIIH 315
               +++ LR  A I 
Sbjct: 493 VRRAWLEDLRGKAKIE 508


>gi|224582290|ref|YP_002636088.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|224466817|gb|ACN44647.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 623

 Score = 85.9 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/396 (9%), Positives = 102/396 (25%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     S+     +NG+ I+        
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL-IGGSNNYAAKVNGQEISRAQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                             +++ +++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                N    K    + E+ +   + K   +     R     + 
Sbjct: 180 TDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                             +  +        
Sbjct: 240 AATMQAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFATLA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ES   P+ +N   K +   +    +  G     + D +  
Sbjct: 300 KEKSTDIISARNGGDMGWLEESATVPELKNAGLKEKGQISGVIKSSVGFLVARLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDAA 395


>gi|329957336|ref|ZP_08297856.1| PPIC-type PPIASE domain protein [Bacteroides clarus YIT 12056]
 gi|328523049|gb|EGF50152.1| PPIC-type PPIASE domain protein [Bacteroides clarus YIT 12056]
          Length = 455

 Score = 85.9 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/273 (11%), Positives = 80/273 (29%), Gaps = 12/273 (4%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKR--IALLKLQKINGELE 73
                +  +  +     Y    +   +   +  E I   ++ +    AL + +K + +  
Sbjct: 7   FKFVVLFALTLLAGSTVYGQDNVIDEVVWVVGDEAILKSEVEEARMSALYEGRKFDRDPY 66

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNY---FFVQHARNTGLSAEDFSSFLDKQGIG 130
            +  +E+ V+ L   +     I      V     +          S E    + +K    
Sbjct: 67  CVIPEEIAVQKLFLHQAALDSIEVSEAEVIQRVDYMTNMYITNIGSREKMEEYFNKTSSQ 126

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                +  A + +    ++   + +      E+    + +   ++     +  +  I   
Sbjct: 127 IRETLRDNAREGLKVQKMQQKLVGEIKITPAEVRRYFKDLPQDSIPYIPTQVEVQIITQQ 186

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-----DVSIGKAQYLLESDLHPQ 245
                  ++   K   +   R+ K        A          ++ G+  +     L P 
Sbjct: 187 PKVPLEEIENVKKRLRDFTDRITKGETSFSTLARMYSEDRGTAINGGEMPFTGRGYLDPA 246

Query: 246 FQN--LLKKSQNNTTNPYVTQKGVEYIAICDKR 276
           F N     +  N  +    ++ G   I + +KR
Sbjct: 247 FANVAFNLQDPNKVSKIVESEFGFHIIQLMEKR 279


>gi|325954018|ref|YP_004237678.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Weeksella virosa DSM
           16922]
 gi|323436636|gb|ADX67100.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Weeksella virosa DSM
           16922]
          Length = 448

 Score = 85.9 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 87/277 (31%), Gaps = 12/277 (4%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRI---RTTINGEVITDGDISKRIALLKLQKINGELE 73
           T   + +  C +    +     +++I      +  E++ D D+ +     KLQ +  +  
Sbjct: 4   TVLLLTLFMCSIAQGLFAQTHKANKIEGIAAVVGDEIVLDSDVERDFQTAKLQGMEVKDR 63

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNY-----FFVQHARNTGLSAEDFSSFLDKQG 128
              +  +++E +     ++  +   +N            +  +  G        F  K  
Sbjct: 64  CEFLNNMLLEKVLIDRAKQDTLVVVTNDEVQRTLKGQIERFTQQIGSEKAVIDYFGFKTK 123

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV--REYLIRTVLFS 186
               +  QY    +I+    +   +        E+    ++ K      ++    + +  
Sbjct: 124 AELENELQYYIRDNIYAREKRERVVSGLDATPEEVRMFFEEHKTELPDVKDEYSISHIIL 183

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQ 245
            P+   +N+  V   +K  ++          K   ++       + G+   +    +  +
Sbjct: 184 YPEIDPENEQKVIDELKQIKKDVEEGSSFATKAILYSEDPGSATNGGQYLKVKRGMMVKE 243

Query: 246 F-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           F        +   + P+ T  G   I +  ++    +
Sbjct: 244 FDAVAFNLDEGQVSEPFKTDFGYHIIQLEKRKGQELD 280


>gi|62179064|ref|YP_215481.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|62126697|gb|AAX64400.1| peptidyl prolyl isomerase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
          Length = 623

 Score = 85.9 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/396 (9%), Positives = 102/396 (25%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     S+     +NG+ I+        
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL-IGGSNNYAAKVNGQEISRAQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                             +++ +++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                N    K    + E+ +   + K   +     R     + 
Sbjct: 180 TDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                             +  +        
Sbjct: 240 AATMQAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFATLA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ES   P+ +N   K +   +    +  G     + D +  
Sbjct: 300 KEKSTDIISARNGGDMGWLEESATVPELKNAGLKEKGQISGVIKSSVGFLVARLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDAA 395


>gi|94502167|ref|ZP_01308665.1| peptidyl-prolyl cis-trans isomerase D [Oceanobacter sp. RED65]
 gi|94425692|gb|EAT10702.1| peptidyl-prolyl cis-trans isomerase D [Oceanobacter sp. RED65]
          Length = 608

 Score = 85.9 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 44/399 (11%), Positives = 103/399 (25%), Gaps = 89/399 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +          +    +++ F +  I S  +          +NGE IT  ++ + +
Sbjct: 1   MLQAIRDGSKGIAARIIVGLIILTFALFGIESIVALGGGEDAPAEVNGEEITLLEVQQAV 60

Query: 61  ALLKLQKINGE-------------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF- 106
              K +                  L + AV+ LI + L  Q   +SG+      ++    
Sbjct: 61  NAQKTRLQRQFGENFDPAMFDENLLRQAAVRSLIDQELLAQAATESGVYISDQDIDRLIV 120

Query: 107 --VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN-------------- 150
                  N    A  +   +   G     +++ +        V                 
Sbjct: 121 QSPNFQVNGAFDAATYDLTIRSMGFTRMTYREAVRESIKTQQVQSAWQGTEFATDLEKEQ 180

Query: 151 -------------------DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                              +F       + +I +  +   +  +    +          K
Sbjct: 181 LSLLENQIRSIKYKEYKSDNFKESVQLSDEDIQSFYEANDSRFMTTESVIVDYVIFDKEK 240

Query: 192 LQNQ-----GFVQKRIKDAEESRLRLPKD---------------------------CNKL 219
           L  Q       +Q+R     +      +                                
Sbjct: 241 LAEQVIVTEDEIQERYDAMLQESQENKEYRVAHIMLLSADDEARKTLSEAKSKLGQGESF 300

Query: 220 EKFASKIHD-----VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAIC 273
           E  A +  +      + G   +   +   P+F + +        ++   T+ G+  I + 
Sbjct: 301 ESLAERYSEDDTSKYAGGDLGFASATIYEPEFADAVLSLEVGAVSDIVETRDGLHLIKLV 360

Query: 274 DKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
           D R  ++     +K  +       +IE    E ++  + 
Sbjct: 361 DTRQPEIAAYDEMKDTIEQNLVNEQIEVRYIEMLESFKD 399


>gi|206561958|ref|YP_002232721.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia J2315]
 gi|198037998|emb|CAR53944.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia J2315]
          Length = 272

 Score = 85.9 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 44/307 (14%), Positives = 88/307 (28%), Gaps = 55/307 (17%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           +L I  +   +S    A ++    T+NG  IT  D+   +     Q  + ++ +    +L
Sbjct: 6   LLTIVALAGALSGPVHAQTAATVATVNGTPITQTDVDTLLRA-SGQPDSPQIRQAIKNQL 64

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I   L +Q  EK+                                          Q   +
Sbjct: 65  ITRVLVQQAAEKANYADKPEVKAA------------------------------MQQAKV 94

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
            +     +++    +    E       + +  +   E+  R ++   P         ++ 
Sbjct: 95  TAEVQLYLRDHVKPEPVTDEQVKARYDELVAALGKNEFKPRLIVVKDPVAAATVLSELKA 154

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD---------LH-PQFQNLL 250
                               +++      + G+  ++  +          L  P  Q L 
Sbjct: 155 -----------GKSFDGLARQYSVAPSRDTGGELPWVSFNTPAVEGRTAGLPLPVAQALE 203

Query: 251 KKSQNNTTNPYVTQKGV-EYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
           K S    T   +   GV   + +  KR   + G    K  L  Q      EK  A+ +  
Sbjct: 204 KLSVGAVTKDSIPVDGVRAIVKLDAKRPTQVPGFETAKPTLQQQLQAIAAEKASAQMIGN 263

Query: 308 LRSNAII 314
           L  +A I
Sbjct: 264 LLKDAKI 270


>gi|322614730|gb|EFY11659.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322618836|gb|EFY15724.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322623543|gb|EFY20382.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322629158|gb|EFY25937.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322631879|gb|EFY28633.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322637384|gb|EFY34086.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322642069|gb|EFY38679.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322647888|gb|EFY44363.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322653272|gb|EFY49605.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322660579|gb|EFY56815.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322664731|gb|EFY60924.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322669216|gb|EFY65366.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322670761|gb|EFY66894.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322679000|gb|EFY75055.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322682029|gb|EFY78054.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322685142|gb|EFY81139.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323192964|gb|EFZ78187.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323196954|gb|EFZ82096.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323203939|gb|EFZ88956.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323206976|gb|EFZ91929.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323214179|gb|EFZ98937.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323214497|gb|EFZ99248.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323219161|gb|EGA03658.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323227003|gb|EGA11184.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323230179|gb|EGA14299.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323233917|gb|EGA18006.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323238389|gb|EGA22447.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323244076|gb|EGA28085.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323246237|gb|EGA30220.1| periplasmic folding chaperone [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251863|gb|EGA35726.1| periplasmic folding chaperone [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323257859|gb|EGA41538.1| periplasmic folding chaperone [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261127|gb|EGA44719.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323264943|gb|EGA48442.1| periplasmic folding chaperone [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323272506|gb|EGA55913.1| periplasmic folding chaperone [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 623

 Score = 85.9 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/396 (9%), Positives = 102/396 (25%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     S+     +NG+ I+        
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL-IGGSNNYAAKVNGQEISRAQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                             +++ +++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                N    K    + E+ +   + K   +     R     + 
Sbjct: 180 TDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKARFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                             +  +        
Sbjct: 240 AATMQAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFATLA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ES   P+ +N   K +   +    +  G     + D +  
Sbjct: 300 KEKSTDIISARNGGDMGWLEESATVPELKNAGLKEKGQISGVIKSSVGFLVARLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDAA 395


>gi|114777815|ref|ZP_01452746.1| peptidyl-prolyl cis-trans isomerase D [Mariprofundus ferrooxydans
           PV-1]
 gi|114551806|gb|EAU54346.1| peptidyl-prolyl cis-trans isomerase D [Mariprofundus ferrooxydans
           PV-1]
          Length = 636

 Score = 85.9 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/258 (11%), Positives = 68/258 (26%), Gaps = 8/258 (3%)

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
                 L+L  +   L K  V  +     + +  ++    +    +    V  A      
Sbjct: 148 QDYENDLRLNIMVDALHKALVDSV--HVSETEIRDRFNHDYQQRVLAAVVVDPATQLNKV 205

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
                           ++K  L I     ++            E E+    +K K    R
Sbjct: 206 KVSDEQAKAWYEAHKQNYKSPLRINVNTVEIDPRKLAEDVQVDESEVRKAFEKRKAEFSR 265

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGK 233
               +     I   +   +       K  E ++ R+    +     +  +      S G+
Sbjct: 266 PEERKAQHILIKVAENAPEAVRAAARKKIEAAQARIKAGEDFSAVAKAVSEDGTASSGGE 325

Query: 234 AQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSA 290
             +  +  +   F   +    +   ++   T  G   I + D R         +K  +  
Sbjct: 326 LGWFKQGSMVTAFDQAVFAMDKGQVSDIVETPFGYHLIRLEDIRPAHEASYDDVKDGIRQ 385

Query: 291 QNTPTKIEKHEAEYVKKL 308
                +  +   +  + L
Sbjct: 386 DLVKARAAEEAYKLSQDL 403



 Score = 58.9 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/321 (9%), Positives = 85/321 (26%), Gaps = 30/321 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + +    +I  +    + + F +  +  Y     +  I  T+NG+ I   +  +  
Sbjct: 1   MLESMRSHAQGWIAKIILGGIALSFVLWGVGDYFLGGKTEPI-ATVNGKAIGGAEFYQAY 59

Query: 61  -------------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
                                +  +++  +Q LI   +     ++  +   ++ V     
Sbjct: 60  ERQLNAYRSMLGKQYSSALMDSLGVKETTLQTLINRRIMLDTAQQLHLAAPASVVLATVH 119

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM-EIPAN 166
                      D   +            Q          +V         ++ + E    
Sbjct: 120 SDPSFQSARGFDVQRYHALTRNMGFSSAQDYENDLRLNIMVDALHKALVDSVHVSETEIR 179

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
            +   +   R      V  +   NK++      K   +A +   +           +   
Sbjct: 180 DRFNHDYQQRVLAAVVVDPATQLNKVKVSDEQAKAWYEAHKQNYK-----------SPLR 228

Query: 227 HDVSIGKAQYLLESDLHP----QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEI 282
            +V+  +      ++       + +   +K +   + P   +     I + +        
Sbjct: 229 INVNTVEIDPRKLAEDVQVDESEVRKAFEKRKAEFSRPEERKAQHILIKVAENAPEAVRA 288

Query: 283 ALKAYLSAQNTPTKIEKHEAE 303
           A +  + A     K  +  + 
Sbjct: 289 AARKKIEAAQARIKAGEDFSA 309


>gi|88797590|ref|ZP_01113179.1| Parvulin-like peptidyl-prolyl isomerase [Reinekea sp. MED297]
 gi|88779762|gb|EAR10948.1| Parvulin-like peptidyl-prolyl isomerase [Reinekea sp. MED297]
          Length = 404

 Score = 85.9 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/308 (10%), Positives = 89/308 (28%), Gaps = 31/308 (10%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--- 71
              +  +        + +        RI    N +VIT+  +++R+  ++ Q  +     
Sbjct: 4   WFKSALLATSLL---MSTLTYAQTLDRIAAVANDDVITELQLAQRVEAVRQQYRSNPNVL 60

Query: 72  -----LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
                L +  +  +I+E+L+ Q  E+  +      VN      A    ++ +   + +  
Sbjct: 61  PTDDVLTRQVLDAMILESLQMQLAERGNLVIPEQQVNAAIQSIASRQNMTLDQLLAAVQS 120

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
            G   + F++ +  +    ++ +     +    + E+    +     +++E   +     
Sbjct: 121 SGQSVSDFREQIRREITLNELQQQIVGRQIFISDAEVERFLKSQSGQSLQETEYQLYYKR 180

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
              ++      +  R+   E                                   +   F
Sbjct: 181 FDVDQQAEADALVDRLNSGESLLD-----------------SPDSRDLGMRTLDQIPSIF 223

Query: 247 QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNT--PTKIEKHEAEY 304
           + L+   + N          +    + DK +       +  L               A+ 
Sbjct: 224 RTLVPVLEENEAVLLPRDGVLHLAQLADKTEAASVNIEEYQLRHILIKTDQLFNAESAQA 283

Query: 305 V-KKLRSN 311
           + + LR  
Sbjct: 284 LAEDLRQR 291



 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/274 (10%), Positives = 85/274 (31%), Gaps = 13/274 (4%)

Query: 50  VITDGDISKRIA----LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
            IT  ++ ++I      +   ++   L+  + Q L     +           D       
Sbjct: 135 EITLNELQQQIVGRQIFISDAEVERFLKSQSGQSLQETEYQLYYK---RFDVDQQAEADA 191

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
            V    +     +   S        D     +     + P + +N+ +L   +  + +  
Sbjct: 192 LVDRLNSGESLLDSPDSRDLGMRTLDQIPSIFRT---LVPVLEENEAVLLPRDGVLHLAQ 248

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
              K +  +V     +     I  ++L N    Q   +D  +  L         ++++  
Sbjct: 249 LADKTEAASVNIEEYQLRHILIKTDQLFNAESAQALAEDLRQRVLNGESMAELADEYSQD 308

Query: 226 I-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-EI 282
                  G+  +    +    F++      +   ++ + +  G  ++ +  +R       
Sbjct: 309 NGSRGRGGELGWATLDNYVESFRDAARSTEEGELSDVFRSPYGFHFLRVEGQRTRDVGTD 368

Query: 283 ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            L+  +  Q +  +  +    +  +LR+ + +  
Sbjct: 369 VLRNQIRNQLSQQRYSEALQRWQSELRAESFVEI 402


>gi|47568364|ref|ZP_00239065.1| peptidyl-prolyl cis-trans isomerase [Bacillus cereus G9241]
 gi|47554912|gb|EAL13262.1| peptidyl-prolyl cis-trans isomerase [Bacillus cereus G9241]
          Length = 285

 Score = 85.9 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/304 (10%), Positives = 81/304 (26%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + +++      SS    T     IT  D  K++             K  
Sbjct: 4   KHIFIITALISLLMLAACGQKNSSATVATATDSTITKSDFEKQLK--------DRYGKDM 55

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           + E++ + +  ++ + S    D                   +  +   + +   +  FK 
Sbjct: 56  LYEMMAQDVITKKYKVSDADVDKEVQ-------KAKNQYGDQFTAVLENNRLKDEADFKN 108

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
            +  +    + +K     K                             +           
Sbjct: 109 QIKFKLAMNEAIKKSVTEKDVKD------------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ ++            ++ +  +      G   Y     + P+F+    K   
Sbjct: 145 SDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFNSGKMTPEFETAAYKLKV 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              ++P  +  G   I +  K+DL     +K  +       +I       + ++K    A
Sbjct: 205 GQISDPVQSPNGYHIIKLTGKKDLQPFNEVKDSIRKNLEAERIADPTFSHKLLQKELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|157825956|ref|YP_001493676.1| protein export protein prsA precursor [Rickettsia akari str.
           Hartford]
 gi|157799914|gb|ABV75168.1| protein export protein prsA precursor [Rickettsia akari str.
           Hartford]
          Length = 282

 Score = 85.9 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 81/301 (26%), Gaps = 38/301 (12%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           + +IF  V ++S   +A   ++  T  G  + +  I K        +    ++       
Sbjct: 4   LSVIFLSVSMLSGIVFADQDKVVATYKGGEVKESQIMKEFKPQLNLQSGETIKN------ 57

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
                                     ++   N  L   + +              +    
Sbjct: 58  --------------FDDFPPQDQEKLIKIYVNNLLLKAEVAKSNITSSKEFQEKLENAKN 103

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           Q    +++ N       +   +   NK         +  +  +L              QK
Sbjct: 104 QLAQQELLANYIKSNITDKMFDDEYNKYVGNLKGKEQIKVAHIL-----------VKSQK 152

Query: 201 RIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYL---LESDLHPQFQNLLKK-SQN 255
              D +    +        E+ +  K    + G   Y+       L P+F+N       N
Sbjct: 153 EANDIKTKLSKGGNFTKLAEELSLDKASASNGGVIGYIILNQPGQLVPEFENKAFALKVN 212

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             + P  T  G   I + +K+ +   I  K             +   +Y+  L S A + 
Sbjct: 213 EVSIPVKTTFGWHIIKVLEKKPVP--IPTKEEAKVTIDNILAAEVLKKYISDLESKADLK 270

Query: 316 Y 316
            
Sbjct: 271 I 271


>gi|52144166|ref|YP_082662.1| peptidylprolyl isomerase [Bacillus cereus E33L]
 gi|51977635|gb|AAU19185.1| peptidyl-prolyl cis-trans isomerase (protein export protein)
           [Bacillus cereus E33L]
          Length = 285

 Score = 85.9 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 82/304 (26%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + +++      SS    T     IT  D  K+   LK +     L ++ 
Sbjct: 4   KHIFIITALISILMLAACGQKDSSATVATATDSTITKSDFEKQ---LKDRYGKDMLYEMM 60

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
            Q++I +  K  E +       + +      ++        ++                 
Sbjct: 61  AQDVITKKYKVSEDDVDKEVQKAKSQYGDQFKNILKNNGLKDEA---------------- 104

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 105 DFKNQIKFKLAMNEAIKKSVTEKDVKA--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ ++            ++ +  +      G   Y     + P+F+    K   
Sbjct: 145 SDENEAKEIKKKLDVGASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYKLKV 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              +NP  +  G   I + DK++L     +K  +       +I       + ++K    A
Sbjct: 205 GQISNPVKSPNGYHIIKLTDKKELKPYDEVKDSIRKNLEEERIADPTFSHKLLQKELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|227823202|ref|YP_002827174.1| putative foldase/peptidyl-prolyl cis-trans isomerase [Sinorhizobium
           fredii NGR234]
 gi|227342203|gb|ACP26421.1| putative foldase/peptidyl-prolyl cis-trans isomerase [Sinorhizobium
           fredii NGR234]
          Length = 284

 Score = 85.9 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/286 (10%), Positives = 70/286 (24%), Gaps = 48/286 (16%)

Query: 36  WAMSSRIRTTINGEVITDGDISKRIALLKLQ---KINGELEKIAVQELIVETLKKQEIEK 92
              +  +   +  + I   ++   I  L  Q       +    A+  +I   L  ++ EK
Sbjct: 23  AEGTDPVVAKVGDQEIRQSELDLAITSLDPQLQRMPEEQKRAAALSAVIDVKLLVKDAEK 82

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
            G+                              +          +L  + +     K   
Sbjct: 83  EGL------------------------------QNDAVFKQRVAFLTERELHNAFFKKHV 112

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
           +      E++   +K+        E   R +L    D        +              
Sbjct: 113 VDAVTKEEVKARYDKEIAAIPAQEEVKARHILVKTEDEAKAIIKELDA-----------G 161

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT--NPYVTQKGVEYI 270
                  +  ++  +    G   Y  +  + P+F+      +  T    P  +Q G   I
Sbjct: 162 KSFVELAKAKSTDPNKDDGGDLGYFTKGRMVPEFETAAFALEKGTYTKTPVKSQFGFHVI 221

Query: 271 AICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + DKR           +  Q     +       +   +    +  
Sbjct: 222 LVEDKRPQAP--PPLEQVEPQVRQLIMRDKYLALLDTAKKATGVEI 265


>gi|134295947|ref|YP_001119682.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           vietnamiensis G4]
 gi|134139104|gb|ABO54847.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           vietnamiensis G4]
          Length = 260

 Score = 85.9 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 85/278 (30%), Gaps = 47/278 (16%)

Query: 43  RTTINGEVITDGDISKRIALL--KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I    +   +A L  + Q  + +L++   QEL+   +  QE  + GI    +
Sbjct: 25  IAVVNGTPIPKSRVDAMVAQLVQQGQADSPQLQQAVRQELVNREILMQEAIREGIPNRPD 84

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q++    +  +F+ K    +
Sbjct: 85  VKAQI-------------------------------AVAQQTVVLRSMIENFLKKNQPTD 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+ A    +                + + +       + +            K  +  +
Sbjct: 114 AEVKARYDDLVKGAGGNREYHLHHILVDNEQQAKDLIAKIK---------AGAKFEDLAK 164

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAICDKRD 277
           +++       + G   +       P+F    +K  +   T+ P  TQ G   I + D RD
Sbjct: 165 QYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDQPVKTQFGWHIIRVDDVRD 224

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +         + AQ     +++    + + LR  A I 
Sbjct: 225 VAP--PPFDQVKAQIAQQIVQQKLQAFEEGLRQQAKIQ 260


>gi|238764856|ref|ZP_04625797.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia kristensenii ATCC
           33638]
 gi|238696963|gb|EEP89739.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia kristensenii ATCC
           33638]
          Length = 627

 Score = 85.9 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/398 (9%), Positives = 107/398 (26%), Gaps = 87/398 (21%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
              +  + ++ +  +    +++ F +  + SY     +      +NG+ I+ G + + + 
Sbjct: 1   MDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSNDF-AAKVNGQEISRGQLEQAVQ 59

Query: 62  LLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
             + +                    +L +  + +L+   L  Q  +K G+T     V   
Sbjct: 60  SERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKDA 119

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY--------------------------LA 139
             Q          D S +L+          Q+                           A
Sbjct: 120 IRQAPYFQTDGKFDNSKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPIEA 179

Query: 140 IQSIWPDVVKNDF----------MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                  + + +             +    + E+ A   + KN  +    ++    ++  
Sbjct: 180 QAMSELILQQREVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISFIAMDA 239

Query: 190 NKLQNQG-------------------------------FVQKRIKDAEESRLRLPKDCNK 218
             +Q++                                  +   K A +   +       
Sbjct: 240 AAMQDKITITEEDIAAYYEQHKSTYTQPEQRNYSVIQFKTEAEAKTALDELKKGADFAAM 299

Query: 219 LEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
            ++ ++  I   + G+  +L       + +      +   ++   +  G   + + D + 
Sbjct: 300 AKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNDIKP 359

Query: 278 LGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
              +    +   L+ Q    K         +K+   A 
Sbjct: 360 AQVKPLSEVHDALAKQVKQEKAVDAYYALQQKVSEAAT 397


>gi|17546434|ref|NP_519836.1| peptidyl-prolyl cis-trans isomerase transmembrane protein
           [Ralstonia solanacearum GMI1000]
 gi|17428732|emb|CAD15417.1| probable peptidyl-prolyl cis-trans isomerase transmembrane protein
           [Ralstonia solanacearum GMI1000]
          Length = 648

 Score = 85.9 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 46/419 (10%), Positives = 102/419 (24%), Gaps = 107/419 (25%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   V T     + L+    V   F    +  Y  +   S     +   VIT  ++  R+
Sbjct: 1   MLDFVRTH-RRLMFLVLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDTVITTSELDTRV 59

Query: 61  -------------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
                             Q    ++ +  +  +I + +   E  ++ ++   + V     
Sbjct: 60  REQTERLRQMLGAQYDPRQFEGPQMRRDVLDGIIQQRVMVNEASRANLSVADSKVRETIE 119

Query: 108 Q-------HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK----------- 149
           Q          +     + +   L  QG+    F   L  + +   + +           
Sbjct: 120 QIPAVAQLRKPDGKFDTDAYIKLLAAQGMTPEQFDARLRSELVLQQIPQSIVSSAFVPKS 179

Query: 150 ----------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
                                  D+  K    +  I A     +        ++      
Sbjct: 180 LVDRLIEARDQQREVQALLFKPADYAAKVTVDDKAIQAYYDAHQQEFAVLEQVKAEYVVF 239

Query: 188 PDNKLQNQG----FVQKRIKDAEESRLRLPKDCNKL------------------------ 219
              ++  Q        K   D   +R +  +                             
Sbjct: 240 SGEEMMKQIPVTPEQLKEYYDQNAARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEE 299

Query: 220 ------------EKFASKIHDV-----SIGKAQYLLESDLHPQFQNLLK--KSQNNTTNP 260
                        + A K           G+  +L +    P F+N L   K   + ++ 
Sbjct: 300 VLAEVRKSPGSFAELAKKYSGDPGSAAQGGELGFLAKGATVPPFENALFALKQPGDISDV 359

Query: 261 YVTQKGVEYIAICDKRDLG------GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             +  G   I + D +  G       +  L+  +  Q    K  +    +   +   + 
Sbjct: 360 VESDFGFHIIKLEDVKGGGVQSLDAVKPELEREVRTQLANKKYTELADAFSNGVEDQSD 418


>gi|182419506|ref|ZP_02950757.1| foldase protein PrsA [Clostridium butyricum 5521]
 gi|237666290|ref|ZP_04526277.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182376636|gb|EDT74209.1| foldase protein PrsA [Clostridium butyricum 5521]
 gi|237658380|gb|EEP55933.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 247

 Score = 85.9 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 78/281 (27%), Gaps = 39/281 (13%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
           M +++     G  IT+ D++  IA    Q+      + A + L+ + +  +   K G   
Sbjct: 1   MENKVLAIAAGHEITENDLNALIARYPEQQRAAFNSEEAKKNLLEQLISFELFNKFGQEL 60

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
           + +    +    A  T       +                            N  +    
Sbjct: 61  ELDKTQEYKDAVASITKEVLTSMAM---------------------------NKALADVT 93

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             + +      + K+       +      +   +  N           +E         +
Sbjct: 94  VTDEDAKKYYDENKDAFSVPPTVSARHILVKTEEEAN---------KVKEEINGGLSFAD 144

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKR 276
              K++S       G      +  + P+F+    +      T P  TQ G   I +  K 
Sbjct: 145 AAMKYSSCPSKEQGGNLGEFSKGMMVPEFEKASFEAEIGVLTEPVKTQFGYHLIIVDSKN 204

Query: 277 D--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +  +     +K  +  +       K   + + +L+    + 
Sbjct: 205 EGAVKSFEEVKDSVVNELLKRNQHKKYDDLMNQLQEKYGVE 245


>gi|206977675|ref|ZP_03238567.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus H3081.97]
 gi|206744103|gb|EDZ55518.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus H3081.97]
          Length = 285

 Score = 85.9 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/304 (10%), Positives = 76/304 (25%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + ++S       S    T     IT  D  K++             K  
Sbjct: 4   KHIFIITALISILMLSACGQKNDSDPVATATDSTITKSDFEKQLK--------DRYGKDM 55

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           + E+I + +  ++ + S    D            +   +   +                 
Sbjct: 56  LYEMIAQDVITKKYKVSDDDVDKELQKAKNQYGDQFKNVLKNNGLKDEADF--------- 106

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 107 --KNQIKFKLAMNEAIKKSITEKDVKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ ++            ++ +  +      G   Y     + P+F+    K   
Sbjct: 145 SDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYKLKV 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              +NP  +  G   I + DK++L     +K  +       +I       + ++     A
Sbjct: 205 GQISNPVTSPNGYHIIKLTDKKELKPYDEVKDSIRKNLEEERISDPIFGKKLLQNELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|229195463|ref|ZP_04322231.1| Foldase protein prsA 2 [Bacillus cereus m1293]
 gi|228588003|gb|EEK46053.1| Foldase protein prsA 2 [Bacillus cereus m1293]
          Length = 285

 Score = 85.5 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/304 (9%), Positives = 76/304 (25%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + ++S       S    T     IT  D  K++             K  
Sbjct: 4   KHIFIITALLSILMLSACGQKNDSDTVATATDSTITKSDFEKQLK--------DRYGKDM 55

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           + E++ + +  ++ + S    D            +   +   +                 
Sbjct: 56  LYEMMAQDVITKKYKVSDDDVDKELQKAKNQYGDQFKNVLRNNGLKDEADF--------- 106

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 107 --KNQIKFKLAMNEAIKKSITEKDVKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ ++            ++ +  +      G   Y     + P+F+    K   
Sbjct: 145 SDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYKLKV 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              +NP  +  G   I + DK++L     +K  +       +I       + ++     A
Sbjct: 205 GQISNPVTSPNGYHIIKLTDKKELKPYDEVKDSIRKNLEEERISDPIFGKKLLQNELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|150025239|ref|YP_001296065.1| peptidyl-prolyl cis-trans isomerase precursor [Flavobacterium
           psychrophilum JIP02/86]
 gi|149771780|emb|CAL43254.1| Peptidyl-prolyl cis-trans isomerase precursor [Flavobacterium
           psychrophilum JIP02/86]
          Length = 459

 Score = 85.5 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/318 (11%), Positives = 95/318 (29%), Gaps = 13/318 (4%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +     + I    ++ + ++   + + + +       +   +   VI D DI K    LK
Sbjct: 3   INNFKMNIISSKLSFIIALLAISLGVSAQEKKQKVDGVIAVVGNYVILDSDIDKTTLELK 62

Query: 65  LQ--KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN----YFFVQHARNTGLSAE 118
            Q   +        + +L+ + L      +  I  +   VN              G   +
Sbjct: 63  QQGVNVKDVTRCQLLGKLLEDKLYAHHAVQDSIVIEDKEVNSKLDEQVSYMVEQLGSMDK 122

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
               F              +   +     ++   +        E+    + +    +  +
Sbjct: 123 VIQYFKKSNEQDFRTELFDIIKINKLTAEMQKKVVDAVIITPEEVRNFFKAIPKADLPVF 182

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK----FASKIHDVSIGKA 234
                +  I      +Q   QK I   +  +  + +  +   K       K    + G  
Sbjct: 183 GAEMEVAQIVVKPTVSQEAKQKVIDQLKAIKKEVQEGSSFFGKAVLYSEDKGSSSNGGYY 242

Query: 235 QYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNT 293
           +    +    +F+++     +   + P++T  G   I +   R    ++     +S + +
Sbjct: 243 KMDRRTQFVKEFKDVAFGLKEGEISEPFLTDFGYHIIYLEKIRGQEVDLRHI-VISPKVS 301

Query: 294 PTKIEKHEAEYVKKLRSN 311
              + K   E ++ +R  
Sbjct: 302 DEAL-KVSKEKIELIRKR 318


>gi|300715595|ref|YP_003740398.1| peptidyl-prolyl cis-trans isomerase D [Erwinia billingiae Eb661]
 gi|299061431|emb|CAX58543.1| Peptidyl-prolyl cis-trans isomerase D [Erwinia billingiae Eb661]
          Length = 623

 Score = 85.5 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 32/397 (8%), Positives = 103/397 (25%), Gaps = 85/397 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + +  +  +    +++ F +  + +Y            +NG+ I+   +    
Sbjct: 1   MMDNLRAASNHVVLKIILALIILSFVLTGVGNYLIGGNGDY-AAKVNGQEISRAQLENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           +  + ++                   ++ + A+ +L+ E+L     +  G+    + +  
Sbjct: 60  SNERSRQQQQLGEQFSQLAGNPAYIQQIRQQALSQLVDESLLTGYAKDLGLAISDDQIKQ 119

Query: 105 FFVQHAR---NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
                +    N       +   +++ G   + + + L  Q     ++             
Sbjct: 120 AIFNQSAFQTNGKFDNTKYLGLINQMGFTADQYAEALRKQLTTQQLIAAVTNTDFMLTGE 179

Query: 152 -----------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                     K      EI    ++ KN  +     R     + 
Sbjct: 180 TDALAALVSQERLVREATINVAALAAKQTVSAEEIKNYYEQNKNNFMSPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEESR-----------------------------LRLPKDCNKL 219
              +Q            ++ +                              +        
Sbjct: 240 AASMQETASEADIQSWYDQHQADYTQPQRSRYSIIQTKTEAEAQSALDAMKKGGDFAALA 299

Query: 220 EKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++      + G   +L       + ++   K +   +    +  G     + D +  
Sbjct: 300 KEKSADPISARNGGDMGWLEPDTTPDELKSAGLKEKGQLSGVIKSSVGFIVARLTDVQPQ 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             +   A+   ++A+    K      +  +K+   A 
Sbjct: 360 QIKPLAAVHDDIAAKVKQEKAIDAYYKLQQKVSDAAT 396


>gi|152993388|ref|YP_001359109.1| peptidyl-prolyl cis-trans isomerase [Sulfurovum sp. NBC37-1]
 gi|151425249|dbj|BAF72752.1| peptidyl-prolyl cis-trans isomerase [Sulfurovum sp. NBC37-1]
          Length = 282

 Score = 85.5 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 44/307 (14%), Positives = 96/307 (31%), Gaps = 41/307 (13%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
            +K++ T  V   F    +V+       S I  T+NG+ IT  D    ++         +
Sbjct: 1   MVKIIKTSLVAAAFMASSLVA-------SDILATVNGKNITKQDAEAFVSATAPNAHFSQ 53

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           L+  A + +I + L ++ +       +    +  F +                       
Sbjct: 54  LDP-AQKNMITQRLIEKVLFMELAKKEGIENDPEFKKALEKIKDELAVNLWM-------- 104

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                                +      + E     +K K+  +++ +++     + D K
Sbjct: 105 ------------------KKQLDSIVISDSEAKDFYEKNKDKFIQKEMVQARHILVKDEK 146

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
              +   + +    E  + +        +  +        G+     +  + P+F   + 
Sbjct: 147 TAKEIIKELKPLKGEALKKKF---IELAKSKSIGPSAPKGGELGKFAKGQMVPEFSKAVW 203

Query: 252 KSQNNTT--NPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKK 307
           K + +     P  TQ G   I + DK +        +K  + A     +  K  A   K+
Sbjct: 204 KLEKDQITLEPVKTQFGYHIILLEDKIEAQTVPYDKVKDQIIASLKQQEFAKKVAAIAKE 263

Query: 308 LRSNAII 314
           L+S A I
Sbjct: 264 LKSKAKI 270


>gi|325265502|ref|ZP_08132223.1| PPIC-type PPIASE domain protein [Clostridium sp. D5]
 gi|324029250|gb|EGB90544.1| PPIC-type PPIASE domain protein [Clostridium sp. D5]
          Length = 246

 Score = 85.5 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 28/281 (9%), Positives = 70/281 (24%), Gaps = 46/281 (16%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKI----NGELEKIAVQELIVETLKKQEIEKS 93
           MS  +   + GE IT  +    +  +   +     N +  +  +++LI            
Sbjct: 1   MSQEVLAVVAGEEITQEEFDAFMLNVPRDRQAYISNPQFRQQCLEQLIA----------- 49

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
                                L A+        Q      F        +    ++ + M
Sbjct: 50  -------------------LHLFAKMGGELKLDQTEKYEKFLVNAKRDILAQMAME-EIM 89

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                 + E  A  +  K    +  ++          +  +           E       
Sbjct: 90  KDITVSDDEASAYYEANKQQFSKGEMVSAKHILTDSEEKCSAVL--------ESITNGDK 141

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAI 272
              +   + +      + G         +  +F++        +   P  +Q G   I +
Sbjct: 142 SFEDAARESSMCPSSENGGDLGKFGRGQMVKEFEDAAFAAEPGHVVGPVQSQFGYHLIKV 201

Query: 273 CDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            +K +        +   +             +E +K+L+  
Sbjct: 202 EEKEEAATAPLNEVIESIKMNMLQQMQSSAYSEMIKELKDK 242


>gi|161504371|ref|YP_001571483.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|160865718|gb|ABX22341.1| hypothetical protein SARI_02482 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 623

 Score = 85.5 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 39/396 (9%), Positives = 101/396 (25%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     S+     +NG+ I+        
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL-IGGSNNYAAKVNGQEISRAQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                             +++ +++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGRFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                N    K    + E+ +   + K   +     R     + 
Sbjct: 180 TDELAALVSQQRVVREATIDVNALAAKQQATDQEVSSYYDQNKTRFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEESRLRL-----------------------------PKDCNKL 219
              +Q            ++   +                                     
Sbjct: 240 AATMQAPVSDADIQAYYDQHLDQFTQPERHRYSIIQTKTEDDAKAVLDALNKGEDFATLA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ES   P+ +N   K +   +    +  G     + D +  
Sbjct: 300 KEKSTDIISARNGGDMGWLEESATVPELKNAGLKEKGQISGVIKSSVGFLVARLDDVQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDAA 395


>gi|238911417|ref|ZP_04655254.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
          Length = 623

 Score = 85.5 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/396 (9%), Positives = 103/396 (26%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     S+     +NG+ I+        
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL-IGGSNNYAAKVNGQEISRAQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                             +++ +++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 149 ---------KNDFMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +   + +               + E+ +   + K   +     R     + 
Sbjct: 180 TDELAALVSQQRVVREAVIDVNALAAKQLVTDQEVSSYYDQNKVRFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                             +  +        
Sbjct: 240 AATMQAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFATLA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ES   P+ +N   K +   +    +  G     + D +  
Sbjct: 300 KEKSTDIISARNGGDMGWLEESATVPELKNAGLKEKGQISGVIKSSVGFLVARLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDAA 395


>gi|167465904|ref|ZP_02330993.1| peptidyl-prolyl cis-trans isomerase D, putative [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 353

 Score = 85.5 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/318 (10%), Positives = 95/318 (29%), Gaps = 14/318 (4%)

Query: 4   KVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTI-NGEVITDGDISKRIAL 62
           K+  +    +       + +I  +  +           +  T      +T G+++K I +
Sbjct: 2   KMQQNKPRILNKWILALITVILTVSVLSGCGKDKGDKEVVATYKENGKVTRGELNKLIGM 61

Query: 63  -------LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
                   K    +   ++  ++++I+    + + + +        V     Q  +    
Sbjct: 62  NNIFNPAYKQFAEDPAYQQSMLKQIIMFKEAEAKADDAAKKEADKKVQDQMKQMKQILDQ 121

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
                   L  + +     +  L          +            +    ++       
Sbjct: 122 QEGGADKVLKDEKMELKDIENILKQNFYASKEFEKQVTEDETKKAYDENLAQEPNAYEVE 181

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKA 234
               I   L       L+N+   + R  + +    +        ++++         GK 
Sbjct: 182 DVSHILIGLKDQEGKDLRNKDEAKTRALEVKGKLEKGEDFAALAKEYSDDPGSKDKGGKY 241

Query: 235 QYLLESDL----HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA 290
           + +  S +     P  Q      +N  ++P  T  G   + + +++    +  +K  + +
Sbjct: 242 EKVDYSQMMQFVEPFKQAAWSLEENKISDPVETDYGYHIMKVENRKKQTYDE-VKDQIRS 300

Query: 291 QNTPTKIEKHEAEYVKKL 308
           Q +  K+  +  + V KL
Sbjct: 301 QLSQKKMRDYIEQEVPKL 318


>gi|291286198|ref|YP_003503014.1| SurA domain protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290883358|gb|ADD67058.1| SurA domain protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 310

 Score = 85.5 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 89/291 (30%), Gaps = 22/291 (7%)

Query: 37  AMSSRIRTTINGEVITDGDIS----KRIALLKLQKINGELEKI-------AVQELIVETL 85
            + +R+   +  +VIT  ++     KR+  +       + E+        A+  L    +
Sbjct: 25  EIINRVYAVVGEKVITQYELETLNPKRLQYIYKNFEGDKREEELNKYYVAALDMLTNNYV 84

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
            +Q   + G+   S  V+    +      +  +  S  L         +K  + I  +  
Sbjct: 85  IEQAAAREGVRVSSREVDGAVKEIIEKNSIDEDKLSELLAASNQTMEQYKWSIKIDILKA 144

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
            ++   F  K    E +I    +          +    + ++ + +  ++          
Sbjct: 145 RLMSTVFRPKIIITEDDIKKYVEANAAALELSDMYELRIMTVDNKEQLDKA--------- 195

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQK 265
                      + + KF++  +  + G   ++  + L  + +N +   +   T P     
Sbjct: 196 LADFKDTGDFRSTVMKFSTSGNADNGGYLGWVELAFLDDEIRNTIAGKKG-LTEPLEDHG 254

Query: 266 GVEYIAICD-KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                 +   K         +  +       + ++    ++ + R   +I 
Sbjct: 255 SYRVFYVEGFKNKDNVTGDKRDSIVKTLQEERSKEIFDNWLAEKRKEILIQ 305


>gi|323489424|ref|ZP_08094653.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planococcus
           donghaensis MPA1U2]
 gi|323396918|gb|EGA89735.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planococcus
           donghaensis MPA1U2]
          Length = 296

 Score = 85.5 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/308 (11%), Positives = 92/308 (29%), Gaps = 41/308 (13%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +  ++    +   V  +S  S +       T +   IT  D+ + +           + +
Sbjct: 1   MKKSFLTFTLAASVLALSACSDSGDGEAIVTSDVGDITKNDLYEEMKT--------SIGE 52

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
            A+Q L++E +   + E +    D+   +              E+     D+    +N  
Sbjct: 53  QAIQILLIEKVLADKYEVTDKEVDAEYDSN------------KEELGESFDEFLAQNNQT 100

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
           ++          + +          + EI        +    E   R +L          
Sbjct: 101 EESYKKVIRLNLLQEKALTEGVEVTDEEIQDYY----DRQGTELNARHIL---------- 146

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK- 252
               ++     ++            E+ ++      + G   +     + P+F+      
Sbjct: 147 -VADEETANSLKKQLDEGADFAKLAEENSTDTGSGANGGNLDWFGPGAMVPEFEEAAYGL 205

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGE---IALKAYLSAQNTPTKIEKHEAE-YVKKL 308
             +  + P  ++ G   I + +KR +  +      K  L  +   +K ++      V +L
Sbjct: 206 EVDEISEPVASEYGFHIIQVLEKRQIEDQPALEDQKEELRTELALSKADQTTLLPKVAEL 265

Query: 309 RSNAIIHY 316
              A +  
Sbjct: 266 MKEANVKI 273


>gi|310817118|ref|YP_003965082.1| PPIc-type PPIase domain protein [Ketogulonicigenium vulgare Y25]
 gi|308755853|gb|ADO43782.1| PPIc-type PPIase domain protein [Ketogulonicigenium vulgare Y25]
          Length = 297

 Score = 85.5 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/287 (8%), Positives = 75/287 (26%), Gaps = 50/287 (17%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKS 93
            +      +  ++NG  IT G++    + L  Q        + +  L+ + +++Q + + 
Sbjct: 33  PAAPTRDTVIASVNGTDITLGEMLLAYSALPQQYRQLPA-DVLLPSLVDQMVQQQLLAEQ 91

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
                +                                         + +  + V++   
Sbjct: 92  VTEVPAAVEMAL------------------------------ANQRRELLSYEAVQDLLA 121

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
               +  ++   ++         EY    +L +  +                        
Sbjct: 122 DAVTDETLQAAYDRAFDGVTPGNEYSAAHILVATQEEADA-----------VIARLNAGE 170

Query: 214 KDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-----NNTTNPYVTQKGV 267
                 ++ +       + G+  +     +   F N + +       +  + P  +Q G 
Sbjct: 171 DFATVAQELSLDTGSGAAGGELGWFAPEMMVEPFANAVVELGEAGQFDTLSAPIESQFGF 230

Query: 268 EYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             I + + R         A +  +      +    E +  L + + +
Sbjct: 231 HIITVHEARPQSL--PTIAEIRTELEGQVRQDTLTEILNGLEAESEV 275


>gi|254420790|ref|ZP_05034514.1| PPIC-type PPIASE domain protein [Brevundimonas sp. BAL3]
 gi|196186967|gb|EDX81943.1| PPIC-type PPIASE domain protein [Brevundimonas sp. BAL3]
          Length = 309

 Score = 85.5 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/307 (11%), Positives = 81/307 (26%), Gaps = 51/307 (16%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL------QKIN 69
           L    + +  C       K+     R    +  E +   D+ +      L        + 
Sbjct: 3   LLAAVLTVAACSRGGGDDKAPEPGDRPVARVQDETVWASDVKREAVAQGLVGEGEPLDVT 62

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
            +L +  + E+I + L  +E E+  +                                  
Sbjct: 63  SDLFRRVLDEVIDQKLLAREAERRRLDASPLAQRRL------------------------ 98

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                 +    + +   +V++       +  ++   N+Q     T  E  +R +L     
Sbjct: 99  ------EATRERILGDMLVESVVNGAISDQAVQTLYNEQLRLAKTSEEIRVRLILSRTKP 152

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQN 248
                                +         + +  +    S G   Y     +   +  
Sbjct: 153 EAEA-----------VIGILGQGASFEAVAMERSVDEATRFSGGDLGYSTLDVMPQAYAG 201

Query: 249 LLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
            L+     +T  P+ T+ G   + + D+R              Q       +   + +++
Sbjct: 202 ALRDKPAGSTVGPFQTEGGWAVLRVEDRRKESP--PTLEQARPQIVRYLTYEGVRQLLEQ 259

Query: 308 LRSNAII 314
           LR  A +
Sbjct: 260 LRGKAKV 266


>gi|222094890|ref|YP_002528950.1| peptidylprolyl isomerase [Bacillus cereus Q1]
 gi|221238948|gb|ACM11658.1| protein export protein prsA [Bacillus cereus Q1]
          Length = 285

 Score = 85.5 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/304 (9%), Positives = 76/304 (25%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + ++S       S    T     IT  D  K++             K  
Sbjct: 4   KHIFIITALLSILMLSACGQKNDSDTVATATDSTITKSDFEKQLK--------DRYGKDM 55

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           + E++ + +  ++ + S    D            +   +   +                 
Sbjct: 56  LYEMMAQDVITKKYKVSDDDVDKELQKAKNQYGDQFKNVLKNNGLKDEADF--------- 106

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 107 --KNQIKFKLAMNEAIKKSITEKDVKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ ++            ++ +  +      G   Y     + P+F+    K   
Sbjct: 145 SDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYKLKV 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              +NP  +  G   I + DK++L     +K  +       +I       + ++     A
Sbjct: 205 GQISNPVASPNGYHIIKLTDKKELKPYDEVKDSIRKNLEEERISDPIFGKKLLQNELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|251790644|ref|YP_003005365.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Dickeya zeae
           Ech1591]
 gi|247539265|gb|ACT07886.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya zeae
           Ech1591]
          Length = 626

 Score = 85.5 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/398 (9%), Positives = 104/398 (26%), Gaps = 87/398 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + ++ +  +    ++  F +  +  Y            +NG+ IT   + + +
Sbjct: 1   MMDNLRAAANNVVLKIILALIIGSFVLTGVGDYLIRGSGDY-AAKVNGQEITRSQLEQGV 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIV-----------------ETLKK 87
              + ++                   +L    + +L+                  E +K+
Sbjct: 60  QNERSRQQEMLGDNFSALAANEGYMQQLRGQVLSQLVDETLVVQYAHNLGLNISDEQVKQ 119

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
                     ++   N  ++   R  GL+ + ++ FL KQ +     +       +    
Sbjct: 120 AIFSVPEFQTNNRFDNEKYLSQVRQLGLTPDAYAQFLRKQLLTQQLIRGLGNTDFVLQQE 179

Query: 148 VKNDFMLKYGN-------------------LEMEIPANKQKMKNITVREYLIRTVLFS-- 186
           + N   +   +                    + E+     + K   +     +       
Sbjct: 180 LDNLVAIAAQDRTVRTATIDLGARVKSQAVSDEEVKNFYDQNKARYLAPEQFKVSYIMLD 239

Query: 187 -----------------IPDNKLQNQGFVQKRIKDAE------------ESRLRLPKDCN 217
                              +         +++                 E   +      
Sbjct: 240 AASIMDKTKVDGNDIAAYYEQHKSEFTQPERKKYSVIQLKTEADAKAVLEQLKKGADFAA 299

Query: 218 KLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
             +  ++ I    + G   ++ +     + +    K +   ++   +  G   I + D +
Sbjct: 300 LAKDKSTDIVSRRNGGDLGWMDDGSTVDEIKQAGLKQKGQVSDVVKSSVGYLIIRLDDVQ 359

Query: 277 DLGGEI--ALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
               +    ++A LS +    K         +KL   A
Sbjct: 360 AQHVKELDEVRADLSEKVKREKALDAFYSLQQKLSEAA 397


>gi|224536050|ref|ZP_03676589.1| hypothetical protein BACCELL_00914 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522333|gb|EEF91438.1| hypothetical protein BACCELL_00914 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 454

 Score = 85.5 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/279 (11%), Positives = 91/279 (32%), Gaps = 12/279 (4%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKR--IALLKLQ 66
           + +F+       +  +  +     Y    +   +   +  E I   ++ +    AL + +
Sbjct: 1   MKNFMN-FKFVVLCALALMTGSAVYGQDNVIDEVVWVVGDEAILKSEVEEARMSALYEGR 59

Query: 67  KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY---FFVQHARNTGLSAEDFSSF 123
           K +G+   +  +E+ V+ L   +     I    + V                S E    +
Sbjct: 60  KFDGDPYCVIPEEIAVQKLFLHQAALDSIEVAESEVIQRVDQMTNMYIANIGSREKMEEY 119

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR-- 181
            +K         +  A + +    ++   + +      E+  + + +   ++     +  
Sbjct: 120 FNKTSSQIREALRENAREGLKVQRMQQKLVGEIKITPAEVRRHFKDLPQDSIPYIPTQVE 179

Query: 182 -TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLE 239
             ++   P   L+    V+ R+++  +   +          ++      ++ G+  +   
Sbjct: 180 VQIITQQPKIPLEEIEDVKSRLREYTDRVNKGESFSMLARLYSDDRGTAINGGEMPFTGR 239

Query: 240 SDLHPQFQN--LLKKSQNNTTNPYVTQKGVEYIAICDKR 276
             L P F N     +  N  +    ++ G   I + +KR
Sbjct: 240 GYLDPAFANVAFNLQDPNKVSKIVESEYGFHIIQLMEKR 278


>gi|300721987|ref|YP_003711267.1| peptidyl-prolyl cis/trans isomerase [Xenorhabdus nematophila ATCC
           19061]
 gi|297628484|emb|CBJ89049.1| peptidyl-prolyl cis-trans isomerase, for periplasmic folding of
           outer membrane proteins [Xenorhabdus nematophila ATCC
           19061]
          Length = 626

 Score = 85.5 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/401 (9%), Positives = 104/401 (25%), Gaps = 90/401 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y S    S     +NG+ I+  ++ +  
Sbjct: 1   MMDNLRTAANGPVLKIVLALIILTFLLTGVTGYLSSESGSY-AAKVNGQTISRAELEQAF 59

Query: 61  ----------------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
                           ALL  ++   ++ + ++  LI   L +Q   K G++   + V  
Sbjct: 60  LQEKDVLQERLGDQFSALLSDEQQVRQIRRQSLDRLINTVLIEQYANKLGLSASDDQVAE 119

Query: 105 FFVQHA------RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY-- 156
                +      +      +D+ + L +  I  +HF   +  + I   +++     +   
Sbjct: 120 EIRNTSFLQTDGKFDNKKYQDYLNMLARSNISPDHFAAQVRKELINRQLMQVLMGSEIAL 179

Query: 157 -------------------------------GNLEMEIPANKQKMKNITVREYLIRTVLF 185
                                             + E+                ++    
Sbjct: 180 PTEIKQEVMLILQERTVRFATLELKSLEAQQKVTDEELKNYYSANSKRFTVPEKVKISYI 239

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA---------------------- 223
            +          V +   +             + +K++                      
Sbjct: 240 KMDAVDELKNITVSEADIEKYYKNNLSKYTTPEQKKYSFIQLVSDSAAKSVLDELNKGAD 299

Query: 224 ----------SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAIC 273
                      K      G   ++ ES L  + ++     +   +             + 
Sbjct: 300 FSQLAAEKSTDKFSAQKGGDLGWMEESSLPNELKSANLTQKGQLSEIVKLSNAYAIFRLD 359

Query: 274 DKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
           D +   +     + A +       K      +  +K+   A
Sbjct: 360 DIKPQVIKPLADIHAEIDKIVKQEKSVDAFYDLQRKVSDAA 400


>gi|255534611|ref|YP_003094982.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteriaceae
           bacterium 3519-10]
 gi|255340807|gb|ACU06920.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteriaceae
           bacterium 3519-10]
          Length = 467

 Score = 85.5 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/280 (9%), Positives = 81/280 (28%), Gaps = 14/280 (5%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMS-----SRIRTTINGEVITDGDISKRIALLK 64
              +     + +L  F +          +        I   +  E+I + DI  +    +
Sbjct: 11  KQIMSKHIKFALLTSFILTFFGVQTHAQLKTGDLVDGIAVVVGNEIILESDIEDQANYAQ 70

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY--FFVQHARNTGLSAEDFSS 122
            Q      +   V+ +I   L   E ++  +  + +         ++A+  G   ++ + 
Sbjct: 71  QQGAAVADKCEFVESIINNKLLIYEAKRDTLIENRSESIKETANQKYAQILGQFPDEKTM 130

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML-----KYGNLEMEIPANKQKMKNITVRE 177
               +       K  +          +  F            E+    N  + +   V++
Sbjct: 131 LSTYKFRTSYEMKNAIEKIDTDNYYGQMKFGRITEKADVTPNEVTDFFNTYQFQLPEVKD 190

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQY 236
            +  + +   P     ++  +  R+   +          ++   ++       + G  + 
Sbjct: 191 EVSLSQITMYPKLTDAHKDEIIARLNKIKADIAAGESFESQARIYSEDPGSAATGGLYKN 250

Query: 237 LLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDK 275
           +    +   F+       +   + P  ++ G   I +  K
Sbjct: 251 VARGKMVKPFEAAALNLQEGELSEPVESEFGYHLIQLVKK 290


>gi|15805112|ref|NP_293797.1| peptidyl-prolyl cis-trans isomerase [Deinococcus radiodurans R1]
 gi|6457733|gb|AAF09662.1|AE001870_1 peptidyl-prolyl cis-trans isomerse, putative, PpiC family
           [Deinococcus radiodurans R1]
          Length = 677

 Score = 85.5 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/322 (12%), Positives = 86/322 (26%), Gaps = 34/322 (10%)

Query: 19  YFVLIIFCIVPIVSYKSW--------AMSSRIRTTINGEVITDGDIS--KRIALLKLQKI 68
             + +   +V  ++Y+                   +NG+ +T   +   +R + L   + 
Sbjct: 34  LLIGLSVLLVAGMAYQFTPNVGSLFNRQEGTPVIKVNGDAVTAEQLESARRASPLLADEP 93

Query: 69  NGELEKIAVQELIVETLKKQEIEK--SGITFDSNTVNYFFVQHARNTGLSAED-FSSFLD 125
              L   A   L+ + + +  +      +      VN    +   +  L+    ++  L 
Sbjct: 94  GSVLADDAKVYLVSQAIDRGAVLSGLKDVQVSRADVNAEVQKVRESNKLTDNKAWTDALQ 153

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
             G+ D  F+  +  Q  +               + E+ A     K+    E  I     
Sbjct: 154 SNGLTDASFRTQVRQQLAYQRKTDELRKAVPAPTDAELKAYYDLNKSKYQAEPQIVGRQI 213

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ 245
                         K    +  ++ R   D   L    S  +    G    L  +   P 
Sbjct: 214 V----------VTDKAKAQSLLAQARGGADFAVLASANSTENKDRGGALAPLDGNQPRPV 263

Query: 246 F---------QNLLKKSQNNTTNPYVTQKGVEYIAICD--KRDLGGEIALKAYLSAQNTP 294
                     +   +      T+   +      + +              K  + +    
Sbjct: 264 LQAALPTAVGEAAFRLKNGGLTDVIESGGKFYIVKVEKFLPGQPKTFEQAKTDVVSAVRQ 323

Query: 295 TKIEKHEAEYVKKLRSNAIIHY 316
            K      ++   LR NA + Y
Sbjct: 324 QKQNAALEKWSDDLRKNAQVEY 345


>gi|226941162|ref|YP_002796236.1| peptidyl-prolyl cis-trans isomerase [Laribacter hongkongensis
           HLHK9]
 gi|226716089|gb|ACO75227.1| Probable peptidyl-prolyl cis-trans isomerase [Laribacter
           hongkongensis HLHK9]
          Length = 243

 Score = 85.5 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 78/278 (28%), Gaps = 46/278 (16%)

Query: 44  TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            T+NG  IT+  I  +           +     +Q+L++ TL  Q+  ++G+        
Sbjct: 3   ITVNGVEITEEMIKAQQDNF---ADASDPRDATIQQLVLHTLLLQKAREAGLDTSDEAA- 58

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
                                              AI ++    ++ +   +    E   
Sbjct: 59  -----------------------------------AINALLEQSIRYEPATEATCRE--- 80

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
             +    +       +   +LF + D++L       K      E +    +  +     +
Sbjct: 81  FYDTYPERFSQGESAVASHILFPLGDDELAKVVMRGKAEGVLAEVQAEPSRFADLARVHS 140

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP--YVTQKGVEYIAICDKRD--LG 279
           +       G         +   F++ +  +      P    TQ G   I + D+      
Sbjct: 141 TCPSGREGGSLGEFGRGQMVKPFEDAVFSTPAGEITPQLVETQFGFHIIQVQDRTQGGAV 200

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
               +K  L    T     +   EY+  L   A I  Y
Sbjct: 201 AFDDIKERLQQYLTDLAARQAMHEYLSGLVDAAKIEGY 238


>gi|168465546|ref|ZP_02699428.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195631887|gb|EDX50407.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 623

 Score = 85.5 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/396 (9%), Positives = 102/396 (25%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     S+     +NG+ I+        
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL-IGGSNNYAAKVNGQEISRAQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGHMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                             +++ +++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                N    K    + E+ +   + K   +     R     + 
Sbjct: 180 TDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                             +  +        
Sbjct: 240 AATMQAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFATLA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ES   P+ +N   K +   +    +  G     + D +  
Sbjct: 300 KEKSTDIISARNGGDMGWLEESATVPELKNAGLKEKGQISGVIKSSVGFLVARLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKPLSEVRDDIAAKVKQEKALDTYYALQQKVSDAA 395


>gi|149182999|ref|ZP_01861454.1| post-translocation molecular chaperone [Bacillus sp. SG-1]
 gi|148849283|gb|EDL63478.1| post-translocation molecular chaperone [Bacillus sp. SG-1]
          Length = 324

 Score = 85.5 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/314 (10%), Positives = 93/314 (29%), Gaps = 40/314 (12%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +  +I  LT      +  +    + +    +S +        +T  ++   +      + 
Sbjct: 1   MKKWI--LTMSLAAGVITLSACNNAEDNGGNSEVVAETKAGDVTKEELYTSMK-----EK 53

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
                + A+QEL+++ +   + E +    D                 + +      D   
Sbjct: 54  FTPQMEQALQELVLKKVLGDKYEVTEEEVD------------EKLNEAKDQLGPQFDMFL 101

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
              N  ++          + +          E E+                     +   
Sbjct: 102 SQYNLNEESFREYLELQLLQEKAATADIEVSEDELQEYYDN---------------WKPE 146

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYL----LESDLH 243
                     ++  K+ ++      K  +  +++++      + G   ++     ++ + 
Sbjct: 147 IEVRHILVDDEETAKEVKQKLADGAKFEDLAKEYSNDPGSAENGGSLGWVDYEGRQNFVP 206

Query: 244 PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE-KHEA 302
              + L K      + P  TQ G   I + DK++      +K  L      +K+  +   
Sbjct: 207 EFSEALEKLKTGKVSEPVKTQYGFHIIEVTDKKEKNSFDEMKDELEKSLKLSKVTPEKIQ 266

Query: 303 EYVKKLRSNAIIHY 316
           + +K++  +A +  
Sbjct: 267 QAMKEIVEDAGLEI 280


>gi|121997400|ref|YP_001002187.1| hypothetical protein Hhal_0599 [Halorhodospira halophila SL1]
 gi|121588805|gb|ABM61385.1| conserved hypothetical protein [Halorhodospira halophila SL1]
          Length = 524

 Score = 85.5 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/214 (10%), Positives = 60/214 (28%), Gaps = 16/214 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +   +  +I  +   F+ + F  +    Y        +   ++GE I    I + +
Sbjct: 1   MLQAIRDGIKGWIAWVIIGFIALPFIFMGGYEYFGGGQDDAVVARVDGEEIPRSQIDQAV 60

Query: 61  ALLKLQKIN-------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
              + Q                  L + A+++LI E L    + K G+      V     
Sbjct: 61  ERQRAQLREMFGGDLPDGAFDGAALRREALEQLIDEQLLHAYVGKQGLRVTDQEVAQTIR 120

Query: 108 QHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
                      S   + + L++  +    ++  +          +  F            
Sbjct: 121 GQEIFHEGGQFSRARYQTLLERNRLTPEDYEGLVRRDLKADQFQQAVFASSISTPSQLER 180

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
             + + ++ +     I    ++   +    +   
Sbjct: 181 LVRLQDESRSFSYVEIDADRYTDEVSVDDAEVEA 214



 Score = 39.3 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 8/91 (8%), Positives = 26/91 (28%), Gaps = 4/91 (4%)

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQ-KGVEYIAICDKRDLGGE- 281
           S   D   G+      S++  +  +         ++           + + + R+   + 
Sbjct: 321 SDWIDRDGGE-GIGDLSEVVEEAFSEDVLEHGYNSDLIRVDEDRYLVVRLLEHREAEPKP 379

Query: 282 -IALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
              +   +  Q    +      E  ++L + 
Sbjct: 380 LEEVADTIREQLRQERAADLARERAEELVAR 410


>gi|224534854|ref|ZP_03675423.1| basic membrane protein [Borrelia spielmanii A14S]
 gi|224513794|gb|EEF84119.1| basic membrane protein [Borrelia spielmanii A14S]
          Length = 336

 Score = 85.5 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/334 (14%), Positives = 102/334 (30%), Gaps = 37/334 (11%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTIN---GEVITDGDISKRIALLKLQKING-- 70
           + ++  L+I   V I S+      +     IN    E+IT      ++ + K  +     
Sbjct: 1   MKSFLFLVILGTVGINSFAQ----NTPVAIINLYKNEIITKTSFDSKVDIFKKTQGRDLT 56

Query: 71  -ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
              +K  +Q LI + L  QE  K GI    + V             + E     ++KQG 
Sbjct: 57  TAEKKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRTQFGLVNFTDEQIKQMIEKQGT 116

Query: 130 GDNHFKQYLAIQSIWPDVV----KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
                   +        ++    +  F       E EI    +  K   V   + R    
Sbjct: 117 NWGELLSSMKRSLSSQKLILKQAQPRFSEVKTPSEKEIIEYYEANKTKFVNPDISRVSHV 176

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDL-- 242
                  +    + +      + R +       + K+++        G   +L   D   
Sbjct: 177 FFSTKDKKRSDVLDQAKNILSQIRSKKITFEEAVRKYSNDESSKAKNGDLGFLSRDDQNA 236

Query: 243 -----HPQFQNLLKKSQNNTTNPYVTQKGVEYIAI-----------CDKRDLGGEIALKA 286
                    + +   ++ + ++P  +++G   + +            DK     ++ +K 
Sbjct: 237 QNLLGSDFIKEVFNFNKGDISSPIASKEGFHIVKVTEKYAQRFLGLNDKVSPTIDLIVKD 296

Query: 287 YLSAQNTP----TKIEKHEAEYVKKLRSNAIIHY 316
            +            + + + +   KL  +A I  
Sbjct: 297 AIRNNMVNIQQQQIVVQVQQDVYGKLNKSANIQI 330


>gi|260062279|ref|YP_003195359.1| putative exported peptidyl-prolyl cis-trans isomerase
           [Robiginitalea biformata HTCC2501]
 gi|88783841|gb|EAR15012.1| putative exported peptidyl-prolyl cis-trans isomerase
           [Robiginitalea biformata HTCC2501]
          Length = 481

 Score = 85.1 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/283 (10%), Positives = 79/283 (27%), Gaps = 14/283 (4%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQ--KINGELEKIAVQELIVETLKKQEIEKSGITF 97
             I   +   VI D D+ K +  LK Q        +   + +L+ + L   +  +  I  
Sbjct: 58  DGIAAVVGDYVILDSDVEKTMIDLKNQGATDAEIDDCSLLGKLMEDRLYAHQAVQDSILV 117

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS----IWPDVVKNDFM 153
             + V     ++ +            L           +    Q     +    ++   +
Sbjct: 118 SDDEVYAQSDRYLQQLEQRLGSMEKLLQFYNKESAEDLREELFQINKLQMLSQKMQQKVV 177

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                   E+    + +       +     +  I       +   QK I      +  + 
Sbjct: 178 GDIKVTPEEVRQFFRSIPEDEKPVFGAELEIAQIVIKPEVPEAEKQKVIDQLNAIKADVE 237

Query: 214 KDCNKLEKFA-----SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGV 267
            +       A      +    + G      ++    +F+++     +   + P+ TQ G 
Sbjct: 238 DNDANFRVKAILYTEDEASRSNGGMYTMTRQTQFVKEFKDVAFSLQEGEISEPFETQFGF 297

Query: 268 EYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
             + +   R    +      +  +     +E+   + +  +R 
Sbjct: 298 HILMVEKIRGQELD-VRHILIRPEVPQAALEEARKK-LDTIRQ 338


>gi|257094858|ref|YP_003168499.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047382|gb|ACV36570.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 269

 Score = 85.1 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 79/274 (28%), Gaps = 47/274 (17%)

Query: 45  TINGEVITDGDISKRIALLKLQKING--ELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
           T+NG  I+    +  +A  + Q      EL+K   +ELI   L  QE +K G+    +  
Sbjct: 38  TVNGVAISQTVANAFVAEQQAQGAPDSPELKKAVREELIRRELLVQEAKKLGLDKKPDVA 97

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                                        V++       + E  
Sbjct: 98  AQA------------------------------DLARQAIYIRAFVQDYVKKNPISDEQA 127

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
             A ++    +   EY +R +L    D+       ++K             K     ++ 
Sbjct: 128 KAAYERMKSQMGSTEYKVRHILVEKEDDAKTIIVNLKK-----------GAKFDELAKQS 176

Query: 223 ASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDKRDLGG 280
                    G   +   ++    F   +   ++   T  P  T  G   I + D R L  
Sbjct: 177 KDPGSKEKGGDLGWSSTANYVKPFGDAVAGLAKGKFTETPVKTDFGYHVILVEDSRPLTP 236

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                  +  Q      ++   +YV +L+  A I
Sbjct: 237 --PPFDQIKPQINQRLQQEQLQKYVAELQKKAKI 268


>gi|226940617|ref|YP_002795691.1| signal peptide protein [Laribacter hongkongensis HLHK9]
 gi|226715544|gb|ACO74682.1| Probable signal peptide protein [Laribacter hongkongensis HLHK9]
          Length = 257

 Score = 85.1 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 84/275 (30%), Gaps = 48/275 (17%)

Query: 46  INGEVITDGDISKRIALLKLQKING--ELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           ING  I    I   +  +  Q      +L + A   +++  L +QE  K G+    +  N
Sbjct: 26  INGTFIPQARIDSAVKQMTAQGQPDSPQLRQAARDRVVLTELLRQEAMKKGLDKSPDYRN 85

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
                 +                                +    V++       +     
Sbjct: 86  ELENLQSA------------------------------LLANLYVRDFMKSHPVSEADVR 115

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
               +    +  +EY  R +L    +   +    ++K             +  +   +++
Sbjct: 116 AEYDRMKVQMARKEYRARHILVPSQEEAAKVLEQLKK-----------GARFEDLARQYS 164

Query: 224 SKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAICDKRDLGG 280
                  + G   ++  + L P+F   + K ++   T  P  +Q G   I + D ++   
Sbjct: 165 IDTGSKANGGDLGFVDPAQLVPEFSGAMTKLAKGQITQTPVKSQFGWHIIQLTDTKEA-- 222

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +      + AQ       +    Y+ +L++ A + 
Sbjct: 223 DFPALDAVRAQLEQQIQGQRFDAYIARLKAQAKVQ 257


>gi|327398211|ref|YP_004339080.1| SurA domain-containing protein [Hippea maritima DSM 10411]
 gi|327180840|gb|AEA33021.1| SurA domain protein [Hippea maritima DSM 10411]
          Length = 287

 Score = 85.1 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 91/284 (32%), Gaps = 20/284 (7%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKS 93
                  +I  T+NG+ IT  ++       ++  +N       + E+I + L +Q     
Sbjct: 22  SEAKTVDKIIATVNGKPITTYELQNLAGFYRVNNLNT-----LLNEVIDDYLIRQYANNM 76

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
           GI      V  +  Q A    LS ++F + L +  I  N++K+ + ++       +  F+
Sbjct: 77  GIIVSDEDVEKYIQQMAEANNLSEDEFLAKLKESNIDLNYYKEGIKLRLYRIKFARRVFL 136

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                 + +I       K+    +  +  +      +         K++    +      
Sbjct: 137 SSIKITDKDIENYYNLHKDKFKGKSKVLVLSIITLGDL-----ETAKKVYSLLKKGKSFE 191

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAIC 273
              NK          V I               + LL    N  T+   +      + + 
Sbjct: 192 DLLNKYSTTKESTRKVPIETLN-------PYLQKKLLSLKPNQYTDIIQSAGKFYIVKLL 244

Query: 274 DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
              +     ++K  +       +I      ++K +R+ + I  +
Sbjct: 245 GTEEG---ESIKDTIRNTLIDQQITAKLKSWLKMIRARSDIEVF 285


>gi|319900078|ref|YP_004159806.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacteroides
           helcogenes P 36-108]
 gi|319415109|gb|ADV42220.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacteroides
           helcogenes P 36-108]
          Length = 455

 Score = 85.1 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 86/272 (31%), Gaps = 11/272 (4%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKR--IALLKLQKINGELE 73
                +  +  +     Y    +   +   +  E I   ++ +    AL + +K + +  
Sbjct: 7   FKFVVLFALTLLAGSTVYGQDNVIDEVVWVVGDEAILKSEVEEARMSALYEGRKFDRDPY 66

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNY---FFVQHARNTGLSAEDFSSFLDKQGIG 130
            +  +E+ V+ L   +     I      V     +      +   S E    + +K    
Sbjct: 67  CVIPEEIAVQKLFLHQAALDSIEVAEAEVLQRVDYMTNMYISNIGSREKMEEYFNKTSSQ 126

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR---TVLFSI 187
                +  A + +    ++   + +      E+    + +   ++     +    ++   
Sbjct: 127 IRETLRDNAREGLKVQKMQQKLVGEIKVTPAEVRRYFKDLPQDSIPYIPTQVEVQIITLQ 186

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQF 246
           P    +    V++R+++  +   +          ++      +  G+  +     L P +
Sbjct: 187 PKIPQEEIEDVKRRLREYTDRVNKGESFSMLARMYSEDRGSAIRGGEIDFSGRGMLDPAY 246

Query: 247 QNLLKKSQN--NTTNPYVTQKGVEYIAICDKR 276
            ++    Q+    +    ++ G   I + +KR
Sbjct: 247 ASVAFNLQDPTKVSKIVESEYGFHIIQLIEKR 278


>gi|205351763|ref|YP_002225564.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205271544|emb|CAR36362.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326626798|gb|EGE33141.1| Peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 623

 Score = 85.1 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/396 (9%), Positives = 102/396 (25%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     S+     +NG+ I+        
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL-IGGSNNYAAKVNGQEISRAQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNLLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                             +++ +++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                N    K    + E+ +   + K   +     R     + 
Sbjct: 180 TDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                             +  +        
Sbjct: 240 AATMQAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFATLA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ES   P+ +N   K +   +    +  G     + D +  
Sbjct: 300 KEKSTDIISARNGGDMGWLEESATVPELKNAGLKEKGQISGVIKSSVGFLVARLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDAA 395


>gi|219684844|ref|ZP_03539786.1| basic membrane protein [Borrelia garinii PBr]
 gi|219671789|gb|EED28844.1| basic membrane protein [Borrelia garinii PBr]
          Length = 336

 Score = 85.1 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 105/334 (31%), Gaps = 37/334 (11%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTIN---GEVITDGDISKRIALLKLQKING-- 70
           + ++  L+I  I+ I S+      +     IN    E+IT      ++ + K  +     
Sbjct: 1   MKSFLFLVILGIMGINSFAQ----NTPVAIINLYKNEIITKTGFDSKVDIFKKTQGRDLT 56

Query: 71  -ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
              +K  +Q LI + L  QE  K GI    + V            L+ E     ++KQG 
Sbjct: 57  AAEKKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRTQFGLVNLTDEQIKQMIEKQGT 116

Query: 130 GDNHFKQYLAIQSIWPDVV----KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
                   +        +V    +  F       E EI    +  K   V   + R    
Sbjct: 117 NWGELLASMKRSLSSQKLVLKQAQPRFSEVKTPSEKEIVEYYEANKTKFVNPDISRVSHV 176

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLH- 243
                  +    + +      + R +       + K+++        G   +L   D + 
Sbjct: 177 FFSTKDKKRSDVLDQAKNILSQIRSKKITFEEAVRKYSNDESSKAKNGDLGFLSRGDQNA 236

Query: 244 ------PQFQNLLKKSQNNTTNPYVTQKGVEYIAI-----------CDKRDLGGEIALKA 286
                    + +   ++ + ++P  +++G   I +            DK     ++ +K 
Sbjct: 237 QNLLGADFIKEVFNFNKGDISSPIASKEGFHIIKVTEKYAQRFLGLNDKVSPTTDLIVKD 296

Query: 287 YLSAQNTPT----KIEKHEAEYVKKLRSNAIIHY 316
            +            + + + +   KL  +A I  
Sbjct: 297 AIRNNMVNIQQQQIVVEVQQDVYSKLNKSANIQI 330


>gi|29349256|ref|NP_812759.1| peptidyl-prolyl cis-trans isomerase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253570398|ref|ZP_04847807.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 1_1_6]
 gi|298384796|ref|ZP_06994355.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides sp.
           1_1_14]
 gi|29341164|gb|AAO78953.1| peptidyl-prolyl cis-trans isomerase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251840779|gb|EES68861.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 1_1_6]
 gi|298261940|gb|EFI04805.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides sp.
           1_1_14]
          Length = 460

 Score = 85.1 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/280 (10%), Positives = 83/280 (29%), Gaps = 13/280 (4%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI--ALLKLQ 66
           +  F+        L++     +V+Y    +   +   +  E I   D+ +    AL   +
Sbjct: 1   MKKFVN-FRFIVTLVLAVFANVVTYAQDNVIDEVVWVVGDEAILKSDVEEARMDALYNGR 59

Query: 67  KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
           +  G+   +  +E+ V+ L   + +   I      +                      + 
Sbjct: 60  RFEGDPYCVIPEEIAVQKLFLHQAKLDSIEVSEAEIIQRVDMMTNMYIQQIGSKEKMEEY 119

Query: 127 QGIGDNHFKQYLAIQS---IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                   ++ L   +   +    ++   +        E+    + +   ++     +  
Sbjct: 120 FNKTATQIRETLRENARDGLTVQKMQQKLVGDIKVTPAEVRRYFKDLPQDSIPYIPTQVE 179

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-----SKIHDVSIGKAQYLL 238
           +  I          ++   +   +   R+ K        A      K   +  G+  ++ 
Sbjct: 180 VQIITLQPKIPIAEIEDVKRRLRDYTDRVTKGEIDFSTLARLYSEDKASAIKGGELDFMG 239

Query: 239 ESDLHPQFQNLLKKSQN--NTTNPYVTQKGVEYIAICDKR 276
              L P + N+    Q+    +    ++ G   I + +KR
Sbjct: 240 RGMLDPAYANVAFSLQDPKKVSKIVESEFGYHIIQLIEKR 279


>gi|107027409|ref|YP_624920.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia AU 1054]
 gi|116693880|ref|YP_839413.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia HI2424]
 gi|105896783|gb|ABF79947.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia AU 1054]
 gi|116651880|gb|ABK12520.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia HI2424]
          Length = 276

 Score = 85.1 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 89/307 (28%), Gaps = 55/307 (17%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           +L I  +   +S    A ++    T+NG  IT  D+   +     Q  + ++ +    +L
Sbjct: 10  LLTIVALAGALSGPVHAQTAETVATVNGTPITQADVDTLLR-ASGQPDSPQIRQAIKNQL 68

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I   L +Q  EK+                                          Q   +
Sbjct: 69  ITRVLVQQAAEKANYADKPEVKAA------------------------------MQQAKV 98

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
            +     +++    +    E       + +  +   EY  R ++   P         ++ 
Sbjct: 99  TAEVQLYLRDHVKPEPVTDEQVKARYDELVAALGKNEYKPRVIVVKDPVAAATVLSELKA 158

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD---------LH-PQFQNLL 250
                               +++      + G+  ++  +          L  P  Q L 
Sbjct: 159 -----------GKSFDGLARQYSLAPSRDTGGELPWVSFNTPAAEGKTAGLPLPVAQALE 207

Query: 251 KKSQNNTTNPYVTQKGV-EYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
           K +   TT   +   GV   + +  KR   + G    K  L  Q      EK  A+ +  
Sbjct: 208 KLTVGATTKDSIPVDGVRAIVKLDAKRPTQVPGFETAKPTLQQQLQAIAAEKASAQMIGN 267

Query: 308 LRSNAII 314
           L  +A I
Sbjct: 268 LLKDAKI 274


>gi|51598371|ref|YP_072559.1| basic membrane protein [Borrelia garinii PBi]
 gi|51572942|gb|AAU06967.1| basic membrane protein [Borrelia garinii PBi]
          Length = 336

 Score = 85.1 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 105/334 (31%), Gaps = 37/334 (11%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTIN---GEVITDGDISKRIALLKLQKING-- 70
           + ++  L+I  I+ I S+      +     IN    E+IT      ++ + K  +     
Sbjct: 1   MKSFLFLVILGIMGINSFAQ----NTPVAIINLYKNEIITKTGFDSKVDIFKKTQGRDLT 56

Query: 71  -ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
              +K  +Q LI + L  QE  K GI    + V            L+ E     ++KQG 
Sbjct: 57  AAEKKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRTQFGLVNLTDEQIKQMIEKQGT 116

Query: 130 GDNHFKQYLAIQSIWPDVV----KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
                   +        +V    +  F       E EI    +  K   V   + R    
Sbjct: 117 NWGELLASMKRSLSSQKLVLKQSQPRFSEVKTPSEKEIVEYYEANKTKFVNPDISRVSHV 176

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLH- 243
                  +    + +      + R +       + K+++        G   +L   D + 
Sbjct: 177 FFSTKDKKRSDVLDQAKNILSQIRSKKITFEEAVRKYSNDESSKAKNGDLGFLSRGDQNA 236

Query: 244 ------PQFQNLLKKSQNNTTNPYVTQKGVEYIAI-----------CDKRDLGGEIALKA 286
                    + +   ++ + ++P  +++G   I +            DK     ++ +K 
Sbjct: 237 QNLLGADFIKEVFNFNKGDISSPIASKEGFHIIKVTEKYAQRFLGLNDKVSPTTDLIVKD 296

Query: 287 YLSAQNTPT----KIEKHEAEYVKKLRSNAIIHY 316
            +            + + + +   KL  +A I  
Sbjct: 297 AIRNNMINIQQQQIVVEVQQDVYSKLNKSANIQI 330


>gi|242277701|ref|YP_002989830.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           salexigens DSM 2638]
 gi|242120595|gb|ACS78291.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           salexigens DSM 2638]
          Length = 633

 Score = 85.1 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 50/159 (31%), Gaps = 4/159 (2%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN-KLQNQGFVQKRIKDAEESRL 210
                   E++      K       +   R +L ++ +N   ++    +K+IK       
Sbjct: 242 INETVTPEEIKAYYEANKETFQQEAQVNARHILITVDENASDKDVAAAEKKIKKVLAKAK 301

Query: 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEY 269
                    +K++        G+  +     +   F+       +   + P  T+ G   
Sbjct: 302 SGQDFGKLAKKYSEGPSSSKGGELGWFGRGAMVKPFEEAAFALKKGEISEPVRTRFGWHL 361

Query: 270 IAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVK 306
           I I D R+ G +    +K  +++     K      + + 
Sbjct: 362 IKIDDVREAGQKDIDQVKDEINSLIAQEKAADSITDKLD 400



 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/319 (7%), Positives = 88/319 (27%), Gaps = 19/319 (5%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +   +    ++ +F      +      +  +   +N + +   +  +  
Sbjct: 1   MMDILRQNAQSWGIKIAFGIIIAVFIF-AFGAGGFNGNTDPVIAYVNDQPVPTQEFMQVY 59

Query: 61  ------------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
                        L   Q  + E +K  +++L+ + L + E EK G++  ++ ++Y   +
Sbjct: 60  RETAEALRAQNPNLDSDQLQSPEFKKAVLEQLVSQKLLEAEAEKLGLSVSNSELSYSISK 119

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
                    +   +                        ++ +              A+ +
Sbjct: 120 IPAFADKDGKFDMNLYQAFLQSRAMSAATFENDMRNSALI-SKLQEYVTMPVKPTEADAR 178

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
            + +    +  I     S  D     +   ++     + +  +       + K+ +   +
Sbjct: 179 ALFDSAAEKVQIDYYYVSGADFVKNIKISDKQIEDFYKANPDKFTIPARSVVKYIAFTPE 238

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
                   + E+    + +   + ++               I + +        A +  +
Sbjct: 239 ELS-----INETVTPEEIKAYYEANKETFQQEAQVNARHILITVDENASDKDVAAAEKKI 293

Query: 289 SAQNTPTKIEKHEAEYVKK 307
                  K  +   +  KK
Sbjct: 294 KKVLAKAKSGQDFGKLAKK 312



 Score = 51.6 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/256 (9%), Positives = 72/256 (28%), Gaps = 6/256 (2%)

Query: 66  QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
           QK   +++      +  E       +K     D         + +   G++ +       
Sbjct: 372 QKDIDQVKDEINSLIAQEKAADSITDKLDHAIDLLASGMKLDKVSEELGIAFKKSEQATV 431

Query: 126 KQGIGDNHFKQYLAIQSIW-PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           +         +  A   I  P     D  +      + +        +++  +   + + 
Sbjct: 432 ENLSRAFGMTESAAQTIIALPKGNATDMPVAIDGGYILVEKEADVPPSLSPLKDQKQDIE 491

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             +   +  N    +      + S  +      K+ K   K  +       ++    ++P
Sbjct: 492 SFLSQQQAMNLAKAKALALMGQLSNEKTEAAALKVIKKDLKTSEPFGRD-GFVPGLGMNP 550

Query: 245 QFQNLLKKSQNN--TTNPYVTQKGVEYIAICDKRDLGGEIAL--KAYLSAQNTPTKIEKH 300
           +       ++ +   +  +    G     + ++     E     K  +       +  + 
Sbjct: 551 KLAQAALAAKKDQWMSEVFELPGGFIVARVDERIPPKEEAWAAQKDMVMDAIFQQRANEV 610

Query: 301 EAEYVKKLRSNAIIHY 316
              ++ +LRS A + Y
Sbjct: 611 FGAFLNELRSKAKVEY 626


>gi|56963292|ref|YP_175023.1| protein export protein PrsA [Bacillus clausii KSM-K16]
 gi|56909535|dbj|BAD64062.1| protein export protein PrsA [Bacillus clausii KSM-K16]
          Length = 345

 Score = 85.1 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/304 (8%), Positives = 82/304 (26%), Gaps = 25/304 (8%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +       +    + + +  S    + +        +T  D+              + ++
Sbjct: 1   MKKLVLAAVGAVSLTVFAGCSDDSENAVVEIDGETALTKDDLYDSFK------ETQQAQQ 54

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             V ++   +          +    + +N        +  + +++               
Sbjct: 55  QFVNQM---STALLTRASEDMDISDDEINEMIEDLKSDYNVESDEDLVNFFTNSGYPLDN 111

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
              L  + I P++       +  +   E      +       +   R +L          
Sbjct: 112 IDQLKEELIVPEIAMKQLSAEGVDTSDETLQTYFEENQEQFEQITARHIL---------- 161

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQF-QNLLKK 252
               ++   + ++            E++++      + G         + P+F +     
Sbjct: 162 -VEDEETANEVKDRLNDGEDFAELAEEYSTDTQSAANGGDLGTFDREQMVPEFSEVAFSL 220

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             N+ ++P  +Q G   I + DK  L      + ++  Q    + +      + +L    
Sbjct: 221 DVNDISDPVESQFGFHIIEVTDK--LDTFEDNRDFVYDQIISEQGKD-FTTVLGELIDKY 277

Query: 313 IIHY 316
            +  
Sbjct: 278 NVKI 281


>gi|241763692|ref|ZP_04761741.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax
           delafieldii 2AN]
 gi|241367081|gb|EER61455.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax
           delafieldii 2AN]
          Length = 641

 Score = 85.1 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/409 (8%), Positives = 98/409 (23%), Gaps = 102/409 (24%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK-- 58
           M   +       + LL    ++  F +V I     ++  S +   ++G  I+  D     
Sbjct: 1   MFESIRKHSKVVM-LLLFLLIIPSFVLVGID-RSYFSQKSSVVARVDGHDISQTDWDNAH 58

Query: 59  --RIALLKLQKI--------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
                 ++ Q          + +     ++ L+ + + +   +K  +    + +     +
Sbjct: 59  KVETDRIRAQSPTVDAKLLDSPQARYATLERLVRDRVFQAASQKMHLVTSDSRLARSLQE 118

Query: 109 HAR-------NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                     +  L AE + + +  QG+    F+  +        V+             
Sbjct: 119 IPAIAALKRPDGSLDAEAYRALVGAQGMSPEGFEANVRRDISVNQVLGGVMGTAFGTDAQ 178

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVR------------ 176
                                 DF  K    + ++ A  +       +            
Sbjct: 179 VKLALDALYQRREVQVARFNPADFAGKVTPSDADLEAYYKAHTADFQQAEQATVEYVVLD 238

Query: 177 -----------------EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK- 218
                             Y       +  + +  +   +          R +      + 
Sbjct: 239 LDSVRAGITLNEDDLRTYYKENLTRLAGKEERRASHILINASKDAPAADREKAKARATQL 298

Query: 219 --------------LEKFASKI-HDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYV 262
                          +K +       + G   +     +   F++      + + ++   
Sbjct: 299 LEQVRKAPATFAEVAKKSSDDTGSAPAGGDLNFFGRGAMVKPFEDAAFAMKKGDISDVVE 358

Query: 263 TQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           T  G   I + D +           L         ++       ++  +
Sbjct: 359 TDFGYHIIMLTDIK--TPRQPNFEELRPSMEAELKQQQAQRKFAEVAES 405


>gi|163733010|ref|ZP_02140454.1| PPIC-type PPIASE domain protein [Roseobacter litoralis Och 149]
 gi|161393545|gb|EDQ17870.1| PPIC-type PPIASE domain protein [Roseobacter litoralis Och 149]
          Length = 285

 Score = 85.1 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/290 (9%), Positives = 78/290 (26%), Gaps = 51/290 (17%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +   +++L    +        +   +    +  +  ++NGE I  G +    A L  +  
Sbjct: 1   MQKHLRILAFSALTAAIAAPVVAQDEVTYTADTVVASVNGEDIKLGHMIAARATLDERYN 60

Query: 69  N---GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
                +L    +++L+ +T   Q IE           N                      
Sbjct: 61  QIPADQLWNGLLEQLVQQTALAQGIESLSAGEAMALDNQE-------------------- 100

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
                                 ++          +++   + +        E+    +L 
Sbjct: 101 --------------RSLKAAKAIEIALEQAITEEDIQAAYDAEFGNIDPEEEFNASHIL- 145

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ 245
                        ++     +E+            + ++     + G+  +     + P 
Sbjct: 146 ----------LETEEEAIAVKEAIDAGANFAATAREKSTGPSGPNGGELGWFGTGMMVPS 195

Query: 246 FQNLLKK-SQNNTTNPYVTQKGVEYIAICD--KRDLGGEIALKAYLSAQN 292
           F+           ++P  TQ G   I + D  K+++      +  + ++ 
Sbjct: 196 FEAATIALEVGEVSDPVETQFGWHVIVLNDTRKKEIPTLEQAREGIQSRL 245


>gi|228932540|ref|ZP_04095421.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228827230|gb|EEM72983.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 285

 Score = 85.1 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 82/304 (26%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     +  ++      SS    T     IT  D  K+   LK +     L ++ 
Sbjct: 4   KHIFIITALISILTLAACGQKDSSATVATATDSTITKSDFEKQ---LKDRYGKDMLYEMM 60

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
            Q++I +  K  E +       + +      ++        ++                 
Sbjct: 61  AQDVITKKYKVSEDDVEKEVQKAKSQYGDQFKNILKNNGLKDEA---------------- 104

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 105 DFKNQIKFKLAMNEAIKKSVTEKDVKA--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ ++            ++ +  +      G   Y     + P+F+    K + 
Sbjct: 145 SDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYKLNV 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              +NP  +  G   I + DK++L     +K  +       +I       + ++K    A
Sbjct: 205 GQISNPVKSPNGYHIIKLTDKKELQPYDEVKDSIRKNLEEERIANPTFSHKLLQKELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|91205713|ref|YP_538068.1| protein export protein prsA precursor [Rickettsia bellii RML369-C]
 gi|157826827|ref|YP_001495891.1| protein export protein prsA precursor [Rickettsia bellii OSU
           85-389]
 gi|122425481|sp|Q1RI35|PLP_RICBR RecName: Full=Parvulin-like PPIase; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase plp; AltName: Full=Rotamase plp;
           Flags: Precursor
 gi|91069257|gb|ABE04979.1| Protein export protein prsA precursor [Rickettsia bellii RML369-C]
 gi|157802131|gb|ABV78854.1| Protein export protein prsA precursor [Rickettsia bellii OSU
           85-389]
          Length = 284

 Score = 85.1 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/305 (11%), Positives = 77/305 (25%), Gaps = 38/305 (12%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
                +++  +  + S      S R+  T  G  + +  I K             ++   
Sbjct: 1   MKKLSIVLLSVSMLSSIAFADNSDRVVATYTGGEVRESQIMKEFKPQLNLPSGETIKN-- 58

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
                                         ++   N  L  ++                +
Sbjct: 59  ------------------FDDFPPQDQDKLIRIYVNNILLKKEVEKSNITSSKEFQEKLE 100

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q    ++++N       +   +   NK         +  +  +L            
Sbjct: 101 NAKNQLAQKELLENYVKSNLTDKMFDDEYNKYVTSLKGKEQIKVAHIL-----------V 149

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYL---LESDLHPQFQNLLKK 252
             +K   D +    +         + +  K    + G   Y+       L P+F+N    
Sbjct: 150 KSEKEANDLKNKLNKGADFAKLAGESSLDKASATNGGVIGYILLNQPGQLVPEFENKAFA 209

Query: 253 -SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
              N  + P  T  G   I + +K+ +   I  K             +   +Y+  L + 
Sbjct: 210 LKVNEVSTPVKTDYGWHIIKVLEKKPVP--IPTKEEAKMTIDNVLAAEILKKYISDLEAK 267

Query: 312 AIIHY 316
           A +  
Sbjct: 268 ADLKI 272


>gi|30261271|ref|NP_843648.1| peptidylprolyl isomerase [Bacillus anthracis str. Ames]
 gi|47526434|ref|YP_017783.1| peptidylprolyl isomerase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184104|ref|YP_027356.1| peptidylprolyl isomerase [Bacillus anthracis str. Sterne]
 gi|65318541|ref|ZP_00391500.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Bacillus
           anthracis str. A2012]
 gi|165873055|ref|ZP_02217675.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0488]
 gi|167636140|ref|ZP_02394445.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0442]
 gi|167641190|ref|ZP_02399444.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0193]
 gi|170686825|ref|ZP_02878045.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0465]
 gi|170709056|ref|ZP_02899485.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0389]
 gi|177654451|ref|ZP_02936348.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0174]
 gi|190566537|ref|ZP_03019454.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis Tsiankovskii-I]
 gi|227815990|ref|YP_002815999.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. CDC 684]
 gi|229603142|ref|YP_002865693.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0248]
 gi|254682666|ref|ZP_05146527.1| peptidylprolyl isomerase [Bacillus anthracis str. CNEVA-9066]
 gi|254725460|ref|ZP_05187242.1| peptidylprolyl isomerase [Bacillus anthracis str. A1055]
 gi|254734085|ref|ZP_05191798.1| peptidylprolyl isomerase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254740272|ref|ZP_05197964.1| peptidylprolyl isomerase [Bacillus anthracis str. Kruger B]
 gi|254753611|ref|ZP_05205647.1| peptidylprolyl isomerase [Bacillus anthracis str. Vollum]
 gi|254758708|ref|ZP_05210735.1| peptidylprolyl isomerase [Bacillus anthracis str. Australia 94]
 gi|46396833|sp|Q81TU1|PRSA2_BACAN RecName: Full=Foldase protein prsA 2; Flags: Precursor
 gi|30254885|gb|AAP25134.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. Ames]
 gi|47501582|gb|AAT30258.1| peptidylprolyl isomerase PrsA [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178031|gb|AAT53407.1| protein export protein prsA [Bacillus anthracis str. Sterne]
 gi|164711210|gb|EDR16767.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0488]
 gi|167510831|gb|EDR86223.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0193]
 gi|167528494|gb|EDR91259.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0442]
 gi|170126011|gb|EDS94909.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0389]
 gi|170669348|gb|EDT20091.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0465]
 gi|172080735|gb|EDT65817.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0174]
 gi|190562089|gb|EDV16057.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis Tsiankovskii-I]
 gi|227006723|gb|ACP16466.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. CDC 684]
 gi|229267550|gb|ACQ49187.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0248]
          Length = 285

 Score = 85.1 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/304 (9%), Positives = 75/304 (24%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + +++      SS    T     IT  D  K++             K  
Sbjct: 4   KHIFIITALISILMLAACGQKNSSATVATATDSTITKSDFEKQLK--------DRYGKDM 55

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           + E+I + +  ++ + S    D            +   +   +                 
Sbjct: 56  LYEMIAQDVITKKYKVSDDDVDKEVQKAKSQYGDQFKNVLKNNGLKDEADF--------- 106

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 107 --KNQIKFKLSMNKAIKQSVTEKDVKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ ++            ++ +  +      G   Y     + P+F+    K   
Sbjct: 145 SDENEAKEIKKKLDTGASFEELAKQESQDLLSKEKGGDLGYFHSGAMTPEFETAAYKLKI 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              ++P  +  G   I +  K+DL     +K  +       +        + ++     A
Sbjct: 205 GQISDPVQSPNGYHIIKLTGKKDLKPYDEVKNSIRKNLEEERTADPIFGKKLLQSELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|160890578|ref|ZP_02071581.1| hypothetical protein BACUNI_03021 [Bacteroides uniformis ATCC 8492]
 gi|270295715|ref|ZP_06201915.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317479880|ref|ZP_07938997.1| ppic-type ppiase domain-containing protein [Bacteroides sp. 4_1_36]
 gi|156859577|gb|EDO53008.1| hypothetical protein BACUNI_03021 [Bacteroides uniformis ATCC 8492]
 gi|270273119|gb|EFA18981.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|290769660|gb|ADD61440.1| putative protein [uncultured organism]
 gi|316903954|gb|EFV25791.1| ppic-type ppiase domain-containing protein [Bacteroides sp. 4_1_36]
          Length = 455

 Score = 85.1 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/272 (11%), Positives = 89/272 (32%), Gaps = 11/272 (4%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKR--IALLKLQKINGELE 73
                +  +  +V    Y    +   +   +  E I   ++ +    AL + +K + +  
Sbjct: 7   FKFVILFALTLLVGSTVYGQDNVIDEVVWVVGDEAILKSEVEEARMSALYEGRKFDRDPY 66

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNY---FFVQHARNTGLSAEDFSSFLDKQGIG 130
            +  +E+ V+ L   +     I    + V     +          S E    + +K    
Sbjct: 67  CVIPEEIAVQKLYLHQAALDSIEVSESEVIQRVDYMTNMYIANIGSREKMEEYFNKTSSQ 126

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR---TVLFSI 187
                +  A + +    ++   + +      E+    + +   ++     +    ++   
Sbjct: 127 IRETLRENAREGLKVQKMQQKLVGEIKITPAEVRRYFKDLPQDSIPYIPTQVEVQIITQQ 186

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQF 246
           P   L+    V++R+++  +   +          ++      +  G+ ++     L P +
Sbjct: 187 PKVPLEEIEDVKRRLREYTDRVNKGESFSMLARLYSEDRGSAMRGGEIEFSGRGMLDPAY 246

Query: 247 QNLLKKSQN--NTTNPYVTQKGVEYIAICDKR 276
            N+    Q+    +    ++ G   I + +KR
Sbjct: 247 ANVAFNLQDPSKVSKIVESEYGFHIIQLIEKR 278


>gi|256827570|ref|YP_003151529.1| parvulin-like peptidyl-prolyl isomerase [Cryptobacterium curtum DSM
           15641]
 gi|256583713|gb|ACU94847.1| parvulin-like peptidyl-prolyl isomerase [Cryptobacterium curtum DSM
           15641]
          Length = 404

 Score = 84.7 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/327 (8%), Positives = 88/327 (26%), Gaps = 35/327 (10%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA-------------- 61
           +T          +   S  S   SS +  T+NG  I++  ++  +               
Sbjct: 11  VTGALSAACMLGIVACSSSSSTASSGVAATVNGTEISEQTVTDFVQNFRETQGLTDEDTW 70

Query: 62  ---LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
              + K      ++    +   +   L +Q  E++G++     V+              +
Sbjct: 71  GKWMAKSSMTPSQVRDQIIDYFVGIDLTRQAAEENGVSVSDEDVDAQVASMKA-NYSDDD 129

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
            + S L + G  +  ++  +    +   + +            E      +    +    
Sbjct: 130 AWQSALKQAGTTEEGYRDSVHNAMLENALKEKVTAESTAGASDEELLTYAQQYARSFSGA 189

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYL 237
              + +    D+    Q  + +                +  ++++         G   + 
Sbjct: 190 KKSSHILFASDDSDTAQKVLDQINSGQI-------SFEDAAKEYSIDTVSAQDGGNVGWD 242

Query: 238 LESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY--------L 288
           L +     + +      +   +   ++  G+  I   D  +   E+             +
Sbjct: 243 LLNRFVQPYTDALTNLDKGQVSGLVMSDYGIHIIKCTDVYEAPDEVTEIDQVPVELIDYI 302

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                     +   +++   +  A I 
Sbjct: 303 RKMVESNNETQAYKQWMADYKEKATIE 329


>gi|309388299|gb|ADO76179.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halanaerobium
           praevalens DSM 2228]
          Length = 343

 Score = 84.7 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/348 (13%), Positives = 98/348 (28%), Gaps = 53/348 (15%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMS---------SRIRTTINGEVITDGDISK----- 58
            K        II  I+ + +                  I   +N E I+  ++ +     
Sbjct: 3   FKRNILVITGIIMLILAVPAAAQDIQEVNETVTEADQEIAAYVNSEEISMQELEQFAGVR 62

Query: 59  ----------------RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
                            +     Q++  E +K+ +++LI   L  QE +   +      +
Sbjct: 63  NILMQILQTNQEFGSVMLQTEAGQQVVDEFQKLKLEQLITNKLMVQEAKSRKLKVSDEEM 122

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV--------KNDFML 154
           N  F Q  +      +     L+               +  + + +        + + + 
Sbjct: 123 NKIFDQQIQALKQQNQLSEEQLEAAIQKQGFESMKEYKELFFENNMNGFLINKLREEVVN 182

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
           K    E E+    Q  K     E   +       D     +   + +             
Sbjct: 183 KVKVSEEEVKDYYQNNKKQFESEAEKKVSHILFDDQAKAEKVLAEIK---------AGAD 233

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESD---LHPQFQNLLKKSQNNTT-NPYVTQKGVEYI 270
                +K ++       G   Y+  ++           +K      T  P  TQ G   I
Sbjct: 234 FAEMAKKHSTGPTADKGGNLGYVSANERGLDQTFRDAAMKLEVGEITNEPVKTQFGFHLI 293

Query: 271 AICDKRDLGG--EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R+ G      +KA + +     K  +   ++V+ LR  A I  
Sbjct: 294 KVTDYREAGVRDFEEVKAQIESNLKNKKKSQAFQDFVENLREKAEIDI 341


>gi|156741601|ref|YP_001431730.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseiflexus
           castenholzii DSM 13941]
 gi|156232929|gb|ABU57712.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseiflexus
           castenholzii DSM 13941]
          Length = 337

 Score = 84.7 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/310 (10%), Positives = 92/310 (29%), Gaps = 28/310 (9%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-----------E 71
            I  ++ ++S  +    S+    ++   +T  ++ +RI  ++                 +
Sbjct: 6   AIAAVLVVLSLAACGAGSQTVARVDNVTLTRQELDQRIDRIEKGLQQQAGTGFPLPSRLD 65

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           +E+  V + I + L      + GIT     VN    +  +     +        ++ +G 
Sbjct: 66  IEQELVSQFIDQQLTLGLARQRGITVSDADVNEQIERFRQQIQTGSGISLEQAIQEQLGL 125

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                      +   + +        +          ++   T R   + TV   +   +
Sbjct: 126 PGESSPEFRLFVTYFLARQKLGETLVSEVDIRQRISDEVMADTQRMVDVATVAHILVATE 185

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLL 250
            + +  +++          +     +  ++ +       + G  + +      P+F   +
Sbjct: 186 DEAKQVIER--------LDKGEDFADLAKELSQDPGSAENGGVYENIQRGQFVPEFDKAM 237

Query: 251 KK--SQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALK--AYLSAQNTPTK---IEKHEA 302
            +      TT  P  TQ G   I +  + +          A +  +         +    
Sbjct: 238 FEDLQPGETTKTPVQTQFGWHVIRLVSRGEAPALDPANAPAVIEQRVAQELPFEQQSALE 297

Query: 303 EYVKKLRSNA 312
             ++  +  A
Sbjct: 298 RLLQSEKQKA 307


>gi|118474611|ref|YP_891704.1| foldase protein PrsA [Campylobacter fetus subsp. fetus 82-40]
 gi|118413837|gb|ABK82257.1| foldase protein PrsA [Campylobacter fetus subsp. fetus 82-40]
          Length = 269

 Score = 84.7 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/297 (13%), Positives = 89/297 (29%), Gaps = 39/297 (13%)

Query: 26  CIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL--KLQKINGELEKIAVQELIVE 83
            I+ +    + ++++ +  T+NG+ ITD D++  +     +   +  +++K  +  +I  
Sbjct: 5   VILALSLAAAVSLNAAVLATVNGQNITDEDLAPVLGPHGSETSNVPADMKKNLLDRVIER 64

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            L   + +K GI  D                                           ++
Sbjct: 65  KLMLDQAKKDGIEKDDEFKK-------------------------------VVKELEDNV 93

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
             ++            E +     ++ K+  V     +     +   K            
Sbjct: 94  AINIWMKKQFDAIKVDEKKAKDFYEQNKDKFVVPAQAKAKHILVETEKEAADIIKSLNGL 153

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTT-NPY 261
                  +  +   +  K   K   V+ G+  +  ES +   F +      +   T  P 
Sbjct: 154 KGAALDKKFSEIAKE--KSIDKSSAVNGGELGWFGESQMVASFSKAAFGLKKGEITNKPV 211

Query: 262 VTQKGVEYIAICDKRDLGG--EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            ++ G   I   D +D         KA +  Q    +      + V  L+ +A I Y
Sbjct: 212 KSEFGYHVILKEDMKDKSAVGFDKAKANIENQMKSEEFRTVMQKKVSDLKKDAKIEY 268


>gi|239814796|ref|YP_002943706.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus
           S110]
 gi|239801373|gb|ACS18440.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus
           S110]
          Length = 636

 Score = 84.7 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/395 (9%), Positives = 100/395 (25%), Gaps = 98/395 (24%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK--RIALL 63
           F   +  + +     ++  F +  +  Y+      +    ++G+ IT  +     R+   
Sbjct: 5   FRKYNKIVMIFLFLLIIPSFVLFGVERYQGSGGEVK-VARVDGQNITRPEWDAQHRLETD 63

Query: 64  KLQKINGE----------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH---- 109
           ++++ +            +    ++ ++ + +      KS +T     ++  F Q     
Sbjct: 64  RIRQQSPNVDPTLLESDVMRYATLERMVRDRVLAAAAAKSNVTISEERLSRIFAQDTGLA 123

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK-------------------- 149
           A  T     D  SF    G     ++  +  +     ++                     
Sbjct: 124 AFRTPDGKFDRESFQRVTGRTPEQYEASMRAELATQQMLLGVTGTAFTPPALAAATINAF 183

Query: 150 -------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
                          F  K    + ++ A  +                  +     +   
Sbjct: 184 YDRREIQVARFSPESFASKVTVSDADVEAYYKAHTAQFQAPEQASIEYLVLDLEAAKKNI 243

Query: 197 FVQKRIKD----------------------------------------AEESRLRLPKDC 216
            V +                                            AE+    + K  
Sbjct: 244 SVNEADLKTYYEQNTARFGTKEERRASHILITAPASAPAADRAKAKAKAEQLLAEVKKAP 303

Query: 217 NKLEKFASKI-----HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                 A K           G   ++    +   F++ L    + + ++   T+ G   I
Sbjct: 304 ATFADVARKNSQDPGSAEKGGDLDFVTRGAMVKPFEDALFALKKGDISDVVETEFGYHII 363

Query: 271 AICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAE 303
            + D +   +     ++A +  +    +  +  A+
Sbjct: 364 RLADIKPAVVPPFEQVRATIENEVRSQQATQEFAK 398


>gi|224532128|ref|ZP_03672760.1| basic membrane protein [Borrelia valaisiana VS116]
 gi|224511593|gb|EEF81999.1| basic membrane protein [Borrelia valaisiana VS116]
          Length = 336

 Score = 84.7 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/334 (15%), Positives = 104/334 (31%), Gaps = 37/334 (11%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTIN---GEVITDGDISKRIALLKLQKING-- 70
           + ++  LII   V I S+      +     IN    E+IT      ++ + K  +     
Sbjct: 1   MKSFLFLIILGTVGINSFAQ----NTPVAIINLYKNEIITKTGFDSKVDIFKKTQGRDLT 56

Query: 71  -ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
              +K  +Q LI + L  QE  K GI    + V            L+ E     ++KQG 
Sbjct: 57  VAEKKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRTQFGLVNLTDEQIKQMIEKQGT 116

Query: 130 GDNHFKQYLAIQSIWPDVV----KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
                   +        +V    +  F       E EI    +  K   V   + R    
Sbjct: 117 NWGELLSSMKRSLSSQKLVLKQAQPKFSEVKTPSEKEIIEYYEANKTKFVNPDIARVSHV 176

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLH- 243
                  +    + +      + R +       + K+++        G   +L   D + 
Sbjct: 177 FFSTKDKKRSDVLDQAKNILSQIRSKKITFEEAVRKYSNDESSKAKNGDLGFLSRGDQNA 236

Query: 244 ------PQFQNLLKKSQNNTTNPYVTQKGVEYIAI-----------CDKRDLGGEIALKA 286
                    + +   ++ + ++P  +++G   I +            DK     ++ +K 
Sbjct: 237 QNLLGADFMKEVFNFNKGDISSPIASKEGFHIIKVTEKYAQRFLGLNDKVSPTTDLIVKD 296

Query: 287 YLSAQNTP----TKIEKHEAEYVKKLRSNAIIHY 316
            +            + + + +   KL  +A I  
Sbjct: 297 AIRNNMINVQQQQIVVQVQQDVYGKLNKSANIQI 330


>gi|213022578|ref|ZP_03337025.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 335

 Score = 84.7 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 89/287 (31%), Gaps = 21/287 (7%)

Query: 47  NGEV---ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           N EV   IT   + + +  L  Q          +  L    +   E   S    D+    
Sbjct: 50  NNEVRRRITV--LPQEVDALAKQIGTQNDASTELN-LSHILIALPENPTSEQVNDAQRQA 106

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-----------F 152
              V+ ARN     +   ++   Q         +  IQ +     +              
Sbjct: 107 ESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPI 166

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               G   +++   + + ++I+V E   R +L         +Q    K  + A + +   
Sbjct: 167 RSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMN-DQQARLKLEEIAADIKSGK 225

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYI 270
                  ++++         G   +       P F++ L K      + P  +  G   I
Sbjct: 226 TTFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKLHKGQISAPVHSSFGWHLI 285

Query: 271 AICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D R +   + A K          K  +  A ++++ R++A +  
Sbjct: 286 ELLDTRKVDKTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKI 332


>gi|317154730|ref|YP_004122778.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944981|gb|ADU64032.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 632

 Score = 84.7 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 65/231 (28%), Gaps = 6/231 (2%)

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
           +Q  +      +   V+Y     A        D     +      + F     ++  +  
Sbjct: 175 EQARQIFDWVGEEVRVDYILSSPAAFAPQVRVDAKEVDEFYASNQDKFMVPEQVRIRYLA 234

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL---FSIPDNKLQNQGFVQKRIK 203
               D   +    + EI A          +E  ++       +   +  + Q   +K+I 
Sbjct: 235 FTPKDLAARQEVSDPEIDAYFAANSASMKQEEQVKASHLLIMTSDSDSDEEQAEARKKID 294

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYV 262
            A               + +        G   +    D+ P+F+       +   + P  
Sbjct: 295 AAYAKAKAGGDFATLARQNSEGPSAAGGGDLGWFGRGDMVPEFEQAAFSTPKGQVSEPVR 354

Query: 263 TQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           TQ G   I + D+++          +         E+  AE V  L   A+
Sbjct: 355 TQFGWHIIYVEDRKEAR--ELALDEVRKDIAIAIAEEKAAERVTDLLDQAM 403



 Score = 72.4 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 65/224 (29%), Gaps = 14/224 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + S +I  +    ++++F     +S         I  T+N ++IT  +     
Sbjct: 1   MLEIMRENASGWIVKILFGIIIVVFVFAFGMSGLETGQ-DPILATVNDQIITRAEFEDAF 59

Query: 61  AL------------LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
                            Q  + + +++ + ELI   L   E  + GI+     V     +
Sbjct: 60  QRAAEGVRTANPDVTPAQLQDPQFKQMVLGELINSRLLLHEAARLGISASDEEVFAAITR 119

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
            +     +                             +++            +  P   +
Sbjct: 120 QSYFWNQAGAFDRDIYMAALRSIRMTPALFEANFK-NEMIAGKVQDMVRKTGVATPEQAR 178

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
           ++ +    E  +  +L S      Q +   ++  +    ++ + 
Sbjct: 179 QIFDWVGEEVRVDYILSSPAAFAPQVRVDAKEVDEFYASNQDKF 222


>gi|251778113|ref|ZP_04821033.1| foldase protein PrsA [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082428|gb|EES48318.1| foldase protein PrsA [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 247

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/281 (9%), Positives = 74/281 (26%), Gaps = 39/281 (13%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
           M +++   + G  I D D+   +     ++      +   + L+ + +  + +   G   
Sbjct: 1   MENKVLAIVAGNEIKDKDLDAVLNRYPQERRAMFQGEQGREALLEQVVAFELMRNFGKEL 60

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
             +    +          +                              +  N  +    
Sbjct: 61  KIDETEEYKNLVEGLAKEAL---------------------------TQLAINKVLADVT 93

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             + ++        ++ V    +      +   +               E          
Sbjct: 94  VTDEDVKKYYDDNASMFVNPPTVSAKHILVKTEEEATSIK---------EEIENGLAFEE 144

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR 276
             +K+++       G      +  + P+F+ +  +      + P  TQ G   I + DK 
Sbjct: 145 AAKKYSTCPSKEQGGSLGNFGKGAMVPEFEKVAFESEVGIVSEPVKTQFGYHLILVEDKA 204

Query: 277 DLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +        +K  +  Q    + +    E +K+L     + 
Sbjct: 205 ESTTVPFEQVKDAVLRQLINERQQNKYLEMIKQLSDKYGVE 245


>gi|238754239|ref|ZP_04615596.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia ruckeri ATCC 29473]
 gi|238707486|gb|EEP99846.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia ruckeri ATCC 29473]
          Length = 627

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/399 (8%), Positives = 105/399 (26%), Gaps = 87/399 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + ++ +  +    +++ F +  +  Y     +      +NG+ I+   + + +
Sbjct: 1   MMDNLRAAANNVVLKIILALIMLSFILTGVGGYLIGGSNDY-AAKVNGQEISRAQLEQSM 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                    +L +  + +LI   L  Q  ++ G++     V  
Sbjct: 60  QSERSRLQQQLGEQFSVLAGNEGYMQQLRQQILGQLINNMLLDQYAKQLGLSASDEQVKD 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY--------------------------L 138
              Q       +  D + +L+          Q+                           
Sbjct: 120 SIRQLPYFQTDNKFDNNKYLELVNRMGYTPDQFAQIQRQQLINQQLLQAFSETGFALPAE 179

Query: 139 AIQSIWPDVVKNDF----------MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
           A       + + +             K    + E+ A  ++ +N  +    ++     + 
Sbjct: 180 AQAMSELILQQREVRLATLDLKALQAKQTVTDEELKAYYEQNRNSFIAPEEMKISFIEMD 239

Query: 189 DNKLQNQGFVQKRIKDAEESRLR-------------------------------LPKDCN 217
              +Q +  V +        + R                                     
Sbjct: 240 AAAMQEKITVTEEDIATYYEQHRSSFTQPERRNYSVIQFKNEADAKTALAELKNGADFTT 299

Query: 218 KLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
             ++ ++  I   + G+  +L       + +      +   ++   +  G   + + D +
Sbjct: 300 LAKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNDIK 359

Query: 277 DLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
               +    +   L+ +    K         +K+   A 
Sbjct: 360 PEQVKPLSEVHDALATKVKQEKAVDAYYALQQKVSEAAT 398


>gi|196230323|ref|ZP_03129186.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chthoniobacter
           flavus Ellin428]
 gi|196225920|gb|EDY20427.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chthoniobacter
           flavus Ellin428]
          Length = 318

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/316 (11%), Positives = 89/316 (28%), Gaps = 18/316 (5%)

Query: 18  TYFVLIIFCIVPIVSY-KSWAMSSRIRTTINGEVITDGDIS-----------KRIALLKL 65
               L  F +    +      +   +   +N ++IT   +              +    L
Sbjct: 5   LLLSLTCFSLCFAPALLAKEEVLDGLAAVVNSDIITYKQVRDLTAAKEQQAHDTLQDQAL 64

Query: 66  QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ-HARNTGLSAEDFSSFL 124
            K   E+   AV ELI   L  Q+ +  G +   + ++             +   F   L
Sbjct: 65  TKRIKEVRTAAVNELIDRQLILQDFKSKGYSIPEHFIDDEIEALIKSRFHGNRPAFLRAL 124

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
             QG+    F +      I  ++ K           +E      +           +  L
Sbjct: 125 QAQGLSLQRFSEIQRDNIIVQEMRKQAAKGATEQPTVEKVNAAYRPSAALASSQPEQMRL 184

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             I  +        +K +++  +      +  +    ++      + G+  ++    ++ 
Sbjct: 185 RVIMVHGNDEGQ--RKFMENIRQKLTEGAEFGDLARMYSEDSSQETYGEWGWIDRRTINE 242

Query: 245 QF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK--AYLSAQNTPTKIEKHE 301
              +         T+           +    K+        +            + ++  
Sbjct: 243 TLTKAAFALKVGETSPIIEQGGNFYLLNCAAKKGAVTRTVNELGGNTPTTLVKGERQQMV 302

Query: 302 AEYVKKLRSNAIIHYY 317
           +++++KLR  A I  +
Sbjct: 303 SDWLQKLRRKAYIKVF 318


>gi|229823923|ref|ZP_04449992.1| hypothetical protein GCWU000282_01227 [Catonella morbi ATCC 51271]
 gi|229786656|gb|EEP22770.1| hypothetical protein GCWU000282_01227 [Catonella morbi ATCC 51271]
          Length = 325

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/320 (7%), Positives = 77/320 (24%), Gaps = 40/320 (12%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M       +          F  ++     + +  + A +     T+  + IT  D+  ++
Sbjct: 1   MKKTTLNRM--------MAFASVLVLSGAVANTATVAYAQDNIATVGDQTITKEDLYNQM 52

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
                           ++ +I++ + +     +                           
Sbjct: 53  KKDAGLVT--------LRSMILQKVLEMNASNAADLKKQAEDEVA------KQIDKVGGE 98

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
             F +          +    Q    ++       +    +  I                 
Sbjct: 99  EKFQELLTYQKLGSVEDFKNQIYIRNLFNEVVSKQIDQSDATIEDYYNNT---------- 148

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
               +             ++  KD               + ++        G        
Sbjct: 149 ----YQPKMEAQHILVDTEEEAKDIISKLDAGENFDELAKTYSKDGSAQQGGLLSPFTSG 204

Query: 241 DLHPQFQN-LLKKSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI- 297
            +  +F++ +  ++    T  P  ++ G   I   +  +      +K  +  +   +K+ 
Sbjct: 205 QMVKEFEDGVKGQANGEYTKTPVKSKFGYHIIKTINNGEKKPFADIKDDVKKEYLDSKLK 264

Query: 298 -EKHEAEYVKKLRSNAIIHY 316
            +K   + + KL   A +  
Sbjct: 265 DQKFSYKIIGKLIEAAKVQI 284


>gi|218888106|ref|YP_002437427.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218759060|gb|ACL09959.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 630

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 16/194 (8%), Positives = 46/194 (23%), Gaps = 8/194 (4%)

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT---VRE 177
               ++     + ++    I      +            E  + A               
Sbjct: 208 EQIAERYNENMDAWRNPQRISLDAVTLTPASLATSVEIPESAVAAFYADNAETYFVVPER 267

Query: 178 YLIRTVLFSIPDN-KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQ 235
              R +LF   +          + + +D      +     +   K +         G   
Sbjct: 268 VHARHILFMAQEGASKDEDAAARAKAEDVIAQLKKGKDFASLAAKLSDDKGSGAQGGDLG 327

Query: 236 YLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAIC--DKRDLGGEIALKAYLSAQN 292
           +  +  + P F+           + P  +  G   I +   + +       ++  +  + 
Sbjct: 328 WFTKGQMVPPFEEAAFALKPGEISAPVRSAFGWHVIKMEAHETQRTRALDEVRGEIRQRL 387

Query: 293 TPTKIEKHEAEYVK 306
              K  +   E + 
Sbjct: 388 GEEKASERMHEALD 401



 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/324 (11%), Positives = 85/324 (26%), Gaps = 27/324 (8%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI---- 56
           M   +      +   +    ++++F    + S  +   SS    T+N + I   +     
Sbjct: 1   MLELIRAHAQSWGVKIAFGIIILVFVFWGVGSMHN--SSSGALATVNKKPILIQEFGREY 58

Query: 57  SKRIALLKLQ--------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
            +++  L+ +             L++  +Q +I E L   E  + G++     +      
Sbjct: 59  ERQVETLRSRYPGITAEDMKQMGLKRQVLQAMITERLLADEAARIGLSVSPVELRRSIES 118

Query: 109 HARNTG----LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
                       AE + S L  Q      F+  +    +   +            E    
Sbjct: 119 ITAFRNGDGRFDAEVYRSVLKGQQTSPGRFEDGIRRDMLLQKLRDRVAAPASVTDEEARA 178

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
                 +  T+   L    L             + +R  +  ++     +          
Sbjct: 179 LFDYGRERRTIEYVLF--PLEDYVLKVTPTDEQIAERYNENMDAWRNPQRISLDAVTLTP 236

Query: 225 KIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL 284
                S+     + ES +   + +  +        P             +      + A 
Sbjct: 237 ASLATSV----EIPESAVAAFYADNAETY---FVVPERVHARHILFMAQEGASKDEDAAA 289

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKL 308
           +A         K  K  A    KL
Sbjct: 290 RAKAEDVIAQLKKGKDFASLAAKL 313


>gi|329962620|ref|ZP_08300568.1| PPIC-type PPIASE domain protein [Bacteroides fluxus YIT 12057]
 gi|328529651|gb|EGF56549.1| PPIC-type PPIASE domain protein [Bacteroides fluxus YIT 12057]
          Length = 455

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/272 (11%), Positives = 85/272 (31%), Gaps = 11/272 (4%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKR--IALLKLQKINGELE 73
                +  +  +     Y    +   +   +  E I   ++ +    AL   +K + +  
Sbjct: 7   FKFVVLFALTLLAGSTVYGQDNVIDEVVWVVGDEAILKSEVEEARMSALFDGRKFDRDPY 66

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNY---FFVQHARNTGLSAEDFSSFLDKQGIG 130
            +  +E+ V+ L   +     I    N V     +          S E    + +K    
Sbjct: 67  CVIPEEIAVQKLFLHQAALDSIEVSENEVIQRVDYMTNMYIANIGSREKMEEYFNKTSSQ 126

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR---TVLFSI 187
                +  A + +    ++   + +      E+    +     ++     +    ++   
Sbjct: 127 IRETLRENAREGLKVQKMQQKLVGEIKVTPAEVRRYFKNRPQDSIPYIPTQVEVQIITLQ 186

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQF 246
           P   L+    V+KR+++  +   +          ++      +  G+ ++     L P +
Sbjct: 187 PKIPLEEIEDVKKRLREYTDRINKGESFSMLARMYSEDRGSAMRGGEIEFSGRGMLDPAY 246

Query: 247 QN--LLKKSQNNTTNPYVTQKGVEYIAICDKR 276
            N     +  N  +    ++ G   I + +KR
Sbjct: 247 ANVAFNLQDPNKVSKIVESEYGFHIIQLIEKR 278


>gi|228913840|ref|ZP_04077465.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228845779|gb|EEM90805.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 285

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/304 (9%), Positives = 75/304 (24%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + +++      SS    T     IT  D  K++             K  
Sbjct: 4   KHIFIITALISILMLAACGQKNSSATVATATDSTITKSDFEKQLK--------DRYGKDM 55

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           + E+I + +  ++ + S    D            +   +   +                 
Sbjct: 56  LYEMIAQDVITKKYKVSDDDVDKEVQKAKSQYGDQFKNVLKNNGLKDEADF--------- 106

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 107 --KNQIKFKLSMNKAIKQSVTEKDVKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ ++            ++ +  +      G   Y     + P+F+    K   
Sbjct: 145 SDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFHSGAMTPEFETAAYKLKI 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              ++P  +  G   I +  K+DL     +K  +       +        + ++     A
Sbjct: 205 GQISDPVQSPNGYHIIKLTGKKDLKPYDEVKNSIRKNLEEERTADPIFGKKLLQSELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|207724194|ref|YP_002254592.1| peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum MolK2]
 gi|206589405|emb|CAQ36367.1| peptidyl-prolyl cis-trans isomerase protein [Ralstonia solanacearum
           MolK2]
          Length = 648

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/419 (10%), Positives = 99/419 (23%), Gaps = 107/419 (25%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   V T     + L+    V   F    +  Y  +   S     +   VIT  ++  R+
Sbjct: 1   MLDFVRTH-RRLMFLVLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDTVITTSELDARV 59

Query: 61  -------------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
                             Q    ++ +  +  +I + +   E  ++ ++     V     
Sbjct: 60  REQTERLRQMLGGQYDPRQFEGPQMRRDVLDGIIQQRMMVNEASRTNLSVADTKVRETIE 119

Query: 108 Q-------HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK----------- 149
           Q          +     + +   L  QG+    F   L  + +   + +           
Sbjct: 120 QIPAVAQLRKPDGKFDTDAYIKLLAAQGMTPEQFDARLRSELVLQQIPQSIVSSAFVPKS 179

Query: 150 ----------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
                                  D+  K    +  I A     +        ++      
Sbjct: 180 LVDRLIEARDQQREVQALLLKPADYASKVAVDDKAIQAYYDAHQQEFAVPEQVKAEYVVF 239

Query: 188 PDNKLQNQG----FVQKRIKDAEESRLRLPKDCNKL------------------------ 219
               +  Q        K   D   +R +  +                             
Sbjct: 240 SGEDMMKQIPVTPEQLKEYYDQNAARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEE 299

Query: 220 ------------EKFASKIHDV-----SIGKAQYLLESDLHPQFQNLLK--KSQNNTTNP 260
                        + A K           G+  +L +    PQF + L   K   + ++ 
Sbjct: 300 VLAEVRKTPGNFAELAKKYSGDPGSAAQGGELGFLAKGATVPQFDSALFALKQPGDISDV 359

Query: 261 YVTQKGVEYIAICDKRD------LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             +  G   I + + +          +  L+  +  Q    K  +    +   +   + 
Sbjct: 360 VQSDFGFHIIKLEEVKGGGVQSLEAVKPELEREVRTQLANKKYTELADAFSNGVEDQSD 418


>gi|188589997|ref|YP_001922502.1| foldase protein PrsA [Clostridium botulinum E3 str. Alaska E43]
 gi|188500278|gb|ACD53414.1| foldase protein PrsA [Clostridium botulinum E3 str. Alaska E43]
          Length = 247

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/281 (8%), Positives = 74/281 (26%), Gaps = 39/281 (13%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
           M +++   + G  I D D+   +     ++      +   + L+ + +  + +   G   
Sbjct: 1   MENKVLAIVAGNEIKDKDLDAVLNRYPQERRAMFQGEQGREALLEQVVAFELMRNFGKEL 60

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
             +    +          +                              +  N  +    
Sbjct: 61  KIDETEEYKNLVEGLAKEAL---------------------------TQLAINKVLADVT 93

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             + ++        N+ +    +      +   +       +                  
Sbjct: 94  VTDEDVKKYYDDNANMFINPPTVSAKHILVKTEEEATSIKEEIA---------NGLAFEE 144

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR 276
             +K+++       G      +  + P+F+ +  +      + P  TQ G   I + DK 
Sbjct: 145 AAKKYSTCPSKEQGGSLGNFGKGAMVPEFEKVAFESEVGIVSEPVKTQFGYHLILVEDKA 204

Query: 277 DLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +        +K  +  Q    + +    E +K+L     + 
Sbjct: 205 ESTTVPFEQVKDAVLRQLINERQQNKYLEMIKQLSDKYGVE 245


>gi|187776514|ref|ZP_02992987.1| hypothetical protein CLOSPO_00005 [Clostridium sporogenes ATCC
           15579]
 gi|187775173|gb|EDU38975.1| hypothetical protein CLOSPO_00005 [Clostridium sporogenes ATCC
           15579]
          Length = 247

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/282 (10%), Positives = 78/282 (27%), Gaps = 39/282 (13%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
           M + I   +NG+ ITD D+   I     ++      +   ++LI + +            
Sbjct: 1   MENNIVAIVNGQEITDKDVDNTILSFPKERQTYLNTEKGREDLIKQMI------------ 48

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                               E   ++     + +    +     +    +++        
Sbjct: 49  ------------------DFELSYNYAKDMKVDETEDFKKQLEATKKQLLIQVAVSNVLA 90

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
              +     K+  +           +         +++                      
Sbjct: 91  RATVAEEEAKKYYEENKEEFRTQELITARHILVDSEDEANS------IYGKIKNGLDFSE 144

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKR 276
             EK++        G      +  + P+F+  + +   +  T    TQ G   I + + R
Sbjct: 145 AAEKYSKCPSKAQGGSLGTFTKGQMVPEFEKAVFEAEVDKVTEAVKTQFGYHLIIVDNIR 204

Query: 277 D--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +  +     +KA ++ +    K  +   E+ + LR    +  
Sbjct: 205 ESMIKPFDEVKAMINNKLLQEKQNQQYNEFTQNLRDKYTVEI 246


>gi|15594454|ref|NP_212242.1| basic membrane protein [Borrelia burgdorferi B31]
 gi|195941846|ref|ZP_03087228.1| basic membrane protein [Borrelia burgdorferi 80a]
 gi|216264206|ref|ZP_03436198.1| basic membrane protein [Borrelia burgdorferi 156a]
 gi|218249766|ref|YP_002374636.1| basic membrane protein [Borrelia burgdorferi ZS7]
 gi|221217448|ref|ZP_03588919.1| basic membrane protein [Borrelia burgdorferi 72a]
 gi|223889066|ref|ZP_03623655.1| basic membrane protein [Borrelia burgdorferi 64b]
 gi|224532923|ref|ZP_03673533.1| basic membrane protein [Borrelia burgdorferi WI91-23]
 gi|224533973|ref|ZP_03674557.1| basic membrane protein [Borrelia burgdorferi CA-11.2a]
 gi|225549343|ref|ZP_03770316.1| basic membrane protein [Borrelia burgdorferi 94a]
 gi|225549885|ref|ZP_03770847.1| basic membrane protein [Borrelia burgdorferi 118a]
 gi|226320700|ref|ZP_03796258.1| basic membrane protein [Borrelia burgdorferi 29805]
 gi|226321981|ref|ZP_03797506.1| basic membrane protein [Borrelia burgdorferi Bol26]
 gi|2687994|gb|AAC66497.1| basic membrane protein [Borrelia burgdorferi B31]
 gi|215980679|gb|EEC21486.1| basic membrane protein [Borrelia burgdorferi 156a]
 gi|218164954|gb|ACK75015.1| basic membrane protein [Borrelia burgdorferi ZS7]
 gi|221192726|gb|EEE18942.1| basic membrane protein [Borrelia burgdorferi 72a]
 gi|223885315|gb|EEF56416.1| basic membrane protein [Borrelia burgdorferi 64b]
 gi|224512122|gb|EEF82513.1| basic membrane protein [Borrelia burgdorferi WI91-23]
 gi|224512809|gb|EEF83176.1| basic membrane protein [Borrelia burgdorferi CA-11.2a]
 gi|225369576|gb|EEG99027.1| basic membrane protein [Borrelia burgdorferi 118a]
 gi|225370201|gb|EEG99641.1| basic membrane protein [Borrelia burgdorferi 94a]
 gi|226232571|gb|EEH31325.1| basic membrane protein [Borrelia burgdorferi Bol26]
 gi|226233916|gb|EEH32639.1| basic membrane protein [Borrelia burgdorferi 29805]
 gi|312148208|gb|ADQ30867.1| basic membrane protein [Borrelia burgdorferi JD1]
 gi|312149453|gb|ADQ29524.1| basic membrane protein [Borrelia burgdorferi N40]
          Length = 336

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/334 (14%), Positives = 102/334 (30%), Gaps = 37/334 (11%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTIN---GEVITDGDISKRIALLKLQKI---N 69
           + ++   +I   V I S+      +     IN    E+IT      ++ + K  +     
Sbjct: 1   MKSFLFWVILGTVGISSFAQ----NTPVAIINLYKNEIITKTGFDSKVDIFKKTQGRDLT 56

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
              +K  +Q LI + L  QE  K GI    + V             + E     ++KQG 
Sbjct: 57  DAEKKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRTQFGLVNFTDEQIKQMIEKQGT 116

Query: 130 GDNHFKQYLAIQSIWPDVV----KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
                   +        +V    +  F       E EI    +  K   V   + R    
Sbjct: 117 NWGELLSSMKRSLSSQKLVLKQAQPKFSEIKTPSEKEIVEYYEANKTKFVNPDISRVSHI 176

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLH- 243
                  +    + +      + R +       + K+++        G   +L   D + 
Sbjct: 177 FFSTKDKKRSDVLDQAKNILSQIRSKKITFEEAVRKYSNDESSKAKNGDLGFLSRGDQNA 236

Query: 244 ------PQFQNLLKKSQNNTTNPYVTQKGVEYIAI-----------CDKRDLGGEIALKA 286
                    + +   ++ + ++P  +++G   + +            DK     ++ +K 
Sbjct: 237 QNLLGADFVKEVFNFNKGDISSPIASKEGFHIVKVTEKYAQRFLGLNDKVSPTADLIVKD 296

Query: 287 YLSAQNTP----TKIEKHEAEYVKKLRSNAIIHY 316
            +            + + + +   KL  +A I  
Sbjct: 297 AIRNNMINVQQQQIVVQVQQDMYGKLNKSANIQI 330


>gi|78356452|ref|YP_387901.1| peptidyl-prolyl cis-trans isomerse domain-containing protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78218857|gb|ABB38206.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 629

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 43/153 (28%), Gaps = 4/153 (2%)

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ-GFVQKRIKDAEESRLRLP 213
              +  +       K           R +L        + +    +K+I +  E   +  
Sbjct: 244 SVSDDRIAAYYEDNKESFRQEERVHARHILVLADAGASEEKVAAAEKKINELYERIRKGA 303

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAI 272
                 ++ +        G   +     + P+F+     +     T P  TQ G   I +
Sbjct: 304 DFAKVAKEASEGPSAPLGGDLGWFGRGQMVPEFEQAAFAAAAGQVTAPVRTQFGFHIIKV 363

Query: 273 CDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYV 305
            +K +          +  + +    E+   E V
Sbjct: 364 EEKENARIRT--LDEVHDEISHRLAEEAALEKV 394



 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 60/214 (28%), Gaps = 18/214 (8%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVIT----DGDI 56
           M   +  +   +   +    ++I+F    + S       S +   +    IT      + 
Sbjct: 1   MLDSIRQNAQSWGVKIAFGLIIIVFVFWGVGSM--DNQPSNVVAKVGKTSITVNAFAREY 58

Query: 57  SKRIALLKLQ--------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
            +++ L++ Q             L+   + ++I E L  Q+ EK G+      +     +
Sbjct: 59  EQQVELVRAQFPDVTSEDLKQAGLKMRVLNQMISEVLLVQQAEKQGLEVSPAELKLRIAE 118

Query: 109 HARNT----GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
                        E +   L  QG     ++  +    +   +     M      E    
Sbjct: 119 IPVFNDADGNFDGERYKQVLAAQGTTPGAYEDKIRRSMLAQKMRDFITMPAAVTAEEAKA 178

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
                 +  ++   L     +       + Q   
Sbjct: 179 MFLYSAERRSMDYVLFAAENYLDQVKPGEEQISA 212


>gi|301052807|ref|YP_003791018.1| peptidylprolyl isomerase [Bacillus anthracis CI]
 gi|300374976|gb|ADK03880.1| peptidylprolyl isomerase [Bacillus cereus biovar anthracis str. CI]
          Length = 285

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/304 (9%), Positives = 74/304 (24%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + +++      SS    T     IT  D  K++             K  
Sbjct: 4   KHIFIITALISILMLAACGQKNSSATVATATDSTITKSDFEKQLK--------DRYGKDM 55

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           + E+I + +  ++ + S    D            +   +   +                 
Sbjct: 56  LYEMIAQDVITKKYKVSDDDVDKEVQKAKSQYGDQFKNVLKNNGLKDEADF--------- 106

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 107 --KNQIKFKLSMNKAIKQSVTEKDVKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ ++            ++ +  +      G   Y     + P+F+    K   
Sbjct: 145 SDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFHSGAMTPEFETAAYKLKI 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              ++P  +  G   I +  K+DL     +K  +       +          ++     A
Sbjct: 205 GQISDPVQSPNGYHIIKLTGKKDLKPYDEVKNSIRKNLEEERTADPIFGKNLLQSELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|170736766|ref|YP_001778026.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia MC0-3]
 gi|254249421|ref|ZP_04942741.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia
           PC184]
 gi|124875922|gb|EAY65912.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia
           PC184]
 gi|169818954|gb|ACA93536.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia MC0-3]
          Length = 276

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 89/307 (28%), Gaps = 55/307 (17%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           +L I  +   +S    A ++    T+NG  IT  D+   +     Q  + ++ +    +L
Sbjct: 10  LLTIVALAGALSGPVHAQTAETVATVNGTPITQADVDTLLR-ASGQPDSPQIRQAIKNQL 68

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I   L +Q  EK+                                          Q   +
Sbjct: 69  ITRVLVQQAAEKANYADKPEVKAA------------------------------MQQAKV 98

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
            +     +++    +    E       + +  +   EY  R ++   P         ++ 
Sbjct: 99  TAEVQLYLRDHVKPEPVTDEQVKARYDELVAALGKNEYKPRVIVVKDPVAAATVLSELKA 158

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL---------LESDLH-PQFQNLL 250
                               +++      + G+  ++           + L  P  Q L 
Sbjct: 159 -----------GKSFDGLARQYSLAPSRDTGGELPWVSFNTPAAEGKTARLPLPVAQALE 207

Query: 251 KKSQNNTTNPYVTQKGV-EYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
           K +   TT   +   GV   + +  KR   + G    K  L  Q      EK  A+ +  
Sbjct: 208 KLTVGATTKDSIPVDGVRAIVKLDAKRPTQVPGFETAKPTLQQQLQAIAAEKASAQMIGN 267

Query: 308 LRSNAII 314
           L  +A I
Sbjct: 268 LLKDAKI 274


>gi|126698956|ref|YP_001087853.1| putative peptidyl-prolyl isomerase [Clostridium difficile 630]
 gi|254974902|ref|ZP_05271374.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-66c26]
 gi|255092291|ref|ZP_05321769.1| putative peptidyl-prolyl isomerase [Clostridium difficile CIP
           107932]
 gi|255100375|ref|ZP_05329352.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-63q42]
 gi|255306317|ref|ZP_05350488.1| putative peptidyl-prolyl isomerase [Clostridium difficile ATCC
           43255]
 gi|255314029|ref|ZP_05355612.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-76w55]
 gi|255516709|ref|ZP_05384385.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-97b34]
 gi|255649808|ref|ZP_05396710.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-37x79]
 gi|255655366|ref|ZP_05400775.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-23m63]
 gi|306519909|ref|ZP_07406256.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-32g58]
 gi|115250393|emb|CAJ68215.1| putative peptidyl-prolyl isomerase [Clostridium difficile]
          Length = 251

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/281 (11%), Positives = 77/281 (27%), Gaps = 46/281 (16%)

Query: 38  MSSRIRTTINGEVITDGDISKRIA----LLKLQKINGELEKIAVQELIVETLKKQEIEKS 93
           M  ++  T+  + IT+ DI   +        +Q    E +K  + +L+ + L   + ++ 
Sbjct: 1   MEKKVLATVGEKEITNIDIENALKSLDPYQAMQFKTEEGKKHLLNDLVNQELFFLDAKE- 59

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
                                                    +     +++      N  +
Sbjct: 60  ------------------------------EKLDEEEIFKLEMKKIEENVLKQFAINKVL 89

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                 E E     +  K+   +          +  ++   +   Q + ++         
Sbjct: 90  SSVNVTEDEKVKFFEANKSSFSKPESATAKHILVDSDEKAKEILAQIKSEEI-------- 141

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAI 272
              +   K +S       G         + P+F+      ++   + P  TQ G   I +
Sbjct: 142 SFEDAALKHSSCPSKDMGGDLGTFGRGQMVPEFEEAVFSMAKGEVSEPVKTQFGYHIIKL 201

Query: 273 CDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            D ++        +KA +       K  +     +  L + 
Sbjct: 202 EDLQESTESTFDEVKAEVEKSLLYQKQNEVYGNKINALNAK 242


>gi|313885841|ref|ZP_07819584.1| PPIC-type PPIASE domain protein [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924745|gb|EFR35511.1| PPIC-type PPIASE domain protein [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 472

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/284 (10%), Positives = 90/284 (31%), Gaps = 17/284 (5%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--GELEKIAVQELIVETLKKQEIE 91
            + ++   +  T+  E I   +I  +   ++ Q +   G  +    ++L V+ L   + +
Sbjct: 38  SAGSVVDEVIWTVGDEPILKSEIENQKLYMRSQGMPLEGNPDCYLTEQLAVQMLFLNQAK 97

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV---V 148
              I+ D+  V+ F      +            +      +  ++   I ++  ++   +
Sbjct: 98  IDSISVDNTKVDRFVDNFMESLVQQIGSRERLEEYFNRPYSSIREQQRIMAVNNEIVRQM 157

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
           +   +        EI +   ++   ++        +  +          + +  +     
Sbjct: 158 QQKIIQGVAVTPTEIRSYYAQIPQDSLPYIPDVVEVQVLRITPDIELAAIDQIKEQLRSY 217

Query: 209 RLRLPKDCNKLEKFASKIHDVS-----IGKAQYLLESDLHPQFQNLLKKSQN--NTTNPY 261
              +          A      S      G+  ++  S L P+F  ++    +    +   
Sbjct: 218 SDDIVAGRRDFSTIARLYSQDSRTSLRGGEYGFVARSSLEPEFAQVVFALSDTKQVSPII 277

Query: 262 VTQKGVEYIAICDKRDLGGEIALKAYLSAQ--NTPTKIEKHEAE 303
            T  G   + + +KRD         ++  +    P K+++   +
Sbjct: 278 RTATGYHIVQLIEKRD---NTINFRHILLKPSVAPDKLQQAVNK 318


>gi|145298875|ref|YP_001141716.1| peptidyl-prolyl cis-trans isomerase D [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851647|gb|ABO89968.1| peptidyl-prolyl cis-trans isomerase D [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 637

 Score = 84.7 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/406 (7%), Positives = 99/406 (24%), Gaps = 95/406 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+       +  +    +++ F +  + SY +   +     T+NG  I+   +    
Sbjct: 2   MLDKLREGAQGKVAKVILGLIILSFALAGVGSYLN-GPARTAPATVNGNDISSAALENAY 60

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +  +                 +  +  +  LI + L   +  + G+      +  
Sbjct: 61  RNERARMESQMGESFSQLAANPDYMKQFRRGVLDRLIDQALFDSKARELGLRVSDEQIKQ 120

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
                 + A +   + + +   + + G+    F+  L    +   ++             
Sbjct: 121 AIIAMPEFAEDGKFNNDRYLQLIRRAGMTPEMFRDSLRQDMVRQQLMGALLGTEFALKGE 180

Query: 152 -----------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRT------ 182
                                  ++      + E+    +      + +  ++       
Sbjct: 181 AEQLDKLYNQTRDLRLVRLAAAAYLGDVQVSDQEVEQYYKTNSARFMNDEKVKVDYLLLD 240

Query: 183 -------------------------------VLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                                             +             +++     ++ +
Sbjct: 241 AANLGKDIKVTEQDAKDYYDQHQDLFQRAERRHVAHILIPFGKDEKAAEKLAGELLTKAK 300

Query: 212 LPKDCNKLEK--FASKIHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGV 267
              D   L K   +        G+  +  +  + P F+          + +N   +  G 
Sbjct: 301 GGDDFAALAKANSSDTFSAKKGGELDWFEKGVMDPAFEQAAFALNKAGDLSNLVKSPFGF 360

Query: 268 EYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             I +    +          +       + +K +  +  + +  A 
Sbjct: 361 HVIKLLGV-EAAQTKPFVDVMGETIRRLQADKAKELFFAEQQKMAD 405



 Score = 35.8 bits (80), Expect = 9.2,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 12/30 (40%)

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           L  Q    K +      + +LR  A I Y+
Sbjct: 600 LQGQLGQGKAQVSYKSLIDELRKAAKIEYF 629


>gi|320107420|ref|YP_004183010.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Terriglobus
           saanensis SP1PR4]
 gi|319925941|gb|ADV83016.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Terriglobus
           saanensis SP1PR4]
          Length = 661

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/269 (10%), Positives = 72/269 (26%), Gaps = 10/269 (3%)

Query: 52  TDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
           T  D  K I     ++   +     V   + +   +     SG     +          +
Sbjct: 159 TTADFEKEIKEDMERRRLRQFVTAGVN--VNDNAVRSAYLLSGTKVKFDYAMISPEDVKK 216

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
           N   +  +   + +                +       +    K    + E+ +   +  
Sbjct: 217 NVTSTDSELQKYFNDNKARYAKAVAEARKVTYVAVAADSLPGGKPQVSDAEVQSYYSQHA 276

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKI-H 227
           +    E  +R     I      +          A++   +        +  +  +     
Sbjct: 277 DQYKVEEQVRVRHILISVPPGADAKVDAAAKTKAQDLLTKIRAGGNFADLAKANSDDPGS 336

Query: 228 DVSIGKAQYLLE-SDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGE--IA 283
             + G+  ++     + P FQ          T++   TQ G   I   +++D   +    
Sbjct: 337 KGTGGELGWVKSNGQMVPAFQTAAMALKAGQTSDLVKTQFGYHIIQATERQDAHVKPLTE 396

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
           + + +       K    E  +V  L + A
Sbjct: 397 VASQIRPMLEQQKAAAAEQSFVTALSNEA 425



 Score = 43.9 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 60/240 (25%), Gaps = 11/240 (4%)

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
             +  +E+        +        A   GL     +  L  Q          +   +  
Sbjct: 400 QIRPMLEQQKAAAAEQSFVTALSNEAAKQGLDKAAAAHHLTAQTTDYIAQDGVVNGVADS 459

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
             +++  F  K G+    +   +       V         F +  + + +    ++    
Sbjct: 460 SQLLQAAFAAKKGDAPKAVATGEGMAIFQVVDIQPAHAPTFDLWKSHVADDYAAEQVPTM 519

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVS---------IGKAQYLLESDLHPQFQNLLKKSQN 255
            +    +L +   +L        +++                    +          ++ 
Sbjct: 520 MQAKLTKLSERAKQLNDLKKAAVEMNIPVKTSDLVGRDGNVPELGAMSGGASVAFTLAKG 579

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALK--AYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             + P    +    + + DK++   E   K           +K  +  A Y+  L     
Sbjct: 580 AVSAPIDASRSGAVLQVVDKQEPTTEDIAKNFDKTKNDLLESKRNEVFALYMGTLMDQYK 639


>gi|219685287|ref|ZP_03540106.1| basic membrane protein [Borrelia garinii Far04]
 gi|219673060|gb|EED30080.1| basic membrane protein [Borrelia garinii Far04]
          Length = 336

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 106/334 (31%), Gaps = 37/334 (11%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTIN---GEVITDGDISKRIALLKLQKING-- 70
           + ++  L+I  I+ I S+      +     IN    E+IT      ++ + K  +     
Sbjct: 1   MKSFLFLVILGIMGINSFAQ----NTPVAIINLYKNEIITKTGFDSKVDIFKKTQGRDLT 56

Query: 71  -ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
              +K  +Q LI + L  QE  K GI    + V            L+ E     ++KQG 
Sbjct: 57  AAEKKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRTQFGLVNLTDEQIKQMIEKQGT 116

Query: 130 GDNHFKQYLAIQSIWPDVV----KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
             +     +        +V    +  F       E EI    +  K   V   + R    
Sbjct: 117 NWSELLASMKRSLSSQKLVLKQAQPRFSEVKTPSEKEIVEYYEANKTKFVNPDISRVSHI 176

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLH- 243
                  +    + +      + R +       + K+++        G   +L   D + 
Sbjct: 177 FFSTKDKKRSDVLDQAKNILSQIRSKKITFEEAVRKYSNDESSKAKNGDLGFLSRGDQNA 236

Query: 244 ------PQFQNLLKKSQNNTTNPYVTQKGVEYIAI-----------CDKRDLGGEIALKA 286
                    + +   ++ + ++P  +++G   I +            DK     ++ +K 
Sbjct: 237 QNLLGADFIKEVFNFNKGDISSPIASKEGFHIIKVTEKYAQRFLGLNDKVSPTTDLIVKD 296

Query: 287 YLSAQNTPT----KIEKHEAEYVKKLRSNAIIHY 316
            +            + + + +   KL  +A I  
Sbjct: 297 AIRNNMVNIQQQQIVVEVQQDVYSKLNKSANIQI 330


>gi|89901031|ref|YP_523502.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax
           ferrireducens T118]
 gi|89345768|gb|ABD69971.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax
           ferrireducens T118]
          Length = 640

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/403 (9%), Positives = 98/403 (24%), Gaps = 101/403 (25%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK-- 58
           M   V       + ++    ++  F +  I  Y     +  +   +    IT G+     
Sbjct: 1   MFDFVRKHTKIMMAVMFL-LIIPSFVLFGIDGYNRSRDAGSVVARVGSHDITQGEWDAVH 59

Query: 59  --RIALLKLQKIN--------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
                 L+    N         +     ++ L+ + +  Q  +K  +T     +     +
Sbjct: 60  KSEADRLRASMPNLDAKLLDSPQARYATLERLVRDRVLAQAADKFKLTTSDARLARNLHE 119

Query: 109 HAR-------NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV-------------- 147
           +         +  L  + +   +  QG+    F+  +        V              
Sbjct: 120 NPSIAALRQPDGKLDMDRYRQLVGSQGLTPEGFEARVRQDLSVRQVEAGVGETGFAAASV 179

Query: 148 -------------------VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                 DF  K    + E+ A  +  + +             + 
Sbjct: 180 ADVALNAFFEKREVQIASFTAADFASKVSPTDAELNAFYKANQALFQSPEHASIEYVVLD 239

Query: 189 DNKLQNQGFVQKRIKDA----------------------------------------EES 208
            + ++    + +    +                                        +E 
Sbjct: 240 MDSVKKSIVISEADMKSYYEQNAERLSGKEERRASHILITAAKDAPAADRQKAKARADEL 299

Query: 209 RLRLPKDCNKLEKFASKI-----HDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYV 262
              + +  +     A K         + G   +     +   F++ +    + + +    
Sbjct: 300 LKTVRQSPDSFADVAKKNSQDTGSAANGGDLDFFTRGAMVKPFEDAVFAMKKGDISEVVE 359

Query: 263 TQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAE 303
           +  G   I + D +         L+A + A     + +   AE
Sbjct: 360 SDFGYHIIKLTDIKKPVQRSFEELRAGIEADLKTQQAQARFAE 402


>gi|237807859|ref|YP_002892299.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Tolumonas auensis
           DSM 9187]
 gi|237500120|gb|ACQ92713.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Tolumonas auensis
           DSM 9187]
          Length = 638

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/402 (9%), Positives = 108/402 (26%), Gaps = 95/402 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           +  K+       +  +  + +++ F +  + SY +   S+     ++ EVI+   + +  
Sbjct: 2   LMDKLRDGAQGRVAKIIFWLIILSFALAGVGSYINSPASNDP-AVVDDEVISAQTLEQSY 60

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                    +L+K  ++ L+ ++L   +   +G+      V  
Sbjct: 61  QNERARMQAQYGEAAAQLLDNPQYLAQLKKSVLERLVNQSLLNNKALNAGVRLSDEQVKD 120

Query: 105 FFVQH---ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
              Q      +     + F++ L + G     F   +    I    +             
Sbjct: 121 VIRQMPEFQTDNKFDNQKFTTALSRVGYTPESFANSMRQDLIRQYWLDGILTTEFALPAE 180

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                  F  +    + ++ A  +   N  ++   ++     + 
Sbjct: 181 VSRLDALYQQKRDVKMITIPVETFSKQITVTDQDVDAFYKAHSNEFMQSEQVKLNYIVLN 240

Query: 189 DNKLQNQGF-------------------------------------VQKRIKDAEESRLR 211
              L                                           QK+  +       
Sbjct: 241 SADLAKTIQPADSELKAYYQQHAELFTEPARRKVSHILITDKDDNAAQKKADELLAKLKS 300

Query: 212 LPKDCNKLE-KFASKIHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVE 268
                   + + A  +     G+  +  +  + P F+        +N  +    +  G  
Sbjct: 301 GTDFTQLAKTESADTLSARQGGELDWFEKGVMDPAFETAAFALNQKNELSAVVKSAFGYH 360

Query: 269 YIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
            I + DK+D        +   +  +    K ++  A+  +KL
Sbjct: 361 IIKLLDKQDAIETPYDKVVTIVRQKFVDEKAKELFADQQQKL 402



 Score = 40.0 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 27/264 (10%), Positives = 67/264 (25%), Gaps = 9/264 (3%)

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
               ++    ++  I  Q+ + E  K+   ++     D    N   +             
Sbjct: 367 KQDAIETPYDKVVTIVRQKFVDEKAKELFADQQQKLSDIGFENPDSLDAVAEGLKLPLQK 426

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
           + F+  Q +        +  Q+    +   +   +  ++   +      +         +
Sbjct: 427 TDFIAAQQLPAEINVPAVKEQAFAEKLRDENTNSEVISVSDTVAVMLHVIDYKPSSAKPL 486

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN--------KLEKFASKIHDVSIG 232
             V   +           +K   +A     ++    +          +    K       
Sbjct: 487 SEVKDLVVAKLRAT-KAAEKAHTEAMALLEKVKAGQSIDEQLTKLNAKVEEKKGLARFGT 545

Query: 233 KAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN 292
                L   +    +   K             + V  +          +  L+  LS Q 
Sbjct: 546 DIPAPLAQAVFKLAKPADKVVSAGLYADEEGNQSVLVLEKVISAPETADAPLQQGLSEQL 605

Query: 293 TPTKIEKHEAEYVKKLRSNAIIHY 316
              K E+     +++LR  A I Y
Sbjct: 606 VKLKQEETYGALIEELRQKAKIKY 629


>gi|281423984|ref|ZP_06254897.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Prevotella oris
           F0302]
 gi|281401909|gb|EFB32740.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Prevotella oris
           F0302]
          Length = 480

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/289 (10%), Positives = 81/289 (28%), Gaps = 17/289 (5%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--GELEKIAVQELIVETLKKQE 89
           S    ++   +   +  E I   D+ +     +++ +   G  +    +++ V+ L   +
Sbjct: 46  SVPEHSVIDEVVWVVGDEPIMKSDVEQMRLQGEMEGMKWGGNPDCRIPEQIAVQKLFLHQ 105

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
                I    + +     Q       S        + QG   +  +  L        +++
Sbjct: 106 AALDSIEVTESDIAQTVEQQINYWINSVGSREKLEEYQGKSLSQIRSDLHDDVKNSKMIQ 165

Query: 150 N---DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
                 M        ++    + +   ++        +  +       Q  + +      
Sbjct: 166 QMKRKIMSDVTVTPADVRRYFKNLPEDSIPFVPTEVEVEILVKKPRIPQSEINRVKDQLR 225

Query: 207 ESRLRLPKDCNKLEKFASKIH-----DVSIGKAQYLLESDLHPQFQNLLKKSQN--NTTN 259
               R+ K        A             G+  Y     L P F ++     +    + 
Sbjct: 226 SFTDRVTKGETSFSTLARLYSEDPGSARQGGEMDYAGRGTLDPAFASVAFNLTDPKKISK 285

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
              ++ G   I + DKR   G+     ++     P    +   + + +L
Sbjct: 286 IVESEFGYHIIQLVDKR---GDKVKVRHIL--LKPKVSAEDLNKALGRL 329


>gi|253990887|ref|YP_003042243.1| peptidyl-prolyl cis-trans isomerase [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253782337|emb|CAQ85501.1| Peptidyl-prolyl isomerase [Photorhabdus asymbiotica]
          Length = 623

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/399 (8%), Positives = 95/399 (23%), Gaps = 87/399 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y +          +NG+ I+   + +  
Sbjct: 1   MMDNLRTAANSPVLKIVLALIILSFVLTGVGGYLTSGT-DSYAAEVNGQTISRAQLEQAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLK------------------ 86
              +                      ++    ++ LI   L                   
Sbjct: 60  QQERNMLQEQLGDKFSVLASNEQSMKQIRSQVLERLINNALIDQYSQELGLSASDEQVKD 119

Query: 87  ------------KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
                       K +  K     + + ++   +       L  +          I     
Sbjct: 120 AIRNISYFQINGKFDNNKYLDFLNRSNLSPDILAEQTRQNLINQQLIMAFSGSEIVLPSE 179

Query: 135 KQYLAIQSIWPDVVK------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
            +  A   +    V+          ++    + ++       KN  +    ++     + 
Sbjct: 180 VKLNAELFLQQRAVRLATLELKKVHVRQEVTDKDLQDYYNVNKNSFIAPEEVKISYIRMD 239

Query: 189 ------------DNKLQNQGFVQKRIKDAEESRLRLPKDCN------------------- 217
                        +         KR    E+ +  L +                      
Sbjct: 240 AADEMDKVSVTSVDVDSYYEHNLKRYTQPEQKKYSLVQLATEVEAKIVLDELNKGADFGK 299

Query: 218 -KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
              EK   K    + G+  ++ E  L  + +    K +   ++      G     + D +
Sbjct: 300 LAAEKSTDKFSAKNKGEIGWMEEDSLPEEMKKANLKEKGQISSVIKVPNGFAIFHLDDVK 359

Query: 277 D--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                    +++ +       K         +K+   A 
Sbjct: 360 PQITKPLSEVRSEIEKTIKQEKAVDAFYALQQKVSDAAT 398


>gi|149194292|ref|ZP_01871389.1| CELL BINDING FACTOR 2 PRECURSOR MAJOR ANTIGEN PEB4A [Caminibacter
           mediatlanticus TB-2]
 gi|149135467|gb|EDM23946.1| CELL BINDING FACTOR 2 PRECURSOR MAJOR ANTIGEN PEB4A [Caminibacter
           mediatlanticus TB-2]
          Length = 292

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 84/283 (29%), Gaps = 44/283 (15%)

Query: 40  SRIRTTINGEVITDGDISKRIALLK--LQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
           + +   +NG+ IT  +I+  +  +    +    +L    V++L+ +              
Sbjct: 43  NTVVAEVNGKKITVAEINAYLQGITGDKRIKLQDLPAQHVKKLVKD-------------- 88

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                              A+  + +  K    +N  +   A   +  D+          
Sbjct: 89  ------------------YADTLTVYEKKAKSIENTPQFKAAKMKLAVDMWLKKEFDNIK 130

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             + E  A  +K K++  +      +       K +             + +    K   
Sbjct: 131 ISDKEAKAFYEKNKDVFFKSTP--QIKARHILVKDEKLAKKLINELKGLKGKALEEKFAE 188

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTT-NPYVTQKGVEYIAICDK 275
             +K++     V  G+  +     + P+F +          T  P  T+ G   I +  K
Sbjct: 189 LAKKYSIGPSKVQGGELGWFSPKQMVPEFAKAAESLKPGEITLKPVKTRFGYHIILVEGK 248

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +         +K  +       K++K     ++ L+    I +
Sbjct: 249 KSNTYIPYEKVKDQIIGYLKNQKLKKE----LETLKKQEKIKF 287


>gi|16078059|ref|NP_388876.1| molecular chaperone lipoprotein [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221308834|ref|ZP_03590681.1| molecular chaperone [Bacillus subtilis subsp. subtilis str. 168]
 gi|221313157|ref|ZP_03594962.1| molecular chaperone [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221318081|ref|ZP_03599375.1| molecular chaperone [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221322356|ref|ZP_03603650.1| molecular chaperone [Bacillus subtilis subsp. subtilis str. SMY]
 gi|131027|sp|P24327|PRSA_BACSU RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|39782|emb|CAA40543.1| 33kDa lipoprotein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2226124|emb|CAA74418.1| 33kDa lipoprotein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633331|emb|CAB12835.1| molecular chaperone lipoprotein [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 292

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/304 (11%), Positives = 89/304 (29%), Gaps = 44/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSR-IRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
                +       I++  + +   + +    +   +T G++   +               
Sbjct: 1   MKKIAIAAITATSILALSACSSGDKEVIAKTDAGDVTKGELYTNMK--------KTAGAS 52

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            + +L+ E +                 +       +       D  + L+KQ   D    
Sbjct: 53  VLTQLVQEKVL---------DKKYKVSDKEIDNKLKEYKTQLGDQYTALEKQYGKDY--- 100

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             L  Q  +  + +          + +I    + +K      ++                
Sbjct: 101 --LKEQVKYELLTQKAAKDNIKVTDADIKEYWEGLKGKIRASHI---------------L 143

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL-LESDLHPQF-QNLLKKS 253
              +K  ++ E+   +  K  +  +++++       G   +   E  +   F +   K  
Sbjct: 144 VADKKTAEEVEKKLKKGEKFEDLAKEYSTDSSASKGGDLGWFAKEGQMDETFSKAAFKLK 203

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSN 311
               ++P  TQ G   I   ++R  G    +K  L ++    K+       E V+K+   
Sbjct: 204 TGEVSDPVKTQYGYHIIKKTEER--GKYDDMKKELKSEVLEQKLNDNAAVQEAVQKVMKK 261

Query: 312 AIIH 315
           A I 
Sbjct: 262 ADIE 265


>gi|170759119|ref|YP_001785376.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A3
           str. Loch Maree]
 gi|169406108|gb|ACA54519.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A3
           str. Loch Maree]
          Length = 247

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/282 (11%), Positives = 76/282 (26%), Gaps = 39/282 (13%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
           M + I   +NG+ ITD D+   I     ++      +   +ELI + +            
Sbjct: 1   MENNIVAIVNGQEITDRDVDNTILSFPKERQTYLNTEKGREELIKQMI------------ 48

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                               E    +       +    +     +    +++        
Sbjct: 49  ------------------DFELSYDYAKDMKFDETEDFKKQLEATKKQLLIQIAVSNVLA 90

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
              +    +K+  +           +               +K   +  E          
Sbjct: 91  RATVSEEESKKYYEENKEEFRTQELITARHI------LVDSEKEANNIYEEIKDGLDFSE 144

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKR 276
             EK++        G         + P+F+  + +   +  T    TQ G   I + + +
Sbjct: 145 AAEKYSKCPSKAQGGSLGTFTRGQMVPEFEKAVLEAEVDKVTEAIKTQFGYHLIIVDNIK 204

Query: 277 D--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +  +     +KA +  +    K  +   E+ + LR    +  
Sbjct: 205 ESMIKPFDEVKAMIDNKLLQEKQNEQYNEFTQNLRDKYTVEI 246


>gi|228470588|ref|ZP_04055445.1| peptidyl-prolyl cis-trans isomerase family protein [Porphyromonas
           uenonis 60-3]
 gi|228307715|gb|EEK16691.1| peptidyl-prolyl cis-trans isomerase family protein [Porphyromonas
           uenonis 60-3]
          Length = 472

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/284 (10%), Positives = 89/284 (31%), Gaps = 17/284 (5%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI--NGELEKIAVQELIVETLKKQEIE 91
              ++   +  T+  E I   +I  +   ++ Q +   G  +    ++L V+ L   + +
Sbjct: 38  SRGSIVDEVIWTVGDEPILKSEIENQKLYMRSQGMHLEGNPDCYLTEQLAVQMLFLNQAK 97

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV---V 148
              I+ D+  V+ F      +            +      +  ++     ++  ++   +
Sbjct: 98  IDSISVDNTKVDRFVDNFMESLVQQVGSRERLEEYFNRPYSSIREQQRTMAVNNEIVRQM 157

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
           +   +        EI +   ++   ++        +  +          + K  +     
Sbjct: 158 QQKIIQGVTVTPSEIRSYYAQIPQDSLPYIPDAVEVQVLRITPEIELAAIDKIKEQLRGY 217

Query: 209 RLRLPKDCNKLEKFASKIHDVS-----IGKAQYLLESDLHPQFQNLLKKSQN--NTTNPY 261
              +          A      S      G+  ++  S L P+F  ++    +    +   
Sbjct: 218 SEDIRAGQRDFSTIARLYSQDSRTSVRGGEYGFVARSSLEPEFAQVVFALSDTKQVSPII 277

Query: 262 VTQKGVEYIAICDKRDLGGEIALKAYLSAQ--NTPTKIEKHEAE 303
            T  G   + + +KRD         ++  +    P K+++  ++
Sbjct: 278 RTATGYHIVQLIEKRD---NTINFRHILLKPSIAPDKLQQAVSK 318


>gi|304440474|ref|ZP_07400362.1| peptidyl-prolyl cis-trans isomerase [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371040|gb|EFM24658.1| peptidyl-prolyl cis-trans isomerase [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 370

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 82/290 (28%), Gaps = 12/290 (4%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSG 94
           +      +  T+NG  I     ++  A  +   +    E    ++L  E +   +  +  
Sbjct: 22  ACGNKPGVAATVNGVDIPVETFNEEYAAQRNSIVLTSGEDYLKEKLGKEDMTIDQGIREF 81

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
           +  +   +        +      E          I  +  K+    Q     + +  F  
Sbjct: 82  VLNNLVQMELVRQDAEKKDIKVDEKKVDEQINAIIEQSGSKEKFEEQLKEQGITEKFFRD 141

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG-----FVQKRIKDAEESR 209
                E+         + + + E   + +     D              +   K  ++  
Sbjct: 142 YLAKQELVKEYQDHLKEELKISEEDAKAIYEKDKDKYFVADADHILVETEDEAKSIKKEI 201

Query: 210 LRLPKDCNKLEKFASKIHD-VSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGV 267
                     ++ +       + GK        +  +F++ + K  +   ++P  TQ G 
Sbjct: 202 EEGKDFNELAKEKSKDPTAKDNGGKLGEFSTGQMVKEFEDAVVKMKEGEISDPVKTQFGY 261

Query: 268 EYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
             I +   R           +  Q   T   +   EY+ KL  +A +  Y
Sbjct: 262 HLIKLNSLRHKE-----FDEVKDQIIETGTSEKLTEYLNKLEKDAKVKKY 306


>gi|207723563|ref|YP_002253962.1| isomerase rotamase protein [Ralstonia solanacearum MolK2]
 gi|207743079|ref|YP_002259471.1| isomerase rotamase protein [Ralstonia solanacearum IPO1609]
 gi|206588764|emb|CAQ35727.1| isomerase rotamase protein [Ralstonia solanacearum MolK2]
 gi|206594476|emb|CAQ61403.1| isomerase rotamase protein [Ralstonia solanacearum IPO1609]
          Length = 243

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 65/280 (23%), Gaps = 48/280 (17%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              +NG  I    +   I     Q  + EL   A   L+   L +Q+  K G        
Sbjct: 5   AAVVNGHAIPSAKVDALIKK-SGQPDSPELRNRARDMLVDRELIEQDAAKRG-------- 55

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                     +      Q    Q+    +V  +F     N    
Sbjct: 56  --------------------------LLGRDDVQEQLAQARLNVLVAAEFEDYVKNSPTT 89

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                ++ + I  +    +           +                          +  
Sbjct: 90  EDELHKQYEKIKAQFGNGKEYHAHHILVDKEADAKA------IIAKLKAGGNFEEIAKAQ 143

Query: 223 ASK-IHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTT-NPYVTQKGVEYIAICDKRDL- 278
           +       + G   +       P+F   L    +   T  P  TQ G   I + D RD  
Sbjct: 144 SKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGEITLTPVKTQFGWHVIRLDDTRDAK 203

Query: 279 -GGEIALKAYLSAQNTPTK--IEKHEAEYVKKLRSNAIIH 315
                 +K  L       +          +K LR  A I 
Sbjct: 204 IPAFEDVKPQLLEMMMGDQNWQRAKFQAMLKDLREKATIK 243


>gi|169343240|ref|ZP_02864251.1| putative foldase protein PrsA [Clostridium perfringens C str.
           JGS1495]
 gi|169298538|gb|EDS80619.1| putative foldase protein PrsA [Clostridium perfringens C str.
           JGS1495]
          Length = 326

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/314 (11%), Positives = 85/314 (27%), Gaps = 20/314 (6%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING------------ 70
                  +V     A+      T+NGE IT G++   +  +  Q  +             
Sbjct: 2   FSAVGCNMVEKTQAAIDKTTVATVNGEKITLGEVDSHLKGVFAQMKSQYGDKYMDDPQVA 61

Query: 71  ----ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
               +  +  VQ L+ + +   E +K GI      +     +   N      D      +
Sbjct: 62  QQILQQRQSVVQGLVTDKVLGIEADKLGIKPSEEEIKKKVDEQFENIKKGMGDNFDKALE 121

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
                    + +    +    V++  +      + +      + K   V +         
Sbjct: 122 AEGYTEDTFKDVIKNQVINQAVQDYIIKDVKVTDEDAQKYYDENKQQFVAKDSGVLTKHL 181

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
           + +N+ + Q    +             K  N   +   K    ++G         +    
Sbjct: 182 LFENEEEAQKAYDEIQSGKTTFNDLFTKYENNKSEN-KKPIAENLGVVPAENSGLVQEFV 240

Query: 247 QNLLKKSQNNTTNPYVTQKGVEYIAI---CDKRDLGGEIALKAYLSAQNTPTKIEKHEAE 303
             L    +   +    TQ G   I      +K        +K+ +       K  +    
Sbjct: 241 DGLKPLKEGEISKLIKTQFGYHIIQAGATYEKGAQLPFDEVKSQIIQILKQQKDSEKFKA 300

Query: 304 YVKKLRSNAIIHYY 317
            + + + +  +  Y
Sbjct: 301 DMDQWKKDLNVKVY 314


>gi|226944452|ref|YP_002799525.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Azotobacter
           vinelandii DJ]
 gi|226719379|gb|ACO78550.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Azotobacter
           vinelandii DJ]
          Length = 624

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/194 (11%), Positives = 66/194 (34%), Gaps = 6/194 (3%)

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                   + +     +   + ++ ++ F  +    + ++ A  Q+       +     +
Sbjct: 211 QAYYEEHASSYMTSEQLVVEYIELKRDAFFDQVEIRDEDLQALYQREIANLAEQRQAAHI 270

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL 242
           L     N   ++   + ++++ +    +        ++F+         G   Y      
Sbjct: 271 LL--EVNDKLSEEQAKAKLEELKARIDKGEDFAALAKEFSQDPGSADKGGDLGYAGPDVY 328

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEK 299
            P F+ +L    +   ++P  ++ G   I + D +  ++     LK  L  +    ++E+
Sbjct: 329 DPAFEKVLYSLKEGEVSSPVRSEFGWHLIKLLDVQAPEIPSFDTLKEKLVHELKAEQVEQ 388

Query: 300 HEAEYVKKLRSNAI 313
              E  + L + A 
Sbjct: 389 AFVEASRDLENAAF 402



 Score = 49.7 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/247 (10%), Positives = 73/247 (29%), Gaps = 26/247 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I  +    ++++  +    +  +   +S+    +NG  I   ++++ +
Sbjct: 1   MLQNIRDNSQGWIAKIIIGVIIVLLALTGFDAILTSTSNSQNAAEVNGAKIGLAELNREV 60

Query: 61  ALLK-------------LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF- 106
              +              Q   G L   A+  LI   L  Q  E +   F  N ++    
Sbjct: 61  ETQRRQLLQQLGKDFDASQLNEGLLRNAALSGLIERKLLLQGAEAADFAFSQNALDQLIL 120

Query: 107 --VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV----------KNDFML 154
              +   +    A  F   + + G     F+Q L  + +   +             +   
Sbjct: 121 QTPEFQVDGRFDANRFDQVIAQMGYSRPQFRQMLEQEMLIGQLRAGLAGSGFATDREIGD 180

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
                          +     +  +   V+ +  +    +    ++ + +  E +     
Sbjct: 181 FVRLERQTRDFYTLTLSADPAQVTVGDEVVQAYYEEHASSYMTSEQLVVEYIELKRDAFF 240

Query: 215 DCNKLEK 221
           D  ++  
Sbjct: 241 DQVEIRD 247


>gi|189461628|ref|ZP_03010413.1| hypothetical protein BACCOP_02287 [Bacteroides coprocola DSM 17136]
 gi|189431658|gb|EDV00643.1| hypothetical protein BACCOP_02287 [Bacteroides coprocola DSM 17136]
          Length = 457

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/312 (10%), Positives = 92/312 (29%), Gaps = 19/312 (6%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           ++ F      ++  ++  +  +  Y    +   +   +  E I   D+       + +  
Sbjct: 1   MNKF--KFIKFYACMLLLLAGVSVYAQNNVIDEVVWVVGDEAILKSDVENERLNAQYENR 58

Query: 69  --NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
             +G+   +  +EL ++ L   + E   +      V     Q                + 
Sbjct: 59  HFDGDPYCVIPEELAIQKLYLHQAEIDSVMVSDQEVIQEVEQRIAWLADQIGSKEKMEEY 118

Query: 127 QGIGDNHFKQYLAIQSIWPDV---VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                   ++ L            ++   +        E+     K+   ++     +  
Sbjct: 119 YNKSYTQIREMLRENVKSQKTVVQMQQKIVGDIKLTPAEVRNYFSKLPQDSIPFIPTQVE 178

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI-----GKAQYLL 238
           +  I      ++  +++      E   R+ K        A    +        G+  +  
Sbjct: 179 VQIITQEPKISEEEIERVKSQLREYADRVNKGETSFSTLARFYSEDPGTARRGGEGGFTG 238

Query: 239 ESDLHPQFQNLLKKSQN--NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK 296
             +L P+F N++    +    +  + T+ G     + +KR   G+     ++     P  
Sbjct: 239 RGELVPEFANVVFNLTDTKKVSKVFETEFGYHIAQLIEKR---GDRVNYRHIL--LRPKV 293

Query: 297 IEKHEAEYVKKL 308
            +K     + +L
Sbjct: 294 DQKDIDAALARL 305


>gi|220916557|ref|YP_002491861.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219954411|gb|ACL64795.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 523

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/385 (10%), Positives = 90/385 (23%), Gaps = 73/385 (18%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKS-----WAMSSRIRTTINGEVITDGD 55
           M   V  +       L    ++++F I       S        +      +NG+ I+  D
Sbjct: 1   MLDIVRANKKGIFSWLIVLGIVVVFAINFGPGSLSKGGAGCGGAPAYAARVNGKSISAAD 60

Query: 56  ISKRIALLKLQKINGE-------------LEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             ++   L                     L + A+  L    L  QE  + G+      V
Sbjct: 61  FERQYENLLRFYQQQAGEGFTRELAAQLGLGRQALGVLEDRELALQEARRRGVVVTDREV 120

Query: 103 NYFFVQH---ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV----------- 148
           +    Q      N     E +   +        +F+  +    ++  ++           
Sbjct: 121 SEAVHQMPAFQENGQFRYETYLEAVRANYGSPGNFEAAVRDDLLYQKILGALVETVKVPA 180

Query: 149 -----------------------------------KNDFMLKYGNLEMEIPANKQKMKNI 173
                                              +           +E    +   +  
Sbjct: 181 TEVRAQWAASADRASLQFVRFPVAAAQAEVKVPDAEAKAFADKEGARVEAFYKENADRYD 240

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQ-KRIKDAEESRLRLPKDCNKLEKFASKIH-DVSI 231
              +  +R VL  +      ++     K+I +A     +           +   +     
Sbjct: 241 QRAKAHVRHVLARVAPGASADEEAAARKKIDEAAARVKKGEDFAKVAAALSDDPNTKDRG 300

Query: 232 GKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDK---RDLGGEIALKAY 287
           G   ++ E      F       +    + P  T  G   I   +    R +  E A    
Sbjct: 301 GDLGFVSEGLADAAFAKAALALKAGEVSEPVRTPAGWHLIRADEVVPARKVTLEAARLDI 360

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNA 312
                   + +    E  +     A
Sbjct: 361 ARELLARDRAQALAREKAQAALDAA 385



 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 3/76 (3%)

Query: 243 HPQFQNLLKKSQNNT-TNPYVTQKG--VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
               Q  L           + T  G  +  + + +  D     A +A + A+    K E+
Sbjct: 432 PELAQAALSAKAGEVLPKVFDTPSGPVIAVVKLRESPDPARFEAERAGIEARLQGMKAEQ 491

Query: 300 HEAEYVKKLRSNAIIH 315
               ++++LR  A I 
Sbjct: 492 VRRAWLEELRGKAKIE 507


>gi|262276274|ref|ZP_06054083.1| peptidyl-prolyl cis-trans isomerase PpiD [Grimontia hollisae CIP
           101886]
 gi|262220082|gb|EEY71398.1| peptidyl-prolyl cis-trans isomerase PpiD [Grimontia hollisae CIP
           101886]
          Length = 630

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/253 (9%), Positives = 61/253 (24%), Gaps = 11/253 (4%)

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTV--NYFFVQHARNTGLSAEDFSSFLD 125
               + +  V  LI      +   ++    +  T       +  A     +         
Sbjct: 158 RQDLVREQLVNALISSEFALKGELEALHKLEGQTRTVRTLTLPLADFAEKADITAEQKTA 217

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
                   F +    +  + ++         G  E E  A  +  K         +    
Sbjct: 218 YYEQNPAEFVRPEQFKIAYVELSGEGIADVAGVTEDEAKAYYEANKASYGTAEQRKVSHI 277

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHP 244
            I  +    +   +  + +               +  +         G+  +  +  + P
Sbjct: 278 MIQGDDNAAKEKAEAVLSELNA----GADFAELAKTRSDDTFSAEQGGQLDWFDKGVMDP 333

Query: 245 QFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKH 300
            F+       ++ + T    +  G   I + D +         ++  + AQ       + 
Sbjct: 334 AFEEAAFALNNKGDITGVVQSDFGFHIIKLDDVKPSDAKPFAQVRDDIMAQLKQQHAVEK 393

Query: 301 EAEYVKKLRSNAI 313
                 +L   A 
Sbjct: 394 FYALSNELAEKAF 406



 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/238 (7%), Positives = 68/238 (28%), Gaps = 18/238 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    ++  F    +  Y +         T+  E I+     +  
Sbjct: 1   MMERLREGVNSIAVKIILGLIIFSFVFAGVGGYLASGSVQP-AATVGNEEISRNQFEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              +                      +     ++ ++ ++L  QE +  G+    + +  
Sbjct: 60  QNERALMQAQAGDFFSQLLSDPNYLAQFRFNVLERMVNQSLLDQEAQNLGLRVSDDQIKQ 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
              +     G +    +         +       A   +  D+V+   +    + E  + 
Sbjct: 120 TIREMPAFRGATGLFDNDLYLASLRRNGLTPDQFA-DYVRQDLVREQLVNALISSEFALK 178

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
              + +  +  +   +RT+   + D   +     +++    E++     +       +
Sbjct: 179 GELEALHKLEGQTRTVRTLTLPLADFAEKADITAEQKTAYYEQNPAEFVRPEQFKIAY 236


>gi|148378054|ref|YP_001252595.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A
           str. ATCC 3502]
 gi|153931321|ref|YP_001382453.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A
           str. ATCC 19397]
 gi|153936847|ref|YP_001386006.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A
           str. Hall]
 gi|153940453|ref|YP_001389411.1| peptidil-prolyl isomerase family protein [Clostridium botulinum F
           str. Langeland]
 gi|168181156|ref|ZP_02615820.1| peptidil-prolyl isomerase family protein [Clostridium botulinum
           NCTC 2916]
 gi|170757604|ref|YP_001779674.1| peptidil-prolyl isomerase family protein [Clostridium botulinum B1
           str. Okra]
 gi|226947272|ref|YP_002802363.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A2
           str. Kyoto]
 gi|148287538|emb|CAL81602.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
           A str. ATCC 3502]
 gi|152927365|gb|ABS32865.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A
           str. ATCC 19397]
 gi|152932761|gb|ABS38260.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A
           str. Hall]
 gi|152936349|gb|ABS41847.1| peptidil-prolyl isomerase family protein [Clostridium botulinum F
           str. Langeland]
 gi|169122816|gb|ACA46652.1| peptidil-prolyl isomerase family protein [Clostridium botulinum B1
           str. Okra]
 gi|182668005|gb|EDT79984.1| peptidil-prolyl isomerase family protein [Clostridium botulinum
           NCTC 2916]
 gi|226843846|gb|ACO86512.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A2
           str. Kyoto]
 gi|295317521|gb|ADF97898.1| peptidil-prolyl isomerase family protein [Clostridium botulinum F
           str. 230613]
          Length = 247

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 75/282 (26%), Gaps = 39/282 (13%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
           M + I   +NG+ ITD D+   I     ++      +   +ELI + +  +         
Sbjct: 1   MENNIVAIVNGQEITDRDVDNTILSFPKERQTYLNTEKGREELIKQMIDFELSYNYAKDM 60

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
             +                                  +       I   V          
Sbjct: 61  KFDETED-------------------------FKKQLEATKKQLLIQVAVSNALARATVS 95

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E +    + K +  T      R +L    +        ++                  
Sbjct: 96  EEESKKYYEENKEEFRTQELITARHILVDSEEEANNIYEEIK-----------NGLDFSE 144

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKR 276
             EK++        G         + P+F+  + +   +  T    TQ G   I + + +
Sbjct: 145 AAEKYSKCPSKAQGGSLGTFTRGQMVPEFEKAVLEAEVDKVTQAIKTQFGYHLIIVDNIK 204

Query: 277 D--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +  +     +KA +  +    K  +   E+ + LR    +  
Sbjct: 205 ESMIKPFDEVKAMIDNKLLQEKQNQQYNEFTQNLRDKYTVEI 246


>gi|197121763|ref|YP_002133714.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           K]
 gi|196171612|gb|ACG72585.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           K]
          Length = 524

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/385 (10%), Positives = 89/385 (23%), Gaps = 73/385 (18%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKS-----WAMSSRIRTTINGEVITDGD 55
           M   V  +       L    ++++F I       S        +      +NG+ I+  D
Sbjct: 1   MLDIVRANKKGIFSWLIVLGIVVVFAINFGPGSLSKGGAGCGGAPAYAARVNGKSISAAD 60

Query: 56  ISKRIALLKLQKINGE-------------LEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             ++   L                     L + A+  L    L  QE  + G+      V
Sbjct: 61  FERQYENLLRFYQQQAGEGFTRELAAQLGLGRQALGVLEDRELALQEARRRGVVVTDREV 120

Query: 103 NYFFVQH---ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV----------- 148
           +    Q      N     E +   +        +F+  +    ++  ++           
Sbjct: 121 SEAVHQMPAFQENGQFRYETYLEAVRANYGSPGNFEAAVRDDLLYQKILGALVETVKVPA 180

Query: 149 -----------------------------------KNDFMLKYGNLEMEIPANKQKMKNI 173
                                                          +E    +   +  
Sbjct: 181 TEVRAQWAASADRASLQFVRFPVAAAQAEVKVPDADAKAFADKEGARVEAFYKENADRYD 240

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQ-KRIKDAEESRLRLPKDCNKLEKFASKIH-DVSI 231
              +  +R VL  +      ++     K+I +A     +           +   +     
Sbjct: 241 PKAKVHVRHVLARLAPGASADEEAAARKKIDEAAARVKKGEDFAKVAAALSDDPNTKDRG 300

Query: 232 GKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDK---RDLGGEIALKAY 287
           G   ++ E      F       +    + P  T  G   I   +    R +  E A    
Sbjct: 301 GDLGFVSEGLADAAFAKAALALKAGEVSEPVRTPAGWHLIRADEVVPARKVTLEAARLDI 360

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNA 312
                   + +    E  +     A
Sbjct: 361 ARELLARDRAQALAREKAQAALDAA 385



 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 3/76 (3%)

Query: 243 HPQFQNLLKKSQNNT-TNPYVTQKG--VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
               Q  L           + T  G  +  + + +  D     A +A + A+    K E+
Sbjct: 433 PELAQAALSAKAGEVLPKVFDTPSGPVIAVVKLRESPDPARFEAERAGIEARLQGMKAEQ 492

Query: 300 HEAEYVKKLRSNAIIH 315
               ++++LR  A I 
Sbjct: 493 VRRAWLEELRGKAKIE 508


>gi|332300230|ref|YP_004442151.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177293|gb|AEE12983.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 472

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/284 (10%), Positives = 91/284 (32%), Gaps = 17/284 (5%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--GELEKIAVQELIVETLKKQEIE 91
            + ++   +  T+  E I   +I  +   ++ Q +   G  +    ++L V+ L   + +
Sbjct: 38  SAGSVVDEVIWTVGDEPILKSEIENQKLYMRSQGMPLEGNPDCYLTEQLAVQMLFLNQAK 97

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV---V 148
              I+ D+  V+ F      +            +      +  ++   I ++  ++   +
Sbjct: 98  IDSISVDNTKVDRFVDNFMESLVQQIGSRERLEEYFNRPYSSIREQQRIMAVNNEIVRQM 157

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
           +   +        EI +   ++   ++        + ++          + +  +     
Sbjct: 158 QQKIIQGVAVTPTEIRSYYAQIPQDSLPYIPDVVEVQALRITPDIELAAIDQIKEQLRSY 217

Query: 209 RLRLPKDCNKLEKFASKIHDVS-----IGKAQYLLESDLHPQFQNLLKKSQN--NTTNPY 261
              +          A      S      G+  ++  S L P+F  ++    +    +   
Sbjct: 218 SDDIVAGRRDFSTIARLYSQDSRTSLRGGEYGFVARSSLEPEFAQVVFALSDTKQVSPII 277

Query: 262 VTQKGVEYIAICDKRDLGGEIALKAYLSAQ--NTPTKIEKHEAE 303
            T  G   + + +KRD         ++  +    P K+++   +
Sbjct: 278 RTATGYHIVQLIEKRD---NTINFRHILLKPSVAPDKLQQAVNK 318


>gi|217958742|ref|YP_002337290.1| peptidylprolyl isomerase [Bacillus cereus AH187]
 gi|229137952|ref|ZP_04266551.1| Foldase protein prsA 2 [Bacillus cereus BDRD-ST26]
 gi|217064761|gb|ACJ79011.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus AH187]
 gi|228645609|gb|EEL01842.1| Foldase protein prsA 2 [Bacillus cereus BDRD-ST26]
          Length = 285

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/304 (9%), Positives = 75/304 (24%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + ++S       S    T     IT  D  K++             K  
Sbjct: 4   KHIFIITALLSILMLSACGQKNDSDTVATATDSTITKSDFEKQLK--------DRYGKDM 55

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           + E++ + +  ++ + S    D            +   +   +                 
Sbjct: 56  LYEMMAQDVITKKYKVSDDDVDKELQKAKNQYGDQFKNVLKNNGLKDEADF--------- 106

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 107 --KNQIKFKLAMNEAIKKSITEKDVKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ ++            ++ +  +      G   Y     + P+F+    K   
Sbjct: 145 SDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYKLKV 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              +NP  +  G   I + DK+ L     +K  +       +I       + ++     A
Sbjct: 205 GQISNPVASPNGYHIIKLTDKKALKPYDEVKDSIRKNLEEERISDPIFGKKLLQNELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|325300050|ref|YP_004259967.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacteroides
           salanitronis DSM 18170]
 gi|324319603|gb|ADY37494.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacteroides
           salanitronis DSM 18170]
          Length = 457

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/322 (10%), Positives = 94/322 (29%), Gaps = 18/322 (5%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +S F   L   +V ++  +  +  +    +   +   +  E I   D+       + +  
Sbjct: 1   MSKF--RLMKCYVCLLLSLAGVSVFAQDNVIDEVVWVVGDEAILKSDVENERLNAQYENR 58

Query: 69  --NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
             +G+   +  +EL V+ L   + E   I      V     Q                + 
Sbjct: 59  HFDGDPYCVIPEELAVQKLFLHQAELDSIIVSDQEVIQQVEQRISWLTEQIGSREKMEEY 118

Query: 127 QGIGDNHFKQYLAIQS---IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                   ++ L       +    ++ + +        E+     K+   ++     +  
Sbjct: 119 YNKTYTQIREMLRENIRDGLTVQQMQQEIVGDIKLTPAEVRNYFNKLPQDSIPFVPTQVE 178

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI-----GKAQYLL 238
           +  I       +  +++      E   R+ K        A    +        G+  +  
Sbjct: 179 VQIITQEPKIPETEIERVKAQLREYADRVNKGETSFSTLARFYSEDPGTARRGGEGGFTG 238

Query: 239 ESDLHPQFQNLLKKSQN--NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNT-PT 295
             +L P+F N++    +    +  + T+ G     + +KR   G+     ++  +     
Sbjct: 239 RGELVPEFANVVFNLTDTKKVSKVFETEFGFHIAQLIEKR---GDRVNYRHILLRPKVDQ 295

Query: 296 KIEKHEAEYVKKLRSNAIIHYY 317
           K        +  +  +     +
Sbjct: 296 KAIDASLARLDSIADDIRKEKF 317


>gi|225552054|ref|ZP_03772994.1| basic membrane protein [Borrelia sp. SV1]
 gi|225371052|gb|EEH00482.1| basic membrane protein [Borrelia sp. SV1]
          Length = 336

 Score = 84.3 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/334 (14%), Positives = 102/334 (30%), Gaps = 37/334 (11%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTIN---GEVITDGDISKRIALLKLQKI---N 69
           + ++   +I   V I S+      +     IN    E+IT      ++ + K  +     
Sbjct: 1   MKSFLFWVILGTVGISSFAQ----NTPVAIINLYKNEIITKTGFDSKVDIFKKTQGRDLT 56

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
              +K  +Q LI + L  QE  K GI    + V             + E     ++KQG 
Sbjct: 57  DAEKKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRTQFGLVNFTDEQIKQMIEKQGT 116

Query: 130 GDNHFKQYLAIQSIWPDVV----KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
                   +        +V    +  F       E EI    +  K   V   + R    
Sbjct: 117 NWGELLSSMKRSLSSQKLVLKQAQPKFSEIKTPSEKEIIEYYEANKTKFVNPDISRVSHI 176

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLH- 243
                  +    + +      + R +       + K+++        G   +L   D + 
Sbjct: 177 FFSTKDKKRSDVLDQAKNILSQIRSKKITFEEAVRKYSNDESSKAKNGDLGFLSRGDQNA 236

Query: 244 ------PQFQNLLKKSQNNTTNPYVTQKGVEYIAI-----------CDKRDLGGEIALKA 286
                    + +   ++ + ++P  +++G   + +            DK     ++ +K 
Sbjct: 237 QNLLGADFVKEVFNFNKGDISSPIASKEGFHIVKVTEKYAQRFLGLNDKVSPTADLIVKD 296

Query: 287 YLSAQNTP----TKIEKHEAEYVKKLRSNAIIHY 316
            +            + + + +   KL  +A I  
Sbjct: 297 AIRNNMINVQQQQIVVQVQQDMYGKLNKSANIQI 330


>gi|319899225|ref|YP_004159318.1| peptidyl-prolyl cis-trans isomerase [Bartonella clarridgeiae 73]
 gi|319403189|emb|CBI76748.1| peptidyl-prolyl cis-trans isomerase [Bartonella clarridgeiae 73]
          Length = 317

 Score = 84.0 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/282 (10%), Positives = 71/282 (25%), Gaps = 48/282 (17%)

Query: 40  SRIRTTINGEVITDGDISK---RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGIT 96
           S +   I+G+ IT G + +    I    ++  + +     ++  +      +   K G+ 
Sbjct: 49  SHVMAVIDGKNITAGQLDELALEINPNLVRIPDEQRRVTVLKAYLNMQALAKAALKKGMD 108

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
                                                    +    +     K   + K 
Sbjct: 109 KTEAYDKR------------------------------MAVMRDNILQQLYFKEMIVDKI 138

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
            + +++   +K+        E   R +L    +                 +   +     
Sbjct: 139 ADADVKALYDKEIAALPKEDEIKARHILVKTKEEAEA-----------VIKRLNKGENFE 187

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAICD 274
              +K ++       G   Y     +   F+        N  T  P  +  G   I + D
Sbjct: 188 EVAKKDSTDGSSAVGGDLGYFSRGQMVKPFEEAAFNLKVNEYTKKPVESPFGWHVIKVED 247

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +R       +   +        I +     +  LRS   + Y
Sbjct: 248 RRLKQP--PVFDDVKDVLRTQLIRERYQTLIPDLRSEVNVQY 287


>gi|291614457|ref|YP_003524614.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sideroxydans
           lithotrophicus ES-1]
 gi|291584569|gb|ADE12227.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sideroxydans
           lithotrophicus ES-1]
          Length = 261

 Score = 84.0 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 79/275 (28%), Gaps = 47/275 (17%)

Query: 45  TINGEVITDGDISKRIALLKLQKING--ELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
            +NG  I    +  RI +   Q      E  K+   +LI   +  Q   K+G+    +  
Sbjct: 30  IVNGVSIPQARVDIRIKVAAQQGQPDSPEFRKVIRDDLINLEVISQAAVKNGLDKQPDVA 89

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                            +      +    V++         ++ 
Sbjct: 90  QQL------------------------------ELARQSVLAGAFVQDYAKSHPIGDDVL 119

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
               +     +  +EY +  +L    D   +  G ++K             K     +  
Sbjct: 120 QKEYEALKARVGNKEYKLSHILVGTEDEAKKIAGQLKK-----------GAKFAKIAKAQ 168

Query: 223 ASKI-HDVSIGKAQY-LLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           +       + G   + +  + + P  + + K  +   + P  TQ G   I + D R+L  
Sbjct: 169 SKDPGSKNNGGDLGWAVPSNFVQPFAEAVAKLKKGEVSAPVQTQYGWHIIKLEDTRELKV 228

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                  +         ++   + ++ +RS A + 
Sbjct: 229 --PTFEEMKPNLEKRLQQQAIQKEIEDMRSKAKVE 261


>gi|258510728|ref|YP_003184162.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477454|gb|ACV57773.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 314

 Score = 84.0 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/314 (8%), Positives = 82/314 (26%), Gaps = 30/314 (9%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING 70
            +I          +          +      +   +    IT  +++++           
Sbjct: 5   RWISGFVGAAAGALVVGGVWFGTYAAHGGGSVVAMVGKTPITRQELAQQSEAYAGS---- 60

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE-DFSSFLDKQGI 129
                 ++ELI   L +Q   K  +T  +  +N          G++++   +S L +  +
Sbjct: 61  ----AMLEELIANALIEQAAAKQHVTATNAEINQQLTAIEMQNGITSDAQLNSLLAQNHM 116

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
               F   +    +   + +          + +I +  ++  ++       +  + ++  
Sbjct: 117 TKAQFLNQIRDNILASKLAEAQVH----VTDKQIASYYKQNASMFTVPETRKIAIIAVKT 172

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDL----HP 244
                +   +                 +  +  +         G        +L      
Sbjct: 173 KADAEKALTE---------IQSGTPFASVAKSVSIDAATRSKGGLLGTFSLDELKAGDPA 223

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEA 302
                        ++P   Q G + +          E   A+++ +         E    
Sbjct: 224 IASTAFALKAGAVSDPVKVQGGYDIVQCQAITPQHVEPLSAVRSQIIQAIKQQNAESETK 283

Query: 303 EYVKKLRSNAIIHY 316
             V +L  +A I  
Sbjct: 284 -LVAQLAKSADIRI 296


>gi|78485440|ref|YP_391365.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomicrospira
           crunogena XCL-2]
 gi|78363726|gb|ABB41691.1| peptidyl-prolyl cis-trans isomerase D [Thiomicrospira crunogena
           XCL-2]
          Length = 638

 Score = 84.0 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/400 (10%), Positives = 103/400 (25%), Gaps = 93/400 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +      +I  +    +++ F +  I  Y        +   +NGE +T  +     
Sbjct: 1   MLQSIRNHAQGWIAWVIVGLIILTFALFGIDQYAKGDKII-VVAEVNGEDVTANEFLTLY 59

Query: 61  ALLKLQKIN------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
           +  + +  N             +L    +  LI   + +Q  +   +   +  ++     
Sbjct: 60  SRQQARLKNQFGEMYDQVVKDQQLRDEVMDALIESEVVRQWADSHNMMISNQQLSATIES 119

Query: 109 ---HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD------------------- 146
                ++     + +   L + G+    F+       I                      
Sbjct: 120 AEVFQKDGQFDQQLYQDILLQNGLNVARFEYEQRQFLIENQNRQLTMASAITNDTQLAQL 179

Query: 147 --------------VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT---------- 182
                         V +  FM +    + EI     K K   +    +            
Sbjct: 180 AALQFQQRKVNYLRVDQRPFMQEAQITDDEIQTYYNKHKEDFITPEQVVLSYVLLSKKDL 239

Query: 183 ---------VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK------------ 221
                    +L     +        +KR       ++       + +K            
Sbjct: 240 ADKVSVDDAILKRFYQDNKDQFTQPEKRQASHILVKVDAESQDAEAQKTIKEIQAKLADG 299

Query: 222 ---------FASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYI 270
                    ++         G      +  + P F + +     N  ++P  T+ G   I
Sbjct: 300 EDFAALAKTYSDDPGSANMGGDLGLFQQGMMVPAFDKAVFSMKLNEISDPVKTEFGYHLI 359

Query: 271 AICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
            +     + +     +KA +       + +K   + +++L
Sbjct: 360 KLTKIQPKKMQAFNEVKAEVETLYRRQQADKQYFDELEQL 399


>gi|134297991|ref|YP_001111487.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfotomaculum
           reducens MI-1]
 gi|134050691|gb|ABO48662.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfotomaculum
           reducens MI-1]
          Length = 344

 Score = 84.0 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/331 (12%), Positives = 99/331 (29%), Gaps = 30/331 (9%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-- 70
           +K       + IF  + ++        + +  T+NG+ IT   + K+   +  +      
Sbjct: 1   MKNKFLQGCIPIFLSLLLLLTGCANNKANVVATVNGKDITRQQLDKQTNQMVERYKQQGF 60

Query: 71  ------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
                       +LE+  + ++I + L  QE EK  +      ++       +    + E
Sbjct: 61  DLTTKENKAMKEQLEQSILDDMITKELLLQEAEKQKLIPAKEAIDKNM-AEIKKGFPNEE 119

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
           ++   L++  + +   ++ L +      + +          + EI     + K       
Sbjct: 120 EYKKALEESKVTEAELREQLILDESSRKLYEKVTADVKKPTDEEITKFYNENKGREPIGT 179

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESR---------LRLPKDCNKLEKFASKIHDV 229
             R  +  +      +Q  V KR +                +         + +  +   
Sbjct: 180 PERLEVKHMLFAINSDQPGVPKRGEKEALEAAKLALAEVTQKGRDFGVVAREKSDDLGTR 239

Query: 230 SIGKAQYLLES---DLHPQFQNLLKKSQNNTT-NPYVTQKGVEYIAICDKRDLGGE--IA 283
             G +  +            +          T  P  +  G   I +        +    
Sbjct: 240 ENGGSYTIDRGANTTDPAFEKAAENLKPGEITKEPVKSAYGFHIIKLEKVTPASTKALTE 299

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           +K  ++AQ      +    +++  LR NA I
Sbjct: 300 VKDSIAAQLEGEAKQAKFTQFIDNLRKNAKI 330


>gi|187478461|ref|YP_786485.1| peptidyl-prolyl cis-trans isomerase [Bordetella avium 197N]
 gi|115423047|emb|CAJ49578.1| peptidyl-prolyl cis-trans isomerase [Bordetella avium 197N]
          Length = 648

 Score = 84.0 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 63/230 (27%), Gaps = 14/230 (6%)

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
                ++        +  +     A D+ S ++        +          P+ V+  +
Sbjct: 173 PQEVVNNVEQALTQKRTIQLRSFLAADYRSKVNVSPQDIQAWYDANKESLRIPEQVQAQY 232

Query: 153 --------MLKYGNLEMEIPANKQKMKNITVREYLIR--TVLFSIPDNKLQNQGFVQKRI 202
                          + +I +  ++ KN        R   +L   P +         K  
Sbjct: 233 LVLDEAAATQGVQVKDEDIASYYEQNKNRFGTPEQRRASHILIEAPASGEARDKARAKAE 292

Query: 203 KDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNP 260
             A E+           +K +         G   ++  + + P  Q  +    ++  +  
Sbjct: 293 AIAREAAANPASFAELAKKDSQDAGSAARGGDLGWIAANSVPPSVQQAIDGLPKDGVSGV 352

Query: 261 YVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKL 308
             +  G   I + D +    +    +K  ++ +          AE   KL
Sbjct: 353 VESPFGFHIIKVTDIKPAQIKPLAEVKEQITNEIRKQLASARFAEMATKL 402



 Score = 59.3 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 69/241 (28%), Gaps = 22/241 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T    +++ +    V+  F IV +  Y S+  +      I G+ IT        
Sbjct: 1   MFEFIRTH-RRWMQFILLVLVVPSFAIVGVQGYSSFVNTEVELANIGGQGITQPQFDAAH 59

Query: 61  ALLKLQKIN-------------GELEKIAVQELIVETLKKQEIEKSGITFDSN---TVNY 104
                Q                  L +  + +LI + L       +  +           
Sbjct: 60  RNQLEQFRQRMGSQFDPAVIDTPALREQLLNQLIDQRLLLMVAADNRFSVSDETLRNTIA 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK-----NDFMLKYGNL 159
              Q   +   S E +   L  QG+    F+  L        V++          +  N 
Sbjct: 120 AIPQVQDDGRFSPERYRQVLAAQGLSPTSFENGLRRDLAVARVLEPIGLSARVPQEVVNN 179

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
             +    K+ ++  +      R+ +   P +        ++ ++  E+ + +        
Sbjct: 180 VEQALTQKRTIQLRSFLAADYRSKVNVSPQDIQAWYDANKESLRIPEQVQAQYLVLDEAA 239

Query: 220 E 220
            
Sbjct: 240 A 240


>gi|222839633|gb|EEE77956.1| predicted protein [Populus trichocarpa]
          Length = 390

 Score = 84.0 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/163 (11%), Positives = 44/163 (26%), Gaps = 8/163 (4%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                   E ++ +   +           R     I  +K       +K    A+E    
Sbjct: 1   IEAGITLSEDDVRSYYNQNAERLAGPEERRASHILINASKDAPAAEQEKAKAKADELLAE 60

Query: 212 LPKDCNKLEKFA-----SKIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQK 265
           L KD  +  + A           S G   Y     +   F++        + ++   +  
Sbjct: 61  LRKDPKRFAELAKANSQDGGSAASGGDLGYFGRGAMVKPFEDAAFGMKVGDISDVVHSDF 120

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
           G   I++ D +    +      +  +      ++       +L
Sbjct: 121 GYHIISLEDIK--KPKAPSFEQMRPKLEAELKQQQAQRKFAEL 161


>gi|110833403|ref|YP_692262.1| peptidyl-prolyl isomerase [Alcanivorax borkumensis SK2]
 gi|110646514|emb|CAL15990.1| peptidylprolyl isomerase [Alcanivorax borkumensis SK2]
          Length = 269

 Score = 84.0 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/279 (10%), Positives = 82/279 (29%), Gaps = 42/279 (15%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             T+  + IT  +I++ +       +N      A + L+V  L  Q+ +  G+  D    
Sbjct: 17  LITVGDQTITQDEIAQEMQYHPATDLNQAQHNAA-RALVVRQLLLQQAQTMGLAIDCEGD 75

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                                       + +   + K  + +  
Sbjct: 76  EAVISAL-------------------------------------LERELTVPKPQDEDCR 98

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC-NKLEK 221
                +  +     + L R +L +   +  +++     + +   +     P+      ++
Sbjct: 99  RFHKVEIDRFSEPCQVLTRHILLAAGPDDARSRDSQYHQGQKLIQQLRDAPQRFPELAQR 158

Query: 222 FASKIHDVSIGKAQYLLESD-LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG- 279
           F+        G+  +L     +    + L +  +     P  T+ G   + I ++R+   
Sbjct: 159 FSQCPSKDQGGELGWLQLGQTIPELDKVLQRLPEGLHARPLPTRYGWHVVHIIERRESRP 218

Query: 280 -GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
                ++  +    T     +    Y+  L ++  +  +
Sbjct: 219 LPYEQVEERVRHTLTEQATRRALRHYLLALEADIGVKGF 257


>gi|325288391|ref|YP_004264572.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324963792|gb|ADY54571.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 311

 Score = 84.0 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/281 (9%), Positives = 67/281 (23%), Gaps = 15/281 (5%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELE---KIAVQELIVETLKKQEIEKSGITFDS 99
              +N E+I   D   ++  +K    +  ++   +     L     +   +         
Sbjct: 30  VAKVNDELIAKKDFDNKLNDIKTYVQSQGVDFTTEEGKAYLQNIQGQLLSMSIQDAIIRQ 89

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
                 +  +           S             +                        
Sbjct: 90  EVKKNNWDTNIPQITEKVNQISQKNGGDLATYLKQQGLTEEDLKNTFAFAYYTGKDATVS 149

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
           E E     +   +    +         +   + + +  +++                   
Sbjct: 150 EEETRQYFEDHFDQYGGQMEQVKARHILVGTEDEAKDIIRQI--------QAGADFAALA 201

Query: 220 EKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN--TTNPYVTQKGVEYIAICDKRD 277
           ++ ++     + G+  Y     +  +F+      +    TT P  T+ G   I + D + 
Sbjct: 202 KEKSTDGSKDNGGEIDYFTRGKMVEEFEKAAFDMKIGELTTTPVKTKYGYHVIQVLDHKQ 261

Query: 278 L--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                   +K  + A        +    Y  KL   A I Y
Sbjct: 262 TVKPDYEKVKEKVQADALENAQNQKAESYYMKLAQEAKIEY 302


>gi|145589158|ref|YP_001155755.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047564|gb|ABP34191.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 263

 Score = 84.0 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 88/302 (29%), Gaps = 51/302 (16%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           +     I   + Y +    +     +NG+ I    + K +     Q  N ++     + L
Sbjct: 6   IFTASLISSALLYTTAFAQN--AAIVNGKAIPKAQLDKLVQK-SGQPDNPQVRNQGREML 62

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           + + L  QE +K G+                               Q            +
Sbjct: 63  VTKELILQEADKRGV------------------------------IQKESVREQLDQARV 92

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
             +   V ++       +      A          +EY +  +L     +       V+ 
Sbjct: 93  GILVAAVFEDYVEKDGVSEADLQAAYDSVKNQYAGKEYHVEHILVEKEGDAKAIIVQVK- 151

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTT 258
                           +  +  +       + G   ++ E  L P+F +++++      T
Sbjct: 152 ----------SGGNFEDIAKTKSKDPGSAANGGDLGWVTEKALVPEFSKSMVQLKNGQMT 201

Query: 259 -NPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTK--IEKHEAEYVKKLRSNAI 313
             P  +Q G   I + + RD        LK  L       +   +   +E ++KLR+ A 
Sbjct: 202 DKPVKSQFGWHVIKMVEVRDTKAPSYEELKPQLKQMIVSDQNWQKAKFSEMMQKLRAKAK 261

Query: 314 IH 315
           I 
Sbjct: 262 IQ 263


>gi|83745917|ref|ZP_00942974.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum UW551]
 gi|207743054|ref|YP_002259446.1| peptidyl-prolyl cis-trans isomerase protein [Ralstonia solanacearum
           IPO1609]
 gi|83727607|gb|EAP74728.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum UW551]
 gi|206594451|emb|CAQ61378.1| peptidyl-prolyl cis-trans isomerase protein [Ralstonia solanacearum
           IPO1609]
          Length = 648

 Score = 84.0 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/419 (10%), Positives = 101/419 (24%), Gaps = 107/419 (25%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   V T     + L+    V   F    +  Y  +   S     +   VIT  ++  R+
Sbjct: 1   MLDFVRTH-RRLMFLVLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDTVITTSELDARV 59

Query: 61  -------------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
                             Q    ++ +  +  +I + +   E  ++ ++     V     
Sbjct: 60  REQTERLRQMLGGQYDPRQFEGPQMRRDVLDGIIQQRMMVNEASRTNLSVADTKVRETIE 119

Query: 108 Q-------HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK----------- 149
           Q          +     + +   L  QG+    F   L  + +   + +           
Sbjct: 120 QIPAVAQLRKPDGKFDTDAYIKLLAAQGMTPEQFDARLRSELVLQQIPQSIVSSAFVPKS 179

Query: 150 ----------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
                                  D+  K    +  I A     +        ++      
Sbjct: 180 LVDRLIEARDQQREVQALLLKPADYASKVAVDDKAIQAYYDAHQQEFAVPEQVKAEYVVF 239

Query: 188 PDNKLQNQG----FVQKRIKDAEESRLRLPKDCNKL------------------------ 219
               +  Q        K   D   +R +  +                             
Sbjct: 240 SGEDMMKQIPVTPEQLKEYYDQNAARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEE 299

Query: 220 ------------EKFASKIHDV-----SIGKAQYLLESDLHPQFQNLLK--KSQNNTTNP 260
                        + A K  +        G+  +L +    PQF++ L   K   + ++ 
Sbjct: 300 VLAEVRKTPGNFAELAKKYSEDPGSAAQGGELGFLAKGATVPQFESALFALKQPGDISDV 359

Query: 261 YVTQKGVEYIAICDKRD------LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             +  G   I + + +          +  L+  +  Q    K  +    +   +   + 
Sbjct: 360 VQSDFGFHVIKLEEVKGGGVQSLEAVKPELEREVRTQLANKKYTELADAFSNGVEDQSD 418


>gi|74317550|ref|YP_315290.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057045|gb|AAZ97485.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 274

 Score = 84.0 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/318 (13%), Positives = 84/318 (26%), Gaps = 61/318 (19%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMS------------SRIRTTINGEVI--TDGDISKRI 60
           +       +I      +++                  S+   T+NG+ I    G++ KR 
Sbjct: 1   MRIALLPTLILLAFSPLAHSQTPTPTMPPAAAPAADPSKPLATVNGKEIPALYGELVKR- 59

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
            + + Q  + EL+    + LI   L  +     G+  D                      
Sbjct: 60  EMAQGQPDSPELDARVRESLINLELLSRAATDKGLDKDPRLAAAL--------------- 104

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
                                 +    +++              A  +        EY  
Sbjct: 105 ---------------DIRRKDQLAKAYLEDYIKAHPVTDAEVQAAYDKAKAGPIEPEYRA 149

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
           R +L              +   K       +  K     +K +       + G   +   
Sbjct: 150 RHIL-----------VSTEAEAKKVIADLGKKAKFETLAKKMSKDPGSAKNGGALDWADR 198

Query: 240 SDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
               P+F + L    +  TT  P  TQ G   I + D R    ++     +  +      
Sbjct: 199 RAFVPEFSEALASLKKGETTQTPVKTQFGYHVIRLDDTRQ--PKLPELNAVRDEIVKQLQ 256

Query: 298 EKHEAEYVKKLRSNAIIH 315
           ++   + V   R+NA + 
Sbjct: 257 QQRVRDAVTAARANAKVE 274


>gi|300691434|ref|YP_003752429.1| peptidylprolyl isomerase; exported protein [Ralstonia solanacearum
           PSI07]
 gi|299078494|emb|CBJ51147.1| Putative Peptidylprolyl isomerase; exported protein [Ralstonia
           solanacearum PSI07]
          Length = 265

 Score = 84.0 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/279 (13%), Positives = 66/279 (23%), Gaps = 46/279 (16%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              +NG  I    +   I     Q  + EL   A   L+   L +Q+  K G+       
Sbjct: 27  AAVVNGHAIPSAKVDALIKK-SGQPDSPELRNRARDMLVDRELIEQDAAKRGL------- 78

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                                +  +     ++         +  
Sbjct: 79  -----------------------LSRDDVQEQLTQARLNVLVAAEFEDYVKNSPTTEDEL 115

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
               ++        +      +    +   +      K   + EE             + 
Sbjct: 116 RKQYEKIKTQFGNGKEYHAHHILVDKEADAKAIIAKLKAGGNFEEIAR---------AQS 166

Query: 223 ASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDKRDL-- 278
             K    + G   +       P+F   L    +  TT  P  TQ G   I + D RD   
Sbjct: 167 KDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGETTQTPVKTQFGWHVIRLDDTRDAKI 226

Query: 279 GGEIALKAYLSAQNTPTK--IEKHEAEYVKKLRSNAIIH 315
                +K  L       +          +K LR  A I 
Sbjct: 227 PAFEDVKPQLLEMMMGDQNWQRAKFQAMLKDLREKATIK 265


>gi|86143068|ref|ZP_01061490.1| putative exported peptidyl-prolyl cis-trans isomerase
           [Leeuwenhoekiella blandensis MED217]
 gi|85830513|gb|EAQ48972.1| putative exported peptidyl-prolyl cis-trans isomerase
           [Leeuwenhoekiella blandensis MED217]
          Length = 481

 Score = 84.0 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 90/285 (31%), Gaps = 15/285 (5%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGE--LEKIAVQELIVETLKKQEIEKSGITF 97
             +   +   VI + DI + I  LK QK+ G+       + +L+ + L         +  
Sbjct: 58  DGVAAVVGEYVILESDIQQSIESLKQQKVEGQDLSTCSVMDKLMEDKLYAHHAVIDSVMI 117

Query: 98  DSN----TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
           +                   G   +    +  ++          L         ++ + +
Sbjct: 118 NEEQIRSYTQQQIDYFVNQLGSEEKVLKFYRKEKMSDLKKELLELNRNQELAKAMQQNIV 177

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
            +      EI +  ++++   + ++ +   +  I       Q   QK I      R  + 
Sbjct: 178 EEIEVTPEEIRSYYKELEEDGLPQFGVELEISKIQIIPEVPQEEKQKVIDQLNGYRNDIL 237

Query: 214 KDCNKLEKFASKIHDVSI--GKAQYLL----ESDLHPQFQNLLKK-SQNNTTNPYVTQKG 266
           ++ +     A    +     G    +     +S    +F+++     +   + P+ T+ G
Sbjct: 238 ENGSSFATKAVLWSEDESTRGDGGLIRDVDRKSQFVKEFRDVAFSLQEGEVSKPFETEFG 297

Query: 267 VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
              I +   R    +  L+  L      +  E    + ++K+R  
Sbjct: 298 YHIIKVEKIRGQKID--LRHILRIPKVTSAAEAAAKDKIEKIRKR 340


>gi|322807863|emb|CBZ05438.1| foldase protein PrsA precursor [Clostridium botulinum H04402 065]
          Length = 336

 Score = 84.0 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/332 (12%), Positives = 103/332 (31%), Gaps = 21/332 (6%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
             S    + +L     ++ F    +V     A +      +NGE I   D+ +  ++ ++
Sbjct: 1   MKSAKKLLSVLCLGIFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLDESPSMQQV 60

Query: 66  QKING------------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
                                  E +K  ++ LI E +  Q+ ++  +      +N    
Sbjct: 61  LSQIKTQYGEEFEKSEQGKEVIKEQKKQVLENLITEKVLLQKGKELKVIPKDEELNKEAD 120

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
           +          +     ++        K+ L        V++   + +          + 
Sbjct: 121 KKVNEIKAVYNNDEKKFEETLKSTGFTKETLKEYLKDQIVIE-KVINEVTKDVKVEDKDA 179

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
           QK  N     +  +    ++    ++ +   +K  K  +             +   SK  
Sbjct: 180 QKYYNENQSMFTEKPNTMNVSHILVKTEDEAKKVKKRLDAKEDFAKVAKEVSQDPGSKDK 239

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALK 285
              +G   Y   +      +  +   +   +N   TQ G   I +  K++  +    ++K
Sbjct: 240 GGLLGDINYNDANFDPTFMKAAIALKEGTISNSVHTQWGYHIIKVNSKKEYPVKKFDSVK 299

Query: 286 AYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
             +  Q    K ++   + +++ +  + I  Y
Sbjct: 300 EDIKKQLKQEKQQEAYTKKIEEWKKASKIKTY 331


>gi|322804319|emb|CBZ01869.1| foldase protein PrsA precursor [Clostridium botulinum H04402 065]
          Length = 247

 Score = 84.0 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/282 (10%), Positives = 76/282 (26%), Gaps = 39/282 (13%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
           M + I   +NG+ ITD D+   I     ++      +   +ELI + +            
Sbjct: 1   MENNIVAIVNGQEITDRDVDNTILSFPKERQTYLNTEKGREELIKQMI------------ 48

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                               E   ++       +    +     +    +++        
Sbjct: 49  ------------------DFELSYNYAKDMKFDETEDFKKQLEATKKQLLIQIAVSNVLA 90

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
              +    +K+  +           +         + +           E          
Sbjct: 91  RATVSEEESKKYYEENKEEFRTQELITARHILVDSEEEANS------IYEEIKNGLDFSE 144

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKR 276
             EK++        G         + P+F+  + +   +  T    TQ G   I + + +
Sbjct: 145 AAEKYSKCPSKAQGGSLGTFTRGQMVPEFEKAVLEAEVDKVTEAIKTQFGYHLIIVDNIK 204

Query: 277 D--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +  +     +KA +  +    K  +   E+ + LR    +  
Sbjct: 205 ESMIKPFDEVKAMIDNKLLQEKQNQQYNEFTQNLRDKYTVEI 246


>gi|37527725|ref|NP_931070.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36787161|emb|CAE16237.1| Peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 623

 Score = 84.0 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/399 (8%), Positives = 93/399 (23%), Gaps = 87/399 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y +    S     +NG+ I+   + +  
Sbjct: 1   MMDNLRTAANSPVLKIVLALIILSFVLTGVGGYLTSGAGSY-AAEVNGQAISRAQLEQAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLK------------------ 86
              +                      ++   A+  LI   L                   
Sbjct: 60  QQERNALQEQLGDKFSVLASDEQSMKQIRNQALDRLINNALIDQYSRELGLSASDEQVKD 119

Query: 87  ------------KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
                       K +  K     +   ++           L  +          I     
Sbjct: 120 SIRNTSYFQTDGKFDNNKYLELLNRFNMSPDIFAEQTRQNLVNQQLIMAFSGSEIALPGE 179

Query: 135 KQYLAIQSIWPDVVK------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
            +  A   +     +           +    + ++       K+  +    ++     + 
Sbjct: 180 VKLNAELLLQQRTARIATLELKKIQAQQEVTDKDLQDYYNLNKSSFIASEEVKISYIKMD 239

Query: 189 D------------NKLQNQGFVQKRIKDAEESRLRLPKDCN------------------- 217
                        +         KR    E+ +  L +                      
Sbjct: 240 AVDEMNKVSATSADVDAYYEHNLKRYTQPEQKKYSLIQLATESEARTVFDELNKGADFGK 299

Query: 218 -KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
              +K   K    + G+  ++ E  L  + +    K +   ++      G     + D +
Sbjct: 300 LATKKSTDKFSAKNHGEIGWMEEDALPEELKQANLKEKGQISSVIKVPNGFAIFHLDDVK 359

Query: 277 D--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
              +     +++ +       K         +K+   A 
Sbjct: 360 PQIIKPLSEVRSEIEKMVKQEKAVDAFYALQQKVSDAAT 398


>gi|83719320|ref|YP_442657.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Burkholderia thailandensis E264]
 gi|167581594|ref|ZP_02374468.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           thailandensis TXDOH]
 gi|167619710|ref|ZP_02388341.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           thailandensis Bt4]
 gi|257138870|ref|ZP_05587132.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Burkholderia thailandensis E264]
 gi|83653145|gb|ABC37208.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           thailandensis E264]
          Length = 259

 Score = 84.0 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 80/278 (28%), Gaps = 48/278 (17%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKING--ELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I        IA L  Q      +LE+   QEL+   +  QE  K GI    +
Sbjct: 25  IAVVNGTPIPKSRADAMIAQLVQQGQQDTPQLEQAVRQELVNREILMQEAIKRGIPNRPD 84

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q+     +  DF+ K    +
Sbjct: 85  VKAQIV-------------------------------VAQQTAVLRALIEDFLKKNQPSD 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+ A    +             +              +++ KD         K  +  +
Sbjct: 114 TELKARYDDLVKNAGGREYHLHHILVDN----------EQQAKDLIAKIKGGAKFEDLAK 163

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAICDKRD 277
           +++       + G   +       P+F    +   +   T+ P  TQ G   I + D R+
Sbjct: 164 QYSKDPGSAKNGGDLDWSDPKAYVPEFAAAAQHLQKGQMTDTPVKTQFGWHIIRVDDIRN 223

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +         +  Q     +++    + + LR  A I 
Sbjct: 224 ITP--PPFEQVKQQIAQQMVQQKLQAFEEGLRQQAKIQ 259


>gi|317012021|gb|ADU82629.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori
           Lithuania75]
          Length = 299

 Score = 84.0 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/281 (10%), Positives = 76/281 (27%), Gaps = 29/281 (10%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            S+ +  T++G  IT  D    I          +L++   + LI + +            
Sbjct: 40  SSAGVLATVDGRPITKSDFD-MIKQRNPNFDFDKLKEKEKEALIEQAI-------RTALV 91

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
           ++               +        L +                      + + + K  
Sbjct: 92  ENEAKTEKLDSTPEFKAMMEAVKKQALVEFWAKK-----------------QAEEVKKVQ 134

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E E+       K+    +         +       +   +   +   +   +  +  N
Sbjct: 135 IPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELAN 194

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDK 275
           +     +  +  + G      ++ + P F +     +  + T  P  T+ G   I +  K
Sbjct: 195 RDTIDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGDYTKTPVKTEFGYHIIYLISK 254

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                      K  +         ++   + +++LR  A I
Sbjct: 255 DSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEELRKRAKI 295


>gi|168185280|ref|ZP_02619944.1| peptidil-prolyl isomerase family protein [Clostridium botulinum Bf]
 gi|237793360|ref|YP_002860912.1| peptidil-prolyl isomerase family protein [Clostridium botulinum Ba4
           str. 657]
 gi|182671671|gb|EDT83632.1| peptidil-prolyl isomerase family protein [Clostridium botulinum Bf]
 gi|229264108|gb|ACQ55141.1| peptidil-prolyl isomerase family protein [Clostridium botulinum Ba4
           str. 657]
          Length = 247

 Score = 84.0 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/282 (10%), Positives = 77/282 (27%), Gaps = 39/282 (13%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
           M + I   +NG+ ITD D+   I     ++      +   +ELI + +            
Sbjct: 1   MENNIVAIVNGQEITDRDVDNTILSFPKERQTYLNTEKGREELIKQMI------------ 48

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                               E   ++       +    +     +    +++        
Sbjct: 49  ------------------DFELSYNYAKDMKFDETEDFKKQLEATKKQLLIQIAVSNALA 90

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
              +    +K+  +           +         + +        +  E          
Sbjct: 91  RATVSEEESKKYYEENKEEFRTQELITARHILVDSEEEA------NNIYEEIKNGLDFSE 144

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKR 276
             EK++        G         + P+F+  + +   +  T    TQ G   I + + +
Sbjct: 145 AAEKYSKCPSKAQGGSLGTFTRGQMVPEFEKAVLEAEVDKVTQAIKTQFGYHLIIVDNIK 204

Query: 277 D--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +  +     +KA +  +    K  +   E+ + LR    +  
Sbjct: 205 ESMIKPFDEVKAMIDNKLLQEKQNQQYNEFTQNLRDKYTVEI 246


>gi|325851850|ref|ZP_08171015.1| PPIC-type PPIASE domain protein [Prevotella denticola CRIS 18C-A]
 gi|327312553|ref|YP_004327990.1| PPIC-type PPIASE domain-containing protein [Prevotella denticola
           F0289]
 gi|325484692|gb|EGC87605.1| PPIC-type PPIASE domain protein [Prevotella denticola CRIS 18C-A]
 gi|326946030|gb|AEA21915.1| PPIC-type PPIASE domain protein [Prevotella denticola F0289]
          Length = 480

 Score = 83.6 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/268 (10%), Positives = 72/268 (26%), Gaps = 14/268 (5%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--GELEKIAVQELIVETL 85
           VP  + ++  +   +   +  E I   ++       + + +   G+ E +  +++ V+ L
Sbjct: 42  VPAATDRANNVVDEVIWVVGDEPILKSEVEIMKLQGEAEGMKWDGDPECVLPEQIAVQKL 101

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTG--LSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
              +     I    + +     Q                  + Q       +Q L     
Sbjct: 102 FLHQAALDSIEVTESEIAQGIDQQINYWISLPQIGSKEKLEEFQHKSMAQIRQDLHDDYK 161

Query: 144 WPDVVKN---DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
              +V+      +        E+    +K+   ++        +  +          + +
Sbjct: 162 NRQLVQKMQEKLVSDVKVSPAEVREYFRKLPVDSIPMIPTTVEVEILTQTPKVEPEEINR 221

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIH-----DVSIGKAQYLLESDLHPQFQNLLKKSQN 255
                 +   R+ K        A             G+  Y+    L P F        +
Sbjct: 222 IKNQLRDYTDRITKGETSFATLARLYSEDPGSARQGGELGYMGRGMLDPAFAAAAFNLTD 281

Query: 256 --NTTNPYVTQKGVEYIAICDKRDLGGE 281
               +    ++ G   I + D+R     
Sbjct: 282 PKKVSKVVESEFGYHIIQLIDRRGDKVN 309


>gi|212640109|ref|YP_002316629.1| Parvulin-like peptidyl-prolyl isomerase (molecular chaperone)
           [Anoxybacillus flavithermus WK1]
 gi|212561589|gb|ACJ34644.1| Parvulin-like peptidyl-prolyl isomerase (molecular chaperone)
           [Anoxybacillus flavithermus WK1]
          Length = 288

 Score = 83.6 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/284 (9%), Positives = 78/284 (27%), Gaps = 40/284 (14%)

Query: 36  WAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGI 95
               S +        IT  ++   +             K  +++L+ E +  ++ + +  
Sbjct: 30  CNNGSDVVVETKEGNITKEELYNEMK--------ERYGKDVLRDLVHEKVLSKKFKVTDE 81

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
             +    N   +   +      ++                  +        + +   M  
Sbjct: 82  ELNKEIENLKEMYGIQYDLAVQQNGEEA--------------IRDMVKLDLLRQKAAMED 127

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
               + E+     + K      +++                  +K  KD +    +    
Sbjct: 128 IKVTDEELKKYYNEYKPKVKASHIL---------------VDDEKTAKDIKAKLEKGEDF 172

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAIC 273
               ++++       + G   +     +  +F+      +    ++P  TQ G   I + 
Sbjct: 173 AKLAKEYSKDTGSAQNGGDLGWFGPGKMVEEFEKAAYALNVGEISDPVKTQFGYHIIKVT 232

Query: 274 DKRDLGGEIALKAYLSAQNTPTKIE-KHEAEYVKKLRSNAIIHY 316
           DK        +K  +  +   +K++       + +L   A +  
Sbjct: 233 DKEKKKSFDEMKEEIEFEVKKSKLDTSKVQSKLDELMKEANVDI 276


>gi|288924570|ref|ZP_06418507.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae D17]
 gi|288338357|gb|EFC76706.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae D17]
          Length = 474

 Score = 83.6 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/302 (10%), Positives = 89/302 (29%), Gaps = 40/302 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           + T  +L+   +   ++Y   A +  +  T+NG  ++  +              G ++K 
Sbjct: 1   MKTATLLVAMLLCGSMAY---AQNDPVVMTVNGAPVSRSEFEYSYN---KNNSEGVIDKK 54

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            V E +   +                          N  L  +                 
Sbjct: 55  TVGEYVDLFV--------------------------NYKLKVQAALDARLDTMSSFKKEF 88

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    Q + P +V             +I    Q+  +          +L  +  N  + Q
Sbjct: 89  REYRDQQVRPTLVT---DADVEAKARDIYRETQQRVDGGGGLLKTSHILLLLDQNATKTQ 145

Query: 196 GFVQKRIKD-AEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK- 252
               K   D    +  +     +   + +      V+ G+  ++  + L   ++++    
Sbjct: 146 QDAAKARIDSVYNALKKGADFADLARRLSDDKSSAVNGGQLPWIERNQLVKAYEDVAYAL 205

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
            +   + P++++ G   + + DK+      ++K  +        +         +L+  A
Sbjct: 206 KKGEISKPFLSEYGYHIVKLDDKQPFFPYDSVKTSIYQFIESRGLRDAIVT--DRLQEEA 263

Query: 313 II 314
            +
Sbjct: 264 KV 265


>gi|254252165|ref|ZP_04945483.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa
           AUO158]
 gi|124894774|gb|EAY68654.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa
           AUO158]
          Length = 260

 Score = 83.6 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 85/278 (30%), Gaps = 47/278 (16%)

Query: 43  RTTINGEVITDGDISKRIALL--KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I        +A L  + Q  + +L++   QEL+   +  QE  + GI    +
Sbjct: 25  IAVVNGTPIPKSRADAMVAQLVQQGQTDSPQLQQAVRQELVNREILMQEAIREGIPNRPD 84

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q++    +  +F+ K    +
Sbjct: 85  VKAQV-------------------------------AVAQQTVVLRAMIENFLKKNQPTD 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+ A   ++                            +++ K+         K  +  +
Sbjct: 114 AEVKARYDELVKGAGGNREYHLHHIL---------VDSEQQAKELIAKIKAGAKFEDLAK 164

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAICDKRD 277
           +++       + G   +       P+F    +K  +   T+ P  TQ G   I + D RD
Sbjct: 165 QYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDQPVKTQFGWHIIRVDDIRD 224

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +         + AQ     +++    + + LR  A I 
Sbjct: 225 IAP--PPFDQVKAQIAQQIVQQKLQAFEEGLRQQAKIQ 260


>gi|187477572|ref|YP_785596.1| protein foldase [Bordetella avium 197N]
 gi|115422158|emb|CAJ48682.1| putative protein foldase [Bordetella avium 197N]
          Length = 258

 Score = 83.6 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 88/278 (31%), Gaps = 46/278 (16%)

Query: 43  RTTINGEVITDGDISKRIALLKLQ--KINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
             T+NG+ I+   +   + LL  Q    + +L     QE+I   +  Q  EK GI    +
Sbjct: 22  VATVNGKAISQKSVDDFVKLLVTQGATDSPQLRDQVKQEMINRQVFVQAAEKQGIAKQVD 81

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
           T                                    LA Q I    +  D++ K+   +
Sbjct: 82  TQTEI-------------------------------ELARQGILVRALMADYLKKHPVTD 110

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+ A  +K+K     +         + D K  N    Q +            K  +  +
Sbjct: 111 AEVKAEYEKIKKEQAGKQEYDVRHILVEDEKTANDLLAQIKSGK--------LKFEDAAK 162

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT-NPYVTQKGVEYIAICDKRD 277
           K++         G   +   S+  P F + + K  +      P  TQ G   I   D R 
Sbjct: 163 KYSKDPGSAERGGDLGWAPASNYVPPFADAITKLKKGEIADKPVQTQFGWHIIQEKDAR- 221

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
              E      + +Q      ++    + K+LR  A + 
Sbjct: 222 -AVEFPPLDQVRSQLEEMMRQQKLNAFQKELREKAKVQ 258


>gi|196036230|ref|ZP_03103629.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus W]
 gi|218902361|ref|YP_002450195.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus AH820]
 gi|228926303|ref|ZP_04089377.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228944873|ref|ZP_04107236.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|195991205|gb|EDX55174.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus W]
 gi|218539904|gb|ACK92302.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus AH820]
 gi|228814901|gb|EEM61159.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228833400|gb|EEM78963.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 285

 Score = 83.6 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/304 (9%), Positives = 75/304 (24%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + +++      SS    T     IT  D  K++             K  
Sbjct: 4   KHIFIITALISILMLAACGQKNSSATVATATDSTITKSDFEKQLK--------DRYGKDM 55

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           + E+I + +  ++ + S    +            +   +   +                 
Sbjct: 56  LYEMIAQDVITKKYKVSDDDVEKEVQKAKSQYGDQFKNVLKNNGLKDEADF--------- 106

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 107 --KNQIKFKLSMNKAIKQSVTEKDVKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ ++            ++ +  +      G   Y     + P+F+    K   
Sbjct: 145 SDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFHSGAMTPEFETAAYKLKI 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              ++P  +  G   I +  K+DL     +K  +       +        + ++     A
Sbjct: 205 GQISDPVQSPNGYHIIKLTGKKDLKPYDEVKNSIRKNLEEERTADPIFGKKLLQSELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|146296230|ref|YP_001180001.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409806|gb|ABP66810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 335

 Score = 83.6 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/285 (10%), Positives = 86/285 (30%), Gaps = 20/285 (7%)

Query: 39  SSRIRTTINGEVITDGDISKRIAL---------------LKLQKINGELEKIAVQELIVE 83
            +R    +NGE IT  + S                    +  +    ++++  +  LIV 
Sbjct: 34  ENRAVAIVNGEKITKKEFSINYKSQIDYYGLDKAFLAQKVGSKTYEEQIKENVLDGLIVR 93

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            ++ Q+ +K  I   +        Q  +              +        +     Q I
Sbjct: 94  QIELQQAKKRNIILTAQEKKAIEDQINQYKNDPQNGLQF--KQYLQTIGATEDEYKDQII 151

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
              +V   F     N    +   +    +       ++        +  + +   +K+ +
Sbjct: 152 KSQIVSKLFNELTKNQTASMFEIESYYNSHKTDYIKVKASHILFKVSDSKEETTKKKKAE 211

Query: 204 DAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYLLESDLHPQFQNLLKKS-QNNTTNPY 261
           +  +            +K++   +     G   Y  + ++  +F+++         +   
Sbjct: 212 EVLQMIKNGQNFEKLAKKYSEDENTKQKGGDLGYFRKGEMVKEFEDVAFSLGIGEISGIV 271

Query: 262 VTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
            T  G   I + D++ L     +K  + +     K +++    ++
Sbjct: 272 KTSYGFHIIKVTDRKQLALN-DVKDEIKSTIETQKKQQYFQSLIE 315


>gi|228938382|ref|ZP_04100992.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228971261|ref|ZP_04131889.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977871|ref|ZP_04138252.1| Foldase protein prsA 2 [Bacillus thuringiensis Bt407]
 gi|228781788|gb|EEM29985.1| Foldase protein prsA 2 [Bacillus thuringiensis Bt407]
 gi|228788411|gb|EEM36362.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228821244|gb|EEM67259.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326938890|gb|AEA14786.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 285

 Score = 83.6 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/304 (11%), Positives = 80/304 (26%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + ++S       S    T     +T  D  K+   LK +     L ++ 
Sbjct: 4   KHIFIITALISILMLSACGQKNGSATVATATDSTVTKDDFEKQ---LKDRYGKDMLYEMM 60

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
            Q++I +  K               VN    +  +  G        F           ++
Sbjct: 61  AQDVITKKYK----------VPDEEVNKEIEKVKKQYG------DQFKKVLENNRLKDEE 104

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 105 DFKNQIKFKLAMNEAIKKSITEKDVKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ +             ++ +  +      G   Y     + P+F+    K + 
Sbjct: 145 SDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFNSGTMAPEFETAAYKLNV 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              +NP  +  G   I + DK+DL     +K  +       +        + +++    A
Sbjct: 205 GQISNPVKSSNGYHVIKLTDKKDLKPYDEVKNSIRKNLEEERTADPAFSQKLLQEELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|139439422|ref|ZP_01772863.1| Hypothetical protein COLAER_01883 [Collinsella aerofaciens ATCC
           25986]
 gi|133775201|gb|EBA39021.1| Hypothetical protein COLAER_01883 [Collinsella aerofaciens ATCC
           25986]
          Length = 407

 Score = 83.6 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/352 (9%), Positives = 112/352 (31%), Gaps = 45/352 (12%)

Query: 4   KVFTSLSDFIKLLTTYFVLIIFCIVPI----------VSYKSWAMSSRIRTTINGEVITD 53
           K + S +  I L+    + ++  +  +           +   + ++  +  TING  +T+
Sbjct: 30  KTYVSKTVKIVLVVIGVLAMLLSVSAMACSGLMSQTESASSGYKLTGGVAATINGTNLTE 89

Query: 54  GDISKRIALLKLQK-----------------INGELEKIAVQELIVETLKKQEIEKSGIT 96
             ++K+I  ++                       +  K  +     + L +Q  +++G+T
Sbjct: 90  DTVTKQIMSMRTSYGYTKDKDWAQYLVDNDLTPKKYRKQLIDSYAQQILLQQAQKENGVT 149

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
                V   +    ++ G +     +             +    +S+    +K+      
Sbjct: 150 VSDEEVEKAWKDACKSAGGAKAFKKTLKT--YGYTEDTYKDSLKESLAQQKLKDAVAPTS 207

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN-KLQNQGFVQKRIKDAEESRLRLPKD 215
              + EI     +  +          +L  +  +   +++   + + ++  +        
Sbjct: 208 KPKDSEIVDYINENLSNYNDARRSSNILIKVDSDASDEDKAAAKAKAQECLDKINSGELS 267

Query: 216 CNKL-EKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIA- 271
                E+++         G   +   +     +Q      ++ + ++   +  G   I  
Sbjct: 268 FEDAVEQYSDDTGSKDKKGDVGWDKLTTFVDSYQAALEGLNKGDVSDVVESTYGYHIIKC 327

Query: 272 ---------ICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                    + D + +  +  +K Y+S            +E++++ + +A I
Sbjct: 328 TDYFHVDNQVDDIKQVPKD--IKKYVSNVVKTQAASTAYSEWLEQYKKDADI 377


>gi|154174986|ref|YP_001408954.1| ferric receptor CfrA [Campylobacter curvus 525.92]
 gi|153793160|gb|EAU01437.2| ferric receptor CfrA [Campylobacter curvus 525.92]
          Length = 291

 Score = 83.6 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 102/320 (31%), Gaps = 35/320 (10%)

Query: 1   MTSKVFTSL--SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK 58
           M   +FT+     FI     +F   +   + + S     M + I   +  E IT  ++ +
Sbjct: 1   MAQIIFTNYLNKGFIMTKKLFFAASVCAALNLFS---AQMVNGIAAIVENEPITLYEVYQ 57

Query: 59  RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
               LK  +        A+  LI + L++ +I+  GI+     VN      A+  G+++ 
Sbjct: 58  LKEQLKTDES------QALNLLIRDRLEQAQIKNLGISVTPFEVNERIDAIAKQNGMTST 111

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
            F S ++ QG     FK  +  + +   + +N       N+  E      +        +
Sbjct: 112 QFRSSVESQGTSFTDFKNEVEKKMLQEKLYRNIASEAGKNVTDERAKAYYEANKEQFNIF 171

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
               ++     +  + +    K           L  +                       
Sbjct: 172 NSAEIVLFRAASMQELENQRGKLSPLKGVQAQNLTLEYQSAN------------------ 213

Query: 239 ESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTK 296
                     +   +  + T  + TQ+G +   + +K          +K  +       +
Sbjct: 214 ----PQLASIIANTAIGDFTQIFKTQEGFDMFYVKNKIGSYTPSFDQIKDEIINSLYQNE 269

Query: 297 IEKHEAEYVKKLRSNAIIHY 316
            +K   +Y  KLR+ A +  
Sbjct: 270 QQKTMQDYFDKLRAKAKVQI 289


>gi|218896199|ref|YP_002444610.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus G9842]
 gi|228964209|ref|ZP_04125331.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|218545279|gb|ACK97673.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus G9842]
 gi|228795460|gb|EEM42945.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 285

 Score = 83.6 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/304 (11%), Positives = 80/304 (26%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + ++S       S    T     +T  D  K+   LK +     L ++ 
Sbjct: 4   KQIFIITALISILMLSACGQKNESATVATATDSTVTKDDFEKQ---LKDRYGKDMLYEMM 60

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
            Q++I +  K               VN    +  +  G        F           ++
Sbjct: 61  AQDVITKKYK----------VSDEEVNKEVEKVKKQYG------DQFKKVLENNGLKDEE 104

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 105 DFKNQIKFKLAMNEAIKKSITEKDVKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ +             ++ +  +      G   Y     + P+F+    K + 
Sbjct: 145 SDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFNSGTMAPEFETAAYKLNV 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              +NP  +  G   I + DK+DL     +K  +       +        + +++    A
Sbjct: 205 GQISNPVKSSNGYHVIKLTDKKDLKPYDEVKNSIRKNLEEERTADPVFSKKLLQEELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|15644804|ref|NP_206974.1| cell binding factor 2 [Helicobacter pylori 26695]
 gi|2499779|sp|P56112|Y175_HELPY RecName: Full=Uncharacterized protein HP_0175; Flags: Precursor
 gi|2313264|gb|AAD07245.1| cell binding factor 2 [Helicobacter pylori 26695]
          Length = 299

 Score = 83.6 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/281 (10%), Positives = 77/281 (27%), Gaps = 29/281 (10%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            S+ +  T++G  IT  D    I          +L++   + LI + +            
Sbjct: 40  SSAGVLATVDGRPITKSDFD-MIKQRNPNFDFDKLKEKEKEALIDQAI-------RTALV 91

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
           ++               +        L +                      + + + K  
Sbjct: 92  ENEAKTEKLDSTPEFKAMMEAVKKQALVEFWAKK-----------------QAEEVKKVQ 134

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E E+       K+    +         +       +   +   +   +   +  +  N
Sbjct: 135 IPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELAN 194

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDK 275
           +     +  +  + G      ++ + P F +     +  + T  P  T+ G   I +  K
Sbjct: 195 RDTIDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGDYTKTPVKTEFGYHIIYLISK 254

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                      K  +         ++   + +++LR +A I
Sbjct: 255 DSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEELRKHAKI 295


>gi|153873081|ref|ZP_02001781.1| survival protein SurA [Beggiatoa sp. PS]
 gi|152070452|gb|EDN68218.1| survival protein SurA [Beggiatoa sp. PS]
          Length = 328

 Score = 83.6 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 87/278 (31%), Gaps = 7/278 (2%)

Query: 45  TINGEVITDGDISKRIALLKLQKINGELEKIAVQELI---VETLKKQEIEKSGITFDSNT 101
            +N   ITD +I   +A    Q      E   +  LI        +    K     +   
Sbjct: 38  VMNRITITDREIENFLATQTQQGTISN-EYHILHILIATPEAPSPENITLKQQKAEEVVA 96

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
                          ++   +            +       +   +  ++      +   
Sbjct: 97  KLKQGADFEATAVAISDSRQALDGGDLGWLKAGEMPTLFDGVVNQMKVDEIKGPLRDSSG 156

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
                  + +   +     +     +  N+L +   ++ R+K+ +             E 
Sbjct: 157 FHIIKLVEKRGGKIAITQTKARHILMKTNELMSDVEIEFRLKEIKSRIELGDDFAKLAEA 216

Query: 222 FASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD-L 278
           ++         G   ++   DL  +F+ ++   S N  ++P+ ++ G   + + ++R   
Sbjct: 217 YSEDTGSAAKGGSLGWVNPGDLATEFEAVMNDLSVNKVSDPFKSRFGWHIVQVLERRQHD 276

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             E AL+   + Q    K+ +    ++++LR  A I Y
Sbjct: 277 NTEQALRYQAARQIHQRKVYEELEAWLRQLRDQAYIDY 314


>gi|260682966|ref|YP_003214251.1| putative peptidyl-prolyl isomerase [Clostridium difficile CD196]
 gi|260686564|ref|YP_003217697.1| putative peptidyl-prolyl isomerase [Clostridium difficile R20291]
 gi|296451354|ref|ZP_06893092.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP08]
 gi|296880296|ref|ZP_06904261.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP07]
 gi|260209129|emb|CBA62320.1| putative peptidyl-prolyl isomerase [Clostridium difficile CD196]
 gi|260212580|emb|CBE03572.1| putative peptidyl-prolyl isomerase [Clostridium difficile R20291]
 gi|296259770|gb|EFH06627.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP08]
 gi|296428739|gb|EFH14621.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP07]
          Length = 261

 Score = 83.6 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/281 (11%), Positives = 77/281 (27%), Gaps = 46/281 (16%)

Query: 38  MSSRIRTTINGEVITDGDISKRIA----LLKLQKINGELEKIAVQELIVETLKKQEIEKS 93
           M  ++  T+  + IT+ DI   +        +Q    E +K  + +L+ + L   + ++ 
Sbjct: 11  MEKKVLATVGEKEITNIDIENALKSLDPYQAMQFKTEEGKKHLLNDLVNQELFFLDAKE- 69

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
                                                    +     +++      N  +
Sbjct: 70  ------------------------------EKLDEEEIFKLEMKKIEENVLKQFAINKVL 99

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                 E E     +  K+   +          +  ++   +   Q + ++         
Sbjct: 100 SSVNVTEDEKVKFFEANKSSFSKPESATAKHILVDSDEKAKEILAQIKSEEI-------- 151

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAI 272
              +   K +S       G         + P+F+      ++   + P  TQ G   I +
Sbjct: 152 SFEDAALKHSSCPSKDMGGDLGTFGRGQMVPEFEEAVFSMAKGEVSEPVKTQFGYHIIKL 211

Query: 273 CDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            D ++        +KA +       K  +     +  L + 
Sbjct: 212 EDLQESTESTFDEVKAEVEKSLLYQKQNEVYGNKINALNAK 252


>gi|299142781|ref|ZP_07035910.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Prevotella oris
           C735]
 gi|298575810|gb|EFI47687.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Prevotella oris
           C735]
          Length = 464

 Score = 83.6 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/289 (11%), Positives = 82/289 (28%), Gaps = 17/289 (5%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--GELEKIAVQELIVETLKKQE 89
           S    ++   +   +  E I   D+ +     +++ +   G  +    +++ V+ L   +
Sbjct: 30  SVPEHSVIDEVVWVVGDEPIMKSDVEQMRLQGEMEGMKWGGNPDCRIPEQIAVQKLFLHQ 89

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
                I    + +     Q       SA       + QG   +  +  L        +++
Sbjct: 90  AALDSIEVTESDIAQTVEQQINYWINSAGSREKLEEYQGKSLSQIRSDLHDDVKNSKMIQ 149

Query: 150 N---DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
                 M        ++    + +   ++        +  +       Q  + +      
Sbjct: 150 QMKRKIMSDVTVTPADVRRYFKNLPEDSIPFVPTEVEVEILVKKPRIPQSEINRVKDQLR 209

Query: 207 ESRLRLPKDCNKLEKFASKIH-----DVSIGKAQYLLESDLHPQFQNLLKKSQN--NTTN 259
               R+ K        A             G+  Y     L P F ++     +    + 
Sbjct: 210 SFTDRVTKGETSFSTLARLYSEDPGSARQGGEMDYAGRGTLDPAFASVAFNLTDPKKISK 269

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
              ++ G   I + DKR   G+     ++     P    +   + + +L
Sbjct: 270 IVESEFGYHIIQLVDKR---GDKVKVRHIL--LKPKVSAEDLNKALGRL 313


>gi|302876603|ref|YP_003845236.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           cellulovorans 743B]
 gi|307687277|ref|ZP_07629723.1| peptidylprolyl isomerase [Clostridium cellulovorans 743B]
 gi|302579460|gb|ADL53472.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           cellulovorans 743B]
          Length = 342

 Score = 83.6 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/338 (11%), Positives = 98/338 (28%), Gaps = 32/338 (9%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSR---IRTTINGEVITDGDISKRIALLKL 65
           +    KL+T   +  +        +     +++   +   +  E IT GD+ + I  +  
Sbjct: 1   MKSIKKLVTAALIGAMVVGATGCGFLEKTETNKAKEVVAKVGDEKITKGDVDEEIKYMIE 60

Query: 66  QKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
           Q                    E  K  +  L+   L  Q ++ + I  + + +       
Sbjct: 61  QAKTQYGEDYASNEEAMKGINEQRKTTLSALVDLKLLLQYVKDNNIEINEDEMEAEVDNA 120

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML------KYGNLEMEI 163
            +              ++ + DN +        I    + +          +  + +++ 
Sbjct: 121 YKQARDQYGSGDDATFEKLLQDNGYTLEKYKDDIKNAYISSKAREAMSKGAEVTDADIDA 180

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKF 222
              K +          ++ +L  +  +        +K+I DA  + ++      +  +K+
Sbjct: 181 SFKKDEFLTQNANAKFVQYLLCKVESSATPEDRAAKKKIADAALAEIKGGLSFTDAAKKY 240

Query: 223 ASKIH-DVSIGKAQYLLESD-LHPQFQNLLKK-SQNNTTNPYVTQ-KGVEYIAICDKRDL 278
           +       + G    +     L   F+N+    +    +        G   I      + 
Sbjct: 241 SDDPSTKDNGGYLGAVTSESGLVEGFKNVAIGLNPGQMSEVVDEPTFGFFIIKSISTDEA 300

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                 K         TK  +   E +++LR      Y
Sbjct: 301 IAFEKEKQ--KTTLLQTKQSEKAEEILQQLRDEKSTKY 336


>gi|194366009|ref|YP_002028619.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stenotrophomonas
           maltophilia R551-3]
 gi|194348813|gb|ACF51936.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stenotrophomonas
           maltophilia R551-3]
          Length = 299

 Score = 83.2 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/271 (8%), Positives = 74/271 (27%), Gaps = 40/271 (14%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           ++   I++ DI++ +   +      +    A + L+V  L + E ++ G           
Sbjct: 48  VDETAISEADIAREMQHHRA-MRPEQSRAEAARALVVRELLRLEAQRLG----------- 95

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
                                  +      +    + +   ++++    +    E     
Sbjct: 96  -----------------------LQAPEGNRVSDEEVLIQQLLEDAIEDRVPTDEDCRRY 132

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD--CNKLEKFA 223
            +Q  +     + +    +            F  +   +     L+       +   + +
Sbjct: 133 FEQNPERFRSPDRVRLRHILLAAPADDVAGRFAARTEGERLVGLLKESPHLFADFALRHS 192

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN-PYVTQKGVEYIAICDKRD--LGG 280
                   G   +L      P+F   + + +      P  ++ G   + +  + +     
Sbjct: 193 RCPSSSEGGDLGWLQRGQTTPEFDRQVFRLREGLAGFPVESRWGYHVVCVDAREEGQPQP 252

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             A+   L         ++    Y+ +L+  
Sbjct: 253 FEAVLPQLRDYLELQVRQREVQAYLLQLQER 283


>gi|261837623|gb|ACX97389.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori 51]
          Length = 299

 Score = 83.2 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 81/281 (28%), Gaps = 29/281 (10%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            S+ +  T++G  IT  D    I          +L++   + LI + ++   +E    T 
Sbjct: 40  SSAGVLATVDGRPITKSDFD-MIKQRNPNFDFDKLKEKEKEALIDQAIRTALVENEAKT- 97

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                             + E  +     +      F              + + + K  
Sbjct: 98  -------------ERLDSTPEFKAMMEAVKKQALVEFWAKK----------QAEEVKKIQ 134

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E E+       K+    +         +       +   +   +   +   +  +  N
Sbjct: 135 IPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELAN 194

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDK 275
           +     +  +  + G      ++ + P F +     +  + T  P  T+ G   I +  K
Sbjct: 195 RDTIDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGDYTKTPVKTEFGYHIIYLISK 254

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                      K  +         ++   + +++LR +A I
Sbjct: 255 DSPVTYTYDQAKPTIKGMLQEKLFQERMNQRIEELRKHAKI 295


>gi|322381189|ref|ZP_08055192.1| molecular chaperone lipoprotein-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154765|gb|EFX47036.1| molecular chaperone lipoprotein-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 351

 Score = 83.2 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/311 (10%), Positives = 92/311 (29%), Gaps = 14/311 (4%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTI-NGEVITDGDISKRIAL------- 62
             +       + +I  +  +           +  T      +T G+++K I +       
Sbjct: 7   RILNKWILALITVILTVSVLSGCGKDKGDKEVVATYKENGKVTRGELNKLIGMNNIFNPA 66

Query: 63  LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
            K    +   ++  ++++I+    + + + +        V     Q  +           
Sbjct: 67  YKQFAEDPAYQQSMLKQIIMFKEAEAKADDAAKKEADKKVQDQMKQMKQILDQQEGGADK 126

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
            L  + +     +  L          +            +    ++           I  
Sbjct: 127 VLKDEKMELKDIENILKQNFYASKEFEKQVTEDETKKAYDENLAQEPNAYEVEDVSHILI 186

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESD 241
            L       L+N+   + R  + +    +        ++++         GK + +  S 
Sbjct: 187 GLKDQEGKDLRNKDEAKTRALEVKGKLEKGEDFAALAKEYSDDPGSKDKGGKYEKVDYSQ 246

Query: 242 L----HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
           +     P  Q      +N  ++P  T  G   + + +++    +  +K  + +Q +  K+
Sbjct: 247 MMQFVEPFKQAAWSLEENKISDPVETDYGYHIMKVENRKKQTYDE-VKDQIRSQLSQKKM 305

Query: 298 EKHEAEYVKKL 308
             +  + V KL
Sbjct: 306 RDYIEQEVPKL 316


>gi|163751873|ref|ZP_02159087.1| peptidyl-prolyl cis-trans isomerase D [Shewanella benthica KT99]
 gi|161328223|gb|EDP99387.1| peptidyl-prolyl cis-trans isomerase D [Shewanella benthica KT99]
          Length = 621

 Score = 83.2 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/409 (10%), Positives = 102/409 (24%), Gaps = 96/409 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+  +    I       V+  F    + SY   +  +    T+NGE I++  + +  
Sbjct: 1   MLEKIREASQGVIAKSILVLVIFSFAFSGVSSYLGSSTEAA-AATVNGEEISESALEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     +++  ++ L+ E L  Q   + G+      +  
Sbjct: 60  QSERARLEQQLGEMFQALAADDTYLASVKQSVLERLVAEKLLDQSATELGLRVSDQQIKN 119

Query: 105 FFVQ---HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK------ 155
             +       +     + + + L + G   N F+  +        +V +    +      
Sbjct: 120 AIMTEPAFQTDGQFDNDRYLAILRQLGYQANTFRNMMRTDMTRRQLVASLVGSEFVLPGE 179

Query: 156 ---------------------------YGNLEMEIPANKQKMKNITVREYLIRTVLFS-- 186
                                          + +  +         +    +        
Sbjct: 180 ISYLAGIQGQTRDIRYHIVDASPFVADVEVTDEQAQSFFDANLAQFMSPETLSLEYIELN 239

Query: 187 -----------------IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
                              D   Q     +KR+       L   +  +K +  A      
Sbjct: 240 ATDMANDVTVTDAEAQAYYDENKQQYLKAEKRLAAHILINLGDDESASKAKAEAIYAKLQ 299

Query: 230 SI--------------------GKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVE 268
           +                     G+  +  +  +   F ++    S+ + +    T  G  
Sbjct: 300 AGDDFAQLAKTESEDTFSGEQGGQLDWFEQGVMELAFDDVLYSLSKGSYSTVVKTSFGYH 359

Query: 269 YIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN-AIIHY 316
            I + D +      A    +  +      +K   +    L+   A + Y
Sbjct: 360 IIKLLDIQPEV--EAPFVDVKDKIIAQLKDKAAVDTYYGLQQTLADVTY 406



 Score = 38.5 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/261 (11%), Positives = 65/261 (24%), Gaps = 8/261 (3%)

Query: 60  IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
           I LL +Q            ++I +   K  ++       +     + V    +   S   
Sbjct: 361 IKLLDIQPEVEAPFVDVKDKIIAQLKDKAAVDTYYGLQQTLADVTYEVPDTLSEAASELG 420

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
                       N    +     +      N    +  +  +EI AN   +  I      
Sbjct: 421 VEVMTSPVFTRTNAPAPFDNSDVLKAAFSTNVLFDRMNSDVIEIDANHAMVIRIKSHTAA 480

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
                               K+ +  E +R +     +      S    V+        +
Sbjct: 481 G----TVDFTKVKAAIVERLKQEQANEVARDKAQTLMSSFNDAESSTEFVTKTNLGRFEQ 536

Query: 240 SDLHPQFQNLLKKSQNNTTNPYVT---QKGVEYIAICDKRDLGG-EIALKAYLSAQNTPT 295
                      + +Q   +    T     G   I +       G +  L + L  + +  
Sbjct: 537 GIDAAITSKAFQMAQPADSAVVDTVALANGYAVIVLDKVNAAEGIDDNLLSALKQRLSAQ 596

Query: 296 KIEKHEAEYVKKLRSNAIIHY 316
             E      +  L++ A + Y
Sbjct: 597 YSEGDYRAMIAILKAKADVVY 617


>gi|190574687|ref|YP_001972532.1| putative rotamase/peptidyl-prolyl cis-trans isomerase family
           protein [Stenotrophomonas maltophilia K279a]
 gi|190012609|emb|CAQ46237.1| putative rotamase/peptidyl-prolyl cis-trans isomerase family
           protein [Stenotrophomonas maltophilia K279a]
          Length = 299

 Score = 83.2 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/271 (8%), Positives = 75/271 (27%), Gaps = 40/271 (14%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           ++   I++ DI++ +   +      +    A + L+V  L + E ++ G           
Sbjct: 48  VDETAISEADIAREMQHHRA-MRPEQSRAEAARALVVRELLRLEAQRLG----------- 95

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
                                  +      +    + +   ++++    +  + E     
Sbjct: 96  -----------------------LQAPEGNRVSDEEVLIQQLLEDAIKDRVPSDEDCRRY 132

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD--CNKLEKFA 223
            +Q  +     + +    +            F  +   +     L+       +   + +
Sbjct: 133 FEQNPERFRSPDRVRLRHILLAAPADDVAGRFAARTEGERLVGLLKESPHLFADFALRHS 192

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN-PYVTQKGVEYIAICDKRD--LGG 280
                   G   +L      P+F   + + +      P  ++ G   + +  + +     
Sbjct: 193 RCPSSSEGGDLGWLQRGQTTPEFDRQVFRLREGLAGFPVESRWGYHVVCVDAREEGQPQP 252

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             A+   L         ++    Y+ +L+  
Sbjct: 253 FEAVLPQLRDYLELQVRQREVQAYLLQLQER 283


>gi|269216505|ref|ZP_06160359.1| putative peptidylprolyl isomerase PrsA3 [Slackia exigua ATCC
           700122]
 gi|269130034|gb|EEZ61116.1| putative peptidylprolyl isomerase PrsA3 [Slackia exigua ATCC
           700122]
          Length = 424

 Score = 83.2 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/325 (8%), Positives = 84/325 (25%), Gaps = 47/325 (14%)

Query: 29  PIVSYKSWAMSSR---IRTTINGEVITDGDISKRIALLKLQKI----------------- 68
              +  +  +S     +  T+NG  I +  +S  +A  +                     
Sbjct: 34  SGSAGAAPDISDTSGGVAATVNGTDIGENAVSSYVANFRNLNSLNEDTDWAQWMVDNGYT 93

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             +L K  +   + + L +Q  E++ +  D + V+        N     +   +  +   
Sbjct: 94  AEDLRKEVINYYVSQELVRQAAEQNNVKVDEDAVDEQLNTMKMNYDSDGDGSLNADETAS 153

Query: 129 IGDNHFKQYLAIQSIWPDVV---------KNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
                    +A +  +  ++         +   +      + ++    Q           
Sbjct: 154 WNKALQAVGIASEDEYRTLLEMYSLEASLQKAVVPDTAPSDEDMLQYAQMYATAYDGAKK 213

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLL 238
              +LF                 +  ++            +++++        G   + +
Sbjct: 214 SSHILF--------ASDDQATAQEVLDKINSGELDFAEAAKQYSTDTASAADGGNVGWDV 265

Query: 239 ESDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY--------LS 289
            +    ++ + L    +   +    ++ G+  I          E+             + 
Sbjct: 266 LNSFVKEYTDALSGLGEGEVSGLVTSEYGIHIIKCTQVFKTPEEVTSVDQIPSEWLDSIK 325

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAII 314
           A             + K    +A I
Sbjct: 326 ASLQQANKTSAYKAWFKDFYDSADI 350


>gi|308182349|ref|YP_003926476.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori PeCan4]
 gi|308064534|gb|ADO06426.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori PeCan4]
          Length = 299

 Score = 83.2 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 81/281 (28%), Gaps = 29/281 (10%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            S+ +  T++G  IT  D    I          +L++   + LI + ++   +E    T 
Sbjct: 40  SSAGVLATVDGRPITKSDFD-MIKQRNPNFDFDKLKEKEKEALIDQAIRTALVENEAKT- 97

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                             + E  +     +      F              + + + K  
Sbjct: 98  -------------ERLDSTPEFKAMMEAVKKQALVEFWAKK----------QAEEVKKIQ 134

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E E+       K+    +         +       +   +   +   +   +  +  N
Sbjct: 135 IPEKEMQDFYDANKDQLFVKQEAHARHILVKTEDEAKRIISEIDKQPKTKKEAKFIELAN 194

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDK 275
           +     +  +  + G      ++ + P F +     +  N T  P  T+ G   I +  K
Sbjct: 195 RDTIDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGNYTKTPVKTEFGYHIIYLISK 254

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                      K  +         ++   + +++LR +A I
Sbjct: 255 DSPVTYTYDQAKPTIKGMLQERLFQERMNQRIEELRKHAKI 295


>gi|42521667|ref|NP_967047.1| parvulin-like peptidyl-prolyl isomerase [Bdellovibrio bacteriovorus
           HD100]
 gi|39574197|emb|CAE77701.1| Parvulin-like peptidyl-prolyl isomerase [Bdellovibrio bacteriovorus
           HD100]
          Length = 322

 Score = 83.2 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/308 (12%), Positives = 96/308 (31%), Gaps = 27/308 (8%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIAL---------LKLQ 66
           LT  F+ +   +    S     +S++    +N  V+T    + ++A           K  
Sbjct: 9   LTGLFIFMSLALAGCPS-SYQKLSTKPVEKVNDHVLTSKQFANQLARRLRNFDALAAKDP 67

Query: 67  KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
                +++  +++ +V++L         I    NT++    +   N       F   L  
Sbjct: 68  NNIHRIKEEILRDFLVKSLTLDWARAQSIVISENTLDKEVDKLRANYPDDL-SFRRALAL 126

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
           + +  + +++ L    +  +V K          E EI    +  K+   R+  +      
Sbjct: 127 ENLSFSEWREELRYSLVEREVFKKINEKVKAPTEEEIKRYYEDNKDRYKRKERVFLRQIV 186

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
           + ++   +   V           L+         K++        G   ++ +  +    
Sbjct: 187 VDEDAKADAIKVD----------LKTGDFAELARKYSITPEAKQGGVVGWIEKGTVD--- 233

Query: 247 QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEY 304
                 +  +      +  G+  I +  K          +K  +       + +     +
Sbjct: 234 YFDPLFNVGSGVQTIKSPFGIHLIRVEKKAPASTLSLEEVKPQIIRALRAQREQAEYVAW 293

Query: 305 VK-KLRSN 311
           +  +LRS+
Sbjct: 294 LDAQLRSS 301


>gi|220934121|ref|YP_002513020.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995431|gb|ACL72033.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 633

 Score = 83.2 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/407 (11%), Positives = 102/407 (25%), Gaps = 101/407 (24%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+    + +I  +    + I F +  +  Y   A +  +   +NG  I      +  
Sbjct: 1   MLQKIRDKATGWIAYVIVILISIPFALWGLNEYFGGAPAQ-VVAEVNGVEIPARAYQQEF 59

Query: 61  ALLKLQK-------------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF- 106
              + Q                  + + A+Q LI   L  Q  E  G    ++ V     
Sbjct: 60  QQQRQQLAQMFGGRIPSGAVDENMMRENALQTLIRRELVAQMAEDKGFRISASAVASEIR 119

Query: 107 --VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK--------------- 149
                 R+     E +   ++ Q      F+  +A   +                     
Sbjct: 120 AVPGFQRDGVFDPERYRQIMESQRRSPAEFEARVAQAMLLEQFQSGYQRSAFLPEAMVED 179

Query: 150 ------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRT--------- 182
                               +  +    E +I A   +          +R          
Sbjct: 180 FVRLRHERRQVSVHRFPAEAYAERVQVSEDDIAAFYAEHGEQFQTPERLRLAYLLLDDAT 239

Query: 183 ---VLFSIPDNKLQNQGFVQKRIKDAEESRLR---------------------------L 212
               +    D+  +       R    EE R                              
Sbjct: 240 LAEQVSVTEDDLRREYEQRSDRFTQPEERRASHILIRVEPGADADTVAAAEARAREARAR 299

Query: 213 PKDCNKLEKFASKIHDV-----SIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKG 266
            +      + A  + D      + G   Y+   D+ P  + +       + + P  T  G
Sbjct: 300 IEAGEDFAEVARAVSDDPMAETAGGDLGYIARGDIDPTLEGVLFTMRVGDVSQPVRTGLG 359

Query: 267 VEYIAICDKRDL--GGEIALKAYLSAQNTPTKIE----KHEAEYVKK 307
           ++ + + D          A++  + A+    ++E    +     + +
Sbjct: 360 LQIVRLTDIEAARREPFEAVRDEVEAEFRSRRVEGLHIELTERLLTE 406


>gi|308183972|ref|YP_003928105.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
           SJM180]
 gi|308059892|gb|ADO01788.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
           SJM180]
          Length = 299

 Score = 83.2 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 81/281 (28%), Gaps = 29/281 (10%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            S+ +  T++G  IT  D    I          +L++   + LI + ++   +E      
Sbjct: 40  SSAGVLATVDGRPITKSDFD-MIKQRNPNFDFDKLKEKEKEALIEQAIRTALVENEA--- 95

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                       A     + E  +     +      F              + + + K  
Sbjct: 96  -----------KAEKLNQTPEFKAMMEAVKKQALVEFWAKK----------QAEEVKKVQ 134

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E E+       K+    +         +       +   +   +   +   +  +  N
Sbjct: 135 IPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELAN 194

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDK 275
           +     +  +  + G      ++ + P F +     +  + T  P  T+ G   I +  K
Sbjct: 195 RDTIDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGDYTKTPVKTEFGYHIIYLISK 254

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                      K  +         ++   + +++LR +A I
Sbjct: 255 DSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEELRKHAKI 295


>gi|291297351|ref|YP_003508749.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus ruber
           DSM 1279]
 gi|290472310|gb|ADD29729.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus ruber
           DSM 1279]
          Length = 620

 Score = 83.2 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/332 (11%), Positives = 96/332 (28%), Gaps = 32/332 (9%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSS---RIRTTINGEVITDGDISKRIAL 62
              ++  +  +    + + F +  ++ +      S   +   T+NG  + + D+++    
Sbjct: 1   MFGINRRVVAVIFGVLALAFVVGSVLLFTPQGQRSTQGKTEFTVNGRPVYELDLARAQQS 60

Query: 63  LKLQ--KINGELEKIA----VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
             +      G L+ +A    V  +IV T   Q+  +      S  +           GL 
Sbjct: 61  DPILSTNPQGLLKNLAEVNFVDRMIVTTALLQDTARVR--VSSGELKKELDTIKERFGLQ 118

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            ++       Q    +   +      I  +    +   K    E E+    +  ++    
Sbjct: 119 KKEDYDRFLTQVGYTDSQLRNELRDQIRINKRVEEIQKKAEPTEEEMRLYFELNRDQYKN 178

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
           E  ++     + D    ++ + +               D   + K  SK++    G    
Sbjct: 179 EERVQARQIVVDDKTTADKIYAE---------VTAPGADFAAIAKANSKLNAEQGGALGA 229

Query: 237 LLESDLHPQFQNLLKKS----------QNNTTNPYVTQKGVEYIAICDKRDLGG--EIAL 284
                       ++  +              + P         + +      G      +
Sbjct: 230 QAGQSEPGPVTRVVFPNAVAEAVFKLRDGQISKPIEAGGRFYIVKVEKYLPAGDVKFEEV 289

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           K  +       K +     Y+++LR+ A + +
Sbjct: 290 KDRVKEDAKRIKGQGALEAYIEELRAKANVKF 321



 Score = 65.9 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 20/298 (6%), Positives = 72/298 (24%), Gaps = 53/298 (17%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
                ++   + +   +    I   ++++    +       +L +  + EL V+      
Sbjct: 321 FAEGSTYKFENPVVAKVGDTEIKLTEVTQ---SVFANPQVPQLLQQGLGELAVQFFM--- 374

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
                      T+     + A            F  K  +     +              
Sbjct: 375 ---------PQTLEQLISREAAYQFAQTLGQPFFGSKSDVVAQAQQWKTRD--------- 416

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
                     E E+                 +    +            + +      + 
Sbjct: 417 ------ITVTEAEVRRYYDANLANFTIPASAKVQAVNFK-------KEDKAKADAFRAAA 463

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN--------LLKKSQNNTTNPY 261
           L+  K  +  +      ++ ++     +    + P              K      +   
Sbjct: 464 LKGGKLEDLAKA-----NNGTVQDYGVVNPGTMPPVPNRLVFLTRGTFPKGPLGEVSEVV 518

Query: 262 VTQKG-VEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             + G  + + + D++         ++     Q   ++  +   ++++++R  A +  
Sbjct: 519 KLEDGSFQVLIVNDRKAEVLRPFEEVREEARQQVLASRRAEAAQKWLEEVRKAAKVEN 576


>gi|254479750|ref|ZP_05093031.1| PPIC-type PPIASE domain protein [Carboxydibrachium pacificum DSM
           12653]
 gi|214034310|gb|EEB75103.1| PPIC-type PPIASE domain protein [Carboxydibrachium pacificum DSM
           12653]
          Length = 271

 Score = 83.2 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/274 (10%), Positives = 81/274 (29%), Gaps = 16/274 (5%)

Query: 47  NGEVITDGDISKRIALLKLQKINGELE-KIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           NGE IT+ +  +    +K Q  +     K    +          ++++ +          
Sbjct: 2   NGEKITNAEYQQIFEQVKEQIESAPTYTKDIWNQDYQGKKFLDFVKENVLDSLVAQKLLV 61

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
                +N  ++ ++     +K+   ++   +    + +  D +  ++       + E+  
Sbjct: 62  QEAKKKNITVTDKEVEEEYNKEKQFNSKVTKEQIREYLLIDKLLAEYTKDVKVTDEELKK 121

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-S 224
              + K           ++              +K  +D  +  ++        ++++  
Sbjct: 122 YYDEHKESFEVMRARHILV------------ADEKTAEDIYQRLMKGEDFAALAKEYSID 169

Query: 225 KIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIA 283
                + G         + P+F+           + P  TQ G   I       +     
Sbjct: 170 TATKDNGGDLGEFPHGVMVPEFEEAAFSLKLGEISKPVKTQYGYHIIKSEGI-TVKPFDE 228

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           +K  + +     K  K   E   +L   + I  +
Sbjct: 229 VKGTIESYLLNDKKNKVIKEKYDELVKASKIQKF 262


>gi|300704055|ref|YP_003745657.1| peptidylprolyl isomerase; exported protein [Ralstonia solanacearum
           CFBP2957]
 gi|299071718|emb|CBJ43042.1| Putative Peptidylprolyl isomerase; exported protein [Ralstonia
           solanacearum CFBP2957]
          Length = 265

 Score = 83.2 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 64/280 (22%), Gaps = 48/280 (17%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              +NG  I    +   I     Q    EL   A   L+   L +Q+  K G        
Sbjct: 27  AAVVNGHAIPSAKVDALIKK-SGQPDTPELRNRARDMLVDRELIEQDAAKRG-------- 77

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                     +      Q    Q+    +V  +F     N    
Sbjct: 78  --------------------------LLGRDDVQEQLAQARLNVLVAAEFEDYVKNSPTT 111

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                ++ + I  +    +           +                          +  
Sbjct: 112 EDELHKQYEKIKAQFGNGKEYHAHHILVDKEADAKA------IIAKLKAGGNFEEIAKAQ 165

Query: 223 ASK-IHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTT-NPYVTQKGVEYIAICDKRDL- 278
           +       + G   +       P+F   L    +   T  P  TQ G   I + D RD  
Sbjct: 166 SKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGEITLTPVKTQFGWHVIRLDDTRDAK 225

Query: 279 -GGEIALKAYLSAQNTPTK--IEKHEAEYVKKLRSNAIIH 315
                 +K  L       +          +K LR  A + 
Sbjct: 226 IPAFEDVKPQLLEMMMGDQNWQRAKFQAMLKDLREKATVK 265


>gi|260596813|ref|YP_003209384.1| periplasmic folding chaperone [Cronobacter turicensis z3032]
 gi|260215990|emb|CBA28646.1| Peptidyl-prolyl cis-trans isomerase D [Cronobacter turicensis
           z3032]
          Length = 645

 Score = 83.2 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/397 (10%), Positives = 99/397 (24%), Gaps = 85/397 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + +  +  +    +++ F +  + +Y     S+     +N + I+   +   +
Sbjct: 21  MMDNLRAAANHVVLKIILGLIILSFILTGVSNYLIGGNSNY-AAKVNDQEISRAQLENAV 79

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
            + +                      EL + A+Q LI E L  Q      +      V  
Sbjct: 80  NIERNNLERRMGDRFSELASNEQYMAELRQRALQGLIDEALIDQYARSLHLEISDEQVRQ 139

Query: 105 FFVQ---HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML------- 154
              +      +       +++ +   G+  + + Q L  Q     +V             
Sbjct: 140 SIFKNPAFQSDGKFDNARYNAIITSMGMSADQYAQALRNQLTTDQLVSAVMGSDFILPGE 199

Query: 155 --------------------------KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                     K    E EI    Q+  N        R     + 
Sbjct: 200 SDQFAALFAQQRQARTATIVVDALAEKQQVSEQEIKDYYQQHANNFQSPEQFRVSYIKLD 259

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              L       +     ++                                +        
Sbjct: 260 AAALAENASEDEIQAYYDKHQDEFGQPERNRYSLIQTKTEAEAKAILAQLKQGADFATLA 319

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ +   I   + G   +L       +F+N   K +   ++   +  G   + + D    
Sbjct: 320 KEKSVDVITARNGGDMGWLEPGTTPDEFKNAGLKDKGQLSDVIKSSVGFLIVRLDDTTPA 379

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             +    +   +SA+    K         +K+   A 
Sbjct: 380 KVKPLSEVHDDISAKVKQEKALDAFFALQRKVSDAAN 416



 Score = 36.6 bits (82), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 19/52 (36%)

Query: 264 QKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           Q  V  +A+ D R      A K  +  +      E      +K LR +A I 
Sbjct: 584 QGNVVLLALDDVRSGTMPDAQKKAMGQRLIQNNAEIAFDALLKGLRKDAKIK 635


>gi|168700601|ref|ZP_02732878.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gemmata
           obscuriglobus UQM 2246]
          Length = 367

 Score = 83.2 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/299 (10%), Positives = 76/299 (25%), Gaps = 33/299 (11%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              +NG+ I +  + + +     Q       K  +  LI   L  + +     T D   V
Sbjct: 70  AAVVNGKPIPEVAVYRALRQFPEQHR-DMARKEIMAHLIENALIDEYLTALKTTVDEKDV 128

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                   +    + +D++  L+   + +  F+  +  Q  W   V+       G     
Sbjct: 129 EKLIADLKKELTEAKKDYAKELEAMMLTEAEFRSEVTAQMKWEKFVQQQ-----GTDAAL 183

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL---------- 212
               +             R +L +   ++ + +   QK     +                
Sbjct: 184 KQLFESSPDVFDGTMVRARHILMTPGTDEAKRKDADQKLRGIKQAVEQEAAKAVAALPAT 243

Query: 213 ---------------PKDCNKLEKFASKIHDVSIGKAQYLLE-SDLHPQF-QNLLKKSQN 255
                                 + +++       G   +      +   F +        
Sbjct: 244 ADAVAKEQARVSKTDEMFAAYAKGYSTCPSKKDGGDLNFFPRAGAMVEPFAKAAFALKPY 303

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             ++   T+ G   I +  +R    +      +          +     +  ++  A I
Sbjct: 304 QMSDVVATEFGYHLILVTQRRQGTPKKFEDKGVKEDVQMLYAMRLRESVIAMMKPKAQI 362


>gi|302878839|ref|YP_003847403.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gallionella
           capsiferriformans ES-2]
 gi|302581628|gb|ADL55639.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gallionella
           capsiferriformans ES-2]
          Length = 631

 Score = 83.2 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/404 (8%), Positives = 92/404 (22%), Gaps = 100/404 (24%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   V      F++++    +++ F    + SY+    +     T+NGE IT  +    +
Sbjct: 1   MFDFVHEK-RRFVQIV-LLLIILPFAFFGVDSYRHSGDTDAP-ATVNGEKITKQEFDTAM 57

Query: 61  -------------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF-- 105
                                  E+++  +  L+ + L  +  + +G+T     +     
Sbjct: 58  RQQQDKMRQVLGENFDPALFEKAEMKRAILDNLVAQRLLLERAKAAGLTVTDEQIAQVIG 117

Query: 106 -FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV----------------- 147
                          ++S L  Q +    F+  +  +     +                 
Sbjct: 118 GIDAFKDGGKFDKARYTSALAAQNMTPAIFEARVKDELTGQQMRDAYTQNGYVSNAVADN 177

Query: 148 ----------------VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                           +   FM +    +  I       +        ++          
Sbjct: 178 IIAINEQQRIVSIAPILSRSFMAQAKVDDAAIKTYFDANQKEFQVPEQVKVEYVKFSIAD 237

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA---------------------------- 223
           L  +  ++           +      +  + +                            
Sbjct: 238 LIAKADIKAEEVRQYYDEHQSEFASAEQRQASHILLVVAATAPQAEQDAVKAKAEKLLAQ 297

Query: 224 -----------------SKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQK 265
                                 V+ G         +   F + +        +    +  
Sbjct: 298 VKQEPGKFADLARQNSQDPGSAVNGGDLGMFGRGMMVKPFDEAVFSLKAGEISGLVKSDF 357

Query: 266 GVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
           G   I +   +         ++A ++ +    K     AE   K
Sbjct: 358 GYHIIKLTAIKASRATPFNEVQAEIAGKLRQQKAADSFAELADK 401


>gi|119471187|ref|ZP_01613719.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
           [Alteromonadales bacterium TW-7]
 gi|119445843|gb|EAW27125.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
           [Alteromonadales bacterium TW-7]
          Length = 633

 Score = 83.2 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/398 (10%), Positives = 102/398 (25%), Gaps = 96/398 (24%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+       +  +    V++ F +  I SY            +NG  I+  + ++  
Sbjct: 1   MLEKIREGSQGPVAKIILGAVILSFALAGIGSYLGQTTEQP-VAEVNGVKISQTEFNRAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                    ++ +  +  L+ + L+ Q   + G+    +TV  
Sbjct: 60  QNERNRLEQQFGEYFTQIAADPNYMAQIRQGVIDRLVQQELQSQLAAELGLRVSDDTVRK 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
             ++          + + +   + +     + F++YL        +V             
Sbjct: 120 TILELPYFQLGDKFNNDRYLQVIRQMNFQPDTFREYLREDMTRSQLVSAVAGTDFALESE 179

Query: 149 --------------------KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS-- 186
                               K          E E+        +  +   LI        
Sbjct: 180 LKSAIALQQQTRSIDYLVINKESLADNVEVSEQEVSDYYDLNASQFLSPELISVNYVELK 239

Query: 187 ----------------IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA------- 223
                             +         +KR             D  K +  A       
Sbjct: 240 AENIVVGSVTEEDVKASYEQNKAQYVEPEKRRVSHILIDNSEDDDAAKAKVDALYAELQQ 299

Query: 224 -------------SKIHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVE 268
                          +     G   ++    + P F++     +++ + +    ++ G  
Sbjct: 300 GADFAELAESSSDDIVSAEMGGDLDWIERDVMDPAFEDAAFSLEAKGDFSEVVASEFGYH 359

Query: 269 YIAICDKRD--LGGEIALKAYLSAQN-TPTKIEKHEAE 303
            I + D +   +     +KA L A+     KI+    +
Sbjct: 360 IIKLTDIQPQQVKPFDDVKADLRAELERAEKIDAFYDK 397


>gi|188526979|ref|YP_001909666.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
           Shi470]
 gi|188143219|gb|ACD47636.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
           Shi470]
          Length = 299

 Score = 83.2 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 80/281 (28%), Gaps = 29/281 (10%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            S+ +  T++G  IT  D    I          +L++   + LI + ++   +E    T 
Sbjct: 40  SSAGVLATVDGRPITKSDFD-MIKQRNPNFDFDKLKEKEKEALIEQAIRTALVENEAKT- 97

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                             + E  +     +      F              + + + K  
Sbjct: 98  -------------EKLNQTPEFKAMMEAVKKQALVEFWAKK----------QAEEVKKIQ 134

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E E+       K+    +         +       +   +   +   +   +  +  N
Sbjct: 135 IPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELAN 194

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDK 275
           +     +  +  + G      ++ + P F +     +  + T  P  T+ G   I +  K
Sbjct: 195 RDTIDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGDYTKTPVKTEFGYHIIYLISK 254

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                      K  +         ++   + +++LR  A I
Sbjct: 255 DSPVTYTYDQAKPTIKGMLQEKLFQERMNQRIEELRKRAKI 295


>gi|317008847|gb|ADU79427.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori India7]
          Length = 299

 Score = 83.2 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/281 (11%), Positives = 77/281 (27%), Gaps = 29/281 (10%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            S+ +  T++G  IT  D    I          +L++   + LI + +            
Sbjct: 40  SSAGVLATVDGRPITKSDFD-MIKQRNPNFDFDKLKEKEKEALIDQAI-------RTALV 91

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
           ++               +        L +                      + + + K  
Sbjct: 92  ENEAKTEKLDSTPEFKAMMEAVKKQALVEFWAKK-----------------QAEEVKKVQ 134

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E E+       K+    +         +       +   +   +   +   +  +  N
Sbjct: 135 IPEKEMQDFYDANKDQLFVKQEAHARHILVKTEDEAKRIISEIDKQPKTKKEAKFIELAN 194

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDK 275
           +     +  +  + G      ++ + P F +     +  N T  P  T+ G   I +  K
Sbjct: 195 RDTIDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGNYTKTPVKTEFGYHIIYLISK 254

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                      K  +         ++   + +++LR +A I
Sbjct: 255 DSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEELRKHAKI 295


>gi|302344093|ref|YP_003808622.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfarculus
           baarsii DSM 2075]
 gi|301640706|gb|ADK86028.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfarculus
           baarsii DSM 2075]
          Length = 649

 Score = 83.2 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 45/162 (27%), Gaps = 5/162 (3%)

Query: 152 FMLKYGNLEMEI--PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
           F  K    E EI         +     E   R +L  +     + Q    K    A   +
Sbjct: 239 FRDKADVAEDEIIDAYEMDWRQYSRPEEVRARHILIELAPEADEAQKAKAKAQALALLEK 298

Query: 210 LR-LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVE 268
            R         ++++        G   Y     +   F  L+ K          T+ G  
Sbjct: 299 ARAGEDFAKMAKEYSKGPSADKGGDLGYFQRGQMVGPFDELVFKMTPGQIEVVETEFGWH 358

Query: 269 YIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
            + + DK+          +  + A+    + +    +  + L
Sbjct: 359 VVKLEDKKKARIVPLEEARGEIKARLAEQQAKDLAMQAAEGL 400



 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/284 (10%), Positives = 84/284 (29%), Gaps = 20/284 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +     ++I  +    + + F +       ++  +  +   +N + I +  +S+  
Sbjct: 1   MLELMRRQAGNWIIKIILGLIALAFAL-SFGLSPNFGSNPGVAMKVNDQPIMEDAVSELY 59

Query: 61  ALLKLQKING------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
             +  Q                 L + A+  L+   L  Q  ++ G+   +  +      
Sbjct: 60  GRMTEQARQQFGDNFDKLAPMLNLRQQALYSLMDRLLLAQAAQRMGLGVSNRELASSIQD 119

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
            A        D   +  +Q +  N   +     S+  D+++       G    ++   + 
Sbjct: 120 MAAFQVEGKFDMRLY--QQRLAANRLTEERFENSVRADLLQGKIAAMVGGS-GQVTPLQV 176

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
                          L   P++ L +    +  I +  ES   L  +   L      +  
Sbjct: 177 DQALQEALSRADAVYLLVKPEDLLDSVKVGEDEIAEHYESHKGLYMNPATLRVDYVALPV 236

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAI 272
            +      + E ++   ++   +      + P   +     I +
Sbjct: 237 SAFRDKADVAEDEIIDAYEMDWR----QYSRPEEVRARHILIEL 276



 Score = 42.0 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 40/127 (31%), Gaps = 11/127 (8%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL------HPQFQNLLKK 252
           +K  + A+     +    N  +  A+ +  +       L  S+         Q Q  +  
Sbjct: 494 EKANQLAQVQAKEIIAKLNAAKDPAAALSKLGGKPTGPLTSSEPIEGLPGSEQLQQAIHA 553

Query: 253 SQNNTT---NPYVTQKGVEYIAICDKRDLGG--EIALKAYLSAQNTPTKIEKHEAEYVKK 307
              + T    P     G     +  ++         ++  ++ Q   T   +    ++  
Sbjct: 554 LAQDKTVLAQPVPVAGGFAVAVVTKRQPPEPGAMDQMREGMTQQLRRTMQNQTYQRFLAD 613

Query: 308 LRSNAII 314
           LR+NA I
Sbjct: 614 LRNNADI 620


>gi|260886177|ref|ZP_05736674.2| putative peptidyl-prolyl cis-trans isomerase [Prevotella tannerae
           ATCC 51259]
 gi|260850470|gb|EEX70339.1| putative peptidyl-prolyl cis-trans isomerase [Prevotella tannerae
           ATCC 51259]
          Length = 487

 Score = 83.2 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/305 (10%), Positives = 84/305 (27%), Gaps = 38/305 (12%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M    +  L      L+   +L+    + I   ++ + +  +  TING  I   +     
Sbjct: 1   MLKSPYMKLK-----LSFGLILLSLFAINIEQLQAQSANDPVIMTINGRPILRSEF--EY 53

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
           +  K  K    +EK +V E     L  +    +      +T   F  +      L    F
Sbjct: 54  SYNKNGKEAAVVEKKSVDEYAEMFLNYKLKVAAAERARIDTTKAFKDEFRTYRDLQLTPF 113

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
                            +  +    D+++                               
Sbjct: 114 MVDQAFIDSTAIALYDNMKTRLGGKDLLR-----------------------------PA 144

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
             +     +     +   + R     +  +         ++++  +   +  G+  ++  
Sbjct: 145 HILFSVKQNATAAEKETAKMRADSVYQVIMNGGNFAALAKEYSGDLGSALRGGEISWIGP 204

Query: 240 SDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE 298
                +F+    K      + P +T  G   I + +++ L     L+  +        ++
Sbjct: 205 GATVKEFEEAAYKLKVGEVSQPVLTPFGYHIIKMQERKQLEPYAELRDQILYSLKQQGVD 264

Query: 299 KHEAE 303
           +  A 
Sbjct: 265 EISAN 269


>gi|121591803|ref|ZP_01678995.1| survival protein SurA [Vibrio cholerae 2740-80]
 gi|121546332|gb|EAX56604.1| survival protein SurA [Vibrio cholerae 2740-80]
          Length = 244

 Score = 83.2 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 51/141 (36%), Gaps = 4/141 (2%)

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQY 236
              R +L              ++  +  +  +          ++++         G+  Y
Sbjct: 96  VNARHILIKPTIILSDEGAQ-KQLNEFVQRIKNGEVTFAELAQQYSQDPGSAAQKGELGY 154

Query: 237 LLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKAYLSAQNTP 294
                  P+F++ ++       + P+ T  G   + + D+R++   + ALK         
Sbjct: 155 QTPDLYVPEFKHQIETLPVGQISEPFKTVHGWHIVEVLDRREVDRTDSALKNKAYRILFN 214

Query: 295 TKIEKHEAEYVKKLRSNAIIH 315
            K  +  + ++++LR++A + 
Sbjct: 215 RKFNEEASAWLQELRASAFVE 235



 Score = 67.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 8/125 (6%), Positives = 37/125 (29%), Gaps = 4/125 (3%)

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LK 251
           Q++   +                      ++     +  G   ++ + ++   F +    
Sbjct: 2   QDKSTAETLANKLVNDLRNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMPTIFADQIKM 61

Query: 252 KSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
           +++ +   P+ +  G   + I D +    +        ++  + T    ++   + + + 
Sbjct: 62  QNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTIILSDEGAQKQLNEF 121

Query: 309 RSNAI 313
                
Sbjct: 122 VQRIK 126


>gi|228906899|ref|ZP_04070766.1| Foldase protein prsA 2 [Bacillus thuringiensis IBL 200]
 gi|228852647|gb|EEM97434.1| Foldase protein prsA 2 [Bacillus thuringiensis IBL 200]
          Length = 285

 Score = 83.2 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/304 (9%), Positives = 77/304 (25%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + ++S       S    T     +T  D  K++             K  
Sbjct: 4   KHIFIITALISILMLSACGQKNGSATVATATDSTVTKDDFEKQLK--------DRYGKDM 55

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           + E++ + +  ++ +      +                +  +    F           ++
Sbjct: 56  LYEMMAQDVITKKYKVPDEEVNKEVE-----------KVKKQYGDQFKKVLENNRLKDEE 104

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 105 DFKNQIKFKLAMNEAIKKSITEKDVKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ +             ++ +  +      G   Y     + P+F+    K + 
Sbjct: 145 SDENEAKEIKNKLDAGASFEELAKQESQDLLSKDKGGDLGYFNSGTMAPEFETAAYKLNV 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              +NP  +  G   I + DK+DL     +K  +       +        + +++    A
Sbjct: 205 GQISNPVKSSNGYHVIKLTDKKDLKPYDEIKNSIRKNLEEERTADPVFSKKLLQEELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|78188012|ref|YP_378350.1| peptidyl-prolyl cis-trans isomerase SurA [Chlorobium
           chlorochromatii CaD3]
 gi|78170211|gb|ABB27307.1| peptidyl-prolyl cis-trans isomerase SurA [Chlorobium
           chlorochromatii CaD3]
          Length = 438

 Score = 83.2 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/273 (10%), Positives = 87/273 (31%), Gaps = 11/273 (4%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI----NGE 71
           L    +     +V         +  R+   +  + I   DI++R A+L+ Q         
Sbjct: 6   LKHIVLAGTLLLVAAPHVLRSEVVDRVVAVVGNDAIFQSDINRRAAMLRAQYPDLAKEQS 65

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           + +  +Q ++ + L   +     +T +S  V+   ++  R          +   + G+  
Sbjct: 66  VPRNILQGMVEQKLLVTKARLDSVTVESAQVDATTLERLRQIVARFPTKQAMERQLGMTL 125

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLK-----YGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
              ++ +  +     +       K         E+       + +     E +  + +  
Sbjct: 126 PALRESIREELTNQQLADKLRRKKTALASVTYDEVMAFYRDNRGQIAPADEQVSVSQIIK 185

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQ 245
                 +++      ++  ++             K++       S G   ++ +  L  +
Sbjct: 186 YAAVTPESRKEAAAVMQSIQQELQAGADFGELARKYSQDPGSATSGGDLGFVRKGQLVAR 245

Query: 246 FQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD 277
           F+ +     +   +    T+ G+  I + ++ D
Sbjct: 246 FEQVAFALKEGEVSEVVETRYGLHLIQMLNRDD 278


>gi|239947926|ref|ZP_04699679.1| ppic-type ppiase domain protein [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922202|gb|EER22226.1| ppic-type ppiase domain protein [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 270

 Score = 83.2 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/292 (11%), Positives = 76/292 (26%), Gaps = 38/292 (13%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
           ++S  ++A   ++  T  G  + +  I K        +    ++                
Sbjct: 1   MLSGIAFANKDKVVATYKGGEVKESQIMKEFKPQLNLQSGETIKN--------------- 45

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
                            ++   N  L  E+ +              +    Q    +++ 
Sbjct: 46  -----FDDFPPQDQEKLIKIYVNNLLLKEEVTKSNITSSKEFQEKLKNAKNQLAQQELLA 100

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
           N       +   +    K         +  +  +L              QK   D +   
Sbjct: 101 NYIKSNITDKMFDDEYTKYVSNLKGKEQIKVAHIL-----------VKSQKEANDIKTKL 149

Query: 210 LRLPKDCNKLEKFA-SKIHDVSIGKAQYL---LESDLHPQFQNLLKK-SQNNTTNPYVTQ 264
            +        E+ +  K    + G   Y+       L P+F+        N  + P  T 
Sbjct: 150 SKGGNFTKLAEESSLDKASASNGGVIGYILLNQPGQLVPEFEKKAFALKVNEVSTPVKTD 209

Query: 265 KGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            G   I + +K+ +   I  K             +   +Y+  L + A +  
Sbjct: 210 FGWHIIKVLEKKPVP--IPTKEEAKITIDNILAAEVLKKYISDLEAKADLKI 259


>gi|317179430|dbj|BAJ57218.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
           F30]
          Length = 299

 Score = 82.8 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 81/281 (28%), Gaps = 29/281 (10%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            S+ +  T++G  IT  D    I          +L++   + LI + ++   +E    T 
Sbjct: 40  SSAGVLATVDGRPITKSDFD-MIKQRNPNFDFDKLKEKEKEALIDQAIRTALVENEAKT- 97

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                             + E  +     +      F              + + + K  
Sbjct: 98  -------------ERLDSTPEFKAMMEAVKKQALVEFWAKK----------QAEEVKKIQ 134

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E E+       K+    +         +       +   +   +   +   +  +  N
Sbjct: 135 IPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELAN 194

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDK 275
           +     +  +  + G      ++ + P F +     +  + T  P  T+ G   I +  K
Sbjct: 195 RDTIDPNSKNAQNGGDLGKFQKNQMTPDFSKAAFALTPGDYTKTPVKTEFGYHIIYLISK 254

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                      K  +         ++   + +++LR +A I
Sbjct: 255 DSPVTYTYDQAKPTIKGMLQEKLFQERMNQRIEELRKHAKI 295


>gi|288803874|ref|ZP_06409299.1| peptidyl-prolyl cis-trans isomerase, PPIC [Prevotella
           melaninogenica D18]
 gi|288333639|gb|EFC72089.1| peptidyl-prolyl cis-trans isomerase, PPIC [Prevotella
           melaninogenica D18]
          Length = 459

 Score = 82.8 bits (202), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/271 (10%), Positives = 74/271 (27%), Gaps = 17/271 (6%)

Query: 35  SWAMSSRIRTTINGEVITDGDIS-KRIALLKLQKI-NGELEKIAVQELIVETLKKQEIEK 92
             ++   +   +  E I   ++   R+         NG+ E I  +++ V+ L   +   
Sbjct: 28  PNSVVDEVIWVVGDEPILKSEVEIMRLQSEAEGTKWNGDPECILPEQIAVQKLFLHQAAL 87

Query: 93  SGITFDSNTVNYFFVQHARNTGL-----SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
             +    + +                  S E   +F +K                +    
Sbjct: 88  DSVEVSESEIARGIDDQINYWISLPQIGSKEKLEAFQNKSMTQIRQDLHDDYKNRLLVQK 147

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           V+ + +        E+    +K+   ++        +  +          + +      +
Sbjct: 148 VQQNLVNDVAVSPAEVREYFKKLPVDSIPMIPTTVEVEILTQTPKIETEEINRIKNQLRD 207

Query: 208 SRLRLPKDCNKLEKFASKIH-----DVSIGKAQYLLESDLHPQFQNLLKKSQN--NTTNP 260
              R+ K        A             G+  Y+    L P F        +    +  
Sbjct: 208 YTDRVTKGETSFATLARLYSEDPGSARQGGELGYMGRGVLDPAFAAAAFNLTDPKKISKV 267

Query: 261 YVTQKGVEYIAICDKRDLGGEIALKAYLSAQ 291
             ++ G   I + D+R   G+     ++  +
Sbjct: 268 VESEFGYHIIQLIDRR---GDKVNVRHILLK 295


>gi|332968862|gb|EGK07909.1| hypothetical protein HMPREF0476_1616 [Kingella kingae ATCC 23330]
          Length = 318

 Score = 82.8 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/317 (9%), Positives = 94/317 (29%), Gaps = 14/317 (4%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ-----KI 68
            + T    +++   +           + +   +N  +IT GD+S+ +  LK +       
Sbjct: 3   NIRTLAAAIMLGLGIQAACAADIKPLNSVLMEVNSSIITYGDVSRTVRELKSRPTNKDIP 62

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             +L + A  +L+  +L      +  +      ++    + A     +     +     G
Sbjct: 63  EAQLVQAAKMQLVERSLLADAARQQQLRVPEAGIDEELQRRAAQDKTTVAALYAKAASVG 122

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV------REYLIRT 182
                ++  +A   +   ++ N         E +I       +             +   
Sbjct: 123 YTKESYRLEVAKDLLIAHMLSN-LNSDINITEAQIQEYAVNAQKTGQALPAAEPYTVYTI 181

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
               +      +   V  RI+    +  +     +   +++ +    + G    + +  L
Sbjct: 182 RRILLRATSQADVPAVGNRIQQIATAIAQGTDFASIARRYSQEAQAANGGLHDNITDYML 241

Query: 243 HPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR-DLGGEIALKAYLSAQNTPTKIEKH 300
               +           + P       + I +   R +          +         +++
Sbjct: 242 PENVEPFLHTLKVGEVSAPRNAGTTWQMIELVGSRTETDPYKMQAEAIRRLLVRQAQQRN 301

Query: 301 EAEYVKKLRSNAIIHYY 317
           +  ++ +L+ +A++  Y
Sbjct: 302 QEAFIGQLQQSAVVREY 318


>gi|152986261|ref|YP_001348850.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa PA7]
 gi|150961419|gb|ABR83444.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa PA7]
          Length = 621

 Score = 82.8 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 86/268 (32%), Gaps = 10/268 (3%)

Query: 54  GDISKRIALLKLQKINGELEKIAVQELIV----ETLKKQEIEKSGITFDSNTVNYFFVQH 109
             + +++   +LQ      +++ + +L               +S    +  T ++  +  
Sbjct: 137 DQVIRQMNYSRLQFRQMLGQEMLIGQLRAGLAGTGFVTDNELQSFARLERQTRDFATLAV 196

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
             +   S+              + F     +   + ++ K+ F  +    + ++ A  QK
Sbjct: 197 KADASKSSVAEDEVKAFYEGHKSEFMTPEQVVVEYVELKKSSFFDQVKVKQEDLDALYQK 256

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HD 228
                  +     +L     N   +    + +I + +    +        ++F+  I   
Sbjct: 257 EIANLSEQRDAAHILI--EVNDKTSDEQARAKIDEIKARLAKGEDFAALAKEFSQDIGSA 314

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALK 285
            + G   Y       P F+  L    Q   + P  T  G   I +   +  ++    +LK
Sbjct: 315 ATGGDLGYAGRGVYDPAFEEALYALKQGEVSAPVKTPYGYHLIKLLGVQAPEVPSLESLK 374

Query: 286 AYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             L  +     +E+   E  K L S+A 
Sbjct: 375 PKLEDELKKQMVEQRFVEATKDLESSAY 402



 Score = 67.0 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/328 (9%), Positives = 92/328 (28%), Gaps = 27/328 (8%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++++  +    +       S +   +NG+ I+  ++ + +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60

Query: 61  ALLKLQ-------------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
            + + Q               +  L++ A++ LI  TL  Q  +     F    ++   +
Sbjct: 61  DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
           Q      +  +  +   D+     N+ +           ++        G   +     +
Sbjct: 121 QTPE-FQVDGKFNADRFDQVIRQMNYSRLQFRQMLGQEMLIGQLRAGLAGTGFVTDNELQ 179

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
              +            + +        +  V+   +  +   +   +   +  +      
Sbjct: 180 SFARLERQTRDFATLAVKADASKSSVAEDEVKAFYEGHKSEFMTPEQVVVEYVELKKSSF 239

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY-IAICDKRDLGGEIALKA 286
              +     + + DL   +Q           N    +      I + DK       A   
Sbjct: 240 FDQV----KVKQEDLDALYQK-------EIANLSEQRDAAHILIEVNDKTSDEQARAKID 288

Query: 287 YLSAQNTP-TKIEKHEAEYVKKLRSNAI 313
            + A+            E+ + + S A 
Sbjct: 289 EIKARLAKGEDFAALAKEFSQDIGSAAT 316


>gi|255014825|ref|ZP_05286951.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_7]
          Length = 454

 Score = 82.8 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/274 (9%), Positives = 81/274 (29%), Gaps = 12/274 (4%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ--KINGEL 72
           ++     +        +      +   I   +  + I   DI  +    + +  +++G+ 
Sbjct: 1   MMKKILSVFFLACCSCLVMAQDNVIDEIVWVVGDDAILRSDIETQRLYNQNEGVRLDGDP 60

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
             +  +++ ++ L   + +   IT + N V     Q                +  G   +
Sbjct: 61  YCVIPEQMAIQKLYLNQAKIDSITVNENQVIQSVDQWMNMAVNQIGSREKLEEYFGKKFS 120

Query: 133 HFKQYLA---IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS--- 186
             K        +      +++  + +      E+     ++   ++        +     
Sbjct: 121 QIKDERKEMVREQQVVQQMQHQLIGEIKLTPSEVRKYFSQLSQDSLPNIPTTVEVQIVTL 180

Query: 187 -IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHP 244
                  +      +     E+      +       ++         G+  ++ ++ L P
Sbjct: 181 EPKIPFEETDAIKARLRDFTEQVNSGKMEFSTLARLYSEDPGSASRGGELGFMSKTQLLP 240

Query: 245 QFQNLLKKSQN--NTTNPYVTQKGVEYIAICDKR 276
           +F N+    ++    +    T+ G   I + +KR
Sbjct: 241 EFANVAFNLKDPKRVSQIVQTEYGYHIIQLIEKR 274


>gi|145640428|ref|ZP_01796012.1| stationary-phase survival protein SurA [Haemophilus influenzae
           R3021]
 gi|145275014|gb|EDK14876.1| stationary-phase survival protein SurA [Haemophilus influenzae
           22.4-21]
          Length = 162

 Score = 82.8 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 2/160 (1%)

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
            ++    K   + +  +EY +R +L  +       Q   Q     ++    +       L
Sbjct: 1   MLKEAKEKGTAQKVMGKEYEVRHILLKLNPLLNDAQAKKQLAKIRSDIIAGKTTFADAAL 60

Query: 220 EKFASKIHDVSIGKAQY-LLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           +     +   + G   Y   E+      Q ++K  Q   + P+ T+ G   + +   RD 
Sbjct: 61  KYSKDYLSGANGGSLGYAFPETYAPQFAQTVVKSKQGVISAPFKTEFGWHILEVTGVRDG 120

Query: 279 GGEIALKAY-LSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
                        +   T+++    ++VK LR  A I Y+
Sbjct: 121 DLTAEAYTQKAYERLVNTQLQDATNDWVKALRKRANIQYF 160


>gi|15611231|ref|NP_222882.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
           J99]
 gi|10720360|sp|Q9ZMQ7|Y175_HELPJ RecName: Full=Uncharacterized protein jhp_0161; Flags: Precursor
 gi|4154677|gb|AAD05744.1| putative PEPTIDYL-PROLYL CIS-TRANS ISOMERASE [Helicobacter pylori
           J99]
          Length = 299

 Score = 82.8 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 81/281 (28%), Gaps = 29/281 (10%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            S+ +  T++G  IT  D    I          +L++   + LI + ++   +E      
Sbjct: 40  ASAGVLATVDGRPITKSDFD-MIKQRNPNFDFDKLKEKEKEALIEQAIRTALVENEA--- 95

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                       A     + E  +     +      F              + + + K  
Sbjct: 96  -----------KAEKLNQTPEFKAMMEAVKKQALVEFWAKK----------QAEEVKKIQ 134

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E E+       K+    +         +       +   +   +   +   +  +  N
Sbjct: 135 IPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELAN 194

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDK 275
           +     +  +  + G      ++ + P F +     +  + T  P  T+ G   I +  K
Sbjct: 195 RDTIDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGDYTKTPVKTEFGYHIIYLISK 254

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                      K  +         ++   + +++LR +A I
Sbjct: 255 DSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEELRKHAKI 295


>gi|332525967|ref|ZP_08402108.1| putative exported isomerase [Rubrivivax benzoatilyticus JA2]
 gi|332109518|gb|EGJ10441.1| putative exported isomerase [Rubrivivax benzoatilyticus JA2]
          Length = 270

 Score = 82.8 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 76/279 (27%), Gaps = 48/279 (17%)

Query: 43  RTTINGEVITDGDISKRIALLKL--QKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG+ +    +   +       Q+I  EL++ A  ++++  +  QE EK GI   ++
Sbjct: 30  IAVVNGKPVPKSRVETLLQQAARAGQQIGPELQQQARDQVVLREIFVQEAEKKGIATSAD 89

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                              +      +  ++  +          
Sbjct: 90  YKAQ------------------------------MELARQSILIRELFDSYRKTHPVTDA 119

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
                  +     +  EY  R +L    D   +    ++                    +
Sbjct: 120 DAQAEYDKFKAAASGTEYRARHILVETEDEAKKLIAQIK-----------SGGSFEELAK 168

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAICDKRD 277
           K +       + G   +       P+F   +    +   T  P  +Q G   I + D R+
Sbjct: 169 KHSKDPGSGENGGDLDFAKPDAYVPEFSQAMAALKKGEMTQTPVKSQFGWHIIRLDDTRE 228

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                     +  Q      +    +Y ++LR  A   Y
Sbjct: 229 AQF--PAFDDVKDQIKQRIEQARLQQYQEELRKKARTDY 265


>gi|291278663|ref|YP_003495498.1| peptidyl-prolyl cis-trans isomerase SurA [Deferribacter
           desulfuricans SSM1]
 gi|290753365|dbj|BAI79742.1| peptidyl-prolyl cis-trans isomerase SurA [Deferribacter
           desulfuricans SSM1]
          Length = 304

 Score = 82.8 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/297 (11%), Positives = 94/297 (31%), Gaps = 21/297 (7%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDIS-------KRIALLKLQKINGEL----EKIAVQEL 80
           +     +  ++   +  ++IT  D+        K+I  +K +    +L     K  +  L
Sbjct: 16  TIAQSKIIDKVVAIVGDKIITQYDVESFNPKQVKKIYSIKDEATREKLLKKYYKEVLDFL 75

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           + + + +   E+ GI    + V     +      ++ E     L++  +    +K  L  
Sbjct: 76  VNQYVLEIAAEREGIKVSESEVENALNEVLTKNNITIEQLEKVLEENNLTLAKYKYQLKN 135

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           + +   +     + K    E +I     +       +      +              + 
Sbjct: 136 EILNARIRNALILPKLVVTEEDIKHYIDEHNKELKLDDQFELRIIK---------IKDKN 186

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP 260
           R+ + E+   +     +   K++      S G   ++  + L  + +  +K  +      
Sbjct: 187 RLDEIEKFLKKGGSFADAAIKYSVDKTAKSGGYIGWIKLNHLPEKIREKVKGYKEGDIVK 246

Query: 261 YVTQKGVEYIAICD-KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                 +  + I + K     +  +K  +  +            +++K ++   I Y
Sbjct: 247 IEDNGEITLLFIENFKSKYDIDDKMKDEIVKKIKEKMYPDVVKNWLEKHKATIFIKY 303


>gi|291614259|ref|YP_003524416.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sideroxydans
           lithotrophicus ES-1]
 gi|291584371|gb|ADE12029.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sideroxydans
           lithotrophicus ES-1]
          Length = 628

 Score = 82.8 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/252 (7%), Positives = 60/252 (23%), Gaps = 10/252 (3%)

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ--HARNTGLSAEDFSSFLD 125
               L +   +         + I +  I  +             A           +  +
Sbjct: 152 RQAVLLQQLTESYTQNGYAPESIAEKLIHLNEQQRVVAIADLDAAAFVKQVKLSDGAVSE 211

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
                   F+     Q  +  +  +  + +    + E+    ++ +     +        
Sbjct: 212 YYNKNLQEFQLPERAQVQYVVLSSDSLLSQVKVRDEEVKQYYEEHQADFGTQEQRHAAHI 271

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPK----DCNKLEKFASKI-HDVSIGKAQYLLES 240
            I   K  +    Q     AE+    + +         ++++       + G        
Sbjct: 272 LITVPKQASDAEKQAARTKAEQILKLVKQSPAKFAALAKQYSQDPGSASNGGDLGEFGRG 331

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
            +   F++ +        ++   T  G   I +   +     I   A +          +
Sbjct: 332 AMVKPFEDSVFSLKVGQVSDLVQTDFGYHIIKLIAVKPAK--IQALAEVRDMIIQQLKLQ 389

Query: 300 HEAEYVKKLRSN 311
              +   +L   
Sbjct: 390 RANDMFAELAEK 401



 Score = 45.1 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 41/123 (33%), Gaps = 14/123 (11%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI------- 68
           +    +++ F    + SY++ + ++    T+NGE I   +    +   + +         
Sbjct: 14  IVLALIILPFAFWGVTSYRNSSGTAP-LATVNGEKIGQQEFDSAMNQQQQRVREMAGANF 72

Query: 69  ------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
                   E++   +  L+ + L   E +K G++     V    V           D   
Sbjct: 73  DPAFFDKPEIKFSLLDRLVTQHLMAMEAKKVGLSITDEQVGQIIVNIGAFQQDGRFDRQR 132

Query: 123 FLD 125
           +  
Sbjct: 133 YEA 135


>gi|57168199|ref|ZP_00367338.1| probable periplasmic protein Cj1289 [Campylobacter coli RM2228]
 gi|305431656|ref|ZP_07400825.1| SurA domain protein [Campylobacter coli JV20]
 gi|57020573|gb|EAL57242.1| probable periplasmic protein Cj1289 [Campylobacter coli RM2228]
 gi|304445251|gb|EFM37895.1| SurA domain protein [Campylobacter coli JV20]
          Length = 271

 Score = 82.8 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 88/296 (29%), Gaps = 32/296 (10%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           I+   V  +S       + I   ++ E IT  DI + +  L +       +  A+  LI 
Sbjct: 4   ILLSFVFFISLTHANTINAIAVVVDKEPITTYDIEQTMKTLNI------PKNQALGILIN 57

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           E ++  +I++ GI      ++    +      +S EDF   L  +G     F+       
Sbjct: 58  EKMELSQIKQFGIYTSELELDNAIGKMLAQNKISLEDFKRDLQAKGQNYEQFRSNFKKDF 117

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
               +              +  A K   +N           +     N  Q+   ++   
Sbjct: 118 EKRKL-YEKIASTAKTDFSDEGAKKFFEQNKNKFTLFTEINVNIYRSNNAQDLENIKAT- 175

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYV 262
                      K   K EK     ++        L                  + +    
Sbjct: 176 ----------TKTALKAEKATLTPNNSDPRLLGLLSS------------IPIGSFSPVLN 213

Query: 263 TQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +QKG E   + DK          +K  +       + + +  +Y  KLRS   I Y
Sbjct: 214 SQKGYEIYQVKDKNGGQTPEYYQIKNEILNAYVSEQRQNYIQDYFDKLRSKINIEY 269


>gi|317013595|gb|ADU81031.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
           Gambia94/24]
          Length = 299

 Score = 82.8 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 81/281 (28%), Gaps = 29/281 (10%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            S+ +  T++G  IT  D    I          +L++   + LI + ++   +E      
Sbjct: 40  ASAGVLATVDGRPITKSDFD-MIKQRNPNFDFDKLKEKEKEALIEQAIRTALVENEA--- 95

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                       A     + E  +     +      F              + + + K  
Sbjct: 96  -----------KAEKLNQTPEFKAMMEAVKKQALVEFWAKK----------QAEEVKKVQ 134

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E E+       K+    +         +       +   +   +   +   +  +  N
Sbjct: 135 IPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEIDKQPKTKKEAKFIELAN 194

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDK 275
           +     +  +  + G      ++ + P F +     +  N T  P  T+ G   I +  K
Sbjct: 195 RDTIDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGNYTKTPVKTEFGYHIIYLISK 254

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                      K  +         ++   + +++LR +A I
Sbjct: 255 DSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEELRKHAKI 295


>gi|262383884|ref|ZP_06077020.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_33B]
 gi|262294782|gb|EEY82714.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_33B]
          Length = 454

 Score = 82.8 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/274 (9%), Positives = 84/274 (30%), Gaps = 12/274 (4%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ--KINGEL 72
           ++     +        +      +   I   +  + I   DI  +    + +  +++G+ 
Sbjct: 1   MMKKILSVFFLACCSCIVMAQDNVIDEIVWVVGDDAILRSDIETQRLYNQNEGVRLDGDP 60

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR---NTGLSAEDFSSFLDKQGI 129
             +  +++ ++ L   + +   IT + N V     Q      N   S E    +  K+  
Sbjct: 61  YCVIPEQMAIQKLYLNQAKIDSITVNENQVIQSVDQWMNMAVNQIGSREKLEEYFGKKFS 120

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS--- 186
                ++    +      ++   + +      E+     ++   ++        +     
Sbjct: 121 QIKDERKEAMREQQVVQQMQQQLIGEIKLTPSEVRKYFSQLSQDSLPNIPTTVEVQIVTL 180

Query: 187 -IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHP 244
                  +      +     E+      +       ++         G+  ++ ++ L P
Sbjct: 181 EPKIPFEETDAIKARLRDFTEQVNSGKMEFSTLARLYSEDPGSASRGGELGFMSKTQLLP 240

Query: 245 QFQNLLKKSQN--NTTNPYVTQKGVEYIAICDKR 276
           +F N+    ++    +    T+ G   I + +KR
Sbjct: 241 EFANVAFNLKDPKRVSQIVQTEYGYHIIQLIEKR 274


>gi|302345883|ref|YP_003814236.1| PPIC-type PPIASE domain protein [Prevotella melaninogenica ATCC
           25845]
 gi|302149858|gb|ADK96120.1| PPIC-type PPIASE domain protein [Prevotella melaninogenica ATCC
           25845]
          Length = 480

 Score = 82.8 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/271 (10%), Positives = 74/271 (27%), Gaps = 17/271 (6%)

Query: 35  SWAMSSRIRTTINGEVITDGDIS-KRIALLKLQKI-NGELEKIAVQELIVETLKKQEIEK 92
             ++   +   +  E I   ++   R+         NG+ E I  +++ V+ L   +   
Sbjct: 49  PNSVVDEVIWVVGDEPILKSEVEIMRLQSEAEGMKWNGDPECILPEQIAVQKLFLHQAAL 108

Query: 93  SGITFDSNTVNYFFVQHARNTGL-----SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
             +    + +                  S E   +F +K                +    
Sbjct: 109 DSVEVSESEIARGIDDQINYWISLPQIGSKEKLEAFQNKSMTQIRQDLHDDYKNRLLVQK 168

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           V+ + +        E+    +K+   ++        +  +          + +      +
Sbjct: 169 VQQNLVNDVAVSPAEVREYFKKLPVDSIPMIPTTVEVEILTQTPKIETEEINRIKNQLRD 228

Query: 208 SRLRLPKDCNKLEKFASKIH-----DVSIGKAQYLLESDLHPQFQNLLKKSQN--NTTNP 260
              R+ K        A             G+  Y+    L P F        +    +  
Sbjct: 229 YTDRVTKGETSFATLARLYSEDPGSARQGGELGYMGRGVLDPAFAAAAFNLTDPKKISKV 288

Query: 261 YVTQKGVEYIAICDKRDLGGEIALKAYLSAQ 291
             ++ G   I + D+R   G+     ++  +
Sbjct: 289 VESEFGYHIIQLIDRR---GDKVNVRHILLK 316


>gi|229171909|ref|ZP_04299476.1| Foldase protein prsA 2 [Bacillus cereus MM3]
 gi|228611543|gb|EEK68798.1| Foldase protein prsA 2 [Bacillus cereus MM3]
          Length = 285

 Score = 82.8 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/304 (10%), Positives = 77/304 (25%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + +++      SS    T     I   D  K++             K  
Sbjct: 4   KHIFIITALISILMLAACGQKNSSATVATATDSTIKKSDFEKQLK--------DRYGKDM 55

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           + E++ + +  ++ + S    D                   +    F           + 
Sbjct: 56  LYEMMAQDVITKKYKVSDDDVDKEVQ-----------KAKKQYGDQFTAVLENNRLKDEA 104

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 105 DFKNQIKFKLAMNEAIKKSVTEKDVKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ ++            ++ +  +      G   Y     + P+F+    K   
Sbjct: 145 SDENEAKEIKKKLDAGASFEELAKQESQDLLSKDKGGDLGYFNSGRMAPEFETAAYKLKV 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              +NP  +  G   I + DK+DL     +K  +       +I       + ++K    A
Sbjct: 205 GQISNPVKSPNGYHIIKLTDKKDLKPYDEVKDSIRKNLEAERIADPTFSHKLIQKELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|197284031|ref|YP_002149903.1| peptidyl-prolyl cis-trans isomerase D [Proteus mirabilis HI4320]
 gi|194681518|emb|CAR40403.1| peptidyl-prolyl cis-trans isomerase D [Proteus mirabilis HI4320]
          Length = 625

 Score = 82.8 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/398 (9%), Positives = 104/398 (26%), Gaps = 87/398 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + ++ ++    +    +++ F +  +  Y   +  +     +NG  I+   + +  
Sbjct: 1   MMDNIRSTANNPFIKILLAVIILSFVLTGVGGYLFSSGVND-AAEVNGYKISRAQLEQAY 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + Q                     + + A+  LI + L  Q  ++ GI+     +  
Sbjct: 60  QQRRAQLQKDMGDNFASLASSDEGQKMIRQQALNVLINQALLDQFAQELGISAGDQQIRD 119

Query: 105 FFV---QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
                     +     + +   L    I  + F + +    I   +  +           
Sbjct: 120 AIFALPYFQTDGKFDNKKYVELLTANNIDADAFAEGIRQNLINQQLRYSIQGTDFALESE 179

Query: 152 -----------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                  F+ K    + E+ A   +  ++ +    ++     + 
Sbjct: 180 VKDFAGLMLQSRNVRLASLDIQPFLEKETVSDEELKAFYDQNTSMFIAPAQVKVSYIQLE 239

Query: 189 DNKLQNQGFV-------------------------------QKRIKDAEESRLRLPKDCN 217
             K  +   +                               +   K+AE++         
Sbjct: 240 AQKDLSNITISDDEVKAYYDSNISEFTVPGQKKYSLLVLADETAAKEAEDALKNGADFVT 299

Query: 218 KLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
            +++ +         G   ++      P+  N     +   + P     G     + D +
Sbjct: 300 LVKEKSIDTFSAKQDGSLGWITIGQELPELANASLTEKGQISQPVKISNGYAIFRLDDIK 359

Query: 277 D--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
              +     +KA L  +    K         +K+   A
Sbjct: 360 PSVVKPFDDIKADLLVKMRENKAIDDFFALQQKVSQAA 397



 Score = 36.6 bits (82), Expect = 5.2,   Method: Composition-based stats.
 Identities = 7/49 (14%), Positives = 14/49 (28%)

Query: 269 YIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            I +    D         +++        E+     +  LR  A I  +
Sbjct: 572 LIQLDSVTDGKPTAEQLEFMTNLYRAQMGEEALQLMLSDLREKAKIEIF 620


>gi|313672046|ref|YP_004050157.1| ppic-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938802|gb|ADR17994.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 345

 Score = 82.8 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/313 (10%), Positives = 88/313 (28%), Gaps = 20/313 (6%)

Query: 7   TSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ 66
            ++ +  K L     + IF           + + +    I  +     DI + I      
Sbjct: 34  YNVKNMKKYLICMLCVFIFGACEKSRDIFTSRNEKPVVVIGKDKYYQKDIIEFIYFELPD 93

Query: 67  KINGELE-KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
                L+ K   +E+I E +K + +                   A     +         
Sbjct: 94  IDPSTLKDKDFKKEIINEFIKHKLLLMEAKKAKVTVDKKALKDIASKLTTNNAPKVIDEK 153

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
            + +        +  + +    +++    +    E E+ A  ++       +        
Sbjct: 154 FEKL--------MEEKLLAQKFLEDKIKSEIKISEEELRAYYEEFIKTKQSKVYYHIYQI 205

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ 245
              D              +A +      +  +  ++++S     + G    +   +  P 
Sbjct: 206 VNEDKHKIE---------EAYKLLKSGKRFEDVAKEYSSGPEAENGGDMGIVDIENFPPV 256

Query: 246 FQNLLKKSQNNTTNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAE 303
           F  +     N  +    ++ G   I + +    D      +K  L  +    K +++   
Sbjct: 257 FDLVKNLKPNEISKIVSSEYGYHIIMLKETISSDKPSFEEIKDLLLDELIAEKKDQYLEN 316

Query: 304 YVKKLRSNAIIHY 316
           Y+K+   +  +  
Sbjct: 317 YLKEKMKDVKVEI 329


>gi|325268743|ref|ZP_08135371.1| peptidyl-prolyl cis-trans isomerase [Prevotella multiformis DSM
           16608]
 gi|324988911|gb|EGC20866.1| peptidyl-prolyl cis-trans isomerase [Prevotella multiformis DSM
           16608]
          Length = 480

 Score = 82.8 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/268 (10%), Positives = 72/268 (26%), Gaps = 14/268 (5%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--GELEKIAVQELIVETL 85
           VP  + ++  +   +   +  E I   ++       + + +   G+ E +  +++ V+ L
Sbjct: 42  VPAATDRANNVVDEVIWVVGDEPILKSEVEIMKLQGEAEGMKWDGDPECVLPEQIAVQKL 101

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTG--LSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
              +     I    + +     Q                  + Q       +Q L     
Sbjct: 102 FLHQAALDSIEVTESEIAQGIDQQINYWISLPQIGSKEKLEEFQHKSMAQIRQDLHDDYK 161

Query: 144 WPDVVKN---DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
              +V+      +        E+    +K+   ++        +  +          + +
Sbjct: 162 NRQLVQKMQEKLVGDVKVSPAEVREYFRKLPVDSIPMIPTTVEVEILTQTPKVEPEEINR 221

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIH-----DVSIGKAQYLLESDLHPQFQNLLKKSQN 255
                 +   R+ K        A             G+  Y+    L P F        +
Sbjct: 222 IKNQLRDYTDRITKGETSFATLARLYSEDPGSARQGGELGYMGRGMLDPTFAAAAFNLTD 281

Query: 256 --NTTNPYVTQKGVEYIAICDKRDLGGE 281
               +    ++ G   I + D+R     
Sbjct: 282 PKKVSKVVESEFGYHIIQLIDRRGDKVN 309


>gi|319779226|ref|YP_004130139.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Taylorella
           equigenitalis MCE9]
 gi|317109250|gb|ADU91996.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Taylorella
           equigenitalis MCE9]
          Length = 258

 Score = 82.8 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/305 (14%), Positives = 95/305 (31%), Gaps = 56/305 (18%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL-KLQKINGELEK 74
           +    ++     +P+ +            T+NG  IT+ +  +    + K  +I  E +K
Sbjct: 1   MKKILLVASLLALPVYAQN--------VATVNGVNITNQEFEEVTKAIFKDAQITAEQKK 52

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             +++L+   +  QE +K  I  D                                    
Sbjct: 53  GILEDLVTREVLIQEAKKQKIDQDPQVAKQI----------------------------- 83

Query: 135 KQYLAIQSIWPDVVKNDFMLK-YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
            ++   Q +   ++            E++   + Q      V++Y +R +L    D   +
Sbjct: 84  -EFSREQILTTALLSKYIEKNPVKEEEIKKLYDSQIKALGDVKQYNVRHILVKDEDRAKE 142

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKK 252
               +  +         ++       ++   +      G   +   S+  PQF + + + 
Sbjct: 143 LYQQLVDK---------KIDFAETAKKESIDQGTASGGGVLGWHPSSNFVPQFAKAVEEA 193

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
                T P  +  G   I + D R        A K  +    +  K+ K    Y ++L+ 
Sbjct: 194 KIGVLTEPVKSDFGYHLILVDDIRPTPLPSFEASKREIVNALSLEKVNK----YTEELKK 249

Query: 311 NAIIH 315
            A I 
Sbjct: 250 KAKIK 254


>gi|217033999|ref|ZP_03439421.1| hypothetical protein HP9810_891g3 [Helicobacter pylori 98-10]
 gi|216943507|gb|EEC22958.1| hypothetical protein HP9810_891g3 [Helicobacter pylori 98-10]
          Length = 299

 Score = 82.8 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 81/281 (28%), Gaps = 29/281 (10%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            S+ +  T++G  IT  D    I          +L++   + LI + ++   +E    T 
Sbjct: 40  SSAGVLATVDGRPITKSDFD-MIKQRNPNFDFDKLKEKEKEALIDQAIRTALVENEAKT- 97

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                             + E  +     +      F              + + + K  
Sbjct: 98  -------------ERLDSTPEFKAMMEAVKKQALVEFWAKK----------QAEEVKKIQ 134

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E E+       K+    +         +       +   +   +   +   +  +  N
Sbjct: 135 IPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELAN 194

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDK 275
           +     +  +  + G      ++ + P F +     +  + T  P  T+ G   I +  K
Sbjct: 195 RDTIDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGDYTKIPVKTEFGYHIIYLISK 254

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                      K  +         ++   + +++LR +A I
Sbjct: 255 DSPVTYTYDQAKPTIKGMLQEKLFQERMNQRIEELRKHAKI 295


>gi|149928383|ref|ZP_01916623.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Limnobacter sp.
           MED105]
 gi|149822918|gb|EDM82164.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Limnobacter sp.
           MED105]
          Length = 633

 Score = 82.8 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 19/189 (10%), Positives = 54/189 (28%), Gaps = 6/189 (3%)

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
                        F         +  +  +    K    + +I A  ++ K         
Sbjct: 208 EQVAAFYETNKAQFMAPQKADVEYVVLSPDTIKSKIEVSDADIAAYYEQNKARFSTPEER 267

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP--KDCNKLEKFASKI-HDVSIGKAQYL 237
           R     +   K        K   +   + L+    K     ++++         G   + 
Sbjct: 268 RARHILLDAEKEGASADDLKAAAEKVLAELKANPSKFAELAKQYSIDPGSANQGGDLGFF 327

Query: 238 LESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTP 294
            +  + P+F+     + +   +    +Q G   + + + R  ++     +K  ++ +   
Sbjct: 328 GKGAMVPEFEQAVFSQKKGELSGLVKSQFGYHIVEVTEIRGGEVQALEDVKTQIADEIKN 387

Query: 295 TKIEKHEAE 303
            K+    A+
Sbjct: 388 QKMTAQFAD 396



 Score = 50.8 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/326 (8%), Positives = 87/326 (26%), Gaps = 41/326 (12%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK----RIALLKL 65
              ++ +   F+   F +  +  Y + +  +     +    I+  +  +    RI   + 
Sbjct: 8   QKIMQFVLLLFIAPAFALFGLEGYNTVSADANALAIVGDYPISQEEFDQVKRERIEEARA 67

Query: 66  QKING---------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
           Q             E+ +  +  L+++ L +Q ++K  +T     +     +        
Sbjct: 68  QSGENFDPKVFESPEINRQLLDTLVLQYLLQQSVQKQYLTASDKALAEDIARTPLFQVDG 127

Query: 117 AEDFSSFLD--------KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
             D  ++                N        Q + P +  + F         ++    +
Sbjct: 128 KFDLETYKRELAARGLTPTQHEANVRFGLARNQVLDPVLRASFFPETLKTQLDDVQLAGR 187

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
            ++   +        +    +         + +    +++ +          K   ++ D
Sbjct: 188 VVRVKNIDLAPYLANVSITDEQVAAFYETNKAQFMAPQKADVEYVVLSPDTIKSKIEVSD 247

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
                                 ++++   + P   ++    + +  +++      LKA  
Sbjct: 248 ---------------ADIAAYYEQNKARFSTP-EERRARHIL-LDAEKEGASADDLKAAA 290

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNAII 314
                  K          +L     I
Sbjct: 291 EKVLAELKANP---SKFAELAKQYSI 313


>gi|32473571|ref|NP_866565.1| peptidyl-prolyl cis-trans isomerase [Rhodopirellula baltica SH 1]
 gi|32398251|emb|CAD78346.1| probable peptidyl-prolyl cis-trans isomerase [Rhodopirellula
           baltica SH 1]
          Length = 626

 Score = 82.8 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 26/305 (8%), Positives = 80/305 (26%), Gaps = 30/305 (9%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
                  +  +    + +  A  + +   +N + I+   +                    
Sbjct: 49  LLLAAAFVAILSGFSTMRVEAAENSVVAVVNADPISRDSL--------ATASVQRYGTDV 100

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           +  LI   L  QE ++ G+   +  V     + A+  GL+ E +   L      D    Q
Sbjct: 101 LDNLINRHLIMQECKRRGLGVTTEEVRTEINRVAKKFGLNVESYLQLL--NEERDITPDQ 158

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
           Y          ++     +    + E            ++  ++                
Sbjct: 159 YSREIIWPMLALRKLVADEVAVSQDEFNRAFVSQFGEAIKCRMVMV-------------Q 205

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ--FQNLLKKSQ 254
              +  +   ++           ++F+      S+G     +   +  +   +       
Sbjct: 206 DKSQATQLRAQAVAEPSSFARLAKEFSEDPTSASVGGLIPPIRRYMGDETIEEAAFALKV 265

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIA-----LKAYLSAQNTPTKIEKHEAEYVKKLR 309
           +  +          ++    +             +K  +  +    K++   ++   +L+
Sbjct: 266 DEVSELLPVGDHWMFLQAVRRMPASTPSPQAMPAIKDQIEDRIRDEKMKTAASQLFAQLQ 325

Query: 310 SNAII 314
             A +
Sbjct: 326 EQAQV 330



 Score = 66.2 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/292 (9%), Positives = 91/292 (31%), Gaps = 18/292 (6%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
           + + ++ A    +   ING+ ++  +++                +  ++  I   L  Q 
Sbjct: 334 LGAPQASAKHPGVAAIINGQQVSISNVAAEC--------IKRHGESVLEGEINRKLLTQA 385

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
           + K+G    +  +     + A + G   ++ S+ +                  I   V  
Sbjct: 386 LAKAGKKVTNEDLKAEIERAAISFGYMTDNGSADVQGWFDAVLEGGPGTREVYIEDVVWP 445

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
           +  + K   +E E    ++ ++      Y  R  + +   +  ++     +++ +     
Sbjct: 446 SVALKKL--VEDETVLTQEDLQIGFESHYGPRAEVLACVLSDQRS----AQKVWEMARDN 499

Query: 210 LRLPKDCNKLEKFASKI-HDVSIGKAQYLLE-SDLHPQFQNLLKKSQNNTTNPYVTQKGV 267
                      +++ +     + GK   + +        + + +    + +    T    
Sbjct: 500 PTDQFFGQLANQYSIEPVSSSNFGKVPPIRQHGGQPSVEKEVFQMKPGDLSGIIATGDKY 559

Query: 268 EYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
             +      +  +    A++  L +     K+    +    +L+  A I  +
Sbjct: 560 IILRCQGFTEPVVSDFEAVQEELRSVLIEKKMNVAMSLKYDELKQTAEIDNF 611


>gi|53723651|ref|YP_103096.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Burkholderia mallei ATCC 23344]
 gi|121601461|ref|YP_993254.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Burkholderia mallei SAVP1]
 gi|124384406|ref|YP_001029302.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Burkholderia mallei NCTC 10229]
 gi|126440095|ref|YP_001059336.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 668]
 gi|126450119|ref|YP_001080762.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Burkholderia mallei NCTC 10247]
 gi|134277391|ref|ZP_01764106.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 305]
 gi|166998724|ref|ZP_02264578.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei PRL-20]
 gi|167719141|ref|ZP_02402377.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           pseudomallei DM98]
 gi|167902279|ref|ZP_02489484.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|217421758|ref|ZP_03453262.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 576]
 gi|237812660|ref|YP_002897111.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei MSHR346]
 gi|238562190|ref|ZP_00440767.2| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei GB8 horse 4]
 gi|254177766|ref|ZP_04884421.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei ATCC 10399]
 gi|254179444|ref|ZP_04886043.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 1655]
 gi|254200043|ref|ZP_04906409.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei FMH]
 gi|254206378|ref|ZP_04912730.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei JHU]
 gi|254358208|ref|ZP_04974481.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei 2002721280]
 gi|52427074|gb|AAU47667.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei ATCC 23344]
 gi|121230271|gb|ABM52789.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei SAVP1]
 gi|124292426|gb|ABN01695.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei NCTC 10229]
 gi|126219588|gb|ABN83094.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 668]
 gi|126242989|gb|ABO06082.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei NCTC 10247]
 gi|134251041|gb|EBA51120.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 305]
 gi|147749639|gb|EDK56713.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei FMH]
 gi|147753821|gb|EDK60886.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei JHU]
 gi|148027335|gb|EDK85356.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei 2002721280]
 gi|160698805|gb|EDP88775.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei ATCC 10399]
 gi|184209984|gb|EDU07027.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 1655]
 gi|217395500|gb|EEC35518.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 576]
 gi|237503368|gb|ACQ95686.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei MSHR346]
 gi|238523045|gb|EEP86486.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei GB8 horse 4]
 gi|243065078|gb|EES47264.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           mallei PRL-20]
          Length = 259

 Score = 82.8 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 80/278 (28%), Gaps = 48/278 (17%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKING--ELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I        IA L  Q      +LE+   QEL+   +  QE  K GI    +
Sbjct: 25  IAVVNGTPIPKSRADAMIAQLVQQGQQDTPQLEQAVRQELVNREILMQEAIKRGIPNRPD 84

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q+     +  DF+ K    +
Sbjct: 85  VKAQIV-------------------------------VAQQTAVLRALIEDFLKKNQPSD 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+ A    +             +              +++ KD         K  +  +
Sbjct: 114 TELKARYDDLVKNAGGREYHLHHILVDN----------EQQAKDLIAKIKGGAKFEDLAK 163

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAICDKRD 277
           +++       + G   +       P+F    ++  +   T+ P  TQ G   I + D R 
Sbjct: 164 QYSKDPGSAKNGGDLDWSDPKAYVPEFAAAAQQLQKGQMTDTPVKTQFGWHIIRVDDVRS 223

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +         +  Q     +++    + + LR  A I 
Sbjct: 224 ITP--PPFEQVKQQIAQQMVQQKLQAFEESLRQQAKIQ 259


>gi|282878157|ref|ZP_06286954.1| PPIC-type PPIASE domain protein [Prevotella buccalis ATCC 35310]
 gi|281299735|gb|EFA92107.1| PPIC-type PPIASE domain protein [Prevotella buccalis ATCC 35310]
          Length = 484

 Score = 82.8 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/297 (11%), Positives = 84/297 (28%), Gaps = 19/297 (6%)

Query: 34  KSWAMSSRIRTTINGEVITDGDIS-----KRIALLKLQKING--ELEKIAVQELIVETLK 86
              ++   +   +  E I   D+           +K ++       E+IAVQ+L +   +
Sbjct: 44  PESSVIDEVIWVVGDEPIMKSDVEMSRLQAEAEGIKFKRNPDFAIPEQIAVQKLFLHQAE 103

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
              ++       +N       +     G S E    +  +         +     ++   
Sbjct: 104 LDSVKVQESQVTANIERQ-INRWIEMAGGSVERLEQYRGQSIAQMRSQLRDDFRNNLLVQ 162

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
            ++   +        ++ A  + +   ++        +  I          + +   +  
Sbjct: 163 SMQEKLVEDVKVTPSDVRAYFKNLPEDSIPFVPTEVEVEIITRTPRILPEEINRVKDELR 222

Query: 207 ESRLRLPKDCNKLEKFASKIH-----DVSIGKAQYLLESDLHPQFQNLLKKSQN--NTTN 259
               R+ K        A             G+  Y     L P F N+     +    + 
Sbjct: 223 NYTERVTKGETTFATLARLYSEDPGSARQGGEMDYTGRGMLDPAFANVAFNLTDPKKISK 282

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK---HEAEYVKKLRSNAI 313
              T+ G   I + DKR    +      +  + T  ++ K          +LR ++ 
Sbjct: 283 IVETEFGFHIIQLVDKRGDKIK-VRHILIKPKVTDEEVNKTLMRLDSVATQLRKDSF 338


>gi|213582060|ref|ZP_03363886.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 405

 Score = 82.4 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/396 (9%), Positives = 102/396 (25%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     S+     +NG+ I+        
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL-IGGSNNYAAKVNGQEISRAQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                             +++ +++ G+  + + Q L  Q     ++             
Sbjct: 120 AIFATPAFQVDGKFDNNRYNAIVNQMGMTADQYTQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                N    K    + E+ +   + K   +     R     + 
Sbjct: 180 TDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                             +  +        
Sbjct: 240 AATMQAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFATLA 299

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++  I   + G   +L ES   P+ +N   K +   +    +  G     + D +  
Sbjct: 300 KEKSTDIISARNGGDMGWLEESATVPELKNAGLKEKGQISGVIKSSVGFLVARLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDAA 395


>gi|254455883|ref|ZP_05069312.1| PPIC-type PPIASE domain protein [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207082885|gb|EDZ60311.1| PPIC-type PPIASE domain protein [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 309

 Score = 82.4 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 48/313 (15%), Positives = 104/313 (33%), Gaps = 21/313 (6%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK------I 68
           +  + + +I    + ++   S +  ++I   +N E+IT  DI   +  L++         
Sbjct: 2   IKISKYTIIFIIYLSLIINHSKSSENKILFKVNNEIITSLDILNEVQYLQIINKEFKNIK 61

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTV---NYFFVQHARNTGLSAEDFSSFLD 125
             +  +I+   LI E +K+ EI+K             N            S  +F  F  
Sbjct: 62  KEDAFQISKNSLIREKIKEIEIKKIIKDIKIKDQVLNNLILNYFKDLKITSIPEFEKFFL 121

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
            + I  N  ++ + ++ +W  ++   +       +  I  + +K    +           
Sbjct: 122 NKNINPNMIRKKITLEMLWNQLIYTKYKKNVKINKQLIINDLKKNDKQS--------EFL 173

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH-P 244
                   N+        +   + +           ++        GK  ++ ES L   
Sbjct: 174 ISEILFDINENENLNDKSNVINNSIEKNDFSQTALIYSISNTANKGGKLGWVKESILSKK 233

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN---TPTKIEKHE 301
            F  L K      TNP +   G   + + D R +  +  L   +       T  ++ +  
Sbjct: 234 IFNELKKLKIGEHTNPILVPGGFLILKLIDLRQVKKDFDLDKEIKKIVDEKTNQQLNRFS 293

Query: 302 AEYVKKLRSNAII 314
             Y  K++ + II
Sbjct: 294 NIYFNKVKKDTII 306


>gi|150008994|ref|YP_001303737.1| peptidyl-prolyl cis-trans isomerase [Parabacteroides distasonis
           ATCC 8503]
 gi|298375774|ref|ZP_06985730.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides sp.
           3_1_19]
 gi|301312044|ref|ZP_07217966.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides sp.
           20_3]
 gi|149937418|gb|ABR44115.1| peptidyl-prolyl cis-trans isomerase [Parabacteroides distasonis
           ATCC 8503]
 gi|298266811|gb|EFI08468.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides sp.
           3_1_19]
 gi|300830146|gb|EFK60794.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides sp.
           20_3]
          Length = 454

 Score = 82.4 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 25/274 (9%), Positives = 81/274 (29%), Gaps = 12/274 (4%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ--KINGEL 72
           ++     +        +      +   I   +  + I   DI  +    + +  +++G+ 
Sbjct: 1   MMKKILSVFFLACCSCIVMAQDNVIDEIVWVVGDDAILRSDIETQRLYNQNEGVRLDGDP 60

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
             +  +++ ++ L   + +   IT + N V     Q                +  G   +
Sbjct: 61  YCVIPEQMAIQKLYLNQAKIDSITVNENQVIQSVDQWMNMAVNQIGSREKLEEYFGKKFS 120

Query: 133 HFKQYLA---IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS--- 186
             K        +      +++  + +      E+     ++   ++        +     
Sbjct: 121 QIKDERKEMVREQQVVQQMQHQLIGEIKLTPSEVRKYFSQLSQDSLPNIPTTVEVQIVTL 180

Query: 187 -IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHP 244
                  +      +     E+      +       ++         G+  ++ ++ L P
Sbjct: 181 EPKIPFEETDAIKARLRDFTEQVNSGKMEFSTLARLYSEDPGSASRGGELGFMSKTQLLP 240

Query: 245 QFQNLLKKSQN--NTTNPYVTQKGVEYIAICDKR 276
           +F N+    ++    +    T+ G   I + +KR
Sbjct: 241 EFANVAFNLKDPKRVSQIVQTEYGYHIIQLIEKR 274


>gi|167765432|ref|ZP_02437545.1| hypothetical protein BACSTE_03822 [Bacteroides stercoris ATCC
           43183]
 gi|167697060|gb|EDS13639.1| hypothetical protein BACSTE_03822 [Bacteroides stercoris ATCC
           43183]
          Length = 455

 Score = 82.4 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/273 (10%), Positives = 82/273 (30%), Gaps = 12/273 (4%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKR--IALLKLQKINGELE 73
                +  +  +     Y    +   +   +  E I   ++ +    AL + +K + +  
Sbjct: 7   FKFVVLFALTLLAGSTVYGQDNVIDEVVWVVGDEAILKSEVEEARMSALYEGRKFDRDPY 66

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNY---FFVQHARNTGLSAEDFSSFLDKQGIG 130
            +  +E+ V+ L   +     I    + V     +      +   S E    + +K    
Sbjct: 67  CVIPEEIAVQKLFLHQAALDSIEVSESEVIQRVDYMTNMYISNIGSREKMEEYFNKTSSQ 126

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                +  A + +    ++   + +      E+    + +   ++     +  +  I   
Sbjct: 127 IRETLRENAREGLKVQKMQQKLVGEIKVTPAEVRRYFKDLPQDSIPYIPTQVEVQIITQQ 186

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-----HDVSIGKAQYLLESDLHPQ 245
                  ++   K   +   R+ K        A          +  G+ ++     L P 
Sbjct: 187 PKVPLEEIENVKKRLRDFTDRITKGETSFSTLARMYSEDRGSAIRGGEIEFSGRGMLDPA 246

Query: 246 FQN--LLKKSQNNTTNPYVTQKGVEYIAICDKR 276
           + N     +  N  +    ++ G   I + +KR
Sbjct: 247 YANVAFNLQDPNKVSKIVESEYGFHIIQLIEKR 279


>gi|309781952|ref|ZP_07676683.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia sp.
           5_7_47FAA]
 gi|308919296|gb|EFP64962.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia sp.
           5_7_47FAA]
          Length = 635

 Score = 82.4 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 45/396 (11%), Positives = 103/396 (26%), Gaps = 102/396 (25%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI------------ 60
           + L+    V   F    + SY S+  SS     ++G+VI+  ++  R+            
Sbjct: 1   MFLVLLILVFPSFVFFGVQSYSSFMDSSHDAAKVDGKVISTNEVDARVREQTERLRQMLG 60

Query: 61  -ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ-------HARN 112
                 Q    ++ +  +  +I + +   E+ ++ +T  +  +    +Q          +
Sbjct: 61  AQYDPRQFEGPQMRRDVLDGIIQQRVLANEVTRANLTISNEKIRDTILQIPAVAALRKPD 120

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK----------------------- 149
                E +   L  Q +     +  L  +     + +                       
Sbjct: 121 GSFDQEAYVRLLSAQNMTPEQLEGNLRFELSQQQIPQSIVSSAFVPKSLVDRLIQVRDQQ 180

Query: 150 ----------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG--- 196
                      D+  K    +  I A     +        ++         ++  Q    
Sbjct: 181 REVQALLFKPADYAAKVNADDKAIQAYYDAHQQEFSVPEQVKAEYVVFSGEEMMKQIPVT 240

Query: 197 -FVQKRIKDAEESRLRLPKDCNKL------------------------------------ 219
               K   D   +R +  ++                                        
Sbjct: 241 PEQLKEYYDQNAARFKTQEERRAAHILIKLPDNAKPADKEAAKKKAEEVLAEVRKNPASF 300

Query: 220 EKFASKIHDVSI-----GKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
              A K           G+  +L +    P F+N L   K   + ++   +  G   I +
Sbjct: 301 ADLAKKYSGDPGSAAQGGELGFLGKGATVPPFENALFALKQPGDISDVVQSDFGFHIIKL 360

Query: 273 CDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
            + +   +    A+K  L  +       K  +E   
Sbjct: 361 EEVKGGGVQPLEAVKPELERELRTQLANKKYSELAD 396


>gi|213581625|ref|ZP_03363451.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 139

 Score = 82.4 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 43/126 (34%), Gaps = 3/126 (2%)

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK 252
           +Q    K  + A + +          ++++         G   +       P F++ L K
Sbjct: 11  DQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTK 70

Query: 253 SQ-NNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
                 + P  +  G   I + D R +   + A K          K  +  A ++++ R+
Sbjct: 71  LHKGQISAPVHSSFGWHLIELLDTRKVDKTDAAQKDRAYRMLMNRKFSEEAATWMQEQRA 130

Query: 311 NAIIHY 316
           +A +  
Sbjct: 131 SAYVKI 136


>gi|299143243|ref|ZP_07036323.1| foldase protein PrsA [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298517728|gb|EFI41467.1| foldase protein PrsA [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 331

 Score = 82.4 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/297 (11%), Positives = 92/297 (30%), Gaps = 42/297 (14%)

Query: 44  TTINGEVITDGDISKRIALLKLQ---------------------KINGELEKIAVQELIV 82
            T+NG  +T+ D   + A  + Q                      ++  +++  ++ +I 
Sbjct: 2   ATVNGTDLTEKDYVMQYAAQRNQYVLTAGSEDVLSQPSADNPKKTVDQAIKENTLKNMIQ 61

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
             L KQ+  KS I  D + V+          G           ++        ++     
Sbjct: 62  MELVKQDAAKSNIAVDQSKVDEEIKAIITQMGG-----EEIYKQKLEALGSTPEFYKSYL 116

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
               ++K+ +  K    E      ++         +  +     +   +  N+   +   
Sbjct: 117 TELQLMKSYYETKIKEFEPTDEEIQKYYDKNKDNFFKAKASHILVETVEEANKLKKE--- 173

Query: 203 KDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNP 260
                   +        ++ +       + G        D+  +F +++K       ++P
Sbjct: 174 ------LNKGADFAEMAKENSKDPGSAANGGSLGEFKNGDMVAEFNDVVKILKVGEISDP 227

Query: 261 YVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
             ++ G   + + +K     +      +  +      +    +Y++K++ +A I  Y
Sbjct: 228 VKSKFGYHIVKVDEKSARTLD-----EVKEELKQQLTQAKFTDYIEKMQKDAKISEY 279


>gi|332673018|gb|AEE69835.1| cell binding factor 2 [Helicobacter pylori 83]
          Length = 299

 Score = 82.4 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 81/281 (28%), Gaps = 29/281 (10%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            S+ +  T++G  IT  D    I          +L++   + LI + ++   +E    T 
Sbjct: 40  SSAGVLATVDGRPITKSDFD-MIKQRNPNFDFDKLKEKEKEALIDQAIRTALVENEAKT- 97

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                             + E  +     +      F              + + + K  
Sbjct: 98  -------------ERLDSTPEFKAMMEAVKKQALVEFWAKK----------QAEEVKKVQ 134

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E E+       K+    +         +       +   +   +   +   +  +  N
Sbjct: 135 IPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELAN 194

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDK 275
           +     +  +  + G      ++ + P F +     +  + T  P  T+ G   I +  K
Sbjct: 195 RDTIDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGDYTKTPVKTEFGYHIIYLISK 254

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                      K  +         ++   + +++LR +A I
Sbjct: 255 DSPVTYTYDQAKPTIKGMLQEKLFQERMNQRIEELRKHAKI 295


>gi|149177450|ref|ZP_01856054.1| probable peptidyl-prolyl cis-trans isomerase [Planctomyces maris
           DSM 8797]
 gi|148843783|gb|EDL58142.1| probable peptidyl-prolyl cis-trans isomerase [Planctomyces maris
           DSM 8797]
          Length = 407

 Score = 82.4 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 85/301 (28%), Gaps = 25/301 (8%)

Query: 40  SRIRTTINGEVITDGDI-----------SKRIALLKLQKINGELEKIAVQELIVETLKKQ 88
           S +   +NG  +   DI            +R+   + QK+   L K  ++  I   L   
Sbjct: 93  STVVAMVNGTPLFVSDIIGVYDFQLKQAEQRMPPEEYQKLRRALVKRDLKSHIERQLLIH 152

Query: 89  EIEKSGITFDSNTVNYFFVQ----------HARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
           E++ +        +     +                 S ++    L++QG    + K+  
Sbjct: 153 EMKTTLKKEQLAMLQEHLDKAFDEERIPELQKAVGASSPQELEEKLNQQGRSLYYEKELF 212

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
             Q      +      K      E+ A  +   +        R     I   K   +   
Sbjct: 213 MKQQSALQFMAVKAKSKNDFSREEVLARYKSNLDEYAYPAKARWQRIRISYAKHGGKDKA 272

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL--HPQFQNLLKKSQNN 256
              + +               EK++        G+  +     L        L +     
Sbjct: 273 VGVLDEVIHKLQAGENFGTLAEKYSDGPRAEKKGQWGWTGRGSLADSEVEAALFELPVGQ 332

Query: 257 TTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           T+  + T    + + + D+++        ++A L          K   E + +L   AII
Sbjct: 333 TSQVFETDDSFQIVKVIDRKEAGHTPFADVQAQLEQSMVNDARMKATRETLDQLFKKAII 392

Query: 315 H 315
            
Sbjct: 393 E 393


>gi|317179979|dbj|BAJ57765.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
           F32]
          Length = 299

 Score = 82.4 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 81/281 (28%), Gaps = 29/281 (10%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            S+ +  T++G  IT  D    I          +L++   + LI + ++   +E    T 
Sbjct: 40  SSAGVLATVDGRPITKSDFD-MIKQRNPNFDFDKLKEKEKEALIDQAIRTALVENEAKT- 97

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                             + E  +     +      F              + + + K  
Sbjct: 98  -------------ERLDSTPEFKAMMEAVKKQALVEFWAKK----------QAEEVKKVQ 134

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E E+       K+    +         +       +   +   +   +   +  +  N
Sbjct: 135 IPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELAN 194

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDK 275
           +     +  +  + G      ++ + P F +     +  + T  P  T+ G   I +  K
Sbjct: 195 RDTIDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGDYTKIPVKTEFGYHIIYLISK 254

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                      K  +         ++   + +++LR +A I
Sbjct: 255 DSPVTYTYDQAKPTIKGMLQEKLFQERMNQKIEELRKHAKI 295


>gi|300114008|ref|YP_003760583.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
           watsonii C-113]
 gi|299539945|gb|ADJ28262.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
           watsonii C-113]
          Length = 640

 Score = 82.4 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/401 (8%), Positives = 101/401 (25%), Gaps = 99/401 (24%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + +        +    + I F +  I +Y      + +  ++NGE I+  +     
Sbjct: 1   MLQAIRSRAQGIFAWVIVGLIAIPFTLWGINNYMLDGGEA-VAASVNGEEISTREFQLAF 59

Query: 61  ALLKLQKI-------------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
                Q               +   ++  ++ L+ + L      + G+    + ++    
Sbjct: 60  QNYTQQLRFLMGASFPEEMLDDPATKQNVIEGLVEQRLVLDAAAELGLGMSDSALSQVIR 119

Query: 108 QHARNTGLSAEDFSSFLD-------------------------------------KQGIG 130
            +    G S +  S   +                                     +Q + 
Sbjct: 120 SNEAFQGESGQFDSQRYEAVLSSQGLTPVAYEARLRSALLSEQLASSLRLSAFATQQEVD 179

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL------ 184
                ++   +  +  V   +F         ++                ++         
Sbjct: 180 TIARLRHQKREVAYSIVPSANFHDAIQVSADKVRQYYDDHPEEFRIPEQVKVHYLRLTAA 239

Query: 185 ---------------------------------FSIPDNKLQNQGFVQKRIKDAEESRLR 211
                                              +     Q    V+++ ++  E+ L 
Sbjct: 240 SLATDIPLDEQTLRNFYEESKDQYRVPERRRASHILITIPPQGDEAVRQQAQEKAEAVLE 299

Query: 212 LPKDCNKLEKFASKI-----HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQ 264
             +     E+ A ++          G   +     + P F+  +   +     + P +++
Sbjct: 300 RLQQGEAFEEVAKEVSEDPGSAKKGGDLGFFGRGVMDPAFEKAVFSLEETGVLSEPILSK 359

Query: 265 KGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAE 303
            G   I +      ++    A++  L+ +      E+   E
Sbjct: 360 FGYHIIKLTGIEPGEVKPFEAVREELAQKYRQQIAEEQFYE 400



 Score = 35.8 bits (80), Expect = 7.5,   Method: Composition-based stats.
 Identities = 8/49 (16%), Positives = 18/49 (36%)

Query: 269 YIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
              + +      E   +  L  +      E    +++++L+S A I  Y
Sbjct: 588 VYKVQNGDPSKLEEKARRSLVQEMEQVHGEMVYRDFIQELKSKADIKIY 636


>gi|53719054|ref|YP_108040.1| putative exported isomerase [Burkholderia pseudomallei K96243]
 gi|76809971|ref|YP_333855.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Burkholderia pseudomallei 1710b]
 gi|126452457|ref|YP_001066604.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 1106a]
 gi|167738143|ref|ZP_02410917.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 14]
 gi|167815330|ref|ZP_02447010.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 91]
 gi|167823737|ref|ZP_02455208.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 9]
 gi|167845286|ref|ZP_02470794.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei B7210]
 gi|167910520|ref|ZP_02497611.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 112]
 gi|226197257|ref|ZP_03792834.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei Pakistan 9]
 gi|242315812|ref|ZP_04814828.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 1106b]
 gi|254189167|ref|ZP_04895678.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254198249|ref|ZP_04904671.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei S13]
 gi|254259998|ref|ZP_04951052.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 1710a]
 gi|254297327|ref|ZP_04964780.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 406e]
 gi|52209468|emb|CAH35420.1| putative exported isomerase [Burkholderia pseudomallei K96243]
 gi|76579424|gb|ABA48899.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           pseudomallei 1710b]
 gi|126226099|gb|ABN89639.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 1106a]
 gi|157807500|gb|EDO84670.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 406e]
 gi|157936846|gb|EDO92516.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|169654990|gb|EDS87683.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei S13]
 gi|225930636|gb|EEH26646.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei Pakistan 9]
 gi|242139051|gb|EES25453.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 1106b]
 gi|254218687|gb|EET08071.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
           pseudomallei 1710a]
          Length = 259

 Score = 82.4 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 80/278 (28%), Gaps = 48/278 (17%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKING--ELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I        IA L  Q      +LE+   QEL+   +  QE  K GI    +
Sbjct: 25  IAVVNGTPIPKSRADAMIAQLVQQGQQDTPQLEQAVRQELVNREILMQEAIKRGIPNRPD 84

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q+     +  DF+ K    +
Sbjct: 85  VKAQIV-------------------------------VAQQTAVLRALIEDFLKKNQPSD 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+ A    +             +              +++ KD         K  +  +
Sbjct: 114 TELKARYDDLVKNAGGREYHLHHILVDN----------EQQAKDLIAKIKGGAKFEDLAK 163

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAICDKRD 277
           +++       + G   +       P+F    ++  +   T+ P  TQ G   I + D R 
Sbjct: 164 QYSKDPGSAKNGGDLDWSDPKAYVPEFAAAAQQLQKGQMTDAPVKTQFGWHIIRVDDVRS 223

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +         +  Q     +++    + + LR  A I 
Sbjct: 224 ITP--PPFEQVKQQIAQQMVQQKLQAFEESLRQQAKIQ 259


>gi|315637996|ref|ZP_07893181.1| major antigenic peptide PEB4 [Campylobacter upsaliensis JV21]
 gi|315481844|gb|EFU72463.1| major antigenic peptide PEB4 [Campylobacter upsaliensis JV21]
          Length = 273

 Score = 82.4 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/298 (12%), Positives = 91/298 (30%), Gaps = 33/298 (11%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
                  +++  S ++++    T++GE I+D ++++  A +   +   +L +   + LI 
Sbjct: 4   FSLIAAGLIASVSLSLNAATVATVDGEKISDTEVNEFYAPMLRGQDFKKLPEAQQKALIQ 63

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           + + +  I K     +      +                                 A   
Sbjct: 64  QYVMQDLILKDAKKQNLEKDPMYIKG---------------------------LERAKDE 96

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           +  +V +N  M        ++    +K K   V+   ++     +   +       + + 
Sbjct: 97  LLLNVYQNKIMQDIKVDAAKVKEAYEKNKEQFVKPARVKAKHILVTSEQEAKNIINELKG 156

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-P 260
              +E   +  +      K        + G   +  ES +   F +      +   T  P
Sbjct: 157 LKDKELEKKFTEIART--KSIDTGSAANGGDLGWFDESTMVKPFTDATFSLKKGEITKTP 214

Query: 261 YVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             T  G   I   D R  +       K  +  +    + +K  A   ++L  NA +  
Sbjct: 215 VKTNFGYHIILKQDSRAKEQVAFKDAKMGIENRLKFEEFQKRIALKGQELYKNAKVEI 272


>gi|172060877|ref|YP_001808529.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MC40-6]
 gi|171993394|gb|ACB64313.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MC40-6]
          Length = 260

 Score = 82.4 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 83/278 (29%), Gaps = 47/278 (16%)

Query: 43  RTTINGEVITDGDISKRIALL--KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I        +A L  + Q  + +L++   QEL+   +  QE  + GI    +
Sbjct: 25  IAVVNGTPIPKSRADAMVAQLVQQGQTDSPQLQQAVRQELVNREILMQEAIREGIPNRPD 84

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q++    +   F+ K    +
Sbjct: 85  VKAQV-------------------------------AVAQQTVVLRAMIESFLKKNQPTD 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+ A   ++                + + +       + +            K  +  +
Sbjct: 114 AEVKARYDELVKGAGGNREYHLHHILVDNEQQAKDLIAKIK---------GGAKFEDLAK 164

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAICDKRD 277
           +++       + G   +       P+F    +K  +   T+ P  TQ G   I   D RD
Sbjct: 165 QYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDTPVKTQFGWHIIRADDIRD 224

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +         + AQ     +++    + + LR  A I 
Sbjct: 225 VAP--PPFDQVKAQIAQQIVQQKLQAFEEGLRQQAKIQ 260


>gi|307243271|ref|ZP_07525442.1| PPIC-type PPIASE domain protein [Peptostreptococcus stomatis DSM
           17678]
 gi|306493399|gb|EFM65381.1| PPIC-type PPIASE domain protein [Peptostreptococcus stomatis DSM
           17678]
          Length = 255

 Score = 82.4 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/278 (11%), Positives = 78/278 (28%), Gaps = 46/278 (16%)

Query: 43  RTTINGEVITDGDISKRIA----LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFD 98
              +  +VIT  D+   +A      + Q  N E  K  + ++I + L   +  ++ +  D
Sbjct: 7   LAKVGDKVITQEDLEAAVASLDGYQRQQFDNEEGRKRILADMINQELFYLDAIENKMDQD 66

Query: 99  SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGN 158
              VN                                + +    +    +    +     
Sbjct: 67  EIFVNE------------------------------MELVKANMLKQYAINA-CLAAVEI 95

Query: 159 LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
            + E  A  ++ K+    +         + + +L  +           +   +     + 
Sbjct: 96  TDDEKLAYYEEHKDEFKEDESASAKHILVDNEELALEIEK--------KINKKEVSFEDA 147

Query: 219 LEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRD 277
             +++S     + G         + P+F+  +        ++P  TQ G   I + D+++
Sbjct: 148 AVEYSSCPSKSNGGSLGTFGRGQMVPEFEEAVFTLPVGKVSSPVKTQFGYHLILVDDRKE 207

Query: 278 LG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                    K  +       K  +     +  L     
Sbjct: 208 ARQLEYEDCKKDVEQSLAFKKQNEAFLAKLTDLTEKYK 245


>gi|149199507|ref|ZP_01876542.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lentisphaera
           araneosa HTCC2155]
 gi|149137442|gb|EDM25860.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lentisphaera
           araneosa HTCC2155]
          Length = 308

 Score = 82.4 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 43/311 (13%), Positives = 101/311 (32%), Gaps = 23/311 (7%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDIS-----KRIALLKLQKING------ 70
             +  ++ + S+        I   +NG +IT  DI      + + L ++           
Sbjct: 4   FALITLLCLSSFAGRVYKVSIMAKVNGHIITSYDIQELSYREEMRLRQIFNGPELPSRIV 63

Query: 71  ELEKIAVQELIVETLKKQEI--EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
           +L + A+  LI E L         +     S          AR  G   + F   L ++ 
Sbjct: 64  DLRRRALDILIEEQLILDHFNSNDAYQVPSSLLEERIEKSIARRFGSDRDKFYDMLHQKD 123

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
           +    +++ +    I   +       K      +I     + K        +   L  + 
Sbjct: 124 MTVEEYREEIERGIILELMRMEFIRKKIVVTPHDIALYFAENKAEFATPSQMHIKLIILS 183

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
            +K +    V K  ++ ++ +           +F         G   +L  +D+ P F  
Sbjct: 184 KDKSKYDERVTKLKQELKDGKSFDELMPQSDSQF--------NGDLGFLKMTDIRPDFLE 235

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
            LK  +            + ++ + + R   +     +   + ++ +  + +++  E++ 
Sbjct: 236 ALKDKKAGEYITIEETTQMLFVQLSEVRKSAVPPLEDISDQIKSKLSSDQEKQYREEFIG 295

Query: 307 KLRSNAIIHYY 317
            L+  A I  Y
Sbjct: 296 DLKRGAKIEKY 306


>gi|296272150|ref|YP_003654781.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Arcobacter
           nitrofigilis DSM 7299]
 gi|296096325|gb|ADG92275.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Arcobacter
           nitrofigilis DSM 7299]
          Length = 269

 Score = 82.4 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 96/298 (32%), Gaps = 42/298 (14%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK--RIALLKLQKINGELEKIAVQEL 80
           I+  +       +   ++    ++NGE +T  D+++  R   ++ + +  E +   + +L
Sbjct: 5   ILSIVTAFALTATTLSAAETFASVNGEDVTSQDVAQLLRGQNVQFENLPKETKDKVISQL 64

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I + L  Q+  KSGI  +    +                                  +  
Sbjct: 65  IEKKLLTQKAVKSGIEKEEKYKDAL------------------------------SKIKE 94

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
                  ++N++  K    + E  +   K K        +      +   K  N    + 
Sbjct: 95  DLALELWMQNEY-AKVKATDAEEKSFYDKNKEKFKTPDTLEASHILVKTEKEANDIIAKL 153

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTT- 258
                  ++ +        +KF+        G         + P+F +  L   +   T 
Sbjct: 154 -----NIAKNKKGSFEELAKKFSIGPTKTKGGYLGKFQAKQMVPEFSKAALALKKGEYTK 208

Query: 259 NPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            P  TQ G   I + +K    +     +KA ++      K  K   E V+KL+ +A I
Sbjct: 209 KPVKTQFGYHVIYLENKEVSQILPFDKVKANIAKMIVQEKYGKMIKEEVEKLKKDAKI 266


>gi|229028936|ref|ZP_04185035.1| Foldase protein prsA 2 [Bacillus cereus AH1271]
 gi|228732216|gb|EEL83099.1| Foldase protein prsA 2 [Bacillus cereus AH1271]
          Length = 285

 Score = 82.4 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/304 (10%), Positives = 79/304 (25%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + +++      SS    T     IT GD  K++             K  
Sbjct: 4   KHIFIITALISILMLAACGQKNSSATVATATDSTITKGDFEKQLK--------DRYGKDM 55

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           + E++ + +  ++ + S    D                   +    F           + 
Sbjct: 56  LYEMMAQDVITKKYKVSDDDVDREVQ-----------KAKKQYGDQFTAVLENNRLKDEA 104

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 105 DFKNQIKFKLAMNEAIKKSVTEKDVKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ ++            ++ +  +      G   Y     + P+F+    K + 
Sbjct: 145 SDENEAKEIKKKLDAGASFEELAKQESQDLLSKDKGGDLGYFHSGTMTPEFETAAYKLNI 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
           +  + P  +  G   I +  K+DL     +K  +       +I       + ++K    A
Sbjct: 205 DQISEPVKSPNGYHIIKLTGKKDLQPYDEVKGSIRKNLEAERIADPTFSHKLLQKELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|307636864|gb|ADN79314.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
           908]
 gi|325995453|gb|ADZ50858.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
           2018]
 gi|325997051|gb|ADZ49259.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
           2017]
          Length = 299

 Score = 82.4 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 81/281 (28%), Gaps = 29/281 (10%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            S+ +  T++G  IT  D    I          +L++   + LI + ++   +E      
Sbjct: 40  ASAGVLATVDGRPITKSDFD-MIKQRNPNFDFDKLKEKEKEALIEQAIRTALVENEA--- 95

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                       A     + E  +     +      F              + + + K  
Sbjct: 96  -----------KAEKLNQTPEFKAMMEAVKKQALVEFWAKK----------QAEEVKKIQ 134

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E E+       K+    +         +       +   +   +   +   +  +  N
Sbjct: 135 IPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEIDKQPKTKKEAKFIELAN 194

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDK 275
           +     +  +  + G      ++ + P F +     +  N T  P  T+ G   I +  K
Sbjct: 195 RDTIDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGNYTKTPVKTEFGYHIIYLISK 254

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                      K  +         ++   + +++LR +A I
Sbjct: 255 DSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEELRKHAKI 295


>gi|223939125|ref|ZP_03631008.1| hypothetical protein Cflav_PD1553 [bacterium Ellin514]
 gi|223892174|gb|EEF58652.1| hypothetical protein Cflav_PD1553 [bacterium Ellin514]
          Length = 329

 Score = 82.4 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/328 (11%), Positives = 95/328 (28%), Gaps = 49/328 (14%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAM--SSRIRTTINGEVITDGDISKRIALL 63
            +S            ++ +  ++P+ +  S  +  +S +   +    IT  D  + +   
Sbjct: 3   MSSQRIIANRCRVAVIISLLAMLPLFAGCSKKVVVNSPVLAKVGSREITTADFEQEVQWR 62

Query: 64  KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
              + +   ++  +QE+I+  L  Q+ + +G+  D+     +          +       
Sbjct: 63  IKTQRSLPDKQALLQEMILHELNLQKAKVAGLENDAEVRRTYEDVLVARVKETQLTSR-- 120

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                                        +        EI A   +      R    +  
Sbjct: 121 -----------------------------LEAVKVSADEIRAAYDRDIAKYTRPAKAKLA 151

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK-------LEKFASK-IHDVSIGKAQ 235
           L  I  N   +   + +      E++ +                 F+         G   
Sbjct: 152 LIYIKANSKLSAEKIAELEGRMHEAQKQAHTLATATPGFGRIAVDFSDDQPSRYQGGDVG 211

Query: 236 YLLESDLHPQF------QNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAY 287
           +  E  +  ++           K++   ++   T  G   +   D RD  +      +A 
Sbjct: 212 WYDEGLVEYRWPKEVVAAGFALKAKGEISDVIKTADGFYLVMKLDLRDQVITPLEQAQAS 271

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +  +    K  + E  +V+++R+ A + 
Sbjct: 272 IERRLLSEKRRQLEETFVREMRAFAPVQ 299


>gi|317050625|ref|YP_004111741.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurispirillum
           indicum S5]
 gi|316945709|gb|ADU65185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurispirillum
           indicum S5]
          Length = 280

 Score = 82.4 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/306 (9%), Positives = 81/306 (26%), Gaps = 50/306 (16%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI---- 68
           +K +T    L     +  ++  + A S  +  T+    IT  D+++ I  L  +      
Sbjct: 1   MKKMTLRLCLAAGLTLGTLAGVALA-SDTVLATVEKRQITQQDLNRAIQSLPDELRAQVR 59

Query: 69  -NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
            N E +   + EL+ + +   E ++     +    N                        
Sbjct: 60  SNPEFKAQLLDELVRQEMVYHEAQRQNFQENEVVRNRL---------------------- 97

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
                   + L  + +    ++          E ++    ++ K   V +  +       
Sbjct: 98  --------KLLERELMINAFLEEYLSRNVSVSEQDLKEFYERNKARFVTQATVAASHIL- 148

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESD-LHPQ 245
                      +++ ++                + +         G          L  +
Sbjct: 149 --------LEDEQKAREVLRRARAGENFGQLAREHSLDPGSARQEGFIGEFYRGQGLVKE 200

Query: 246 FQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEA 302
           F++               T+ G   I + +K           +  ++      K  +   
Sbjct: 201 FEDAAFAAEVGVHPELVRTEFGYHIIKVHEKNPSRTVSLDEARDRVTEIIAEEKQNQALM 260

Query: 303 EYVKKL 308
             +++L
Sbjct: 261 RLIQEL 266


>gi|108562596|ref|YP_626912.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori HPAG1]
 gi|107836369|gb|ABF84238.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori HPAG1]
          Length = 299

 Score = 82.4 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/284 (10%), Positives = 78/284 (27%), Gaps = 29/284 (10%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSG 94
           +   S+ +  T++G  IT  D    I          +L++   + LI + +         
Sbjct: 37  ATDSSAGVLATVDGRPITKSDFD-MIKQRNPNFDFDKLKEKEKEALIEQAI-------RT 88

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
              ++               +        L +                      + + + 
Sbjct: 89  ALVENEAKTEKLDSTPEFKAMMEAVKKQALVEFWAKK-----------------QAEEVK 131

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
           K    E E+       K+    +         +       +   +   +   +   +  +
Sbjct: 132 KVQIPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIE 191

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAI 272
             N+     +  +  + G      ++ + P F +     +  + T  P  T+ G   I +
Sbjct: 192 LANRDTIDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGDYTKTPVKTEFGYHIIYL 251

Query: 273 CDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             K           K  +         ++   + +++LR +A I
Sbjct: 252 ISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEELRKHAKI 295


>gi|309787033|ref|ZP_07681645.1| PPIC-type PPIASE domain protein [Shigella dysenteriae 1617]
 gi|308924611|gb|EFP70106.1| PPIC-type PPIASE domain protein [Shigella dysenteriae 1617]
          Length = 611

 Score = 82.4 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/384 (9%), Positives = 98/384 (25%), Gaps = 85/384 (22%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-- 70
           +  +    +++ F +  +  Y     ++     +N + I+ G         + +      
Sbjct: 1   MLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAFNSERNRMQQQLG 59

Query: 71  --------------ELEKIAVQELIVETLKKQEIEK-----------------SGITFDS 99
                          L +  +  LI E L  Q   +                      D 
Sbjct: 60  DQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQAIFATPAFQVDG 119

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN--------HFKQYLAIQSIWPDVVKND 151
              N  +       G++A+ ++  L  Q              F        +   V +  
Sbjct: 120 KFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVAQQR 179

Query: 152 FMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
            + +               E EI +  ++ KN  +     R     +    +Q       
Sbjct: 180 VVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLDAATMQQPVSDAD 239

Query: 201 RIKDAEE-----------------------------SRLRLPKDCNKLEKFASKI-HDVS 230
                ++                                +        ++ ++ I    +
Sbjct: 240 IQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIISARN 299

Query: 231 IGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYL 288
            G   +L ++ +  + +N   K +   +    +  G   + + D +    +    ++  +
Sbjct: 300 GGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAKVKSLDEVRDDI 359

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNA 312
           +A+    K         +K+   A
Sbjct: 360 AAKVRHEKALDAYYALQQKVSDAA 383


>gi|34557645|ref|NP_907460.1| cell binding factor 2 precursor major antigen PEB4A [Wolinella
           succinogenes DSM 1740]
 gi|34483362|emb|CAE10360.1| CELL BINDING FACTOR 2 PRECURSOR MAJOR ANTIGEN PEB4A [Wolinella
           succinogenes]
          Length = 271

 Score = 82.4 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 99/301 (32%), Gaps = 42/301 (13%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDIS---KRIALLKLQKINGELEKIAVQE 79
           +I  +  I+     ++S++   +++G+ ITD DIS   + +  +   ++  +++K  +++
Sbjct: 5   LISSVAAILLLSGLSLSAKTLASVDGDEITDKDISVMLRAMPGVSYDQLPEDMQKKVLEQ 64

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
            I   L  ++ +  GI       +                                   A
Sbjct: 65  AIERKLLAKQAKSEGIQNSKEFKDAL-------------------------------EDA 93

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
            + +  +V     M      E ++     + K   V+  L++     + + K   +   +
Sbjct: 94  KEDLTLEVWMRQQMNNAKVSEGDMRKFYDENKEKFVQPELVKAKHILVQNEKEAKEVIAE 153

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT 258
                 +       K     +  +      + G+  +  +  + P+F N      + + +
Sbjct: 154 ----IGKAGAKASEKFSELAKSKSIDPAGQNGGELGWFSKDQMVPEFANAAFALQKGSYS 209

Query: 259 N-PYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             P  TQ G   I   DK+         +K  +       K     +   KKLR  A + 
Sbjct: 210 KTPVKTQFGYHVIYAEDKKAQAVLPYEDVKPQIEQNLKIQKFRDSVSSTAKKLREKAQVT 269

Query: 316 Y 316
           +
Sbjct: 270 F 270


>gi|227358098|ref|ZP_03842440.1| peptidyl-prolyl cis-trans isomerase D [Proteus mirabilis ATCC
           29906]
 gi|227161833|gb|EEI46865.1| peptidyl-prolyl cis-trans isomerase D [Proteus mirabilis ATCC
           29906]
          Length = 625

 Score = 82.4 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/398 (9%), Positives = 104/398 (26%), Gaps = 87/398 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + ++ ++    +    +++ F +  +  Y   +  +     +NG  I+   + +  
Sbjct: 1   MMDNIRSTANNPFIKILLAVIILSFVLTGVGGYLFSSGVND-AAEVNGYKISRAQLEQAY 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + Q                     + + A+  LI + L  Q  ++ GI+     +  
Sbjct: 60  QQRRAQLQKDMGDNFASLASSDEGQKMIRQQALNVLINQALLDQFAQELGISAGDQQIRD 119

Query: 105 FFV---QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
                     +     + +   L    I  + F + +    I   +  +           
Sbjct: 120 AIFALPYFQTDGKFDNKKYVELLTANNIDADAFAEGIRQNLINQQLRYSIQGTDFALESE 179

Query: 152 -----------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                  F+ K    + E+ A   +  ++ +    ++     + 
Sbjct: 180 VKDFAGLMLQSRNVRLASLDIQPFLEKETVSDEELKAFYDQNTSMFIAPAQVKVSYIQLE 239

Query: 189 DNKLQNQGFV-------------------------------QKRIKDAEESRLRLPKDCN 217
             K  +   +                               +   K+AE++         
Sbjct: 240 AQKDLSNITISDDEVKAYYDSNISEFTVPGQKKYSLLVLADETAAKEAEDALKNGADFVT 299

Query: 218 KLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
            +++ +         G   ++      P+  N     +   + P     G     + D +
Sbjct: 300 LVKEKSIDTFSAKQNGSLGWITIGQELPELANASLTEKGQISQPVKISNGYAIFRLDDMK 359

Query: 277 D--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
              +     +KA L  +    K         +K+   A
Sbjct: 360 PSVVKPFDDIKADLLVKMRENKAIDDFFALQQKVSQAA 397



 Score = 36.6 bits (82), Expect = 5.2,   Method: Composition-based stats.
 Identities = 7/49 (14%), Positives = 14/49 (28%)

Query: 269 YIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            I +    D         +++        E+     +  LR  A I  +
Sbjct: 572 LIQLDSVTDGKPTAEQLEFMTNLYRAQMGEEALQLMLSDLREKAKIEIF 620


>gi|292487473|ref|YP_003530345.1| putative protease maturation protein [Erwinia amylovora CFBP1430]
 gi|292898715|ref|YP_003538084.1| peptidyl-prolyl cis-trans isomerase D [Erwinia amylovora ATCC
           49946]
 gi|291198563|emb|CBJ45671.1| peptidyl-prolyl cis-trans isomerase D [Erwinia amylovora ATCC
           49946]
 gi|291552892|emb|CBA19937.1| putative protease maturation protein [Erwinia amylovora CFBP1430]
          Length = 623

 Score = 82.4 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/396 (8%), Positives = 100/396 (25%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + +     +    +++ F +  +  Y +          +NG+ I+     +  
Sbjct: 1   MMDNLRAASNHVALKIILGLIILSFVLTGVGGYLTGGSGDY-AAKVNGQEISRAQFERAF 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           +  + ++                   ++ + A+ +LI E L  Q  +  G+T   + +  
Sbjct: 60  SSERARQQQMLGEQFSVLAGNDGYMQQMRQQALSQLIDEMLLTQYAKDIGLTISDDQIKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                             + S ++  G   + + + L  Q     +++            
Sbjct: 120 AIFTQPAFQTAGKFDNAKYISIINNMGFTADQYAEALRKQLTTQQLIESVTGTDFVLGNE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                N    K    + EI    Q+ ++  +     R     + 
Sbjct: 180 ADSLAALVAQQRLVREVTINVNALAAKQNVTQEEIANYYQQHQSSLMSSEQFRVSYIKMD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            E+                                +        
Sbjct: 240 AATMQQPVSESDIQSWYEKHQGDYTQPQRNRYSIIQTKTEAEARSVLDVLKKGGDFARLA 299

Query: 220 EKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++      + G   +L       + +    K +   +    +  G     + D +  
Sbjct: 300 KEKSADPISARNGGDMGWLEPETTPDELKRAALKEKGQLSGVITSSVGFIVARLDDTQPE 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    +   ++ +    K      +  +K+   A
Sbjct: 360 KVKALSEVHDDIANKLKQEKAVVAFYKLQQKVSDAA 395


>gi|315924379|ref|ZP_07920601.1| peptidyl-prolyl cis-trans isomerase [Pseudoramibacter alactolyticus
           ATCC 23263]
 gi|315622258|gb|EFV02217.1| peptidyl-prolyl cis-trans isomerase [Pseudoramibacter alactolyticus
           ATCC 23263]
          Length = 266

 Score = 82.4 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/289 (11%), Positives = 81/289 (28%), Gaps = 48/289 (16%)

Query: 37  AMSSRIRTTINGEVITDGD----ISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEK 92
           +   ++  T+ G+ IT       I +     ++Q    E  +  + E+I + L   + + 
Sbjct: 13  SEKDQVLATVEGKEITQSQLDLLIEQAPQDQQMQFRTHEGRRQLLNEMIAQELFYLKGK- 71

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
                                             +   +   +     +      + + F
Sbjct: 72  ------------------------------AEKIEETEEYQKEFAEMTEKFLKSYMISHF 101

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
           M      E E+     + ++  +    +R     +P          Q+ I   EE     
Sbjct: 102 MSSVKVEEDELRQYYNENQDKFIAPDSVRCSHILVP--------AKQQAIDIIEEIDTGG 153

Query: 213 PKDCNKLEKFASKIHDVS-IGKAQYLLESDLHPQFQNLLKKSQNN--TTNPYVTQKGVEY 269
                  + +++   +    G   Y  +  +  +F+           T+ P  TQ G   
Sbjct: 154 KTFEQAAKAYSADASNKDRGGDLGYFHKGQMVAEFEMAAFSLNPGEMTSAPVQTQFGWHI 213

Query: 270 IAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           I   D +  ++    A +  L       K  +      + L+    ++ 
Sbjct: 214 IQCTDHKTNEIVPYEAARDSLHRFLLGQKQNRRYVAEAEDLKKQYHVNI 262


>gi|254470940|ref|ZP_05084343.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudovibrio sp.
           JE062]
 gi|211960082|gb|EEA95279.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudovibrio sp.
           JE062]
          Length = 295

 Score = 82.4 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/278 (11%), Positives = 83/278 (29%), Gaps = 37/278 (13%)

Query: 44  TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
             +NG  I++ DI         +     ++  A   ++ E L +Q    + I       +
Sbjct: 36  VVVNGVQISEQDILAEAQNHPAENPGQAVQAAARALVVRELLLQQARALNIIAAPEQHED 95

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
                                                 +   ++++ +  +   + +  +
Sbjct: 96  GS-------------------------------ETEEDAAIRELIEQEVDIPSASQDECL 124

Query: 164 PANKQKM-KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL-RLPKDCNKLEK 221
              +    +  +   Y    +LF+   ++L  +   + R  D  +    +     +   +
Sbjct: 125 RYYENNKSRFSSEPIYEASHILFAAGPDQLTARSIAKARAHDVIKLLQDKPETFADLAME 184

Query: 222 FASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTN-PYVTQKGVEYIAICDKRDLG 279
           +++     + G    L +    P+F+           +  P  T+ G   I +  K D  
Sbjct: 185 YSACPSKETGGNLGQLTKGSTVPEFEVALQSMQAGQLSEHPIETKFGYHIIFLNRKIDGN 244

Query: 280 --GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                 ++  + A        K  ++Y+  L  +A I 
Sbjct: 245 TLPFEHVEETIRAWLEAASWSKAVSQYITILAGSAEIK 282


>gi|167644889|ref|YP_001682552.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter sp. K31]
 gi|167347319|gb|ABZ70054.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter sp. K31]
          Length = 330

 Score = 82.4 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 29/291 (9%), Positives = 73/291 (25%), Gaps = 55/291 (18%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE------KIAVQELIVETLKKQ 88
                      ++G  +   D+ +      L      L+      +  + E++ + L   
Sbjct: 33  PPEPGDTAVARVDGHTVWASDVKREAVAQGLISEGEPLDIGSDLFRQRLDEVVDQKLLAA 92

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
           E  K  +  D                                          + +   +V
Sbjct: 93  EALKQKLDKDPVAQRRL------------------------------AAARERILGDMLV 122

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
           +N          +     +Q+  +    E   R +L +   +    +  +          
Sbjct: 123 ENVVEKAVNENAIRGLYAEQQKLSKRSEEIRARQILVASQADGEAVKKLLAA-------- 174

Query: 209 RLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKG 266
                       + ++      + G   Y     +   +        +     P+ T+ G
Sbjct: 175 ---GASFDALAMERSTDPATRFNGGDLGYFTVDVMPAAYAVALKDAQKGALVGPFQTEGG 231

Query: 267 VEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
              + + DKR  +     A +  +    T  +      + ++KLR  A + 
Sbjct: 232 WAVLRVEDKRLEEPITLEAARPQIVRFLTYDQ----VRDLLEKLRGAAKVE 278


>gi|261839036|gb|ACX98801.1| Protein maturation protease (Peptidylprolyl isomerase)
           [Helicobacter pylori 52]
 gi|317181484|dbj|BAJ59268.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
           F57]
          Length = 299

 Score = 82.4 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/281 (10%), Positives = 77/281 (27%), Gaps = 29/281 (10%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            S+ +  T++G  IT  D    I          +L++   + LI + +            
Sbjct: 40  SSAGVLATVDGRPITKSDFD-MIKQRNPNFDFDKLKEKEKEALIDQAI-------RTALV 91

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
           ++               +        L +                      + + + K  
Sbjct: 92  ENEAKTEKLDSTPEFKAMMEAVKKQALVEFWAKK-----------------QAEEVKKIQ 134

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E E+       K+    +         +       +   +   +   +   +  +  N
Sbjct: 135 IPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELAN 194

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDK 275
           +     +  +  + G      ++ + P F +     +  + T  P  T+ G   I +  K
Sbjct: 195 RDTIDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGDYTKTPVKTEFGYHIIYLISK 254

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                      K  +         ++   + +++LR +A I
Sbjct: 255 DSPVTYTYDQAKPTIKGMLQEKLFQERMNQKIEELRKHAKI 295


>gi|218289330|ref|ZP_03493564.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240436|gb|EED07617.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 314

 Score = 82.4 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 29/314 (9%), Positives = 79/314 (25%), Gaps = 30/314 (9%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING 70
            +I          +          +      +   +    IT  +++++           
Sbjct: 5   RWISGFVGAAAGALVVGGVWFGTYAAHGGGSVVAMVGRTPITRQELAQQSEAYAGS---- 60

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE-DFSSFLDKQGI 129
                 ++ELI   L +Q   K  IT     +N          G++++   +S L +  +
Sbjct: 61  ----AMLEELIANALIEQAAAKQHITATDAEINQQLTAIEMQNGITSDVQLNSLLAQNHM 116

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
               F   +    +   + +          + +I +  ++  ++       +  +  +  
Sbjct: 117 TKAQFLDQIRDNILASKLAEAQVH----VTDKQIESYYKQNASMFTVPETRKIAVIEVKT 172

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDL----HP 244
                +   +                 +  +  +         G      E +L      
Sbjct: 173 KADAEKALAE---------IQSGTPFASVAKSVSIDAATRSEGGLLGTFSEDELKAGDPA 223

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEA 302
                        + P   Q G E +         +    A+++ +              
Sbjct: 224 IASTAFALQAGAVSQPVKVQGGYEIVQCQAITPQHVQPLSAVRSEIIQDIKQQNAASETK 283

Query: 303 EYVKKLRSNAIIHY 316
             V +L  +A I  
Sbjct: 284 -LVAQLAKSADIRI 296


>gi|167893828|ref|ZP_02481230.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           pseudomallei 7894]
 gi|167918548|ref|ZP_02505639.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           pseudomallei BCC215]
          Length = 259

 Score = 82.4 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 80/278 (28%), Gaps = 48/278 (17%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKING--ELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I        IA L  Q      +LE+   QEL+   +  QE  K GI    +
Sbjct: 25  IAVVNGTPIPKSRADAMIAQLVQQGQQDTPQLEQAVRQELVNREILMQEAIKRGIPNRPD 84

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q+     +  DF+ K    +
Sbjct: 85  VKAQIV-------------------------------VAQQTAVLRALIEDFLKKNQPSD 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+ A    +             +              +++ KD         K  +  +
Sbjct: 114 TELKARYDDLVKNAGGREYHLHHILVDN----------EQQAKDLIAKIKGGAKFEDLAK 163

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAICDKRD 277
           +++       + G   +       P+F    ++  +   T+ P  TQ G   I + D R 
Sbjct: 164 QYSKDPGSAKNGGDLDWSDPKAYVPEFAAAAQQLQKGQMTDTPVKTQFGWHIIRVDDVRS 223

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +         +  Q     +++    + + LR  A I 
Sbjct: 224 ITP--PPFEQVKQQIAQQMVQQKLQAFEESLRQQAKIQ 259


>gi|332293065|ref|YP_004431674.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332171151|gb|AEE20406.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 483

 Score = 82.4 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/288 (10%), Positives = 82/288 (28%), Gaps = 22/288 (7%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKL--QKINGELEKIAVQELIVETLKKQEIEKSGITF 97
             +   +   +I + DI + +  +K   Q          +  L+   L   +  +  I  
Sbjct: 61  DGVAGVVGDYLILESDIDQSLIEIKQRGQASADITSCQVLGSLLENKLLTHQAVQDSIVV 120

Query: 98  D----SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
                ++ V+    + A   G   +    +  +           +   +I  D +    +
Sbjct: 121 QDSRVNSEVDQMVQRFASQLGSEQKVVEFYRKESMADLRAELFSIRKNNILSDRMNQKIV 180

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                   EI     ++    +  + +   +  I       +   QK I   +  R  + 
Sbjct: 181 ESVDVTPDEIKTFFNRIPADELPTFGVELEIARIVIEPKATEEERQKVIDRLKGFRRDIL 240

Query: 214 KDCNKLEKFA-----SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGV 267
           ++ +     A             G      ++ L  +F+++         + P+ T+ G 
Sbjct: 241 ENGSSFATKAVLYTDDGASRPDGGLMVIDRKTPLVKEFRDVAFSLQDGEISEPFETEFGF 300

Query: 268 EYIAICDKRDLGGEIALKAYLSAQN----TPTKIEKHEAEYVKKLRSN 311
             + +   +        +  +             E+   + V K+R  
Sbjct: 301 HIVTVEKTKGE------RKDIRHILLVPEIKEAQEEEAKDLVNKVRKR 342


>gi|256841005|ref|ZP_05546512.1| peptidyl-prolyl cis-trans isomerase [Parabacteroides sp. D13]
 gi|256736848|gb|EEU50175.1| peptidyl-prolyl cis-trans isomerase [Parabacteroides sp. D13]
          Length = 454

 Score = 82.0 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/274 (9%), Positives = 81/274 (29%), Gaps = 12/274 (4%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ--KINGEL 72
           ++     +        +      +   I   +  + I   DI  +    + +  +++G+ 
Sbjct: 1   MMKKILSVFFLACCSCIVMAQDNVIDEIVWVVGDDAILRSDIETQRLYNQNEGVRLDGDP 60

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
             +  +++ ++ L   + +   IT + N V     Q                +  G   +
Sbjct: 61  YCVIPEQMAIQKLYLNQAKIDSITVNENQVIQSVDQWMNMAVNQIGSREKLEEYFGKKFS 120

Query: 133 HFKQYLA---IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS--- 186
             K        +      +++  + +      E+     ++   ++        +     
Sbjct: 121 QIKDERKEMVREQQVVQQMQHQLIGEIKLTPSEVRKYFSQLSQDSLPNIPTTVEVQIVTL 180

Query: 187 -IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHP 244
                  +      +     E+      +       ++         G+  ++ ++ L P
Sbjct: 181 EPKIPFEETDAIKARLRDFTEQVNSGKMEFSTLARLYSEDPGSASRGGELGFMSKTQLLP 240

Query: 245 QFQNLLKKSQN--NTTNPYVTQKGVEYIAICDKR 276
           +F N+    ++    +    T+ G   I + +KR
Sbjct: 241 EFANVAFNLKDPKRVSQIVQTEYGYHIIQLIEKR 274


>gi|99080787|ref|YP_612941.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ruegeria sp. TM1040]
 gi|99037067|gb|ABF63679.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ruegeria sp. TM1040]
          Length = 424

 Score = 82.0 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 96/248 (38%), Gaps = 7/248 (2%)

Query: 43  RTTINGEVITDGDISKRIALLKLQ-KINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
             T+N +VIT  ++ +R   L +   + G+  + A  +LI + LK+Q ++  G+T     
Sbjct: 48  AITVNEDVITTYELEQRALFLSVLGSVQGDPFETARDDLIEDRLKRQVMKDVGLTLSEEE 107

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
           V     + A+   L+ E+F + L++ G+     + +      W + V+  F+ +    E 
Sbjct: 108 VTEGMRELAQRANLTLEEFLASLNQAGVAPETVRDFTTAGLGWREYVRGRFLSQARPSEA 167

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           EI        + +V+  L   +L        Q      + +        R         +
Sbjct: 168 EIDRAMGTAGSGSVQVLLSEIILPL-----TQENAAQVQDLAIQISELTRAEAFAASAAQ 222

Query: 222 FASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           F++       G+  ++  S L PQ Q ++        T P   Q  +    +   R++ G
Sbjct: 223 FSAADSRTDGGRLPWMSLSRLPPQLQEVVLGLEPGEITQPLPMQGAIAIFRMRGLREVDG 282

Query: 281 EIALKAYL 288
             A  A +
Sbjct: 283 RSATYAAI 290



 Score = 38.9 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/87 (10%), Positives = 33/87 (37%), Gaps = 5/87 (5%)

Query: 235 QYLLESDLHPQFQ-NLLKKSQNNTTNPYVTQKG--VEYIAICDK--RDLGGEIALKAYLS 289
                  +       L +  +N ++       G  + ++ +C +    +  +   +  ++
Sbjct: 337 GSEAPGAIPQDIALELSRFDENESSATLTRDNGQTLLFVMLCGRTSEVVASQENARVAVA 396

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                 ++ +    +V++L++NA I +
Sbjct: 397 NALVQQRLNELAEAHVEQLKANARIDF 423


>gi|315607432|ref|ZP_07882428.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae ATCC 33574]
 gi|315250864|gb|EFU30857.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae ATCC 33574]
          Length = 474

 Score = 82.0 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/302 (11%), Positives = 90/302 (29%), Gaps = 40/302 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           + T  +L+   +   ++Y   A +  +  T+NG  ++  +              G ++K 
Sbjct: 1   MKTATLLVAMLLCGSMAY---AQNDPVVMTVNGAPVSRSEFEYSYN---KNNSEGVIDKK 54

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            V E +   +                          N  L  +                 
Sbjct: 55  TVGEYVDLFV--------------------------NYKLKVQAALDARLDTMSSFKKEF 88

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    Q + P +V             +I    Q+  +          +L  +  N  + Q
Sbjct: 89  REYRDQQVRPTLVT---DADVEAKARDIYRETQQRVDGGGGLLKTSHILLLLDQNATKTQ 145

Query: 196 GFVQK-RIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK- 252
               K RI     +  +     +   + +      V+ G+  ++  + L   ++++    
Sbjct: 146 QNAAKVRIDSVYNALKKGADFADLARRLSDDKSSAVNGGQLPWIERNQLVKAYEDVAYAL 205

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
            +   + P++++ G   + + DK+      ++K  +        +         +L+  A
Sbjct: 206 KKGEISKPFLSEYGYHVVKLDDKQPFFPYDSVKTSIYQFIESRGLRDAIVT--DRLQEEA 263

Query: 313 II 314
            +
Sbjct: 264 KV 265


>gi|303236822|ref|ZP_07323401.1| PPIC-type PPIASE domain protein [Prevotella disiens FB035-09AN]
 gi|302482990|gb|EFL46006.1| PPIC-type PPIASE domain protein [Prevotella disiens FB035-09AN]
          Length = 477

 Score = 82.0 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 29/259 (11%), Positives = 68/259 (26%), Gaps = 14/259 (5%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKL--QKINGELEKIAVQELIVETLKKQE 89
           S  +  +  ++   +  E I   D+       +    K  G      ++++ V+ L   +
Sbjct: 43  SETADNVVDQVLWVVGDEPILKSDLEMMRLQGEADGMKWKGNPNCAILEQIAVQKLFLHQ 102

Query: 90  IEKSGITFDSNTVNYFFVQHARNTG--LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
                I      +     Q                  + Q       +Q L        +
Sbjct: 103 AALDSINVTEAEITQGVEQQINAWIAIPQIGSKEKLEEYQHKSIAQIRQDLHDDFKNRQL 162

Query: 148 VKN---DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
           V+      +        E+    +K+   ++        +  I          +++    
Sbjct: 163 VQRMQEKLVGDVKVSPAEVREYFKKLPVDSIPMIPTTVEVQLITQTPRIEPTEIERIKNQ 222

Query: 205 AEESRLRLPKDCNKLEKFASKIH-----DVSIGKAQYLLESDLHPQFQNLLKKSQN--NT 257
             +   R+ K     E  A             G+  ++    L P F        +    
Sbjct: 223 LRDYTDRVVKGETSFETLARLYSEDPGSARQGGELGFMGRGMLDPTFAAAAFNLTDPKKV 282

Query: 258 TNPYVTQKGVEYIAICDKR 276
           +    ++ G   I + D+R
Sbjct: 283 SKVVESEFGYHIIQLIDRR 301


>gi|312171578|emb|CBX79836.1| putative protease maturation protein [Erwinia amylovora ATCC
           BAA-2158]
          Length = 623

 Score = 82.0 bits (200), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/396 (8%), Positives = 99/396 (25%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + +     +    +++ F +  +  Y +          +NG+ I+     +  
Sbjct: 1   MMDNLRAASNHVALKIILGLIILSFVLTGVGGYLTGGSGDY-AAKVNGQEISRAQFERAF 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           +  + ++                   ++ + A+ +LI E L  Q  +  G+T   + +  
Sbjct: 60  SSERARQQQMLGEQFSVLAGNDGYMQQMRQQALSQLIDEMLLTQYAKDIGLTISDDQIKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                             +   ++  G   + + + L  Q     +++            
Sbjct: 120 AIFTQPAFQTAGKFDNAKYIIIINNMGFTADQYAEALRKQLTTQQLIESVTGTDFVLGNE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                N    K    + EI    Q+ ++  +     R     + 
Sbjct: 180 ADSLAALVAQQRLVREVTINVNALAAKQNVTQEEIANYYQQHQSSLMSSEQFRVSYIKMD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            E+                                +        
Sbjct: 240 AATMQQPVSESDIQSWYEKHQGDYTQPQRNRYSIIQTKTEAEARSVLDVLKKGGDFARLA 299

Query: 220 EKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++      + G   +L       + +    K +   +    +  G     + D +  
Sbjct: 300 KEKSADPISARNGGDMGWLEPETTPDELKRAALKEKGQLSGVITSSVGFIVARLDDTQPE 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    +   ++ +    K      +  +K+   A
Sbjct: 360 KVKALSEVHDDIANKLKQEKAVVAFYKLQQKVSDAA 395


>gi|295111546|emb|CBL28296.1| SurA N-terminal domain. [Synergistetes bacterium SGP1]
          Length = 368

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/336 (11%), Positives = 99/336 (29%), Gaps = 26/336 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIV-------PIVSYKSWAMSSRIRTTINGEVITD 53
           M   + T +   +  +   F+L  F +                 M+      ++G  +  
Sbjct: 1   MLKNLRTHMKWIMITIVVAFLLSTFLMYEGRSGRRGPSRSADGTMTDYEVAAVDGRPLMR 60

Query: 54  GDISKRIALLKLQKINGE--------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
            ++  R+                   + +  + + ++E   + E++K+ I          
Sbjct: 61  SELENRLRAYLENSGLRNAASLDLPAVYQAVLDQYVLERQLESEVKKADIAISDADAEQA 120

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
              +A +   + E F + L++QGI    +K+ LA Q     ++           E E   
Sbjct: 121 MKAYADSAFPTREAFYAALERQGISSAEYKKSLARQLAVQQLLHMAVGD-VTVSEDEAVK 179

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
               +K+   R      +  +        +    K     +  +         ++  +  
Sbjct: 180 FYDSIKDQLFRTPAGVNLQVARFGASADAEALRAKLQAGTDWVQATSGDALASMDVLSVT 239

Query: 226 IHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGE 281
                  +  +L ES         L        +  +    G   +A+  +R    +   
Sbjct: 240 ------REPLFLPESAFESGVLAELASLDVGAVSPVFSPASGDFSVAVKTERVSESVRPY 293

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
             + + + A     +  +   +Y   L + A +  Y
Sbjct: 294 EDVSSDVRAFLRSQEERRKLNDYEAALMAKAEVVIY 329


>gi|269837477|ref|YP_003319705.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786740|gb|ACZ38883.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 473

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/174 (10%), Positives = 50/174 (28%), Gaps = 12/174 (6%)

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
              K + + + G  E +        +    +              ++     +      A
Sbjct: 252 QQYKRNVLDEAGMSEEDFRRLVVLPEAARQKVVYALQEKIPTRAEQVHAAHILVATEDAA 311

Query: 206 EESRLRLPKDCNKLE----KFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNP 260
           +    +L +  +  E    + A     V+ G   +     +   F+ +         + P
Sbjct: 312 KAIEEQLRQGADFAELAKEQSADSATAVNGGDLGWFPRGLMVEPFEEVAFSLEPGEISAP 371

Query: 261 YVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             TQ G   I + +K     +  +           +     ++++++ R+   I
Sbjct: 372 VQTQFGWHIITVFEK---EADRPVDVETLQTLRNQQ----FSKWLEEQRAAVTI 418


>gi|149916817|ref|ZP_01905319.1| hypothetical protein PPSIR1_05633 [Plesiocystis pacifica SIR-1]
 gi|149822534|gb|EDM81923.1| hypothetical protein PPSIR1_05633 [Plesiocystis pacifica SIR-1]
          Length = 323

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/328 (13%), Positives = 91/328 (27%), Gaps = 34/328 (10%)

Query: 15  LLTTYFVLIIFCIVPIVS-----YKSWAMSSRIRTTINGEVITDGDISK--------RIA 61
           L+T    +       +V+          +  RI   ++ E+I + D+++           
Sbjct: 2   LITLGLAVGASMSSALVAPELAHAADPQVLDRIVAVVDDEIILESDLARWLMFDEEIAFE 61

Query: 62  LLKLQKING--------ELEKIAVQELIVETLKKQEIEKSGITFDS---NTVNYFFVQHA 110
           L KLQ            ELE +A+  LI   L   + +   +               + A
Sbjct: 62  LQKLQNPTEDQLMRRLAELEPLALDNLIGRKLMLSQAQTFQVGATEQEVEVYLQQLARSA 121

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
           + + ++    +     +      ++  L    I   +      +   + ++     + + 
Sbjct: 122 QLSSVAELRTAVEQSGRYGTWPEYRNKLREDIILYKLQGQLLNIAVSDAQV---LERYRE 178

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS 230
            +      L    L          +  V KR K                 +         
Sbjct: 179 LSKGEESRLAVRRLVFRAGEDSSERDAVFKRAKTVVRRLSGGEDFEAVAAELGQAAESEE 238

Query: 231 IGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK--RDLGGEIALKAYL 288
           +            P  + L K    +   P  + +G     + +    DL G    K  L
Sbjct: 239 V-----TRSGVSRPIGERLFKAKAGDVVGPLSSGQGYVVFLVEEVIASDLLGFEEAKDRL 293

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                    +K   E  ++LR+ A +  
Sbjct: 294 RRLLEEEARQKALKELYEQLRARAHVDI 321


>gi|330889992|gb|EGH22653.1| periplasmic folding chaperone [Pseudomonas syringae pv. mori str.
           301020]
          Length = 427

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 64/194 (32%), Gaps = 6/194 (3%)

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                     F     +   + ++ K+ F  K    + ++ A  QK       +     +
Sbjct: 15  KAHYDQHAKEFMSPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIANLSEQRRAAHI 74

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL 242
           L     N   N    + +I++ ++   +        ++++         G   Y  +   
Sbjct: 75  LI--EVNDKLNDEQAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKGVY 132

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEK 299
            P F++ L   +++  + P  T  G   I +       +    +LK  L+       +E+
Sbjct: 133 DPAFEDTLYALNKDQVSQPVRTDFGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQ 192

Query: 300 HEAEYVKKLRSNAI 313
              E  K+L  +A 
Sbjct: 193 KFVEVTKQLEDSAF 206



 Score = 37.0 bits (83), Expect = 4.2,   Method: Composition-based stats.
 Identities = 28/254 (11%), Positives = 65/254 (25%), Gaps = 9/254 (3%)

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             +L      +L+ +   +     +    DS   +    Q A++ GL  +  + F  + G
Sbjct: 178 KDKLTTDLKSQLVEQKFVEV----TKQLEDSAFESSDLSQPAQDLGLKVQTTAPFGREGG 233

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
            G    +  +        + +             +   + K      +  L         
Sbjct: 234 EGITANRAVIQAAFSPEVLEEGSNSNTLELDPETVVVVRSKEHLQPQQLPLESVASSIRT 293

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS--IGKAQYLLESDLHPQF 246
               ++     K   +A  + LR  K     ++       +       + +    L   F
Sbjct: 294 QLVKEHATAAAKAKGEALLAGLRDGKIPLAAKQDGRDWKSMEAVTRSQEGVDPQVLQTLF 353

Query: 247 QNLLKKSQN--NTTNPYVTQKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEKHEAE 303
           +      +      +          + +             KA           ++  A 
Sbjct: 354 RMPKPDGKGKPEFASITAADGSFVIVRLNGVNQAAAPTDAEKAQYRRFLASRAGQQDFAA 413

Query: 304 YVKKLRSNAIIHYY 317
           Y  +L S A I  +
Sbjct: 414 YRAQLESKAKIEKF 427


>gi|229068819|ref|ZP_04202115.1| Foldase protein prsA 2 [Bacillus cereus F65185]
 gi|229078459|ref|ZP_04211020.1| Foldase protein prsA 2 [Bacillus cereus Rock4-2]
 gi|229189353|ref|ZP_04316373.1| Foldase protein prsA 2 [Bacillus cereus ATCC 10876]
 gi|228594147|gb|EEK51946.1| Foldase protein prsA 2 [Bacillus cereus ATCC 10876]
 gi|228704881|gb|EEL57306.1| Foldase protein prsA 2 [Bacillus cereus Rock4-2]
 gi|228714327|gb|EEL66206.1| Foldase protein prsA 2 [Bacillus cereus F65185]
          Length = 285

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 77/304 (25%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + ++S       S    T     IT          LK +     L ++ 
Sbjct: 4   KHIFIITALISILMLSACGQKNGSATVATATDSTITK---DNFEKQLKDRYGKDMLYEMM 60

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
            Q++I +  K               VN    +  +  G        F           ++
Sbjct: 61  AQDVITKKYK----------VSDEEVNKEVEKVKKQYG------DQFKKVLENNGLKDEE 104

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 105 DFKNQIKFKLAMNEAIKKSITEKDVKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ +             ++ +  +      G   Y     + P+F+    K + 
Sbjct: 145 SDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFNSGTMAPEFETAAYKLNV 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              +NP  +  G   I + DK+DL     +K  +       +        + +++    A
Sbjct: 205 GQISNPVKSSNGYHVIKLTDKKDLKPYDEVKNSIRKNLEEERTADPVFSKKLLQEELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|157803578|ref|YP_001492127.1| protein export protein PrsA precursor [Rickettsia canadensis str.
           McKiel]
 gi|157784841|gb|ABV73342.1| Protein export protein PrsA precursor [Rickettsia canadensis str.
           McKiel]
          Length = 282

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 81/301 (26%), Gaps = 38/301 (12%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           + +IF  V ++S  ++A   ++  T  G  + +  I K        +    ++      L
Sbjct: 4   LSVIFLSVSMLSSIAFADKDKVVATYKGGEVKESQIMKEFKPQLNIQSGETIKSFDDFSL 63

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
             +    +                       N  L  E+ +              +    
Sbjct: 64  QDQEKLIKIYV--------------------NNLLLKEEVAKSHITASKEFQEKLENAKN 103

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           Q    +++ N       +   +   NK         +  +  +L              QK
Sbjct: 104 QLAQQELLANYIKSNITDKMFDDEYNKYVGNLKGKEQIKVAHIL-----------VKSQK 152

Query: 201 RIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYL---LESDLHPQFQNLLKK-SQN 255
              + +    +        E+ +  K    + G    +       L P+F+        N
Sbjct: 153 EANEIKTKLSKGGNFTKLAEELSLDKASASNGGVIGDIILNQPGQLVPEFEKKAFALKVN 212

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             + P  T  G   I + +K+ +   I  K                 +Y+  L + A + 
Sbjct: 213 EVSTPVKTDFGWHIIKVLEKKPVP--IPTKEDAKVTIDNILAAAILKQYISDLEAKADLK 270

Query: 316 Y 316
            
Sbjct: 271 I 271


>gi|319941578|ref|ZP_08015904.1| hypothetical protein HMPREF9464_01123 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804948|gb|EFW01790.1| hypothetical protein HMPREF9464_01123 [Sutterella wadsworthensis
           3_1_45B]
          Length = 633

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/398 (13%), Positives = 106/398 (26%), Gaps = 92/398 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVIT--DGDISK 58
           M          ++ ++   F++  F +  I SY     S      +    IT  + D++K
Sbjct: 1   MLQAFREH-KRWLMVIAMVFIIPSFVVTGIYSYNRMTQSDNSIVKVGEVSITPENFDLAK 59

Query: 59  RIALLKLQK-----------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
           R  L +L++              +  +  ++ L+ E    Q + K+ I+           
Sbjct: 60  RQQLERLRQEMGESFHASLLDTPQAREDLLRMLMDEAAINQVVAKNHISVSEAQAVALIK 119

Query: 108 QH---ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN-------------- 150
                  +   SAE +  FL  QG  D  F   +        VV                
Sbjct: 120 NADALKVDGKFSAERYEQFLRSQGKSDQQFVMEIRNDLAKEAVVSGVSATYPVPKALTEQ 179

Query: 151 -------------------DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                              D++ K    + EI A         +    I+        + 
Sbjct: 180 FYEILTEERSVRTLVLPADDYLDKVAVTDEEIKAYYNAHLKDFLSPEHIKAQYVVFSPDA 239

Query: 192 LQNQGF----------------------------------VQKRIKDAEESRLRLPKDCN 217
             NQ                                     +   K AEE    +  D +
Sbjct: 240 FSNQKASLDDLKTFYEQNKQRWTVPEERRASHILIEFGDDKEAARKKAEELANEVKADPS 299

Query: 218 KLEKFASKI-----HDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIA 271
           K  + A             G   +     +   F++ +    + +   P  T+ G   I 
Sbjct: 300 KFAELAKANSVDTGSAEQGGDLSFFGRGVMTKAFEDAVFNAKKGDIVGPIETEFGWHVIY 359

Query: 272 ICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
           + D           +K+ +  +    +  +  + +  +
Sbjct: 360 VTDIHPAAVEPFEDVKSEIEREYAQQQAIREFSTHADE 397


>gi|317475721|ref|ZP_07934980.1| ppic-type ppiase domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|316908104|gb|EFV29799.1| ppic-type ppiase domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 455

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/273 (10%), Positives = 80/273 (29%), Gaps = 12/273 (4%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKR--IALLKLQKINGELE 73
                +  +  +     Y    +   +   +  E I   ++ +    AL + +K + +  
Sbjct: 7   FKFVVLFALTLLAGSTVYGQDNVIDEVVWVVGDEAILKSEVEEARMSALYEGRKFDRDPY 66

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNY---FFVQHARNTGLSAEDFSSFLDKQGIG 130
            +  +E+ V+ L   +     I      V     +          S E    + +K    
Sbjct: 67  CVIPEEIAVQKLFLHQAALDSIEVSEAEVIQRVDYMTNMYITNIGSREKMEEYFNKTSSQ 126

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                +  A + +    ++   + +      E+    + +   ++     +  +  I   
Sbjct: 127 IRETLRDNAREGLKVQKMQQKLVGEIKITPAEVRRYFKDLPQDSIPYIPTQVEVQIITQQ 186

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-----HDVSIGKAQYLLESDLHPQ 245
                  ++   K   +   R+ K        A          +  G+ ++     L P 
Sbjct: 187 PKVPLEEIENVKKRLRDFTDRITKGETSFSTLARMYSEDRASAIRGGEIEFSGRGMLDPA 246

Query: 246 FQN--LLKKSQNNTTNPYVTQKGVEYIAICDKR 276
           + N     +  N  +    ++ G   I + +KR
Sbjct: 247 YANVAFNLQDPNKVSKIVESEYGFHIIQLIEKR 279


>gi|146307082|ref|YP_001187547.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina ymp]
 gi|145575283|gb|ABP84815.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina ymp]
          Length = 615

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/268 (10%), Positives = 82/268 (30%), Gaps = 14/268 (5%)

Query: 54  GDISKRIALLKLQKINGELEKIAVQELIV----ETLKKQEIEKSGITFDSNTVNYFFVQH 109
             + +++   +LQ      E++ + +L       +   ++  ++    +  T ++  V  
Sbjct: 137 DQVIRQMGYSRLQFRQMLEEEMLIGQLRAGLGASSFVTEQDARAFANLERQTRDFASVTI 196

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
             +        S          + F     +   + ++ K+ F  +    + ++    + 
Sbjct: 197 KADPAAVELADSDVQAYYDEHASEFMSPEQVVLEYVELHKDSFFDQIEVSDDDLQPLYES 256

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HD 228
                  +     +L         +    + +I++ +             ++F+      
Sbjct: 257 EIANLAEQRQAAHILI------EGDDAAARTKIEEIKARVDAGEDFAALAKEFSEDPGSA 310

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALK 285
              G   Y       P F+  L        + P  +  G   I +   +  ++    +LK
Sbjct: 311 ADGGDLGYAGPGVYDPAFEEALYALQTGQVSEPVRSDFGWHLIKLLGVQAPEVPSFDSLK 370

Query: 286 AYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             L+      ++E+   E  K+L   A 
Sbjct: 371 DKLARDFKAQQVEQRFVEATKQLEDAAF 398



 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/164 (11%), Positives = 54/164 (32%), Gaps = 16/164 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I  +    ++++       +  +   +      +NG+ IT  +++  +
Sbjct: 1   MLQNIRDNSRGWIAKIIIGLIVMLMAFTGFEAIVTGTSNRNNAAEVNGDTITLNELNTAV 60

Query: 61  ALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF- 106
            + + Q +                L + +++ LI   L  Q    +   F    ++    
Sbjct: 61  EMQRRQLLQQLGRDFDASLLDDKLLREASLKGLIERKLLLQAAGDADFAFSQAALDQVIL 120

Query: 107 --VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
              +   +    A  F   + + G     F+Q L  + +   + 
Sbjct: 121 QTPEFQVDGRFDAARFDQVIRQMGYSRLQFRQMLEEEMLIGQLR 164


>gi|115351951|ref|YP_773790.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria AMMD]
 gi|115281939|gb|ABI87456.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria AMMD]
          Length = 260

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 83/278 (29%), Gaps = 47/278 (16%)

Query: 43  RTTINGEVITDGDISKRIALL--KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I        +A L  + Q  + +L++   QEL+   +  QE  + GI    +
Sbjct: 25  IAVVNGTPIPKSRADAMVAQLVQQGQTDSPQLQQAVRQELVNREILMQEAIREGIPNRPD 84

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q++    +   F+ K    +
Sbjct: 85  VKAQV-------------------------------AVAQQTVVLRSMIESFLKKNQPTD 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+ A   ++                            +++ KD         K  +  +
Sbjct: 114 AEVKARYDELVKGAGGNREYHLHHIL---------VESEQQAKDLIAKIKGGAKFEDLAK 164

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAICDKRD 277
           +++       + G   +       P+F    +K  +   T+ P  TQ G   I   D RD
Sbjct: 165 QYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDTPVKTQFGWHIIRADDIRD 224

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +         + AQ     +++    + + LR  A I 
Sbjct: 225 VAP--PPFDQVKAQIAQQIVQQKLQAFEEGLRQQAKIQ 260


>gi|218128453|ref|ZP_03457257.1| hypothetical protein BACEGG_00021 [Bacteroides eggerthii DSM 20697]
 gi|217989344|gb|EEC55657.1| hypothetical protein BACEGG_00021 [Bacteroides eggerthii DSM 20697]
          Length = 455

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/273 (10%), Positives = 80/273 (29%), Gaps = 12/273 (4%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKR--IALLKLQKINGELE 73
                +  +  +     Y    +   +   +  E I   ++ +    AL + +K + +  
Sbjct: 7   FKFVVLFALTLLAGSTVYGQDNVIDEVVWVVGDEAILKSEVEEARMSALYEGRKFDRDPY 66

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNY---FFVQHARNTGLSAEDFSSFLDKQGIG 130
            +  +E+ V+ L   +     I      V     +          S E    + +K    
Sbjct: 67  CVIPEEIAVQKLFLHQAALDSIEVSEAEVIQRVDYMTNMYITNIGSREKMEEYFNKTSSQ 126

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                +  A + +    ++   + +      E+    + +   ++     +  +  I   
Sbjct: 127 IRETLRDNAREGLKVQKMQQKLVGEIKITPAEVRRYFKDLPQDSIPYIPTQVEVQIITQQ 186

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-----HDVSIGKAQYLLESDLHPQ 245
                  ++   K   +   R+ K        A          +  G+ ++     L P 
Sbjct: 187 PKVPLEEIENVKKRLRDFTDRITKGETSFSTLARMYSEDRASAIRGGEIEFSGRGMLDPA 246

Query: 246 FQN--LLKKSQNNTTNPYVTQKGVEYIAICDKR 276
           + N     +  N  +    ++ G   I + +KR
Sbjct: 247 YANVAFNLQDPNKVSKIVESEYGFHIIQLIEKR 279


>gi|30019316|ref|NP_830947.1| peptidylprolyl isomerase [Bacillus cereus ATCC 14579]
 gi|229126572|ref|ZP_04255586.1| Foldase protein prsA 2 [Bacillus cereus BDRD-Cer4]
 gi|46396826|sp|Q81GN0|PRSA2_BACCR RecName: Full=Foldase protein prsA 2; Flags: Precursor
 gi|29894859|gb|AAP08148.1| Peptidyl-prolyl cis-trans isomerase [Bacillus cereus ATCC 14579]
 gi|228656961|gb|EEL12785.1| Foldase protein prsA 2 [Bacillus cereus BDRD-Cer4]
          Length = 285

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/304 (8%), Positives = 76/304 (25%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + ++S       S    T     IT  +  K++             K  
Sbjct: 4   KHIFIITALISILMLSACGQKNGSATVATATDSTITKDNFEKQLK--------DRYGKDM 55

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           + E++ + +  ++ +      +                +  +    F           ++
Sbjct: 56  LYEMMAQDVITKKYKVPDEEVNKEVE-----------KVKKQYGDQFKKVLENYGLKDEE 104

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 105 DFKNQIKFKLAMNEAIKKSITEKDVKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ +             ++ +  +      G   Y     + P+F+    K + 
Sbjct: 145 SDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFNSGTMAPEFETAAYKLNV 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              +NP  +  G   I + DK+ L     +K  +       +        + +++    A
Sbjct: 205 GQISNPVKSSNGYHVIKLTDKKALKPYDEVKDSIRKNLEEERTADPVFSKKLLQEELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|297379400|gb|ADI34287.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori v225d]
          Length = 299

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 81/281 (28%), Gaps = 29/281 (10%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            S+ +  T++G  IT  D    I          +L++   + LI + ++   +E    T 
Sbjct: 40  SSAGVLATVDGRPITKSDFD-MIKQRNPNFDFDKLKEKEKEALIEQAIRTALVENEAKT- 97

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                             + E  +     +      F              + + + K  
Sbjct: 98  -------------EKLDQTPEFKAMIEAVKKQALVEFWAKK----------QAEEVKKIQ 134

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E E+       K+    +         +       +   +   +   +   +  +  N
Sbjct: 135 IPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELAN 194

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDK 275
           +     +  +  + G      ++ + P F +     +  + T  P  T+ G   I +  K
Sbjct: 195 RDTIDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGDYTKTPVKTEFGYHIIYLISK 254

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                      K  +         ++   + +++LR +A I
Sbjct: 255 DSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEELRKHAKI 295


>gi|297622266|ref|YP_003703700.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Truepera
           radiovictrix DSM 17093]
 gi|297163446|gb|ADI13157.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Truepera
           radiovictrix DSM 17093]
          Length = 398

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/305 (13%), Positives = 86/305 (28%), Gaps = 30/305 (9%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKR----IALLKLQK----------INGELEK 74
            + S  +      +   + GE ++ GD   R    +  L  Q+            G L+ 
Sbjct: 53  AMTSGAAAEDPDAVVLELGGERVSAGDFEGRFNIALRNLAAQQGIPLDPVTLAQFGTLKP 112

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             +++   E    QE E  G+      V     Q     G   E++ + L + G  D   
Sbjct: 113 AFLEQFATERALLQEAEARGLAPADEAVEAELEQARAAAG---ENYEALLAQGGFEDEAA 169

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
            + L  +S+    + +    +    +  + A  +  +    R   +      + D     
Sbjct: 170 LRELIYESLALQGLVDALEAEVEVGDEAVSAYYEANQAQFERSEEVCARHILVEDEATAE 229

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK-K 252
               +                       ++        G    L      P+F+      
Sbjct: 230 ALLTR---------LEAGEDFGELARDNSTDPGSAPEGGDLGCLPRGVTVPEFEEAAFAT 280

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
               TT P  +  G   I + ++     E A    + +Q       +   E +  L   +
Sbjct: 281 EVGETTGPVRSDFGYHLIRVYERNPA--ETAPLEEVRSQIEGQLRNEGLNERIASLVEAS 338

Query: 313 IIHYY 317
            +  Y
Sbjct: 339 GVQTY 343


>gi|288800858|ref|ZP_06406315.1| peptidyl-prolyl cis-trans isomerase, PPIC [Prevotella sp. oral
           taxon 299 str. F0039]
 gi|288332319|gb|EFC70800.1| peptidyl-prolyl cis-trans isomerase, PPIC [Prevotella sp. oral
           taxon 299 str. F0039]
          Length = 463

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 84/294 (28%), Gaps = 16/294 (5%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKR--IALLKLQKINGELEKIAVQELIVETLKKQE 89
           S    ++   +   +  E I   D+      + L+  K+NG+ + I  ++L V+ L   +
Sbjct: 31  SVNPQSVIDEVIWVVGDEPILKSDVEAMRLQSELEGVKLNGDPDCIIPEQLAVQKLFLHQ 90

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
                I    + ++                     + +       +Q +        +++
Sbjct: 91  AAIDSINISESEISSEIEHQINYWIQQIGSKEKLEEYRRQSITQIRQQMHDDFKNRLLIQ 150

Query: 150 ---NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
                 +        ++    + +   ++        +  I      +Q  + K   +  
Sbjct: 151 EMKKKLVKDIAVTPGDVRRYFESLPADSIPTIPTAVEVEIITMLPRVSQEEIAKVKNELR 210

Query: 207 ESRLRLPKDCNKLEKFASKIH-----DVSIGKAQYLLESDLHPQFQNLLKKSQN--NTTN 259
           E   R+ K        A             G+  Y       P F  +     +    + 
Sbjct: 211 EYTERVTKGETSFATLARLYSEDPGSARQGGEMDYTGRGMFDPAFAAVAFNLTDPKKISK 270

Query: 260 PYVTQKGVEYIAICDKRDLGGE---IALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
              T+ G   I + DKR    +   I  K  +SA+      +      +  LR 
Sbjct: 271 IVETEFGYHIIQLIDKRGDKVKVRHILRKPVVSAEIV-EATKVKMDSLLADLRD 323


>gi|327541670|gb|EGF28194.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopirellula
           baltica WH47]
          Length = 599

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/305 (8%), Positives = 80/305 (26%), Gaps = 30/305 (9%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
                  +  +    + +  A  + +   +N + I+   +                    
Sbjct: 22  LLLAAAFVAILSGFSTMRVEAAENSVVAVVNADPISRDSL--------ATASVQRYGTDV 73

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           +  LI   L  QE ++ G+   +  V     + A+  GL+ E +   L      D    Q
Sbjct: 74  LDNLINRHLIMQECKRRGLGVTTEEVRTEINRVAKKFGLNVESYLQLL--NEERDITPDQ 131

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
           Y          ++     +    + E            ++  ++                
Sbjct: 132 YSREIIWPMLALRKLVADEVAVSQDEFNRAIVSQFGEAIKCRMVMV-------------Q 178

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ--FQNLLKKSQ 254
              +  +   ++           ++F+      S+G     +   +  +   +       
Sbjct: 179 DKSQATQLRAQAVAEPSSFARLAKEFSEDPTSASVGGLIPPIRRYMGDETIEEAAFALKV 238

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIA-----LKAYLSAQNTPTKIEKHEAEYVKKLR 309
           +  +          ++    +             +K  +  +    K++   ++   +L+
Sbjct: 239 DEVSELLPVGDHWMFLQAVRRMPASTPSPQAMPAIKDQIEDRIRDEKMKTAASQLFAQLQ 298

Query: 310 SNAII 314
             A +
Sbjct: 299 EQAQV 303



 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/288 (9%), Positives = 83/288 (28%), Gaps = 18/288 (6%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKS 93
           ++ A    +   ING+ ++  +++                +  ++  I   L  Q + K+
Sbjct: 311 QASAKHPGVAAIINGQQVSISNVAAEC--------IKRHGESVLEGEINRKLLTQALAKA 362

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
           G    +  +     + A + G   ++ S+ +                +    DVV     
Sbjct: 363 GKKVTNEDLKAEIERAAISFGYMTDNGSADVQGWFDAVLEGGPGTR-EVYIEDVVWPSVA 421

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
           LK    +  +   +               VL  +  ++        +++ +         
Sbjct: 422 LKKLVEDKTVLTQEDLQIGFESHYGPRAEVLACVLSDQRS-----AQKVWEMARDNPTDQ 476

Query: 214 KDCNKLEKFASKI-HDVSIGKAQYLLE-SDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIA 271
                  +++ +     + GK   +          + + +    + +    T      + 
Sbjct: 477 FFGQLANQYSIEPVSSSNFGKVPPIKRHGGQPSVEKEVFQMKPGDLSGIIATGDKYIILR 536

Query: 272 ICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
                +  +    A++  L +     K+    +    +L+  A I  +
Sbjct: 537 CQGFTEPVVSDFEAVQEELRSVLIEKKMNVAMSLKYDELKQTAEIDNF 584


>gi|325108901|ref|YP_004269969.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces
           brasiliensis DSM 5305]
 gi|324969169|gb|ADY59947.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces
           brasiliensis DSM 5305]
          Length = 365

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/290 (10%), Positives = 78/290 (26%), Gaps = 27/290 (9%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIE 91
           +       S     +NG+ IT  DI  R            + +  ++ +I  T+   E E
Sbjct: 52  ASLGQPQQSPALARVNGQTIT-YDIVARECF-------ERIGEEVLENMINRTVIHVETE 103

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
           + G+      +N    + A    L  +    +   Q        QY          ++  
Sbjct: 104 RRGVQVTEADINNEVTKIAGKFNLPVDT--WYQMLQTERGLSPMQYRRDVIWPMIALRKL 161

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
              +    + ++       +         R ++        +      +   + ++    
Sbjct: 162 AGEEVQISQADMQRAF---QRDYGPRVRCRMIMMDNVRRANEVWEKANRTPDEFDKL--- 215

Query: 212 LPKDCNKLEKFASKIHDVS-IGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEY 269
                    +++ + +  S  G    +     +   ++   +      +     +     
Sbjct: 216 -------AREYSVESNSRSLGGSIPPISRYSGNQNLEDAAFRLQPGEVSGLIQVENHYVI 268

Query: 270 IAICDKRDLGGEIALK--AYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           +      +            L AQ    K ++  A   + L+ N  I  Y
Sbjct: 269 LKCEGHTEQVVTDIKDVWDELHAQLVEEKTQERVALVFENLKKNTRIDNY 318


>gi|109946965|ref|YP_664193.1| peptidyl-prolyl cis-trans isomerase [Helicobacter acinonychis str.
           Sheeba]
 gi|109714186|emb|CAJ99194.1| peptidyl-prolyl cis-trans isomerase [Helicobacter acinonychis str.
           Sheeba]
          Length = 298

 Score = 82.0 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 81/281 (28%), Gaps = 29/281 (10%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            S+ +  T++G+ IT  D    I          +L++   + L+ + ++   +E    T 
Sbjct: 37  ASAGVLATVDGKPITKSDFD-AIKQRNPNFDFDKLKEEEKKALVEQAIRTVLVENEAKT- 94

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                             + E  +     +      F              + + + K  
Sbjct: 95  -------------EKLDSTPEFKAMIDAVKKQALVEFWAKK----------QAEQVKKVK 131

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E E+       K     +         +       +   +   +   +   +  +  N
Sbjct: 132 IPEKEMQDFYNANKEQIFVKQEAHARHILVKSEDEAKRIISEIDKQPKTKREAKFIELAN 191

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDK 275
           +     +  +  + G      ++ + P F +     +  N T  P  T+ G   I +  K
Sbjct: 192 RDTIDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGNYTKTPIKTEFGYHIIYLISK 251

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            +         K  +         ++   + +++LR  A I
Sbjct: 252 DNPVTYTYEQAKPTIKGMLQEKLFQERMNQKIEQLRKQAKI 292


>gi|283956683|ref|ZP_06374162.1| hypothetical protein C1336_000260133 [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791932|gb|EFC30722.1| hypothetical protein C1336_000260133 [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 271

 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 80/296 (27%), Gaps = 32/296 (10%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           I+       S  S    + I   ++ E IT  DI + + +LK+          A+  LI 
Sbjct: 4   ILLSFAFFASLASANTINAIAVVVDKEPITTYDIDQTMKVLKID------RNQALGVLIN 57

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           E ++  ++++ GI  +   ++    +       +   F + L  +      F+  L    
Sbjct: 58  EKMEISQMKQLGIVVNDLELDDAINKMLAQNKTTLNAFKANLKSKNQSYEQFRANLKKDL 117

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
               + +    +   +   +      +        Y        + +N    +     + 
Sbjct: 118 EKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYLSNNPQTLENIKNTKK 177

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYV 262
              +     L                           +        L +      +    
Sbjct: 178 TILKPQNASLN------------------------TSNADPRLLGLLSQIPVGGFSPVLN 213

Query: 263 TQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + G E   +  K          +K  +       + +    +Y  KLRS   I Y
Sbjct: 214 GKNGYELYEVKSKDGAQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKINIEY 269


>gi|210134373|ref|YP_002300812.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori P12]
 gi|210132341|gb|ACJ07332.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori P12]
          Length = 299

 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/281 (10%), Positives = 77/281 (27%), Gaps = 29/281 (10%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            S+ +  T++G  IT  D    I          +L++   + LI + +            
Sbjct: 40  SSAGVLATVDGRPITKSDFD-MIKQRNPNFDFDKLKEKEKEALIEQAI-------RTALV 91

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
           ++               +        L +                      + + + K  
Sbjct: 92  ENEAKTEKLDSTPEFKAMMEAVKKQALVEFWAKK-----------------QAEEVKKVQ 134

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E E+       K+    +         +       +   +   +   +   +  +  N
Sbjct: 135 IPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELAN 194

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDK 275
           +     +  +  + G      ++ + P F +     +  + T  P  T+ G   I +  K
Sbjct: 195 RDTIDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGDYTKTPVKTEFGYHIIYLISK 254

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                      K  +         ++   + +++LR +A I
Sbjct: 255 DSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEELRKHAKI 295


>gi|332098560|gb|EGJ03526.1| PPIC-type PPIASE domain protein [Shigella boydii 3594-74]
          Length = 611

 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/384 (9%), Positives = 98/384 (25%), Gaps = 85/384 (22%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-- 70
           +  +    +++ F +  +  Y     ++     +N + I+ G         + +      
Sbjct: 1   MLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAFNSERNRMQQQLG 59

Query: 71  --------------ELEKIAVQELIVETLKKQEIEK-----------------SGITFDS 99
                          L +  +  LI E L  Q   +                      D 
Sbjct: 60  DQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQAIFATPAFQVDG 119

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN--------HFKQYLAIQSIWPDVVKND 151
              N  +       G++A+ ++  L  Q              F        +   V +  
Sbjct: 120 KFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVAQQR 179

Query: 152 FMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
            + +               E EI +  ++ KN  +     R     +    +Q       
Sbjct: 180 VVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLDAATMQQPVSDAD 239

Query: 201 RIKDAEE-----------------------------SRLRLPKDCNKLEKFASKI-HDVS 230
                ++                                +        ++ ++ I    +
Sbjct: 240 IQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIISARN 299

Query: 231 IGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYL 288
            G   +L ++ +  + +N   K +   +    +  G   + + D +    +    ++  +
Sbjct: 300 GGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAKVKSLDEVRDDI 359

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNA 312
           +A+    K         +K+   A
Sbjct: 360 AAKVKHEKALDAYYALQQKVSDAA 383


>gi|226227335|ref|YP_002761441.1| peptidyl-prolyl cis-trans isomerase [Gemmatimonas aurantiaca T-27]
 gi|226090526|dbj|BAH38971.1| peptidyl-prolyl cis-trans isomerase [Gemmatimonas aurantiaca T-27]
          Length = 610

 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/345 (11%), Positives = 86/345 (24%), Gaps = 64/345 (18%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCI-VPIVSYKSWAMSSRIRTTINGEVITDGDISKR 59
           M   + ++       +   FV          ++ ++   ++    T+NGE I        
Sbjct: 1   MLQSMRSAAKYIWIFIIVAFVGSFLLYETSGLAGRAPVTTTTSIATVNGEEILLTTWQNA 60

Query: 60  IALLKL-----------QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV- 107
           +  L+                 +LE  A  E++ E L +QE ++ GIT     V      
Sbjct: 61  VNSLEQQQQQQSGRGVTLDERQQLEDRAFDEIVTEILLQQEYKRRGITVTDEEVVQAARV 120

Query: 108 --------------QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF- 152
                             +        SS + +Q       + +   +     +      
Sbjct: 121 SPPPQATSSPDLQTDGKFDMQKYLRLLSSPMARQSGMLAGLEAFYRNEIPKQKLFDQVAS 180

Query: 153 ---------------------------------MLKYGNLEMEIPANKQKMKNITV-REY 178
                                                   + EI     + K        
Sbjct: 181 GAYVSDERLWQVYRDRHDSAAVSFVVLRTDALTDTSVTVTDAEISQFYDRNKKRYERPGR 240

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYL 237
            I ++L         +      RI       +   K  +  ++ +   +     G     
Sbjct: 241 AIVSLLTVPRTVTAADSAAAHTRIDQIRAEIVGGAKFEDVAKRESTDSLSGAQGGALGKG 300

Query: 238 LESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
             +   P+F+           + P +T  G   I + D++    +
Sbjct: 301 GRNRFTPKFEEAAYALKVGELSQPVLTPFGWHIIRVDDRKGDTLD 345



 Score = 49.7 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 2/77 (2%)

Query: 240 SDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKI 297
                               P+  Q G+  + I  + D       A KA    Q   +  
Sbjct: 517 GQFTQAIGGAFMVPVGQVGGPFRAQDGMVVLRIDSRNDAKRDAFEAEKASQRGQLLQSLR 576

Query: 298 EKHEAEYVKKLRSNAII 314
           ++   EY+  LR N  I
Sbjct: 577 QQRIDEYLSNLRENTKI 593


>gi|228984336|ref|ZP_04144517.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|229154831|ref|ZP_04282946.1| Foldase protein prsA 2 [Bacillus cereus ATCC 4342]
 gi|228628779|gb|EEK85491.1| Foldase protein prsA 2 [Bacillus cereus ATCC 4342]
 gi|228775453|gb|EEM23838.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 285

 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/304 (10%), Positives = 81/304 (26%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + +++      SS    T     IT  D  K+   LK +     L ++ 
Sbjct: 4   KHIFIITALISILMLAACGQKNSSATVATATDSTITKSDFEKQ---LKDRYGKDMLYEMM 60

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
            Q++I +  K  E +       + +      ++        ++                 
Sbjct: 61  AQDVITKKYKVSEDDVDKEVQKAKSQYGDQFKNILKNNGLKDEA---------------- 104

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 105 DFKNQIKFKLAMNEAIKKSVTEKDVKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ ++            ++ +  +      G   Y     + P+F+    K   
Sbjct: 145 SDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFHSGAMTPEFETAAYKLKI 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              ++P  +  G   I +  K+DL     +K  +       +I       + ++K    A
Sbjct: 205 GQISDPVQSPNGYHIIKLTGKKDLQPYNEVKDSIRKNLEAERIADPTFSHKLLQKELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|260912811|ref|ZP_05919297.1| peptidyl-prolyl cis-trans isomerase D [Pasteurella dagmatis ATCC
           43325]
 gi|260633189|gb|EEX51354.1| peptidyl-prolyl cis-trans isomerase D [Pasteurella dagmatis ATCC
           43325]
          Length = 625

 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/400 (10%), Positives = 102/400 (25%), Gaps = 88/400 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           +  K+ +  + ++  L    + + F +  I  Y  +         +NGE IT     +R 
Sbjct: 2   LIEKLHSITNSWVSKLVLGLIAVAFVLSGITGY-VFTNVDTSVAKVNGEEITQQAFHQRY 60

Query: 61  ALLKLQKING----------------ELEKIAVQELI-----------------VETLKK 87
                +                     L +  +  L+                  E +K+
Sbjct: 61  ESEFERLNQQLGSQFAAVAGSKGFVSNLRQSVLNSLVNQELLRQYANDLKLAVSDERIKQ 120

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD---------------------- 125
           + +       D    N  + +  +  G++A+ +++++                       
Sbjct: 121 EIVTSELFQTDGKFDNNLYQRRLQLNGMNADMYAAYVGEALRLDQLQSGLAESAFSVPAQ 180

Query: 126 --------KQGIGDNHFKQYLAIQSIWPDVVKNDFM------------------LKYGNL 159
                    Q       K  L  +     V + +                          
Sbjct: 181 QDQLTELFFQTRKLRLAKFDLKDEIAQQQVTEEEIKAYYDANKSAFSVPELAKVQYIELT 240

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV--QKRIKDAEESRLRLPKDCN 217
             ++  N Q       + Y     L+     +  +   +  ++  ++   +         
Sbjct: 241 RADVEKNIQVTDVEIAQYYQDNKALYVSQGQQRISHIELATEQDAQEVYAALQDGANFAG 300

Query: 218 KLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK 275
                +  KI   + G   +L    L   F++          + P         I + D+
Sbjct: 301 LASARSLDKISAANGGDLSWLSAGGLPKAFEDAANALEVGKFSQPVKVDSHYHIILVTDR 360

Query: 276 R--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           +  +      +K  ++ Q     +        K++   A 
Sbjct: 361 KSAEALPLSVVKTQIADQIRQNLVNNQYFSVEKQMAEKAF 400


>gi|308063037|gb|ADO04924.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori Sat464]
          Length = 299

 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 81/281 (28%), Gaps = 29/281 (10%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            S+ +  T++G  IT  D    I          +L++   + LI + ++   +E    T 
Sbjct: 40  SSAGVLATVDGRPITKSDFD-MIKQRNPNFDFDKLKEKEKEALIEQAIRTALVENEAKT- 97

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                             + E  +     +      F              + + + K  
Sbjct: 98  -------------EKLDQTPEFKAMMEAVKKQALVEFWAKK----------QAEEVKKIQ 134

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E E+       K+    +         +       +   +   +   +   +  +  N
Sbjct: 135 IPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELAN 194

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDK 275
           +     +  +  + G      ++ + P F +     +  + T  P  T+ G   I +  K
Sbjct: 195 RDTIDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGDYTKTPVKTEFGYHIIYLISK 254

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                      K  +         ++   + +++LR +A I
Sbjct: 255 DSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEELRKHAKI 295


>gi|330959391|gb|EGH59651.1| periplasmic folding chaperone [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 627

 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 66/195 (33%), Gaps = 6/195 (3%)

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
                      F     +   + ++ K+ F  K    + ++ A  QK       +     
Sbjct: 214 IKAHYDQHAKEFMSPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIANLAEQRRAAH 273

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESD 241
           +L     N   N+   + +I++ ++   +        ++++         G   Y  +  
Sbjct: 274 ILI--EVNDKLNEEQAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSNKGGDLGYAGKGV 331

Query: 242 LHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIE 298
             P F++ L   +++  + P  T  G   I +       +    +LK  L+      ++E
Sbjct: 332 YDPAFEDALYALNKDQVSQPVRTDFGWHLIKLLGVEAPSVPTFASLKDKLTNDLKSQQVE 391

Query: 299 KHEAEYVKKLRSNAI 313
           +   E  K+L  +A 
Sbjct: 392 QKFVEVTKQLEDSAF 406


>gi|254778889|ref|YP_003056994.1| Peptidyl-prolyl cis-trans isomerase C (PPIase) (Rotamase); putative
           signal peptide [Helicobacter pylori B38]
 gi|254000800|emb|CAX28724.1| Peptidyl-prolyl cis-trans isomerase C (PPIase) (Rotamase); putative
           signal peptide [Helicobacter pylori B38]
          Length = 299

 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 81/281 (28%), Gaps = 29/281 (10%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            S+ +  T++G  IT  D    I          +L++   + LI + ++   +E      
Sbjct: 40  SSAGVLATVDGRPITKSDFD-MIKQRNPNFDFDKLKEKEKEALIEQAIRTALVENEA--- 95

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                       A     + E  +     +      F              + + + K  
Sbjct: 96  -----------KAEKLDQTPEFKAMMEAVKKQALVEFWAKK----------QAEEVKKIQ 134

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E E+       K+    +         +       +   +   +   +   +  +  N
Sbjct: 135 IPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELAN 194

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDK 275
           +     +  +  + G      ++ + P F +     +  + T  P  T+ G   I +  K
Sbjct: 195 RDTIDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGDYTKTPVKTEFGYHIIYLISK 254

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                      K  +         ++   + +++LR +A I
Sbjct: 255 DSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEELRKHAKI 295


>gi|297566395|ref|YP_003685367.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus silvanus
           DSM 9946]
 gi|296850844|gb|ADH63859.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus silvanus
           DSM 9946]
          Length = 322

 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/315 (5%), Positives = 69/315 (21%), Gaps = 29/315 (9%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL--------------KL 65
               +         +       +   + G+ +         +                + 
Sbjct: 10  VCFGLALAQQTQPQQVQPADDPVVAEVGGQALKKSYFDFEWSFFVKTSLQRQGMPATPES 69

Query: 66  QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
           +      +   +  L  +    +  E++G+      V     +  ++         +   
Sbjct: 70  EAQFERFKPQFLGRLAKDYAVIKASERAGLAASKEAVENQVAEARKDFESDEAFNQALSQ 129

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
                 + ++  +     +   ++     +    E  +       +              
Sbjct: 130 VGIASIDDYRMLVYEALTYNAYLEQ-LQEQVKPSESALRLIYGLSQAEFTTPETYCASHI 188

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHP 244
            +           Q           +        ++++       + G            
Sbjct: 189 LVVSGDEAISLIRQ---------LGQGADFATLAKQYSQDPGSKDNGGDLGCEPRGTYVA 239

Query: 245 QFQNLLKK-SQNNTT-NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEA 302
            F+N + +     T+  P  T+ G   I +               + +      +++   
Sbjct: 240 PFENAMIRLKAGQTSREPVRTEFGFHIIRLNKIEPSTV--RPFDEVKSSIAERVVQRALE 297

Query: 303 EYVKKLRSNAIIHYY 317
           + + ++     I  Y
Sbjct: 298 KLLDRIAQRVGITLY 312


>gi|75762890|ref|ZP_00742701.1| Peptidyl-prolyl cis-trans isomerase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228899846|ref|ZP_04064091.1| Foldase protein prsA 2 [Bacillus thuringiensis IBL 4222]
 gi|74489622|gb|EAO53027.1| Peptidyl-prolyl cis-trans isomerase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228859750|gb|EEN04165.1| Foldase protein prsA 2 [Bacillus thuringiensis IBL 4222]
          Length = 285

 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/304 (11%), Positives = 81/304 (26%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + ++S       S    T     +T  D  K+   LK +     L ++ 
Sbjct: 4   KQIFIITALISILMLSACGQKNESATVATATDSTVTKDDFEKQ---LKDRYGKDMLYEMM 60

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
            Q++I +  K               VN    +  +  G        F           ++
Sbjct: 61  AQDVITKKYK----------VSDEEVNKEVEKVKKQYG------DQFKKVLENNGLKDEE 104

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 105 DFKNQIKFKLAMNEAIKKSITEKDVKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ +             ++ +  +      G   Y     + P+F+    K + 
Sbjct: 145 SDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFNSGTMAPEFETAAYKLNV 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              +NP  +  G   I + DK+DL     +K  +       +I       + +++    A
Sbjct: 205 GQISNPVKSSNGYHVIKLTDKKDLKPYDEVKKSIRKNLEEERIADPIFSKKLLQEELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|330503121|ref|YP_004379990.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina NK-01]
 gi|328917407|gb|AEB58238.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina NK-01]
          Length = 615

 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/268 (11%), Positives = 88/268 (32%), Gaps = 14/268 (5%)

Query: 54  GDISKRIALLKLQKINGELEKIAVQELIV----ETLKKQEIEKSGITFDSNTVNYFFVQH 109
             + +++   +LQ      E++ + +L       +   ++  ++    +  T ++  +  
Sbjct: 137 DQVIRQMGYTRLQFRQMLEEEMLIGQLRAGLGASSFVTEQEARAFANLERQTRDFASLTI 196

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
             +      + +          + F     +   + ++ K+ F  +    + ++    + 
Sbjct: 197 KADPAAVELNDADVKAYYDEHASEFMSPEQVVLEYVELQKDSFFDQVEVSDEDLKPLYES 256

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HD 228
                  +     +L         +    + +I++ ++            ++F+      
Sbjct: 257 EIANLAEQRQAAHILI------EGDDEAARSKIEEIKKRVDAGEDFAALAKEFSQDPGSA 310

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALK 285
           V  G   Y       P F+  L    Q   + P  ++ G   I +   +  ++    +LK
Sbjct: 311 VDGGDLGYAGPGVYDPAFEKALYALQQGQVSEPVKSEFGWHLIKLLGVQAPEVPSFDSLK 370

Query: 286 AYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             L+      ++E+H  E  K+L   A 
Sbjct: 371 DKLARDFKAQQVEQHFVEATKQLEDAAF 398



 Score = 63.2 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/164 (11%), Positives = 55/164 (33%), Gaps = 16/164 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I  +    ++++       +  +   +      +NG+ IT  ++++ +
Sbjct: 1   MLQNIRDNSRGWIAKIIIGLIVMLMAFTGFEAIVTGTSNRNNAADVNGDTITLNELNQAV 60

Query: 61  ALLKLQ-------------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF- 106
            + + Q                  L + +++ LI   L  Q    +   F   +++    
Sbjct: 61  EMQRRQLLQQLGRDFDASLLDEKLLREASLKGLIERKLLLQAANDAHFAFSQGSLDQVIL 120

Query: 107 --VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
              +   +    A  F   + + G     F+Q L  + +   + 
Sbjct: 121 QTPEFQVDGRFDASRFDQVIRQMGYTRLQFRQMLEEEMLIGQLR 164


>gi|121612944|ref|YP_001000964.1| hypothetical protein CJJ81176_1306 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167005873|ref|ZP_02271631.1| hypothetical protein Cjejjejuni_06850 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|87249622|gb|EAQ72581.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 271

 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/296 (11%), Positives = 78/296 (26%), Gaps = 32/296 (10%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           I+       S  S    + I   ++ E IT  DI + +  LK+          A+  LI 
Sbjct: 4   ILLSFAFFASLASANTINAIAVVVDKEPITTYDIDQTMKALKID------RNKALGVLIN 57

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           E ++  ++++ GI  +   ++    +       +   F + L  +      F+       
Sbjct: 58  EKMEISQMKQLGIVVNDLELDDAINKMLAQNKTTLNAFKANLKSKNRSYEQFRTNFKKDL 117

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
               + +    +   +   +      +        Y        + +N    +     + 
Sbjct: 118 EKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYLSNNPQTLENIKNTKK 177

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYV 262
              +     L                           +        L +      +    
Sbjct: 178 TILKPQNASLN------------------------TSNADPRLLGLLSQIPVGGFSPVLN 213

Query: 263 TQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + G E   +  K          +K  +       + +    +Y  KLRS   I Y
Sbjct: 214 GKNGYELYEVKSKDGTQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKINIEY 269


>gi|323343303|ref|ZP_08083530.1| peptidyl-prolyl cis-trans isomerase [Prevotella oralis ATCC 33269]
 gi|323095122|gb|EFZ37696.1| peptidyl-prolyl cis-trans isomerase [Prevotella oralis ATCC 33269]
          Length = 478

 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/261 (11%), Positives = 72/261 (27%), Gaps = 12/261 (4%)

Query: 33  YKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--GELEKIAVQELIVETLKKQEI 90
               +    +   +  E I   D+       + + +   G+ + I  +++ V+ L   + 
Sbjct: 45  IPENSTIDEVIWVVGDEPILKSDVEAMRLQAEAEGVKWSGDPDYIIPEQIAVQKLFLHQA 104

Query: 91  EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK- 149
           E   I      ++    Q        A       + +       +Q +  +     +V+ 
Sbjct: 105 EIDSIEVSETEISSGLDQQINRWIQMAGSREKLEEWRNQTIAQMRQQMHDEYKNTQLVQK 164

Query: 150 --NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
              + +        ++    + +   ++        +  I       Q  V +   +   
Sbjct: 165 MRQELVKDVKVTPADVRNYFRNLPEDSIPFVPTEVEVEIITKQPKITQEEVNRVKDELRG 224

Query: 208 SRLRLPKDCNKLEKFASKIH-----DVSIGKAQYLLESDLHPQFQNLLKKSQN--NTTNP 260
              R+ K        A             G+  Y     L P F ++     +    +  
Sbjct: 225 FTDRVMKGETTFATLARLYSEDPGTARQGGELGYTGRGMLDPAFASVAFNLTDPKKISKI 284

Query: 261 YVTQKGVEYIAICDKRDLGGE 281
             T+ G   I + DKR     
Sbjct: 285 VETEFGYHIIQLIDKRGDKVN 305


>gi|52425898|ref|YP_089035.1| SurA protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307950|gb|AAU38450.1| SurA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 622

 Score = 81.6 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/399 (9%), Positives = 95/399 (23%), Gaps = 88/399 (22%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
             K+  + +     +    + + F +  +  Y   A +      INGE I+     ++  
Sbjct: 3   MEKMHNASNSIFSKIIFALISVAFVVSGMAGYM-VATADTSAVKINGEEISQQAFQQQYN 61

Query: 62  LLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
               +                     L K  +  LI + L +Q +    +     +V   
Sbjct: 62  DEYQRLSQQLGAQFSAVADTPEFSEGLRKSVLNRLIDQELLRQYVTDLKLVASDASVKQE 121

Query: 106 F---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF---------- 152
                    +       +   L    +  + + +Y+        +               
Sbjct: 122 IVTTPAFQADGKFDNNAYQQTLRANNMTADMYAEYVREALRLDQLQSGLAGTVLMLPAQQ 181

Query: 153 -----------------------MLKYGNLEMEIPANKQKMKNITVREYLIR-------- 181
                                  M K    + E+       K+  +   L++        
Sbjct: 182 EEFAKLFFQKRTFRLAKLPLTAEMAKQTVTDQEVADYYNANKSAFMVPELVKVQYLDITR 241

Query: 182 -----------TVLFSIPDNKLQNQGFVQKRIKDAEE--------SRLRLPKDCNKLEKF 222
                        +     +         +      +           +  ++       
Sbjct: 242 AAAEKAVKVTDVEIQQYYQDNKAQFVSKAQDRLAHIQFAKETDALDAYQALQNGADFAAL 301

Query: 223 AS-----KIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR 276
           A      K   V+ G+  +L   DL   F+           + P         I + D++
Sbjct: 302 AKEKSLDKPSAVNGGELGWLNAGDLPKAFEEAAAALQIGQYSQPVKVDNQYHIIKLEDRK 361

Query: 277 DLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           +   +    +K  +++Q     +        K++   A 
Sbjct: 362 EPKAQSLEEVKDLIASQIRQDLLNNQFYSLEKQVAEKAF 400


>gi|254522729|ref|ZP_05134784.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stenotrophomonas sp.
           SKA14]
 gi|219720320|gb|EED38845.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stenotrophomonas sp.
           SKA14]
          Length = 299

 Score = 81.6 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/271 (7%), Positives = 72/271 (26%), Gaps = 40/271 (14%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           ++   I++ +I++ +   +  +      + A   ++ E L+ +         +   V+  
Sbjct: 48  VDETAISEAEIAREMQHHRAMRPEQSRAEAARALVVRELLRLEAQRLGLQALEGGRVSD- 106

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
                                              + +   ++++    +    E     
Sbjct: 107 ----------------------------------EEVLIQQLLEDAIDDRVPTDEDCRRY 132

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD--CNKLEKFA 223
            +Q  +     + +    +            F  +   +     L+       +   + +
Sbjct: 133 FEQNPERFRSPDRVRLRHILLAAPADDVAGRFAARTEGERLVGLLKESPHLFADFALRHS 192

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN-PYVTQKGVEYIAICDKRD--LGG 280
                   G   +L      P+F   + + +      P  ++ G   + +  + +     
Sbjct: 193 RCPSSSEGGDLGWLQRGQTTPEFDRQVFRLREGLAGFPVESRWGYHVVCVDAREEGQPQP 252

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             A+   L         ++    Y+ +L+  
Sbjct: 253 FEAVLPQLRDYLELQVRQREVQAYLLQLQER 283


>gi|300853330|ref|YP_003778314.1| putative foldase-like protein [Clostridium ljungdahlii DSM 13528]
 gi|300433445|gb|ADK13212.1| putative foldase related protein [Clostridium ljungdahlii DSM
           13528]
          Length = 247

 Score = 81.6 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/281 (10%), Positives = 79/281 (28%), Gaps = 39/281 (13%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
           M + +   +NG  I + D+ + I      K N        + L+ E +  +         
Sbjct: 1   MQNNVLAIVNGMEIKESDLKEAINRFPQDKRNQLNTAEGKKYLLNEMVFFELAYSYAKDE 60

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
           +    + +                                   + +    + +  M K  
Sbjct: 61  NLEKDDEYLKMLES--------------------------AKKEILTQIAI-SKVMNKVN 93

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             + E     +  K++  +   ++     +   +   +   +                  
Sbjct: 94  VTDKESQDYYEANKDMYKKPERLKAKHILVDSIEKAKKISKE---------ISEGMPFEE 144

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT-TNPYVTQKGVEYIAICDKR 276
             +K+++       G         + P+F+N       +  + P  TQ G   I + +K 
Sbjct: 145 AAQKYSTCPSKAQGGSLGEFARGQMVPEFENAAFSLDIDVVSEPVKTQFGYHLIKVEEKI 204

Query: 277 DLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +        +K  +       + +   +++ K+LRS   + 
Sbjct: 205 EPSIASYDEVKNAIKNGLLQERQKYEYSKFNKELRSKYKVE 245


>gi|229108722|ref|ZP_04238332.1| Foldase protein prsA 2 [Bacillus cereus Rock1-15]
 gi|228674752|gb|EEL29986.1| Foldase protein prsA 2 [Bacillus cereus Rock1-15]
          Length = 285

 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/304 (8%), Positives = 76/304 (25%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + ++S       S    T     IT  +  K++             K  
Sbjct: 4   KHIFIITALISILMLSACGQKNGSATVATATDSTITKDNFEKQLK--------DRYGKDM 55

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           + E++ + +  ++ +      +                +  +    F           ++
Sbjct: 56  LYEMMAQDVITKKYKVPDEEVNKEVE-----------KVKKQYGDQFKKVLENYGLKDEE 104

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 105 DFKNQIKFKLAMNEAIKKSITEKDIKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ +             ++ +  +      G   Y     + P+F+    K + 
Sbjct: 145 SDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFNSGTMAPEFETAAYKLNV 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              +NP  +  G   I + DK+ L     +K  +       +        + +++    A
Sbjct: 205 GQISNPVKSSNGYHVIKLTDKKALKPYDEVKDSIRKNLEEERTADPVFSKKLLQEELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|308061465|gb|ADO03353.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori Cuz20]
          Length = 299

 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 82/281 (29%), Gaps = 29/281 (10%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            S+ +  T++G+ IT  D    I          +L++   + LI + ++   +E    T 
Sbjct: 40  SSAGVLATVDGKPITKSDFD-MIKQRNPNFDFDKLKEKEKEALIEQAIRTALVENEAKT- 97

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                             + E  +     +      F              + + + K  
Sbjct: 98  -------------EKLDQTPEFKAMMEAVKKQALVEFWAKK----------QAEEVKKIQ 134

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E E+       K+    +         +       +   +   +   +   +  +  N
Sbjct: 135 IPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEIDKQPKTKKEAKFIELAN 194

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDK 275
           +     +  +  + G      ++ + P F +     +  N T  P  T+ G   I +  K
Sbjct: 195 RDTIDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGNYTKTPVKTEFGYHIIYLISK 254

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                      K  +         ++   + +++LR +A I
Sbjct: 255 DSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEELRKHAKI 295


>gi|152978448|ref|YP_001344077.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Actinobacillus
           succinogenes 130Z]
 gi|150840171|gb|ABR74142.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Actinobacillus
           succinogenes 130Z]
          Length = 624

 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/400 (11%), Positives = 108/400 (27%), Gaps = 88/400 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVIT-------- 52
           +  K+  + ++++       + + F +  +  Y   +  S     +NGE I+        
Sbjct: 2   LMEKLHHAANNWVSKAILGAIAVSFVVSGMYGYLGSSSDSSAV-KVNGEEISQQNFQQQY 60

Query: 53  DGDISKRIALLKLQ--------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           + +  +    L  Q        +    L +  +  LI + L +Q  ++  I      +  
Sbjct: 61  NNEFQRLEQQLGPQFAALSDTPEFTAGLRQTVLNRLIDQELLRQYGDELNIAVSDEQIKR 120

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
                 +   +   S E +  FL    +  + + QYL        +              
Sbjct: 121 EIVRTPEFQVDGKFSNETYQLFLRNNNLSSDTYAQYLREALRLAQLQSALTDTAFLLPAN 180

Query: 152 -----------------------FMLKYGNLEMEIPANKQKMKNITVREYLIR------- 181
                                   + K    E EI       K+      LI+       
Sbjct: 181 QEAFAKGFFQSRAVRLAHLPLAAEIAKQTVTEEEIQNYYNSNKSAFTVPELIKVQYLDLT 240

Query: 182 ------------TVLFSIPDNKLQNQGFV------------QKRIKDAEESRLRLPKDCN 217
                         +     +   +                +K   DA E+  +      
Sbjct: 241 QAAAEKTVKVTDVEIQQYYQDHKADFTTKGQERLAHIQLANEKEALDAYEALQKGADFAT 300

Query: 218 KLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK 275
             ++ +  K+  V+ G   +L   DL  +F++        + + P         I + ++
Sbjct: 301 LAKEKSNDKVSAVNGGDLGWLNTGDLPKEFEDAATILEVGHYSTPVNVDGQFHIIQVLER 360

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           +D        +K  ++       +        K+    A 
Sbjct: 361 KDSALLPLEQVKERITQAIRQDLVGNQFYAMEKQAAEKAF 400


>gi|317010455|gb|ADU84202.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
           SouthAfrica7]
          Length = 299

 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 78/281 (27%), Gaps = 29/281 (10%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            S+ +  T++G  IT  D    I          +L++   + LI + ++   +E      
Sbjct: 39  ASAGVLATVDGRPITKSDFD-MIKQRNPNFDFDKLKEKEKEALIEQAIRTALVENEA--- 94

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                       A     + E  +     +      F              + + + K  
Sbjct: 95  -----------KAEKLDQTPEFKAMMEAVKRQALVEFWAKK----------QAEEVKKIQ 133

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E E+       K+    +         +       +   +   +   +   +  +  N
Sbjct: 134 IPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEIDKQPKTKKEAKFIELAN 193

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT--NPYVTQKGVEYIAICDK 275
           +     +  +  + G      ++ + P F          T    P  T+ G   I +  K
Sbjct: 194 RDTIDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGTYTKTPVKTEFGYHIIYLISK 253

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                      K  +         ++   + +++LR +A I
Sbjct: 254 DSPITYTYEQAKPTIKGMLQEKLFQERMNQRIEELRKHAKI 294


>gi|208434128|ref|YP_002265794.1| peptidyl-prolylcis-transisomerase C [Helicobacter pylori G27]
 gi|208432057|gb|ACI26928.1| peptidyl-prolylcis-transisomerase C [Helicobacter pylori G27]
          Length = 299

 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/281 (10%), Positives = 77/281 (27%), Gaps = 29/281 (10%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            S+ +  T++G  IT  D    I          +L++   + LI + +            
Sbjct: 40  SSAGVLATVDGRPITKSDFD-MIKQRNPNFDFDKLKEKEKEALIEQAI-------RTALV 91

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
           ++               +        L +                      + + + K  
Sbjct: 92  ENEAKTEKLDSTPEFKAMMEAVKKQALVEFWAKK-----------------QAEEVKKIQ 134

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E E+       K+    +         +       +   +   +   +   +  +  N
Sbjct: 135 IPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELAN 194

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDK 275
           +     +  +  + G      ++ + P F +     +  + T  P  T+ G   I +  K
Sbjct: 195 RDTIDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGDYTKTPVKTEFGYHIIYLISK 254

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                      K  +         ++   + +++LR +A I
Sbjct: 255 DSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEELRKHAKI 295


>gi|281357480|ref|ZP_06243968.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Victivallis vadensis
           ATCC BAA-548]
 gi|281316083|gb|EFB00109.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Victivallis vadensis
           ATCC BAA-548]
          Length = 361

 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/310 (9%), Positives = 80/310 (25%), Gaps = 32/310 (10%)

Query: 37  AMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL-----------IVETL 85
           A    +   I  + IT  ++   +  L  Q  +G++  +   +L           + + +
Sbjct: 48  AKLPDVVAQIGDKKITKQEV---LKPLLAQMPDGKVPSMMADQLDNAAPGVIKWFVDQQI 104

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE-------DFSSFLDKQGIGDNHFKQYL 138
            +    K+G                   G              +   +Q   +      +
Sbjct: 105 LEAAAAKAGFKPSKEHAQKAVKAQWEKVGKEDRERFAQMLQIQNKTVEQYQEEMVSNPEI 164

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL--------IRTVLFSIPDN 190
             Q    + +K                  +  +                   ++     +
Sbjct: 165 QKQIALDEFLKTKIAEPTVTEAEMRKYYDENKQKEFSTPADRPGTFRASHILIMVDDKAD 224

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL- 249
               +  + +    + E +    +      + +        G      + ++ P+FQ   
Sbjct: 225 DAAKKAALDQINAISAELKKDPARFEALAREKSGCPSKAKGGSLDSFSDKEMVPEFQKAL 284

Query: 250 LKKSQNNTTNPYVTQKGVEYIA--ICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
               +   + P  TQ G   I         +     +K  +       K  +   +Y+ +
Sbjct: 285 EGLKEGEISAPVKTQFGYHIIRRDKLQSEKVESFDNVKETVGNILKRQKQMQAFTDYMAQ 344

Query: 308 LRSNAIIHYY 317
           L  ++ + ++
Sbjct: 345 LEKDSGVKFF 354


>gi|71083415|ref|YP_266134.1| SurA-like protein [Candidatus Pelagibacter ubique HTCC1062]
 gi|91762162|ref|ZP_01264127.1| hypothetical SurA-like protein [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|71062528|gb|AAZ21531.1| hypothetical SurA-like protein [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91717964|gb|EAS84614.1| hypothetical SurA-like protein [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 305

 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 111/302 (36%), Gaps = 19/302 (6%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI------NGELEKIA 76
           I+  +  I+ + + ++ ++I   I  E+IT+ DI      L             ++  I+
Sbjct: 5   ILIFLFVIICFHAQSIETKIIHNIQDEIITNIDIKNEFKYLVALNNSLKELDQEKILNIS 64

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFF---VQHARNTGLSAEDFSSFLDKQGIGDNH 133
            + +I E +KK EI K+      N           ++R    S  +F  +L    +  + 
Sbjct: 65  NESIIREKIKKIEISKNFKEIKLNEDYSELLLKNIYSRLNLKSINEFEIYLKDYDLKISD 124

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
            ++ + I ++W +++   +  K    E  +     K   I  +EY +  ++F + + +  
Sbjct: 125 IEKKITIDALWNELIIKKYSSKVVINEAVLKEELLKNNKIESKEYQLSEIIFEVKNKEEI 184

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK- 252
            + + +      E          N    ++        G   ++ E+ L+   +  +   
Sbjct: 185 EKKYKEVVKSINEIG------FENSAATYSFSDSAKIGGDIGWINENSLNNNIRKNISSL 238

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN---TPTKIEKHEAEYVKKLR 309
                T P +   G+  + + + +     I ++  L          ++ ++   Y  K++
Sbjct: 239 KVGEFTKPIILSNGILILKLINIKSSETTIDIENELKKAINYERNRQLNQYSKIYYNKIK 298

Query: 310 SN 311
            N
Sbjct: 299 KN 300


>gi|23098603|ref|NP_692069.1| post-translocation molecular chaperone [Oceanobacillus iheyensis
           HTE831]
 gi|46396906|sp|Q8CXK4|PRSA_OCEIH RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|22776830|dbj|BAC13104.1| protein secretion (post-translocation molecular chaperone)
           [Oceanobacillus iheyensis HTE831]
          Length = 299

 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/302 (7%), Positives = 82/302 (27%), Gaps = 40/302 (13%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELI 81
           +     + +++  +      I        IT  +  + +  +          +  +Q+L+
Sbjct: 6   IAASLSIGVLALSACNSDDEIVAETEAGNITKEEFYEELKDVNG--------ESTLQQLV 57

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
              + +              +               +  ++   + G  +      L   
Sbjct: 58  TVKVLE-----DNYEVTDEELEEEISTMKEGFPSEEDFNTTVEQQFGGEE-----QLREI 107

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
                + +          E ++    ++       ++++                  ++ 
Sbjct: 108 MYVSMLQEKAAAEDVEITEEDLQELYERKNTEIQAQHILL---------------ENEED 152

Query: 202 IKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN 259
           + + ++            +++++      + G   Y     + P+F+           ++
Sbjct: 153 VAEVQQKIEDGEDFGELAQEYSTDTGSAENGGDLGYFSAGSMVPEFEEAAFSLEAGEISD 212

Query: 260 PYVTQKGVEYIAICDKRD----LGGEIALKAYL-SAQNTPTKIEKHEAEYVKKLRSNAII 314
           P  +  G   I + D R+    +G    +K  L          +    E + KL  +A +
Sbjct: 213 PVQSTHGTHIIKVNDVREKEESIGEFEDVKKELEREILLNRVDQTQIQEKINKLIQDAGV 272

Query: 315 HY 316
             
Sbjct: 273 QI 274


>gi|86153052|ref|ZP_01071257.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|88596815|ref|ZP_01100052.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|157415552|ref|YP_001482808.1| hypothetical protein C8J_1232 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|85843937|gb|EAQ61147.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|88191656|gb|EAQ95628.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|157386516|gb|ABV52831.1| hypothetical protein C8J_1232 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|284926513|gb|ADC28865.1| possible periplasmic protein [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|307748192|gb|ADN91462.1| probable periplasmic protein [Campylobacter jejuni subsp. jejuni
           M1]
 gi|315932440|gb|EFV11383.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 271

 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/296 (11%), Positives = 78/296 (26%), Gaps = 32/296 (10%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           I+       S  S    + I   ++ E IT  DI + +  LK+          A+  LI 
Sbjct: 4   ILLSFAFFASLASANTINAIAVVVDKEPITTYDIDQTMKALKID------RNKALGVLIN 57

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           E ++  ++++ GI  +   ++    +       +   F + L  +      F+       
Sbjct: 58  EKMEISQMKQLGIVVNDLELDDAINKMLAQNKTTLNAFKANLKSKNQSYEQFRTNFKKDL 117

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
               + +    +   +   +      +        Y        + +N    +     + 
Sbjct: 118 EKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYLSNNPQTLENIKNTKK 177

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYV 262
              +     L                           +        L +      +    
Sbjct: 178 TILKPQNASLN------------------------TSNADPRLLGLLSQIPVGGFSPVLN 213

Query: 263 TQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + G E   +  K          +K  +       + +    +Y  KLRS   I Y
Sbjct: 214 GKNGYELYEVKSKDGTQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKINIEY 269


>gi|309791442|ref|ZP_07685948.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oscillochloris
           trichoides DG6]
 gi|308226521|gb|EFO80243.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oscillochloris
           trichoides DG6]
          Length = 363

 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/287 (11%), Positives = 79/287 (27%), Gaps = 33/287 (11%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLK 86
            +P+        S+   T +   VIT G+  +           G+     +++LI   L 
Sbjct: 90  ALPLPQAIGDVTSTEPITQVGDAVITRGEFVRAY-------QPGDEVSAVLKQLIQVELL 142

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
            Q+    G+T +++ ++        + G   E  +     Q   +   +  +    +   
Sbjct: 143 LQQAGVEGVTVEASELDAEIAAIKSSFGTPEEFTAMLAANQIESEEAMRSIIERNMLIDK 202

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           +V                     + + T+ +   R +L +     +  +    + I    
Sbjct: 203 MV---------------------LSHTTMEQVHARHILLATTAETVDARKAEAEAI---L 238

Query: 207 ESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQK 265
                         + +         G   +         F   +   Q +      T  
Sbjct: 239 AQIQGGADFAQLAAEKSEDPGSKDKGGDLGWAGRGMFVGPFDEAVFSMQKDEVRLVQTDF 298

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
           G   I + D   +   +     L          +    ++ +L ++A
Sbjct: 299 GWHIIQVLDPSTVRS-LDSADLLQTMAGQQAFTETFMVWLDQLYTDA 344


>gi|148244641|ref|YP_001219335.1| hypothetical protein COSY_0492 [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326468|dbj|BAF61611.1| hypothetical protein [Candidatus Vesicomyosocius okutanii HA]
          Length = 297

 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 107/295 (36%), Gaps = 10/295 (3%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVE 83
              ++ + S+  +A+ + I   +N ++IT   IS  I     +     L    V + I  
Sbjct: 8   TLLLICVFSFNIFAIPNSIVAIVNDDLITFDQISIDIKPNYTKAQKLTL----VNQQIDL 63

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            L+ Q+I++  I    N +N      A N  LS     S      + ++  +        
Sbjct: 64  ILQLQKIKQLSIVPKENVINSMLGNIALNNDLSLIQLQSLPQFDKVINHVKQNLSLEGLK 123

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
               +  +  ++  ++E+    +K       + + +    +     N++ +   ++ R+ 
Sbjct: 124 H--FIIENLNIELTDVEISKQLSKTPNHLNKLEKQIRIAQITINSTNQVDSNRLIKDRLI 181

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYV 262
           D  E   +        + ++      +  ++ +L  S L   FQ           + P+ 
Sbjct: 182 DLSEKINKGDSFSILKKIYSQDNFYKNDSESIWLNLSKLPKAFQQSLKGLLVGEISQPFK 241

Query: 263 TQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
             +    + I DKR +   +     L A+    K + +   +VKK+R  A I  +
Sbjct: 242 IGQVWRIVKIIDKRSVDNYLV---ELKAKLIRQKEDTYFYNWVKKIRKEAYIKIF 293


>gi|171060801|ref|YP_001793150.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii
           SP-6]
 gi|170778246|gb|ACB36385.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii
           SP-6]
          Length = 359

 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/288 (11%), Positives = 75/288 (26%), Gaps = 20/288 (6%)

Query: 44  TTINGEVITDGDISK------RIALLKLQKINGEL---EKIAVQELIVETLKKQEIEKSG 94
            T+   VI+  D  +      R      +    E     +    E++   L   E  + G
Sbjct: 59  ATVGDTVISRADYQRALAVAMRKKYYHAKPPEAEFARFRREVGDEVVNRVLLLAEARRRG 118

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
           I  D   +      +           +++   +          L  +S+   +       
Sbjct: 119 IVPDREQIAATVAGYDAQY----ASSANWQANRDQMLAAVLPQLESESLLERL-GQLVKR 173

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR--- 211
                E  + A   +   +      +R  +  +  +    Q        +  +   R   
Sbjct: 174 VPEPAEPVLRAYHAQHPALFTEPEQVRLSVILLKVDPSSPQAMWDAAHAEGRQLHRRLLA 233

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                +     +      + G+  Y     L      ++        + P    +GV  +
Sbjct: 234 GADFGDLARLHSGDRSAAAGGQMDYAHRGMLPEAVHGVVDALPPGGLSAPVQLLEGVAIL 293

Query: 271 AICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + D+R         ++A  +      + +    E +  LR    I  
Sbjct: 294 RLDDRRPARLRAFEQVRARAAELWQREQAQARWTELIDTLRRGTAIRI 341


>gi|288818384|ref|YP_003432732.1| hypothetical protein HTH_1073 [Hydrogenobacter thermophilus TK-6]
 gi|288787784|dbj|BAI69531.1| hypothetical protein HTH_1073 [Hydrogenobacter thermophilus TK-6]
 gi|308751977|gb|ADO45460.1| SurA domain protein [Hydrogenobacter thermophilus TK-6]
          Length = 290

 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/304 (13%), Positives = 100/304 (32%), Gaps = 25/304 (8%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K L      I+     + S  +  +  ++  ++NGE I + D+         Q       
Sbjct: 4   KGLKGISCGILLLATLVASAFAQKLVDKVIASVNGEPILESDVKLAELFYGTQD-----R 58

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
              + +L+   L  Q +E  G       ++   +  A+      E  +  L K+ +  + 
Sbjct: 59  HKVINKLVDVYLLAQFLESRGGRVPEEYISATLMDIAKANNTDLEGLAKELAKEELTLDD 118

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
            K++L  + +    +      +    ++++   K K   + +R  +   VL         
Sbjct: 119 LKRFLEKELLSTQGLSIYLSKEIKVSDLDVELEKLKRGEVKLRRDIDLLVLDKKDG---- 174

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS 253
                 +++    E R  L             +          + + DL       + K+
Sbjct: 175 ------EKLLKMMEERKTLQDIARAFSAKVESLS---------VEKGDLVEPLDKEVWKA 219

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             NT       + +    + D++++      +  L  +    KIE+   E ++ L+  + 
Sbjct: 220 PLNTLVVAEDGEHIYLAQVKDQKEIYSG-VSEDELRKEILAKKIEEKRRELLENLKKKSF 278

Query: 314 IHYY 317
           +  +
Sbjct: 279 VKIF 282


>gi|167836282|ref|ZP_02463165.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           thailandensis MSMB43]
          Length = 259

 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 81/278 (29%), Gaps = 48/278 (17%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKING--ELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I        IA L  Q      +LE+   QEL+   +  QE  K GI    +
Sbjct: 25  IAVVNGTPIPKSRADAMIAQLVQQGQQDTPQLEQAVRQELVNREILMQEAIKRGIPNRPD 84

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q+     +  DF+ K    +
Sbjct: 85  VKAQIV-------------------------------VAQQTAVLRALIEDFLKKNQPSD 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+ A   ++             +              +++ KD         K  +  +
Sbjct: 114 AELKARYDELVKNAGGREYHLHHILVDN----------EQQAKDLIAKIKGGAKFEDLAK 163

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAICDKRD 277
           +F+       + G   +       P+F    ++  +   T+ P  TQ G   I + D R 
Sbjct: 164 QFSKDPGSAKNGGDLDWSDPKAYVPEFAAAAQQLQKGQMTDAPVKTQFGWHIIRVDDVRS 223

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +         +  Q     +++    + + LR  A I 
Sbjct: 224 ITP--PPFEQVKQQIAQQMVQQKLQTFEEGLRQQAKIQ 259


>gi|126649428|ref|ZP_01721669.1| peptidylprolyl isomerase [Bacillus sp. B14905]
 gi|126593753|gb|EAZ87676.1| peptidylprolyl isomerase [Bacillus sp. B14905]
          Length = 326

 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 84/312 (26%), Gaps = 49/312 (15%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKINGELE 73
           +  T   L +   V  +   S   S  I T  +    I+  D +++   L          
Sbjct: 1   MKKTVLSLTLAASVLALGACSGGDSKAIVTSKVGD--ISVADFNEKAKSLTGSY------ 52

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
              +Q+L+ E +                +   +   A   G       +       G   
Sbjct: 53  --VLQQLVTEKVL-----SDKYEVTDKELKEAYDTTASQFGDGFAQALAESGLTEQGF-- 103

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                   S+   +++   +      E ++                          N   
Sbjct: 104 ------KDSLRVQLLQEKALKDQAIKEEDVKKYY---------------EQMKTELNGRH 142

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK 252
                +K  K+A E      K  +  +++++      + G+  +     +  +F +    
Sbjct: 143 ILVADEKTAKEAIEKIKGGAKFADVAKEYSTDTASAQNGGELGWFSVGSMVDEFNDAAYA 202

Query: 253 -SQNNTTNPYVTQKGVEYIAICDKRDLGG---EIALKAYLSAQNTPTK-----IEKHEAE 303
              N  + P  +  G   I I DKRD+         +  +              +    +
Sbjct: 203 LELNTLSEPVKSSFGYHVIEITDKRDVKDVGAFKDEEEKIRTSMLSKLNQTGEAQTILKD 262

Query: 304 YVKKLRSNAIIH 315
            V K+  +A + 
Sbjct: 263 IVAKMAKDANVK 274


>gi|189485156|ref|YP_001956097.1| rotamase surA-like protein [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|189485167|ref|YP_001956108.1| rotamase surA-like protein [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287115|dbj|BAG13636.1| rotamase surA-like protein [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287126|dbj|BAG13647.1| rotamase surA-like protein [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 351

 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 113/342 (33%), Gaps = 38/342 (11%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK-------- 64
           +K   +   +  F +     + +     +    +NG+ I + +++K    LK        
Sbjct: 1   MKKFFSVLAVTFFIVGVGSIFAAPKKVDQTLAIVNGKPIFESEVNKVFNNLKSDMLASEQ 60

Query: 65  -LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
             ++   EL+   ++  I   L K EI+K  I      V  +  +  +N  +  E     
Sbjct: 61  WSEQKINELKNRILERQIDSILLKNEIKKQKILVSRKEVLEYIKELKKNHAIDEELSKQN 120

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDV---VKNDFMLKYGNLEMEIPANKQKMKN-------- 172
           L  + +  +  +    ++ +   +    +     +  +   ++    +            
Sbjct: 121 LTYKDLEKSVSEIIRFMKLLGKILDVNAEKITEAEIKSFYDKVIIKMKGGNPGLSHDKDC 180

Query: 173 -----------ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
                      +      I+ +    P      +  V +   +  +  L++        K
Sbjct: 181 LAASVADELKKVFSENVRIKQIFIKNPKGTQDAETQVVQSKVETVKKELQVKSFAEVARK 240

Query: 222 FASKI-HDVSIGKAQ-YLLESDLHPQFQN-LLKKSQNNTT-NPYVTQKGVEYIAICDK-- 275
           ++  +      G    ++++ DL    +  +      + T  P  T  G  +I + +K  
Sbjct: 241 YSEDLISKSRNGDLGIFVVKGDLPLVLEKAVFSMKVGDYTKEPIKTDIGYYFIKLEEKLP 300

Query: 276 -RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            R +  +  +K Y++++      E+    Y+  LR+ A I  
Sbjct: 301 NRKIVFDGKVKDYINSRLLQFNNEQACIRYISTLRTKANIKI 342


>gi|330963316|gb|EGH63576.1| periplasmic folding chaperone [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 627

 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 63/194 (32%), Gaps = 6/194 (3%)

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                     F     +   + ++ K+ F  K    + ++ A  QK       +     +
Sbjct: 215 KAHYDQHAKEFMSPEQVVLDYIELKKSSFFDKVTVKDDDLQAAYQKEIANLSEQRRAAHI 274

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL 242
           L     N   N    + ++++ ++   +        ++F+         G   +  +   
Sbjct: 275 LI--EVNDKLNDEQAKAKVEEIQQRLAKGESFAALAKEFSQDPGSSSKGGDLGFAGKGVY 332

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEK 299
            P F+  L   +++  + P  T  G   I +       +    +LK  LS       +E+
Sbjct: 333 DPAFEEALYALNKDQVSQPVRTDFGWHLIKLLGVEAPSVPTFASLKEKLSNDLKSQLVEQ 392

Query: 300 HEAEYVKKLRSNAI 313
              E  K+L  +A 
Sbjct: 393 KFVEVTKQLEDSAF 406



 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/326 (9%), Positives = 82/326 (25%), Gaps = 32/326 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++ +     I +  +   + +    +NGE IT  ++S+ +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEAMFTATSNKQNAAEVNGEDITQNELSQAV 60

Query: 61  ALL-----------------KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            +                          L + A++ LI   L  Q    +  +F    ++
Sbjct: 61  DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAGDARFSFSDAALD 120

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE-ME 162
              +Q              F            Q+   Q +  +++             + 
Sbjct: 121 QQLLQTPEFQVDGKFSADRFDQVIRQLGYSRMQF--RQMLGQEMLIGQVRAGVAGSAFVT 178

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                   +            L + P         V+       +  +   +      + 
Sbjct: 179 DAQVDAFARLEKQTRDFASLTLPADPSAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIEL 238

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY-IAICDKRDLGGE 281
                   +     + + DL   +Q           N    ++     I + DK +    
Sbjct: 239 KKSSFFDKV----TVKDDDLQAAYQK-------EIANLSEQRRAAHILIEVNDKLNDEQA 287

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKK 307
            A    +  +    +     A+   +
Sbjct: 288 KAKVEEIQQRLAKGESFAALAKEFSQ 313


>gi|229149467|ref|ZP_04277703.1| Foldase protein prsA 2 [Bacillus cereus m1550]
 gi|228634109|gb|EEK90702.1| Foldase protein prsA 2 [Bacillus cereus m1550]
          Length = 282

 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/304 (8%), Positives = 76/304 (25%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + ++S       S    T     IT  +  K++             K  
Sbjct: 4   KHIFIITALISILMLSACGQKNGSATVATATDSTITKDNFEKQLK--------DRYGKDM 55

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           + E++ + +  ++ +      +                +  +    F           ++
Sbjct: 56  LYEMMAQDVITKKYKVPDEEVNKEVE-----------KVKKQYGDQFKKVLENYGLKDEE 104

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 105 DFKNQIKFKLAMNEAIKKSITEKDIKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ +             ++ +  +      G   Y     + P+F+    K + 
Sbjct: 145 SDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFNSGTMAPEFETAAYKLNV 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              +NP  +  G   I + DK+ L     +K  +       +        + +++    A
Sbjct: 205 GQISNPVKSSNGYHVIKLTDKKALKPYDEVKDSIRKNLEEERTADPVFSKKLLQEELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|332305578|ref|YP_004433429.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332172907|gb|AEE22161.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 627

 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 72/244 (29%), Gaps = 11/244 (4%)

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            +     L+       E           T +  ++    +        S    +     N
Sbjct: 162 RRQLSNALLGSEFTLLEETTQAYKLQQQTRDARYLTVPADMFKGDVTVSQSDVENYYQAN 221

Query: 133 HFKQYLAIQ--SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
             +     Q    + ++  +D +      E E     ++       +   R     I   
Sbjct: 222 ITQFDTQQQVSLAYVELSVDDLLAGIEVSEDEAEQYYEQNIQDFRTQEERRASHILI--E 279

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL 249
              +Q   +++ +D               E F+S      + G   +     + P F++ 
Sbjct: 280 FGDDQQKAEQQAEDILAKINNGEDFAELAETFSSDTFSAENGGDLDWFSMGMMDPAFEDA 339

Query: 250 LK--KSQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYV 305
               ++  + ++   ++ G   I + D +  +      +K  + A+    + E+    Y 
Sbjct: 340 AFALQNVGDVSDVVESEFGFHIIKLTDVKPEETSPFADVKEDVIAKLKAERAEEEF--YA 397

Query: 306 KKLR 309
           K+LR
Sbjct: 398 KQLR 401



 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 57/192 (29%), Gaps = 20/192 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++         +     V++ F    + SY + + +      +N E I+  D+ +  
Sbjct: 1   MLERIREGTQGTWAMAILGLVILSFVFAGVGSYIN-SSADTAAAKVNDETISQADLERAY 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +  +                 +  +  +  LI + L +Q     G+      +  
Sbjct: 60  QNERGRMESQYGEAFAALTADSAYLQQFRQGVLDRLIGDKLIEQAAVDLGLRVSDAQIKQ 119

Query: 105 FFVQHARNTGLSAEDFSSFLD---KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
             V           D   +     + G   N F+ Y+ +      +       ++  LE 
Sbjct: 120 AIVAMPEFQFDGKFDNERYSAVLRQAGFQPNEFRDYMRVDMTRRQLSNALLGSEFTLLEE 179

Query: 162 EIPANKQKMKNI 173
              A K + +  
Sbjct: 180 TTQAYKLQQQTR 191



 Score = 36.2 bits (81), Expect = 6.6,   Method: Composition-based stats.
 Identities = 25/252 (9%), Positives = 63/252 (25%), Gaps = 4/252 (1%)

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
            ++++  + +L  E  +++   K     +        +             +    +   
Sbjct: 376 ADVKEDVIAKLKAERAEEEFYAKQLRMAEVAFETPDTLDEVAAIAEVDVKTTVMFSQDSA 435

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                   +  Q+   +++ +        LE       +       R   +  V   I D
Sbjct: 436 PQAVNYPNVVSQAFSDELINDQVNSDVIELEDNHVMFIRVADYEAQRTKSLDEVSVEIND 495

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
             L  Q     +            +     +     I                      L
Sbjct: 496 ILLAEQAQQAAKEWAETVLSDIQSQQNVSDKLQTKGIEWQEQNAVTRNASQVSPAVVTAL 555

Query: 250 LKKSQNNTT--NPYVTQKG-VEYIAICDKRD-LGGEIALKAYLSAQNTPTKIEKHEAEYV 305
            K +    +         G V  + + +  +      +  A L  + T  + +   +E++
Sbjct: 556 FKLTDGEESNGQVVELFNGDVALVQLLEVNEGADLPSSDAAALQNRLTTMRAQFTYSEFI 615

Query: 306 KKLRSNAIIHYY 317
             LR  A +  Y
Sbjct: 616 NALREQADVEIY 627


>gi|294789088|ref|ZP_06754327.1| putative PPIC-type PPIASE domain protein [Simonsiella muelleri ATCC
           29453]
 gi|294482829|gb|EFG30517.1| putative PPIC-type PPIASE domain protein [Simonsiella muelleri ATCC
           29453]
          Length = 315

 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/317 (13%), Positives = 112/317 (35%), Gaps = 14/317 (4%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK-----LQK 67
           +K +    +  +   +   +     + + + T +N  +IT GDI + + LL+        
Sbjct: 1   MKHIKIITLASLLA-IHFQAAAEIRVLNGVATEVNASIITYGDIERTVRLLRSNPASASI 59

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
            N EL K A Q+L+   L     ++ G+   S  ++    + A     + E+  +   K 
Sbjct: 60  SNEELAKTAKQQLMERALLVYAAKEQGLKVTSAEIDAELNRRATAAHTTVENLFNQTKKL 119

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV------REYLIR 181
           G   + ++  +A   +   ++           + +I A   + +             +  
Sbjct: 120 GWSRDAYRLEVAKDLLVGRMID-RMNESVEVSDNDIQAYINQAQKDGQVVPSGNPYTVYN 178

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
                +  N+      V  R+K   +S           ++++ +      G  +    S 
Sbjct: 179 VRRIVLKINENNKAAAVGDRMKLIAKSVQSGSDFGTLAKRYSQEAAAAQNGVVELPENSQ 238

Query: 242 LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR-DLGGEIALKAYLSAQNTPTKIEKH 300
                  L       T+ P  T +  + + +  KR ++      +  +       + +K 
Sbjct: 239 PEKVEAMLQLLKVGETSAPIQTTQNWQMLQMLGKRTEIDPTKTQREAIRRLLVRKEQQKQ 298

Query: 301 EAEYVKKLRSNAIIHYY 317
           + +++++L  +A+++ +
Sbjct: 299 QTQFMQQLMHDAVVNNF 315


>gi|317176991|dbj|BAJ54780.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
           F16]
          Length = 299

 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 82/281 (29%), Gaps = 29/281 (10%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            S+ +  T++G +IT  D    I          +L++   + LI + ++   +E    T 
Sbjct: 40  SSAGVLATVDGRLITKSDFD-MIKQRNPNFDFDKLKEKEKEALIDQAIRTALVENEAKT- 97

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                             + E  +     +      F              + + + K  
Sbjct: 98  -------------ERLDSTPEFKAMMEAVKKQALVEFWAKK----------QAEEVKKIQ 134

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E E+       K+    +         +       +   +   +   +   +  +  N
Sbjct: 135 IPEKEMQDFYNANKDQFFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELAN 194

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDK 275
           +     +  +  + G      ++ + P F +     +  + T  P  T+ G   I +  K
Sbjct: 195 RDTIDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGDYTKTPVKTEFGYHIIYLISK 254

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                      K  +         ++   + +++LR +A I
Sbjct: 255 DSPVTYTYDQAKPTIKGMLQEKLFQERMNQKIEELRKHAKI 295


>gi|30020980|ref|NP_832611.1| peptidylprolyl isomerase [Bacillus cereus ATCC 14579]
 gi|46396822|sp|Q81CB1|PRSA4_BACCR RecName: Full=Foldase protein prsA 4; Flags: Precursor
 gi|29896533|gb|AAP09812.1| Protein export protein prsA precursor [Bacillus cereus ATCC 14579]
          Length = 280

 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 85/305 (27%), Gaps = 44/305 (14%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +     V+    +   +S  +   S  I TT +G  I++ D +K++             K
Sbjct: 1   MKRKKLVIGSILMGMTLSLSACGSSDNIVTTKSGS-ISESDFNKKLK--------ENYGK 51

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             + E++VE +   + + +                        E      D         
Sbjct: 52  QNLSEMVVEKVLHDKYKVTDEEVT---------------KQLEELKDKMGDNFNTYMESN 96

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                 Q      +   F         E          + V   L++             
Sbjct: 97  GVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYKPKLQVSHILVK------------- 143

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK- 252
               +K  K+ +E            ++++         G+        +  +F++   K 
Sbjct: 144 ---DEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVKEFEDAAYKL 200

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
                + P  +  G   I + DK++L      K  +  +    +I+  +   +  + L  
Sbjct: 201 EVGQLSEPVKSSFGYHIIKLTDKKELKPYEEEKENIRKELEQQRIQDPQFHQQVTRDLLK 260

Query: 311 NAIIH 315
           NA I 
Sbjct: 261 NADIK 265


>gi|228901403|ref|ZP_04065591.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 4222]
 gi|228858227|gb|EEN02699.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 4222]
          Length = 303

 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 85/305 (27%), Gaps = 44/305 (14%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           L     V+    +   +S  +   S  I TT +G  I++ D +K++             K
Sbjct: 24  LKRKKLVIGSILMGMTLSLSACGSSDTIVTTKSGS-ISESDFNKKLK--------ENYGK 74

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             + E++VE +   + + +                        E      D         
Sbjct: 75  QNLSEMVVEKVLDDKYKVTDEEVT---------------KQLKELKDKMGDNFNTYMESN 119

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                 Q      +   F         E          + V   L++             
Sbjct: 120 GVKNEDQLKEKLKLTFAFEKAIKATVTEKDFKDHYKPKLQVSHILVK------------- 166

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK- 252
               +K  K+ +E            ++++         G+        +  +F++   K 
Sbjct: 167 ---DEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVKEFEDAAYKL 223

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
                + P  +  G   I + DK++L      K  +  +    +I+  +   +  + L  
Sbjct: 224 EVGQLSEPVKSSFGYHIIKLTDKKELKPYEEEKENIRKELEQQRIQDPQFHQQVTRDLLK 283

Query: 311 NAIIH 315
           NA I 
Sbjct: 284 NADIK 288


>gi|167562430|ref|ZP_02355346.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           oklahomensis EO147]
 gi|167569612|ref|ZP_02362486.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
           oklahomensis C6786]
          Length = 259

 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 80/278 (28%), Gaps = 48/278 (17%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKING--ELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I        IA L  Q      +LE+   QEL+   +  QE  K GI    +
Sbjct: 25  IAVVNGTPIPKSRADAMIAQLVQQGQQDTPQLEQAVRQELVNREILMQEAIKRGIPNRPD 84

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q+     +  DF+ K    +
Sbjct: 85  VKAQIV-------------------------------VAQQTAVLRALIEDFLKKNQPSD 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+ A    +             +              +++ KD         K  +  +
Sbjct: 114 AELKARYDDLVKSAAGREYHLHHILVDN----------EQQAKDLIAKIKGGAKFEDLAK 163

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAICDKRD 277
           +++       + G   +       P+F    ++  +   T+ P  TQ G   I + D R 
Sbjct: 164 QYSKDPGSAKNGGDLDWSDPKAYVPEFAAAAQQLQKGQMTDAPVKTQFGWHIIRVDDIRS 223

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +         +  Q     +++    + + LR  A + 
Sbjct: 224 ITP--PPFEQVKQQIAQQMVQQKLQAFEEGLRQQAKVQ 259


>gi|285017392|ref|YP_003375103.1| peptidylprolyl isomerase (rotamase d) protein [Xanthomonas
           albilineans GPE PC73]
 gi|283472610|emb|CBA15115.1| probable peptidylprolyl isomerase (rotamase d) protein [Xanthomonas
           albilineans]
          Length = 661

 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/250 (10%), Positives = 68/250 (27%), Gaps = 13/250 (5%)

Query: 70  GELEKIAVQELIVETLKKQ--EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
            +L + A+Q+ ++ T   +     K         +                D +   D Q
Sbjct: 172 QQLVRDALQQSVIPTGLMESAFGSKQETERLMKMLGETRDVELAMLPEMPADTAPVSDAQ 231

Query: 128 GIGDNHFKQYLAIQ-----SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT--VREYLI 180
                        Q       + ++            E  +    ++ K       + L 
Sbjct: 232 VQQWYDTHTSDFKQPETVSIEYVELNAAKLPASKPADEATLRKRYEEEKARFVEPDQRLA 291

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
             +L S   +    +    K +K A E++             +       + G   ++ +
Sbjct: 292 SHILISAGKDAASQKAAEAKAVKLAAEAKRPGADFAALARANSDDPGSKNAGGDLGWVEK 351

Query: 240 SDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE 298
             +   F++            P  ++ G   I + + +   G+      +  Q    +++
Sbjct: 352 GVMVKPFEDALFAMKPGEIVGPVKSEFGYHVIQLREVKGGKGKS--FEQVRDQLASEQLQ 409

Query: 299 KHEAEYVKKL 308
               + +  L
Sbjct: 410 ADNEKALSAL 419



 Score = 40.0 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 19/255 (7%), Positives = 57/255 (22%), Gaps = 35/255 (13%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTI-------------- 46
           M   +    S +I       ++I F  V    Y     ++     +              
Sbjct: 1   MLQTLREKTSGWIATAIIGLLMIPFLFVIDTGYLGGVGANN-VAKVQAPPSWWLSAPSWW 59

Query: 47  ------NGEVITDGDISKRI-------------ALLKLQKINGELEKIAVQELIVETLKK 87
                     I+                     A    +  + + ++  + +LI E + K
Sbjct: 60  PVSLLWQHHEISTEQFRMGFEQARQQARQQQGEAFDPREFESIDNKRKVLDQLIDEQVVK 119

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
              E++G+     +V  +             D   +      G       +  Q +   +
Sbjct: 120 LAAEQAGVVIGDASVRDYIASIPAFQNNGKFDPERYRLALASGTPPRTPAMFQQLVRDAL 179

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
            ++                 +++  +      +                   +  +  + 
Sbjct: 180 QQSVIPTGLMESAFGSKQETERLMKMLGETRDVELA-MLPEMPADTAPVSDAQVQQWYDT 238

Query: 208 SRLRLPKDCNKLEKF 222
                 +      ++
Sbjct: 239 HTSDFKQPETVSIEY 253


>gi|228919984|ref|ZP_04083338.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839697|gb|EEM84984.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 285

 Score = 81.3 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/304 (9%), Positives = 77/304 (25%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + ++S       S    T     IT  +  K++             K  
Sbjct: 4   KHIFIITALISILMLSACEQKNGSATVATATDSTITKDNFEKQLK--------DRYGKDM 55

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           + E++ + +  ++ +      +                +  +    F           ++
Sbjct: 56  LYEMMAQDVITKKYKVPDEEVNKEVE-----------KVKKQYGDQFKKVLENNGLKDEE 104

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 105 DYKNQIKFKLAMNEAIKKSITEKDVKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ +             ++ +  +      G   Y     + P+F+    K + 
Sbjct: 145 SDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFNSGTMAPEFETAAYKLNV 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              +NP  +  G   I + DK+DL     +K  +       +        + +++    A
Sbjct: 205 GQISNPVKSSNGYHVIKLTDKKDLKPYDEVKNSIRKNLEEERTADPVFSKKLLQEELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|330878776|gb|EGH12925.1| periplasmic folding chaperone [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 627

 Score = 80.9 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 63/194 (32%), Gaps = 6/194 (3%)

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                     F     +   + ++ K+ F  K    + ++ A  QK       +     +
Sbjct: 215 KAHYDQHAKEFMSPEQVVLDYIELKKSSFFDKVTVKDEDLQAAYQKEIANLSEQRRAAHI 274

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL 242
           L     N   N    + ++++ ++   +        ++F+         G   +  +   
Sbjct: 275 LI--EVNDKLNDEQAKAKVEEIQQRLAKGESFAALAKEFSQDPGSSSKGGDLGFAGKGVY 332

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEK 299
            P F+  L   +++  + P  T  G   I +       +    +LK  LS       +E+
Sbjct: 333 DPAFEEALYALNKDQVSQPVRTDFGWHLIKLLGVEAPSVPTFASLKEKLSNDLKSQLVEQ 392

Query: 300 HEAEYVKKLRSNAI 313
              E  K+L  +A 
Sbjct: 393 KFVEVTKQLEDSAF 406



 Score = 57.0 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/326 (9%), Positives = 80/326 (24%), Gaps = 32/326 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++ +     I +  +   + +    +NGE IT  ++S+ +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEAMFTATSNKQNAAEVNGEDITQNELSQAV 60

Query: 61  -----------------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
                                       L + A++ LI   L  Q    +  +F    ++
Sbjct: 61  DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAGDARFSFSDAALD 120

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE-ME 162
              +Q              F            Q+   Q +  +++             + 
Sbjct: 121 QQLLQTPEFQVDGKFSADRFDQVIRQLGYSRMQF--RQMLGQEMLIGQVRAGVAGSAFVT 178

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                   +              + P         V+       +  +   +      + 
Sbjct: 179 DAQVDAFARLEKQTRDFASLTQPADPSAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIEL 238

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY-IAICDKRDLGGE 281
                   +     + + DL   +Q           N    ++     I + DK +    
Sbjct: 239 KKSSFFDKV----TVKDEDLQAAYQK-------EIANLSEQRRAAHILIEVNDKLNDEQA 287

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKK 307
            A    +  +    +     A+   +
Sbjct: 288 KAKVEEIQQRLAKGESFAALAKEFSQ 313


>gi|289627508|ref|ZP_06460462.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649941|ref|ZP_06481284.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868371|gb|EGH03080.1| periplasmic folding chaperone [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 627

 Score = 80.9 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 64/194 (32%), Gaps = 6/194 (3%)

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                     F     +   + ++ K+ F  K    + ++ A  QK       +     +
Sbjct: 215 KAHYDQHAKEFMSPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIANLSEQRRAAHI 274

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL 242
           L     N   N    + +I++ ++   +        ++++         G   Y  +   
Sbjct: 275 LI--EVNDKLNDEQAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKGVY 332

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEK 299
            P F++ L   +++  + P  T  G   I +       +    +LK  L+       +E+
Sbjct: 333 DPAFEDSLYALNKDQVSQPVRTDFGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQ 392

Query: 300 HEAEYVKKLRSNAI 313
              E  K+L  +A 
Sbjct: 393 KFVEVTKQLEDSAF 406



 Score = 55.8 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/327 (8%), Positives = 77/327 (23%), Gaps = 33/327 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++ +     I +  +   + +    +NGE I+  ++S+ +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDISQNELSQAV 60

Query: 61  -----------------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
                                       L + A++ LI   L  Q    +  +F    ++
Sbjct: 61  DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSDAALD 120

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE-ME 162
              +Q              F            Q+   Q +  +++             + 
Sbjct: 121 QQLLQTPEFQVDGKFSADRFDQVIRQLGYSRLQF--RQMLGQEMLIGQVRAGVAGSAFVT 178

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                   +            L +           V+       +  +   +      + 
Sbjct: 179 DAQVDAFARLEKQTRDFASLTLPADTTAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIEL 238

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY-IAICDKRDLGGE 281
                        +  +  +  +      +      N    ++     I + DK +    
Sbjct: 239 KKSS---------FFDKVQVKDEDLQAAYQK--EIANLSEQRRAAHILIEVNDKLNDEQA 287

Query: 282 IALKAYLSAQNTP-TKIEKHEAEYVKK 307
            A    +  +            EY + 
Sbjct: 288 KAKIEEIQQRLAKGEDFAALAKEYSQD 314



 Score = 35.8 bits (80), Expect = 7.6,   Method: Composition-based stats.
 Identities = 29/254 (11%), Positives = 66/254 (25%), Gaps = 9/254 (3%)

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             +L      +L+ +   +     +    DS   +    Q A++ GL  +  + F  + G
Sbjct: 378 KDKLTTDLKSQLVEQKFVEV----TKQLEDSAFESSDLSQPAQDLGLKVQTTAPFGREGG 433

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
            G    +  +        + +             +   + K      +  L         
Sbjct: 434 EGITANRAVIQAAFSPEVLEEGSNSNTLELDPETVVVVRSKEHLQPQQLPLESVASSIRT 493

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS--IGKAQYLLESDLHPQF 246
               ++     K   +A  + LR  K     ++       +       + +    L   F
Sbjct: 494 QLVKEHATAAAKAKGEALLAGLRDGKIPLAAKQDGRDWKSMEAVTRSQEGVDPQVLQTLF 553

Query: 247 QNLLKKSQN--NTTNPYVTQKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEKHEAE 303
           +      +      +          + +             KA           ++  A 
Sbjct: 554 RMPKPDGKGKPEFASITAADGSFVIVRLNGVNQAAAPTDAEKAQYRRFLASRAGQQDFAA 613

Query: 304 YVKKLRSNAIIHYY 317
           Y  +L SNA I  +
Sbjct: 614 YRAQLESNAKIEKF 627


>gi|319792645|ref|YP_004154285.1| ppic-type peptidyL-prolyl cis-trans isomerase [Variovorax paradoxus
           EPS]
 gi|315595108|gb|ADU36174.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus
           EPS]
          Length = 638

 Score = 80.9 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/399 (10%), Positives = 105/399 (26%), Gaps = 101/399 (25%)

Query: 5   VFTSLSDF--IKLLTTYFVLI-IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK--R 59
           +F     +  I ++  + ++I  F +  +  Y+      +    I G  IT  +     R
Sbjct: 1   MFDFFRKYNKIVMIFLFLLIIPSFVLFGVERYQGSGRDEK-VAHIEGGDITKPEWDAQHR 59

Query: 60  IALLKLQKINGE----------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
           I   ++++ +            L    ++ ++ + +      K+ +T   + ++  F Q 
Sbjct: 60  IETDRIRQQSPNVDPTVLDSDALRYATLERMVRDRVLAAAAAKANMTVSEDRLSRIFAQD 119

Query: 110 ----ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-------------- 151
               +  T     D  +FL   G     ++  +        V+                 
Sbjct: 120 PGLASFRTPDGKFDRETFLRVTGRTPEQYEAQVRADMSTQQVLLGVSGTALTPPALVAAT 179

Query: 152 -------------------FMLKYGNLEMEIPANKQKMKNITVREYL------------- 179
                              F  K    + +I A  +   +                    
Sbjct: 180 VNAFYDRREIQVARFAPDGFASKVTVSDADIEAYYKDHTSQFQAPEQANIEYLVLDLDAA 239

Query: 180 ---------------------------IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
                                       R     I      +    +K    AE+    +
Sbjct: 240 KKNVVVNEADLKTYYEQNTARFGTKEERRASHILITAPASMSAADREKAKAKAEQLLAEV 299

Query: 213 PKDCNKLEKFASKI-----HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKG 266
            K  N     A K           G   ++ +  +   F++ +    +   +    T+ G
Sbjct: 300 KKAPNTFADVARKNSQDPGSAEKGGDLDFVTKGAMVKPFEDAMFALKKGEISGVVETEFG 359

Query: 267 VEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAE 303
              I + D +         ++A + ++    +  +  A+
Sbjct: 360 YHIIHLVDIKPAVVPPFEQVRATIESEVRAAQAAQEFAK 398


>gi|299066735|emb|CBJ37929.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Ralstonia
           solanacearum CMR15]
          Length = 637

 Score = 80.9 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/407 (9%), Positives = 99/407 (24%), Gaps = 106/407 (26%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI------------ 60
           + L+    V   F    +  Y  +   S     +   VIT  ++  R+            
Sbjct: 1   MFLVLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDTVITTSELDTRVREQTERLRQMLG 60

Query: 61  -ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ-------HARN 112
                 Q    ++ +  +  +I + +   E  ++ ++   + V     Q          +
Sbjct: 61  AQYDPRQFEGPQMRRDVLDGIIQQRVMVNEASRANLSVADSKVRETIEQIPAVTQLRKPD 120

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK----------------------- 149
                + +   L  QG+  + F   +  + +   + +                       
Sbjct: 121 GKFDTDAYIKLLAAQGMTPDQFDARVRSELVLQQIPQSIVSSAFVPKSLVDRLIEARDQQ 180

Query: 150 ----------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG--- 196
                      D+  +    +  I A     +        ++          +  Q    
Sbjct: 181 REVQALLFKPADYAAEVTADDKAIQAYYDAHQQEFAVPEQVKAEYVVFSGEDMMKQIPVT 240

Query: 197 -FVQKRIKDAEESRLRLPKDCNKL------------------------------------ 219
               K   D   +R +  +                                         
Sbjct: 241 PEQLKEYYDQNAARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEEVLAEVRKSPGSF 300

Query: 220 EKFASKIHDVSI-----GKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
            + A K           G+  +L +    P F+N L   K   + ++   +  G   I +
Sbjct: 301 AELAKKYSGDPGSAAQGGELGFLAKGATVPPFENALFALKQPGDISDVVESDFGFHIIKL 360

Query: 273 CDKRDLG------GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            + +  G       +  L+  +  Q    K  +    +   +   + 
Sbjct: 361 EEVKGGGVQSLDAVKPELEREVRTQLANKKYTELADAFSNGVEDQSD 407


>gi|257483811|ref|ZP_05637852.1| peptidyl-prolyl cis-trans isomerase D, putative [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|320327650|gb|EFW83658.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330985643|gb|EGH83746.1| periplasmic folding chaperone [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331012683|gb|EGH92739.1| periplasmic folding chaperone [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 627

 Score = 80.9 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 64/194 (32%), Gaps = 6/194 (3%)

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                     F     +   + ++ K+ F  K    + ++ A  QK       +     +
Sbjct: 215 KAHYDQHAKEFMSPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIANLSEQRRAAHI 274

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL 242
           L     N   N    + +I++ ++   +        ++++         G   Y  +   
Sbjct: 275 LI--EVNDKLNDEQAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKGVY 332

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEK 299
            P F++ L   +++  + P  T  G   I +       +    +LK  L+       +E+
Sbjct: 333 DPAFEDTLYALNKDQVSQPVRTDFGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQ 392

Query: 300 HEAEYVKKLRSNAI 313
              E  K+L  +A 
Sbjct: 393 KFVEVTKQLEDSAF 406



 Score = 55.8 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/327 (8%), Positives = 78/327 (23%), Gaps = 33/327 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++ +     I +  +   + +    +NGE I+  ++S+ +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDISQNELSQAV 60

Query: 61  ALL-----------------KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            +                          L + A++ LI   L  Q    +  +F    ++
Sbjct: 61  DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSDAALD 120

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE-ME 162
              +Q              F            Q+   Q +  +++             + 
Sbjct: 121 QQLLQTPEFQVDGKFSADRFDQVIRQLGYSRLQF--RQMLGQEMLIGQVRAGVAGSAFVT 178

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                   +            L +           V+       +  +   +      + 
Sbjct: 179 DAQVDAFARLEKQTRDFASLTLPADTTAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIEL 238

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY-IAICDKRDLGGE 281
                        +  +  +  +      +      N    ++     I + DK +    
Sbjct: 239 KKSS---------FFDKVQVKDEDLQAAYQK--EIANLSEQRRAAHILIEVNDKLNDEQA 287

Query: 282 IALKAYLSAQNTP-TKIEKHEAEYVKK 307
            A    +  +            EY + 
Sbjct: 288 KAKIEEIQQRLAKGEDFAALAKEYSQD 314



 Score = 36.2 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 28/254 (11%), Positives = 65/254 (25%), Gaps = 9/254 (3%)

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             +L      +L+ +   +     +    DS   +    Q A++ GL  +  + F  + G
Sbjct: 378 KDKLTTDLKSQLVEQKFVEV----TKQLEDSAFESSDLSQPAQDLGLKVQTTAPFGREGG 433

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
            G    +  +        + +             +   + K      +  L         
Sbjct: 434 EGITANRAVIQAAFSPEVLEEGSNSNTLELDPETVVVVRSKEHLQPQQLPLESVASSIRT 493

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS--IGKAQYLLESDLHPQF 246
               ++     K   +A  + LR  K     ++       +       + +    L   F
Sbjct: 494 QLVKEHATAAAKAKGEALLAGLRDGKIPLAAKQDGRDWKSMEAVTRSQEGVDPQVLQTLF 553

Query: 247 QNLLKKSQN--NTTNPYVTQKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEKHEAE 303
           +      +      +          + +             KA           ++  A 
Sbjct: 554 RMPKPDGKGKPEFASITAADGSFVIVRLNGVNQAAAPTDAEKAQYRRFLASRAGQQDFAA 613

Query: 304 YVKKLRSNAIIHYY 317
           Y  +L S A I  +
Sbjct: 614 YRAQLESKAKIEKF 627


>gi|228957536|ref|ZP_04119288.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228802128|gb|EEM48993.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 285

 Score = 80.9 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/304 (8%), Positives = 76/304 (25%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + ++S       S    T     IT  +  K++             K  
Sbjct: 4   KHIFIITALISILMLSACGQKNGSATVATATDSTITKDNFEKQLK--------DRYGKDM 55

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           + E++ + +  ++ +      +                +  +    F           ++
Sbjct: 56  LYEMMAQDVITKKYKVPDEEVNKEVE-----------KVKKQYGDQFKKVLENYGLKDEE 104

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 105 DFKNQIKFKLAMNEAIKKSITEKDVKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ +             ++ +  +      G   Y     + P+F+    K + 
Sbjct: 145 SDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFNSGTMAPEFETAAYKLNV 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              +NP  +  G   I + DK+ L     +K  +       +        + +++    A
Sbjct: 205 GQISNPVKSSNGYHVIKLTDKKALKPYDEVKDSIRKNLEEERTADPVFSKKLLQEELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|213968838|ref|ZP_03396979.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas syringae pv.
           tomato T1]
 gi|301384116|ref|ZP_07232534.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
           tomato Max13]
 gi|302059522|ref|ZP_07251063.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
           tomato K40]
 gi|302135027|ref|ZP_07261017.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213926441|gb|EEB59995.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas syringae pv.
           tomato T1]
          Length = 627

 Score = 80.9 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 63/194 (32%), Gaps = 6/194 (3%)

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                     F     +   + ++ K+ F  K    + ++ A  QK       +     +
Sbjct: 215 KAHYDQHAKEFMSPEQVVLDYIELKKSSFFDKVTVKDEDLQAAYQKEIANLSEQRRAAHI 274

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL 242
           L     N   N    + ++++ ++   +        ++F+         G   +  +   
Sbjct: 275 LI--EVNDKLNDDQAKAKVEEIQQRLAKGEDFAALAKEFSQDPGSSSKGGDLGFAGKGVY 332

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEK 299
            P F+  L   +++  + P  T  G   I +       +    +LK  LS       +E+
Sbjct: 333 DPAFEEALYALNKDQVSQPVRTDFGWHLIKLLGVEAPSVPTFASLKEKLSNDLKSQLVEQ 392

Query: 300 HEAEYVKKLRSNAI 313
              E  K+L  +A 
Sbjct: 393 KFVEVTKQLEDSAF 406



 Score = 56.6 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/326 (9%), Positives = 82/326 (25%), Gaps = 32/326 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++ +     I +  +   + +    +NGE IT  ++S+ +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEAMFTATSNKQNAAEVNGEDITQNELSQAV 60

Query: 61  ALL-----------------KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            +                          L + A++ LI   L  Q    +  +F    ++
Sbjct: 61  DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAGDARFSFSDAALD 120

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE-ME 162
              +Q              F            Q+   Q +  +++             + 
Sbjct: 121 QQLLQTPEFQVDGKFSADRFDQVIRQLGYSRMQF--RQMLGQEMLIGQVRAGVAGSAFVT 178

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                   +            L + P         V+       +  +   +      + 
Sbjct: 179 DAQVDAFARLEKQTRDFASLTLPADPSAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIEL 238

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY-IAICDKRDLGGE 281
                   +     + + DL   +Q           N    ++     I + DK +    
Sbjct: 239 KKSSFFDKV----TVKDEDLQAAYQK-------EIANLSEQRRAAHILIEVNDKLNDDQA 287

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKK 307
            A    +  +    +     A+   +
Sbjct: 288 KAKVEEIQQRLAKGEDFAALAKEFSQ 313



 Score = 35.4 bits (79), Expect = 9.9,   Method: Composition-based stats.
 Identities = 28/254 (11%), Positives = 67/254 (26%), Gaps = 9/254 (3%)

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             +L      +L+ +   +     +    DS   +    Q A++ GL  +  + F  + G
Sbjct: 378 KEKLSNDLKSQLVEQKFVEV----TKQLEDSAFESSDLTQPAQDLGLKVQTTAPFGREGG 433

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
            G    +  +        + +             +   + K      +  L         
Sbjct: 434 EGLTANRAVIQAAFSPEVLEEGSNSNTLELDPETVLVVRSKEHLQPQQLPLESVASSIRA 493

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS--IGKAQYLLESDLHPQF 246
               ++     K   +A  + LR  K     ++       +       + +    L   F
Sbjct: 494 QLVKEHATAAAKTKGEALLAGLRDGKIPLAAKQDGRDWKSMEAVSRSQEGVDPQVLQALF 553

Query: 247 QNLLKKSQN--NTTNPYVTQKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEKHEAE 303
           +     +++     +          + +             KA           ++  A 
Sbjct: 554 RMPKPVAKDKPEFASITAADGSFVIVRLNGVNQAAAPTDAEKAQYRRFLASRAGQQDFAA 613

Query: 304 YVKKLRSNAIIHYY 317
           Y  +L S A I  +
Sbjct: 614 YRAQLESKAKIEKF 627


>gi|52079482|ref|YP_078273.1| molecular chaperone PrsA [Bacillus licheniformis ATCC 14580]
 gi|52784844|ref|YP_090673.1| hypothetical protein BLi01072 [Bacillus licheniformis ATCC 14580]
 gi|319646731|ref|ZP_08000960.1| PrsA protein [Bacillus sp. BT1B_CT2]
 gi|52002693|gb|AAU22635.1| molecular chaperone PrsA [Bacillus licheniformis ATCC 14580]
 gi|52347346|gb|AAU39980.1| PrsA [Bacillus licheniformis ATCC 14580]
 gi|317391319|gb|EFV72117.1| PrsA protein [Bacillus sp. BT1B_CT2]
          Length = 286

 Score = 80.9 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/304 (10%), Positives = 80/304 (26%), Gaps = 43/304 (14%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +  I     +         S +        IT  D+ + +               
Sbjct: 1   MKKIAIAAITATSVLALSACSGGDSEVVAETKAGNITKEDLYQTLK--------DNAGAD 52

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           A+  L+ + +   + + S    D     Y      +   L  +    F+           
Sbjct: 53  ALNMLVQQKVLDDKYDVSDKEIDKKLNEYKKSMGDQLNQLIDQKGEDFV----------- 101

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
                Q  +  +++          + ++      +K                  +     
Sbjct: 102 ---KEQIKYELLMQKAAKDNIKVTDDDVKEYYDGLKGK---------------IHLSHIL 143

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD--LHPQFQNLLKKS 253
              +K  ++ E+   +  K  +  +++++       G   ++ + D       +      
Sbjct: 144 VKEKKTAEEVEKKLKKGEKFEDLAKEYSTDGTAEKGGDLGWVGKDDNMDKDFVKAAFALK 203

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSN 311
               + P  +Q G   I   ++R  G    +K  L  +    K          + KL  +
Sbjct: 204 TGEISGPVKSQFGYHIIKKDEER--GKYEDMKKELKKEVQEQKQNDQTELQSVIDKLVKD 261

Query: 312 AIIH 315
           A + 
Sbjct: 262 ADLK 265


>gi|163755249|ref|ZP_02162369.1| putative exported peptidyl-prolyl cis-trans isomerase [Kordia
           algicida OT-1]
 gi|161324669|gb|EDP95998.1| putative exported peptidyl-prolyl cis-trans isomerase [Kordia
           algicida OT-1]
          Length = 491

 Score = 80.9 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 87/291 (29%), Gaps = 13/291 (4%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ--KINGELEKIAVQELIVETLKKQE 89
           S         +   +   +I D DI K +  L+ Q   + G  +   + +L+ + L   +
Sbjct: 62  STTKRVKIDGVAAVVGDFIILDSDIDKTLLDLRQQGVSLEGLTKCKLLGKLMEDKLYAHQ 121

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV-- 147
             +  I      +     Q               L    + D    +    +        
Sbjct: 122 AIQDSIEVSPGEIRDRVNQSIEYFSQQIGGMDKLLKFYAMEDEAALRKRLTEITKVQFLT 181

Query: 148 --VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
             +++  +        E+    +K+         +   +  I      ++  V K I+  
Sbjct: 182 QRMQSKVVRDVEITPEEVRQFFEKIPADQRPRIGVELEVSQIIIEPEPSKEAVDKVIQKL 241

Query: 206 EESRLR---LPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNP 260
           ++ +           K   ++         G         L  +F+++     Q   ++P
Sbjct: 242 KDIKAEVEGGSSFGTKAILYSKDRASGRQGGLMPINKRQSLAKEFKDVAFSLQQGEISDP 301

Query: 261 YVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           + T  G   + +   R    ++     +  + T  ++E+   E +  LR+ 
Sbjct: 302 FETDFGWHIVMVEKVRGQERDVRHILLI-PEVTADRLEEARKE-IDTLRTR 350


>gi|298486267|ref|ZP_07004330.1| Peptidyl-prolyl cis-trans isomerase ppiD [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298159274|gb|EFI00332.1| Peptidyl-prolyl cis-trans isomerase ppiD [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 627

 Score = 80.9 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 64/194 (32%), Gaps = 6/194 (3%)

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                     F     +   + ++ K+ F  K    + ++ A  QK       +     +
Sbjct: 215 KAHYDQHAKEFMSPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIANLSEQRRAAHI 274

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL 242
           L     N   N    + +I++ ++   +        ++++         G   Y  +   
Sbjct: 275 LI--EVNDKLNDEQAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKGVY 332

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEK 299
            P F++ L   +++  + P  T  G   I +       +    +LK  L+       +E+
Sbjct: 333 DPAFEDTLYALNKDQVSQPVRTDFGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQ 392

Query: 300 HEAEYVKKLRSNAI 313
              E  K+L  +A 
Sbjct: 393 KFVEVTKQLEDSAF 406



 Score = 55.5 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/327 (8%), Positives = 78/327 (23%), Gaps = 33/327 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++ +     I +  +   + +    +NGE I+  ++S+ +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDISQNELSQAV 60

Query: 61  ALL-----------------KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            +                          L + A++ LI   L  Q    +  +F    ++
Sbjct: 61  DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSDAALD 120

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE-ME 162
              +Q              F            Q+   Q +  +++             + 
Sbjct: 121 QQLLQTPEFQVDGKFSADRFDQVIRQLGYSRLQF--RQMLGQEMLIGQVRAGVAGSAFVT 178

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                   +            L +           V+       +  +   +      + 
Sbjct: 179 DAQVDAFARLEKQTRDFASLTLPADTTAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIEL 238

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY-IAICDKRDLGGE 281
                        +  +  +  +      +      N    ++     I + DK +    
Sbjct: 239 KKSS---------FFDKVQVKDEDLQAAYQK--EIANLSEQRRAAHILIEVNDKLNDEQA 287

Query: 282 IALKAYLSAQNTP-TKIEKHEAEYVKK 307
            A    +  +            EY + 
Sbjct: 288 KAKIEEIQQRLAKGEDFAALAKEYSQD 314



 Score = 36.6 bits (82), Expect = 5.3,   Method: Composition-based stats.
 Identities = 28/254 (11%), Positives = 66/254 (25%), Gaps = 9/254 (3%)

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             +L      +L+ +   +     +    DS   +    Q A++ G+  +  + F  + G
Sbjct: 378 KDKLTTDLKSQLVEQKFVEV----TKQLEDSAFESSDLSQPAQDLGMKVQTTAPFGREGG 433

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
            G    +  +        + +             +   + K      +  L         
Sbjct: 434 EGITANRAVIQAAFSPEVLEEGSNSNTLELDPETVVVVRSKEHLQPQQLPLESVASSIRT 493

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS--IGKAQYLLESDLHPQF 246
               ++     K   +A  + LR  K     ++       +       + +    L   F
Sbjct: 494 QLVKEHATAAAKAKGEALLAGLRDGKIPLAAKQDGRDWKSMEAVTRSQEGVDPQVLQTLF 553

Query: 247 QNLLKKSQN--NTTNPYVTQKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEKHEAE 303
           +      +      +          + +             KA           ++  A 
Sbjct: 554 RMPKPDGKGKPEFASITAADGSFVIVRLNGVNQAAAPTDAEKAQYRRFLASRAGQQDFAA 613

Query: 304 YVKKLRSNAIIHYY 317
           Y  +L SNA I  +
Sbjct: 614 YRAQLESNAKIEKF 627


>gi|304405785|ref|ZP_07387443.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           curdlanolyticus YK9]
 gi|304345028|gb|EFM10864.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           curdlanolyticus YK9]
          Length = 320

 Score = 80.9 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/287 (9%), Positives = 76/287 (26%), Gaps = 34/287 (11%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFD 98
             ++   I G+ IT+ D++K             L +     ++   +  + ++       
Sbjct: 53  EGKVLAIIGGKPITEQDLTKE------------LHRQYGASMLRTMMLHEAVKLEAAAQG 100

Query: 99  SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGN 158
                         T       + + ++        ++ +   + +  +++         
Sbjct: 101 LTVTAEQLSAELARTMEGYGSEAEYYEEMQEQLGLSREDVQADAEYRLLLEQIATRAITV 160

Query: 159 LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
            + +I     +  +       ++            N         D  E           
Sbjct: 161 TDDQIDEYLAEHASEFTGVTELKLRWILTGTRSDAN---------DVIEKLSDGEDFALM 211

Query: 219 LEKFASKI-HDVSIGKAQYLLESDL---HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICD 274
            + ++         G   Y+ ++D                   T P  T+ G   I + +
Sbjct: 212 AKTYSIDAFTSEQGGDLGYIEDNDPLVEAALLDATHSLDVGQVTGPVKTEGGYAIIRLDE 271

Query: 275 KRDLGGEI--ALKAYLSAQNTPTKI-------EKHEAEYVKKLRSNA 312
           +R+  G      +     Q +  +        ++   +Y +  R+ A
Sbjct: 272 RREREGMALGQRREEARRQVSLEQARPLPEVEDELLRKYGEDKRNPA 318


>gi|257066380|ref|YP_003152636.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaerococcus
           prevotii DSM 20548]
 gi|256798260|gb|ACV28915.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaerococcus
           prevotii DSM 20548]
          Length = 249

 Score = 80.9 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/287 (11%), Positives = 89/287 (31%), Gaps = 45/287 (15%)

Query: 36  WAMSSRIRTTINGEVITDGDISKRIALL--KLQKINGELEKIAVQELIVETLKKQEIEKS 93
              ++++   +NG+ I   D+ + +  +  + +  + E  KI   E+I + +  ++    
Sbjct: 2   TEDNNKLLAEVNGKKIYTSDVYQLMNSIEDRERFNSEEGIKILADEMINQEILLKDAYDE 61

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
           G+  D   V    +         A                                    
Sbjct: 62  GLDQDEEFVKELDLVKTNMLKNYAMH-------------------------------KIF 90

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
            +    + EI    ++ K           +L+      +++    +K   + E    +  
Sbjct: 91  EEVNINDDEIKKYYEENKETINPP-----ILYEASHILVKDLETAEKVRGEIE----KGL 141

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAI 272
              +  +K++      + G      +  +  +FQ           + P  +Q G   I +
Sbjct: 142 SFEDAAKKYSIDPSKENGGSLGKFPKGVMVKEFQEGLDAIEVGEISAPVKSQFGYHLIKL 201

Query: 273 CDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            +K   +      +K+ +  +    K ++   E + K++ +  +  Y
Sbjct: 202 TNKENVETPKFEEIKSQVGQRLIMAKRQEAYLEKLGKIKKDVEVKKY 248


>gi|229102919|ref|ZP_04233612.1| Foldase protein prsA 1 [Bacillus cereus Rock3-28]
 gi|228680505|gb|EEL34689.1| Foldase protein prsA 1 [Bacillus cereus Rock3-28]
          Length = 293

 Score = 80.9 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/318 (9%), Positives = 88/318 (27%), Gaps = 48/318 (15%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALL 63
           +  + S+  +L      L       +++  +   S  + T  +    +T+ ++SK +   
Sbjct: 1   MHNNKSEVFELKKKKLFLGTIISCVVLALSACGSSDNVVTSKVGN--VTEKELSKELK-- 56

Query: 64  KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
                  +  +  + ++++      + + S                     +      + 
Sbjct: 57  ------QKYGESTLYQMVLSKALLDKYKVSDEEVTKQVKE-------AKDKMGDNFKETL 103

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                  ++  K+ +  +  +   +K     K      +       +             
Sbjct: 104 EKIGLKNEDELKEKMKPEIAFEKAIKATVTEKDVKDNYKPEMKVSHILVKD--------- 154

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL 242
                          +K  K+ +E            ++++         G+         
Sbjct: 155 ---------------EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEIAGFGPGQT 199

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE 301
             +F+    K +    + P  T  G   I + DK++L     +K  +       +++   
Sbjct: 200 VKEFEEAAYKLNAGQVSEPVKTSYGYHIIKVTDKKELKPFEEVKDKIRKDLEQQRLQDTT 259

Query: 302 AEY----VKKLRSNAIIH 315
            ++    V  L  +A I 
Sbjct: 260 GKWKQQVVNDLLKDADIK 277


>gi|28870877|ref|NP_793496.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28854126|gb|AAO57191.1| peptidyl-prolyl cis-trans isomerase D, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|331019234|gb|EGH99290.1| periplasmic folding chaperone [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 627

 Score = 80.9 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 63/194 (32%), Gaps = 6/194 (3%)

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                     F     +   + ++ K+ F  K    + ++ A  QK       +     +
Sbjct: 215 KAHYDQHAKEFMSPEQVVLDYIELKKSSFFDKVTVKDEDLQAAYQKEIANLSEQRRAAHI 274

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL 242
           L     N   N    + ++++ ++   +        ++F+         G   +  +   
Sbjct: 275 LI--EVNDKLNDDQAKAKVEEIQQRLAKGEDFAALAKEFSQDPGSSSKGGDLGFAGKGVY 332

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEK 299
            P F+  L   +++  + P  T  G   I +       +    +LK  LS       +E+
Sbjct: 333 DPAFEEALYALNKDQVSQPVRTDFGWHLIKLLGVEAPSVPTFASLKEKLSNDLKSQLVEQ 392

Query: 300 HEAEYVKKLRSNAI 313
              E  K+L  +A 
Sbjct: 393 KFVEVTKQLEDSAF 406



 Score = 56.6 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/326 (9%), Positives = 82/326 (25%), Gaps = 32/326 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++ +     I +  +   + +    +NGE IT  ++S+ +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEAMFTATSNKQNAAEVNGEDITQNELSQAV 60

Query: 61  ALL-----------------KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            +                          L + A++ LI   L  Q    +  +F    ++
Sbjct: 61  DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAGDARFSFSDAALD 120

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE-ME 162
              +Q              F            Q+   Q +  +++             + 
Sbjct: 121 QQLLQTPEFQVDGKFSADRFDQVIRQLGYSRMQF--RQMLGQEMLIGQVRAGVAGSAFVT 178

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                   +            L + P         V+       +  +   +      + 
Sbjct: 179 DAQVDAFARLEKQTRDFASLTLPADPSAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIEL 238

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY-IAICDKRDLGGE 281
                   +     + + DL   +Q           N    ++     I + DK +    
Sbjct: 239 KKSSFFDKV----TVKDEDLQAAYQK-------EIANLSEQRRAAHILIEVNDKLNDDQA 287

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKK 307
            A    +  +    +     A+   +
Sbjct: 288 KAKVEEIQQRLAKGEDFAALAKEFSQ 313


>gi|295688302|ref|YP_003591995.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter segnis
           ATCC 21756]
 gi|295430205|gb|ADG09377.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter segnis
           ATCC 21756]
          Length = 329

 Score = 80.9 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 72/291 (24%), Gaps = 55/291 (18%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE------KIAVQELIVETLKKQ 88
                      +NG+VI   D+ +      L      L+      +  + E+I + L   
Sbjct: 43  PPEPGDTAVARVNGQVIWASDVKREAVAQGLISEGEPLDISSEVFRQRLDEVIDQKLLAA 102

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
           E  K  I  D                                          + +   +V
Sbjct: 103 EAMKRKIDKDPMAQRRL------------------------------AAARERILGDMLV 132

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
           +           +     +Q+  +    E   R ++                     ++ 
Sbjct: 133 EGVVEKAVTEDAIRKLYAEQQKLSKRSEEIRARQIIVGSQAEAES-----------VKKL 181

Query: 209 RLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKG 266
                       + ++      + G   Y     +   +        +     P+  + G
Sbjct: 182 LATGASFDALAMERSTDQATRFNGGDLGYFTLDVMPEPYGVALKDAQKGALVGPFAAEGG 241

Query: 267 VEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
              + + DKR  +     A +  +    T  +      + ++KLR +A + 
Sbjct: 242 WVLVRVEDKRVEEPITLEAARPQIVRFLTYDQ----VRDILEKLRGSAKVE 288


>gi|206968099|ref|ZP_03229055.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus AH1134]
 gi|229177678|ref|ZP_04305055.1| Foldase protein prsA 2 [Bacillus cereus 172560W]
 gi|206737019|gb|EDZ54166.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus AH1134]
 gi|228605868|gb|EEK63312.1| Foldase protein prsA 2 [Bacillus cereus 172560W]
          Length = 285

 Score = 80.9 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/304 (9%), Positives = 77/304 (25%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + ++S       S    T     IT  +  K++             K  
Sbjct: 4   KHIFIITALISILMLSACEQKNGSATVATATDSTITKDNFEKQLK--------DRYGKDM 55

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           + E++ + +  ++ +      +                +  +    F           ++
Sbjct: 56  LYEMMAQDVITKKYKVPDEEVNKEVE-----------KVKKQYGDQFKKVLENNGLKDEE 104

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 105 DFKNQIKFKLAMNEAIKKSITEKDVKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ +             ++ +  +      G   Y     + P+F+    K + 
Sbjct: 145 SDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFNSGTMAPEFETAAYKLNV 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              +NP  +  G   I + DK+DL     +K  +       +        + +++    A
Sbjct: 205 GQISNPVKSSNGYHVIKLTDKKDLKPYDEVKNSIRKNLEEERTADPVFSKKLLQEELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|119896837|ref|YP_932050.1| peptidylprolyl isomerase [Azoarcus sp. BH72]
 gi|119669250|emb|CAL93163.1| probable peptidylprolyl isomerase [Azoarcus sp. BH72]
          Length = 285

 Score = 80.9 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/162 (12%), Positives = 45/162 (27%), Gaps = 5/162 (3%)

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ--KRIKDAEESRLRL 212
                E EI       +        +R +L +I D    N+  V   +  +  +    + 
Sbjct: 115 SVDETEAEIFYYAHVDRFRAPERRTVRHILVTINDAYPDNRREVASRRIHEICKRLNNKP 174

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYIA 271
            +   +  K +     ++ G    L    L       L +      +    ++ G   + 
Sbjct: 175 ERFEEQAMKHSECPTALNGGLLGELPRGTLYPELDAVLFEMKAGQLSGVVESEIGFHLLR 234

Query: 272 ICDKRDLGG--EIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
               +         +   L  Q T  +  K    ++ +L   
Sbjct: 235 CDAIQPERVLSFAEVSESLRQQLTAERGRKDARRWLTELLKR 276


>gi|71737764|ref|YP_273939.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71558317|gb|AAZ37528.1| peptidyl-prolyl cis-trans isomerase D, putative [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 627

 Score = 80.9 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 64/194 (32%), Gaps = 6/194 (3%)

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                     F     +   + ++ K+ F  K    + ++ A  QK       +     +
Sbjct: 215 KAHYDQHAKEFMSPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIANLSEQRRAAHI 274

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL 242
           L     N   N    + +I++ ++   +        ++++         G   Y  +   
Sbjct: 275 LI--EVNDKLNDEQAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKGVY 332

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEK 299
            P F++ L   +++  + P  T  G   I +       +    +LK  L+       +E+
Sbjct: 333 DPAFEDTLYALNKDQVSQPVRTDFGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQ 392

Query: 300 HEAEYVKKLRSNAI 313
              E  K+L  +A 
Sbjct: 393 KFVEVTKQLEDSAF 406



 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/327 (8%), Positives = 78/327 (23%), Gaps = 33/327 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++ +     I +  +   + +    +NGE I+  ++S+ +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDISQNELSQAV 60

Query: 61  ALL-----------------KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            +                          L + A++ LI   L  Q    +  +F    ++
Sbjct: 61  DMQRRQLAQQLAQQLGKDFDSAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSDAALD 120

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE-ME 162
              +Q              F            Q+   Q +  +++             + 
Sbjct: 121 QQLLQTPEFQVDGKFSADRFDQVIRQLGYSRLQF--RQMLGQEMLIGQVRAGVAGSAFVT 178

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                   +            L +           V+       +  +   +      + 
Sbjct: 179 DAQVDAFARLEKQTRDFASLTLPADTTAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIEL 238

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY-IAICDKRDLGGE 281
                        +  +  +  +      +      N    ++     I + DK +    
Sbjct: 239 KKSS---------FFDKVQVKDEDLQAAYQK--EIANLSEQRRAAHILIEVNDKLNDEQA 287

Query: 282 IALKAYLSAQNTP-TKIEKHEAEYVKK 307
            A    +  +            EY + 
Sbjct: 288 KAKIEEIQQRLAKGEDFAALAKEYSQD 314



 Score = 36.2 bits (81), Expect = 6.7,   Method: Composition-based stats.
 Identities = 28/254 (11%), Positives = 65/254 (25%), Gaps = 9/254 (3%)

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             +L      +L+ +   +     +    DS   +    Q A++ GL  +  + F  + G
Sbjct: 378 KDKLTTDLKSQLVEQKFVEV----TKQLEDSAFESSDLSQPAQDLGLKVQTTAPFGREGG 433

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
            G    +  +        + +             +   + K      +  L         
Sbjct: 434 EGITANRAVIQAAFSPEVLEEGSNSNTLELDPETVVVVRSKEHLQPQQLPLESVASSIRT 493

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS--IGKAQYLLESDLHPQF 246
               ++     K   +A  + LR  K     ++       +       + +    L   F
Sbjct: 494 QLVKEHATAAAKAKGEALLAGLRDGKIPLAAKQDGRDWKSMEAVTRSQEGVDPQVLQTLF 553

Query: 247 QNLLKKSQN--NTTNPYVTQKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEKHEAE 303
           +      +      +          + +             KA           ++  A 
Sbjct: 554 RMPKPDGKGKPEFASITAADGSFVIVRLNGVNQAAAPTDAEKAQYRRFLASRAGQQDFAA 613

Query: 304 YVKKLRSNAIIHYY 317
           Y  +L S A I  +
Sbjct: 614 YRAQLESKAKIEKF 627


>gi|86150833|ref|ZP_01069049.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315124743|ref|YP_004066747.1| hypothetical protein ICDCCJ07001_1237 [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85842003|gb|EAQ59249.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315018465|gb|ADT66558.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 271

 Score = 80.9 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/296 (11%), Positives = 78/296 (26%), Gaps = 32/296 (10%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           I+       S  S    + I   ++ E IT  DI + +  LK+          A+  LI 
Sbjct: 4   ILLSFAFFASLASANTINAIAVVVDKEPITTYDIDQTMKALKID------RNKALGVLIN 57

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           E ++  ++++ GI  +   ++    +       +   F + L  +      F+       
Sbjct: 58  EKMEISQMKQLGIVVNDLELDDAINKMLAQNKTTLNAFKANLKSKNQSYEQFRANFKKDL 117

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
               + +    +   +   +      +        Y        + +N    +     + 
Sbjct: 118 EKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYLSNNPQTLENIKNTKK 177

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYV 262
              +     L                           +        L +      +    
Sbjct: 178 TILKPQNASLN------------------------TSNADPRLLGLLSQIPVGGFSPVLN 213

Query: 263 TQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + G E   +  K          +K  +       + +    +Y  KLRS   I Y
Sbjct: 214 GKNGYELYEVKSKDGAQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKINIEY 269


>gi|86149973|ref|ZP_01068201.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|148926278|ref|ZP_01809963.1| possible periplasmic protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|205356305|ref|ZP_03223071.1| possible periplasmic protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|85839419|gb|EAQ56680.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|145845449|gb|EDK22542.1| possible periplasmic protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|205345910|gb|EDZ32547.1| possible periplasmic protein [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 271

 Score = 80.9 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/296 (11%), Positives = 78/296 (26%), Gaps = 32/296 (10%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           I+       S  S    + I   ++ E IT  DI + +  LK+          A+  LI 
Sbjct: 4   ILLSFAFFASLASANTINAIAVVVDKEPITTYDIDQTMKALKID------RNKALGVLIN 57

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           E ++  ++++ GI  +   ++    +       +   F + L  +      F+       
Sbjct: 58  EKMEISQMKQLGIVVNDLELDDAINKMLAQNKTTLNAFKANLKSKNQSYEQFRANFKKDL 117

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
               + +    +   +   +      +        Y        + +N    +     + 
Sbjct: 118 EKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYLSNNPQTLENIKNTKK 177

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYV 262
              +     L                           +        L +      +    
Sbjct: 178 TILKPQNASLN------------------------TSNADPRLLGLLSQIPVGGFSPVLN 213

Query: 263 TQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + G E   +  +          +K  +       + +    +Y  KLRS   I Y
Sbjct: 214 GKNGYELYEVKSRDGAQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKINIEY 269


>gi|237749474|ref|ZP_04579954.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oxalobacter
           formigenes OXCC13]
 gi|229380836|gb|EEO30927.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oxalobacter
           formigenes OXCC13]
          Length = 256

 Score = 80.9 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/300 (14%), Positives = 82/300 (27%), Gaps = 49/300 (16%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--ELEKIAVQ 78
           +++    +  VS+ ++A +      +NG+ I      + +  +  Q      EL      
Sbjct: 1   MVLSTLSLSFVSFAAFAQN---VAVVNGKAIPSSYSDEAVKEVVKQGGKDTPELRNNIKT 57

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
           +LIV  +  QE EK  +                                        +  
Sbjct: 58  QLIVGEVLLQEAEKQNLASTDAVKKQ------------------------------MEMA 87

Query: 139 AIQSIWPDVVKNDFMLK-YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGF 197
               +   +  N        + E++   ++         EY ++ +L             
Sbjct: 88  RRSILIDTLRNNYVTKNPVSDNEVKAEYDRLVKMQKGQTEYHVKHILVKDKATADSIIKQ 147

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNN 256
           V K     E+            EK   K      G   +    DL   F + +    +  
Sbjct: 148 VSKNPASFEKLAQ---------EKSLDKASAARGGDMGWATAGDLVKPFSDAMVSLKKGQ 198

Query: 257 TTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            +  P  T+ G   I + D      +I     +  +   +   +   EY   L   A I 
Sbjct: 199 VSKTPVQTEFGYHIIKVVD--SQKVKIPTYEQIKPKLKASMQYRKWQEYEMGLMKEAKIQ 256


>gi|229115799|ref|ZP_04245201.1| Foldase protein prsA 1 [Bacillus cereus Rock1-3]
 gi|228667682|gb|EEL23122.1| Foldase protein prsA 1 [Bacillus cereus Rock1-3]
          Length = 293

 Score = 80.9 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/318 (9%), Positives = 87/318 (27%), Gaps = 48/318 (15%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALL 63
           +  + S+  +L      L       +++  +   S  + T  +    +T+ ++SK +   
Sbjct: 1   MHNNKSEVFELKKKKLFLGTIISCVVLALSACGSSDNVVTSKVGN--VTEKELSKELK-- 56

Query: 64  KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
                  +  +  + ++++      +          +              +      + 
Sbjct: 57  ------QKYGESTLYQMVLSKALLDKY-------KVSDEEATKQVKEAKDKMGDNFKETL 103

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                  ++  K+ +  +  +   +K     K      +       +             
Sbjct: 104 EKLGLKNEDELKEKMKPEIAFEKAIKATVTEKDVKDNYKPEMKVSHILVKD--------- 154

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL 242
                          +K  K+ +E            ++++         G+         
Sbjct: 155 ---------------EKTAKEVKEKVNNGEDFATLAKQYSEDTGSKEQGGEIAGFGPGQT 199

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE 301
             +F+    K +    + P  T  G   I + DK++L     +K  +       +++   
Sbjct: 200 VKEFEEAAYKLNAGQVSEPVKTSYGYHIIKVTDKKELKPFEEVKDKIRKDLEQQRLQDTT 259

Query: 302 AEY----VKKLRSNAIIH 315
            ++    V  L  +A I 
Sbjct: 260 GKWKQQVVNDLLKDADIK 277


>gi|281421754|ref|ZP_06252753.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Prevotella copri
           DSM 18205]
 gi|281404249|gb|EFB34929.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Prevotella copri
           DSM 18205]
          Length = 484

 Score = 80.9 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/288 (10%), Positives = 82/288 (28%), Gaps = 17/288 (5%)

Query: 33  YKSWAMSSRIRTTINGEVITDGDIS--KRIALLKLQKINGELEKIAVQELIVETLKKQEI 90
               ++   +   +  E I   D+   +  A  +  K  G+ +    +++ V+ L   + 
Sbjct: 52  INEGSVVDEVIWVVGDEAILKSDVEVTRLQAEAEGIKYTGDPDCSIPEQIAVQKLFLHQA 111

Query: 91  EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK- 149
               I    + V     +   +            + +       +Q +        +++ 
Sbjct: 112 AIDSIEVSESEVMNGIDEQINSWVSMIGSREKLEEYRKQSITQMRQQMHDDFKNQQLIQK 171

Query: 150 --NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
              + +        ++    + +   ++        +  +          + +      E
Sbjct: 172 MKQELVKDIKVSPAQVRKYFKDLPADSIPFVPTEVEVEILTMQPRIPLEEINRVKNQLRE 231

Query: 208 SRLRLPKDCNKLEKFASKIHDVSI-----GKAQYLLESDLHPQFQNLLKKSQN--NTTNP 260
              R+ K        A    +        G+  Y+    L P F N+     +    +  
Sbjct: 232 FTDRVNKGETSFATLARLYSEDPGSARMGGEMDYIGRGMLDPAFANVAFNLTDPKKISKI 291

Query: 261 YVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
             ++ G   I + DKR   G+     ++     P   +    + + +L
Sbjct: 292 VESEFGYHIIQLIDKR---GDKIKCRHIL--LKPQVSQDAIDKSIGRL 334


>gi|83815316|ref|YP_446773.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Salinibacter ruber DSM 13855]
 gi|83756710|gb|ABC44823.1| PPIC-type PPIASE domain protein [Salinibacter ruber DSM 13855]
          Length = 342

 Score = 80.9 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 15/265 (5%), Positives = 60/265 (22%), Gaps = 7/265 (2%)

Query: 53  DGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
              +   +      + + +  +   ++LI    ++  +       +              
Sbjct: 69  QQQVRMSMKRQAPSQQSEDQMQETHRQLIRGFARQHALRGEAKAQNLEVDPTQVNARLEK 128

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
                E    F  +    +       ++ +      +    +     E          + 
Sbjct: 129 LKQRYESEEQFQKQLARNNMTVDSVRSLLADQFRQQQLQRQMAENYEEPSSDDVTAYSEK 188

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
                     +       + +     +      + +++          + +        G
Sbjct: 189 NRRIRAQHILIKAGENAPESEVDSARKAAAALVDSAKMEDVDFAELARRHSQGPSAQKGG 248

Query: 233 KAQYLLESDLHPQFQNLLK--KSQNNTT-NPYVTQKGVEYIAICDKRDLGGEIALKAYLS 289
              +     +  +F           +    P  T+ G   I + +  +            
Sbjct: 249 DLGFFTRDRMVDKFAEAAYALSDSGDVAPEPVRTRFGFHVIRLTNAGEPMDTTKA----R 304

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAII 314
            Q T  + ++   + +  L  +A +
Sbjct: 305 KQMTKERRQQAVEDQINALLEDATV 329


>gi|229096816|ref|ZP_04227786.1| Foldase protein prsA 1 [Bacillus cereus Rock3-29]
 gi|228686658|gb|EEL40566.1| Foldase protein prsA 1 [Bacillus cereus Rock3-29]
          Length = 293

 Score = 80.9 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/318 (9%), Positives = 87/318 (27%), Gaps = 48/318 (15%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALL 63
           +  + S+  +L      L       +++  +   S  + T  +    +T+ ++SK +   
Sbjct: 1   MHNNKSEVFELKKKKLFLGTIISCVVLALSACGSSDNVVTSKVGN--VTEKELSKELK-- 56

Query: 64  KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
                  +  +  + ++++      +          +              +      + 
Sbjct: 57  ------QKYGESTLYQMVLSKALLDKY-------KVSDEEATKQVKEAKDKMGDNFKETL 103

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                  ++  K+ +  +  +   +K     K      +       +             
Sbjct: 104 EKLGLKNEDELKEKMKPEIAFEKAIKATVTEKDVKDNYKPEMKVSHILVKD--------- 154

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL 242
                          +K  K+ +E            ++++         G+         
Sbjct: 155 ---------------EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEIAGFGPGQT 199

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE 301
             +F+    K +    + P  T  G   I + DK++L     +K  +       +++   
Sbjct: 200 VKEFEEAAYKLNAGQVSEPVKTSYGYHIIKVTDKKELKPFEEVKDKIRKDLEQQRLQDTT 259

Query: 302 AEY----VKKLRSNAIIH 315
            ++    V  L  +A I 
Sbjct: 260 GKWKQQVVNDLLKDADIK 277


>gi|148653423|ref|YP_001280516.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp.
           PRwf-1]
 gi|148572507|gb|ABQ94566.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp.
           PRwf-1]
          Length = 624

 Score = 80.9 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/399 (11%), Positives = 101/399 (25%), Gaps = 87/399 (21%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
              +   L  +   +     L    I+ + SY S A S      +  + I+  +    + 
Sbjct: 1   MESIRNFLQSWPGRIFLMLCLSPLVILGLESYFSGASSVNEVAKVGDQTISRAEYQDGLN 60

Query: 62  LLKLQK----------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
             + +               L    ++ LI   L + + +  G+      +N   +Q  +
Sbjct: 61  GRRNELLQGGVEASAINTQALNSEVLKGLINRALLRNQTDHLGMHVSDAAINNLLLQDPQ 120

Query: 112 ----NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------------- 148
               N   S + F+  L +QGI  +        Q     +                    
Sbjct: 121 YLDENGQFSNDRFAFALQQQGITKDQLFAQYRQQLNLMQLYASVAQTAVYPESQIHDLLA 180

Query: 149 --------------KNDFMLKYGNLEMEIPANKQKMKNITVREYL--------------- 179
                            F  K    + EI     + K+      +               
Sbjct: 181 LQLETRDVWVYRLPWEQFKDKVSVSDKEISDYYNENKSKLNSRAMVDLAYVSLDPSKLPV 240

Query: 180 ---IRTVLFSIPDNKLQNQG---------------FVQKRIKDAEESRLRLPKDCNKLEK 221
               +  L +  D+                       +  ++  E+   +        ++
Sbjct: 241 EKVTQAELQAQYDDYKARFVGNSKQKVSQILVTGSKAEATMQQIEQRLKKGESFAAIAKE 300

Query: 222 FASKI-HDVSIGKAQYLLESDLH----PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK- 275
            +         G                  Q L    +   + P  T  G +   + DK 
Sbjct: 301 LSEDPVSAAKGGDIGTFNADAFGADGQKVAQALSGLEKGEVSAPVKTSFGYQLFKVTDKS 360

Query: 276 -RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
              +    +++  L+AQ    K E+  A+ +  +   A 
Sbjct: 361 GDSVPSLESMRDELTAQAQRQKREQLIADKITSINDMAT 399


>gi|308271396|emb|CBX28004.1| hypothetical protein N47_G33280 [uncultured Desulfobacterium sp.]
          Length = 332

 Score = 80.9 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 54/333 (16%), Positives = 122/333 (36%), Gaps = 20/333 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M SK  T L++   ++  + +LI+             +  R+   +N +VIT  D+    
Sbjct: 1   MKSKFTTYLNN---IVMIFILLILQAGFIYDKPCGAEVVDRVVAVVNDDVITLSDLEVAT 57

Query: 61  ALLKLQKING------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
                +  +             ++ +  + +LI   L  QEI+K GI+ +   ++    +
Sbjct: 58  RAYTEKIKSAGYGFEEEHAMLFKMREDMLDQLINRKLTDQEIKKYGISTNDKEIDNSIER 117

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
                 L+ E+  + + K G+  + F+  +    +   V+  +   K    + +  A   
Sbjct: 118 IKEAKYLTDEELRNMVTKDGMTFDDFRDAIKENILRSKVLDIEVKSKIVITKEDTKAYYD 177

Query: 169 KMKNIT--VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
             K+      +Y +  ++         +       + +   ++L+  +   ++ K +++ 
Sbjct: 178 SHKSDYMPQNKYHLFNIIIKTNSEADGDDKHEAMSVMEKIYAKLKQGQPFEEVSKDSAES 237

Query: 227 HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK--RDLGGEIA 283
             V      Y    +L PQ Q+ +K   Q   T    T  G + I I D   +       
Sbjct: 238 SGVENSDLGYFKADELSPQIQDAIKNLKQKEFTKILETDLGYQIIYIKDIEVKPGKSLDE 297

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             A +        I+K+   ++++LR  + I  
Sbjct: 298 AAAGIQGILFNDIIDKNFKLWMEQLRKKSYIKI 330


>gi|77458729|ref|YP_348235.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           fluorescens Pf0-1]
 gi|77382732|gb|ABA74245.1| putative peptidylprolyl isomerase [Pseudomonas fluorescens Pf0-1]
          Length = 310

 Score = 80.9 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/285 (9%), Positives = 82/285 (28%), Gaps = 33/285 (11%)

Query: 36  WAMSSRIRTTINGEVITDGDISKRIALLKLQKING-ELEKIAVQELIVETLKKQEIEKSG 94
            A S      +  + ++  ++   +A +  Q        + A++  I   L ++ + +  
Sbjct: 36  AANSGPAVARLGNQQVSPEELQALLAAVPPQTREQLRGNREALERWIRSRLAEKAVLEQA 95

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN--DF 152
                        Q                                Q ++ D +++    
Sbjct: 96  DAQGWAQRPDVVRQTRA--------------------------ATEQIVFRDYLQSVSQV 129

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
              Y +      A      N         + +F   +     +   ++  + +++++   
Sbjct: 130 PADYPSAAELQQAYDAGKANWQTPALYRVSQIFLGVNEPQNLEAVRKQATELSKKAQATS 189

Query: 213 PKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                  ++F+   +     G         L P+ + ++ +      ++P  +  G   I
Sbjct: 190 ADFAGLAKEFSQDRLTAERGGDTGLQPLQQLVPEVRGVVARLKVGAVSDPVQSSGGFHVI 249

Query: 271 AICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            + +++         L+  L+      + E+    Y+  + + A 
Sbjct: 250 KLTEQQPARTATLDELRDQLTQALRAQRQEQIAQAYLDGMLNTAT 294


>gi|221135500|ref|ZP_03561803.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Glaciecola sp.
           HTCC2999]
          Length = 626

 Score = 80.9 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/396 (7%), Positives = 98/396 (24%), Gaps = 96/396 (24%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   L     ++    +++ F    + SY + +        +NGE I+   + +  
Sbjct: 1   MLERMREGLQGPWAMIIVALIVLSFVFAGVGSYLA-SPVDTAAAKVNGEDISARALDQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +  +                    +  ++ L+ + L +Q+ +  G+      +  
Sbjct: 60  QNERARLESQFGEGISSLFANPEYLANFRQGILERLVADKLVEQKAQALGLRVSDTQIKD 119

Query: 105 FFVQHAR-------NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV--------- 148
             +           N             +     N+ +  +  + +   ++         
Sbjct: 120 TILSMPEFQVGGVFNNDRYLAVLRQAGFQVDDFRNYMRNTMTKEQLSRALLATDFVVPNE 179

Query: 149 --------------------KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV----- 183
                                 +F       +++I    Q   +    +  +        
Sbjct: 180 VITQLNLGRQTRDVKYATIPTANFADTIELSDLDITNYYQTNIDTYDTQEQVSIEYVELK 239

Query: 184 --------------LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL---------- 219
                         +       + N     +R                +           
Sbjct: 240 VSDLMDGVNATDAQIEEYYQFNIANYRTEAQRRVSHILIESGDDTAAAEAKIAEVQAKLN 299

Query: 220 ---------EKFASKI-HDVSIGKAQYLLESDLHPQFQNLL--KKSQNNTTNPYVTQKGV 267
                    + ++       + G  +++   DL P F   +   ++  + ++   T  G 
Sbjct: 300 AGEDFAELAKTYSDDTFSAENGGDLEFITIGDLDPAFDEAVLALENVGDVSDIVATDFGF 359

Query: 268 EYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHE 301
             I + D    ++   + +K  ++         +  
Sbjct: 360 HLITLTDFTPAEVTPFVDVKDEIAEAVKLEIATEAF 395


>gi|57238339|ref|YP_179467.1| hypothetical protein CJE1481 [Campylobacter jejuni RM1221]
 gi|57167143|gb|AAW35922.1| conserved hypothetical protein [Campylobacter jejuni RM1221]
 gi|315058774|gb|ADT73103.1| Possible periplasmic protein [Campylobacter jejuni subsp. jejuni
           S3]
          Length = 271

 Score = 80.9 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/296 (11%), Positives = 79/296 (26%), Gaps = 32/296 (10%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           I+       S  S    + I   ++ E IT  DI + + +LK+          A+  LI 
Sbjct: 4   ILLSFAFFASLASANTINAIAVVVDKEPITTYDIDQTMKVLKID------RNKALGVLIN 57

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           E ++  ++++ GI  +   ++    +       +   F + L  +      F+       
Sbjct: 58  EKMEISQMKQLGIVVNDLELDDAINKMLAQNKTTLNAFKANLKSKNQSYEQFRANFKKDL 117

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
               + +    +   +   +      +        Y        + +N    +     + 
Sbjct: 118 EKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYLSNNPQTLENIKNTKK 177

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYV 262
              +     L                           +        L +      +    
Sbjct: 178 TILKPQNASLN------------------------TSNADPRLLGLLSQIPVGGFSPVLN 213

Query: 263 TQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + G E   +  +          +K  +       + +    +Y  KLRS   I Y
Sbjct: 214 GKNGYELYEVKSRDGAQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKINIEY 269


>gi|218889849|ref|YP_002438713.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Pseudomonas aeruginosa LESB58]
 gi|218770072|emb|CAW25834.1| probable peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Pseudomonas aeruginosa LESB58]
          Length = 272

 Score = 80.5 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 67/183 (36%), Gaps = 5/183 (2%)

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI-RTVLFSIPDNKLQNQGFV 198
            ++    +++ +  +   + +            +     L  R VL +   + L+ +   
Sbjct: 79  EEARIRQLLEEEVQVPEADEDACRTWYAANPGRLLGPWRLQLRHVLLACAPDDLEGRETA 138

Query: 199 QKRIKDAEESRLRLPKDC-NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT 257
           +K+  +  +     P+   +   +F++     S G   ++      P+F+  L +     
Sbjct: 139 RKQAAELLDELRGHPERFVDLARRFSACPSKESGGDLGWIEPGQTVPEFEKRLLRRAPGL 198

Query: 258 TN-PYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              P  ++ G+  + +  +   +     A +A ++A      +++   +Y+  L  +A I
Sbjct: 199 LEHPLESRYGLHVVELLAREGGEPLDFDAARAQIAAHLQAQVLQRAVGQYIGVLAGDACI 258

Query: 315 HYY 317
             +
Sbjct: 259 EGF 261


>gi|2765458|emb|CAA75544.1| NifM protein [Pseudomonas aeruginosa PAO1]
          Length = 250

 Score = 80.5 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 67/183 (36%), Gaps = 5/183 (2%)

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI-RTVLFSIPDNKLQNQGFV 198
            ++    +++ +  +   + +            +     L  R VL +   + L+ +   
Sbjct: 57  EEARIRQLLEEEVQVPEADEDACRTWYAANPGRLLGPWRLQLRHVLLACAPDDLEGRETA 116

Query: 199 QKRIKDAEESRLRLPKDC-NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT 257
           +K+  +  +     P+   +   +F++     S G   ++      P+F+  L +     
Sbjct: 117 RKQAAELLDELRGHPERFVDLARRFSACPSKESGGDLGWIEPGQTVPEFEKRLLRRAPGL 176

Query: 258 TN-PYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              P  ++ G+  + +  +   +     A +A ++A      +++   +Y+  L  +A I
Sbjct: 177 LEHPLESRYGLHVVELLAREGGEPLDFDAARAQIAAHLQAQVLQRAVGQYIGVLAGDACI 236

Query: 315 HYY 317
             +
Sbjct: 237 EGF 239


>gi|52143135|ref|YP_083692.1| peptidylprolyl isomerase [Bacillus cereus E33L]
 gi|51976604|gb|AAU18154.1| protein export protein [Bacillus cereus E33L]
          Length = 283

 Score = 80.5 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/308 (9%), Positives = 83/308 (26%), Gaps = 48/308 (15%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKINGELE 73
           +      L       +++  +   S  + T  +    IT+ ++SK +          +  
Sbjct: 1   MKKKKLFLGTIISCVVLALSACGSSDNVVTSKVGN--ITEKELSKELR--------QKYG 50

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           +  + ++++      + + S                     +     S+        ++ 
Sbjct: 51  ESTLYQMVLSKALLDKYKVSDEEAKKQVEE-------AKDKMGDNFKSTLEQVGLKNEDE 103

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
            K+ +  +  +   +K     K      +       +                       
Sbjct: 104 LKEKMKPEIAFEKAIKATVTEKDVKDNYKPEMKVSHILIKD------------------- 144

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK 252
                +K  K+ +E            ++++         G+           +F+    K
Sbjct: 145 -----EKTAKEVKEKVSNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYK 199

Query: 253 -SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY----VKK 307
                 + P  T  G   I + DK++L     +K  +       +++    ++    V  
Sbjct: 200 LDAGQVSEPVKTTYGYHIIKVTDKKELKPYDEVKDQIRKDLEQQRLQDTTGKWKQQVVND 259

Query: 308 LRSNAIIH 315
           L  +A I 
Sbjct: 260 LLKDADIK 267


>gi|15599066|ref|NP_252560.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Pseudomonas
           aeruginosa PAO1]
 gi|9950050|gb|AAG07258.1|AE004804_6 probable peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Pseudomonas aeruginosa PAO1]
          Length = 272

 Score = 80.5 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 67/183 (36%), Gaps = 5/183 (2%)

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI-RTVLFSIPDNKLQNQGFV 198
            ++    +++ +  +   + +            +     L  R VL +   + L+ +   
Sbjct: 79  EEARIRQLLEEEVQVPEADEDACRTWYAANPGRLLGPWRLQLRHVLLACAPDDLEGRETA 138

Query: 199 QKRIKDAEESRLRLPKDC-NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT 257
           +K+  +  +     P+   +   +F++     S G   ++      P+F+  L +     
Sbjct: 139 RKQAAELLDELRGHPERFVDLARRFSACPSKESGGDLGWIEPGQTVPEFEKRLLRRAPGL 198

Query: 258 TN-PYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              P  ++ G+  + +  +   +     A +A ++A      +++   +Y+  L  +A I
Sbjct: 199 LEHPLESRYGLHVVELLAREGGEPLDFDAARAQIAAHLQAQVLQRAVGQYIGVLAGDACI 258

Query: 315 HYY 317
             +
Sbjct: 259 EGF 261


>gi|218232569|ref|YP_002365948.1| peptidylprolyl isomerase [Bacillus cereus B4264]
 gi|218160526|gb|ACK60518.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus B4264]
          Length = 285

 Score = 80.5 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/304 (9%), Positives = 77/304 (25%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + ++S       S    T     IT  +  K++             K  
Sbjct: 4   KHIFIITALISILMLSACEQKNGSATVATATDSTITKDNFEKQLK--------DRYGKDM 55

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           + E++ + +  ++ +      +                +  +    F           ++
Sbjct: 56  LYEMMAQDVITKKYKVPDEEVNKEVE-----------KVKKQYGDQFKKVLENYGLKDEE 104

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 105 DFKNQIKFKLAMNEAIKKSITEKDIKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ +             ++ +  +      G   Y     + P+F+    K + 
Sbjct: 145 SDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFNSGTMAPEFETAAYKLNV 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              +NP  +  G   I + DK+DL     +K  +       +        + +++    A
Sbjct: 205 GQISNPVKSSNGYHVIKLTDKKDLKPYDEVKNSIRKNLEEERTADPVFSKKLLQEELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|153005190|ref|YP_001379515.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152028763|gb|ABS26531.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 320

 Score = 80.5 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/297 (12%), Positives = 80/297 (26%), Gaps = 54/297 (18%)

Query: 41  RIRTTINGEVITDGDISKRIA----LLKLQKINGELEKIAVQELIVETLKKQEIEKSGIT 96
            I    +G  +T     K++      ++ +    E +K  ++ LI   L  +E +  G+ 
Sbjct: 25  PIVAKGDGISVTADAFKKKLDEQSPFIRARYSALERKKEFLENLIRFELLAREAQAKGLD 84

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
            D                                          + +   +V+  F  + 
Sbjct: 85  KDPEVQETL----------------------------------KKIMVQKLVRQAFDSEA 110

Query: 157 -GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-- 213
               + E      +  +  V+    R                 +        +RL++   
Sbjct: 111 GKPADDEARKYYDEHLDEFVKPERARVSAVIFAAPAGSPDRAAKAGQAKNALARLKVEGP 170

Query: 214 ----KDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQN------LLKKSQNNTTNPYV 262
                  N   + +       + G   Y  + +L  Q            +     +    
Sbjct: 171 KNPLAFSNLARELSDDPVTKAAGGDLGYRTKEELSAQHSPELANAAFALREVGQESGVVE 230

Query: 263 TQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           T +G   + +  ++         +KA ++A+       K    YVK LR  A I  +
Sbjct: 231 TPRGFAILKLGARQAPIDRPFDEVKAQIAARIGRESRTKEFDSYVKGLREKASIEIF 287


>gi|218897938|ref|YP_002446349.1| foldase protein PrsA [Bacillus cereus G9842]
 gi|218541254|gb|ACK93648.1| foldase protein PrsA [Bacillus cereus G9842]
          Length = 280

 Score = 80.5 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 85/305 (27%), Gaps = 44/305 (14%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +     V+    +   +S  +   S  I TT +G  I++ D +K++             K
Sbjct: 1   MKRKKLVIGSILMGMTLSLSACGSSDNIVTTKSGS-ISESDFNKKLK--------ENYGK 51

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             + E++VE +   + + +                        E      D         
Sbjct: 52  QNLSEMVVEKVLDDKYKVTDEEVT---------------KQLKELKDKMGDNFNTYMESN 96

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                 Q      +   F         E          + V   L++             
Sbjct: 97  GVKNEDQLKEKLKLTFAFEKAIKATVTEKDFKDHYKPKLQVSHILVK------------- 143

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK- 252
               +K  K+ +E            ++++         G+        +  +F++   K 
Sbjct: 144 ---DEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVKEFEDAAYKL 200

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
                + P  +  G   I + DK++L      K  +  +    +I+  +   +  + L  
Sbjct: 201 EVGQLSEPVKSSFGYHIIKLTDKKELKSYEEEKENIRKELEQQRIQDPQFHQQVTRDLLK 260

Query: 311 NAIIH 315
           NA I 
Sbjct: 261 NADIK 265


>gi|259047483|ref|ZP_05737884.1| foldase protein PrsA [Granulicatella adiacens ATCC 49175]
 gi|259035674|gb|EEW36929.1| foldase protein PrsA [Granulicatella adiacens ATCC 49175]
          Length = 315

 Score = 80.5 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/307 (9%), Positives = 82/307 (26%), Gaps = 21/307 (6%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +   +  +++      ++  S   +S    T     +T  +    +           + +
Sbjct: 1   MKKKFTGMLVLASTLALAACSNNTNSETIATTKYGNVTREEFVNAMK--------DTVGE 52

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             +Q L++  + +  +E S    +                      +  L          
Sbjct: 53  QTLQRLVLTKVLEGSVEDSKKLKEDAEQEVA------KLVAQYGGENGMLAALKQSGIAS 106

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                       ++           + +I     + +           +      +  + 
Sbjct: 107 VDAYRQTIYLNKLMTAAVKKAAAFTDEDIKKYYDEWEPQIK--VQHILIAAKATASDEEK 164

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKK 252
                K  +  ++ +          E  A        G+      SD+  +F   +   K
Sbjct: 165 AAAKAKAEELIQKLKDGADFSELAKENSADTGTASKGGEIGPFKRSDMVKEFSEASYNLK 224

Query: 253 SQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLR 309
           +  + T  P  TQ G   I + DK +      +K+ +  +    K++   +  + +  L 
Sbjct: 225 NVGDITETPVETQFGYHIIKMLDKGEKKPFDEVKSQMEDEMLQAKLKDSAYLHQTMVDLL 284

Query: 310 SNAIIHY 316
             A +  
Sbjct: 285 KGADVKI 291


>gi|254468807|ref|ZP_05082213.1| PpiC-type peptidyl-prolyl cis-trans isomerase [beta proteobacterium
           KB13]
 gi|207087617|gb|EDZ64900.1| PpiC-type peptidyl-prolyl cis-trans isomerase [beta proteobacterium
           KB13]
          Length = 627

 Score = 80.5 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/395 (10%), Positives = 104/395 (26%), Gaps = 93/395 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +   L      +    +++ F +  I SY +   S+    ++N   IT  D  + +
Sbjct: 1   MLETIRNGLEKKWAKVVLAIIVVPFALFGIDSYLNSMGSNVTVASVNNFEITAQDFQRSM 60

Query: 61  ALLKLQ----------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF---V 107
            +L+ +            + E  K  +  L+   L K  ++K       + ++ +     
Sbjct: 61  MVLQERLDAEGQDRSILQSPEFRKSVIDSLVDSQLIKSAVDKYNFRISDDQLSTYIVGMP 120

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN----------------- 150
               N   S + +   +   G+     +Q +        +                    
Sbjct: 121 DFQENGKFSQDRYDQIVQYNGLTPKKLEQQIRGDMATQQIQGTLANLTYFPKKNIEEIAK 180

Query: 151 ----------------DFMLKYGNLEMEIPANKQKMKNITVRE---------YLIRTVLF 185
                           D+  K    + EI    +   +  +R          Y +  ++ 
Sbjct: 181 IAYQKRHVKLYDMLLLDYEDKIKVTDDEIKEFYEANTDSFIRPDQVKIEFVVYSVANIVP 240

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI------------------- 226
           ++     + + F +   ++ E    R       +   +                      
Sbjct: 241 NVSVTDEEVKEFYEFNKQNYEGDEERSASHILFMADASQSDEEVEKVRQKASNVLKDIKK 300

Query: 227 -----------------HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVE 268
                               + G   +     +  +F+      ++   ++   T  G  
Sbjct: 301 DPNKFEEYAKDLSQDPESAKNGGSLGFFKRGVMVKEFEESAFTLNKGEISDLVRTDFGFH 360

Query: 269 YIAICDKR-DLGGEIALKAYLSAQNTPTKIEKHEA 302
            I + D + D      +KA +  +    K  +   
Sbjct: 361 IIRLDDVKGDQVSFKDVKAQVKGELLYGKALEIYN 395


>gi|206562085|ref|YP_002232848.1| putative peptidylprolyl isomerase [Burkholderia cenocepacia J2315]
 gi|198038125|emb|CAR54073.1| putative peptidylprolyl isomerase [Burkholderia cenocepacia J2315]
          Length = 280

 Score = 80.5 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/319 (13%), Positives = 81/319 (25%), Gaps = 61/319 (19%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSR----IRTTINGEVITDGDISKRIALLKLQKI 68
           I +++T   L   C  P+         +     +   +N   I   D+   I     Q +
Sbjct: 6   ISIVSTLIALACACGAPVARAAGTKTDTPLPPGVEAVVNDTPIARSDVDSMIEATG-QTV 64

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             EL   A +ELI + L +Q  EK+                                   
Sbjct: 65  TPELRAQAKRELIAQHLVEQAAEKANYGSRPEVNRVVM---------------------- 102

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                        +     ++++   +              + N    EY    +  + P
Sbjct: 103 --------RARTVAATDLYLRDNVHPQAVTDAQVKARYDDIVANAAQFEYRADVIAVADP 154

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL---------LE 239
                    +++                   +K+ +     + G AQ++           
Sbjct: 155 AEVNALVAELKQ-----------GAAFDAVAKKYNTTP---NGGVAQWVELRTPVAEGKT 200

Query: 240 SDLH-PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTK 296
             L  P  Q +          P         + + +KR   +    A K  L  Q     
Sbjct: 201 GGLPLPLAQAITSLQPGAVAGPIRVGNAFAIVKLDEKRATVVPTFEAAKNVLRQQLEGQA 260

Query: 297 IEKHEAEYVKKLRSNAIIH 315
            ++     V KL   A I 
Sbjct: 261 QQRAMTALVDKLAGQATIQ 279


>gi|254242564|ref|ZP_04935886.1| hypothetical protein PA2G_03316 [Pseudomonas aeruginosa 2192]
 gi|126195942|gb|EAZ60005.1| hypothetical protein PA2G_03316 [Pseudomonas aeruginosa 2192]
          Length = 272

 Score = 80.5 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/183 (11%), Positives = 67/183 (36%), Gaps = 5/183 (2%)

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI-RTVLFSIPDNKLQNQGFV 198
            ++    +++ +  +   + +            +     L  R VL +   + L+ +   
Sbjct: 79  EEARIRQLLEEEVQVPEADEDACRTWYAANPGRLLGPWRLQLRHVLLACAPDDLEGRETA 138

Query: 199 QKRIKDAEESRLRLPKDC-NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT 257
           +K+  +  +     P+   +   +F++     + G   ++      P+F+  L +     
Sbjct: 139 RKQAAELLDELRGHPERFVDLARRFSACPSKEAGGDLGWIEPGQTVPEFEKRLLRRAPGL 198

Query: 258 TN-PYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              P  ++ G+  + +  +   +     A +A ++A      +++   +Y+  L  +A I
Sbjct: 199 LEHPLESRYGLHVVELLGREGGEPLDFDAARAQIAAHLQAQVLQRAVGQYIGVLAGDACI 258

Query: 315 HYY 317
             +
Sbjct: 259 EGF 261


>gi|116051907|ref|YP_789250.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587128|gb|ABJ13143.1| putative peptidyl-prolyl cis-trans isomerase [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 272

 Score = 80.5 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/183 (11%), Positives = 67/183 (36%), Gaps = 5/183 (2%)

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI-RTVLFSIPDNKLQNQGFV 198
            ++    +++ +  +   + +            +     L  R VL +   + L+ +   
Sbjct: 79  EEARIRQLLEEEVQVPEADEDACRTWYAANPGRLLGPWRLQLRHVLLACAPDDLEGRETA 138

Query: 199 QKRIKDAEESRLRLPKDC-NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT 257
           +K+  +  +     P+   +   +F++     + G   ++      P+F+  L +     
Sbjct: 139 RKQAAELLDELRGHPERFVDLARRFSACPSKEAGGDLGWIEPGQTVPEFEKRLLRRAPGL 198

Query: 258 TN-PYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              P  ++ G+  + +  +   +     A +A ++A      +++   +Y+  L  +A I
Sbjct: 199 LEHPLESRYGLHVVELLGREGGEPLDFDAARAQIAAHLQAQVLQRAVGQYIGVLAGDACI 258

Query: 315 HYY 317
             +
Sbjct: 259 EGF 261


>gi|325522151|gb|EGD00807.1| putative peptidylprolyl isomerase [Burkholderia sp. TJI49]
          Length = 280

 Score = 80.5 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/319 (13%), Positives = 81/319 (25%), Gaps = 61/319 (19%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSR----IRTTINGEVITDGDISKRIALLKLQKI 68
           I +++    L   C  PI         +     +   +N   I   D+   I     Q +
Sbjct: 6   ISIVSALIALACACGAPIARAAGTKTETPLLPGVEAVVNDTPIARSDVDSMIEA-SGQAV 64

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
              L   A +ELI   L +Q  EK+                                   
Sbjct: 65  TPALRAQAKRELIARQLLEQTAEKADY------------------------------GSR 94

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
              N         +     V+++   +              + N    EY    +     
Sbjct: 95  PEVNRVVTRARTVAATDLYVRDNVHPQAVTDAEVKARYDHIVANAAQFEYRAEVI----- 149

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL---------LE 239
                       ++     +  +        +++ +     + G AQ++           
Sbjct: 150 ------AVADPAQMNTVIAALKQGAAFDTLAKQYNTTP---NGGVAQWVELRTPVAEGST 200

Query: 240 SDLH-PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTK 296
             L  P  + +          P      +  + + +KR   +    A K  L  Q     
Sbjct: 201 GGLPTPIAEAITSLQPGAVAGPIRIGNALAIVKLDEKRPTTVPTFDAAKKVLRQQLEAEA 260

Query: 297 IEKHEAEYVKKLRSNAIIH 315
            ++  A  V KL + A I 
Sbjct: 261 QQRAMAALVDKLAAQATIQ 279


>gi|218562900|ref|YP_002344679.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|112360606|emb|CAL35403.1| possible periplasmic protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|315928422|gb|EFV07735.1| surA N-terminal domain protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 271

 Score = 80.5 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/296 (11%), Positives = 79/296 (26%), Gaps = 32/296 (10%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           I+       S  S    + I   ++ E IT  DI + +  LK+          A+  LI 
Sbjct: 4   ILLSFAFFASLASANTINAIAVVVDKEPITTYDIDQTMKALKID------RNKALGVLIN 57

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           E ++  ++++ GI  +   ++    +       +   F + L  +      F+       
Sbjct: 58  EKMEISQMKQLGIVVNDLELDDAINKMLAQNKTTLNAFKANLKSKNQSYEQFRTNFKKDL 117

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
               + +    +   +   +      +        Y        + +N    +     + 
Sbjct: 118 EKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYLSNNPQTLENIKNTKK 177

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYV 262
              +     L                           +        L +    + +    
Sbjct: 178 TILKPQNASLN------------------------TSNADPRLLGLLSQIPVGSFSPVLN 213

Query: 263 TQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + G E   +  K          +K  +       + +    +Y  KLRS   I Y
Sbjct: 214 GKNGYELYEVKSKDGTQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKINIEY 269


>gi|206971880|ref|ZP_03232829.1| foldase protein PrsA [Bacillus cereus AH1134]
 gi|206733265|gb|EDZ50438.1| foldase protein PrsA [Bacillus cereus AH1134]
 gi|326940633|gb|AEA16529.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 280

 Score = 80.5 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 85/305 (27%), Gaps = 44/305 (14%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +     V+    +   +S  +   S  I TT +G  I++ D +K++             K
Sbjct: 1   MKRKKLVIGSILMGMTLSLSACGSSDNIVTTKSGS-ISESDFNKKLK--------ENYGK 51

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             + E++VE +   + + +                        E      D         
Sbjct: 52  QNLSEMVVEKVLNDKYKVTDEEVT---------------KQLKELKDKMGDNFNTYMESN 96

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                 Q      +   F         E          + V   L++             
Sbjct: 97  GVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYKPKLQVSHILVK------------- 143

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK- 252
               +K  K+ +E            ++++         G+        +  +F++   K 
Sbjct: 144 ---DEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVKEFEDAAYKL 200

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
                + P  +  G   I + DK++L      K  +  +    +I+  +   +  + L  
Sbjct: 201 EVGQLSEPVKSSFGYHIIKLTDKKELKPYEEEKENIRKELEQQRIQDPQFHQQVTRDLLK 260

Query: 311 NAIIH 315
           NA I 
Sbjct: 261 NADIK 265


>gi|322834042|ref|YP_004214069.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rahnella sp. Y9602]
 gi|321169243|gb|ADW74942.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rahnella sp. Y9602]
          Length = 626

 Score = 80.5 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/399 (7%), Positives = 100/399 (25%), Gaps = 87/399 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + +  +  +    +++ F +  + +Y            +NG+ I    + + +
Sbjct: 1   MMDNLRAAANHVVLKIILALIILSFILTGVGNYLIGGSGDY-AAKVNGQEIGRAQLEQAV 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                    +L + ++  LI  TL  Q  +K GIT     +  
Sbjct: 60  QNQRSRLQQQLGDQFSALAGSDGYMQQLRQESLSNLIDVTLLDQYSKKLGITVSDQQIKD 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY---LAIQSIWPDVVKND---------- 151
                 +       D + +L            +   +  Q I   + +            
Sbjct: 120 AIFATPQFQTDGRFDNAKYLQSIQGMGYTADNFAQLMKQQLISQQLEQAYGQSDFVLPVE 179

Query: 152 -------------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
                                       +  + E++   ++ K   ++  +  +  +   
Sbjct: 180 SKSLGGLILQSRDVQTATLDTDALAAKQQVTDAELQAFYDQNKNSFLSPEQVKVSYIEMD 239

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPK-----------------------------DCN 217
               + +            ++ +    +                                
Sbjct: 240 AAAMQGKTNVTDADISAYYDQHKSEFGQPERRRYSVIVLKSQADADAVAAELKKGTDFAE 299

Query: 218 KLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK- 275
             +  ++        G   ++      P+F+N    ++   +    +  G   + + D  
Sbjct: 300 LAKTKSTDALSARQGGDLGWMEPETTLPEFKNANLTTKGQVSGVIKSDSGFFILRLDDVT 359

Query: 276 -RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
              +     ++  ++ +    K         +K+   A 
Sbjct: 360 PEQVKPLADVRNTIADKLKQEKSLDAYYALQQKVSEAAT 398


>gi|229179148|ref|ZP_04306503.1| Foldase protein prsA 1 [Bacillus cereus 172560W]
 gi|228604303|gb|EEK61769.1| Foldase protein prsA 1 [Bacillus cereus 172560W]
          Length = 285

 Score = 80.5 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 86/305 (28%), Gaps = 44/305 (14%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           L     V+    +   +S  +   S  I TT +G  I++ D +K++             K
Sbjct: 6   LKRKKLVIGSILMGMTLSLSACGSSDNIVTTKSGS-ISESDFNKKLK--------ENYGK 56

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             + E++VE +   + + +                        E      D         
Sbjct: 57  QNLSEMVVEKVLNDKYKVTDEEVT---------------KQLKELKDKMGDNFNTYMESN 101

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                 Q      +   F         E          + V   L++             
Sbjct: 102 GVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYKPKLQVSHILVK------------- 148

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK- 252
               +K  K+ +E            ++++         G+        +  +F++   K 
Sbjct: 149 ---DEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVKEFEDAAYKL 205

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
                + P  +  G   I + DK++L      K  +  +    +I+  +   +  ++L  
Sbjct: 206 EVGQLSEPVKSSFGYHIIKLTDKKELKPYEEEKENIRKELEQQRIQDPQFHQQVTRELLK 265

Query: 311 NAIIH 315
           NA I 
Sbjct: 266 NADIK 270


>gi|146339260|ref|YP_001204308.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. ORS278]
 gi|146192066|emb|CAL76071.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. ORS278]
          Length = 341

 Score = 80.5 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/281 (9%), Positives = 74/281 (26%), Gaps = 32/281 (11%)

Query: 39  SSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFD 98
           +  +   +    +T  ++   I  L  ++    +   A+                     
Sbjct: 62  NDEVVARVGDSDVTADEVRATIVTLDPRQQAALMRDPAL--------------------- 100

Query: 99  SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGN 158
              ++        N  +  E  +   D+Q        +          +           
Sbjct: 101 ---LSQTVRAILANRLVLKEALAKKWDQQPAVVAQLARARESILTEGYLQSVTQPPDSYP 157

Query: 159 LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
            E +I A  +   +  +     R     +      ++       K  E+   +L +    
Sbjct: 158 SEADIKAAYEVNMSAFLVPRRFRIAQILVALANDADKAAEDAAKKKLEDVVRKLKQPGTD 217

Query: 219 LEKFASKIH-----DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAI 272
               A             G+  ++ E +L  + ++ +   ++   T+P     G   + +
Sbjct: 218 FAALARASSDETATAEKDGEIGWVPEPNLRGEIRSQVAGLAKGGVTDPIRLDDGWHVVKL 277

Query: 273 CDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            D           +K  L  +    + + +   YV +L   
Sbjct: 278 LDTDASTTRPLAEVKDVLIQRLRAERADANRRAYVAELVKQ 318


>gi|315127185|ref|YP_004069188.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (rotamase D)
           [Pseudoalteromonas sp. SM9913]
 gi|315015699|gb|ADT69037.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (rotamase D)
           [Pseudoalteromonas sp. SM9913]
          Length = 633

 Score = 80.5 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/398 (9%), Positives = 102/398 (25%), Gaps = 96/398 (24%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+       +  +    V++ F +  I SY            +NG  I+  + S+  
Sbjct: 1   MLEKIREGSQGPVAKVILGAVILSFALAGIGSYLGQTTEQP-VAEVNGIKISQTEFSRAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                    ++ +  +  L+ + L+ Q   + G+     ++  
Sbjct: 60  QNERSRLEQQFGEYFTQIAADPTYMAQIRQGVIDRLVQQELQSQLATELGLRVSDESIRQ 119

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                         + + +   + +     + F++YL        +V             
Sbjct: 120 TILELPYFKIGDQFNNDRYLQVIRQMNFQPDSFREYLRDDMTRSQLVSAVAGTDFALQNE 179

Query: 149 --------------------KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS-- 186
                               K          + E+    +      +   LI        
Sbjct: 180 LKSAIALQQQTRSIDYLVIDKQAMQADVDVTDQEVADYYELNAGQFLSPELISVNYIELD 239

Query: 187 ----------------IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA------- 223
                             +         +KR             D  K +  +       
Sbjct: 240 ADDIDVASVSEDDVKAYYEQSKAQYVEPEKRRVSHILIDNSEDDDAAKAKAESLLAQLNA 299

Query: 224 -------------SKIHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVE 268
                          +     G  +++    + P F++     +++ + ++   ++ G  
Sbjct: 300 GADFAQLAESSSDDIVSAEMGGDLEWIERDVMEPAFEDAAFALQNKGDYSDVVASEFGYH 359

Query: 269 YIAICDK--RDLGGEIALKAYLSAQNTP-TKIEKHEAE 303
            I + D   + +    A+KA L A+     K++    +
Sbjct: 360 IIKLTDIQSQQVKPYDAVKADLRAELEQAEKVDAFYEK 397


>gi|241663100|ref|YP_002981460.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
           12D]
 gi|240865127|gb|ACS62788.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
           12D]
          Length = 265

 Score = 80.5 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 68/280 (24%), Gaps = 48/280 (17%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              +NG+ I    +   I     Q  + EL   A   L+   L +Q+  K G        
Sbjct: 27  AAVVNGKAIPSAKVDALIKK-SGQPESPELRAKARDMLVDRELIEQDAAKRG-------- 77

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                     + +    Q     +    +V  +F     N    
Sbjct: 78  --------------------------LLERDDVQEQLASARLNVLVAAEFEDYVKNSPAT 111

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                ++   I  +    +           +                    K  +  +  
Sbjct: 112 EDELHKQYDKIKAQFGNGKEYHAHHILVDKEADAKA------IIAKLKAGAKFEDIAKAQ 165

Query: 223 ASK-IHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDKRDL- 278
           +       + G   +       P+F   L    +   T  P  TQ G   I + D RD  
Sbjct: 166 SKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGQITQTPVKTQFGWHVIRLDDTRDAK 225

Query: 279 -GGEIALKAYLSAQNTPTK--IEKHEAEYVKKLRSNAIIH 315
                 +K  L       +          +K+LR  A I 
Sbjct: 226 IPSYEDVKPQLLEMMMGDQNWQRSKFQAMLKELREKAKIQ 265


>gi|283954909|ref|ZP_06372425.1| hypothetical protein C414_000260181 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793749|gb|EFC32502.1| hypothetical protein C414_000260181 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 271

 Score = 80.1 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 81/296 (27%), Gaps = 32/296 (10%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           I+       S  S    + I   ++ E IT  DI + + +LK+          A+  LI 
Sbjct: 4   ILLSFAFFASLASANTINAIAVVVDKEPITTYDIDQTMKVLKID------RNKALGILIN 57

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           E ++  ++++ GI  +   ++    +       +   F + L  +      F+       
Sbjct: 58  EKMEISQMKQLGIVVNDLELDDAINKMLAQNKTTLNAFKANLKSKNQSYEQFRTNFKKDL 117

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
               + +    +   +   +      +        Y    V   + +N    +     + 
Sbjct: 118 EKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINVNIYLSNNPQTLENIKNTKK 177

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYV 262
              +     L                           +        L +      +    
Sbjct: 178 ITLKSQNASLN------------------------TSNADPRLLGLLSQIPNGGFSPVLN 213

Query: 263 TQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + G E   + +K          +K  +       + +    +Y  KLRS   I Y
Sbjct: 214 GKNGYELYEVKNKDGAQTPEYKQVKNEVLNAYVSEQRQNFIQDYFDKLRSKINIEY 269


>gi|224372671|ref|YP_002607043.1| foldase protein PrsA [Nautilia profundicola AmH]
 gi|223588937|gb|ACM92673.1| foldase protein PrsA [Nautilia profundicola AmH]
          Length = 286

 Score = 80.1 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/320 (8%), Positives = 84/320 (26%), Gaps = 53/320 (16%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMS------------SRIRTTINGEVITDGDISKRI 60
           +K +    ++                +            + +  TI+G+ +T  D++  +
Sbjct: 1   MKKIVLGGLIAAAAFAFPGMQGGMGNASMTGKPMKGLTDNTVVATIDGKKVTVKDVNNFL 60

Query: 61  ALLKLQKIN--GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
             +         +L    V + + + +    + K   + +        V           
Sbjct: 61  QGMTADNRIRLQDLPAQHVGQFVKQYVDTMVLYKKAKSVEKTPQFQALV----------- 109

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
                                 +      +K        +        ++          
Sbjct: 110 ---------------------KKMAVDYWLKQKLNNMKISDAEVKKFYEENKDIYFKTTP 148

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
            ++     + D K   +   + +    +    +        +K+++    V+ G+  +  
Sbjct: 149 KVKARHIVVKDEKTAEKLINELKGLHGKALEEKF---AELAKKYSTGPTKVNGGELGWFD 205

Query: 239 ESDLHPQF-QNLLKKSQNNTT-NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK 296
              +   F + + K      T  P  T+ G   I + +K +          +  Q     
Sbjct: 206 PKQMVQPFAEAVNKMKPGELTLKPVKTRFGYHVILVEEKNEKNY--MPLNEVKLQIIEYL 263

Query: 297 IEKHEAEYVKKLRSNAIIHY 316
                 + ++KL+ ++ +  
Sbjct: 264 KRAKLQKEIQKLKDSSKVDI 283


>gi|152988940|ref|YP_001346623.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           aeruginosa PA7]
 gi|150964098|gb|ABR86123.1| probable peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Pseudomonas aeruginosa PA7]
          Length = 272

 Score = 80.1 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/183 (11%), Positives = 67/183 (36%), Gaps = 5/183 (2%)

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI-RTVLFSIPDNKLQNQGFV 198
            ++    +++ +  +   + +            +     L  R VL +   + L+ +   
Sbjct: 79  EEARIRQLLEEEVQVPEADEDACRTWYAANPGRLLGPWRLQLRHVLLACAPDDLEGRETA 138

Query: 199 QKRIKDAEESRLRLPKDC-NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT 257
           +K+  +  +     P+   +   +F++       G   +++     P+F+  L +     
Sbjct: 139 RKQAAELLDELRGHPERFVDLARRFSACPSKEEGGDLGWIVPGQTVPEFEKRLLRRAPGL 198

Query: 258 TN-PYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              P  ++ G+  + +  +   +  G  A +A ++       +++   +Y+  L  +A I
Sbjct: 199 LEHPLESRYGLHVVELLAREGGEPLGFDAARAQIATHLQAQVLQRAVGQYIGVLAGDARI 258

Query: 315 HYY 317
             +
Sbjct: 259 EGF 261


>gi|256820408|ref|YP_003141687.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
           ochracea DSM 7271]
 gi|256581991|gb|ACU93126.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
           ochracea DSM 7271]
          Length = 451

 Score = 80.1 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/309 (11%), Positives = 87/309 (28%), Gaps = 15/309 (4%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--INGEL 72
            + +  V+++F                +   +   +I + DI K    L+ Q+       
Sbjct: 5   KIWSALVILLFTTPFFAQNNERRKVDGVAAVVGDYLILESDIDKAYIDLQQQEVDTREIN 64

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH-----ARNTGLSAEDFSSFLDKQ 127
               + +L+ + L   +  +  +    + V     Q      A+  G   +    +    
Sbjct: 65  RCQMLGKLMEDKLYAHQAVQDSVKLTDSEVRDQVNQRIEFLTAQLGGDIKKLLEFYKKDD 124

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
                     L   S+    +K   +        E+      +       +     +  I
Sbjct: 125 EQSMRDELFNLLKVSMLAQRMKQQIIKDIEVTPEEVRTFFNAIPADERPHFGTELEIAQI 184

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH---DVSIGKAQYLLESDLHP 244
             N +  +  VQK I    + +  + ++       A               +   S    
Sbjct: 185 VVNPVAPKSSVQKVINQLNDIKKDVEENGMSFSTKAILYSQDRATGGQVLTFNRNSAFDK 244

Query: 245 QFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN-TPTKIEKHEA 302
            F+++     +   + P+ +  G   I +   R   G+     ++      P +      
Sbjct: 245 AFKDVAFTLREGEISKPFESSFGWHIIQMDKIR---GKEVSVRHILLMPEIPQEALNEAK 301

Query: 303 EYVKKLRSN 311
           E + K+R  
Sbjct: 302 EKIAKIRDR 310


>gi|296501860|ref|YP_003663560.1| peptidylprolyl isomerase [Bacillus thuringiensis BMB171]
 gi|296322912|gb|ADH05840.1| peptidylprolyl isomerase [Bacillus thuringiensis BMB171]
          Length = 285

 Score = 80.1 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 77/304 (25%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + ++S       S    T     IT          LK +     L ++ 
Sbjct: 4   KHIFIITALISILMLSACGQKNGSATVATATDSTITK---DNFEKQLKDRYGKDMLYEMM 60

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
            Q++I +  K               VN    +  +  G        F           ++
Sbjct: 61  AQDIITKKYK----------VPDEEVNKEVEKVKKQYG------DQFKKVLENYGLKDEE 104

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 105 DFKNQIKFKLAMNEAIKKSITEKDVKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ +             ++ +  +      G   Y     + P+F+    K + 
Sbjct: 145 SDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFNSGTMAPEFETAAYKLNV 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              +NP  +  G   I + DK+DL     +K  +       +        + +++    A
Sbjct: 205 GQISNPVKSSNGYHVIKLTDKKDLKPYDEVKNSIRKNLEEERTADPVFSKKLLQEELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|312878320|ref|ZP_07738236.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311794903|gb|EFR11316.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 343

 Score = 80.1 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 106/341 (31%), Gaps = 30/341 (8%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T  +  IK++     ++   +     + S   +      IN E I   +   R 
Sbjct: 1   MNKILKTVKTHKIKIIGVVGFIVAILVAMFFVFSSSLQT---VLEINNEKINKKEFLMRY 57

Query: 61  ALLKLQK------------------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
            +LK                         L+   ++ LI ETL  QE +K G+       
Sbjct: 58  NILKQNAIEMSNRPDILDIEYSGMKYKDWLKNKVIELLITETLCLQEAKKRGMKLTFAEE 117

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                 +  N   + +       +        ++    Q +   ++   +     N+ ++
Sbjct: 118 QEV--NNYINNIKNDKYAREMFYEYLKKIKSNEELFKKQLLRERLIDKLYKEITKNVTLK 175

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
               KQ  +N      +++ V   +     Q +   +K                +  +K+
Sbjct: 176 EQEMKQYYENNKNEYRMVKVVDIFLRVENEQQKAEKEKLANQLMAKIKNGGSIFDLAQKY 235

Query: 223 AS-KIHDVSIGKAQYLLESDLHPQF-----QNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
           +     +   G   Y  + +   +F     + +    +   +    T  G     I D++
Sbjct: 236 SEITTKNGQKGVIDYFRKGEKESEFGSVFEEKVFNLKKGEISEIIQTLNGYHIAQIIDEK 295

Query: 277 DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
                 ++K  +       K +K   EY+ +LR  ++I  +
Sbjct: 296 FAP-YESVKGEIEQSLKKQKKDKVFQEYLNELRKKSVIKEF 335


>gi|315223421|ref|ZP_07865278.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
           ochracea F0287]
 gi|314946594|gb|EFS98585.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
           ochracea F0287]
          Length = 471

 Score = 80.1 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/317 (11%), Positives = 90/317 (28%), Gaps = 17/317 (5%)

Query: 9   LSDFIKLLTTY--FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ 66
           ++ F+     +   V+++F                +   +   +I + DI K    L+ Q
Sbjct: 17  ITKFMNKTKIWSVLVILLFTTPFFAQNNERRKVDGVAAVVGDYLILESDIDKAYIDLQQQ 76

Query: 67  K--INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH-----ARNTGLSAED 119
           +           + +L+ + L   +  +  +    + V     Q      A+  G   + 
Sbjct: 77  EVDTREINRCQMLGKLMEDKLYAHQAVQDSVKLTDSEVRDQVNQRIEFLTAQLGGDIKKL 136

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
              +              L   S+    +K   +        E+      +       + 
Sbjct: 137 LEFYKKDDEQSMRDELFNLLKVSMLAQRMKQQIIKDIEVTPEEVRTFFNAIPADERPHFG 196

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH---DVSIGKAQY 236
               +  I  N +  +  VQK I    + +  + ++       A               +
Sbjct: 197 TELEIAQIVVNPVAPKSSVQKVINQLNDIKKDVEENGMSFSTKAILYSQDRATGGQVLTF 256

Query: 237 LLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN-TP 294
              S     F+++     +   + P+ +  G   I +   R   G+     ++      P
Sbjct: 257 NRNSAFDKAFKDVAFTLREGEISKPFESSFGWHIIQMDKIR---GKEVSVRHILLMPEIP 313

Query: 295 TKIEKHEAEYVKKLRSN 311
            +      E + K+R  
Sbjct: 314 QEALNEAKEKIAKIRDR 330


>gi|157736637|ref|YP_001489320.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri RM4018]
 gi|157698491|gb|ABV66651.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri RM4018]
          Length = 269

 Score = 80.1 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 91/299 (30%), Gaps = 42/299 (14%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA--LLKLQKINGELEKIAVQE 79
           ++   +  I    +   +     T+NGE IT  DI+  +    +   K+  E +   +++
Sbjct: 4   IVSSLVASIALATALNAADVSYATVNGENITKQDIAMALQDPRVDFDKLPQEAKTQILEQ 63

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           ++   L  Q     G+  D+  V                                     
Sbjct: 64  IVNMKLIAQHAIDDGVEKDAKYVEA-------------------------------MKKI 92

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
             ++  +V + + + K    E +     +K K   V           +           +
Sbjct: 93  KSNLALEVWQKNEIDKIKVTEADKKDFYEKNKEKFVEPETFEASHILVKTE-----AEAK 147

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT- 258
             I   +++  ++ K     +K        + G         + P+F + +K     T  
Sbjct: 148 DIISQLDKAPNKVEKFKELSKKSLDTASAKNGGALGRFAVEQMVPEFGSAVKALAKGTYS 207

Query: 259 -NPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             P  TQ G   I + DK          ++  ++       + K   E V+ LR +A I
Sbjct: 208 KTPVKTQFGYHVIYLKDKFPSKTFAYTEVEKNINQVLIGNALNKKIKELVEDLRKDAKI 266


>gi|172064761|ref|YP_001812411.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MC40-6]
 gi|171998246|gb|ACB69162.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MC40-6]
          Length = 282

 Score = 80.1 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/319 (12%), Positives = 84/319 (26%), Gaps = 57/319 (17%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN 69
             FI    +   L I C+    +  S      +  T+NG  IT  ++   +   + Q   
Sbjct: 7   KTFIA--ASALYLGIACVAQAQTPASSTSPVGVVATVNGTAITQAEVDTVLRASR-QPDT 63

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
            ++ +    +LI   L +Q  EK+                                    
Sbjct: 64  PQVRQAIKNQLIARVLIQQAAEKANYGSKPEVQ--------------------------- 96

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                 Q     +     +K++   +            + + ++   EY  R ++     
Sbjct: 97  ---TAMQVAKANAETQLYLKDNVKPEPVTDAQIKARYDEIVASLGKDEYKPRLIVVKDAA 153

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL---------LES 240
                   ++                     +++      + G+  ++           +
Sbjct: 154 TAATVLAELKA-----------GKPFDGLARQYSIAPSRDAGGELPWVSFKTPAAEGKTA 202

Query: 241 DLHPQFQNLLKKSQNNTTNP--YVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTK 296
            L       L K       P           + +  KR   +      +A +  Q     
Sbjct: 203 GLPVAIAQALDKLPVGAVTPESIAVDNARAIVKLDAKRPTQVPTFNQAQATIHQQLEALA 262

Query: 297 IEKHEAEYVKKLRSNAIIH 315
           +EK  A++V  L  NA I 
Sbjct: 263 LEKASAQFVGGLLKNATIQ 281


>gi|221236099|ref|YP_002518536.1| peptidyl-prolyl cis-trans isomerase [Caulobacter crescentus NA1000]
 gi|220965272|gb|ACL96628.1| peptidyl-prolyl cis-trans isomerase [Caulobacter crescentus NA1000]
          Length = 323

 Score = 80.1 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/323 (11%), Positives = 80/323 (24%), Gaps = 52/323 (16%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K    L   +  +    ++   C    V+ K           +NG+VI   D+ +  
Sbjct: 1   MALKTSFRLMGVLGAVACALMIAS-CGQNKVAEKPPEPGDTAVARVNGQVIWASDVKREA 59

Query: 61  ALLKLQKINGELE------KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
               L      L+      +  + E+I + L   E  K  +  D                
Sbjct: 60  VAQGLISEGEPLDISSEVFRQRLDEVIDQKLLAAEAVKRKLDKDPLAQRRL--------- 110

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
                                     + +   +V+           +     +Q+  +  
Sbjct: 111 ---------------------AAARERILGDMLVEGVVEKAVTEDAIRKLYAEQQKLSKR 149

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGK 233
             E   R +L                     ++             + ++      + G 
Sbjct: 150 SEEIRARQILVGSQAEAES-----------IKKLLATGASFDALAMERSTDQATRFNGGD 198

Query: 234 AQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN 292
             Y     +   +   L    +     P+  + G   + + DKR    E         Q 
Sbjct: 199 LGYFTLDVMPEAYGAALKDAQKGALIGPFAAEGGWVLVKVEDKR--TEEPITLEAARPQI 256

Query: 293 TPTKIEKHEAEYVKKLRSNAIIH 315
                     + ++KLR +A + 
Sbjct: 257 IRFLTYDQVRDILEKLRGSAKVE 279


>gi|153837998|ref|ZP_01990665.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus
           AQ3810]
 gi|149748606|gb|EDM59465.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus
           AQ3810]
          Length = 459

 Score = 80.1 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 17/212 (8%), Positives = 54/212 (25%), Gaps = 13/212 (6%)

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
           A                     ++F +   ++  + ++       +    + ++     +
Sbjct: 41  AEFAKKVELTDEEIQAYYKANPDNFTRPEQVKVSYVELSAEALKKQIQVTDEDVKKYYDE 100

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HD 228
             +    E   R     +  +       +        +            ++ +      
Sbjct: 101 HLDKYSSEEQRRVAHILVEGDDEAKAQAI-------LDELNAGADFAAVAQEKSDDFGSA 153

Query: 229 VSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIAL 284
            + G   ++    + P F+      K+  + +    +  G   I + + +D        +
Sbjct: 154 ENGGDLGWIERDVMDPAFEEAAFALKNPGDMSGLVKSDFGYHIIKLEELKDAVAKPFDEV 213

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            A +  +    K      E   +L   A   Y
Sbjct: 214 AAEIKQELVDQKAVDQFYELQNELERVAF-EY 244


>gi|152984414|ref|YP_001350152.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           aeruginosa PA7]
 gi|150959572|gb|ABR81597.1| probable peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Pseudomonas aeruginosa PA7]
          Length = 314

 Score = 80.1 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 67/245 (27%), Gaps = 6/245 (2%)

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           ++A  EL     +     ++ +  + + +  +         L  +  +    ++      
Sbjct: 55  QVAPDELKALLAEVPAQTRAQLGENRDALERWMRARLAEKALYEQASAQDWQQRPEVKTL 114

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                    +   +     + +    + ++    +  K       L R     I      
Sbjct: 115 IDAATRQIVLRTYLESVSTVPEDYPSDADLHDAYEANKAQLGVPALYRVSQIFIATATAG 174

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESD--LHPQFQNLL 250
                +KR ++                K++       + G    LL     L      L 
Sbjct: 175 GPAEARKRAQELYRQAATG-DFAELARKYSDDPQTARNGGDIGGLLAQAQLLPAIRPALE 233

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
           +      + P     G   + + ++RD        ++  L A     + E+    Y+  L
Sbjct: 234 RLKVGEVSEPIQGGNGFHLVKLTERRDPRLASLDEVRERLRASLRAQRQEQIAKAYLDGL 293

Query: 309 RSNAI 313
            +NA 
Sbjct: 294 VNNAT 298


>gi|118594828|ref|ZP_01552175.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylophilales
           bacterium HTCC2181]
 gi|118440606|gb|EAV47233.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylophilales
           bacterium HTCC2181]
          Length = 627

 Score = 80.1 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 46/394 (11%), Positives = 106/394 (26%), Gaps = 93/394 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+  S    +  +    ++I F +  I SY S   S+     +NG  I+        
Sbjct: 1   MLDKIRNSTDSKLAKVILAIIIIPFALFGIDSYLSSVGSNVYIAKVNGVDISAQQYQNTE 60

Query: 61  ALLKLQK----------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF---V 107
           A+++ Q            + E +K  +  LI   L  Q I+K+G    +  ++ +     
Sbjct: 61  AMIREQMTDPNTDPALFDSPEFKKAVLDNLISTELMNQSIDKNGFVISNEQLSSYIVGMP 120

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD--------------------- 146
               N   S E +   +    +     +  +  Q                          
Sbjct: 121 DFQENGKFSQERYDQIVQYNNLTPKKLEDRIRTQMATQQAKDSINRLIYVPNEITQPLVN 180

Query: 147 ------------VVKNDFMLKYGNLEMEIPANKQKMKNITVRE---------YLIRTVLF 185
                       +  +D+  K    + E+     +  +  +           Y +  ++ 
Sbjct: 181 LAYQKRDISLHEIRLDDYKKKIKPTDDEVKQFYDENTSNFIMPDRVKIEFLIYSVAGIVP 240

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL-------------------------- 219
           +I  +  + + F        E ++ R  K                               
Sbjct: 241 TISVSNEEARQFFDANKGKFEANQQRRAKHILFAYQPGIDFEEKARIRDLAQTTLNEIKK 300

Query: 220 ---------EKFASKIHDVSIG-KAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVE 268
                    ++ +        G    +    D+   F + +     +  +    T+ G+ 
Sbjct: 301 SPKIFENKVKELSQDTESAKQGGDLGFFSRGDMVKPFADAVFGLKVDGLSGLVETEFGLH 360

Query: 269 YIAICDKR-DLGGEIALKAYLSAQNTPTKIEKHE 301
            I + D + +      +K  +  +    K     
Sbjct: 361 IIKLTDIKGEQVSFDKIKTQIKGELLYGKALDQY 394


>gi|17546463|ref|NP_519865.1| isomerase rotamase signal peptide protein [Ralstonia solanacearum
           GMI1000]
 gi|17428761|emb|CAD15446.1| putative isomerase rotamase signal peptide protein [Ralstonia
           solanacearum GMI1000]
          Length = 255

 Score = 80.1 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 65/277 (23%), Gaps = 48/277 (17%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           +NG  I    +   I     Q  + EL   A   LI   L +Q+    G           
Sbjct: 20  VNGHAIPSAKVDALIKK-SGQPESPELRNRARDMLIDRELIEQDATNRG----------- 67

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
                                  +      Q    Q+    +V  +F     N       
Sbjct: 68  -----------------------LLGRDDVQEQLAQARLNVLVAAEFEDYVKNSPTTDDD 104

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
            +++ + I  +    +           +                          +  +  
Sbjct: 105 LRKQYEKIKAQFGNGKEYHAHHILVDKEADAKA------IIAKLKAGGNFEEIAKAQSKD 158

Query: 226 -IHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDKRDL--GG 280
                + G   +       P+F   L    +   T  P  TQ G   I + D RD     
Sbjct: 159 KGSGANGGDLDWANPGTYVPEFSAALTGLKKGEVTQTPVKTQFGWHVIRLDDTRDAKIPA 218

Query: 281 EIALKAYLSAQNTPTK--IEKHEAEYVKKLRSNAIIH 315
              +K  L       +          +K LR  A I 
Sbjct: 219 FEDVKPQLLEMMMGDQNWQRAKFQAMLKDLREKATIK 255


>gi|150019698|ref|YP_001311952.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149906163|gb|ABR36996.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 248

 Score = 80.1 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/281 (10%), Positives = 78/281 (27%), Gaps = 38/281 (13%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
           M +++     G  IT+ D++  I+    ++      +   ++L+ + +  + + K G   
Sbjct: 1   MENKVLAVAAGYEITEKDLNAIISRYPQEQRGALQSEEKKKQLVEQLISFELMNKFGKEI 60

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
             +    +       +       +                            N  +    
Sbjct: 61  QLDKTQEYKDAMENISKEVITSMAI---------------------------NKVLSDVT 93

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             + E+    +  K    +   +      +   +  N+          EE         +
Sbjct: 94  ITDEEVKKYYEDNKEAFGQPATVSARHILVETEEEANKA--------REEILSGKISFGD 145

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR 276
              K+++   +   G      +  + P+F+           T P  TQ G   + +  K 
Sbjct: 146 AAMKYSTCPSNQQGGNLGEFSKGMMVPEFEEAAFTSEIGKVTEPVKTQFGYHLVLVDAKN 205

Query: 277 DL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +        +K  +          K   + +K+L +   + 
Sbjct: 206 EASIKSFEEVKDSVLDNLIKENQHKKYDQILKELEAKYGVE 246


>gi|309781979|ref|ZP_07676709.1| peptidyl-prolyl cis-trans isomerase family protein [Ralstonia sp.
           5_7_47FAA]
 gi|308919045|gb|EFP64712.1| peptidyl-prolyl cis-trans isomerase family protein [Ralstonia sp.
           5_7_47FAA]
          Length = 265

 Score = 80.1 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 65/279 (23%), Gaps = 46/279 (16%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              +NG+ I    +   I     Q  + EL   A   L+   L +Q+  K G+       
Sbjct: 27  AAVVNGKAIPSAKVDALIKK-SGQPESPELRARARDMLVDRELIEQDAAKRGL------- 78

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                   +            +  +     ++         +  
Sbjct: 79  -----------------------LERDDIQEQLAAARLNVLVAAEFEDYVKNSPATEDEL 115

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                +        +      +    +   +      K     E+             + 
Sbjct: 116 HKQYDKIKAQFGNGKEYHAHHILVDKEGDAKAIIAKLKAGAKFEDI---------AKAQS 166

Query: 223 ASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDKRDL-- 278
             K    + G   +       P+F   L    +   T  P  TQ G   I + D RD   
Sbjct: 167 KDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGQITQTPVKTQFGWHVIRLDDTRDAKI 226

Query: 279 GGEIALKAYLSAQNTPTK--IEKHEAEYVKKLRSNAIIH 315
                +K  L       +          +K LR  A I 
Sbjct: 227 PSYEDVKPQLLEMMMGDQNWQRSKFQAMLKDLREKAKIQ 265


>gi|302873039|ref|YP_003841672.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           cellulovorans 743B]
 gi|307688832|ref|ZP_07631278.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           cellulovorans 743B]
 gi|302575896|gb|ADL49908.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           cellulovorans 743B]
          Length = 247

 Score = 80.1 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/280 (9%), Positives = 86/280 (30%), Gaps = 39/280 (13%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS 99
           +++   +  + IT+ +I++ I  +  Q+      +     L+ E +  +      +    
Sbjct: 3   NKVLAVVKNKEITEQNINELIVRMPDQQRMYYDTEQGRARLLEELVSVEVFYNYALELKL 62

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
           +    F                              +    Q ++P +  ++        
Sbjct: 63  DESPAFL--------------------------EQLEGAKRQMLFP-IAADEVTKDVEIA 95

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
           + ++    +  + +  +  L                   +++ ++ +          +  
Sbjct: 96  DQDVADFYKNNRELFKKPELATASHIL---------VDSEEKAQEIKAEIEAGLSFADAA 146

Query: 220 EKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRD- 277
            K+++   +   G      +  + P+F+ +      N  ++P  TQ G   I + D +  
Sbjct: 147 AKYSTCPSNQRGGDLGQFQKGQMVPEFEEVAFTLPINKLSDPVKTQFGYHLIKVTDFQPE 206

Query: 278 -LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            +     ++  +  +    + +    E V +L+    + Y
Sbjct: 207 MIQDFDEVQVAIKEKMLQDRRQYKFLEKVDELKKLYNVEY 246


>gi|299066760|emb|CBJ37954.1| Putative Peptidylprolyl isomerase; exported protein [Ralstonia
           solanacearum CMR15]
          Length = 265

 Score = 80.1 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 66/276 (23%), Gaps = 46/276 (16%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           +NG  I    +   I     Q  + EL   A   LI   L +Q+  K G+          
Sbjct: 30  VNGHAIPSAKVDALIKK-SGQPESPELRNRARDMLIDRELLEQDATKRGL---------- 78

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
                                +            +  +     ++         +     
Sbjct: 79  --------------------LERDDVQEQLAQARLNVLVAAEFEDYVKNSPTTDDDLRKQ 118

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
            ++        +      +    +   +      K   + EE             +   K
Sbjct: 119 YEKIKAQFGNGKEYHAHHILVDKEADAKAIIAKLKAGGNFEEI---------AKAQSKDK 169

Query: 226 IHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDKRDL--GGE 281
               + G   +       P+F   L    +   T  P  TQ G   I + D RD      
Sbjct: 170 GSGANGGDLDWANPGTYVPEFSAALTGLKKGEVTQTPVKTQFGWHVIRLDDTRDAKIPAF 229

Query: 282 IALKAYLSAQNTPTK--IEKHEAEYVKKLRSNAIIH 315
             +K  L       +          +K LR  A I 
Sbjct: 230 EDVKPQLLEMMMGDQNWQRAKFQTMLKDLREKATIK 265


>gi|229043011|ref|ZP_04190742.1| Foldase protein prsA 2 [Bacillus cereus AH676]
 gi|228726351|gb|EEL77577.1| Foldase protein prsA 2 [Bacillus cereus AH676]
          Length = 285

 Score = 80.1 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/304 (8%), Positives = 76/304 (25%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + ++S       S    T     IT  +  K++             K  
Sbjct: 4   KHIFIITALISILMLSACGQKNGSATVATATDSTITKDNFEKQLK--------DRYGKDM 55

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           + E++ + +  ++ +      +                +  +    F           ++
Sbjct: 56  LYEMMAQDVITKKYKVPDEEVNKEVE-----------KVKKQYGDQFKKVLENYGLKDEE 104

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 105 DFKNQIKFKLAMNEAIKKSITEKDVKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ +             ++ +  +      G   Y     + P+F+    K + 
Sbjct: 145 SDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFNSGTMAPEFETAAYKLNV 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              +NP  +  G   I + DK+ L     +K  +       +        + +++    A
Sbjct: 205 GQISNPVKSSNGYHVIKLTDKKALKPYDEVKDSIRKNLEEERTADPVFSKKLLQEELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|222529840|ref|YP_002573722.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222456687|gb|ACM60949.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 340

 Score = 80.1 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/299 (9%), Positives = 88/299 (29%), Gaps = 23/299 (7%)

Query: 41  RIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL----------------IVET 84
           R+   +NGE +T  +   R   LK   I        + ++                I+  
Sbjct: 36  RVVLEVNGEQVTKREYKIRFNALKENAIQFSSRTDILDQVFNGKTYRELLKDELFTILTE 95

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
                 E      +        ++       + E+   + ++     +  + +       
Sbjct: 96  ELLCLQEARKRNINLTKQEEEEIKKYIQELKANEEMRGYFNQYLRKIDSDENHFYRDLYK 155

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
             ++   +        +              +    + +   +     +     ++    
Sbjct: 156 TRLINKLYSSITSKTTVSDSEIVNYYNTNKNQFKKRKIIDIFLKVENEEEDARKREIANK 215

Query: 205 AEESRLRLPKDCNKLEKFASKIHD-VSIGKAQYLLESDLHPQF-----QNLLKKSQNNTT 258
                 +       ++K++       + G   Y  + +   ++     + + K +    +
Sbjct: 216 IVSELKKGENFEKLVKKYSEDDSASTTKGIIDYFRKGEKEAEYGSVFEEEVFKLAVGQIS 275

Query: 259 NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           N   T KG   + + D++ +  +  +K  + ++    K ++    Y++ L+  + I+ Y
Sbjct: 276 NVIKTVKGYHIVKVLDEKYMPLDE-VKEEIQSKLMKQKKDEAFRLYIENLKKLSKINVY 333


>gi|330836446|ref|YP_004411087.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
           coccoides DSM 17374]
 gi|329748349|gb|AEC01705.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
           coccoides DSM 17374]
          Length = 354

 Score = 80.1 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/346 (11%), Positives = 92/346 (26%), Gaps = 46/346 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTIN---GEVITDGDISKRIALLKLQKINGEL 72
           +  +F+++   +    +  +  +S      +N     VIT   ++ ++   +        
Sbjct: 6   VRKFFIMVSIAVCAAGTLAAAVISQP-AAVVNLTKNTVITTEQLNAKVKEYQEAAATAGT 64

Query: 73  EK----IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS------AEDFSS 122
                   ++ +I + L  Q   + GI      V+   V   +              F  
Sbjct: 65  AAPDALRVLEIMINDELVMQGSARDGIVITDAQVSQLVVDQKQTLEQQYGVTLTDAQFQQ 124

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKN----DFMLKYGNLEMEIPANKQKMKNITVREY 178
            +  Q      F++ L  Q +    V+              + EI +  ++ ++      
Sbjct: 125 AVTAQFGSMEAFRKALKEQLLVDTYVRKAKSDVIAQVKQPTDTEISSFFRQRRSEFFSPE 184

Query: 179 LIRTVLFSIPDN-----KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIG 232
            IR     IP       +  N       I      R         ++ ++         G
Sbjct: 185 SIRLSHVFIPFAEGTDAQKTNDANKATLISLVSSIRSGSLTFEKAVQDYSQDAASRQLGG 244

Query: 233 KAQYLLESDLH-------PQFQNLLKKSQNNTTNPYVTQKGVEYIA-----------ICD 274
              +L   +           +           +N   +  G   +            + D
Sbjct: 245 SIGWLTADNSDVVASLGQGFYDAAFALEVGQISNVVESASGYHILKSVSHLDAKMLGLDD 304

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHE----AEYVKKLRSNAIIHY 316
             +    + ++ Y+         +          ++ LRS A I  
Sbjct: 305 TINPETTVTVREYIRQYLLAQNQQTAYVNAVNALIQDLRSLANIRI 350


>gi|315635801|ref|ZP_07891063.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri JV22]
 gi|315479780|gb|EFU70451.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri JV22]
          Length = 269

 Score = 80.1 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 91/299 (30%), Gaps = 42/299 (14%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA--LLKLQKINGELEKIAVQE 79
           ++   +  I    +   +     T+NGE IT  DI+  +    +   K+  E +   +++
Sbjct: 4   IVSSLVASIALATALNAADVSYATVNGENITKQDIAMALQDPRVDFDKLPQEAKTQILEQ 63

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           ++   L  Q     G+  D+  V                                     
Sbjct: 64  IVNMKLIAQHAIDDGVEKDAKYVEA-------------------------------MKKI 92

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
             ++  +V + + + K    E +     +K K   V           +           +
Sbjct: 93  KSNLALEVWQKNEIDKIKVTEADKKDFYEKNKEKFVEPETFEASHILVKTE-----AEAK 147

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT- 258
             I   +++  ++ K     +K        + G         + P+F + +K     T  
Sbjct: 148 DIISQLDKASNKVEKFKELSKKSLDTASAKNGGALGRFAVEQMVPEFGSAVKALAKGTYS 207

Query: 259 -NPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             P  TQ G   I + DK          ++  ++       + K   E V+ LR +A I
Sbjct: 208 KTPVKTQFGYHVIYLKDKFPSKTFAYTEVEKNINQVLIGNALNKKIKELVEDLRKDAKI 266


>gi|307244093|ref|ZP_07526212.1| putative peptidylprolyl isomerase PrsA1 [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492617|gb|EFM64651.1| putative peptidylprolyl isomerase PrsA1 [Peptostreptococcus
           stomatis DSM 17678]
          Length = 353

 Score = 80.1 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/309 (11%), Positives = 91/309 (29%), Gaps = 22/309 (7%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK-------- 67
           +     +++  +V + +    +       +++G+ I+  +  +++   KL          
Sbjct: 1   MKKVLAILLAAVVGLSTVACSSDD---VASVDGKGISKKEYIEQLKFTKLMYEMQYGDKI 57

Query: 68  ------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
                  N E ++   + ++   +K +         +         Q+ +    + E+  
Sbjct: 58  WDQMKSQNKEYQETVKKNVLQSMVKSRVYLSYAEKNNVKPDEKVLSQYKKKNKEAFENAK 117

Query: 122 SFLDKQGIGDNHFKQYLAIQSI--WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
           +    +  G +        +       ++           E      + +   +     L
Sbjct: 118 AKEKFEKAGIDQAFMDKYSEQAATMTSLLNFLQKKAMPTEEEVKAKFETEGDKLDASHIL 177

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLL 238
           I+TV  +      + +   +K+ +D  +            +K +         G      
Sbjct: 178 IKTVDDNNKPLSDEKKAEAKKKAEDLLKQLKSGTDFAELAKKNSQDPGSAAKGGALGEFG 237

Query: 239 ESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
           +  +  +F+       +   +    TQ G   I +  KR        K  +       KI
Sbjct: 238 KGQMVSEFEKAAFALKEGEISPIVETQFGYHIIKLN-KRVKADYEKSKDKIKTSLINEKI 296

Query: 298 EKHEAEYVK 306
           +K   E VK
Sbjct: 297 KKLVDEIVK 305


>gi|282880885|ref|ZP_06289578.1| PPIC-type PPIASE domain protein [Prevotella timonensis CRIS 5C-B1]
 gi|281305267|gb|EFA97334.1| PPIC-type PPIASE domain protein [Prevotella timonensis CRIS 5C-B1]
          Length = 489

 Score = 80.1 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 81/290 (27%), Gaps = 20/290 (6%)

Query: 33  YKSWAMSSRIRTTINGEVITDGDIS-------KRIALLKLQKINGELEKIAVQELIVETL 85
               ++   +   +  E I   D+              K        E IAVQ+L +   
Sbjct: 44  MPENSVIDEVIWVVGDEPIMKSDVEMTRLQSEAEGVKFKGNPDYSIPEHIAVQKLFLHQA 103

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
           +   +E       ++       +     G SAE   ++  +         +     ++  
Sbjct: 104 ELDSVEIPEAQVTASIERQ-INRWIEMAGGSAERLEAYRGQTISQMRSQLRDDFRNNLLV 162

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
             ++   +        ++ A  + +   ++        +  I          + +   + 
Sbjct: 163 QNMQEKLVQDVKVTPSDVRAYFKDLPADSIPFVPTEVEVEIITRKPKILPEEINRVKNEL 222

Query: 206 EESRLRLPKDCNKLEKFASKIH-----DVSIGKAQYLLESDLHPQFQNLLKKSQN--NTT 258
                R+          A             G+  Y+    L P F N+     +    +
Sbjct: 223 RNFTNRVTSGETSFATLARLYSEDPGSARQGGEMDYMGRGMLDPDFANVAFNLTDPKKIS 282

Query: 259 NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
               T+ G   I + DKR   G+     ++     P   ++   + + +L
Sbjct: 283 KIVETEFGYHIIQLIDKR---GDKIKVRHIL--LKPKVSDEEVQKVLVRL 327


>gi|145588566|ref|YP_001155163.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046972|gb|ABP33599.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 279

 Score = 80.1 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/315 (13%), Positives = 92/315 (29%), Gaps = 48/315 (15%)

Query: 9   LSDFIKLLT---TYFVLIIFCIVPIVSYKSWAMSSRI--RTTINGEVITDGDISKRIALL 63
           +   I  L       +     +    S  +      I    ++NG +IT+  + + I + 
Sbjct: 1   MKLLISRLKPSVAQLITSSILLGCFGSAFAQQSGLPINAAASVNGAIITNDMVEQGIKVA 60

Query: 64  KLQKING--ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
             Q      EL K  +Q+ +   L  Q+ EK G+                     A    
Sbjct: 61  ISQGQKDSPELRKAVIQKFVEVMLLSQQAEKDGLA----------------NSEKANSQL 104

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
           + + +  + D     ++A   I    V+ ++  +  +L  +                   
Sbjct: 105 ALIRQNYLADLELSTFMAQNPITDADVQAEYNREVSSLGPQG------------------ 146

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
                            +   + A +   +           +   +    G A ++    
Sbjct: 147 ---MITEYKISDIAVATEAEAQAALDRIKKGEPFDKVARSVSLGPNKAQGGAAGWVQPGQ 203

Query: 242 LHPQFQNLLKKSQNN--TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
           + PQ  ++L         + P   Q+G   + + DK+                    I+K
Sbjct: 204 VPPQIGSVLATLGKGQVCSAPIQMQQGWYLVKVEDKKSSKP--PTFEQAKQAVRAGLIQK 261

Query: 300 HEAEYVKKLRSNAII 314
            + E+V K+  ++ I
Sbjct: 262 KQYEFVAKIAKDSKI 276


>gi|257093852|ref|YP_003167493.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046376|gb|ACV35564.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 635

 Score = 80.1 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/382 (8%), Positives = 82/382 (21%), Gaps = 94/382 (24%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKR-------------IAL 62
           +    + + F    + SY   + +     ++    IT     +                 
Sbjct: 15  VFLALITLPFAFWGVDSYVRNSGAGTDLASVGDSKITRPQFDQAWRVQQDRMRQVLGANF 74

Query: 63  LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF---FVQHARNTGLSAED 119
                   E +   +  L+ + L   E  K  +    + +            N   S   
Sbjct: 75  RPESMNTPEAKLAVLNSLVDQRLLLIEAAKDRLAVGDDLLREVIGKIPALQENGQFSLAR 134

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN----------------------------- 150
           + + L  QG+  + F+  +        +V                               
Sbjct: 135 YRAVLAAQGMSQSQFEAQVRQDLTLQQLVAAIGDTGIASTTTADAMLRIQSEERQVAELR 194

Query: 151 ----DFMLKYGNLEMEIPANKQKMKNITVREYLIR-------------------TVLFSI 187
                F+ +       +        N        +                     +   
Sbjct: 195 FSPDQFLERVQVDPAAVRKFYDDNANRFEIAEQAKAEFVVLSLDGLLEKAKVSDAEVTGW 254

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI--------------------- 226
            ++        ++R             D  K    A ++                     
Sbjct: 255 YESHKDRYQQPEERRASHILILANADVDREKARAKAEEVLKEIQKSPGRFAELAKQHSQD 314

Query: 227 --HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR--DLGGE 281
                  G   +     +   F++   K  +N  +    ++ G   I +   +       
Sbjct: 315 PGSAEKGGDLGFFGRGMMVKAFEDTVFKAQENEVSGLVQSEFGYHIIKVTGIKVGTQRAL 374

Query: 282 IALKAYLSAQNTPTKIEKHEAE 303
           + ++  + A+       +  AE
Sbjct: 375 VDVRPEIEAELKRQAASRQFAE 396


>gi|16127297|ref|NP_421861.1| peptidyl-prolyl cis-trans isomerase family protein [Caulobacter
           crescentus CB15]
 gi|13424717|gb|AAK25029.1| peptidyl-prolyl cis-trans isomerase family protein [Caulobacter
           crescentus CB15]
          Length = 314

 Score = 80.1 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 76/303 (25%), Gaps = 51/303 (16%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE------K 74
           ++I  C    V+ K           +NG+VI   D+ +      L      L+      +
Sbjct: 11  LMIASCGQNKVAEKPPEPGDTAVARVNGQVIWASDVKREAVAQGLISEGEPLDISSEVFR 70

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             + E+I + L   E  K  +  D                                    
Sbjct: 71  QRLDEVIDQKLLAAEAVKRKLDKDPLAQRRL----------------------------- 101

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                 + +   +V+           +     +Q+  +    E   R +L          
Sbjct: 102 -AAARERILGDMLVEGVVEKAVTEDAIRKLYAEQQKLSKRSEEIRARQILVGSQAEAES- 159

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQF-QNLLKK 252
                      ++             + ++      + G   Y     +   +   L   
Sbjct: 160 ----------IKKLLATGASFDALAMERSTDQATRFNGGDLGYFTLDVMPEAYGAALKDA 209

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
            +     P+  + G   + + DKR    E         Q           + ++KLR +A
Sbjct: 210 QKGALIGPFAAEGGWVLVKVEDKR--TEEPITLEAARPQIIRFLTYDQVRDILEKLRGSA 267

Query: 313 IIH 315
            + 
Sbjct: 268 KVE 270


>gi|218234193|ref|YP_002367583.1| peptidylprolyl isomerase [Bacillus cereus B4264]
 gi|218162150|gb|ACK62142.1| foldase protein PrsA [Bacillus cereus B4264]
          Length = 280

 Score = 80.1 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 86/305 (28%), Gaps = 44/305 (14%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +     V+    +   +S  +   S  I TT +G  I++ D +K++             K
Sbjct: 1   MKRKKLVIGSILMGMTLSLSACGSSDNIVTTKSGS-ISESDFNKKLK--------ENYGK 51

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             + E++VE +   + + +                        E      D         
Sbjct: 52  QNLSEMVVEKVLHDKYKVTDEEVT---------------KQLKELKDKMGDNFNTYMESN 96

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                 Q      +   F         E          + V   L++             
Sbjct: 97  GVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYKPKLQVSHILVK------------- 143

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK- 252
               +K  K+ +E            ++++         G+        +  +F++   K 
Sbjct: 144 ---DEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVKEFEDAAYKL 200

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
                + P  +  G   I + DK++L      K  +  +    +I+  +   +  ++L  
Sbjct: 201 EVGQLSEPVKSSFGYHIIKLMDKKELKPYEEEKENIRKELEQQRIQDPQFHQQVTRELLK 260

Query: 311 NAIIH 315
           NA I 
Sbjct: 261 NADIK 265


>gi|312792832|ref|YP_004025755.1| ppic-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179972|gb|ADQ40142.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 339

 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/322 (11%), Positives = 94/322 (29%), Gaps = 24/322 (7%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI----- 60
               +  +       VL+I  I        +   +R    +NGE IT  + +        
Sbjct: 1   MDKRTKIVLFSIAAVVLLIILIAVTPEIVRYVDENRAVAIVNGEKITKKEFAINYRSQIN 60

Query: 61  ----------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
                       +  +    ++++  +  LI+  ++ Q+  K  IT  S        Q  
Sbjct: 61  YYGLDKAFLSQKVGDKTYEQQIKENVLDGLIIRQIELQQARKRNITLSSAEKKAIDQQIE 120

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
           +    S         +        +     Q I   +V   +     N +      +   
Sbjct: 121 QYKSDSQSGAEF--KQYLQTIGATENEYKDQVIKSQIVSKLYDEVTKNQKASDAEIESYY 178

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDV 229
            +       ++        N  + +   +K+ ++  +            +K++       
Sbjct: 179 NSHKSDFVEVKASHILFKVNDSKEEAAKKKKAEEILQMIKVGQNFEKLAQKYSEDETTKQ 238

Query: 230 SIGKAQYLLESDLHPQFQNLLKKS-----QNNTTNPYVTQKGVEYIAICDKRDLGGEIAL 284
             G   YL ++ +   + N    +         +N   T  G   I + D++ L     +
Sbjct: 239 KGGDMGYLRKNIIIQYYGNEFGNAVFSLGIGEISNIVQTNDGFHIIKVTDRKQLLL-SDV 297

Query: 285 KAYLSAQNTPTKIEKHEAEYVK 306
           K  + +     K +++    ++
Sbjct: 298 KDEIKSTIESQKKDEYYQSLLE 319


>gi|209965938|ref|YP_002298853.1| peptidyl-prolyl cis-trans isomerase family protein, putative
           [Rhodospirillum centenum SW]
 gi|209959404|gb|ACJ00041.1| peptidyl-prolyl cis-trans isomerase family protein, putative
           [Rhodospirillum centenum SW]
          Length = 315

 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/283 (10%), Positives = 74/283 (26%), Gaps = 47/283 (16%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGE---LEKIAVQELIVETLKKQEIEKSGIT 96
           + +   +NG+ I   ++   +  L  Q        +    +++++   L  Q   K  + 
Sbjct: 47  NPVVARVNGKEIRRTEVLAALQQLPPQVQQLPLPMVYPAVLEQVVNAHLVTQAGFKDKLQ 106

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
             +                                    +    + +    +K     K 
Sbjct: 107 DTTEVK------------------------------QRLKAAEERFVQEAFLKKAIDAKM 136

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
            +  ++   ++   +N    E   R +L    +        ++               + 
Sbjct: 137 SDALVKKKFDEWLKENPPQDEVRARHILVQTKEEAEALIKQIK----------GGADFNK 186

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICD 274
              ++          G   Y  +  +   F +        + +  P  TQ G   I + D
Sbjct: 187 LAADQKIDTAAAQQQGDLGYFTKDQMVEPFAKAAFAMKPGDVSQTPVETQFGWHVIKVED 246

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           KR            + +      +    + V+ LR  A +  +
Sbjct: 247 KRKQTP--PTYEEAAPELRQVVAQDIAGDVVEGLRKQAKVEMF 287


>gi|222149929|ref|YP_002550886.1| peptidyl-prolyl cis-trans isomerase [Agrobacterium vitis S4]
 gi|221736911|gb|ACM37874.1| peptidyl-prolyl cis-trans isomerase [Agrobacterium vitis S4]
          Length = 291

 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/284 (10%), Positives = 70/284 (24%), Gaps = 48/284 (16%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLK---LQKINGELEKIAVQELIVETLKKQEIEKSG 94
               +   +    I   ++   IA L     Q  + + +  A+   I   L         
Sbjct: 24  ADDAVVAKVGTLEIHQSELDLAIANLDPQFAQMPDDQKKVAALSGAIDVKLLAGSAIGEK 83

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
           +  D                                      ++A + +     K   + 
Sbjct: 84  MQDDPAYK------------------------------QRMAFIADRELHNAFFKKHVVD 113

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
              + E++    K+       +E   R +L    D        +                
Sbjct: 114 VTTDEEVKARYEKEIAALPKEQEIHARHILVKTEDEAKDVIKQLDA-----------GKD 162

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAI 272
                ++ ++       G   +  +  + P+F+           T  P  +Q G   I +
Sbjct: 163 FAELAKEKSTDSSGSDGGDLGFFSKGRMVPEFEEAAFALKPGTYTKTPVKSQFGFHVIKV 222

Query: 273 CDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + RD          +  Q     +       ++K +++  +  
Sbjct: 223 EEIRDAAP--PKFEDVQQQVRQLVMRDKYLALLEKAKTSEKVEI 264


>gi|326622155|gb|EGE28500.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 611

 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/360 (9%), Positives = 88/360 (24%), Gaps = 84/360 (23%)

Query: 37  AMSSRIRTTINGEVITDGDISKRIALLKLQKING----------------ELEKIAVQEL 80
             S+     +NG+ I+           + +                     L +  +  L
Sbjct: 24  GGSNNYAAKVNGQGISRAQFENAFNNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRL 83

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQY 137
           I E L  Q   +  +      V                    +++ +++ G+  + + Q 
Sbjct: 84  IDEALLDQYSRELKLGISDEQVKQAIFATPAFQVDGKFDNNRYNAIVNQMGMTADQYAQA 143

Query: 138 LAIQSIWPDVVK---------------------------------NDFMLKYGNLEMEIP 164
           L  Q     ++                                  N    K    + E+ 
Sbjct: 144 LRNQLTTQQLINGVAGTDFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVS 203

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE----------------- 207
           +   + K   +     R     +    +Q            ++                 
Sbjct: 204 SYYDQNKVRFMTPEQFRVSYIKLDAATMQAPVSDADIQAYYDQHVDQFTQPERIRYSIIQ 263

Query: 208 ------------SRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQ 254
                       +  +        ++ ++  I   + G   +L ES   P+ +N   K +
Sbjct: 264 TKTEDDAKAVLDALNKGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNAGLKEK 323

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
              +    +  G     + D +    +    ++  ++A+    K         +K+   A
Sbjct: 324 GQISGVIKSSVGFLVARLDDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDAA 383


>gi|107103386|ref|ZP_01367304.1| hypothetical protein PaerPA_01004456 [Pseudomonas aeruginosa PACS2]
 gi|296387613|ref|ZP_06877088.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Pseudomonas aeruginosa PAb1]
 gi|313109291|ref|ZP_07795259.1| putative peptidyl-prolyl cis-trans isomerase [Pseudomonas
           aeruginosa 39016]
 gi|310881761|gb|EFQ40355.1| putative peptidyl-prolyl cis-trans isomerase [Pseudomonas
           aeruginosa 39016]
          Length = 272

 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/183 (11%), Positives = 67/183 (36%), Gaps = 5/183 (2%)

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI-RTVLFSIPDNKLQNQGFV 198
            ++    +++ +  +   + +            +     L  R VL +   + L+ +   
Sbjct: 79  EEARIRQLLEEEVQVPEADEDACRTWYAANPGRLLGPWRLQLRHVLLACAPDDLEGRETA 138

Query: 199 QKRIKDAEESRLRLPKDC-NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT 257
           +K+  +  +     P+   +   +F++     + G   ++      P+F+  L +     
Sbjct: 139 RKQAAELLDELRGHPERFVDLARRFSACPSKEAGGDLGWIEPGQTVPEFEKRLLRRAPGL 198

Query: 258 TN-PYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              P  ++ G+  + +  +   +     A +A ++A      +++   +Y+  L  +A I
Sbjct: 199 LEHPLESRYGLHVVELLAREGGEPLDFDAARAQIAAHLQAQVLQRAVGQYIGVLAGDACI 258

Query: 315 HYY 317
             +
Sbjct: 259 EGF 261


>gi|254236772|ref|ZP_04930095.1| hypothetical protein PACG_02782 [Pseudomonas aeruginosa C3719]
 gi|126168703|gb|EAZ54214.1| hypothetical protein PACG_02782 [Pseudomonas aeruginosa C3719]
          Length = 272

 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/183 (11%), Positives = 67/183 (36%), Gaps = 5/183 (2%)

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI-RTVLFSIPDNKLQNQGFV 198
            ++    +++ +  +   + +            +     L  R VL +   + L+ +   
Sbjct: 79  EEARIRQLLEEEVQVPEADEDACRTWYAANPGRLLGPWRLQLRHVLLACAPDDLEGRETA 138

Query: 199 QKRIKDAEESRLRLPKDC-NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT 257
           +K+  +  +     P+   +   +F++     + G   ++      P+F+  L +     
Sbjct: 139 RKQAAELLDELRGHPERFVDLARRFSACPSKEAGGDLGWIEPGQTVPEFEKRLLRRAPGL 198

Query: 258 TN-PYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              P  ++ G+  + +  +   +     A +A ++A      +++   +Y+  L  +A I
Sbjct: 199 LEHPLESRYGLHVVELLAREGGEPLDFDAARAQIAAHLQAQVLQRAVGQYIGVLAGDACI 258

Query: 315 HYY 317
             +
Sbjct: 259 EGF 261


>gi|121604540|ref|YP_981869.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas
           naphthalenivorans CJ2]
 gi|120593509|gb|ABM36948.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas
           naphthalenivorans CJ2]
          Length = 645

 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/204 (11%), Positives = 54/204 (26%), Gaps = 11/204 (5%)

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
            +A     +  D   +           +Q      +                E ++    
Sbjct: 201 DYAAKLTPTDADLEQYYKANEKLFQAPEQASIEYVLLDL---EALKKGIAVNEADLKTYY 257

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
           ++           R     I  +K  +    +K    AEE    + K        A K  
Sbjct: 258 EQNARQLSGTEERRASHILITASKTASPEEREKAKTKAEELLATVKKSPENFADVARKNS 317

Query: 228 -----DVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR--DLG 279
                  + G   +     +   F++     ++ + +    +  G   I + D +     
Sbjct: 318 QDPGSATNGGDLDFFARGAMVKSFEDAAFSMNKGDISEVVASDFGYHIIKLTDIKAPKQR 377

Query: 280 GEIALKAYLSAQNTPTKIEKHEAE 303
               ++  L A+    + +K  +E
Sbjct: 378 TFEEMRPQLEAELQKQQAQKKFSE 401



 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 62/233 (26%), Gaps = 22/233 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK-- 58
           M   +       + LL    ++  F +V + S  S      +   ++G  IT  +  +  
Sbjct: 1   MFDFIRKHTKWTMALLFL-LIVPSFILVGMNSNPSSEKG-GVVAKVDGTEITQPEWDREH 58

Query: 59  --RIALLKLQKI--------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
              +  L+            + E     ++ ++ + +     EK  ++     +      
Sbjct: 59  LKEVDRLRASMPTLDAKLLDSPEARYATLERMVRDRVVAVAAEKLKLSTSDQHLARELQN 118

Query: 109 -------HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML-KYGNLE 160
                     +  L  + +   L  QG+    F+  +        V+          N  
Sbjct: 119 SPEIAALRRADGSLDMDRYRQLLGTQGMSPEMFEANVRTDLSRRQVLAGVSGSGFASNSA 178

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
            ++  N    K              +       +     K  +   ++  +  
Sbjct: 179 ADMALNAYFEKREIQLARFNAADYAAKLTPTDADLEQYYKANEKLFQAPEQAS 231


>gi|229016515|ref|ZP_04173456.1| Foldase protein prsA 2 [Bacillus cereus AH1273]
 gi|229022723|ref|ZP_04179247.1| Foldase protein prsA 2 [Bacillus cereus AH1272]
 gi|228738535|gb|EEL89007.1| Foldase protein prsA 2 [Bacillus cereus AH1272]
 gi|228744782|gb|EEL94843.1| Foldase protein prsA 2 [Bacillus cereus AH1273]
          Length = 269

 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 78/291 (26%), Gaps = 43/291 (14%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
           ++S       S    T     IT  D  K++             K  + E++ + +  ++
Sbjct: 1   MLSACGQKNDSATIATTTNSTITKSDFEKQLK--------DRYGKDMLYEMVAQDVITKK 52

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
            + S    D                   +  ++  + +   +  F+  +  +    + +K
Sbjct: 53  YKVSDDAVDKEVE-------KAKNQYGDQFKAALENNRLKDEKDFQDQIRFKLALNEAIK 105

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
                K                             +             +   K+ ++  
Sbjct: 106 QSVTEKDIKD------------------------HYKPEIKASHILVSDENEAKEIKKKL 141

Query: 210 LRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGV 267
                     ++ +   +   + G   Y     + P+F+    K      +NP  +  G 
Sbjct: 142 DTGASFEELAKQESQDSLSKDNGGDLGYFRAGKMTPEFEKAAYKLKPGQISNPVKSPNGY 201

Query: 268 EYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE--AEYVKKLRSNAIIHY 316
             I + DK+DL     +K  +       +I       + ++     A I  
Sbjct: 202 HIIKLTDKKDLEPYDEVKGSIRKDLEEERIADPSFGQKLLQDELKKADIKI 252


>gi|116619198|ref|YP_821354.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116222360|gb|ABJ81069.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 644

 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 78/262 (29%), Gaps = 7/262 (2%)

Query: 56  ISKRIALLKLQKINGELEKIAVQELI-VETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
           I +  A LK Q        IA++  I      +   +K         V     ++   + 
Sbjct: 144 IDQFEADLKRQVAISRFRDIAMEGTIVTPAEIEAAFKKKNEKIKVEWVKLTADKYKGESQ 203

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
            SA++   F           ++         +  K    L   + +++   ++ K    T
Sbjct: 204 PSAQELQDFYKANVSRYTVPEKRNLTVLTADEA-KMSASLNITDADLQRVYDQNKEAFRT 262

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGK 233
                 R +L          +  ++ + +   +            ++ +      V+ G 
Sbjct: 263 PERVKARHILLKTQGKPASEEAAIKAKGESLLKQIKAGGDFAKLAKENSEDPGSAVNGGD 322

Query: 234 AQ-YLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ 291
              ++    +  +F + +        ++   TQ G   +    K+D G      A +   
Sbjct: 323 LGDWITHGQMVAEFDKAIFALKPGEVSDLVKTQYGYHIVQTLAKQDAGMRT--FAEVKGD 380

Query: 292 NTPTKIEKHEAEYVKKLRSNAI 313
                 ++  +E +++    A 
Sbjct: 381 LATQYKKQRVSELMQQASDRAQ 402



 Score = 41.6 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 39/317 (12%), Positives = 86/317 (27%), Gaps = 25/317 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPI----VSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           +F S    +++L    + ++   +            + S  +   I  + IT  ++ + I
Sbjct: 4   LFRSRDKMVRILLGALLGVVALSMLTYLVPNYNTGSSTSDVVVAEIGKDTITLPEMQRVI 63

Query: 61  ALL--KLQKINGELEK---IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
                  Q     L       V +++ E     E E+ G       V     Q   +   
Sbjct: 64  QATIRGRQLPTEILPTYIPQMVDQMVTERAMAMEAERLGYQVSDADVADSIRQMVPSLFP 123

Query: 116 S-----AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                  E +++ L +Q +  + F+  L  Q                       A K+K 
Sbjct: 124 DGKFVGKETYAAMLAQQNMTIDQFEADLKRQVAISRFRDIAMEGTIVTPAEIEAAFKKKN 183

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS 230
           + I V    +    +         +     +   +  +              A     ++
Sbjct: 184 EKIKVEWVKLTADKYKGESQPSAQELQDFYKANVSRYTVPEKRNLTVLTADEAKMSASLN 243

Query: 231 IGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA 290
           I               Q +  +++     P   +     +     +    E A+KA   +
Sbjct: 244 ITD----------ADLQRVYDQNKEAFRTPERVKAR-HILLKTQGKPASEEAAIKAKGES 292

Query: 291 QNTPTKIEKHEAEYVKK 307
                K     A+  K+
Sbjct: 293 LLKQIKAGGDFAKLAKE 309


>gi|221067844|ref|ZP_03543949.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni KF-1]
 gi|220712867|gb|EED68235.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni KF-1]
          Length = 632

 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/405 (10%), Positives = 99/405 (24%), Gaps = 102/405 (25%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK-- 58
           M   +    S F+ +L    ++  F  V + +   +  SS+    ++G  IT  D     
Sbjct: 1   MFESIR-KHSKFVMILLFLLIIPSFIFVGV-NQNYFTESSQTVARVDGHDITQQDWDNAH 58

Query: 59  --RIALLKLQKI--------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
                 L+ Q          + E     +++L+ + +      K  +T     +     +
Sbjct: 59  RAESDRLRAQNPSMDAKLLDSPEARYATLEKLVRDRVLAAAATKMHLTTPDAQLVRTLRE 118

Query: 109 -------HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
                     +  L AE + + +  QG+    F+  L  +     V+             
Sbjct: 119 IPAIASLQKPDGSLDAEAYKALVGSQGMTPEGFEANLRRELALNQVLGAVSSTSFTTAAQ 178

Query: 152 -----------------------FMLKYGNLEMEIPANKQKMKNITVR------------ 176
                                  F  K    E E+ A  +   +   +            
Sbjct: 179 LQQAMDALYQRREIQVARFDASAFAGKVQPTEAELKAFYESHTSQFKQPEAATVEYVQLD 238

Query: 177 -----------------EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK- 218
                             Y       + P+ +  +   +          R +      + 
Sbjct: 239 LATVEKSIVLSEDDLRTYYKENAARLAGPEERRASHILINAAKDLPAAEREKAKAKAEQL 298

Query: 219 ----------LEKFASKIH-----DVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYV 262
                       + A           + G   Y     +   F+  + K  Q + ++   
Sbjct: 299 LAQVRKDPKSFAQVAKANSQDPGSAANGGDLGYFGRDAMVKPFEEAVFKMKQGDISDVVE 358

Query: 263 TQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
           +  G   I +   +           +  +      ++       +
Sbjct: 359 SDFGFHIIELTGIKQPKV--PTFEEMRPKLEADLKQQQAQRKFAE 401


>gi|152980819|ref|YP_001354064.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Janthinobacterium
           sp. Marseille]
 gi|151280896|gb|ABR89306.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Janthinobacterium
           sp. Marseille]
          Length = 307

 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/312 (7%), Positives = 68/312 (21%), Gaps = 28/312 (8%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M S +  +L      + T   +++  ++ + S    A   ++  +     I   +I++  
Sbjct: 1   MKSNINQALPG----VRTAIGVLLASVMGM-SAAQSAAPDKVVASAGSVTIGQNEITR-- 53

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
               LQ +                                  +   ++ A++ G      
Sbjct: 54  ---LLQGMPEAERAAIKNN----------RAGVENWLRQRVTSEALLREAQSKGWGERPE 100

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
                     +   +            V   +                     +      
Sbjct: 101 VKAKVDAAAREVTARIVSTSYLESVAQVPATYPSDAEVKAAYEQGKANFNLPAS----YR 156

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
              ++              +       ++ R           +         G+   L  
Sbjct: 157 VAQIYLASTGTDAAATTKLRDEAKKLATQARGGDFAALARSRSQDPRSAERGGEVGMLPL 216

Query: 240 SDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTK 296
             +       + K      + P  +  G   + + + +         +K  L       +
Sbjct: 217 EQMLPEVRDAVAKLKVGQVSEPVQSPSGFHIVKLLETQPARTATLEEIKPRLQTALRDQR 276

Query: 297 IEKHEAEYVKKL 308
            ++    ++  L
Sbjct: 277 QQQLIQAHMAGL 288


>gi|228939979|ref|ZP_04102553.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228972874|ref|ZP_04133469.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228979455|ref|ZP_04139787.1| Foldase protein prsA 1 [Bacillus thuringiensis Bt407]
 gi|228780273|gb|EEM28508.1| Foldase protein prsA 1 [Bacillus thuringiensis Bt407]
 gi|228786747|gb|EEM34731.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819591|gb|EEM65642.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
          Length = 303

 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 85/305 (27%), Gaps = 44/305 (14%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           L     V+    +   +S  +   S  I TT +G  I++ D +K++             K
Sbjct: 24  LKRKKLVIGSILMGMTLSLSACGSSDNIVTTKSGS-ISESDFNKKLK--------ENYGK 74

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             + E++VE +   + + +                        E      D         
Sbjct: 75  QNLSEMVVEKVLNDKYKVTDEEVT---------------KQLKELKDKMGDNFNTYMESN 119

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                 Q      +   F         E          + V   L++             
Sbjct: 120 GVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYKPKLQVSHILVK------------- 166

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK- 252
               +K  K+ +E            ++++         G+        +  +F++   K 
Sbjct: 167 ---DEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVKEFEDAAYKL 223

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
                + P  +  G   I + DK++L      K  +  +    +I+  +   +  + L  
Sbjct: 224 EVGQLSEPVKSSFGYHIIKLTDKKELKPYEEEKENIRKELEQQRIQDPQFHQQVTRDLLK 283

Query: 311 NAIIH 315
           NA I 
Sbjct: 284 NADIK 288


>gi|94263261|ref|ZP_01287077.1| PpiC-type peptidyl-prolyl cis-trans isomerase [delta
           proteobacterium MLMS-1]
 gi|93456344|gb|EAT06468.1| PpiC-type peptidyl-prolyl cis-trans isomerase [delta
           proteobacterium MLMS-1]
          Length = 630

 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/248 (8%), Positives = 63/248 (25%), Gaps = 7/248 (2%)

Query: 60  IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
           +   +       L +  +  L+       +  +    +D + V   +++ A      A  
Sbjct: 145 VKEFEQGIRTDLLRRKIIDHLVGFAQVSDDEVRQRFHYDHDQVRLAYLRLAAADFKPAST 204

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
            S+   +    +N              ++           E EI A  +  +        
Sbjct: 205 PSAEELEAFFQENSQDYLSPPMVRLDYLLFTPEREPEAIAEEEIVAYYEANREEFSLPEQ 264

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL---EKFASKIHDVSIGKAQY 236
            R     I      +      R +       R     +       ++      + G   +
Sbjct: 265 RRARHILIRSADNDSPELRASRKEQLRAVLERARAGHDFAELVALYSEDARA-AGGDLGF 323

Query: 237 LLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEI--ALKAYLSAQNT 293
               ++    +           ++   T+ G   + + + +         ++  ++ +  
Sbjct: 324 FQRDEMVEPIEEAAFALEPGEISDIVETRFGFHILKLDELQPARQLELAEVRDEIADRLQ 383

Query: 294 PTKIEKHE 301
             +I+   
Sbjct: 384 DEEIQDES 391



 Score = 35.8 bits (80), Expect = 8.5,   Method: Composition-based stats.
 Identities = 27/290 (9%), Positives = 69/290 (23%), Gaps = 16/290 (5%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--ELEKIAVQEL-IVE 83
            +  +              +N E ++  +  +R      Q  +    +    ++ L I E
Sbjct: 25  FIFWLPQMGGDGGPGTVAVVNEEPLSLREFQRRYNETLSQYRDEFGVIPPDLLEALGIRE 84

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            + +Q I++  +   +                   +  S  +          +       
Sbjct: 85  QVLQQLIQEQLLLQSAKKTGLPATSSEVQR-----EIQSMGEFSDEAGRFDLERYRQTLT 139

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
              +   +F        +        +    V +  +R       D        +     
Sbjct: 140 AARLSVKEFEQGIRTDLLRRKIIDHLVGFAQVSDDEVRQRFHYDHDQVRLAYLRLAAADF 199

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL-------LESDLHPQFQNLLKKSQNN 256
               S     +     ++ +       + +  YL        E+    +     + ++  
Sbjct: 200 KP-ASTPSAEELEAFFQENSQDYLSPPMVRLDYLLFTPEREPEAIAEEEIVAYYEANREE 258

Query: 257 TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
            + P   +     I   D        + K  L A     +     AE V 
Sbjct: 259 FSLPEQRRARHILIRSADNDSPELRASRKEQLRAVLERARAGHDFAELVA 308


>gi|225850929|ref|YP_002731163.1| SurA N- domain family [Persephonella marina EX-H1]
 gi|225645389|gb|ACO03575.1| SurA N- domain family [Persephonella marina EX-H1]
          Length = 286

 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 100/304 (32%), Gaps = 27/304 (8%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +     ++++  +V   +     +  +I   +NG+ +   +I        ++      +K
Sbjct: 1   MRVLLSLILLVMMVVSSAISEEKLLDKIVLVVNGKPVLKSEIELAKEWYGVKSDKEAAKK 60

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG-LSAEDFSSFLDKQGIGDNH 133
                LI + +  Q  EK GI      V+   ++ AR     S  +F   L+++G+  + 
Sbjct: 61  -----LIDQIILAQAAEKVGIHATPTEVDNAILRLARMNRLGSVNEFKKRLEERGLVFSL 115

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
           FK  +  + +    V                           +   +R +     D    
Sbjct: 116 FKDLIKREIVISKFVHIYLKRNL------------FEGIEEGKAVDLRKIRLIYLDKSKP 163

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK 252
                     +  +  +         ++++         G    + + DL       + +
Sbjct: 164 GFNEK----YEILKKLVNKEPFDKLAKEYSDDPVTAEKGGLLGEVKKGDLVKTLDKPIWE 219

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
            +        T KGV +I I    +   +  +    + +    K++K    Y+KKL+ NA
Sbjct: 220 HKVGDIFEIDTDKGVYFIKI----ESEEKKIVHQEPTGEEVNKKLQKEVELYLKKLKENA 275

Query: 313 IIHY 316
           ++ Y
Sbjct: 276 VVEY 279


>gi|42780354|ref|NP_977601.1| peptidylprolyl isomerase [Bacillus cereus ATCC 10987]
 gi|42736273|gb|AAS40209.1| protein export protein prsA [Bacillus cereus ATCC 10987]
          Length = 285

 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/285 (9%), Positives = 70/285 (24%), Gaps = 41/285 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + ++S       S    T     IT  D  K++             K  
Sbjct: 4   KHIFIITALLSILMLSACGQKNDSDTVATATDSTITKSDFEKQLK--------DRYGKDM 55

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           + E++ + +  ++ + S    D            +   +   +                 
Sbjct: 56  LYEMMAQDVITKKYKVSDDDVDKELQKAKNQYGDQFKNVLKNNGLKDEADF--------- 106

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 107 --KNQIKFKLAMNEAIKKSITEKDVKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ ++            ++ +  +      G   Y     + P+F+    K   
Sbjct: 145 SDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYKLKV 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
              +NP  +  G   I + DK+ L     +K  +       +I  
Sbjct: 205 GQISNPVASPNGYHIIKLTDKKALKPYDEVKDSIRKNLEEERISD 249


>gi|332532266|ref|ZP_08408147.1| peptidyl-prolyl cis-trans isomerase PpiD [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038364|gb|EGI74809.1| peptidyl-prolyl cis-trans isomerase PpiD [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 633

 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/398 (10%), Positives = 110/398 (27%), Gaps = 96/398 (24%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+       +  +    V++ F +  I SY            +NG  I+  D ++  
Sbjct: 1   MLEKIREGSQGPVAKIILGAVILSFALAGIGSYLGQTTEQP-VAEVNGIKISQTDFNRAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                    ++ +  V  L+ + L+ Q     G+     +V  
Sbjct: 60  QNERSRLEQQFGEYFTQIAADPNYMAQIRQGVVDRLVQQELQSQLAADLGLRVSDESVRK 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
             ++          + + +   + +     + F++YL        VV             
Sbjct: 120 TILELPYFQIGEKFNNDRYLQVIRQMNFQPDAFREYLRKDMTRSQVVSAVAGTDFALESE 179

Query: 149 --------------------KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF--- 185
                               K          + E+        +  +   LI        
Sbjct: 180 LKSAIALQQQTRSIDYVVVNKEALAANVEVSDQEVSDYYDLNASQFLSPELISVSYIELK 239

Query: 186 --------SIPDNKLQNQGFVQKRIKDAEE-----SRLRLPKDCNKLEKFASKIHDV--- 229
                      D+        + +  + E+       +   +D +  ++ A+ +H     
Sbjct: 240 AADINVESVTDDDVKAYYEQNKAQYVEPEKRRVSHILIDNSEDDDAAKEKANALHAQLEQ 299

Query: 230 -------------------SIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVE 268
                                G  +++    + P F++     +++ + ++   ++ G  
Sbjct: 300 GADFAELAQSSSDDIVSGEMGGDLEWIERDVMDPAFEDAAFALENKGDISDVVTSEFGYH 359

Query: 269 YIAICDKRD--LGGEIALKAYLSAQNTP-TKIEKHEAE 303
            I + D +   +     +KA L A+     KI+    +
Sbjct: 360 IIKLTDIQPQQVKAYDDVKADLRAELEQAEKIDAFYEK 397


>gi|326792525|ref|YP_004310346.1| copper amine oxidase-like domain-containing protein [Clostridium
           lentocellum DSM 5427]
 gi|326543289|gb|ADZ85148.1| copper amine oxidase-like domain-containing protein [Clostridium
           lentocellum DSM 5427]
          Length = 444

 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/308 (10%), Positives = 67/308 (21%), Gaps = 31/308 (10%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDI----SKRIALLKLQKIN----------GELEKIAV 77
           +         +   +    IT  +I       + +L+ Q              +  +   
Sbjct: 139 AITPGITGHAVVAKVGDLTITAKEILTQLDYEMMMLQYQYQYDDSFFETEEAKQYMEQRK 198

Query: 78  QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK--QGIGDNHFK 135
            EL+   +K +     G                  T    E  + F              
Sbjct: 199 GELVDYIIKNKVALIKGRELKLEPTVTEVNNEFNKTKEDYETAAEFEKALVNSGLTTEGY 258

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +     S+    V           + EI A  +                  +   +    
Sbjct: 259 KTQIKDSLTISNVAKYISKNIPVTDAEIKAYYESNSGNYTMPPGAEMAHILVATEEEAKA 318

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD---LHPQFQNLLKK 252
              +           +        +K+ +     + G+  Y+                  
Sbjct: 319 IKAE---------YDKGTSFAELAKKYGTDGTKDTGGELGYIAYDSSYYDQDFLDGAKTL 369

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGE---IALKAYLSAQNTPTKIEKHEAEYVKKLR 309
            +   +NP  TQ G   I + +      +     +K  L       K  +     + +  
Sbjct: 370 EEGQVSNPVKTQFGWHLIKVLNVHKEAYKVLLEEIKEDLKNIIISEKATEFIYSQLDEWG 429

Query: 310 SNAIIHYY 317
               I  Y
Sbjct: 430 KEMTIEKY 437


>gi|326803153|ref|YP_004320971.1| putative peptidylprolyl isomerase PrsA3 [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651580|gb|AEA01763.1| putative peptidylprolyl isomerase PrsA3 [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 340

 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/311 (11%), Positives = 87/311 (27%), Gaps = 34/311 (10%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING 70
            F K  T   V  +      ++      +     T +   IT G ++ ++  +       
Sbjct: 2   KFKKKFTLGLVSSLCAFT--LAACQSQSNDSAVATGDDIKITQGQLNDQMKKVAG----- 54

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
                 +++LI+  + KQE+ K          +          G + +  +         
Sbjct: 55  ---DQTLRQLILSEISKQEVGKDRYKEIEQETDQQIAATKAQVGDNDKFQNVLKSSGVPS 111

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
           +  +K+ L   ++  + +K +  +    L+      +                       
Sbjct: 112 EEAYKESLIQYTLTQEALKKNIPVSDEELKKAYEDYEPAA-------------------E 152

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL 249
                   +   KD  +   +        ++ +         G    + +  +  +F++ 
Sbjct: 153 ISHILVEDENEAKDIIKQLDQGGDFSALAKEHSKDPGSKEKGGSLGQVEKGQMVKEFEDA 212

Query: 250 LKK-SQNNTT-NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEA--EYV 305
             K ++   T  P  +Q G   I +  K         K  L+ Q    K++      +  
Sbjct: 213 AFKLNEGEYTKEPVKSQYGYHIIKLDKKGQKSSFEDEKDNLTEQVKNKKMQDPSTLLQVT 272

Query: 306 KKLRSNAIIHY 316
             L     I  
Sbjct: 273 SDLLKKYNIDI 283


>gi|260591263|ref|ZP_05856721.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Prevotella
           veroralis F0319]
 gi|260537128|gb|EEX19745.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Prevotella
           veroralis F0319]
          Length = 478

 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/256 (10%), Positives = 70/256 (27%), Gaps = 14/256 (5%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--GELEKIAVQELIVETLKKQEIEK 92
           +  +   +   +  E I   ++       + + +   G+ E +  +++ V+ L   +   
Sbjct: 47  ANNVVDEVIWVVGDEPILKSEVEIMKLQGEAEGMKWDGDPECVLPEQIAVQKLFLHQAAL 106

Query: 93  SGITFDSNTVNYFFVQHARNTG--LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
             +    + +     Q                  + Q       +Q L        +V+ 
Sbjct: 107 DSVEVTESEIAQGVDQQINYWISLPQIGSKEKLEEFQHKSIAQLRQDLHDDYKNRQLVQK 166

Query: 151 ---DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
                +        E+    +K+   ++        +  +          V +      +
Sbjct: 167 MQAKLVGDVKVSPAEVREYFRKLPVDSIPMIPTTVEVEILTQTPKVEPEEVNRIKNQLRD 226

Query: 208 SRLRLPKDCNKLEKFASKIHD-----VSIGKAQYLLESDLHPQFQNLLKKSQN--NTTNP 260
              R+ K        A    +        G+  Y+    L P F  +     +    +  
Sbjct: 227 YTDRVTKGETSFATLARLYSEDPGSSRQGGELGYMGRGMLDPAFAAVAFNLTDPKKVSKI 286

Query: 261 YVTQKGVEYIAICDKR 276
             ++ G   I + D+R
Sbjct: 287 VESEFGYHIIQLIDRR 302


>gi|228921530|ref|ZP_04084852.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838149|gb|EEM83468.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 293

 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 86/305 (28%), Gaps = 44/305 (14%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           L     V+    +   +S  +   S  I TT +G  I++ D +K++             K
Sbjct: 14  LKRKKLVIGSILMGMTLSLSACGSSDNIVTTKSGS-ISESDFNKKLK--------ENYGK 64

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             + E++VE +   + + +                        E      D         
Sbjct: 65  QNLSEMVVEKVLNDKYKVTDEEVT---------------KQLKELKDKMGDNFNTYMESN 109

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                 Q      +   F         E          + V   L++             
Sbjct: 110 GVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYKPKLQVSHILVK------------- 156

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK- 252
               +K  K+ +E            ++++         G+        +  +F++   K 
Sbjct: 157 ---DEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVKEFEDAAYKL 213

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
                + P  +  G   I + DK++L      K  +  +    +I+  +   +  ++L  
Sbjct: 214 EVGQLSEPVKSSFGYHIIKLTDKKELKPYEEEKENIRKELEQQRIQDPQFHQQVTRELLK 273

Query: 311 NAIIH 315
           NA I 
Sbjct: 274 NADIK 278


>gi|116747610|ref|YP_844297.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116696674|gb|ABK15862.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 632

 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/256 (7%), Positives = 61/256 (23%), Gaps = 5/256 (1%)

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             +        L     ++++V   +     ++           F  +   +     E  
Sbjct: 150 KDIAESIAYERLLNFIKRQVVVTDEEVTADYRTNYGQVQIAYALFDPKSFEDKVTVDEQG 209

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
           +    +         +      +                +M    +    +    ++   
Sbjct: 210 AQEYFQNHRERYMEPEKRRFSLVLYKPEAYMDQAGVTGDDMRRYYDDHISEYRHEQQVRA 269

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAE-ESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLL 238
           R +LF + ++  + +    +   +       +         K++       + G      
Sbjct: 270 RQILFRLKEDAAEEEIAKARSEAEKVLAEARKGKDFAELARKYSQDTATAKNGGDLGAFT 329

Query: 239 ESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPT 295
              +   F +      +   ++   T  G   I + +            ++ +       
Sbjct: 330 RGQMLEPFSDAAFAMKKGEISDLVETPDGFHIIKVEEIIPEKTTSFEEARSGIEQAVKRQ 389

Query: 296 KIEKHEAEYVKKLRSN 311
           K  +   E  +KL   
Sbjct: 390 KAREAAYEKARKLLDQ 405



 Score = 44.3 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 31/324 (9%), Positives = 84/324 (25%), Gaps = 30/324 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M +        ++  +    +L+    V        + S      I+ E I++ D     
Sbjct: 1   MLNLFREHSKSWM--IKALLILVAIVFVWWGGATYQSKSDTAVVQIDDEFISERDYYNVY 58

Query: 61  ALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
             +  +                  L+   +  LI   L  +   + G++  +  V    +
Sbjct: 59  EKMVTRYRTQLGKAWSEKLVEEMNLKGQVLDMLINRYLVSKAARELGLSASTEEVRRRIL 118

Query: 108 QHARNTGLSAEDFSSFLD--KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
           ++         D  ++    +Q        +    +SI  + + N    +    + E+ A
Sbjct: 119 EYPVFLNDGRFDQLTYERVLRQERLTPEGFEKDIAESIAYERLLNFIKRQVVVTDEEVTA 178

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ--KRIKDAEESRLRLPKDCNKLEKFA 223
           + +         Y +           +  QG  +  +  ++      +        +  A
Sbjct: 179 DYRTNYGQVQIAYALFDPKSFEDKVTVDEQGAQEYFQNHRERYMEPEKRRFSLVLYKPEA 238

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIA 283
                   G        D   ++++  +                    + +         
Sbjct: 239 YMDQAGVTGDDMRRYYDDHISEYRHEQQVRARQI-----------LFRLKEDAAEEEIAK 287

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKK 307
            ++         +  K  AE  +K
Sbjct: 288 ARSEAEKVLAEARKGKDFAELARK 311



 Score = 37.0 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 24/253 (9%), Positives = 70/253 (27%), Gaps = 10/253 (3%)

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
            E      Q +  +  ++   EK+    D         + A    +       ++ +   
Sbjct: 376 EEARSGIEQAVKRQKAREAAYEKARKLLDQVYAKKDLAKSAEEQNMPVTGGDMWIAETDP 435

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                     I     ++ + DF   +   +  + A    ++   V  +           
Sbjct: 436 LPGFQTPLADISRKLFELPEKDFSDIFDTPQGYLIAQVTGIQPPQVPSFDKVKQRVEKDC 495

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLE--KFASKIHDVSIG-----KAQYLLESDL 242
              + +   Q++  +  ++  +           K A +  D           + L    +
Sbjct: 496 RAERARVLAQQKAAELLDAARKANSLETAASGLKLAVRKSDWFSRHAPDKDLRLLRGGAV 555

Query: 243 HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR-DLGGEIALKAYLSAQNTPTKIEKHE 301
              F+    +   +++             +  +R   G    ++A +  + T  K     
Sbjct: 556 DQVFRLEENQPFPDSS--LEFGNRFLVCQLLGRRLPEGELEKVRADIVKRLTQQKQSMMW 613

Query: 302 AEYVKKLRSNAII 314
             ++++ R  + I
Sbjct: 614 TAWLQEQRGKSKI 626


>gi|229128201|ref|ZP_04257182.1| Foldase protein prsA 1 [Bacillus cereus BDRD-Cer4]
 gi|228655060|gb|EEL10917.1| Foldase protein prsA 1 [Bacillus cereus BDRD-Cer4]
          Length = 303

 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 85/305 (27%), Gaps = 44/305 (14%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           L     V+    +   +S  +   S  I TT +G  I++ D +K++             K
Sbjct: 24  LKRKKLVIGSILMGMTLSLSACGSSDNIVTTKSGS-ISESDFNKKLK--------ENYGK 74

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             + E++VE +   + + +                        E      D         
Sbjct: 75  QNLSEMVVEKVLHDKYKVTDEEVT---------------KQLEELKDKMGDNFNTYMESN 119

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                 Q      +   F         E          + V   L++             
Sbjct: 120 GVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYKPKLQVSHILVK------------- 166

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK- 252
               +K  K+ +E            ++++         G+        +  +F++   K 
Sbjct: 167 ---DEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVKEFEDAAYKL 223

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
                + P  +  G   I + DK++L      K  +  +    +I+  +   +  + L  
Sbjct: 224 EVGQLSEPVKSSFGYHIIKLTDKKELKPYEEEKENIRKELEQQRIQDPQFHQQVTRDLLK 283

Query: 311 NAIIH 315
           NA I 
Sbjct: 284 NADIK 288


>gi|229046560|ref|ZP_04192211.1| Foldase protein prsA 1 [Bacillus cereus AH676]
 gi|228724735|gb|EEL76041.1| Foldase protein prsA 1 [Bacillus cereus AH676]
          Length = 303

 Score = 79.7 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 86/305 (28%), Gaps = 44/305 (14%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           L     V+    +   +S  +   S  I TT +G  I++ D +K++             K
Sbjct: 24  LKRKKLVIGSILMGMTLSLSACGSSDNIVTTKSGS-ISESDFNKKLK--------ENYGK 74

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             + E++VE +   + + +                        E      D         
Sbjct: 75  QNLSEMVVEKVLHDKYKVTDEEVT---------------KQLKELKDKMGDNFNTYMESN 119

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                 Q      +   F         E          + V   L++             
Sbjct: 120 GVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYKPKLQVSHILVK------------- 166

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK- 252
               +K  K+ +E            ++++         G+        +  +F++   K 
Sbjct: 167 ---DEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVKEFEDAAYKL 223

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
                + P  +  G   I + DK++L      K  +  +    +I+  +   +  ++L  
Sbjct: 224 EVGQLSEPVKSSFGYHIIKLTDKKELKPYEEEKENIRKELEQQRIQDPQFHQQVTRELLK 283

Query: 311 NAIIH 315
           NA I 
Sbjct: 284 NADIK 288


>gi|94310820|ref|YP_584030.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cupriavidus
           metallidurans CH34]
 gi|93354672|gb|ABF08761.1| Peptidyl-prolyl cis-trans isomerase [Cupriavidus metallidurans
           CH34]
          Length = 647

 Score = 79.7 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/267 (10%), Positives = 63/267 (23%), Gaps = 27/267 (10%)

Query: 52  TDGDISKRIALLKLQKI-------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           T   +  R+      +           + K  +  LI    ++++++   I         
Sbjct: 149 TPEQLDARMRFELSTQQLGGAIGTTAFVPKSLLDRLIAIRDQQRDVQ--AIVIKPADFTA 206

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
                A       E   +           +             +             ++ 
Sbjct: 207 KVTPDAAALKAYYESHLAAYTMPEQAKVEYLVLSGDALAASQTI----------TPDQLK 256

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
           +           +   R     I   K   +   +   + AE+    L K  +     A 
Sbjct: 257 SYYDSNIQRFHTDEQRRASHILIAAPKDGKEADRKAAKEKAEKLLEDLRKHPDTFADVAK 316

Query: 225 KIH-----DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL 278
           K           G   ++    L   F++ +        ++   T  G   I +   +  
Sbjct: 317 KNSQDPGSAEKGGDLGFMGRGALVKPFEDAMFALKDGQISDVVETDYGYHIIKLTGIKPA 376

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAE 303
             E   A++  L  +       K   E
Sbjct: 377 ATEPLEAVRPELEIELKKQLAAKAYTE 403



 Score = 50.8 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/144 (10%), Positives = 39/144 (27%), Gaps = 20/144 (13%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN-------------G 70
            F    + SY  +  SS     ++G  IT  ++   +     +                 
Sbjct: 23  SFVFFGVESYSRFMDSSHDAAKVDGRAITVQEVDNVVRDQSERMRQMLGNNYDPRMFEGP 82

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA-------RNTGLSAEDFSSF 123
              +  + +LI + +  +  +K  +T     +                +     + +   
Sbjct: 83  AARQAVLDQLIQQRVISEATQKKHLTVSDAQIAAAIQSIPAIAQLRTADGKFDEKAYVQL 142

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDV 147
           L  QG+        +  +     +
Sbjct: 143 LAAQGMTPEQLDARMRFELSTQQL 166


>gi|228959094|ref|ZP_04120794.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229145438|ref|ZP_04273824.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST24]
 gi|228638014|gb|EEK94458.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST24]
 gi|228800603|gb|EEM47520.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 303

 Score = 79.7 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 85/305 (27%), Gaps = 44/305 (14%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           L     V+    +   +S  +   S  I TT +G  I++ D +K++             K
Sbjct: 24  LKRKKLVIGSILMGMTLSLSACGSSDNIVTTKSGS-ISESDFNKKLK--------ENYGK 74

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             + E++VE +   + + +                        E      D         
Sbjct: 75  QNLSEMVVEKVLHDKYKVTDEEVT---------------KQLKELKDKMGDNFNTYMESN 119

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                 Q      +   F         E          + V   L++             
Sbjct: 120 GVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYKPKLQVSHILVK------------- 166

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK- 252
               +K  K+ +E            ++++         G+        +  +F++   K 
Sbjct: 167 ---DEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVKEFEDAAYKL 223

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
                + P  +  G   I + DK++L      K  +  +    +I+  +   +  + L  
Sbjct: 224 EVGQLSEPVKSSFGYHIIKLTDKKELKPYEEEKENIRKELEQQRIQDPQFHQQVTRDLLK 283

Query: 311 NAIIH 315
           NA I 
Sbjct: 284 NADIK 288


>gi|212550918|ref|YP_002309235.1| peptidyl-prolyl cis-trans isomerase SurA [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549156|dbj|BAG83824.1| peptidyl-prolyl cis-trans isomerase SurA [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 480

 Score = 79.7 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/323 (10%), Positives = 102/323 (31%), Gaps = 18/323 (5%)

Query: 2   TSKVFTSLSDFIKLLTTYF--VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKR 59
              +   L  ++  L  +   ++++  +   +      +   +  TI  EVI   D+   
Sbjct: 10  LQNISKWLIYYVIHLNKFIHSIIVLTLVSSGLINAQSNVIDEVVWTIGNEVILRSDVENV 69

Query: 60  IALLKLQKI--NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
              +++      G+   +  ++L ++ L  ++ +   I    + V+        +     
Sbjct: 70  RLQMQINNQYIEGDPYCVIPEQLAIQKLYLRQAKLDSINIPESQVSQMTESWINHLIDQI 129

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWP---DVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
                  +  G   +  ++              ++N  +        +I     ++   +
Sbjct: 130 GSKEKVEEYCGKPISVLREEKKQAIREQGMIQAMQNKLVSGVKVTPSDIRNFYNQIPQDS 189

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-----HDV 229
           +        +  I    L     +    +  +E    +     +    A          +
Sbjct: 190 LPFIPTTVEVEIITLKPLVTLEEINNIKQKLKEYIELVTSGQKEFSTLARLYSEDINSAM 249

Query: 230 SIGKAQYLLESDLHPQFQNLLKK--SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY 287
             G+  ++ +S L P+F  +  +  +    +    T+ G   I + +K+   G+     +
Sbjct: 250 KGGELNFVCKSSLSPEFAAVAFELSNPKKVSRIVETEYGYHIIQLIEKK---GDRINVRH 306

Query: 288 LSAQNTPTKIEKHEAEY-VKKLR 309
           +  +   TK E  +  Y +  +R
Sbjct: 307 ILLKPHATKEELAKVSYRLDSIR 329


>gi|294508706|ref|YP_003572765.1| Foldase protein prsA [Precursor] [Salinibacter ruber M8]
 gi|294345035|emb|CBH25813.1| Foldase protein prsA [Precursor] [Salinibacter ruber M8]
          Length = 342

 Score = 79.7 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 15/265 (5%), Positives = 61/265 (23%), Gaps = 7/265 (2%)

Query: 53  DGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
              +   +      + + +  +   ++LI    ++  +       + +            
Sbjct: 69  QQQVRMSMKRQAPSQQSEDQMQETHRQLIRGFARQHALRGEAKAQNLDVDPTQVNARLEK 128

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
                E    F  +    +       ++ +      +    +     E          + 
Sbjct: 129 LKQRYESEEQFQKQLARNNMTVDSVRSLLADQFRQQQLQRQMAENYEEPSSDDVTAYSEK 188

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
                     +       + +     +      + +++          + +        G
Sbjct: 189 NRRIRAQHILIKAGENAPESEVDSARKAAAALVDSAKMEDVDFAELARRHSQGPSAQKGG 248

Query: 233 KAQYLLESDLHPQFQNLLK--KSQNNTT-NPYVTQKGVEYIAICDKRDLGGEIALKAYLS 289
              +     +  +F           +    P  T+ G   I + +  +            
Sbjct: 249 DLGFFTRDRMVDKFAEAAYALSDSGDVAPEPVHTRFGFHVIRLTNAGEPMDTTKA----R 304

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAII 314
            Q T  + ++   + +  L  +A +
Sbjct: 305 KQMTKERRQQAVEDQINALLEDATV 329


>gi|312621942|ref|YP_004023555.1| ppic-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202409|gb|ADQ45736.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 340

 Score = 79.7 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/299 (9%), Positives = 88/299 (29%), Gaps = 23/299 (7%)

Query: 41  RIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL----------------IVET 84
           R+   +NGE +T  +   R   LK   I        + ++                I+  
Sbjct: 36  RVVLEVNGEQVTKREYKIRFNALKENAIQFSSRTDILDQVFNGKTYRELLKDELFTILTE 95

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
                 E      +        ++       + E+   + ++     N  + +       
Sbjct: 96  ELLCLQEARKRNINLTKQEEEEIKKYIQELKTNEEMRGYFNQYLRKINSDENHFYRDLYK 155

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
             ++   +        +              +    + +   +     +     ++    
Sbjct: 156 TRLINKLYSSITSKTTVSDSEIINYYNTNKNQFKKRKIIDIFLKVENEEEDARKREIANK 215

Query: 205 AEESRLRLPKDCNKLEKFASKIHD-VSIGKAQYLLESDLHPQF-----QNLLKKSQNNTT 258
                 +       ++K++       + G   Y  + +   ++     + + K +    +
Sbjct: 216 IVSELKKGESFEKLVKKYSEDDGASTTKGIIDYFRKGEKEAEYGSVFEEEVFKLAVGQIS 275

Query: 259 NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           N   T KG   + + D++ +  +  +K  + ++    K ++    Y++ L+  + I+ Y
Sbjct: 276 NVIKTVKGYHIVKVLDEKYMPLDE-VKEEIQSKLMKQKKDEAFRLYIENLKKLSKINVY 333


>gi|282878158|ref|ZP_06286955.1| PPIC-type PPIASE domain protein [Prevotella buccalis ATCC 35310]
 gi|281299736|gb|EFA92108.1| PPIC-type PPIASE domain protein [Prevotella buccalis ATCC 35310]
          Length = 476

 Score = 79.7 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 86/304 (28%), Gaps = 40/304 (13%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K +     +++ C     S      +  +  TING+ IT  +              G +
Sbjct: 1   MKKMKKLLTIMLCC----SSMALAQQTDPVVMTINGQPITRSEFEYSYN---KNNAEGVI 53

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +K  V E +   +  +    +      +T                               
Sbjct: 54  DKKTVDEYVDLFINYKLKVMAAQAAKMDTARS--------------------------FK 87

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF-SIPDNK 191
                   Q I P ++             EI    Q+  +          +LF     + 
Sbjct: 88  TEFATYRDQQIRPAMIT---DADVEQRAREIYRESQQRVDGVGGLVKPAHILFGIRQTDG 144

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLL 250
              +   ++R      + L+         + +         G+  ++ +     +F+++ 
Sbjct: 145 EDKKNQAKQRADSVYNALLKGADFAALARQLSDDRGSAEQGGELPWIEKGQTLKEFEDMA 204

Query: 251 KK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT-KIEKHEAEYVKKL 308
               +   + P+++  G   + + DK       +L+  +          E+  ++ ++ L
Sbjct: 205 FSLRKGELSKPFLSPAGYHIVLLKDKGKFFPYDSLRTSILRFIEQRGIREQIISQKIETL 264

Query: 309 RSNA 312
              A
Sbjct: 265 AKAA 268


>gi|226327126|ref|ZP_03802644.1| hypothetical protein PROPEN_00991 [Proteus penneri ATCC 35198]
 gi|225204344|gb|EEG86698.1| hypothetical protein PROPEN_00991 [Proteus penneri ATCC 35198]
          Length = 135

 Score = 79.7 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 47/127 (37%), Gaps = 3/127 (2%)

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-L 250
            ++    K  + + + R       +   +++      +  G+  + +     P F++  +
Sbjct: 2   SDEQAYAKLQQISADIRSGKITFADAAREYSEDPGSALRGGELGWSMPDVYDPAFRDALM 61

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
           + ++N  + P  +  G   I + D R +   + A K          K  +    ++++LR
Sbjct: 62  RLNKNELSQPVRSNFGWHLIELEDTRSVDKTDAANKEQAYRLLFNRKFNEEVQNWMQELR 121

Query: 310 SNAIIHY 316
             A +  
Sbjct: 122 VGAYVKI 128


>gi|77459915|ref|YP_349422.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           fluorescens Pf0-1]
 gi|77383918|gb|ABA75431.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens Pf0-1]
          Length = 623

 Score = 79.7 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/268 (11%), Positives = 87/268 (32%), Gaps = 10/268 (3%)

Query: 54  GDISKRIALLKLQKINGELEKIAVQELIV----ETLKKQEIEKSGITFDSNTVNYFFVQH 109
             + +++   ++Q      +++ + +L                +    +  T ++  +  
Sbjct: 137 DQVIRQLGYSRMQFRQMLAQEMLIGQLRAGVAGSGFVTDAQVLAFARLEKQTRDFATLNI 196

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
             +                     F     +   + ++ K+ F  +    + ++ A  QK
Sbjct: 197 KADPSAVKLTDDEVKAYYDEHAKEFMTPDQVVIDYLELKKSSFFDQVAVKDEDLQAAYQK 256

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HD 228
                  +     +L  + D   +     + +I++ +    +  K     ++F+      
Sbjct: 257 EIANLSEQRRAAHILIEVNDKTTE--AQAKAKIEEVQARLAKGEKFEALAKEFSQDPGSA 314

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALK 285
            + G   Y       P F+  L   +++  + P  T  G   I +      ++    +LK
Sbjct: 315 NNGGDLGYAGPGVYDPAFEKALYSLNKDQVSEPVRTDFGFHLIKLLGVEAPEVPTLASLK 374

Query: 286 AYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             L+ +    ++E+   E  K+L  ++ 
Sbjct: 375 DKLTRELKTQQVEQRFVEATKQLEDSSF 402



 Score = 68.9 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/322 (10%), Positives = 83/322 (25%), Gaps = 27/322 (8%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++ +  +    +             +NGE I+  ++S+ +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIVALMALTGFDAIFQATTHKNEAAKVNGEEISQNELSQAV 60

Query: 61  ALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
            + + Q +                L + A++ LI   L  Q  E+S   F    ++   +
Sbjct: 61  DMQRRQLMQQLGKDFDASLLDEKMLRESALKGLIDRKLLLQGAEQSKFAFSEAALDQVIL 120

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
           Q              F         + +           ++        G+  +      
Sbjct: 121 QTPEFQVDGKFSSDRFDQV-IRQLGYSRMQFRQMLAQEMLIGQLRAGVAGSGFVTDAQVL 179

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
              +            + + P         V+    +  +  +   +      +      
Sbjct: 180 AFARLEKQTRDFATLNIKADPSAVKLTDDEVKAYYDEHAKEFMTPDQVVIDYLELKKSSF 239

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY-IAICDKRDLGGEIALKA 286
                         +  + ++L    Q    N    ++     I + DK       A   
Sbjct: 240 F-----------DQVAVKDEDLQAAYQKEIANLSEQRRAAHILIEVNDKTTEAQAKAKIE 288

Query: 287 YLSAQNTP-TKIEKHEAEYVKK 307
            + A+     K E    E+ + 
Sbjct: 289 EVQARLAKGEKFEALAKEFSQD 310


>gi|196043445|ref|ZP_03110683.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus 03BB108]
 gi|225864299|ref|YP_002749677.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus 03BB102]
 gi|196025754|gb|EDX64423.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus 03BB108]
 gi|225788486|gb|ACO28703.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus 03BB102]
          Length = 283

 Score = 79.7 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/308 (9%), Positives = 84/308 (27%), Gaps = 48/308 (15%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKINGELE 73
           +      L       +++  +   S  + T  +    IT+ ++SK +          +  
Sbjct: 1   MKKKKLFLGTIISCVVLALSACGSSDNVVTSKVGN--ITEKELSKELK--------QKYG 50

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           +  + ++++      + + S                     +     S+        ++ 
Sbjct: 51  ESTLYQMVLSKALLDKYKVSDEEAKKQVEE-------AKDKMGDNFKSTLEQVGLKNEDE 103

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
            K+ +  +  +   +K     K      +       +                       
Sbjct: 104 LKEKMKPEIAFEKAIKATVTEKDVKDNYKPEMKVSHILVKD------------------- 144

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK 252
                +K  K+ +E            ++++         G+           +F+    K
Sbjct: 145 -----EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYK 199

Query: 253 -SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY----VKK 307
                 + P  T  G   I + DK++L     +K  +       +++    ++    V +
Sbjct: 200 LDAGQVSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNE 259

Query: 308 LRSNAIIH 315
           L  +A I 
Sbjct: 260 LLKDADIK 267


>gi|257065468|ref|YP_003145140.1| parvulin-like peptidyl-prolyl isomerase [Slackia heliotrinireducens
           DSM 20476]
 gi|256793121|gb|ACV23791.1| parvulin-like peptidyl-prolyl isomerase [Slackia heliotrinireducens
           DSM 20476]
          Length = 438

 Score = 79.7 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/300 (11%), Positives = 77/300 (25%), Gaps = 36/300 (12%)

Query: 42  IRTTINGEVITDGDISKRIALLKLQK-----------------INGELEKIAVQELIVET 84
           +  T+NG  I +  I+  I   +                       +L    +   + +T
Sbjct: 47  VAATVNGVEIGENSITGYIEDFRSLNGLTEDAAWAEWMVNAGYTAEDLRSEVINYYVNQT 106

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
           L +Q  E++G+T DS  ++                +   L   GI      +        
Sbjct: 107 LVRQAAEENGVTVDSAEIDSQVETMKS-NYEDEAAWDEALQSVGIQSEEVYRSELELYAM 165

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
              +           E ++    Q              +LF+  D     Q   Q    +
Sbjct: 166 EQALVPIVAGDAEPSEEDLLMYAQMYGPAYDGAKKSSHILFAADDEATAQQVLDQINNGE 225

Query: 205 AEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYV 262
                       +   +++         G   +   +    ++ +      +   +    
Sbjct: 226 I--------DFADAAAQYSIDTASAADGGNVGWDALNSFVTEYTDALSNLEEGQVSGLVT 277

Query: 263 TQKGVEYIAICDKRDLGGE--------IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           +  G+  I   +      E          L+  +    + +  +    E+    +  A I
Sbjct: 278 SDYGIHIIKCTEVFTCPEEVTSIEELPQELQDLIMDYVSSSAQDMAYQEWFSSYQEGADI 337


>gi|120436843|ref|YP_862529.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gramella forsetii
           KT0803]
 gi|117578993|emb|CAL67462.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gramella forsetii
           KT0803]
          Length = 482

 Score = 79.7 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/297 (10%), Positives = 79/297 (26%), Gaps = 15/297 (5%)

Query: 33  YKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ--KINGELEKIAVQELIVETLKKQEI 90
                    I   I   +I D D+      ++ Q        +      L+   L     
Sbjct: 55  GSQRMKVDGIAAVIGEYIILDSDVDLMYKDMQSQGMSTADVTDCNLAGSLMENKLYAHHA 114

Query: 91  EKSGITFDSNTV----NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
            +  I    + +    +      A+  G   +    +  +           L  Q     
Sbjct: 115 IQDSIIIPDSQISATVDQQIQGLAQQAGSMEKVLEFYKKESEAELRDEIFQLTKQRQLAQ 174

Query: 147 VVKNDFMLKYGNLEMEIPANK--QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
            ++   + +      E+         K +   E  +  ++      + + Q  + +    
Sbjct: 175 RMQQKIIEEIEVTPEEVRQYYVGMDEKPMFGTEVELSQIVIEPEIPESEKQKVIDRLNGF 234

Query: 205 AEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYV 262
             +          K   ++    +    G+     +     +F+++     +   + P+ 
Sbjct: 235 KADIEENGASFSTKAVLYSQDPGNASDGGRITLTRKDAFVKEFKDVAFSLQEGEISEPFE 294

Query: 263 TQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA---IIHY 316
           T+ G   I +   R    E  L+  +   +      +     +  LRS      I +
Sbjct: 295 TEFGYHIIQVDKIRGQTVE--LRHIILIPDVTNASVEAARTEIDTLRSKITAGDIEF 349


>gi|313676103|ref|YP_004054099.1| ppic-type peptidyl-prolyl cis-trans isomerase [Marivirga tractuosa
           DSM 4126]
 gi|312942801|gb|ADR21991.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marivirga tractuosa
           DSM 4126]
          Length = 703

 Score = 79.3 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/254 (9%), Positives = 65/254 (25%), Gaps = 7/254 (2%)

Query: 52  TDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
           TD ++       K Q        I+   + +    +          +  T        + 
Sbjct: 227 TDSELKSYYNEHKDQYKTDASRTISYISIELLPSGEDSTMMREEIEELKTEFQKVDDDSA 286

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
              L+++  +S+                         + D +  + +    +     K+ 
Sbjct: 287 FARLNSDRSNSYRTYPIAQLPKILASNTNIIK-----EGDVLGPFIDEGAYVLYKASKIF 341

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
             TV       +L    D+  +     +K  ++  +            + F+        
Sbjct: 342 EDTVSSVKASHILIEAEDDSDEADAQARKEAREVLQKAQSGQDFAELAKDFSDGPSATRG 401

Query: 232 GKAQYLLESDLHPQFQNLLKKSQNN--TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS 289
           G   +  E  +  +F   +              TQ G   I + +++          +  
Sbjct: 402 GDLGWFREGQMVDEFNEAVFAKSGTGVINEVIKTQYGYHIIKVTEEKTAKTYEIATIHRD 461

Query: 290 AQNTPTKIEKHEAE 303
              T T  ++   +
Sbjct: 462 IIPTETTRDRLYRK 475


>gi|308066877|ref|YP_003868482.1| Parvulin-like peptidyl-prolyl isomerase [Paenibacillus polymyxa
           E681]
 gi|305856156|gb|ADM67944.1| Parvulin-like peptidyl-prolyl isomerase [Paenibacillus polymyxa
           E681]
          Length = 372

 Score = 79.3 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/312 (10%), Positives = 87/312 (27%), Gaps = 20/312 (6%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRI----------RTTINGEVITDGDISKRIALLK 64
            + +  +  +  I  + +    A  +++            T  G  IT+ + ++ I+++K
Sbjct: 11  RMLSLGMAALLAISVLAACTKQADENKVKDEPKDNSKVVVTYKGGTITENEFNQEISMMK 70

Query: 65  LQKINGELE---KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
                 E         ++++ + +  + +                 +       S  D  
Sbjct: 71  FLYPEYEAALASDQVREQIVKQEVVYKLLAAKADDKAKEQGAKQGNEQLEQYKKSVGDDK 130

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
                        +Q +         V N    K  + +++    K K +  T     + 
Sbjct: 131 F--KTFLSDKKLTEQGVKDYFTRVMTVINSETNKVTDDQLKQEFEKNKDQFTTATVRHVL 188

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLES 240
                    K + +    K  K+ +             +K++       + G  +    +
Sbjct: 189 INFQDPKTKKQRKKEDALKLAKEVKAKLDGGADFATIAKKYSEDPGSASNGGLYENASVA 248

Query: 241 DLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY---LSAQNTPTK 296
              P F+   +    N    P  T+ G   I +  + +   +         L  +     
Sbjct: 249 QWVPAFKEAAETQPINKIGEPVETEYGYHVIKVESRNEPTFDKLKDNEKSALKNKLAGES 308

Query: 297 IEKHEAEYVKKL 308
           I+      + KL
Sbjct: 309 IQNFTENDLAKL 320


>gi|323529999|ref|YP_004232151.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1001]
 gi|323387001|gb|ADX59091.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1001]
          Length = 308

 Score = 79.3 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/286 (11%), Positives = 68/286 (23%), Gaps = 55/286 (19%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              +NG VIT   +   +    +      L      +LI   L +Q  EK          
Sbjct: 63  VARVNGVVITQAQLDDAVRASNVPDTPA-LRASIKNQLIARELFRQAAEKQ--------- 112

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                                 Q +          +    L  +
Sbjct: 113 --------------------------------HYESRPQVVAAVEQARTVAMTAAYLRDQ 140

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +        ++  +   I   L                  +       +        +++
Sbjct: 141 VKPAPVTDADVKAKYDAIVATLGEFEYKPSAIAVKDADTAQTVLTQLKKGTDFAQLAKQY 200

Query: 223 ASKIHDVSIGKAQYL----------LESDLHPQFQNLLKKSQNNT-TNPYVTQKGVEYIA 271
           +        G   ++           ++   P  + L+K  Q    + P         + 
Sbjct: 201 SQGPGAAQGGALNWISFRTPIQPGNTQNWPQPLAEALVKLPQGGVSSAPVQVGDAFWILR 260

Query: 272 ICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           + +KR   +     +K  L  Q     ++K  A+ V  L  NA I 
Sbjct: 261 VDEKRATQIPQYDQIKDTLRKQLEQVALQKATAQVVVDLMKNAKIQ 306


>gi|237653309|ref|YP_002889623.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thauera sp. MZ1T]
 gi|237624556|gb|ACR01246.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thauera sp. MZ1T]
          Length = 631

 Score = 79.3 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/206 (9%), Positives = 60/206 (29%), Gaps = 11/206 (5%)

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
           A +  +     S++ +          +  A   ++               +  + A    
Sbjct: 200 AADVKVDDAQVSAYYEANPTRFERPARLQAEYLVFDR---AAVERGVEVADDAVRAFYDG 256

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK----DCNKLEKFASK 225
                      +     +  ++   Q  V + + +A     +L           ++ +  
Sbjct: 257 NPQRFGVPEERQARHILLALDQGAEQAEVDRVMAEARALVEQLRADPARFAALAKEKSQD 316

Query: 226 I-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD--LGGE 281
                + G   +     +   F++ +    +     P  +  GV  + + D +   +   
Sbjct: 317 PGSAGNGGDLGFFARGVMVGAFEDAVFSLQKGVIGEPVRSDFGVHIVEVTDIKPSSVKPF 376

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKK 307
            A++A + A+    +  +  AE  ++
Sbjct: 377 EAVRAEILAELRAQEAGRRFAELAEQ 402



 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 53/164 (32%), Gaps = 18/164 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   V    +  +  +    +++ F    + +Y S + S+     + G  I   +  + +
Sbjct: 1   MFEAVRN--NKRVAQVILALLIVPFAFFGMDAYFSDSGSANEAARVGGTTIGAWEFDQAL 58

Query: 61  ALL-------------KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
                           +    + EL +  ++ LI + +      ++ +      +     
Sbjct: 59  REQQDRLRQDGGGQVDRALLQSAELRRAVLENLINQRVLALYAAENRLVVTPQQLQETIA 118

Query: 108 QHAR---NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
             A    N   S + + + L  QG+    F+  LA       +V
Sbjct: 119 GVASFQENGSFSLQRYETLLRAQGMTPATFEARLAQDVRVQQIV 162


>gi|115375700|ref|ZP_01462954.1| foldase protein PrsA [Stigmatella aurantiaca DW4/3-1]
 gi|115367263|gb|EAU66244.1| foldase protein PrsA [Stigmatella aurantiaca DW4/3-1]
          Length = 204

 Score = 79.3 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 20/184 (10%), Positives = 51/184 (27%), Gaps = 12/184 (6%)

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             +   A + I   +  N    +    E E+ A     +        +      +     
Sbjct: 5   ELRAREANRLIIEKLFTNHVYARVAVTEEELRAAYTAHEAEFQEPEQVHAAQLVVKGLDE 64

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLK 251
             +   Q +            K  +   +++        G   +     + P F + +  
Sbjct: 65  ARRVQAQLK---------AGKKFADLARRYSLSADAKVGGDLGFFPRGQMPPVFDEVVFN 115

Query: 252 KSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
                 ++   T+ G     + + +       + ++A + A+    K E+    + K L 
Sbjct: 116 LRPGQVSDVVSTEYGYHLFRVLEFKPARKRDFVEVRAKVEAREVKRKQEEAHEAFEKALL 175

Query: 310 SNAI 313
             A 
Sbjct: 176 DKAK 179


>gi|57505869|ref|ZP_00371794.1| peptidyl-prolyl cis-trans isomerase, putative [Campylobacter
           upsaliensis RM3195]
 gi|57015899|gb|EAL52688.1| peptidyl-prolyl cis-trans isomerase, putative [Campylobacter
           upsaliensis RM3195]
          Length = 273

 Score = 79.3 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/298 (12%), Positives = 91/298 (30%), Gaps = 33/298 (11%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
                  +++  S ++++    T++GE I+D ++++  A +   +   +L +   + LI 
Sbjct: 4   FSLIAAGLIASISLSLNAATVATVDGEKISDTEVNEFYAPMLRGQDFKKLPEAQQKALIQ 63

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           + + +  I K     +      +                                 A   
Sbjct: 64  QYVMQDLILKDAKKQNLEKDPMYIKG---------------------------LERAKDE 96

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           +  +V +N  M        ++    +K K   V+   ++     + + +       + + 
Sbjct: 97  LLLNVYQNKIMQDIKVDATKVKEAYEKNKEQFVKPARVKAKHILVTNEQEAKNIINELKG 156

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-P 260
              +E   +  +      K        + G   +  ES +   F +      +   T  P
Sbjct: 157 LKDKELEKKFTEIART--KSIDTGSAANGGDLGWFDESTMVKPFTDATFSLKKGEITKTP 214

Query: 261 YVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             T  G   I   D R  +       K  +  +    + +K      ++L  NA +  
Sbjct: 215 VKTNFGYHIILKQDSRAKEQVAFKDAKMGIENRFKFEEFQKRIGLKGQELYKNAKVEI 272


>gi|297622327|ref|YP_003703761.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Truepera
           radiovictrix DSM 17093]
 gi|297163507|gb|ADI13218.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Truepera
           radiovictrix DSM 17093]
          Length = 641

 Score = 79.3 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/332 (9%), Positives = 80/332 (24%), Gaps = 33/332 (9%)

Query: 8   SLSDFIKLLTTYFVLIIFCIVPIVSYKSWA-------MSSRIRTTINGEVITDGDISKRI 60
            LS     +  + + I   +  ++++             +     +NG+ I   D+++  
Sbjct: 2   RLSKQTNTVILWLIAIALLVSMVIAFTPGTLFGGAQPQQAEAALLVNGQPIRTVDVARFE 61

Query: 61  ALLKLQKIN-----GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
           A      +       +LE++ + ELI + L +Q   +      +  V           G+
Sbjct: 62  ATPPFNAVQEGPAAEDLEQVLLDELIDQELLRQAASRVN--VSNAEVRARVNAFREEQGV 119

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
           +                +  +      +   + +  ++              +       
Sbjct: 120 AGSANDRAYLDLIGSAGYTDESFRA-LMREQLQRERYLESVAGDLEVTDEEVRAHFEANR 178

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
             Y     + +                 D     L          + +++      G   
Sbjct: 179 DVYQSEPRIVARQLVVTDEGLA-----NDLYARALAGEDFAALAREHSTE-RAEQGGALG 232

Query: 236 ---------YLLESDLHPQFQNLLKKSQN-NTTNPYVTQKGVEYIAICDKRDLG--GEIA 283
                     +    L     +     Q    T P         +++             
Sbjct: 233 AAEGESDPRPVTRVALPTAVADAAFALQGTGLTEPIEAAGAFYIVSVEAYEPPQPRPFEE 292

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           ++  +       K    +   ++ LR  A I 
Sbjct: 293 VQEQVREDALAAKETGAQEAALRTLREEATIE 324


>gi|307826208|ref|ZP_07656418.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacter
           tundripaludum SV96]
 gi|307732742|gb|EFO03609.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacter
           tundripaludum SV96]
          Length = 343

 Score = 79.3 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/322 (11%), Positives = 81/322 (25%), Gaps = 64/322 (19%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRI-----------------RTTINGEVITDGDISK 58
           +   F+ ++     +++  +   ++ +                    +NG+ I    +  
Sbjct: 1   MKKKFIPLLVVGTALIAGCNQEKATNVGSAPAATATPAVDKADAVAVVNGQYIAKSTLET 60

Query: 59  RIALLKLQKINGEL-EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
               +  +       ++  V+ELI   L  Q+  +  +      V               
Sbjct: 61  LEKEIAERSHGQTFPKEKLVEELIQRELLVQDATQKQLDKSPELVAQL------------ 108

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
                             +      +    ++N                  K+      E
Sbjct: 109 ------------------EAAKKALLTQADLQNFIKANPVTDAEIKAEYDSKVAAEKGTE 150

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD-VSIGKAQY 236
           Y  R +L        +    + K                    K +    +  + G   +
Sbjct: 151 YKARHILVKTETEAKKLITELDK-----------GADFAKLANKNSLDAKESQNGGDLGW 199

Query: 237 LLESDLHPQF-QNLLKKSQNNTT-NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP 294
              + +   F + +    +   T  P  TQ G   I   D R +         +  Q TP
Sbjct: 200 FSAAQMVAPFSEAVAALEKGKYTKEPVKTQFGFHVILKEDSRPVTP--PPLEAVKEQLTP 257

Query: 295 TKIEKHEAEYVKKLRSNAIIHY 316
               K   E ++ LR  A +  
Sbjct: 258 FLQRKKVQEMIETLRKQAKVEI 279


>gi|300691410|ref|YP_003752405.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Ralstonia
           solanacearum PSI07]
 gi|299078470|emb|CBJ51122.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Ralstonia
           solanacearum PSI07]
          Length = 637

 Score = 79.3 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/407 (10%), Positives = 96/407 (23%), Gaps = 106/407 (26%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI------------ 60
           + L+    V   F    +  Y  +   S     +   VIT  ++  R+            
Sbjct: 1   MFLVLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDTVITTSELDTRVREQTERLRQMLG 60

Query: 61  -ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ-------HARN 112
                 Q    ++ +  +  +I + +   E  +  ++   + V     Q          +
Sbjct: 61  AQYDPRQFEGSQMRRDVLDGIIQQRVMVNEASRVNLSVADSKVRETIEQIPAVAQLRKPD 120

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK----------------------- 149
                + +   L  QG+    F   L  + +   + +                       
Sbjct: 121 GKFDTDAYIKLLAAQGMTPEQFDARLRSELVLQQIPQSIVSTAFVPKSLVDRLIEARDQQ 180

Query: 150 ----------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG--- 196
                      D+  K    +  I A     +        ++          +  Q    
Sbjct: 181 REVQALLLKPADYAGKVAVDDKAIQAYYDAHQQEFAVPEQVKAEYVVFSGEDMMKQIPVT 240

Query: 197 -FVQKRIKDAEESRLRLPKDCNKL------------------------------------ 219
               K   D   +R +  +                                         
Sbjct: 241 PEQLKEYYDQNAARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEEVLAEVRKTPGNF 300

Query: 220 EKFASKIHDVSI-----GKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAI 272
            + A K           G+  +L +    P F+N L   K   + ++   +  G   I +
Sbjct: 301 AELAKKYSGDPGSAAQGGELGFLAKGATVPPFENALFALKQPGDISDVVESDFGFHIIKL 360

Query: 273 CDKRD------LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            + +          +  L+  +  Q    K  +    +   +   + 
Sbjct: 361 EEVKGGGVQSLEAVKPELEREVRTQLANKKYTELADAFSNGVEDQSD 407


>gi|187928546|ref|YP_001899033.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
           12J]
 gi|187725436|gb|ACD26601.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
           12J]
          Length = 265

 Score = 79.3 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 65/280 (23%), Gaps = 48/280 (17%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              +NG+ I    +   I     Q  + EL   A   L+   L +Q+  K G+    +  
Sbjct: 27  AAVVNGKAIPSAKVDALIKK-SGQPESPELRARARDMLVDRELIEQDAAKRGLLERDDIQ 85

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                                       +V  +F     N    
Sbjct: 86  EQLAAARL----------------------------------NVLVAAEFEDYVKNSPAT 111

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                ++   I  +    +           +                    K  +  +  
Sbjct: 112 EDELHKQYDKIKAQFGNGKEYHAHHILVDKEADAKA------IIAKLKAGAKFEDIAKAQ 165

Query: 223 ASK-IHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDKRDL- 278
           +       + G   +       P+F   L    +   T  P  TQ G   I + D RD  
Sbjct: 166 SKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGQITQTPVKTQFGWHVIRLDDTRDAK 225

Query: 279 -GGEIALKAYLSAQNTPTK--IEKHEAEYVKKLRSNAIIH 315
                 +K  L       +          +K LR  A I 
Sbjct: 226 IPSYEEVKPQLLEMMMGDQNWQRSKFQAMLKDLREKAKIQ 265


>gi|146299709|ref|YP_001194300.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacterium
           johnsoniae UW101]
 gi|146154127|gb|ABQ04981.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacterium
           johnsoniae UW101]
          Length = 475

 Score = 79.3 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/335 (12%), Positives = 97/335 (28%), Gaps = 26/335 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYK-------------SWAMSSRIRTTIN 47
           +  K+     D+  +LT  F+L    IV                          I  T+ 
Sbjct: 2   LLKKLQLKTIDYKLVLTMCFLLFFTSIVSAQEIIKDVVAEKPAEPVHGKQKIDGIIATVG 61

Query: 48  GEVITDGDISKRIALLKLQ--KINGELEKIAVQELIVETLKKQEIEKSGITFDSN----T 101
             ++ D DI K    +  Q   I        + +L+ + L   +  +  I          
Sbjct: 62  DYIVLDSDIDKGYLEISSQGGNIKDITRCQMLGKLLEDKLYAHQAIQDSIIVSDAEVRGM 121

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
           +        +  G   +    +          +   +  +      +++  +        
Sbjct: 122 MEERLNYMIQQVGDINKVVEYYKKSSVEEFKTYFADILKEQKLASEMRDKIVKDVEITPE 181

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           E+    +K+    +  +     +  I      ++   QK I      R  + +  +   K
Sbjct: 182 EVRNFFRKIPKDELPTFGAEMEVAQIVVEPKVSKEDKQKVIDRLNAIRKDVLEGSSFATK 241

Query: 222 ---FASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR 276
              ++       + G  +   ++    +F+++     +   + P+ T  G   I +   +
Sbjct: 242 AVLYSQDPGSAPNGGYYKMTRKTPFVKEFKDVAFSLQEGEISAPFETTFGYHIIMVDKIK 301

Query: 277 DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
               E  L+  L A        K   E +  +R+ 
Sbjct: 302 GQEVE--LRHILIAPTVSESALKEAKERIANIRAK 334


>gi|68304918|gb|AAY89929.1| predicted survival protein surA [uncultured bacterium BAC13K9BAC]
          Length = 441

 Score = 79.3 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/257 (10%), Positives = 79/257 (30%), Gaps = 6/257 (2%)

Query: 63  LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
           ++      +  KI    + V     ++          + +      +      +      
Sbjct: 186 IQSYLKTNDSLKIINNIMTVREYLIEDENNKLDITKVDILVRNIKTNGLEDTYNRYPNIK 245

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
                       K     Q+    + +N +   +   +  +          +      + 
Sbjct: 246 IKINNLSEIPFTKLPDIYQNNLNILDQNSYTDLFKTGKGYVFLEVVSSSMYSEEY---KV 302

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESD 241
               +  N ++N   +++R    +    +     +  +K++  K   +  G   ++ +  
Sbjct: 303 SHILLKTNPMENLKSLKERFYKIKRDATKENNFSDYAQKYSLDKASAIKGGSLGWINKKL 362

Query: 242 LHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR-DLGGEIALKAYLSAQNTPTKIEK 299
           + P+F + +        + P+ TQ G   + + DKR         +  + A     K++ 
Sbjct: 363 VVPEFGRIMSNMKIGGISEPFKTQFGWHILQLEDKRIKNISNDVARNQVVAILKERKVKV 422

Query: 300 HEAEYVKKLRSNAIIHY 316
            + E++ KL+  A I  
Sbjct: 423 AKREWLAKLKDQAYIEI 439



 Score = 72.8 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 121/317 (38%), Gaps = 14/317 (4%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
             KV+  +   + +    F++I+F +   +S  + AM  +I   +N  V+   +++ ++ 
Sbjct: 23  LEKVYQVIKTGLNMNNVKFLIILFFLT--ISNMAHAMEDKIIAVVNDNVVLKSELNNKLT 80

Query: 62  LLKL----QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
            + L    +    +L++  + +LI E+L +Q   + GI      +       A++  L+ 
Sbjct: 81  TINLEGTSRLEAAKLKREILDQLIEESLLEQAANRLGIYISDIDLQNRIKLIAQDKNLTV 140

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
                 ++ Q I    + + L  +    ++ +  F  +    E EI +  +   ++    
Sbjct: 141 LQLKEAVESQNIDYLRYLKNLRKRIQIEELFRIQFTSRAYVSEEEIQSYLKTNDSLK--- 197

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
            +I  ++             +     D     ++     +   ++ +    ++      +
Sbjct: 198 -IINNIMTVREYLIEDENNKLDITKVDILVRNIKTNGLEDTYNRYPNIKIKIN--NLSEI 254

Query: 238 LESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK 296
             + L   +QN      QN+ T+ + T KG  ++ +     +  E    +++  +  P +
Sbjct: 255 PFTKLPDIYQNNLNILDQNSYTDLFKTGKGYVFLEVVSS-SMYSEEYKVSHILLKTNPME 313

Query: 297 IEKHEAEYVKKLRSNAI 313
             K   E   K++ +A 
Sbjct: 314 NLKSLKERFYKIKRDAT 330


>gi|299531702|ref|ZP_07045107.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni S44]
 gi|298720418|gb|EFI61370.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni S44]
          Length = 632

 Score = 79.3 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/405 (10%), Positives = 100/405 (24%), Gaps = 102/405 (25%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK-- 58
           M   +    S F+ +L    ++  F  V + +   +  SS+    ++G  IT  D     
Sbjct: 1   MFESIR-KHSKFVMILLFLLIIPSFIFVGV-NQNYFTESSQTVARVDGHDITQQDWDNAH 58

Query: 59  --RIALLKLQKI--------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
                 L+ Q          + E     +++L+ + +      K  +T     +     +
Sbjct: 59  RAESDRLRAQNPTMDAKLLDSPEARYATLEKLVRDRVLAAAAAKMHLTTPDAQLVRTLRE 118

Query: 109 -------HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---------- 151
                     +  L AE + + +  QG+    F+  L  +     V+ +           
Sbjct: 119 IPAIASLQKPDGSLDAEAYKALVGSQGMTPEGFEANLRRELALNQVLGSVSSTSFTTAAQ 178

Query: 152 -----------------------FMLKYGNLEMEIPANKQKMKNITVR------------ 176
                                  F  K    E E+ A  +   N   +            
Sbjct: 179 LQQAMDALYQRREIQVARFDASAFAGKVQPTEAELKAFYEAHTNQFKQPEAATVEYVQLD 238

Query: 177 -----------------EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK- 218
                             Y       + P+ +  +   +          R +      + 
Sbjct: 239 LAAVQQGIVLSEDDLRTYYKENAARLAGPEERRASHILINAARDLPAAEREKAKAKAEQL 298

Query: 219 ----------LEKFASKIH-----DVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYV 262
                       + A           + G   Y     +   F+  + K  Q + ++   
Sbjct: 299 LAQVRKDPKSFAQVAKANSQDPGSAANGGDLGYFGREAMVKPFEEAVFKMKQGDISDVVE 358

Query: 263 TQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
           +  G   I +   +           +  +      ++       +
Sbjct: 359 SDFGFHIIELTGIKQPKV--PSFEEMRPKLEADLKQQQAQRKFAE 401


>gi|49185187|ref|YP_028439.1| peptidylprolyl isomerase [Bacillus anthracis str. Sterne]
 gi|49479990|ref|YP_036442.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|165870489|ref|ZP_02215143.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0488]
 gi|167633046|ref|ZP_02391372.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0442]
 gi|167639670|ref|ZP_02397940.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0193]
 gi|170687085|ref|ZP_02878304.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0465]
 gi|170706725|ref|ZP_02897184.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0389]
 gi|177649682|ref|ZP_02932684.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0174]
 gi|190565511|ref|ZP_03018431.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis Tsiankovskii-I]
 gi|196040038|ref|ZP_03107341.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus NVH0597-99]
 gi|218903473|ref|YP_002451307.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus AH820]
 gi|227814851|ref|YP_002814860.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. CDC 684]
 gi|229604551|ref|YP_002866676.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0248]
 gi|254684916|ref|ZP_05148776.1| peptidylprolyl isomerase [Bacillus anthracis str. CNEVA-9066]
 gi|254722324|ref|ZP_05184112.1| peptidylprolyl isomerase [Bacillus anthracis str. A1055]
 gi|254737363|ref|ZP_05195067.1| peptidylprolyl isomerase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254743452|ref|ZP_05201137.1| peptidylprolyl isomerase [Bacillus anthracis str. Kruger B]
 gi|254751679|ref|ZP_05203716.1| peptidylprolyl isomerase [Bacillus anthracis str. Vollum]
 gi|254760198|ref|ZP_05212222.1| peptidylprolyl isomerase [Bacillus anthracis str. Australia 94]
 gi|301053856|ref|YP_003792067.1| peptidylprolyl isomerase [Bacillus anthracis CI]
 gi|46396831|sp|Q81QT1|PRSA3_BACAN RecName: Full=Foldase protein prsA 3; Flags: Precursor
 gi|49179114|gb|AAT54490.1| protein export protein prsA [Bacillus anthracis str. Sterne]
 gi|49331546|gb|AAT62192.1| protein export protein prsA [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|164713644|gb|EDR19167.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0488]
 gi|167512379|gb|EDR87755.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0193]
 gi|167531858|gb|EDR94523.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0442]
 gi|170128456|gb|EDS97324.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0389]
 gi|170669136|gb|EDT19880.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0465]
 gi|172084756|gb|EDT69814.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0174]
 gi|190563538|gb|EDV17503.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis Tsiankovskii-I]
 gi|196029297|gb|EDX67901.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus NVH0597-99]
 gi|218538215|gb|ACK90613.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus AH820]
 gi|227007172|gb|ACP16915.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. CDC 684]
 gi|229268959|gb|ACQ50596.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0248]
 gi|300376025|gb|ADK04929.1| peptidylprolyl isomerase [Bacillus cereus biovar anthracis str. CI]
          Length = 283

 Score = 79.3 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/308 (9%), Positives = 84/308 (27%), Gaps = 48/308 (15%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKINGELE 73
           +      L       +++  +   S  + T  +    IT+ ++SK +          +  
Sbjct: 1   MKKKKLFLGTIISCVVLALSACGSSDNVVTSKVGN--ITEKELSKELR--------QKYG 50

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           +  + ++++      + + S                     +     S+        ++ 
Sbjct: 51  ESTLYQMVLSKALLDKYKVSDEEAKKQVEE-------AKDKMGDNFKSTLEQVGLKNEDE 103

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
            K+ +  +  +   +K     K      +       +                       
Sbjct: 104 LKEKMKPEIAFEKAIKATVTEKDVKDNYKPEMKVSHILVKD------------------- 144

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK 252
                +K  K+ +E            ++++         G+           +F+    K
Sbjct: 145 -----EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYK 199

Query: 253 -SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY----VKK 307
                 + P  T  G   I + DK++L     +K  +       +++    ++    V +
Sbjct: 200 LDAGQVSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNE 259

Query: 308 LRSNAIIH 315
           L  +A I 
Sbjct: 260 LLKDADIK 267


>gi|260219734|emb|CBA26579.1| hypothetical protein Csp_E36670 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 587

 Score = 79.3 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/403 (10%), Positives = 97/403 (24%), Gaps = 101/403 (25%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDIS--- 57
           M   V       + L+    ++  F +V +  YKS A       T+    IT  +     
Sbjct: 1   MFDFVRKHTKVLMFLMFL-LIIPAFVLVGVDGYKSMAGGGATVATVGNAKITQEEWDFAH 59

Query: 58  -KRIALLKLQKIN--------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
              +  L+    N         E     ++ L+ E +  + ++ + +T  +  +     Q
Sbjct: 60  KNEVDRLRASVPNLDPKLLDSAEARYTTLERLVREKVMAEAVQTAHMTTSNARLARELQQ 119

Query: 109 H-------ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
           +         +  L  E +      QG+    F+  +        V              
Sbjct: 120 NPTIASLRKPDGTLDMERYRQLAASQGLTPEGFEARVRRDLSLMQVESAVTGTAFSPKAL 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV----- 183
                                 D+  K    + +I A  Q    +               
Sbjct: 180 SDLALNAFFERREVQVLRFSPADYASKINPSDADIDAYFQANSALFQSTETANVEYVVLD 239

Query: 184 -----------------LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
                             F    ++L  +   +         +     D  K ++ A+ +
Sbjct: 240 LEAVKKTVSVNEADLKSYFEQNASRLSAKEERRASHILINAPKDMPAADRAKAKERATAL 299

Query: 227 -----------------------HDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYV 262
                                       G   +     +   F++      +   ++   
Sbjct: 300 LAQVRKAPDSFAEVAKKNSQDVGSAPRGGDLDFFGRGAMVKPFEDAAFSMKKGEISDLVE 359

Query: 263 TQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAE 303
           +  G   I + D +          +  L  +      ++  AE
Sbjct: 360 SDFGFHIIKLADVKGAKQPTFEEARVSLEPELRAQSAQRKFAE 402


>gi|291287880|ref|YP_003504696.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885040|gb|ADD68740.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 633

 Score = 79.3 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/287 (11%), Positives = 84/287 (29%), Gaps = 24/287 (8%)

Query: 52  TDGDISKR--IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
           TDG   ++  + LL   ++  ++ + +++  I     +  I +S    D      F  Q+
Sbjct: 126 TDGQFDQQLYVQLLSRNRLTPQIFESSIRRDITLKKIEDLIRQSVAVSDQEVEQEFIYQN 185

Query: 110 ------------ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                           G      ++           ++        +       +  ++ 
Sbjct: 186 TVATIRYLELGADNFIGNVEITDNALTAFFDEHKEQYRVPEKADFKYVTFDPETYKGEFI 245

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSI---PDNKLQNQGFVQKRIKDAEESRLRLPK 214
             + EI     + K        +R           +  +    + ++ K   +  +    
Sbjct: 246 TSDKEIENYFIQNKASFNEPERVRAAHILFRVENWDDEKAATEIYQKAKKVRKEIVDGAD 305

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAIC 273
                EK++      + G+  +     + P+F+N     +    ++   TQ G   I + 
Sbjct: 306 FAKMAEKYSEDSTAQNGGELGFFTRGQMVPEFENAAFTTNPGEVSDVVKTQFGFHIINVE 365

Query: 274 DKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYV----KKLRSNAII 314
           +           +K  ++A     K       +V    K +   + I
Sbjct: 366 EYIPSTDPTLDEVKDEIAALIKDQKSASSFRTHVYDTYKAILDKSNI 412



 Score = 43.5 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 36/326 (11%), Positives = 83/326 (25%), Gaps = 37/326 (11%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRI-----RTTINGEVITDGDISKR 59
           + +SL +  KL+T     +I   V  + +  W +  ++        ++G  ITD +   +
Sbjct: 1   MISSLRNKKKLITFSLWFVIAAFVGTI-FFVWGVGDKVQSQLYAAKVDGVTITDQEFRDK 59

Query: 60  IALLKLQKIN------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
           +   + Q                 LEK  ++ LI ETL + E  +  I      V     
Sbjct: 60  VENTRNQFRQLFGNNIDEILKGDTLEKTVMETLITETLLRNEANRLNIPASDAEVAANIQ 119

Query: 108 QHARNT--GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
                   G   +     L  +        +    + I    +++         + E+  
Sbjct: 120 SVQAFQTDGQFDQQLYVQLLSRNRLTPQIFESSIRRDITLKKIEDLIRQSVAVSDQEVEQ 179

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
                  +    Y     L +                   E        +    +     
Sbjct: 180 EFIYQNTVATIRY---LELGADNFIGNVEITDNALTAFFDEHKEQYRVPEKADFKYVTFD 236

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAIC---DKRDLGGEI 282
                              + +N   +++ +   P   +       +    D++      
Sbjct: 237 PETYKGEFI------TSDKEIENYFIQNKASFNEPERVRAAHILFRVENWDDEKAATEIY 290

Query: 283 ALKAYLSAQN-----TPTKIEKHEAE 303
                +  +           EK+  +
Sbjct: 291 QKAKKVRKEIVDGADFAKMAEKYSED 316



 Score = 39.7 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 4/81 (4%)

Query: 240 SDLHPQFQNLLKKSQNNTTNPYVT-QKGVEYIAICDKRD---LGGEIALKAYLSAQNTPT 295
                   ++ K    +      T    V  + + D         +   K  + +     
Sbjct: 544 GMNARLMGDIFKAEPGDFIKDVYTVGSNVYIVQVKDIIKPDIATMDDQTKEQIKSSLFGV 603

Query: 296 KIEKHEAEYVKKLRSNAIIHY 316
           K  +    YV+ L++NA I  
Sbjct: 604 KSNQAVQSYVENLKANAKIEI 624


>gi|315500239|ref|YP_004089042.1| ppic-type peptidyl-prolyl cis-trans isomerase [Asticcacaulis
           excentricus CB 48]
 gi|315418251|gb|ADU14891.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Asticcacaulis
           excentricus CB 48]
          Length = 332

 Score = 79.3 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/320 (9%), Positives = 70/320 (21%), Gaps = 54/320 (16%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYK-----SWAMSSRIRTTINGEVITDGDISKRIALL 63
           +  + KL     + ++   +                      I+G  I   D+       
Sbjct: 1   MQRWTKLRQVAVLALVTLTIAGCDKPTLDERPPEPGDVAVARIDGHTIWASDVRYEAVQQ 60

Query: 64  KLQKINGE------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
            L            L +  ++E+I + L  Q   K GI                      
Sbjct: 61  GLIGDGEPFDLASPLFRRTLEEVIDQKLLAQAALKKGIDRTELAQRRI------------ 108

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
                                    +   +++        + +++   ++Q        E
Sbjct: 109 ------------------AAAREDILGHMLLEQSVDASIDDKKVKDLYDEQVKLAQKSEE 150

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
              R +L             +Q               +   +E+   +    + G   Y 
Sbjct: 151 IRARLILVKTRPEADNVMRQLQ----------GGSLFEAMAMERSIDQATRFNGGDMGYF 200

Query: 238 LESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK 296
               +   ++   +         P     G     + ++R                    
Sbjct: 201 TTDVIPESYRAALMTAKPGQIAGPVQIDGGWAVFKVEERRPEQPMTI--EEARPGIVSAL 258

Query: 297 IEKHEAEYVKKLRSNAIIHY 316
             +     +  LR  A + +
Sbjct: 259 KLEQVRGLLGGLRDGARVEF 278


>gi|91788447|ref|YP_549399.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp.
           JS666]
 gi|91697672|gb|ABE44501.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp.
           JS666]
          Length = 261

 Score = 79.3 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 41/305 (13%), Positives = 85/305 (27%), Gaps = 49/305 (16%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--GELE 73
           +   F+L       +      A +      +NG+ +    +      +         ++E
Sbjct: 1   MKKQFLLATAVAGLLAMGAQGAFAQN-VAIVNGKAVPKARLDSLAQQIARSGRPVTPDME 59

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
               +E+I   +  QE EK G++   +                                 
Sbjct: 60  NQLREEVIAREVFMQEAEKQGLSGTDDFKVQ----------------------------- 90

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
             +      +  ++  +                 +       +EY  R +L         
Sbjct: 91  -MELARQTILIRELFADYQKKNPVTDADLKGEYDKFAAANGGKEYKARHIL--------- 140

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLK 251
                +   K    S  +  K  +  +K +         G   +   S   P+F + LLK
Sbjct: 141 --VEKEAEAKAIIASLKKGGKFEDIAKKQSKDPGSGAKGGDLDWANPSGYVPEFSEALLK 198

Query: 252 KSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
            ++   T+ P  +Q G   I + D R+          +  Q      ++  A + + LR 
Sbjct: 199 LNKGQLTDAPVKSQFGYHVIRVDDIRNAQL--PSFEEVKPQIAQQMQQQKLATFQEDLRK 256

Query: 311 NAIIH 315
            A I 
Sbjct: 257 KAKIE 261


>gi|121604733|ref|YP_982062.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas
           naphthalenivorans CJ2]
 gi|120593702|gb|ABM37141.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas
           naphthalenivorans CJ2]
          Length = 263

 Score = 79.3 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 41/306 (13%), Positives = 85/306 (27%), Gaps = 49/306 (16%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--GEL 72
           ++   F+L       +      A++      +NG+ +    +      +         E+
Sbjct: 2   IMKKQFLLATAMASLLALGAQGAIAQN-VAIVNGKAVPKTRLDALAQQVAKAGRPVTPEM 60

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           E    +E+I   +  QE EK GI    +                                
Sbjct: 61  EGQLREEVIAREVFMQEAEKQGIAASDDFKAQ---------------------------- 92

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
              +      +  ++  +                 +       +EY  R +L        
Sbjct: 93  --MELARQTLMIRELFASYQKKNPVTDADLKAEYDKFAAASGGKEYKARHIL-------- 142

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLL 250
                 +        S  +  K  +  +K +         G   +   S   P+F + LL
Sbjct: 143 ---VEKESEATAIIASLKKGGKFEDIAKKQSKDPGSGAKGGDLDWANPSSYVPEFTEALL 199

Query: 251 KKSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
           K ++   T+ P  +Q G   I + D R           +  Q      ++  A + ++LR
Sbjct: 200 KLNKGQMTDTPVKSQFGYHVIRVDDIRSAKL--PAFEEVKPQIAQQMQQQKLAAFQEELR 257

Query: 310 SNAIIH 315
             A + 
Sbjct: 258 KKAKVE 263


>gi|119945205|ref|YP_942885.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas
           ingrahamii 37]
 gi|119863809|gb|ABM03286.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas
           ingrahamii 37]
          Length = 631

 Score = 79.3 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 50/406 (12%), Positives = 101/406 (24%), Gaps = 94/406 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+          +    +++ F +  + SY   +  S +  T+N E I+   + +  
Sbjct: 1   MLDKMREGAQGATAKIIIVVIILSFALAGVSSYLGGSGIS-VAVTVNDEEISKATVDQAY 59

Query: 61  ALLKLQ----------------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                  N ++ + A+Q +I E L  Q I+  G+      V  
Sbjct: 60  QNERTRLEQQYGEQFALLASTPNFNQKIRQQAMQTVISERLLTQAIKDMGLRIGDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
              +          + E + S L +       F Q +        ++             
Sbjct: 120 EIRKMKEFQVDGNFNNEQYLSLLRRASYTPAQFSQSIKQDLARRQLLTMVLGSEFILPME 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRT------ 182
                                +DF  K    E EI    +           +        
Sbjct: 180 VQQANRLQAQKRVARVLTVKASDFADKDPISEQEISTYYENNSQFFQTAEQVSVDYVVLD 239

Query: 183 -------------VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL---------- 219
                         L    D    +    +KR                K           
Sbjct: 240 GSLLADRVTLSSEELEKYYDMHASDYQRGEKRKVAHILLLGDNSAAKEKAQAILSELEEG 299

Query: 220 --------EKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN--TTNPYVTQKGVEY 269
                   +K        + G+  +     + P F +   K       +N   +Q G   
Sbjct: 300 ADFAQLAAQKSEDSYSAENNGELDWFERGVMDPAFDDAAFKLTKEAPLSNIVKSQFGYHI 359

Query: 270 IAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           I + D ++        + A +       ++     E  ++L   A 
Sbjct: 360 IKLVDIQESKKLPLSEVTAQVENAAKREEMNNLYYELHQRLSEAAF 405


>gi|237803592|ref|ZP_04591177.1| periplasmic folding chaperone [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331025574|gb|EGI05630.1| periplasmic folding chaperone [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 627

 Score = 79.3 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 64/194 (32%), Gaps = 6/194 (3%)

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                     F     +   + ++ K+ F  K    + ++ A  QK       +     +
Sbjct: 215 KAHYDQHAKEFMSPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIANLSEQRRAAHI 274

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL 242
           L     N   N    + +I++ ++   +        ++F+         G   Y  +   
Sbjct: 275 LI--EVNDKLNDEQAKAKIEEIQQRLAKGEDFAALAKEFSQDPGSSSKGGDLGYAGKGVY 332

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEK 299
            P F+  L   +++  + P  T  G   I +       +    +LK  L+ +     +E+
Sbjct: 333 DPAFEEALYALNKDQVSQPVRTDFGWHLIKLLGVEAPSVPTFASLKGKLTDELKSQLVEQ 392

Query: 300 HEAEYVKKLRSNAI 313
              E  K+L  +A 
Sbjct: 393 KFVEVTKQLEDSAF 406



 Score = 62.8 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/326 (8%), Positives = 81/326 (24%), Gaps = 32/326 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++ +     I +  +   + +    +NGE I+  ++S+ +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIVALMAFTGIEAMFTATSNKQNAAEVNGEDISQNELSQAV 60

Query: 61  ALLK-----------------LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            + +                        L + A++ LI   L  Q    +  TF    ++
Sbjct: 61  DMQRRQLAQQLSQQLGKDFDPALLDEKLLRESALKGLIDRKLLLQGASDAKFTFTDAALD 120

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE-ME 162
              +Q              F            Q+   Q +  +++             + 
Sbjct: 121 QQILQTPEFQVDGKFSADRFDQVIRQLGYSRMQF--RQMLGQEMLIGQVRAGVAGSAFVT 178

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
               +   +            L +           V+       +  +   +      + 
Sbjct: 179 DAQVEAFARLEKQTRDFASLTLPADTSAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIEL 238

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY-IAICDKRDLGGE 281
                        +  +  +  +      +      N    ++     I + DK +    
Sbjct: 239 KKSS---------FFDKVQVKDEDLQAAYQK--EIANLSEQRRAAHILIEVNDKLNDEQA 287

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKK 307
            A    +  +    +     A+   +
Sbjct: 288 KAKIEEIQQRLAKGEDFAALAKEFSQ 313


>gi|195936005|ref|ZP_03081387.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           O157:H7 str. EC4024]
          Length = 608

 Score = 79.3 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 42/381 (11%), Positives = 99/381 (25%), Gaps = 85/381 (22%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING----- 70
           +    +++ F +  +  Y     ++     +N + I+ G         + +         
Sbjct: 1   MIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAFNSERNRMQQQLGDQY 59

Query: 71  -----------ELEKIAVQELIVETLKKQEIEK-----------------SGITFDSNTV 102
                       L +  +  LI E L  Q   +                      D    
Sbjct: 60  SELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQAIFATPAFQVDGKFD 119

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDN--------HFKQYLAIQSIWPDVVKNDFML 154
           N  +       G++A+ ++  L  Q              F        +   V +   + 
Sbjct: 120 NSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVAQQRVVR 179

Query: 155 KYGNL-----------EMEIPANKQKMKNITVRE-------------------------- 177
           +               E EI +  ++ KN  +                            
Sbjct: 180 EATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLDAATMQQPVSDADLQS 239

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE----KFASKIHDVSIGK 233
           Y  +         + +      K   +A+     L K  +       K A  I   + G 
Sbjct: 240 YYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIISARNGGD 299

Query: 234 AQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQ 291
             +L ++ +  + +N   K +   +    +  G   + + D +    +    ++  ++A+
Sbjct: 300 MGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAKVKSLDEVRDDVAAK 359

Query: 292 NTPTKIEKHEAEYVKKLRSNA 312
               K         +K+   A
Sbjct: 360 VKHEKALDAYYALQQKVSDAA 380


>gi|330952802|gb|EGH53062.1| periplasmic folding chaperone [Pseudomonas syringae Cit 7]
          Length = 627

 Score = 79.3 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 64/194 (32%), Gaps = 6/194 (3%)

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                     F     +   + ++ K+ F  K    + ++ A  QK       +     +
Sbjct: 215 KAHYDEHAKEFMSPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIANLSEQRRAAHI 274

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL 242
           L     N   N    + +I++ ++   +        ++++         G   Y  +   
Sbjct: 275 LI--EVNDKLNDEQAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSNKGGDLGYAGKGVY 332

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEK 299
            P F+  L   +++  + P  T  G   I +       +    +LK+ L+       +E+
Sbjct: 333 DPAFEEALYALNKDQVSQPVRTDFGWHLIKLLGVEAPSVPTFASLKSKLTNDLKSQLVEQ 392

Query: 300 HEAEYVKKLRSNAI 313
              E  K+L  +A 
Sbjct: 393 KFVEVTKQLEDSAF 406



 Score = 63.2 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/327 (8%), Positives = 81/327 (24%), Gaps = 33/327 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++ +     I +  +   + +    +NGE I+  ++S+ +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIIALMAFTGIEAMFTATSNKQNAAEVNGEDISQNELSQAV 60

Query: 61  ALLK-----------------LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            + +                        L + A++ LI   L  Q    +  +F    ++
Sbjct: 61  DMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADAKFSFSDAALD 120

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE-ME 162
              +Q              F            Q+   Q +  +++             + 
Sbjct: 121 QQLLQTPEFQVDGKFSADRFDQVIRQLGYSRLQF--RQMLGQEMLIGQVRAGVAGSAFVT 178

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
               +   +            L +           V+    +  +  +   +      + 
Sbjct: 179 DAQVEAFARLEKQTRDFASLTLPADTSAVKVTDDEVKAHYDEHAKEFMSPEQVVLDYIEL 238

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY-IAICDKRDLGGE 281
                        +  +  +  +      +      N    ++     I + DK +    
Sbjct: 239 KKSS---------FFDKVQVKDEDLQAAYQK--EIANLSEQRRAAHILIEVNDKLNDEQA 287

Query: 282 IALKAYLSAQNTP-TKIEKHEAEYVKK 307
            A    +  +            EY + 
Sbjct: 288 KAKIEEIQQRLAKGEDFAALAKEYSQD 314



 Score = 37.0 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 28/254 (11%), Positives = 68/254 (26%), Gaps = 9/254 (3%)

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             +L      +L+ +   +     +    DS   +    Q A++ GL  +  + F  + G
Sbjct: 378 KSKLTNDLKSQLVEQKFVEV----TKQLEDSAFESSDLSQPAQDLGLKVQTTAPFGREGG 433

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
            G    +  +        + +             +   + K      +  L         
Sbjct: 434 EGLTANRAVIQAAFSPEVLEEGANSNTLELDPETVVVVRSKEHLQPQQLPLESVASSIRA 493

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS--IGKAQYLLESDLHPQF 246
               ++     K   +A  + LR  K     ++       +       + +    L   F
Sbjct: 494 QLVKEHASAAAKAKGEALLAGLREGKIPLAAKQDGRDWKMMEAVTRSQEGVDPQVLQTLF 553

Query: 247 QNLLKKSQN--NTTNPYVTQKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEKHEAE 303
           +      ++     +   +      + +             KA         + ++  A 
Sbjct: 554 RMPKPTGKDKPEFASITASDGSFVIVRLNGVNQAAAPTDAEKAQYRRFLASREGQQDFAA 613

Query: 304 YVKKLRSNAIIHYY 317
           Y  +L S A I  +
Sbjct: 614 YRAQLESKAKIEKF 627


>gi|313679080|ref|YP_004056819.1| ppic-type peptidyl-prolyl cis-trans isomerase [Oceanithermus
           profundus DSM 14977]
 gi|313151795|gb|ADR35646.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oceanithermus
           profundus DSM 14977]
          Length = 621

 Score = 79.3 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/327 (9%), Positives = 90/327 (27%), Gaps = 32/327 (9%)

Query: 8   SLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL-- 65
           +++    +L   F +    +       +     R    +NG+ I + ++ ++     L  
Sbjct: 7   AITIIFGILAAAFAIGTIFLFT--PQGNPQQEGRPILYVNGQPINELELMRKAQTNPLFT 64

Query: 66  QKINGELEKIA----VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
               G L  +     ++++I     +Q+  +      S+ V     Q     G++  +  
Sbjct: 65  LNPTGVLRPLIDTYFLEQVITLEALRQDAARIR--VSSSEVKQQVDQLRERLGVTDREGY 122

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
               +     +   +      +      ++   K    + E     +  K     E  ++
Sbjct: 123 DRFLQSIGYTDSQLRDEIRTQLRIQKRIDELRKKVKLTDEEARFYYELHKGEYAAEDRVK 182

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
                + D    +Q           +  +          +++  +     G       S 
Sbjct: 183 ARQIVLDDQATADQV---------YKQLIGGADFAELARQYSK-VGAEQGGAVGAEPGSS 232

Query: 242 LH----------PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLS 289
                       P    + +      T    T      + + +    G      +   + 
Sbjct: 233 EPGPVTRLVFPTPVADAVFQLKSGGMTEVIETGGRYYIVKVEEFLPGGDVPYEEVADRVK 292

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +     K       Y++++R  A++ +
Sbjct: 293 SDALSVKQNGAVENYIREVRDRAVVKF 319


>gi|302879437|ref|YP_003848001.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gallionella
           capsiferriformans ES-2]
 gi|302582226|gb|ADL56237.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gallionella
           capsiferriformans ES-2]
          Length = 261

 Score = 79.3 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 74/285 (25%), Gaps = 47/285 (16%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIA--LLKLQKINGELEKIAVQELIVETLKKQEIE 91
                  +    +N   I+   +   +   L + Q    EL K  + +LI   +  Q   
Sbjct: 19  NPAFAEDKSAAVVNKVAISQERVEMNVKSALAQGQADTPELRKAILDDLINREVMAQAAT 78

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
            SG+   ++ V                                        +    V+  
Sbjct: 79  ASGLDKSADVVQQI------------------------------NLAKQTVLINAFVQEQ 108

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                          +     +  +EY  R +L              +   ++      +
Sbjct: 109 LKKNPVTDAQLQAGYETLKSKLGDKEYSARHIL-----------VATEAEARNLIAQLGK 157

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQY-LLESDLHPQFQNLLKKSQNNTTN-PYVTQKGVEY 269
             K     EK          G   + + ++ + P    LL   +   T  P  TQ G   
Sbjct: 158 KAKFEKLAEKSKDTGSAERGGALGWTVPKNFVEPFANALLNLKKGEYTKDPVQTQFGWHV 217

Query: 270 IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           I + D R L         +  Q      ++   + +  LR+ A I
Sbjct: 218 IKLDDMRALKV--PSFDEIKPQLLQRLQQQAIQKIITDLRAAAKI 260


>gi|229070337|ref|ZP_04203584.1| Foldase protein prsA 1 [Bacillus cereus F65185]
 gi|229080050|ref|ZP_04212578.1| Foldase protein prsA 1 [Bacillus cereus Rock4-2]
 gi|228703174|gb|EEL55632.1| Foldase protein prsA 1 [Bacillus cereus Rock4-2]
 gi|228712775|gb|EEL64703.1| Foldase protein prsA 1 [Bacillus cereus F65185]
          Length = 303

 Score = 79.3 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 86/305 (28%), Gaps = 44/305 (14%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           L     V+    +   +S  +   S  I TT +G  I++ D +K++             K
Sbjct: 24  LKRKKLVIGSILMGMTLSLSACGSSDNIVTTKSGS-ISESDFNKKLK--------ENYGK 74

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             + E++VE +   + + +                        E      D         
Sbjct: 75  QNLSEMVVEKVLNDKYKVTDEEVT---------------KQLKELKDKMGDNFNTYMESN 119

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                 Q      +   F         E          + V   L++             
Sbjct: 120 GVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYKPKLQVSHILVK------------- 166

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK- 252
               +K  K+ +E            ++++         G+        +  +F++   K 
Sbjct: 167 ---DEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVKEFEDAAYKL 223

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
                + P  +  G   I + DK++L      K  +  +    +I+  +   +  ++L  
Sbjct: 224 EVGQLSEPVKSSFGYHIIKLTDKKELKPYEEEKENIRKELEQQRIQDPQFHQQVTRELLK 283

Query: 311 NAIIH 315
           NA I 
Sbjct: 284 NADIK 288


>gi|171463167|ref|YP_001797280.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171192705|gb|ACB43666.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 270

 Score = 79.3 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 41/306 (13%), Positives = 92/306 (30%), Gaps = 45/306 (14%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRI--RTTINGEVITDGDISKRIALLKLQKING-- 70
           ++  +  + IF    +    +      I    ++NG +IT+  + + I     Q      
Sbjct: 1   MMVRFIAVGIFAGASLGHTWAQQSGLPINAAASVNGVIITNDMVEQGIKAALSQGQKDSP 60

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
           EL K  V++ I   L  Q+ EK G+               R   L+  + S+++ K  I 
Sbjct: 61  ELRKAVVEKFIKVLLLSQQAEKDGLANSERANTQL--AMIRQNYLADLEMSTYMSKNPIT 118

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
           D   +     +             K  ++ +                             
Sbjct: 119 DADVQAEYNKEIASLSPQGMIVEYKVSDIAV----------------------------- 149

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL- 249
                   +   + A     +        +  +   + V  G   ++    + PQ  +  
Sbjct: 150 ------ATEADAQAALARIKKGEAFDKVAKSVSLAPNKVQGGAVGWIQPGQVAPQLASTL 203

Query: 250 LKKSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
              S+   +  P   Q+G   I + DK+    ++               ++ + E++ ++
Sbjct: 204 TTLSKGQVSPAPIQMQQGWYLIKLEDKK--SSKLPSFEQAKQAIRTGLTQRKQFEFLGQI 261

Query: 309 RSNAII 314
             +A I
Sbjct: 262 AKDAKI 267


>gi|283779709|ref|YP_003370464.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pirellula staleyi
           DSM 6068]
 gi|283438162|gb|ADB16604.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pirellula staleyi
           DSM 6068]
          Length = 490

 Score = 79.3 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/282 (8%), Positives = 73/282 (25%), Gaps = 15/282 (5%)

Query: 48  GEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF- 106
              +  GD  + I     +    E+ K   + +  +  K+    +  +            
Sbjct: 189 DMKVLYGDFERNIEKNAGRDKLDEIRKNIDRRMRDQFEKELASMREKVRKAKPAELQAML 248

Query: 107 ----------VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
                     +    +   +  D    L K G      ++Y    ++    V  +     
Sbjct: 249 ARDPQMPVVAMLMEEHQIENLGDLDLLLRKYGSSLEKTQRYYRESTLGRSQVAENVREIP 308

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
                 +    Q        +   R  + S+       +    + I              
Sbjct: 309 EVTHKAMLDYYQSHAEDFALQARARFEMMSVKFVGFPTRQAAYQTIGQMGNEVFYGAPFE 368

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKKSQNNTTNPYVTQKGVEYIAICD 274
           +  +K++        G   +  +  L  +   + +        +     ++G   + + +
Sbjct: 369 SVAKKYSQDPSASRGGYFDWTQQGALSTEVLDRAVFSLEPGKLSQILEDERGYYIVRVIE 428

Query: 275 KRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           + + G       +  +         E++   Y+ K++    I
Sbjct: 429 REEAGSVPFEVAQTKIKDAIETQYREENYRNYLTKVKQQTTI 470


>gi|297587540|ref|ZP_06946184.1| peptidyl-prolyl cis-trans isomerase [Finegoldia magna ATCC 53516]
 gi|297574229|gb|EFH92949.1| peptidyl-prolyl cis-trans isomerase [Finegoldia magna ATCC 53516]
          Length = 321

 Score = 79.3 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/321 (11%), Positives = 82/321 (25%), Gaps = 20/321 (6%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN------- 69
              F+ I+  ++ ++              I  E I   D+ K +   K            
Sbjct: 1   MKKFLAIVLAVMMVMVTGCSKKPDGAVAKIGKEYIYQKDVDKVMEDYKQYYGQDIFNPNT 60

Query: 70  -------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
                   +++   +  LI E +  + ++   I      V     +  +  G + +    
Sbjct: 61  EQGKEALKQIQPKIIDMLINEKIANKLMKDKKIEVSDKEVQAEVDKLQKQLGGADKFKEQ 120

Query: 123 FLDKQGIGD--NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
              +           +            + DF      ++ E   N            L 
Sbjct: 121 LKKENMTEQALKEQIEKQLKNKKLSQQFEKDFKPSDKEIKDEFDKNLDTYTQYNADHILF 180

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD-VSIGKAQYLLE 239
                   +          +      E            +  +       + GK    L 
Sbjct: 181 SGKDDKGKNLDDAKLKAKSELANKTYEEVKDGKNFNEVAKAKSEDPSAKQNSGKLGDFLS 240

Query: 240 SDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTK 296
           S +  +F +   K      + P  T+ G   I +  K     +   A K  +    +   
Sbjct: 241 STMVKEFSDALKKMKPGEVSKPVKTEFGYHIIKLNSKVTELDKMTDANKQNVKTAISNKI 300

Query: 297 IEKHEAEYVKKLRSNAIIHYY 317
           I++   +  +K + +  +  Y
Sbjct: 301 IQEKVQKEFEKQKKDMGVKIY 321


>gi|325498268|gb|EGC96127.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia
           fergusonii ECD227]
          Length = 611

 Score = 79.3 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 38/384 (9%), Positives = 98/384 (25%), Gaps = 85/384 (22%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-- 70
           +  +    +++ F +  +  Y     ++     +NG+ I+ G         + +      
Sbjct: 1   MLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNGQEISRGQFENAFNSERNRMQQQLG 59

Query: 71  --------------ELEKIAVQELIV-----------------ETLKKQEIEKSGITFDS 99
                          L +  +  LI                  E +K+          D 
Sbjct: 60  DQYSELAANEGYMKTLRQQVLNRLIDEALLDQYSRDLKLGISDEQVKQAIFATPAFQVDG 119

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN--------HFKQYLAIQSIWPDVVKND 151
              N  +       G+SA+ ++  L  Q              F        +   V +  
Sbjct: 120 KFDNSRYNAILNQMGMSADQYAQALRNQLTTQQLINGIAGTDFMLKGETDELAALVSQQR 179

Query: 152 FMLKYGNL-----------EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
            + +               + EI +   + KN  V     R     +    +Q       
Sbjct: 180 VVREATIDVNAKAEKQQVSDAEITSYYDQHKNNFVTPEQFRVSYIMLDAANIQQPVSDAD 239

Query: 201 RIKDAEESRLRL-----------------------------PKDCNKLEKFASKI-HDVS 230
                ++ + +                                     ++ ++ I    +
Sbjct: 240 IQAYYDQHQDQFTQPQRVRYSIIQTKTENEAKAVLDALNNGGDFAELAKEKSADIISARN 299

Query: 231 IGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEI--ALKAYL 288
            G   +L +S    + ++   K +   +    +  G   + + D +    +    ++  +
Sbjct: 300 GGDLGWLEDSTTPQELKDAGLKDKGQLSGVIKSSVGFLVVRLDDVQPAKVKTLAEVRDDI 359

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNA 312
           +A+    K         +K+   A
Sbjct: 360 AAKVKHEKALDAYYALQQKVSDAA 383


>gi|66044996|ref|YP_234837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. syringae B728a]
 gi|63255703|gb|AAY36799.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. syringae B728a]
          Length = 627

 Score = 79.3 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 63/194 (32%), Gaps = 6/194 (3%)

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                     F     +   + ++ K+ F  K    + ++ A  QK       +     +
Sbjct: 215 KAHYDEHAKEFMSPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIANLSEQRRAAHI 274

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL 242
           L     N   N    + +I++ ++   +        ++++         G   Y  +   
Sbjct: 275 LI--EVNDKLNDEQAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSNKGGDLGYAGKGVY 332

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEK 299
            P F+  L   +++  + P  T  G   I +       +    +LK  L+       +E+
Sbjct: 333 DPAFEEALYALNKDQVSQPVRTDFGWHLIKLLGVEAPSVPSFASLKGKLTNDLKSQLVEQ 392

Query: 300 HEAEYVKKLRSNAI 313
              E  K+L  +A 
Sbjct: 393 KFVEVTKQLEDSAF 406



 Score = 63.5 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/327 (8%), Positives = 82/327 (25%), Gaps = 33/327 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++ +     I +  +   + +    +NGE I+  ++S+ +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIIALMAFTGIEAMFTATSNKQNAAEVNGEDISQNELSQAV 60

Query: 61  ALLK-----------------LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            + +                        L + A++ LI   L  Q    +  +F    ++
Sbjct: 61  DMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADARFSFSDAALD 120

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE-ME 162
              +Q          +   F            Q+   Q +  +++             + 
Sbjct: 121 QQLLQTPEFQVDGKFNADRFDQVIRQLGYSRLQF--RQMLGQEMLIGQVRAGVAGSAFVT 178

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
               +   +            L +           V+    +  +  +   +      + 
Sbjct: 179 DAQVEAFARLEKQTRDFASLTLPADTSAVKVTDDEVKAHYDEHAKEFMSPEQVVLDYIEL 238

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY-IAICDKRDLGGE 281
                        +  +  +  +      +      N    ++     I + DK +    
Sbjct: 239 KKSS---------FFDKVQVKDEDLQAAYQK--EIANLSEQRRAAHILIEVNDKLNDEQA 287

Query: 282 IALKAYLSAQNTP-TKIEKHEAEYVKK 307
            A    +  +            EY + 
Sbjct: 288 KAKIEEIQQRLAKGEDFAALAKEYSQD 314



 Score = 36.6 bits (82), Expect = 4.9,   Method: Composition-based stats.
 Identities = 29/254 (11%), Positives = 70/254 (27%), Gaps = 9/254 (3%)

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
            G+L      +L+ +   +     +    DS   +    Q A++ GL  +  + F  + G
Sbjct: 378 KGKLTNDLKSQLVEQKFVEV----TKQLEDSAFESSDLSQPAQDLGLKVQTTAPFGREGG 433

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
            G    +  +        + +             +   + K      +  L         
Sbjct: 434 EGLTANRAVIQAAFSPEVLEEGANSNTLELDPETVVVVRSKEHLQPQQLPLESVASSIRA 493

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS--IGKAQYLLESDLHPQF 246
               ++     K   +A  + LR  K     ++       +       + +    L   F
Sbjct: 494 QLVKEHASAAAKAKGEALLAGLRDGKIPLAAKQEGRDWKVMEAVTRSQEGVDPQVLQTLF 553

Query: 247 QNLLKKSQN--NTTNPYVTQKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEKHEAE 303
           +      ++     +   +      + +             KA      +  + ++  A 
Sbjct: 554 RMPKPTGKDKPEFASITASDGSFVIVRLNGVNQAAAPTDAEKAQYRRFLSSREGQQDFAA 613

Query: 304 YVKKLRSNAIIHYY 317
           Y  +L S A I  +
Sbjct: 614 YRAQLESKAKIEKF 627


>gi|86130559|ref|ZP_01049159.1| peptidylprolyl isomerase [Dokdonia donghaensis MED134]
 gi|85819234|gb|EAQ40393.1| peptidylprolyl isomerase [Dokdonia donghaensis MED134]
          Length = 484

 Score = 79.3 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/284 (11%), Positives = 81/284 (28%), Gaps = 14/284 (4%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKI--NGELEKIAVQELIVETLKKQEIEKSGITF 97
             +   +   +I + DI K ++ +K Q    +       +  L+   L   +  +  +  
Sbjct: 62  DGVAGVVGEYLILESDIDKFLSDIKNQGQAASEVTPCQVMGNLLESKLLAHQAVQDSLIV 121

Query: 98  DSNTVN----YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
               VN        + +   G   +    +              +    I  +++ +  +
Sbjct: 122 QDARVNSEVDQIIQRFSSQLGSEQKVVEFYKKDNMADLRAELFGIRKDIILSELMNDKII 181

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK----DAEESR 209
                   E+    + +    V    +   +  I      ++   QK I        +  
Sbjct: 182 ETVDVTPDEVKTFFESIPEDQVPTVGVELEISRIVIEPKASEEERQKVIDRLKGFRRDIL 241

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESD-LHPQFQNLLKK-SQNNTTNPYVTQKGV 267
                   K   +       S G    +  +  L  +F+++         + P+ T+ G 
Sbjct: 242 ENGSSFATKAVLYTQDPGSRSEGGLMVIDRNTPLVKEFRDVAFSLQDGEISEPFETEFGF 301

Query: 268 EYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             + +   R    +  ++  L         E+   + VK +R  
Sbjct: 302 HIVYVEKTRGERKD--IRHILLVPEIKEAQEEEAKDLVKLVRKR 343


>gi|302876602|ref|YP_003845235.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           cellulovorans 743B]
 gi|307687276|ref|ZP_07629722.1| peptidylprolyl isomerase [Clostridium cellulovorans 743B]
 gi|302579459|gb|ADL53471.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           cellulovorans 743B]
          Length = 339

 Score = 79.3 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/335 (10%), Positives = 95/335 (28%), Gaps = 26/335 (7%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL-- 63
             ++   +  +    ++I      I      A + ++   +  + IT G++   +     
Sbjct: 1   MKNIKKLVTAVMLGTMIISVSACGIAEKTPAAKAKQVVAKVGEKKITRGEVDTAMQSYID 60

Query: 64  --------------KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN----TVNYF 105
                         +  K      +  ++ ++   L  Q IE + +  + +      +  
Sbjct: 61  EAKAKYGEKYETSKEAMKSINAQREAQLKNMVDTELMLQYIEDNNLEINMDEINSETDKE 120

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
             +   + G   E     + K         +         D  K          + E+  
Sbjct: 121 IEKMKTDYGQGDEQKYIDVLKNAGFTPESFKEYTKNRKLTDKAKEAIGKDITVSDEELAT 180

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
           +  +    T +  +       I ++  +++   ++    A           +  +K++  
Sbjct: 181 SFNEETFKTEKANIKHVQYILIKNDANEDKAKNKEIADAALAEIKGGLSFADAAKKYSED 240

Query: 226 IH-DVSIGKAQYLL-ESDLHPQF-QNLLKKSQNNTTNPYVTQ-KGVEYIAICDKRDLGGE 281
                + G    +  +S L   F +  L  +    +        G   I      +    
Sbjct: 241 SSTSQTGGYLGEVTDQSQLVEGFLKAALALNPGQVSEIIDEPTYGFFIIKALPIEEAIPF 300

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
              K+   A     K      E +++LRS+ +  Y
Sbjct: 301 EKEKS--KASLLQEKQSSKYTEVLEQLRSDKVKEY 333


>gi|110803835|ref|YP_699739.1| peptidylprolyl isomerase [Clostridium perfringens SM101]
 gi|123047143|sp|Q0SQ68|PRSA_CLOPS RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|110684336|gb|ABG87706.1| putative foldase protein PrsA [Clostridium perfringens SM101]
          Length = 342

 Score = 79.3 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 39/333 (11%), Positives = 89/333 (26%), Gaps = 24/333 (7%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
             S+   +       ++       +V     A+      T+NGE IT G++   +  +  
Sbjct: 1   MVSVKKIVASALVGVLMFSAVGCNMVEKTQAAIDKTTVATVNGEKITLGEVDSHLKGVFT 60

Query: 66  QKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
           Q  +                 +  +  +  L+ E +   E  K  I      +N    Q 
Sbjct: 61  QMKSQYGDKYMDDPQVAQQILQQRQGILNSLVEEKILVVEANKENIVPSEEELNKKIEQQ 120

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
            +       +       + +G N        + +    + +                 QK
Sbjct: 121 IKLYKEQYGEEGYKKAVESMGYNEDTFK---EYLKNQFIADAAASNASKDIKVTDEEAQK 177

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE--KFASKIH 227
             +   +++ ++           +N+   QK   + +  +        K E  K   K  
Sbjct: 178 YYDENKKQFEVQAKGVLARHLLFENEEEAQKAYDEIQSGKTTFNDLFTKYENNKLEKKTP 237

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAI---CDKRDLGGEIAL 284
                              + L    +   + P  TQ G   I      +K        +
Sbjct: 238 IAESFVVPDENAQVAKEFVEGLKSLKEGEISKPIKTQFGYHIIQAGATYEKGAQLPFNEV 297

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           K+ +       K  +     + + + +  +  Y
Sbjct: 298 KSQIIQILKQQKDSQKLKSDMDQWKKDLNVKVY 330


>gi|147119|gb|AAA24304.1| unknown [Escherichia coli str. K-12 substr. W3110]
          Length = 98

 Score = 79.3 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 34/92 (36%), Gaps = 2/92 (2%)

Query: 227 HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDL-GGEIAL 284
                G   +       P F++   + ++   + P  +  G   I + D R++   + A 
Sbjct: 4   SANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQ 63

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           K          K  +  A ++++ R++A +  
Sbjct: 64  KDRAYRMLMNRKFSEEAASWMQEQRASAYVKI 95


>gi|229143873|ref|ZP_04272292.1| Foldase protein prsA 2 [Bacillus cereus BDRD-ST24]
 gi|228639634|gb|EEK96045.1| Foldase protein prsA 2 [Bacillus cereus BDRD-ST24]
          Length = 285

 Score = 79.3 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/304 (10%), Positives = 76/304 (25%), Gaps = 43/304 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F++     + ++S       S    T     IT          LK +     L ++ 
Sbjct: 4   KHIFIITALISILMLSACGQKNGSATVATATDSTITK---DNFEKQLKDRYGKDMLYEMM 60

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
            Q++I +  K               VN    +  +  G        F           ++
Sbjct: 61  AQDIITKKYK----------VPDEEVNKEVEKVKKQYG------DQFKKVLENYGLKDEE 104

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   +           +++                      +           
Sbjct: 105 DFKNQIKFKLAMNEAIKKSITEKDVKD--------------------HYKPEIKASHILV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +   K+ +             ++ +  +      G   Y     + P+F+    K + 
Sbjct: 145 SDENEAKEIKSKLDAGASFEELAKQESQDLLSKDKGGDLGYFNSGTMAPEFETAAYKLNI 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNA 312
              +NP  +  G   I + DK+ L     +K  +       +        + +++    A
Sbjct: 205 GQISNPVKSSNGYHVIKLTDKKALKPYDEVKDSIRKNLEEERTADPVFSKKLLQEELKKA 264

Query: 313 IIHY 316
            I  
Sbjct: 265 NIKI 268


>gi|229151073|ref|ZP_04279281.1| Foldase protein prsA 1 [Bacillus cereus m1550]
 gi|228632384|gb|EEK89005.1| Foldase protein prsA 1 [Bacillus cereus m1550]
          Length = 303

 Score = 79.3 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 85/305 (27%), Gaps = 44/305 (14%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           L     V+    +   +S  +   S  I TT +G  I++ D +K++             K
Sbjct: 24  LKRKKLVIGSILMGMTLSLSACGSSDNIVTTKSGS-ISESDFNKKLK--------ENYGK 74

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             + E++VE +   + + +                        E      D         
Sbjct: 75  QNLSEMVVEKVLNDKYKVTDEEVT---------------KQLKELKDKMGDNFNTYMESN 119

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                 Q      +   F         E          + V   L++             
Sbjct: 120 GVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYKPKLQVSHILVK------------- 166

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK- 252
               +K  K+ +E            ++++         G+        +  +F++   K 
Sbjct: 167 ---DEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVKEFEDAAYKL 223

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
                + P  +  G   I + DK++L      K  +  +    +I+  +   +  + L  
Sbjct: 224 EVGQLSEPVKSSFGYHIIKLTDKKELKPYEEEKENIRKELEQQRIQDPQFHQQVTRDLLK 283

Query: 311 NAIIH 315
           NA I 
Sbjct: 284 NADIK 288


>gi|229110311|ref|ZP_04239883.1| Foldase protein prsA 1 [Bacillus cereus Rock1-15]
 gi|228673051|gb|EEL28323.1| Foldase protein prsA 1 [Bacillus cereus Rock1-15]
          Length = 303

 Score = 78.9 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 86/305 (28%), Gaps = 44/305 (14%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           L     V+    +   +S  +   S  I TT +G  I++ D +K++             K
Sbjct: 24  LKRKKLVIGSILMGMTLSLSACGSSDNIVTTKSGS-ISESDFNKKLK--------ENYGK 74

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             + E++VE +   + + +                        E      D         
Sbjct: 75  QNLSEMVVEKVLNDKYKVTDEEVT---------------KQIKELKDKMGDNFNTYMESN 119

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                 Q      +   F         E          + V   L++             
Sbjct: 120 GVKNEAQLKEKLKLTFAFEKAIKATVTEKDIKDHYKPKLQVSHILVK------------- 166

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK- 252
               +K  K+ +E            ++++         G+        +  +F++   K 
Sbjct: 167 ---DEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVKEFEDAAYKL 223

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
                + P  +  G   I + DK++L      K  +  +    +I+  +   +  ++L  
Sbjct: 224 EVGQLSEPVKSSFGYHIIKLTDKKELKPYEEEKDNIRKELEQQRIQDPQFHQQVTRELLK 283

Query: 311 NAIIH 315
           NA I 
Sbjct: 284 NADIK 288


>gi|153951819|ref|YP_001397624.1| hypothetical protein JJD26997_0433 [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939265|gb|ABS44006.1| conserved hypothetical protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 271

 Score = 78.9 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 80/296 (27%), Gaps = 32/296 (10%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           I+       S  S    + I   ++ E IT  DI + +  LK+          A+  LI 
Sbjct: 4   ILLSFAFFASLASANTINAIAVVVDKEPITTYDIDQTMKALKID------RNKALGILIN 57

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           E ++  ++++ GI  +   ++    +       +   F + L  +      F+       
Sbjct: 58  EKMEISQMKQLGIVVNDLELDDAINKMLTQNKTTLNAFKANLKSKNQSYEQFRANFKKDL 117

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
               +              +  A K   +N     +  +        N  Q    ++   
Sbjct: 118 EKRKL-YEKISNMAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYLSNNPQTLENIKNTK 176

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYV 262
           K   + +                              +        L +    + +    
Sbjct: 177 KIILKPQNASLN-----------------------TSNTDPRLLGLLSQIPVGDFSPVLN 213

Query: 263 TQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + G E   +  K          +K  +       + +    +Y  KLRS   I Y
Sbjct: 214 GKNGYELYEVKSKDGAQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKINIEY 269


>gi|332284989|ref|YP_004416900.1| putative peptidyl-prolyl cis-trans isomerase [Pusillimonas sp.
           T7-7]
 gi|330428942|gb|AEC20276.1| putative peptidyl-prolyl cis-trans isomerase [Pusillimonas sp.
           T7-7]
          Length = 258

 Score = 78.9 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 91/278 (32%), Gaps = 46/278 (16%)

Query: 43  RTTINGEVITDGDISKRIALLKLQ--KINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
             T+NG+ IT   + + +ALL  Q  +   EL     QE++   +  Q  EK+G   D  
Sbjct: 22  VATVNGKAITQDKLDQFVALLIEQGAQDTPELRTQVKQEMVNRLVAVQAAEKAG--IDKQ 79

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                 ++ AR   L     +  L K                               + +
Sbjct: 80  AAVKQEIELARQGILVRALMADHLKKNP---------------------------VTDAK 112

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
           ++   +K K      +EY +R +L              +         + +        +
Sbjct: 113 IQAEYDKIKKLQADKQEYKVRHILV----------KDQKAAEDLTAAIKSKKVTFEAAAK 162

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT-NPYVTQKGVEYIAICDKRD 277
           K +       + G   +   ++  P+F + ++K  +   T  P  +Q G   I + D RD
Sbjct: 163 KDSIDPGSGKNGGDLGWAPSTNYVPEFADAVEKLKKGQMTDKPVQSQFGWHIIQVDDTRD 222

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +         +  Q      ++  AE+   L  NA I 
Sbjct: 223 VKFPELA--EVKPQIEEMLRQQQLAEFQDSLMKNADIK 258


>gi|317153443|ref|YP_004121491.1| hypothetical protein Daes_1733 [Desulfovibrio aespoeensis Aspo-2]
 gi|316943694|gb|ADU62745.1| hypothetical protein Daes_1733 [Desulfovibrio aespoeensis Aspo-2]
          Length = 372

 Score = 78.9 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 92/312 (29%), Gaps = 30/312 (9%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +   + V ++F ++   S     +   I   +NGE I    +  +    +++ + G +  
Sbjct: 1   MFRKFAVFMVFILLAGCSDTVDEI--GIVARVNGEPIYLSQLEFQHDQFQVETVGGYVPS 58

Query: 75  ---------IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
                      + ELIV+ L  QE+    I    + +     +   +       F   L 
Sbjct: 59  VEKLKAEYGEILTELIVQELVVQELVNQDIGVTDHELLKAEEEVRTD--YPEGAFDQMLV 116

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
           ++ I    ++  L                +     +E     +   +       +R +L 
Sbjct: 117 EEYIDLKTWRLQLRNHLAMRKFFHQVLRPQIKIDYLEAERYYRDRISDFYLPESLR-ILV 175

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ 245
               ++      V+K   + ++  L       +  +               L E  L   
Sbjct: 176 VRGPSREIVGKAVEKFRAERDQVDLATAFGEVQTREVV-------------LREERLSTI 222

Query: 246 FQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY--LSAQNTPTKIEKHEA 302
           ++N          +     + G E + + ++         +AY  +       K++    
Sbjct: 223 WKNALTGLKAGQASGVLTDRFGFEILVLLERSPAKVLEPAQAYPLVEKALLEIKLQDAFD 282

Query: 303 EYVKKLRSNAII 314
            +     + A I
Sbjct: 283 AWFSSTVARASI 294


>gi|330972584|gb|EGH72650.1| periplasmic folding chaperone [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 627

 Score = 78.9 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 63/194 (32%), Gaps = 6/194 (3%)

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                     F     +   + ++ K+ F  K    + ++ A  QK       +     +
Sbjct: 215 KAHYDEHAKEFMSPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIANLSEQRRAAHI 274

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL 242
           L     N   N    + +I++ ++   +        ++++         G   Y  +   
Sbjct: 275 LI--EVNDKLNDEQAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSNKGGDLGYAGKGVY 332

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEK 299
            P F+  L   +++  + P  T  G   I +       +    +LK  L+       +E+
Sbjct: 333 DPAFEEALYALNKDQVSQPVRTDFGWHLIKLLGVEAPSVPSFASLKGKLTNDLKSQLVEQ 392

Query: 300 HEAEYVKKLRSNAI 313
              E  K+L  +A 
Sbjct: 393 KFVEVTKQLEDSAF 406



 Score = 63.5 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/326 (8%), Positives = 83/326 (25%), Gaps = 31/326 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++ +     I +  +   + +    +NGE I+  ++S+ +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIIALMAFTGIEAMFTATSNKQNAAEVNGEDISQNELSQAV 60

Query: 61  ALLK-----------------LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            + +                        L + A++ LI   L  Q    +  +F    ++
Sbjct: 61  DMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSDAALD 120

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
                 A    +  +  +   D+      + +           ++        G+  +  
Sbjct: 121 QQL-LQAPEFQVDGKFNADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
              +   +            L +           V+    +  +  +   +      +  
Sbjct: 180 AQVEAFARLEKQTRDFASLTLPADTSAVKVTDDEVKAHYDEHAKEFMSPEQVVLDYIELK 239

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY-IAICDKRDLGGEI 282
                       +  +  +  +      +      N    ++     I + DK +     
Sbjct: 240 KSS---------FFDKVQVKDEDLQAAYQK--EIANLSEQRRAAHILIEVNDKLNDEQAK 288

Query: 283 ALKAYLSAQNTP-TKIEKHEAEYVKK 307
           A    +  +            EY + 
Sbjct: 289 AKIEEIQQRLAKGEDFAALAKEYSQD 314



 Score = 36.6 bits (82), Expect = 5.1,   Method: Composition-based stats.
 Identities = 29/254 (11%), Positives = 70/254 (27%), Gaps = 9/254 (3%)

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
            G+L      +L+ +   +     +    DS   +    Q A++ GL  +  + F  + G
Sbjct: 378 KGKLTNDLKSQLVEQKFVEV----TKQLEDSAFESSDLSQPAQDLGLKVQTTAPFGREGG 433

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
            G    +  +        + +             +   + K      +  L         
Sbjct: 434 EGLTANRAVIQAAFSPEVLEEGANSNTLELDPETVVVVRSKEHLQPQQLPLESVASSIRA 493

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS--IGKAQYLLESDLHPQF 246
               ++     K   +A  + LR  K     ++       +       + +    L   F
Sbjct: 494 QLVKEHASAAAKAKGEALLAGLRDGKIPLAAKQEGRDWKVMEAVTRSQEGVDPQVLQTLF 553

Query: 247 QNLLKKSQN--NTTNPYVTQKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEKHEAE 303
           +      ++     +   +      + +             KA      +  + ++  A 
Sbjct: 554 RMPKPTGKDKPEFASITASDGSFVIVRLNGVNQAAAPTDAEKAQYRRFLSSREGQQDFAA 613

Query: 304 YVKKLRSNAIIHYY 317
           Y  +L S A I  +
Sbjct: 614 YRAQLESKAKIEKF 627


>gi|317504767|ref|ZP_07962726.1| peptidyl-prolyl cis-trans isomerase [Prevotella salivae DSM 15606]
 gi|315664098|gb|EFV03806.1| peptidyl-prolyl cis-trans isomerase [Prevotella salivae DSM 15606]
          Length = 480

 Score = 78.9 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/288 (11%), Positives = 82/288 (28%), Gaps = 17/288 (5%)

Query: 33  YKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--GELEKIAVQELIVETLKKQEI 90
               ++   +   +  E I   DI +     +++ +   G  +    +++ V+ L   + 
Sbjct: 47  IPEHSVIDEVEWVVGDEPIMKSDIEQMRLQGEIEGMKWGGNPDCRIPEQIAVQKLFLHQA 106

Query: 91  EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
               I    + +     Q       S        + QG   +  +  L        +++ 
Sbjct: 107 ILDSIEVTESDIAQTVEQQINLWINSVGSKEKLEEYQGKSISQIRSDLHDDVKNSKMIQQ 166

Query: 151 ---DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
                M        ++    + +   ++        +  +       Q  + +       
Sbjct: 167 MKRKIMGNVSVTPADVRRYFKNLPEDSIPFIPTEVEVEILVRKPRIPQSEINRIKDQLRN 226

Query: 208 SRLRLPKDCNKLEKFASKIHD-----VSIGKAQYLLESDLHPQFQNLLKKSQN--NTTNP 260
              R+ K        A    +        G+  Y     L P F ++     +    +  
Sbjct: 227 FTDRVNKGETSFSTLARLYSEDPGTSRQGGEMDYTGRGTLDPAFASVAFNLTDPKKISKI 286

Query: 261 YVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
             ++ G   I + DKR   G+     ++    TP    +   + + +L
Sbjct: 287 VESEFGYHIIQLIDKR---GDKIKVRHIL--LTPKVSNEDMNKALSRL 329


>gi|65319635|ref|ZP_00392594.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Bacillus
           anthracis str. A2012]
          Length = 283

 Score = 78.9 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/308 (9%), Positives = 83/308 (26%), Gaps = 48/308 (15%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKINGELE 73
           +      L       +++  +   S  +    +    IT+ ++SK +          +  
Sbjct: 1   MKKKKLFLGTIISCVVLALSACGSSDNVVXSKVGN--ITEKELSKELR--------QKYG 50

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           +  + ++++      + + S                     +     S+        ++ 
Sbjct: 51  ESTLYQMVLSKALLDKYKVSDEEAKKQVEE-------AKDKMGDNFKSTLEQVGLKNEDE 103

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
            K+ +  +  +   +K     K      +       +                       
Sbjct: 104 LKEKMKPEIAFEKAIKATVTEKDVKDNYKPEMKVSHILVKD------------------- 144

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK 252
                +K  K+ +E            ++++         G+           +F+    K
Sbjct: 145 -----EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYK 199

Query: 253 -SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY----VKK 307
                 + P  T  G   I + DK++L     +K  +       +++    ++    V +
Sbjct: 200 LDAGQVSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNE 259

Query: 308 LRSNAIIH 315
           L  +A I 
Sbjct: 260 LLKDADIK 267


>gi|288803875|ref|ZP_06409300.1| putative PPIC-type PPIASE domain protein [Prevotella melaninogenica
           D18]
 gi|288333640|gb|EFC72090.1| putative PPIC-type PPIASE domain protein [Prevotella melaninogenica
           D18]
          Length = 488

 Score = 78.9 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 25/302 (8%), Positives = 86/302 (28%), Gaps = 35/302 (11%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K +T  F +I+  ++ + +  ++  +     TING+ ++  +              G +
Sbjct: 10  VKRITMKFKVILSALL-LSTTMAYGQTDPTIMTINGQPVSRSEFEYSYN---KNNAEGVI 65

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +K +V E +   +  +   ++ +    +T++ F  +                       +
Sbjct: 66  DKKSVDEYVDLFINYKLKVQAALDAHLDTLSSFKKEFLSYRNQQVRPTFITDADVEAEGH 125

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
              +    Q                             +           ++    +   
Sbjct: 126 KLYREAQQQV----------------------------EANGGMWNCAHILIGLYQNADK 157

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNL-L 250
           +     ++       +           +K+++     ++ G+  +L +    P+F+    
Sbjct: 158 EAAEAAKQLADSLYNALRGGADFAELAKKYSTDVNSAMNGGQLLHLQKGQTVPEFEKALF 217

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT-KIEKHEAEYVKKLR 309
                  + P ++  G   I +  +        L+  +          E+   + +  + 
Sbjct: 218 ALKPGEISAPVLSPFGYHIIKMGGRESFPTYETLRPEIMQYIEMQGLREQIIDQKLDSIV 277

Query: 310 SN 311
            +
Sbjct: 278 ES 279


>gi|300022454|ref|YP_003755065.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299524275|gb|ADJ22744.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 292

 Score = 78.9 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/280 (10%), Positives = 74/280 (26%), Gaps = 43/280 (15%)

Query: 44  TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            +++G VI+   I+  +     +         A   +I E L ++               
Sbjct: 33  VSVDGIVISSKAIAAEVQNFPSRNPGEGWLAAARALVIRELLLQEA-------------- 78

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
                                    + +         +++   +V+     +      + 
Sbjct: 79  --------------------RRLNIVAEPKADVDGREETVDDALVRGLIEREVRVPVADE 118

Query: 164 -----PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR-LRLPKDCN 217
                     + +  +   Y    +L     +   +    ++R             +   
Sbjct: 119 ATSHRFYENNRRRFTSAALYEADHILIGARRDDDASYAAARERATSIAAVLATEPDQFAE 178

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR 276
               +++       G    +   D   +F+  L   +    + P  T+ GV  I +  + 
Sbjct: 179 LARAWSACPSATLGGSLGQIAPGDTTEEFEAALVSLAPGEISGPVETRYGVHVIRLNRRI 238

Query: 277 DLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           +       A++  + A        +  A+Y+  L   A I
Sbjct: 239 EGNTLPFEAVRERIEAYLDDHVRRQATAQYIALLVGRADI 278


>gi|330975097|gb|EGH75163.1| periplasmic folding chaperone [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 393

 Score = 78.9 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 60/172 (34%), Gaps = 6/172 (3%)

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
           ++ K+ F  K    + ++ A  QK       +     +L     N   N    + +I++ 
Sbjct: 3   ELKKSSFFDKVQVKDEDLQAAYQKEIANLSEQRRAAHILI--EVNDKLNDEQAKAKIEEI 60

Query: 206 EESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVT 263
           ++   +        ++++         G   Y  +    P F+  L   +++  + P  T
Sbjct: 61  QQRLAKGEDFAALAKEYSQDPGSSNKGGDLGYAGKGVYDPAFEEALYALNKDQVSQPVRT 120

Query: 264 QKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             G   I +       +    +LK  L+       +E+   E  K+L  +A 
Sbjct: 121 DFGWHLIKLLGVEAPSVPTFASLKGKLTNDLKSQLVEQKFVEVTKQLEDSAF 172



 Score = 37.7 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 29/254 (11%), Positives = 69/254 (27%), Gaps = 9/254 (3%)

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
            G+L      +L+ +   +     +    DS   +    Q A++ GL  +  + F  + G
Sbjct: 144 KGKLTNDLKSQLVEQKFVEV----TKQLEDSAFESSDLSQPAQDLGLKVQTTAPFGREGG 199

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
            G    +  +        + +             +   + K      +  L         
Sbjct: 200 EGLTANRAVIQAAFSPEVLEEGANSNTLELDPETVVVVRSKEHLQPQQLPLESVASSIRA 259

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS--IGKAQYLLESDLHPQF 246
               ++     K   +A  + LR  K     ++       +       + +    L   F
Sbjct: 260 QLVKEHASAAAKAKGEALLAGLRDGKIPLAAKQEGRDWKMMEAVTRSQEGVDPQVLQTLF 319

Query: 247 QNLLKKSQN--NTTNPYVTQKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEKHEAE 303
           +      ++     +   +      + +             KA         + ++  A 
Sbjct: 320 RMPKPTGKDKPEFASITASDGSFVIVRLNGVNQAAAPTDAEKAQYRRFLASREGQQDFAA 379

Query: 304 YVKKLRSNAIIHYY 317
           Y  +L S A I  +
Sbjct: 380 YRAQLESKAKIEKF 393


>gi|319654014|ref|ZP_08008107.1| hypothetical protein HMPREF1013_04726 [Bacillus sp. 2_A_57_CT2]
 gi|317394336|gb|EFV75081.1| hypothetical protein HMPREF1013_04726 [Bacillus sp. 2_A_57_CT2]
          Length = 290

 Score = 78.9 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/306 (13%), Positives = 97/306 (31%), Gaps = 37/306 (12%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           KLL +     +   +   S    + +  +        I+  D+   +          +  
Sbjct: 3   KLLISLSTAGLLIGLSACSSSQASDNDEVIAETKAGNISSDDLYIAMK--------EKYG 54

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           + A+QEL+ + + + + +      D            +   +  +  S+F       +  
Sbjct: 55  EQALQELLYKKVLEDKYKVEKEELD-----------KKVKEIKDQAGSNFEALLMQNNIK 103

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
            ++ L        +V+   +      + E+  + +  K      +++             
Sbjct: 104 DEKELKEILKEQLLVEKAAIQDIKVTDKELKESYENYKPEIKARHILL------------ 151

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK 252
                +K  KD +       K  +  ++F+         G   +     + P+F+     
Sbjct: 152 ---EDEKTAKDIKNRLNDGEKFEDLAKEFSKDPGSAEDGGDLGWFGSGKMVPEFEEAAYA 208

Query: 253 -SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI-EKHEAEYVKKLRS 310
              N  ++P  TQ G   I + +K++      ++  L  Q   +KI      E +KK   
Sbjct: 209 LEVNKFSDPIKTQNGYHIIQVTEKKEKESFEYMRKELEYQLKVSKIDNSKIEEVMKKEFE 268

Query: 311 NAIIHY 316
           +A +  
Sbjct: 269 DAKVKI 274


>gi|302187980|ref|ZP_07264653.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
           syringae 642]
          Length = 627

 Score = 78.9 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 64/194 (32%), Gaps = 6/194 (3%)

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                     F     +   + ++ K+ F  K    + ++ A  QK       +     +
Sbjct: 215 KAHYDEHAKEFMSPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIANLSEQRRAAHI 274

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL 242
           L     N   N+   + +I++ ++   +        ++++         G   Y  +   
Sbjct: 275 LI--EVNDKLNEEQAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSNKGGDLGYAGKGVY 332

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEK 299
            P F+  L   +++  + P  T  G   I +       +    +LK  L+       +E+
Sbjct: 333 DPAFEEALYALNKDQVSQPVRTDFGWHLIKLLGVEAPSVPTFASLKGKLTNDLKSQLVEQ 392

Query: 300 HEAEYVKKLRSNAI 313
              E  K+L  +A 
Sbjct: 393 KFVEVTKQLEDSAF 406



 Score = 56.2 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/327 (8%), Positives = 81/327 (24%), Gaps = 33/327 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++ +     I +  +   + +    +NGE I+  ++S+ +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEAMFTATSNKQNAAEVNGEDISQNELSQAV 60

Query: 61  ALLK-----------------LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            + +                        L + A++ LI   L  Q    +  +F    ++
Sbjct: 61  DMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADAKFSFSDAALD 120

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE-ME 162
              +Q              F            Q+   Q +  +++             + 
Sbjct: 121 QQLLQTPEFQVDGKFSADRFDQVIRQLGYSRLQF--RQMLGQEMLIGQVRAGVAGSAFVT 178

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
               +   +            L +           V+    +  +  +   +      + 
Sbjct: 179 DAQVEAFARLEKQTRDFASLTLPADTSAVKVTDDEVKAHYDEHAKEFMSPEQVVLDYIEL 238

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY-IAICDKRDLGGE 281
                        +  +  +  +      +      N    ++     I + DK +    
Sbjct: 239 KKSS---------FFDKVQVKDEDLQAAYQK--EIANLSEQRRAAHILIEVNDKLNEEQA 287

Query: 282 IALKAYLSAQNTP-TKIEKHEAEYVKK 307
            A    +  +            EY + 
Sbjct: 288 KAKIEEIQQRLAKGEDFAALAKEYSQD 314



 Score = 36.6 bits (82), Expect = 4.9,   Method: Composition-based stats.
 Identities = 29/254 (11%), Positives = 69/254 (27%), Gaps = 9/254 (3%)

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
            G+L      +L+ +   +     +    DS   +    Q A++ GL  +  + F  + G
Sbjct: 378 KGKLTNDLKSQLVEQKFVEV----TKQLEDSAFESSDLSQPAQDLGLKVQTTAPFGREGG 433

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
            G    +  +        + +             +   + K      +  L         
Sbjct: 434 EGLTANRAVIQAAFSPEVLEEGANSNTLELDPETVVVVRSKEHLQPQQLPLESVASSIRA 493

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS--IGKAQYLLESDLHPQF 246
               ++     K   +A  + LR  K     ++       +       + +    L   F
Sbjct: 494 QLVKEHASAAAKTKGEALLAGLRDGKIPLAAKQEGRDWKMMEAVTRSQEGVDPQVLQTLF 553

Query: 247 QNLLKKSQN--NTTNPYVTQKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEKHEAE 303
           +      ++     +   +      + +             KA         + ++  A 
Sbjct: 554 RMPKPTGKDKPEFASITASDGSFVIVRLNGVNQAAAPTDAEKAQYRRFLASREGQQDFAA 613

Query: 304 YVKKLRSNAIIHYY 317
           Y  +L S A I  +
Sbjct: 614 YRAQLESKAKIEKF 627


>gi|297538002|ref|YP_003673771.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera sp.
           301]
 gi|297257349|gb|ADI29194.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera sp.
           301]
          Length = 262

 Score = 78.9 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 90/298 (30%), Gaps = 48/298 (16%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDG--DISKRIALLKLQKINGELEKIAVQELI 81
               V I+S    A ++    T+NG+ I     D   + A  + QK++ ++++    +LI
Sbjct: 6   TLIAVAILSLAPAAFAADAVATVNGKQIKQSVYDYIAKDAASRGQKVDDQVKQAITNKLI 65

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
              L  QE +K G+   ++ V                                 +    +
Sbjct: 66  DSELVYQEAQKLGLDKQADYVARE------------------------------ELSRRE 95

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
            +    +++       +      A +Q  K    +EY  R +L              +  
Sbjct: 96  LLTSAYLQDFVKKNPISDADTKAAYEQYKKAYGDKEYSARHIL-----------VKTEAE 144

Query: 202 IKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN 259
            KD      +        ++ +         G   +   + +   F + +    +   + 
Sbjct: 145 AKDIIAQLGKGADFAKLAKEKSMDPGSKEKGGDLGWFSPATMVKPFSDAVAGLQKGAVSA 204

Query: 260 -PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            P  TQ G   I + D R           +         +++  + +  LR+ A I  
Sbjct: 205 TPAQTQFGWHVIKLVDTRSAQP--LPYDKVKDGLQKNLQQRNLEKMMSDLRTKAKIDI 260


>gi|113461230|ref|YP_719299.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus somnus 129PT]
 gi|112823273|gb|ABI25362.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus somnus 129PT]
          Length = 618

 Score = 78.9 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/393 (8%), Positives = 92/393 (23%), Gaps = 82/393 (20%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDG----DI 56
           +  K+  + S  +  +    + + F +  +  Y  +  +      +NGE I+        
Sbjct: 2   LMEKLNNASSGIVSKIIFGLIGVSFVLSGVAGYM-FIRTDTSVAKVNGEEISQQVFLQQY 60

Query: 57  SKRIALLKLQ----------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF 106
           +     L                  L    +  LI + L +Q  ++  +      V+   
Sbjct: 61  NNEYQRLSENLGAKFAEVADSAAKHLRHEVLDRLINQELLRQYAQELKLGISDKQVSLAI 120

Query: 107 ---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML--------- 154
                         + +   L   GI  + +  Y+    +   + +              
Sbjct: 121 VNSPMFQNEGKFDNKIYQQILASSGISSDTYAAYVREGLVLEQLQQGIANSDFQVPIQLN 180

Query: 155 ------------------------KYGNLEMEIPANKQKMKNIT---------------- 174
                                   K    E EI    Q  K                   
Sbjct: 181 ELAKNFFQRRDVRLAVLSLDDEMQKQTVTEQEIEQYYQANKANFAVPERVKVQYLDLTRA 240

Query: 175 ---VREYLIRTVLFSIPDNKLQNQGFV---------QKRIKDAEESRLRLPKDCNKLEKF 222
               +  +    +     +                 ++  +    +           + +
Sbjct: 241 IADQKVKISDIEIAQYYQDNKAQYITKHLAHIQLPTEQEAQSVYANLQNGEDFAALAKLY 300

Query: 223 A-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           +   +     G   +++   +   F++ +   +    + P         I + D +    
Sbjct: 301 SMDTLSAPKGGDLDWVVNGMMPLAFESAVTLLNVGEYSQPVKVDNAYHIIKVLDMKTREL 360

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
              ++  ++ +     +        K++   A 
Sbjct: 361 -NDVREEIATKLRNDLVTNAFYSLEKQMNEKAF 392


>gi|229108609|ref|ZP_04238221.1| Foldase protein prsA 1 [Bacillus cereus Rock1-15]
 gi|228674864|gb|EEL30096.1| Foldase protein prsA 1 [Bacillus cereus Rock1-15]
          Length = 286

 Score = 78.9 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 86/304 (28%), Gaps = 45/304 (14%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S +I T+  G+ IT  +   ++          +  K 
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKIVTSKAGD-ITKEEFYNQMKT--------QAGKQ 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +++E +  +  +      D                   + F + L +QGI +   K
Sbjct: 52  VLNNMVMEKVLIKNYKVEDKDVDKKFD--------EMKKQYGDQFDTLLKQQGIKEETIK 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +  Q      ++     K      +       +                         
Sbjct: 104 TGVRAQLAQEKAIEKTITDKELKENYKPEIKASHILVKD--------------------- 142

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              +   K  +E   +        ++++         G   Y     +  +F++   K  
Sbjct: 143 ---EATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGYFTAGKMVKEFEDAAYKLK 199

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE--AEYVKKLRSN 311
           ++  + P  +Q G   I + D ++      +K  +       K +      + + K    
Sbjct: 200 KDEVSEPVKSQFGYHIIKVTDIKEQKPFDEVKGDIKKDLVQKKAQDAAFMNDLMMKEIKK 259

Query: 312 AIIH 315
           A + 
Sbjct: 260 ADVK 263


>gi|317475723|ref|ZP_07934982.1| ppic-type ppiase domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|316908106|gb|EFV29801.1| ppic-type ppiase domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 541

 Score = 78.9 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/307 (10%), Positives = 90/307 (29%), Gaps = 39/307 (12%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
           F  +  F K++     L +  +   + +  +A    +   ING+ +   +        K 
Sbjct: 16  FDFVRFFKKVIMIKSCLAVIFLW--LGWNVFAQQDPVLMRINGKDVLRSEFEYSYNRDKS 73

Query: 66  QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
                 L+   + + +   +                                        
Sbjct: 74  LL---ALKHATLGKYVEYFV-------------------------------NFKLKVGDA 99

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
           +    D  F     +++    +V++                 +        +  +R +  
Sbjct: 100 EAAGLDTAFAFREEVENYRARLVESYLTDTVEADAAARRWYDRMKARHRGGQVRVRHIFK 159

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ 245
            +P N   +         D+    LR     N       +  D       ++    +  +
Sbjct: 160 YLPQNVSSDALRDAVARMDSIHEYLRKNPGDNAFNACVERFSDDK-RSL-WVSWLQMPVE 217

Query: 246 FQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
           F+++  +      + P+ T +G+  + + ++R+L     +K  + A+ +  + ++     
Sbjct: 218 FEDVAFELPVGGVSQPFFTPQGIHIVKVLERRELPPFEKVKDEIMARQSRHEADRGVEVQ 277

Query: 305 VKKLRSN 311
           V+KL+  
Sbjct: 278 VEKLKKE 284


>gi|229173017|ref|ZP_04300568.1| Foldase protein prsA 1 [Bacillus cereus MM3]
 gi|228610350|gb|EEK67621.1| Foldase protein prsA 1 [Bacillus cereus MM3]
          Length = 288

 Score = 78.9 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 30/312 (9%), Positives = 85/312 (27%), Gaps = 48/312 (15%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKIN 69
            + +L      L       +++  +   S  + T  +    +T+ ++SK +         
Sbjct: 2   RYFELKKNKLFLGTIISCVVLALSACGSSDNVVTSKVGN--VTEKELSKELR-------- 51

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
            +  +  + ++++      + + S                     +     S+       
Sbjct: 52  QKYGESTLYQMVLSKALLDKYKVSDEEAKKQVEE-------AKDKMGDNFKSTLEQVGLK 104

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
            ++  K+ +  +  +   +K     K      +       +                   
Sbjct: 105 NEDELKEKMKPEIAFEKAIKATVTEKDVKDNYKPEMKVSHILVKD--------------- 149

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQN 248
                    +K  K+ +E            ++++         G+           +F+ 
Sbjct: 150 ---------EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEE 200

Query: 249 LLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY--- 304
              K      + P  T  G   I + DK++L     +K  +       +++    ++   
Sbjct: 201 AAYKLDAGQVSEPVKTTYGYHIIKVTDKKELKPFDEVKDQIRKDLEQQRLQDTTGKWKQQ 260

Query: 305 -VKKLRSNAIIH 315
            V  L  +A I 
Sbjct: 261 VVNDLLKDADIK 272


>gi|225181417|ref|ZP_03734860.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225167815|gb|EEG76623.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 319

 Score = 78.9 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/305 (8%), Positives = 83/305 (27%), Gaps = 35/305 (11%)

Query: 33  YKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE-----------LEKIAVQELI 81
                 ++     +NGE IT  ++   + +L L     +           +E   +  ++
Sbjct: 25  GCGGNSAANTVANVNGEEITRAELDAYMNVLALFMPELQQMLESEELRGMIEGEILSVMV 84

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
              + +Q  +  G++     +   + +     G  +++    + K+   +    +     
Sbjct: 85  QNVVVEQAAKDLGLSVSDEELQAEYEEFRAMMGGMSDEDFQEVLKEYDINEEDLKQSLRA 144

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
            ++ D ++  F     + +++   ++            +  +LF   +  L+ +  +   
Sbjct: 145 DVYVDKLEQHFASDITDEDIQAFIDENPSFGRQPATLELSHILFDEEEEALEARERILA- 203

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL----------LESDLHPQFQ-NLL 250
                          +   + +      + G   Y            +       +    
Sbjct: 204 ----------GEDFGDLAVELSQDPTAQNEGHPGYRGYLGDNIAEDTQDFWSDFMEGANN 253

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
                  + P  TQ G   I +  +                           +++  + +
Sbjct: 254 ISEDGEVSPPVETQGGWHLIKLHARTPEV--ELSFEEAREDAFVALSVDLMNQHLDGVFA 311

Query: 311 NAIIH 315
            A I 
Sbjct: 312 AAEIE 316


>gi|149194720|ref|ZP_01871815.1| possible periplasmic protein [Caminibacter mediatlanticus TB-2]
 gi|149135143|gb|EDM23624.1| possible periplasmic protein [Caminibacter mediatlanticus TB-2]
          Length = 271

 Score = 78.9 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 94/296 (31%), Gaps = 31/296 (10%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVE 83
              I+  +++ +  +  R+   +NGE IT  DI+K    L +        + A+  LI +
Sbjct: 4   FILILIFLNFVNAKIVDRVVAVVNGEPITSYDITKTFKSLNIS------PREALNILIDQ 57

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            + + EI++ GI  D   +     + A+  G+S  +F ++L  +    N+F + L     
Sbjct: 58  KIIENEIKRRGIEVDDFDIENAIEKIAKQNGMSVFEFKNYLK-ERGEYNNFLKNLKKDIQ 116

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
              +       K      E+     + K         + +      ++  ++    K+  
Sbjct: 117 KQKLFAQIVNSKLKVSNKELKNFYDQNKEKFTT---FKQIEVIEYISQNPDELKHIKKNP 173

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVT 263
               S +++     K  +                                +   T     
Sbjct: 174 LYNSSNIKIENRVFKYNQIPLN-------------------LMFLFNSTKEGEFTPIINN 214

Query: 264 QKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
                   I  K  + +     +K  ++ Q    K      EY   L++ A I  +
Sbjct: 215 GNSYVMFYINKKEGKVILPFEQIKNIIANQLMQQKRNAILKEYFNTLKNQADIEIF 270


>gi|320325365|gb|EFW81432.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 627

 Score = 78.9 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 64/194 (32%), Gaps = 6/194 (3%)

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                     F     +   + ++ K+ F  K    + ++ A  QK       +     +
Sbjct: 215 KAHYDQHAKEFMSPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIANLSEQRRAAHI 274

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL 242
           L     N   N    + +I++ ++   +        ++++         G   Y  +   
Sbjct: 275 LI--EVNDKLNDEQAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKGVY 332

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEK 299
            P F++ L   +++  + P  T  G   I +       +    +LK  L+       +E+
Sbjct: 333 DPAFEDTLYALNKDQVSQPVRTDFGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQ 392

Query: 300 HEAEYVKKLRSNAI 313
              E  K+L  ++ 
Sbjct: 393 KFVEVTKQLEDSSF 406



 Score = 55.8 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/327 (8%), Positives = 78/327 (23%), Gaps = 33/327 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++ +     I +  +   + +    +NGE I+  ++S+ +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDISQNELSQAV 60

Query: 61  ALL-----------------KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            +                          L + A++ LI   L  Q    +  +F    ++
Sbjct: 61  DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSDAALD 120

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE-ME 162
              +Q              F            Q+   Q +  +++             + 
Sbjct: 121 QQLLQTPEFQVDGKFSADRFDQVIRQLGYSRLQF--RQMLGQEMLIGQVRAGVAGSAFVT 178

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                   +            L +           V+       +  +   +      + 
Sbjct: 179 DAQVDAFARLEKQTRDFASLTLPADTTAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIEL 238

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY-IAICDKRDLGGE 281
                        +  +  +  +      +      N    ++     I + DK +    
Sbjct: 239 KKSS---------FFDKVQVKDEDLQAAYQK--EIANLSEQRRAAHILIEVNDKLNDEQA 287

Query: 282 IALKAYLSAQNTP-TKIEKHEAEYVKK 307
            A    +  +            EY + 
Sbjct: 288 KAKIEEIQQRLAKGEDFAALAKEYSQD 314



 Score = 36.2 bits (81), Expect = 6.3,   Method: Composition-based stats.
 Identities = 28/254 (11%), Positives = 66/254 (25%), Gaps = 9/254 (3%)

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             +L      +L+ +   +     +    DS+  +    Q A++ GL  +  + F  + G
Sbjct: 378 KDKLTTDLKSQLVEQKFVEV----TKQLEDSSFESSDLSQPAQDLGLKVQTTAPFGREGG 433

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
            G    +  +        + +             +   + K      +  L         
Sbjct: 434 EGITANRAVIQAAFSPEVLEEGSNSNTLELDPETVVVVRSKEHLQPQQLPLESVASSIRT 493

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS--IGKAQYLLESDLHPQF 246
               ++     K   +A  + LR  K     ++       +       + +    L   F
Sbjct: 494 QLVKEHATAAAKAKGEALLAGLRDGKIPLAAKQDGRDWKSMEAVTRSQEGVDPQVLQTLF 553

Query: 247 QNLLKKSQN--NTTNPYVTQKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEKHEAE 303
           +      +      +          + +             KA           ++  A 
Sbjct: 554 RMPKPDGKGKPEFASITAADGSFVIVRLNGVNQAAAPTDAEKAQYRRFLASRAGQQDFAA 613

Query: 304 YVKKLRSNAIIHYY 317
           Y  +L S A I  +
Sbjct: 614 YRAQLESKAKIEKF 627


>gi|298373303|ref|ZP_06983292.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroidetes oral
           taxon 274 str. F0058]
 gi|298274355|gb|EFI15907.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroidetes oral
           taxon 274 str. F0058]
          Length = 448

 Score = 78.9 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/275 (10%), Positives = 74/275 (26%), Gaps = 16/275 (5%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE---- 71
           +    ++I        +     +   +   +    I   ++ ++  +     +  +    
Sbjct: 1   MKRLTIIITILCSLSAASAQKRVIDGVVWIVGENSILRSEVEEQRQMANYNGVKFDGDPN 60

Query: 72  ---LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
               E+IAVQ+L +       I  +     +        Q+    G   +    F     
Sbjct: 61  CLIAEQIAVQQLFLHQASLDSIVANEGQVSTRVNMQ-INQYIAEIGSQEKLEEYFKKSIN 119

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                  + +  Q +  + V+   +        E+    + MK  ++        +  I 
Sbjct: 120 EIREELFEAIKRQMVVQE-VQQKIIGNNKMSPSEVRKFFESMKPDSIPTMPATVEVQVIR 178

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV-----SIGKAQYLLESDLH 243
                     ++      +   R+ K        A    +        G   +     + 
Sbjct: 179 LEPNITDAQREEVKNRLRDLAERVNKGNADFTMLARLYSEDEGTSKQGGSLGFFGRGMME 238

Query: 244 PQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKR 276
           P+F N+          +    T  G   I + +K+
Sbjct: 239 PEFSNVAFDLHEPGKVSRVVETIYGYHIIQLVEKK 273


>gi|322434836|ref|YP_004217048.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp.
           MP5ACTX9]
 gi|321162563|gb|ADW68268.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp.
           MP5ACTX9]
          Length = 662

 Score = 78.9 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 61/239 (25%), Gaps = 7/239 (2%)

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           + +   +     SG     +               S  D  +F                 
Sbjct: 186 VSDNAVRDSYRVSGTKVKFDYAVITSDTLRATVNPSDSDLQTFFKTNQARYATAVPESRK 245

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
            + +          K    + ++             +   +     I      +      
Sbjct: 246 LNYFAFGADQIPGGKPQVTDADLQTYYNAHLAQYQVKDQAKVRHILIAVPAGADARTDAA 305

Query: 201 RIKDAEESRLRLPK---DCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
               A++   ++       +   K +       + G+  +L      P+F +        
Sbjct: 306 AKAKADDLLKQIKAGGNFADLASKNSDDPGSKANGGELGFLSPGQTVPEFDKASFSLKPG 365

Query: 256 NTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
            T++   T+ G   + + ++++        +KA ++      K    EA Y K L   A
Sbjct: 366 QTSDVIKTKFGYHILQVEERQNAHTKPLNEVKAEITPIVEQQKFGNAEAAYAKSLSDEA 424



 Score = 43.9 bits (101), Expect = 0.033,   Method: Composition-based stats.
 Identities = 15/149 (10%), Positives = 36/149 (24%), Gaps = 8/149 (5%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF--ASKIHDVSIGK 233
             +              +    + +++   +     L        +     K  D+    
Sbjct: 497 PTFDAYKSHILDDYRAEKVPQLLNEKLNKLDARAKELNDLHKAAAELNIPVKSSDLVGKD 556

Query: 234 AQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA--YLSAQ 291
            Q      +          ++   +NP  T      + + DK++   +   K        
Sbjct: 557 GQVPDLGAMSGPGAPAFDLAKGTVSNPINTGSNGIVLVVTDKQEPSADDIAKNFTATREG 616

Query: 292 NTPTKIEKHEAEYVKKLRSNAI----IHY 316
               + E+    Y+  L         I Y
Sbjct: 617 LLNERREEVFRLYLGTLTEKYQKSGGIRY 645



 Score = 38.9 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/279 (11%), Positives = 68/279 (24%), Gaps = 17/279 (6%)

Query: 47  NGEV-ITDGDISKRIALLKLQKINGELEKIAVQELI------VETLKKQEIEKSGITFDS 99
            G+  +TD D+         Q    +  K     LI                K+      
Sbjct: 258 GGKPQVTDADLQTYYNAHLAQYQVKDQAK-VRHILIAVPAGADARTDAAAKAKADDLLKQ 316

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
                 F   A          ++  +   +            S      +   ++K    
Sbjct: 317 IKAGGNFADLASKNSDDPGSKANGGELGFLSPGQTVPEFDKASFSLKPGQTSDVIKTKFG 376

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
              +   +++  +      +   +   +   K  N      +    E  +  + K     
Sbjct: 377 YHILQVEERQNAHTKPLNEVKAEITPIVEQQKFGNAEAAYAKSLSDEARKNGIDKTAAAH 436

Query: 220 EKFASKIHDVSIGKAQYLLESDLHPQF---QNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
              A+      +GK   +                 K  +  +    T  G     + D +
Sbjct: 437 GLHATTTDF--VGKDGVVPGVSDSTALLAQAFTTTKKGDPIS--VSTGDGFAIFQVVDIQ 492

Query: 277 D--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                   A K+++       K+ +   E + KL + A 
Sbjct: 493 APHAPTFDAYKSHILDDYRAEKVPQLLNEKLNKLDARAK 531


>gi|291166314|gb|EFE28360.1| peptidylprolyl isomerase Pr [Filifactor alocis ATCC 35896]
          Length = 365

 Score = 78.9 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/327 (11%), Positives = 100/327 (30%), Gaps = 31/327 (9%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI------- 68
           +  +  +I   +   + +   ++      ++NG+ I      K + L             
Sbjct: 1   MKKWNKVIASVVSATLLFAGCSIGGDAVASVNGQKIGKDVYEKTLGLYSPSYEMQFGPDI 60

Query: 69  -----------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
                      + + ++  ++++I + +  Q+  K  +T     +N  F +  ++   S 
Sbjct: 61  WNTEIESGVTFSQKFQEEILEKMINDEIILQDAAKKELTVSVEEINTQFDELKKS-IDSQ 119

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
           E F S L+  GI D   K+ +                     +       + +   T  +
Sbjct: 120 EQFKSILESNGIDDEFLKEQVKKDMTVKKYYDTLMQENEVKEDEVRKYYDEHIDEFTSSQ 179

Query: 178 YLIRTVLFSIPDNKL------QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVS 230
                +LF+  D         +     ++  +             +   K++       +
Sbjct: 180 VKASHILFAKKDFDKNEELSKEEVAKKKELAEKVLGMAKNGQNFADLAMKYSDDTGSAKN 239

Query: 231 IGKAQYLLESDLHPQFQN-LLKKSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYL 288
            G   Y  ++ +  +F +      Q + ++    T+ G   I + DK++    +     +
Sbjct: 240 GGDLGYFDKNTMVKEFSDAAFSMKQGDISDSIVETEFGFHIIKLFDKKE---NVEKFEDV 296

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                     +     +  L+  A + 
Sbjct: 297 KQSIASNLQYQKYESVIDGLKKAAKVK 323


>gi|217031935|ref|ZP_03437437.1| hypothetical protein HPB128_3g54 [Helicobacter pylori B128]
 gi|298736882|ref|YP_003729412.1| peptidylprolyl isomerase [Helicobacter pylori B8]
 gi|216946404|gb|EEC25009.1| hypothetical protein HPB128_3g54 [Helicobacter pylori B128]
 gi|298356076|emb|CBI66948.1| peptidylprolyl isomerase [Helicobacter pylori B8]
          Length = 299

 Score = 78.9 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/281 (10%), Positives = 76/281 (27%), Gaps = 29/281 (10%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            S+ +  T++G  IT  D    I          +L++   + LI + +            
Sbjct: 40  SSAGVLATVDGRPITKSDFD-MIKQRNPNFDFDKLKEKEKEALIDQAI-------RTALV 91

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
           ++               +        L +                      + + + K  
Sbjct: 92  ENEAKTEKLDSTPEFKAMMEAVKKQALVEFWAKK-----------------QAEEVKKIQ 134

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E E+       K+    +         +       +   +   +   +   +  +  N
Sbjct: 135 IPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEIDKQPKTKKEAKFIELAN 194

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDK 275
           +     +  +  + G      ++ +   F +     +  N T  P  T+ G   I +  K
Sbjct: 195 RDTIDPNSKNAQNGGDLGKFQKNQMALDFSKAAFALTPGNYTKTPVKTEFGYHIIYLISK 254

Query: 276 RDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                      K  +         ++   + +++LR +A I
Sbjct: 255 DSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEELRKHAKI 295


>gi|289679420|ref|ZP_06500310.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
           syringae FF5]
 gi|330897791|gb|EGH29210.1| periplasmic folding chaperone [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330939710|gb|EGH43005.1| periplasmic folding chaperone [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 627

 Score = 78.9 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 63/194 (32%), Gaps = 6/194 (3%)

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                     F     +   + ++ K+ F  K    + ++ A  QK       +     +
Sbjct: 215 KAHYDEHAKEFMSPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQKEIANLSEQRRAAHI 274

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL 242
           L     N   N    + +I++ ++   +        ++++         G   Y  +   
Sbjct: 275 LI--EVNDKLNDEQAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSNKGGDLGYAGKGVY 332

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEK 299
            P F+  L   +++  + P  T  G   I +       +    +LK  L+       +E+
Sbjct: 333 DPAFEEALYALNKDQVSQPVRTDFGWHLIKLLGVEAPSVPTFASLKGKLTNDLKSQLVEQ 392

Query: 300 HEAEYVKKLRSNAI 313
              E  K+L  +A 
Sbjct: 393 KFVEVTKQLEDSAF 406



 Score = 63.2 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/327 (8%), Positives = 81/327 (24%), Gaps = 33/327 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++ +     I +  +   + +    +NGE I+  ++S+ +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIIALMAFTGIEAMFTATSNKQNAAEVNGEDISQNELSQAV 60

Query: 61  ALLK-----------------LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            + +                        L + A++ LI   L  Q    +  +F    ++
Sbjct: 61  DMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADAKFSFSDAALD 120

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE-ME 162
              +Q              F            Q+   Q +  +++             + 
Sbjct: 121 QQLLQTPEFQVDGKFSADRFDQVIRQLGYSRLQF--RQMLGQEMLIGQVRAGVAGSAFVT 178

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
               +   +            L +           V+    +  +  +   +      + 
Sbjct: 179 DAQVEAFARLEKQTRDFASLTLPADTSAVKVTDDEVKAHYDEHAKEFMSPEQVVLDYIEL 238

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY-IAICDKRDLGGE 281
                        +  +  +  +      +      N    ++     I + DK +    
Sbjct: 239 KKSS---------FFDKVQVKDEDLQAAYQK--EIANLSEQRRAAHILIEVNDKLNDEQA 287

Query: 282 IALKAYLSAQNTP-TKIEKHEAEYVKK 307
            A    +  +            EY + 
Sbjct: 288 KAKIEEIQQRLAKGEDFAALAKEYSQD 314



 Score = 37.0 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 29/254 (11%), Positives = 69/254 (27%), Gaps = 9/254 (3%)

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
            G+L      +L+ +   +     +    DS   +    Q A++ GL  +  + F  + G
Sbjct: 378 KGKLTNDLKSQLVEQKFVEV----TKQLEDSAFESSDLSQPAQDLGLKVQTTAPFGREGG 433

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
            G    +  +        + +             +   + K      +  L         
Sbjct: 434 EGLTANRAVIQAAFSPEVLEEGANSNTLELDPETVVVVRSKEHLQPQQLPLESVASSIRA 493

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS--IGKAQYLLESDLHPQF 246
               ++     K   +A  + LR  K     ++       +       + +    L   F
Sbjct: 494 QLVKEHASAAAKAKGEALLAGLRDGKIPLAAKQEGRDWKMMEAVTRSQEGVDPQVLQTLF 553

Query: 247 QNLLKKSQN--NTTNPYVTQKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEKHEAE 303
           +      ++     +   +      + +             KA         + ++  A 
Sbjct: 554 RMPKPTGKDKPEFASITASDGSFVIVRLNGVNQAAAPTDAEKAQYRRFLASREGQQDFAA 613

Query: 304 YVKKLRSNAIIHYY 317
           Y  +L S A I  +
Sbjct: 614 YRAQLESKAKIEKF 627


>gi|94987556|ref|YP_595489.1| parvulin-like peptidyl-prolyl isomerase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731805|emb|CAJ55168.1| Parvulin-like peptidyl-prolyl isomerase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 629

 Score = 78.9 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 54/168 (32%), Gaps = 5/168 (2%)

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ-GFVQKRIKDAEESRLR 211
                +  +     K K    +  +   + ++   P+N         Q++I  A  +  +
Sbjct: 242 NQTIDDTTVSEYYQKHKEDFKSPEQIHAQHIVVFAPENSEPEVLKKAQEKINQAANAIKK 301

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                +  +KF+      + G   +       P F ++    +    + P  T  G   I
Sbjct: 302 GEDFSSVAKKFSQDNVAQNGGDLGWFTYEQAVPAFADVAFSLTPGEISQPIQTPVGYHII 361

Query: 271 AICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + DK+  ++     +   +  +    K      + ++ +   A+I  
Sbjct: 362 KLIDKKPEEIKSFDEVSKTIQQRLAEDKASIELQDVLENV-QLALIEN 408



 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 70/234 (29%), Gaps = 15/234 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + ++   +   +    ++I+F    I +            ++NG+ IT  ++ KR 
Sbjct: 1   MLDFIRSNAQSWGVKIAFGLIIIVFIFWGIGTLSGGPEVE--VVSVNGQSITIQELQKRC 58

Query: 61  ALLKLQKING------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
             ++                   ++++A Q+LI+ETL  QE  + G+      +      
Sbjct: 59  EEIEQNIRQNFPTISAAEINTFRIKQLATQQLILETLVLQEANRIGLIITPIELRKTIES 118

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
                    +   +   +     N    +   Q     ++      +        P    
Sbjct: 119 FPAFHNTEGKFDPAIYLQFLKERNDTPGHFESQIRTNLLIN-KIQQEITAGAYISPTEAY 177

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            +         I+ +LF   D   +      +  K   ES  +         ++
Sbjct: 178 DVYMYESATRTIQYLLFPTEDYLNKVNISADEVAKFYNESSEQFKTPTELNLEY 231


>gi|75764532|ref|ZP_00744003.1| Peptidyl-prolyl cis-trans isomerase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74487981|gb|EAO51726.1| Peptidyl-prolyl cis-trans isomerase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 268

 Score = 78.9 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 81/289 (28%), Gaps = 44/289 (15%)

Query: 31  VSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEI 90
           +S  +   S  I TT +G  I++ D +K++             K  + E++VE +   + 
Sbjct: 5   LSLSACGSSDTIVTTKSGS-ISESDFNKKLK--------ENYGKQNLSEMVVEKVLDDKY 55

Query: 91  EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
           + +                        E      D               Q      +  
Sbjct: 56  KVTDEEVT---------------KQLKELKDKMGDNFNTYMESNGVKNEDQLKEKLKLTF 100

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
            F         E          + V   L++                 +K  K+ +E   
Sbjct: 101 AFEKAIKATVTEKDFKDHYKPKLQVSHILVK----------------DEKTAKEIKEKLN 144

Query: 211 RLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVE 268
                    ++++         G+        +  +F++   K      + P  +  G  
Sbjct: 145 SGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVKEFEDAAYKLEVGQLSEPVKSSFGYH 204

Query: 269 YIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRSNAIIH 315
            I + DK++L      K  +  +    +I+  +   +  + L  NA I 
Sbjct: 205 IIKLTDKKELKPYEEEKENIRKELEQQRIQDPQFHQQVTRDLLKNADIK 253


>gi|311067484|ref|YP_003972407.1| molecular chaperone lipoprotein [Bacillus atrophaeus 1942]
 gi|310868001|gb|ADP31476.1| molecular chaperone lipoprotein [Bacillus atrophaeus 1942]
          Length = 284

 Score = 78.9 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/298 (9%), Positives = 86/298 (28%), Gaps = 41/298 (13%)

Query: 21  VLIIFCIVPIVSYKSWAMSSR-IRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQE 79
            +       I++  + +   + +    +   +T G++   +                + +
Sbjct: 5   AIAAITATSILALSACSSGDKEVIAKTDAGDVTKGELYTNMK--------KTAGASVLTQ 56

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           L+ E +  ++ + +    D     Y      + + L  +    +L               
Sbjct: 57  LVQEKVLAKKYKVTDKEIDKKLKEYKTQLGDQYSALKEQYGEDYL--------------K 102

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
            Q  +  + +          + ++    + +K           +  S      ++     
Sbjct: 103 EQVKYELLTQKAAEDNIKVTDDDVKEYWEGLKGK---------IHTSHILVADKDTAE-- 151

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD---LHPQFQNLLKKSQNN 256
               + E+   +  K  +  +++++     + G   ++ + D        +   K  +  
Sbjct: 152 ----EVEKKLKKGEKFEDLAKEYSTDSSANNGGDLGWISKDDTQLDATFSKAAFKLKKGE 207

Query: 257 TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            ++P  TQ G   I   ++R    ++        +             V+K+   A I
Sbjct: 208 VSDPVKTQFGYHIIKNTEERGKYDDMKKDLKKDVKEQKLSDTSAVQAAVEKVIKKADI 265


>gi|288941221|ref|YP_003443461.1| nitrogen fixation protein NifM [Allochromatium vinosum DSM 180]
 gi|288896593|gb|ADC62429.1| nitrogen fixation protein NifM [Allochromatium vinosum DSM 180]
          Length = 290

 Score = 78.9 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/266 (11%), Positives = 74/266 (27%), Gaps = 14/266 (5%)

Query: 59  RIALLKLQKINGEL---EKIAVQELIVETL----KKQEIEKSGITFDSNTVNYFFVQHAR 111
           R A  + Q     L   ++  V+ L  +T          +++  T          +   R
Sbjct: 22  RAASERFQAPVDALDAAQRTVVERLAEQTWTLESLVLATDEARDTLIPERHLDEALTEVR 81

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
                   F + L + G+ +   +Q L  + I+  V+           E E+     +  
Sbjct: 82  RRYPDEGAFLADLARNGLDETGLRQALRRELIFDAVMTRVGARAEAVSEEEVRRFHAEHP 141

Query: 172 NITV--REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL--PKDCNKLEKFASKIH 227
                      R +L +I  +  +N     +   +A  +  +           + +    
Sbjct: 142 ERFQIPERRAARHILITINADYAENGREAARARIEALAADAQARPDAFGQLARRHSECPT 201

Query: 228 DVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIAL 284
            +  G+   L    L       L        +    ++ G   +                
Sbjct: 202 ALEDGRLGTLPRGRLYPELDAALFALDAGQVSGVLESEIGFHLLWCEHIEPGRTIDFEQA 261

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRS 310
           + ++  +    +    +  ++ +LR 
Sbjct: 262 RPHIRERLQSQRRHDCQKAWIARLRR 287


>gi|228908608|ref|ZP_04072446.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 200]
 gi|228851024|gb|EEM95840.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 200]
          Length = 303

 Score = 78.9 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 85/305 (27%), Gaps = 44/305 (14%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           L     V+    +   +S  +   S  I TT +G  I++ D +K++             K
Sbjct: 24  LKRKKLVIGSILMGMTLSLSACGSSDNIVTTKSGS-ISESDFNKKLK--------ENYGK 74

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             + E++VE +   + + +                        E      D         
Sbjct: 75  QNLSEMVVEKVLNDKYKVTDEEIT---------------KQLKELKDKMGDNFNTYMESN 119

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                 Q      +   F         E          + V   L++             
Sbjct: 120 GVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKNHYKPKLQVSHILVK------------- 166

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK- 252
               +K  K+ +E            ++++         G+        +  +F++   K 
Sbjct: 167 ---DEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVKEFEDAAYKL 223

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
                + P  +  G   I + DK++L      K  +  +    +I+  +   +  + L  
Sbjct: 224 EVGQLSEPVKSSFGYHIIKLTDKKELKPYEEEKENIRKELEQQRIQDPQFHQQVTRDLLK 283

Query: 311 NAIIH 315
           NA I 
Sbjct: 284 NADIK 288


>gi|229121887|ref|ZP_04251106.1| Foldase protein prsA 1 [Bacillus cereus 95/8201]
 gi|228661536|gb|EEL17157.1| Foldase protein prsA 1 [Bacillus cereus 95/8201]
          Length = 288

 Score = 78.9 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/312 (9%), Positives = 86/312 (27%), Gaps = 48/312 (15%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKIN 69
            + +L      L       +++  +   S  + T  +    IT+ ++SK +         
Sbjct: 2   RYFELKKKKLFLGTIISCVVLALSACGSSDNVVTSKVGN--ITEKELSKELR-------- 51

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
            +  +  + ++++      + + S                     +     S+       
Sbjct: 52  QKYGESTLYQMVLSKALLDKYKVSDEEAKKQVEEAKV-------KMGDNFKSTLEQVGLK 104

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
            ++  K+ +  +  +   +K     K      +       +                   
Sbjct: 105 NEDELKEKMKPEIAFEKAIKATVTEKDVKDNYKPEMKVSHILVKD--------------- 149

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQN 248
                    +K  K+ +E            ++++         G+           +F+ 
Sbjct: 150 ---------EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEE 200

Query: 249 LLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY--- 304
              K      + P  T  G   I + DK++L     +K  +       +++    ++   
Sbjct: 201 AAYKLDAGQVSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQ 260

Query: 305 -VKKLRSNAIIH 315
            V +L  +A I 
Sbjct: 261 VVNELLKDADIK 272


>gi|196048054|ref|ZP_03115232.1| foldase protein PrsA [Bacillus cereus 03BB108]
 gi|196021310|gb|EDX60039.1| foldase protein PrsA [Bacillus cereus 03BB108]
          Length = 299

 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/311 (12%), Positives = 95/311 (30%), Gaps = 37/311 (11%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +   +K L    + +    +          S+      +   IT   + + +        
Sbjct: 1   MKIKVKQLLVTGITLTTVSLVGGCSLFDGNSADYAAKTDSGTITKEQLYEHMV------- 53

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             ++ +  + ELI   + +++ + S    D                L AE  ++F D   
Sbjct: 54  -DKVGERTLDELITLKVLEKKYKVSNGEIDDEIKR-----------LKAEFGNTFTDFLA 101

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                 ++ L        + +   +      E ++    Q+ K      +++        
Sbjct: 102 QNGVSNEEQLRDVIKLDKLKQKLALDHIKVKEKDLKDLYQQKKPELRVSHIL-------- 153

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQ 247
                     +++  D +          +  ++F+         G   Y  + D+   FQ
Sbjct: 154 -------VADEQQANDIKGKIDAGEDFGSLAKEFSLDVATKEKGGDIGYFKDGDMLQPFQ 206

Query: 248 NLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK-HEAEYV 305
           +  +K      + P  T  G   I + D++ L     +K  L ++    KI++      +
Sbjct: 207 DAARKLKPGEVSQPVHTDFGYHIIKLIDEKKLPSFEKMKPQLESELITKKIDQSKINAEI 266

Query: 306 KKLRSNAIIHY 316
           +KL     I  
Sbjct: 267 QKLLDKEHIKI 277


>gi|196033913|ref|ZP_03101324.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus W]
 gi|195993593|gb|EDX57550.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus W]
          Length = 283

 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/308 (9%), Positives = 84/308 (27%), Gaps = 48/308 (15%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKINGELE 73
           +      L       +++  +   S  + T  +    IT+ ++SK +          +  
Sbjct: 1   MKKKKLFLGTIISCVVLALSACGSSDNVVTSKVGN--ITEKELSKELR--------QKYG 50

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           +  + ++++      + + S                     +     S+        ++ 
Sbjct: 51  ESTLYQMVLSKALLDKYKVSDEEAKKQVEE-------AKDKMGDNFKSTLEQVGLKNEDE 103

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
            K+ +  +  +   +K     K      +       +                       
Sbjct: 104 LKEKMKPEIAFEKAIKATVTEKDIKDNYKPEMKVSHILVKD------------------- 144

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK 252
                +K  K+ +E            ++++         G+           +F+    K
Sbjct: 145 -----EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYK 199

Query: 253 -SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY----VKK 307
                 + P  T  G   I + DK++L     +K  +       +++    ++    V +
Sbjct: 200 LDAGQVSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNE 259

Query: 308 LRSNAIIH 315
           L  +A I 
Sbjct: 260 LLKDADIK 267


>gi|254249300|ref|ZP_04942620.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia
           PC184]
 gi|124875801|gb|EAY65791.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia
           PC184]
          Length = 410

 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 67/302 (22%), Gaps = 42/302 (13%)

Query: 21  VLIIFCIVPIVSYKSWAMSS-----RIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           V+ + C   + S  +    +      +   +N   I   D+   I     Q     L   
Sbjct: 143 VIALVCATGMTSVVAAEAGTATLPKGVVAVVNNMPIAQSDVD-AIVSASGQADTPALRDA 201

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
             ++LIV  L +Q  +K                   N G   E        +        
Sbjct: 202 VKRDLIVRQLVEQAADK------------------ANYGSRPEVQGIVSRARANAAADLY 243

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
                      +       +  + +++   +                 +           
Sbjct: 244 -----------LRDALGAQRVTDAQVKAHYDYIVANAAQFEYRAEVVAVADPAKANAAAA 292

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN 255
              Q    D    +     +    E    K                  P  Q +      
Sbjct: 293 ELKQGAAFDTVAKKYNTTANGGVAEWSELKTPLAEG-----RTGGLPMPLAQAMTSLKPG 347

Query: 256 NTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             + P        ++ + DKR   +      K  L  Q      +      V KL + A 
Sbjct: 348 AVSGPIRIGNAYAFVKLDDKRPVVVPSFDKAKGVLRQQLEQQARQSAMTALVDKLAAQAT 407

Query: 314 IH 315
           I 
Sbjct: 408 IQ 409


>gi|229184548|ref|ZP_04311751.1| Foldase protein prsA 1 [Bacillus cereus BGSC 6E1]
 gi|228598959|gb|EEK56576.1| Foldase protein prsA 1 [Bacillus cereus BGSC 6E1]
          Length = 288

 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/312 (9%), Positives = 86/312 (27%), Gaps = 48/312 (15%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKIN 69
            + +L      L       +++  +   S  + T  +    IT+ ++SK +         
Sbjct: 2   RYFELKKKKLFLGTIISCVVLALSACGSSDNVVTSKVGN--ITEKELSKELK-------- 51

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
            +  +  + ++++      + + S                     +     S+       
Sbjct: 52  QKYGESTLYQMVLSKALLDKYKVSDEEAKKQVEE-------AKDKMGDNFKSTLEQVGLK 104

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
            ++  K+ +  +  +   +K     K      +       +                   
Sbjct: 105 NEDELKEKMKPEIAFEKAIKATVTEKDVKDNYKPEMKVSHILVKD--------------- 149

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQN 248
                    +K  K+ +E            ++++         G+           +F+ 
Sbjct: 150 ---------EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEE 200

Query: 249 LLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY--- 304
              K      + P  T  G   I + DK++L     +K  +       +++    ++   
Sbjct: 201 AAYKLDAGQVSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQ 260

Query: 305 -VKKLRSNAIIH 315
            V +L  +A I 
Sbjct: 261 VVNELLKDADIK 272


>gi|90021693|ref|YP_527520.1| tRNA pseudouridine synthase [Saccharophagus degradans 2-40]
 gi|89951293|gb|ABD81308.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Saccharophagus
           degradans 2-40]
          Length = 264

 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/239 (7%), Positives = 64/239 (26%), Gaps = 4/239 (1%)

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
              L+ +   +  +    I           +         ++             +    
Sbjct: 27  KSSLVKDEKFEAYLNFKRIPLTDEKRVASALVVYNEREAISKAIEKSDLLDKSLIDVEVA 86

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q +     +           ++   N  + +    + ++   +  +      + + 
Sbjct: 87  EFKKQMLISRYFEAYIKKNVTPEAIKNYYNNNQDEYQNKKIHVAHILFRTNGRMSDEEKN 146

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQF-QNLLKKSQ 254
               + K+A     +  K  +  ++++   +     G   +L E  + P F + +     
Sbjct: 147 ARLLKAKEAHARLQQNEKFEDLAKEYSDDKLSAQKGGDLGWLDEGSIDPVFSRTVFAMDA 206

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
              + P+VT  G   + + +             +         E+ +   + +L+  A 
Sbjct: 207 GAVSEPFVTSYGYHIVKVIE--AAKTTTKPFDAVKGDIAYKLKEQAKQAEMNRLKEQAK 263


>gi|77360982|ref|YP_340557.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (rotamase D)
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76875893|emb|CAI87114.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 633

 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/398 (9%), Positives = 100/398 (25%), Gaps = 96/398 (24%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+       I  +    V++ F +  I SY            +NG  I+  + ++  
Sbjct: 1   MLEKIREGSQGPIAKVILGAVILSFALAGIGSYLGQTTEQP-VAEVNGIKISQTEFNRAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                    ++ +  +  L+ + L+ Q   + G+     +V  
Sbjct: 60  QNERGRLEQQFGEYFTQIAADPNYMAQIRQGVIDRLVQQELQTQLAAELGLRVSDESVRQ 119

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------- 148
                         + + +   + +     + F++YL        +V             
Sbjct: 120 TILELPYFKIGESFNNDRYLQVIRQMNFQPDSFREYLRKDMTRSQLVSAVAGSDFALKNE 179

Query: 149 --------------------KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS-- 186
                               K          E EI    +      +    +        
Sbjct: 180 LESAIALQQQTRSIDYLVVNKEAMQDSVVVSEQEIADYYELNSGQFLSPERLSVNYIELK 239

Query: 187 ----------------IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA------- 223
                             +         +KR             D  K +  +       
Sbjct: 240 AQDITVASVTEDDVKAYYEQSKAQYVEPEKRRVSHILIDNSEDDDAAKAKAESLLAQLNQ 299

Query: 224 -------------SKIHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVE 268
                          +     G  +++    + P F++     +++ + ++   ++ G  
Sbjct: 300 GADFAELAESSSDDIVSGEMGGDLEWIERDVMDPVFEDAAFALENKGDYSDVIASEFGYH 359

Query: 269 YIAICD--KRDLGGEIALKAYLSAQN-TPTKIEKHEAE 303
            I + D   + +     +KA L A+     K++    +
Sbjct: 360 IIKLTDLQAQQVKAYDDVKADLRAELEKAEKVDAFYEK 397


>gi|170736613|ref|YP_001777873.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia MC0-3]
 gi|169818801|gb|ACA93383.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia MC0-3]
          Length = 278

 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 67/302 (22%), Gaps = 42/302 (13%)

Query: 21  VLIIFCIVPIVSYKSWAMSS-----RIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           V+ + C   + S  +    +      +   +N   I   D+   I     Q     L   
Sbjct: 11  VIALVCATGMTSVVAAEAGTATLPKGVVAVVNNMPIAQSDVD-AIVSASGQADTPALRDA 69

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
             ++LIV  L +Q  +K                   N G   E        +        
Sbjct: 70  VKRDLIVRQLVEQAADK------------------ANYGSRPEVQGIVSRARANAAADLY 111

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
                      +       +  + +++   +                 +           
Sbjct: 112 -----------LRDALGAQRVTDAQVKAHYDYIVANAAQFEYRAEVVAVADPAKANAAAA 160

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN 255
              Q    D    +     +    E    K                  P  Q +      
Sbjct: 161 ELKQGAAFDTVAKKYNTTANGGVAEWSELKTPLAEG-----RTGGLPMPLAQAMTSLKPG 215

Query: 256 NTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             + P        ++ + DKR   +      K  L  Q      +      V KL + A 
Sbjct: 216 AVSGPIRIGNAYAFVKLDDKRPVVVPSFDKAKGVLRQQLEQQARQSAMTALVDKLAAQAT 275

Query: 314 IH 315
           I 
Sbjct: 276 IQ 277


>gi|228953196|ref|ZP_04115250.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228806423|gb|EEM52988.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 303

 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 86/305 (28%), Gaps = 44/305 (14%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           L     V+    +   +S  +   S  I TT +G  I++ D +K++             K
Sbjct: 24  LKRKKLVIGSILMGMTLSLSACGSSDNIVTTKSGS-ISESDFNKKLK--------ENYGK 74

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             + E++VE +   + + +                        E      D         
Sbjct: 75  QNLSEMVVEKVLNDKYKVTDEEVT---------------KQLKELKDKMGDNFNTYMESN 119

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                 Q      +   F         E          + V   L++             
Sbjct: 120 GVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYKPKLQVSHILVK------------- 166

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK- 252
               +K  K+ +E            ++++         G+        +  +F++   K 
Sbjct: 167 ---DEKTAKEIKEKLNSGEDFAAVAKQYSEDPGSKEKGGELSEFGPGMMVKEFEDAAYKL 223

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
                + P  +  G   I + DK++L      K  +  +    +I+  +   +  ++L  
Sbjct: 224 EVGQLSEPVKSSFGYHIIKLTDKKELKPYEEEKENIRKELEQQRIQDPQFHQQVTRELLK 283

Query: 311 NAIIH 315
           NA I 
Sbjct: 284 NADIK 288


>gi|30262343|ref|NP_844720.1| peptidylprolyl isomerase [Bacillus anthracis str. Ames]
 gi|47778036|ref|YP_018981.2| peptidylprolyl isomerase [Bacillus anthracis str. 'Ames Ancestor']
 gi|30256974|gb|AAP26206.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. Ames]
 gi|47551741|gb|AAT31456.2| peptidylprolyl isomerase PrsA [Bacillus anthracis str. 'Ames
           Ancestor']
          Length = 298

 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/312 (9%), Positives = 86/312 (27%), Gaps = 48/312 (15%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKIN 69
            + +L      L       +++  +   S  + T  +    IT+ ++SK +         
Sbjct: 12  RYFELKKKKLFLGTIISCVVLALSACGSSDNVVTSKVGN--ITEKELSKELR-------- 61

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
            +  +  + ++++      + + S                     +     S+       
Sbjct: 62  QKYGESTLYQMVLSKALLDKYKVSDEEAKKQVEE-------AKDKMGDNFKSTLEQVGLK 114

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
            ++  K+ +  +  +   +K     K      +       +                   
Sbjct: 115 NEDELKEKMKPEIAFEKAIKATVTEKDVKDNYKPEMKVSHILVKD--------------- 159

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQN 248
                    +K  K+ +E            ++++         G+           +F+ 
Sbjct: 160 ---------EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEE 210

Query: 249 LLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY--- 304
              K      + P  T  G   I + DK++L     +K  +       +++    ++   
Sbjct: 211 AAYKLDAGQVSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQ 270

Query: 305 -VKKLRSNAIIH 315
            V +L  +A I 
Sbjct: 271 VVNELLKDADIK 282


>gi|227484925|ref|ZP_03915241.1| possible peptidylprolyl isomerase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227237080|gb|EEI87095.1| possible peptidylprolyl isomerase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 248

 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/285 (11%), Positives = 86/285 (30%), Gaps = 45/285 (15%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLK--LQKINGELEKIAVQELIVETLKKQEIEKSGI 95
            ++++   +NG+ I   D+   +  ++   +  N E  K+   E++ + +   +  K+ +
Sbjct: 3   NNNKLLAEVNGKKIYRNDVISFMHNIEGGARFQNEEGIKVLADEMVNQEIILADAYKNKL 62

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
             +    N                                  L   ++  +   +     
Sbjct: 63  DDEDEFKNEL-------------------------------KLVKDNMLKNYAMHKIFEA 91

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
               + ++    +  K +             + D    N+ + + ++             
Sbjct: 92  VNPTDDDLKKYYEDNKELISPNKTYTASHILVDDIDKANKIYEEIKL---------GLDF 142

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICD 274
               +K++      S G      +  +  +FQ+ L        + P  +Q G   I + D
Sbjct: 143 KEAAKKYSKDPSAASGGSLGTFPKGVMVKEFQDGLDSLEIGEISKPVKSQFGYHIIKLED 202

Query: 275 K--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
               +      +K  +       K ++   E +K++  NA +  Y
Sbjct: 203 IQNEEPKAFDEVKEQVYQTYLMVKRQEKYLEKLKEISKNAEVKKY 247


>gi|70731342|ref|YP_261083.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas fluorescens
           Pf-5]
 gi|68345641|gb|AAY93247.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas fluorescens
           Pf-5]
          Length = 623

 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/268 (11%), Positives = 84/268 (31%), Gaps = 10/268 (3%)

Query: 54  GDISKRIALLKLQKINGELEKIAVQE----LIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
             + +++   +LQ      +++ + +    L            +    +  T ++  +  
Sbjct: 137 DQVIRQLGYTRLQFRQMLTQEMLIGQVRAGLAGSGFVTDAQVLAFARLEKQTRDFASLTI 196

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
             +                     F     +   + ++ K  F  +    + ++ A  QK
Sbjct: 197 KADPAAVKLTDDEVKAYYDQHAKEFMTPDQVVIDYIELKKAAFFDQVSVKDEDLQALYQK 256

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HD 228
                  +     +L     N   N+   + +I++ +    +        ++F+      
Sbjct: 257 EIANLSEQRRAAHILI--EVNDKVNEAQAKAKIEEIQARLAKGESFEALAKEFSQDPGSA 314

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALK 285
            + G   +       P F+  L   +++  + P  T  G   I +      ++    +LK
Sbjct: 315 SNGGDLGFAGPGVYDPTFEKALYALNKDQVSAPVRTGFGFHLIKLLGVEAPEVPSFASLK 374

Query: 286 AYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             L+      ++E+   E  K+L  ++ 
Sbjct: 375 GKLTRDLKTQQVEQRFVEATKQLEDSSF 402



 Score = 70.1 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/321 (9%), Positives = 82/321 (25%), Gaps = 26/321 (8%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++ +  +    +       ++    +NGE IT  ++S+ +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGVIVALLALTGFDAIFKATTHNQDAAKVNGEEITQNELSQAV 60

Query: 61  ALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
            + + Q +                L + A++ LI   L  Q  + S   F    ++   +
Sbjct: 61  DMQRRQLMQQLGKDFDASLLDEKMLREAALKGLIDRKLLLQGAQDSKFAFSEGALDQVIL 120

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
           Q              F                       ++        G+  +      
Sbjct: 121 QTPEFQVDGKFSPERFDQVIRQLGYTR-LQFRQMLTQEMLIGQVRAGLAGSGFVTDAQVL 179

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
              +            + + P         V+       +  +   +      +      
Sbjct: 180 AFARLEKQTRDFASLTIKADPAAVKLTDDEVKAYYDQHAKEFMTPDQVVIDYIELKKAAF 239

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY-IAICDKRDLGGEIALKA 286
                         +  + ++L    Q    N    ++     I + DK +     A   
Sbjct: 240 F-----------DQVSVKDEDLQALYQKEIANLSEQRRAAHILIEVNDKVNEAQAKAKIE 288

Query: 287 YLSAQNTPTKIEKHEAEYVKK 307
            + A+    +  +  A+   +
Sbjct: 289 EIQARLAKGESFEALAKEFSQ 309


>gi|320334162|ref|YP_004170873.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
           maricopensis DSM 21211]
 gi|319755451|gb|ADV67208.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
           maricopensis DSM 21211]
          Length = 331

 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 78/293 (26%), Gaps = 27/293 (9%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGE--------------LEKIAVQELIVETL 85
             +   I  + +T  D          Q +N +                   ++++  +  
Sbjct: 40  QTVVARIGTQTLTLADFESAYRQAVAQVVNAQGVPLSADVLPYFVQYRPEILEQVARQRA 99

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
             Q    SG+  D+  V+       +     A+   +      + +   +Q +A   ++ 
Sbjct: 100 VLQLAANSGLKVDTAKVDQSIEDLRKEYPADADYTDALEGSGYVSEAALRQSIADAQLYR 159

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
             +      K+   +  +       K    R          + D+        +      
Sbjct: 160 AYLDT-IRGKFKFSDSVVNGYYLSHKADFTRPAEACAKHILLKDDATARTVAAR------ 212

Query: 206 EESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQ 264
                +         + +         G    L   D  P+F   + K   NT     TQ
Sbjct: 213 ---LSKGEDFAKVAAEVSEDPGSKGQGGDLGCLAPGDTVPEFDAAVFKGPLNTVQTVKTQ 269

Query: 265 KGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            G   + +  + D G   A  A  + Q   T   +   +Y+        +  +
Sbjct: 270 FGTHLVVVTKRTDAGL--APLAEAADQIRDTLANEAAQKYINAQLVKVKVEVF 320


>gi|312860326|gb|ADR10202.1| PpiC-type peptidyl-prolyl cis-trans isomerase [bacterium enrichment
           culture clone F5-11]
          Length = 290

 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/283 (8%), Positives = 73/283 (25%), Gaps = 38/283 (13%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
             +    T+NG  I  G     + + + +K +                  +   ++    
Sbjct: 39  SGNEPVATVNGRPIPRGVFEVMLGVTRQEKASEA----------------EATGQTAQPE 82

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
            +   +   +          ++ +           H         I    +  +   K  
Sbjct: 83  LTEADHQAILDRLITLEAVVQEAAKQGFGTDDAFLHELALQRDTLIAQRFL-AEASKKIE 141

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             +  I     ++                   +  Q     +   +              
Sbjct: 142 IDDAAIAEYYAQLPKHFE-------------YDLRQIVTADEASARAVIAKLKDGADFAQ 188

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTN-PYVTQKGVEYIAICDK 275
              + +      + G   +L+   L     + ++       T+ P  T +G   + +   
Sbjct: 189 LASEMSQAPEAANGGSLGWLMAEQLPTTIADAVRAMQAGTFTDQPLQTPQGWHVVRVEGV 248

Query: 276 R--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           R  +       +A++  +    KI++     + ++R++A +  
Sbjct: 249 RQLEQVPLETARAWIEGELRNQKIQQ----MIDQMRASAKVEI 287


>gi|113867510|ref|YP_725999.1| peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16]
 gi|113526286|emb|CAJ92631.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16]
          Length = 644

 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/281 (10%), Positives = 61/281 (21%), Gaps = 31/281 (11%)

Query: 52  TDGDISKRIALLKLQKINGE-------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           T      R+      +  G        + K  +  LI    ++++++             
Sbjct: 150 TPEQFDARMRFELATQQLGASVAATAFVPKSLLDRLIAVRDQQRDVQALLF--KPAGYTA 207

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
                A       +               +             V             E+ 
Sbjct: 208 KVQPDAAALKAYYDSHQQAFSVPEQAKVEYLLLSGEALAATQAV----------TPEELK 257

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
           +           +   R     I   K       Q     A +    L K  +     A 
Sbjct: 258 SYYDSNIARFRIDEQRRASHILISAPKDAPAAQRQAAKDKATKLLEDLRKHPDTFADVAR 317

Query: 225 KIH-----DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL 278
           K           G   ++    L   F++ +        ++   T  G   I +   +  
Sbjct: 318 KNSQDPGSAEKGGDLGFMGRGALVKPFEDAMYALKDGQVSDVVETDYGYHIIKLTGIKPA 377

Query: 279 GGE------IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             +        L+A L  Q    K  +    +   +   A 
Sbjct: 378 ETKPLEAVRTELEAELRKQFADKKFAEQADAFGNTVYEQAD 418



 Score = 49.3 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 43/145 (29%), Gaps = 21/145 (14%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA-------------LLKLQKING 70
            F    + SY  +  SS     ++G  I+  +I   +                  Q    
Sbjct: 23  SFVFFGVESYSRFMDSSHDAAKVDGRAISVQEIDNVVRDQSERARQVLGASYDPRQFEGP 82

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV--------QHARNTGLSAEDFSS 122
           +  K  + +LI++ +    + +  +T     +                ++  +  + +  
Sbjct: 83  DARKAVLDQLILQRVMASAVAREHLTVSDAKLLEEISNLPAIAQLPRTKDGKVDDKAYLQ 142

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDV 147
            L  QG+    F   +  +     +
Sbjct: 143 LLQSQGMTPEQFDARMRFELATQQL 167


>gi|308270798|emb|CBX27408.1| hypothetical protein N47_H22300 [uncultured Desulfobacterium sp.]
          Length = 632

 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/256 (10%), Positives = 71/256 (27%), Gaps = 16/256 (6%)

Query: 69  NGELEKIAVQELIVETLK----------KQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
             E E    + LI+E L             E  +      ++    +             
Sbjct: 145 PDEFEATVRESLIMERLISFITSSVKVSDNEALEWFNWKGASVNVDYVFFTPDKYNGINP 204

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
                 +        ++    ++  +     + F+ +    + E+    +   +      
Sbjct: 205 SQKELNEYFDKNKESYRTEKKVKVAYLLFSPDSFITQVKVDDNEVKEYYENNIDKFTNPE 264

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAE---ESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
            +         ++  N   VQ   + A+   +            +K++        G   
Sbjct: 265 TVEASHILCKIDEGANPAAVQAAKQKADNVFKMIKEGQPFEELAKKYSDCPSKADGGHLG 324

Query: 236 YLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAIC--DKRDLGGEIALKAYLSAQN 292
              + D+   F +      Q   + P +T+ G   I +   +K  +      ++ +  + 
Sbjct: 325 AFGKKDMVEPFASKAFSMKQGEISEPVLTKFGWHIIKVEKVNKEKMLVLKEAESEIRKKL 384

Query: 293 TPTKIEKHEAEYVKKL 308
              K +K   +  +K+
Sbjct: 385 ISEKAKKLAYDEAEKI 400



 Score = 49.7 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/291 (11%), Positives = 82/291 (28%), Gaps = 11/291 (3%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
             S K   +S  + T     +I    ++K   +L L++   E+ K    +LI E  KK  
Sbjct: 339 AFSMKQGEISEPVLTKFGWHIIKVEKVNKE-KMLVLKEAESEIRK----KLISEKAKKLA 393

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
            +++    D        ++ +  +G+  +    F  K             +++   ++  
Sbjct: 394 YDEAEKICDLAINMNDLIKASEKSGVKIKTTDFFSKKDASAAAGADNQALMEAGVFEMSD 453

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
            +             A    +    +               K       +K  +    + 
Sbjct: 454 KEISDVKEIGNRYCVAEVTDIMLPKIPVLKDVAETVKSDVIKEMQWEKAKKDAEVLLSAL 513

Query: 210 LRLPKDCNKLEKFASKIHDV----SIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQK 265
                   +  K+    H+       G    +       +    L         P   + 
Sbjct: 514 KTGKDFTQESLKYGLTPHETGFFARSGPVGSIGYEPQLSEAAFKLSDDNKYAETPVKGKN 573

Query: 266 GVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           G   +   ++           K  +       K E   + +++K++S++ I
Sbjct: 574 GYYIMRFKERENPPEQDFDKEKERIVKALLEQKKENTFSSWLEKIKSSSEI 624



 Score = 49.3 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 70/239 (29%), Gaps = 18/239 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   ++  +     +I+   V        +  +     +NGEVIT  +  +  
Sbjct: 1   MLDFMRKNAGSWM--IKAILGIIVVVFVFWGVGSFRSNRANRVAKVNGEVITVREYQEAY 58

Query: 61  ALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
             L  Q                   +K A+ +LIV+ L  QE +K       + +     
Sbjct: 59  NNLVEQIRAKLGTNYNEETLKAFNFKKKALDDLIVKKLLVQEAKKLKFRVTDDELVKLIG 118

Query: 108 QHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
                      + +++   L +     + F+  +    I   ++         +    + 
Sbjct: 119 SIKAFQVDGVFNKKEYERVLSRNHTVPDEFEATVRESLIMERLISFITSSVKVSDNEALE 178

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
               K  ++ V         ++  +   +       + K++  +  ++          +
Sbjct: 179 WFNWKGASVNVDYVFFTPDKYNGINPSQKELNEYFDKNKESYRTEKKVKVAYLLFSPDS 237


>gi|46579478|ref|YP_010286.1| peptidyl-prolyl cis-trans isomerse domain-containing protein
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|120602972|ref|YP_967372.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           vulgaris DP4]
 gi|46448892|gb|AAS95545.1| peptidyl-prolyl cis-trans isomerse domain protein [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120563201|gb|ABM28945.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           vulgaris DP4]
 gi|311233293|gb|ADP86147.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           vulgaris RCH1]
          Length = 629

 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 15/142 (10%), Positives = 41/142 (28%), Gaps = 4/142 (2%)

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQG-FVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
              +       R +L  +P+   +      ++RI DA               K +     
Sbjct: 260 SYFMQPERVRARHILVRVPEGADEATVRKAEERIADAAAQIKAGKDFAAVAAKVSEDGSA 319

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAIC--DKRDLGGEIALK 285
            + G+  +    ++   F++          + P  +Q G   I     + +       ++
Sbjct: 320 RNGGELGWFGRGEMVKPFEDAAFGLKPGEVSAPVRSQFGFHLIKSEGHEAQRQKALDEVR 379

Query: 286 AYLSAQNTPTKIEKHEAEYVKK 307
             +  +    K  +   + +  
Sbjct: 380 NEIRKRLAEEKAIEKVHDSLDN 401



 Score = 58.9 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 57/194 (29%), Gaps = 19/194 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +      +   +    ++++F    + S       + +  T+N + I   D  +  
Sbjct: 1   MLDVIRGHAQSWGVKVAFGLIIVVFVFWGVGSM--QEGPTSVVATVNKKPIVIRDFIREY 58

Query: 61  ALLKLQ------------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
                                  L++  +Q+++ ETL +QE E+ GIT     +     Q
Sbjct: 59  ERQVESLRTRFPGVTADELKKLGLKRQVLQQMVAETLMQQEAERLGITVTPYELRAAIDQ 118

Query: 109 HARNT----GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
                        E +   L  Q      F++ +    +    ++          + E  
Sbjct: 119 IPAFRDASGKFDPETYKKVLKAQQTVPGRFEEGVRKDMLGRK-MRALVTAGAVVTDAEAR 177

Query: 165 ANKQKMKNITVREY 178
                 +     +Y
Sbjct: 178 DMFTYAQEKRSIDY 191


>gi|229190961|ref|ZP_04317951.1| Foldase protein prsA 1 [Bacillus cereus ATCC 10876]
 gi|228592359|gb|EEK50188.1| Foldase protein prsA 1 [Bacillus cereus ATCC 10876]
          Length = 303

 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 85/305 (27%), Gaps = 44/305 (14%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           L     V+    +   +S  +   S  I TT +G  I++ D +K+              K
Sbjct: 24  LKRKKLVIGSILMGMTLSLSACGSSDNIVTTKSGS-ISESDFNKKFK--------ENYGK 74

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             + E++VE +   + + +                        E      D         
Sbjct: 75  QNLSEMVVEKVLNDKYKVTDEEVT---------------KQLKELKDKMGDNFNTYMESN 119

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                 Q      +   F         E          + V   L++             
Sbjct: 120 GVKNEDQLKEKLKLTFAFEKAIKATVTEKDIKDHYKPKLQVSHILVK------------- 166

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK- 252
               +K  K+ +E            ++++         G+        +  +F++   K 
Sbjct: 167 ---DEKTAKEIKEKLNSGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVKEFEDAAYKL 223

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
                + P  +  G   I + DK++L      K  +  +    +I+  +   +  ++L  
Sbjct: 224 EVGQLSEPVKSSFGYHIIKLTDKKELKPYEEEKENIRKELEQQRIQDPQFHQQVTRELLK 283

Query: 311 NAIIH 315
           NA I 
Sbjct: 284 NADIK 288


>gi|299537572|ref|ZP_07050865.1| foldase protein prsA 1 precursor [Lysinibacillus fusiformis ZC1]
 gi|298726941|gb|EFI67523.1| foldase protein prsA 1 precursor [Lysinibacillus fusiformis ZC1]
          Length = 326

 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/312 (11%), Positives = 84/312 (26%), Gaps = 49/312 (15%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKINGELE 73
           +  T   L +   V  +   S   S  I T  +    I+  D +++   L          
Sbjct: 1   MKKTVLSLTLAASVLALGACSGGDSKAIVTSKVGD--ISVADFNEKAKALTGSY------ 52

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
              +Q+++ E +   + E +                   T   AE   +           
Sbjct: 53  --VMQQMVTEKVLADKYEVTDKEIKEAYDTTASQFGDGFTQALAESGLTEQGF------- 103

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                   S+   +++   +      E ++                          N   
Sbjct: 104 ------KDSLRVQLLQEKALKDQAIKEEDVKKYY---------------EQMKTELNGRH 142

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK 252
                +K  K+  E      K  +  +++++        G+  +     +  +F +    
Sbjct: 143 ILVADEKTAKEVIEKIKGGAKFEDVAKEYSTDTGSAQKGGELGWFSVGSMVDEFNDAAYA 202

Query: 253 -SQNNTTNPYVTQKGVEYIAICDKRDLG---GEIALKAYLSAQNTPTK-----IEKHEAE 303
              N  + P  +  G   I I DKRD+         +  + +            +    +
Sbjct: 203 LELNTLSEPVKSSFGYHVIEITDKRDVKGVGSFKDEEENIRSTMLNKLNQTGEAQTILKD 262

Query: 304 YVKKLRSNAIIH 315
            V K+  +A + 
Sbjct: 263 IVAKMAKDADVK 274


>gi|228914927|ref|ZP_04078532.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228927396|ref|ZP_04090453.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228933628|ref|ZP_04096478.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228826088|gb|EEM71871.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228832292|gb|EEM77872.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228844723|gb|EEM89769.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 288

 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/312 (9%), Positives = 86/312 (27%), Gaps = 48/312 (15%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKIN 69
            + +L      L       +++  +   S  + T  +    IT+ ++SK +         
Sbjct: 2   RYFELKKKKLFLGTIISCVVLALSACGSSDNVVTSKVGN--ITEKELSKELR-------- 51

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
            +  +  + ++++      + + S                     +     S+       
Sbjct: 52  QKYGESTLYQMVLSKALLDKYKVSDEEAKKQVEE-------AKDKMGDNFKSTLEQVGLK 104

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
            ++  K+ +  +  +   +K     K      +       +                   
Sbjct: 105 NEDELKEKMKPEIAFEKAIKATVTEKDVKDNYKPEMKVSHILVKD--------------- 149

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQN 248
                    +K  K+ +E            ++++         G+           +F+ 
Sbjct: 150 ---------EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEE 200

Query: 249 LLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY--- 304
              K      + P  T  G   I + DK++L     +K  +       +++    ++   
Sbjct: 201 AAYKLDAGQVSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQ 260

Query: 305 -VKKLRSNAIIH 315
            V +L  +A I 
Sbjct: 261 VVNELLKDADIK 272


>gi|301060821|ref|ZP_07201635.1| PPIC-type PPIASE domain protein [delta proteobacterium NaphS2]
 gi|300445070|gb|EFK09021.1| PPIC-type PPIASE domain protein [delta proteobacterium NaphS2]
          Length = 635

 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 74/236 (31%), Gaps = 6/236 (2%)

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           K  +   +  T ++     +            F        ++ ED +   +        
Sbjct: 163 KQFLFAFLNITDQEILEYYTFANEKVKIGFVEFKPEDFKKSVTIEDKAKLKEYFEKNKES 222

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
           ++    I   + ++   DF  +    E EI +  +   +   +   ++        NK  
Sbjct: 223 YRVPEKIAVRYLEIDPKDFEGEVEVTEKEIQSYYEYNSDRYSQPKQVKARHILFKFNKDD 282

Query: 194 NQG---FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL 250
           ++     V+K+ +   E   +     +  +K++        G   Y    ++   F+   
Sbjct: 283 SEEVKNTVKKKAEKVLEKARKGEDFASLAKKYSEGPTKSKGGDLGYFKTGEMEKPFEEAA 342

Query: 251 KK-SQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAE 303
               +   ++   T+ G   I + D ++ G +    +K  + A  T     +   E
Sbjct: 343 FALKKGEISDLVQTRFGYHIILVEDIKEAGIKPLENVKGEIRATLTGNLTAELAHE 398



 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/298 (9%), Positives = 75/298 (25%), Gaps = 25/298 (8%)

Query: 26  CIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-------------EL 72
             V    Y   +  +     +NGE+I   +  K    + +                   L
Sbjct: 25  VFVFYFGYSFTSDKAMKVAYVNGELINGPEYEKAYRDMLMSFQARYKDMWNDNLLKIFNL 84

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD---KQGI 129
           ++ A+  LI + L  Q   + G+      +    + +         D   +        +
Sbjct: 85  KQRALDSLITQRLMSQAATELGLAVTEEEIQKAIMTYPAFQINGQFDMRRYQALLSANHM 144

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
               F+  +  + +   + +  F       +  +       + + +     +        
Sbjct: 145 KPEDFEASITSELLDQKLKQFLFAFLNITDQEILEYYTFANEKVKIGFVEFKPE----DF 200

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
            K        K  +  E+++           ++         G+           + Q+ 
Sbjct: 201 KKSVTIEDKAKLKEYFEKNKESYRVPEKIAVRYLEIDPKDFEGEV-----EVTEKEIQSY 255

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
            + + +  + P   +                +  +K          +  +  A   KK
Sbjct: 256 YEYNSDRYSQPKQVKARHILFKFNKDDSEEVKNTVKKKAEKVLEKARKGEDFASLAKK 313


>gi|315586175|gb|ADU40556.1| peptidyl-prolyl cis-trans isomerase [Helicobacter pylori 35A]
          Length = 299

 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 82/281 (29%), Gaps = 29/281 (10%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            S+ +  T++G +IT  D    I          +L++   + LI + ++   +E    T 
Sbjct: 40  SSAGVLATVDGRLITKSDFD-MIKQRNPNFDFDKLKEKEKEALIEQAIRTALVENEAKT- 97

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                             + E  +     +      F              + + + K  
Sbjct: 98  -------------EKLDQTPEFKAMMEAVKKQALVEFWAKK----------QAEEVKKIQ 134

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E E+       K+    +         +       +   +   +   +   +  +  N
Sbjct: 135 IPEKEMQDFYNANKDQLFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELAN 194

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDK 275
           +     +  +  + G      ++ + P F +     +  + T  P  T+ G   I +  K
Sbjct: 195 RDTIDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGDYTKTPVKTEFGYHIIYLISK 254

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                      K  +         ++   + +++LR +A I
Sbjct: 255 DSPVTYTYDQAKPTIKGMLQEKLFQERMNQKIEELRKHAKI 295


>gi|303234820|ref|ZP_07321445.1| PPIC-type PPIASE domain protein [Finegoldia magna BVS033A4]
 gi|302493938|gb|EFL53719.1| PPIC-type PPIASE domain protein [Finegoldia magna BVS033A4]
          Length = 321

 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/323 (11%), Positives = 87/323 (26%), Gaps = 24/323 (7%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN------- 69
              F+ I+  ++ ++        +     I  E I   D+ K +   K            
Sbjct: 1   MKKFLAIVLAMMMVMVTACSNKPNGAVAKIGKEYIYQKDVDKVMEDYKQYYGQDIFNPNT 60

Query: 70  -------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
                   +++   +  LI E +  + ++   I      V     +  +  G + +    
Sbjct: 61  EQGKEALKQIKPKIIDMLINEKIANKLMKDKKIEVSDKEVQAEVDKLQKQLGGADKFKEQ 120

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
              +        +Q      +    +   F   +   + EI     K  +   +      
Sbjct: 121 LKKENMTEQALKEQIEKQ--LKNKKLSQQFEKDFKPSDKEIKDEFDKNIDTYTQYNADHI 178

Query: 183 VLFSIPDNKLQNQGFVQKRIKD----AEESRLRLPKDCNKLEKFASKIHD-VSIGKAQYL 237
           +                K   +      E            +  +       + GK    
Sbjct: 179 LFSGKDAKGKNLDASKLKAKSELADKTYEEVKDGKNFNEVAKAKSEDPSAKQNSGKLGDF 238

Query: 238 LESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTP 294
           L S +  +F +   K      + P  T+ G   I +  K     +   A K  +    + 
Sbjct: 239 LSSTMVKEFSDALKKMKPGEVSKPVKTEFGYHIIKLNSKVTELDKMTDANKQNIKTAISN 298

Query: 295 TKIEKHEAEYVKKLRSNAIIHYY 317
             I++   +  +K + +  +  Y
Sbjct: 299 KIIQEKVQKEFEKQKKDLGVKIY 321


>gi|297374635|emb|CBL42922.1| PpiC-type peptidyl-prolyl cistrans isomerase [Candidatus
           Magnetobacterium bavaricum]
          Length = 323

 Score = 78.6 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 74/278 (26%), Gaps = 38/278 (13%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              +  E IT   + + +A L          K  ++ L+ E                   
Sbjct: 36  IVKLGQETITSEQLQEELAKLPPNIKAMFTGKDGLKRLVDEV------------------ 77

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                   +   L  E     LDK         ++  I  I   + KN           E
Sbjct: 78  -------KKREVLYLEAKKVGLDKDPEFTKKITEFKKINLINTLIQKNVQAKNVTVTPEE 130

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                 + +   V    +R V               ++  KD  +   +        +  
Sbjct: 131 AKKYYDENQKEFVMPEQVRAVHIL---------VKTEQEAKDLYDKLKKGGDFAATAKSV 181

Query: 223 A-SKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG- 279
           +         G   +     + P F + + K  +   + P  T  G   I + D ++   
Sbjct: 182 SMDTATAEKGGDLDFFSRGQMEPSFDEAVFKLKKGELSTPVKTSFGYHIIKVVDNKEAKT 241

Query: 280 -GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
               ++K  +    T  K +K    Y   +  N  ++ 
Sbjct: 242 TDFESVKPMIIQYLTGEKQKKTFDTYYSSVEKNYNVNI 279


>gi|90424481|ref|YP_532851.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB18]
 gi|90106495|gb|ABD88532.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB18]
          Length = 346

 Score = 78.2 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/286 (10%), Positives = 74/286 (25%), Gaps = 32/286 (11%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKS 93
            S A    I   I    IT  ++   I+ L  ++                          
Sbjct: 61  SSVAKGGEIVARIGENDITAEEVRAAISFLDARQQAALAR-------------------- 100

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
               D   ++        N     E  +   D+Q +      +    Q +   +      
Sbjct: 101 ----DPAQLSQTVRAILANRLALKEALAKKWDQQPVIVAQLARVRESQIVESYLQSLTTP 156

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
            +    E EI A      +  +     +     +   K  ++       K  ++   +  
Sbjct: 157 PESYPNESEIKAVYDANASALMVPRRFQLAQIVVAVAKDADKAAEDAGRKKLDDVLKKAK 216

Query: 214 KDCNKLEKFASKIH-----DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGV 267
                    A  +          G+  +  E DL  + ++ +   ++   + P     G 
Sbjct: 217 APGADFAALARSVSDDAATAERDGEIGWAAEPDLKTEIRSQIVGLAKGAISEPVRLDDGW 276

Query: 268 EYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             + + D           ++  L  +    + + +   Y+ +L   
Sbjct: 277 HILKLLDTEASRLRSLSEVRDALVQRIRAERADANRRAYMAELLKQ 322


>gi|51244848|ref|YP_064732.1| peptidyl-prolyl cis-trans isomerase D [Desulfotalea psychrophila
           LSv54]
 gi|50875885|emb|CAG35725.1| related to peptidyl-prolyl cis-trans isomerase D [Desulfotalea
           psychrophila LSv54]
          Length = 634

 Score = 78.2 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/267 (10%), Positives = 62/267 (23%), Gaps = 14/267 (5%)

Query: 59  RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
               L   K    +    + E     + +     S    +                 S +
Sbjct: 143 AANRLSPSKFEANIRHDMLAEKTARAINEFSAHASDFEIEEFYGQANEGVSVDFASFSPK 202

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQ--------SIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
           DFSS +  +      + +               +          K    E  I    Q  
Sbjct: 203 DFSSQVSVEEPALAQWFKEAKDNYKKSPEVKLTYLAYDYATIQEKISLDEAAINNYYQSH 262

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL---PKDCNKLEKFASKIH 227
            N                 +   +    Q ++K AE    +            +F+    
Sbjct: 263 LNTFRLAEKRHARHILFVVSPGDSDEKQQAQLKKAENVLKKAQADEDFAQLARQFSEGPS 322

Query: 228 DVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA 286
               G   +   +++  P    +      + +    T  G   I +   ++   +     
Sbjct: 323 KSEGGDLGFFARAEMIPPFADAVFTLKNGDISGIVKTNFGYHIIKLEGIQEAKTKS--LD 380

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            +  Q   +  +        +L +NA 
Sbjct: 381 KVREQIALSLQQDQAKALAFQLANNAY 407



 Score = 40.8 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 45/157 (28%), Gaps = 18/157 (11%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-------------ELE 73
              + +       + I   +NGE I+     +       Q  +               L+
Sbjct: 31  FWGVGANMMNKSEAAIV--VNGEEISLQQFQQAYDQAFQQLSDQFGGKVPKGMADALGLK 88

Query: 74  KIAVQELIVETLKKQEIEKSGIT---FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
              V  L+ + L +Q  ++ G+     +         Q  ++     + ++S L    + 
Sbjct: 89  DQVVNRLVQQELLRQGGKQMGVQLSAVEIQHAIQAMPQFHKDGAFDVKSYNSILAANRLS 148

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
            + F+  +    +     +          + EI    
Sbjct: 149 PSKFEANIRHDMLAEKTARAINEFSAHASDFEIEEFY 185


>gi|169824179|ref|YP_001691790.1| putative peptidyl-prolyl cis-trans isomerase [Finegoldia magna ATCC
           29328]
 gi|302380852|ref|ZP_07269315.1| PPIC-type PPIASE domain protein [Finegoldia magna ACS-171-V-Col3]
 gi|167830984|dbj|BAG07900.1| putative peptidyl-prolyl cis-trans isomerase [Finegoldia magna ATCC
           29328]
 gi|302311347|gb|EFK93365.1| PPIC-type PPIASE domain protein [Finegoldia magna ACS-171-V-Col3]
          Length = 321

 Score = 78.2 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/323 (11%), Positives = 90/323 (27%), Gaps = 24/323 (7%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN------- 69
              F+ I+  ++ ++        +     I  E I   D+ K +   K            
Sbjct: 1   MKKFLAIVLAMMMVMVTACSNKPNGAVAKIGKEYIYQKDVDKVMEDYKQYYGQDIFNPNT 60

Query: 70  -------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
                   +++   +  LI E +  + ++   I      V     +  +  G + +    
Sbjct: 61  EQGKEALKQIKPKIIDMLINEKIANKLMKDKKIEVSDKEVQAEVDKLQKQLGGADKFKEQ 120

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
              +        +Q      +    +   F   +   + EI     K  +   +      
Sbjct: 121 LKKENMTEQALKEQIEKQ--LKNKKLSQQFEKDFKPSDKEIKDEFDKNIDTYTQYNADHI 178

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD-----VSIGKAQYL 237
           +                K   +  +      K+     + A    +      + GK    
Sbjct: 179 LFSGKDAKGKNLDASKLKAKSELADKTYEEVKNGKNFNEVAKAKSEDPSAKQNSGKLGDF 238

Query: 238 LESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTP 294
           L S +  +F +   K      + P  T+ G   I +  K     +   A K  +    + 
Sbjct: 239 LSSTMVKEFSDALKKMKPGEVSKPVKTEFGYHIIKLNSKVTELDKMTDANKQNIKTAISN 298

Query: 295 TKIEKHEAEYVKKLRSNAIIHYY 317
             I++   +  +K + +  +  Y
Sbjct: 299 KIIQEKVQKEFEKQKKDLGVKIY 321


>gi|213962588|ref|ZP_03390850.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
           sputigena Capno]
 gi|213954914|gb|EEB66234.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
           sputigena Capno]
          Length = 451

 Score = 78.2 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/309 (11%), Positives = 87/309 (28%), Gaps = 15/309 (4%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--INGEL 72
            + +  V+++F                +   +   +I + DI K    L+ Q+       
Sbjct: 5   KIWSILVMLLFTTPFFAQNNERKKVDGVAAVVGDYLILESDIDKAYIDLQQQEVDTREIN 64

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH-----ARNTGLSAEDFSSFLDKQ 127
               + +L+ + L   +  +  +    + V     Q      A+  G   +    +    
Sbjct: 65  RCQMLGKLMEDKLYAHQAVQDSVKLTDSEVRDQVNQRIEFLTAQLGGDIKKLLQFYKKDD 124

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
                     L   S+    +K   +        EI      +       +     +  I
Sbjct: 125 EQSMRDELFNLLKVSMLAQRMKQQIIKDVEVTPEEIRTFFNAIPADERPHFGTELEIAQI 184

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH---DVSIGKAQYLLESDLHP 244
             N +  +  VQK I    + +  + ++       A               +   S    
Sbjct: 185 VVNPVAPKSSVQKVIDQLNDIKKDVEENGMSFSTKAILYSQDRATGGQVLTFNRNSAFDK 244

Query: 245 QFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN-TPTKIEKHEA 302
            F+++     +   + P+ +  G   I +   R   G+     ++      P +      
Sbjct: 245 AFKDVAFTLQEGEISKPFESSFGWHIIQMDKIR---GKEVSVRHILLMPDIPEEALNEAK 301

Query: 303 EYVKKLRSN 311
           E + K+R  
Sbjct: 302 EKISKIRER 310


>gi|206973718|ref|ZP_03234636.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus H3081.97]
 gi|217959835|ref|YP_002338389.1| peptidylprolyl isomerase [Bacillus cereus AH187]
 gi|206747874|gb|EDZ59263.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus H3081.97]
 gi|217064695|gb|ACJ78945.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus AH187]
          Length = 283

 Score = 78.2 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/309 (11%), Positives = 89/309 (28%), Gaps = 50/309 (16%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKINGELE 73
           +      L       +++  +   S  + T  +    +T+ ++SK    L+ +     L 
Sbjct: 1   MKKKKLFLGTIISCVVLALSACGSSDNVVTSKVGN--VTEKELSKE---LRQKYGESTLY 55

Query: 74  KIAVQE-LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           ++ + + L+ +     E  K  +    + +   F       GL  ED             
Sbjct: 56  QMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQLGLKNED------------- 102

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             K+ +  +  +   +K     K      +       +                      
Sbjct: 103 ELKEKMKPEIAFEKAIKATVTEKDVKDNYKPEMKVSHILVKD------------------ 144

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK 251
                 +K  K+ +E            ++++         G+           +F+    
Sbjct: 145 ------EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEIAGFAPGQTVKEFEEAAY 198

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY----VK 306
           K      + P  T  G   I + DK++L     +K  +       +++    ++    V 
Sbjct: 199 KLDAGQVSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVN 258

Query: 307 KLRSNAIIH 315
           +L  +A I 
Sbjct: 259 ELLKDADIK 267


>gi|153872856|ref|ZP_02001627.1| peptidyl-prolyl cis-trans isomerase D [Beggiatoa sp. PS]
 gi|152070679|gb|EDN68374.1| peptidyl-prolyl cis-trans isomerase D [Beggiatoa sp. PS]
          Length = 576

 Score = 78.2 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 79/269 (29%), Gaps = 14/269 (5%)

Query: 52  TDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
           T  +   R +LL  Q   G L    V +         E +++       +++Y  +   R
Sbjct: 69  TAFEWEIRRSLLTDQIREGVLRSALVTD-------YDEQQRTRFDEQQRSISYLIIPKTR 121

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
                    +            +K    ++  + ++ K+D        E  +    Q+ K
Sbjct: 122 FDKAVTITDADIEKYYQEHLERYKTVEKVRIEYVELSKSDLANAEPLSEEMLKERYQERK 181

Query: 172 NITVREYLIRTVLFSIPDNKLQ---NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-H 227
                          I   K     ++   +++++D               ++F+  I  
Sbjct: 182 ASFTTPGRWNARHILIEVGKEASVSDKEEAKQKVQDILAKIKAGESVEKLAKQFSDDIGS 241

Query: 228 DVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIAL 284
               G   +     +   F+         + + P  T+ G   I + D +         +
Sbjct: 242 KNQGGDLGWFDSGTMVKPFEEALKSMKVGDISEPIKTRFGFHIIELVDVQPEKVLPFEQV 301

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           +  L A     + +      V+++ + A 
Sbjct: 302 REQLEADLKNEQADSAFYGQVEQMANLAF 330


>gi|288941065|ref|YP_003443305.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Allochromatium
           vinosum DSM 180]
 gi|288896437|gb|ADC62273.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Allochromatium
           vinosum DSM 180]
          Length = 282

 Score = 78.2 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/277 (12%), Positives = 74/277 (26%), Gaps = 50/277 (18%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             T+NG      D+ +   + +LQ      +    Q+L  E +      + G        
Sbjct: 34  IATVNGTP-YRLDVFRVFFMERLQGRPASNDPAVQQQLFDEFMNLIVASQEGDRRKLEGE 92

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                           + +       I  +  +   A   I     + ++  ++  L+ E
Sbjct: 93  RNVVAALELERMKVMSNAALSAMADEIEPSEKELKDAYDRIKEQATRTEYKARHILLKSE 152

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
             A                                         +   +  K     +K 
Sbjct: 153 DEAK-------------------------------------KLIKQLDKGAKFEELAKKH 175

Query: 223 ASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTT-NPYVTQKGVEYIAICDKR--DL 278
           +        G   +   + +   F + + K    + T  P  TQ G   I + + R  + 
Sbjct: 176 SEGPTGKDGGDLGWFDPAQMVAPFAEAVTKLEPGSYTKEPVQTQFGWHIIELQETRKAEP 235

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                 K  L+A     K        + ++R+NA++ 
Sbjct: 236 PAFEDAKPQLTALVRRQK--------LAEMRNNAMVE 264


>gi|228919876|ref|ZP_04083232.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839777|gb|EEM85062.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 286

 Score = 78.2 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 86/304 (28%), Gaps = 45/304 (14%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S +I T+  G+ IT  +   ++          +  K 
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKIVTSKAGD-ITKEEFYDQMKT--------QAGKQ 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +++E +  +  +      D                   + F + L +QGI +   K
Sbjct: 52  VLNNMVMEKVLIKNYKVEDKDVDKKFD--------EMKKQYGDQFDTLLKQQGIKEETIK 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +  Q      ++     K      +       +                         
Sbjct: 104 TGVRAQLAQEKAIEKTITDKELKENYKPEIKASHILVKD--------------------- 142

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              +   K  +E   +        ++++         G   Y     +  +F++   K  
Sbjct: 143 ---EATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGYFTAGKMVKEFEDAAYKLK 199

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE--AEYVKKLRSN 311
           ++  + P  +Q G   I + D ++      +K  +       K +      + + K    
Sbjct: 200 KDEVSEPVKSQFGYHIIKVTDIKEQKPFDEVKGDIKKDLVQKKAQDAAFMNDLMMKEIKK 259

Query: 312 AIIH 315
           A + 
Sbjct: 260 ADVK 263


>gi|30019198|ref|NP_830829.1| peptidylprolyl isomerase [Bacillus cereus ATCC 14579]
 gi|218233989|ref|YP_002365810.1| peptidylprolyl isomerase [Bacillus cereus B4264]
 gi|229042892|ref|ZP_04190626.1| Foldase protein prsA 1 [Bacillus cereus AH676]
 gi|229126454|ref|ZP_04255469.1| Foldase protein prsA 1 [Bacillus cereus BDRD-Cer4]
 gi|229143755|ref|ZP_04272176.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST24]
 gi|229149355|ref|ZP_04277591.1| Foldase protein prsA 1 [Bacillus cereus m1550]
 gi|296501758|ref|YP_003663458.1| peptidylprolyl isomerase [Bacillus thuringiensis BMB171]
 gi|46396827|sp|Q81GY5|PRSA1_BACCR RecName: Full=Foldase protein prsA 1; Flags: Precursor
 gi|29894741|gb|AAP08030.1| Protein export protein prsA precursor [Bacillus cereus ATCC 14579]
 gi|218161946|gb|ACK61938.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus B4264]
 gi|228633997|gb|EEK90590.1| Foldase protein prsA 1 [Bacillus cereus m1550]
 gi|228639708|gb|EEK96117.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST24]
 gi|228657034|gb|EEL12857.1| Foldase protein prsA 1 [Bacillus cereus BDRD-Cer4]
 gi|228726439|gb|EEL77662.1| Foldase protein prsA 1 [Bacillus cereus AH676]
 gi|296322810|gb|ADH05738.1| peptidylprolyl isomerase [Bacillus thuringiensis BMB171]
          Length = 286

 Score = 78.2 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 86/304 (28%), Gaps = 45/304 (14%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S +I T+  G+ IT  +   ++          +  K 
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKIVTSKAGD-ITKEEFYDQMKT--------QAGKQ 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +++E +  +  +      D                   + F + L +QGI +   K
Sbjct: 52  VLNNMVMEKVLIKNYKVEDKDVDKKFD--------EMKKQYGDQFDTLLKQQGIKEETIK 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +  Q      ++     K      +       +                         
Sbjct: 104 TGVRAQLAQEKAIEKTITDKELKENYKPEIKASHILVKD--------------------- 142

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              +   K  +E   +        ++++         G   Y     +  +F++   K  
Sbjct: 143 ---EATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGYFTAGKMVKEFEDAAYKLK 199

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE--AEYVKKLRSN 311
           ++  + P  +Q G   I + D ++      +K  +       K +      + + K    
Sbjct: 200 KDEVSEPVKSQFGYHIIKVTDIKEQKPFDEVKGDIKKDLVQKKAQDAAFMNDLMMKEIKK 259

Query: 312 AIIH 315
           A + 
Sbjct: 260 ADVK 263


>gi|183601065|ref|ZP_02962558.1| hypothetical protein PROSTU_04689 [Providencia stuartii ATCC 25827]
 gi|188019406|gb|EDU57446.1| hypothetical protein PROSTU_04689 [Providencia stuartii ATCC 25827]
          Length = 618

 Score = 78.2 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/398 (9%), Positives = 99/398 (24%), Gaps = 86/398 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T  +     +    +++ F +  +  Y     S+     +NG+ I+        
Sbjct: 1   MMDNLRTKANSPFIKVLLAIIILSFVLTGVAGYMIGGSSND-AAKVNGQSISREQFQTAF 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELI-----------------VETLKK 87
           +  +    +                  L    +  LI                  + +K 
Sbjct: 60  SQERQSLQDSLGDKFSEIAGNEESMKFLRNQVLNNLINSTLMAEYANELNLSASDQQVKD 119

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA-------- 139
              E      +       + Q       SA++ +  +    I       ++         
Sbjct: 120 AIFEMPVFQTNGKFDGDKYRQILAANNYSADNLAEQVRANLILSQLSDSFIKTDFALPSE 179

Query: 140 -----------IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT------ 182
                       +     +   D   K    E EI A     ++  +    ++       
Sbjct: 180 VKTYAELVLQEREIRVATLSLADEQAKQTATEDEIKAYYNANQDSFIAPEKVQVSYVEID 239

Query: 183 ------------VLFSIPDNKLQNQGFVQKRIKDAE-------------ESRLRLPKDCN 217
                        + +  +  L+N    +++                  E +        
Sbjct: 240 AAALPPQSVTDEEVKTYYEQNLKNYTQAEQKHYSMIQVASEKEANAIIDELKAGADFVAL 299

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
             EK   K+   + G   ++ E+    +  N     +   + P  +        + D + 
Sbjct: 300 ATEKSTDKLSAGNKGIIGWMEEASTPSEIVNANLTEKGQISTPIKSDSNFVIFRLDDIKP 359

Query: 278 LGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
              +   ++K  +  +    K  K   +  +K+   A 
Sbjct: 360 ESIKPLDSVKDEIKNKLIQDKNSKQFYDLQQKVSEAAT 397


>gi|121609649|ref|YP_997456.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter
           eiseniae EF01-2]
 gi|121554289|gb|ABM58438.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter
           eiseniae EF01-2]
          Length = 643

 Score = 78.2 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/255 (9%), Positives = 66/255 (25%), Gaps = 11/255 (4%)

Query: 63  LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
            +            +  ++   L      +  +       +    +            + 
Sbjct: 151 FEANLRRNIAADQVLDAVLSTALVANAQARLALDALYERRDIQVARFDAPDFAGRVLPTD 210

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKND--FMLKYGNLEMEIPANKQKMK----NITVR 176
              +     +  +     Q+    +V +           E E+ +               
Sbjct: 211 ADLQSYYDAHPAQFRQPEQATVEYLVLDLDSVRATITVPEDELRSYYDSDYLPRIMAKQE 270

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI--HDVSIGKA 234
                 ++    D     +   + R  +      + P D   L K +S       + G  
Sbjct: 271 RRASHILISVAKDAPAAEREKAKARATELLAQLRKTPADFAPLAKQSSDDKGSAAAGGDL 330

Query: 235 QYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQ 291
            +     +   F+  +    +   ++   T+ G   I + D +     G    +A ++A+
Sbjct: 331 NFFARGAMTKPFEEAVFALKKGQISDVVETEFGYHIIELTDIKTPPQPGFEEARAVIAAE 390

Query: 292 NTPTKIEKHEAEYVK 306
               + ++  AE  +
Sbjct: 391 LGQQRAQRQFAEMAE 405


>gi|325479410|gb|EGC82506.1| putative peptidylprolyl isomerase PrsA1 [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 248

 Score = 78.2 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 67/239 (28%), Gaps = 13/239 (5%)

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
            +  K     + G  F++            N  +  +D       +        + +   
Sbjct: 19  QDVYKLMANMEDGQRFNNEEGIKVLCDEIVNQEILLKDAVDKKLDEETDFVKELEAVKDN 78

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
            +    + +    +    + EI A  +K K       L       + D +  ++   +  
Sbjct: 79  MLKNYAM-HKIFEEIKLDDSEIKAYYEKNKENLNPPLLYEASHILVKDLEEASKIKKE-- 135

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNP 260
                       +     +K++      + G      +  +  +FQ           + P
Sbjct: 136 -------IEEGLEFSEAAKKYSIDPSKDNGGSLGKFPKGVMVKEFQEGLDSIEVGQISEP 188

Query: 261 YVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
             +Q G   I + +    +      +K  +  +    K ++     + +++ +  +  Y
Sbjct: 189 VKSQFGYHLIKLENIENVETPSYDEIKDQVKQRVLMIKRQEAYLNKLDEIKKDIEVKKY 247


>gi|255601607|ref|XP_002537715.1| rotamase, putative [Ricinus communis]
 gi|223515366|gb|EEF24668.1| rotamase, putative [Ricinus communis]
          Length = 396

 Score = 78.2 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 48/151 (31%), Gaps = 7/151 (4%)

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
           + E     ++       +   R     +  N  ++     +  K  +E    + K  +K 
Sbjct: 9   DEEAKKFYEENAAKFQGDEERRASHILVTFNGKKDAAAKAEAKKKIDEILAEVKKSPDKF 68

Query: 220 EKFASKIH-----DVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAIC 273
            + A K         + G   ++    +   F++     S  + + P  T+ G   I + 
Sbjct: 69  AELAKKYSQDPGSAANGGDLGFVKRGLMVKPFEDALFGMSPGSISGPIETEFGYHIIKLN 128

Query: 274 DKRD-LGGEIALKAYLSAQNTPTKIEKHEAE 303
           + +        +K  + A+    K     +E
Sbjct: 129 EVKGAAQSFDQVKGQIRAELMYQKALAKFSE 159


>gi|224368972|ref|YP_002603136.1| PpiD1 [Desulfobacterium autotrophicum HRM2]
 gi|223691689|gb|ACN14972.1| PpiD1 [Desulfobacterium autotrophicum HRM2]
          Length = 630

 Score = 78.2 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 67/243 (27%), Gaps = 8/243 (3%)

Query: 67  KINGELEKIAVQELIVET--LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                L +  V++L+  T  +  QE         +     + V +       A D  +  
Sbjct: 151 MQLQALREQKVRDLVFSTLSVSDQEARAWYTHSKTQVGIDYLVFNPVAYKDIAVDAKALT 210

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           D        +K    +   + +    D+  +    + EI A   +  +       +    
Sbjct: 211 DFYESNKEKYKSEAELTVKYLEFAVKDYQDRVTISDDEIKAYYDENLDQYKVPEKVEARH 270

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
             I   +  ++  V+    +AE    +           + F+        G         
Sbjct: 271 ILIRVPQDADEATVEAARNEAETIHAKAVGGEDFSLLAKTFSQGPTKDDGGYLGTFARDA 330

Query: 242 LHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIE 298
           +   F +     +    + P  TQ G   I +  K          + A +    +  +++
Sbjct: 331 MVKPFAEAAFSLASGEISKPVRTQFGWHVIKVEAKLPASTTALDKVAAEIRKTLSTAELK 390

Query: 299 KHE 301
              
Sbjct: 391 NLA 393



 Score = 72.8 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 72/237 (30%), Gaps = 22/237 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I  +    ++++F  + + S  +   +      IN + IT  +  +  
Sbjct: 1   MLKLMRENTGSWIIKILLGLIVLVFVFLGMGSIGAKRGNE--VAMINDQPITLNEYQRSY 58

Query: 61  ALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF- 106
             +  Q                 +++K A+  LI E L   E ++  +   +  +     
Sbjct: 59  QNIIEQMRQRFGDNLNDEILQMLQVKKQALDRLIDERLISGEADRLKVEVSNQELANSLL 118

Query: 107 -VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
            +   R  G+        +  +        + + +Q++    V++         + E  A
Sbjct: 119 DIPAFRKNGVFDLATYKVVLSRNRMSPESFEAMQLQALREQKVRDLVFSTLSVSDQEARA 178

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                K     +Y     L   P          +      E ++ +   +     K+
Sbjct: 179 WYTHSKTQVGIDY-----LVFNPVAYKDIAVDAKALTDFYESNKEKYKSEAELTVKY 230


>gi|229165978|ref|ZP_04293743.1| Foldase protein prsA 1 [Bacillus cereus AH621]
 gi|228617531|gb|EEK74591.1| Foldase protein prsA 1 [Bacillus cereus AH621]
          Length = 286

 Score = 78.2 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/304 (10%), Positives = 87/304 (28%), Gaps = 45/304 (14%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S +I T+  G+ IT  +   ++          +  K 
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKIVTSKAGD-ITKEEFYNQMKT--------QAGKQ 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +++E +  +  +      D                   + F + + +QG+ +   K
Sbjct: 52  VLNNMVMEKVLIKNYKVDEKEVDKKFD--------EMKKQVGDQFDTLMKQQGLKEETVK 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +         ++     K      +       +                         
Sbjct: 104 NGVRASLAQEQAIEKTITDKELKENYKPEIKASHILVKD--------------------- 142

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKS 253
              +   K  +E   +     +  ++++         G   Y     +  +F++   K  
Sbjct: 143 ---EATAKKVKEELGQGKSFEDLAKQYSEDTGSKEKGGDLGYFTAGKMVKEFEDAAYKMK 199

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRSN 311
           ++  + P  +Q G   I + D ++      +K  +       K +  +   + + K    
Sbjct: 200 KDEVSEPVKSQFGYHIIKVTDIKEQKPFDEVKGDIKKDLVQKKTQDAQFMNDLMMKEIKK 259

Query: 312 AIIH 315
           A + 
Sbjct: 260 ADVK 263


>gi|296503398|ref|YP_003665098.1| peptidylprolyl isomerase [Bacillus thuringiensis BMB171]
 gi|296324450|gb|ADH07378.1| peptidylprolyl isomerase [Bacillus thuringiensis BMB171]
          Length = 268

 Score = 78.2 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 81/289 (28%), Gaps = 44/289 (15%)

Query: 31  VSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEI 90
           +S  +   S  I TT +G  I++ D +K++             K  + E++VE +   + 
Sbjct: 5   LSLSACGSSDNIVTTKSGS-ISESDFNKKLK--------ENYGKQNLSEMVVEKVLHDKY 55

Query: 91  EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
           + +                        E      D               Q      +  
Sbjct: 56  KVTDEEVT---------------KQLKELKDKMGDNFNTYMESNGVKNEDQLKEKLKLTF 100

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
            F         E          + V   L++                 +K  K+ +E   
Sbjct: 101 AFEKAIKATVTEKDIKDHYKPKLQVSHILVK----------------DEKTAKEIKEKLN 144

Query: 211 RLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVE 268
                    ++++         G+        +  +F++   K      + P  +  G  
Sbjct: 145 SGEDFAALAKQYSEDPGSKEKGGELSEFGPGMMVKEFEDAAYKLEVGQLSEPVKSSFGYH 204

Query: 269 YIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRSNAIIH 315
            I + DK++L      K  +  +    +I+  +   +  + L  NA I 
Sbjct: 205 IIKLTDKKELKPYEEEKENIRKELEQQRIQDPQFHQQVTRDLLKNADIK 253


>gi|222823915|ref|YP_002575489.1| major antigenic peptide PEB-cell binding factor [Campylobacter lari
           RM2100]
 gi|222539137|gb|ACM64238.1| major antigenic peptide PEB-cell binding factor [Campylobacter lari
           RM2100]
          Length = 271

 Score = 78.2 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/296 (10%), Positives = 89/296 (30%), Gaps = 33/296 (11%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVET 84
             +V        ++++ +  T++G  I+D ++++  A +       +L     + +I + 
Sbjct: 4   ISLVAAALLTGLSLNAAVVATLDGNNISDTEVNEFFAPMLRGAKITDLPAEQKKAIIDQY 63

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
           + +Q + K                            +     +       +   A ++I 
Sbjct: 64  IVQQLVLKD---------------------------AKAQKIENDPSYKEELERAKEAIL 96

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
            ++ +        N + +     +  K+   +   ++     +   K       +     
Sbjct: 97  VNIYQKKIFDSIKNDDAKAKKFYEANKDKFTKPAQVKAKHILVTSEKEAKDIIAELSKLS 156

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTN-PYV 262
            +    +  +   +  K   K      G   +  ES +   F +      +   +  P  
Sbjct: 157 GKALNDKFAQLAKE--KSIDKGSSAQGGDLGWFAESTMVKPFADAAFSMKKGTISKTPVK 214

Query: 263 TQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +  G   I   D R         +KA + +     + ++   +  ++L   A + Y
Sbjct: 215 SDFGYHIILKEDARAKSTMSYNEVKAGIESNIKMEEFKELMNKKAQELLQKAKVEY 270


>gi|313158136|gb|EFR57541.1| PPIC-type PPIASE domain protein [Alistipes sp. HGB5]
          Length = 468

 Score = 78.2 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/257 (10%), Positives = 76/257 (29%), Gaps = 15/257 (5%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQ 88
              M  ++   +    I   +++     L  Q+         +    A++ L+ + L   
Sbjct: 23  QQVMLDKVVAVVGSSSILYSEVADHARQLTAQRRAEGYTSDRDPMNEALEALMTQKLLFN 82

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV- 147
           + +   +  ++  +     +  +N   +         K  +   + ++ +  +       
Sbjct: 83  QAQIDSVKINAGDIASHVEEQVQNMIEAEGSIPRLEAKHHMAIFNIRENMRQRYEEQSYA 142

Query: 148 --VKNDFMLKYGNLEMEIPANKQKMKNIT----VREYLIRTVLFSIPDNKLQNQGFVQKR 201
             ++N+ + K   +  E+    + +   +      +Y+   +           Q   ++ 
Sbjct: 143 SSMQNEVVSKVAVIPGEVERFYKSIDKDSLPTIAEQYVYAQITRFPKSITQAKQRTRERL 202

Query: 202 IKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTN 259
           +   E       K  N    ++      +  G+      + L   F            + 
Sbjct: 203 LDMRERVITGKAKFENLARMYSQDPGTMMRGGEMDPAPLASLDSSFAAALENMKPGQISE 262

Query: 260 PYVTQKGVEYIAICDKR 276
              +Q G   I + DKR
Sbjct: 263 VVESQFGFHIIQMLDKR 279


>gi|94967775|ref|YP_589823.1| hypothetical protein Acid345_0744 [Candidatus Koribacter versatilis
           Ellin345]
 gi|94549825|gb|ABF39749.1| hypothetical protein Acid345_0744 [Candidatus Koribacter versatilis
           Ellin345]
          Length = 343

 Score = 78.2 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/300 (14%), Positives = 97/300 (32%), Gaps = 19/300 (6%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALL---------KLQKINGELEKIAVQELIVET 84
                 ++    +NG V+T+ D+ + +  +           +K+  E+ K A+Q ++ E 
Sbjct: 43  ARPVDETKPVARVNGTVLTERDLLREMYTIFPYAAQHNGVPKKMEPEMRKGALQMIVFEE 102

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
           L  QE  +  ITFD + ++    +  +      E  +  +  Q        + +    + 
Sbjct: 103 LVYQEAVRRKITFDPSIISKGEAEMRKQFPSQQEFDAWIVA-QFGSRQAMHEKMRRTMLV 161

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI-- 202
             ++K +   K    + +  A  +       R         SI   +  N    ++    
Sbjct: 162 QILLKKEVNDKSVVTDAQAKAFYEANSKQFDRPETFSIQTISIIPPQGANPEVKKEADKR 221

Query: 203 ----KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ-FQNLLKKSQNNT 257
                 A ++     +     EK +     V +G  + +  + L P   +  L       
Sbjct: 222 AHDAFKAAKATKTYEEFGLLAEKVSDDDWHVKMGDRKAIDRASLPPDVVKAALVMKPGEV 281

Query: 258 TNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           ++            +             +KA L       K E+    + K+LR +A + 
Sbjct: 282 SDLIQIGPNYTMFRLNAHTPAGRTPFGEVKAKLQEDMKKAKTEQLRGSFDKQLRQSAKVE 341


>gi|170717232|ref|YP_001784350.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haemophilus somnus
           2336]
 gi|168825361|gb|ACA30732.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haemophilus somnus
           2336]
          Length = 618

 Score = 78.2 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/393 (8%), Positives = 92/393 (23%), Gaps = 82/393 (20%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDG----DI 56
           +  K+  + S  +  +    + + F +  +  Y  +  +      +NGE I+        
Sbjct: 2   LMEKLNNASSGIVSKIIFGLIGVSFVLSGVAGYM-FIRTDTSVAKVNGEEISQQVFLQQY 60

Query: 57  SKRIALLKLQ----------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF 106
           +     L                  L    +  LI + L +Q  ++  +      V+   
Sbjct: 61  NNEYQRLSENLGAKFAEVADSAAKHLRHEVLDRLINQELLRQYAQELKLGISDKQVSLAI 120

Query: 107 ---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML--------- 154
                         + +   L   GI  + +  Y+    +   + +              
Sbjct: 121 VNSPMFQNEGKFDNKIYQQILASSGISSDTYAAYVREGLVLEQLQQGIANSDFQVPIQLN 180

Query: 155 ------------------------KYGNLEMEIPANKQKMKNIT---------------- 174
                                   K    E EI    Q  K                   
Sbjct: 181 ELAKNFFQRRDVRLAVLSLDDEMQKQTVTEQEIEQYYQANKANFAVPERVKVQYLDLTRA 240

Query: 175 ---VREYLIRTVLFSIPDNKLQNQGFV---------QKRIKDAEESRLRLPKDCNKLEKF 222
               +  +    +     +                 ++  +    +           + +
Sbjct: 241 IADQKVKISDIEIAQYYQDNKAQYITKHLAHIQLPTEQEAQSVYANLQNGEDFSALAKLY 300

Query: 223 A-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           +   +     G   +++   +   F++ +   +    + P         I + D +    
Sbjct: 301 SMDTLSAQKGGDLDWVVNGMMPLAFESAVTLLNVGEYSQPVKVDNAYHIIKVLDMKTREL 360

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
              +K  ++ +     +        K++   A 
Sbjct: 361 -NDVKEEIATKLRNDLVTNAFYSLEKQMNEKAF 392


>gi|66769563|ref|YP_244325.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|66574895|gb|AAY50305.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 656

 Score = 78.2 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/191 (8%), Positives = 54/191 (28%), Gaps = 9/191 (4%)

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
             +   D H + +   +++  + V+ +          +    +++ +    R       L
Sbjct: 231 QIKQWYDGHPQDFRQPETVTIEYVELNAATLPPATAADEATLRKRYEEEKARFVEPDQRL 290

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLR-----LPKDCNKLEKFASKI-HDVSIGKAQYLL 238
            S       +    QK  ++                    +  +       + G   ++ 
Sbjct: 291 ASHILISAGSDAAAQKAGEEKAAKLAAQAKQPGADFAALAKANSQDPGSKDAGGDLGWVE 350

Query: 239 ESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
           +  +   F++        +   P  T+ G   I + + +   G+      +  Q    ++
Sbjct: 351 KGTMVKPFEDALFAMKAGDVVGPIKTEFGYHVIQLREVKGGQGKS--FEQVRDQLAAEQL 408

Query: 298 EKHEAEYVKKL 308
           +    +    L
Sbjct: 409 KADADKAFADL 419



 Score = 50.1 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 56/236 (23%), Gaps = 34/236 (14%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTI-------------- 46
           M  K+    S +I       ++I F  V   SY     ++     +              
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFLFVIDNSYLGGIGANN-VAKVQAPPTWWKSAPSWW 59

Query: 47  ------NGEVITDGDISKRIALLKLQKINGELEK-------------IAVQELIVETLKK 87
                     I+  D   R    ++Q+   + E                + +L+ E + +
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQSRMQERQRQGENFDPRQFESRENKLQVLDQLVDEQVVR 119

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
              E +GI     TV  +                 +      G            +   +
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQIDGKFSPDQYRAALAQGTPPRTPAQFDALVRDSL 179

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
            ++              +  +++  +      +   +   P          Q +  
Sbjct: 180 QQSVIPQAVAESGFATKSEFERLLTLMGETRDVELAMLPEPTADTAPVSDAQIKQW 235


>gi|256830955|ref|YP_003159683.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256580131|gb|ACU91267.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfomicrobium
           baculatum DSM 4028]
          Length = 632

 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/222 (6%), Positives = 59/222 (26%), Gaps = 7/222 (3%)

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
                 + T++Y                +   +       ++      +  +  +     
Sbjct: 181 YTYGRSTATISYLMYPWENYQNQVNATDARINEYYEARKANYAVPARAKIDYLLLTPATL 240

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA---EESR 209
                    E      + K     E  ++     +  ++  ++  V+K ++     ++  
Sbjct: 241 ADPAAVSPEETEKYYAEQKEQFKIEEQVKASHLLVRVDENADEESVEKAMQTIKAAQKDL 300

Query: 210 LRLPKDCNKLEKFASKIHDVS-IGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGV 267
                      ++          G+  +     +   F++      +   + P  TQ G 
Sbjct: 301 AAGKSFAEVAAQYTEDPSGTQTGGELGWFGRGRMVKPFEDAAFALEKGAVSEPVRTQFGF 360

Query: 268 EYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
             I + D +        ++ + ++      +  +   + + +
Sbjct: 361 HLITVEDTKSAGYENYESVASDIANIIAEDRAAEILQDRLDQ 402



 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/324 (8%), Positives = 81/324 (25%), Gaps = 33/324 (10%)

Query: 1   MTSKVFTSLSDF-IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKR 59
           M   +      + IK+L    + +      +   ++      +  T+N   I      +R
Sbjct: 1   MLDILRQGAQSWGIKILFGIIIAVFVLAFGMNRVQNDQT--TVVATVNDSPILFRPFQER 58

Query: 60  IALLKLQKINGE------------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
           +        +               ++  ++++++E L  Q+  K G+T     +     
Sbjct: 59  LQRSLELARSQNPNLTAEILAQMGFKRQILEQMVIEELMMQQAAKLGLTVSKEELAKEIH 118

Query: 108 QHARN----TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
                           + + L    +    F+       +   + +    L     E + 
Sbjct: 119 LIPAFQNESNVFDPASYQNVLRANNLTPGKFESEYMRGMVMDKL-RTYVGLPGRLGEDQA 177

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
                  ++     Y     L    +N          RI +  E+R        + +   
Sbjct: 178 RDFYTYGRSTATISY-----LMYPWENYQNQVNATDARINEYYEARKANYAVPARAKIDY 232

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIA 283
             +   ++        + + P+        Q          K    +    + D   +  
Sbjct: 233 LLLTPATLAD-----PAAVSPEETEKYYAEQKEQFKIEEQVKASHLLV---RVDENADEE 284

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKK 307
                       + +    +   +
Sbjct: 285 SVEKAMQTIKAAQKDLAAGKSFAE 308


>gi|332521070|ref|ZP_08397528.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lacinutrix algicola
           5H-3-7-4]
 gi|332043163|gb|EGI79360.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lacinutrix algicola
           5H-3-7-4]
          Length = 482

 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/286 (10%), Positives = 78/286 (27%), Gaps = 16/286 (5%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKI--NGELEKIAVQELIVETLKKQEIEKSGITF 97
             +   +   ++ D D+ K I  LK      +          L+ + L      +  I  
Sbjct: 58  DGVAAVVGEYIVLDSDVDKTILQLKASGNDISQFTNCELFGRLLEDKLYAHHAIQDSIVV 117

Query: 98  D----SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
                 + VN    +   N     E    +              +   +     ++   +
Sbjct: 118 SDAEIRSYVNQQVERFRVNFKTEDEMLKFYKKDNIKALTDEMFEINKANKLASEMQRKIV 177

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
            +      E+     ++ +     +     +  I           Q+ I    E +  + 
Sbjct: 178 DEIEVTPEEVRQYFSEIPDNEKPTFGTELKVAQIVIEPKVTPEAEQEVIDRLNEFKKDVE 237

Query: 214 KDCNKLEK-----FASKIHDVSIGKAQYLLES--DLHPQFQNLLKK-SQNNTTNPYVTQK 265
           ++            A      + G+   +  +   +  +F+       +   + P+ T+ 
Sbjct: 238 ENGASFSAKALFNSADTGSKRTGGRLPTMNRAKPQMVKEFREATFSLQEGEISEPFKTEF 297

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           G   + +   R    +   +  L       + +    E ++ +R N
Sbjct: 298 GWHIVYLEKIRGQEYD--ARHILLIPEISDEAKAEAKEKLEGIRQN 341


>gi|188992771|ref|YP_001904781.1| Peptidylprolyl isomerase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167734531|emb|CAP52741.1| Peptidylprolyl isomerase [Xanthomonas campestris pv. campestris]
          Length = 656

 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/191 (8%), Positives = 54/191 (28%), Gaps = 9/191 (4%)

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
             +   D H + +   +++  + V+ +          +    +++ +    R       L
Sbjct: 231 QIKQWYDGHPQDFRQPETVTIEYVELNAATLPPATAADEATLRKRYEEEKARFVEPDQRL 290

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLR-----LPKDCNKLEKFASKI-HDVSIGKAQYLL 238
            S       +    QK  ++                    +  +       + G   ++ 
Sbjct: 291 ASHILISAGSDAAAQKAGEEKAAKLAAQAKQPGADFAALAKANSQDPGSKDAGGDLGWVE 350

Query: 239 ESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
           +  +   F++        +   P  T+ G   I + + +   G+      +  Q    ++
Sbjct: 351 KGTMVKPFEDALFAMKAGDVVGPIKTEFGYHVIQLREVKGGQGKS--FEQVRDQLAAEQL 408

Query: 298 EKHEAEYVKKL 308
           +    +    L
Sbjct: 409 KADADKAFADL 419



 Score = 50.1 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 56/236 (23%), Gaps = 34/236 (14%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTI-------------- 46
           M  K+    S +I       ++I F  V   SY     ++     +              
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFLFVIDNSYLGGIGANN-VAKVQAPPTWWKSAPSWW 59

Query: 47  ------NGEVITDGDISKRIALLKLQKINGELEK-------------IAVQELIVETLKK 87
                     I+  D   R    ++Q+   + E                + +L+ E + +
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQSRMQERQRQGENFDPRQFESRENKLQVLDQLVDEQVVR 119

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
              E +GI     TV  +                 +      G            +   +
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQIDGKFSPDQYRAALAQGTPPRTPAQFDALVRDSL 179

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
            ++              +  +++  +      +   +   P          Q +  
Sbjct: 180 QQSVIPQAVAESGFATKSEFERLLTLMGETRDVELAMLPEPTADTAPVSDAQIKQW 235


>gi|294672825|ref|YP_003573441.1| peptidylprolyl isomerase domain-containing protein [Prevotella
           ruminicola 23]
 gi|294471979|gb|ADE81368.1| peptidylprolyl isomerase domain protein [Prevotella ruminicola 23]
          Length = 452

 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/265 (9%), Positives = 75/265 (28%), Gaps = 16/265 (6%)

Query: 40  SRIRTTINGEVITDGDIS--KRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
             +   +  E I   D+   +  + ++  K +G  +    +++ V+ L K + +   I  
Sbjct: 25  DEVVWVVGDEAILRSDVEALRMQSAMEGVKWSGNPDCTIPEQIAVQKLFKHQAQIDSIEV 84

Query: 98  DSNTVNYFFVQHARNT-GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK---NDFM 153
               V     Q       +         + +       +  L  +     +V+      +
Sbjct: 85  TDADVAQEVEQQISYWLEMVDGSRERLEEYKHQNLTQIRADLREEMKDRQMVQKMKQKLV 144

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                   E+      +   ++        +  +       Q  + +   +      R+ 
Sbjct: 145 EDIAVTPAEVRRYFSALPQDSLPFVPTEVEVQIVQLTPKIEQEELNRVKDELRNYTERVN 204

Query: 214 K----DCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQN--NTTNPYVTQKG 266
           K         + ++         G+   +    L P F  +     +    +    ++ G
Sbjct: 205 KGETRFQTLAQLYSEDPGSARRGGELGLMGRGTLDPAFAAVAFNLTDPKKVSKIVESEFG 264

Query: 267 VEYIAICDKRDLGGEIALKAYLSAQ 291
              I + +KR   G+     ++  +
Sbjct: 265 FHIIQLIEKR---GDKVNVRHILRK 286


>gi|146296118|ref|YP_001179889.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409694|gb|ABP66698.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 340

 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/334 (9%), Positives = 93/334 (27%), Gaps = 23/334 (6%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
               S  +     +  +I+  ++           +++   +NG+ IT  +   R   LK 
Sbjct: 1   MNRKSLIVITSIIFVSIILSLLILKDHIVKMIDDNKVVLEVNGDQITKREYKIRFNTLKE 60

Query: 66  QKINGELEKIAVQEL----------------IVETLKKQEIEKSGITFDSNTVNYFFVQH 109
             I        + ++                I+        E               ++ 
Sbjct: 61  NAIQFSSRTDILDQVFNGKTYRELLKDELFRILIEELLCLQEARRKNIYLTRQEEDEIRK 120

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
                    +  ++ ++        + +         ++   +      + +      + 
Sbjct: 121 YIEELKRDMEMRNYFNQYLRKIGSDENHFYRDLQKTRIINKLYKYVTERITLSDSEVIKY 180

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-D 228
                 +   I+ +   +     +     +K   +      R       ++K++     D
Sbjct: 181 YNANKSQFRKIKVMDIFLRVENAEEDAKKRKVANEIISELKRGEDFEKLVKKYSEVESLD 240

Query: 229 VSIGKAQYLLESDLHPQF-----QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIA 283
              G   Y  + +   Q+     + + K +    +N   T  G   + + D++       
Sbjct: 241 GKKGIIDYFRKGEKEAQYGSVFEEEVFKLAVGQISNVIKTVNGYHIVKVIDEK-YMPFDE 299

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           +K  +  +    K ++    Y++ L+  + I  Y
Sbjct: 300 VKGEIQTKLIKQKKDEVFKSYIESLKKMSKISIY 333


>gi|229131944|ref|ZP_04260809.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST196]
 gi|228651535|gb|EEL07505.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST196]
          Length = 286

 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/304 (10%), Positives = 87/304 (28%), Gaps = 45/304 (14%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S +I T+  G+ IT  +   ++          +  K 
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKIVTSKAGD-ITKEEFYNQMKT--------QAGKQ 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +++E +  +  +      D                   + F + + +QG+ +   K
Sbjct: 52  VLNNMVMEKVLIKNYKVDEKEVDKKFD--------EMKKQVGDQFDTLMKQQGLKEETVK 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +         ++     K      +       +                         
Sbjct: 104 NGVRASLAQEKAIEKTITDKELKENYKPEIKASHILVKD--------------------- 142

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKS 253
              +   K  +E   +     +  ++++         G   Y     +  +F++   K  
Sbjct: 143 ---EATAKKVKEELGQGKSFEDLAKQYSEDTGSKEKGGDLGYFTAGKMVKEFEDAAYKMK 199

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRSN 311
           ++  + P  +Q G   I + D ++      +K  +       K +  +   + + K    
Sbjct: 200 KDEVSEPVKSQFGYHIIKVTDIKEQKPFDEVKGDIKKDLVQKKTQDAQFMNDLMMKEIKK 259

Query: 312 AIIH 315
           A + 
Sbjct: 260 ADVK 263


>gi|324326356|gb|ADY21616.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 283

 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/309 (11%), Positives = 89/309 (28%), Gaps = 50/309 (16%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKINGELE 73
           +      L       +++  +   S  + T  +    +T+ ++SK    L+ +     L 
Sbjct: 1   MKKKKLFLGTIISCVVLALSACGSSDNVVTSKVGN--VTEKELSKE---LRQKYGESTLY 55

Query: 74  KIAVQE-LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           ++ + + L+ +     E  K  +    + +   F       GL  ED             
Sbjct: 56  QMVLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKATLEQLGLKNED------------- 102

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             K+ +  +  +   +K     K      +       +                      
Sbjct: 103 ELKEKMKPEIAFEKAIKATVTEKDVKDNYKPEMKVSHILVKD------------------ 144

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK 251
                 +K  K+ +E            ++++         G+           +F+    
Sbjct: 145 ------EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAY 198

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY----VK 306
           K      + P  T  G   I + DK++L     +K  +       +++    ++    V 
Sbjct: 199 KLDAGQVSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVN 258

Query: 307 KLRSNAIIH 315
           +L  +A I 
Sbjct: 259 ELLKDADIK 267


>gi|148655481|ref|YP_001275686.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseiflexus sp.
           RS-1]
 gi|148567591|gb|ABQ89736.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseiflexus sp.
           RS-1]
          Length = 337

 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/290 (10%), Positives = 82/290 (28%), Gaps = 28/290 (9%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKING-----------ELEKIAVQELIVETLKKQEIE 91
              ++   +T  ++ +RI  ++                 ++E+  V + I + L      
Sbjct: 26  VARVDNVTLTRQELDQRIDRIEKGFAQQAGMGFPLPSRLDIERELVSQFIDQQLTLGLAR 85

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
           + GIT     VN    +  +   +          ++ +G            +   + +  
Sbjct: 86  QRGITVSDGEVNDQIERFRQQIQMGGGMSLEQAIQEQLGLPGEASPEFRLFVTYFLARQK 145

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                 +          ++   T R   + TV   +   + + +  +++          +
Sbjct: 146 LGETLVSENDIRQRITDEVMADTQRMVDVATVAHILVATEDEAKQVIER--------LDK 197

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK--SQNNTTN-PYVTQKGV 267
                +  ++ +       + G  + +      P+F   + +      TT  P  TQ G 
Sbjct: 198 GEAFADLAKELSQDPGSANNGGVYENIQRGQFVPEFDKAMFEDLQPGETTKTPVQTQFGW 257

Query: 268 EYIAICDKRDLGGEIALKAY--LSAQNTPTK---IEKHEAEYVKKLRSNA 312
             I +  +          A   +  +         +      ++  R  A
Sbjct: 258 HVIRLVSRGQAPALDPADAQAVIEQRVAQELPFEQQTAFERLLQSEREKA 307


>gi|238024223|ref|YP_002908455.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase
           [Burkholderia glumae BGR1]
 gi|237878888|gb|ACR31220.1| Putative PpiC-type peptidyl-prolyl cis-trans isomerase
           [Burkholderia glumae BGR1]
          Length = 319

 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/289 (8%), Positives = 62/289 (21%), Gaps = 55/289 (19%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS 99
             +   +NG  IT   + +   +   Q     +      +LI   L +Q    +      
Sbjct: 72  EGVVARVNGVAITRDQLEQA-RVAANQPDTASVRAALKNQLITRELLRQAAASAHYDT-- 128

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
                                               +     ++    +++    +    
Sbjct: 129 ----------------------------YPQVLAAVEQAKSLAMTQAWLRDHIKPEPVTD 160

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
                   + +  +   E   R ++     +       +++                   
Sbjct: 161 AEVKAKYDEVVAGLGQTELKPRVIVLKDRASADAALAQLKQ-----------GADFAQLA 209

Query: 220 EKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-----------NNTTNPYVTQKGVE 268
            + A   +    G   ++      P                       T+ P        
Sbjct: 210 RQAADGPNAAQGGALNWVSFRQPVPPGGQQGWPQPLAEALLKLPVGGVTSAPVEADGRFW 269

Query: 269 YIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            + + +KR   +      K  L        ++K   E +  L   A I 
Sbjct: 270 ILRVDEKRATRIPAYADAKDVLRRGLEQAALQKATIETMVGLLKQAQIQ 318


>gi|328956331|ref|YP_004373664.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Coriobacterium
           glomerans PW2]
 gi|328456655|gb|AEB07849.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Coriobacterium
           glomerans PW2]
          Length = 404

 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/347 (12%), Positives = 99/347 (28%), Gaps = 35/347 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           +   V  ++  F  LL+   +     +    + KS+ ++  +  T+NG  I +  I+++I
Sbjct: 36  IVKIVLVAIGVFAMLLSVTTMACAGIMNQAKTKKSYELTGGVAATVNGVNIKEDSITEQI 95

Query: 61  ALLK-----------------LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
              K                   +   EL K  ++ L  + L +   +K  IT   + +N
Sbjct: 96  MQTKEGGKYDTDEKWAKYLVDSNQTPEELRKTKIKSLAKQYLIEDAEKKHDITVSDDELN 155

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
             +    +                        +     S+    +K +   +    + +I
Sbjct: 156 DDWKDQVKKYDSEQAFIDQIKK--MGMTEASYKSSIRNSLMQKKLKEEVAPEKDPSDQDI 213

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQ--NQGFVQKRIKDAEESRLRLPKDCNKLEK 221
                K  +          +LF I     +  +    +K     ++         +  EK
Sbjct: 214 IDYVNKDISKYNDARRSSNILFKIESGADEQSDAKVKEKAQGVLDKINSGELTFEDAAEK 273

Query: 222 FASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIA-------- 271
           ++         G   +   +    ++Q+     + +  +    +  G   I         
Sbjct: 274 YSEDDGSKKDKGDVGWDKLTTFVKEYQDALNNLAADQVSGLVKSTYGYHIIRCTGYFHVD 333

Query: 272 --ICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             +     +     +K  +S         K    +   L   A I  
Sbjct: 334 GTVNSIDQIP--KNMKEKISDTIKKDSSSKAYTAWEDDLVDKADIKI 378


>gi|228945944|ref|ZP_04108286.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228813692|gb|EEM59971.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 288

 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/312 (9%), Positives = 86/312 (27%), Gaps = 48/312 (15%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKIN 69
            + +L      L       +++  +   S  + T  +    IT+ ++SK +         
Sbjct: 2   RYFELKKKKLFLGTIISCVVLALSACGSSDNVVTSKVGN--ITEKELSKELR-------- 51

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
            +  +  + ++++      + + S                     +     S+       
Sbjct: 52  QKYGESTLYQMVLSKALLDKYKVSDEEAKKQVEE-------AKDKMGDNFKSTLEQVGLK 104

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
            ++  K+ +  +  +   +K     K      +       +                   
Sbjct: 105 NEDELKEKMKPEIAFEKAIKATVTEKDIKDNYKPEMKVSHILVKD--------------- 149

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQN 248
                    +K  K+ +E            ++++         G+           +F+ 
Sbjct: 150 ---------EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEE 200

Query: 249 LLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY--- 304
              K      + P  T  G   I + DK++L     +K  +       +++    ++   
Sbjct: 201 AAYKLDAGQVSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQ 260

Query: 305 -VKKLRSNAIIH 315
            V +L  +A I 
Sbjct: 261 VVNELLKDADIK 272


>gi|229918171|ref|YP_002886817.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Exiguobacterium sp.
           AT1b]
 gi|229469600|gb|ACQ71372.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Exiguobacterium sp.
           AT1b]
          Length = 333

 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/303 (10%), Positives = 79/303 (26%), Gaps = 35/303 (11%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
               ++         +       +    T  G  IT G+I     +   + +     +  
Sbjct: 26  AIALIIGAGGTYAATNAGGGESDNSAVVTYKGGEITRGEI---ADMSYDRMVPQLAFQET 82

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           +  L+ +        + G   D   V+  F +         E   +       G   FK+
Sbjct: 83  MNALLEK--------EYGDQVDQEKVDEEFSKTEEQFNSEEEFEQAIQQAGMSGTEEFKE 134

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
            L  Q +          +    +E +                       ++         
Sbjct: 135 ALRGQMLVDAAKSKLVDVTDEEIEAQFAKE-------------------NVEVEASHILV 175

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ- 254
             ++  +D  +            ++ ++        G+  +     + P+F+    K   
Sbjct: 176 ETEEEAQDIIKELNDGADFAELAKEKSTDTGSGEKGGELGFFSAGAMVPEFEEYAFKEDV 235

Query: 255 -NNTTNPYVTQKGVEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEKH-EAEYVKKLRSN 311
               + P  +Q G   I + D+++   +    K  +  +    K       +   +L   
Sbjct: 236 VGKISEPVQSQFGFHVIKVTDRKEKDLKLEDEKDRIREELAAEKSASVDANKIYAELIEK 295

Query: 312 AII 314
             +
Sbjct: 296 YNV 298


>gi|269792688|ref|YP_003317592.1| hypothetical protein Taci_1078 [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100323|gb|ACZ19310.1| hypothetical protein Taci_1078 [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 340

 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/328 (9%), Positives = 99/328 (30%), Gaps = 22/328 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVS-YKSWAMSSRIRTTINGEVITDGDISKR 59
           M   +  ++   +  +   F++  F    +    +  +        ++G+ I    +  R
Sbjct: 2   MMQYLRNNVKGIMIGVVVVFIVSCFAGYGMYVRGRGSSGGDYPVAKLDGKKIMRSQVEMR 61

Query: 60  IALLKLQKIN-------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
           +  +  Q  +         + ++ + +++V     +  +  GI      V+ +       
Sbjct: 62  LREVAEQFGDRVTSGDVPMIRRMILDDIVVGMELTKAAKAEGIKVAKEEVDQYLASMQAQ 121

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
              + E +  +L + G+ +   ++ +        +++            E+       K+
Sbjct: 122 F-PTKEAYDEYLKRSGMTERELRRKVEENIAVGKLME-KVTASASVDAGEVRKFYDATKD 179

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
              +     TV       K   Q              L+     + +   +  + + +  
Sbjct: 180 AFFKRPEGYTVNVVAFRGKEAAQ--------RGRTRLLKGEAWDSVMGAMSGDLGNFTPY 231

Query: 233 K-AQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAI---CDKRDLGGEIALKAYL 288
               ++ + DL    ++++     + +N          + +    +K  +     +K  +
Sbjct: 232 DKPIFVSKKDLADDLKSVISLKVGSYSNLVKVGSDDYLMVLKRSNEKERVMAFDEVKEQI 291

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                  K  + +  YV  L   A +  
Sbjct: 292 EGVLLDQKRGQMQRAYVADLLKKAPLEI 319


>gi|330809635|ref|YP_004354097.1| peptidylprolyl isomerase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377743|gb|AEA69093.1| putative peptidylprolyl isomerase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 314

 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/241 (8%), Positives = 65/241 (26%), Gaps = 9/241 (3%)

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA-- 139
            E           +               R              +        ++     
Sbjct: 58  DELKALLAALAPEVRQQMRGNRAALEGWIRARLAEKAVLEQADAQGWRERPEVERQTRAA 117

Query: 140 -IQSIWPDVVKN--DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
             Q ++ D +++       Y + +    A      N T       + +F         + 
Sbjct: 118 AEQIVFRDYLQSVSQVPAGYPSEDELKQAYDAGKANWTAPALYRVSQIFLATTEPQTVEA 177

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDL-HPQFQNLLKKSQ 254
             ++ ++ +++++    +      +F+         G + +     L  P  + + +   
Sbjct: 178 VRRQALELSKKAQASPAEFGALASRFSQDRSSAERGGDSGFQPLQQLVPPVRETVARLKV 237

Query: 255 NNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
              ++P  +  G   I + +++         ++  L+      + E+    Y+  +   A
Sbjct: 238 GAVSDPVQSPAGFHVIKLTEQQPAREATLDDVRERLTQALRAQRQEQIAKAYLDGMLDTA 297

Query: 313 I 313
            
Sbjct: 298 T 298


>gi|73541086|ref|YP_295606.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
           JMP134]
 gi|72118499|gb|AAZ60762.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
           JMP134]
          Length = 264

 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 50/175 (28%), Gaps = 16/175 (9%)

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           V  D++  +G  + E+     K+K+              +           + +      
Sbjct: 99  VFEDYVKTHGASDDELRKQYDKIKSQFGNGKEYHVRHILVEKEADAKAIIAKIK------ 152

Query: 208 SRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQ 264
                 K  +  +  +       + G   +       P+F   +    +   T+ P  TQ
Sbjct: 153 ---GGAKFEDMAKASSKDPGSAANGGDLDWANSGSYVPEFSAAMTTLKKGQMTDTPVKTQ 209

Query: 265 KGVEYIAICDKRDL--GGEIALKAYLSAQNTPTK--IEKHEAEYVKKLRSNAIIH 315
            G   I + D RD        +K  L       +    +     +K L+  A I 
Sbjct: 210 FGWHIIELVDTRDAKIPSFEEVKPQLMQMMMGDQNWQREQFQAMMKSLKDKAKIQ 264


>gi|327479988|gb|AEA83298.1| NifM protein, putative a peptidyl-prolyl cis/trans isomerase
           [Pseudomonas stutzeri DSM 4166]
          Length = 292

 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/255 (14%), Positives = 79/255 (30%), Gaps = 8/255 (3%)

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
             +   + E+I  ++L +E       E  G+      V   + + A             L
Sbjct: 31  SSQQREQAERIVGRQLQLENAVLHSAEACGVVIPDEQVADAWAEIAARYEDPLALHK-AL 89

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT--VREYLIRT 182
           D  G+ +   +Q LA +     V++          + E+                 L R 
Sbjct: 90  DDSGLDEAGLRQLLARELKVETVLQRVCAGLPEITDTEVSLYYFNHPERFVRPATRLARQ 149

Query: 183 VLFSIPDNKLQNQGFVQ--KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           +L ++ ++  +N       +    AE    +  +   +  K +     +  G    +   
Sbjct: 150 ILITVNEDFPENSRTSAWRRINLIAERLLRKPQRFAEQALKHSECPSAMEGGSLGLIRPG 209

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKI 297
            L+PQ +  L             T  G   +   +    G      +  +L  +    + 
Sbjct: 210 VLYPQLEACLFALRAGEIGPVVETPLGFHLLFCEEIHPAGHLSLQEVLPHLREKLRARQY 269

Query: 298 EKHEAEYVKKLRSNA 312
           E+H+  ++  L  +A
Sbjct: 270 ERHQRAWLAGLLQSA 284


>gi|34498387|ref|NP_902602.1| signal peptide protein [Chromobacterium violaceum ATCC 12472]
 gi|34104241|gb|AAQ60600.1| probable signal peptide protein [Chromobacterium violaceum ATCC
           12472]
          Length = 262

 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/299 (10%), Positives = 77/299 (25%), Gaps = 50/299 (16%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ-----KINGELEKIAVQE 79
              + + +  S  +++     +NG  I   ++   +  +        + + EL +     
Sbjct: 6   IAALTLAASISLPVAAESIAVVNGVSIDKSELDAAVTNVVQSSGGKMQDSPELREQLKNS 65

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           LI   L  QE  + G+                                          + 
Sbjct: 66  LIGRQLILQESTRRGLDKQPAFAKR------------------------------MDEVR 95

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
            + +   +  +                 +    +   + +    +              +
Sbjct: 96  AELLRDALFADIAEKANVGDAQIKARYDEMAAQVAGSKEVHAYQITLGS----------E 145

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHD-VSIGKAQYLLESDL-HPQFQNLLKKSQNNT 257
              +       +  K    ++  +   +   S G   +   S +     + L    +   
Sbjct: 146 ADAQKVIAQLKKGAKFDELVKTRSIDPNAKQSGGDMNWGNLSRMEPKLAEALKAIPKGQV 205

Query: 258 T-NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +  PY +Q G     + D R+          +  Q      E+  A+ V+ LR+ + I 
Sbjct: 206 SSAPYQSQLGWHVFKVADIRNAQV--PPLDAVKPQIARQLQEEAIAKAVEDLRAKSKIQ 262


>gi|289423524|ref|ZP_06425325.1| foldase protein PrsA [Peptostreptococcus anaerobius 653-L]
 gi|289156026|gb|EFD04690.1| foldase protein PrsA [Peptostreptococcus anaerobius 653-L]
          Length = 252

 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/278 (11%), Positives = 76/278 (27%), Gaps = 46/278 (16%)

Query: 43  RTTINGEVITDGDISKRIA----LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFD 98
              I  + IT  D+   I+      + Q  N E  K  + +LI + L   +  ++ +  D
Sbjct: 7   LAKIGDKEITAADVEAAISSIDPYQRQQFDNEEGRKRILADLINQELFYLDAIENKLDQD 66

Query: 99  SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGN 158
            N V    +                                   +      N  +     
Sbjct: 67  ENFVKEMELIKIN-------------------------------MIKQYAINKIIASVEV 95

Query: 159 LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
            + E     ++ K   V   ++      + +     +   +   K+            + 
Sbjct: 96  SDEEKLNYYEENKAQFVSPEMVSAKHILVDEEDQAKEIKTKIDKKEM--------SFEDA 147

Query: 219 LEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD 277
             +++    ++  G      +  + P+F+           + P  +Q G   I +   ++
Sbjct: 148 AVEYSKCPSNMKGGDLGEFGKGQMVPEFEEAAFALEVGKVSEPVKSQFGYHIIKVESHKE 207

Query: 278 LG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            G      +K  ++      K  +     + +L     
Sbjct: 208 EGQLEFEDVKDEVANAVAYKKQNEAFVGKLTELTDRYK 245


>gi|228938272|ref|ZP_04100886.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228971151|ref|ZP_04131783.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977759|ref|ZP_04138144.1| Foldase protein prsA 1 [Bacillus thuringiensis Bt407]
 gi|228781967|gb|EEM30160.1| Foldase protein prsA 1 [Bacillus thuringiensis Bt407]
 gi|228788577|gb|EEM36524.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228821408|gb|EEM67419.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326938780|gb|AEA14676.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 289

 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/304 (12%), Positives = 92/304 (30%), Gaps = 42/304 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S +I T+  G+ IT  +   ++          +  K 
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKIVTSKAGD-ITKEEFYDQMKT--------QAGKQ 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +++E +  +  +      D                   + F + + +QGI +   K
Sbjct: 52  VLNNMVMEKVLIKNYKVEDKDVDKKFD--------EMKKQYGDQFDTLMKQQGIKEETIK 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +  Q      V+     K    + E    + K  +I V++                  
Sbjct: 104 NSVRAQLAQEKAVEQSITDKDVKAKFEDYKKEIKASHILVKD------------------ 145

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              ++  K  ++   +        ++++         G   +     +  +F+   +K  
Sbjct: 146 ---EETAKKVKDELAQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGKMVKEFEEAAQKLK 202

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRSN 311
           +   + P  TQ G   I + D          KA +       K +  +   + + K    
Sbjct: 203 KGEVSEPVKTQFGYHIIKVTDNHADATFDKAKADIKKSLAQEKTQDAQFMNDLMMKEIKK 262

Query: 312 AIIH 315
           A + 
Sbjct: 263 ADVK 266


>gi|293391759|ref|ZP_06636093.1| SurA protein [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952293|gb|EFE02412.1| SurA protein [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 615

 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/392 (10%), Positives = 91/392 (23%), Gaps = 81/392 (20%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
             K+  + +++       F+ + F I  +  Y    + S     +NGE I+      +  
Sbjct: 3   MEKLHGASNNWASKFLFGFITVTFVISSMAGYLYSRIDSS-AAKVNGEEISQQAFQNQYN 61

Query: 62  LLKLQKING---------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF---VQH 109
           +                  L++  +  LI + L +Q ++   +      +          
Sbjct: 62  IASQNLSPQEADSPTVVANLKRQVLSSLIDQELLRQYVKDLKLGVSDERIKQEIVTTPSF 121

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK-------------------- 149
             N       +   L   GI    +  Y+        +                      
Sbjct: 122 QNNGKFDNVLYQQLLQSNGISAETYAGYVREALRLEQLQSGLGITAFTVPVQQEALAKLF 181

Query: 150 -------------NDFMLKYGNLEMEIPANKQKMKNIT---------------------- 174
                         D + K      EI A     K                         
Sbjct: 182 FQRRDVRLATLSLADEIAKQTVSAEEIQAYYDAHKADFTLPELVKVQYLDLSGANMEKNI 241

Query: 175 --VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA--------S 224
                 + +    +      Q Q  +       E+    L +      +F+         
Sbjct: 242 NISDVEIAQYYQDNKSQFMTQGQQRLAHIEVKTEQQAQDLYQQLQNGAEFSTLAKNHSID 301

Query: 225 KIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG--GE 281
            I     G   ++   +    F++          + P         I +  ++D      
Sbjct: 302 PISAEKGGDLSWVSAGEFPKVFEDAANALDVGKFSQPVKLDNSYHIILVEGRKDSAVLPL 361

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             ++  + AQ     +        K++   A 
Sbjct: 362 ERVRPQIVAQIRQNLVNNQFFSVEKRVAEKAF 393


>gi|218297017|ref|ZP_03497694.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermus aquaticus
           Y51MC23]
 gi|218242572|gb|EED09109.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermus aquaticus
           Y51MC23]
          Length = 603

 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/316 (7%), Positives = 71/316 (22%), Gaps = 26/316 (8%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK-RIALLKLQKINGELEKI 75
                 ++  I+            +    +NG+ + + D+ + +            L K+
Sbjct: 15  FLALAFVVGAILLFTPQAGQEAKGKPVLWVNGKAVYELDLLRLQGNDPLYAANPQGLLKV 74

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            V    +E +   E  K               +  R             ++      +  
Sbjct: 75  LVDTHFLEQVILTEALKQDAARIRVGSAEVRKEVDRIREQYGLRDKKAYEQFLNQIGYTD 134

Query: 136 QYLAIQSIWPDVVKND---FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             L  +      ++               E+    +  +     E  ++     + D K+
Sbjct: 135 AQLRAEIKAQLQIQKRLEQVRSSAKPTPEEVRFYFEVHQEDYKTEPRVQARQIVVDDKKV 194

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF------ 246
             +   + +                  +K++  +     G                    
Sbjct: 195 AEEVLAKAK---------AGEDFTALAKKYSK-VGAEQGGALGAAPGESAPKPVTKVVFP 244

Query: 247 ----QNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKH 300
               + +          P         + +       +     +K  +       K    
Sbjct: 245 EKVAEAVFALKGPGLVGPIEAGGRYYIVKVEAYLPPKVPTFEEVKDQVEKDAGDAKANGA 304

Query: 301 EAEYVKKLRSNAIIHY 316
              Y++ LR  A + +
Sbjct: 305 LEAYLEDLRKKAQVRF 320



 Score = 59.3 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/280 (11%), Positives = 70/280 (25%), Gaps = 39/280 (13%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS 99
           +    T+N   I    +   +  +   +    L +  + EL V+            T + 
Sbjct: 330 NPAVATVNEREILLSQV---LQPVFSNQQTAALIQQGLGELAVQFFL-------PQTLER 379

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
                  V  A+ +G                          +     ++           
Sbjct: 380 LVDQEILVGAAKKSG------------------KPFIGSKDEVAQAYLLYE--TRDVTAT 419

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
           E E      +             V     +          K  ++A      L       
Sbjct: 420 EAEARRFYAENPAFFTIPASAEVVGVVFQE------EAKAKAFREAALKASDLQALAKAH 473

Query: 220 EKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKG-VEYIAICDKRDL 278
               ++   V+ G+   +L+  +    +   K S    +     + G    + I +++  
Sbjct: 474 GGTVTEYGAVNPGQLPAVLDRLVFKVKEAFPKGSLGEVSEVVKLEDGTFTVLLIKNRKPE 533

Query: 279 --GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                 A+K          K ++     ++KLR  A +  
Sbjct: 534 ELKPFEAVKEEALEGVINRKRQEKAQALIQKLRQEAKVEN 573


>gi|53805225|ref|YP_113052.1| peptidyl-prolyl cis-trans isomerse D [Methylococcus capsulatus str.
           Bath]
 gi|53758986|gb|AAU93277.1| peptidyl-prolyl cis-trans isomerse D [Methylococcus capsulatus str.
           Bath]
          Length = 605

 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/254 (12%), Positives = 77/254 (30%), Gaps = 6/254 (2%)

Query: 66  QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
           Q     L +   + +       ++  ++     +      FV             SS  +
Sbjct: 129 QVKRALLMEQFQRGITDTAFVTRQQVEAFFRLKNQEREIEFVTVPLAKADEEVSESSIDE 188

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR--TV 183
                 + F+    +   +  +  +D   +    E E+    ++ K     E   +   +
Sbjct: 189 YYRSHPDEFQSPETVSVNYLLLSLDDVAKEVKPTEEELRNFYEEQKAGFTTEERRKVSHI 248

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDL 242
           L ++   K +++     +I+   E  L+        ++ +   +     G    + +  +
Sbjct: 249 LVTVDPAKPEDEAAALAKIRQIRERLLKGEDFAKLAKETSDDRVSAEKGGDLGVVTKGGM 308

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEK 299
            P F+      SQ   + P  T  G   I + +           +K  ++A       E 
Sbjct: 309 EPNFEKAALALSQGEVSEPVRTSFGYHLIKVTELTPATTKPYEQVKDEVAAGFRRNAAEN 368

Query: 300 HEAEYVKKLRSNAI 313
              +  +KL   A 
Sbjct: 369 RFYDLGQKLTEFAF 382


>gi|42781422|ref|NP_978669.1| peptidylprolyl isomerase [Bacillus cereus ATCC 10987]
 gi|42737344|gb|AAS41277.1| protein export protein prsA [Bacillus cereus ATCC 10987]
          Length = 283

 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/309 (10%), Positives = 89/309 (28%), Gaps = 48/309 (15%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K    +   II C+V  +S    +  + + + +    +T+ ++SK +          + 
Sbjct: 1   MKKKKLFLGTIISCVVLALSACG-SSGNVVTSKVGN--VTEKELSKELR--------QKY 49

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            +  + ++++      + + S                     +     S+        ++
Sbjct: 50  GESTLYQMVLSKALLDKYKVSDEEAKKQVEE-------AKDKMGDNFKSTLEQVGLKNED 102

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             K+ +  +  +   +K     K      +       +                      
Sbjct: 103 ELKEKMKPEIAFEKAIKATVTEKDVKDNYKPELKVSHILVKD------------------ 144

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK 251
                 +K  K+ +E            ++++         G+           +F+    
Sbjct: 145 ------EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEIAGFAPGQTVKEFEEAAY 198

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY----VK 306
           K      ++P  T  G   I + DK++L     +K  +       +++    ++    V 
Sbjct: 199 KLDAGQVSDPVKTTYGYHIIKVTDKKELKPFDEVKDDIRKDLEQQRLQDTTGKWKQQVVN 258

Query: 307 KLRSNAIIH 315
            L  +A I 
Sbjct: 259 DLLKDADIK 267


>gi|118477742|ref|YP_894893.1| peptidylprolyl isomerase [Bacillus thuringiensis str. Al Hakam]
 gi|118416967|gb|ABK85386.1| protein export protein [Bacillus thuringiensis str. Al Hakam]
          Length = 298

 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/312 (9%), Positives = 85/312 (27%), Gaps = 48/312 (15%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKIN 69
            + +L      L       +++  +   S  + T  +    IT+ ++SK +         
Sbjct: 12  RYFELKKKKLFLGTIISCVVLALSACGSSDNVVTSKVGN--ITEKELSKELR-------- 61

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
            +  +  + ++++      + + S                     +     S+       
Sbjct: 62  QKYGESTLYQMVLSKALLDKYKVSDEEAKKQVEE-------AKDKMGDNFKSTLEQVGLK 114

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
            ++  K+ +  +  +   +      K      +       +                   
Sbjct: 115 NEDELKEKMKPEIAFEKAITATVTEKDVKDNYKPEMKVSHILVKD--------------- 159

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQN 248
                    +K  K+ +E            ++++         G+           +F+ 
Sbjct: 160 ---------EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEE 210

Query: 249 LLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY--- 304
              K      + P  T  G   I + +K++L     +K  +       +++    ++   
Sbjct: 211 AAYKLDAGQVSEPVKTTYGYHIIKVTNKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQ 270

Query: 305 -VKKLRSNAIIH 315
            V +L  +A I 
Sbjct: 271 VVNELLKDADIK 282


>gi|149910316|ref|ZP_01898960.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
           [Moritella sp. PE36]
 gi|149806676|gb|EDM66643.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
           [Moritella sp. PE36]
          Length = 636

 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/409 (9%), Positives = 100/409 (24%), Gaps = 97/409 (23%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K           +    V++ F +  + SY     +     T+NG  I+   +  ++
Sbjct: 1   MLEKFREGSQGPGAKIILGAVIVTFALAGVSSYLGGGSNQS-AATVNGVDISTQALENQV 59

Query: 61  ALLKLQKI----------------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                    ++ + ++  LI + L +Q      ++     +  
Sbjct: 60  RTDRSRLESQQGESFAVRWEQPEFQNQVRQQSLNTLIAQNLLQQMTNDLALSIGDEKIRG 119

Query: 105 FFVQHARNTG---LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN----------- 150
           +             + E + S L + G+    F + L +      +              
Sbjct: 120 YIFAMQEFQTDGVFNDERYISLLRQNGMTPAQFVERLRVDFAQQQLTDALVNSEFSLPNE 179

Query: 151 ----------------------DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                  F       + E+ +  +  K               + 
Sbjct: 180 VKQLAALQNQQRELSQLIVPANKFAADIVVTDAEVNSYYEDSKAFFQTPQQASVDYILVD 239

Query: 189 DNKLQNQGFVQKRIKDAEESRL-----------------RLPKDCNKLEKFASKI----- 226
              +     +     +   +                       D +  ++ A  +     
Sbjct: 240 MKNISAGIELDADAAENYYNEHLSSYTQEDKRKVAHILVAFNDDESAAQEKAQDLLTQIQ 299

Query: 227 -----------------HDVSIGKAQYLLESDLHPQFQNLLKKSQNN---TTNPYVTQKG 266
                               + G+  +L +  + P F+      QN+   TT    +  G
Sbjct: 300 SGADFAELAKTSSDDTFSGENGGELDWLEKDIMDPAFETAAFALQNDGDVTTELVRSDFG 359

Query: 267 VEYIAIC--DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
              I +   +   +     +K  +  +    +   H  E  + L   A 
Sbjct: 360 FHIIKLLAVESGKVKAFTDVKTTIETRLKNEQAVSHFDELAETLAEQAF 408


>gi|289642554|ref|ZP_06474697.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Frankia symbiont of
           Datisca glomerata]
 gi|289507642|gb|EFD28598.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Frankia symbiont of
           Datisca glomerata]
          Length = 391

 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/313 (9%), Positives = 75/313 (23%), Gaps = 27/313 (8%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK---------ING 70
              +   IVP+V+      + R    + G V+T   +  R+ +L                
Sbjct: 26  IAGLALLIVPLVTGLPGNAAFR----VGGTVVTKDQLHDRVEVLSALYGIREPVGGSELE 81

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
           +  +   + + V  +      +  I     +      +       S +D           
Sbjct: 82  QFRRDIAKAVAVSKILDNAASERKIVIADKSARDTLTKMIDEQMGSGQDGQRAFTDLLAK 141

Query: 131 DNHFKQYLAIQSIWPDV---VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
               +  +  +         +  +          +         +        +  L +I
Sbjct: 142 LKVSENDVLDEVGRQQRTARLFQEVTAPAVATVTDDQLPSYYESHRADFAVPAQRHLRNI 201

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI-GKAQYLLESDLHPQF 246
                +    V +R                   + +      S  G   ++  S L  ++
Sbjct: 202 VVATREEADQVVRR-------ARDGADFAALAGETSLDESTRSSQGDLGFVTASQLDAEY 254

Query: 247 -QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAE 303
            +        +   P  T+ G     + + R         +K  +       +       
Sbjct: 255 AKAAFAVPVGSVFGPVQTRYGWNVGQVLEDRPASQPSFEQVKDQVRDALRSERAVATWRT 314

Query: 304 YVKKLRSNAIIHY 316
           ++      A + Y
Sbjct: 315 WLADRIRAADVEY 327


>gi|206967650|ref|ZP_03228606.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus AH1134]
 gi|206736570|gb|EDZ53717.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus AH1134]
          Length = 289

 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/304 (12%), Positives = 91/304 (29%), Gaps = 42/304 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S +I T+  G+ IT  +   ++          +  K 
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKIVTSKAGD-ITKEEFYDQMKT--------QAGKQ 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +++E +  +  +      D                   + F + L +QGI +   K
Sbjct: 52  VLNNMVMEKVLIKNYKVEDKDVDKKFD--------EMKKQYGDQFDTLLKQQGIKEETIK 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +  Q      V+     K    + E    + K  +I V++                  
Sbjct: 104 TGVRAQLAQEKAVEQSITDKDVKAKFEDYKKEIKASHILVKD------------------ 145

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              ++  K  ++   +        ++++         G   +     +  +F+   +K  
Sbjct: 146 ---EETAKKVKDELAQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGKMVKEFEEAAQKLK 202

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRSN 311
           +   + P  TQ G   I + D          K  +       K +  +   + + K    
Sbjct: 203 KGEVSEPVKTQFGYHIIKVTDNHADANFDKAKTDIKKSLVQEKTQDAQFMNDLMMKEIKK 262

Query: 312 AIIH 315
           A + 
Sbjct: 263 ADVK 266


>gi|198244647|ref|YP_002214406.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|197939163|gb|ACH76496.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
          Length = 623

 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/396 (10%), Positives = 101/396 (25%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     S+     +NG+ I+        
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL-IGGSNNYAAKVNGQGISRAQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEK------------ 92
              + +                     L +  +  LI E L  Q   +            
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 93  -----SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI---- 143
                     D    N  +       G++A+ ++  L  Q               +    
Sbjct: 120 AIFATPAFQVDGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 179

Query: 144 ---------WPDVVKNDFML------KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                       VV+   +       K    + E+ +   + K   +     R     + 
Sbjct: 180 TDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEE-----------------------------SRLRLPKDCNKL 219
              +Q            ++                             +  +        
Sbjct: 240 AATMQAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFATLA 299

Query: 220 EKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ ++ I    + G   +L ES   P+ +N   K +   +    +  G     + D +  
Sbjct: 300 KEKSTDIISARNGGDMGWLEESATVPELKNAGLKEKGQISGVIKSSVGFLVARLDDIQPA 359

Query: 279 GGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    ++  ++A+    K         +K+   A
Sbjct: 360 KVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDAA 395


>gi|251791833|ref|YP_003006553.1| peptidyl-prolyl cis-trans isomerase D [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533220|gb|ACS96466.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Aggregatibacter aphrophilus NJ8700]
          Length = 615

 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/392 (10%), Positives = 92/392 (23%), Gaps = 81/392 (20%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
             K+  + +++       F+ + F I  +  Y      +     +NGE I+      +  
Sbjct: 3   MEKLNGASNNWASKFLFGFISVTFVISSMAGYLYTRTDNS-AAKVNGEEISQHAFQNQYN 61

Query: 62  LLKLQKING---------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF---VQH 109
           +                  L++  +  LI + L +Q   +  +      +          
Sbjct: 62  IASRNLSPQEADSPAQVANLKRQILSSLIDQELLRQYTNELKLGVSDERIKQEIVTSPNF 121

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK-------------------- 149
             N       +   L   GI    +  Y+        +                      
Sbjct: 122 QNNGKFDNALYQQVLQTNGISAETYASYVREALRLEQLQGGLAITAFSVPAQRDALAKLF 181

Query: 150 -------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL------------ 184
                         D + K    + EI A     K        ++               
Sbjct: 182 FQRRNIRLANLSLADEIAKQTVTDAEIQAYYDAHKADFTIPESVKVQYLDLSGANMEKNI 241

Query: 185 ---------------FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK---- 225
                                  Q    +Q + +   +      ++       A      
Sbjct: 242 NITDVEIAQYYQDNKAQFTTQGQQRLAHIQVKTEQQAQDLYNQLQNGAAFADLAKNHSID 301

Query: 226 -IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG--GE 281
                  G   ++   +    F++     +    + P         I + +++D G    
Sbjct: 302 PTSAEKGGDLSWVSAGEFPKVFEDAANALAVGQYSQPVKLDNNYHIILVKERKDAGVLPL 361

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             +KA ++AQ     I        K++   A 
Sbjct: 362 ENVKAQIAAQIRQNLINNQFFSVEKRVAEKAF 393


>gi|307718672|ref|YP_003874204.1| basic membrane protein [Spirochaeta thermophila DSM 6192]
 gi|306532397|gb|ADN01931.1| basic membrane protein [Spirochaeta thermophila DSM 6192]
          Length = 346

 Score = 77.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/341 (14%), Positives = 112/341 (32%), Gaps = 37/341 (10%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-- 70
           ++L      +++  + P       A  +R++ T   EVIT       + LL+ Q      
Sbjct: 1   MRLWKIVLGVVVMGLFPAFGQIIDAPVARVKLT-KLEVITQRQFKADVELLEKQLGRELS 59

Query: 71  -ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN---TGLSAEDFSSFLDK 126
            E  K  +   I E L  Q  E+  ++     ++    Q+ ++        E       +
Sbjct: 60  LEERKQLLDARIGEILIYQAAEREYLSVTQEELSQAIAQYKQSVAPNVSDQEFQRLIESQ 119

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG----NLEMEIPANKQKMKNITVREYLIRT 182
            G+    F++ +  + I    +      +        E EI     +  +      ++R 
Sbjct: 120 GGMTWEQFQEQMKKRLIAEKYLYQKKGQEIQNVPAPSEEEIRRVYNENISNFTAPEMVRY 179

Query: 183 VLFSIPD---NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLL 238
               I     +  + +    + ++  +E    L K    +EK++         G   YLL
Sbjct: 180 SHIFIDTRGLSDEEKKKAYNRALQVKKEVDGSLAKFREAVEKYSDDQASRYQGGDVGYLL 239

Query: 239 ESDLH-------PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL-----------GG 280
            +D           F  +     N  ++   +  G   + + +  +              
Sbjct: 240 RTDKQRESFLGKEFFSKIFSLPLNKVSDVLASNVGYHIVVVTEHHEPRLLGLDDRLLPNS 299

Query: 281 EIALKAYLSAQNTPTKIEKHEAE----YVKKLRSNAIIHYY 317
           +  ++  ++A     K ++   +     +++LRS A +  Y
Sbjct: 300 KQTVRDQITALLVGQKRQEAYQKALQKLIEELRSQADVSIY 340


>gi|254520547|ref|ZP_05132603.1| ppic-type ppiase domain-containing protein [Clostridium sp.
           7_2_43FAA]
 gi|226914296|gb|EEH99497.1| ppic-type ppiase domain-containing protein [Clostridium sp.
           7_2_43FAA]
          Length = 248

 Score = 77.4 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 80/277 (28%), Gaps = 38/277 (13%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
           M  +I  TI G+ I + D+   I      K        A ++L+ + +  + I   G   
Sbjct: 1   MEDKILVTIAGKEIKESDLQNMIMKYPADKRAYFETVEAKKQLLEQMVSFELINMLGKEL 60

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
           +      +                                 A   I   +  N  +L+  
Sbjct: 61  NIQDTEEY---------------------------KENVRQAENDILTQLTLNKLLLEVT 93

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             + +        K    ++  +      +   +L ++   +           +      
Sbjct: 94  VTDEDALNYYNNNKGEFTQQPTVSAKHILVDSKELCDKIKSE--------IDSKELTFEE 145

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR 276
              K+++       G         + P+F++   K   N  + P  TQ G   I + DK 
Sbjct: 146 AAMKYSTCPSKEEGGNLGAFGRGMMVPEFEDEAFKLDINVVSEPVKTQFGYHLIKVEDKN 205

Query: 277 D--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           +        +KA +  +      ++   + VK+L   
Sbjct: 206 EGREMPFEEIKAQIVNKLLQEMQQRKYLDVVKELEKK 242


>gi|228985422|ref|ZP_04145581.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228774375|gb|EEM22782.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 288

 Score = 77.4 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/313 (12%), Positives = 92/313 (29%), Gaps = 50/313 (15%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKIN 69
            + +L      L       +++  +   S  + T  +    +T+ ++SK    L+ +   
Sbjct: 2   RYFELKKKKLFLGTIISCVVLALSACGSSDNVVTSKVGN--VTEKELSKE---LRQKYGE 56

Query: 70  GELEKIAVQE-LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             L ++ + + L+ +     E  K  +    + +   F       GL  ED         
Sbjct: 57  STLYQMVLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKATLEQLGLKNED--------- 107

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                 K+ +  +  +   +K     K      +       +                  
Sbjct: 108 ----ELKEKMKPEIAFEKAIKATVTEKDVKDNYKPEMKVSHILVKD-------------- 149

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQ 247
                     +K  K+ +E            ++++         G+           +F+
Sbjct: 150 ----------EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFE 199

Query: 248 NLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY-- 304
               K      + P  T  G   I + DK++L     +K  +       ++++   ++  
Sbjct: 200 EAAYKLDAGQVSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQETTGKWKQ 259

Query: 305 --VKKLRSNAIIH 315
             V +L  +A I 
Sbjct: 260 QVVNELLKDADIK 272


>gi|315634906|ref|ZP_07890188.1| peptidyl-prolyl cis-trans isomerase [Aggregatibacter segnis ATCC
           33393]
 gi|315476458|gb|EFU67208.1| peptidyl-prolyl cis-trans isomerase [Aggregatibacter segnis ATCC
           33393]
          Length = 615

 Score = 77.4 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/392 (8%), Positives = 95/392 (24%), Gaps = 81/392 (20%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
             K+  + +++       F+ + F I  +  Y    + +     +NGE I+      +  
Sbjct: 3   MEKLHGASTNWASKFLFGFITVTFVISSMAGYLYTRVDNS-AAKVNGEEISQQAFQNQYN 61

Query: 62  LLKLQKING---------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQHA 110
           +                  L++  +  LI + L +Q   +  +      +          
Sbjct: 62  IASRNLTPQEIDSPAQVANLKRQVLASLIDQELLRQYANELKLGVSDARIKQEIVTTPTF 121

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK--------------------- 149
           +N G           +              +++  + ++                     
Sbjct: 122 QNNGKFDNTLYQQTLQNNGISAETYAGYVREALRLEQLQSGLGTTTFSVPAQQEKLTKLF 181

Query: 150 -------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL------------ 184
                         + + K    + EI A     K        ++               
Sbjct: 182 FQSRQIRLANLSLANEIAKQEVSDEEIQAYYDAHKAEFTIPETVKVQYLDLSGAAMENNI 241

Query: 185 ---------------FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK---- 225
                                  Q    +Q + +   +   +  ++       A      
Sbjct: 242 NITDVEIAQYYQDNKPQFTTQGQQRLAHIQVKTEQQAQELYQQLQNGANFADLAKNHSID 301

Query: 226 -IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL--GGE 281
                  G   ++   +    F++     +    + P         I + ++++      
Sbjct: 302 PTSAERGGDLSWVSAGEFPKVFEDAANALAVGQYSQPVNLDNHYHIILVEERKEPQLQPL 361

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            ++KA ++AQ     +        K++   A 
Sbjct: 362 ESVKAQIAAQIRQNLVNTQFYSIEKRVAEKAF 393


>gi|264677817|ref|YP_003277723.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni CNB-2]
 gi|262208329|gb|ACY32427.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni CNB-2]
          Length = 632

 Score = 77.4 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/203 (11%), Positives = 49/203 (24%), Gaps = 8/203 (3%)

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
              G      +          N FKQ  A    +  +            E ++    ++ 
Sbjct: 201 AFAGKVQPTEAELKAFYEAHTNQFKQPEAATVEYVQLDLAAVQQGIVLSEDDLRTYYKEN 260

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH--- 227
                     R     I   K       +K    AE+   ++ KD     + A       
Sbjct: 261 AARLAGPEERRASHILINAAKDLPAAEREKAKAKAEQLLAQVRKDPKSFAQVAKANSQDP 320

Query: 228 --DVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL 284
               + G   Y     +   F+    K  Q + ++   +  G   I +   +        
Sbjct: 321 GSAANGGDLGYFGREAMVKPFEEAVFKMKQGDISDVVESDFGFHIIELTGIKQPKV--PS 378

Query: 285 KAYLSAQNTPTKIEKHEAEYVKK 307
              +  +      ++       +
Sbjct: 379 FEEMRPKLEADLKQQQAQRKFAE 401


>gi|332885976|gb|EGK06220.1| hypothetical protein HMPREF9456_00094 [Dysgonomonas mossii DSM
           22836]
          Length = 460

 Score = 77.4 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 96/272 (35%), Gaps = 16/272 (5%)

Query: 33  YKSWAMSSRIRTTINGEVITDGDISK-RIALL-KLQKINGELEKIAVQELIVETLKKQEI 90
           Y    +   I   +  E I   D+ K R+ +L + ++I G+   +  ++L V+ L   + 
Sbjct: 21  YAQNNVIDEIIWVVGDEAILKSDVEKVRLGMLSRGERIEGDPYCLIPEQLAVQKLFLDQA 80

Query: 91  EKSGITFDSNTVNYFFVQH----ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
           +   I   ++ VN    ++      N G   +             + +++ +  + +  +
Sbjct: 81  KIDSIEVPASAVNSQLSRYENNVIANLGSKEKAEEYLGSTMSQLRDEWREQIRNEYLVSE 140

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           V K+    K      E+     ++   ++        +  I +  +     + +      
Sbjct: 141 VKKSLVGKKTNLTPSEVRKYYAQLPKDSLPYIPTMVEVQIITNEPVIPLKDIDQVKDRLR 200

Query: 207 ESRLRL----PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTN 259
           +   R+             ++       + G+  ++  ++L P+F ++          +N
Sbjct: 201 DYTNRINSGTADFATLAIMYSEDPGSAPNGGELGFMGRAELLPEFSSVGFSLSDPKKVSN 260

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ 291
              T+ G   I + ++R   G+ A   ++  +
Sbjct: 261 IVETEYGFHIIQLIERR---GDRANFRHILLR 289


>gi|332529107|ref|ZP_08405071.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hylemonella gracilis
           ATCC 19624]
 gi|332041330|gb|EGI77692.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hylemonella gracilis
           ATCC 19624]
          Length = 647

 Score = 77.4 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/408 (10%), Positives = 90/408 (22%), Gaps = 106/408 (25%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +    ++  F +V I  Y       R+   +    IT G+     
Sbjct: 1   MFENLRKHNKILMA-VLVLLIVPSFVLVGIDGYTRMTQKDRVVAHVGKIEITQGEWDAAH 59

Query: 61  ------------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
                        L      +    +  ++ +I E + +Q    + +      +      
Sbjct: 60  RSETDRLRQMMPNLDARLLDSDAARRGVLERMIRERVLQQAALDAQLNVSDARLFQELQT 119

Query: 109 HA-------RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                        +  E + + L +QG+    F+  L        +              
Sbjct: 120 IPAISQLRNAQGKIDMEAYQALLARQGMSPAGFEAQLRADLAVNQIQSSVTGTAVQTNTS 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV----- 183
                                 D+  +    E ++ A  Q  + +       R       
Sbjct: 180 ADLALDAWLERREVQVARFTPADYATRVQVSEADLQAYWQANQGLFQAPEQARIEYIVLD 239

Query: 184 -----------------------------------LFSIPDNKLQNQGFVQKRIKDAEES 208
                                                 I   K       QK  + A+  
Sbjct: 240 IDALRKEARVNEEDLRNYYEQNVDRLSGPEERRASHILITAAKDAPAAERQKAREQAQAL 299

Query: 209 RLRLPKDCNKL---------EKFASKI-HDVSIGKAQYLLESDLH-PQFQNLLKKSQNNT 257
              L K               K +         G   Y     +  P  +      Q   
Sbjct: 300 LAELRKAPANAQAKLFAELARKHSQDPGSASRGGDLGYFGRKAMTLPFEEAAFALKQGEL 359

Query: 258 TNPYVTQKGVEYIAICDKRDLGGEI--ALKAYLSAQNTPTKIEKHEAE 303
           ++   T  G   I +   +    +    L+  L A+    + +   AE
Sbjct: 360 SDVVETDFGYHVITVTGIKKPKAKTYAELRPSLEAEIRSQQAQTRYAE 407


>gi|269958291|ref|YP_003328078.1| hypothetical protein ACIS_00053 [Anaplasma centrale str. Israel]
 gi|269848120|gb|ACZ48764.1| hypothetical protein ACIS_00053 [Anaplasma centrale str. Israel]
          Length = 403

 Score = 77.4 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 91/280 (32%), Gaps = 14/280 (5%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA---LLKLQKINGEL 72
           +  Y V      V +VS+  +A S RI+  ++G+ IT  D+S+R             G  
Sbjct: 1   MLRYLVYCCTLCVVLVSHNCYASSVRIKAVVDGKAITSLDVSRRAQANAFFYKTAHAGSD 60

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               +Q L+ E++ + E ++ G++   + +     +     G+  E        Q   D 
Sbjct: 61  RNEVLQSLVDESMLELEAKELGMSVSKHELEAEAGKLFSVLGVCDELDIGECAAQNGLDY 120

Query: 133 HFKQYL-AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
              +     + IW  ++           + ++     + K+  +   L    +F      
Sbjct: 121 KSVENHLRSRVIWSKMLAARVAPFLAVSDSDVENYVDEAKSAGLETVLDMEQVFVPFKAG 180

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
                 + +  K    +  ++     +   +A +              + L     +L++
Sbjct: 181 RVLDSVLSELNKGV--ALDKIAARYREHAVYADRA-------VGVTASAFLPDVKASLVR 231

Query: 252 KSQNNTTNPYVTQKGVEYIAICDK-RDLGGEIALKAYLSA 290
                   P    +G   + +  K +   G +   A +  
Sbjct: 232 AKVGQVIGPVRIDRGYLVLKLLSKVKVGKGFLNSSASIKR 271


>gi|254715206|ref|ZP_05177017.1| Chaperone surA precursor [Brucella ceti M13/05/1]
 gi|261216924|ref|ZP_05931205.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
           M13/05/1]
 gi|260922013|gb|EEX88581.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
           M13/05/1]
          Length = 311

 Score = 77.4 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/280 (10%), Positives = 78/280 (27%), Gaps = 40/280 (14%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             ++NG  I + DI         +     L   A    + E L ++              
Sbjct: 51  AVSVNGVTIDEADILTEAQNHPAENPGAALFSAARALAVRELLLQRAR------------ 98

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                ++ +   D   +      ++   V++ +  +       E
Sbjct: 99  ------------------EIGIEPEHEKDAEGRAETDEDALVRMVIEREVDV-PSASRDE 139

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE-- 220
                +  ++      ++      I  +    +     R      +   + +        
Sbjct: 140 AQRYYENNRHRFTSAPILEASHILIAADPADQETRDAARQTATRLAAAVIAEPATFASVA 199

Query: 221 -KFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN--PYVTQKGVEYIAICDKR- 276
            +++S       G    L      P+F+  L++     T   P  ++ G   + + D+R 
Sbjct: 200 LEYSSCPSGAQGGNLGQLTRGSTVPEFERALERMTPGETTANPIESRFGYHIVRL-DRRV 258

Query: 277 --DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             +      +   ++     +   K  ++Y+  L + A I
Sbjct: 259 EGEELPFDYVADKIAGWLEASTWSKAVSQYIAILAAEAEI 298


>gi|157369342|ref|YP_001477331.1| peptidyl-prolyl cis-trans isomerase D [Serratia proteamaculans 568]
 gi|157321106|gb|ABV40203.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Serratia
           proteamaculans 568]
          Length = 627

 Score = 77.4 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/399 (10%), Positives = 103/399 (25%), Gaps = 88/399 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + +  +  +    +++ F +  +VSY+  A        +NG+VI    + +  
Sbjct: 1   MMDNLRAAANHVVLKIILGLIILSFLLTGVVSYQGSAG--DYAAKVNGQVIERAQLEQAF 58

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                    ++   A+ +LI   L  Q  +K G++   + V  
Sbjct: 59  QSERSRMQQQLGDQFSALAGNEGYMQQMRHQALSQLIDNMLLDQYAKKLGLSVSDDQVKE 118

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                     N       +   + + G   ++F Q +  Q +   V++            
Sbjct: 119 AIRKAPYFQTNGQFDNAKYLDLISRMGYTADNFAQSMRQQLVNQQVIQAFGGSGFILPAE 178

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI- 187
                                     K    + E+     + KN  +    ++     + 
Sbjct: 179 AQDMTALVLQQRDVRLATLDLKALQAKQTVTDDELKDYYSQNKNSFIAPEQVKVSYIPMD 238

Query: 188 ------------------------------PDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
                                           N    Q   +       +   +      
Sbjct: 239 AAAMQDKVTVADADISAYYDQHKSSYGQPERKNYSVIQLKTEAEANAVLDELKKGGDFAT 298

Query: 218 KLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK- 275
             +  ++  I   + G+  +L       + +      +   +    +  G   I + D  
Sbjct: 299 LAKDKSTDIISRRTGGELGWLEPDTTADELKQANLTEKGQLSGVVKSSVGYLVIRLNDIA 358

Query: 276 -RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
              +     ++  ++ Q    K         +K+   A 
Sbjct: 359 PEKVKPLSEVRDAIAKQVKQEKAVDAYYALQQKVSEAAT 397


>gi|229155916|ref|ZP_04284017.1| Foldase protein prsA 1 [Bacillus cereus ATCC 4342]
 gi|228627523|gb|EEK84249.1| Foldase protein prsA 1 [Bacillus cereus ATCC 4342]
          Length = 288

 Score = 77.4 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/313 (12%), Positives = 92/313 (29%), Gaps = 50/313 (15%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKIN 69
            + +L      L       +++  +   S  + T  +    +T+ ++SK    L+ +   
Sbjct: 2   RYFELKKKKLFLGTIISCVVLALSACGSSDNVVTSKVGN--VTEKELSKE---LRQKYGE 56

Query: 70  GELEKIAVQE-LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             L ++ + + L+ +     E  K  +    + +   F       GL  ED         
Sbjct: 57  STLYQMVLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKATLEQLGLKNED--------- 107

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                 K+ +  +  +   +K     K      +       +                  
Sbjct: 108 ----ELKEKMKPEIAFEKAIKATVTEKDVKDNYKPEMKVSHILVKD-------------- 149

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQ 247
                     +K  K+ +E            ++++         G+           +F+
Sbjct: 150 ----------EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFE 199

Query: 248 NLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY-- 304
               K      + P  T  G   I + DK++L     +K  +       ++++   ++  
Sbjct: 200 EAAYKLDAGQVSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQETTGKWKQ 259

Query: 305 --VKKLRSNAIIH 315
             V +L  +A I 
Sbjct: 260 QVVNELLKDADIK 272


>gi|34498389|ref|NP_902604.1| peptidyl-prolyl cis-trans isomerase [Chromobacterium violaceum ATCC
           12472]
 gi|34104243|gb|AAQ60602.1| probable peptidyl-prolyl cis-trans isomerase [Chromobacterium
           violaceum ATCC 12472]
          Length = 242

 Score = 77.4 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 82/278 (29%), Gaps = 47/278 (16%)

Query: 44  TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            T+NG  I++  I+ ++               A+Q+LI+ TL  Q+ +  G+        
Sbjct: 3   ITVNGVEISEDMIASQLDHY---ADTPSPRDTAIQQLILHTLLIQQAKSEGLDVADE--- 56

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
                                                Q     ++ +   +   +     
Sbjct: 57  -------------------------------------QQAIQTLLDSKLQVPAIDEASCR 79

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
               +  +  +  E  + + +       L+      K     EE++    +     ++ +
Sbjct: 80  EFYDRYPERFSAGESAVASHILLPKGEGLEASLIKAKAEGILEEAQANPSRFAALAQEHS 139

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP--YVTQKGVEYIAICDKRDLG-- 279
           +       G         + P+F+  +  ++     P    TQ G   I +  + + G  
Sbjct: 140 TCPSGKQGGSLGQFGRGQMVPEFEQAVFSTEAGQITPHLVETQFGYHIIQVEQRAEGGKI 199

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           G   +K  L        + +   EY+  L S A I  Y
Sbjct: 200 GFDEVKERLQHYLADLAVNQAMHEYLNMLVSAAQISGY 237


>gi|229139028|ref|ZP_04267605.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST26]
 gi|228644383|gb|EEL00638.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST26]
          Length = 288

 Score = 77.4 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/313 (12%), Positives = 91/313 (29%), Gaps = 50/313 (15%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKIN 69
            + +L      L       +++  +   S  + T  +    +T+ ++SK    L+ +   
Sbjct: 2   RYFELKKKKLFLGTIISCVVLALSACGSSDNVVTSKVGN--VTEKELSKE---LRQKYGE 56

Query: 70  GELEKIAVQE-LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             L ++ + + L+ +     E  K  +    + +   F       GL  ED         
Sbjct: 57  STLYQMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQLGLKNED--------- 107

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                 K+ +  +  +   +K     K      +       +                  
Sbjct: 108 ----ELKEKMKPEIAFEKAIKATVTEKDVKDNYKPEMKVSHILVKD-------------- 149

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQ 247
                     +K  K+ +E            ++++         G+           +F+
Sbjct: 150 ----------EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEIAGFAPGQTVKEFE 199

Query: 248 NLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY-- 304
               K      + P  T  G   I + DK++L     +K  +       +++    ++  
Sbjct: 200 EAAYKLDAGQVSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQ 259

Query: 305 --VKKLRSNAIIH 315
             V +L  +A I 
Sbjct: 260 QVVNELLKDADIK 272


>gi|222095920|ref|YP_002529977.1| peptidylprolyl isomerase [Bacillus cereus Q1]
 gi|221239978|gb|ACM12688.1| protein export protein prsa [Bacillus cereus Q1]
          Length = 283

 Score = 77.4 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/309 (11%), Positives = 88/309 (28%), Gaps = 50/309 (16%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKINGELE 73
           +      L       +++  +   S  + T  +    +T+ ++SK    L+ +     L 
Sbjct: 1   MKKKKLFLGTIISCVVLALSACGSSDNVVTSKVGN--VTEKELSKE---LRQKYGESTLY 55

Query: 74  KIAVQE-LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           ++ + + L+ +     E  K  +    + +   F       GL  ED             
Sbjct: 56  QMVLSKALLDKYKVSDEEAKKQVEEAKDKMGDNFKSTLEQLGLKNED------------- 102

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             K+ +  +  +   +K     K      +       +                      
Sbjct: 103 ELKEKMKPEIAFEKAIKATVTEKDVKDNYKPEMKVSHILVKD------------------ 144

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK 251
                 +K  K+ +E            ++++         G+           +F+    
Sbjct: 145 ------EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEIAGFAPGQTVKEFEEAAY 198

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY----VK 306
           K      + P  T  G   I + DK++L     +K  +       +++    ++    V 
Sbjct: 199 KLDAGQVSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVN 258

Query: 307 KLRSNAIIH 315
            L  +A I 
Sbjct: 259 GLLKDADIK 267


>gi|34498008|ref|NP_902223.1| peptidyl-prolyl cis-trans isomerase [Chromobacterium violaceum ATCC
           12472]
 gi|34103863|gb|AAQ60223.1| probable peptidyl-prolyl cis-trans isomerase [Chromobacterium
           violaceum ATCC 12472]
          Length = 612

 Score = 77.4 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/385 (11%), Positives = 93/385 (24%), Gaps = 86/385 (22%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN 69
           +  +  +    V + F    + SY S A        +    I   D+ +    L+ Q  +
Sbjct: 8   NKTVIQVILGAVALTFVGFGVGSYSS-ATDDPYLVKVGKTKIYKRDLDRA---LEGQPSD 63

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF---FVQHARNTGLSAEDFSSFLDK 126
               + A++ LI + L   E    G     + +            N   SA+ +S FL  
Sbjct: 64  PATRQAALENLIRQELLLAEARDHGAAVSPDQLRKAIASIPAFQENGQFSAQRYSEFLKS 123

Query: 127 QGIGDNHFKQYLAIQSIWPDVVK---------------------------------NDFM 153
           +      F+  ++   +    +                                  +DF 
Sbjct: 124 RYPNPEAFEADISRDILLQSQLSSVAGTQFVSNTVVTRVAGLLGEGRELQPLVLKPSDFA 183

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRT-------------------VLFSIPDNKLQN 194
            +       I A              ++                     +    D    +
Sbjct: 184 SEVKTDAAAIKAYYDANAKRFSLPEQVKLDYVVLSQDALAQGIKVSDAEVQKYYDQHKAD 243

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLE--------------------KFASKIHDVSI--- 231
               Q+R      +  +  K   K +                    + A           
Sbjct: 244 LAGEQRRASHILLTVAKDAKPEQKAKVKAEAEAILKEVRVNPAKFAELAKAKSQDPGSAE 303

Query: 232 --GKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
             G   +     +   F + + K      ++   T+ G   I +   +    +  +K  +
Sbjct: 304 KGGDLGFFGHGMMVKPFDDAVFKMKPGQISDLVETEYGFHIIRLDAVKSQSLD-DVKGAV 362

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNAI 313
             +    K      E   KL   A 
Sbjct: 363 VDKLQKQKAAALFHEQAGKLNEIAY 387


>gi|229068702|ref|ZP_04202000.1| Foldase protein prsA 1 [Bacillus cereus F65185]
 gi|229078350|ref|ZP_04210914.1| Foldase protein prsA 1 [Bacillus cereus Rock4-2]
 gi|229177575|ref|ZP_04304953.1| Foldase protein prsA 1 [Bacillus cereus 172560W]
 gi|228605937|gb|EEK63380.1| Foldase protein prsA 1 [Bacillus cereus 172560W]
 gi|228705025|gb|EEL57447.1| Foldase protein prsA 1 [Bacillus cereus Rock4-2]
 gi|228714449|gb|EEL66326.1| Foldase protein prsA 1 [Bacillus cereus F65185]
          Length = 289

 Score = 77.4 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/304 (12%), Positives = 92/304 (30%), Gaps = 42/304 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S +I T+  G+ IT  +   ++          +  K 
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKIVTSKAGD-ITKEEFYDQMKT--------QAGKQ 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +++E +  +  +      D                   + F + + +QGI +   K
Sbjct: 52  VLNNMVMEKVLIKNYKVEDKDVDKKFD--------EMKKQYGDQFDTLMKQQGIKEETIK 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +  Q      V+     K    + E    + K  +I V++                  
Sbjct: 104 NSVRAQLAQEKAVEQSITDKDVKAKFEDYKKEIKASHILVKD------------------ 145

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              ++  K  ++   +        ++++         G   +     +  +F+   +K  
Sbjct: 146 ---EETAKKVKDELAQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGKMVKEFEEAAQKLK 202

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRSN 311
           +   + P  TQ G   I + D          KA +       K +  +   + + K    
Sbjct: 203 KGEVSEPVKTQFGYHIIKVTDNHADANFDKAKADIKKSLVQEKTQDAQFMNDLMMKEIKK 262

Query: 312 AIIH 315
           A + 
Sbjct: 263 ADVK 266


>gi|150389495|ref|YP_001319544.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus
           metalliredigens QYMF]
 gi|149949357|gb|ABR47885.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus
           metalliredigens QYMF]
          Length = 249

 Score = 77.4 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/277 (10%), Positives = 74/277 (26%), Gaps = 39/277 (14%)

Query: 41  RIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
            +   +  + IT  D+   +  L  Q       +   + L+ E + ++         +  
Sbjct: 5   NVLAVVGEKNITKQDVEALMKTLDPQMAMQLQSEDGQKRLVNELVNQELFYLLAKEENLE 64

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
             +                                     +++      N  +      +
Sbjct: 65  KEDA---------------------------YQADLEKMKENLLKQYAINKLLRDITITD 97

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            EI     + K    +   ++     +   +       + +                   
Sbjct: 98  SEITNYYTENKAQFEQPAQVQASHILVDSEEKAQGVLAELK---------EGLSFEEAAT 148

Query: 221 KFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
           K +S   +   G      +  + P+F+        +  + P  TQ G   I + D++   
Sbjct: 149 KHSSCPSNAKGGDLGLFAQGQMVPEFEEAAFNMEVDTVSEPVKTQFGYHIIKVVDQKPAQ 208

Query: 280 GEI--ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            +    +K  L+ Q    K +K   + ++ L+    +
Sbjct: 209 EKSLAEVKDQLNQQLLSQKQQKAYFDKIEALKGQFTV 245


>gi|71065176|ref|YP_263903.1| peptidyl-prolyl cis-trans isomerase [Psychrobacter arcticus 273-4]
 gi|71038161|gb|AAZ18469.1| possible peptidyl-prolyl cis-trans isomerase [Psychrobacter
           arcticus 273-4]
          Length = 343

 Score = 77.4 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/269 (11%), Positives = 74/269 (27%), Gaps = 9/269 (3%)

Query: 56  ISKRIALLKLQKIN--GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
           I K +A  +    N            L+   +  +      + +         V  A   
Sbjct: 61  IEKAMAEERSNHKNLIASSRDELPSVLVNGVMIDRTAIAQELQYHPAENKEDAVFLATQA 120

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
            +  E     +                ++I   + KN       N   E    +     +
Sbjct: 121 LVVRELLRLAVLSDSSLGESAWDEDEEKAISSLIDKNVKATTPNNAICERYYEQNITDFM 180

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL----RLPKDCNKLEKFASKIHDV 229
           T      R +L +        +  ++K   D  E                 + ++     
Sbjct: 181 TDPIMSARHILLACLPEDGDERLKLKKTAYDLIEQINADSNSTAALIELARQHSACPSKE 240

Query: 230 SIGKAQYLLESDLHPQFQNLLKKSQNNTTN-PYVTQKGVEYIAICDKRD--LGGEIALKA 286
             G    + +    P+F++ L K +      P  ++ G   + + +K+         + A
Sbjct: 241 QGGDLGVISKGQTVPEFESTLFKLETGIAPSPIESRYGFHIVEVLNKQPGIQMNYEQVSA 300

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            ++ + +     +   +Y+  L   A I 
Sbjct: 301 AIANKLSQQAFHQSLCDYLFTLTDEAEIQ 329


>gi|218848095|ref|YP_002454772.1| foldase protein PrsA [Bacillus cereus G9842]
 gi|218546226|gb|ACK98619.1| foldase protein PrsA [Bacillus cereus G9842]
          Length = 299

 Score = 77.4 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/311 (12%), Positives = 95/311 (30%), Gaps = 37/311 (11%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +   +K L    + +             + S       +   I+  ++  R+        
Sbjct: 1   MKSSVKRLIMTGLAVGSLTFVSGCSLFDSDSVEYAAKTDSGTISKDELYNRMV------- 53

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             ++ +  + ++I  T+ +++ + S    D                L +E  +SF D   
Sbjct: 54  -DKIGQRTLDDMITLTVLQKKYKVSDGEIDDEIKR-----------LKSEFGNSFNDFLS 101

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
               + ++ L        + +   +      + ++ A          ++  IR     + 
Sbjct: 102 QNGVNNEEQLKDVIKLDKLKQKLALEHLKIQDKDLKALY------EQKKPEIRVSHILVS 155

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQ 247
           D  L      +                 +  ++F+         G   Y  E D+   FQ
Sbjct: 156 DETLAKDIKSK---------IDSGEDFGSLAKEFSQDIATKEKGGDIGYFKEGDMVQAFQ 206

Query: 248 NLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH-EAEYV 305
           +  +K      + P  T  G   I + D++ L     +K  L ++    K+++      +
Sbjct: 207 DAARKLKVGEVSQPVKTDFGYHVIKLLDEKKLPSFEQMKPQLQSELISNKMDQAKINAEI 266

Query: 306 KKLRSNAIIHY 316
           +KL     I  
Sbjct: 267 QKLLDKDNIKI 277


>gi|332283513|ref|YP_004415424.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pusillimonas sp.
           T7-7]
 gi|330427466|gb|AEC18800.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pusillimonas sp.
           T7-7]
          Length = 340

 Score = 77.4 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 51/157 (32%), Gaps = 5/157 (3%)

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD-AEESRLRLPKD 215
              E++      K +  T  +Y +  +    P    +    ++K+  +  +++R      
Sbjct: 163 SQEELQAAYEANKAQFTTPAQYRVSQIFLVAPYQDAEAVAKMRKQAGELVKKARADKADF 222

Query: 216 CNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAIC 273
              +++ +         G   +     L P+ +  +    +   + P  +Q G   + + 
Sbjct: 223 AALVKEHSQDEATAARGGDTGWAPLQQLVPEIRTSVAALDKGAVSEPIQSQAGFHILKLV 282

Query: 274 DKRDLGGEI--ALKAYLSAQNTPTKIEKHEAEYVKKL 308
           D+R         ++  L       +       Y++ L
Sbjct: 283 DQRAPVTPELAQVQEQLREALRRQRKSTVAKAYLEGL 319


>gi|229017643|ref|ZP_04174536.1| Foldase protein prsA 1 [Bacillus cereus AH1273]
 gi|229023860|ref|ZP_04180344.1| Foldase protein prsA 1 [Bacillus cereus AH1272]
 gi|228737447|gb|EEL87958.1| Foldase protein prsA 1 [Bacillus cereus AH1272]
 gi|228743649|gb|EEL93756.1| Foldase protein prsA 1 [Bacillus cereus AH1273]
          Length = 276

 Score = 77.4 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 39/137 (28%), Gaps = 6/137 (4%)

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLH 243
                         +K  K+ +E            ++++         G+          
Sbjct: 124 HKPEMKVSHILVKDEKTAKEVKEKINNGEDFTTLAKQYSEDTGSKEQGGEIAGFAPGQTV 183

Query: 244 PQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEA 302
            +F+    K      + P  T  G   I + DK++L     +K  +       +++    
Sbjct: 184 KEFEEAAYKLDAGQVSEPIKTSYGYHIIKVTDKKELKPFDEVKDTIRKDLEQQRLQDATG 243

Query: 303 EY----VKKLRSNAIIH 315
           ++    +  L   A I 
Sbjct: 244 KWKQQVINDLLKEADIK 260


>gi|301632869|ref|XP_002945502.1| PREDICTED: peptidyl-prolyl cis-trans isomerase D-like [Xenopus
           (Silurana) tropicalis]
          Length = 638

 Score = 77.4 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/239 (7%), Positives = 59/239 (24%), Gaps = 10/239 (4%)

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             +  ++      +   K  +            +            S    +        
Sbjct: 225 QVLGGVLQSAFSTEGQFKLAMDALFQRREIQVARFNAQDFAGKVAPSDADLQTFYQSRTA 284

Query: 135 KQYLAIQSIWPDVVKND--FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                 ++    +V +           E ++    Q+ +     +   R     +   + 
Sbjct: 285 HFQQPEEASVEYLVLDLDAVRAGITLSEDDLRTYYQENRERLAGKEERRASHILVNATQD 344

Query: 193 QNQGFVQKRIKDAEESRLRLPK----DCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQ 247
                 +     A+E   ++ +         +K +       S G   +     +   F+
Sbjct: 345 APAQERETAKARAQELLAQVRQNPGGFAGIAKKNSQDSGSAPSGGDLGFFARGAMVKPFE 404

Query: 248 NL-LKKSQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAE 303
           +      + + ++   +  G   I + D +          +A L A+    + +    E
Sbjct: 405 DAVFSMQKGDVSDVVESDFGYHIIQLTDVKTPQPPSFEQARAKLEAELKQQQAQSQFTE 463


>gi|77164285|ref|YP_342810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus oceani
           ATCC 19707]
 gi|254434865|ref|ZP_05048373.1| PPIC-type PPIASE domain protein [Nitrosococcus oceani AFC27]
 gi|76882599|gb|ABA57280.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus oceani
           ATCC 19707]
 gi|207091198|gb|EDZ68469.1| PPIC-type PPIASE domain protein [Nitrosococcus oceani AFC27]
          Length = 304

 Score = 77.4 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/301 (8%), Positives = 80/301 (26%), Gaps = 31/301 (10%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELI 81
           ++I   +   S ++      +       V+T  D    +  +  Q               
Sbjct: 12  ILILSALVAFSARAAEPEEEVLIQYKDVVVTPADFQAELETIPEQ--------------- 56

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
                     ++ +      ++    +      L+ E     LD+        K      
Sbjct: 57  ---------YRANVAASGERIHQLLDKIFVYRVLAREAQEQGLDQNPEVQQELKLEKEEI 107

Query: 142 SIWPDVVKNDFMLKYGNLEME--IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
                + +        N + E       Q       +   ++     I   +   +   +
Sbjct: 108 LGKARLRQLRQQALADNPDFETLARERYQANPEKYQQPERVKVSHILIKTEERSEEEAKK 167

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYLLESDLHPQFQNLLK--KSQNN 256
              K  + +            +++     + + G   ++++      F+      +    
Sbjct: 168 LAEKVRQLALTEEKPFSELALEYSEDPSLEKNKGDLGFIVKGVTTKPFEEAAFALEQPGE 227

Query: 257 TTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            +    ++ G   I + +++         +K  L  +   T + +    ++ ++R+   I
Sbjct: 228 ISPVVKSRFGFHIIRLEERQAPKTKSFEEVKERLVEKIRETHLNQVVQTHLNQIRNAEGI 287

Query: 315 H 315
            
Sbjct: 288 Q 288


>gi|1480131|emb|CAA68024.1| nifM [Pantoea agglomerans]
          Length = 264

 Score = 77.4 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/259 (6%), Positives = 66/259 (25%), Gaps = 17/259 (6%)

Query: 56  ISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
           ++K++ L +         +  ++             +     +                 
Sbjct: 14  LAKQMKLSEELNPTPAQYQQFIEAW-----------QRQQVIEEAVAQAALEHALNIEPQ 62

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---FMLKYGNLEMEIPANKQKMKN 172
           S E     L  +               +   +++        +    +        +   
Sbjct: 63  SVEVTRQALAAELPELELTATETEELLLHQTLLREQLNWVQQQAPQPDDAQVEAWYRGHA 122

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
                   R     +   +  +    ++    A   R        +  +++     +  G
Sbjct: 123 QHFVRPEQRYTRHLLLTVEGNSPAVREQIDAIARRLRDGHALFARQALRYSHCPSAMGGG 182

Query: 233 KAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLS 289
              ++    L+PQ ++   +      ++P  T+ G   +     R      +      + 
Sbjct: 183 VLGWVGRGILYPQLEDTLFRLEAGQLSSPVETELGWHLLLCEQIRLPQPLPKAEALTRVR 242

Query: 290 AQNTPTKIEKHEAEYVKKL 308
            Q    +   ++ +++++L
Sbjct: 243 QQLIARQQNHYQRQWLQQL 261


>gi|300703976|ref|YP_003745578.1| peptidyl-prolyl cis-trans isomerase (rotamase d) [Ralstonia
           solanacearum CFBP2957]
 gi|299071639|emb|CBJ42963.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Ralstonia
           solanacearum CFBP2957]
          Length = 649

 Score = 77.0 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/282 (11%), Positives = 73/282 (25%), Gaps = 32/282 (11%)

Query: 52  TDGDISKRIALLKLQKINGE-------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           T      R+    + +   +       + K  V  LI    +++E++   +         
Sbjct: 149 TPEQFDARVRSELVLQQIPQSIVASAFVPKSLVDRLIDARDQQREVQALLLKPADYVSKV 208

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
                A      A      + +Q   +                   D M +      ++ 
Sbjct: 209 AVDDKAIQAYYDAHQQEFAVPEQVKAEYVVFS------------GEDMMKQIPVTPEQLK 256

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL----PKDCNKLE 220
               +       E   R     I               K AEE    +           +
Sbjct: 257 EYYDQNVARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEEVLAEVRKAPGNFAELAK 316

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKRD 277
           K++         G+  +L +    PQF++ L   K   + ++   +  G   I + + + 
Sbjct: 317 KYSGDPGSAAQGGELGFLAKGATVPQFESALFALKQPGDISDVVQSDFGFHIIKLEEVKG 376

Query: 278 ------LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                    +  L+  +  Q    K  +    +   +   + 
Sbjct: 377 GGVQSLEAVKPELEREVRTQLANKKYTELADAFSNGVEDQSD 418



 Score = 60.8 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/330 (9%), Positives = 88/330 (26%), Gaps = 38/330 (11%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   V T     + L+    V   F    +  Y  +   S     +   VIT  ++  R+
Sbjct: 1   MLDFVRTH-RRLMFLVLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDAVITTSELDARV 59

Query: 61  -------------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
                             Q    ++ +  +  +I + +   E  ++ ++   + V     
Sbjct: 60  REQTERLRQMLGGQYDPRQFEGPQMRRDVLDGIIQQRVMANEASRTNLSIADSKVRETIE 119

Query: 108 Q-------HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
           Q          +     + +   L  QG+    F   +  + +   + ++     +    
Sbjct: 120 QIPAVAQLRKPDGKFDTDAYIKLLAAQGMTPEQFDARVRSELVLQQIPQSIVASAFVPKS 179

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
           +       + +            L   P + +       K I+   ++  +      +++
Sbjct: 180 LVDRLIDARDQQRE------VQALLLKPADYVSKVAVDDKAIQAYYDAHQQEFAVPEQVK 233

Query: 221 KFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY-IAICDKRDLG 279
                     + K   +    L   +   + + +         ++     I + D     
Sbjct: 234 AEYVVFSGEDMMKQIPVTPEQLKEYYDQNVARFKTE-----EQRRAAHILIKLPDNAKPA 288

Query: 280 GEIALKAYLSAQNTPTK-----IEKHEAEY 304
            + A K          +       +   +Y
Sbjct: 289 DKDAAKKRAEEVLAEVRKAPGNFAELAKKY 318


>gi|238022941|ref|ZP_04603367.1| hypothetical protein GCWU000324_02862 [Kingella oralis ATCC 51147]
 gi|237865749|gb|EEP66887.1| hypothetical protein GCWU000324_02862 [Kingella oralis ATCC 51147]
          Length = 315

 Score = 77.0 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/316 (12%), Positives = 106/316 (33%), Gaps = 11/316 (3%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMS--SRIRTTINGEVITDGDISKRIALLKLQKIN 69
            +K   T  +L     +   +  +  +   +RI   +N  VIT  DI + +  LK +   
Sbjct: 1   MMKRQITPLILSATLGIAFQAAYADTIKPLNRIAMEVNSSVITYRDIERTVRELKSRNAG 60

Query: 70  GELEKI-----AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
             + +      A Q L+   L      +  +    + ++    + A     S E+     
Sbjct: 61  QNIPEEQFVQAAKQRLLERALIADAARQQQLKATPSGIDEELKRRAAAENTSVENLYKKA 120

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFML-KYGNLEMEIPANKQKMKNITVREYLIRTV 183
              G     ++  +A   +   ++ +        + ++                 +    
Sbjct: 121 QANGYTREAYRLEVAKDVLADYLLSDLNNNVNISDAQINEALKSGAALPQGTPYPVYTIR 180

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
              +      N   V+KR++   ++  +        ++++ +   V+ G    + +  L 
Sbjct: 181 RIILQAGNQANMSAVEKRMQQIAQAIQQGSDFATIAKRYSQEAEAVNGG-LHEVSDDMLP 239

Query: 244 PQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKHE 301
              +  + +   N  T P       + I +   R       ++   +  Q      + ++
Sbjct: 240 ENVEKLIHQMQPNQITAPQRVGTSWQIIQLVSSRTENDPAKMQREAVRRQLVQQARQANQ 299

Query: 302 AEYVKKLRSNAIIHYY 317
           A++V++L+ NA++  Y
Sbjct: 300 AQFVQQLQQNAVVREY 315


>gi|15603844|ref|NP_246918.1| hypothetical protein PM1979 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12722418|gb|AAK04063.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 626

 Score = 77.0 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/400 (9%), Positives = 87/400 (21%), Gaps = 88/400 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           +  K+    + ++       + + F +  I  Y  +         INGE I+     +R 
Sbjct: 2   LIEKLHGMTNSWVSKFLLGLIAVAFVLSGITGY-VFTRVDTSAVKINGEEISQQTFYQRY 60

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
                +                     L +  +  LI + L +Q  ++  I      V  
Sbjct: 61  ESESERLRQQLGAQFAALSGSPEFVAGLRQSVLNNLINQELLRQYADELKIGISDERVKQ 120

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN----------- 150
                    +        +   L   G+  + +   +        +              
Sbjct: 121 EIVTSQFFQQEGKFDNALYQRMLQLNGLTPDAYANIVREGLRLEQLQTGLAESEFIVPAQ 180

Query: 151 ----------------------DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                   + K    + E+ A  +  K   +   L +    ++ 
Sbjct: 181 QAQLTELFFQARTVRLAPFSLDQVLEKQTISDEEVSAYYEANKGAFLVPELAKVQYMTLT 240

Query: 189 DNKLQNQGFVQKRIKDAEESRLR-------------------------------LPKDCN 217
              ++    V            +                                     
Sbjct: 241 RADVEKHIQVSDVEIAQYYQDNKALYVSQGQQRLSHIQVATEAEAKEIYQALQDGANFAG 300

Query: 218 KLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK 275
                +  KI   + G   +         F+           + P         I + ++
Sbjct: 301 LASARSLDKISAENGGDLSWASAGTFPKAFEEAANALQVGQFSQPVKVDDQFHIILVTER 360

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           ++        +K  ++ Q     +        K+L   A 
Sbjct: 361 KEPSTLPLEVVKTQIADQIRQNLVNNQYFSIEKQLAEKAF 400


>gi|88857634|ref|ZP_01132277.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas
           tunicata D2]
 gi|88820831|gb|EAR30643.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas
           tunicata D2]
          Length = 274

 Score = 77.0 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/305 (9%), Positives = 82/305 (26%), Gaps = 36/305 (11%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K++     L+   I  +++      S+     +  +V+T  +++      +L   N  L
Sbjct: 1   MKIIIKKISLVTVLIGSVLTLGCSEPSNE-VAKVGEKVVTAQELANYFEFKRLDAKNTAL 59

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            + A ++ +      Q IE      D       F                          
Sbjct: 60  VESAKKQYLNNLALVQAIESQTEYSDEKLAFELF-------------------------- 93

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                +    +                +M     + + +  + +  +   +L   P +  
Sbjct: 94  ----EIKKDLLLNRYFNQYLEQVVTETDMRNYYAQNQEQYQSQQAKVSHILLRVNPADDE 149

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQN--L 249
             +     +  +A              +  +   +     G+  ++    +   F +   
Sbjct: 150 TTRQAKYSKAVEAYSKINTGSDFSVVAQSLSEDRVSAKKGGQLGWIKAGAIGATFSDTVF 209

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
            +      + P +T  G   I +   ++          +      +  +  +   + +L+
Sbjct: 210 NQLKAGQVSEPILTDFGYHVILLE--QEPKTVKRSFESVQGNIKRSLRKAAKDAELARLQ 267

Query: 310 SNAII 314
           S   I
Sbjct: 268 STVSI 272


>gi|299142782|ref|ZP_07035911.1| ppic-type ppiase domain-containing protein [Prevotella oris C735]
 gi|298575811|gb|EFI47688.1| ppic-type ppiase domain-containing protein [Prevotella oris C735]
          Length = 477

 Score = 77.0 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/296 (10%), Positives = 78/296 (26%), Gaps = 37/296 (12%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           V+I   ++   S      +  +  T+NG+ +   +                         
Sbjct: 7   VIISLAMLLCGSMAFSQSNDPVVMTVNGKPVLRSEFEYAYR------------------- 47

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
                     + +            + +   +  L  E   +                  
Sbjct: 48  ----------KNNSAGVIDRKSVAEYAELFIDYKLKVEAALAAQLDTLTSFQEEFAGCRD 97

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG-FVQ 199
           Q I P ++              I    Q   +       +R +L  +     ++    V+
Sbjct: 98  QQIRPSLIN---DADIEAEARRIYTLTQHQVDSLGGMVKVRHILLELGQRAPKSTETEVK 154

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESD-LHPQFQNLLKKSQNNT 257
           +RI    ++            K++       + G   +L     L        +  +   
Sbjct: 155 QRIDSIYKALKAGADFSEMARKYSDDKGSASAGGSLPWLQPGQTLPEFEAQAYRLKKGEM 214

Query: 258 TNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT-KIEKHEAEYVKKLRSNA 312
           + P+++  G   I + DK +     +L+  +          +K   + + + R+ A
Sbjct: 215 SLPFLSPAGYHIILLEDKSNFLPYDSLRNDILCFIDQRNLRDKLIDDRLNE-RAQA 269


>gi|91788924|ref|YP_549876.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp.
           JS666]
 gi|91698149|gb|ABE44978.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp.
           JS666]
          Length = 643

 Score = 77.0 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 45/160 (28%), Gaps = 8/160 (5%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                   E ++    ++           R     I   K  +    QK    AEE    
Sbjct: 243 VRKSITINEADLKTYYEQNLQRLSGAEERRASHILITSPKTASAEERQKAKAKAEELLAA 302

Query: 212 LPKDCNKLEKFASKIH-----DVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQK 265
           + K  +     A K         S G   +     +   F++      + + +    ++ 
Sbjct: 303 VKKSPDTFADVARKNSQDPGSAPSGGDLDFFARGAMVKPFEDAVFSMKKGDISAVVESEF 362

Query: 266 GVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAE 303
           G   I + D +         +K  L A     + +K  +E
Sbjct: 363 GYHIIRLTDIKAPKQRSFEEMKPELEADLKKQQAQKKFSE 402



 Score = 44.3 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 29/330 (8%), Positives = 89/330 (26%), Gaps = 43/330 (13%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK-- 58
           M   +       + LL    ++  F +  +  Y            ++G+ I   +  +  
Sbjct: 1   MFDFIRKHTKVTMALLFL-LIVPSFILFGLDGYNRSREQGVAVARVDGKDIIQSEWDRAH 59

Query: 59  --RIALLKLQKI--------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
              +  L+            + +     ++ L+ + +     +K  +      +     Q
Sbjct: 60  QLEVDRLRASMPSLDAKLLDSPQARYATLERLVRDRVIAAAADKFKLVISDQRLARELQQ 119

Query: 109 -------HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
                     +  L  E +   L  QG+    F+  +        V+       + +   
Sbjct: 120 SSEIASLRRSDGNLDMERYRQVLGSQGMSPEMFEANVRADLSNRQVLTGIGASGFSSSSA 179

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
              A     +   ++             +           +    ++  +L +   +   
Sbjct: 180 ADLALNAYFEKREIQLARF------NAADFAAKLSPTDADLDQFYKANEKLFQAPEQASI 233

Query: 222 FASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
               +   ++ K+  + E+DL   ++  L++           ++    + I   +    E
Sbjct: 234 EYVMLDVETVRKSITINEADLKTYYEQNLQRLSGA-----EERRASHIL-ITSPKTASAE 287

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
                         K +    E +  ++ +
Sbjct: 288 E-----------RQKAKAKAEELLAAVKKS 306


>gi|254691283|ref|ZP_05154537.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           6 str. 870]
 gi|256256468|ref|ZP_05462004.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           9 str. C68]
 gi|260756889|ref|ZP_05869237.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           6 str. 870]
 gi|260882704|ref|ZP_05894318.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           9 str. C68]
 gi|297249827|ref|ZP_06933528.1| peptidyl-prolyl cis-trans isomerase C [Brucella abortus bv. 5 str.
           B3196]
 gi|260676997|gb|EEX63818.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           6 str. 870]
 gi|260872232|gb|EEX79301.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           9 str. C68]
 gi|297173696|gb|EFH33060.1| peptidyl-prolyl cis-trans isomerase C [Brucella abortus bv. 5 str.
           B3196]
          Length = 311

 Score = 77.0 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/280 (10%), Positives = 78/280 (27%), Gaps = 40/280 (14%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             ++NG  I + DI         +     L   A    + E L ++              
Sbjct: 51  AVSVNGVTIDEADILTEAQNHPAENPGAALLSAARTLAVRELLLQRAR------------ 98

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                ++ +   D   +      ++   V++ +  +       E
Sbjct: 99  ------------------EIGIEPEHEKDAEGRAETDEDALVRMVIEREVDV-PSASRDE 139

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE-- 220
                +  ++      ++      I  +    +     R      +   + +        
Sbjct: 140 AQRYYENNRHRFTSAPILEASHILIAADPADQETRDAARQTATRLAAAVIAEPATFASVA 199

Query: 221 -KFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN--PYVTQKGVEYIAICDKR- 276
            +++S       G    L      P+F+  L++     T   P  ++ G   + + D+R 
Sbjct: 200 LEYSSCPSGAQGGNLGQLTRGSTVPEFERALERMTPGETTANPIESRFGYHIVRL-DRRV 258

Query: 277 --DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             +      +   ++     +   K  ++Y+  L + A I
Sbjct: 259 EGEELPFDYVADKIAGWLEASTWSKAVSQYIAILAAEAEI 298


>gi|229196551|ref|ZP_04323295.1| Foldase protein prsA 1 [Bacillus cereus m1293]
 gi|228586907|gb|EEK44981.1| Foldase protein prsA 1 [Bacillus cereus m1293]
          Length = 288

 Score = 77.0 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/313 (12%), Positives = 91/313 (29%), Gaps = 50/313 (15%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKIN 69
            + +L      L       +++  +   S  + T  +    +T+ ++SK    L+ +   
Sbjct: 2   RYFELKKKKLFLGTIISCVVLALSACGSSDNVVTSKVGN--VTEKELSKE---LRQKYGE 56

Query: 70  GELEKIAVQE-LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             L ++ + + L+ +     E  K  +    + +   F       GL  ED         
Sbjct: 57  STLYQMVLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKATLEQLGLKNED--------- 107

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                 K+ +  +  +   +K     K      +       +                  
Sbjct: 108 ----ELKEKMKPEIAFEKAIKATVTEKDVKDNYKPEMKVSHILVKD-------------- 149

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQ 247
                     +K  K+ +E            ++++         G+           +F+
Sbjct: 150 ----------EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFE 199

Query: 248 NLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY-- 304
               K      + P  T  G   I + DK++L     +K  +       +++    ++  
Sbjct: 200 EAAYKLDAGQVSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQ 259

Query: 305 --VKKLRSNAIIH 315
             V +L  +A I 
Sbjct: 260 QVVNELLKDADIK 272


>gi|146329550|ref|YP_001209813.1| PpiC-type peptidylprolyl cis-trans isomerase [Dichelobacter nodosus
           VCS1703A]
 gi|146233020|gb|ABQ13998.1| PpiC-type peptidylprolyl cis-trans isomerase [Dichelobacter nodosus
           VCS1703A]
          Length = 421

 Score = 77.0 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/270 (10%), Positives = 76/270 (28%), Gaps = 5/270 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I++  I+ +I  +  Q+      +  +  L  + L +Q   +   T              
Sbjct: 153 ISEQQINNQITQIIRQRGTKFHLQDLLLPLPKKELPEQAYRQQMQTISQALKTTGNDLAK 212

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
               L    F+                        ++V        G   +++ +     
Sbjct: 213 TAQLLPKAQFNDLGAVNLGQIPAKFAQAVATLNSGELVAEPVADADGLHFLKVVSKTAAN 272

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDV 229
                 E      +    D        +Q       +             +++      V
Sbjct: 273 GQHYEVEQGKLRHILIRRDPNNPQFSRLQIE--QLYQQLQSGADFAQLAARYSQDPRSAV 330

Query: 230 SIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-GEIALKAY 287
           + G   ++    L P+F  ++ +   N  + P+ +  G   I +  ++ +   E  ++ +
Sbjct: 331 NGGDLGWMSTDQLDPRFVAVMHRIPFNTISEPFESALGWHIIEVFARQTVDRSEERIRDH 390

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           +        +     +   ++R  A I ++
Sbjct: 391 IRRTLYEEALALAWEQKCAQMRQAAYIRWF 420



 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/312 (9%), Positives = 100/312 (32%), Gaps = 17/312 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIR----TTINGEVITDGDISKRIALLKLQKI 68
           +KL+  +F L++     +           +       +N E I+   +++ +   + +  
Sbjct: 1   MKLIILFFALMLLPSWALDFGPKPMPQQNVLDEIGLVVNEEAISRKRLNELLEQQRARAP 60

Query: 69  NGEL--EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED-FSSFLD 125
             +   E+   +++I++ L  Q  + + +T     +++     A    +S    +     
Sbjct: 61  RDQPYSEEQLQEQIIMQILMAQMAKSAHLTVKDAEIDHAIATVAAQHKISVAQLYQQIAR 120

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
             G+    ++Q +A   +  ++ +          E +I     ++      ++ ++ +L 
Sbjct: 121 TMGLSQTEYRQQIAQLMLQDELKQRLIGRDINISEQQINNQITQIIRQRGTKFHLQDLLL 180

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ 245
            +P  +L  Q + Q+    ++  +          +       +        +    +  +
Sbjct: 181 PLPKKELPEQAYRQQMQTISQALKTTGNDLAKTAQLLPKAQFN----DLGAVNLGQIPAK 236

Query: 246 FQNLLKKSQNN--TTNPYVTQKGVEYIAICDKRDLGG--EIALKAYLSAQNTPTKIE--K 299
           F   +    +      P     G+ ++ +  K    G      +  L            +
Sbjct: 237 FAQAVATLNSGELVAEPVADADGLHFLKVVSKTAANGQHYEVEQGKLRHILIRRDPNNPQ 296

Query: 300 HEAEYVKKLRSN 311
                +++L   
Sbjct: 297 FSRLQIEQLYQQ 308


>gi|213622668|ref|ZP_03375451.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
          Length = 599

 Score = 77.0 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/372 (10%), Positives = 91/372 (24%), Gaps = 85/372 (22%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-------------- 70
           F +  +  Y     S+     +NG+ I+           + +                  
Sbjct: 1   FILTGVSGYL-IGGSNNYAAKVNGQEISRAQFENAFNNERNRMQQQLGDRYSELAANEGY 59

Query: 71  --ELEKIAVQELIVETLKKQEIEK-----------------SGITFDSNTVNYFFVQHAR 111
              L +  +  LI E L  Q   +                      D    N  +     
Sbjct: 60  MKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQAIFATPAFQVDGKFDNNRYNAIVN 119

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI-------------WPDVVKNDFML---- 154
             G++A+ ++  L  Q               +                VV+   +     
Sbjct: 120 QMGMTADQYTQALRNQLTTQQLINGVAGTDFMLKGETDELAALVSQQRVVREAVIDVNAL 179

Query: 155 --KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE----- 207
             K    + E+ +   + K   +     R     +    +Q            ++     
Sbjct: 180 AAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKLDAATMQAPVSDADIQAYYDQHVDQF 239

Query: 208 ------------------------SRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL 242
                                   +  +        ++ ++ I    + G   +L ES  
Sbjct: 240 TQPERIRYSIIQTKTEDDAKAVLDALNKGEDFATLAKEKSTDIISARNGGDMGWLEESAT 299

Query: 243 HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKH 300
            P+ +N   K +   +    +  G     + D +    +    ++  ++A+    K    
Sbjct: 300 VPELKNAGLKEKGQISGVIKSSVGFLVARLDDIQPAKVKPLSEVRDDIAAKVKQEKALDA 359

Query: 301 EAEYVKKLRSNA 312
                +K+   A
Sbjct: 360 YYALQQKVSDAA 371


>gi|146281741|ref|YP_001171894.1| NifM protein, putative a peptidyl-prolyl cis/trans isomerase
           [Pseudomonas stutzeri A1501]
 gi|145569946|gb|ABP79052.1| NifM protein, putative a peptidyl-prolyl cis/trans isomerase
           [Pseudomonas stutzeri A1501]
          Length = 292

 Score = 77.0 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 83/255 (32%), Gaps = 8/255 (3%)

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
             +   + E+I  ++L +E       E  G+      V   + + A             L
Sbjct: 31  SSQQREQAERIIGRQLQLENAVLHSAEACGVVIPDEQVADAWAEIAARYEDPLALHK-AL 89

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFM--LKYGNLEMEIPANKQKMKNITVREYLIRT 182
           D  G+ +   +Q LA +     V++       +  + ++ +       + +     L R 
Sbjct: 90  DDSGLDEAGLRQLLARELKVETVLQRVCAGLPEITDTDVSLYYFNHPERFVRPATRLARQ 149

Query: 183 VLFSIPDNKLQNQGFVQ--KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           +L ++ ++  +N       +    AE    +  +   +  K +     +  G    +   
Sbjct: 150 ILITVNEDFPENSRTSAWRRINLIAERLLRKPQRFAEQALKHSECPSAMEGGSLGLIRPG 209

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKI 297
            L+PQ +  L             T  G   +   +    G      +  +L  +    + 
Sbjct: 210 VLYPQLEACLFALRAGEIGPVVETPLGFHLLFCEEIHPAGHLSLQEVLPHLREKLRARQY 269

Query: 298 EKHEAEYVKKLRSNA 312
           E+H+  ++  L  +A
Sbjct: 270 ERHQRAWLAGLLQSA 284


>gi|49477885|ref|YP_036943.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49329441|gb|AAT60087.1| peptidylprolyl isomerase (protein export protein prsA) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 280

 Score = 77.0 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/305 (11%), Positives = 83/305 (27%), Gaps = 44/305 (14%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +     V+    +   +S  +   S  I TT +G  I++ D +K++             K
Sbjct: 1   MKRKKIVIGSILMGMTLSLSACGSSDNIVTTKSGS-ISESDFNKKLK--------ENYGK 51

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             + E++VE +   + + +                        E  +   D         
Sbjct: 52  QNLSEMVVEKVLNDKYKATDEEVT---------------KQIKELKTKMGDNFNTYMESN 96

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                 Q      +   F         E          +     L++             
Sbjct: 97  GVKNEDQLKEKLKLTFAFEKAIKATVTEKEIKDHYKPKLQASHILVK------------- 143

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK- 252
               +K  K+ +E            ++++         G         +  +F++   K 
Sbjct: 144 ---DEKTAKEIKEKLNNGEDFAALAKRYSEDPGSKEKGGDLSEFGPGMMVKEFEDAAYKL 200

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
                + P  +  G   I +  K++L      K  +  +    +I+  +   +  + +  
Sbjct: 201 EVGQVSEPIKSSFGYHIIKLTGKKELKPYEEEKVNIRKELEQQRIQDPQFHQQVTRDILK 260

Query: 311 NAIIH 315
           NA I 
Sbjct: 261 NADIK 265


>gi|315185798|gb|EFU19564.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
           thermophila DSM 6578]
          Length = 346

 Score = 77.0 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 112/341 (32%), Gaps = 37/341 (10%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-- 70
           ++L      +++  + P       A  +R++ T   EVIT       + LL+ Q      
Sbjct: 1   MRLWKIVLGVVVMGLFPAFGQIIDAPVARVKLT-KLEVITQRQFKADVELLEKQLGRQLS 59

Query: 71  -ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN---TGLSAEDFSSFLDK 126
            E  K  +   I E L  Q  EK  ++     ++    Q+ ++        E       +
Sbjct: 60  LEERKQLLDARIGEILIYQAAEKEYLSVTQEELSQAIAQYKQSVAPNVSDQEFRRLIESQ 119

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG----NLEMEIPANKQKMKNITVREYLIRT 182
            G+    F++ +  + I    +      +        E EI     +  +      ++R 
Sbjct: 120 GGMTWEQFQEQMKKRLIAEKYLYQKKGQEIQNVPAPSEEEIRRVYNENISNFTAPEMVRY 179

Query: 183 VLFSIPD---NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLL 238
               I     +  + +    + ++  +E    L K    +EK++         G   YLL
Sbjct: 180 SHIFIDTRGLSDEEKKKAYNRVLQVKKEVDGSLEKFREAVEKYSDDQASRYQGGDVGYLL 239

Query: 239 ESDLH-------PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL-----------GG 280
            +D           F  +     N  ++   +  G   + + +  +              
Sbjct: 240 RTDKQRESFLGKEFFSKIFSLPLNKVSDVLASNVGYHIVVVTEHHEPRLLGLDDRLLPNS 299

Query: 281 EIALKAYLSAQNTPTKIEKHEAE----YVKKLRSNAIIHYY 317
           +  ++  ++A     K ++   +     +++LRS A +  Y
Sbjct: 300 KQTVRDQITALLVGQKRQEAYQKALQKLIEELRSQADVSIY 340


>gi|319941473|ref|ZP_08015801.1| hypothetical protein HMPREF9464_01020 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805093|gb|EFW01923.1| hypothetical protein HMPREF9464_01020 [Sutterella wadsworthensis
           3_1_45B]
          Length = 261

 Score = 77.0 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 87/305 (28%), Gaps = 50/305 (16%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--GEL 72
           ++ +  VL +   V +V   + A++     T+NGE +    +                EL
Sbjct: 1   MIKSKLVLALALSVGLVGSAAAALTD---MTVNGEKVPASRLEAVYNNAVKAGAKAGPEL 57

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           E    +++  E +  QE  K+ I       +       +                     
Sbjct: 58  EARVKRDVTEEVVLLQEAAKAKIDRTKEYRDAIDRVGKQ--------------------- 96

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                     +  +++  D+  K    + E+ A     K +          +        
Sbjct: 97  ----------LKVELLVADYAKKNPVSDKEVRAAYDNAKKVYGDTEYQVRHILV------ 140

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK 251
                 ++  K+  +   +  K     +  +       + G   +L  S++ P F N  K
Sbjct: 141 ----KTEQEAKNIIQRLNKGEKFDALAKSESLDPKSGPAGGLIGWLSPSNVEPNFGNAFK 196

Query: 252 K-SQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
             S  +    P   Q G   I +  KR        ++           + +   +  +L 
Sbjct: 197 ILSAGDVAQAPIQNQFGWHVIKLDAKRSQKNFPTYESQ-KDSLRAQLSQLNAKRHFAELV 255

Query: 310 SNAII 314
             A +
Sbjct: 256 QKAKV 260


>gi|228915458|ref|ZP_04079047.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228844105|gb|EEM89165.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 280

 Score = 77.0 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/305 (11%), Positives = 83/305 (27%), Gaps = 44/305 (14%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +     V+    +   +S  +   S  I TT +G  I++ D +K++             K
Sbjct: 1   MKRKKIVIGSILMGMTLSLSACGSSDNIVTTKSGS-ISESDFNKKLK--------ENYGK 51

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             + E++VE +   + + +                        E  +   D         
Sbjct: 52  QNLSEMVVEKVLNDKYKATDEEVT---------------KQIKELKTKMGDNFNTYMESN 96

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                 Q      +   F         E          +     L++             
Sbjct: 97  GVKNEDQLKEKLKLTFAFEKAIKATVTEKEIKDHYKPKLQASHILVK------------- 143

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK- 252
               +K  K+ +E            ++++         G         +  +F++   K 
Sbjct: 144 ---DEKTAKEIKEKLNNGEDFAALAKQYSEDPGSKEKGGDLSEFGPGMMVKEFEDAAYKL 200

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
                + P  +  G   I +  K++L      K  +  +    +I+  +   +  + +  
Sbjct: 201 EVGQVSEPIKSSFGYHIIKLTGKKELKPYEEEKVNIRKELEQQRIQDPQFHQQVTRDILK 260

Query: 311 NAIIH 315
           NA I 
Sbjct: 261 NADIK 265


>gi|88703271|ref|ZP_01100987.1| peptidyl-prolyl cis-trans isomerase D [Congregibacter litoralis
           KT71]
 gi|88701985|gb|EAQ99088.1| peptidyl-prolyl cis-trans isomerase D [Congregibacter litoralis
           KT71]
          Length = 622

 Score = 77.0 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/400 (11%), Positives = 96/400 (24%), Gaps = 88/400 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVI----TDGDI 56
           M   +  +    +  +    ++I F I  I S      S      +NGE I       ++
Sbjct: 1   MLQDIRANAQGTVAKIIIGLIVISFSIFGIESLLFSGGSDG-VAEVNGEEITPFALQQEV 59

Query: 57  SKRIALL--------------KLQKINGELE--------------------KIAVQELIV 82
           S +   L              + Q     LE                      A+ ++I 
Sbjct: 60  SVQQRRLLSILGENADPALLDQAQLSQQALETLIQREIIKQAAADLELTTSDQALADIIG 119

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
              + Q   +       + +       A      +ED      + GI  + F     ++ 
Sbjct: 120 SMGQFQIDGQFSPDMFQSALASAGFTPALFRERLSEDVEIGQLRAGIAGSDFTTAAELEL 179

Query: 143 IWPDVVKND-----------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                ++             FM      +  + A           E  +      I  ++
Sbjct: 180 ASAIALEGRDVRYVSLPLIDFMASVEVSDEAVEAFYNDNPERFQSEEQLVLEYVEITLDR 239

Query: 192 LQNQGFVQKRIKDAEESRLRLP----------------------------------KDCN 217
                  ++  ++ E  R                                          
Sbjct: 240 YIEDIDEERVREEFELVRDEFELATEARVSHILVEGDDEERAARIAEAQAALDAGMSFAE 299

Query: 218 KLEKFASKIHDVSI-GKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK 275
              +++  I      G   Y          ++ +   +    + P  T+ G   + + D+
Sbjct: 300 AAAEYSDDIGSSQFEGDLGYTAGDTFPEAMEDAVANLAVGERSAPVETEAGTHLLLVTDR 359

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           R+        +   L  +             V++LR  A 
Sbjct: 360 REGSNVSFEEVAEELEDRIARRDAAAELLSDVERLRDIAF 399


>gi|320161645|ref|YP_004174870.1| putative peptidylprolyl isomerase [Anaerolinea thermophila UNI-1]
 gi|319995499|dbj|BAJ64270.1| putative peptidylprolyl isomerase [Anaerolinea thermophila UNI-1]
          Length = 438

 Score = 77.0 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 10/123 (8%), Positives = 36/123 (29%), Gaps = 10/123 (8%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             ++  K+  +   +         +++         G   +  +  +  +F++ +     
Sbjct: 301 ETEETAKEVLDRLNKGEDWVKLAAEYSKDTSNANKGGDLGWFGKGTMVKEFEDAVYALKV 360

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              + P  T  G   I +  +       +            K +    E++ + +S   +
Sbjct: 361 GEISQPVQTTFGYHIIQLLGREVRPLTDSE--------FNQKKQAAYDEWLTQAKSADTV 412

Query: 315 HYY 317
             +
Sbjct: 413 KTF 415



 Score = 37.7 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/159 (10%), Positives = 40/159 (25%), Gaps = 33/159 (20%)

Query: 14  KLLTTYFVLIIFCIVPIVSY----KSWAMSSRIRTTINGEVITDGDISKRIALLKLQK-- 67
           + L     +++  ++ ++ Y    +S    +R    +  E IT  +        +  +  
Sbjct: 27  RYLLLGTAIVLIAVIGLIVYGILDQSVLKQNRAVAQVGNEKITVKEFQTEAKFWRYLQVQ 86

Query: 68  ---------------------------INGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
                                          + K  +  +I + L  QE  K GIT    
Sbjct: 87  QYNNLASNPLLVQFYGSYLQELETSLADPQTIGKQVLDAMIEDALVAQEAAKRGITVSEE 146

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
            ++    +            +             +Q   
Sbjct: 147 EIDKEMQEAFGFYINGTPTPTLTATPFATATLTTQQLTW 185


>gi|229030040|ref|ZP_04186105.1| Foldase protein prsA 1 [Bacillus cereus AH1271]
 gi|228731301|gb|EEL82218.1| Foldase protein prsA 1 [Bacillus cereus AH1271]
          Length = 288

 Score = 77.0 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/312 (9%), Positives = 86/312 (27%), Gaps = 48/312 (15%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKIN 69
            +  L      L       +++  +   S  + T  +    +++ ++SK    L+ +   
Sbjct: 2   RYFGLKKNKLFLGTIISCVVLALSACGSSDNVVTSKVGN--VSEKELSKE---LRQKYGE 56

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
             L ++ + + +++  K                     +     G + +           
Sbjct: 57  STLYQMVLSKALLDKYK----------VSDEEAKKQVEEAKEKMGDNFKST--LEQVGLK 104

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
            ++  K+ +  +  +   +K     K      +       +                   
Sbjct: 105 NEDELKEKMKPEIAFEKAIKETVTEKDVKENYKPEMKVSHILVKD--------------- 149

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQN 248
                    +K  K+ +E            ++++         G+           +F+ 
Sbjct: 150 ---------EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEE 200

Query: 249 LLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY--- 304
              K      + P  T  G   I + DK++L     +K  +       +++    ++   
Sbjct: 201 AAFKLDAGQVSEPVKTTYGYHIIKVTDKKELKPFDEVKDQIRKDLEQQRLQDTTGKWKQQ 260

Query: 305 -VKKLRSNAIIH 315
            V  L  +A I 
Sbjct: 261 VVNDLLKDADIK 272


>gi|39995469|ref|NP_951420.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Geobacter sulfurreducens PCA]
 gi|39982232|gb|AAR33693.1| PPIC-type PPIASE domain protein [Geobacter sulfurreducens PCA]
 gi|307634691|gb|ADI83192.2| peptidylprolyl cis-trans isomerase, PpiC-type [Geobacter
           sulfurreducens KN400]
          Length = 297

 Score = 77.0 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/262 (8%), Positives = 65/262 (24%), Gaps = 12/262 (4%)

Query: 58  KRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
           + I  +  +     L +  +   I     + + +        + +    +Q       + 
Sbjct: 23  EEINPVVGKAGEFTLREADLDRFIDALPAEAQQQLRKNPEQRSLLAREILQTRAIAMKAR 82

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
           +D       +         Y     +  + +    +      + E+ A  Q+     V  
Sbjct: 83  KDGF----DRKPEVRERLGYFVDDFLAREYLTKVVIAGVKVSDAELRAYYQEHAKDFVMP 138

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI----HDVSIGK 233
                    I      +           E    RL K  +     A            G 
Sbjct: 139 EQAIVRHIFIGFTDAADSQAKAAAKTKTEGVLERLKKGEDFAAVAAEASEDIESAKEGGL 198

Query: 234 AQYLLESDLH--PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLS 289
              +     +     + +        +    +  G   + + ++++        +K  L 
Sbjct: 199 LGAITPGQTNSEEFEKAVFALKAGEMSGLVESPFGYHIVKVDERKEKRALPFDEVKDALR 258

Query: 290 AQNTPTKIEKHEAEYVKKLRSN 311
           ++      +K   E+V ++   
Sbjct: 259 SKLQGEAEQKKLREFVDEVAKQ 280


>gi|163940109|ref|YP_001644993.1| peptidylprolyl isomerase [Bacillus weihenstephanensis KBAB4]
 gi|229011588|ref|ZP_04168774.1| Foldase protein prsA 1 [Bacillus mycoides DSM 2048]
 gi|229059985|ref|ZP_04197359.1| Foldase protein prsA 1 [Bacillus cereus AH603]
 gi|229133173|ref|ZP_04262008.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST196]
 gi|163862306|gb|ABY43365.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus
           weihenstephanensis KBAB4]
 gi|228650299|gb|EEL06299.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST196]
 gi|228719398|gb|EEL71002.1| Foldase protein prsA 1 [Bacillus cereus AH603]
 gi|228749743|gb|EEL99582.1| Foldase protein prsA 1 [Bacillus mycoides DSM 2048]
          Length = 283

 Score = 77.0 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/306 (11%), Positives = 83/306 (27%), Gaps = 49/306 (16%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F+  I   V +      +  +   + +    +T+ ++SK    L+       L ++ 
Sbjct: 4   KKLFMGTIIACVALTLSACGSSENVATSKVGN--VTEKELSKE---LRQTYGKSTLSQMM 58

Query: 77  VQE-LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           + + L+ +     E  K  +      +   F       GL  ED               K
Sbjct: 59  LNKALLDKYKVSDEEAKKQVEAAKEQMGDKFKVALEQVGLKNED-------------ELK 105

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           + +  +      ++     K      +       +                         
Sbjct: 106 ERMKPEIALEKAIRATVTDKDVKDNHKPEMKVSHILVKD--------------------- 144

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              +K  K+ +E            ++++         G+           +F+    K  
Sbjct: 145 ---EKTAKEVKEKINNGEDFTALAKQYSEDTGSKEQGGEIAGFAPGQTVKEFEEAAYKLD 201

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY----VKKLR 309
               + P  T  G   I + DK++L     +K  +       +++    ++    +  L 
Sbjct: 202 AGQVSEPIKTSYGYHIIKVTDKKELKPFDEVKDTIRKDLEQQRLQDATGKWKQQVINDLL 261

Query: 310 SNAIIH 315
             A I 
Sbjct: 262 KEADIK 267


>gi|218961314|ref|YP_001741089.1| putative Peptidylprolyl isomerase [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729971|emb|CAO80883.1| putative Peptidylprolyl isomerase [Candidatus Cloacamonas
           acidaminovorans]
          Length = 595

 Score = 77.0 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/372 (10%), Positives = 95/372 (25%), Gaps = 63/372 (16%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++       I ++   F+L     V I    S          +NG  IT     ++I
Sbjct: 1   MLDQLRKKQKVVIYIVAIVFILG-MAAVGIGELLSPK---PYLGKVNGTKITYEMYQQKI 56

Query: 61  ALLKLQ------------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
             +  +             +   +E  A + L+ + L +Q+I+K  I    + V      
Sbjct: 57  QEIYERYAEMYKDQPIDENMRRNIENQAWETLVNDILWQQQIKKHKIKITEDDVLTEMQN 116

Query: 109 HARN----------TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK--- 155
           +              G   +       K         +      +    ++     +   
Sbjct: 117 NPPQELMQNESLQTNGRFDKSKYLSALKNNPQFFAAMEEYVRGYLPRQKLQEKIKAQAGI 176

Query: 156 ------------------------------YGNLEMEIPANKQKMKNITVREYLIRTVLF 185
                                             + EI A   K +    ++     + +
Sbjct: 177 TIDSLKAQYAKETDSISGKFIWFEPNKSDPVTVTDAEIKAYYDKNRETEYKKGPASRIKY 236

Query: 186 SIPDNK--LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL 242
              + K   ++   V+   ++      R        ++++       + G      +  +
Sbjct: 237 LAFEEKPSDKDYASVKLLAEELYNRARRGEDFATLAKEYSDDPGSKDNGGSLGVFGKGQM 296

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE 301
            P+F+ +         + P  T  G   I       +  +                ++ +
Sbjct: 297 VPEFEQVAFALKVGEISKPVKTSFGWHIIRCDSIATITKDNPQIKASHILLIVEASDETK 356

Query: 302 AEYVKKLRSNAI 313
              + K  S A 
Sbjct: 357 NAILDKAESAAK 368



 Score = 36.6 bits (82), Expect = 4.6,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 1/63 (1%)

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-YLSAQNTPTKIEKHEAEYVKKLRSN 311
               T+    T++G   I+  ++         K      Q   T  +     +  ++R +
Sbjct: 523 EAGQTSGLIHTKEGSFIISCTERIKPDFNAFAKDKERQEQIRKTLEDAAWNRWYDQMRKS 582

Query: 312 AII 314
           A I
Sbjct: 583 AKI 585


>gi|73667407|ref|YP_303423.1| hypothetical protein Ecaj_0794 [Ehrlichia canis str. Jake]
 gi|72394548|gb|AAZ68825.1| ATP synthase F1 subcomplex epsilon subunit [Ehrlichia canis str.
           Jake]
          Length = 399

 Score = 77.0 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 53/310 (17%), Positives = 113/310 (36%), Gaps = 14/310 (4%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI-- 68
             I +      L+I C++   S        +I   +N ++I++ D+ KR+A+ K      
Sbjct: 1   MIINMFNHAVRLLILCVMLFSST--VFADVKIVAMVNDDLISNLDLEKRVAINKFFYKVD 58

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
                +IA+  LI E++ +QE +K  IT     +     Q      L   DF S+++ QG
Sbjct: 59  GSTAAEIALDALIDESIWRQEAKKLKITVTERDILEAVKQFLVMKNLGNIDFKSYVETQG 118

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
           +    F Q++  + +W  ++    +      E EI  N+       +       +   I 
Sbjct: 119 LDYKMFMQHMKSKLLWNKILMLKVIPYIIISEKEIRDNRDCTVTNGID--TSVHIQEIIV 176

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
              + +   +   I    ++ + +       +    +   +++      L + L      
Sbjct: 177 PASVSDNESIIDSIMSDLQNGVSVESIQANKKDVLVEEASINVKNIDVDLANKL------ 230

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-YLSAQNTPTKIEKHEAEYVKK 307
            L     +   P   Q G   I +  + D+  E A  +  L   +   +  K  +  + +
Sbjct: 231 -LNVKVGDMIGPIKNQHGSFIIKLLHRADINREFASSSVNLKQIHLNVEEGKKYSSQISQ 289

Query: 308 LRSNAIIHYY 317
           L++ A    +
Sbjct: 290 LKTKATCENF 299


>gi|288575146|ref|ZP_06393503.1| hypothetical protein Dpep_2422 [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570887|gb|EFC92444.1| hypothetical protein Dpep_2422 [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 350

 Score = 76.6 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/331 (12%), Positives = 96/331 (29%), Gaps = 25/331 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSY--KSWAMSSRIRTTINGEVITDGDISK 58
           M   + T +   +      FVL I  +  +        +        I+G+ +    + +
Sbjct: 1   MLRTLRTQVKWILVFFLLCFVLAIPLMYGVGGGKSSRSSNEDYAVAEIDGKKLMRSQLLR 60

Query: 59  RIALLKLQKINGE--------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
            +     +    +        + ++ + +++V+    +E++  GIT     ++       
Sbjct: 61  SVQDYVERAGIKDVTSTDLPMIRQMVLDQMVVQEALLKEVKALGITPSKEELDQAVSGIE 120

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                + E F  +L + GI  N  ++ L  Q     +++        N E          
Sbjct: 121 DQF-PTKEAFMQYLQETGITMNDLREQLKTQLSQQMLLEEASAAAKVNDEELQALYDSVK 179

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS 230
             +                  L  +   Q+    A E           LE+F+S     S
Sbjct: 180 DFVFTVPE---------GFEVLAAEFSSQEAANKAYEELSSGTSWDVVLEEFSSSDITGS 230

Query: 231 IG--KAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYI---AICDKRDLGGEIALK 285
            G  K  +L +  L      +          P         +        R++      K
Sbjct: 231 TGSEKPAFLKKDSLPENLAFIASMDDGQYAEPVEVASDDFIVVYRKSAKDREVTSFEDAK 290

Query: 286 AYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             L +     K ++ +  ++ ++     +  
Sbjct: 291 EQLQSMVLNQKRQELQRTFLDEISEKVDVKI 321


>gi|261346360|ref|ZP_05974004.1| peptidyl-prolyl cis-trans isomerase D [Providencia rustigianii DSM
           4541]
 gi|282565674|gb|EFB71209.1| peptidyl-prolyl cis-trans isomerase D [Providencia rustigianii DSM
           4541]
          Length = 622

 Score = 76.6 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/398 (10%), Positives = 98/398 (24%), Gaps = 86/398 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T  +     +    +++ F +  +  Y     S+     +NG+ I+   + +  
Sbjct: 1   MMEDLRTKANSPFIKVLLAIIILSFVLTGVAGYVIGGSSND-AAEVNGQPISREQLQQAF 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              +                      EL   A+  LI   L  Q   +  ++     +  
Sbjct: 60  QQERQSLQEYLGDKFAEVASNDEYMKELRTQALNNLINTQLINQYANELNLSASDKQIEQ 119

Query: 105 FFVQH---ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                     +    +E +   L +  I  + F   +    +   + K            
Sbjct: 120 AIFAMQIFQTDGKFDSEKYREILSRYNINADSFAAQIRQDLVRAQLGKSFTGTEFALPSE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRT------ 182
                                 +   K    E E+ A     +N  +    ++       
Sbjct: 180 VKAYAELFMQQREVRTAMLPLAEVQAKQTVTEEELKAYYDANQNSFISPEQVQVSYVEMD 239

Query: 183 ------------VLFSIPDNKLQNQGFVQKRIKDAE-------------ESRLRLPKDCN 217
                        + +     L+N    ++++                 E +        
Sbjct: 240 AASMPKATVNDEEITTYYQQNLKNFTKAEQKLYSMIQVASEKDAQALETELKNGADFAAL 299

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
             EK   K    + G   ++  +    +  +     +   + P   Q       + D   
Sbjct: 300 AAEKSTDKFSASNKGVIGWMEAASTPSEIISANLTEKGQVSAPIKVQDNYVLFRLDDITP 359

Query: 278 --LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             +     +K  +    T  K  K   +  +K+   A 
Sbjct: 360 EAIKPLDEVKDSIKTSLTQDKSIKQFYDLQQKVSEAAT 397


>gi|325577782|ref|ZP_08148057.1| peptidyl-prolyl cis-trans isomerase [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160527|gb|EGC72653.1| peptidyl-prolyl cis-trans isomerase [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 625

 Score = 76.6 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/394 (10%), Positives = 98/394 (24%), Gaps = 84/394 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           +  K+      FI       + + F I  +  Y  ++ +      +NGE I+  D   R 
Sbjct: 2   LIEKMHGIAHSFIGKAIFALIPVSFLIGGMSGYL-YSSNDSFAAKVNGETISQQDFLNRY 60

Query: 61  ALLKLQKINGE----------------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
                 +   E                L +  +Q L+ + L +Q  ++  +      +  
Sbjct: 61  NQEFEARAQQEGESFLAKTDSVEFVTALRQNLIQRLVDQELIRQYAKELKLGVSDEMIKR 120

Query: 105 FFVQH--------------------------------------ARNTGLSAEDFSSFLDK 126
             V                                         +     A+       +
Sbjct: 121 AIVSDPNLQSNGKFDNVRYQQLLSQNGLTSDTYAAILRNALTLEQMQNGLADSEFVVPAQ 180

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL-- 184
                  F Q    +     +       K  + E++   +      +   +  ++ +   
Sbjct: 181 VKDNAQVFFQKRIARLATLPLADEIAKQKVTDEEIKAYYDANAKSLVQPEQAKVQYIHVS 240

Query: 185 ------------------------FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
                                     I       Q   +K      +   +        +
Sbjct: 241 ANELGKLQPVTETQIAQYYQENKAQFISQKLAHIQLSTEKEADSVYQELKKGADFAELAK 300

Query: 221 KFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL 278
             +  K+     G+  ++ +++L   F++     +    + P         I + D+++ 
Sbjct: 301 TKSLDKLSGAQGGELGWVKDNELPKNFEDAALLLNVGQYSTPVNVDGAYHIILVQDRKER 360

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             E  +K  ++        E       K +R  A
Sbjct: 361 TLEE-VKEQIADTVRKNLAESRFQAVEKAVREKA 393


>gi|282859615|ref|ZP_06268718.1| PPIC-type PPIASE domain protein [Prevotella bivia JCVIHMP010]
 gi|282587618|gb|EFB92820.1| PPIC-type PPIASE domain protein [Prevotella bivia JCVIHMP010]
          Length = 486

 Score = 76.6 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 71/284 (25%), Gaps = 20/284 (7%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISK-----RIALLKLQKINGEL--EKIAVQELIVETLK 86
                   +   +  E I   ++           +K       L  E+IAVQ+L +    
Sbjct: 54  SGKNTIDEVIWVVGDEPILLSEVEITKLQGEAEGMKWDGDPEYLVPEQIAVQKLFLHQAA 113

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
              I  S                +     S E    +  K                    
Sbjct: 114 LDSISVSESEIAQGVEQQINYWISLPQIGSKEKLEEYQRKSVAQIRQDLHDDYKNRQLVQ 173

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
            ++   +        E+ A  +K+   ++     R  +  +       +  V +      
Sbjct: 174 KMQEQLVSDLKVSPAEVRAYFKKLPADSIPTIPTRVEVEILTQTPKIEKEEVSRIKNQLR 233

Query: 207 ESRLRLPKDCNKLEKFASKIH-----DVSIGKAQYLLESDLHPQFQNLLKKSQN--NTTN 259
           +   R+ K     E  A             G+  ++  + L P F        +    + 
Sbjct: 234 DYTDRVNKGETSFETLARLYSEDPGSARQGGELGFIGRAALDPAFAGAAFNLTDPKKLSK 293

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAE 303
              ++ G   I + DKR           +       K+ +   +
Sbjct: 294 IVESEFGYHIIQLIDKRGDKIN------VRHILLKPKVSQASID 331


>gi|332971823|gb|EGK10770.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp.
           1501(2011)]
          Length = 624

 Score = 76.6 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/398 (10%), Positives = 105/398 (26%), Gaps = 87/398 (21%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
              +   L  +   +     L    I+ + SY + + ++    T+  + IT  +    I 
Sbjct: 1   MESIRNFLQSWPGRIFLMLCLSPLVILGLESYFTGSANANDVATVGDQTITRAEYQDAIN 60

Query: 62  LLKLQK----------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
             + +               L +  ++ LI   L + +  + G+      +N   +Q  +
Sbjct: 61  TRRNELLQNGVEASAINTNALNREVLKGLINRALLRNQSGQLGMHVSDKVINDLLLQDPQ 120

Query: 112 ----NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV------------------- 148
               N   S + F+  L +QG+  +        Q     +                    
Sbjct: 121 FLDENGQFSNDRFAFSLQQQGMTKDQLFDQYRQQLNLMQLYAGVAQTAIYPESEINDLLA 180

Query: 149 --------------KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ- 193
                            +  K      EI     + KN      ++      +   K+  
Sbjct: 181 LQLETRDVWVYRLPWEQYKDKVSVSAKEIENYYNEHKNDLNSVAMVDLAYIQLDPAKVAV 240

Query: 194 --------------------------------NQGFVQKRIKDAEESRLRLPKDCNKLEK 221
                                                ++ I+  ++   +        ++
Sbjct: 241 DKVTEKEIQAQYDAFKANYKGAANQKLSQILITGDKAEQTIQQIQKRLKQGESFAALAKQ 300

Query: 222 FASKI-HDVSIGKAQYLLESDL----HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK- 275
           ++         G                  + +   +++  + P  T  G +   + +  
Sbjct: 301 YSEDPISAAKGGDIGTFNPDVFGADGAKVAKAIEGLNKDQISAPVKTSFGYQLFKVTEMS 360

Query: 276 -RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
              +    +++  L AQ    K E+  A+ + ++   A
Sbjct: 361 GDSVPSLASMREELVAQAQRQKREQLIADKITRINEMA 398


>gi|149372557|ref|ZP_01891669.1| putative exported peptidyl-prolyl cis-trans isomerase [unidentified
           eubacterium SCB49]
 gi|149354600|gb|EDM43164.1| putative exported peptidyl-prolyl cis-trans isomerase [unidentified
           eubacterium SCB49]
          Length = 490

 Score = 76.6 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/276 (9%), Positives = 69/276 (25%), Gaps = 13/276 (4%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKIN--GELEKIAVQELIVETLKKQEIEKSGITF 97
             +   +   VI + DI      LK Q I          + +L+ + L     ++  I  
Sbjct: 68  EGVTAVVGEYVIVEFDIDLSYQELKAQGIPVEEISRCQLMGKLMEDKLYAHHAKQDSIMV 127

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV----VKNDFM 153
             N +     Q                           +    +          ++   +
Sbjct: 128 SDNEITQQIDQQMEYMVSELGSEEKVAAYYRKESISELRKELFEVNKTQKLAGEMQRSII 187

Query: 154 LKYGNLEMEIPANKQKMKNI----TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
                   E+ +    +          E  +  ++      +   Q  + +  +   +  
Sbjct: 188 ENVEVTPEEVRSFFYNIPEDERPIFSAEVEVAQLVVEPKITQESRQDAIDQLNEWRTDIL 247

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKA-QYLLESDLHPQFQNLLKKS-QNNTTNPYVTQKGV 267
                   K   ++        G        S +  +F++      +   + P+ T+ G 
Sbjct: 248 ENGSSFATKAVLYSKDGSAQKGGLIAGVRRNSPMAKEFKDQAFSLLEGEISEPFQTEFGF 307

Query: 268 EYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAE 303
             + +   R    +I     +  +     ++    +
Sbjct: 308 HILKVDKIRGQELDIRHI-IIFPEIKQETMDAAYKK 342


>gi|283954124|ref|ZP_06371649.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           414]
 gi|283794403|gb|EFC33147.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           414]
          Length = 273

 Score = 76.6 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/299 (12%), Positives = 94/299 (31%), Gaps = 35/299 (11%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
               +  +++  +  +++    T+NG+ I+D ++S+  A +   +    L     + LI 
Sbjct: 4   FSLVVAALIAGVALNVNAATVATVNGKSISDAEVSEFFASMLRGQDFKTLPDNQKKALIQ 63

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           + + +  I +     +                                    +   A  +
Sbjct: 64  QYIMQDLILQDAKKQNLEKD---------------------------PLYTKELDRAKDA 96

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           I  +V +   +        ++ A   + K+  V+   ++     +   K       + + 
Sbjct: 97  ILVNVYQEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKG 156

Query: 203 KDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNN--TTN 259
              +E   +  K     ++ +         G+  +  ES +   F +     +N   TT 
Sbjct: 157 LKGKELDAKFSK---LAKEKSIDPGSKNQGGELGWFDESTMVKPFTDAAFALKNGTITTT 213

Query: 260 PYVTQKGVEYIAICD--KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           P  T  G   I   +   +       +K  +       + +K   +  + L ++A + Y
Sbjct: 214 PVKTNFGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDLLNSAKVEY 272


>gi|194289547|ref|YP_002005454.1| peptidyl-prolyl cis-trans isomerase [Cupriavidus taiwanensis LMG
           19424]
 gi|193223382|emb|CAQ69387.1| PEPTIDYL-PROLYL CIS-TRANS ISOMERASE [Cupriavidus taiwanensis LMG
           19424]
          Length = 644

 Score = 76.6 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/259 (11%), Positives = 70/259 (27%), Gaps = 11/259 (4%)

Query: 52  TDGDISKRIALLKLQKINGELEKI---AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
           T      R+      +  G          + LI   +  ++ ++                
Sbjct: 150 TPEQFDARMRFELAMQQLGASVAATAFVPKSLIERLMAARDQQRDVQALLFKPAG----Y 205

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
            A+    +A   + +   Q       +  +    +  + +     +    L+    +N  
Sbjct: 206 TAKVQPDAAALKAYYDSHQQDFSVPEQAKVEYLVLSGEALAASQAVTPEELKSYYESNIA 265

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-H 227
           + +    R      +         Q Q    K  K  EE R       +   K +     
Sbjct: 266 RFRVDEQRRASHILISAPKDAPAAQRQAAKDKATKLLEEVRKHPDTFADVARKNSQDPGS 325

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG--GEIAL 284
               G   ++    L   F++ +    +   ++   T  G   I +   +        A+
Sbjct: 326 AEKGGDLGFMGRGALVKPFEDAMYALKEGQISDVVETDFGYHIIKLTGTKPAETRPLEAV 385

Query: 285 KAYLSAQNTPTKIEKHEAE 303
           +  L A+      +K  AE
Sbjct: 386 RTELEAELRKQFADKKFAE 404



 Score = 48.9 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 42/145 (28%), Gaps = 21/145 (14%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI-------------ALLKLQKING 70
            F    + SY  +  SS     ++G  I+  ++   +                  Q    
Sbjct: 23  SFVFFGVESYSRFMDSSHDAAKVDGRAISVQEVDNVVRDQSERARQILGANYDPRQFEGP 82

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV--------QHARNTGLSAEDFSS 122
           E  K  +++LI + +    +    +T     +                ++  +  + +  
Sbjct: 83  EARKAVLEQLIQQRVMANAVASEHLTVSDAKLLEEISSLPAIAQLPRGKDGKIDDKAYLQ 142

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDV 147
            L  QG+    F   +  +     +
Sbjct: 143 LLQSQGMTPEQFDARMRFELAMQQL 167


>gi|228990140|ref|ZP_04150111.1| Foldase protein prsA 1 [Bacillus pseudomycoides DSM 12442]
 gi|228769579|gb|EEM18171.1| Foldase protein prsA 1 [Bacillus pseudomycoides DSM 12442]
          Length = 281

 Score = 76.6 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/299 (11%), Positives = 88/299 (29%), Gaps = 45/299 (15%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
            ++      +++  +   S +I T+  G+ I+  D+ K++             K  ++ +
Sbjct: 4   AMLALAATSLIALSACGSSDKIVTSKAGD-ISKEDLYKQMK--------DRAGKQILRGM 54

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           ++E +  +         D                   + F + L +QG   + FK+ +  
Sbjct: 55  VLEKVLLKNHTVDDKEVDKKYD--------EYKKQLGDQFDAALKQQGFTKDSFKESVRA 106

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           +      +++    K      +       +                            + 
Sbjct: 107 ELAMDKAIESSITDKELKENYKPEIKASHILVKD------------------------EA 142

Query: 201 RIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT 258
             K  +E   +        ++++         G   Y     +  +F +   K  ++  +
Sbjct: 143 TAKKVKEELGQGKSFEELAKQYSEDKGSAEKGGDLGYFGPGKMVKEFSDAAYKLKKDEVS 202

Query: 259 NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRSNAIIH 315
            P  +Q G   I + D ++       KA +       K +  +  AE   K    A + 
Sbjct: 203 EPVKSQFGYHIIKVTDIKEQKSFEEEKANIKKGLVEKKKQDPQFMAELQDKELKKADVK 261


>gi|227499598|ref|ZP_03929705.1| possible peptidylprolyl isomerase [Anaerococcus tetradius ATCC
           35098]
 gi|227218357|gb|EEI83611.1| possible peptidylprolyl isomerase [Anaerococcus tetradius ATCC
           35098]
          Length = 249

 Score = 76.6 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/275 (10%), Positives = 80/275 (29%), Gaps = 45/275 (16%)

Query: 37  AMSSRIRTTINGEVITDGDISKRIALLKLQK--INGELEKIAVQELIVETLKKQEIEKSG 94
             ++++   +NG+ I   D+ + +  ++  +   + E   I   E+I + +   +    G
Sbjct: 3   EDTNKLLAEVNGKKIYQEDVYQLMQNIEDNQRFNSEEGLHILADEMINQEILLADAYNEG 62

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
              D   V+                                  L   ++  +   +    
Sbjct: 63  YDKDKEFVDEL-------------------------------ELVKNNMLKNYAMHKIFE 91

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
           +    E E+    +  K       L       + D             +  +E   +  +
Sbjct: 92  QVKLDEAEVKQYYEANKETLNPPVLYEASHILVNDLAEA---------QKIKEEIDKGLE 142

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAIC 273
                +K++      + G      +  +  +FQ+     +    + P  +Q G   I + 
Sbjct: 143 FAVAAKKYSIDPSKANGGSLGKFPKGVMVKEFQDGLDSINIGEVSKPIKSQFGYHLIKLE 202

Query: 274 DKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
           +K   D      +K  +  +    K ++   + + 
Sbjct: 203 NKENVDTPSFDKIKDQVYQRLLMVKRQEAYLDKLS 237


>gi|56479244|ref|YP_160833.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aromatoleum
           aromaticum EbN1]
 gi|56315287|emb|CAI09932.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aromatoleum
           aromaticum EbN1]
          Length = 633

 Score = 76.6 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/201 (8%), Positives = 53/201 (26%), Gaps = 11/201 (5%)

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
               L  +    + D          +  A   ++    +N  + +    + EI    +  
Sbjct: 201 AQVELPDDAAKKYYDANPERFERPARLRAEYLVFD---ENALLKQVSVSDDEIRKFYEAN 257

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH--- 227
                +          I          V K  + A     ++  +  +  + A       
Sbjct: 258 TARFGQPEERNARHILIEAAADAPAEEVAKASEKAAALLAQVRANPERFAELAKAESQDP 317

Query: 228 --DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG--GEI 282
                 G+  +     +   F++ +    +   ++   +  G   I + D +        
Sbjct: 318 GSAARGGELGFFGRGAMVKSFEDAVFSLEKGQISDVVRSDFGFHIIQVVDIKPAKARPFE 377

Query: 283 ALKAYLSAQNTPTKIEKHEAE 303
            ++  ++ +       +  AE
Sbjct: 378 EVRDEIAEELKRQAASRRLAE 398



 Score = 53.1 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 62/235 (26%), Gaps = 17/235 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   V    +  I  +    +++ F    + SY +         T+ G  I+  +  + +
Sbjct: 1   MFDAVRN--NKRIAQIILALLIVPFAFFGLDSYFTSGPGGNEIATVGGSKISMNEFDQAL 58

Query: 61  ALLKLQKIN-------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
              + +                  + +  V+ L+ + L       SG+      +     
Sbjct: 59  RDQQDRLRQSMGGQVDRAMLESEAMRRSVVENLVNQRLLAMHAADSGLVVTQQQLQQVIA 118

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
                          +             + A   +  D+      L  G       A+ 
Sbjct: 119 TVPAFQEDGRFSLERYEAAVRAQGMTPAMFEAR--LGQDLRVQQVALAVGQSAFTAQASV 176

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           Q+     + E  +  + FS      Q +       K  + +  R  +      ++
Sbjct: 177 QRFLEAQLEERKVSELKFSPDAFLAQVELPDDAAKKYYDANPERFERPARLRAEY 231


>gi|281423985|ref|ZP_06254898.1| peptidyl-prolyl cis-trans isomerase [Prevotella oris F0302]
 gi|281401910|gb|EFB32741.1| peptidyl-prolyl cis-trans isomerase [Prevotella oris F0302]
          Length = 477

 Score = 76.6 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/297 (10%), Positives = 79/297 (26%), Gaps = 37/297 (12%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           V+I   ++   S      +  +  T+NG+ +   +                         
Sbjct: 7   VIISLAMLLYGSMAFSQSNDPVVMTVNGKPVLRSEFEYAYR------------------- 47

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
                     + +            + +   +  L  E   +                  
Sbjct: 48  ----------KNNSAGVIDRKSVEEYAELFIDYKLKVEAALAAQLDTLTSFKEEFAGCRD 97

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG-FVQ 199
           Q I P ++              I    Q   +       +R +L  +     ++    V+
Sbjct: 98  QQIRPSLIN---DADIEAEARRIYTLTQHQVDSLGGMVKVRHILLGLGQRAPKSTETEVK 154

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESD-LHPQFQNLLKKSQNNT 257
           +RI    ++            K++      ++ G   +L     L        +  +   
Sbjct: 155 QRIDSIYKALKAGADFSEMARKYSDDKGSALAGGSLPWLQPGQTLPEFEAQAYRLKKGEM 214

Query: 258 TNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT-KIEKHEAEYVKKLRSNAI 313
           + P+++  G   I + DK +     +L+  +          +K   + + + R+ A 
Sbjct: 215 SLPFLSPAGYHIILLEDKSNFLPYDSLRNDILCFIDQRNLRDKLIDDRLNE-RAQAT 270


>gi|332143233|ref|YP_004428971.1| Parvulin-like peptidyl-prolyl isomerase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327553255|gb|AEA99973.1| Parvulin-like peptidyl-prolyl isomerase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 264

 Score = 76.6 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 75/278 (26%), Gaps = 37/278 (13%)

Query: 44  TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            T+NG+ I+   I   +     +     + K A   +I E + ++ +EK           
Sbjct: 9   ITVNGKTISAAMIDAEVQYHPAESRRQAMVKAAETLIIGELVTQKAMEKGIPL------- 61

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
                                                Q I   +     + +    E E 
Sbjct: 62  --------------------------NPKSDAIEQNSQLIDSLLASEVCVPEATTEECER 95

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD-CNKLEKF 222
             +  K    T        +L +     L+++        +                ++F
Sbjct: 96  YYSANKGTFKTAPLIEASHILIASDPKDLEHRAESHALAVNLIHKLQGGESTLGELAKQF 155

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGG- 280
           +S       G    L       +F+  +   S+     P  T+ G   + +  K D    
Sbjct: 156 SSCPSKDVDGSLGQLSYGQTVREFERQVFAASEGLMPQPVETRYGYHVVLVARKVDGKPL 215

Query: 281 -EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
               ++  +          K  ++Y+ +L S A I  +
Sbjct: 216 SFDMVREKIKQYLNDKVHRKALSQYLHRLVSEADIQGF 253


>gi|307565748|ref|ZP_07628217.1| PPIC-type PPIASE domain protein [Prevotella amnii CRIS 21A-A]
 gi|307345574|gb|EFN90942.1| PPIC-type PPIASE domain protein [Prevotella amnii CRIS 21A-A]
          Length = 466

 Score = 76.6 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/285 (9%), Positives = 73/285 (25%), Gaps = 20/285 (7%)

Query: 33  YKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--GELEKIAVQELIVETLKKQEI 90
                +   +   +  E I   ++       + +     G+ E +  +++ V+ L   + 
Sbjct: 33  ISKKNIIDEVIWVVGDEPILRSEVEITKLQGEAEGTKWAGDPEYLIPEQIAVQKLFLHQA 92

Query: 91  EKSGITFDSNTVNYFFVQHARNTG--LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
               +T   + +     Q                  + Q       +Q L        +V
Sbjct: 93  ALDSLTITESEIYQGVEQQINYWISLPQIGSKERLEEFQHKSLAQIRQDLHDDYKNRQLV 152

Query: 149 KN---DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
           +      +        E+     K+   ++     +  +  +          + +     
Sbjct: 153 QKMQEKLVSDIKVSPSEVRTYFNKIPIDSIPIVPTQVEVEILTQTPKIEVEEINRIKNQL 212

Query: 206 EESRLRLPKDCNKLEKFASKIH-----DVSIGKAQYLLESDLHPQFQNLLKKSQN--NTT 258
            +   R+       E  A             G+  ++  + L P F        +    +
Sbjct: 213 RDYTNRINNGETTFETLARLYSEDPGSARQGGELGFIGRASLDPAFAGAAFNLTDPKKIS 272

Query: 259 NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAE 303
               ++ G   I + DKR           +       K+ +   +
Sbjct: 273 KIVESEFGYHIIQLIDKRGDKIN------VRHILLKPKVSQAAID 311


>gi|91202358|emb|CAJ75418.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 318

 Score = 76.6 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 83/289 (28%), Gaps = 13/289 (4%)

Query: 29  PIVSYKSWAMSSR-IRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKK 87
            IV     +   + +   +NG+ IT  ++ + +               A+  LI  TL  
Sbjct: 33  SIVLVSKESKEDKDVVAIVNGQKITSNELYELL--------LSTYGNEALDVLIRRTLIN 84

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           QE  K GI+  +  V        +    +        ++  +     K   +++     +
Sbjct: 85  QEARKHGISLTTKEVENKINTLVQREVNALLQTYKIENEADLDKELEKIGASLKEFKDKL 144

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
            K         L  E    K    +    +   +++     + +       ++  +  E+
Sbjct: 145 TKRLVKEAEIELRAEKVVMKTISVSEEDLQEAYKSIYGEKIEAQQIVLKTKREAEEALEK 204

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGV 267
            RL          +   +      GK       D     +++        +    T  G 
Sbjct: 205 LRLGADITKMAKAQSIDRASASRDGKMLPFSPED--DIGKSVAHLKPGELSGIINTNYGY 262

Query: 268 EYIAICDKRDLGG--EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             + I  ++         +K  L       K  +    ++  L  +A I
Sbjct: 263 HIVKITGRKTGSDKKFDTVKKELEELVREKKYRERLRPWLVNLVESASI 311


>gi|291483469|dbj|BAI84544.1| molecular chaperone [Bacillus subtilis subsp. natto BEST195]
          Length = 294

 Score = 76.6 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/306 (11%), Positives = 89/306 (29%), Gaps = 45/306 (14%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +  I     +      +    +    +   +T G++   +               
Sbjct: 1   MKKIAIAAITATSILALSACSSGDKEVIAKTDAGDVTKGELYTNMK--------KTAGAS 52

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            + +L+ E +                 +       +       D  + L+KQ   D    
Sbjct: 53  VLTQLVQEKVL---------DKKYKVSDKEIDNKLKEYKTQLGDQYTALEKQYGKDY--- 100

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             L  Q  +  + +          + EI    + +K      ++                
Sbjct: 101 --LKEQVKYELLTQKAAKDNIKVTDDEIKEYWEGLKGQIRASHI---------------L 143

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESD---LHPQFQNLLK 251
              +K  ++ E+   +  K     +++++      + G+  ++ + +        +   K
Sbjct: 144 VADKKTAEEIEKKLKKGEKFDALAKEYSTDTGSATNGGELGWISKDNEQLDSTFRKAAFK 203

Query: 252 KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLR 309
              N  ++P  TQ G   I   ++R  G    +K  L ++    K+       E V+K+ 
Sbjct: 204 LKTNEVSDPVKTQFGYHIIKKTEER--GKYDDMKKELKSEVLEQKLNDSNAVQEAVQKVM 261

Query: 310 SNAIIH 315
             A I 
Sbjct: 262 KKADIE 267


>gi|86153246|ref|ZP_01071450.1| foldase protein PrsA [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|121612905|ref|YP_001000297.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005249|ref|ZP_02271007.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|143955293|sp|A1VYV6|CBF2_CAMJJ RecName: Full=Cell-binding factor 2; AltName: Full=Major antigen
           peb4A; Flags: Precursor
 gi|85842972|gb|EAQ60183.1| foldase protein PrsA [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|87250443|gb|EAQ73401.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 273

 Score = 76.6 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 92/299 (30%), Gaps = 35/299 (11%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
                  +++  +  +++    T+NG+ I+D ++S+  A +   +    L     + LI 
Sbjct: 4   FSLVAAALIAGVALNVNAATVATVNGKSISDAEVSEFFAPMLRGQDFKTLPDNQKKALIQ 63

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           + + +  I +     +                                    +   A  +
Sbjct: 64  QYIMQDLILQDAKKQNLEKD---------------------------PLYTKELDRAKDA 96

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           I  +V +   +        ++ A   + K+  V+   ++     +   K       + + 
Sbjct: 97  ILVNVYQEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKG 156

Query: 203 KDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNN--TTN 259
              +E   +        ++ +         G+  +  +S +   F +     +N   TT 
Sbjct: 157 LKGKELDAKFS---ELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTT 213

Query: 260 PYVTQKGVEYIAICD--KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           P  T  G   I   +   +       +K  +       + +K   +  + L ++A + Y
Sbjct: 214 PVKTNFGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDLLNSAKVEY 272


>gi|260909468|ref|ZP_05916172.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260636393|gb|EEX54379.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 474

 Score = 76.6 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/291 (9%), Positives = 75/291 (25%), Gaps = 34/291 (11%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
            +   +   ++ + A       TING  I+  +             +  ++K  V + + 
Sbjct: 5   ALSVALLFCAFVAHAQDDPTIMTINGRPISRSEFEYSYN---KNNTDNVVDKKTVAQYVD 61

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
             +  +   ++ +    +T   F  + A              D               + 
Sbjct: 62  LFVNYKLKVEAALAARLDTTQAFRNEFADYRDQQVRPSFVTSDDMEKAARQLYDDTRQRV 121

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
                                               +   +L        + Q   + RI
Sbjct: 122 ----------------------------DGQGGLIRVAHIMLMLPQKASKEAQNRAELRI 153

Query: 203 KDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNP 260
                +  R         K +         G+  +L +     +F++          + P
Sbjct: 154 DSIYNALKRGADFATLARKLSDDKGSAQQGGELPWLQKGQTLKEFEDAAFALKPGEISKP 213

Query: 261 YVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT-KIEKHEAEYVKKLRS 310
            ++  G   I + ++R      ++KA + A    +   E+     + ++  
Sbjct: 214 VLSPAGYHVIKLIERRMFLPYDSVKADILAYIEQSGMREQIIDNKLNEMAK 264


>gi|321314718|ref|YP_004207005.1| molecular chaperone lipoprotein [Bacillus subtilis BSn5]
 gi|320020992|gb|ADV95978.1| molecular chaperone lipoprotein [Bacillus subtilis BSn5]
          Length = 294

 Score = 76.6 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/306 (12%), Positives = 90/306 (29%), Gaps = 45/306 (14%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +  I     +      +    +    +   +T G++   +               
Sbjct: 1   MKKIAIAAITATSILALSACSSGDKEVIAKTDAGDVTKGELYTNMK--------KTAGAS 52

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            + +L+ E +                 +       +       D  + L+KQ   D    
Sbjct: 53  VLTQLVQEKVL---------DKKYKVSDKEIDNKLKEYKTQLGDQYTALEKQYGKDY--- 100

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             L  Q  +  + +          + EI    + +K      ++                
Sbjct: 101 --LKEQVKYELLTQKAAKDNIKVTDDEIKEYWEGLKGQIRASHI---------------L 143

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLES--DLHPQFQNLLKK 252
              +K  ++ E+   +  K     +++++      + G+  ++ +    L   F+    K
Sbjct: 144 VADKKTAEEIEKKLKKGEKFDALAKEYSTDTGSATNGGELGWISKDNEQLDATFRKAAFK 203

Query: 253 -SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLR 309
              N  ++P  TQ G   I   ++R  G    +K  L ++    K+       E V+K+ 
Sbjct: 204 LKTNEVSDPVKTQFGYHIIKKTEER--GKYEDMKKELKSEVLEQKLNDSNAVQEAVQKVM 261

Query: 310 SNAIIH 315
             A I 
Sbjct: 262 KKADIE 267


>gi|270263574|ref|ZP_06191843.1| putative protease maturation protein [Serratia odorifera 4Rx13]
 gi|270042458|gb|EFA15553.1| putative protease maturation protein [Serratia odorifera 4Rx13]
          Length = 627

 Score = 76.3 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/399 (9%), Positives = 103/399 (25%), Gaps = 88/399 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  + +  +  +    +++ F +  +VSY+  A        +NG+VI    + +  
Sbjct: 1   MMDNLRAAANHVVLKIILGLIILSFLLTGVVSYQGSAG--DYAAKVNGQVIERAQLEQAF 58

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                    ++   A+ +LI   L  Q  +K G++   + V  
Sbjct: 59  QSERSRMQQQLGDQFSALAGNEGYMQQMRHQALSQLIDNMLLDQYAKKLGLSVSDDQVKD 118

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                     N       +   + + G   ++F Q +  Q +   V++            
Sbjct: 119 AIRKAPYFQTNGQFDNAKYLDLISRMGYTADNFAQSMRQQLVNQQVIQAFGQSGFVLPSE 178

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL---- 184
                                     K    + E+     + KN  +    ++       
Sbjct: 179 SQGMAALVLQERNVRLATLDLKALQAKQTVTDDELKDYYSQNKNSFIAPEQVKVSYIPLD 238

Query: 185 ---------------------------FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
                                           N    Q   +       +   +      
Sbjct: 239 AASMQDKVTVADADISAYYDQHKSSYGQPERKNYSVIQLKTEAEANAVLDELKKGGDFAT 298

Query: 218 KLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK- 275
             ++ ++  I   + G+  +L       + +      +   +    +  G   + + D  
Sbjct: 299 LAKEKSTDIISRRTGGELGWLEPETTADELKQANLTEKGQLSGVVKSSVGYLVVRLNDIA 358

Query: 276 -RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
              +     ++  ++ Q    K         +K+   A 
Sbjct: 359 PEKVKPLSEVRDDIAKQVKQEKAVDAYYALQQKVSEAAT 397


>gi|228951513|ref|ZP_04113619.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228808220|gb|EEM54733.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 290

 Score = 76.3 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/304 (12%), Positives = 94/304 (30%), Gaps = 41/304 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S +I T+  G+ IT  +  +++        N +  K 
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKIVTSKAGD-ITKEEFYEQMK-------NSQTGKQ 52

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +++E +  +  +      D                   + F + + +QGI +   K
Sbjct: 53  TLNNMVMEKVLIKNYKVEDKDVDKKFD--------EMKKQYGDQFDTLMKQQGIKEETIK 104

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +  Q      V+     K    + E    + K  +I V++                  
Sbjct: 105 NSVRAQLAQEKAVEQSITDKDLKAKFEDYKKEIKASHILVKD------------------ 146

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              ++  K  ++   +        ++++         G   +     +  +F+   +K  
Sbjct: 147 ---EETAKKVKDELAQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGKMVKEFEEAAQKLK 203

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRSN 311
           +   + P  TQ G   I + D          KA +       K +  +   + + K    
Sbjct: 204 KGEVSEPVKTQFGYHIIKVTDNHADATFDKAKADIKKALVQEKTQDAQFMNDLMMKEIKK 263

Query: 312 AIIH 315
           A + 
Sbjct: 264 ADVK 267


>gi|157414878|ref|YP_001482134.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157385842|gb|ABV52157.1| cell binding factor2 (major antigen PEB4A) [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|307747515|gb|ADN90785.1| Cell-binding factor 2 [Campylobacter jejuni subsp. jejuni M1]
          Length = 273

 Score = 76.3 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 92/299 (30%), Gaps = 35/299 (11%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
                  +++  +  +++    T+NG+ I+D ++S+  A +   +    L     + LI 
Sbjct: 4   FSLVAAALIAGVALNVNAATVATVNGKSISDTEVSEFFAPMLRGQDFKTLPDNQKKALIQ 63

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           + + +  I +     +                                    +   A  +
Sbjct: 64  QYIMQDLILQDAKKQNLEKD---------------------------PLYTKELDRAKDA 96

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           I  +V +   +        ++ A   + K+  V+   ++     +   K       + + 
Sbjct: 97  ILVNVYQEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKG 156

Query: 203 KDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNN--TTN 259
              +E   +        ++ +         G+  +  +S +   F +     +N   TT 
Sbjct: 157 SKGKELDAKFS---ELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTT 213

Query: 260 PYVTQKGVEYIAICD--KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           P  T  G   I   +   +       +K  +       + +K   +  + L ++A + Y
Sbjct: 214 PVKTNFGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDLLNSAKVEY 272


>gi|241589917|ref|YP_002979942.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
           12D]
 gi|240868629|gb|ACS66288.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
           12D]
          Length = 278

 Score = 76.3 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/311 (10%), Positives = 83/311 (26%), Gaps = 55/311 (17%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
           T      +  +    ++     +S +  T+NG  IT   + + +A          + +  
Sbjct: 8   TLATAAGLMLLAASHAWADGLPAS-VVATVNGTPITQAQLDRAVAQTGAGANP-NVVQAL 65

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
            Q+LI   L +Q+  K+        V                                 +
Sbjct: 66  KQQLIARELFRQQAAKNPAYEKQPAVQQAV-----------------------------K 96

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
                +I    +K++        E         + ++  +EY  R +         Q   
Sbjct: 97  EAHDAAITQLWLKDNIRPSPVTDEQVKARYDAIVASLGDKEYKARVIQVGDDVTASQVIA 156

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL---------LESDLH-PQF 246
            +++                   +++++  +    G+  ++             +  P  
Sbjct: 157 QLKQ-----------GGDFAKLAQQYSTAPNKARGGEMDWVSFKVPVEDGKTQSMPLPLA 205

Query: 247 QNLLKKSQNNTT-NPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAE 303
             +        +  P         + +   R   +    A+K  +       ++E+   +
Sbjct: 206 HEITTLQPGAVSAAPVDAGNQRFIVKVDSVRPTQVPAFDAVKPAIKQALETAELERATVQ 265

Query: 304 YVKKLRSNAII 314
            V  L   A +
Sbjct: 266 VVGGLLKTAKV 276


>gi|15595896|ref|NP_249390.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Pseudomonas
           aeruginosa PAO1]
 gi|254239075|ref|ZP_04932398.1| hypothetical protein PACG_05257 [Pseudomonas aeruginosa C3719]
 gi|9946581|gb|AAG04088.1|AE004505_9 probable peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Pseudomonas aeruginosa PAO1]
 gi|126171006|gb|EAZ56517.1| hypothetical protein PACG_05257 [Pseudomonas aeruginosa C3719]
          Length = 314

 Score = 76.3 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 68/245 (27%), Gaps = 6/245 (2%)

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           ++A  EL     +     ++ ++ + + +  +         L  +  +    ++      
Sbjct: 55  QVAPDELKALLAEVPAETRAQLSENRDAMERWMRARLAEKALYEQASAQDWQQRPQVKTL 114

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                    +   +     + +    + E+ A  Q  K       L R     I  +   
Sbjct: 115 IDAAARQIVLRTYLESVSTVPEDYPSDAELQAAYQANKAQLAVPALYRVSQIFIAASAAG 174

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESD--LHPQFQNLL 250
                +KR ++                K +       + G    LL     L      L 
Sbjct: 175 GLAEARKRAQELYRQAADG-DFAELARKHSDDPQTARNGGDIGGLLAQAQLLPAIRPALE 233

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
           +      + P     G   + + ++RD        ++  L       + E+    Y+  L
Sbjct: 234 RLKVGAVSEPIQGANGFHLVKLTERRDARLATLDEVRGRLRESLRAQRQEQIAKAYLDGL 293

Query: 309 RSNAI 313
            +NA 
Sbjct: 294 VNNAT 298


>gi|332882741|ref|ZP_08450352.1| PPIC-type PPIASE domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332679243|gb|EGJ52229.1| PPIC-type PPIASE domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 463

 Score = 76.3 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/292 (10%), Positives = 76/292 (26%), Gaps = 15/292 (5%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--INGELEKIAVQELIVETLKKQE 89
           +         +   +   +I + DI K    LK Q+           + +L+ + L   +
Sbjct: 34  AQSERKKVDGVAAVVGDYLILESDIDKAYIDLKQQEVDTKNITRCQMLGKLMEDKLYAHQ 93

Query: 90  IEKSGITFDSNTVNYFFVQH-----ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
             +  +      V     Q      A+  G   +    +              L   +  
Sbjct: 94  AVQDSVKLTDAEVREQVNQRIEYLTAQLGGDIKKLLEFYKKDDEQSMREELFTLFKVNTL 153

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
              ++   +        E+      +       +     +  I  N +     VQK I  
Sbjct: 154 AQRMRQQIVKDVEVTPEEVRNFFNAIPADERPHFGTELEIAQIVVNPVAPPSAVQKVIDL 213

Query: 205 AEESRLRLPKDCNKLEKFASKIHDV--SIGKAQYLLESD--LHPQFQNLLKKSQNNTTNP 260
             + +  + ++       A        + G+      +               +   + P
Sbjct: 214 LNDIKKDVEENGMSFATKAILYSQDRATGGQLLTFNRNSAFDKAFKDVAFTLREGEISKP 273

Query: 261 YVTQKGVEYIAICDKRDLGGEIALKAYLSAQN-TPTKIEKHEAEYVKKLRSN 311
           + +  G   I +   R   G+     ++      P +      E + K+R  
Sbjct: 274 FESSFGWHIIQMDKIR---GKEVSVRHILIMPDIPQEALDEAKEKIAKIRDR 322


>gi|269468957|gb|EEZ80538.1| Parvulin-like peptidyl-prolyl isomerase [uncultured SUP05 cluster
           bacterium]
          Length = 613

 Score = 76.3 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/395 (9%), Positives = 107/395 (27%), Gaps = 83/395 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M S +      ++  L    + + F +  I  Y     S+ I  +I+G+ I+  D     
Sbjct: 1   MLSSIRNKTKGWLAYLIVGLITVPFALFGINEYF-TGTSNIIVASIDGDEISKEDFLNEF 59

Query: 61  ALLKLQKIN-----------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ- 108
              K +                L++  +++++   L  Q  +       S  +       
Sbjct: 60  NPQKRRLQQRLSERYDTEFDAVLKQSVMRDMVNRRLLSQFSDGLDYATTSVELQAMIQSN 119

Query: 109 --HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK----------------- 149
                +   S + +   L   G     ++     +     +                   
Sbjct: 120 DLFQVDGKFSIDTYQKLLRLNGYSTAEYESIKLKELTQSQIKYNFLDSAFITPSALKNLQ 179

Query: 150 --NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
             ND   K+  ++++      K+K              +   +  + +    +   +   
Sbjct: 180 ALNDQQRKFSYIQIDADNYLDKVKVNVKSVKDFYNNQKASFFDPQKVKIDFVELSLEKIA 239

Query: 208 SRLRLPKDCNK-----------------------------------------LEKFASKI 226
             +++  D                                              K A + 
Sbjct: 240 KNIKINDDELFNFYEDEKDRFTTEGERKAQHILVQTQETAKKVVGLINAGGDFAKLAKEY 299

Query: 227 HDVSI-----GKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKRD--L 278
            + +      G   +  +  + P+F+  +    +   +    ++ G   I +   +   +
Sbjct: 300 SEDTGSKDDAGDLGFFTKGVMVPEFETKVFGMQEGEVSGAVKSEFGYHIIKLNKIKPGSV 359

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
               + ++ L+   T  +++K   +   +L + A 
Sbjct: 360 KSFESARSELTKLYTQNQVQKSLYDLTDQLANLAY 394


>gi|315637986|ref|ZP_07893171.1| SurA domain protein [Campylobacter upsaliensis JV21]
 gi|315481834|gb|EFU72453.1| SurA domain protein [Campylobacter upsaliensis JV21]
          Length = 298

 Score = 76.3 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 93/296 (31%), Gaps = 32/296 (10%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           I+  ++  V+  +  + + +   +  E IT+ DI + + LLKL        + A+  LI 
Sbjct: 30  ILMILLFFVAIVNAKVLNSVALVVEKEPITNYDIEQTMKLLKL------PREQALAVLIN 83

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           E ++  +I++  I  +   V+    +      ++ E F + L  +G     F+  L    
Sbjct: 84  EKMELSQIKQFSIVVNELEVDAAISKILTQNKMNLEQFKNSLKAKGQNYELFRHNLKKDL 143

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
               + +    +   +   E      +        Y    V     +++   +     + 
Sbjct: 144 EKRKLYEKIASMNKTDFSEESAKKFFEANKEKFLFYTSIDVKIYRSNDQAILEKMKADKK 203

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYV 262
              +   + L                                    L +      +    
Sbjct: 204 ITLKAQNVNLNPHNAD------------------------PRLLALLSQLKIGEFSPVLN 239

Query: 263 TQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +++G E   +  K   ++     +K  +       + + +  +Y  KLRS   I Y
Sbjct: 240 SKEGFELYEVMAKGGANVPEFEQIKDSVMNVYFNEQRQNYIQDYFDKLRSKLNIEY 295


>gi|325266978|ref|ZP_08133648.1| cis-trans isomerase [Kingella denitrificans ATCC 33394]
 gi|324981478|gb|EGC17120.1| cis-trans isomerase [Kingella denitrificans ATCC 33394]
          Length = 317

 Score = 76.3 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/318 (10%), Positives = 101/318 (31%), Gaps = 17/318 (5%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMS----SRIRTTINGEVITDGDISKRIALLKLQ----- 66
           +     L    +V +    + A      + I   IN  +IT  DI + +   K +     
Sbjct: 1   MKPIRTLAAAVLVGLSLQTAGAAEIKPLNSIAIEINSSIITYRDIERVVREFKSRPGNKD 60

Query: 67  KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
               +L + A   L+   L         +      ++    + A     + ++  +    
Sbjct: 61  IPEAQLVQAAKNTLVERALLADAARAQDLKATPAGIDAELERRAAAGKTTVQNIYAQAAA 120

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV-----REYLIR 181
            G     ++  +A   +   +++N         + ++ A   +++            +  
Sbjct: 121 LGYTREAYRTEVAKDLLITYMLQN-LNSNIKITDEQVQAALNELQAKGQAPTGEPYTVYT 179

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
                +     Q+   V +RI+    +  +        ++++ ++   + G    + +  
Sbjct: 180 IRRVILNAANQQHMPAVGQRIQQIATAIAQGSDFGAVAQRYSQEVQAANQGLHDNITDMM 239

Query: 242 LHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEK 299
           L    +    +      T P       + + +   R       ++   +         E+
Sbjct: 240 LPENVEAALHQLQPGQITPPLRAGNSWQIVQLIGARTENDPAKMQREAVRRMLVRQAQER 299

Query: 300 HEAEYVKKLRSNAIIHYY 317
           ++A+++ +L+  A++  Y
Sbjct: 300 NQAQFMAQLQQMAVVREY 317


>gi|254244936|ref|ZP_04938258.1| hypothetical protein PA2G_05813 [Pseudomonas aeruginosa 2192]
 gi|126198314|gb|EAZ62377.1| hypothetical protein PA2G_05813 [Pseudomonas aeruginosa 2192]
          Length = 314

 Score = 76.3 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 68/245 (27%), Gaps = 6/245 (2%)

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           ++A  EL     +     ++ ++ + + +  +         L  +  +    ++      
Sbjct: 55  QVAPDELKALLAEVPAETRAQLSENRDALERWMRARLAEKALYEQASAQDWQQRPQVKTL 114

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                    +   +     + +    + E+ A  Q  K       L R     I  +   
Sbjct: 115 IDAAARQIVLRTYLESVSTVPEDYPSDAELQAAYQANKAQLAVPALYRVSQIFIAASAAG 174

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESD--LHPQFQNLL 250
                +KR ++                K +       + G    LL     L      L 
Sbjct: 175 GLAEARKRAQELYRQAADG-DFAELARKHSDDPQTARNGGDIGGLLAQAQLLPAIRPALE 233

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
           +      + P     G   + + ++RD        ++  L       + E+    Y+  L
Sbjct: 234 RLKVGAVSEPIQGANGFHLVKLTERRDARLATLDEVRGRLRESLRAQRQEQIAKAYLDGL 293

Query: 309 RSNAI 313
            +NA 
Sbjct: 294 VNNAT 298


>gi|296273396|ref|YP_003656027.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Arcobacter
           nitrofigilis DSM 7299]
 gi|296097570|gb|ADG93520.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Arcobacter
           nitrofigilis DSM 7299]
          Length = 297

 Score = 76.3 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 92/299 (30%), Gaps = 9/299 (3%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           +++ +  +VS  S   +S I   +NG  +T          L  Q     L K+  + L+ 
Sbjct: 4   LVYTLSIVVSLFSSTYASDILAVVNGGNVTSEVAPNNFKTLDNQIQKNILNKLIEKRLVS 63

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           +   K +I KS                  N   +         K   G    +       
Sbjct: 64  DYALKTDIVKSEEYKKVLKHILKMSDENDNKEGNENLADIVKQKSIKGYTQEQLNSKKGL 123

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           +  D +      +    + E+       +        I           ++     ++ I
Sbjct: 124 LAFDFLLTQKAEQLLPSDKELEKYYNDRRYKYDTPAQIEL-----LSIVVEKLSLAKEII 178

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT--TNP 260
           K  + ++  L +     +K++      + G    +  S L+ +   +LK  +       P
Sbjct: 179 KKLQNAKDILQEFSILAKKYSLAPTAKNSGYFGKIPLSVLNSELSPILKDKKRGFFTNKP 238

Query: 261 YVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
             T+ G E   I +           +K  +  +     ++      +K+L+  A+I  Y
Sbjct: 239 IKTEFGYEIFYILNDIPEYNSTFEGVKDKVKEEYVKKTVKTWAINKIKELKEKAVIKIY 297


>gi|228988998|ref|ZP_04149028.1| hypothetical protein bthur0001_56200 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228770720|gb|EEM19255.1| hypothetical protein bthur0001_56200 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 299

 Score = 76.3 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/311 (13%), Positives = 96/311 (30%), Gaps = 37/311 (11%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +   +K L    + +             + S       +   I+  ++  R+        
Sbjct: 1   MKSSVKQLIMTGLAVGSLTFVSGCSLFDSDSVEYAAKTDSGTISKDELYNRMV------- 53

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             ++ +  + +LI  T+ +++ + S    D                L +E  +SF D   
Sbjct: 54  -DKIGQRTLDDLITLTVLQKKYKVSDGEIDDEIKR-----------LKSEFGNSFNDFLS 101

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
               + ++ L        + +   +      + ++ A          ++  IR     + 
Sbjct: 102 QNGVNNEEQLKDVIKLDKLKQKLALEHLKIQDKDLKALY------EQKKPEIRVSHILVS 155

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQ 247
           D  L      +                 +  ++F+         G   Y  E D+   FQ
Sbjct: 156 DETLAKDIKSK---------IDSGEDFGSLAKEFSQDIATKEKGGDIGYFKEGDMVQAFQ 206

Query: 248 NLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH-EAEYV 305
           +  +K      + P  T+ G   I + D++ L     +K  L ++    K+++      +
Sbjct: 207 DAARKLKVGEVSQPVKTEFGYHVIKLLDEKKLPSFEQMKPQLQSELISNKMDQAKINAEI 266

Query: 306 KKLRSNAIIHY 316
           +KL     I  
Sbjct: 267 QKLLDKDNIKI 277


>gi|207722835|ref|YP_002253270.1| ppic-type peptidyl-prolyl cis-trans isomerase protein [Ralstonia
           solanacearum MolK2]
 gi|206588019|emb|CAQ18600.1| ppic-type peptidyl-prolyl cis-trans isomerase protein [Ralstonia
           solanacearum MolK2]
          Length = 278

 Score = 76.3 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/318 (11%), Positives = 89/318 (27%), Gaps = 57/318 (17%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN 69
             F + L     L++F      +     +S+ +  T+NG  IT   + + +A        
Sbjct: 3   RLFPRKLAAAAGLMLFAASQAWA---DGLSAGVVATVNGTPITQAQLDRAVAQTGAGANP 59

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
             + +   Q+LI   L +Q+  K+        V                           
Sbjct: 60  -NVVQALKQQLIARELFRQQAAKNPAYDKQPAVQQAV----------------------- 95

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                 +     +I    +K++        E         + ++  +EY  R +      
Sbjct: 96  ------KETHDAAITQLWLKDNIKPVPVTDEQVKARYDAIVASLGDKEYKARVIQVGDDV 149

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL---------LES 240
              Q    +++                   +++++  +    G+  ++            
Sbjct: 150 TASQVIAQLKQ-----------GGDFAKLAQQYSTAPNKARGGEMDWVSFKVPLEEGKTQ 198

Query: 241 DLH-PQFQNLLKKSQNNTT-NPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTK 296
           ++  P  + +        +  P         + +   R   +    A+K  +       +
Sbjct: 199 NMPLPLAREISTLQPGAVSAAPVEAGSQRFIVKVDSVRPTQVPAFDAVKPAIRQALETAE 258

Query: 297 IEKHEAEYVKKLRSNAII 314
           +E+   + V  L   A +
Sbjct: 259 LERATVQVVGGLLKTAKV 276


>gi|223940711|ref|ZP_03632550.1| PpiC-type peptidyl-prolyl cis-trans isomerase [bacterium Ellin514]
 gi|223890638|gb|EEF57160.1| PpiC-type peptidyl-prolyl cis-trans isomerase [bacterium Ellin514]
          Length = 373

 Score = 76.3 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 40/344 (11%), Positives = 92/344 (26%), Gaps = 43/344 (12%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYK-----------------SWAMSSRIRTTINGEVITD 53
            F+K   T  VL+    V  V++                  S  +  ++     G  +  
Sbjct: 2   KFMKSKKTLGVLLAAATVASVAFAVTDNKPASTNASSTPKLSDLLPDQVIVKGKGFELKQ 61

Query: 54  GDISKRIALLKLQK----------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
             + + ++ +K                 ++K  +  LI   L K +   +         +
Sbjct: 62  SQLDEAVSGVKANASARGQEIPPAQLEMIQKKLLDRLIQIQLFKAKATDADKAEGKKEGD 121

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
             F    +            L KQ        + L  + I     +     K    + ++
Sbjct: 122 NRFEMIKKR-----APSEDMLAKQLKTMGLTVESLHSRLIEEATAEAVLKSKVKISDDQV 176

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE--------ESRLRLPKD 215
                           +R     I  +  +    + +  K A+        +        
Sbjct: 177 KKFYNDNPKDFEEPEQVRASHILISTSDQKTGSEMSEDQKKAKKKQAEDLLKRAKAGEDF 236

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICD 274
               ++F+        G         + P+F+        N  ++   T  G   I + +
Sbjct: 237 GKLAKEFSEDPGSKDKGGEYIFPRGKMVPEFEAAAFSLQTNQVSDIVTTPFGYHIIKLSE 296

Query: 275 KRDLGGEIALK--AYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           K         K    +       ++EK   ++ K+L+  + +  
Sbjct: 297 KIPPHKVELAKVQDDIKGYLEKQEMEKVLPDFYKELKKESNVQI 340


>gi|323343304|ref|ZP_08083531.1| hypothetical protein HMPREF0663_10066 [Prevotella oralis ATCC
           33269]
 gi|323095123|gb|EFZ37697.1| hypothetical protein HMPREF0663_10066 [Prevotella oralis ATCC
           33269]
          Length = 475

 Score = 76.3 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/292 (10%), Positives = 83/292 (28%), Gaps = 34/292 (11%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVE 83
           +F  + + +    A       TI G+ +T  +              G ++K +V E +  
Sbjct: 6   LFAAMLLFAGVVHAQVDPTIMTIGGQPVTRSEFEYSYN---KNNAEGVIDKKSVDEYVDL 62

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            +  +    +      +T++ F  + A                              Q  
Sbjct: 63  FVNYKLKVMAAEAAHLDTLSSFKQEFATYRD-------------------------QQIR 97

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
              +   D   +   +  +       M  +         ++          Q   ++R+ 
Sbjct: 98  PAMITNADVEAEAWRIYSQAQHRVDSMGGLVKPA---HILIGIPQKASQAEQDAAKQRVD 154

Query: 204 DAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPY 261
                  +        +K++S      + G+  ++ +     +F + +    +   + P+
Sbjct: 155 SIYNILKKDGDFAELAKKYSSDVASARNGGELPWIEKGQTLKEFDEKIFSMKKGELSKPF 214

Query: 262 VTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT-KIEKHEAEYVKKLRSNA 312
           +T  G   + + DK       +L+A +          ++     +  L   A
Sbjct: 215 LTPAGYHIVILKDKGKFFPYDSLRADILKFIDQRGLRDEIINHRLDSLAKAA 266


>gi|229167152|ref|ZP_04294895.1| Foldase protein prsA 1 [Bacillus cereus AH621]
 gi|228616386|gb|EEK73468.1| Foldase protein prsA 1 [Bacillus cereus AH621]
          Length = 283

 Score = 76.3 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/306 (11%), Positives = 83/306 (27%), Gaps = 49/306 (16%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
              F+  I   V +      +  +   + +    +T+ ++SK    L+       L ++ 
Sbjct: 4   KKLFMGTIIACVALTLSACGSSENVATSKVGN--VTEKELSKE---LRQTYGKSTLSQMM 58

Query: 77  VQE-LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           + + L+ +     E  K  +      +   F       GL  ED               K
Sbjct: 59  LNKALLDKYKVSDEEAKKQVEAAKEQMGDKFKVALEQVGLKNED-------------ELK 105

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           + +  +      ++     K      +       +                         
Sbjct: 106 ERMKPEIALEKAIRATVTDKDVKDNHKPEMKVSHILVKD--------------------- 144

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              +K  K+ +E            ++++         G+           +F+    K  
Sbjct: 145 ---EKTAKEVKEKINNGEDFTALAKQYSEDTVSKEQGGEIAGFAPGQTVKEFEEAAYKLD 201

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY----VKKLR 309
               + P  T  G   I + DK++L     +K  +       +++    ++    +  L 
Sbjct: 202 AGQVSEPIKTSYGYHIIKVTDKKELKPFDEVKDTIRKDLEQQRLQDATGKWKQQVINDLL 261

Query: 310 SNAIIH 315
             A I 
Sbjct: 262 KEADIK 267


>gi|119897859|ref|YP_933072.1| putative peptidyl-prolyl cis-trans isomerase [Azoarcus sp. BH72]
 gi|119670272|emb|CAL94185.1| putative peptidyl-prolyl cis-trans isomerase [Azoarcus sp. BH72]
          Length = 631

 Score = 76.3 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 19/167 (11%), Positives = 41/167 (24%), Gaps = 8/167 (4%)

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           + +     +    + E+ A          +    R     I  +    +  V K     +
Sbjct: 234 LDEAALAKQVKVSDEEVRAFYDGNPGRFGQPEERRARHILIQVDAGAPEAEVAKAKAAID 293

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSI-----GKAQYLLESDLHPQFQNLLKKSQNNTTNPY 261
           E    L KD  + E  A      S      G   +     +   F++           P 
Sbjct: 294 EIAATLAKDPGRFEALAKASSQDSGSAARGGDLGFFGRGAMVKPFEDAAFGQAKGVVGPV 353

Query: 262 -VTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
             +  G   I + D +           +  +      ++       +
Sbjct: 354 VRSDFGFHIIQVTDIKPAT--TRSLDSVRGEIVDELRKQAAGRRFAE 398



 Score = 63.2 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 13/162 (8%), Positives = 42/162 (25%), Gaps = 15/162 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   V    +  +  +    ++I F    + +Y            ++G  IT  +  + +
Sbjct: 1   MFDAVRN--NKRVAQIILALLIIPFAFFGLDAYFKDGPGGGEVAVVDGAPITAAEFDRAL 58

Query: 61  ALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
              + +  N               L +  ++ ++ + L  +      +      +     
Sbjct: 59  RERQDRLRNEMGGPVDSALLESPALRRAVLETMVSQRLLARYAADRHMVVTPQQLQETIA 118

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
                          + D     +     + A  +    + +
Sbjct: 119 AVEAFHENGQFSLQRYQDVLRAQNMTPAGFEARLAQDVRIQQ 160


>gi|107100164|ref|ZP_01364082.1| hypothetical protein PaerPA_01001186 [Pseudomonas aeruginosa PACS2]
          Length = 314

 Score = 76.3 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 68/245 (27%), Gaps = 6/245 (2%)

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           ++A  EL     +     ++ ++ + + +  +         L  +  +    ++      
Sbjct: 55  QVAPDELKALLAEVPAETRAQLSENRDALERWMRARLAEKALYEQASAQDWQQRPQVKTL 114

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                    +   +     + +    + E+ A  Q  K       L R     I  +   
Sbjct: 115 IDAAARQIVLRTYLESVSTVPEDYPSDAELQAAYQANKAQLAVPTLYRVSQIFIAASAAG 174

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESD--LHPQFQNLL 250
                +KR ++                K +       + G    LL     L      L 
Sbjct: 175 GLAEARKRAQELYRQAADG-DFAELARKHSDDPQTARNGGDIGGLLAQAQLLPAIRPALE 233

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
           +      + P     G   + + ++RD        ++  L       + E+    Y+  L
Sbjct: 234 RLKVGAVSEPIQGANGFHLVKLTERRDARLATLDEVRGRLRESLRAQRQEQIAKAYLDGL 293

Query: 309 RSNAI 313
            +NA 
Sbjct: 294 VNNAT 298


>gi|149924928|ref|ZP_01913258.1| peptidylprolyl cis-trans isomerase [Plesiocystis pacifica SIR-1]
 gi|149814196|gb|EDM73809.1| peptidylprolyl cis-trans isomerase [Plesiocystis pacifica SIR-1]
          Length = 397

 Score = 76.3 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/316 (12%), Positives = 85/316 (26%), Gaps = 47/316 (14%)

Query: 41  RIRTTINGEVITDGDISKRI-----ALLKLQKI-------NGELEKIAVQELIVETLKKQ 88
            +  T+    I   D   R       LL+ +              +  +  LI   L   
Sbjct: 72  EVLATVGDRSIPKADFLARYEPEATKLLERRDDGKVPDAYQAMQREKIIDALIWSELMAL 131

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
           E E+SG+      +     +          D++++L++ G      +           ++
Sbjct: 132 EAERSGVDVSPEKLAEEEGKQKA----HVADWNAWLERIGQTPEIRQAMTRDYLRERALI 187

Query: 149 KNDFMLKYGNLEMEIP---ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
           +          E E+        K   +T  + + R   F I     +    +Q      
Sbjct: 188 EAR-KGPIEATEEELRAAYDESIKAGRLTAPQPMARASHFLITYGPREGDEKIQPVPFKQ 246

Query: 206 EESRLR------------------------LPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
            E   +                                 +++        G      ++ 
Sbjct: 247 REETDQAVKDEWKAKAKARAEALRELAQQPGVDFNEFCREYSEGPGAYRGGDMGLFPQTQ 306

Query: 242 LHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIE 298
           +   + ++         + P  + KG   I +  + + G     A++A L  Q    K++
Sbjct: 307 MIKAYADVAFSLEIGVLSEPVESDKGYYVIKVFGRYEAGDLPFEAVRADLVRQVEGQKLQ 366

Query: 299 KHEAEYVKKLRSNAII 314
                  K+L     +
Sbjct: 367 MGREALRKELEERFTV 382


>gi|299144111|ref|ZP_07037191.1| PPIC-type PPIASE domain protein [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518596|gb|EFI42335.1| PPIC-type PPIASE domain protein [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 253

 Score = 76.3 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/285 (11%), Positives = 70/285 (24%), Gaps = 47/285 (16%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKI----NGELEKIAVQELIVETLKKQEIEKS 93
           M  ++   ++G  IT  D +  +  L  Q      +G+ +K  + ELI + L   +  ++
Sbjct: 1   MEKKVLAIVDGNEITMDDFNFFMESLNPQVRAYFTDGDKKKEIIDELIYQELLYLDAIEN 60

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
            +  D   V       A                                +         +
Sbjct: 61  KLDEDEEFVTVSERTKAS-------------------------------LLKTYALGKLL 89

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                 E EI                +      + D    N         +     L   
Sbjct: 90  ENVSPSEKEIEEFYNANAEHYDVPNSVDASHILVEDENKAN---------ELYNKILAGE 140

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAI 272
                 +  +      + G         +  +F + +    +   + P  T  G   I +
Sbjct: 141 NFEELAKNNSMCPSKNNGGNLGVFHSGQMVREFDEKVFSMKEGEISEPVKTNFGFHIIKL 200

Query: 273 CDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                        ++  +  +    K +K     +++L     I 
Sbjct: 201 NKIIPSKKHTLSEVRDDVIKEVKRYKEQKIYMNKIRELSQKHNIK 245


>gi|229160113|ref|ZP_04288114.1| Foldase protein prsA 1 [Bacillus cereus R309803]
 gi|228623324|gb|EEK80149.1| Foldase protein prsA 1 [Bacillus cereus R309803]
          Length = 287

 Score = 76.3 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/305 (10%), Positives = 88/305 (28%), Gaps = 46/305 (15%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S +I T+  G+ IT  +  +++          +  K 
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKIVTSKAGD-ITKDEFYEQMKT--------QAGKQ 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +++E +  +  +      D                   + F + L +QGI +   K
Sbjct: 52  VLNNMVMEKVLIKNYKVEDKEVDKKYD--------EMKKQYGDQFDTLLKQQGIKEETLK 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +  Q      ++     K      +       +                         
Sbjct: 104 TGVRAQLAQEKAIEKTITDKELKENYKPEIKASHILVKD--------------------- 142

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              +   K  +E   +        ++++         G   +     +  +F++   K  
Sbjct: 143 ---EATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGKMVKEFEDAAYKLK 199

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
           ++  + P  +Q G   I + D ++        K  +  +    K +  +   + + K   
Sbjct: 200 KDEVSEPVKSQFGYHIIKVTDIKEPEKSFDQSKDEIKKEIVQKKAQDGEFMNDLMMKEIK 259

Query: 311 NAIIH 315
            A + 
Sbjct: 260 KADVK 264


>gi|332971078|gb|EGK10048.1| peptidyl-prolyl cis-trans isomerase [Desmospora sp. 8437]
          Length = 337

 Score = 76.3 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/327 (9%), Positives = 100/327 (30%), Gaps = 33/327 (10%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIV---------------SYKSWAMSSRIRTTINGEVITD 53
           ++  +  + + F+ +   +                   +      S ++     G  +T+
Sbjct: 1   MNKRLLTVLSAFLAVSLLVAGCGTKDDKNGQETAKDGQATVLPTDSKKVVAEYEGGKVTE 60

Query: 54  GDISKRIALLKLQKIN-------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF 106
           G+++  + ++ L +          E++K  V+  I E +  + ++           +   
Sbjct: 61  GELNTYLNIMALFQPQMAAMMEAPEVKKEIVKNYIAEQMVAKRVKNGKKYEKQAEESMKQ 120

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
            +       +         +   G      +   Q        N     + +   E    
Sbjct: 121 FEEQLKQMPAEGKDKDKKKQDLEGYLKEHGFTKGQLKDFLEKNNKVSAYFEDRVNEKDLK 180

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKL-----QNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           KQ  K+       +R +L S  ++       ++    + R +  ++      K     +K
Sbjct: 181 KQYNKSDDFYNIKLRHILISTTEDPEGKKKKRSDKDAKARAEKVKKELEGGKKFSEMAKK 240

Query: 222 FASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           ++         G+ +   +  +    +  +K   +  ++P  +  G   I + +++ L  
Sbjct: 241 YSDDPGSKAQGGEMEGTPDQWVPEFSKAAVKTPIDKISDPIKSDYGYHIIQVTERKKLS- 299

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKK 307
                  +  +    K+ +    ++K 
Sbjct: 300 ----FDKVKEEMMGQKVTELYQAFIKD 322


>gi|32474370|ref|NP_867364.1| peptidyl-prolyl cis-trans isomerase [Rhodopirellula baltica SH 1]
 gi|32444908|emb|CAD74910.1| probable peptidyl-prolyl cis-trans isomerase [Rhodopirellula
           baltica SH 1]
          Length = 395

 Score = 76.3 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/272 (10%), Positives = 72/272 (26%), Gaps = 17/272 (6%)

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQ------EIEKSGITFDSNTVNYFFVQ-- 108
              +  +KL+     L +     ++ E    +        ++                  
Sbjct: 96  EDELHYVKLRMTRSLLVQTIQSRMLREAFLLEQVGTAAADKRREAEATMAAKARQMFYET 155

Query: 109 -----HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
                  +    S  +    L K+G      ++    Q +    +++           EI
Sbjct: 156 ELPGLMKKANVDSKAELDDLLRKEGSSLAFRQREFMDQMLGSLYIRSKVNKDPAVSLSEI 215

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
               Q+ ++    +   R    ++  +    +    K I +     L         +  +
Sbjct: 216 VRYYQEHQSKYEHKARARWEQLTVMFSNHPTRDAAMKAITEMGREALYGGNMQAVAKAKS 275

Query: 224 SKIHDVSIGKAQYLLESDLHPQF--QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
            +    S G   +  +  L      Q +        +           I + ++ D G  
Sbjct: 276 EEPFASSGGLHDWTNQGSLVSAILDQQIFSLPTGKMSEIIEDTDAYHIIRVLEREDAGVT 335

Query: 282 I--ALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
               L+  +S      KI   + E + ++R  
Sbjct: 336 PVGELQDDISDILRQQKIRADQEEVMVEVRQR 367


>gi|148652482|ref|YP_001279575.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp.
           PRwf-1]
 gi|148571566|gb|ABQ93625.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp.
           PRwf-1]
          Length = 317

 Score = 76.3 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 78/279 (27%), Gaps = 44/279 (15%)

Query: 44  TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
             +NG VI    I++ +           L  +A Q L+V  L K  +             
Sbjct: 60  VRVNGVVIDKQAIAQELQYHPAPTKEDALF-LATQALVVRELLKNAVLDDD--------- 109

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM-LKYGNLEME 162
                                                +    D+++ +           E
Sbjct: 110 --------------------------TLGQAAWEANEEQAISDLIEKNVTASTPDGDTCE 143

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL----PKDCNK 218
               + K    T     +R +L +      + +  ++K+  +  E          +    
Sbjct: 144 RYYEQNKADYKTAPIMSVRHILLASLPEDGEERLALKKQAYELIEQINNSTNADAEFIEL 203

Query: 219 LEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN-PYVTQKGVEYIAICDKRD 277
             ++++       G+   L +    P+F++++          P  T+ G   + + DK+ 
Sbjct: 204 ARQYSACPSKEQGGELGVLTQGQTVPEFESVVFSMDEGLAPSPVETRYGFHIVQVLDKQP 263

Query: 278 --LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                 +  K  ++ +           +Y+  L   A I
Sbjct: 264 GVQLDYLQAKPAIANKLAQQAFHHGLCDYLYTLAEQAEI 302


>gi|329962622|ref|ZP_08300570.1| PPIC-type PPIASE domain protein [Bacteroides fluxus YIT 12057]
 gi|328529653|gb|EGF56551.1| PPIC-type PPIASE domain protein [Bacteroides fluxus YIT 12057]
          Length = 523

 Score = 76.3 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/304 (7%), Positives = 75/304 (24%), Gaps = 42/304 (13%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN 69
           S  + ++ +   ++             A    +   ING+ +   +              
Sbjct: 3   SKMMTMVKSGLAILFLL----SGLAVIAQPDPVLMRINGKEVFRSEFEYACRQNGKLADG 58

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
              ++  +                             +    N  L   +  +       
Sbjct: 59  VRKQRQDL-----------------------------LDWFVNFKLKVAEAEAAGLDTAE 89

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                      Q +   +   +   +            +        +  +  +  S+P 
Sbjct: 90  VFRSRLDSCRRQLVKSYLTDEETNERVAR-----RFYDKMKSGRRAGQVRVSHIYKSLPQ 144

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
           N         +   D+    L         + +     D       ++    +  +F+ +
Sbjct: 145 NISGYTLRKVEAKMDSIYESLGKGATAAAFDAYVKDFSDDKT--TFWVRWLQMPAEFEEV 202

Query: 250 LKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKHEAEYVKK 307
                    + P+ T +G+  + + +++ +     +K   +  +     ++K     V+K
Sbjct: 203 AFDLQPGEISRPFFTPQGIHIVKVLERKAVPPFDEVKEEMIRCRTRRHGMDKGTEALVEK 262

Query: 308 LRSN 311
           L+  
Sbjct: 263 LKQE 266


>gi|301054383|ref|YP_003792594.1| peptidylprolyl isomerase [Bacillus anthracis CI]
 gi|300376552|gb|ADK05456.1| peptidylprolyl isomerase [Bacillus cereus biovar anthracis str. CI]
          Length = 280

 Score = 76.3 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/305 (11%), Positives = 83/305 (27%), Gaps = 44/305 (14%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +     V+    +   +S  +   S  I TT +G  I++ D +K++             K
Sbjct: 1   MKRKKIVIGSILMGMTLSLSACGSSDNIVTTKSGS-ISESDFNKKLK--------ENYGK 51

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             + E++VE +   + + +                        E  +   +         
Sbjct: 52  QNLSEMVVEKVLNDKYKATDEEVT---------------KQIKELKTKMGNNFNTYMESN 96

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                 Q      +   F         E          +     L++             
Sbjct: 97  GVKNEDQLKEKLKLTFAFEKAIKATVTEKEIKDHYKPKLQASHILVK------------- 143

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK- 252
               +K  K+ +E            ++++         G         +  +F++   K 
Sbjct: 144 ---DEKTAKEIKEKLNNGEDFAALAKQYSEDPGSKEKGGDLSEFGPGMMVKEFEDAAYKL 200

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
                + P  +  G   I +  K++L      K  +  +    +I+  +   +  + +  
Sbjct: 201 EVGQVSEPIQSSFGYHIIKLTGKKELKPYEEEKVNIRKELEQQRIQDPQFHQQVTRDILK 260

Query: 311 NAIIH 315
           NA I 
Sbjct: 261 NADIK 265


>gi|89891028|ref|ZP_01202536.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteria
           bacterium BBFL7]
 gi|89516672|gb|EAS19331.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteria
           bacterium BBFL7]
          Length = 453

 Score = 76.3 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/284 (8%), Positives = 76/284 (26%), Gaps = 15/284 (5%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGEL-EKIAVQELIVETLKKQEIEKSGITFD 98
             +   +   VI + DI K+I  ++  +  GEL +   ++ ++ E +      +  IT  
Sbjct: 33  DGVSGVVGDYVILNSDIKKQILEIQGDQDLGELSDCQLIESILREKMFAHHAVQDSITVS 92

Query: 99  SNT----VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
                   +          G        +              +         ++     
Sbjct: 93  DQEVEAETDQRIAYFKGILGSDEAVLKKYQKSSMPELRSALNRITRDMKLAQRMQQRITE 152

Query: 155 KYGNLEMEIPANKQKMKNI----TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
           +      E+      +          E  +  ++     ++   +  V K  +   +   
Sbjct: 153 EVEITPEEVREFFYDLPEDERPLFNTEVEMAQIVVKPKPSEDAIKDVVDKLNEYRTDVLE 212

Query: 211 RLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVE 268
                  K   F+     +   G            +F+      ++   + P+ T  G  
Sbjct: 213 NGASFAAKAALFSEDVATERQGGIISLKRGDPFVKEFKEAAFSLTEGEVSEPFETVFGWH 272

Query: 269 YIAICDKRDLGGEIALKAYLSAQNTPTKIE-KHEAEYVKKLRSN 311
            + +   +    ++    ++      +  +     + + ++R  
Sbjct: 273 ILKVEKVKGQVRDV---RHILLYPYISVAQVNDAKQKLDEMRDR 313


>gi|30250138|ref|NP_842208.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           europaea ATCC 19718]
 gi|30139245|emb|CAD86118.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           europaea ATCC 19718]
          Length = 630

 Score = 76.3 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/257 (10%), Positives = 75/257 (29%), Gaps = 10/257 (3%)

Query: 61  ALLKLQKINGELEKIAVQ----ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
           A+ + +     + +  ++     +IV      ++     T           +   +    
Sbjct: 145 AMFEARVAGELMRQQLLEGITGSVIVPRTVAGKVASLSATMYEINRMTISPEQYIDQAEP 204

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            E            D    + + ++ +   + +     +  + E+    ++ + +     
Sbjct: 205 DEAAIQSYYDSHYQDFTLPERVKVEYVVLSLDELARQEQISDEEIRKYYDEHQDEFGQAE 264

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDA--EESRLRLPKDCNKLEKFASKI-HDVSIGK 233
           E     +L S+P +  + Q    K   +   E+ R    K      + +         G 
Sbjct: 265 ERRASHILLSVPADATEEQKTSTKARAEQILEQVRQDPEKLPELAAELSEDPGSAKEGGD 324

Query: 234 AQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSA 290
             +     +   F++   +  +     P  T  G   I + + +  D+ G   +K  +  
Sbjct: 325 LGFFARGLMVKPFEDEVFQMQRGEIRGPVETPFGFHIIRLTEVKGADVAGLDDVKEQIRQ 384

Query: 291 QNTPTKIEKHEAEYVKK 307
                K+     E  + 
Sbjct: 385 LLQHQKVADRFGELSED 401


>gi|116048605|ref|YP_792596.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115583826|gb|ABJ09841.1| probable peptidyl-prolyl cis-trans isomerase, PpiC [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 314

 Score = 76.3 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 68/245 (27%), Gaps = 6/245 (2%)

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           ++A  EL     +     ++ ++ + + +  +         L  +  +    ++      
Sbjct: 55  QVAPDELKALLAEVPAETRAQLSENRDALERWMRARLAEKALYEQASAQDWQQRPQVKTL 114

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                    +   +     + +    + E+ A  Q  K       L R     I  +   
Sbjct: 115 IDAAARQIVLRTYLESVSTVPEDYPSDAELQAAYQANKAQLAVPALYRVSQIFIAASAAG 174

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESD--LHPQFQNLL 250
                +KR ++                K +       + G    LL     L      L 
Sbjct: 175 GLAEARKRAQELYRQAADG-DFAELARKHSDDPQTARNGGDIGGLLAQAQLLPAIRPALE 233

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
           +      + P     G   + + ++RD        ++  L       + E+    Y+  L
Sbjct: 234 RLKVGAVSEPIQGANGFHLVKLTERRDARLATLDEVRGRLRESLRAQRQEQIAKAYLDGL 293

Query: 309 RSNAI 313
            +NA 
Sbjct: 294 VNNAT 298


>gi|188534628|ref|YP_001908425.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Erwinia
           tasmaniensis Et1/99]
 gi|188029670|emb|CAO97549.1| Peptidyl-prolyl cis-trans isomerase D [Erwinia tasmaniensis Et1/99]
          Length = 622

 Score = 76.3 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/373 (7%), Positives = 89/373 (23%), Gaps = 85/373 (22%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN-------------- 69
            F +  +  Y +          +NG+ I+   + +  +  + ++                
Sbjct: 23  SFVLTGVGGYLTGGSGDY-AAKVNGQEISRAQLERAFSSERARQQQMLGEQFSVLASNEG 81

Query: 70  --GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT---GLSAEDFSSFL 124
              ++ +  + +LI E L  Q  +  G+T   + +                    + S +
Sbjct: 82  YMQQMRQQTLSQLIDEVLLTQYAKDIGLTIGDDQIKQAIFTQPAFQTAGQFDNAKYLSII 141

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVV----------------------KNDFMLKYGNLEME 162
           +  G   + + + L  Q     ++                      +   + +       
Sbjct: 142 NNIGFSADQYAEALRKQLTTQQLINAVTKTDFVLGNEADSLAALVSQQRLVREVTIDVNA 201

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA----------------- 205
           + A +   +      Y          +    +   +     +                  
Sbjct: 202 LAAKQDVTQEEISNYYQQHQSSLMSSEQFRVSYIKMDAAAMEQAVSESDIQSWYEKHQDD 261

Query: 206 -----------------------EESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESD 241
                                   +S  +        ++ +       + G   +L    
Sbjct: 262 YTQPQRNRYSIIQTNTEAEARSVLDSLKKGDDFAKLAKEKSVDPISARNGGDMGWLEPQT 321

Query: 242 LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEK 299
              + +    K +   +    +  G     + + +    +    +   ++A+    K   
Sbjct: 322 TPDELKGASLKEKGQLSGVITSSPGFIIARLDETQPEKVKPLSEVHDDIAAKLKQEKAVA 381

Query: 300 HEAEYVKKLRSNA 312
              +  +K+   A
Sbjct: 382 AFYKLQQKVSDAA 394


>gi|253999544|ref|YP_003051607.1| EpsD family peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
           SIP3-4]
 gi|253986223|gb|ACT51080.1| peptidyl-prolyl cis-trans isomerase, EpsD family [Methylovorus sp.
           SIP3-4]
          Length = 305

 Score = 76.3 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/306 (8%), Positives = 74/306 (24%), Gaps = 50/306 (16%)

Query: 18  TYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK--LQKINGELEKI 75
               L+   +       +   S ++   ++G+ I+   +++ I  +    +     + K 
Sbjct: 7   LALGLLSVTLFGCGKSDNKPESGQVAAKVDGKEISLLQLNQVIKNVPNVSEDNVDAIRKQ 66

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  LI + L   +            V+                                
Sbjct: 67  ILDRLIDQQLILNKAYDEKFERTPEVVSAI------------------------------ 96

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +     +I    V      K      E+    +    +  +  +      +I        
Sbjct: 97  ETAKRDAITRAYVSKLVATKVKPGNQEVKTYFETHPELFTQRRVYNLQDIAIAPGANLPG 156

Query: 196 GFVQK----RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
               +    +        L+          ++                  +      +LK
Sbjct: 157 DLAAQVEKSKGMQDVAEWLKAGGVKFGASSYSK-------------PAEQIATDALAVLK 203

Query: 252 KSQNNTTNPYVTQKGVEYIAICDKRDLG-GEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
             +     P      V  + +             K  + +  T T+ ++   + + +++ 
Sbjct: 204 NLKGGEIVPLTMDGNVHVVKLIGAVPAPMDFNQAKPLILSYLTNTQGQQLIKQELARMKE 263

Query: 311 NAIIHY 316
           NA I Y
Sbjct: 264 NAKIEY 269


>gi|224824986|ref|ZP_03698092.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
           2002]
 gi|224602657|gb|EEG08834.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
           2002]
          Length = 340

 Score = 76.3 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 13/110 (11%), Positives = 33/110 (30%), Gaps = 3/110 (2%)

Query: 206 EESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVT 263
           +E R    K     +  +       + G   +     +   F+++  +      +    T
Sbjct: 10  KEVRANPAKFAELAKTRSQDPGSAANGGDLGFFGRGAMVKPFEDVAFRMQPGQISELVET 69

Query: 264 QKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           + G   + + + +      A+K  +  +    K         +KL   A 
Sbjct: 70  EFGFHILKLDEVKQ-PVFAAVKGEVEQRLKRQKAAAQFRAASEKLGELAY 118


>gi|47565690|ref|ZP_00236730.1| peptidyl-prolyl cis-trans isomerase [Bacillus cereus G9241]
 gi|47557326|gb|EAL15654.1| peptidyl-prolyl cis-trans isomerase [Bacillus cereus G9241]
          Length = 283

 Score = 76.3 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/309 (11%), Positives = 88/309 (28%), Gaps = 50/309 (16%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKINGELE 73
           +      L       +++  +   S  + T  +    +T+ ++SK    L+ +     L 
Sbjct: 1   MKKKKLFLGTIISCVVLALSACGSSDNVVTSKVGN--VTEKELSKE---LRQKYGESTLY 55

Query: 74  KIAVQE-LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           ++ + + L+ +     E  K  +    + +   F       GL  ED             
Sbjct: 56  QMVLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKATLEQLGLKNED------------- 102

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             K+ +  +  +   +K     K      +       +                      
Sbjct: 103 ELKEKMKPEIAFEKAIKATVTEKDVKDNYKPEMKVSHILVKD------------------ 144

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK 251
                 +K  K+ +E            ++++         G+           +F+    
Sbjct: 145 ------EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAY 198

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY----VK 306
           K      + P  T  G   I + DK++L     +K  +       +++    ++    V 
Sbjct: 199 KLDAGKVSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVN 258

Query: 307 KLRSNAIIH 315
            L  +A I 
Sbjct: 259 GLLKDADIK 267


>gi|293606739|ref|ZP_06689092.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
           43553]
 gi|292814889|gb|EFF74017.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
           43553]
          Length = 352

 Score = 76.3 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/258 (11%), Positives = 59/258 (22%), Gaps = 24/258 (9%)

Query: 59  RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
           R+   +L      L   A Q+L                  +       ++ AR  G   +
Sbjct: 77  RVERDELLGQLQTLPPQARQQLQDNRA------GMEQWLRARLAEKALIEQARAQGWQDQ 130

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
                            Q    + +    +++      G           +     +   
Sbjct: 131 ----------PEIRRAVQAAEERIVVQSYLESVSRAPDGYPTDADLQAAYERAKPQLAVP 180

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV-----SIGK 233
               V        L +   V    K A E   R           A             G 
Sbjct: 181 AQYHVSQIFLPAPLGDADAVAATRKQALELTKRAQAPKADFAALAQAHSRDETSRAQGGD 240

Query: 234 AQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSA 290
             ++  + L P+ +  + +      + P  +  G   + +   R         +   L  
Sbjct: 241 IGFVPLAQLTPEMRPVIEQMKAGEVSAPVQSAAGFHILKLTALRPASVTPFEQVSPQLRT 300

Query: 291 QNTPTKIEKHEAEYVKKL 308
                + E     Y++ L
Sbjct: 301 ALRSQRQELAARAYMEGL 318


>gi|310639515|ref|YP_003944273.1| ppic-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           polymyxa SC2]
 gi|309244465|gb|ADO54032.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           polymyxa SC2]
          Length = 372

 Score = 76.3 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/312 (10%), Positives = 87/312 (27%), Gaps = 20/312 (6%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRI----------RTTINGEVITDGDISKRIALLK 64
            + +  +  +  I  + +    A  +++            T  G  IT+ + ++ I+++K
Sbjct: 11  RMLSLGMAALLAISVLAACTKQADENKVKDEPKDNSKVVVTYKGGTITENEFNQEISMMK 70

Query: 65  LQKINGELE---KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
                 E         ++++ + +  + +                 +       S  +  
Sbjct: 71  FLYPEYEAALASDQVREQIVKQEVVYKLLAAKADDKAKEEGAKQGNEQLEQYKKSVGEDK 130

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
                        +Q +         V N    K  + +++    K K +  T     + 
Sbjct: 131 F--KTFLSDQKLTEQGVKDYFTRVMTVINSETNKVTDDQLKQEFEKNKDQFTTATVRHVL 188

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLES 240
                    K + +    K  K+ +             +K++       + G  +    +
Sbjct: 189 INFEDPKTKKQRTKEATLKLAKEVKAKLDGGADFATIAKKYSEDPGSASNGGLYENASVA 248

Query: 241 DLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY---LSAQNTPTK 296
              P F+   +    N    P  T+ G   I +  + +   +         L  +     
Sbjct: 249 QWVPAFKEAAETQPINKIGEPVETEYGYHVIKVESRNEPTFDKLKDNEKAALKNKLAGES 308

Query: 297 IEKHEAEYVKKL 308
           I+      + KL
Sbjct: 309 IQNFTENDLTKL 320


>gi|237746606|ref|ZP_04577086.1| peptidyl-prolyl cis-trans isomerase [Oxalobacter formigenes HOxBLS]
 gi|229377957|gb|EEO28048.1| peptidyl-prolyl cis-trans isomerase [Oxalobacter formigenes HOxBLS]
          Length = 647

 Score = 76.3 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 47/161 (29%), Gaps = 8/161 (4%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                   + ++ +  ++ ++        R     I   K  +     +  K AEE   +
Sbjct: 243 VEKNVKISDADLQSYYEQNRDRFSIPEERRAQHILIAVAKNASDSEKAEAKKKAEELLAQ 302

Query: 212 LPK----DCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQK 265
           L           +  +       + G   +     +   F + +    +   ++P  T  
Sbjct: 303 LKADPSRFAELAKAHSQDPGSARNGGDLGFFTRGKMVKPFNDAVFGMKKGEISDPVQTDF 362

Query: 266 GVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEY 304
           G   IA+ D +         +K  +  +    +  K  AE 
Sbjct: 363 GYHLIAVTDIKPAVAKPLSQVKDSVLQELKRQETSKKFAEM 403



 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/166 (10%), Positives = 42/166 (25%), Gaps = 18/166 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + +      +++   F++  F  V +  YK +         +NG+ IT  +     
Sbjct: 1   MLDFIRSH-KRLTQIILLVFIIPSFIFVGVEGYKRFGDGDA-VAKVNGKAITQQEWDNAQ 58

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
                +                    + +   +Q LI   +    + K  +T     V  
Sbjct: 59  REQAERFRQRAAVQGQPFDSKWIESSQFKWAVLQNLINRRVLLATLNKEHLTVPEQVVLQ 118

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
              +     G   +   +   +                     ++ 
Sbjct: 119 KIREIPGLIGPDGKLNEARYKEVLAAQGLNPDMHFALMTQDMAMQQ 164



 Score = 37.0 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 24/248 (9%), Positives = 59/248 (23%), Gaps = 6/248 (2%)

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
                ++ E  +++  +K     ++ +   +    +      A   +         D   
Sbjct: 382 QVKDSVLQELKRQETSKKFAEMSETFSNMVYEKPDSLKPVADALKLTVHTFPNLARDPAV 441

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                     P +++  F       +    A +   + +              P  K+++
Sbjct: 442 AARQNPLLADPKILQAIFSDDAVKGKHNTEAVEVSPQVLVAARIAKHYPAELTPFEKVKS 501

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH-----PQFQNL 249
               Q   + A        +      K        S G      +  +            
Sbjct: 502 VVKAQVTNEKAMALAKAAGEAELARLKEGGAPSGFSPGLLVSRQKITMAGRSDLAPVMKA 561

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDK-RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
                       +   G     I         +  L+  +S Q T    ++  A Y+  L
Sbjct: 562 DVSKLPAYVGVEMAPNGYIIYRITRVVTPEKTDGKLREAMSRQMTNVMAQQDLAAYMNYL 621

Query: 309 RSNAIIHY 316
           +  A +  
Sbjct: 622 KQEAKVEI 629


>gi|288818385|ref|YP_003432733.1| hypothetical protein HTH_1074 [Hydrogenobacter thermophilus TK-6]
 gi|288787785|dbj|BAI69532.1| hypothetical protein HTH_1074 [Hydrogenobacter thermophilus TK-6]
 gi|308751978|gb|ADO45461.1| conserved hypothetical protein [Hydrogenobacter thermophilus TK-6]
          Length = 276

 Score = 75.9 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/311 (10%), Positives = 87/311 (27%), Gaps = 49/311 (15%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIAL-------LKLQKIN 69
              FVLI   +V             +   +N   IT  ++             L + +  
Sbjct: 1   MALFVLITLLMVGFSYAN-------VVAKVNQRSITREEVISAFNAYWRGIIHLPIAQAT 53

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
               +  + E +   + +QE +K GI    +    +  ++                    
Sbjct: 54  KRDMQEFLVEYVRSLIIQQEAKKMGINVKESEFKEYITKNI---------------GNVP 98

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                ++ +  + +   ++           + EI A                        
Sbjct: 99  LSETVRELVKTEILTNKILD-RIAKDIDVSDREITAYYYLNLRDFK-------------- 143

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
             L  Q  V++ + +  ++   +    +K  +    +  V  G   +     L    +  
Sbjct: 144 --LPAQVLVRRVLVEDLDTANEVYYRLSKGAESLEGLRGVKEGDPMWYSIQTLPEIVKQQ 201

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
                   T+ P  T  G   + + D+R   +      K  +  +    K ++   ++ +
Sbjct: 202 LYPYEVGKTSKPIDTGSGYLILKVIDRRGDGILSLEEAKPVVKEKLLKEKRQEVFKKWFQ 261

Query: 307 KLRSNAIIHYY 317
           K+     + ++
Sbjct: 262 KVSKEYRVEFF 272


>gi|153951254|ref|YP_001398165.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938700|gb|ABS43441.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 273

 Score = 75.9 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 92/299 (30%), Gaps = 35/299 (11%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
                  +++  +  +++    T+NG+ I+D ++S+  A +   +    L     + LI 
Sbjct: 4   FSLVAAALIAGVALNVNAATVATVNGKSISDTEVSEFFASMLRGQDFKTLPDNQKKALIQ 63

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           + + +  I +     +                                    +   A  +
Sbjct: 64  QYIMQDLILQDAKKQNLEKD---------------------------PLYTKELDRAKDA 96

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           I  +V +   +        ++ A   + K+  V+   ++     +   K       + + 
Sbjct: 97  ILVNVYQEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKG 156

Query: 203 KDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNN--TTN 259
              +E   +        ++ +         G+  +  +S +   F +     +N   TT 
Sbjct: 157 LKGKELDAKFS---ELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTT 213

Query: 260 PYVTQKGVEYIAICD--KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           P  T  G   I   +   +       +K  +       + +K   +  + L ++A + Y
Sbjct: 214 PVKTNFGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDLLNSAKVEY 272


>gi|228957422|ref|ZP_04119177.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228802255|gb|EEM49117.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 287

 Score = 75.9 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/305 (11%), Positives = 89/305 (29%), Gaps = 46/305 (15%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S +I T+  G+ IT  +   ++          +  K 
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKIVTSKAGD-ITKEEFYNQMKT--------QAGKQ 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +++E +  +  +      D                   + F + L +QG+ +  FK
Sbjct: 52  VLNNMVMEKVLIKNYKVDDKEVDKKFDETK--------KQVGDQFDTLLKQQGLKEETFK 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             L  Q      ++     K      +       +                         
Sbjct: 104 NMLRAQLAQEKAIEKTITDKELKDNYKPEIKASHILVKD--------------------- 142

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              +   K  +E   +        ++++         G   +     +  +F++   K  
Sbjct: 143 ---EATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGKMVKEFEDAAYKLK 199

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRS 310
           ++  + P  +Q G   I + D ++        KA +  +    K++      + + K   
Sbjct: 200 KDEVSEPVKSQFGYHIIKVTDIKEPEKSFEQSKADIKKELVAKKVQDGAFMNDLMMKEIK 259

Query: 311 NAIIH 315
            A + 
Sbjct: 260 KADVK 264


>gi|257459731|ref|ZP_05624840.1| foldase protein PrsA 2 [Campylobacter gracilis RM3268]
 gi|257443156|gb|EEV18290.1| foldase protein PrsA 2 [Campylobacter gracilis RM3268]
          Length = 274

 Score = 75.9 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 84/303 (27%), Gaps = 44/303 (14%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGD-----ISKRIALLKLQKINGELEKIAVQ 78
           I     + +    ++++ +  T     IT  D        +      Q+   + +K  + 
Sbjct: 4   ILSFSFVAAMAISSLNAGVLATAKDANITITDEDVAPFLAQGMQHGGQEPTADEKKKLID 63

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
           +LI   L   E +KSGI       +                                  L
Sbjct: 64  DLIKYKLLIAEAKKSGIENSDEYKHQL-------------------------------EL 92

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
           A   I  ++ + +        + E      + K   ++   +      + D K       
Sbjct: 93  AKDGIAFNLWQREQAKDVSVSDEEAKKIYDENKQNFMQPDSVTASHILVADEKAAKNAIA 152

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDV-SIGKAQYLLESDLHPQFQNLLKK-SQNN 256
           +      E  +    K     ++ +       + G      +  + P+F+          
Sbjct: 153 KLSKVKKENLKEEFNK---LAKEISIDPSAKENGGDLGSFGKGMMVPEFEKAAFALKDGE 209

Query: 257 TTN-PYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            +  P  TQ G   I     +  +      +K  +  Q  P+K+ K   +   +L     
Sbjct: 210 MSKTPVKTQFGYHVIYKESSKKAETMPFEKVKDLIKNQLLPSKVNKKIDDKANELFGKLN 269

Query: 314 IHY 316
           I Y
Sbjct: 270 IEY 272


>gi|319790371|ref|YP_004152004.1| SurA domain protein [Thermovibrio ammonificans HB-1]
 gi|317114873|gb|ADU97363.1| SurA domain protein [Thermovibrio ammonificans HB-1]
          Length = 436

 Score = 75.9 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 50/327 (15%), Positives = 101/327 (30%), Gaps = 30/327 (9%)

Query: 1   MTSKVFTSLSDF---IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDIS 57
           M SK+  +L  F   + ++   FV  IF +    S+   + S     T+NG+ IT  + +
Sbjct: 1   MLSKIRKNLRAFSIPLWIVAASFVGTIFLVWGRGSFSGPSGSQ--VATVNGQPITLAEFN 58

Query: 58  KRIA------------LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           +                        ++++IA+Q L+   L  +  ++ G+      V   
Sbjct: 59  REYKTVEDELRRKLGDNFNKLVKPNDIKRIALQRLVQRALLIELAKEEGLKVSDWAVAKA 118

Query: 106 FVQH---ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
             +      N   S + + +FL  QG+    F++ +    +   V+           + E
Sbjct: 119 IEEMPIFQENGKFSVKLYKAFLRAQGLTPQAFEETVRKDLLVQKVL-TVVNHAPSVTQAE 177

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +    +K        Y + T     P    +      K+ K+               E  
Sbjct: 178 LTELYKKSFGQRKIGYKVFTADQFNPKVSEEEVEQFYKKHKEQFTKEAGEEVYLLSFENT 237

Query: 223 ASK-------IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIA-ICD 274
                           G+ + L   +        L K        + ++ G   +A    
Sbjct: 238 PQGKERAKEAYELAKKGELEKLKAFN-PKPAPEKLAKELQKRPFIFRSENGRLILAFKLK 296

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHE 301
           K +      +KA +  Q    K  +  
Sbjct: 297 KSETVPLEKVKAQIEEQLKEEKALELA 323


>gi|296390946|ref|ZP_06880421.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Pseudomonas aeruginosa PAb1]
          Length = 314

 Score = 75.9 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 68/245 (27%), Gaps = 6/245 (2%)

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           ++A  EL     +     ++ ++ + + +  +         L  +  +    ++      
Sbjct: 55  QVAPDELKALLAEVPAETRAQLSENRDAMERWMRARLAEKALYEQASAQDWQQRPQVKTL 114

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                    +   +     + +    + E+ A  Q  K       L R     I  +   
Sbjct: 115 IDAAARQIVLRTYLESVSTVPEDYPSDAELQAAYQANKAQLAVPALYRVSQIFIAASAAG 174

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESD--LHPQFQNLL 250
                +KR ++                K +       + G    LL     L      L 
Sbjct: 175 GLAEARKRAQELFRQAADG-DFAELARKHSDDPQTARNGGDIGGLLAQAQLLPAIRPALE 233

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
           +      + P     G   + + ++RD        ++  L       + E+    Y+  L
Sbjct: 234 RLKVGAVSEPIQGANGFHLVKLTERRDARLATLDEVRGRLRESLRAQRQEQIAKAYLDGL 293

Query: 309 RSNAI 313
            +NA 
Sbjct: 294 VNNAT 298


>gi|42780220|ref|NP_977467.1| peptidylprolyl isomerase [Bacillus cereus ATCC 10987]
 gi|42736139|gb|AAS40075.1| protein export protein prsA [Bacillus cereus ATCC 10987]
          Length = 287

 Score = 75.9 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/305 (10%), Positives = 87/305 (28%), Gaps = 46/305 (15%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S +I T+  G+ IT  +    +          +    
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKIVTSKAGD-ITKEEFYNEMK--------QKGGSQ 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +Q +++E +  +  +      D                   + F + L +QG+ +   K
Sbjct: 52  VLQSMVMEKVLIKNYKVDEKEVDKKYD--------EMKKQVGDQFDTLLKQQGLKEETLK 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +  +      ++     K      +       +                         
Sbjct: 104 NGVRAELAQDKAIEKTITDKELKENYKPEIKASHILVKD--------------------- 142

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              +   K  +E   +        ++++         G   +     +  +F++   K  
Sbjct: 143 ---EATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGKMVKEFEDAAYKLK 199

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
           ++  + P  +Q G   I + D ++        KA +  +    K +  +   + + K   
Sbjct: 200 KDEVSEPVKSQFGYHIIKVTDIKEPEKSFEQSKADIKKELVAKKKQDTQFMNDLMTKEIK 259

Query: 311 NAIIH 315
            A + 
Sbjct: 260 KADVK 264


>gi|218893343|ref|YP_002442212.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Pseudomonas aeruginosa LESB58]
 gi|218773571|emb|CAW29385.1| probable peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Pseudomonas aeruginosa LESB58]
          Length = 314

 Score = 75.9 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 68/245 (27%), Gaps = 6/245 (2%)

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           ++A  EL     +     ++ ++ + + +  +         L  +  +    ++      
Sbjct: 55  QVAPDELKALLAEVPAETRAQLSENRDALERWMRARLAEKALYEQASAQDWQQRPQVKTL 114

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                    +   +     + +    + E+ A  Q  K       L R     I  +   
Sbjct: 115 IDAAARQIVLRTYLESVSTVPEDYPSDAELQAAYQANKAQLAVPALYRVSQIFIAASAAG 174

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESD--LHPQFQNLL 250
                +KR ++                K +       + G    LL     L      L 
Sbjct: 175 GLAEARKRAQELYRQAADG-DFAELARKHSDDPQTARNGGDIGGLLAQVQLLPAIRPALE 233

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
           +      + P     G   + + ++RD        ++  L       + E+    Y+  L
Sbjct: 234 RLKVGAVSEPIQGANGFHLVKLTERRDARLATLDEVRGRLRESLRAQRQEQIAKAYLDGL 293

Query: 309 RSNAI 313
            +NA 
Sbjct: 294 VNNAT 298


>gi|88658238|ref|YP_507033.1| SurA domain-containing protein [Ehrlichia chaffeensis str.
           Arkansas]
 gi|88599695|gb|ABD45164.1| surA domain protein [Ehrlichia chaffeensis str. Arkansas]
          Length = 395

 Score = 75.9 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 109/297 (36%), Gaps = 12/297 (4%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI--NGELEKIAVQELI 81
           +  +  I+   +   S +I   +N E+I++ D+ KRIA+ K          E+IA+  LI
Sbjct: 8   LLVLFIILYSSNVFASVKIVAMVNDELISNLDLEKRIAINKFFYKVEGNTAEEIALNALI 67

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
            E++ +QE  K  +T     +     Q      L   D  S+++ QG+    F Q++  +
Sbjct: 68  DESIWRQEARKLKVTVTERDLLEAIKQFLVIKNLGNIDLKSYVEAQGLDYKLFVQHMKSK 127

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
            +W  ++           + E+  ++  M    +   +   +   +    + +   +   
Sbjct: 128 LLWNKILMLKIAPYIIISDKEVQDSRDNMVGNGLD--ISVHIQEVMLPASMNDNESIISS 185

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPY 261
           I    +S + +       +    +   V++      L + L       L     +   P 
Sbjct: 186 IISELQSGVSVETIKANRKDVLFEEASVNVKNIDANLANKL-------LNAKIGDVIGPM 238

Query: 262 VTQKGVEYIAICDKRDLGGEIALKA-YLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            ++ G   I +  + D+  E A     L   +   +  K   + +  L++ A    +
Sbjct: 239 KSEYGTLIIKLIHRSDINKEFANSNVDLRQMHLNIEQGKEYLDQISILKTKATCENF 295


>gi|261403916|ref|YP_003240157.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           Y412MC10]
 gi|261280379|gb|ACX62350.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           Y412MC10]
          Length = 361

 Score = 75.9 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/315 (9%), Positives = 86/315 (27%), Gaps = 8/315 (2%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIV-SYKSWAMSSRIRTTINGEVITDGDISKR 59
           M S+   +   FI  +T    + +        +  +   +S++     G  IT+ +    
Sbjct: 1   MPSRNNKAWKTFIVSITAVLSMSMIAACGNDKTKGAEEDNSKVIVKYKGGEITEKEFDLE 60

Query: 60  IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
             +++            + E      K+    +       +       +   +     + 
Sbjct: 61  QRMIQFMSPEYAQFLQ-MDEFKEYLAKQGVAYEYLYAKADDKAKEAAEKQTDDLLKQQKA 119

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
                  +   ++       +++    V+      K    E +I       K       +
Sbjct: 120 GMGEEQFKAALESQKLTEDDLKNYMLRVMTVMEHEKNQVTEEDIKKEFDANKKDYTNISV 179

Query: 180 IRTVLFSIPDNKLQNQG-FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
              ++        +       K  K+ +    +        ++++      + G      
Sbjct: 180 RHVLIAFQDAEGKERPEGEALKIAKEVQSKLNKGEDFAALAKEYSQDPGSKNSGGLYENK 239

Query: 239 E--SDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEI---ALKAYLSAQNT 293
              S +    +  L    N  ++P  T  G   + +  + ++  +      K  + ++  
Sbjct: 240 PAGSWVPQFKEKALTLELNKISDPVETDYGYHVMKVEKREEVTYDKLPADQKEGIRSELA 299

Query: 294 PTKIEKHEAEYVKKL 308
             KI+      +  L
Sbjct: 300 SAKIDNFMQNELNNL 314


>gi|40062782|gb|AAR37676.1| peptidyl-prolyl cis-trans isomerase, putative [uncultured marine
           bacterium 439]
          Length = 613

 Score = 75.9 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/390 (8%), Positives = 91/390 (23%), Gaps = 83/390 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +      ++  L    + + F +  I  Y     S+    +++GE I+     +++
Sbjct: 1   MLGAIRKKSKGWVAYLIVGLITVPFALFGIQEYMG-GSSNSAVASVDGEDISLDYYYQKL 59

Query: 61  ALLKLQKING-----------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
              +                  L +  +  LI E L +       +      V  F   +
Sbjct: 60  NTQQRNLQQQLGASYSAEIDNALRQTLIDSLINEKLLENFTNSMKLVTLEEEVRSFIQSN 119

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK-------------------- 149
                        ++    +       Y   QS    + +                    
Sbjct: 120 PVFQVDGVFSEERYIQLLRLNGFTPLAYELEQSKSMSLDQIKRNLNNSAFLSTVQIDQLN 179

Query: 150 ----------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRT-----VLFSIP 188
                             +  +    + +I       K+  +  + ++       L +I 
Sbjct: 180 DLSAQERDVSFLVLSTEKYKEQIIVDQDQISEYFDNNKSNFIEGHKVQVDFVELSLDNIE 239

Query: 189 DNKLQNQGFVQKRIKDAEES--------------------------RLRLPKDCNKLEKF 222
                +   ++K   + EE                                         
Sbjct: 240 QQTNPDNETLRKLYVENEELYTNSEQRRAQHILLEEESNARAILKEIKEGGDFSELARIH 299

Query: 223 ASK-IHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG- 279
           +         G         + P+F + +      + +    T  G   I + + +    
Sbjct: 300 SKDITTSEEGGDLGLFERELMVPEFDKAVFDMDVGDISEVVKTDYGYHIIKLNEIQPSTL 359

Query: 280 -GEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
                ++  L   +     ++   E  ++L
Sbjct: 360 QSFEEVEGQLLVLHKKNVNQEALYELQEEL 389


>gi|149176439|ref|ZP_01855053.1| probable peptidyl-prolyl cis-trans isomerase [Planctomyces maris
           DSM 8797]
 gi|148844791|gb|EDL59140.1| probable peptidyl-prolyl cis-trans isomerase [Planctomyces maris
           DSM 8797]
          Length = 369

 Score = 75.9 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/294 (9%), Positives = 87/294 (29%), Gaps = 32/294 (10%)

Query: 31  VSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEI 90
           +S    +  ++    +   VI++ ++++    L             ++ +I   + +Q  
Sbjct: 60  ISGNQPSARTQPVAKVGSVVISEDELARECIAL--------YGPEVLENVINRAIIEQAC 111

Query: 91  EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
           +K+G+  +   V+    + A+      +  + +   Q     +  QY          ++ 
Sbjct: 112 QKAGVNVEQAEVHAEVEKIAKRFN--LDTKTWYEMLQAERKMNPNQYRRNVIWPMLALRK 169

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
               +    + ++                 R ++        +    V+K          
Sbjct: 170 LAGQRTKLSQDQVQKAF---VRDYGPRVKARMIMMDNLSRAQKVWDEVKKNP-------- 218

Query: 211 RLPKDCNKLEKFASKIHDVSIG----KAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKG 266
                      ++ + +  ++G          E++    ++   K  +   +        
Sbjct: 219 --GDFERFARDYSIEPNSRALGGAIQPIPQFSENE--SLWKAAFKLKEGEVSGIVQIGLS 274

Query: 267 VEYIAICDKRDLG---GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
              I +C+ R          ++  L  Q T  + ++  A    KL+    +  Y
Sbjct: 275 RYAILLCEGRTEPIVNSIKEVENQLVDQLTEEQTQEAVARVFAKLKEQTRVDNY 328


>gi|283956008|ref|ZP_06373497.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792484|gb|EFC31264.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 273

 Score = 75.9 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 93/299 (31%), Gaps = 35/299 (11%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
                  +++  +  +++    T+NG+ I+D ++S+  A +   +    L     + LI 
Sbjct: 4   FSLVAAALIAGVALNVNAATVATVNGKSISDTEVSEFFAPMLRGQDFKTLPDNQKKALIQ 63

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           + + +  I +     +                                    +   A  +
Sbjct: 64  QYIMQDLILQDAKKQNLEKD---------------------------PLYTKELDRAKDA 96

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           I  +V ++  +        ++ A   + K+  V+   ++     +   K       + + 
Sbjct: 97  ILVNVYQDKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKG 156

Query: 203 KDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNN--TTN 259
              +E   +        ++ +         G+  +  +S +   F +     +N   TT 
Sbjct: 157 LKGKELDAKFS---ELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTT 213

Query: 260 PYVTQKGVEYIAICD--KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           P  T  G   I   +   +       +K  +       + +K   +  + L ++A + Y
Sbjct: 214 PIKTNFGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDLLNSAKVEY 272


>gi|327312552|ref|YP_004327989.1| putative phage tail component, N-terminal domain-containing protein
           [Prevotella denticola F0289]
 gi|326944288|gb|AEA20173.1| putative phage tail component, N-terminal domain protein
           [Prevotella denticola F0289]
          Length = 474

 Score = 75.9 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 20/289 (6%), Positives = 78/289 (26%), Gaps = 34/289 (11%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
            +  +  + +  ++  +     TING+ ++  +             +G +++ +V E + 
Sbjct: 5   ALLSVALLSATMAYGQTDPTIMTINGQPVSRSEFEYSYN---KNNTDGVIDRKSVDEYVP 61

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
             +  +   ++ +    +T+  F  +                           +    Q 
Sbjct: 62  LFVNYKLKVQAALDAHLDTLPAFRKEFLGYRNQQIRPAFITDADVEDEARKIYRDTKQQI 121

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
                                              +    ++        + +   ++  
Sbjct: 122 ----------------------------DANGGLWHCAHILIGMGQHTSKEEEAAARQLA 153

Query: 203 KDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNP 260
                +  +     +  +++++      + G    L +     +F+  +       T+ P
Sbjct: 154 DSIYTALQKGADFADLAKRYSTDTSSAKNGGDLPRLQKGQTVAEFEKAMLTLKPGETSRP 213

Query: 261 YVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT-KIEKHEAEYVKKL 308
            ++  G   I +     L    +L++ +          ++   + +  L
Sbjct: 214 VLSPFGFHIIRMIGHESLPPYDSLRSDIMQYIEMRGLRDQIINQRLDSL 262


>gi|157164911|ref|YP_001467478.1| putative periplasmic protein [Campylobacter concisus 13826]
 gi|112801060|gb|EAT98404.1| putative periplasmic protein [Campylobacter concisus 13826]
          Length = 276

 Score = 75.9 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 94/302 (31%), Gaps = 30/302 (9%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
               + +   ++  ++  S  M + I   +  E IT  ++        L++     E+ A
Sbjct: 1   MKKLLFLAAGVLSALNLYSAQMINGIAAIVENEPITLYEV------YSLKEQLKTTEQDA 54

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           +  LI + L+  +I+   ++     +N      A+  G++   F + +  QG+    FK 
Sbjct: 55  LNLLIRDRLEDAQIKNLNLSVTPFELNDRIEAIAKQNGMTNSQFRNSIQAQGMDFLDFKN 114

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
            L  + +   + K+       N+  +             + +    V+     +    + 
Sbjct: 115 NLEHKMLQEKLYKSIAAEAGKNINEQKAKAYFDANPDKFKVFSTARVVVYRAKDPDLLEA 174

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
                                + ++ +     +                   +   +  +
Sbjct: 175 QKTSPKLLD----------GVQTQEVSLDYQSID------------PRLAAIISSTNNGD 212

Query: 257 TTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            T P       +   + +K          +K  +  +    + EK  ++Y +KLR+ A I
Sbjct: 213 YTQPLQGPDSFDMFLVKEKIGSYTPSFADVKDNVINELYQGEQEKLMSDYFEKLRAKAKI 272

Query: 315 HY 316
             
Sbjct: 273 QI 274


>gi|121607668|ref|YP_995475.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter
           eiseniae EF01-2]
 gi|121552308|gb|ABM56457.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter
           eiseniae EF01-2]
          Length = 374

 Score = 75.9 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 41/137 (29%), Gaps = 5/137 (3%)

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESD 241
            +        +     +  I+                +  +         G   +L +  
Sbjct: 219 RIRVRHLLVKEKSPEKRALIEQWLAEAKAGKDFAQLAKDHSEDNASAAQGGDLGFLTDGS 278

Query: 242 LHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKI 297
             P F+  LK  K   + +    T  G   I + ++R  G  G   ++  L  Q     +
Sbjct: 279 TVPPFEQALKALKEPGDLSEVVETSFGYHIIRLEERRPAGLRGFDEMRDPLRLQARNALL 338

Query: 298 EKHEAEYVKKLRSNAII 314
            +  A+  ++L+    I
Sbjct: 339 REARAKDAQRLQEEMQI 355


>gi|306845597|ref|ZP_07478166.1| Chaperone surA precursor [Brucella sp. BO1]
 gi|306273918|gb|EFM55745.1| Chaperone surA precursor [Brucella sp. BO1]
          Length = 311

 Score = 75.9 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/280 (10%), Positives = 78/280 (27%), Gaps = 40/280 (14%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             ++NG  I + DI         +     L   A    + E L ++              
Sbjct: 51  AVSVNGVTIDEADILTEAQNHPAENPGAALLSAARALAVRELLLQRAR------------ 98

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                ++ +   D   +      ++   V++ +  +       E
Sbjct: 99  ------------------EIGIEPEHEKDAEGRDETDEDALVRMVIEREVDV-PSASRDE 139

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE-- 220
                +  ++      ++      I  +    +     R      +   + +        
Sbjct: 140 AQRYYENNRHRFTNAPILEASHILIAADPADQEARDAARQTATRLAAAVIAEPATFASVA 199

Query: 221 -KFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN--PYVTQKGVEYIAICDKR- 276
            +++S       G    L      P+F+  L++     T   P  ++ G   + + D+R 
Sbjct: 200 LEYSSCPSGAQGGNLGQLTRGSTVPEFERALERMTPGETTANPIESRFGFHIVRL-DRRV 258

Query: 277 --DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             +      +   ++     +   K  ++Y+  L + A I
Sbjct: 259 EGEELPFDYVADKIAGWLEASTWSKAVSQYIAILAAEAEI 298


>gi|254514389|ref|ZP_05126450.1| peptidyl-prolyl cis-trans isomerase D [gamma proteobacterium
           NOR5-3]
 gi|219676632|gb|EED32997.1| peptidyl-prolyl cis-trans isomerase D [gamma proteobacterium
           NOR5-3]
          Length = 622

 Score = 75.9 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 41/400 (10%), Positives = 93/400 (23%), Gaps = 88/400 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +    +  +    ++I F I  I S      S+     +NGE I+   + + +
Sbjct: 1   MLQDIRANAQGTVAKVIIGLIVISFSIFGIESLLFSGGSNG-VAEVNGEEISPFALQQEL 59

Query: 61  ALLK-------------LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
           ++ +                   ++ + A++ LI   + KQ  +  G+      +     
Sbjct: 60  SVQQRRLLSILGEDADPALLDQAQMSQQALETLIQREIIKQAAKDMGLNTSDQAIADIVG 119

Query: 108 QHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN-------------- 150
              +       S + F   L   G     F++ LA       +                 
Sbjct: 120 SMEQFQIDGQFSPDLFQGALASAGFTPALFRERLAEDVEIGQLRAGVAGSDFSTEAELDL 179

Query: 151 -------------------DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL------- 184
                              DF+      +  +    Q+       E  +           
Sbjct: 180 AASIALEGRDVRYISLPLLDFIASVELSDEAVETFYQQNPERFQSEESVILEYLELGIDA 239

Query: 185 ----------FSIPDNKLQNQGFVQKRIKDAEESR----LRLPKDCNKLEKFASKIH--- 227
                         +          +              R  +     +  +  +    
Sbjct: 240 YRKDVDEERLREEFELVRDEFELSAEARVSHILIEGSDADRAERIAAAQKALSEGMSFAD 299

Query: 228 -----------DVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDK 275
                          G   Y          +  +        +    T+ G   + + D+
Sbjct: 300 AAAEFSDDIGSAQDGGDLGYTAGDTFPEAMEEAIAALGVGEQSAAVETEAGTHLLLVTDR 359

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           R+        + A L  +             V++LR  A 
Sbjct: 360 REGSSVSFEDVAAELEDRIQSRDAAADLLVDVERLRDIAF 399


>gi|294102245|ref|YP_003554103.1| hypothetical protein Amico_1258 [Aminobacterium colombiense DSM
           12261]
 gi|293617225|gb|ADE57379.1| hypothetical protein Amico_1258 [Aminobacterium colombiense DSM
           12261]
          Length = 358

 Score = 75.9 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 48/329 (14%), Positives = 109/329 (33%), Gaps = 22/329 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIV----SYKSWAMSSRIRTTINGEVITDGDI 56
           +   +  ++   +      FVL IF +        + K   +       I+G+ +    +
Sbjct: 2   LMRSLRENMRWIMFGFVVIFVLSIFGMYGFSGRQRAPKGEGVQDYAVAEIDGKKVMRSTL 61

Query: 57  SKRIALLKLQKINGE--------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
              +     +    +        + +  +  +I+ET   + +E  G+      ++    Q
Sbjct: 62  EANVMNYVERNNVKDVSSNDLMAIRQAVLDGMIIETELAKAVESRGVKASDQEIDDVIKQ 121

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
              N   + E F   L    I  +  +  +  Q     VV+            E+     
Sbjct: 122 -ISNQFPTIEAFQKHLSDNDIKMDALRANIGTQLSQQKVVEQA-ASTVVVTPEEVQEFYD 179

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
           K K+        R V+++   NK       ++  KD  +    L +  ++ +K +     
Sbjct: 180 KGKDAFFSRPAGRKVVYARFSNKEAADKIYEELKKDGSKWDALLEEVTSEDKKESIGYEA 239

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYV-TQKGVEYIAICDKRDLG--GEIALK 285
                  ++ ES +  +F+ L   S      P   T   +  +   +  +        + 
Sbjct: 240 PV-----FVPESGMQDKFETLKDLSVGQVAPPIEITSNDIMVVLNKEVLEASTVSFDEVS 294

Query: 286 AYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             + A  T  K E+ + ++V +L+ NA +
Sbjct: 295 NDIKALLTNQKNEEAQMKFVSELKENAKV 323


>gi|330998838|ref|ZP_08322565.1| putative peptidylprolyl isomerase PrsA1 [Parasutterella
           excrementihominis YIT 11859]
 gi|329576052|gb|EGG57571.1| putative peptidylprolyl isomerase PrsA1 [Parasutterella
           excrementihominis YIT 11859]
          Length = 261

 Score = 75.9 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 81/279 (29%), Gaps = 48/279 (17%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKING--ELEKIAVQELIVETLKKQEIEKSGITFDSN 100
             T+NG+ I      + +A L         E  +   + L+   L +QE  K  I+ D  
Sbjct: 24  IATVNGKPIPKSLQDEWVAQLVANGGKDTPEARRQITENLVANALVEQEAAKRKISDDPK 83

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                               Y   + +   +++++      + +
Sbjct: 84  VKFAL------------------------------DYAKFRILQEALLRDEMAKHPVSEK 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
                 +++   +  +EY +  +L              QK  ++ E+            +
Sbjct: 114 EIKARYEEEKAALGNKEYEVSHIL-----------VKDQKTAENIEKKLAAGGNFAALAK 162

Query: 221 KFASKIHDV-SIGKAQYLLESDLHPQFQNL-LKKSQNNTTN-PYVTQKGVEYIAICDKRD 277
           +F+       + G   +   +     F +      +   +  P  T+ G   I + D ++
Sbjct: 163 EFSVDTGAKENGGDLGWNRPAVFVKPFADAVKNMKKGEISKAPVKTEFGWHIIKVNDVKE 222

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +         +  Q       K +  ++ +L     I Y
Sbjct: 223 VPF--PTYDSVKDQIREGLELKKQQNFLNELMKTNKIEY 259


>gi|115378201|ref|ZP_01465373.1| peptidyl-prolyl cis-trans isomerse domain protein, putative
           [Stigmatella aurantiaca DW4/3-1]
 gi|115364789|gb|EAU63852.1| peptidyl-prolyl cis-trans isomerse domain protein, putative
           [Stigmatella aurantiaca DW4/3-1]
          Length = 589

 Score = 75.9 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/318 (9%), Positives = 72/318 (22%), Gaps = 68/318 (21%)

Query: 47  NGEVITDGD-----------ISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGI 95
           NG+ I   D           +  R   +        L    + +L+   L  Q  E+ GI
Sbjct: 116 NGKEIPLRDFSRVYAGQLNSLRNRGVPIPESYARQSLPSQVMDQLVTRELLSQAAERHGI 175

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP---DVVKNDF 152
               + +     ++A        +F  +           +     +         +    
Sbjct: 176 NPSDDELRKLIHENADFHKDGQFNFEQYKRALRDYYRTTEPKYEEELRRQLAAQKMLQVV 235

Query: 153 MLKYGNLEMEIP----------------------------------ANKQKMKNITVREY 178
                  + E+                                      +K  N  +  Y
Sbjct: 236 NSGAVVSDDEVRARYEKDANQAKVVFARFLPTMYAAQVPAPTPAQLEEFRKAHNDEISTY 295

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKD----------------AEESRLRLPKDCNKLEKF 222
                       + + +  + K   D                 +E             + 
Sbjct: 296 YESNRFMYQQAERAKARQILVKLAPDAAAQQKAEAKSRAEALHKEVTEGGKDFATVARER 355

Query: 223 ASKI-HDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           +       S G   ++  + L     + +   + N  + P  T+ G   + + +K+    
Sbjct: 356 SEDPGTKASGGDLGWVERASLEPTLAEAVFALAPNGVSQPIETKLGWHVVKVEEKQAAQD 415

Query: 281 E--IALKAYLSAQNTPTK 296
           +        ++      +
Sbjct: 416 KKLEEAAPEIATTLYKQQ 433


>gi|89095457|ref|ZP_01168368.1| peptidyl-prolyl cis-trans isomerase D, putative [Oceanospirillum
           sp. MED92]
 gi|89080287|gb|EAR59548.1| peptidyl-prolyl cis-trans isomerase D, putative [Oceanospirillum
           sp. MED92]
          Length = 627

 Score = 75.9 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/259 (11%), Positives = 70/259 (27%), Gaps = 5/259 (1%)

Query: 60  IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR-NTGLSAE 118
           ++   L +     E+  +  L+       E+ +     + +    +F   A         
Sbjct: 148 LSYRALVRKEKLTEQERIAYLLSAFTLSNELNEIATLQNQSRDTRYFTLAAEPERAAQTV 207

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
                 D        +     +   +  + + D          E+ A  Q+M +    + 
Sbjct: 208 SDDEVADYFAQNSGQYLSDEQVAIEYIVLDRADLEKDVEVTADEVSAAYQQMVDSYQAQE 267

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYL 237
           L +     +  +  Q     + + K   +            +  +         G     
Sbjct: 268 LRQAAHIMVEISDEQEAAAAETKAKALLDRLNAGEDFAAVAQSDSDDPASAEMGGDLGVN 327

Query: 238 LESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTP 294
            +     +F++ L    +   + P  T+ G   I + D    ++      KA +      
Sbjct: 328 EKGTFSAEFEDALYALEKGQISEPVQTEFGYHLIKLLDVVESEVPTFEEAKAGIERDLLN 387

Query: 295 TKIEKHEAEYVKKLRSNAI 313
            K E      +  L+  A 
Sbjct: 388 EKAELEFVAQLDTLKDVAF 406



 Score = 57.4 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 44/126 (34%), Gaps = 13/126 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +    I  +    + + F +  + S  S    S    T+NGE ++  ++ + +
Sbjct: 1   MLQSIRDNSQGIIAKIIVGLIAVTFALFGVESLVSLTGGSNAPATVNGEEVSQQELVQGM 60

Query: 61  ALLKLQK-------------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
            L + Q               +  +  + ++ LI + +  Q  E  G+ F    ++   V
Sbjct: 61  RLQRNQMLSQMGENADPGLLNDNLISSMVLEGLIEQKVLVQSAENQGLVFTDAMIDQLIV 120

Query: 108 QHARNT 113
                 
Sbjct: 121 STKDFQ 126


>gi|221633228|ref|YP_002522453.1| putative post-translocation molecular chaperone [Thermomicrobium
           roseum DSM 5159]
 gi|221156643|gb|ACM05770.1| putative post-translocation molecular chaperone [Thermomicrobium
           roseum DSM 5159]
          Length = 464

 Score = 75.9 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 12/120 (10%), Positives = 33/120 (27%), Gaps = 9/120 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQ 254
             ++  + A               + +       + G   +L    +   F +     + 
Sbjct: 300 ATREAAEQALADIQGGADFATIARERSIDSDTAPNGGDLGWLPRGYMPSAFDEVAFALAP 359

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                P  TQ G   + + ++            LS +       +  + ++ + R  + I
Sbjct: 360 GEVGGPVQTQYGWHIVKVLERDPDRP-------LSERMLQALRGQALSRWLDEQRRTSTI 412


>gi|152974691|ref|YP_001374208.1| peptidylprolyl isomerase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152023443|gb|ABS21213.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus cytotoxicus
           NVH 391-98]
          Length = 285

 Score = 75.9 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/303 (9%), Positives = 77/303 (25%), Gaps = 45/303 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
            T  +  +      +S      SS    T     IT GD  K++             K  
Sbjct: 4   KTLLIATLAIGTFTLSACGAQGSSDAIATSKFSTITKGDFEKQLK--------SRYGKDV 55

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           + E++ + +  ++ + S    +                   +    F           + 
Sbjct: 56  LYEMMAQDIMTKKYKVSNEAVNKEFK-----------KAKEQFGDQFKAVLESNRLKDED 104

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q  +   ++          +++     +   +                        
Sbjct: 105 DFKNQIRFKLAMEQAIKESITEKDIKANYKPEIKASHI--------------------LV 144

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +++  + ++            ++ +         G   Y     + P+F+    K   
Sbjct: 145 NNEEKANEIKKKLDEGASFEELAKQESEDPGSKEKGGDLGYFGPGKMAPEFEEAAYKLKV 204

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE---AEYVKKLRSN 311
              + P  +  G   I + DK++L     +K  +       +I          + + +  
Sbjct: 205 GEISKPIKSSYGYHIIKLTDKKELKPYNEVKDSIRKNLEKERIADQAIHQKILLNEFK-K 263

Query: 312 AII 314
           A I
Sbjct: 264 ADI 266


>gi|303256912|ref|ZP_07342926.1| probable parvulin-type peptidyl-prolyl cis-trans isomerase
           [Burkholderiales bacterium 1_1_47]
 gi|302860403|gb|EFL83480.1| probable parvulin-type peptidyl-prolyl cis-trans isomerase
           [Burkholderiales bacterium 1_1_47]
          Length = 261

 Score = 75.9 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 81/279 (29%), Gaps = 48/279 (17%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKING--ELEKIAVQELIVETLKKQEIEKSGITFDSN 100
             T+NG+ I      + +A L         E  +   + L+   L +QE  K  I+ D  
Sbjct: 24  IATVNGKPIPKSLQDEWLAQLVANGGKDTPEARRQITENLVANALVEQEAAKRKISDDPK 83

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                               Y   + +   +++++      + +
Sbjct: 84  VKFAL------------------------------DYAKFRILQEALLRDEMAKHPVSEK 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
                 +++   +  +EY +  +L              QK  ++ E+            +
Sbjct: 114 EIKARYEEEKAALGNKEYEVSHIL-----------VKDQKTAENIEKKLAAGGNFAALAK 162

Query: 221 KFASKIHDV-SIGKAQYLLESDLHPQFQNL-LKKSQNNTTN-PYVTQKGVEYIAICDKRD 277
           +F+       + G   +   +     F +      +   +  P  T+ G   I + D ++
Sbjct: 163 EFSVDTGAKENGGDLGWNRPAVFVKPFADAVKNMKKGEISKAPVKTEFGWHIIKVNDVKE 222

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +         +  Q       K +  ++ +L     I Y
Sbjct: 223 VPF--PTYDSVKDQIREGLELKKQQNFLNELMKTNKIEY 259


>gi|49085090|gb|AAT51251.1| PA0699 [synthetic construct]
          Length = 315

 Score = 75.5 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 68/245 (27%), Gaps = 6/245 (2%)

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           ++A  EL     +     ++ ++ + + +  +         L  +  +    ++      
Sbjct: 55  QVAPDELKALLAEVPAETRAQLSENRDAMERWMRARLAEKALYEQASAQDWQQRPQVKTL 114

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                    +   +     + +    + E+ A  Q  K       L R     I  +   
Sbjct: 115 IGAAARQIVLRTYLESVSTVPEDYPSDAELQAAYQANKAQLAVPALYRVSQIFIAASAAG 174

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESD--LHPQFQNLL 250
                +KR ++                K +       + G    LL     L      L 
Sbjct: 175 GLAEARKRAQELYRQAADG-DFAELARKHSDDPQTARNGGDIGGLLAQAQLLPAIRPALE 233

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
           +      + P     G   + + ++RD        ++  L       + E+    Y+  L
Sbjct: 234 RLKVGAVSEPIQGANGFHLVKLTERRDARLATLDEVRGRLRESLRAQRQEQIAKAYLDGL 293

Query: 309 RSNAI 313
            +NA 
Sbjct: 294 VNNAT 298


>gi|329925504|ref|ZP_08280378.1| PPIC-type PPIASE domain protein [Paenibacillus sp. HGF5]
 gi|328939787|gb|EGG36127.1| PPIC-type PPIASE domain protein [Paenibacillus sp. HGF5]
          Length = 361

 Score = 75.5 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/315 (9%), Positives = 87/315 (27%), Gaps = 8/315 (2%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIV-SYKSWAMSSRIRTTINGEVITDGDISKR 59
           M S+   +   FI  +T    + +        +  +   +S++     G  IT+ +    
Sbjct: 1   MPSRNNKAWKTFIVSITAVLSMSMIAACGNDKTKGAEEDNSKVIVKYKGGEITEKEFDLE 60

Query: 60  IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
             +++            + E      K+    +       +       +   +     + 
Sbjct: 61  QRMIQFMSPEYAQFLQ-MDEFKEYLAKQGVAYEYLYAKADDKAKEAAEKQTDDLLKQQKA 119

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
                  +   ++       +++    V+      K    E +I       K       +
Sbjct: 120 GMGEEQFKAALESQKLTEDDLKNYMLRVMTVMEHEKNQVTEEDIKKEFDANKKDYTNISV 179

Query: 180 IRTVLFSIPDNKLQNQG-FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYL 237
              ++        +       K  K+ +    +        ++++       S G  +  
Sbjct: 180 RHVLIAFQDAEGKERPEGEALKIAKEVQSKLNKGEDFAALAKEYSQDPGSKDSGGLYENK 239

Query: 238 LESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEI---ALKAYLSAQNT 293
                 PQF+        N  ++P  T  G   + +  + ++  +      K  + ++  
Sbjct: 240 PAGSWVPQFKEKALTLELNKISDPVETDYGYHVMKVEKREEVTYDKLPADQKEGIRSELA 299

Query: 294 PTKIEKHEAEYVKKL 308
             KI+      +  L
Sbjct: 300 SAKIDNFMQNELNNL 314


>gi|330996061|ref|ZP_08319955.1| PPIC-type PPIASE domain protein [Paraprevotella xylaniphila YIT
           11841]
 gi|329574058|gb|EGG55636.1| PPIC-type PPIASE domain protein [Paraprevotella xylaniphila YIT
           11841]
          Length = 479

 Score = 75.5 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 28/298 (9%), Positives = 79/298 (26%), Gaps = 43/298 (14%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
            +K++  +   +  C + +        +  +   ING+ ++  +                
Sbjct: 1   MMKMMRKF--ALWCCSLCLTGILYAEGNDPVVMKINGKDVSRSEFE-------YNFNKNN 51

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
            E +  ++ + E +      K  +    +          +      +             
Sbjct: 52  GENVVDKKTVDEYVDLFVNYKLKVEAALDARYDTLSSFKKEFRTYRDQQI---------- 101

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                               + +     E E+      MK     + L+      I   +
Sbjct: 102 ------------------RPYFVSLSAEEKELRRYYDGMKASIGPDGLVHPAHIMILVAQ 143

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEK----FASKIHDVSIGKAQ-YLLESDLHPQF 246
                   K  +  +     L +  +         A K      G    +  +     +F
Sbjct: 144 KATPEEQAKAKERIDSIYTALQQGADFATLAKQCSADKGSAARGGDLGGWFAKGQTLKEF 203

Query: 247 QNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAE 303
           +++    ++   + P+++  G   + + D++ L     LK  L        +++  A 
Sbjct: 204 EDVAFSLNKGEMSKPFLSPMGYHIVWMKDRKQLEPYEELKPQLQRFLESRGLKERVAS 261


>gi|228990245|ref|ZP_04150213.1| Foldase protein prsA 2 [Bacillus pseudomycoides DSM 12442]
 gi|228996340|ref|ZP_04155983.1| Foldase protein prsA 2 [Bacillus mycoides Rock3-17]
 gi|229004004|ref|ZP_04161808.1| Foldase protein prsA 2 [Bacillus mycoides Rock1-4]
 gi|228757218|gb|EEM06459.1| Foldase protein prsA 2 [Bacillus mycoides Rock1-4]
 gi|228763379|gb|EEM12283.1| Foldase protein prsA 2 [Bacillus mycoides Rock3-17]
 gi|228769484|gb|EEM18079.1| Foldase protein prsA 2 [Bacillus pseudomycoides DSM 12442]
          Length = 284

 Score = 75.5 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/300 (10%), Positives = 77/300 (25%), Gaps = 45/300 (15%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           +        ++S      +S    T     IT GD  K++             K  + E+
Sbjct: 8   IATAALGTLMLSACGPKDNSEAIATSKVSTITKGDFDKQLK--------ERYGKDMLYEM 59

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           + + +  ++ + S    D                   +    F           +     
Sbjct: 60  MAQDIMTKKYKVSDDEVDKEFK-----------KAKDQFGDQFKTVLESNRLKDEDDFKN 108

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           Q  +   +         + +++     +   +                          +K
Sbjct: 109 QIRFKLAMNEAIKKSITDKDVKANYKPEIKASHI--------------------LVNDEK 148

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT 258
              D ++            ++ +       + G   Y     + P+F+    K +    +
Sbjct: 149 TANDIKKQLDEGASFEELAKQQSQDPGSKENGGDLGYFGPGKMVPEFEEAAYKLNVGEIS 208

Query: 259 NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE---AEYVKKLRSNAIIH 315
            P  + +G   I + DK++L     +K  +        +          + + +  A I 
Sbjct: 209 KPIKSSQGYHIIKLTDKKELKPYDEVKDSIRKNLEEKLLADQTTGQKILLDEFK-KADIK 267


>gi|68171990|ref|ZP_00545291.1| conserved hypothetical protein [Ehrlichia chaffeensis str. Sapulpa]
 gi|67998586|gb|EAM85338.1| conserved hypothetical protein [Ehrlichia chaffeensis str. Sapulpa]
          Length = 395

 Score = 75.5 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 109/297 (36%), Gaps = 12/297 (4%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI--NGELEKIAVQELI 81
           +  +  I+   +   S +I   +N E+I++ D+ KRIA+ K          E+IA+  LI
Sbjct: 8   LLVLFIILYSSNVFASVKIVAMVNDELISNLDLEKRIAINKFFYKVEGNTAEEIALNALI 67

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
            E++ +QE  K  +T     +     Q      L   D  S+++ QG+    F Q++  +
Sbjct: 68  DESIWRQEARKLKVTVTERDLLEAIKQFLVIKNLGNIDLKSYVEAQGLDYKLFVQHMKSK 127

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
            +W  ++           + E+  ++  M    +   +   +   +    + +   +   
Sbjct: 128 LLWNKILMLKIAPYIIISDKEVQDSRDNMVGNGLD--ISVHIQEVMLPASMNDNESIISS 185

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPY 261
           I    +S + +       +    +   V++      L + L       L     +   P 
Sbjct: 186 IISELQSGVSVETIKANRKDVLFEEASVNVKNIDANLANKL-------LNAKIGDVIGPM 238

Query: 262 VTQKGVEYIAICDKRDLGGEIALKA-YLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            ++ G   I +  + D+  E A     L   +   +  K   + +  L++ A    +
Sbjct: 239 KSEYGTLIIKLIHRSDINKEFANSNVDLRQMHLNIEQGKEYLDQISILKTKATCENF 295


>gi|298206782|ref|YP_003714961.1| peptidyl-prolyl cis-trans isomerase [Croceibacter atlanticus
           HTCC2559]
 gi|83849414|gb|EAP87282.1| peptidyl-prolyl cis-trans isomerase [Croceibacter atlanticus
           HTCC2559]
          Length = 652

 Score = 75.5 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/271 (10%), Positives = 81/271 (29%), Gaps = 39/271 (14%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +  Y  L +FC++   +  +  +  +I  T++GE +   D  +          +   +  
Sbjct: 1   MKLYRFLFVFCLLIAGNTIAQELDKQIIMTLDGEPVYASDFVRVYQKNLDLVQDESQKD- 59

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
                + E LK     +  +           ++  R        F+             +
Sbjct: 60  -----VDEYLKLFIDYRLKLREAYEQGLDTTLKFQREFKTYRNQFA-------------R 101

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
            +L   ++   +V+  +      +                       ++    +   ++ 
Sbjct: 102 NFLTDNNVSEALVQEAYDRTVNEVNA------------------SHILIRVNQNATPEDT 143

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD-VSIGKAQYLLESDLHPQFQNL-LKKS 253
                +IKD  E  +         + ++       + G+  +     +   F+       
Sbjct: 144 LKAYSKIKDIREKAVNGRSFETLAKTYSEDPSAKKNGGELGWFTALKMVYAFEEQAYTVP 203

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIAL 284
             + + P+ T+ G   + + D+R   GE+ +
Sbjct: 204 VGDVSEPFRTRFGYHILKVNDRRASAGEVEV 234



 Score = 60.1 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/270 (8%), Positives = 68/270 (25%), Gaps = 16/270 (5%)

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             L    ++  L + A    + E      + +             + +       +    
Sbjct: 102 NFLTDNNVSEALVQEAYDRTVNEVNASHILIRVNQNATPEDTLKAYSKIKDIREKAVNGR 161

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY-- 178
           S     +   ++   +    +  W   +K  +  +     + +    +  +         
Sbjct: 162 SFETLAKTYSEDPSAKKNGGELGWFTALKMVYAFEEQAYTVPVGDVSEPFRTRFGYHILK 221

Query: 179 ---------LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHD 228
                     +      +           + RI++      +        ++F+      
Sbjct: 222 VNDRRASAGEVEVAHIMVSPKPKDTVFNPKDRIEELYLKVKQGEDFGVLAKQFSDDRNSA 281

Query: 229 VSIGKAQYLLESDLHPQF---QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK 285
              GK        L+ +    +          T P+ TQ G   I + D+  +     ++
Sbjct: 282 RREGKLDRFGSGKLNSEVFEKKAFSLTKAGQVTEPFETQYGWHIIKLIDRFPIPSFNEMR 341

Query: 286 AYLSAQN-TPTKIEKHEAEYVKKLRSNAII 314
             L  +    ++        V  L+ +  I
Sbjct: 342 GELEKKVTKDSRANLISDALVAGLKDHYSI 371


>gi|225621308|ref|YP_002722566.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brachyspira
           hyodysenteriae WA1]
 gi|225216128|gb|ACN84862.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brachyspira
           hyodysenteriae WA1]
          Length = 317

 Score = 75.5 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 40/321 (12%), Positives = 102/321 (31%), Gaps = 21/321 (6%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI---N 69
           +K +  + +  IF    ++      + + I   +    IT  D   R   L LQ      
Sbjct: 1   MKKIIVFILSFIFIQSNLLFND---VVNSIVGIVGSMPITYEDFLSRKTFLTLQARSIGQ 57

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
              + +  ++L+ E +   +++++    + N V       A+   ++A+ F+  L  +GI
Sbjct: 58  KVTDDMVYKDLVEERVMYLKLKENNFVIEENDVKRRLESIAKQYNMNADQFAKQLMAEGI 117

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFML-KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
               +K  +  Q    ++        +  + E +   N  K K+    + L++       
Sbjct: 118 SYEEYKNSIKKQIAMENLYGLVVNNTEISDKEADEFYNNTKDKSAFEADTLVKLSWIFFK 177

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYL-----LESDL 242
                 +G  Q+          R        ++++       + G   Y       +  L
Sbjct: 178 AATFTEKGEKQELASKVRGMAARGQDFAELAKQYSEDEATRKNGGDLGYNLLYDAGKRSL 237

Query: 243 HPQFQ-----NLLKKSQNNTTNPYV-TQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK 296
             Q                 ++      KG   + I +        +++  +    +  K
Sbjct: 238 PAQINAGLNLAKRGYKVGTVSSVRELVGKGFYIVKIMEIE--KDMESIRTRVKNYLSEAK 295

Query: 297 IEKHEAEYVKKLRSNAIIHYY 317
           + +   +++ +      +  Y
Sbjct: 296 MRESFIKWLDEETKRVSVQIY 316


>gi|94677050|ref|YP_588994.1| peptidylprolyl cis-trans isomerase SurA [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
 gi|122070619|sp|Q1LSS0|SURA_BAUCH RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|94220200|gb|ABF14359.1| peptidylprolyl cis-trans isomerase SurA [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 433

 Score = 75.5 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/299 (9%), Positives = 97/299 (32%), Gaps = 15/299 (5%)

Query: 31  VSYKSWAMSSRIRTTINGEVITDGDI--------SKRIALLKLQKINGELEKIAVQELIV 82
            +     +  ++   +N ++I + ++        +      + Q  + +L K  +  LI+
Sbjct: 21  CAIAEPNLIDQVVAIVNNDIILESELKILRDSIQNYAKLNYQEQLEDNQLNKHIIDRLII 80

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           + + +Q+ + S IT     +N        +  LS       +       + ++  L    
Sbjct: 81  KKIIQQQAKLSHITIAETKLNKIIHDLTSSQNLSIAKLRHLMYSNRNIYDIYRAQLRQDL 140

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG-FVQKR 201
           +  +V+ +    +   L  E+    +K+       + +  +L  +P+   + Q    +  
Sbjct: 141 LIAEVLNSALHRRITILPQEVEFLAKKIAIRKNTTFNLSHMLIPLPEKPSRKQKNEAEAL 200

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNP 260
                    +         K+++    ++      +  + L     ++L    + +   P
Sbjct: 201 ALFLMAQSEKQNDFRELAIKYSTDTQMLNSFSMIGIQHTKLPLILAKHLYGAQKGSVIGP 260

Query: 261 YVTQKGVEYIAICD-----KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             +  G+  + + D       ++        ++  + +  + +      +  +     I
Sbjct: 261 IYSDIGIHILKVHDMIRTHMSNIPITEVYARHILLRTSVKRNDNQARVQLLNIARKINI 319



 Score = 59.3 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 2/154 (1%)

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
              +  M NI + E   R +L      +  NQ  VQ      + +   +       +   
Sbjct: 274 DMIRTHMSNIPITEVYARHILLRTSVKRNDNQARVQLLNIARKINIGDISFSIVAKQISE 333

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEI 282
             I     G   +   +   P F+ LL   ++   + P  + +G   I + + R +    
Sbjct: 334 DIISSQQGGDLGWNALNAFTPTFRKLLLSLNKGQLSIPVRSSQGWHLIQLQNIRQVEN-T 392

Query: 283 ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             K          K+ +    ++++ R  A I  
Sbjct: 393 TNKEAAYRILWHRKLAEIAHIWIQEQRDLAYIKI 426


>gi|15806083|ref|NP_294787.1| peptidyl-prolyl cis-trans isomerase C [Deinococcus radiodurans R1]
 gi|6458794|gb|AAF10636.1|AE001957_4 peptidyl-prolyl cis-trans isomerase C [Deinococcus radiodurans R1]
          Length = 344

 Score = 75.5 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 22/308 (7%), Positives = 73/308 (23%), Gaps = 46/308 (14%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISK-----------------------RIALLKLQKING 70
            +      +   +  + +T  D  +                         A  + + +  
Sbjct: 47  STTQSPDAVVARVGNQTLTLADFDRSFRVAVAGVVNAQGLPLSDDLLAEFASSRPEYLKQ 106

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
            + + A+ +L           ++ +  D+  ++    Q     G  A+   +        
Sbjct: 107 FVREQALTQL----------ARASVKPDAAAIDAQLAQARAGFGSDADFQQALTQTGYGS 156

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
            +  +  L  Q++    +++    ++   +  +       ++   R+         +   
Sbjct: 157 ADDLRAGLERQAVIAPYLQS-VQKRFTFGDAIVNGYYNLHRDAFTRDAEACVKHILVATE 215

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL 249
                                        +  +         G    +   D    F   
Sbjct: 216 AEAKTIVTD---------LSAGKDFAAVAKAKSQDPGSAAEGGDLGCIAPGDTVAAFDKA 266

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
                 N      T+ G   + +  +R   G + L    +         +   +Y+    
Sbjct: 267 SFSGPLNQPQVVQTEYGWHVLTV-SRRSAAGLLPL-TEAAPLIREQLSREAAQKYLDAQI 324

Query: 310 SNAIIHYY 317
           +   +  +
Sbjct: 325 ARIKVETF 332


>gi|237747325|ref|ZP_04577805.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oxalobacter
           formigenes HOxBLS]
 gi|229378676|gb|EEO28767.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oxalobacter
           formigenes HOxBLS]
          Length = 259

 Score = 75.5 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/305 (11%), Positives = 79/305 (25%), Gaps = 50/305 (16%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL--QKINGEL 72
           ++    VL    +  I +             +NG+ I        +  L    +K   +L
Sbjct: 1   MIKKALVLSAISLSLISTTVFAEN----LAVVNGKPIPASHSDALVKELVSYGEKDTPQL 56

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            +    +L++  +  QE EK  +                                     
Sbjct: 57  RQDIKNKLVLREVLVQEAEKQNVASSDEVKKQL--------------------------- 89

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
              ++     +   +  N       + +       +       ++Y ++ +L     +  
Sbjct: 90  ---EFAKRSIMIDALRTNYLKKNPVSDKEIKAEYDRVASLQNGQQYHVKHILVKNEADAQ 146

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
                + K     + ++ +     +              G   +   S+    F + +  
Sbjct: 147 NIINQLNKGANFEKIAKEKSIDQGSAAR----------GGDLSWASPSNYIKPFSDAMIA 196

Query: 253 -SQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
             +   T  P  TQ G   I + D R           +  +   +  E+   EY   L  
Sbjct: 197 LKKGQITKTPVKTQFGYHIIKLVDVRKATL--PSLNQVKPKIKTSLEERKWQEYEMNLMK 254

Query: 311 NAIIH 315
            A I 
Sbjct: 255 QAKIE 259


>gi|225154955|ref|ZP_03723452.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Opitutaceae
           bacterium TAV2]
 gi|224804314|gb|EEG22540.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Opitutaceae
           bacterium TAV2]
          Length = 332

 Score = 75.5 bits (183), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 28/308 (9%), Positives = 79/308 (25%), Gaps = 33/308 (10%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSS-RIRTTINGEVITDGDISKRIALLKLQKINGE 71
           ++ + +   +   C     S+ + A +   I   ++   +   DI   +  L  Q     
Sbjct: 25  LRAIASGNAIFALCAASAFSFSASAAADAGILARVSDTEVKIDDIRSSLENLSPQDQAAL 84

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
                                         +N           +  E  +   D+     
Sbjct: 85  AANP------------------------ALLNQTVRSLLARRVVLNEALAQKWDQHPAFT 120

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
             F++      I   +            E ++ A  +  +        +R     I   +
Sbjct: 121 AQFEKLRENALIESYLQSVSQPPADFPSEADLQAVYEANRAALTAPRQVRLAQIYIAAPR 180

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS-----KIHDVSIGKAQYLLESDL-HPQ 245
             +     +     ++ + +L +        A      K    + G+  +L +       
Sbjct: 181 SADSATQDEARARLDDVKKKLAQKGADFAALARVESDEKRSAANGGELGWLTDGQFRPEI 240

Query: 246 FQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG--EIALKAYLSAQNTPTKIEKHEAE 303
              L   +      P     G   +   + R+        +++ L+ +    + + +   
Sbjct: 241 LDTLKNLAAGQVGEPLRLDDGWHILKALEVREARPLTLDEVRSQLAQRLRAERAQANRQT 300

Query: 304 YVKKLRSN 311
           ++ +L   
Sbjct: 301 HLARLLEK 308


>gi|307730260|ref|YP_003907484.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1003]
 gi|307584795|gb|ADN58193.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1003]
          Length = 304

 Score = 75.5 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/286 (11%), Positives = 65/286 (22%), Gaps = 55/286 (19%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              +N  VIT   +   +           L      ++I   L +Q  EK          
Sbjct: 59  VARVNNVVITQAQLDDAVRASNAPDTP-TLRASIKNQMIARELFRQAAEKQHY------- 110

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                                 Q +          +    L  +
Sbjct: 111 ----------------------------------ESRPQVVAAVEQAKSAAMTAAYLRDQ 136

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +        ++  +   I   L                  +       +        +++
Sbjct: 137 VKPAPVTDADVKAKYDAIVATLGEFEYKPSAIAVKDADTAQTVLTQLKKGTDFAQLAKQY 196

Query: 223 ASKIHDVSIGKAQYL----------LESDLHPQFQNLLKKSQNNT-TNPYVTQKGVEYIA 271
           +        G   ++           ++   P  + L+K  Q    + P         + 
Sbjct: 197 SQGPGAAQGGALNWISFRTPIQPGNTQNWPQPLAEALVKLPQGGVSSAPVQVGDAFWILR 256

Query: 272 ICDKRDLGG--EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           + +KR         +K  L  Q     ++K  A+ V  L  NA I 
Sbjct: 257 VDEKRPTQVPQYDQIKDTLRKQLEQVALQKATAQVVVDLMKNARIQ 302


>gi|75758814|ref|ZP_00738928.1| Peptidyl-prolyl cis-trans isomerase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74493718|gb|EAO56820.1| Peptidyl-prolyl cis-trans isomerase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 254

 Score = 75.5 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 88/287 (30%), Gaps = 40/287 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S +I T+  G+ IT  +   ++          +  K 
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKIVTSKAGD-ITKEEFYDQMKT--------QAGKQ 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +++E +  +  +      D                L  + F + + +QGI +   K
Sbjct: 52  VLNNMVMEKVLIKNYKVEDKDVDKKFD--------EMKKLYGDQFDTLMKQQGIKEETIK 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +  Q      V+     K    + E    + K  +I V++                  
Sbjct: 104 NSVRAQLAQEKAVEQSITDKDVKAKFEDYKKEIKASHILVKD------------------ 145

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              ++  K  ++   +        ++++         G   +     +  +F+   +K  
Sbjct: 146 ---EETAKKVKDELAQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGKMVKEFEEAAQKLK 202

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH 300
           ++  + P  TQ G   I + D          KA +       K +  
Sbjct: 203 KDEVSEPVKTQFGYHIIKVTDNHADATFDKSKADIKKSLAQEKTQDA 249


>gi|254720016|ref|ZP_05181827.1| Chaperone surA precursor [Brucella sp. 83/13]
 gi|265985025|ref|ZP_06097760.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. 83/13]
 gi|306838443|ref|ZP_07471287.1| Chaperone surA precursor [Brucella sp. NF 2653]
 gi|264663617|gb|EEZ33878.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. 83/13]
 gi|306406482|gb|EFM62717.1| Chaperone surA precursor [Brucella sp. NF 2653]
          Length = 311

 Score = 75.5 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/280 (10%), Positives = 78/280 (27%), Gaps = 40/280 (14%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             ++NG  I + DI         +     L   A    + E L ++              
Sbjct: 51  AVSVNGVTIDEADILTEAQNHPAENPGAALLSAARALAVRELLLQRAR------------ 98

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                ++ +   D   +      ++   V++ +  +       E
Sbjct: 99  ------------------EIGIEPEHEKDAEGRAETDEDALVRMVIEREVDV-PSASRDE 139

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE-- 220
                +  ++      ++      I  +    +     R      +   + +        
Sbjct: 140 AQRYYENNRHRFTSAPILEASHILIAADPADQEARDAARQTATRLAAAVIAEPATFASVA 199

Query: 221 -KFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN--PYVTQKGVEYIAICDKR- 276
            +++S       G    L      P+F+  L++     T   P  ++ G   + + D+R 
Sbjct: 200 LEYSSCPSGAQGGNLGQLTRGSTVPEFERALERMTPGETTANPIESRFGYHIVRL-DRRV 258

Query: 277 --DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             +      +   ++     +   K  ++Y+  L + A I
Sbjct: 259 EGEELPFDYVADKIAGWLEASTWSKAVSQYIAILAAEAEI 298


>gi|224417667|ref|ZP_03655673.1| hypothetical protein HcanM9_00172 [Helicobacter canadensis MIT
           98-5491]
 gi|253827018|ref|ZP_04869903.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313141212|ref|ZP_07803405.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|253510424|gb|EES89083.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313130243|gb|EFR47860.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 282

 Score = 75.5 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/300 (14%), Positives = 95/300 (31%), Gaps = 25/300 (8%)

Query: 16  LTTYFVLIIFCIVPIV-SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +  Y +  +   V I  ++ + ++ + I   +NG  +T  D+       K+Q+ +   + 
Sbjct: 1   MKKYLLTSLLSFVVISHAFGAPSLVNGIAFFVNGNPVTLLDV------YKVQQRDKVEQN 54

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
           +AV  LI E L ++EI+K  I      +N      AR    + E   S++   G    ++
Sbjct: 55  LAVDILINEKLHEEEIKKHKIVATELELNDEISAIARQNQTTPEQLESYIRTNGGNWENY 114

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
           K+ +  + +   + +         ++     +                V           
Sbjct: 115 KEEIKKRILKRKLYQIISQESLKMVDENQLRSYYDTHKEEFSIPQSIDVTKFFSKEGAAL 174

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ 254
           +  ++   KD  +   +  +           +   + GK                     
Sbjct: 175 ETLIKSGGKDIPKGIGQENEVLQTTALNPQIVSAFTQGKIGSFTP--------------- 219

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                P         I   +   L     ++  +  +    K +    EY +KLRSNA +
Sbjct: 220 ---IYPIGEDFVTFLIKAKNNPTLAPFENVRDIVLQKIMSQKEDYLIYEYFEKLRSNAKV 276


>gi|228951646|ref|ZP_04113749.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228808039|gb|EEM54555.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 269

 Score = 75.5 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 73/291 (25%), Gaps = 43/291 (14%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
           ++S       S    T     IT          LK +     L ++  Q++I +  K   
Sbjct: 1   MLSACGQKNGSATVATATDSTITK---DNFEKQLKDRYGKDMLYEMMAQDVITKKYK--- 54

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
                       VN    +  +  G        F           ++    Q  +   + 
Sbjct: 55  -------VSDEEVNKEVEKVKKQYG------DQFKKVLENNGLKDEEDFKNQIKFKLAMN 101

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
                     +++                      +             +   K+ +   
Sbjct: 102 EAIKKSITEKDVKD--------------------HYKPEIKASHILVSDENEAKEIKSKL 141

Query: 210 LRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGV 267
                     ++ +  +      G   Y     + P+F+    K +    +NP  +  G 
Sbjct: 142 DAGASFEELAKQESQDLLSKDKGGDLGYFNSGTMAPEFERAAYKLNVGQISNPVKSSNGY 201

Query: 268 EYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNAIIHY 316
             I + DK+DL     +K  +       +        + +++    A I  
Sbjct: 202 HVIKLTDKKDLKPYDEVKNSIRKNLEEERTADPVFSKKLLQEELKKANIKI 252


>gi|39934430|ref|NP_946706.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris CGA009]
 gi|39648279|emb|CAE26799.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris CGA009]
          Length = 347

 Score = 75.5 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/274 (11%), Positives = 89/274 (32%), Gaps = 27/274 (9%)

Query: 41  RIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
            +   +    I+  +I   IA L      GE ++ A+++                  D N
Sbjct: 76  DVIARVGSTNISTEEIRGYIAAL------GERDRAALRQ------------------DPN 111

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
            ++        N  ++ E  +   D+Q       ++     ++   +       +    +
Sbjct: 112 LLSQAVRMMLANRLVTQEIAAKKWDQQPSVAEKLERVRESAAVELYLQSVSTPPEKFPSD 171

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            ++    +  +               +P ++  ++       K  ++ + +L        
Sbjct: 172 EDLQKVYEANRAAFAMPRQFELAQIYVPLSRDADKAAEDAARKSVDDIQRKLKAPGADFS 231

Query: 221 KFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD-- 277
             AS+  D + G   +++E+ + P+ +  + + ++N  + P     G  +I + D +   
Sbjct: 232 AIASEAGDANAGALGWVVENQIRPEIRTKVMELAKNAISEPIKLDDGWHFIKVLDTKAPY 291

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
                 ++  L  Q    +       Y+ +L   
Sbjct: 292 TRTLPEVRDGLVQQIRSERSAALRRAYLAELLKQ 325


>gi|153010218|ref|YP_001371432.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ochrobactrum
           anthropi ATCC 49188]
 gi|151562106|gb|ABS15603.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ochrobactrum
           anthropi ATCC 49188]
          Length = 308

 Score = 75.5 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/280 (11%), Positives = 80/280 (28%), Gaps = 40/280 (14%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             ++NG  I + DI         +     L   A    I E L ++  E   +       
Sbjct: 48  AVSVNGVAINETDILTEAQNHPSENPGAALLAAARALAIRELLLQRARETGIV------- 100

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                   +   D   +      ++   V++ +  +       E
Sbjct: 101 -----------------------PEHEKDAEGRSETDEDALVRMVIEREVEV-PSATREE 136

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE-- 220
                +  ++      ++      I  +   +Q   + R   +  +   +          
Sbjct: 137 ALRFYENNRHRFTSAPILEASHILIAADPADSQAREKARTTASHLASSVIAAPATFASVA 196

Query: 221 -KFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTN-PYVTQKGVEYIAICDKR- 276
            +++S       G    L      P+F+    + +    T  P  ++ G   + + D+R 
Sbjct: 197 HEYSSCPSGAQGGNLGQLTRGSTVPEFERALERLTPGEITPAPIESRFGFHIVRL-DRRI 255

Query: 277 --DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             +      +   ++     +   K  ++Y+  L ++A I
Sbjct: 256 EGEELPFDYVADRIAGWLEASTWSKAVSQYIAILAADADI 295


>gi|326940021|gb|AEA15917.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 283

 Score = 75.5 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/309 (11%), Positives = 89/309 (28%), Gaps = 50/309 (16%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKINGELE 73
           +      +       +++  +   S  + T  +    +T+ ++SK    L+ Q     L 
Sbjct: 1   MKKKKIFIGTIISCVMLALSACGSSDNVVTSKVGN--VTEKELSKE---LRQQYGESTLY 55

Query: 74  KIAVQE-LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           ++ + + L+ +     E  K  +    + +   F       GL  ED             
Sbjct: 56  QMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED------------- 102

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             K+ +  +  +   +K     K      +       +                      
Sbjct: 103 ELKEKMKPEIAFEKAIKATVTEKDVKDNYKPEMKVSHILVKD------------------ 144

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK 251
                 +K  K+ +E            ++++         G+           +F+    
Sbjct: 145 ------EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAY 198

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY----VK 306
           K      ++P  T  G   I + DK++L     +K  +       +++    ++    V 
Sbjct: 199 KLDAGQVSDPVKTTYGYHIIKVTDKKELKPFDEVKEKIRKDLEQQRLQDTTGKWKQQVVN 258

Query: 307 KLRSNAIIH 315
            L  +A I 
Sbjct: 259 DLLKDADIK 267


>gi|294853303|ref|ZP_06793975.1| peptidyl-prolyl cis-trans isomerase C [Brucella sp. NVSL 07-0026]
 gi|294818958|gb|EFG35958.1| peptidyl-prolyl cis-trans isomerase C [Brucella sp. NVSL 07-0026]
          Length = 311

 Score = 75.5 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/280 (10%), Positives = 78/280 (27%), Gaps = 40/280 (14%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             ++NG  I + DI         +     L   A    + E L ++              
Sbjct: 51  AVSVNGVTIDEADILTEAQNHPAENPGAALLSAARALAVRELLLQRAR------------ 98

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                ++ +   D   +      ++   V++ +  +       E
Sbjct: 99  ------------------EIGIEPEHEKDAEGRAETDEDALVRMVIEREVDV-PSASRDE 139

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE-- 220
                +  ++      ++      I  +    +     R      +   + +        
Sbjct: 140 AQRYYENNRHRFTSAPILEASHILIAADPADQETRDAARQTATRLAAAVIAEPATFASVA 199

Query: 221 -KFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN--PYVTQKGVEYIAICDKR- 276
            +++S       G    L      P+F+  L++     T   P  ++ G   + + D+R 
Sbjct: 200 LEYSSCPSGAQGGNLGQLTRGSTVPEFERALERMIPGETTANPIESRFGYHIVRL-DRRV 258

Query: 277 --DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             +      +   ++     +   K  ++Y+  L + A I
Sbjct: 259 EGEELPFDYVADKIAGWLEASTWSKAVSQYIAILAAEAKI 298


>gi|57238208|ref|YP_178711.1| major antigenic peptide PEB4 [Campylobacter jejuni RM1221]
 gi|86149798|ref|ZP_01068027.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|86151529|ref|ZP_01069743.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|88596967|ref|ZP_01100203.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|205355446|ref|ZP_03222217.1| major antigenic peptide PEB3\cell binding factor 2 [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|218562247|ref|YP_002344026.1| major antigenic peptide PEB-cell binding factor [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|315124114|ref|YP_004066118.1| peptidyl-prolyl cis-trans isomerase [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|123141587|sp|Q0PAS1|CBF2_CAMJE RecName: Full=Cell-binding factor 2; AltName: Full=Major antigen
           peb4A; Flags: Precursor
 gi|671840|emb|CAA59175.1| cell binding factor 2 [Campylobacter jejuni subsp. jejuni 81-176]
 gi|57167012|gb|AAW35791.1| major antigenic peptide PEB4 [Campylobacter jejuni RM1221]
 gi|85839616|gb|EAQ56876.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85841158|gb|EAQ58406.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|88190656|gb|EAQ94629.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112359953|emb|CAL34742.1| major antigenic peptide PEB-cell binding factor [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|205346680|gb|EDZ33312.1| major antigenic peptide PEB3\cell binding factor 2 [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|284925857|gb|ADC28209.1| major antigenic peptide PEB-cell binding facto [Campylobacter
           jejuni subsp. jejuni IA3902]
 gi|315017836|gb|ADT65929.1| peptidyl-prolyl cis-trans isomerase [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|315058010|gb|ADT72339.1| Cell binding factor 2 precursor [Campylobacter jejuni subsp. jejuni
           S3]
 gi|315928817|gb|EFV08084.1| PPIC-type PPIASE domain protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 273

 Score = 75.5 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 91/299 (30%), Gaps = 35/299 (11%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
                  +++     +++    T+NG+ I+D ++S+  A +   +    L     + LI 
Sbjct: 4   FSLVAATLIAGVVLNVNAATVATVNGKSISDTEVSEFFAPMLRGQDFKTLPDNQKKALIQ 63

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           + + +  I +     +                                    +   A  +
Sbjct: 64  QYIMQDLILQDAKKQNLEKD---------------------------PLYTKELDRAKDA 96

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           I  +V +   +        ++ A   + K+  V+   ++     +   K       + + 
Sbjct: 97  ILVNVYQEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKG 156

Query: 203 KDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNN--TTN 259
              +E   +        ++ +         G+  +  +S +   F +     +N   TT 
Sbjct: 157 LKGKELDAKFS---ELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTT 213

Query: 260 PYVTQKGVEYIAICD--KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           P  T  G   I   +   +       +K  +       + +K   +  + L ++A + Y
Sbjct: 214 PVKTNFGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDLLNSAKVEY 272


>gi|114330677|ref|YP_746899.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           eutropha C91]
 gi|114307691|gb|ABI58934.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
           eutropha C91]
          Length = 630

 Score = 75.5 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/259 (10%), Positives = 70/259 (27%), Gaps = 14/259 (5%)

Query: 61  ALLKLQKINGELEKIAVQ----ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
           A+ + +     + +  ++     +IV       I     T           +   N    
Sbjct: 145 AMFEARLAGDLMRQQLLEGITGSVIVSKTVADRIASLSETKYEINRVTINPEQYINQAEP 204

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            E            D    + + I+ +   +   +   +    + EI     + ++   R
Sbjct: 205 DEAAIQSYYDSHRQDFTLPERVRIEYVVLSL--EELAKQEQISDEEIKKYFDEHQDEFGR 262

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK----LEKFASKI-HDVSI 231
               R     +       +         AE+   ++ +D +K     ++ +       + 
Sbjct: 263 VEERRASHILLTVPVDATEEQKAAIKAKAEQILEQVKQDPDKFPELAKELSEDPGSAKAG 322

Query: 232 GKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGG--EIALKAYL 288
           G   +     +   F++   + Q +    P  T  G   I +   +D        +K  +
Sbjct: 323 GDLGFFARGLMVKAFEDTAFEMQLDEIRGPVETPFGFHIIRLTAVKDANVAKFDEVKEGI 382

Query: 289 SAQNTPTKIEKHEAEYVKK 307
                  K      E  + 
Sbjct: 383 RQTLQRQKAADRFGELSED 401



 Score = 55.8 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/306 (8%), Positives = 85/306 (27%), Gaps = 25/306 (8%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
           F +    I  +  +  L+ F    + SY+    +S    +++GE I+  +  + +   + 
Sbjct: 4   FVNQKKTIVQIVLFIALLPFLFWGLESYQGMGSASD-VASVDGEEISRQEYEQALRNQQE 62

Query: 66  QKIN-------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
              N              ++    ++ LI + L + E  + G+    + +       A  
Sbjct: 63  NLRNMLGENFDASLLDSPQMRMAVLENLIQQKLLRHEAGRVGLAVLDSRLTAEIQNIALF 122

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
                  +  + +           + A   +  D+++   +       +       ++ +
Sbjct: 123 HEDDKFSYERYRELLQRQGMSPAMFEAR--LAGDLMRQQLLEGITGSVIVSKTVADRIAS 180

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
           ++  +Y I  V  +      Q +          +  R           ++     +    
Sbjct: 181 LSETKYEINRVTINPEQYINQAEPDEAAIQSYYDSHRQDFTLPERVRIEYVVLSLEE--- 237

Query: 233 KAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN 292
                 +  +  +          +       ++    +       +      KA + A+ 
Sbjct: 238 ---LAKQEQISDEEIKKYFDEHQDEFGRVEERRASHILLTV---PVDATEEQKAAIKAKA 291

Query: 293 TPTKIE 298
                +
Sbjct: 292 EQILEQ 297


>gi|228996233|ref|ZP_04155879.1| Foldase protein prsA 1 [Bacillus mycoides Rock3-17]
 gi|229003892|ref|ZP_04161699.1| Foldase protein prsA 1 [Bacillus mycoides Rock1-4]
 gi|228757344|gb|EEM06582.1| Foldase protein prsA 1 [Bacillus mycoides Rock1-4]
 gi|228763501|gb|EEM12402.1| Foldase protein prsA 1 [Bacillus mycoides Rock3-17]
          Length = 281

 Score = 75.5 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/299 (11%), Positives = 89/299 (29%), Gaps = 45/299 (15%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
            ++      +++  +   S +I T+  G+ I+  D+ K++             K  ++ +
Sbjct: 4   AMLALAATSLIALSACGSSDKIVTSKAGD-ISKEDLYKQMK--------DRAGKQILRGM 54

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           ++E +  +  +      D                   + F + L +QG   + FK+ +  
Sbjct: 55  VLEKVLVKNHKVDDKEVDKKYD--------EYKKQLGDQFDAALKQQGFTKDSFKESVRA 106

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           +      +++    K      +       +                            + 
Sbjct: 107 ELAMDKAIESSITDKELKENYKPEIKASHILVKD------------------------EA 142

Query: 201 RIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT 258
             K  +E   +        ++++         G   Y     +  +F +   K  ++  +
Sbjct: 143 TAKKVKEELGQGKSFEELAKQYSEDKGSAEKGGDLGYFGPGKMVKEFSDAAYKLKKDEVS 202

Query: 259 NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRSNAIIH 315
            P  +Q G   I + D ++       KA +       K +  +  AE   K    A + 
Sbjct: 203 EPVKSQFGYHIIKVTDIKEQKSFEEEKANIKKGLVEKKKQDPQFMAELQDKELKKADVK 261


>gi|262374583|ref|ZP_06067857.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter junii SH205]
 gi|262310579|gb|EEY91669.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter junii SH205]
          Length = 361

 Score = 75.5 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/191 (9%), Positives = 59/191 (30%), Gaps = 8/191 (4%)

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL-IRTVLFSIPDNK 191
                   +     ++  +      +        +Q +++      + +R +L +     
Sbjct: 157 ESAWAEDEEKAISALIDKNVKATIPDAATCERYYEQNIEDFITDPVMSVRHILLACLPED 216

Query: 192 LQNQGFVQKRIKDAEESRLR----LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
            + +  ++K   D  E                 + ++       G    + +    P+F+
Sbjct: 217 GEERLKLKKTAYDYIEQIQSDSNPAAAFIELARQHSACPSKEQGGDLGVISKGQTVPEFE 276

Query: 248 NL-LKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEY 304
            +  K       +P  ++ G   + + +K+         + A +S + +     +   +Y
Sbjct: 277 KVLFKLETGLAPSPIESRYGFHVVDVLNKQQGIQMTYEQVSAAISNKLSQKAFHQSLCDY 336

Query: 305 VKKLRSNAIIH 315
           +  L  +A I 
Sbjct: 337 LFTLADDAEIE 347


>gi|30261164|ref|NP_843541.1| peptidylprolyl isomerase [Bacillus anthracis str. Ames]
 gi|47526319|ref|YP_017668.1| peptidylprolyl isomerase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183995|ref|YP_027247.1| peptidylprolyl isomerase [Bacillus anthracis str. Sterne]
 gi|65318433|ref|ZP_00391392.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Bacillus
           anthracis str. A2012]
 gi|165871813|ref|ZP_02216456.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0488]
 gi|167635351|ref|ZP_02393665.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0442]
 gi|167640186|ref|ZP_02398452.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0193]
 gi|170688111|ref|ZP_02879323.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0465]
 gi|170707650|ref|ZP_02898102.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0389]
 gi|177654152|ref|ZP_02936125.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0174]
 gi|190566666|ref|ZP_03019583.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis Tsiankovskii-I]
 gi|196036478|ref|ZP_03103874.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus W]
 gi|196037489|ref|ZP_03104800.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus NVH0597-99]
 gi|218902237|ref|YP_002450071.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus AH820]
 gi|227816105|ref|YP_002816114.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. CDC 684]
 gi|228926187|ref|ZP_04089262.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228932442|ref|ZP_04095323.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229120660|ref|ZP_04249903.1| Foldase protein prsA 1 [Bacillus cereus 95/8201]
 gi|229600239|ref|YP_002865593.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0248]
 gi|254682780|ref|ZP_05146641.1| peptidylprolyl isomerase [Bacillus anthracis str. CNEVA-9066]
 gi|254725568|ref|ZP_05187350.1| peptidylprolyl isomerase [Bacillus anthracis str. A1055]
 gi|254734195|ref|ZP_05191908.1| peptidylprolyl isomerase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254740159|ref|ZP_05197851.1| peptidylprolyl isomerase [Bacillus anthracis str. Kruger B]
 gi|254753500|ref|ZP_05205536.1| peptidylprolyl isomerase [Bacillus anthracis str. Vollum]
 gi|254758597|ref|ZP_05210624.1| peptidylprolyl isomerase [Bacillus anthracis str. Australia 94]
 gi|46396834|sp|Q81U45|PRSA1_BACAN RecName: Full=Foldase protein prsA 1; Flags: Precursor
 gi|30254778|gb|AAP25027.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. Ames]
 gi|47501467|gb|AAT30143.1| peptidylprolyl isomerase PrsA [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177922|gb|AAT53298.1| protein export protein prsA [Bacillus anthracis str. Sterne]
 gi|164712390|gb|EDR17924.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0488]
 gi|167511787|gb|EDR87167.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0193]
 gi|167529179|gb|EDR91932.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0442]
 gi|170127425|gb|EDS96300.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0389]
 gi|170668006|gb|EDT18757.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0465]
 gi|172080859|gb|EDT65939.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0174]
 gi|190562218|gb|EDV16186.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis Tsiankovskii-I]
 gi|195990952|gb|EDX54924.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus W]
 gi|196031731|gb|EDX70327.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus NVH0597-99]
 gi|218537167|gb|ACK89565.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus AH820]
 gi|227006959|gb|ACP16702.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. CDC 684]
 gi|228662665|gb|EEL18262.1| Foldase protein prsA 1 [Bacillus cereus 95/8201]
 gi|228827132|gb|EEM72885.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228833440|gb|EEM79002.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229264647|gb|ACQ46284.1| peptidylprolyl isomerase PrsA1 [Bacillus anthracis str. A0248]
          Length = 287

 Score = 75.5 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/305 (11%), Positives = 89/305 (29%), Gaps = 46/305 (15%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S +I T+  G+ IT  +  +++          +  K 
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKIVTSKAGD-ITKDEFYEQMKT--------QAGKQ 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +++E +  +  +      D                   + F + L +QGI +   K
Sbjct: 52  VLNNMVMEKVLIKNYKVEDKEVDKKYD--------EMKKQYGDQFDTLLKQQGIKEETLK 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +  Q      ++     K      +       +                         
Sbjct: 104 TGVRAQLAQEKAIEKTITDKELKDNYKPEIKASHILVKD--------------------- 142

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              +   K  +E   +        ++++         G   +     +  +F++   K  
Sbjct: 143 ---EATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGAGKMVKEFEDAAYKLK 199

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
           ++  + P  +Q G   I + D ++        KA +  +    K +  +   + + K   
Sbjct: 200 KDEVSEPVKSQFGYHIIKVTDIKEPEKSFEQSKADIKKELVAKKSQDGEFMNDLMMKEIK 259

Query: 311 NAIIH 315
            A + 
Sbjct: 260 KADVK 264


>gi|251794109|ref|YP_003008840.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           JDR-2]
 gi|247541735|gb|ACS98753.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           JDR-2]
          Length = 324

 Score = 75.5 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 80/291 (27%), Gaps = 34/291 (11%)

Query: 31  VSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEI 90
            S    A S  I  T+ G  IT  D++++   LK Q  +  L  + V + I    + Q++
Sbjct: 53  PSDSDHAYSDGIAATVGGFPITAEDLAEQ---LKRQYGDNVLRTMMVHKAIDLEAEAQQL 109

Query: 91  EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
             S    +    +              +    F +         K  +     +  +++ 
Sbjct: 110 SLSSEEEERELTS---------MMDGYDSEEVFYEVMKDQLGMTKSDVEEDVKYRLLLEK 160

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
             +L     E+EI                +                  +K   D  +   
Sbjct: 161 IAILTVNLSEVEIENYIAAHPEQFADRLRLHVQWIVT---------DTEKEADDVLDKLT 211

Query: 211 RLPKDCNKLEKFASKIH-DVSIGKAQYLLESD---LHPQFQNLLKKSQNNTTNPYVTQKG 266
                     +++   +   + G    +   D        +   +     +T P    +G
Sbjct: 212 AGDSFEQLALEYSKDANTSDAGGDLGLIDSDDPFYDAEMMEEASRLQTGESTGPIKVPEG 271

Query: 267 VEYIAICDKRDLGG------EIALKAYL---SAQNTPTKIEKHEAEYVKKL 308
              I + +++   G          +  L    A+      +    +Y  ++
Sbjct: 272 YAVIRVLERQKTEGLSGHVLYDTARKELALSKAKPLNEIEDGLLEKYNAEI 322


>gi|313885295|ref|ZP_07819046.1| putative peptidylprolyl isomerase PrsA1 [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619401|gb|EFR30839.1| putative peptidylprolyl isomerase PrsA1 [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 316

 Score = 75.1 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/313 (12%), Positives = 86/313 (27%), Gaps = 38/313 (12%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWA----MSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +K      + + F  + + S  + A        +  TI    IT  D    +  L     
Sbjct: 1   MKKALLKTIGLSFTSLALASSLAGALPVMAQDDVIATIGDTKITKEDFYNEMKSL---AG 57

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
              L  + ++ ++ + +K  +  K     ++        +   N  L+     S  +   
Sbjct: 58  KTTLRSMILENVLKQNVKDADALKKSADEEAQEQLDKVGEDQFNAYLNQMQLGSIDE--- 114

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                       Q    ++ +     K    +  I     +                  P
Sbjct: 115 ---------FKYQLYIRNMFQEVVEGKMDLSDEAIKKFYDESYE--------------TP 151

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQ 247
               Q     +   KD         +     ++ +       + G         +  +F+
Sbjct: 152 MEAQQILVKTEDEAKDVINRLNNGEEFDALAKELSIDEATAANGGLLSPFTSGQMVQEFE 211

Query: 248 NLLKKSQNN--TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY- 304
           + +K S+N   T  P  +Q G   I   +         +K  +  Q   +K       Y 
Sbjct: 212 DAVKASENGSVTQEPVKSQYGFHVIKTINNGTKQAFEDVKDDVVNQYKQSKFSDSNFSYG 271

Query: 305 -VKKLRSNAIIHY 316
            + +L  +A +  
Sbjct: 272 VIGQLIKDAKVDI 284


>gi|153007316|ref|YP_001381641.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030889|gb|ABS28657.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 339

 Score = 75.1 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/309 (12%), Positives = 84/309 (27%), Gaps = 35/309 (11%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA----LLKLQKINGEL 72
                 +    V     K    S  +    NG  IT  +   R+      ++ +    E 
Sbjct: 4   RLIVTGLCALAVACGPKKDEKKSGPVVAQGNGVTITADEFKARLDEQSPFIRARYTTLER 63

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +K  +  L+   +  +E EK G+  D +          +                   + 
Sbjct: 64  KKEFLDNLVRFEVLAREAEKRGLADDPDVQMTLKKIMVQKLVQKNFQDLEGAKNLPEPEL 123

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                                        +  ++  + K + +   +      S    K 
Sbjct: 124 QKYY------------------------DDHKSDYFRPKRVRLAAVIWNAPAGSPERAKK 159

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL--- 249
             Q         AEE +  L  +    +         + G  Q+    +L   F      
Sbjct: 160 LAQAKAALAKIKAEEKKNALAFNQAVAQYSEDAATKSAGGDLQFKSHEELSQAFSKELAD 219

Query: 250 --LKKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYV 305
                    T+    T KG+  + +  +++        +K  ++ +    +  K   E++
Sbjct: 220 AAFALQAGQTSGVIETPKGLYLLKLTAQQEELNRSFDQVKTQIANKLYRERKTKEFDEWL 279

Query: 306 KKLRSNAII 314
           K+L+  A I
Sbjct: 280 KRLKDEAKI 288


>gi|306840866|ref|ZP_07473611.1| Chaperone surA precursor [Brucella sp. BO2]
 gi|306289137|gb|EFM60393.1| Chaperone surA precursor [Brucella sp. BO2]
          Length = 311

 Score = 75.1 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/280 (10%), Positives = 78/280 (27%), Gaps = 40/280 (14%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             ++NG  I + DI         +     L   A    + E L ++              
Sbjct: 51  AVSVNGVTIDEADILTEAQNHPAENPGAALLSAARALAVRELLLQRAR------------ 98

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                ++ +   D   +      ++   V++ +  +       E
Sbjct: 99  ------------------EIGIEPEHEKDAEGRAETDEDALVRMVIEREVDV-PSASRDE 139

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE-- 220
                +  ++      ++      I  +    +     R      +   + +        
Sbjct: 140 AQRYYENNRHRFTSAPILEASHILIAADPADQEARDAARQTATRLAAAVIAEPATFASVA 199

Query: 221 -KFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN--PYVTQKGVEYIAICDKR- 276
            +++S       G    L      P+F+  L++     T   P  ++ G   + + D+R 
Sbjct: 200 LEYSSCPSGAQGGNLGQLTRGSTVPEFERALERMTPGETTANPIESRFGFHIVRL-DRRV 258

Query: 277 --DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             +      +   ++     +   K  ++Y+  L + A I
Sbjct: 259 EGEELPFDYVADKIAGWLEASTWSKAVSQYIAILAAEAEI 298


>gi|258593862|emb|CBE70203.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 337

 Score = 75.1 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/337 (13%), Positives = 99/337 (29%), Gaps = 32/337 (9%)

Query: 2   TSKVF---TSLSDFIKLLTTYFVLIIFCIVPI--VSYKSWAMSSRIRTTINGEVITDGDI 56
             ++     +LS  + L+   F+   F +      S     + + I   + GE I   + 
Sbjct: 6   LKRIRGYTKALSVTLWLVIFAFIGTTFLVWGFRSTSGTGGGVVNPIGA-VEGEQIPYAEY 64

Query: 57  SKRI-------------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            +                  +       L+   V+ LI   L   E  + G+    + + 
Sbjct: 65  QQAYQRQYQQYQEKLGDKFDEKILEQLNLKGQVVEGLIGRHLLLHEANRLGLVISPDELV 124

Query: 104 YFFVQHARNTGLSAEDFSSFLD--KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
                    +  +      +L   +         +    + +    V+         +  
Sbjct: 125 AEITAIPAFSDATGFKRDKYLRTLQSARLTPERFEESLREDLLLRKVEEWVKGGVHLIPD 184

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           E     +  +     EY++ + L       +QN   + K  K  EE            + 
Sbjct: 185 ETWEAFRFNRASVKAEYVMFSDL-KTQQAAVQNVAGLAKSNKPWEEIVRASGLKPVTSDF 243

Query: 222 FASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG- 280
           F+       I   +   E+ L           +   +     +K    + + D++D    
Sbjct: 244 FSWDRSLPHIPDQERFKEAALV--------MERGAVSPIIQGEKASYLLRVIDRKDPDAA 295

Query: 281 -EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                KA  S      K E+  A++++++R+ A +  
Sbjct: 296 EFEREKAQFSRGLLQRKREQVFADWIRQVRARAKVKI 332


>gi|229016342|ref|ZP_04173287.1| Foldase protein prsA 1 [Bacillus cereus AH1273]
 gi|229022583|ref|ZP_04179110.1| Foldase protein prsA 1 [Bacillus cereus AH1272]
 gi|228738710|gb|EEL89179.1| Foldase protein prsA 1 [Bacillus cereus AH1272]
 gi|228744934|gb|EEL94991.1| Foldase protein prsA 1 [Bacillus cereus AH1273]
          Length = 286

 Score = 75.1 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/305 (12%), Positives = 93/305 (30%), Gaps = 42/305 (13%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +      L    ++ + +  + + S +I T+  G+ IT  +   ++          +  K
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSSDKIVTSKAGD-ITKEEFYNQMKT--------QAGK 51

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             +  +++E +  +  +      D                   + F + L +QG+ +   
Sbjct: 52  QVLNNMVMEKVLIKNYKVDDKEVDKKYD--------EMKKQVGDQFDTLLKQQGLKEETV 103

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
           K  +         ++     K    + E    + K  +I V++                 
Sbjct: 104 KNGVRASLAQEQAIEKSITDKDLKAKYEDYKQEIKASHILVKD----------------- 146

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKK 252
               ++  K  +E   +        +K++         G   +     +  +F +   K 
Sbjct: 147 ----EETAKKVKEELAQGKSFEELAKKYSEDPGSKEKGGDLGFFGPDKMVKEFDEAARKL 202

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
            ++  + P  TQ G   I + D          KA +  +    K +  +   + + K   
Sbjct: 203 KKDEVSEPVKTQHGYHIIKVTDTHADKTFDQAKADIKKEVVQEKTQDAQFMNDLMMKEIK 262

Query: 311 NAIIH 315
            A + 
Sbjct: 263 KADVK 267


>gi|171058521|ref|YP_001790870.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii
           SP-6]
 gi|170775966|gb|ACB34105.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii
           SP-6]
          Length = 275

 Score = 75.1 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 77/280 (27%), Gaps = 49/280 (17%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKING---ELEKIAVQELIVETLKKQEIEKSGITFDS 99
              +NG+ +        +  +  Q       ELE+    EL++  +  QE EK G+  +S
Sbjct: 34  IAIVNGKGVPTARFDSFMTQVTKQGNQPRTAELERQVKDELVLREIFVQEAEKRGLQKNS 93

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
                                               +      +  ++            
Sbjct: 94  EYRTQ------------------------------MEIARQSLLIRELFNEYQKKNPVTD 123

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
                   +       +EY  + +L    D        ++              K     
Sbjct: 124 AEIKAEYDKVKSGAGEKEYHAKHILVEKEDEAKALIAELK-----------GGAKFDELA 172

Query: 220 EKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNP-YVTQKGVEYIAICDKR 276
           +K +       + G   +   ++  P+F   + K  +   T     +Q G   I + D R
Sbjct: 173 KKASKDPGSAQNGGDLDWAAPANYVPEFSQAMVKLEKGKYTETAVKSQFGYHIILLDDVR 232

Query: 277 DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +          + AQ      ++   +Y ++LRS A   Y
Sbjct: 233 EAQF--PPLEEVKAQLEQRLAQQKMGKYREELRSKAKTDY 270


>gi|124266954|ref|YP_001020958.1| putative exported isomerase [Methylibium petroleiphilum PM1]
 gi|124259729|gb|ABM94723.1| putative exported isomerase [Methylibium petroleiphilum PM1]
          Length = 272

 Score = 75.1 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 71/284 (25%), Gaps = 54/284 (19%)

Query: 43  RTTINGEVITDG-------DISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGI 95
              +NG+ +           ++K+      Q            E+++  +  Q  EK G+
Sbjct: 30  IAIVNGKPVPKARADALLLQVTKQAQSQGQQLPPETER-QVKDEVVLREIFTQAAEKRGV 88

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
                                                   +      +  ++  +     
Sbjct: 89  AATPEYKAQ------------------------------MELARQSILIRELFADFQKKN 118

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
                       +       +EY +R +L    D        +Q                
Sbjct: 119 PVTDAEVQAEYDKYKAQAGDKEYRVRHILVETEDEAKALIAQIQ-----------GGASF 167

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAI 272
               +K +       + G   +       P+F N + K  +   T  P  +Q G   + +
Sbjct: 168 EETAKKSSKDPGSAPNGGDLDWAAPGSFVPEFSNAMVKLEKGKMTEAPIKSQYGFHILKL 227

Query: 273 CDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            D RD        A +  Q      ++    +  +L+S A   Y
Sbjct: 228 EDVRDAQ--FPPLAEVKPQIEQRLSQQKVGAFRDELKSKAKTDY 269


>gi|114320159|ref|YP_741842.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114226553|gb|ABI56352.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 260

 Score = 75.1 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/276 (9%), Positives = 71/276 (25%), Gaps = 39/276 (14%)

Query: 46  INGEVITDGDISKRIALLKL--QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           +NG  IT   I+   A  K          E+ A+   + E L+++ ++      + ++ +
Sbjct: 5   VNGVEITHHAINIESAHHKRPDLDPREAQEQAALALTLRELLRQRALQLDLEVPEDDSDD 64

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
                          D     +                                      
Sbjct: 65  QALDAVIDRLIELEVDIPQADEATCRRWFEQNPDH------------------------- 99

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK-RIKDAEESRLRLPKDCNKLEKF 222
                     T     +R +L +     L+ +   ++       + +             
Sbjct: 100 --------FRTPDLAEVRHILVAGHPEDLEEREQARQTAEGLIRQLQADPAAFPALATAH 151

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLG-- 279
           +        G    +   +  P+F++ + +        P  T+ G   + +  +      
Sbjct: 152 SRCPSSEQGGLLGQVSRGETVPEFEDAVLRLPVGLAPQPIKTRYGFHVVEVLQRIPGTAL 211

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
              A+   ++        ++   +Y++ L   A I 
Sbjct: 212 PFEAVHERIAEYLEAVSRQRALNQYLRLLVGEADIK 247


>gi|289207782|ref|YP_003459848.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
           K90mix]
 gi|288943413|gb|ADC71112.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
           K90mix]
          Length = 633

 Score = 75.1 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/264 (9%), Positives = 69/264 (26%), Gaps = 17/264 (6%)

Query: 53  DGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
           + DI + I L +LQ         A   L+ +  + +   +                    
Sbjct: 150 ERDIGRSIILSQLQGGIQATGFPA-DALVDDFSRLRNQTRVASW--------RIFPVDDF 200

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
                 D  +         + F     ++  +  +            E ++  + +  ++
Sbjct: 201 DQPDVVDDKAIEAYYEANQDDFTTEERVRIAYLQLDPEALEDAVDVSEDDVRQHYEVNRS 260

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSI 231
                 L       I           + +I +  +            E ++   +     
Sbjct: 261 RYEEPELREVRQIRIQ----DTGEEGEAKINELRDRLDDGEDFAELAEAYSEDSLSADRG 316

Query: 232 GKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYL 288
           G    +   DL    + ++    +   + P  T +G   + +   ++        ++  +
Sbjct: 317 GSLGEIARGDLDRTLETIIFTLPEGLISRPVRTDRGWFILEVTSIQEARPQPFEDVRDEV 376

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNA 312
                    E+ + + +  L   A
Sbjct: 377 ERDLRDRSAEQMQIDALDDLMGQA 400



 Score = 57.0 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/232 (8%), Positives = 54/232 (23%), Gaps = 14/232 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +    S ++  +    + I F +  +  Y   +    +   +NG  I   D+    
Sbjct: 1   MLQAIRDRASGWLAYVIIGLITIPFAVWGLGEYFGGSGPL-VAAEVNGTDIQVRDVHNEA 59

Query: 61  ALLKLQK-------------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
              + Q                  +   A++ LI + L +Q  + +G     +++     
Sbjct: 60  RAQRDQMARMFGGQIPDDLLDEEGIRMQALETLIRQELLRQAADSAGFKAAGDSILREIR 119

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
                          +             +         + +    ++      +   + 
Sbjct: 120 GMPVFQEGGQFSRERYAQLLNAQRLSPSDFERDIGRSIILSQLQGGIQATGFPADALVDD 179

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
                   R    R       D          +   +A +      +     
Sbjct: 180 FSRLRNQTRVASWRIFPVDDFDQPDVVDDKAIEAYYEANQDDFTTEERVRIA 231


>gi|89901176|ref|YP_523647.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax
           ferrireducens T118]
 gi|89345913|gb|ABD70116.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax
           ferrireducens T118]
          Length = 261

 Score = 75.1 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 75/278 (26%), Gaps = 48/278 (17%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKIN--GELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG+ +    +      +         E++    +E+I   +  QE +K G+    +
Sbjct: 27  VAIVNGKAVPTARMDALAQQVARSGRPITPEMQGQLKEEVIAREIFMQEAKKQGLDTTED 86

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                     +  ++  N          
Sbjct: 87  FRTQ------------------------------MDLARQTLLIRELFANYQKTSPVTDA 116

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
                  +     + +EY  R +L    D        ++K             K     +
Sbjct: 117 DIKAEYDKFAAANSGKEYRARHILVEKEDQAKAIIAQLKK-----------GGKFDEIAK 165

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN--PYVTQKGVEYIAICDKRD 277
           K +       + G   +   S+  P+F   L K     T   P  +Q G   I + D RD
Sbjct: 166 KSSKDPGSGANGGDLDWANPSNYVPEFSQALIKLTKGQTTETPVKSQFGYHIIRLDDVRD 225

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                     +  Q      ++   +Y ++LR+ A I 
Sbjct: 226 AQL--PKFDDVKPQIAQQLQQQKMTKYQEELRAKAKIE 261


>gi|294666558|ref|ZP_06731799.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603702|gb|EFF47112.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 656

 Score = 75.1 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/249 (8%), Positives = 68/249 (27%), Gaps = 5/249 (2%)

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
           AL++       + +   +        + E     +    +         A +T   ++  
Sbjct: 173 ALVRDSLQQSVIPQAVAESGFATKS-EFERLLKLMGETRDVELAMLPPPAADTAPVSDAQ 231

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
                     D    + + I+ +  +              +      +K + +   + L 
Sbjct: 232 IKQWYDGHTQDFRQPETVTIEYVELNAATMPPATAADEATLRKRYEDEKARFVEPEQRLA 291

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
             +L S   +    +    K  K A E++          +  +       + G   ++ +
Sbjct: 292 SHILISAGPDAAAQKAAEAKAAKLAAEAKQTGTDFAALAKANSQDPGSKDAGGDLGWVEK 351

Query: 240 SDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE 298
             +   F++            P  ++ G   I + + +   G+      +  Q    +++
Sbjct: 352 GTMVKPFEDALFSMKAGEVVGPIKSEFGYHVIQLREVKGGQGKS--FEQVRDQLAAEQLK 409

Query: 299 KHEAEYVKK 307
               +    
Sbjct: 410 ADADKAFAD 418



 Score = 50.4 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 57/236 (24%), Gaps = 34/236 (14%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTI-------------- 46
           M  K+    S +I       ++I F  V   SY     ++     +              
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFLFVIDNSYLGGIGANN-VAKVQAPPTWWKSAPSWW 59

Query: 47  ------NGEVITDGDISKRIALLKLQKINGELEK-------------IAVQELIVETLKK 87
                     I+  D   R    ++Q+   + EK               + +L+ E + +
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQARMQERQRQGEKFDPRTFESRENKLQVLDQLVDEQVVR 119

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
              E +GI     TV  +                 +      G            +   +
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQVDGKFSPDQYRAALAQGTPPRTPAQFDALVRDSL 179

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
            ++              +  +++  +      +   +   P          Q +  
Sbjct: 180 QQSVIPQAVAESGFATKSEFERLLKLMGETRDVELAMLPPPAADTAPVSDAQIKQW 235


>gi|302872296|ref|YP_003840932.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575155|gb|ADL42946.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 331

 Score = 75.1 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/299 (9%), Positives = 89/299 (29%), Gaps = 23/299 (7%)

Query: 41  RIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL----------------IVET 84
           ++   +NGE +T  +   R   LK   I        + ++                I+  
Sbjct: 27  KVVLEVNGEQVTKREYKIRFNTLKENAIQFSSRADILDQVFNGKTYRELLKDELFTILTE 86

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
                 +               ++       + E+  S+ ++        + +       
Sbjct: 87  ELLCLQDARRRNIYLTKQEEEEIKKYIEELKANEEMRSYFNQYLRKIGSDENHFYRDLHK 146

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
             ++   +        +              +   I+ +   +     +     ++    
Sbjct: 147 TRIINKLYSSITSKTTVSDSEIVNYYNTNKNQFKKIKIMDIFLKVENEEEDVQKREIANK 206

Query: 205 AEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYLLESDLHPQF-----QNLLKKSQNNTT 258
                 +       ++K+       ++ G   Y  + +   ++     + + K +    +
Sbjct: 207 IVSELKKGEDFEKLVKKYTEDESVGITKGIIDYFRKGEKEAEYGSVFEEEVFKLAVGQVS 266

Query: 259 NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           N   T KG   + + D++ +  +  +K  + ++    K ++    Y++ L+ ++ I+ Y
Sbjct: 267 NIIKTIKGYHIVKVLDEKYMPLDE-VKGEIQSKLMKQKKDQVFRLYIENLKKSSKINVY 324


>gi|220919567|ref|YP_002494871.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219957421|gb|ACL67805.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 354

 Score = 75.1 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/314 (12%), Positives = 95/314 (30%), Gaps = 33/314 (10%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA----LLKLQK 67
            ++ +    ++ +         K    S     T NG  IT G++  R+      ++ + 
Sbjct: 1   MLRRIVLLGLVALAATACQPGSKDSKKSGPAVATGNGFTITAGELKARLDEQSPFIRARY 60

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
              E +K  +  LI   +  +E E+ G+  D +          +                
Sbjct: 61  STLERKKEFLDNLIRFEVLAREAERQGLANDPDVQLTLKKVMVQKL-------------- 106

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
              +       A +++    ++  +       E +    + +   +    +         
Sbjct: 107 VQKNFQDANGAAAEALPEADLQKYY------DEHKAEYYRPRRVRLAAIVWNAPAGSPER 160

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
                  +  + K   + +++ L   +  N+  + A  +   + G   +    DL   + 
Sbjct: 161 AAKVALAKKALAKLKAEEKKNTLAFAQLVNEFSEDA--VSKATAGDLGFKSREDLEKAYS 218

Query: 248 NLL-----KKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKH 300
                         T+    T   V  +    ++D        +KA +  +    K  K 
Sbjct: 219 KEFADVTFNLQPGATSGVLETANAVYLVKGTGEQDELNRTFEQVKAQIQTKLYREKKTKE 278

Query: 301 EAEYVKKLRSNAII 314
              ++KKLR +A +
Sbjct: 279 FDGWLKKLRDDAKV 292


>gi|291165957|gb|EFE28004.1| PPIC-type PPIASE domain protein [Filifactor alocis ATCC 35896]
          Length = 247

 Score = 75.1 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/283 (10%), Positives = 75/283 (26%), Gaps = 47/283 (16%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQ----KINGELEKIAVQELIVETLKKQEIEKSGI 95
           S +   +NG  IT  +       L  +          E   + E+I + +   + ++  +
Sbjct: 2   SEVLAKVNGIDITREEFEIMKRSLGKEILKKLQGDNAEDGLLDEMINQKMIYFDAKEKKL 61

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
                                                   + L    +    V     ++
Sbjct: 62  DETEEFQKQL------------------------------EILKENLLIQFGVNKIVEVE 91

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
               E +    ++          +  + +              +   ++      +    
Sbjct: 92  PITDEEKRAFYEEHKNVFVQSGEVEASHILVDN----------EALAREIYIKIDKGIPF 141

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICD 274
               EK +S     S G         + P+F+++     +N  + P  TQ G   I +  
Sbjct: 142 EELAEKHSSCPSKSSGGSLGKFGRGQMVPEFESVAFALEENEVSVPVKTQFGYHVIRVDK 201

Query: 275 K--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           K  +       ++  + A     K  +   + +++L    ++ 
Sbjct: 202 KYPQQQIAFDLIEPEIEATLLEKKQHEQYVKTIEELHKKYVVQ 244


>gi|321313742|ref|YP_004206029.1| hypothetical protein BSn5_11930 [Bacillus subtilis BSn5]
 gi|320020016|gb|ADV95002.1| hypothetical protein BSn5_11930 [Bacillus subtilis BSn5]
          Length = 297

 Score = 75.1 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/319 (11%), Positives = 95/319 (29%), Gaps = 36/319 (11%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIV-SYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
             S + +  +L    V  I     +  S    + S     TI G+ +T  +  K +    
Sbjct: 1   MKSRTIWTIILGALLVCCIAVAYTLTKSQAGASSSGESIATIGGKSVTREEWLKEM---- 56

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                 +  K  ++++I   + +Q  +K+ +    + V+  F+          ED     
Sbjct: 57  ----EDQYGKSTLEDMINVRVVEQLAKKNNLKISKSEVDREFLLIKAVNNSFYEDE---- 108

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
                  +  ++    Q  +  +++            E+ +   K K +   +   R   
Sbjct: 109 -------HTTEKEWKDQIRYNILLEELLTRDIDISNKELESFYHKNKELYQFDDSYRIRH 161

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL-- 242
             + D +   +   +         +     +    E+   +      G   ++ E+    
Sbjct: 162 IVVKDEEEAREVLKE--------LKGGSSFEAVAAERSTDRYTSPYGGDLGFVTEASDNI 213

Query: 243 -HPQFQNLLKKSQNNTT-NPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIE 298
                +      ++  +  P     G   I + +K          +K  +  Q    ++ 
Sbjct: 214 PSAYIEEAKTLKEDEWSQEPIKVSNGYAIIQLKEKLKARTFSFDEVKDQIRRQIAMDQLG 273

Query: 299 KHEAEYVKKLRSNAIIHYY 317
                 VK L   A + ++
Sbjct: 274 DKAT--VKTLWKEADVSWF 290


>gi|218897287|ref|YP_002445698.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus G9842]
 gi|228900906|ref|ZP_04065121.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 4222]
 gi|218542209|gb|ACK94603.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus G9842]
 gi|228858832|gb|EEN03277.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 4222]
          Length = 293

 Score = 75.1 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/309 (12%), Positives = 89/309 (28%), Gaps = 50/309 (16%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKINGELE 73
           L      +       +++  +   S  + T  +    +T+ ++SK    L+ Q     L 
Sbjct: 11  LKKKKIFIGTIISCLMLALSACGSSDNVVTSKVGN--VTEKELSKE---LRQQYGESTLY 65

Query: 74  KIAVQE-LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           ++ + + L+ +     E  K  +    + +   F       GL  ED             
Sbjct: 66  QMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED------------- 112

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             K+ +  +  +   +K     K      +       +                      
Sbjct: 113 ELKEKMKPEIAFEKAIKATVTEKDVKDNYKPEMKVSHILVKD------------------ 154

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK 251
                 +K  K+ +E            ++++         G+           +F+    
Sbjct: 155 ------EKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAY 208

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY----VK 306
           K      ++P  T  G   I + DK++L     +K  +       ++E    ++    V 
Sbjct: 209 KLDAGQVSDPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDLEQQRLEDTTGKWKQQVVN 268

Query: 307 KLRSNAIIH 315
            L  +A I 
Sbjct: 269 DLLKDANIK 277


>gi|158423053|ref|YP_001524345.1| putative peptidyl-prolyl cis-trans isomerase [Azorhizobium
           caulinodans ORS 571]
 gi|158329942|dbj|BAF87427.1| putative peptidyl-prolyl cis-trans isomerase [Azorhizobium
           caulinodans ORS 571]
          Length = 304

 Score = 75.1 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 81/288 (28%), Gaps = 46/288 (15%)

Query: 40  SRIR---TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGIT 96
            R+     ++NG  I+   I+  +     +          +  L+V  L  QE  + G++
Sbjct: 38  ERVVMSPVSVNGVAISRKAIAAEVQNAPAKTPAEGWFNATL-ALVVRELLLQEAHRLGLS 96

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
            D                                          ++    +++     + 
Sbjct: 97  ADPRLEADG---------------------------------RRETEEEALIRALLAQEV 123

Query: 157 GNLEMEIPANKQKMKNI-----TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
              E +  A ++   N      +   +    +L +            ++R +       R
Sbjct: 124 RTPEADEAALRRFYDNNRRRFLSAPLWEAEHILCAARREDAVAFPAARERAQTLAAVLAR 183

Query: 212 LPK-DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEY 269
            P+         +        G    +   D  P+F+  LK  +    + P  T+ GV  
Sbjct: 184 APERFAELARAQSDCPSAGVGGSLGQIGPGDTTPEFEAALKALTPGVISEPVETRYGVHL 243

Query: 270 IAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           I +    D       A++  ++A           A+YV  L   A I 
Sbjct: 244 IRVNRHVDGRTLPFEAVRDQIAAYLADHVTRAAHAQYVALLIGRADIQ 291


>gi|58617519|ref|YP_196718.1| hypothetical protein ERGA_CDS_07920 [Ehrlichia ruminantium str.
           Gardel]
 gi|58417131|emb|CAI28244.1| Hypothetical protein ERGA_CDS_07920 [Ehrlichia ruminantium str.
           Gardel]
          Length = 425

 Score = 75.1 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/306 (15%), Positives = 111/306 (36%), Gaps = 22/306 (7%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--INGELEKIAVQE 79
           + +F ++      +   + ++   +NGE+I+  D+ + IA+ K      +   + IA+  
Sbjct: 31  IGLFLLIFAFYCSNAFANVKMVAMVNGELISSLDLERYIAISKFFYHVDSDVAKDIALDS 90

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG-----LSAEDFSSFLDKQGIGDNHF 134
           LI E + KQE EK  +      +     Q     G         DF S+ ++QG+  +  
Sbjct: 91  LIDEYIWKQEAEKLKVVVSEQEILDAVNQLFVMKGSNHKENHNNDFKSYTEQQGLDYDML 150

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIP--ANKQKMKNITVREYLIRTVLFSIPDNKL 192
            Q++  + +W  ++    +        EI    +     N       I+ ++  +  +  
Sbjct: 151 IQHVKSKLLWNKILMLKVVPYISVSTKEILDSQDTMLSPNGLNIFVHIQEIVLPVGLSDN 210

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
                ++          ++   +    E+ +     +++     +L + L       L  
Sbjct: 211 NVTDVIRSLHDGISIDNIKKRVEGLLFEETS-----INLKDIDIVLANQL-------LNA 258

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-YLSAQNTPTKIEKHEAEYVKKLRSN 311
             N+   P  T+ G   I + ++ ++  E A  +  L       +  K   + +  L++ 
Sbjct: 259 KVNDVIGPIKTEYGNLIIKLLNRFEINREFANSSVNLQQMYLDVQESKKYVDQISLLKTK 318

Query: 312 AIIHYY 317
           A    +
Sbjct: 319 AKCENF 324


>gi|328949546|ref|YP_004366881.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinithermus
           hydrothermalis DSM 14884]
 gi|328449870|gb|AEB10771.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinithermus
           hydrothermalis DSM 14884]
          Length = 611

 Score = 75.1 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/327 (11%), Positives = 92/327 (28%), Gaps = 32/327 (9%)

Query: 8   SLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDIS--KRIALLKL 65
           +++    +L   F L    +       +     R    +NGE + + +++  ++   L  
Sbjct: 7   AITVIFGILAVAFALGTIFLFT--PQGNPQQEGRTVLWVNGEPVRELELARLQQTTPLFA 64

Query: 66  QKINGELEKIA----VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
               G L+ +     ++++I+     Q+  +      ++ V     Q     GL      
Sbjct: 65  LNPEGALKPLIDTYFLEQVILLKALAQDAARVR--VSNSKVRQQVDQIRERFGLETRQDY 122

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
           S   +Q    +   +      +  +        +    E E        K+    E  I+
Sbjct: 123 SDFLQQIGYTDATLRDEIRTQLRINKRLEQIREQVELSEEEARFYFTLHKDTYRTEDRIK 182

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
                + D         +   ++  E  L   +      +++        G       SD
Sbjct: 183 ARQIVVDD---------EALARELRERTLAGEEFAALAREYSKVA-AEQGGAVGAEAGSD 232

Query: 242 LHPQFQNLLKKSQ----------NNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLS 289
                  ++                 T+          + +      G      +   + 
Sbjct: 233 EPQPVTRIVFPKPVADAAFALKEGGLTDVIEAGGRYHLVQVEAFLPGGDASFEEVADAVR 292

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           A     K  +   +Y++ +R+ A + +
Sbjct: 293 ADALAAKQRQAVEDYLEAVRARATVKF 319



 Score = 66.6 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/304 (10%), Positives = 71/304 (23%), Gaps = 59/304 (19%)

Query: 26  CIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETL 85
             V       +   + +  T+NGE I    + K   L+   +   +L +  + +L V+  
Sbjct: 315 ATVKFADLNLFQYVNPVVATVNGEEIP---LRKVAELVFSDQQVPQLIQQGLGQLAVQFF 371

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
                               F                            ++      +W 
Sbjct: 372 --------------------FPASLDQLIARTLLLQEAEKSGQPFVGTQEERARDVRLWK 411

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
            +            E E+     +                      +     V+      
Sbjct: 412 TL-------DVTVSEEEVRTFYNENPQRF----------------VIPASAQVKAVTFQD 448

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIG--KAQYLLESDLHPQFQNLLKK--------SQN 255
           +ES         + E       ++         +    L P    L+           + 
Sbjct: 449 KESAETFRARLIEGEALEDLAQELGGEVVDYGTVNPRQLPPVLDQLIFFSEATFAESPEG 508

Query: 256 NTTNPYVTQKG-VEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +     + G  +   + D++         ++    A     K  +   E++ +LR NA
Sbjct: 509 KVSELIELEDGTFQVALVNDQKPEVLRPFEEVQDEARALALAQKRNRIANEWLDELRENA 568

Query: 313 IIHY 316
            I  
Sbjct: 569 QIEN 572


>gi|218233359|ref|YP_002367018.1| peptidylprolyl isomerase [Bacillus cereus B4264]
 gi|296502878|ref|YP_003664578.1| peptidylprolyl isomerase [Bacillus thuringiensis BMB171]
 gi|218161316|gb|ACK61308.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus B4264]
 gi|296323930|gb|ADH06858.1| peptidylprolyl isomerase [Bacillus thuringiensis BMB171]
          Length = 283

 Score = 75.1 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/309 (11%), Positives = 89/309 (28%), Gaps = 50/309 (16%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKINGELE 73
           +      +       +++  +   S  + T  +    +T+ ++SK    L+ Q     L 
Sbjct: 1   MKKKKIFIGTIISCVMLALSACGSSDNVVTSKVGN--VTEKELSKE---LRQQYGESTLY 55

Query: 74  KIAVQE-LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           ++ + + L+ +     E  K  +    + +   F       GL  ED             
Sbjct: 56  QMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED------------- 102

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             K+ +  +  +   +K     K      +       +                      
Sbjct: 103 ELKEKMKPEIAFEKAIKATVTDKDVKNNYKPEMKVSHILVKD------------------ 144

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK 251
                 +K  K+ +E            ++++         G+           +F+    
Sbjct: 145 ------EKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAY 198

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY----VK 306
           K      ++P  T  G   I + DK++L     +K  +       +++    ++    V 
Sbjct: 199 KLDAGQVSDPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVN 258

Query: 307 KLRSNAIIH 315
            L  +A I 
Sbjct: 259 DLLKDADIK 267


>gi|73541077|ref|YP_295597.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
           JMP134]
 gi|72118490|gb|AAZ60753.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
           JMP134]
          Length = 649

 Score = 75.1 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/269 (10%), Positives = 59/269 (21%), Gaps = 27/269 (10%)

Query: 52  TDGDISKRIALLKLQKINGE-------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           T      R+      +  G        + K  +  LI    ++++++             
Sbjct: 150 TPEQFDARMRFDLATQQLGTSIAGTAFVPKSLLDRLIAVRDQQRDVQALLF--KPADYAS 207

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
                A       E   S           +             V             E+ 
Sbjct: 208 KVQPDAAALKAYYESHQSAFSVPEQAKVEYVVLSGDALAASQAV----------SPEELK 257

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
           +           E   R     I   K       Q     A +    L K  +     A 
Sbjct: 258 SYYDSNIARFRTEEQRRASHILIAAPKDGPAAARQAAKDKAGKLLEELRKHPDTFADVAR 317

Query: 225 KIH-----DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL 278
           K           G   ++    L   F++ +        ++   T  G   I +   +  
Sbjct: 318 KQSQDPGSAEKGGDLGFMGHGALVKPFEDAMYALKDGQISDVVETDYGYHIIKLTGIKP- 376

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
             E      +  +      ++  A+   +
Sbjct: 377 -SETKPLDAVRPELEAELRKQFAAKKYAE 404



 Score = 50.4 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 43/145 (29%), Gaps = 21/145 (14%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA-------------LLKLQKING 70
            F    + SY  +  SS     ++G  IT  ++   +                  Q    
Sbjct: 23  SFVFFGVESYSRFMDSSHDVAKVDGRAITVQEVDNVVREQSERMRQMLGASYDPRQFEGP 82

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV--------QHARNTGLSAEDFSS 122
            L K    +LI++ +   E+ +  +T  +  +                ++  +  + +  
Sbjct: 83  MLRKNVTDQLILQRVVANEVAREHLTVSNARLYEAINSIPAIAQLPRKQDGSVDDKAYVQ 142

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDV 147
            L  QG+    F   +        +
Sbjct: 143 LLAAQGMTPEQFDARMRFDLATQQL 167


>gi|55980571|ref|YP_143868.1| peptidyl-prolyl cis-trans isomerase [Thermus thermophilus HB8]
 gi|55771984|dbj|BAD70425.1| peptidyl-prolyl cis-trans isomerase [Thermus thermophilus HB8]
          Length = 337

 Score = 74.7 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/317 (8%), Positives = 72/317 (22%), Gaps = 29/317 (9%)

Query: 8   SLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL---- 63
            +  F + +  + +      + ++          +   +  E IT      R  L     
Sbjct: 17  RMRSFTRSMLAWGMRAFLLALTLLLVPMALAQGEVVAQVGPEAITREAFELRYGLFVRSA 76

Query: 64  ----------KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
                     + + +        ++ L  E    Q   + G+  D   V           
Sbjct: 77  LAQLGLPDTEEARALLAAYRPAFLEALAREKALLQRAREEGLYPDPAAVEARVHALKEAF 136

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
                   +       G   +++ +A       + +  +  +       + A        
Sbjct: 137 PEEEALEEALRQAGVPGLEAYRRLVAEAMALEAL-EARYRSRIAVSRAALKALWLLSPEY 195

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIG 232
                     L      +++          +A     R           +         G
Sbjct: 196 RHPTLYCARHLLVPTREEVE----------EARLRLARGEAFAEVARAVSQDPGSREEGG 245

Query: 233 KAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ 291
                 E    P F+   ++      + P  T+ G   I +   R +         ++  
Sbjct: 246 DLGCAPEGTYVPAFEEALVRLRPGEVSGPVRTEFGYHLILLE--RVVPPGRYPLEEVAPL 303

Query: 292 NTPTKIEKHEAEYVKKL 308
                 ++      + L
Sbjct: 304 LEKEVADRAWERLEEAL 320


>gi|255322964|ref|ZP_05364100.1| ferric receptor CfrA [Campylobacter showae RM3277]
 gi|255299826|gb|EET79107.1| ferric receptor CfrA [Campylobacter showae RM3277]
          Length = 278

 Score = 74.7 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 95/299 (31%), Gaps = 30/299 (10%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           +      +      +  +S+ I   I  E IT  ++ K  A L+  + N      A+  L
Sbjct: 5   ISFAAFFLSFCMANASQISNGIAVIIENEPITVNEVRKAAAQLQTSEAN------ALNLL 58

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I + L+  +I+   I      +N    + A  +G+SA D  S +  +G     FK  +A 
Sbjct: 59  IRDRLETAQIKNLKIEASDYELNQRLQKIASESGMSASDLRSAVLSKGGDYAQFKDDVAK 118

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
                 + ++ F     N+         +        +   +V   +  +    +     
Sbjct: 119 TIKQEKLYQSIFAEAKINISENAARAYFEQNRDLFAHFTDVSVTRYVAPSMQLLEAARHS 178

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS-QNNTTN 259
              +   S                            L    + PQ + + +++     T 
Sbjct: 179 SPMNTNHSVHM---------------------DVLDLKSEQIPPQLRTIFQQTADGTFTQ 217

Query: 260 PYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + T +G E   +  K+         ++          + ++   EY  KLR+ A + Y
Sbjct: 218 IFQTPQGFEMFYVASKKGQTMPEFDEVRDEAMNALYKLEQDRVIGEYFNKLRAKANVKY 276


>gi|254428426|ref|ZP_05042133.1| PPIC-type PPIASE domain protein [Alcanivorax sp. DG881]
 gi|196194595|gb|EDX89554.1| PPIC-type PPIASE domain protein [Alcanivorax sp. DG881]
          Length = 632

 Score = 74.7 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/274 (10%), Positives = 81/274 (29%), Gaps = 16/274 (5%)

Query: 53  DGDISKRIALLKLQKINGELEKIAVQE------LIVETLKKQEIEKSGITFDSNTVNYFF 106
             +   R   +  Q     L +  ++E      +  +     E+ +     + +    + 
Sbjct: 122 RFERELRARGMNPQSYIQGLRQDMIKEQFRAGFMQTDFSLPSELNEQRRLGEQSRDIRYA 181

Query: 107 VQHARNTGLSAE-DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
                +                      F +    +  + ++  + +  +    + ++ A
Sbjct: 182 QLDINSLRKQFSVSDEEVKAFYDENQGEFMRPEEFKVSYVELSADKYADQVSVTDEDVKA 241

Query: 166 NKQKMKNITVR----EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
                K+I       +   +     I  N  ++    + R ++A ++        +   +
Sbjct: 242 EYDVRKSIMEEAGAGDAPRQVSHILIEVNDDRDLEQAKVRAREAAKAIAGGESFADAAAQ 301

Query: 222 FASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK---R 276
           ++       S G    + +  L  + ++ +   +    + P VT  GV  I +  +   R
Sbjct: 302 YSDDSGSAQSGGDLGVVSKGALPEEMEDAIADLASGTVSAPVVTDAGVHLIKVTQEETAR 361

Query: 277 DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
            L     L   + A     + E    + V KL  
Sbjct: 362 ALPSLAELSDQIRADLKKARAEALLNDDVAKLEE 395



 Score = 57.0 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/312 (10%), Positives = 91/312 (29%), Gaps = 24/312 (7%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI----ALLKLQKI 68
           +  +    +++ F I     Y     +  +   + G  IT   +++R+     +L+ Q  
Sbjct: 1   MGKVLLAAIILPFVISGFYGYFVGGSTGDVVAEVEGSKITRSVVNQRVERVRNMLREQSP 60

Query: 69  NGELE--------KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ---HARNTGLSA 117
           N            ++ +  ++ E L     E+S + F    V     +      +   S 
Sbjct: 61  NMNPALLDSFVRPEMVLDGIVNEQLILAAAEQSSMVFSEQQVAADIYKVPLFQEDGKFSE 120

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
           + F   L  +G+    + Q L    I            +          ++++   +   
Sbjct: 121 QRFERELRARGMNPQSYIQGLRQDMIKEQFRAGFMQTDFSLPSE--LNEQRRLGEQSRDI 178

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
              +  + S+      +   V+    + +   +R  +      + ++  +   +      
Sbjct: 179 RYAQLDINSLRKQFSVSDEEVKAFYDENQGEFMRPEEFKVSYVELSADKYADQVSVTDED 238

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY-IAICDKRDLGGEIALKAYLSAQNT-PT 295
           ++++     +  + +       P          I + D RDL          +       
Sbjct: 239 VKAEYD--VRKSIMEEAGAGDAPRQVS---HILIEVNDDRDLEQAKVRAREAAKAIAGGE 293

Query: 296 KIEKHEAEYVKK 307
                 A+Y   
Sbjct: 294 SFADAAAQYSDD 305


>gi|325851854|ref|ZP_08171019.1| PPIC-type PPIASE domain protein [Prevotella denticola CRIS 18C-A]
 gi|325484696|gb|EGC87609.1| PPIC-type PPIASE domain protein [Prevotella denticola CRIS 18C-A]
          Length = 474

 Score = 74.7 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/289 (7%), Positives = 78/289 (26%), Gaps = 34/289 (11%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
            +  +  + +  ++  +     TING+ ++  +             +G +++ +V E + 
Sbjct: 5   ALLSVALLSATMAYGQADPTIMTINGQPVSRSEFEYSYN---KNNTDGVIDRKSVDEYVP 61

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
             +  +   ++ +    +T+  F  +                           +    Q 
Sbjct: 62  LFVNYKLKVQAALDAHLDTLPAFRKEFLGYRNQQIRPAFITDADVEDEARKIYRDTKQQI 121

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
                                              +    ++        + +   ++  
Sbjct: 122 ----------------------------DANGGLWHCAHILIGMGQHTSKEEEAAARQLA 153

Query: 203 KDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNP 260
                +  R     N  +++++      + G    L +     +F+  +       T+ P
Sbjct: 154 DSIYTALQRGADFANLAKRYSTDTSSAKNGGDLPRLQKGQTVAEFEKAMLTLKPGETSRP 213

Query: 261 YVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT-KIEKHEAEYVKKL 308
            ++  G   I +     L    +L+A +          ++   + +  L
Sbjct: 214 MLSPFGYHIIRMIGHESLPPYDSLRADIMQYIEMRGLRDQIINQRLDSL 262


>gi|169825994|ref|YP_001696152.1| foldase protein prsA 1 [Lysinibacillus sphaericus C3-41]
 gi|168990482|gb|ACA38022.1| Foldase protein prsA 1 precursor [Lysinibacillus sphaericus C3-41]
          Length = 319

 Score = 74.7 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/311 (11%), Positives = 81/311 (26%), Gaps = 49/311 (15%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKINGELE 73
           +  T   L +   V  +   S   S  I T  +    I+  D +++   L          
Sbjct: 1   MKKTVLSLTLAASVLALGACSGGDSKAIVTSKVGD--ISVADFNEKAKSLTGPY------ 52

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
              +Q+++ E +                    +   A   G S     +       G   
Sbjct: 53  --VLQQMVTEKVL-----SDKYEVTDKEFKEAYDVTASQFGDSFSQALAESGLTEEGF-- 103

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                   S+   +++   +      E ++                          N   
Sbjct: 104 ------KDSLRVQLLQEKALKDQAIKEEDVKKYY---------------EQMKTELNGRH 142

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK 252
                +K  K+         K  +  +++++        G+  +     +  +F +    
Sbjct: 143 ILVADEKTAKEVIAKIKGGAKFADVAKEYSTDTGSAEKGGELGWFSVGSMVDEFNDAAYA 202

Query: 253 -SQNNTTNPYVTQKGVEYIAICDKRDLG---GEIALKAYLSAQNTPTKIEK-----HEAE 303
              N  + P  T  G   I I DKRD+         +  +         +         +
Sbjct: 203 LELNTLSEPVQTSFGYHVIEITDKRDVKDVGSFKDEEENIRTAMLGKLKQTGEDQVILKD 262

Query: 304 YVKKLRSNAII 314
            + K+  +A +
Sbjct: 263 IIAKMAKDANV 273


>gi|228939473|ref|ZP_04102061.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228972327|ref|ZP_04132938.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978940|ref|ZP_04139306.1| Foldase protein prsA 1 [Bacillus thuringiensis Bt407]
 gi|228780814|gb|EEM29026.1| Foldase protein prsA 1 [Bacillus thuringiensis Bt407]
 gi|228787344|gb|EEM35312.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820173|gb|EEM66210.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
          Length = 293

 Score = 74.7 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/309 (12%), Positives = 89/309 (28%), Gaps = 50/309 (16%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKINGELE 73
           L      +       +++  +   S  + T  +    +T+ ++SK    L+ Q     L 
Sbjct: 11  LKKKKIFIGTIISCVMLALSACGSSDNVVTSKVGN--VTEKELSKE---LRQQYGESTLY 65

Query: 74  KIAVQE-LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           ++ + + L+ +     E  K  +    + +   F       GL  ED             
Sbjct: 66  QMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED------------- 112

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             K+ +  +  +   +K     K      +       +                      
Sbjct: 113 ELKEKMKPEIAFEKAIKATVTEKDVKDNYKPEMKVSHILVKD------------------ 154

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK 251
                 +K  K+ +E            ++++         G+           +F+    
Sbjct: 155 ------EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAY 208

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY----VK 306
           K      ++P  T  G   I + DK++L     +K  +       +++    ++    V 
Sbjct: 209 KLDAGQVSDPVKTTYGYHIIKVTDKKELKPFDEVKEKIRKDLEQQRLQDTTGKWKQQVVN 268

Query: 307 KLRSNAIIH 315
            L  +A I 
Sbjct: 269 DLLKDADIK 277


>gi|322379755|ref|ZP_08054065.1| chaperone SurA [Helicobacter suis HS5]
 gi|321147826|gb|EFX42416.1| chaperone SurA [Helicobacter suis HS5]
          Length = 371

 Score = 74.7 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 87/278 (31%), Gaps = 30/278 (10%)

Query: 42  IRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           I  T+N + IT   I  +  +  +        + A+  LI++ ++ QEI++  I  + + 
Sbjct: 119 IALTVNNDPITLYQIEMQEKVNHVN------RQQAINSLILQRIQAQEIKRLKIDIEDDK 172

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
           V+      A++ G++  DF   L  +GI    +K  L  Q    ++++N  +        
Sbjct: 173 VDAEIENIAKHNGMNVSDFMRTLAGEGINPVAYKAQLKKQLETRELLRNILLFNANTNSE 232

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
                                       +       ++ +  D         +   K   
Sbjct: 233 TKMREYYNAHRDEFTVPSDVLATRYTAKDTQTLTQALEHKDTDVPGVTKGEERISIKALN 292

Query: 222 FASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY-IAICDK--RDL 278
                                    Q  L   ++  T       G      I +K  +  
Sbjct: 293 ---------------------PQIAQMFLSTKEHTFTPILNAGGGNYVAFYIEEKLGKQE 331

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                 + +++ +    + +K  AEY +KLR  A I +
Sbjct: 332 VSFAQARGFIANKLIEEQQDKILAEYYEKLRVKAKIKF 369


>gi|255100589|ref|ZP_05329566.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-63q42]
          Length = 318

 Score = 74.7 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/340 (13%), Positives = 105/340 (30%), Gaps = 50/340 (14%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K++  +   + L+                       ++    +N   IT     K  
Sbjct: 1   MNKKIYIGMVGILSLMMVGC-------------------NKSLAKVNDVEITKEQYKKTK 41

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
           A+L        +   ++ EL     KK   +   +       N    Q A++ GL+    
Sbjct: 42  AVLSATNNY--INGQSLDELEKTLDKKGRNKLENVIISFMVDNELLYQEAKDKGLTPSKS 99

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKND------------------FMLKYGNLEME 162
                 Q + D         + +    V  D                  F  +    + +
Sbjct: 100 EVDSKYQELEDKMNLNTSYKEKMDKAGVDKDYLKQEISRDLAIDKNKKAFEDRINISDND 159

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQN------QGFVQKRIKDAEESRLRLPKDC 216
           + A     K     E +  + +     +K +       +  ++K+  +            
Sbjct: 160 MEAYYTSHKKDFNVEEVSASQILISTLDKNKKEVSKDKKEALKKKADNILTKIKNGESFE 219

Query: 217 NKLEKFASK-IHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICD 274
           +  +K++       + G+  Y  + D + +F + + K  +N  +N + T  G   + + D
Sbjct: 220 SLAKKYSDDKATGKNGGQLGYFTKDDKNAEFTKEVFKLKKNEVSNVFETSYGYHIVKVTD 279

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           KR+            +    + + +   E++KKL  +A I
Sbjct: 280 KRER---QKSFNECQSLIRESILNEKYIEHIKKLNEDAKI 316


>gi|297181079|gb|ADI17278.1| parvulin-like peptidyl-prolyl isomerase [uncultured alpha
           proteobacterium HF0070_17D04]
          Length = 355

 Score = 74.7 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 74/300 (24%), Gaps = 43/300 (14%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRI-RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQ 78
           FV      + +V         RI   TI+GE I   +I      L  +     +      
Sbjct: 78  FVATAALCLSLVVPAQVIAQDRIAVATIDGESIWLDEIMAIAETLPPEYQQQGIA-GIYD 136

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
           +L+ +                   N      A  +    ++                +  
Sbjct: 137 QLVDDVA-----------------NSRLAAIAARSSGLDKEEDVASA---------MRTA 170

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
           A + +    +  +   +     ++   +       +        +L              
Sbjct: 171 ADRVLAEAYITREVGKEITEEAIQAAYDTYVADTGSRETVTASHIL-----------VET 219

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNT 257
           ++  K   +  +          + ++       G         + P F+         + 
Sbjct: 220 EEEAKAIIDQLMDGADFAELAREKSTGPSGPGGGSLGSFGRGQMVPAFEAAAFGMPVGSF 279

Query: 258 TN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           ++ P  TQ G   I + +K     E      +  Q       +  A  V+ LR    I  
Sbjct: 280 SDNPVQTQFGWHVIQVSEK--GIQEAPALDQMRDQIAANLSRQSFARIVETLRVGTTIEI 337


>gi|223040718|ref|ZP_03610986.1| ferric receptor CfrA [Campylobacter rectus RM3267]
 gi|222878002|gb|EEF13115.1| ferric receptor CfrA [Campylobacter rectus RM3267]
          Length = 278

 Score = 74.7 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 95/299 (31%), Gaps = 30/299 (10%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           +      +      +  +S+ I   I  E IT  ++ K  A L+  + N      A+  L
Sbjct: 5   ISFAAFFLSFCMANASQISNGIAVIIENEPITVNEVRKAAAQLQTNEAN------ALNLL 58

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I + L+  +I+   I      +N    + A  +G+SA D  S +  +G     FK  +A 
Sbjct: 59  IRDRLETAQIKNLKIEASDYELNQRLQKIASESGMSASDLRSAVLSKGGDYAQFKDDVAK 118

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
                 + ++ F     N+         +        +   +V   +  +    +     
Sbjct: 119 TIKQEKLYQSIFADAKINISENAARAYFEQNRDLFAHFTDASVTRYVASSAQLLEVARHS 178

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTN 259
              +   +                            L    + PQ + + +++     T 
Sbjct: 179 SPMNTNHNVHM---------------------DVLDLKSEQIPPQLRTIFQQTPDGTFTQ 217

Query: 260 PYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + T +G E   +  K+         ++          + ++   EY  KLR+ A + Y
Sbjct: 218 IFQTPEGFEMFYVASKKGQTMPEFDEVRDEAMNALYKLEQDRVIGEYFNKLRAKANVKY 276


>gi|225862989|ref|YP_002748367.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus 03BB102]
 gi|225790183|gb|ACO30400.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus 03BB102]
          Length = 287

 Score = 74.7 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/305 (11%), Positives = 89/305 (29%), Gaps = 46/305 (15%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S +I T+  G+ IT  +  +++          +  K 
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKIVTSKAGD-ITKDEFYEQMKT--------QAGKQ 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +++E +  +  +      D                   + F + L +QGI +   K
Sbjct: 52  VLNNMVMEKVLIKNYKVEDKEVDKKYD--------EMKKQYGDQFDTLLKQQGIKEETLK 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +  Q      ++     K      +       +                         
Sbjct: 104 TGVRAQLAQEKAIEKTITDKELKDNYKPEIKASHILVKD--------------------- 142

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              +   K  +E   +        ++++         G   +     +  +F++   K  
Sbjct: 143 ---EATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGAGKMVKEFEDAAYKLK 199

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
           ++  + P  +Q G   I + D ++        KA +  +    K +  +   + + K   
Sbjct: 200 KDEVSEPVKSQFGYHIIKVTDIKEPEKSFEQSKADIKKEIVQKKAQDGEFMNDLMMKEIK 259

Query: 311 NAIIH 315
            A + 
Sbjct: 260 KADVK 264


>gi|118476653|ref|YP_893804.1| peptidylprolyl isomerase [Bacillus thuringiensis str. Al Hakam]
 gi|196044235|ref|ZP_03111471.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus 03BB108]
 gi|229090092|ref|ZP_04221342.1| Foldase protein prsA 1 [Bacillus cereus Rock3-42]
 gi|229183351|ref|ZP_04310579.1| Foldase protein prsA 1 [Bacillus cereus BGSC 6E1]
 gi|301052687|ref|YP_003790898.1| peptidylprolyl isomerase [Bacillus anthracis CI]
 gi|118415878|gb|ABK84297.1| protein export protein [Bacillus thuringiensis str. Al Hakam]
 gi|196024874|gb|EDX63545.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus 03BB108]
 gi|228600135|gb|EEK57727.1| Foldase protein prsA 1 [Bacillus cereus BGSC 6E1]
 gi|228693169|gb|EEL46880.1| Foldase protein prsA 1 [Bacillus cereus Rock3-42]
 gi|300374856|gb|ADK03760.1| peptidylprolyl isomerase [Bacillus cereus biovar anthracis str. CI]
          Length = 287

 Score = 74.7 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/305 (11%), Positives = 89/305 (29%), Gaps = 46/305 (15%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S +I T+  G+ IT  +  +++          +  K 
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKIVTSKAGD-ITKDEFYEQMKT--------QAGKQ 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +++E +  +  +      D                   + F + L +QGI +   K
Sbjct: 52  VLNNMVMEKVLIKNYKVEDKEVDKKYD--------EMKKQYGDQFDTLLKQQGIKEETLK 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +  Q      ++     K      +       +                         
Sbjct: 104 TGVRAQLAQEKAIEKTITDKELKDNYKPEIKASHILVKD--------------------- 142

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              +   K  +E   +        ++++         G   +     +  +F++   K  
Sbjct: 143 ---EATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGAGKMVKEFEDAAYKLK 199

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
           ++  + P  +Q G   I + D ++        KA +  +    K +  +   + + K   
Sbjct: 200 KDEVSEPVKSQFGYHIIKVTDIKEPEKSFEQSKADIKKEIVQKKAQDGEFMNDLMMKEIK 259

Query: 311 NAIIH 315
            A + 
Sbjct: 260 KADVK 264


>gi|86160748|ref|YP_467533.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85777259|gb|ABC84096.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 356

 Score = 74.7 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/283 (12%), Positives = 85/283 (30%), Gaps = 33/283 (11%)

Query: 43  RTTINGEVITDGDISKRIA----LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFD 98
             T NG  IT G++  R+      ++ +    E +K  +  L+   +  +E E+ G+  D
Sbjct: 32  VATGNGFTITAGELKARLDEQSPFIRARYSTLERKKEFLDNLVRFEVLAREAERQGLAND 91

Query: 99  SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGN 158
                       +                   +       A +++    ++  +      
Sbjct: 92  PEVQLTLKKVMVQKL--------------VQKNFQDASGAAAEALPEADLQKYY------ 131

Query: 159 LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
            E +    + +   +    +                +  + K   + +++ L   +  N+
Sbjct: 132 DEHKAEYYRPRRVRLAAIVWNAPAGSPERAAKVALAKKALAKLKAEEKKNTLAFAQLVNE 191

Query: 219 LEKFASKIHDVSIGKAQYLLESDLHPQFQNL-----LKKSQNNTTNPYVTQKGVEYIAIC 273
             + A      + G   +    DL   +               T+    T  GV  +   
Sbjct: 192 FSEDA--ASKATAGDLGFKTREDLEKAYSKEFADVAYNLQPGATSGVLETPNGVYLVKGT 249

Query: 274 DKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            ++D        +K  +  +    K  K    ++KKLR +A +
Sbjct: 250 GEQDELNRTFEQVKPQIQTKLYREKKTKEFDAWLKKLRDDAKV 292


>gi|254293162|ref|YP_003059185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hirschia baltica
           ATCC 49814]
 gi|254041693|gb|ACT58488.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hirschia baltica
           ATCC 49814]
          Length = 322

 Score = 74.7 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/314 (13%), Positives = 79/314 (25%), Gaps = 56/314 (17%)

Query: 16  LTTYFVLIIFC----IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
           L    +++  C     + I    + A  + I  T++G  I   DI        +      
Sbjct: 21  LLGALIVLSACEDEQAILIQPTPTAADDAVIAATVDGYPIYVADIEMEAESQGILLAGRT 80

Query: 72  LE------KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
           L+         +  LI + L  +E EK  +  D    +   V   R  G           
Sbjct: 81  LDPSTPEFTRILNSLIDDHLLAKEAEKQNLHTDPYVQHRLKVIRERLLGNMLLSQGVDEA 140

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
                         +Q      V+   +                                
Sbjct: 141 SIQKYYETSINLKQLQLGEEYRVRQIVLPT------------------------------ 170

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH-P 244
                       ++      ++             +   +   +  G   ++       P
Sbjct: 171 ------------LEAANAMIKQMTAETDFSVLASNRSIDEETRLEGGDLGFINPETAPLP 218

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
               +   +    + P+ T+KG   I + +KR           L  Q     I       
Sbjct: 219 LANAIQNTAMGGVSKPFETRKGWVVIKVVEKRPEPL--PTLQDLRPQIWDFLIASELERL 276

Query: 305 VKKL-RSNAIIHYY 317
           +KKL + +AII  +
Sbjct: 277 LKKLHKDSAIIRSF 290


>gi|224824910|ref|ZP_03698016.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
           2002]
 gi|224602581|gb|EEG08758.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
           2002]
          Length = 244

 Score = 74.7 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/174 (10%), Positives = 53/174 (30%), Gaps = 4/174 (2%)

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
             +++ +  +     E             TV E +  + +      +   Q  + +    
Sbjct: 60  EHLLEREVKVPQAGDEEVERHYLANPGRYTVGELVFASHILLQVTERTPIQPLLARAEAI 119

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN--LLKKSQNNTTNPYV 262
             +++    +      + ++       G    L   D  P+F+       S         
Sbjct: 120 LHQAQADASRFAELAREMSNCPSAQVGGSLGQLQRGDTVPEFEAVLFADGSVGVLPRVVR 179

Query: 263 TQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           T+ G   + +  +           +  +++      + +   +Y+++L SNA +
Sbjct: 180 TRYGFHIVKVERREPGKLLPLEMARDRVASDLAEQSLSRSLQQYLERLASNAEV 233


>gi|323697783|ref|ZP_08109695.1| hypothetical protein DND132_0363 [Desulfovibrio sp. ND132]
 gi|323457715|gb|EGB13580.1| hypothetical protein DND132_0363 [Desulfovibrio desulfuricans
           ND132]
          Length = 370

 Score = 74.7 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 85/286 (29%), Gaps = 28/286 (9%)

Query: 42  IRTTINGEVITDGDISKRIALLKLQKIN------GELEK---IAVQELIVETLKKQEIEK 92
           I   +NG  I    +  +    +   +        +L +     + +LIV+ L  QE+ +
Sbjct: 27  IVARVNGAPIHLSQLEFQHDQFQEDSVGAYVPSVEKLRREYGEILSDLIVQELVVQELAR 86

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             ++     +     + A         F   L ++ I    ++  L          +   
Sbjct: 87  RDLSVTDEELRKA--EDAVRADYPEGAFDQVLVEEYIDLKSWRTQLRYYLAQKKFFQQVL 144

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
             +      E     +   +       +R +L     ++      V K +KD ++  L  
Sbjct: 145 RPQIKIDYKEAEKYYRDHISDFYLPESMR-ILVVRGPSRELVVKAVDKYLKDHDQMSLAT 203

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIA 271
                +  +               + E  L   ++           ++    + G E + 
Sbjct: 204 AFGEVETREVV-------------VREGRLSAPWRTALTGLKPGQASDVLTDRFGFEALV 250

Query: 272 ICDKRDLGGEIALKAY--LSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           + ++ +       +AY  +       K+E    E++    + A I 
Sbjct: 251 LLERSEAKVLPPAQAYPLVEEALLEKKMESAFEEWLSATLAKADIQ 296


>gi|239947019|ref|ZP_04698772.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921295|gb|EER21319.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 295

 Score = 74.7 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/303 (12%), Positives = 90/303 (29%), Gaps = 23/303 (7%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGELE 73
           L++   V      + A    I  ++N E IT  +   R  ++             + +L 
Sbjct: 4   LLLIITVFFTFNVAQASLPNIVASVNDEPITLNEFRARKKMIMALNNVESLTPAQDKQLS 63

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
            + ++ LI E+L  Q             ++           +       +L  + +  + 
Sbjct: 64  DLVIKSLIDESLLFQYAGDRE--IPQEEIDNAIKSIEDRNKMPHGSLLQYLKSRSVNPDS 121

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
           F   +  + I  +++ +           EI           V   +         +    
Sbjct: 122 FISQIKSELIKMNILSS-LSRSVQVSNKEIDVAILSSDQKDVEISMQVFTSKDGGNKAFT 180

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS 253
               ++ R+K   + +  L  +   ++    K+  +               +   +   +
Sbjct: 181 QMNNLKNRLKKCADVKKSLYDNFATMQIITDKLSKIEG------------VKQTIIKDLT 228

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            +  +N +      E I +C K+ L        Y+    T  KI +   +  + +R  A 
Sbjct: 229 PDKASNVFEVNNKFEIILVCSKKILNVNEDENNYVVNFLTNKKISQKAQKMFENMRKKAA 288

Query: 314 IHY 316
           I  
Sbjct: 289 IKI 291


>gi|237748739|ref|ZP_04579219.1| peptidyl-prolyl cis-trans isomerase [Oxalobacter formigenes OXCC13]
 gi|229380101|gb|EEO30192.1| peptidyl-prolyl cis-trans isomerase [Oxalobacter formigenes OXCC13]
          Length = 647

 Score = 74.7 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/210 (10%), Positives = 55/210 (26%), Gaps = 8/210 (3%)

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
            + F  +A      +             +  F            +            + +
Sbjct: 194 QHLFFNNAAYRSKVSVTDEELNAFYKAHEAQFTIPEHADVEVIVLDMPSVAKNIKISDAD 253

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           + +   + K+        R     I  NK   +    +  K AE     L  +  +  + 
Sbjct: 254 LQSYYSQNKDRFSIPEERRAQHILIAVNKNATEAEKSEAKKKAEGILAELKANPARFAEL 313

Query: 223 ASKIH-----DVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKR 276
           A           + G   +     +   F + +    + + ++   T  G   I + D +
Sbjct: 314 AKANSQDPGSAQNGGDLGFFTRGKMVKPFNDAVFGMKKGDISDLVQTDFGYHIITVSDIK 373

Query: 277 D--LGGEIALKAYLSAQNTPTKIEKHEAEY 304
                    ++  +  + T  +  +  AE 
Sbjct: 374 PAVAKPLAQVRDRVLQELTREQANRKFAEM 403



 Score = 52.4 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/327 (9%), Positives = 81/327 (24%), Gaps = 32/327 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +        +++   F++  F  V +  +K +         + G+ IT  +     
Sbjct: 1   MLEFIRNH-KRLTQIILLVFIIPSFIFVGVEGFKRFGDGDA-VAKVAGKSITQQEWDNAQ 58

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
                +                    E +   +Q LIV+ +  + + K  ++     V  
Sbjct: 59  REQAERLRQRAAASGQPFDNKWIESSEFKWNVLQNLIVKRVLLETVNKENLSVPEQIVLQ 118

Query: 105 FFVQHA----RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
              +       +  L    +   L  QG+  +     +        +             
Sbjct: 119 RIREIPGLIGPDGKLDEARYKEALAAQGLNPDMHFAMVRQDMAIQQLAAPIEYSAIEPTA 178

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
           +         +   V+        +    +    +     +  +A+ +          + 
Sbjct: 179 VTQRVFNLFEQEREVQHLFFNNAAYRSKVSVTDEELNAFYKAHEAQFTIPEHADVEVIVL 238

Query: 221 KFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
              S   ++ I               Q+   ++++  + P   +     IA+        
Sbjct: 239 DMPSVAKNIKISD----------ADLQSYYSQNKDRFSIPEERRAQHILIAVNKNATEAE 288

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKK 307
           +   K          K        + K
Sbjct: 289 KSEAKKKAEGILAELKANPARFAELAK 315



 Score = 40.0 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 33/271 (12%), Positives = 64/271 (23%), Gaps = 9/271 (3%)

Query: 49  EVITDGDISKRIALLKLQKINGELEKIAVQELIVETL-KKQEIEKSGITFDSNTVNYFFV 107
            +IT  DI   +A     K   ++    +QEL  E   +K        +           
Sbjct: 365 HIITVSDIKPAVA-----KPLAQVRDRVLQELTREQANRKFAEMSETFSNMVYEKPDSLK 419

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
             A    L+   F +      I     +     + +      +    K+    +E     
Sbjct: 420 PVADALKLTIHSFPNLARDPAIAAKQNQLLANPKILQAIFTDDVVKGKHNTEAIEAAPQV 479

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
                I        T    +           + +          L K             
Sbjct: 480 LVAARIAKHYPATLTPFDKVKQVITAEVINEKAQKLAKAAGEAELAKLKEGSNANGFSSS 539

Query: 228 DVSIG-KAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK-RDLGGEIALK 285
            +    K      ++L P  +  + K             G     I         +  L+
Sbjct: 540 IMVSRHKIAMANRAELAPVMKADVSKLPAYVGADVP-GMGYVIYRITKVVTPSNPDKNLR 598

Query: 286 AYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             +S Q      ++    Y+  L+  A +  
Sbjct: 599 EAMSKQMANVASQQDLNAYLNYLKKEAKVEI 629


>gi|332524209|ref|ZP_08400435.1| putative peptidyl-prolyl cis-trans isomerase transmembrane protein
           [Rubrivivax benzoatilyticus JA2]
 gi|332107544|gb|EGJ08768.1| putative peptidyl-prolyl cis-trans isomerase transmembrane protein
           [Rubrivivax benzoatilyticus JA2]
          Length = 635

 Score = 74.7 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/202 (10%), Positives = 52/202 (25%), Gaps = 8/202 (3%)

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
           A     +    +            F+     Q  +  +            E ++    ++
Sbjct: 198 AAYRAQATPGDADLQAYYEAHSGEFRAPEQAQIEYVVLDLAALAKDVAVPEEDLRRYYEE 257

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-- 227
             +   +    R     I  +        +     AE+    + +  N   + A K    
Sbjct: 258 NASRYTQAEERRASHILIRVDPSAPADEKKAAKARAEQLLAEVRRSPNSFAEVARKNSQD 317

Query: 228 ---DVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKR--DLGGE 281
                  G   +     +   F++ +        +N   T  G   I +   R       
Sbjct: 318 PGSASRGGDLDFFGRGMMAKPFEDAVYAMKTGEISNVIETDFGYHVITLTGLRGGQKKAF 377

Query: 282 IALKAYLSAQNTPTKIEKHEAE 303
             ++A +  +   +  +K  AE
Sbjct: 378 DTVRAEIEQEVRRSLAQKRYAE 399



 Score = 42.7 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 31/292 (10%), Positives = 78/292 (26%), Gaps = 30/292 (10%)

Query: 24  IFCIVPIVSYKSWAMSSRI-RTTINGEVITDGDIS----KRIALLKLQKIN--------G 70
            F    +  Y  +     +    + G+ I+  +        I  L+ Q+           
Sbjct: 23  SFIFFGVQGYSRFTEGGAVTVAEVGGQAISRAEWDAAHQNNIERLRRQRPELDPKLLETP 82

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED---FSSFLDKQ 127
           EL++  +  L+ + +      +  +  D   +   FV   +  GL   D       L  Q
Sbjct: 83  ELKRETLDGLVRDRVLMATARQYHLVPDDARLQRLFVTDPQFAGLRNPDGSVNREILAAQ 142

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
           G+    F+Q L  +     V+       +    +   +    ++   V+           
Sbjct: 143 GMSVEAFEQQLRQEFGMQQVLGAVAQSSFTPPAVAATSLDALLQRREVQIQRF------- 195

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ-- 245
                    +  +      + +        +         +  +     L +    P+  
Sbjct: 196 -----DAAAYRAQATPGDADLQAYYEAHSGEFRAPEQAQIEYVVLDLAALAKDVAVPEED 250

Query: 246 FQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
            +   +++ +  T     +     I +        + A KA         + 
Sbjct: 251 LRRYYEENASRYTQAEERRASHILIRVDPSAPADEKKAAKARAEQLLAEVRR 302


>gi|254975115|ref|ZP_05271587.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-66c26]
 gi|255092504|ref|ZP_05321982.1| putative peptidyl-prolyl isomerase [Clostridium difficile CIP
           107932]
 gi|255314242|ref|ZP_05355825.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-76w55]
 gi|255516921|ref|ZP_05384597.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-97b34]
 gi|255650024|ref|ZP_05396926.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-37x79]
          Length = 318

 Score = 74.7 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/340 (13%), Positives = 105/340 (30%), Gaps = 50/340 (14%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K++  +   + L+                       ++    +N   IT     K  
Sbjct: 1   MNKKLYIGMVGILSLMMVGC-------------------NKSLAKVNDVEITKEQYKKTK 41

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
           A+L        +   ++ EL     KK   +   +       N    Q A++ GL+    
Sbjct: 42  AVLSATNNY--INGQSLDELEKTLDKKGRNKLENVIISFMVDNELLYQEAKDKGLTPSKS 99

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKND------------------FMLKYGNLEME 162
                 Q + D         + +    V  +                  F  +    + +
Sbjct: 100 EVDSKYQELEDKMNLNTSYKEKMDKAGVDKEYLKQEISRDLAIDKNKKAFEDRINISDND 159

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQN------QGFVQKRIKDAEESRLRLPKDC 216
           + A     K     E +  + +     +K +       +  ++K+  +            
Sbjct: 160 MEAYYTSHKKDFNVEEVSASQILISTLDKNKKEVSKDKKEALKKKADNILTKIKNGESFE 219

Query: 217 NKLEKFASK-IHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICD 274
           +  +K++       + G+  Y  + D + +F + + K  +N  +N + T  G   + + D
Sbjct: 220 SLAKKYSDDKATGKNGGQLGYFTKDDKNAEFTKEVFKLKKNEVSNVFETSYGYHIVKVTD 279

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           KR+            +    + + +   E++KKL  +A I
Sbjct: 280 KRER---QKSFNECQSLIRESILNEKYIEHIKKLNEDAKI 316


>gi|224373789|ref|YP_002608161.1| putative periplasmic protein [Nautilia profundicola AmH]
 gi|223588950|gb|ACM92686.1| putative periplasmic protein [Nautilia profundicola AmH]
          Length = 270

 Score = 74.7 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 98/296 (33%), Gaps = 32/296 (10%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVE 83
           I  ++ ++      +  +I  T+N   IT  ++ K  + LK+       +  A+Q L+ +
Sbjct: 4   ILFVLSLIISLHSEVIDKIIATVNNIPITSYEVDKLASSLKIS------KDKALQYLLDQ 57

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            L + EI+K GI  D   +     + A+  GLS  +F + L  Q       +  +    +
Sbjct: 58  KLIQSEIQKRGIDVDDFEIENAMEKIAKQNGLSLFEFKNIL-MQKGQYQQLRNKIKDDLL 116

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
              +       K    + E+    +  K+       ++   ++  + K  N+        
Sbjct: 117 KEKLFNQIVQTKLKISQDELKNFYENNKDQFKIFSTVQVTKYTANNKKSLNEIKKNPLAN 176

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVT 263
              ++  ++              +++ +G      ++                 T     
Sbjct: 177 ANVKTETKVY-----------SYNELPLGLLFLFKQT------------KVGEFTPIIND 213

Query: 264 QKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
                   +  K          +K  ++ +    K E    +Y  KL++ A I +Y
Sbjct: 214 GLAYSMYYVARKDGSVYIPFEKVKNAIANKLAAQKREMILKDYFNKLKNRAYIKFY 269


>gi|315644371|ref|ZP_07897511.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus vortex
           V453]
 gi|315280248|gb|EFU43540.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus vortex
           V453]
          Length = 361

 Score = 74.7 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/306 (9%), Positives = 81/306 (26%), Gaps = 8/306 (2%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIV-SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
             FI  +T    + +        +  +   +S++     G  IT+ +      +++    
Sbjct: 10  KTFIVSITAVLSMSMIAACGNDKTEGAKEDNSKVIVKYKGGEITEKEFDLEQRMIQFMSP 69

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
                   + E      K+    +       +       + A +     ++       + 
Sbjct: 70  EYAQFLQ-MDEFKEYLAKQGVAYEYLYAKADDKAKEAAEKQADDLLKQQKNGMGEDQFKA 128

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
             +        +++    V+      K    E +I  +    K       +   ++    
Sbjct: 129 ALETQKLTEQDLKNYMLRVLTVMEHEKNQVSEEDIKKDFDANKKDYTNISVRHVLVSFKD 188

Query: 189 DNKLQNQG-FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF 246
                       K  K+ E    +        ++++         G  +        PQF
Sbjct: 189 AEGKDRPEGEALKIAKEVENKLNKGEDFAAVAKEYSQDPASKDKGGLIENKPAGSWVPQF 248

Query: 247 QNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEI---ALKAYLSAQNTPTKIEKHEA 302
           +        N  + P  T  G   + +  + ++  +      K  +  +    KI+    
Sbjct: 249 KEKALTLELNKISAPVETDYGYHVMKVEKREEVAYDKLPADQKEGILNELASAKIDNFMQ 308

Query: 303 EYVKKL 308
             +  L
Sbjct: 309 NELNDL 314


>gi|313672045|ref|YP_004050156.1| sura domain [Calditerrivibrio nitroreducens DSM 19672]
 gi|312938801|gb|ADR17993.1| SurA domain [Calditerrivibrio nitroreducens DSM 19672]
          Length = 298

 Score = 74.7 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/305 (9%), Positives = 84/305 (27%), Gaps = 22/305 (7%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDIS----KRIALL-------KLQKINGEL 72
           +  ++ IV      + +RI   +   +IT  ++      R+  +       K  +     
Sbjct: 1   MILLLTIVQQSRSEIINRILAVVGNNIITQYEVESFNPNRVKEIYSIQDEDKRSQAIKTY 60

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            K  +  L+ +   ++  +K  +               +   +S +D    L K+GI   
Sbjct: 61  YKNVLDFLVEQYTLEEIGKKYNVVVTEKEAEEAIDDIIKRNNISVKDLEEALAKEGITMA 120

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  + +  +   +            E +I     + +               + D   
Sbjct: 121 QYRWQIKMDILATRLKSRVINQLVVITENDIKKYVDEHQKEIGSYDEYELRYILLKDPSK 180

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
                            ++         +F+      + G   ++    L    +  +K 
Sbjct: 181 LT----------EVRKLIKEKGFIAAAIQFSEDKTGKNGGYLGFVNIEHLTKDIKEKVKD 230

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            +        +   V+   +   +         +  + A    T  +     +++K +  
Sbjct: 231 LKPKELVEIESGNEVKIFYVESIKSRYDLSKDQREKVIAALMDTMYKDVYKSWLEKNKEA 290

Query: 312 AIIHY 316
             I Y
Sbjct: 291 IFIRY 295


>gi|294338772|emb|CAZ87106.1| putative peptidyl-prolyl isomerase [Thiomonas sp. 3As]
          Length = 274

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/288 (10%), Positives = 82/288 (28%), Gaps = 46/288 (15%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKK 87
           + +    S A  +++   ++G  IT   + +  A+        ++ +  V++L  + L  
Sbjct: 11  LTLSLALSCAAQAQVVLRVDGHPIT---LEEAEAVNPQAADQPQVRQQVVEQLAQQQLLA 67

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
             ++                                           ++ L  Q++    
Sbjct: 68  DALKSVPPQA------------------------------QARIEAGQKNLRRQALAQLS 97

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
            +        + E    A ++ + ++  R+Y +R ++   P          ++  +  + 
Sbjct: 98  AEAFLQAHPISQEAIRQAYEKHIADLPTRQYWLRWIVVKTP----------EEAKRVLDA 147

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ-FQNLLKKSQNNTTNPYVTQKG 266
            R             +   +    G   +  E  +  +    + K        P    + 
Sbjct: 148 LRGGKQTFTALALHHSIGQNAELGGALGWQSEQAMSAEVLGVVRKLQPGQVAGPIALGEN 207

Query: 267 VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           +  I +  +R           L  Q      +     +V++L  NA I
Sbjct: 208 LAIIQLVAERTPP--KPDFEQLKPQIEQQLRQAALQAHVQELAKNAKI 253


>gi|228913728|ref|ZP_04077354.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228845920|gb|EEM90945.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 287

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/305 (11%), Positives = 89/305 (29%), Gaps = 46/305 (15%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S +I T+  G+ IT  +  +++          +  K 
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKIVTSKAGD-ITKDEFYEQMKT--------QAGKQ 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +++E +  +  +      D                   + F + L +QGI +   K
Sbjct: 52  VLNNMVMEKVLIKNYKVEDKEVDKKYD--------EMKKQYGDQFDTLLKQQGIKEETLK 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +  Q      ++     K      +       +                         
Sbjct: 104 TSVRAQLAQEKAIEKTITDKELKDNYKPEIKASHILVKD--------------------- 142

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              +   K  +E   +        ++++         G   +     +  +F++   K  
Sbjct: 143 ---EATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGAGKMVKEFEDAAYKLK 199

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
           ++  + P  +Q G   I + D ++        KA +  +    K +  +   + + K   
Sbjct: 200 KDEVSEPVKSQFGYHIIKVTDIKEPEKSFEQSKADIKKEIVQKKAQDGEFMNDLMMKEIK 259

Query: 311 NAIIH 315
            A + 
Sbjct: 260 KADVK 264


>gi|114321433|ref|YP_743116.1| hypothetical protein Mlg_2284 [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227827|gb|ABI57626.1| hypothetical protein Mlg_2284 [Alkalilimnicola ehrlichii MLHE-1]
          Length = 484

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/368 (9%), Positives = 95/368 (25%), Gaps = 59/368 (16%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + +++  ++       + + F +V   SY +     R+   + G  IT   +++R 
Sbjct: 1   MLEAIRSAVKGWVAWAVVIVISLPFIVVGGYSYFA-GDDGRVVAEVEGVEITREQVAERA 59

Query: 61  ALLKLQK------------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
              + Q                 L + A   LI E L    +    +      V     Q
Sbjct: 60  RQQQRQLEEFFGDLGAAGVDESTLRREARDGLIEEALLHVLVTDGNLRVGDRAVAQRIRQ 119

Query: 109 ---HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV------------------ 147
                +    S E +   L    +  + +++ +    +                      
Sbjct: 120 QDIFHQGGTFSMERYQQLLSANRLTPDQYEEMVRRDLLVEQFQRAVTGSALVRDWDTARL 179

Query: 148 -----VKNDFMLKYGNLEM------EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
                 + D      + +       +        +N        +  L  I  ++ +   
Sbjct: 180 AALDRQQRDIHYLVVSADEAPDAVSDAAVQAHYEENAERYTAPRQVRLEYIELHQDELAP 239

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES----------DLHPQF 246
               R  +  E    +  +     + A+ +  V +  + ++ E           ++    
Sbjct: 240 DDSTRFFELTEDAANVAYEDPDSLQSAADLLGVELSYSDWVPEDGSAEGLWGRPEVVEAA 299

Query: 247 QNLLKKSQNNTTNPYVTQKGV-EYIAICDKRDLGG--EIALKAYLSAQNTPTKIEKHEAE 303
            +         +       G    + + D R+        +   +  +    +       
Sbjct: 300 FSDDVLEFGYNSELIELGSGHALLLRVDDVREAEPLGLDEVADEIRRELAREQGRLQARN 359

Query: 304 YVKKLRSN 311
            + +L   
Sbjct: 360 -LGELLER 366


>gi|126699161|ref|YP_001088058.1| putative peptidyl-prolyl isomerase [Clostridium difficile 630]
 gi|255306527|ref|ZP_05350698.1| putative peptidyl-prolyl isomerase [Clostridium difficile ATCC
           43255]
 gi|115250598|emb|CAJ68422.1| putative peptidylprolyl isomerase [Clostridium difficile]
          Length = 318

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/340 (13%), Positives = 105/340 (30%), Gaps = 50/340 (14%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K++  +   + L+                       ++    +N   IT     K  
Sbjct: 1   MNKKLYIGMVGILSLMMVGC-------------------NKSLAKVNDVEITKEQYKKTK 41

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
           A+L        +   ++ EL     KK   +   +       N    Q A++ GL+    
Sbjct: 42  AVLSATNNY--INGQSLDELEKTLDKKGRNKLENVIISFMVDNELLYQEAKDKGLTPSKS 99

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKND------------------FMLKYGNLEME 162
                 Q + D         + +    V  D                  F  +    + +
Sbjct: 100 EVDSKYQELEDKMNLNTSYKEKMDKAGVDKDYLKQEISRDLAIDKNKKAFEDRINISDND 159

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQN------QGFVQKRIKDAEESRLRLPKDC 216
           + A     K     E +  + +     +K +       +  ++K+  +            
Sbjct: 160 MEAYYTSHKKDFNVEEVSASQILISTLDKNKKEVSKDKKEALKKKADNILTKIKNGESFE 219

Query: 217 NKLEKFASK-IHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICD 274
           +  +K++       + G+  Y  + D + +F + + K  +N  +N + T  G   + + D
Sbjct: 220 SLAKKYSDDKATGKNGGQLGYFTKDDKNAEFTKEVFKLKKNEVSNVFETSYGYHIVKVTD 279

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           KR+            +    + + +   E++KKL  +A I
Sbjct: 280 KRER---QKSFNECQSLIRESILNEKYIEHIKKLNEDAKI 316


>gi|77165248|ref|YP_343773.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus oceani
           ATCC 19707]
 gi|254434944|ref|ZP_05048452.1| PPIC-type PPIASE domain protein [Nitrosococcus oceani AFC27]
 gi|76883562|gb|ABA58243.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus oceani
           ATCC 19707]
 gi|207091277|gb|EDZ68548.1| PPIC-type PPIASE domain protein [Nitrosococcus oceani AFC27]
          Length = 640

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/208 (11%), Positives = 60/208 (28%), Gaps = 8/208 (3%)

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
           Y  V  A    +                  F+    ++  +  +  +         E  +
Sbjct: 193 YSIVPSATFRDVIEVSADKVRQYYDDHPEEFRIPEQVKVHYLRLTADSLATDIPLDEQTL 252

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK---LE 220
               ++ ++        R     I      ++   Q+  + AE    RL +  +     +
Sbjct: 253 RDFYEESEDQYRVPERRRASHILITVPPQGDEATRQQAQEKAEAVFERLQQGEDFEEVAK 312

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKR- 276
           + +         G   +     + P F+  +   +     + P +++ G   I + D   
Sbjct: 313 EVSDDPGSAQKGGDLGFFGRGVMDPAFEEAVFSLEETGALSEPVLSKFGYHIIKLTDIEA 372

Query: 277 -DLGGEIALKAYLSAQNTPTKIEKHEAE 303
            ++    A+   L+ +      E+   E
Sbjct: 373 GEVKPFEAVSEELAQRYRRQIAEEQFYE 400



 Score = 48.9 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/229 (10%), Positives = 62/229 (27%), Gaps = 15/229 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +          +    + I F +  I +Y      + +  ++NGE I+  +     
Sbjct: 1   MLEAIRNRAQGIFAWVIVGLIAIPFTLWGINNYMLDGGEA-LAASVNGEEISTREFRSAF 59

Query: 61  ALLKLQKI-------------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
                Q               +   ++  ++ L+ + L      K G+    ++++    
Sbjct: 60  LSYTQQLRFLMGASFPEEMLDDPATKQNVIEGLVEQRLVLDTAAKLGLGMSDSSLSQVIR 119

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML-KYGNLEMEIPAN 166
            +    G S +  S   +               +     + +      +      +    
Sbjct: 120 SNKAFQGESGQFDSQRYEAVLGSQGLTPVAYEARLRSALLSEQLVSTLRLSAFTTQQEVE 179

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
                    RE     V  +   + ++      ++  D      R+P+ 
Sbjct: 180 AIARLQQQKREIGYSIVPSATFRDVIEVSADKVRQYYDDHPEEFRIPEQ 228


>gi|89100857|ref|ZP_01173708.1| post-translocation molecular chaperone [Bacillus sp. NRRL B-14911]
 gi|89084443|gb|EAR63593.1| post-translocation molecular chaperone [Bacillus sp. NRRL B-14911]
          Length = 289

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/307 (10%), Positives = 90/307 (29%), Gaps = 37/307 (12%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K       +    I       +   SS +        IT  ++   +          ++
Sbjct: 1   MKKWMLSLSIAAGVIGLSACSSNAEDSSEVVVETKAGDITKDELYNAMK--------DKV 52

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            + A+QEL+ + +                +N    +  +  G + E   +          
Sbjct: 53  GEQAIQELVYKKVL-----SEKYKVTDEELNEKIDELKQQLGANFEMALA------QYGY 101

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             ++ L        + +   +      E E+       K      +++            
Sbjct: 102 EDEEDLKETFKTGLLQEKAAIKDVEATEKEVKEYYDNYKPEIKARHIL------------ 149

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK 251
                 +K  K+ ++      K  +   +++       + G   +     + P+F+    
Sbjct: 150 ---VEDEKTAKEVKKKLDEGAKFEDLATEYSQDPGSAANGGDLGWFGAGKMVPEFEEAAY 206

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE-KHEAEYVKKLR 309
               N  + P  T+ G   I   +K++      +K  +  +   +K++ +     + +  
Sbjct: 207 ALDVNEISEPVKTEHGYHIIQTTEKKEKKSFEEMKEKMEYEVKVSKLDGEKIQAAMDREL 266

Query: 310 SNAIIHY 316
            +A + +
Sbjct: 267 KDANVKF 273


>gi|163790772|ref|ZP_02185198.1| peptidylprolyl isomerase [Carnobacterium sp. AT7]
 gi|159873952|gb|EDP68030.1| peptidylprolyl isomerase [Carnobacterium sp. AT7]
          Length = 339

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/297 (9%), Positives = 74/297 (24%), Gaps = 35/297 (11%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELI 81
           L++     +  +     S     +     IT+ +    +           +    +Q+LI
Sbjct: 4   LLLATATILAGFTIAGCSDSTVASSTAGKITEEEFYAEMK--------DTVGSSMLQQLI 55

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
           +E +              +                    +   +   +   +  +     
Sbjct: 56  IEDVLTDLYGDKVTDKVVDKQYTTEETSM--------GGAEAFEYLMLQQGYTPEKYKDT 107

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
                +++     K    + EI              +++                  + +
Sbjct: 108 IRLNLLIEAAVKDKTKFTKEEIQTAYDAYVPSVKAAHIL---------------VEDEAK 152

Query: 202 IKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT-N 259
            KD               ++ +       + G+  +     +    +      +   T  
Sbjct: 153 AKDLIAQLNDGADFAKLAKENSADTATAANGGEVTFSSGEMVPEFEEAAYALKEGEMTTE 212

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI--EKHEAEYVKKLRSNAII 314
           P  T+ G   I + DK + G        +  Q   TK+    +  + +  +  +A I
Sbjct: 213 PVATEYGFHIIKMIDKPEKGTLKEETDTIKDQLLQTKLADSAYIQKVMSGIMKDANI 269


>gi|17989299|ref|NP_541932.1| peptidyl-prolyl cis-trans isomerase C [Brucella melitensis bv. 1
           str. 16M]
 gi|256043213|ref|ZP_05446151.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|260564427|ref|ZP_05834912.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 1 str. 16M]
 gi|265989641|ref|ZP_06102198.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|17985164|gb|AAL54196.1| peptidyl-prolyl cis-trans isomerase c [Brucella melitensis bv. 1
           str. 16M]
 gi|260152070|gb|EEW87163.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 1 str. 16M]
 gi|263000310|gb|EEZ13000.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 1 str. Rev.1]
          Length = 271

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/280 (10%), Positives = 78/280 (27%), Gaps = 40/280 (14%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             ++NG  I + DI         +     L   A    + E L ++              
Sbjct: 11  AVSVNGVTIDEADILTEAQNHPAENPGAALLSAARALAVRELLLQRAR------------ 58

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                ++ +   D   +      ++   V++ +  +       E
Sbjct: 59  ------------------EIGIEPEHEKDAEGRAETDEDALVRMVIEREVDV-PSASRDE 99

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE-- 220
                +  ++      ++      I  +    +     R      +   + +        
Sbjct: 100 AQRYYENNRHRFTSAPILEASHILIAADPADQETRDAARQTATRLAAAVIAEPATFASVA 159

Query: 221 -KFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN--PYVTQKGVEYIAICDKR- 276
            +++S       G    L      P+F+  L++     T   P  ++ G   + + D+R 
Sbjct: 160 LEYSSCPSGAQGGNLGQLTRGSTVPEFERALERMTPGETTANPIESRFGYHIVRL-DRRV 218

Query: 277 --DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             +      +   ++     +   K  ++Y+  L + A I
Sbjct: 219 EGEELPFDYVADKIAGWLEASTWSKAVSQYIAILAAEAEI 258


>gi|332878100|ref|ZP_08445830.1| PPIC-type PPIASE domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332684062|gb|EGJ56929.1| PPIC-type PPIASE domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 479

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/306 (9%), Positives = 76/306 (24%), Gaps = 50/306 (16%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +  ++  F          +  C + +        +  +   ING+ +   +         
Sbjct: 1   MMETMRKF---------ALWCCSLCLTGVLYAQGNDPVVMKINGKDVPRSEFE------- 44

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                   E +  ++ + E +      K  +    +          +      +      
Sbjct: 45  YNFNKNNGENVVDKKTVDEYVDLFVNYKLKVEAALDARYDTLSSFKKEFRTYRDQQI--- 101

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
                                      + +     E E+      MK     + LI    
Sbjct: 102 -------------------------RPYFVSVSAEEKELKRYYDGMKASIGPDGLIHPAH 136

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK----FASKIHDVSIGKAQ-YLLE 239
             I   +        K  +  +     L +  +         A K      G    +  +
Sbjct: 137 IMILVAQKATPEEQAKAKERIDSIYTALQQGADFATLAKQCSADKGSAARGGDLGGWFAK 196

Query: 240 SDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE 298
                +F+++    ++   + P+ +  G   + + D++ L     LK  L        ++
Sbjct: 197 GQTMKEFEDVAFSLNKGEMSKPFQSPMGYHIVLMKDRKQLESYEELKPQLQRFLESRGLK 256

Query: 299 KHEAEY 304
           +  A  
Sbjct: 257 ERVASM 262


>gi|206971674|ref|ZP_03232624.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus AH1134]
 gi|206733659|gb|EDZ50831.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus AH1134]
          Length = 283

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/309 (11%), Positives = 88/309 (28%), Gaps = 50/309 (16%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKINGELE 73
           +      +       +++  +   S  + T  +    +T+ ++SK    L+ Q     L 
Sbjct: 1   MKKKKIFIGTIISCMMLALSACGSSDNVVTSKVGN--VTEKELSKE---LRQQYGESTLY 55

Query: 74  KIAVQE-LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           ++ + + L+ +     E  K  +    + +   F       GL  ED             
Sbjct: 56  QMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED------------- 102

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             K+ +  +  +   +K     K      +       +                      
Sbjct: 103 ELKEKMKPEIAFEKAIKATVTDKDVKDNYKPEMKVSHILVKD------------------ 144

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK 251
                 +K  K+ +E            ++++         G+           +F+    
Sbjct: 145 ------EKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAY 198

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY----VK 306
           K      + P  T  G   I + DK++L     +K  +       +++    ++    V 
Sbjct: 199 KLDAGQVSEPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVN 258

Query: 307 KLRSNAIIH 315
            L  +A I 
Sbjct: 259 DLLKDADIK 267


>gi|261855012|ref|YP_003262295.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halothiobacillus
           neapolitanus c2]
 gi|261835481|gb|ACX95248.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halothiobacillus
           neapolitanus c2]
          Length = 645

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/250 (8%), Positives = 63/250 (25%), Gaps = 13/250 (5%)

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITF----DSNTVNYFFVQHARNTGLSAEDFSSFL 124
             ++    ++  I E+      E   I                +      ++A    +  
Sbjct: 154 KQDIVMQTLENAISESTIVTAPELDQIVKLRDQTREIGMVRLDRARVIDTVAAPTDGAIE 213

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
                    F +   ++  + ++            + ++             + +     
Sbjct: 214 AYYAAHKGEFIRPERVKLRYIELSPKTLAPSVKVTDAQVEQAYANYVKKQEAQVVRTVRH 273

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRL----PKDCNKLEKFASKI-HDVSIGKAQYLLE 239
             I   K  +   ++     A  +R  +        ++    +         G    +  
Sbjct: 274 ILISVPKNADGAAIEAAKNKALAARAAIVSGKTSFADEARAVSDDPGSKNKGGDLGEVAP 333

Query: 240 SDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE 298
             +   F+  +        + P  TQ G   I +   ++   +I   A +  +      E
Sbjct: 334 GQMVKPFEEAMDALKVGEVSEPVRTQFGWHLIEVT--KESHPDIKPLADMRDKMVAEVQE 391

Query: 299 KHEAE-YVKK 307
           +   + Y  +
Sbjct: 392 QQVEKIYYNE 401



 Score = 56.2 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/194 (9%), Positives = 57/194 (29%), Gaps = 17/194 (8%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +   +  +I       + I F +  +  Y S   +      ++G  I+     + +
Sbjct: 1   MLMDLRERIQGWIAYAIIGLISIPFVLWGVGEYFSGGKNQP-VAEVDGLPISQQAFEQAV 59

Query: 61  ALLKL-------------QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF- 106
           +  +                 +  L++  + ++I E + +  ++K+G       V     
Sbjct: 60  SQQRQAIIQKLGGSVSAEMLQSLNLDQQVLDQMINERVLRVFVQKAGFRAPDAVVADLIR 119

Query: 107 --VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
                  +     + + +F+  +G    +F+  L    +   +                 
Sbjct: 120 SEPAFKTDGAFDVKKYEAFVAARGTTVANFEAGLKQDIVMQTLENAISESTIVTAPELDQ 179

Query: 165 ANKQKMKNITVREY 178
             K + +   +   
Sbjct: 180 IVKLRDQTREIGMV 193


>gi|326317152|ref|YP_004234824.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323373988|gb|ADX46257.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 261

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/305 (14%), Positives = 92/305 (30%), Gaps = 49/305 (16%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--GELE 73
           +    +  +     + +    A++      +NG+ +    +      ++        E+E
Sbjct: 1   MKKKLLSGLVAAAVLGTSALPAIAQN-VAVVNGKAVPKERVEVLKQQVERSGRPITPEIE 59

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
               +E+I   +  QE +K G+    N  +                              
Sbjct: 60  GQIKEEVIAREIFLQEAQKRGLEGSQNVKDQ----------------------------- 90

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
               LA Q+I    +  D+       + EI A   K       +    + +    +++ +
Sbjct: 91  --MELARQTILIRELFADYQKANPVTDAEIQAEYDKYVAANTGKEYKASHILVETEDQAK 148

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLK 251
                 K          +  K  +  +K +         G   +   S    +F Q L+K
Sbjct: 149 AIIASIK----------KGAKFEDIAKKQSKDPGSGARGGDLDWATPSSYVAEFTQALVK 198

Query: 252 KSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
             +   T  P  TQ G   I + D R+          +  Q      ++  A++ + LR+
Sbjct: 199 LDKGKMTQTPVKTQFGWHVIRLDDVREAKL--PKLDEVKPQIAQQLQQQKLAKFQEDLRA 256

Query: 311 NAIIH 315
            A + 
Sbjct: 257 KAKVE 261


>gi|228958588|ref|ZP_04120307.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228801099|gb|EEM47997.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 293

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/308 (10%), Positives = 86/308 (27%), Gaps = 48/308 (15%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKINGELE 73
           L      +       +++  +   S  + T  +    +T+ ++SK    L+ Q     L 
Sbjct: 11  LKKKKIFIGTIISCVMLALSACGSSDNVVTSKVGN--VTEKELSKE---LRQQYGESTLY 65

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           ++ + + +++  K             +              +     S+        ++ 
Sbjct: 66  QMMLSKTLLDKYKV------------SDEEAKKKVEEAKDKMGENFKSTLEQLGLKNEDE 113

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
            K+ +  +  +   +K     K      +       +                       
Sbjct: 114 LKEKMKPEIAFEKAIKATVTDKDVKNNYKPEMKVSHILVKD------------------- 154

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK 252
                +K  K+ +E            ++++         G+           +F+    K
Sbjct: 155 -----EKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYK 209

Query: 253 -SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY----VKK 307
                 ++P  T  G   I + DK++L     +K  +       +++    ++    V  
Sbjct: 210 LDAGQVSDPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVND 269

Query: 308 LRSNAIIH 315
           L  +A I 
Sbjct: 270 LLKDADIK 277


>gi|255655579|ref|ZP_05400988.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-23m63]
 gi|296451569|ref|ZP_06893304.1| probable peptidyl-prolyl isomerase [Clostridium difficile NAP08]
 gi|296878826|ref|ZP_06902826.1| probable peptidyl-prolyl isomerase [Clostridium difficile NAP07]
 gi|296259634|gb|EFH06494.1| probable peptidyl-prolyl isomerase [Clostridium difficile NAP08]
 gi|296430098|gb|EFH15945.1| probable peptidyl-prolyl isomerase [Clostridium difficile NAP07]
          Length = 318

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/340 (13%), Positives = 104/340 (30%), Gaps = 50/340 (14%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K++  +   + L+                       ++    +N   IT     K  
Sbjct: 1   MNKKLYIGMVGILSLMMVGC-------------------NKSLAKVNDVEITKEQYKKTK 41

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
           A+L        +   ++ EL     KK   +   +       N    Q A++ GL+    
Sbjct: 42  AVLSATNNY--INGQSLDELEKTLDKKGRNKLENVIISFMVDNELLYQEAKDKGLTPSKS 99

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKND------------------FMLKYGNLEME 162
                 Q + D         + +    V  +                  F  +    + +
Sbjct: 100 EVDSKYQELEDKMNLNTSYKEKMDKAGVDKEYLKQEISRDLAIDKNKKAFEDRINISDND 159

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQN------QGFVQKRIKDAEESRLRLPKDC 216
           + A     K     E +  + +     +K +       +  ++K+  +            
Sbjct: 160 MEAYYTSHKKDFNVEEISASQILISTLDKNKKEVSKDKKEALKKKADNILTKIKNGESFE 219

Query: 217 NKLEKFASK-IHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICD 274
           +  +K++       + G+  Y  + D + +F + + K  +N  +  + T  G   + + D
Sbjct: 220 SLAKKYSDDKATGKNGGQLGYFSKDDKNAEFTKEVFKLKKNEVSKVFETSYGYHIVKVTD 279

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           KR+            +    + + +   E++KKL  +A I
Sbjct: 280 KRER---QKSFNECQSLIRESILNEKYIEHIKKLNEDAKI 316


>gi|170698305|ref|ZP_02889381.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria IOP40-10]
 gi|170136796|gb|EDT05048.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria IOP40-10]
          Length = 282

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/322 (11%), Positives = 80/322 (24%), Gaps = 57/322 (17%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMS-SRIRTTINGEVITDGDISKRIALLKLQK 67
           +      +     +     +P+ +    A   +    T+NG  ITD +++  +   K Q 
Sbjct: 1   MQMTFNRILIATAIAWQMALPVQAQAQSASLPAGSVATVNGTPITDAEVNAVLQASK-QP 59

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
              ++ +    +LI   L +Q  EK+                A                 
Sbjct: 60  DTPQIRQAIKNQLIARVLIQQAAEKAKYGDKPEVQAAMQAAKANAE-------------- 105

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
                               +K++                + + ++   E   R ++   
Sbjct: 106 ----------------AQLYLKDNIKPAPVTDAQVKARYDEIVGSLGKEEVKPRIIVVKD 149

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD------ 241
                     ++                     +++      + G+  ++          
Sbjct: 150 AATAATVLAQLKA-----------GQTFDALARQYSQAPSAGAGGELPWVSFKMPLVEGN 198

Query: 242 -----LHPQFQNLLKKSQNNTTNPYVTQKGV-EYIAICDKRD--LGGEIALKAYLSAQNT 293
                L          +   T +      G    + I  KR   +      ++ +  Q  
Sbjct: 199 TQGLPLPVAQAMTKLPAGGVTADFIPLGNGARAIVKIDAKRPTQVPAYDTAQSTIRQQLQ 258

Query: 294 PTKIEKHEAEYVKKLRSNAIIH 315
               EK  AE V  L  +A I 
Sbjct: 259 ALAFEKATAELVGGLLKDAKIQ 280


>gi|294627916|ref|ZP_06706495.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292597830|gb|EFF41988.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 656

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/147 (10%), Positives = 44/147 (29%), Gaps = 4/147 (2%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                +K + +   + L   +L S   +    +    K  K A E++          +  
Sbjct: 274 KRYEDEKARFVEPEQRLASHILISAGPDAAAQKAAEAKAAKLAAEAKQTGTDFAALAKAN 333

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           +       + G   ++ +  +   F++            P  ++ G   I + + +   G
Sbjct: 334 SQDPGSKDAGGDLGWVEKGTMVKPFEDALFSMKAGEVVGPIKSEFGYHVIQLREVKGGQG 393

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKK 307
           +      +  Q    +++    +    
Sbjct: 394 KS--FEQVRDQLAAEQLKADADKAFAD 418



 Score = 50.1 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 47/192 (24%), Gaps = 34/192 (17%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTI-------------- 46
           M  K+    S +I       ++I F  V   SY     ++     +              
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFLFVIDNSYLGGIGANN-VAKVQAPPTWWKSAPSWW 59

Query: 47  ------NGEVITDGDISKRIALLKLQKINGELEK-------------IAVQELIVETLKK 87
                     I+  D   R    ++Q+   + EK               + +L+ E + +
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQARMQERQRQGEKFDPRTFESRENKLQVLDQLVDEQVVR 119

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
              E +GI     TV  +                 +      G            +   +
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQVDGKFSPDQYRAALAQGTPPRTPAQFDALVSDSL 179

Query: 148 VKNDFMLKYGNL 159
            ++         
Sbjct: 180 QQSVIPQAVAES 191


>gi|189220090|ref|YP_001940730.1| Parvulin-like peptidyl-prolyl isomerase [Methylacidiphilum
           infernorum V4]
 gi|189186948|gb|ACD84133.1| Parvulin-like peptidyl-prolyl isomerase [Methylacidiphilum
           infernorum V4]
          Length = 283

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 88/289 (30%), Gaps = 44/289 (15%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
           + S      S ++   +NG  I    +   +    + K + +  + A+  L+ + +  QE
Sbjct: 29  LYSQGDLVESDQLLAIVNGVEIRKSYVLAELKKAGIVKPDSQAIQNALASLVQQEILYQE 88

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
             K  +      +                                 +    +++   VV+
Sbjct: 89  AMKLEMEKSKELLRAQ------------------------------EEFNRKALTELVVQ 118

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
                +  +         Q +K++   EY IR ++       L+    ++K         
Sbjct: 119 KKIRSQPPSEGELRLRYSQLLKSLPKEEYKIRHIVLPTRRKALEVMERLKK--------- 169

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH-PQFQNLLKKSQNNTTNPYVTQKGVE 268
                      +   K      G+  +  ++ L    +  + K        P ++  G E
Sbjct: 170 --GENFSLLAMESLEKQTADRGGELGWQNKATLVLSAYSLIQKLKPGQVGGPILSSMGWE 227

Query: 269 YIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            I +   R L         L  Q      +++  +YV++L +++ +  +
Sbjct: 228 LIELLAVRPLRV--PSYEELKPQLIQQIEQENLKKYVQELIASSRVQIF 274


>gi|62317782|ref|YP_223635.1| peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 1 str.
           9-941]
 gi|83269763|ref|YP_419054.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           biovar Abortus 2308]
 gi|189023035|ref|YP_001932776.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus
           S19]
 gi|237817322|ref|ZP_04596314.1| Chaperone surA precursor [Brucella abortus str. 2308 A]
 gi|254699074|ref|ZP_05160902.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           2 str. 86/8/59]
 gi|254732517|ref|ZP_05191095.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           4 str. 292]
 gi|260545017|ref|ZP_05820838.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus
           NCTC 8038]
 gi|260760321|ref|ZP_05872669.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           4 str. 292]
 gi|260763561|ref|ZP_05875893.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           2 str. 86/8/59]
 gi|62197975|gb|AAX76274.1| hypothetical peptidyl-prolyl cis-trans isomerase [Brucella abortus
           bv. 1 str. 9-941]
 gi|82940037|emb|CAJ13074.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           biovar Abortus 2308]
 gi|189021609|gb|ACD74330.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus
           S19]
 gi|237788135|gb|EEP62351.1| Chaperone surA precursor [Brucella abortus str. 2308 A]
 gi|260098288|gb|EEW82162.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus
           NCTC 8038]
 gi|260670639|gb|EEX57579.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           4 str. 292]
 gi|260673982|gb|EEX60803.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           2 str. 86/8/59]
          Length = 311

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/280 (10%), Positives = 78/280 (27%), Gaps = 40/280 (14%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             ++NG  I + DI         +     L   A    + E L ++              
Sbjct: 51  AVSVNGVTIDEADILTEAQNHPAENPGAALLSAARALAVRELLLQRAR------------ 98

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                ++ +   D   +      ++   V++ +  +       E
Sbjct: 99  ------------------EIGIEPEHEKDAEGRAETDEDALVRMVIEREVDV-PSASRDE 139

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE-- 220
                +  ++      ++      I  +    +     R      +   + +        
Sbjct: 140 AQRYYENNRHRFTSAPILEASHILIAADPADQETRDAARQTATRLAAAVIAEPATFASVA 199

Query: 221 -KFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN--PYVTQKGVEYIAICDKR- 276
            +++S       G    L      P+F+  L++     T   P  ++ G   + + D+R 
Sbjct: 200 LEYSSCPSGAQGGNLGQLTRGSTVPEFERALERMTPGETTANPIESRFGYHIVRL-DRRV 258

Query: 277 --DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             +      +   ++     +   K  ++Y+  L + A I
Sbjct: 259 EGEELPFDYVADKIAGWLEASTWSKAVSQYIAILAAEAEI 298


>gi|225686140|ref|YP_002734112.1| chaperone SurA [Brucella melitensis ATCC 23457]
 gi|254706164|ref|ZP_05167992.1| Chaperone surA precursor [Brucella pinnipedialis M163/99/10]
 gi|254711538|ref|ZP_05173349.1| Chaperone surA precursor [Brucella pinnipedialis B2/94]
 gi|256015078|ref|YP_003105087.1| peptidyl-prolyl cis-trans isomerase, putative [Brucella microti CCM
           4915]
 gi|256029827|ref|ZP_05443441.1| Chaperone surA precursor [Brucella pinnipedialis M292/94/1]
 gi|256059473|ref|ZP_05449675.1| Chaperone surA precursor [Brucella neotomae 5K33]
 gi|256111792|ref|ZP_05452763.1| Chaperone surA precursor [Brucella melitensis bv. 3 str. Ether]
 gi|256157997|ref|ZP_05455915.1| Chaperone surA precursor [Brucella ceti M490/95/1]
 gi|256253044|ref|ZP_05458580.1| Chaperone surA precursor [Brucella ceti B1/94]
 gi|256262736|ref|ZP_05465268.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 2 str. 63/9]
 gi|261220140|ref|ZP_05934421.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti B1/94]
 gi|261313606|ref|ZP_05952803.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
           pinnipedialis M163/99/10]
 gi|261319154|ref|ZP_05958351.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
           pinnipedialis B2/94]
 gi|261323445|ref|ZP_05962642.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella neotomae
           5K33]
 gi|265986843|ref|ZP_06099400.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
           pinnipedialis M292/94/1]
 gi|265993257|ref|ZP_06105814.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 3 str. Ether]
 gi|265996512|ref|ZP_06109069.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
           M490/95/1]
 gi|225642245|gb|ACO02158.1| Chaperone surA precursor [Brucella melitensis ATCC 23457]
 gi|255997738|gb|ACU49425.1| peptidyl-prolyl cis-trans isomerase, putative [Brucella microti CCM
           4915]
 gi|260918724|gb|EEX85377.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti B1/94]
 gi|261298377|gb|EEY01874.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
           pinnipedialis B2/94]
 gi|261299425|gb|EEY02922.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella neotomae
           5K33]
 gi|261302632|gb|EEY06129.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
           pinnipedialis M163/99/10]
 gi|262550809|gb|EEZ06970.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
           M490/95/1]
 gi|262764127|gb|EEZ10159.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 3 str. Ether]
 gi|263092541|gb|EEZ16776.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
           bv. 2 str. 63/9]
 gi|264659040|gb|EEZ29301.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
           pinnipedialis M292/94/1]
 gi|326410475|gb|ADZ67539.1| chaperone SurA [Brucella melitensis M28]
 gi|326553767|gb|ADZ88406.1| chaperone SurA [Brucella melitensis M5-90]
          Length = 311

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/280 (10%), Positives = 78/280 (27%), Gaps = 40/280 (14%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             ++NG  I + DI         +     L   A    + E L ++              
Sbjct: 51  AVSVNGVTIDEADILTEAQNHPAENPGAALLSAARALAVRELLLQRAR------------ 98

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                ++ +   D   +      ++   V++ +  +       E
Sbjct: 99  ------------------EIGIEPEHEKDAEGRAETDEDALVRMVIEREVDV-PSASRDE 139

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE-- 220
                +  ++      ++      I  +    +     R      +   + +        
Sbjct: 140 AQRYYENNRHRFTSAPILEASHILIAADPADQETRDAARQTATRLAAAVIAEPATFASVA 199

Query: 221 -KFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN--PYVTQKGVEYIAICDKR- 276
            +++S       G    L      P+F+  L++     T   P  ++ G   + + D+R 
Sbjct: 200 LEYSSCPSGAQGGNLGQLTRGSTVPEFERALERMTPGETTANPIESRFGYHIVRL-DRRV 258

Query: 277 --DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             +      +   ++     +   K  ++Y+  L + A I
Sbjct: 259 EGEELPFDYVADKIAGWLEASTWSKAVSQYIAILAAEAEI 298


>gi|254695417|ref|ZP_05157245.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           3 str. Tulya]
 gi|261215795|ref|ZP_05930076.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           3 str. Tulya]
 gi|260917402|gb|EEX84263.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
           3 str. Tulya]
          Length = 311

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/280 (10%), Positives = 78/280 (27%), Gaps = 40/280 (14%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             ++NG  I + DI         +     L   A    + E L ++              
Sbjct: 51  AVSVNGVTIDEADILTEAQNHPAENPGAALLSAARALAVRELLLQRAR------------ 98

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                ++ +   D   +      ++   V++ +  +       E
Sbjct: 99  ------------------EIGIEPEHEKDAEGRAETDEDALVRMVIEREVDV-PSASRDE 139

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE-- 220
                +  ++      ++      I  +    +     R      +   + +        
Sbjct: 140 AQRYYENNRHRFTSAPILEASHILIAADPADQETRDAARQTATRLAAAVIAEPATFASVA 199

Query: 221 -KFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN--PYVTQKGVEYIAICDKR- 276
            +++S       G    L      P+F+  L++     T   P  ++ G   + + D+R 
Sbjct: 200 LEYSSCPSGAQGGNLGQLTRGSTVPEFERALERMTPGETTANPIESRFGYHIVRL-DRRV 258

Query: 277 --DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             +      +   ++     +   K  ++Y+  L + A I
Sbjct: 259 EGEELPFDYVADKIAGWLEASTWSKAVSQYIAILAAEAEI 298


>gi|218896099|ref|YP_002444510.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus G9842]
 gi|228899723|ref|ZP_04063971.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 4222]
 gi|228906786|ref|ZP_04070655.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 200]
 gi|228964109|ref|ZP_04125234.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|218541193|gb|ACK93587.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus G9842]
 gi|228795596|gb|EEM43078.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228852790|gb|EEM97575.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 200]
 gi|228859905|gb|EEN04317.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 4222]
          Length = 289

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/304 (12%), Positives = 93/304 (30%), Gaps = 42/304 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S +I T+  G+ IT  +   ++          +  K 
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKIVTSKAGD-ITKEEFYDQMKT--------QAGKQ 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +++E +  +  +      D                   + F + + +QGI +   K
Sbjct: 52  VLNNMVMEKVLIKNYKVEDKDVDKKFD--------EMKKQYGDQFDTLMKQQGIKEETIK 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +  Q      V+     K    + E    + K  +I V++                  
Sbjct: 104 NSVRAQLAQEKAVEQSITDKDVKAKFEDYKKEIKASHILVKD------------------ 145

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              ++  K  ++   +        ++++         G   +     +  +F+   +K  
Sbjct: 146 ---EETAKKVKDELAQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGKMVKEFEEAAQKLK 202

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRSN 311
           ++  + P  TQ G   I + D          KA +       K +  +   + + K    
Sbjct: 203 KDEVSEPVKTQFGYHIIKVTDNHADATFDKSKADIKKSLAQEKTQDAQFMNDLMMKEIKK 262

Query: 312 AIIH 315
           A + 
Sbjct: 263 ADVK 266


>gi|315607433|ref|ZP_07882429.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae ATCC 33574]
 gi|315250865|gb|EFU30858.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae ATCC 33574]
          Length = 490

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/257 (11%), Positives = 71/257 (27%), Gaps = 15/257 (5%)

Query: 47  NGEVITDGDIS--KRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
             E I   D+   +   L +    +G+ +    +++ V+ L   +     I    + V  
Sbjct: 72  GDEPILKSDVEVMRLQGLAEGITFSGDPDCSIPEQIAVQKLFLHQAAIDSIEVSESEVAQ 131

Query: 105 FFVQHAR---NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
                         S E    +  +                +    ++   +        
Sbjct: 132 GIEGQINSWIQMTGSREKLEEYRKQSITQMRQQMHDDYRNRLLIQKMRMKLVEDVKVSPA 191

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           ++ A  + M   ++        +  +      +Q  + +   +      R+ K       
Sbjct: 192 QVRAYFRDMPADSLPFVPTEVEVEILTSQPKISQEEINRVKDELRNYTDRVNKGETTFST 251

Query: 222 FASKIHDVSI-----GKAQYLLESDLHPQFQNLLKKSQN--NTTNPYVTQKGVEYIAICD 274
            A    +        G+  Y     L P F N+     +    +    ++ G   I + D
Sbjct: 252 LARLYSEDPGTARMGGELDYTGRGMLDPAFANVAFNLTDPKKISKIVESEFGYHIIQLID 311

Query: 275 KRDLGGEIALKAYLSAQ 291
           KR   G+     ++  +
Sbjct: 312 KR---GDKIKVRHILRK 325


>gi|254699581|ref|ZP_05161409.1| Chaperone surA precursor [Brucella suis bv. 5 str. 513]
 gi|261750037|ref|ZP_05993746.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 5
           str. 513]
 gi|261739790|gb|EEY27716.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 5
           str. 513]
          Length = 311

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/280 (10%), Positives = 79/280 (28%), Gaps = 40/280 (14%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             ++NG  I + DI         +     L   A    + E L ++              
Sbjct: 51  AVSVNGVTIDEADILTEAQNHPAENPGAALLSAARALAVRELLLQRAR------------ 98

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                ++ +   D   +  +   ++   V++ +  +       E
Sbjct: 99  ------------------EIGIEPEHEKDAEGRAEIDEDALVRMVIEREVDV-PSASRDE 139

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE-- 220
                +  ++      ++      I  +    +     R      +   + +        
Sbjct: 140 AQRYYENNRHRFTSAPILEASHILIAADPADQETRDAARQTATRLAAAVIAEPATFASVA 199

Query: 221 -KFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN--PYVTQKGVEYIAICDKR- 276
            +++S       G    L      P+F+  L++     T   P  ++ G   + + D+R 
Sbjct: 200 LEYSSCPSGAQGGNLGQLTRGSTVPEFERALERMTPGETTANPIESRFGYHIVRL-DRRV 258

Query: 277 --DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             +      +   ++     +   K  ++Y+  L + A I
Sbjct: 259 EGEELPFDYVADKIAGWLEASTWSKAVSQYIAILAAEAEI 298


>gi|257460463|ref|ZP_05625564.1| foldase protein PrsA [Campylobacter gracilis RM3268]
 gi|257441794|gb|EEV16936.1| foldase protein PrsA [Campylobacter gracilis RM3268]
          Length = 269

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/299 (12%), Positives = 84/299 (28%), Gaps = 41/299 (13%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDIS---KRIALLKLQKINGELEKIAVQELI 81
                +    + ++++ +  T+NG+ +T+ +++   + I  + +  +N E +K  + + I
Sbjct: 4   VLFTALSLAAAISLNATVYATVNGKDVTEKELAPLLQGIGNVDIAALNAEQKKELIDKGI 63

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
              L   E +KSG                                        +  +   
Sbjct: 64  DLMLLTDEAKKSG-------------------------------VMDEDVYKKELEIVKD 92

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
           ++   V +     K    + EI     K K        I+     +      N    Q +
Sbjct: 93  NLALRVWQAKEASKINIDDKEIADFYNKNKARFTEPARIKAAQIVVKTEAEANDIIKQLK 152

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVS-IGKAQYLLESDLHPQFQNLLKKSQNNTT-N 259
                    +        +  +         G+  ++    + P    + K      T  
Sbjct: 153 GLSDSALFTKF---AELAKAKSIDPQAKQTSGELGWMPSDQVKPFADAISKIKDGQITTK 209

Query: 260 PYVTQKGVEYIAICD--KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
              ++ G   +   +   +    +   K ++       K  K   +    L  NA I Y
Sbjct: 210 AIRSRVGYHVVLKEESQAKKQLSQSEAKPFIERVLRQQKAAKVVEQKAADLHKNAKIEY 268


>gi|168702269|ref|ZP_02734546.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gemmata
           obscuriglobus UQM 2246]
          Length = 420

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/308 (11%), Positives = 85/308 (27%), Gaps = 32/308 (10%)

Query: 41  RIRTTIN-GEVITDGDI----SKRIALLKLQ------KINGELEKIAVQELIVETLKKQE 89
           +I   +    VITD ++     ++   L             E+    +++ I   L   E
Sbjct: 112 KIVARVGENNVITDQEVVEGVYQQFRELAALDGHARSAKQKEMYNQVLRKTIERELILDE 171

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLS-------------AEDFSSFLDKQGIGDNHFKQ 136
           +       +   +     + A  +                 E+F++ L  QG+     ++
Sbjct: 172 MYTKLKKANKMAIIDEVKELATQSIDRQLRMFRKDTGAKSEEEFAAILRTQGLTVPVIRR 231

Query: 137 YLAIQSIWPDVVKNDFMLKYGNL-EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
            +  Q +    V +    K       E+ A   +  +   R   +      I      N 
Sbjct: 232 QMERQFMAEQYVSSVLKEKSRRTGLAEVRAYYDQHPDEFRRPDRVVWQHLFIAVRNYPNA 291

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ---YLLESDLHPQFQNLLKK 252
                +     +             K+         G         E         +   
Sbjct: 292 QAAYNQAAALAQQANSGADLAELSMKYDEGFAKQQKG-LGAGEKRNEIQPADLEATVWSL 350

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGG---EIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
                +    T  G   + + ++   G    + AL++ +  + T  ++E    + V +L 
Sbjct: 351 QPGQVSGILQTPTGYHLVKVVERDMAGVQPFDAALQSKIRDKLTRAQMESEYQKLVDELW 410

Query: 310 SNAIIHYY 317
              ++  +
Sbjct: 411 RKGVVRVF 418


>gi|229587026|ref|YP_002845527.1| hypothetical protein RAF_ORF0929 [Rickettsia africae ESF-5]
 gi|228022076|gb|ACP53784.1| Unknown [Rickettsia africae ESF-5]
          Length = 295

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/303 (12%), Positives = 90/303 (29%), Gaps = 23/303 (7%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGELE 73
           L++   V      + A    I  ++N E IT  +   R  ++             + +L 
Sbjct: 4   LLLIITVFFTFNVAQASLPNIVASVNDEPITLNEFRARKKMIMALNNVESLTPAQDKQLS 63

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
            +A++ LI E+L  Q             +            +       +L  + +  + 
Sbjct: 64  DLALKSLIDESLLFQYAGDRE--IPQEEIENAIKSIEDRNKMPHGALLQYLKSRSVNPDS 121

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
           F   +  + I  +++ +           EI           V   +         +    
Sbjct: 122 FISQIKSELIKMNILSS-LSRSVQVSNKEIDVAILSSDQKDVEISMQVFTSKDGGNKAFT 180

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS 253
               ++ R+K   + +  L  +   ++    K+  +               +   +   +
Sbjct: 181 QMNNLKNRLKKCADVKKSLYDNFATMQIITDKLSKIEG------------VKQTIVKDLT 228

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            +  +N +      E   +C K+ L        Y+    T  KI +   +  + +R  A+
Sbjct: 229 PDKASNVFEVNNKFEITLVCSKKILNVNEDENNYVVNFLTNKKISQKAQKMFENMRKKAV 288

Query: 314 IHY 316
           I  
Sbjct: 289 IKI 291


>gi|30020404|ref|NP_832035.1| peptidylprolyl isomerase [Bacillus cereus ATCC 14579]
 gi|46396824|sp|Q81DT1|PRSA3_BACCR RecName: Full=Foldase protein prsA 3; Flags: Precursor
 gi|29895955|gb|AAP09236.1| Protein export protein prsA precursor [Bacillus cereus ATCC 14579]
          Length = 283

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/309 (11%), Positives = 88/309 (28%), Gaps = 50/309 (16%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKINGELE 73
           +      +       +++  +   S  + T  +    +T+ ++SK    L+ Q     L 
Sbjct: 1   MKKKKIFIGTIISCVMLALSACGSSDNVVTSKVGN--VTEKELSKE---LRQQYGESTLY 55

Query: 74  KIAVQE-LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           ++ + + L+ +     E  K  +    + +   F       GL  ED             
Sbjct: 56  QMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED------------- 102

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             K+ +  +  +   +K     K      +       +                      
Sbjct: 103 ELKEKMKPEIAFEKAIKATVTDKDVKNNYKPEMKVSHILVKD------------------ 144

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK 251
                 +K  K+ +E             +++         G+           +F+    
Sbjct: 145 ------EKTAKEIKEKVNNGEDFAALANQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAY 198

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY----VK 306
           K      ++P  T  G   I + DK++L     +K  +       +++    ++    V 
Sbjct: 199 KLDAGQVSDPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVN 258

Query: 307 KLRSNAIIH 315
            L  +A I 
Sbjct: 259 DLLKDADIK 267


>gi|228950070|ref|ZP_04112255.1| hypothetical protein bthur0007_61420 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228809597|gb|EEM56033.1| hypothetical protein bthur0007_61420 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 299

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/311 (12%), Positives = 95/311 (30%), Gaps = 37/311 (11%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +   +K L    + +             + S       +   I+  ++  R+        
Sbjct: 1   MKSSVKQLIMTGLAVGSLTFVSGCSLFDSDSVEYAAKTDSGTISKDELYNRMV------- 53

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             ++ +  + ++I  T+ +++ + S    D                L +E  +SF D   
Sbjct: 54  -DKIGQRTLDDMITLTVLQKKYKVSDGEIDDEIKR-----------LKSEFGNSFNDFLS 101

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
               + ++ L        + +   +      + ++ A          ++  IR     + 
Sbjct: 102 QNGVNNEEQLKDVIKLDKLKQKLALEHLKIQDKDLKALY------EQKKPEIRVSHILVS 155

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQ 247
           D  L      +                 +  ++F+         G   Y  E D+   FQ
Sbjct: 156 DETLAKDIKSK---------IDSGEDFGSLAKEFSQDIATKEKGGDIGYFKEGDMVQAFQ 206

Query: 248 NLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK-HEAEYV 305
           +  +K      + P  T  G   I + D++ L     +K  L ++    K+++      +
Sbjct: 207 DAARKLKVGEVSQPVKTDFGYHVIKLLDEKKLLSFEQMKPQLESELISNKMDQNKINAEI 266

Query: 306 KKLRSNAIIHY 316
           +KL     I  
Sbjct: 267 QKLLDKDNIKI 277


>gi|229109756|ref|ZP_04239342.1| Foldase protein prsA 1 [Bacillus cereus Rock1-15]
 gi|229144911|ref|ZP_04273308.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST24]
 gi|229150538|ref|ZP_04278754.1| Foldase protein prsA 1 [Bacillus cereus m1550]
 gi|228633031|gb|EEK89644.1| Foldase protein prsA 1 [Bacillus cereus m1550]
 gi|228638633|gb|EEK95066.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST24]
 gi|228673797|gb|EEL29055.1| Foldase protein prsA 1 [Bacillus cereus Rock1-15]
          Length = 293

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/309 (12%), Positives = 89/309 (28%), Gaps = 50/309 (16%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKINGELE 73
           L      +       +++  +   S  + T  +    +T+ ++SK    L+ Q     L 
Sbjct: 11  LKKKKIFIGTIISCVMLALSACGSSDNVVTSKVGN--VTEKELSKE---LRQQYGESTLY 65

Query: 74  KIAVQE-LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           ++ + + L+ +     E  K  +    + +   F       GL  ED             
Sbjct: 66  QMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED------------- 112

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             K+ +  +  +   +K     K      +       +                      
Sbjct: 113 ELKEKMKPEIAFEKAIKATVTDKDVKNNYKPEMKVSHILVKD------------------ 154

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK 251
                 +K  K+ +E            ++++         G+           +F+    
Sbjct: 155 ------EKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAY 208

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY----VK 306
           K      ++P  T  G   I + DK++L     +K  +       +++    ++    V 
Sbjct: 209 KLDAGQVSDPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVN 268

Query: 307 KLRSNAIIH 315
            L  +A I 
Sbjct: 269 DLLKDADIK 277


>gi|157374684|ref|YP_001473284.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sediminis
           HAW-EB3]
 gi|157317058|gb|ABV36156.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sediminis
           HAW-EB3]
          Length = 621

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/258 (8%), Positives = 56/258 (21%), Gaps = 7/258 (2%)

Query: 49  EVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV- 107
           + I    +  +    +         +  V  L+                   T +  +  
Sbjct: 139 QAILR-QLGYQANSFRDMMRTDMTRRQLVASLVGSEFVLPGEANYLADIQGQTRDIRYHW 197

Query: 108 -QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
              A     +                 F     +   + ++   D        + E    
Sbjct: 198 VDAAPFIAEAVVTDEQAKSYYDANLAQFMSPETLSLEYIELNAKDMAAGVTVSDEEAKTY 257

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
             + K   ++          +      +     K      + +           +     
Sbjct: 258 YDENKQQYLKAEKRLAAHILVSLGDDDSTA-KAKANAIYAKLQAGEEFSELAKAESEDTF 316

Query: 227 HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIA 283
                G+  +     + P F + L   S+   +    T  G   I + D +         
Sbjct: 317 SGEQGGQLDWFEPGVMEPAFDEVLYSLSKGEYSAVVKTSFGYHIIKLLDVQPAAEAAFED 376

Query: 284 LKAYLSAQNTPTKIEKHE 301
           +K+ + AQ    +     
Sbjct: 377 VKSKILAQLKEKQAVDQY 394



 Score = 67.4 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 64/238 (26%), Gaps = 19/238 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+       I       V++ F    + SY   +  +    T+NGE I++  + +  
Sbjct: 1   MLEKIREGSQGVIAKSILVLVILSFAFTGVSSYLGSSTEAA-AATVNGEEISESALEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     +++  ++ L+ E L  Q     G+      +  
Sbjct: 60  QNERARLEQQLGEMFAALSADERYLSSVKQSVLERLVAEKLLDQTATDLGLRVSDAQIKN 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
             +           D   +             +     +  D+ +   +      E  +P
Sbjct: 120 AIMTEPAFQTDGVFDNDRYQAILRQLGYQANSF--RDMMRTDMTRRQLVASLVGSEFVLP 177

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                + +I  +   IR           +     ++     + +  +         ++
Sbjct: 178 GEANYLADIQGQTRDIRYHWVDAAPFIAEAVVTDEQAKSYYDANLAQFMSPETLSLEY 235


>gi|163856532|ref|YP_001630830.1| peptidyl-prolyl cis-trans isomerase D [Bordetella petrii DSM 12804]
 gi|163260260|emb|CAP42562.1| peptidyl-prolyl cis-trans isomerase D [Bordetella petrii]
          Length = 653

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/212 (11%), Positives = 62/212 (29%), Gaps = 16/212 (7%)

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF--------MLKYGNLEMEIP 164
              +A D+ + +         +      Q   P+ V   +               E +I 
Sbjct: 193 RRFAAADYRAQVSVSPEDIQTWYDGNKQQLTVPEQVTAQYLVLDEAAATQGVQVKEEDIA 252

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA- 223
           +  ++ KN   +    R     I      ++   +     AE    +   D  +  + A 
Sbjct: 253 SYYEQNKNRFGQPERRRASHIMIELPAGASEDARKAAHAKAEALAKQAAADPAQFAELAR 312

Query: 224 ----SKIHDVSIGKAQYLLESDLH-PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
                       G   +L    L  P  +++   +++  +    +  G+  + + + +  
Sbjct: 313 ANSQDAGSAGKGGDLGWLAPGMLAGPLEKSVFGLAKDQVSGVVESPSGLHIVKVTEIQPA 372

Query: 279 --GGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
                  ++  ++A+          +E   KL
Sbjct: 373 AIKPLAEVRDEITAEIRKQIAATRFSEMATKL 404



 Score = 63.2 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 49/165 (29%), Gaps = 17/165 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKR- 59
           M   +      +++ +    ++  F +V I  Y+S+        T+ G+ IT  +     
Sbjct: 1   MFELLRNH-RRWMQFILLILIVPSFFLVGIQGYESFIRREPELATVAGQPITRSEFDMAH 59

Query: 60  ------------IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS---NTVNY 104
                                   + +  + +LI + L  Q    +  +           
Sbjct: 60  RNQLEQFRQRLGSQFDPALVDTPAMREQLLNQLIDQRLLAQVAIDNRFSVSDGTLRNTIA 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
              Q   N   S E +   L  QG+    F+  L        V++
Sbjct: 120 AIPQVQDNGRFSPERYRQVLAAQGMTPTSFEAGLRRDLAVGRVLE 164


>gi|104781902|ref|YP_608400.1| peptidylprolyl isomerase [Pseudomonas entomophila L48]
 gi|95110889|emb|CAK15605.1| putative Peptidylprolyl isomerase [Pseudomonas entomophila L48]
          Length = 318

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/240 (7%), Positives = 60/240 (25%), Gaps = 9/240 (3%)

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA--- 139
           E                           R        +     +  +     +       
Sbjct: 63  ELKALFAQLPEEARVSLRGDRPALEAWIRARLAEKALYQQAEAQGWLQRPDIQAQTRAAT 122

Query: 140 IQSIWPDVVKN--DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGF 197
            Q +  D +++       Y +      A +     + +      + +F   +N   ++  
Sbjct: 123 EQIVLRDYLESVSKVPDDYPSDAELKQAYEAGKAGLQLPARYRLSQIFLRVENPKDDEAV 182

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL-HPQFQNLLKKSQN 255
            ++    A++++           + +       + G       + L       + +    
Sbjct: 183 RKQAQALAKQAQASDADFAALAREHSQDAGTAANGGDTGLQALAQLLPEVRGVVSRLKAG 242

Query: 256 NTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             + P  +  G   + + +++         +   L       + E+    YV+ +  +A 
Sbjct: 243 TVSEPVQSAAGYHIVKLVEQQPARAATFDEVAPRLRQLLRAQRQEQVAKAYVEGMFDSAT 302


>gi|313204245|ref|YP_004042902.1| ppic-type peptidyL-prolyl cis-trans isomerase [Paludibacter
           propionicigenes WB4]
 gi|312443561|gb|ADQ79917.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paludibacter
           propionicigenes WB4]
          Length = 451

 Score = 74.3 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/256 (7%), Positives = 73/256 (28%), Gaps = 12/256 (4%)

Query: 33  YKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--GELEKIAVQELIVETLKKQEI 90
                +   +   I  E I   ++ ++    ++      G+   +  +++ ++ L   + 
Sbjct: 20  MAQKNVVDEVIWIIGDEAILKSEVEEQRLRAQIDNTPIDGDPYCVIPEQIAIQKLFLHQA 79

Query: 91  EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV-- 148
               +T + ++V     +                +   +     ++ L   +    ++  
Sbjct: 80  VLDSVTVNESSVINQVEKQLNYYESQIGSKEKVEEYFKMSTKELREQLREITRNQQIIQD 139

Query: 149 -KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
            +   +    +   ++    + +   ++        L  +          + +  +   +
Sbjct: 140 MQRKLVGDIKSTPSDVRRFMKDLPADSIPTVPAEVELQIVSFEPPVPVTEINRIKERLRD 199

Query: 208 SRLRLPKDCNKLEKFA-----SKIHDVSIGKAQYLLESDLHPQFQNLLKK--SQNNTTNP 260
              R+    +     A             G+  ++    L P+F  +          +  
Sbjct: 200 FTERVNSGSSDFSVLARLYSEDSESAKRGGELGFMGRGQLVPEFSAVAFNLLDPKKVSRI 259

Query: 261 YVTQKGVEYIAICDKR 276
             T+ G   I + +KR
Sbjct: 260 VQTEFGFHIIQLIEKR 275


>gi|237753051|ref|ZP_04583531.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375318|gb|EEO25409.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 284

 Score = 73.9 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/299 (13%), Positives = 93/299 (31%), Gaps = 28/299 (9%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQE 79
            ++    +       + ++ S I   +NG+ +T  ++       K Q+     + +AV  
Sbjct: 8   VLITSIILSVSAVSAAPSLVSGIAFFVNGDPVTLVEL------YKTQQREKVSQDVAVDR 61

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           LI E L ++EI+K  ++ +   +     + A+    + E    +++  G   N +K+ + 
Sbjct: 62  LINERLHEEEIKKRKLSVNDLEIEDEIRRVAKQNKTTLEKVRKYVEGNGGNWNTYKEDIK 121

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
            + +   + ++        ++ +                    V+     +    +  VQ
Sbjct: 122 KEILKRKLYQSITQESLKMVDNKEILEYYNANQREFLIPQSIDVVKFYSKDSTAIEHVVQ 181

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN 259
            R K    +     +                                 +  + +    T+
Sbjct: 182 SRGKSVAPNVKSENEVLQTAALN--------------------PQIVLSFAQGNVGGFTS 221

Query: 260 PYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            +          I  K +       + K     +    K      EY +KLRSNA ++ 
Sbjct: 222 IFPIGDDYVTFLIKGKHNPVLLPYESAKNIALQKIMQRKENYVIYEYFEKLRSNAKVNI 280


>gi|192360723|ref|YP_001982468.1| putative peptidyl-prolyl cis-trans isomerase D [Cellvibrio
           japonicus Ueda107]
 gi|190686888|gb|ACE84566.1| putative peptidyl-prolyl cis-trans isomerase D [Cellvibrio
           japonicus Ueda107]
          Length = 621

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 73/241 (30%), Gaps = 18/241 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +    I  +   F+++IF +  + S  +W  ++     +NGE IT  ++   I
Sbjct: 1   MLQSIRDNSKGVISYILIGFLVVIFALFGVESLFNWNPTANKVVEVNGEKITQVELQNAI 60

Query: 61  ALLKLQKIN-------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
           A  K Q +N               L K  +  LI   +  Q  +K+G+T  ++ +     
Sbjct: 61  ARQKQQMMNRYGDQVPSEFLSEDYLRKPVLDNLIQNQVLYQAAKKAGMTVGNDLITEQIS 120

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM-----LKYGNLEME 162
                   +    ++   +      +       Q     V+   +            E+E
Sbjct: 121 SAPVFKNEAGVFDNTRYRQALSMMGYTHATYTQQLAKDLVLNQLYTGLASSSFTTPNEIE 180

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                           L  + +        +       +   A  S  ++  D  +L   
Sbjct: 181 QLIALSYQTRDFSYFVLPSSKIKESVVVSDEEIADYYAKNPQAYTSEEQVAVDYIELSVD 240

Query: 223 A 223
           A
Sbjct: 241 A 241



 Score = 68.5 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/173 (11%), Positives = 48/173 (27%), Gaps = 4/173 (2%)

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
             V  +   L    L  +I  +++++     +               +  +    ++IK 
Sbjct: 228 EQVAVDYIELSVDALMADISISEEQLHKQYEQGLASFVAAPERHAAHILVENQDAEKIKA 287

Query: 205 AEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYV 262
             E            + ++  +      G   +        +F+           + P  
Sbjct: 288 VREKLAAGEDFAELAKTYSDDLGSKEQGGDLGFTKGDTFPAEFETALAGLKVGEVSAPVE 347

Query: 263 TQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           T  G  +I +  +R          KA L       + E      +++L+  A 
Sbjct: 348 TDAGTHFIKLLAERGSQAPSFEEQKASLEEHLKRAEAENIFVAKLEQLKELAF 400


>gi|325971259|ref|YP_004247450.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta sp.
           Buddy]
 gi|324026497|gb|ADY13256.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta sp.
           Buddy]
          Length = 348

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/345 (11%), Positives = 101/345 (29%), Gaps = 42/345 (12%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K       L++     + +    A ++ +R T     I+  ++   +A  +        
Sbjct: 1   MKRRAIVITLMLLVGFQLAAATIGAPAATVRLT-KTTPISMAELDAEVAEYQASAKAAGQ 59

Query: 73  EK------IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG------LSAEDF 120
           +         +  LI   L +Q   + G+    + ++  +     N        +S E F
Sbjct: 60  DPATIDPLQVLNLLINNELFRQGAARDGVKITDSMIDSAYASQKANLEASYNQVISDEQF 119

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKND----FMLKYGNLEMEIPANKQKMKNITVR 176
           +  +         +++ +  Q +    ++              E EI +  +K K   V 
Sbjct: 120 AEVITNNFGSVEAYRKMVGEQLMVDSYIRLKKADTLNTPVSITEAEISSFYRKNKTQFVS 179

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK--DCNKLEKFASKI-HDVSIGK 233
              ++     IP    Q      K   +   ++++         +  ++         G 
Sbjct: 180 PETVKLSHIYIPLTDDQTANAKNKATLEDVAAKIKAGTLTFEKAVVDYSQDPQSKSKAGD 239

Query: 234 AQYLLESDLHP-------QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG------- 279
             +L   +           F          T++   +  G   + I    +         
Sbjct: 240 IGWLTMDNADALSGLGDAFFDVAFTTEVGTTSSVVTSLTGYHILKILAYNETKILGLDEA 299

Query: 280 ----GEIALKAYLSAQNTPTKIEK----HEAEYVKKLRSNAIIHY 316
                   ++ Y+  + +  K ++         V +LR +A ++ 
Sbjct: 300 ISPNTTSTIRDYIKNELSSAKQQETYYKAINSLVDELRKSATVNI 344


>gi|320354707|ref|YP_004196046.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobulbus
           propionicus DSM 2032]
 gi|320123209|gb|ADW18755.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobulbus
           propionicus DSM 2032]
          Length = 626

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/170 (8%), Positives = 48/170 (28%), Gaps = 9/170 (5%)

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLF-SIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
             +  ++    +      T  +   R +LF     +  + +   +   +           
Sbjct: 246 VNDEAVQRYYQEHAELYATPEQRRARHILFKIADGDTAETKAAKKAAAEKVLAQIRGGGD 305

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAIC 273
                ++F+        G   +     +   F+  +        +    T  G   + + 
Sbjct: 306 FALLAKQFSEDTSKEKGGDLGFFSRGQMVEPFERSVFSLRTGEISGVVETPYGYHLVKLE 365

Query: 274 DKRDLG--GEIALKAYLSAQNTPT-----KIEKHEAEYVKKLRSNAIIHY 316
           + +         ++A + A+           +K    Y + +R+ ++  Y
Sbjct: 366 EIKPATTRSLEEVRASIRAELERQGVKAITFKKASTAYEEIIRAGSLTKY 415



 Score = 38.5 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 5/82 (6%)

Query: 238 LESDLHPQFQNLLKKSQNNTTNP---YVTQKGVEYIAICDKR--DLGGEIALKAYLSAQN 292
             + +  + +            P    V         I + R      + A +  L  Q 
Sbjct: 537 PANGVPEEIRRDAFARLGQGAFPDKVIVEGNTCYLYQILESRRGQGDTDAAKRQALEQQL 596

Query: 293 TPTKIEKHEAEYVKKLRSNAII 314
                    A+++ +LR  A I
Sbjct: 597 LAAHKNTLMADWIDQLRKEAKI 618


>gi|78066690|ref|YP_369459.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           383]
 gi|77967435|gb|ABB08815.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           383]
          Length = 644

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/273 (8%), Positives = 59/273 (21%), Gaps = 22/273 (8%)

Query: 53  DGDISKRIALLKLQ-KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
             D+ +   LL  Q     + ++     L ++ +    +  +                 R
Sbjct: 133 SIDVERYAQLLSFQGMTPEQYQERVRYSLSLQQIPASIVSSAFTPKSLAQRLSELAAQQR 192

Query: 112 NTGLSAEDFSSFLDKQGIGDNH---FKQYLAIQSIWPDVVKNDF--------MLKYGNLE 160
                    S F  K    D     +          P+     +               +
Sbjct: 193 EVQALVLKTSDFAAKVQPTDAQLAAYYDAHKQSFATPETATIQYLVYSPAAAAASAQPTD 252

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            +I             E  +R     I      +          AE+    +    ++  
Sbjct: 253 ADIKKFYDDNPTHFRTEAQVRVSHIFIAAPGSASAADKTAAKTKAEQLLADVKAHPDQFA 312

Query: 221 KFA-----SKIHDVSIGKAQYLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAI 272
           + A             G   ++                   Q + +    +  G   +  
Sbjct: 313 QVAQKSSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFALKQGDVSGVVQSDLGFHILKA 372

Query: 273 CDKRDL--GGEIALKAYLSAQNTPTKIEKHEAE 303
            + +         +K  ++A+       K   +
Sbjct: 373 TEVKPAAVKPFADVKDQIAAELKQQYASKAFTD 405



 Score = 45.1 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/211 (9%), Positives = 54/211 (25%), Gaps = 15/211 (7%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN-------------GELE 73
            V I  ++ +   S     +NG  IT  +          Q                 E  
Sbjct: 26  FVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAFRQQIDQARQALGGQFDIKMFDTPEHR 85

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV--QHARNTGLSAEDFSSFLDKQGIGD 131
           K  +  LI + +   E ++  +T   N V    +      +              Q +  
Sbjct: 86  KQVLDGLIQQRVLADETQRLHLTASDNAVRDALMSDPMIASLKKPDGSIDVERYAQLLSF 145

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                    + +   +          +      +  Q++  +  ++  ++ ++    D  
Sbjct: 146 QGMTPEQYQERVRYSLSLQQIPASIVSSAFTPKSLAQRLSELAAQQREVQALVLKTSDFA 205

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            + Q    +     +  +           ++
Sbjct: 206 AKVQPTDAQLAAYYDAHKQSFATPETATIQY 236


>gi|21241842|ref|NP_641424.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21107222|gb|AAM35960.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 656

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/147 (10%), Positives = 44/147 (29%), Gaps = 4/147 (2%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                +K + +   + L   +L S   +    +    K  K A E++          +  
Sbjct: 274 KRYEDEKARFVEPEQRLASHILISAGTDAAAQKAAEAKAAKLAAEAKQTGTDFAALAKAN 333

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           +       + G   ++ +  +   F++            P  ++ G   I + + +   G
Sbjct: 334 SQDPGSKDAGGDLGWVEKGTMVKPFEDALFSMKAGEVVGPIKSEFGYHVIQLREVKGGQG 393

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKK 307
           +      +  Q    +++    +    
Sbjct: 394 KS--FEQVRDQLAAEQLKADADKAFAD 418



 Score = 49.3 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 47/192 (24%), Gaps = 34/192 (17%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTI-------------- 46
           M  K+    S +I       ++I F  V   SY     ++     +              
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFLFVIDNSYLGGIGANN-VAKVQAPPAWWKSAPSWW 59

Query: 47  ------NGEVITDGDISKRIALLKLQKINGELEK-------------IAVQELIVETLKK 87
                     I+  D   R    ++Q+   + EK               + +L+ E + +
Sbjct: 60  PVSLLWQHHEISTQDFRTRFEQARMQERQRQGEKFDPRSFESRENKLQVLDQLVDEQVVR 119

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
              E +GI     TV  +                 +      G            +   +
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQVDGKFSPDQYRAALAQGTPPRTPAQFDALVRDSL 179

Query: 148 VKNDFMLKYGNL 159
            ++         
Sbjct: 180 QQSVIPQAVAES 191


>gi|319944662|ref|ZP_08018929.1| peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis ATCC
           51599]
 gi|319742101|gb|EFV94521.1| peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis ATCC
           51599]
          Length = 248

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/276 (9%), Positives = 71/276 (25%), Gaps = 47/276 (17%)

Query: 44  TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
             +NG  ITD +++  +   +          IA+                        + 
Sbjct: 3   IKVNGVEITDDEVAAELPFHQDTPQPLRSACIAL-----------------------ALK 39

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
              +  A   G    D     D                     ++     +   +     
Sbjct: 40  RVMLDEAAEQGHPVADAEEAADY--------------------LLSTQVTVPVVDEASCR 79

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
              +Q  +   V  ++    +    + +           +     +    +      + +
Sbjct: 80  RHYEQYPERFRVGGWVDADHILFAVNERTPLDALRLVAKETLALLQEHPERFEAMAAERS 139

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN--PYVTQKGVEYIAICDKRDLG-- 279
           +     + G    +   +  P+F+  L +    T       T+ G+  I +  + +    
Sbjct: 140 NCPSAENGGALGRMQRGETVPEFEAALWRIAPGTIADSLIETRYGLHIIRVNRRHEGQQL 199

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
               ++  ++   T    +    +YV+ L   A I 
Sbjct: 200 PFEQVQEGIAQALTAASRDAAWRQYVQVLLGRAKIE 235


>gi|157964821|ref|YP_001499645.1| hypothetical protein RMA_1057 [Rickettsia massiliae MTU5]
 gi|157844597|gb|ABV85098.1| hypothetical protein RMA_1057 [Rickettsia massiliae MTU5]
          Length = 303

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/303 (12%), Positives = 89/303 (29%), Gaps = 23/303 (7%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGELE 73
           L++   V      + A    I  ++N E IT  +   R  ++             + +L 
Sbjct: 12  LLLIITVFFTFNVAQASLPNIVASVNDEPITLNEFRARKKMIMALNNVESLTPAQDKQLS 71

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
            +A++ LI E+L  Q             ++           +       +L  + +  + 
Sbjct: 72  DLALKSLIDESLLFQYAGDRE--IPQEEIDNAIKSIEDRNKMPHGSLLQYLKSRSVNPDS 129

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
           F   +  + I  +++ +           EI           V   +         +    
Sbjct: 130 FISQIKSELIKMNIL-SILSRSVQVSNKEIDVAILSSDQKDVEISMQVFTSKDGSNKAFT 188

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS 253
               ++ R+K   + +     +   ++    K+  +               +   +   +
Sbjct: 189 QMNNLKNRLKKCADVKKSFYDNFATMQIITDKLSKIEG------------VKQTIVKDLT 236

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            +  +N +      E   +C K+ L        Y+    T  KI +   +  + +R  A 
Sbjct: 237 PDKASNVFEVNNKFEITLVCSKKILNVNEDENNYVVNFLTNKKISQKAQKMFENMRKKAA 296

Query: 314 IHY 316
           I  
Sbjct: 297 IKI 299


>gi|295132738|ref|YP_003583414.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zunongwangia
           profunda SM-A87]
 gi|294980753|gb|ADF51218.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zunongwangia
           profunda SM-A87]
          Length = 467

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/290 (12%), Positives = 84/290 (28%), Gaps = 15/290 (5%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKIN--GELEKIAVQELIVETLKKQEIEKSGITF 97
             I   I   +I D DI      ++ Q  +     +      L+   L   +  +  I  
Sbjct: 47  DGIAAVIGDYIILDSDIDLTRKDIQSQGNSTANVTDCQLAGSLMENKLYAHQAIQDSIIV 106

Query: 98  DSNTVNYFFVQHAR----NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
               +N +  Q         G   +    +         +    L  QS     ++   +
Sbjct: 107 PDAQINNYIDQQIAGMVRQLGSIEDVLEFYKRDSEAEFRNELFDLNKQSQLAQKMRQKII 166

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                   E+ A   ++   ++  +     +  I       +   QK I    + R  + 
Sbjct: 167 ENIEVTPEEVRAYFNEIPKDSLPVFGDEVEISEIVVKPEVPEEEKQKTIDRLNQFREDVL 226

Query: 214 KDCNKLEKFASKIHD--VSIGKAQ--YLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY 269
           ++ +K    A    D   + G        ++ +           +   + P+ T  G   
Sbjct: 227 ENGSKFATKAILYSDDTQTGGNILSLGRKDAFVKEFKDVAFSLREGEISEPFETTYGYHI 286

Query: 270 IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI---IHY 316
           I +   R    EI ++  L   +      +   + + ++R   +   I +
Sbjct: 287 IQLVKVRGQ--EIDVRHILLIPDVNNAAVEKAKKEIDQVREKIVNGEIEF 334


>gi|229010444|ref|ZP_04167648.1| Foldase protein prsA 1 [Bacillus mycoides DSM 2048]
 gi|228750864|gb|EEM00686.1| Foldase protein prsA 1 [Bacillus mycoides DSM 2048]
          Length = 289

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/304 (11%), Positives = 92/304 (30%), Gaps = 42/304 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S +I T+  G+ IT  +   ++          +  K 
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKIVTSKAGD-ITKEEFYNQMKT--------QAGKQ 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +++E +  +  +      D                   + F + + +QG+ +   K
Sbjct: 52  VLNNMVMEKVLIKNYKVDEKEVDKKFD--------EMKKQVGDQFDTLMKQQGLKEETVK 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +         ++     K    + E    + K  +I V++                  
Sbjct: 104 NGVRASLAQEQAIEKAITDKDLKAKFEDYKQEIKASHILVKD------------------ 145

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKS 253
              ++  K  +E   +        +K++         G   +     +  +F +   K  
Sbjct: 146 ---EETAKKVKEELAQGKSFEELAKKYSEDPGSKEKGGDLGFFGPDKMVKEFDEAARKLK 202

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRSN 311
           ++  + P  TQ G   I + +          KA +  +    K +  +   + + K    
Sbjct: 203 KDEVSEPVKTQHGYHIIKVTETHADATFDKAKADIKKEVVQEKTQDAQFMNDLMMKEIKK 262

Query: 312 AIIH 315
           A + 
Sbjct: 263 ADVK 266


>gi|302345884|ref|YP_003814237.1| PPIC-type PPIASE domain protein [Prevotella melaninogenica ATCC
           25845]
 gi|302149581|gb|ADK95843.1| PPIC-type PPIASE domain protein [Prevotella melaninogenica ATCC
           25845]
          Length = 474

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/292 (7%), Positives = 78/292 (26%), Gaps = 34/292 (11%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           +I   + + +  ++  +     TING+ ++  +              G ++K +V E + 
Sbjct: 5   VILSALLLSTTMAYGQTDPTIMTINGQPVSRSEFEYSYN---KNNAEGVIDKKSVDEYVD 61

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
             +  +   ++ +    +T++ F  +                           +    Q 
Sbjct: 62  LFINYKLKVQAALDAHLDTLSSFKKEFLSYRNQQVRPTFITDADVEAEGRKLYREAQQQV 121

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
                                       +           ++    +   +     ++  
Sbjct: 122 ----------------------------EANGGMWNCAHILIGLYQNADKEAAEAAKQLA 153

Query: 203 KDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNP 260
                +           +K+++     ++ G+  +L +    P+F+           + P
Sbjct: 154 DSLYNALRGGADFAELAKKYSTDVNSAMNGGQLLHLQKGQTVPEFEKALFALKPGEISAP 213

Query: 261 YVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT-KIEKHEAEYVKKLRSN 311
            ++  G   I +  +        L+  +          E+   + +  +  +
Sbjct: 214 VLSPFGYHIIKMGGRESFPTYETLRPEIMQYIEMQGLREQIIDQKLDSIVES 265


>gi|152974625|ref|YP_001374142.1| peptidylprolyl isomerase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152023377|gb|ABS21147.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus cytotoxicus
           NVH 391-98]
          Length = 282

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/300 (13%), Positives = 92/300 (30%), Gaps = 44/300 (14%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
            ++      +++  +   S +I T+  G+ +T  ++   +          +  K  ++ +
Sbjct: 4   AMLALAATSVIALSACGSSDKIATSKAGD-VTKDELYASLK--------QQGGKQVLRNM 54

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           IVE        K  I            ++        + F + L +QGI +   K  +  
Sbjct: 55  IVE--------KVFIKNYKVDDKDVDKKYDEFKKQYGDQFDTLLKQQGIKEETLKTSVRA 106

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           Q      ++     +                    ++Y  + V       K +      K
Sbjct: 107 QLAQEKAIEKSITDE-----------------EAKKKYRDKRVFAKHILVKDEETAKKVK 149

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTT 258
                 E   +     +  ++++         G    L    L  +F++   K  ++  +
Sbjct: 150 ------EELGQGKSFEDLAKQYSEDPGSKEKGGDLGELKPGTLVKEFEDAAFKMKKDEVS 203

Query: 259 NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRSNAIIHY 316
            P  +  G   I + D +D       KA +  +    K++  +   E+  K    A +  
Sbjct: 204 EPVKSSFGYHIIKVTDIKDAKPFKEEKAAIKKEIAQQKLQDPQFLNEFQNKEVKKADVKI 263


>gi|228944771|ref|ZP_04107134.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228814799|gb|EEM61057.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 287

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/305 (11%), Positives = 89/305 (29%), Gaps = 46/305 (15%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S +I T+  G+ IT  +  +++          +  K 
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKIVTSKAGD-ITKDEFYEQMKT--------QAGKQ 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +++E +  +  +      D                   + F + L +QGI +   K
Sbjct: 52  VLNNMVMEKVLIKNYKVEDKEVDKKYD--------EMKKQYGDQFDTLLKQQGIKEETLK 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +  Q      ++     K      +       +                         
Sbjct: 104 TGVRAQLAQEKAIEKTITDKELKDNYKPEIKASHILVKD--------------------- 142

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              +   K  +E   +        ++++         G   +     +  +F++   K  
Sbjct: 143 ---EATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGAGKMVKEFEDAAYKLK 199

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
           ++  + P  +Q G   I + D ++        KA +  +    K +  +   + + K   
Sbjct: 200 KDEVSEPVKSQFGYHIIKVTDIKEPEKSFEQSKADIKKEVVAKKSQDGEFMNDLMMKEIK 259

Query: 311 NAIIH 315
            A + 
Sbjct: 260 KADVK 264


>gi|229195349|ref|ZP_04322120.1| Foldase protein prsA 1 [Bacillus cereus m1293]
 gi|228588123|gb|EEK46170.1| Foldase protein prsA 1 [Bacillus cereus m1293]
          Length = 287

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/305 (11%), Positives = 88/305 (28%), Gaps = 46/305 (15%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S +I T+  G+ IT  +  +++          +  K 
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKIVTSKAGD-ITKEEFYEQMKT--------QAGKQ 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +++E +  +  +      D                   + F + L +QGI +   K
Sbjct: 52  VLNNMVMEKVLIKNYKVEDKEVDKKFD--------EMKKQYGDQFDTLLKQQGIKEETLK 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +  Q      ++     K      +       +                         
Sbjct: 104 TGVRAQLAQEKAIEKTITDKELKDNYKPEIKASHILVKD--------------------- 142

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              +   K  +E   +        ++++         G   +     +  +F+    K  
Sbjct: 143 ---EATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGKMVKEFEEAAYKLK 199

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
           ++  + P  +Q G   I + D ++        KA +  +    K +  +   + + K   
Sbjct: 200 KDEVSEPVKSQFGYHIIKVTDIKEPEKSFEQSKADIKKEIVQKKSQDGEFMNDLMMKEIK 259

Query: 311 NAIIH 315
            A + 
Sbjct: 260 KADVK 264


>gi|157828877|ref|YP_001495119.1| hypothetical protein A1G_05640 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933604|ref|YP_001650393.1| hypothetical protein RrIowa_1217 [Rickettsia rickettsii str. Iowa]
 gi|157801358|gb|ABV76611.1| hypothetical protein A1G_05640 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908691|gb|ABY72987.1| hypothetical protein RrIowa_1217 [Rickettsia rickettsii str. Iowa]
          Length = 295

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/303 (12%), Positives = 89/303 (29%), Gaps = 23/303 (7%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGELE 73
           L++   V      + A    I  ++N E IT  +   R  ++             + +L 
Sbjct: 4   LLLIITVFFTFNVAQASLPNIVASVNDEPITLNEFRARKKMIMALNNVASLTPAQDKQLS 63

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
            +A++ LI E+L  Q             +            +       +L  + +  + 
Sbjct: 64  DLALKSLIDESLLFQYAGDRE--IPQEEIENAIKSIEDRNKMPHGSLLQYLKSRSVNPDS 121

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
           F   +  + I  +++ +           EI           V   +         +    
Sbjct: 122 FISQIKSELIKMNILSS-LSRSVQVSNKEIDVAILSSDQKDVEISMQVFTSKDGGNKAFT 180

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS 253
               ++ R+K   + +  L  +   ++    K+  +               +   +   +
Sbjct: 181 QMNNLKNRLKKCADVKKSLYDNFATMQIITDKLSKIEG------------VKQTIVKDLT 228

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            +  +N +      E   +C K+ L        Y+    T  KI +   +  + +R  A 
Sbjct: 229 PDKASNVFEVNNKFEITLVCSKKILNVNEDENNYVVNFLTNKKISQKAQKMFENMRKKAA 288

Query: 314 IHY 316
           I  
Sbjct: 289 IKI 291


>gi|332141514|ref|YP_004427252.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551536|gb|AEA98254.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 565

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/266 (8%), Positives = 60/266 (22%), Gaps = 11/266 (4%)

Query: 54  GDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
             ++     L+ Q    +L                E+E++           + +  +   
Sbjct: 82  FQVADFRDYLRTQMTQNQLAAALTNS---SFALDGEVEQANALQRQTRNAKYVLVSSDEF 138

Query: 114 GLSAE-DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
             S E   +            F     ++  +  +   D   +    E  +         
Sbjct: 139 ADSIEVTDADIEAFYNNNIASFDTEEQVKLAYVKLSVEDLKGRVSVDEDSVRTYYDNNLG 198

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSI 231
               E   R     I      +    +                    E  +       + 
Sbjct: 199 SYGTEEQRRVSHILIEAGDDTDAAKAKAESLK--AEIDSGADFAALAEANSDDTFSAENG 256

Query: 232 GKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAY 287
           G   ++    + P F       ++  + ++   T+ G   I + + ++        +   
Sbjct: 257 GDLDFITPEMMDPAFDEAAFSLENVGDVSDVVETEFGYHIIKLTEVKEAQVKSFDEVAGE 316

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAI 313
           +          +   E    L   A 
Sbjct: 317 IRDTLLYDAAMEKYFELQNTLAEIAF 342


>gi|197124849|ref|YP_002136800.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           K]
 gi|196174698|gb|ACG75671.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           K]
          Length = 354

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/314 (12%), Positives = 94/314 (29%), Gaps = 33/314 (10%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA----LLKLQK 67
            ++ +    ++ +         K    S     T NG  IT G++  R+      ++ + 
Sbjct: 1   MLRRIVLLGLVALAATACQPGSKDSKKSGPAVATGNGFTITAGEMKARLDEQSPFIRARY 60

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
              E +K  +  LI   +  +E E+ G+  D +          +         ++    +
Sbjct: 61  STLERKKEFLDNLIRFEVLAREAERQGLANDPDVQLTLKKVMVQKLVQKNFQDANGAAAE 120

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
            + +   ++Y                      E +    + +   +    +         
Sbjct: 121 AMPEADLQKYY--------------------DEHKAEYYRPRRVRLAAVVWNAPAGSPER 160

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
                  +  + K   + +++ L   +  N+  + A      + G   +    DL   + 
Sbjct: 161 AAKVALAKKALAKLKAEEKKNTLAFAQLVNEFSEDA--ASKATAGDLGFKSREDLEKAYS 218

Query: 248 NLL-----KKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKH 300
                         T+    T   V  +    ++D        +KA +  +    K  K 
Sbjct: 219 KEFADVTFNLQPGATSGVLETANAVYLVKGTGEQDELNRTFEQVKAQIQTKLYREKKTKE 278

Query: 301 EAEYVKKLRSNAII 314
              ++KKLR +A +
Sbjct: 279 FDGWLKKLRDDAKV 292


>gi|229028826|ref|ZP_04184927.1| Foldase protein prsA 1 [Bacillus cereus AH1271]
 gi|228732397|gb|EEL83278.1| Foldase protein prsA 1 [Bacillus cereus AH1271]
          Length = 288

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/306 (10%), Positives = 89/306 (29%), Gaps = 46/306 (15%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +      L    ++ + +  + + S +I T+  G+ IT  +  +++          +  K
Sbjct: 1   MKKAMLALAATSVIALSACGTGSSSDKIVTSKAGD-ITKEEFYEQMKT--------QAGK 51

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             +  +++E +  +  +      D                   + F + L +QGI +   
Sbjct: 52  QVLNNMVMEKVLIKNYKVDDKEVDKKYD--------EMKKQYGDQFDTLLKQQGIKEETL 103

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
           K  +  Q      ++     K      +       +                        
Sbjct: 104 KTGVRAQLAQEKAIEKTITDKELKDNYKPEIKASHILVKD-------------------- 143

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK- 252
               +   K  +E   +        ++++         G   +     +  +F++   K 
Sbjct: 144 ----EATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFSSGKMVKEFEDAAYKL 199

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIE--KHEAEYVKKLR 309
            ++  + P  +Q G   I + D ++        K  +  +    K +  +   + + K  
Sbjct: 200 KKDEVSEPVKSQFGYHIIKVTDIKEPEKSFEQSKDDIKKEIVQKKAQDGEFMNDLMMKEI 259

Query: 310 SNAIIH 315
             A + 
Sbjct: 260 KKADVK 265


>gi|291482444|dbj|BAI83519.1| hypothetical protein BSNT_00126 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 297

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/319 (11%), Positives = 95/319 (29%), Gaps = 36/319 (11%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIV-SYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
             S + +  +L    V  I     +  S    + S     TI G+ +T  +  K +    
Sbjct: 1   MKSRTIWTIILGALLVCCIAVAYTLTKSQTGASSSGESIATIGGKSVTREEWLKEM---- 56

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                 +  K  ++++I   + +Q  +K+ +    + V+  F+          ED     
Sbjct: 57  ----EDQYGKSTLEDMINVRVVEQLAKKNNLKISKSEVDREFLLIKAVNNSFYEDE---- 108

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
                  +  ++    Q  +  +++            E+ +   K K +   +   R   
Sbjct: 109 -------HTTEKEWKDQIRYNILLEELLTRDIDISNKELESFYNKNKELYQFDDSYRIRH 161

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL-- 242
             + D +   +   +         +     +    E+   +      G   ++ E+    
Sbjct: 162 IVVKDEEEAREVLKE--------LKGGSSFEAVAAERSTDRYTSPYGGDLGFVTEASDNI 213

Query: 243 -HPQFQNLLKKSQNNTT-NPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIE 298
                +      ++  +  P     G   I + +K          +K  +  Q    ++ 
Sbjct: 214 PSAYIEEAKTLKEDEWSQEPIKVNNGYAIIQLKEKLKARTFSFDEVKDQIRRQIAMDQLG 273

Query: 299 KHEAEYVKKLRSNAIIHYY 317
                 VK L   A + ++
Sbjct: 274 DKAT--VKTLWKEADVSWF 290


>gi|94984847|ref|YP_604211.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
           geothermalis DSM 11300]
 gi|94555128|gb|ABF45042.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
           geothermalis DSM 11300]
          Length = 345

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/290 (6%), Positives = 66/290 (22%), Gaps = 28/290 (9%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGE--------------LEKIAVQELIVETL 85
             +   +  E  T  D  +       + +N +                   + +   +  
Sbjct: 56  QTVVAQVGNETYTLADFDRAFRQAVARVLNAQGVPYTPDLLAEFAEARPDFLTQFARDRA 115

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
             Q   ++        ++    +  +     A+   +        +  F+  L  Q++  
Sbjct: 116 VYQLARRTT-QVKPADIDAQVAEARKGFSSDADFQQALQASGYENEAEFRADLERQAVVQ 174

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
             + +    +    +  + +     +    R                      Q   +  
Sbjct: 175 AYLDS-IKSRLTFGDALVQSFYNLNRAAFNRPAQACVKHIL---------VKTQAEAQGV 224

Query: 206 EESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQ 264
                         ++ +         G    L   +    F  +   +  N      T+
Sbjct: 225 LRDLQGGADFAQLAQQKSQDPGSAADGGDLGCLSPGETVAAFDKVAFSAPLNQPQVVQTE 284

Query: 265 KGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            G   + +  + + G      + ++             +Y+    +   I
Sbjct: 285 YGWHVLVVTKRSEAGV--PPLSEVAPLIREQLARDAAQKYLDAQIARLNI 332


>gi|238650989|ref|YP_002916845.1| hypothetical protein RPR_06330 [Rickettsia peacockii str. Rustic]
 gi|238625087|gb|ACR47793.1| hypothetical protein RPR_06330 [Rickettsia peacockii str. Rustic]
          Length = 295

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/303 (12%), Positives = 88/303 (29%), Gaps = 23/303 (7%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGELE 73
           L++   V      + A    I  ++N E IT  +   R  ++             + +L 
Sbjct: 4   LLLIITVFFTFNVAQASLPNIVASVNDEPITLNEFRARKKMIMALNNVESLTPAQDKQLS 63

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
            + ++ LI E+L  Q             +            +       +L  + +  + 
Sbjct: 64  DLVLKSLIDESLLFQYAGDRE--IPQEEIENAIKSIEDRNKMPHGSLLQYLKSRSVNPDS 121

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
           F   +  + I  +++ +           EI           V   +         +    
Sbjct: 122 FISQIKSELIKMNILSS-LSRSVQVSNKEIDVAILSSDQKDVEISMQVFTSKDGGNKAFT 180

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS 253
               ++ R+K   + +  L  +   ++    K+  +               +   +   +
Sbjct: 181 QMNNLKNRLKKCADVKKSLYDNFATMQIITDKLSKIEG------------VKQTIVKDLT 228

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            +  +N +      E   +C K+ L        Y+    T  KI +   +  + +R  A 
Sbjct: 229 PDKASNVFEVNNKFEITLVCSKKILNVNEDENNYVVNFLTNKKISQKAQKMFENMRKKAA 288

Query: 314 IHY 316
           I  
Sbjct: 289 IKI 291


>gi|228952655|ref|ZP_04114731.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|229079483|ref|ZP_04212023.1| Foldase protein prsA 1 [Bacillus cereus Rock4-2]
 gi|229178680|ref|ZP_04306044.1| Foldase protein prsA 1 [Bacillus cereus 172560W]
 gi|228604838|gb|EEK62295.1| Foldase protein prsA 1 [Bacillus cereus 172560W]
 gi|228703853|gb|EEL56299.1| Foldase protein prsA 1 [Bacillus cereus Rock4-2]
 gi|228807121|gb|EEM53664.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 293

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/309 (12%), Positives = 88/309 (28%), Gaps = 50/309 (16%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKINGELE 73
           L      +       +++  +   S  + T  +    +T+ ++SK    L+ Q     L 
Sbjct: 11  LKKKKIFIGTIISCMMLALSACGSSDNVVTSKVGN--VTEKELSKE---LRQQYGESTLY 65

Query: 74  KIAVQE-LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           ++ + + L+ +     E  K  +    + +   F       GL  ED             
Sbjct: 66  QMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED------------- 112

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             K+ +  +  +   +K     K      +       +                      
Sbjct: 113 ELKEKMKPEIAFEKAIKATVTDKDVKDNYKPEMKVSHILVKD------------------ 154

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK 251
                 +K  K+ +E            ++++         G+           +F+    
Sbjct: 155 ------EKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAY 208

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY----VK 306
           K      + P  T  G   I + DK++L     +K  +       +++    ++    V 
Sbjct: 209 KLDAGQVSEPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVN 268

Query: 307 KLRSNAIIH 315
            L  +A I 
Sbjct: 269 DLLKDADIK 277


>gi|218128451|ref|ZP_03457255.1| hypothetical protein BACEGG_00019 [Bacteroides eggerthii DSM 20697]
 gi|217989342|gb|EEC55655.1| hypothetical protein BACEGG_00019 [Bacteroides eggerthii DSM 20697]
          Length = 557

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/307 (11%), Positives = 92/307 (29%), Gaps = 39/307 (12%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
           F  +  F K++     L +  +   + +  +A    +   ING+ +   +          
Sbjct: 32  FDFVRFFKKVIMIKSCLTVIFLW--LGWNVFAQQDPVLMRINGKDVLRSEFEYSYNR--- 86

Query: 66  QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
                            ++L   +    G   +        V  A   G           
Sbjct: 87  ----------------DKSLLALKHATPGKYVEHFVNFKLKVGDAEAAG----------- 119

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
                D  F     +++    +VK+                 +   +    +  +R +  
Sbjct: 120 ----LDTAFAFREEVENYRARLVKSYLTDTIEADAAARRWYDRMKAHHRGGQVRVRHIFK 175

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ 245
            +P N   +         D+    LR     N  +    +  D       ++    +  +
Sbjct: 176 YLPQNVSGDALRDAVARMDSIYEYLRKNPGDNAFDACVERFSDDK-RSL-WVSWLQMPVE 233

Query: 246 FQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
           F+++  +      +  + T +G+  + + ++R+L     +K  + A+ +  + ++     
Sbjct: 234 FEDVAFELPVGGVSQSFFTPQGIHIVKVLERRELPPFEKVKDEIMARQSRHEADRGVEVQ 293

Query: 305 VKKLRSN 311
           V+KL+  
Sbjct: 294 VEKLKKE 300


>gi|157826081|ref|YP_001493801.1| hypothetical protein A1C_05205 [Rickettsia akari str. Hartford]
 gi|157800039|gb|ABV75293.1| hypothetical protein A1C_05205 [Rickettsia akari str. Hartford]
          Length = 296

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 93/304 (30%), Gaps = 23/304 (7%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGEL 72
           +++I   V      + A    I  ++N E IT  +   R  ++             + +L
Sbjct: 4   LILIIITVFFTFNVAQASLPNIVASVNDEPITLNEFRARKKMIMALNNVDGLTPSQDKQL 63

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
             +A++ LI E+L  Q             ++           +       +L+ + +  N
Sbjct: 64  SDLAIKSLIDESLLFQYAGDRE--IPQEEIDNAIKSIEDRNKMPQGSLLQYLESRSVNPN 121

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            F   +  + I  +++ +           EI A         V   +             
Sbjct: 122 SFIAQIKSELIKMNILSS-LSRSVQVSNKEIDAAILSSDQKDVEISMQVFTSQDSSKKAF 180

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
                ++ R+K   + +  L  +   +E    K+  +               +   +   
Sbjct: 181 TQMHHLKNRLKKCSDVKKSLYDNFATMEIITDKLSKIEG------------VKQTIVKDL 228

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
           S +  +N +      E I +C K+ L        Y+    T  KI +   +  + +R  A
Sbjct: 229 SSDKASNVFEVNNKFEIILVCSKKILNVNEDENNYVVNFLTNKKISQKAQKMFENMRKKA 288

Query: 313 IIHY 316
            I  
Sbjct: 289 AIKI 292


>gi|15892946|ref|NP_360660.1| hypothetical protein RC1023 [Rickettsia conorii str. Malish 7]
 gi|34581354|ref|ZP_00142834.1| hypothetical protein [Rickettsia sibirica 246]
 gi|81527992|sp|Q92GU9|Y1023_RICCN RecName: Full=Uncharacterized protein RC1023; Flags: Precursor
 gi|15620140|gb|AAL03561.1| unknown [Rickettsia conorii str. Malish 7]
 gi|28262739|gb|EAA26243.1| unknown [Rickettsia sibirica 246]
          Length = 295

 Score = 73.9 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/303 (12%), Positives = 89/303 (29%), Gaps = 23/303 (7%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGELE 73
           L++   V      + A    I  ++N E IT  +   R  ++             + +L 
Sbjct: 4   LLLIITVFFTFNVAQASLPNIVASVNDEPITLNEFRARKKMIMALNNVESLTPAQDKQLS 63

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
            +A++ LI E+L  Q             +            +       +L  + +  + 
Sbjct: 64  DLALKSLIDESLLFQYAGDRE--IPQEEIENAIKSIEDRNKMPHGSLLQYLKSRSVNPDS 121

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
           F   +  + I  +++ +           EI           V   +         +    
Sbjct: 122 FISQIKSELIKMNILSS-LSRSVQVSNKEIDVAILSSDQKDVEISMQVFTSKDGGNKAFT 180

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS 253
               ++ R+K   + +  L  +   ++    K+  +               +   +   +
Sbjct: 181 QMNNLKNRLKKCADVKKSLYDNFATMQIITDKLSKIEG------------VKQTIVKDLT 228

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            +  +N +      E   +C K+ L        Y+    T  KI +   +  + +R  A 
Sbjct: 229 PDKASNVFEVNNKFEITLVCSKKILNVNEDENNYVVNFLTNKKISQKAQKMFENMRKKAA 288

Query: 314 IHY 316
           I  
Sbjct: 289 IKI 291


>gi|268680813|ref|YP_003305244.1| hypothetical protein Sdel_2197 [Sulfurospirillum deleyianum DSM
           6946]
 gi|268618844|gb|ACZ13209.1| conserved hypothetical protein [Sulfurospirillum deleyianum DSM
           6946]
          Length = 283

 Score = 73.6 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/306 (16%), Positives = 108/306 (35%), Gaps = 31/306 (10%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K+       +      + S  +      I   IN E IT  D+ K      L       
Sbjct: 1   MKIKLKVLTFVTLGATLLFSPANAGTVDGISLIINKEPITLYDVFKYSQRFNLS------ 54

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +K A+  L+ + L++ EI+K GI+ ++  V+ +    A N  ++  DF + +  + +   
Sbjct: 55  KKDALDILVRQKLEEAEIKKLGISVENYEVDQYIETLATNNNMNTTDFLAMIRSKNVDVF 114

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGN-LEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
            +K+ L  +     + +     K     + E+ A   +  +   +       +++     
Sbjct: 115 EYKEELTNKLKRDKLYRKIISNKLQQISDGELKAYYDENLHEFSQANGFDVTIYTSA--- 171

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
                       + E          +  +    K      GK    L + L+        
Sbjct: 172 ------------NQESLISLKKNPMSTFKDVELKEGSFQAGKMDANLATLLNK------- 212

Query: 252 KSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
            + ++ ++   + +      + +K +         K Y+ A+ +  K +K   EY +KL+
Sbjct: 213 TATSSFSSIVKSDQNYVMFFVKNKHNAQTVAFDDAKNYIHAKLSEGKEQKAIEEYFEKLK 272

Query: 310 SNAIIH 315
           S+A I 
Sbjct: 273 SSANIK 278


>gi|167465135|ref|ZP_02330224.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase
           [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 246

 Score = 73.6 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/254 (9%), Positives = 67/254 (26%), Gaps = 24/254 (9%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
            +  V+++ C V      + + +  +   I    I  GD+         Q +        
Sbjct: 14  LSLAVVVLVCFVIFGFTGAASGNGTVVAEIGKTKIRKGDLE--------QNLITHYGSSV 65

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           + +++     K E + +G+      ++       +    + E    F           +Q
Sbjct: 66  LNQMLDREAIKMEAQSAGLQISDADIDKELKVMMQ----AYESEEVFYQSMKEQLGMSRQ 121

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
            +     +  +++          + EI    Q       ++  +     +    +  N+ 
Sbjct: 122 EVKDDVYYKLLLEKVATKDIQVSDSEIQDYIQAHPEEYAKKREMHLRRVTTKTREQANKV 181

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD---LHPQFQNLLKKS 253
                         +           +   +  + G   ++ E D        +      
Sbjct: 182 VAA---------FSKGDDFAKLARDRSIDDYANNGGDLGWVKEDDPLTDKQVMKQAKDLK 232

Query: 254 QNNTTNPYVTQKGV 267
               + P  T +G 
Sbjct: 233 VGQISKPVQTNEGY 246


>gi|46198541|ref|YP_004208.1| peptidyl-prolyl cis-trans isomerase [Thermus thermophilus HB27]
 gi|46196163|gb|AAS80581.1| probable peptidyl-prolyl cis-trans isomerase [Thermus thermophilus
           HB27]
          Length = 337

 Score = 73.6 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/317 (9%), Positives = 70/317 (22%), Gaps = 29/317 (9%)

Query: 8   SLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL---- 63
            +  F + +  + +      + ++          +   +  E IT      R  L     
Sbjct: 17  RMRSFTRSMLAWGMRAFLLALTLLLVPMALAQGEVVAQVGPEAITREAFELRYGLFVRSA 76

Query: 64  ----------KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
                     + + +        ++ L  E    Q   K G+  D   V           
Sbjct: 77  LAQLGLPDTEEARALLAAYRPAFLEALAREKALLQRARKEGLYPDPAAVEARVHALKEAF 136

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
                   +       G   +++ +A       + +  +  +       + A        
Sbjct: 137 PEEEALEEALRQAGVPGLEAYRRLVAEAMALEAL-EARYRSRLAVSRAALKALWLLSPEY 195

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIG 232
                     L      + +          +A     R           +         G
Sbjct: 196 RHPTLYCARHLLVPTREEAE----------EARLRLARGEAFAEVARAVSQDPGSKEEGG 245

Query: 233 KAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ 291
                 E    P F+   ++      + P  T+ G   I +   R +          +  
Sbjct: 246 DLGCAPEGTYVPAFEEALVRLRPGEVSGPVRTEFGYHLILLE--RVVPPGRYPLEEAAPL 303

Query: 292 NTPTKIEKHEAEYVKKL 308
                 ++      + L
Sbjct: 304 LEKEVADRAWERLEEAL 320


>gi|298206780|ref|YP_003714959.1| putative exported peptidyl-prolyl cis-trans isomerase [Croceibacter
           atlanticus HTCC2559]
 gi|83849412|gb|EAP87280.1| putative exported peptidyl-prolyl cis-trans isomerase [Croceibacter
           atlanticus HTCC2559]
          Length = 496

 Score = 73.6 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/254 (11%), Positives = 67/254 (26%), Gaps = 12/254 (4%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQ--KINGELEKIAVQELIVETLKKQEIEKSGITF 97
             +   +   V+ D DI K    LK Q   +          +L+ + L         I  
Sbjct: 73  DGVAAVVGEYVVLDSDIDKAYIELKSQGISVQDITRCNLTGKLLEDKLYAHHAVIDSIMV 132

Query: 98  D----SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
           +    +  V+       R  G   +  + +              +  Q+     ++   +
Sbjct: 133 NDAEVNAYVDQQIDYMKRQLGTMEKVLNFYQKDNEGEFRAELFEINKQNKLAGEMQRSIV 192

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                   E+      +       +     +  I       Q   Q+ I    E R  + 
Sbjct: 193 DGIEITPEEVREYFNGIPKEDRPLFGDEIEIAQIIIQPEIPQAERQRVIDRLNEMRRDVL 252

Query: 214 KDCNKLEKFA-----SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGV 267
            +       A           + G+     +     +F++      +   + P+ T+ G 
Sbjct: 253 DNGASFATKAVLYSQDTGSRANGGQYSLTRKDPFVKEFKDAAFSLQEGEISEPFETEFGF 312

Query: 268 EYIAICDKRDLGGE 281
             + +   R    +
Sbjct: 313 HILMVDKIRGQTVD 326


>gi|329894935|ref|ZP_08270734.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium
           IMCC3088]
 gi|328922664|gb|EGG29999.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium
           IMCC3088]
          Length = 624

 Score = 73.6 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/401 (10%), Positives = 101/401 (25%), Gaps = 92/401 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  S    +  +    +++ F +  + S             +NG+ I   ++ +  
Sbjct: 1   MLQDIRNSTQGPVFKVIVGLIVLSFALFGVESILLGGSDDS-VALVNGDKIRAVEVQQAA 59

Query: 61  ALLKLQ-------------KINGELEKIAVQELIVETLKKQEIEK---SGITFDSNTVNY 104
              K Q               + +L   A++ L+   L++Q  E    +           
Sbjct: 60  NRQKQQIAAMLGENFDPSLIDDAQLSARALEGLVGNKLQQQWAESLGLTASDVQLGAQVA 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV----------------- 147
                  +   SAE +   L   G     F++ L +  I   +                 
Sbjct: 120 AIPAFQIDGKFSAELYKQSLAAAGFTPLTFREALRVDEIVKQLNGGLLASEFVTGAEARA 179

Query: 148 ----------------VKNDFMLKYGNLEMEIPANKQKMKNIT----------------- 174
                             + F       + +I A                          
Sbjct: 180 LARVNGETRSVRYAKVAGDRFQNTVEITQDQIQAYYDSNAAQFVSEEAVVLDYITLRADD 239

Query: 175 ----------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
                        Y      ++  D    +   + +   +A+E+  +  +          
Sbjct: 240 FVEPVAEADLRAAYEQEISSYAYQDEARVSHILLIQGDDEADEAYAQRIQSAQTALTDGE 299

Query: 225 KIH------------DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                              G   Y        + +  +K    N  + P +T  G   I 
Sbjct: 300 AFSVVAERLSDDIGSSSDGGDLGYTAGDVFPAEMEEAIKGLDINEVSGPVLTDAGTHLIT 359

Query: 272 ICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
           + D+R  +    + +++ L A  +    ++     V+ L+ 
Sbjct: 360 VTDRRSSEPPSFMEMRSELEASLSQADAQRRLVSQVEALKD 400


>gi|327541306|gb|EGF27848.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopirellula
           baltica WH47]
          Length = 350

 Score = 73.6 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 74/272 (27%), Gaps = 17/272 (6%)

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQ------EIEKSGITFDSNTVNYFFVQ-- 108
              +  +KL+     L +     ++ E    +        ++                  
Sbjct: 51  EDELHYVKLRMTRSLLVQTIQSRMLREAFLLEQVGTAAADKRREAEATMAAKARQMFYET 110

Query: 109 -----HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
                  +    S  +    L K+G      ++    Q +    +++           EI
Sbjct: 111 ELPGLMKKANVDSKAELDDLLRKEGSSLAFRQREFMDQMLGSLYIRSKVNKDPAVSLSEI 170

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
               Q+ ++    +   R    ++  +    +   + ++       L      +  +  +
Sbjct: 171 VRYYQEHQSKYEHKARARWEQLTVMFSNHATRDAARSKLSQMANEALYGGSMTSVAKAQS 230

Query: 224 SKIHDVSIGKAQYLLESDLHPQF--QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
            +    S G   +  +  L      Q +        ++          I + ++ D G  
Sbjct: 231 EEPFASSGGLHDWTNQGSLVSTILDQQIFSLPIGEMSDVIEDNDAYHVIRVLEREDAGVT 290

Query: 282 I--ALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
               L+  +S      KI   + E + ++R  
Sbjct: 291 PVGELQDDISDILRQQKIRADQEEVMVEVRQR 322


>gi|229190397|ref|ZP_04317398.1| Foldase protein prsA 1 [Bacillus cereus ATCC 10876]
 gi|228593181|gb|EEK50999.1| Foldase protein prsA 1 [Bacillus cereus ATCC 10876]
          Length = 293

 Score = 73.6 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/309 (12%), Positives = 88/309 (28%), Gaps = 50/309 (16%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKINGELE 73
           L      +       +++  +   S  + T  +    +T+ ++SK    L+ Q     L 
Sbjct: 11  LKKKKIFIGTIISCMMLALSACGSSDNVVTSKVGN--VTEKELSKE---LRQQYGESTLY 65

Query: 74  KIAVQE-LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           ++ + + L+ +     E  K  +    +     F       GL  ED             
Sbjct: 66  QMMLSKALLDKYKVSDEEAKKKVEEAKDKRGENFKSTLEQLGLKNED------------- 112

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             K+ +  +  + + +K     K      +       +                      
Sbjct: 113 ELKEKMKPEIAFEEAIKATVTDKDVKDNYKPEMKVSHILVKD------------------ 154

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK 251
                 +K  K+ +E            ++++         G+           +F+    
Sbjct: 155 ------EKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAY 208

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY----VK 306
           K      + P  T  G   I + DK++L     +K  +       +++    ++    V 
Sbjct: 209 KLDAGQVSEPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVN 268

Query: 307 KLRSNAIIH 315
            L  +A I 
Sbjct: 269 DLLKDADIK 277


>gi|220922111|ref|YP_002497412.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           nodulans ORS 2060]
 gi|219946717|gb|ACL57109.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           nodulans ORS 2060]
          Length = 277

 Score = 73.6 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 70/241 (29%), Gaps = 6/241 (2%)

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I   +  +E++               +       L+ E     +  +   D   ++    
Sbjct: 24  ISRAVISREVQNHPAPTPVAAWRAAALALVLREALAQEARRLGIRAEPATDAEGRRETEE 83

Query: 141 QSIWPDVVKND-FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
           ++    +V+ +  + +    E      + + +           +LF+   +        +
Sbjct: 84  EAGMRALVEREAVVPEPTEEECRRYYERNRARFRAPDLVEASHILFAARKDDATGYELAR 143

Query: 200 -KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT- 257
                     +             ++       G    +      P+F+  L   +    
Sbjct: 144 LNARTVVAMLKADPDTFEELARVHSACPSAELGGSLGQVTTGQTTPEFEAALLGMRPGET 203

Query: 258 -TNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            + P  T+ G   I +  + D       A++  ++   +     + +A+YV +L + A I
Sbjct: 204 SSEPVETRYGFHVIRLGRRIDGCTLPFEAVRQRIAEYLSEAVRRRAQAQYVARLLAQARI 263

Query: 315 H 315
            
Sbjct: 264 E 264


>gi|23500050|ref|NP_699490.1| peptidyl-prolyl cis-trans isomerase [Brucella suis 1330]
 gi|254702703|ref|ZP_05164531.1| peptidyl-prolyl cis-trans isomerase, putative [Brucella suis bv. 3
           str. 686]
 gi|261753291|ref|ZP_05997000.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 3
           str. 686]
 gi|23463639|gb|AAN33495.1| peptidyl-prolyl cis-trans isomerase, putative [Brucella suis 1330]
 gi|261743044|gb|EEY30970.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 3
           str. 686]
          Length = 311

 Score = 73.6 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/280 (10%), Positives = 78/280 (27%), Gaps = 40/280 (14%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             ++NG  I + DI         +     L   A    + E L ++              
Sbjct: 51  AVSVNGVTIDEADILTEAQNHPAENPGAALLSAARALAVRELLLQRAR------------ 98

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                ++ +   D   +      ++   V++ +  +       E
Sbjct: 99  ------------------EIGIEPEHEKDAEGRAETDEDALVRMVIEREVDV-PSASRDE 139

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE-- 220
                +  ++      ++      I  +    +     R      +   + +        
Sbjct: 140 AQRYYENNRHRFTSAPILEASHILIAADPADQETRDAARQTATRLAAAVIAEPATFASVA 199

Query: 221 -KFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN--PYVTQKGVEYIAICDKR- 276
            +++S       G    L      P+F+  L++     T   P  ++ G   + + D+R 
Sbjct: 200 LEYSSCPSGAQGGNLGQLTRGSTVPEFERALERMTPGETTANPIESRFGYHIVRL-DRRV 258

Query: 277 --DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             +      +   ++     +   K  ++Y+  L + A I
Sbjct: 259 EGEELPFDYVVDKIAGWLEASTWSKAVSQYIAILAAEAEI 298


>gi|326577521|gb|EGE27401.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis O35E]
          Length = 617

 Score = 73.6 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/396 (8%), Positives = 84/396 (21%), Gaps = 88/396 (22%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVIT----DGDIS 57
              +   L  +   L     LI    + + ++   A+       +  +V+       +++
Sbjct: 1   MENMRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHAIQPNELIKVGNQVVDVATFQAEVN 60

Query: 58  KRIALLKLQ------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
                L  Q           L+++ ++ L  + L + +    G+T     +      +  
Sbjct: 61  AERNALIEQGVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQHYEV 120

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFK------------------------------------ 135
                      F                                                
Sbjct: 121 FHDNGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSKLIDL 180

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ-- 193
           Q  A +         D++ +    + +I A   + ++  ++   +      +  N L   
Sbjct: 181 QLEAREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIELDPNVLSVG 240

Query: 194 -------------------------------NQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                                               Q R    +             +  
Sbjct: 241 TPTEQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEALAKAH 300

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKK----SQNNTTNPYVTQKGVEYIAICDKRDL 278
           +      + G       S        + +     S    + P  T  G     +      
Sbjct: 301 SDDPSGSNGGVIGSFNPSVFGEYAAGVEQALSGLSVGQISQPVQTGFGYHIFKVT---KA 357

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             +    A +  Q      +    +    L  +A I
Sbjct: 358 SNDTPNIASMRDQLMDRAAKLKRDQAFADL--SAKI 391


>gi|229069842|ref|ZP_04203124.1| Foldase protein prsA 1 [Bacillus cereus F65185]
 gi|228713245|gb|EEL65138.1| Foldase protein prsA 1 [Bacillus cereus F65185]
          Length = 293

 Score = 73.6 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/309 (12%), Positives = 87/309 (28%), Gaps = 50/309 (16%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKINGELE 73
           L      +       +++  +   S  + T  +    +T+ ++SK    L+ Q     L 
Sbjct: 11  LKKKKIFIGTIISCMMLALSACGSSDNVVTSKVGN--VTEKELSKE---LRQQYGESTLY 65

Query: 74  KIAVQE-LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           ++ + + L+ +     E  K  +    + +   F       GL  ED             
Sbjct: 66  QMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED------------- 112

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             K+ +  +  +   +K     K      +       +                      
Sbjct: 113 ELKEKMKPEIAFEKAIKATVTDKDVKDNYKPEMKVSHILVKD------------------ 154

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK 251
                 +K  K+ +E             +++         G+           +F+    
Sbjct: 155 ------EKTAKEIKEKVNNGEDFAALARQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAY 208

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY----VK 306
           K      + P  T  G   I + DK++L     +K  +       +++    ++    V 
Sbjct: 209 KLDAGQVSEPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVN 268

Query: 307 KLRSNAIIH 315
            L  +A I 
Sbjct: 269 DLLKDADIK 277


>gi|296112838|ref|YP_003626776.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis RH4]
 gi|295920532|gb|ADG60883.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis RH4]
 gi|326561505|gb|EGE11849.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis 46P47B1]
 gi|326567538|gb|EGE17653.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis BC1]
 gi|326571415|gb|EGE21430.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis BC7]
          Length = 617

 Score = 73.6 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/396 (8%), Positives = 85/396 (21%), Gaps = 88/396 (22%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVIT----DGDIS 57
              +   L  +   L     LI    + + ++   A+       +  +V+       +++
Sbjct: 1   MENMRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHAIQPNELIKVGNQVVDVATFQAEVN 60

Query: 58  KRIALLKLQ------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
                L  Q           L+++ ++ L  + L + +    G+T     +      +  
Sbjct: 61  AERNALIEQGVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQHYEV 120

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFK------------------------------------ 135
                      F                                                
Sbjct: 121 FHDNGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSKLIDL 180

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ-- 193
           Q  A +         D++ +    + +I A   + ++  ++   +      +  N L   
Sbjct: 181 QLEAREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIELDPNVLSVG 240

Query: 194 -------------------------------NQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                                               Q R    +             +  
Sbjct: 241 TPTEQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEALAKAH 300

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKK----SQNNTTNPYVTQKGVEYIAICDKRDL 278
           +      + G       S        + +     S    + P  T  G     +     +
Sbjct: 301 SDDPSGSNGGVIGSFNPSVFGEYAAGVEQALSGLSVGQISQPVQTGFGYHIFKVT---KV 357

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             +    A +  Q      +    +    L  +A I
Sbjct: 358 SNDTPNIASMRDQLMDRAAKLKRDQAFADL--SAKI 391


>gi|182679969|ref|YP_001834115.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182635852|gb|ACB96626.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 303

 Score = 73.6 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK------LQKINGELEKI 75
           L+    V  ++   +A+   I     G  ++  +I  RI LL       L K   +L + 
Sbjct: 6   LLSMIPVLSLTTPVFAVDDDIVGRAGGMDVSMKEIRARIDLLPETDRATLTKDPAQLTQF 65

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
               L    L ++  +                  A    L  +  +   D          
Sbjct: 66  VRGYLADRVLLREAHDTGFDQKTPIKARLDQAHDALLMELYLQSVTHVPDTYPTEAE--- 122

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
                       V+  +      L           +    + ++    +    D+K +++
Sbjct: 123 ------------VRAAYDANKSALIA-------PRRYQLAQIFIAAPKIDQTKDDKTKDE 163

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK-S 253
               +  +  ++ + +         +++         G+  +L E  L P+ +  +   +
Sbjct: 164 KTSARLDELMKKLQGKSGDFEVLAREYSDAKAEAAKGGEIGWLAEPSLMPEIRQAVSGLT 223

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS----AQNTPTKIEKHEAEYVKKLR 309
           +  TT P     G   + I D R+ G E      +      Q    ++      Y+  L 
Sbjct: 224 KGATTAPIRLNDGWHILHILDIREAGSEPLPFTEVKGPLAEQMRRQRLTNERQTYLTHLL 283

Query: 310 SN 311
             
Sbjct: 284 KQ 285


>gi|289668772|ref|ZP_06489847.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 656

 Score = 73.6 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 15/148 (10%), Positives = 47/148 (31%), Gaps = 4/148 (2%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
               ++K + +   + L   +L S   +    +    K  K A E++          +  
Sbjct: 274 KRYEEEKARFVEPDQRLASHILISAGSDAAAQKAAEAKAAKLAAEAKQPGADFAALAKAN 333

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           +       + G   ++ +  +   F++        +   P  ++ G   I + + +   G
Sbjct: 334 SQDPGSKNAGGDLGWVEKGAMVKPFEDALFSMKAGDVVGPIKSEFGYHVIQLREVKGGQG 393

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKKL 308
           +      +  Q    +++    +    +
Sbjct: 394 KS--FEQVRDQLAAEQLKADADKAFADI 419



 Score = 49.3 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 47/192 (24%), Gaps = 34/192 (17%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTI----N--------- 47
           M  K+    S +I       +++ F  V   SY     ++     +    N         
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMVPFLFVIDNSYLGGIGANN-VAKVQAPPNWWKSAPSWW 59

Query: 48  -------GEVITDGDISKRIALLKLQKINGELEK-------------IAVQELIVETLKK 87
                     I+  D   R    ++Q+   + E                + +L+ E + +
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQARMQERQRQGENFDPRTFESRENKLQVLDQLVDEQVVR 119

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
              E +GI     TV  +                 +      G            +   +
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIQAFQVDGKFSPDQYRAALAQGTPPRTPAQFDALVRDSL 179

Query: 148 VKNDFMLKYGNL 159
            ++         
Sbjct: 180 QQSVIPQAVAES 191


>gi|326566698|gb|EGE16837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis 103P14B1]
          Length = 617

 Score = 73.6 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/396 (8%), Positives = 85/396 (21%), Gaps = 88/396 (22%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVIT----DGDIS 57
              +   L  +   L     LI    + + ++   A+       +  +V+       +++
Sbjct: 1   MENMRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHAIQPNELIKVGNQVVDVATFQAEVN 60

Query: 58  KRIALLKLQ------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
                L  Q           L+++ ++ L  + L + +    G+T     +      +  
Sbjct: 61  AERNALIEQGVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQHYEV 120

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFK------------------------------------ 135
                      F                                                
Sbjct: 121 FHDNGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSKLIDL 180

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ-- 193
           Q  A +         D++ +    + +I A   + ++  ++   +      +  N L   
Sbjct: 181 QLEAREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIELDPNVLSVG 240

Query: 194 -------------------------------NQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                                               Q R    +             +  
Sbjct: 241 TPTEQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEALAKAH 300

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKK----SQNNTTNPYVTQKGVEYIAICDKRDL 278
           +      + G       S        + +     S    + P  T  G     +     +
Sbjct: 301 SDDPSGSNGGVIGSFNPSVFGEYAAGVEQALSGLSVGQISQPVQTGFGYHIFKVT---KV 357

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             +    A +  Q      +    +    L  +A I
Sbjct: 358 SNDTPNIASMRDQLMDRAAKLKRDQAFADL--SAKI 391


>gi|325927445|ref|ZP_08188692.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas perforans
           91-118]
 gi|325542195|gb|EGD13690.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas perforans
           91-118]
          Length = 656

 Score = 73.6 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/249 (8%), Positives = 68/249 (27%), Gaps = 5/249 (2%)

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
           AL++       + +   +        + E     +    +         A +T   ++  
Sbjct: 173 ALVRDSLQQSVIPQAVAESGFATKS-EFERLLKLMGETRDVELAMLPPPAADTAPVSDAQ 231

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
                     D    + + I+ +  +              +      +K + +   + L 
Sbjct: 232 IKQWYDGHAQDFRQPETVTIEYVELNAATMPPATAADEATLRKRYEDEKARFVEPEQRLA 291

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
             +L S   +    +    K  K A E++          +  +       + G   ++ +
Sbjct: 292 SHILISAGADAAAQKAAEAKAAKLAAEAKQPGADFAALAKANSQDPGSKDAGGDLGWVEK 351

Query: 240 SDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE 298
             +   F++            P  ++ G   I + + +   G+      +  Q    +++
Sbjct: 352 GTMVKPFEDALFSMKAGEVVGPIKSEFGYHVIQLREVKGGQGKS--FEQVRDQLAAEQLK 409

Query: 299 KHEAEYVKK 307
               +    
Sbjct: 410 ADADKAFAD 418



 Score = 49.7 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 57/236 (24%), Gaps = 34/236 (14%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTI-------------- 46
           M  K+    S +I       ++I F  V   SY     ++     +              
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFLFVIDNSYLGGIGANN-VAKVQAPPTWWKSAPSWW 59

Query: 47  ------NGEVITDGDISKRIALLKLQKINGELEK-------------IAVQELIVETLKK 87
                     I+  D   R    ++Q+   + EK               + +L+ E + +
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQARMQERQRQGEKFDPRTFESRENKLQVLDQLVDEQVVR 119

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
              E +GI     TV  +                 +      G            +   +
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQVDGKFSPDQYRAALAQGTPPRTPAQFDALVRDSL 179

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
            ++              +  +++  +      +   +   P          Q +  
Sbjct: 180 QQSVIPQAVAESGFATKSEFERLLKLMGETRDVELAMLPPPAADTAPVSDAQIKQW 235


>gi|289664180|ref|ZP_06485761.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 656

 Score = 73.6 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 15/148 (10%), Positives = 47/148 (31%), Gaps = 4/148 (2%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
               ++K + +   + L   +L S   +    +    K  K A E++          +  
Sbjct: 274 KRYEEEKARFVEPDQRLASHILISAGSDAAAQKAAEAKAAKLAAEAKQPGADFAALAKAN 333

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           +       + G   ++ +  +   F++        +   P  ++ G   I + + +   G
Sbjct: 334 SQDPGSKNAGGDLGWVEKGAMVKPFEDALFSMKAGDVVGPIKSEFGYHVIQLREVKGGQG 393

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKKL 308
           +      +  Q    +++    +    +
Sbjct: 394 KS--FEQVRDQLAAEQLKADADKAFADI 419



 Score = 49.3 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 47/192 (24%), Gaps = 34/192 (17%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTI----N--------- 47
           M  K+    S +I       +++ F  V   SY     ++     +    N         
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMVPFLFVIDNSYLGGIGANN-VAKVQAPPNWWKSAPSWW 59

Query: 48  -------GEVITDGDISKRIALLKLQKINGELEK-------------IAVQELIVETLKK 87
                     I+  D   R    ++Q+   + E                + +L+ E + +
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQARMQERQRQGENFDPRTFESRENKLQVLDQLVDEQVVR 119

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
              E +GI     TV  +                 +      G            +   +
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIQAFQVDGKFSPDQYRAALAQGTPPRTPAQFDALVRDSL 179

Query: 148 VKNDFMLKYGNL 159
            ++         
Sbjct: 180 QQSVIPQAVAES 191


>gi|229127713|ref|ZP_04256702.1| Foldase protein prsA 1 [Bacillus cereus BDRD-Cer4]
 gi|228655790|gb|EEL11639.1| Foldase protein prsA 1 [Bacillus cereus BDRD-Cer4]
          Length = 293

 Score = 73.6 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/309 (12%), Positives = 88/309 (28%), Gaps = 50/309 (16%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKINGELE 73
           L      +       +++  +   S  + T  +    +T+ ++SK    L+ Q     L 
Sbjct: 11  LKKKKIFIGTIISCVMLALSACGSSDNVVTSKVGN--VTEKELSKE---LRQQYGESTLY 65

Query: 74  KIAVQE-LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           ++ + + L+ +     E  K  +    + +   F       GL  ED             
Sbjct: 66  QMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED------------- 112

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             K+ +  +  +   +K     K      +       +                      
Sbjct: 113 ELKEKMKPEIAFEKAIKATVTDKDVKNNYKPEMKVSHILVKD------------------ 154

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK 251
                 +K  K+ +E             +++         G+           +F+    
Sbjct: 155 ------EKTAKEIKEKVNNGEDFAALANQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAY 208

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY----VK 306
           K      ++P  T  G   I + DK++L     +K  +       +++    ++    V 
Sbjct: 209 KLDAGQVSDPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVN 268

Query: 307 KLRSNAIIH 315
            L  +A I 
Sbjct: 269 DLLKDADIK 277


>gi|326576612|gb|EGE26519.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis 101P30B1]
          Length = 617

 Score = 73.6 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/396 (8%), Positives = 85/396 (21%), Gaps = 88/396 (22%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVIT----DGDIS 57
              +   L  +   L     LI    + + ++   A+       +  +V+       +++
Sbjct: 1   MENMRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHAIQPNELIKVGNQVVDVATFQAEVN 60

Query: 58  KRIALLKLQ------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
                L  Q           L+++ ++ L  + L + +    G+T     +      +  
Sbjct: 61  AERNALIEQGVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQHYEV 120

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFK------------------------------------ 135
                      F                                                
Sbjct: 121 FHDNGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSKLIDL 180

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ-- 193
           Q  A +         D++ +    + +I A   + ++  ++   +      +  N L   
Sbjct: 181 QLEAREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIELDPNVLSVG 240

Query: 194 -------------------------------NQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                                               Q R    +             +  
Sbjct: 241 TPTEQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEALAKAH 300

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKK----SQNNTTNPYVTQKGVEYIAICDKRDL 278
           +      + G       S        + +     S    + P  T  G     +     +
Sbjct: 301 SDDPSGSNGGVIGSFNPSVFGEYAAGVEQALSGLSVGQISQPVQTGFGYHIFKVT---KV 357

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             +    A +  Q      +    +    L  +A I
Sbjct: 358 SNDTPNIASMRDQLMDRAAKLKRDQAFADL--SAKI 391


>gi|78046641|ref|YP_362816.1| peptidylprolyl isomerase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78035071|emb|CAJ22716.1| peptidylprolyl isomerase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 656

 Score = 73.6 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/249 (8%), Positives = 68/249 (27%), Gaps = 5/249 (2%)

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
           AL++       + +   +        + E     +    +         A +T   ++  
Sbjct: 173 ALVRDSLQQSVIPQAVAESGFATKS-EFERLLKLMGETRDVELAMLPPPAADTAPVSDAQ 231

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
                     D    + + I+ +  +              +      +K + +   + L 
Sbjct: 232 IKQWYDGHAQDFRQPETVTIEYVELNAATMPPATAADEATLRKRYEDEKARFVEPEQRLA 291

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
             +L S   +    +    K  K A E++          +  +       + G   ++ +
Sbjct: 292 SHILISAGADAAAQKAAEAKAAKLAAEAKQPGADFAALAKANSQDPGSKDAGGDLGWVEK 351

Query: 240 SDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE 298
             +   F++            P  ++ G   I + + +   G+      +  Q    +++
Sbjct: 352 GAMVKPFEDALFSMKAGEVVGPIKSEFGYHVIQLREVKGGQGKS--FEQVRDQLAAEQLK 409

Query: 299 KHEAEYVKK 307
               +    
Sbjct: 410 ADADKAFAD 418



 Score = 50.1 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 57/236 (24%), Gaps = 34/236 (14%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTI-------------- 46
           M  K+    S +I       ++I F  V   SY     ++     +              
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFLFVIDNSYLGGIGANN-VAKVQAPPTWWKSAPSWW 59

Query: 47  ------NGEVITDGDISKRIALLKLQKINGELEK-------------IAVQELIVETLKK 87
                     I+  D   R    ++Q+   + EK               + +L+ E + +
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQARMQERQRQGEKFDPRTFESRENKLQVLDQLVDEQVVR 119

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
              E +GI     TV  +                 +      G            +   +
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQVDGKFSPDQYRAALAQGTPPRTPAQFDALVRDSL 179

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
            ++              +  +++  +      +   +   P          Q +  
Sbjct: 180 QQSVIPQAVAESGFATKSEFERLLKLMGETRDVELAMLPPPAADTAPVSDAQIKQW 235


>gi|16077140|ref|NP_387953.1| protein secretion PrsA [Bacillus subtilis subsp. subtilis str. 168]
 gi|221307882|ref|ZP_03589729.1| hypothetical protein Bsubs1_00365 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312204|ref|ZP_03594009.1| hypothetical protein BsubsN3_00365 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317137|ref|ZP_03598431.1| hypothetical protein BsubsJ_00365 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321400|ref|ZP_03602694.1| hypothetical protein BsubsS_00365 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|586895|sp|P37566|YACD_BACSU RecName: Full=Uncharacterized protein yacD
 gi|467461|dbj|BAA05307.1| unknown [Bacillus subtilis]
 gi|2632339|emb|CAB11848.1| putative protein secretion PrsA homolog [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 297

 Score = 73.6 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/319 (11%), Positives = 96/319 (30%), Gaps = 36/319 (11%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIV-SYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
             S + +  +L    V  I     +  S    + S     TI G+ +T  +  K +    
Sbjct: 1   MKSRTIWTIILGALLVCCIAVAYTLTKSQAGASSSGESIATIGGKSVTREEWLKEM---- 56

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                 +  K  ++++I   + +Q  +K+ +    + V+  F+          ED     
Sbjct: 57  ----EDQYGKSTLEDMINVRVVEQLAKKNKLKISKSEVDREFLLIKAVNNSFYEDE---- 108

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
                  +  ++    Q  +  ++++           E+ +   K K +   +   R   
Sbjct: 109 -------HTTEKEWKDQIRYNILLEDLLTRDIDISNKELESFYNKNKELYQFDDSYRIRH 161

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL-- 242
             + D +   +   +         +     +    E+   +      G   ++ E+    
Sbjct: 162 IVVKDEEEAREVLKE--------LKGGSSFEAVAAERSTDRYTSPYGGDLGFVTEASDNI 213

Query: 243 -HPQFQNLLKKSQNNTT-NPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIE 298
                +      ++  +  P     G   I + +K          +K  +  Q    ++ 
Sbjct: 214 PSAYIEEAKTLKEDEWSQEPIKVSNGYAIIQLKEKLKARTFSFDEVKDQIRRQIAMDQLG 273

Query: 299 KHEAEYVKKLRSNAIIHYY 317
                 VK L   A + ++
Sbjct: 274 DKAT--VKTLWKEADVSWF 290


>gi|306520092|ref|ZP_07406439.1| putative peptidyl-prolyl isomerase [Clostridium difficile
           QCD-32g58]
          Length = 323

 Score = 73.6 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 97/301 (32%), Gaps = 31/301 (10%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS 99
           ++    +N   IT     K  A+L        +   ++ EL     KK   +   +    
Sbjct: 26  NKSLAKVNDVEITKEQYKKTKAVLSATNNY--INGQSLDELEKTLDKKGRNKLENVIISF 83

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-------- 151
              N    Q A++ GL+          Q + D         + +    V  +        
Sbjct: 84  MVDNELLYQEAKDKGLTPSKSEVDSKYQELEDKMNLNTSYKEKMDKAGVDKEYLKQEISR 143

Query: 152 ----------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN------Q 195
                     F  +    + ++ A     K     E +  + +     +K +       +
Sbjct: 144 DLAIDKNKKAFEDRINISDNDMEAYYTSHKKDFNVEEVSASQILISTLDKNKKEVSKDKK 203

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQF-QNLLKKS 253
             ++K+  +            +  +K++       + G+  Y  + D + +F + + K  
Sbjct: 204 EALKKKADNILTKIKNGESFESLAKKYSDDKATGKNGGQLGYFTKDDKNAEFTKEVFKLK 263

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           +N  +N + T  G   + + DKR+            +    + + +   E++KKL  +A 
Sbjct: 264 KNEVSNVFETSYGYHIVKVTDKRER---QKSFNECQSLIRESILNEKYIEHIKKLNEDAK 320

Query: 314 I 314
           I
Sbjct: 321 I 321


>gi|58580660|ref|YP_199676.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58425254|gb|AAW74291.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 675

 Score = 73.6 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/244 (8%), Positives = 71/244 (29%), Gaps = 8/244 (3%)

Query: 70  GELEKIAVQELIVETLK----KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
             L++  + + I ++      + E     +    +         A +T   ++       
Sbjct: 196 DSLQQSVIPQAIADSGFATKSEFERLLKLMGETRDVELAMLPPPAMDTAPVSDAQIKQWY 255

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
                D    + + I+ +  +              +     ++K + +   + L   +L 
Sbjct: 256 DGHTQDFRQPETVTIEYVELNAATMRPATAADEATLRKRYEEEKARFVEPDQRLASHILI 315

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHP 244
           S   +    +    K  K A E++          +  +       + G   ++ +  +  
Sbjct: 316 SAGSDAAAQKAAEAKAAKLAAEAKAPGADFAALAKANSQDPGSKDAGGDLGWVEKGTMVK 375

Query: 245 QFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAE 303
            F++        +   P  ++ G   I + + +   G+      +  +    +++    +
Sbjct: 376 PFEDALFSMKAGDVVGPIKSEFGYHVIQLREVKGGQGKS--FEQVRDKLAAEQLKADADK 433

Query: 304 YVKK 307
               
Sbjct: 434 AFAD 437



 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 58/236 (24%), Gaps = 34/236 (14%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTI----N--------- 47
           M  K+    S +I       ++I F  V   SY     ++     +    N         
Sbjct: 20  MLQKLRDKTSGWIATAILGLLMIPFLFVIDNSYLGGIGANN-VAKVQAPPNWWKSAPSWW 78

Query: 48  -------GEVITDGDISKRIALLKLQKINGELEK-------------IAVQELIVETLKK 87
                     I+  D   R    ++Q+   + E                + +L+ E + +
Sbjct: 79  PVSLLWQHHEISTQDFRARFEQARMQERQRQGENFDPRTFESRENKLQVLDQLVDEQVVR 138

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
              E +GI     +V  +                 +      G            +   +
Sbjct: 139 LGAEDAGIVIGDASVRDYIANIQAFQVDGKFSPDKYRAALAQGTPPRTPAQFDALVRDSL 198

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
            ++       +      +  +++  +      +   +   P          Q +  
Sbjct: 199 QQSVIPQAIADSGFATKSEFERLLKLMGETRDVELAMLPPPAMDTAPVSDAQIKQW 254


>gi|297538717|ref|YP_003674486.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera sp.
           301]
 gi|297258064|gb|ADI29909.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera sp.
           301]
          Length = 633

 Score = 73.6 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 44/159 (27%), Gaps = 7/159 (4%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
           FM      + E+                 R     I           Q+    AEE   +
Sbjct: 239 FMRNVNVSDDEVKKYYDDNAAKFQGNEQRRASHILIAFGVSATPEQKQQAKAKAEEILAQ 298

Query: 212 LPKDCNKLEKFA-----SKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQK 265
           + KD +K E+ A          V  G         +   F++       N  ++   ++ 
Sbjct: 299 IKKDPSKFEQLAVKNSQDPGSAVKGGDLGSFSRGAMVKPFEDAAFSMKVNQVSDLVESEF 358

Query: 266 GVEYIAICDK-RDLGGEIALKAYLSAQNTPTKIEKHEAE 303
           G   I + +         +LK  +       K +   A+
Sbjct: 359 GYHIIKVTEISGQNADFNSLKPQIKGDLMFQKAKDEFAK 397



 Score = 59.7 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 56/163 (34%), Gaps = 14/163 (8%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++ T    ++       + I F +  I SY S A ++     + G  I+       +
Sbjct: 1   MLDQIRTVAQGWVGKALLALITIPFALFGIDSYLSSAGNNVAVAKVGGNSISVQAYDNAL 60

Query: 61  ALLK-----------LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF---F 106
             ++            Q  + E++ + + +LI + L   EI  +      + +  +    
Sbjct: 61  KNMRNRLQSEGKFEQAQLDSPEVKSLVLDQLINKQLLSDEIHNAKYAISDSQLATYVTGM 120

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
            +  ++   S E +   L +  +  + F+  +    +      
Sbjct: 121 PEFQKDGKFSQELYDQTLSQNQLSPSKFEAGMRADLLAQQAQD 163


>gi|172064366|ref|YP_001812017.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MC40-6]
 gi|171996883|gb|ACB67801.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MC40-6]
          Length = 282

 Score = 73.6 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/322 (11%), Positives = 81/322 (25%), Gaps = 57/322 (17%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMS-SRIRTTINGEVITDGDISKRIALLKLQK 67
           +      +     +     +P+ +    A   +    T+NG  ITD +++  +   K Q 
Sbjct: 1   MQMTFNRILIATAIAWQMALPVQAEAQSASLPAGSVATVNGTPITDAEVNAVLQASK-QP 59

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
              ++ +    +LI   L +Q  EK+                                  
Sbjct: 60  DTPQIRQAIKNQLIAHVLIQQAAEKAKYGGKPEVQAA----------------------- 96

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
                   Q     +     +K++                + + ++   E   R ++   
Sbjct: 97  -------MQVAKANAEAQLYLKDNIKPSPVTDAQVKARYDEIVGSLGKEEVKPRIIVVKD 149

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD------ 241
                     ++                     +++      + G+  ++          
Sbjct: 150 AATAATVLAQLKA-----------GQTFEALARQYSQAPTAGAGGELPWVSFKMPLVEGN 198

Query: 242 -----LHPQFQNLLKKSQNNTTNPYVTQKGV-EYIAICDKRD--LGGEIALKAYLSAQNT 293
                L          +   T +      G    + I  KR   +      ++ +  Q  
Sbjct: 199 TQGLPLPVAQAMTKLPAGGVTADSIPLGNGARAIVKIDAKRPTQVPAYDTAQSTIRQQLQ 258

Query: 294 PTKIEKHEAEYVKKLRSNAIIH 315
               EK  AE V  L  +A I 
Sbjct: 259 ALAFEKATAELVGGLLKDAKIQ 280


>gi|329847914|ref|ZP_08262942.1| PPIC-type PPIASE domain protein [Asticcacaulis biprosthecum C19]
 gi|328842977|gb|EGF92546.1| PPIC-type PPIASE domain protein [Asticcacaulis biprosthecum C19]
          Length = 348

 Score = 73.6 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/288 (10%), Positives = 70/288 (24%), Gaps = 49/288 (17%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK------IAVQELIVETLKKQ 88
                      I+GE +   D+               L+         ++E+I + L  +
Sbjct: 33  PPEPGDIAVAKIDGETVWASDVRAEAVAQGAIGPGEPLDPTSDMFARTLEEVIDQRLLAK 92

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
                G+                                        Q    + +   +V
Sbjct: 93  AARAKGLDKSVAAQRRL------------------------------QAAEDRILGDMLV 122

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
           +N          ++   ++Q   +    E   R +L              ++     +  
Sbjct: 123 ENTIDRDIDEKSIKEHYDEQVKLSKQSEEIRTRVILL----------KSKEEADNVMKAV 172

Query: 209 RLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGV 267
           +     +   +E+   +    S G   Y     +   ++ +       +T  P   + G 
Sbjct: 173 QGGSLFEAMAMERSIDQTTRFSGGDMGYFTTDIMPQAYKGVLSTAKIGDTVGPVQAEGGW 232

Query: 268 EYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             + + D+R                    I    A  ++ LR  A + 
Sbjct: 233 AILRVEDRRPEQL--PSLEEERPIIMRYLIYNQVAGLLESLRKGAKVE 278


>gi|320106474|ref|YP_004182064.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Terriglobus
           saanensis SP1PR4]
 gi|319924995|gb|ADV82070.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Terriglobus
           saanensis SP1PR4]
          Length = 275

 Score = 73.6 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/180 (10%), Positives = 59/180 (32%), Gaps = 6/180 (3%)

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
               +     +     +      E+    ++ +    +   I         ++ +++   
Sbjct: 96  RDNLLIEKYSQWLTRHEMRPSREEVERYYEQHRVEFHQPERIEVAHIICNIDRPEDRAVA 155

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           Q +++ AE             EK++     V      ++    +  +F + +    +N  
Sbjct: 156 QSKMQQAEMELNTGKPFQKVAEKYSDCGGKV---PLGWITRGVMVEEFDEVVFTLKRNER 212

Query: 258 TNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +  + ++ G+    + + +  G E    +K  ++ +    + +K     V +    A+I 
Sbjct: 213 SEIFSSRFGLHIATVLNIKPAGYEPLQEVKLSIAKRMLEERRQKTVRLAVDEATRRAVIE 272


>gi|152980145|ref|YP_001353225.1| peptidyl-prolyl cis-trans isomerase [Janthinobacterium sp.
           Marseille]
 gi|151280222|gb|ABR88632.1| peptidyl-prolyl cis-trans isomerase [Janthinobacterium sp.
           Marseille]
          Length = 638

 Score = 73.6 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/270 (11%), Positives = 78/270 (28%), Gaps = 19/270 (7%)

Query: 53  DGDISKRIALLKLQKINGELEKIAVQE-LIVETLKKQEIEKSGITFD----------SNT 101
             D+ +  +LL  Q +   + + ++++ LIV+ +       +                  
Sbjct: 130 KFDVERYKSLLAAQGMTPAMYEASLRQDLIVQQVNAAIQSTAFAPDSLAQRLSELGEQER 189

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
              +    A +     +     L       N F     +++ +  +  +    +    + 
Sbjct: 190 EVQYLTFKAADYASQVKVTDDMLKAYYDKSNEFSVPEQVKAEYVVLTADALASQINVSDA 249

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           +I +  ++       +   R     I  NK             AE+    L K      K
Sbjct: 250 DIKSYYEQNAKQYGVDEQRRASHILIAANKDAPAAEKAAAKAKAEKLLETLRKSPQDFAK 309

Query: 222 FASKIH-----DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK 275
            A +           G   +  +  +   F++   K  Q   ++   +  G   I +   
Sbjct: 310 LAKENSNDPGSAERGGDLDFFSKGMMVKPFEDAAFKLKQGELSDLVESDYGFHIIKVTAI 369

Query: 276 RDLGGE--IALKAYLSAQNTPTKIEKHEAE 303
           +    +    +K  ++       + K  AE
Sbjct: 370 KPATLKPLEQVKGDIANDIRKQLVTKKYAE 399



 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDIS--K 58
           M   + T     ++ L    +   F +  + SY S   SS     ++G+ IT  +    +
Sbjct: 1   MFDFIRTH-QRLMQFLLLLVIFPSFALFGLESYTSMGDSSTTVAKVDGQAITQPEWDAAQ 59

Query: 59  RIALLKLQK-----------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
           R  + + ++              E ++  +  LI + +   E +++ ++    T+    +
Sbjct: 60  REQMERFRQMFGGQFDPKMFDTPEAKQDVLDGLIAQRVLAAEAKRNKLSVSDQTLQQTIM 119

Query: 108 QHA----RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
             A     +     E + S L  QG+    ++  L    I   V
Sbjct: 120 GIAGLTTADGKFDVERYKSLLAAQGMTPAMYEASLRQDLIVQQV 163



 Score = 37.3 bits (84), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/256 (8%), Positives = 63/256 (24%), Gaps = 8/256 (3%)

Query: 64  KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
            L+++ G++     ++L+ +   +        +      +      A    L  E  ++ 
Sbjct: 376 PLEQVKGDIANDIRKQLVTKKYAETADV---FSNTVYEQSDSLKSVADKLKLKIETVNNL 432

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
             +          + + + +     ++    K     +E+  N      +   +   +  
Sbjct: 433 SRQPNPAVAATAPFNSPKFLSALFSEDSLKNKRNTEAVEVAPNTLIAGRVVDYKPASKRP 492

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLP--KDCNKLEKFASKIHDVSIGKAQYLLESD 241
              +           +  +        +L   K  +    F++                 
Sbjct: 493 FDEVKAQVRDRVIQTEALVLAKNAGEEKLAALKAKDDASGFSATQTVSRAKSQGVNPALF 552

Query: 242 LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ-NTPTKIEKH 300
           L             +     V  +G   + +            K     Q  T    ++ 
Sbjct: 553 LA--VMKADTSKLPSYVGVEVPGQGYGVLRVTRVVQPSNVDKAKRQAEQQQITAALAQEE 610

Query: 301 EAEYVKKLRSNAIIHY 316
              Y+  L+  A +  
Sbjct: 611 MQAYLDVLKEKAKVKI 626


>gi|296329574|ref|ZP_06872060.1| hypothetical protein BSU6633_00635 [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305672771|ref|YP_003864442.1| putative secretion protein [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296153317|gb|EFG94180.1| hypothetical protein BSU6633_00635 [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305411014|gb|ADM36132.1| putative secretion protein [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 297

 Score = 73.6 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/314 (11%), Positives = 95/314 (30%), Gaps = 40/314 (12%)

Query: 15  LLTTYFVLIIFCIVPIV-----SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN 69
           + T     ++ C + +      S    + S     TI G+ +T  +  K +         
Sbjct: 6   IWTIILGALLVCCISVAYTLTKSQAGASPSGESIATIGGKSVTREEWLKEM--------E 57

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
               K  ++++I   + +Q  +K+ +   +N ++  F+          ED          
Sbjct: 58  DRYGKSTLEDMINVRVVEQLAKKNNLKVSNNEIDREFLLVKAVNNSFYED---------- 107

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
            ++  ++    Q  +  +++            E+ +   K K +   +   R     + D
Sbjct: 108 -EHTTEKEWKDQIRYNILLEELLTRDIDISNKELKSFYNKNKELYQFDDSYRIRHIVVKD 166

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL---HPQF 246
            +   +   +         +     +    E+   +      G   ++ E+         
Sbjct: 167 EEEAREVLKE--------LKGGSSFEAVAAERSTDRYTSPYGGDLGFVTEASDNIPSAYI 218

Query: 247 QNLLKKSQNNTT-NPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAE 303
           +      ++  +  P     G   I + +K          +K  +  Q    ++      
Sbjct: 219 EEAQTLKEDEWSDEPIKVSNGYAVIQLKEKLKARTFSYDEVKDQIRRQIAMDQLGDKAT- 277

Query: 304 YVKKLRSNAIIHYY 317
            VK L   A + ++
Sbjct: 278 -VKTLWKEADVSWF 290


>gi|206976548|ref|ZP_03237454.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus H3081.97]
 gi|206745231|gb|EDZ56632.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus H3081.97]
          Length = 288

 Score = 73.6 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/306 (10%), Positives = 88/306 (28%), Gaps = 46/306 (15%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +      L    ++ + +  + + S ++ T+  G+ IT  D   ++          +  K
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSSDKVVTSKAGD-ITKEDFYTQMK--------QQYGK 51

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             +  +++E +  +  +      D                   + F + L +QGI +   
Sbjct: 52  QVLNNMVMEKVLIKNYKVEDKDVDKKFD--------EMKKQYGDQFDTLLKQQGIKEETI 103

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
           K  +  Q      ++     K      +       +                        
Sbjct: 104 KNGVRAQLAQEKAIEKTITDKELKDNYKPEIKASHILVKD-------------------- 143

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK- 252
               +   K  +E   +        ++++         G   +     +  +F+    K 
Sbjct: 144 ----EATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGKMVKEFEEAAYKL 199

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIE--KHEAEYVKKLR 309
            ++  + P  +Q G   I + D ++        KA +  +    K +  +   + + K  
Sbjct: 200 KKDEVSEPVKSQFGYHIIKVTDIKEPEKSFEQSKADIKKEIVQKKSQDGEFMNDLMMKEI 259

Query: 310 SNAIIH 315
             A + 
Sbjct: 260 KKADVK 265


>gi|313672156|ref|YP_004050267.1| ppic-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938912|gb|ADR18104.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 623

 Score = 73.2 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 80/259 (30%), Gaps = 11/259 (4%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           IT       I +  L      +  IA    + +    +E        + + +        
Sbjct: 140 ITPETFENDIRVNLLLNKMKGV--IATSVYVNDQEILKEYRMRNKAVEISYIKVSPEDFE 197

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
           ++  +  +    +  +              +  + +   ++  +     E E+ +   K 
Sbjct: 198 KDVKVDDKSLEKYYLENKNEFLEP---TKAKLKYVEFAPDNVKIDDNISEQELQSYYLKN 254

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIH 227
           K    ++  I+     I  +  Q+   V+K +K AEE   +     K     ++++  I 
Sbjct: 255 KEQFKQDEQIKARHILIKIDNFQDNVSVEKALKKAEEIYKKAKSGAKFEELAKQYSDDIS 314

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK--RDLGGEIAL 284
             + G   ++    +  +F++ L    +   + P  T  G   I       +       +
Sbjct: 315 KNNGGDLGFVKRGMMIKEFEDALFSLKEGEISKPVKTSFGYHIIKNEKYLPKKEYTFAEV 374

Query: 285 KAYLSAQNTPTKIEKHEAE 303
           K  + +     KI     +
Sbjct: 375 KDQIRSTILKDKIMSQFKQ 393



 Score = 37.3 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 40/313 (12%), Positives = 85/313 (27%), Gaps = 24/313 (7%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI----- 60
              LS F+ ++   F+  IF +  +               I+  V++  +          
Sbjct: 9   RKILSIFLWIVIASFIGTIFLVWGVG---GKGNQKTYALKIDDHVVSFNEYKTTYENISN 65

Query: 61  ---ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR---NTG 114
               L         L K  ++E+I + L   E  +  +      V     +      N  
Sbjct: 66  TYRQLFGANIDQKMLSKQVIEEIISKYLLLDEANRLKLPVTDAEVLAEIKKVPAFQVNGQ 125

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
                +   L    I    F+  + +  +    +K          + EI    +  +N  
Sbjct: 126 FDKNRYLEVLRLNQITPETFENDIRVNLLLNK-MKGVIATSVYVNDQEILKEYRM-RNKA 183

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKA 234
           V    I+        +   +   ++K   + +   L   K   K  +FA           
Sbjct: 184 VEISYIKVSPEDFEKDVKVDDKSLEKYYLENKNEFLEPTKAKLKYVEFAP--------DN 235

Query: 235 QYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP 294
             + ++    + Q+   K++         +     I I + +D                 
Sbjct: 236 VKIDDNISEQELQSYYLKNKEQFKQDEQIKARHILIKIDNFQDNVSVEKALKKAEEIYKK 295

Query: 295 TKIEKHEAEYVKK 307
            K      E  K+
Sbjct: 296 AKSGAKFEELAKQ 308



 Score = 36.2 bits (81), Expect = 6.7,   Method: Composition-based stats.
 Identities = 23/263 (8%), Positives = 68/263 (25%), Gaps = 5/263 (1%)

Query: 56  ISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
           I     L K +    E++      ++ + +  Q  +     +           +      
Sbjct: 358 IKNEKYLPKKEYTFAEVKDQIRSTILKDKIMSQFKQSVQAKYKEIQSFGNLSGYIVKNPK 417

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
           S E   +    +G+ D    + +  + +  D  +   +              +    +  
Sbjct: 418 SLEIKETDYISEGVRDTFIPEDIKNELLKLDKTELSSLYLINGKYYLFEIADKITPTVPP 477

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
            E +   V+ S    +       +      + +     K  N   +  +    +      
Sbjct: 478 LEKIKEKVIKSYVRKQASIIAKQKADEAAGKSNINEAAKFLNLAPQDVAAFKRIDPIPNI 537

Query: 236 YLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEI--ALKAYLSAQNT 293
            +  +     F         ++            I + +      +     +  ++    
Sbjct: 538 GVNSTMTEAIFTTKAPAMVKSS---IQHGSSYYVIYVKNFLPASDDKLPEQRNTIAQYLI 594

Query: 294 PTKIEKHEAEYVKKLRSNAIIHY 316
             K  +    Y++KL+ +A I  
Sbjct: 595 NLKQTEAYNSYIEKLKKDARIDI 617


>gi|163848606|ref|YP_001636650.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222526541|ref|YP_002571012.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus sp.
           Y-400-fl]
 gi|163669895|gb|ABY36261.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222450420|gb|ACM54686.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus sp.
           Y-400-fl]
          Length = 302

 Score = 73.2 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/262 (10%), Positives = 62/262 (23%), Gaps = 52/262 (19%)

Query: 52  TDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
           T   + + +       +  +L +   +++I   L  Q   + GI  D   ++        
Sbjct: 67  TREQVEQIV-------VENDLRRQIFEQMIQNELLLQYARQHGIGIDPAALDAEI----- 114

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
                              D    Q L        +V                       
Sbjct: 115 -----------AARLPADADPAEVQDLRNVLAREQIVFAVIARNTRADMARA-------- 155

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVS 230
                    R +L +           +Q                     + +       +
Sbjct: 156 ---------RHILVADEATAQATLAELQA-----------GADFATLAAQRSQDTGSAAN 195

Query: 231 IGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA 290
            G   +    +  PQF+  +     NT     T  G   + + ++       +     + 
Sbjct: 196 GGDLGWTPRGEFVPQFEEAIFSLPLNTPQIVQTDFGFHIVEVLERESQRPFSSFDDLRTR 255

Query: 291 QNTPTKIEKHEAEYVKKLRSNA 312
           +N     ++    + ++LR  A
Sbjct: 256 RNASQFYQETFVPWYEELRRQA 277


>gi|57505879|ref|ZP_00371804.1| probable periplasmic protein Cj1289 [Campylobacter upsaliensis
           RM3195]
 gi|57015909|gb|EAL52698.1| probable periplasmic protein Cj1289 [Campylobacter upsaliensis
           RM3195]
          Length = 272

 Score = 73.2 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/296 (13%), Positives = 93/296 (31%), Gaps = 32/296 (10%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           I+  ++  V+  +  + + +   +  E IT+ DI + + LLKL        + A+  LI 
Sbjct: 4   ILMILLFFVAIVNAKVLNSVALVVEKEPITNYDIEQTMKLLKL------PREQALAVLIN 57

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           E ++  +I++  I  +   ++    +      ++ E F + L  +G     F+  L    
Sbjct: 58  EKMELSQIKQFSIVVNELELDTAISKILTQNKMNLEQFKNSLKAKGQNYELFRHNLKKDL 117

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
               + +    +   +   E      +        Y    V      +++  +     + 
Sbjct: 118 EKRKLYEKIASMNKTDFSEESAKKFFEANKEKFLFYTSIDVKIYRSSDQVILEKMKTDKK 177

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYV 262
              +   + L                                    L +      +    
Sbjct: 178 IILKAQNVNLNPHNAD------------------------PRLLALLSQLKIGEFSPVLN 213

Query: 263 TQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +++G E   +  K   ++     +K  +       + + +  +Y  KLRS   I Y
Sbjct: 214 SKEGFELYEVMAKSGANVPEFEQIKDSVMNVYFNEQRQNYIQDYFDKLRSKLNIEY 269


>gi|261880044|ref|ZP_06006471.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270333284|gb|EFA44070.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 474

 Score = 73.2 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/300 (9%), Positives = 85/300 (28%), Gaps = 38/300 (12%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +L +  +   +S+   A    +  T+NG+ +   +             +G +++ 
Sbjct: 1   MKIKLLLGVTLMCGTLSFAQNA--DPVIMTVNGKPVPRSEFEYSYN---KNNTDGVIDRK 55

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           +V+E +   +                          N  L  E          +      
Sbjct: 56  SVKEYVDLFI--------------------------NYKLKVEAAKEAGLDTMLSFRQEF 89

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
                Q I P ++  +          +I    Q+  +       +  +L  +      ++
Sbjct: 90  SGYRDQQIRPAMISEE---DVEAEARKIYRQTQQQVDQNGGMVHVAHILVMMKQQATPDE 146

Query: 196 GFVQK-RIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK- 252
               K RI    E+  +        ++ +       + G+   +++     +F+++    
Sbjct: 147 NRKAKVRIDSVYEALKKGADFAALAKQVSQDPGSANNGGELPMIVKGQTLKEFEDVAWSL 206

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT-KIEKHEAEYVKKLRSN 311
                + P+++  G   +     ++     + +  +          E+     +  L   
Sbjct: 207 KDGEMSEPFMSPAGWHIVLKKGHQNFYSYDSQRDAIMKYIDQRGLREQIINAKLDTLSKQ 266


>gi|134094954|ref|YP_001100029.1| putative peptidyl-prolyl cis-trans isomerase protein [Herminiimonas
           arsenicoxydans]
 gi|133738857|emb|CAL61904.1| putative peptidyl-prolyl cis-trans isomerase D, ppiD-like
           [Herminiimonas arsenicoxydans]
          Length = 636

 Score = 73.2 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/270 (10%), Positives = 73/270 (27%), Gaps = 19/270 (7%)

Query: 53  DGDISKRIALLKLQ-----KINGELEKIAVQELIVETLKKQEI------EKSGITFDSNT 101
             D+ +  A+L  Q          L +    + +   ++          ++     +   
Sbjct: 130 KFDVERYKAILAAQGMTPTMYEARLRQELTSQQVNAAIQNTAFAPDSLAKRLSELGEQER 189

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
                     +     +     L       N F     +++ +  +  +    +    + 
Sbjct: 190 EVQQLAFKTSDYAGQVKVTDDMLKSYYEKSNQFNVPEQVKAEYVVLTADALAAQINVSDA 249

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           +I +  ++       E   R     I  NK  +          AE+    L K+  +  K
Sbjct: 250 DIKSYYEQNAKHYGVEEQRRASHILIGVNKDASDAEKAAAKAKAEQLLATLHKNPQEFAK 309

Query: 222 F-----ASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK 275
                 +        G   +  +  +   F+    K  Q   ++   +  G   I +   
Sbjct: 310 LAKENSSDTGSAERGGDLGFFGKGMMVKPFEEAAFKLKQGELSDLVQSDYGFHIIKLTAI 369

Query: 276 RDLGGE--IALKAYLSAQNTPTKIEKHEAE 303
           +    +    +K  +++      + K   E
Sbjct: 370 KPASIKTLDEVKNEIASDIRKQLVAKKYTE 399



 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 55/164 (33%), Gaps = 18/164 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDIS--K 58
           M   + T     ++ L    +L  F  V + SY S   +S     +  + IT  +    +
Sbjct: 1   MFEFIRTH-RRLMQFLLLLIILPSFAFVGLESYTSMGDASNTVAKVADQTITQPEWDAAQ 59

Query: 59  RIALLKLQK-----------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
           R  + + ++              E ++  +  LI + +   E +++ +      +    V
Sbjct: 60  REQMSRFRQMFGDQFDAKMFDTPEAKQEILNNLIAQRVLTAEAKRNKLAVTDQALQQTIV 119

Query: 108 QH----ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
                   +     E + + L  QG+    ++  L  +     V
Sbjct: 120 NMGGLTTADGKFDVERYKAILAAQGMTPTMYEARLRQELTSQQV 163


>gi|45658751|ref|YP_002837.1| hypothetical protein LIC12922 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45601995|gb|AAS71474.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 362

 Score = 73.2 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/319 (13%), Positives = 100/319 (31%), Gaps = 19/319 (5%)

Query: 16  LTTYFVLIIFCIVPIV-SYKSWAMSSRIRTTINGEVITDGDISKR-------IALLKLQK 67
           L   F+  +F  +  + S  +    +R+  T+    I++ D+             LK + 
Sbjct: 26  LKNRFLTGMFVFLFFLRSTHAAESLNRVIATVGTVSISELDLDDATEKYNRLQKHLKHED 85

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG--LSAEDFSSFLD 125
                    +  LI   +     E+  I  +   V+    +     G     +   +   
Sbjct: 86  YRKSFRTRIIDFLIDRAIVDVVAEEESIQVNEQRVDSEIEKRMEVMGITNRKQFEKTMET 145

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
             G+    +   L  Q     +++    +     E EI +   + K+    E   R +  
Sbjct: 146 SSGMPFELWVTELPYQIKKGQLLQLKIAV-PPPNEQEIRSWYNQNKDKVGFEIRYRIISI 204

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI--GKAQYLLESDLH 243
           +  ++ +Q +  + K + +  +S L  P     +         +    G  +++   DL+
Sbjct: 205 APENDSIQEENRLYKEVSEIRKSILADPSSFALIAGSPRNDPALRARRGMVEWISSFDLY 264

Query: 244 PQFQNLL----KKSQNNTTNPYVTQKG-VEYIAICDKRDLGGEIALKAYLSAQNTPTKIE 298
              +              +  +  ++     + I  KR       L+  +       K E
Sbjct: 265 KYSKITATIAAPLPNGGVSEVFRDERKRYCILKIEGKRPTPM-ENLRGGIQNILYRDKEE 323

Query: 299 KHEAEYVKKLRSNAIIHYY 317
                ++K+ R+   I  +
Sbjct: 324 DTFHRWLKESRAEIPIQIF 342


>gi|288929625|ref|ZP_06423469.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288329130|gb|EFC67717.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 474

 Score = 73.2 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/293 (8%), Positives = 74/293 (25%), Gaps = 34/293 (11%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
            +   +   ++ + A       TING  ++  +                 + +  ++ + 
Sbjct: 5   ALSVALMFCAFVAHAQDDPTIMTINGRPVSRSEFE-------YSYNKNNTDNVVDKKTVA 57

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           + ++     K  +                      +             +   + L   +
Sbjct: 58  QYVELFVNYKLKVEAALAARLDTTQAFRNEFADYRDQQVRPSFVNNDDVDKAARQLYDDT 117

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
                                      ++       +   +L     +    Q   ++RI
Sbjct: 118 KQR------------------------IEGQGGLIRVAHIMLLLPQKSAKDLQRRAEQRI 153

Query: 203 KDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNP 260
                +  R         K +         G+  +L +     +F++          + P
Sbjct: 154 DSIYNALKRGADFAALARKLSDDKGSAQQGGELPWLQKGQTLKEFEDAAFALKPGEISKP 213

Query: 261 YVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP-TKIEKHEAEYVKKLRSNA 312
            ++  G   I + ++R      ++KA + A        E+     + +L   +
Sbjct: 214 LLSPAGYHIIKMIERRSFLPYDSVKADIFAYIEQTNMREQIIDNKLNELAKAS 266


>gi|153005189|ref|YP_001379514.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152028762|gb|ABS26530.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 342

 Score = 73.2 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/300 (10%), Positives = 79/300 (26%), Gaps = 33/300 (11%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVE 83
              +  +V   S +  + +    +G V+T  D+ +  + L                    
Sbjct: 62  AVLLAALVLGCSSSDPADVVGRFDGGVVTAEDLHREASRLPPLLR--------------- 106

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
                        F++       V    +  L A +       +        + L  +  
Sbjct: 107 -----------ARFETEAGRRDMVGAIVDKRLLAREARRRKLHEDPEIRRELEELEERLA 155

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNI--TVREYLIRTVLFSIPDNKLQNQGFVQKR 201
              ++  +   +    + E+ A                +R VL  +     ++     + 
Sbjct: 156 IQALLAAEEKARGSASDAELRAWYDSHGAELAQPERLRVRRVLAKVDPGASRSDRERARE 215

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP---QFQNLLKKSQNNTT 258
             +    RLR  +    +            G    +   D      +       +    +
Sbjct: 216 RAERFAGRLRAGERFEAVAVSGDGPERARGGDLGLIGRGDGKDARLESAAFELPAVGARS 275

Query: 259 NPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                  G   + + ++R   +      +  +S +  P    K   E + +LR +A + +
Sbjct: 276 PVIELTDGFAVLELIERRPGRVPSFEEARGEVSNRLVPQLKRKAFDELLSRLRRDADVEF 335


>gi|305664741|ref|YP_003861028.1| putative exported peptidyl-prolyl cis-trans isomerase [Maribacter
           sp. HTCC2170]
 gi|88707863|gb|EAR00102.1| putative exported peptidyl-prolyl cis-trans isomerase [Maribacter
           sp. HTCC2170]
          Length = 483

 Score = 73.2 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/283 (10%), Positives = 80/283 (28%), Gaps = 14/283 (4%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQ--KINGELEKIAVQELIVETLKKQEIEKSGITF 97
             I   +   VI + DI K +  LK Q            + +L+ + L   +  +  +  
Sbjct: 60  DGIAAVVGDYVILESDIEKTLIDLKSQGAMTEDITRCGLLGKLMEDRLYAHQAVQDSLLV 119

Query: 98  DSNT----VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
             +                 G  A+    +  +           +    +  + +++  +
Sbjct: 120 SDDEVSLTTERQIQSFVAQMGSMAKLLKFYKKENEASLREDINKINKLRMLSEKMQSSIV 179

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
            +      E+     K+       +     +  I       +   QK I      +  + 
Sbjct: 180 SEIEITPEEVRQFFNKIPEDERPVFGAEMEISQIVKQPKATEIEKQKVIDKLSAIKADVE 239

Query: 214 KDCNKLEK----FASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGV 267
            +  K       ++         G      ++     F+++     +   + P+ T  G 
Sbjct: 240 DNDAKFSVKAILYSQDPGSKSKGGFYSITKDTGFDKTFKDVAFSMQEGAVSEPFETMFGF 299

Query: 268 EYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
             I I   R    ++     ++ + +   +++     +  +R 
Sbjct: 300 HLIYIEKIRGQELDLRHI-LITPEISQESLDEA-KTELDSIRK 340


>gi|319787632|ref|YP_004147107.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317466144|gb|ADV27876.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 654

 Score = 73.2 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 15/154 (9%), Positives = 46/154 (29%), Gaps = 4/154 (2%)

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
              + + +     E  + + +               K  + A ++            + +
Sbjct: 274 ERYEAEKQRFGDPERRLASHILVRVPEGGDAAAAEAKAKQLAGQAAAPGADFAALAREHS 333

Query: 224 SKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRD--LG 279
                  + G   ++ +  +   F+          T+ P  T+ G   + + + +   L 
Sbjct: 334 EDPGSRDTGGDLGWVEQGMMVEPFEQALFAMQAGETSGPVKTEFGWHVLQLREVQPGALK 393

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
               ++  L+ +      E+  +E + +L   A 
Sbjct: 394 PFEEVREELAREQAQADRERAYSELLGRLTDLAY 427



 Score = 54.7 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/255 (8%), Positives = 61/255 (23%), Gaps = 35/255 (13%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTI-------------- 46
           M  K+    S +   +    ++I F  V   SY     ++     +              
Sbjct: 1   MLQKLRDRSSGWAATIIIALLMIPFLFVVDQSYLGGMGANN-VAQVKAPPSWWKGAPGFW 59

Query: 47  ------NGEVITDGDISKRIALLKLQKINGE-------------LEKIAVQELIVETLKK 87
                   E ++  D  +R+   ++     +              ++  + EL+ E +  
Sbjct: 60  PVSLLWEHEEVSVEDFRQRLEQARMLARQQQGEAFDPREFEGIENKRRILDELVDEKVML 119

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
               + G+      V  +             D +++                   +   +
Sbjct: 120 LASARDGVVVSDAAVREYIASIPAFQVDGKFDQNAYQMALSSQFPPRTPRQFEDLVRTTL 179

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
            ++   +  G+      A   ++  ++     +   L                +    E 
Sbjct: 180 RQSLVPVGVGSSAFVTDAELDRLLRLSGETRDVELALMPEIAEDTTPVTDADAKAW-YEA 238

Query: 208 SRLRLPKDCNKLEKF 222
                        ++
Sbjct: 239 HTADFMSPEKVAIEY 253


>gi|229095647|ref|ZP_04226628.1| Foldase protein prsA 1 [Bacillus cereus Rock3-29]
 gi|229114599|ref|ZP_04244013.1| Foldase protein prsA 1 [Bacillus cereus Rock1-3]
 gi|228668664|gb|EEL24092.1| Foldase protein prsA 1 [Bacillus cereus Rock1-3]
 gi|228687779|gb|EEL41676.1| Foldase protein prsA 1 [Bacillus cereus Rock3-29]
          Length = 287

 Score = 73.2 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/305 (11%), Positives = 88/305 (28%), Gaps = 46/305 (15%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S ++ T+  G+ IT  D    +          +    
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKVVTSKAGD-ITKEDFYNEMK--------QKAGSQ 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +Q +++E +  +  +      D                   + F + L +QG+ +  FK
Sbjct: 52  VLQGMVMEKVLIKNYKVDDKEVDKKLDETK--------KQVGDQFDTLLKQQGMKEETFK 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             L  Q      ++     K      +       +                         
Sbjct: 104 NMLRAQLAQEKAIEKTITDKELKENYKPEIKASHILVKD--------------------- 142

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              +   K  +E   +        ++++         G   +     +  +F++   K  
Sbjct: 143 ---EATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFEHGKMVKEFEDAAYKLK 199

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRS 310
           ++  + P  TQ G   I + D ++        KA +  +    K++      + + K   
Sbjct: 200 KDEVSEPVKTQFGYHIIKVTDIKEPEKSFEQSKADIKKELIAKKMQDGAFMNDLMMKEIK 259

Query: 311 NAIIH 315
            A + 
Sbjct: 260 KADVK 264


>gi|70730194|ref|YP_259933.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Pseudomonas fluorescens Pf-5]
 gi|68344493|gb|AAY92099.1| PPIC-type PPIASE domain protein [Pseudomonas fluorescens Pf-5]
          Length = 318

 Score = 73.2 bits (177), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/264 (7%), Positives = 75/264 (28%), Gaps = 8/264 (3%)

Query: 56  ISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
           + +++A        G  +++A +EL        E  +  +  +   +  +          
Sbjct: 41  LQQQVASTPAVARLGN-QQVAAEELKRLFASLPEESRGQLRGNRPALEAWIRSRLAE-KA 98

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN--DFMLKYGNLEMEIPANKQKMKNI 173
             E   +   +Q        +    Q ++ D +++       Y +      A        
Sbjct: 99  VLEQADAQGWRQRPEVEQQTRAATEQIVFRDYLQSVSQVPADYPSPAELQQAYDSGKSAW 158

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIG 232
                   + +F         +   ++  + + +++    +      +++         G
Sbjct: 159 MTPPLYRVSQIFLGVAEPQAAEQVRRQAQELSRKAQAAPGEFAALAAQYSQDRDSAQRGG 218

Query: 233 KAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLS 289
            +       L       + +      +    +  G   + + +++         L+  L+
Sbjct: 219 DSGLQPLQQLLPEVRSAVARLKVGGVSEVVQSAAGFHVLKLTEQQPARTASLDELRDRLT 278

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAI 313
                 + E+    Y++ + + A 
Sbjct: 279 QALRAQRQEQIAKAYLEGMLNTAT 302


>gi|170727449|ref|YP_001761475.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella woodyi
           ATCC 51908]
 gi|169812796|gb|ACA87380.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella woodyi
           ATCC 51908]
          Length = 619

 Score = 73.2 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/252 (9%), Positives = 57/252 (22%), Gaps = 7/252 (2%)

Query: 49  EVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
           + I    +  +    +         +  V  L+                   T +  +  
Sbjct: 139 QAILR-QLGYQANSFRDMMRTDMTRRQLVASLVGSEFVLPSEADYLAGIQGQTRDIRYHV 197

Query: 109 HAR--NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
                    +                 F     +   + ++   D        + E    
Sbjct: 198 IDATPYIAQAVVSDEDARAFYDANLAQFMSPETLSLEYIELNAKDMANDVVVTDEEAQTY 257

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
             + K   ++    R     + +          K      + +           +     
Sbjct: 258 YDENKQQYLKPEK-RLAAHILVNLGDDESAAKAKADAIYAKLQAGEEFAELAKTESEDTF 316

Query: 227 HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD--LGGEIA 283
                G+  +  +  + P+F ++L   S    +    T  G   I + D +         
Sbjct: 317 SGEQGGQLDWFEKGVMEPEFDDVLFSLSNGEYSAVVKTSFGYHIIKLLDLQPGAEAPFED 376

Query: 284 LKAYLSAQNTPT 295
           +KA + AQ    
Sbjct: 377 VKAKILAQLKEK 388



 Score = 66.2 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 65/238 (27%), Gaps = 19/238 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+       I       V++ F    + SY   +  +    T+NGE I++  + +  
Sbjct: 1   MLEKIREGSQGVIAKSILVLVILSFAFTGVSSYLGSSTEAA-AATVNGEEISESALEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     +++  ++ L+ E L  Q   + G+      +  
Sbjct: 60  QSERARLEQQLGEMFEALAADDSYLASVKQSVLERLVAEKLLDQSATELGLRVSDEQIRT 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
             +           D   +             +     +  D+ +   +      E  +P
Sbjct: 120 AIMTEPAFQTDGKFDNDRYQAILRQLGYQANSF--RDMMRTDMTRRQLVASLVGSEFVLP 177

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +    +  I  +   IR  +        Q     +      + +  +         ++
Sbjct: 178 SEADYLAGIQGQTRDIRYHVIDATPYIAQAVVSDEDARAFYDANLAQFMSPETLSLEY 235


>gi|160898739|ref|YP_001564321.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Delftia acidovorans
           SPH-1]
 gi|160364323|gb|ABX35936.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Delftia acidovorans
           SPH-1]
          Length = 261

 Score = 73.2 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 45/300 (15%), Positives = 87/300 (29%), Gaps = 48/300 (16%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--GELEKIAVQ 78
           +L       ++S  + + S++    +NG+ +           ++        ELE    +
Sbjct: 5   LLTSLVTAAVLSTAALSASAQNIAVVNGKAVPKARAEALKQQIEQSGRPVTPELEGQIKE 64

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
           E+I   +  QE  K  +                                          L
Sbjct: 65  EVIAREIFMQEANKRSLANSEAYKQQ-------------------------------MEL 93

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
           A Q+I    +  DF  K    + E  A   K       +    + +    +++ +     
Sbjct: 94  ARQTILIRALFEDFQKKNPVTDAEAKAEYDKAVAANSGKEYKASHILVESEDRAKAIIAE 153

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQN--LLKKSQN 255
            K  K  E+            +K +         G   +    +  P+F    +  +   
Sbjct: 154 IKAGKKFEDI----------AKKESKDPGSGARGGDLDWANPGNYVPEFSEALIKLEKGG 203

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            T  P  TQ G   I + D R    E+     +  Q      ++  A++ + LR  A I 
Sbjct: 204 MTQEPVKTQFGYHIIRLDDARQA--ELPKFEEVKPQIVQQLQQQKLAQFQESLREKAKIQ 261


>gi|128297|sp|P23119|NIFM_AZOCH RecName: Full=Protein nifM
 gi|142394|gb|AAA22166.1| nifM [Azotobacter chroococcum]
          Length = 293

 Score = 73.2 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 85/262 (32%), Gaps = 10/262 (3%)

Query: 63  LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
           L  +++      I  Q+ I + + +     +       +          N   SAE    
Sbjct: 30  LSEEQLQQAERIIGRQKHIEDAVLRC--PDAAGVVIPASQIEEAWTQIANRYESAEALQQ 87

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM--LKYGNLEMEIPANKQKMKNITVREYLI 180
            LD QG+     +  LA +     V+        +  + ++ +       +      +  
Sbjct: 88  ALDAQGLERVGMRAMLARELKVQAVLDCICAGLPEISDTDVSLYYFNHAEQFKVPARHKA 147

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP--KDCNKLEKFASKIHDVSIGKAQYLL 238
           R +L +I ++  +N     +   +A   RLR    +   +  K +     +  G    ++
Sbjct: 148 RHILVTINEDFPENTREAARTRIEAILKRLRGKPERFAEQAAKHSECPTAMQGGLLGEVV 207

Query: 239 ESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPT 295
              L+P+      + +Q   +    +  G   +               +   L  +    
Sbjct: 208 PGTLYPELDACLFQMAQGQLSPVLESPIGFHVLFCESVSTARQLTLEEILPRLRDRLQLR 267

Query: 296 KIEKHEAEYVKK-LRSNAIIHY 316
           + + ++ ++++  L+ NA +  
Sbjct: 268 QRKAYQRKWLESLLQQNATLEN 289


>gi|294827708|ref|NP_710856.2| hypothetical protein LA_0675 [Leptospira interrogans serovar Lai
           str. 56601]
 gi|293385551|gb|AAN47874.2| hypothetical protein LA_0675 [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 344

 Score = 73.2 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/319 (13%), Positives = 100/319 (31%), Gaps = 19/319 (5%)

Query: 16  LTTYFVLIIFCIVPIV-SYKSWAMSSRIRTTINGEVITDGDISKR-------IALLKLQK 67
           L   F+  +F  +  + S  +    +R+  T+    I++ D+             LK + 
Sbjct: 8   LKNRFLTGMFVFLFFLRSTHAAESLNRVIATVGTVSISELDLDDATEKYNRLQKHLKHED 67

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG--LSAEDFSSFLD 125
                    +  LI   +     E+  I  +   V+    +     G     +   +   
Sbjct: 68  YRKSFRTRIIDFLIDRAIVDVVAEEESIQVNEQRVDSEIEKRMEVMGITNRKQFEKTMET 127

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
             G+    +   L  Q     +++    +     E EI +   + K+    E   R +  
Sbjct: 128 SSGMPFELWVTELPYQIKKGQLLQLKIAV-PPPNEQEIRSWYNQNKDKVGFEIRYRIISI 186

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI--GKAQYLLESDLH 243
           +  ++ +Q +  + K + +  +S L  P     +         +    G  +++   DL+
Sbjct: 187 APENDSIQEENRLYKEVSEIRKSILADPSSFALIAGSPRNDPALRARRGMVEWISSFDLY 246

Query: 244 PQFQNLL----KKSQNNTTNPYVTQKG-VEYIAICDKRDLGGEIALKAYLSAQNTPTKIE 298
              +              +  +  ++     + I  KR       L+  +       K E
Sbjct: 247 KYSKITATIAAPLPNGGVSEVFRDERKRYCILKIEGKRPTPM-ENLRGGIQNILYRDKEE 305

Query: 299 KHEAEYVKKLRSNAIIHYY 317
                ++K+ R+   I  +
Sbjct: 306 DTFHRWLKESRAEIPIQIF 324


>gi|163938953|ref|YP_001643837.1| peptidylprolyl isomerase [Bacillus weihenstephanensis KBAB4]
 gi|163861150|gb|ABY42209.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus
           weihenstephanensis KBAB4]
          Length = 289

 Score = 73.2 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/304 (11%), Positives = 92/304 (30%), Gaps = 42/304 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S +I T+  G+ IT  +   ++          +  K 
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKIVTSKAGD-ITKEEFYNQMKT--------QAGKQ 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +++E +  +  +      D                   + F + + +QG+ +   K
Sbjct: 52  VLNNMVMEKVLIKNYKVDEKEVDKKFD--------EMKKQVGDQFDTLMKQQGLKEETVK 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +         ++     K    + E    + K  +I V++                  
Sbjct: 104 NGVRASLAQEQAIEKAITDKDLKAKFEDYKQEIKASHILVKD------------------ 145

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKS 253
              ++  K  +E   +        +K++         G   +     +  +F +   K  
Sbjct: 146 ---EETAKKVKEELAQGKSFEELAKKYSEDPGSKEKGGDLGFFGPDKMVKEFDEAARKLK 202

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRSN 311
           ++  + P  TQ G   I + +          KA +  +    K +  +   + + K    
Sbjct: 203 KDEVSEPVKTQHGYHIIKVTETHADATFDKAKADIKKEAVQEKTQDAQFMNDLMMKEIKK 262

Query: 312 AIIH 315
           A + 
Sbjct: 263 ADVK 266


>gi|288924571|ref|ZP_06418508.1| peptidyl-prolyl cis-trans isomerase, PPIC [Prevotella buccae D17]
 gi|288338358|gb|EFC76707.1| peptidyl-prolyl cis-trans isomerase, PPIC [Prevotella buccae D17]
          Length = 457

 Score = 73.2 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/257 (11%), Positives = 71/257 (27%), Gaps = 15/257 (5%)

Query: 47  NGEVITDGDIS--KRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
             E I   D+   +   L +    +G+ +    +++ V+ L   +     I    + V  
Sbjct: 39  GDEPILKSDVEVMRLQGLAEGITFSGDPDCSIPEQIAVQKLFLHQAAIDSIEVSESEVAQ 98

Query: 105 FFVQHAR---NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
                         S E    +  +                +    ++   +        
Sbjct: 99  GIEGQINSWIQMTGSREKLEEYRKQSITQMRQQMHDDYRNRLLIQKMRMKLVEDVKVSPA 158

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           ++ A  + M   ++        +  +      +Q  + +   +      R+ K       
Sbjct: 159 QVRAYFRDMPADSLPFVPTEVEVEILTSQPKISQEEINRVKDELRNYTDRVNKGETTFST 218

Query: 222 FASKIHDVSI-----GKAQYLLESDLHPQFQNLLKKSQN--NTTNPYVTQKGVEYIAICD 274
            A    +        G+  Y     L P F N+     +    +    ++ G   I + D
Sbjct: 219 LARLYSEDPGTARMGGELDYTGRGMLDPAFANVAFNLTDPKKISKIVESEFGYHIIQLID 278

Query: 275 KRDLGGEIALKAYLSAQ 291
           KR   G+     ++  +
Sbjct: 279 KR---GDKIKVRHILRK 292


>gi|228908084|ref|ZP_04071932.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 200]
 gi|228851502|gb|EEM96308.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 200]
          Length = 293

 Score = 73.2 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/309 (12%), Positives = 88/309 (28%), Gaps = 50/309 (16%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKINGELE 73
           L      +       +++  +   S  + T  +    +T+ ++SK    L+ Q     L 
Sbjct: 11  LKKKKIFIGTIISCMMLALSACGSSDNVVTSKVGN--VTEKELSKE---LRQQYGESTLY 65

Query: 74  KIAVQE-LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           ++ + + L+ +     E  K  +    + +   F       GL  ED             
Sbjct: 66  QMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED------------- 112

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             K+ +  +  +   +K     K      +       +                      
Sbjct: 113 ELKEKMKPEIAFEKAIKATVTDKDVKDNYKPEMKVSHILVKD------------------ 154

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK 251
                 +K  K+ +E            ++++         G+           +F+    
Sbjct: 155 ------EKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAY 208

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY----VK 306
           K      + P  T  G   I + DK++L     +K  +       +++    ++    V 
Sbjct: 209 KLDAGQLSEPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVN 268

Query: 307 KLRSNAIIH 315
            L  +A I 
Sbjct: 269 DLLKDADIK 277


>gi|301154695|emb|CBW14158.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Haemophilus
           parainfluenzae T3T1]
          Length = 625

 Score = 73.2 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 45/394 (11%), Positives = 94/394 (23%), Gaps = 84/394 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           +  K+      FI       + + F I  +  Y      S     +NGE I+  D   R 
Sbjct: 2   LIEKMHGVAHSFIGKAIFALLPVSFLIGGMSGYLYGGNESF-AAKVNGETISQQDFLNRY 60

Query: 61  ALLKLQKINGE----------------LEKIAVQELIVETLK------------------ 86
                 +   E                L +  +Q L+ + L                   
Sbjct: 61  NQEFEARAQQEGESFLAKTDSVEFVTALRQNLIQRLVDQELIRQYAKELKLGVSDDMIKR 120

Query: 87  ------------KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
                       K +  +       N +            L+ E   + L          
Sbjct: 121 AIVSDPNLQSNGKFDNARYQQLLTQNGLTSDTYAAILRNALTLEQMQNGLADSEFVVPAQ 180

Query: 135 KQYLAIQSIWPDVVK------NDFMLKYGNLEMEIPANKQKMKNI--------------- 173
            +  A       + +       D + K    E EI A                       
Sbjct: 181 VKDSAQTFFQKRIARLATLPLADEVAKQKVTEEEIKAYYDANAKSLVQPEQAKVQYIRVS 240

Query: 174 -------------TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
                         + +Y        I       Q   +K      +   +        +
Sbjct: 241 ANELGKLQPVTETQIAQYYQENKAQFISQKLAHIQLATEKEADAVYQELQKGADFAELAK 300

Query: 221 KFA-SKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDL 278
             +  K+     G+  ++ +++L   F++     +    + P         I + D+++ 
Sbjct: 301 AKSVDKLSGAQGGELGWVKDNELPKNFEDAALLLNVGQYSTPVNVDGAYHIILVQDRKER 360

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +  +K  ++                K +R+ A
Sbjct: 361 TLDE-VKEQIADSVRKNLAGSRFQAVEKAVRAKA 393


>gi|188578367|ref|YP_001915296.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188522819|gb|ACD60764.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 675

 Score = 73.2 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 14/147 (9%), Positives = 46/147 (31%), Gaps = 4/147 (2%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
               ++K + +   + L   +L S   +    +    K  K A E++          +  
Sbjct: 293 KRYEEEKARFVEPDQRLASHILISAGSDAAAQKAAEAKAAKLAAEAKAPGADFAALAKAN 352

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           +       + G   ++ +  +   F++        +   P  ++ G   I + + +   G
Sbjct: 353 SQDPGSKDAGGDLGWVEKGTMVKPFEDALFSMKAGDVVGPIKSEFGYHVIQLREVKGGQG 412

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKK 307
           +      +  +    +++    +    
Sbjct: 413 KS--FEQVRDKLAAEQLKADADKAFAD 437



 Score = 50.8 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 58/236 (24%), Gaps = 34/236 (14%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTI----N--------- 47
           M  K+    S +I       ++I F  V   SY     ++     +    N         
Sbjct: 20  MLQKLRDKTSGWIATAILGLLMIPFLFVIDNSYLGGIGANN-VAKVQAPPNWWKSAPSWW 78

Query: 48  -------GEVITDGDISKRIALLKLQKINGELEK-------------IAVQELIVETLKK 87
                     I+  D   R    ++Q+   + E                + +L+ E + +
Sbjct: 79  PVSLLWQHHEISTQDFRARFEQARMQERQRQGENFDPRTFESRENKLQVLDQLVDEQVVR 138

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
              E +GI     +V  +                 +      G            +   +
Sbjct: 139 LGAEDAGIVIGDASVRDYIANIQAFQVDGKFSPDKYRAALAQGTPPRTPAQFDALVRDSL 198

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
            ++       +      +  +++  +      +   +   P          Q +  
Sbjct: 199 QQSVIPQAIADSGFATKSEFERLLKLMGETRDVELAMLPPPAMDTALVSDAQIKQW 254


>gi|312880257|ref|ZP_07740057.1| conserved hypothetical protein [Aminomonas paucivorans DSM 12260]
 gi|310783548|gb|EFQ23946.1| conserved hypothetical protein [Aminomonas paucivorans DSM 12260]
          Length = 344

 Score = 73.2 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/329 (10%), Positives = 94/329 (28%), Gaps = 25/329 (7%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVS---YKSWAMSSRIRTTINGEVITDGDISK 58
              + T++   +  +   FV+  F    + S    +   M         G+ I    + K
Sbjct: 3   MKYLRTNVRWIMITVVALFVVSCFAGYGMYSRGQGQGGGMRDYAVAEAGGKKIMRSSLEK 62

Query: 59  RIALLKLQKINGE--------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
            +  +  Q  N +        L K  +  ++V     +E+E   IT   + V     +  
Sbjct: 63  GMQEMAEQFGNQQITSADLPLLRKAVLDNIVVSEQLLREVENQKITVGDDEVATALKRIQ 122

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-FMLKYGNLEMEIPANKQK 169
                + E +  +L +  + +   K  L  Q     +++          ++     +  K
Sbjct: 123 DQF-PTKEAYMQYLQRSNLSEKDVKARLREQIAQQKLMEKVSAGASVDIVDARKLYDAMK 181

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
                        V+    ++  +         +  ++       D      ++  +   
Sbjct: 182 DMMFRRPMGYTVNVVTFRSESVAKEARQKLLAGEKWDDVLKACSGDIGNSTPYSKPV--- 238

Query: 230 SIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG---GEIALKA 286
                 ++ + +L    Q +        T           +A+   ++         +  
Sbjct: 239 ------FIPDRELASDLQVIRTLGIGKLTPLVRITSDDILLAVKRTKEAERVLPFAEVSG 292

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            +       K  + +  Y ++L+  A + 
Sbjct: 293 DIEQTLLAQKKRELQGAYFEELKKKAGVK 321


>gi|229171802|ref|ZP_04299374.1| Foldase protein prsA 1 [Bacillus cereus MM3]
 gi|228611699|gb|EEK68949.1| Foldase protein prsA 1 [Bacillus cereus MM3]
          Length = 289

 Score = 73.2 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/306 (10%), Positives = 91/306 (29%), Gaps = 45/306 (14%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +      L    ++ + +  + + S +I T+  G+ IT  +  +++        N +  K
Sbjct: 1   MKKAMLALAATSVIALSACGTGSSSDKIVTSKAGD-ITKEEFYEQMK-------NSQTGK 52

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             +  +++E +  +  +      D                   + F + L +QG+ +   
Sbjct: 53  QTLNNMVMEKVLIKNYKVDDKEVDKKFD--------EMKKQVGDQFDTLLKQQGLKEETV 104

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
           K  +  Q      ++     K      +       +                        
Sbjct: 105 KNGVRAQLAQEKAIEKTITDKELKDNYKPEIKASHILVKD-------------------- 144

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK- 252
               +   K  +E   +        ++++         G   +     +  +F++   K 
Sbjct: 145 ----EATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGAGKMVKEFEDAAYKL 200

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIE--KHEAEYVKKLR 309
            ++  + P  +Q G   I + D ++        KA +  +    K +  +   + + K  
Sbjct: 201 KKDEVSEPVKSQFGYHIIKVTDIKEPEKSFEQSKADIKKEIVQKKAQDGEFMNDLMMKEI 260

Query: 310 SNAIIH 315
             A + 
Sbjct: 261 KKADVK 266


>gi|87310508|ref|ZP_01092637.1| probable peptidyl-prolyl cis-trans isomerase [Blastopirellula
           marina DSM 3645]
 gi|87286729|gb|EAQ78634.1| probable peptidyl-prolyl cis-trans isomerase [Blastopirellula
           marina DSM 3645]
          Length = 620

 Score = 73.2 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/292 (8%), Positives = 71/292 (24%), Gaps = 26/292 (8%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQ 88
            +    + A   +    +N E IT  ++ +  A               ++ +I + L  +
Sbjct: 49  GVAPQGNSAPQIKTVAVVNREPITRDELGREAAR--------RFGDEVLESVINKHLIAE 100

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
           E  K GI      ++      A+  GLS + +   L  +               +WP + 
Sbjct: 101 ECHKRGIQITQTEIDAEIEASAKKFGLSVDRWLGLLKDERNVSPA---QYRSDIVWPTMA 157

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
                     +  E  +     +     +   R +        + ++   ++    A   
Sbjct: 158 LRRLAADRLEVTQEEFSKAW--QTEFGPKVKCRMI-------SVSDRALAEELRAKAAAD 208

Query: 209 RLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVE 268
                       +  +      +     +           +        +          
Sbjct: 209 PDVFADMAKDFSEDPNSAAARGLIPPIRMNMGT-PEVESLVFALKDGEVSQVLFIAGQYL 267

Query: 269 YIAICDKRDLGGEIALKA-YLSAQ----NTPTKIEKHEAEYVKKLRSNAIIH 315
                          +K   +  +        K+     +  ++L+  A + 
Sbjct: 268 IFKCESHLPPTEVDPMKQPEIQNRMVEAIREQKLRSSAGDVYEELQEKAQVE 319



 Score = 60.5 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/288 (8%), Positives = 71/288 (24%), Gaps = 18/288 (6%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKS 93
                +  +  T+NG+ I   ++ +       +     LE    + L+ + LK + +E +
Sbjct: 326 AKRQQNPGVVATLNGQQIMLDELQEEC---ITRHGIDVLEGEINRRLLQQALKSKNLEVT 382

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
               +                 S +  +   +         + Y+         +K    
Sbjct: 383 EQDLNDEISRAADSYGFLKEDGSPDYEAWLEEVTQEQSVTVEVYVRDAVWPTVALKKLVS 442

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
            K    E +I    +                       + +     + + D         
Sbjct: 443 DKVIVSEEDIQKGFEANYGE-----------RVQVLAIVLDNQRRAQEVWDMARKNPSEQ 491

Query: 214 KDCNKLEKFASKI-HDVSIGKAQYLLE-SDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIA 271
                  +++ +     + G+   +          +   +      ++     +    + 
Sbjct: 492 FFGELARQYSIEPVSKNNDGQVPPIRRNGGQPKLEEEAFRLQPGELSSIVNIGRQSLILK 551

Query: 272 ICDKRDLGGEI--ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
              +          ++  L       KI    A+    L+  A I  +
Sbjct: 552 AMGRTKPTITDVNDVRDELVKDIHEKKIRLEMAKQFDALKEEAQIDNF 599


>gi|288941155|ref|YP_003443395.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Allochromatium
           vinosum DSM 180]
 gi|288896527|gb|ADC62363.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Allochromatium
           vinosum DSM 180]
          Length = 645

 Score = 73.2 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/324 (12%), Positives = 92/324 (28%), Gaps = 27/324 (8%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +      +I       + I F +  I SY        I  T+NG  I   ++ +R+
Sbjct: 1   MLQTIRERAQGWIAWAIVILISIPFALWGIQSYLGVGGE-PIAATVNGVEIPARELDRRV 59

Query: 61  ALLKLQKIN-------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF- 106
              + +                  L    ++ LI E L    + + G+      V     
Sbjct: 60  QETRFELRERLGAAYDPAAFDDQRLRAEVLETLIQEALLMDVVGRLGLRVSDQEVQMQIL 119

Query: 107 --VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
                        + +   L  QG+    ++  L  +     +++        + E+   
Sbjct: 120 SDPAFVSEGRFDKDTYERLLRFQGLTPAMYEAQLRQKMSATQLIRA-----VSSSELATR 174

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
           A     K +  ++  I  +   + +++        +     + +R R          +  
Sbjct: 175 AELDTYKRLMGQKREISYLRLPLAEHRTDEPIDEARITAYYDSNRARFQSPEQVRLDYLV 234

Query: 225 KIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL 284
              D    K   + E DL   + +   +       P   +     + +    D     A+
Sbjct: 235 LDTDALSSKV-EVSEEDLRQLYASDQAR----FAQPERREVRHLLLKVDADADEAAARAV 289

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKL 308
              + A     +  +   E  K L
Sbjct: 290 LDEIQAIRARIQAGESFEELAKTL 313



 Score = 72.8 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 26/265 (9%), Positives = 67/265 (25%), Gaps = 13/265 (4%)

Query: 59  RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
              L +       +  ++  EL             G   + + +     +H  +  +   
Sbjct: 150 EAQLRQKMSATQLIRAVSSSELATRAELDTYKRLMGQKREISYLRLPLAEHRTDEPIDEA 209

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
             +++ D         +Q      +   +  +    K    E ++       +    +  
Sbjct: 210 RITAYYDSNRARFQSPEQVRLDYLV---LDTDALSSKVEVSEEDLRQLYASDQARFAQPE 266

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKI-HDVSIGKA 234
                   +  +   ++   +  + + +  R R           +  +         G  
Sbjct: 267 RREVRHLLLKVDADADEAAARAVLDEIQAIRARIQAGESFEELAKTLSQDPGSAAKGGSL 326

Query: 235 QYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQ 291
             +    + P F            + P  T  G   I +             ++  L A+
Sbjct: 327 GVIESGIMVPAFDQAAFALKTGELSEPVRTPFGYHLIEVVQILPSKAKPFEDVREPLRAE 386

Query: 292 NTPTKIEKHEAEYVKKLRSNAIIHY 316
               + E    E  ++L   A I Y
Sbjct: 387 LAKQRAEGLFYELAERL---ANISY 408


>gi|226942334|ref|YP_002797407.1| nitrogen fixation cis-trans peptidyl prolyl isomerase, NifM
           [Azotobacter vinelandii DJ]
 gi|226717261|gb|ACO76432.1| Nitrogen fixation cis-trans peptidyl prolyl isomerase, NifM
           [Azotobacter vinelandii DJ]
          Length = 293

 Score = 73.2 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/262 (11%), Positives = 83/262 (31%), Gaps = 10/262 (3%)

Query: 63  LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
           L  +++      I  Q  I + + +     +       +       H  +   S E    
Sbjct: 30  LSEEQLQQADRIIGRQRHIEDAVLR--SPDAIGVVIPPSQLEEAWAHIASRYESPEALQQ 87

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM--LKYGNLEMEIPANKQKMKNITVREYLI 180
            LD Q +     +  LA +     V+        +  + ++ +       +     ++  
Sbjct: 88  ALDAQALDAAGMRAMLARELRVEAVLDCVCAGLPEISDTDVSLYYFNHAEQFKVPAQHKA 147

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP--KDCNKLEKFASKIHDVSIGKAQYLL 238
           R +L +I ++  +N     +   +    RLR    +   +  K +     +  G    ++
Sbjct: 148 RHILVTINEDFPENTREAARTRIETILKRLRGKPERFAEQAMKHSECPTAMQGGLLGEVV 207

Query: 239 ESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPT 295
              L+P+      + ++   +    +  G   +               +   L  +    
Sbjct: 208 PGTLYPELDACLFQMARGELSPVLESPIGFHVLYCESVSPARQLTLEEILPRLRDRLQLR 267

Query: 296 KIEKHEAEYVKK-LRSNAIIHY 316
           + + ++ ++++  L+ NA +  
Sbjct: 268 QRKAYQRKWLESLLQQNATLEN 289


>gi|310820639|ref|YP_003952997.1| peptidylprolyl cis-trans isomerase [Stigmatella aurantiaca DW4/3-1]
 gi|309393711|gb|ADO71170.1| Peptidylprolyl cis-trans isomerase [Stigmatella aurantiaca DW4/3-1]
          Length = 519

 Score = 73.2 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/318 (8%), Positives = 69/318 (21%), Gaps = 68/318 (21%)

Query: 47  NGEVITDGD-----------ISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGI 95
           NG+ I   D           +  R   +        L    + +L+   L  Q  E+ GI
Sbjct: 46  NGKEIPLRDFSRVYAGQLNSLRNRGVPIPESYARQSLPSQVMDQLVTRELLSQAAERHGI 105

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP---DVVKNDF 152
               + +     ++A        +F  +           +     +         +    
Sbjct: 106 NPSDDELRKLIHENADFHKDGQFNFEQYKRALRDYYRTTEPKYEEELRRQLAAQKMLQVV 165

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK------------ 200
                  + E+ A  +K  N     +                   +++            
Sbjct: 166 NSGAVVSDDEVRARYEKDANQAKVVFARFLPTMYAAQVPAPTPAQLEEFRKAHNDEISTY 225

Query: 201 --------------------------------------RIKDAEESRLRLPKDCNKLEKF 222
                                                      +E             + 
Sbjct: 226 YESNRFMYQQAERAKARQILVKLAPDAAAQQKAEAKSRAEALHKEVTEGGKDFATVARER 285

Query: 223 ASKI-HDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           +       S G   ++  + L     + +   + N  + P  T+ G   + + +K+    
Sbjct: 286 SEDPGTKASGGDLGWVERASLEPTLAEAVFALAPNGVSQPIETKLGWHVVKVEEKQAAQD 345

Query: 281 E--IALKAYLSAQNTPTK 296
           +        ++      +
Sbjct: 346 KKLEEAAPEIATTLYKQQ 363


>gi|313105527|ref|ZP_07791795.1| putative peptidyl-prolyl cis-trans isomerase, PpiC [Pseudomonas
           aeruginosa 39016]
 gi|310878297|gb|EFQ36891.1| putative peptidyl-prolyl cis-trans isomerase, PpiC [Pseudomonas
           aeruginosa 39016]
          Length = 247

 Score = 73.2 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 56/229 (24%), Gaps = 14/229 (6%)

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
               +       +  R        +     +             I +    +V   ++  
Sbjct: 6   RVQLSENRDALERWMRARLAEKALYEQASAQDWQQRPQV--KTLIDAAARQIVLRTYLES 63

Query: 156 YG------NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
                     + E+ A  Q  K       L R     I  +        +KR ++     
Sbjct: 64  VSTVPEDYPSDAELQAAYQANKAQLAVPALYRVSQIFIAASAAGGLAEARKRAQELYRQA 123

Query: 210 LRLPKDCNKLEKFASKI-HDVSIGKAQYLLESD--LHPQFQNLLKKSQNNTTNPYVTQKG 266
                      K +       + G    LL     L      L +      + P     G
Sbjct: 124 ADG-DFAELARKHSDDPQTARNGGDIGGLLAQAQLLPAIRPALERLKVGAVSEPIQGANG 182

Query: 267 VEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
              + + ++RD        ++  L       + E+    Y+  L +NA 
Sbjct: 183 FHLVKLTERRDARLATLDEVRGRLRESLRAQRQEQIAKAYLDGLVNNAT 231


>gi|226355966|ref|YP_002785706.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus deserti
           VCD115]
 gi|226317956|gb|ACO45952.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor
           [Deinococcus deserti VCD115]
          Length = 338

 Score = 73.2 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 78/291 (26%), Gaps = 18/291 (6%)

Query: 35  SWAMSSRIRTTINGEVITDGDISK--RIALLKLQKINGELEKIA----VQELIVETLKKQ 88
           S A  S +   I  EVIT  + ++  R A+ ++    G   + +      +   E LK+ 
Sbjct: 41  SAAQDSAVVGRIGQEVITLAEFNRAFRQAVARVLNSQGVPFEESYMAEFNDARGEFLKQY 100

Query: 89  EIEKSGITF---DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
             +++                 +   +     E  + F D         +  L    +  
Sbjct: 101 LRDRAVYQLARGSVKADAAEIDKQVADARADFESDAEFADALSGTGYASEADLRAD-LER 159

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
            ++   ++    +      A      N+    ++ +    +                   
Sbjct: 160 QLIVGTYLRSIQSRFKFGDAVVAGNYNLNRTSFMRQREACARHILVKSQAEAQA-----V 214

Query: 206 EESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQ 264
            +               +         G      E D+   F         NT     ++
Sbjct: 215 VKELQAGGDFAKIATSKSQDPGSAAQGGDLGCFGEGDMVATFDKASFTGPLNTPQIVQSE 274

Query: 265 KGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            G   + +  + + G          +  Q T    +K+    + K+++ + 
Sbjct: 275 FGWHVVLVSKRTEAGMVPLAEAAPVIREQLTREAAQKYLNSQIAKMKTESF 325


>gi|260683172|ref|YP_003214457.1| putative peptidyl-prolyl isomerase [Clostridium difficile CD196]
 gi|260686770|ref|YP_003217903.1| putative peptidyl-prolyl isomerase [Clostridium difficile R20291]
 gi|260209335|emb|CBA62746.1| putative peptidyl-prolyl isomerase [Clostridium difficile CD196]
 gi|260212786|emb|CBE03939.1| putative peptidyl-prolyl isomerase [Clostridium difficile R20291]
          Length = 310

 Score = 73.2 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 97/301 (32%), Gaps = 31/301 (10%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS 99
           ++    +N   IT     K  A+L        +   ++ EL     KK   +   +    
Sbjct: 13  NKSLAKVNDVEITKEQYKKTKAVLSATNNY--INGQSLDELEKTLDKKGRNKLENVIISF 70

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-------- 151
              N    Q A++ GL+          Q + D         + +    V  +        
Sbjct: 71  MVDNELLYQEAKDKGLTPSKSEVDSKYQELEDKMNLNTSYKEKMDKAGVDKEYLKQEISR 130

Query: 152 ----------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN------Q 195
                     F  +    + ++ A     K     E +  + +     +K +       +
Sbjct: 131 DLAIDKNKKAFEDRINISDNDMEAYYTSHKKDFNVEEVSASQILISTLDKNKKEVSKDKK 190

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQF-QNLLKKS 253
             ++K+  +            +  +K++       + G+  Y  + D + +F + + K  
Sbjct: 191 EALKKKADNILTKIKNGESFESLAKKYSDDKATGKNGGQLGYFTKDDKNAEFTKEVFKLK 250

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           +N  +N + T  G   + + DKR+            +    + + +   E++KKL  +A 
Sbjct: 251 KNEVSNVFETSYGYHIVKVTDKRER---QKSFNECQSLIRESILNEKYIEHIKKLNEDAK 307

Query: 314 I 314
           I
Sbjct: 308 I 308


>gi|324325142|gb|ADY20402.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 288

 Score = 73.2 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/306 (11%), Positives = 88/306 (28%), Gaps = 46/306 (15%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +      L    ++ + +  + A S ++ T+  G+ IT  D   ++          +  K
Sbjct: 1   MKKAMLALAATSVIALSACGTGASSDKVVTSKAGD-ITKEDFYTQMK--------QQYGK 51

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             +  +++E +  +  +      D                   + F + L +QGI +   
Sbjct: 52  QVLNNMVMEKVLIKNYKVEDKDVDKKFD--------EMKKQYGDQFDTLLKQQGIKEETI 103

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
           K  +  Q      ++     K      +       +                        
Sbjct: 104 KNGVRAQLAQEKAIEKTITDKELKDNYKPEIKASHILVKD-------------------- 143

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK- 252
               +   K  +E   +        ++++         G   +     +  +F+    K 
Sbjct: 144 ----EATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGKMVKEFEEAAYKL 199

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIE--KHEAEYVKKLR 309
            ++  + P  +Q G   I + D ++        KA +  +    K +  +   + + K  
Sbjct: 200 KKDEVSEPVKSQFGYHIIKVTDIKEPEKSFEQSKADIKKEIVQKKAQDGEFMNDLMMKEI 259

Query: 310 SNAIIH 315
             A + 
Sbjct: 260 KKADVK 265


>gi|253996686|ref|YP_003048750.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera
           mobilis JLW8]
 gi|253983365|gb|ACT48223.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera
           mobilis JLW8]
          Length = 632

 Score = 73.2 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/256 (12%), Positives = 68/256 (26%), Gaps = 14/256 (5%)

Query: 53  DGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
             +   R  LL  Q  +G  +   +     +   K   +K  +T        +       
Sbjct: 147 KFEAEIRATLLAQQAQDGIAKLGFISTARADKTLKLLNQKRVVTVSELKTKDYLD----Q 202

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
             +S E+  ++ DK        +Q      +   +  +  +      + E+     +   
Sbjct: 203 VKVSPEEVKAYYDKHKDKLRDPEQVKIEFLL---LSASSLVPGIKVDDAEVKRYYDENSA 259

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH----- 227
                   R     I           Q+    A+     + K+    E+ A K       
Sbjct: 260 KFKGNEQRRASHILIGFGVNATPEQKQEAKNKAQALLDTIKKNPKSFEELAIKNSQDPGS 319

Query: 228 DVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR-DLGGEIALK 285
               G         +   F+    K   N  ++   ++ G   I + +         +LK
Sbjct: 320 ATKGGDLGSFGRGAMVKPFEEAAFKMKVNEVSDLVESEFGYHIIKVTEITGQGSDFESLK 379

Query: 286 AYLSAQNTPTKIEKHE 301
           A +       K +   
Sbjct: 380 AQIKGDLIFQKAQAEF 395



 Score = 64.7 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 53/151 (35%), Gaps = 11/151 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + +    ++      F+ + F +  I SY S A ++     ++G  I+    +  +
Sbjct: 1   MLDGIRSVAKGWVGKAILAFITVPFALFGIDSYLSQAGNNAAIAKVDGSEISVQAYANAM 60

Query: 61  ALLK-----------LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
             L+            Q  N E++ + + +LI E L ++EI+++        +  +    
Sbjct: 61  QNLRSRMQAEGKADQAQLDNPEVKAMVLDQLINEQLLEKEIQRANYKISDAQLATYITAM 120

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
                        + +         K++ A 
Sbjct: 121 PSFQKDGKFSQELYDELLQQNRYTPKKFEAE 151


>gi|228921035|ref|ZP_04084370.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838581|gb|EEM83887.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 293

 Score = 73.2 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/309 (12%), Positives = 88/309 (28%), Gaps = 50/309 (16%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKINGELE 73
           L      +       +++  +   S  + T  +    +T+ ++SK    L+ Q     L 
Sbjct: 11  LKKKKIFIGTIISCMMLALSACGSSDNVVTSKVGN--VTEKELSKE---LRQQYGESTLY 65

Query: 74  KIAVQE-LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           ++ + + L+ +     E  K  +    + +   F       GL  ED             
Sbjct: 66  QMMLSKALLDKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED------------- 112

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             K+ +  +  +   +K     K      +       +                      
Sbjct: 113 ELKEKMKPEIAFEKAIKATVTDKDVKDNYKPEMKVSHILVKD------------------ 154

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK 251
                 +K  K+ +E            ++++         G+           +F+    
Sbjct: 155 ------EKTAKEIKEKVNNGEDFAALAKQYSEDTGSKEQGGEISSFAPGQTVKEFEEAAY 208

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY----VK 306
           K      + P  T  G   I + DK++L     +K  +       +++    ++    V 
Sbjct: 209 KLDAGQVSEPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTTGKWKQQVVN 268

Query: 307 KLRSNAIIH 315
            L  +A I 
Sbjct: 269 DLLKDADIK 277


>gi|228984228|ref|ZP_04144410.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228775515|gb|EEM23899.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 287

 Score = 73.2 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/305 (11%), Positives = 90/305 (29%), Gaps = 46/305 (15%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S +I T+  G+ IT  +  +++          +  K 
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKIVTSKAGD-ITKDEFYEQMKT--------QAGKQ 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +++E +  +  +      D                   + F + L +QG+ +  FK
Sbjct: 52  VLNNMVMEKVLIKNYKVEDKEVDKRFDETK--------KQVGDQFDTLLKQQGMKEETFK 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             L  Q      ++     K      +       +                         
Sbjct: 104 NMLRAQLAQEKAIEKTITDKELKDNYKPEIKASHILVKD--------------------- 142

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              +   K  +E   +        ++++         G   +     +  +F++   K  
Sbjct: 143 ---EATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGKMVKEFEDAAYKLK 199

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
           ++  + P  +Q G   I + D ++        KA +  +    K +  +   + + K   
Sbjct: 200 KDEVSEPVKSQFGYHIIKVTDIKEPEKSFEQSKADIKKEIVQKKAQDGEFMNDLMMKEIK 259

Query: 311 NAIIH 315
            A + 
Sbjct: 260 KADVK 264


>gi|49480150|ref|YP_035301.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49331706|gb|AAT62352.1| protein export protein prsA [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 287

 Score = 73.2 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/305 (11%), Positives = 89/305 (29%), Gaps = 46/305 (15%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S +I T+  G+ IT  +  +++          +  K 
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKIVTSKAGD-ITKDEFYEQMKT--------QAGKQ 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +++E +  +  +      D                   + F + L +QGI +   K
Sbjct: 52  VLNNMVMEKVLIKNYKVEDKEVDKKYD--------EMKKQYGDQFDTLLKQQGIKEETLK 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +  Q      ++     K      +       +                         
Sbjct: 104 TGVRAQLAQEKAIEKTITDKELKDNYKPEIKASHILVKD--------------------- 142

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              +   K  +E   +        ++++         G   +     +  +F++   K  
Sbjct: 143 ---EATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGAGKMVKEFEDAAYKLK 199

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
           ++  + P  +Q G   I + D ++        KA +  +    K +  +   + + K   
Sbjct: 200 KDEVSEPVKSQFGYHIIKVTDIKEPEKSFEQSKADIKKELVAKKAQDGEFMNDLMMKEIK 259

Query: 311 NAIIH 315
            A + 
Sbjct: 260 KADVK 264


>gi|325920988|ref|ZP_08182874.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas gardneri ATCC
           19865]
 gi|325548522|gb|EGD19490.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas gardneri ATCC
           19865]
          Length = 656

 Score = 72.8 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/244 (9%), Positives = 72/244 (29%), Gaps = 8/244 (3%)

Query: 70  GELEKIAVQELIVETLK----KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
             L++  + + I E+      + E     +    +         A +T   ++       
Sbjct: 177 DSLQQSVIPQAIAESGFATKAEFERLLKLMGETRDVELAMLPPPAADTAPVSDAQIKQWY 236

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
                D    + + I+ +  +  K           +     ++K + +   + L   +L 
Sbjct: 237 DGHAQDFRQPETVTIEYVEINAAKLQPATAADEATLRKRYEEEKGRFVEPDQRLTSHILI 296

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHP 244
           S   +    +    K  K A E++          +  +       + G   ++ +  +  
Sbjct: 297 SAGSDPAAQKAAEAKAAKLAAEAKQPGADFAALAKANSQDPGSKGAGGDLGWVEKGTMVK 356

Query: 245 QFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAE 303
            F++        +   P  ++ G   I + + +   G+      +  Q    +++    +
Sbjct: 357 PFEDALFAMKAGDVVGPIKSEFGYHVIQLREVKGGQGKS--FEQVRDQLAAEQLKADADK 414

Query: 304 YVKK 307
               
Sbjct: 415 AFAD 418



 Score = 50.1 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/192 (10%), Positives = 46/192 (23%), Gaps = 34/192 (17%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTI-------------- 46
           M  K+    S +I       ++I F  V   SY     ++     +              
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFLFVIDNSYLGGIGANN-VAKVQAPPTWWKSAPSWW 59

Query: 47  ------NGEVITDGDISKRIALLKLQKINGELEK-------------IAVQELIVETLKK 87
                     I+  D   R    ++Q+   + +                + +L+ E + +
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQARMQERQRQGDNFDPRTFESRENKLQVLDQLVDEQVVR 119

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
              E +GI     TV  +                 +      G            +   +
Sbjct: 120 LGAEDAGIVIGDATVRDYITGIQAFQVDGKFSPDQYRAALAQGTPPRTPAQFDALVRDSL 179

Query: 148 VKNDFMLKYGNL 159
            ++         
Sbjct: 180 QQSVIPQAIAES 191


>gi|229084254|ref|ZP_04216537.1| Foldase protein prsA 2 [Bacillus cereus Rock3-44]
 gi|228699054|gb|EEL51756.1| Foldase protein prsA 2 [Bacillus cereus Rock3-44]
          Length = 283

 Score = 72.8 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 16/174 (9%), Positives = 42/174 (24%), Gaps = 6/174 (3%)

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           +  N    +    +                        +             +K   D +
Sbjct: 95  LESNRLKDEDDFKDQIRFKLAMDKAIKQSVTEKDVKANYKPEIKASHILVNDEKTANDIK 154

Query: 207 ESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQ 264
           +            ++ +         G   Y     +  +F+    K +    + P  + 
Sbjct: 155 KQLDEGASFEELAKQHSQDPGSKEKGGDLGYFGPGKMASEFEEAAYKLNVGEISKPIKSS 214

Query: 265 KGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE---AEYVKKLRSNAIIH 315
            G   I + DK++L     +K  +       ++          + + +  A I 
Sbjct: 215 HGYHIIKLTDKKELKPYDEVKDSIRKDLEEKRLADQTTGQKILLDEFK-KADIK 267


>gi|167589752|ref|ZP_02382140.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ubonensis Bu]
          Length = 310

 Score = 72.8 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/283 (12%), Positives = 66/283 (23%), Gaps = 55/283 (19%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           +NG  I    I + +   K       L      +LI   L +Q  +K         V   
Sbjct: 69  VNGVPIMQAQIDEAVRAGKAPDTPA-LRAALKNQLIARELFRQAAQKQHYDTKPQVVAAV 127

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
                                         +     ++    +++               
Sbjct: 128 ------------------------------EQAKALAMTQAYLRDQVKPAPVTDADVKAR 157

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
               +  +   EY    +                   K       +        +  +  
Sbjct: 158 YDAIVATLGENEYKPSAI-----------AVNDADTAKQLIARFRKGEDFAKLAQDNSKG 206

Query: 226 IHDVSIGKAQYL----------LESDLHPQFQNLLKKSQNNTT-NPYVTQKGVEYIAICD 274
                 G   ++           ++   P  + L+K  Q   T +P         + + D
Sbjct: 207 PAAAQGGALNWISFKTPITAGNTQNWPQPLAEALVKLPQGGLTRDPVQVGDAYWILRVDD 266

Query: 275 KRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           KR   +      K  L  Q     +EK  A+ V  L  NA I 
Sbjct: 267 KRPTQVPAFDQAKDMLRQQLEQVAMEKATAQVVADLIRNARIQ 309


>gi|226355582|ref|YP_002785322.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus deserti
           VCD115]
 gi|226317572|gb|ACO45568.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor
           [Deinococcus deserti VCD115]
          Length = 626

 Score = 72.8 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/303 (9%), Positives = 74/303 (24%), Gaps = 26/303 (8%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDIS--KRIALLKLQKINGELEKIAVQELIVETLK 86
            + S  S          +NG+ +T  ++   +R   +      G L        + + ++
Sbjct: 29  SLGSLFSSPNKGTPALVVNGKTVTAEELDGVRRSNPVLSSTDTGILGDDFKTFTVAQKVR 88

Query: 87  KQEIEKSGITFD---SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
           +  + ++         +           N+   ++ ++  L   G+ D  ++  L  Q  
Sbjct: 89  QVLVAQAASDIKVSRDDVNAEVKKIREANSLTDSKAWTDALQGVGLTDATYRAQLREQLA 148

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
               V+          E E                              Q     + + K
Sbjct: 149 VNRKVEELRKAVPAATEAEAKLYYDLNPEKFQS---------EARIIGRQIVVAKEAKAK 199

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD--------LHPQF-QNLLKKSQ 254
           +               +  +++      G    +            L  +        ++
Sbjct: 200 ELLAQVRGGADFAAVAKANSTEF-ADRGGALGPVENGKPRPVAQVALPAEVGAAAFALTK 258

Query: 255 NNTTNPYVTQKGVEYIAICD--KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
              T+   +      + +              KA      T  K      E+V+ L  + 
Sbjct: 259 GGITDVVASGDKFYIVKVEQYLAPATKPFAEAKADAITAVTEQKKNAALEEWVEGLEKDV 318

Query: 313 IIH 315
            I 
Sbjct: 319 KIE 321


>gi|284006425|emb|CBA71661.1| peptidyl-prolyl cis-trans isomerase D [Arsenophonus nasoniae]
          Length = 623

 Score = 72.8 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/387 (8%), Positives = 97/387 (25%), Gaps = 87/387 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVIT-------- 52
           M   + T+ +  +  +    +++ F +  + SY     S+     +NG  I+        
Sbjct: 1   MMDNLRTAANSLVLKIVFVIIILSFVLTGVGSYLIGGSSNH-VAKVNGTAISQVQLQQAF 59

Query: 53  --DGDI------SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
             +  +       +   +   ++    L + A++ LI  TL  Q   + G+T   N V  
Sbjct: 60  QQEKQVLQERLGDQFAEIASSEQGMQMLRRQALERLIGVTLLNQYSNQLGLTASDNQVKQ 119

Query: 105 FFVQH---ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
                     +    +E + + L +  +  +   Q +    I   + K            
Sbjct: 120 DIYNMPIFQTDGHFDSEKYRTILSQHNVNADDLAQEIRQNLINRQLSKMYITDEFVLPEE 179

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                 ++  K    + E+       +N  +    ++     + 
Sbjct: 180 VKSYAQLLLQQREVKTATLSLANYQSKQTVTDKELQDYYNAHQNSFISPEQVQVSYIKLD 239

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA------------------------- 223
               +    V+         +          + ++                         
Sbjct: 240 AASQRENVAVKDEELKNYYEQNIANFTQPAQKHYSMIQLPTEKEADSVVKSLAGGADFKQ 299

Query: 224 -------SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
                   K    + G   ++  +    +        +   +    +        + D +
Sbjct: 300 LVAEKSTDKFSAANHGALGWMEATSTPSEIIAANLTKKGQISAVIKSASNYIIFRLDDIK 359

Query: 277 D--LGGEIALKAYLSAQNTPTKIEKHE 301
              +    ++K  ++      K     
Sbjct: 360 PEVVKPFQSVKTEIANTLKNEKAINAF 386


>gi|304409715|ref|ZP_07391335.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS183]
 gi|307304071|ref|ZP_07583824.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           BA175]
 gi|304352233|gb|EFM16631.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS183]
 gi|306912969|gb|EFN43392.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           BA175]
          Length = 621

 Score = 72.8 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/271 (11%), Positives = 63/271 (23%), Gaps = 9/271 (3%)

Query: 49  EVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV--NYFF 106
           + I    +  +    +         +     L+          K        T    Y  
Sbjct: 139 QAILR-QLGYQPQAFRDMMRVDMTRRQLTAALVGTEFVLAGEAKQLAELQGQTRDVRYLV 197

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
           V  A     +        +        F     +   + ++   DF       + E  A 
Sbjct: 198 VDSAPFLATAVVTDEQVKNYYDANQGQFMSPEMVSLEYVELNAADFAKNNPVSDEEAQAY 257

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
            ++ K   V           +     +     +    D  +         +  +  +   
Sbjct: 258 YEEHKAQYVSNEKRLAAHILVMPGSDEAAAKAKAE--DLAKQLDSGADFADLAKANSDDT 315

Query: 227 -HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEI 282
                 GK  +     + P F   L   ++   +    T  G   I + D +        
Sbjct: 316 LSAEQGGKLDWFEPGVMDPAFDAALFALNKGQHSAVVKTDFGFHIIKLLDVQPGVTVPFA 375

Query: 283 ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            +KA + AQ    K          KL   + 
Sbjct: 376 DVKAKIVAQLQDKKAVDQFYSLQSKLADTSY 406



 Score = 67.4 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/238 (7%), Positives = 66/238 (27%), Gaps = 19/238 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+       I       V++ F    + SY   + +      +NG++IT  ++ +  
Sbjct: 1   MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYLG-STTDVPAAEVNGDIITKAELEQAY 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     +++  ++ L+ + L  Q  +  G+      +  
Sbjct: 60  QSERSRMEQQLGEMFAALSADEKYLQSIKQSVLERLVADKLIDQAAKAMGLRVSDEQIIA 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
                         D   +           + +     +  D+ +          E  + 
Sbjct: 120 AVKTEPAFQTDGKFDNDRYQAILRQLGYQPQAF--RDMMRVDMTRRQLTAALVGTEFVLA 177

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
              +++  +  +   +R ++              ++     + ++ +         ++
Sbjct: 178 GEAKQLAELQGQTRDVRYLVVDSAPFLATAVVTDEQVKNYYDANQGQFMSPEMVSLEY 235



 Score = 37.3 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 4/131 (3%)

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
               N     K+ +  E +R +  +   +++  A+ +  V+  K     +          
Sbjct: 487 EVKANITERLKQDQANEAARAKAQELMAQVKAGATDLGLVAKAKLGRGAQDVDAAIVGKA 546

Query: 250 LKKSQNNTTNPYVT---QKGVEYIAICDKRDLG-GEIALKAYLSAQNTPTKIEKHEAEYV 305
            +    +T+    T     G   +A+            L   L  +      E      +
Sbjct: 547 FQMPTPSTSPVVDTVGLANGYAVVALDKVNAAEGVSDELVNALKQRLNAQYSEADYRGLI 606

Query: 306 KKLRSNAIIHY 316
             L++NA + Y
Sbjct: 607 DSLKANAKVLY 617


>gi|126173842|ref|YP_001049991.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS155]
 gi|125997047|gb|ABN61122.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS155]
          Length = 621

 Score = 72.8 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/271 (11%), Positives = 63/271 (23%), Gaps = 9/271 (3%)

Query: 49  EVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV--NYFF 106
           + I    +  +    +         +     L+          K        T    Y  
Sbjct: 139 QAILR-QLGYQPQAFRDMMRVDMTRRQLTAALVGTEFVLAGEAKQLAELQGQTRDVRYLV 197

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
           V  A     +        +        F     +   + ++   DF       + E  A 
Sbjct: 198 VDSAPFLATAVVTDEQVKNYYDANQGQFMSPEMVSLEYVELNAADFAKNNPVSDEEAQAY 257

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
            ++ K   V           +     +     +    D  +         +  +  +   
Sbjct: 258 YEEHKAQYVSNEKRLAAHILVMPGSDEAAAKAKAE--DLAKQLDSGADFADLAKANSDDT 315

Query: 227 -HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEI 282
                 GK  +     + P F   L   ++   +    T  G   I + D +        
Sbjct: 316 LSAEQGGKLDWFEPGVMDPAFDAALFALNKGQHSAVVKTDFGFHIIKLLDVQPGVTVPFA 375

Query: 283 ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            +KA + AQ    K          KL   + 
Sbjct: 376 DVKAKIVAQLQDKKAVDQFYSLQSKLADTSY 406



 Score = 68.5 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/238 (7%), Positives = 66/238 (27%), Gaps = 19/238 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+       I       V++ F    + SY   + +      +NG++IT  ++ +  
Sbjct: 1   MLEKIRDGSQGLIAKGILVLVILSFAFAGVSSYLG-STTDVPAAEVNGDIITKAELEQAY 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     +++  ++ L+ + L  Q  +  G+      +  
Sbjct: 60  QSERSRMEQQLGEMFAALSADEKYLQSIKQSVLERLVADKLIDQAAKAMGLRVSDEQIIA 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
                         D   +           + +     +  D+ +          E  + 
Sbjct: 120 AVKTEPAFQTDGKFDNDRYQAILRQLGYQPQAF--RDMMRVDMTRRQLTAALVGTEFVLA 177

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
              +++  +  +   +R ++              ++     + ++ +         ++
Sbjct: 178 GEAKQLAELQGQTRDVRYLVVDSAPFLATAVVTDEQVKNYYDANQGQFMSPEMVSLEY 235



 Score = 38.5 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 4/131 (3%)

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
               N     K+ +  E +R +  +   +++  A+ +  V+  K     +          
Sbjct: 487 EVKANIAERLKQDQANEAARAKAQELMAQVKAGATDLGLVAKAKLGRGAQDVDAAIVGKA 546

Query: 250 LKKSQNNTTNPYVT---QKGVEYIAICDKRDLG-GEIALKAYLSAQNTPTKIEKHEAEYV 305
            +    +T+    T     G   +A+            L   L  +      E      +
Sbjct: 547 FQMPTPSTSPVVDTVGLANGYAVVALDKVNAAEGVSDELVNALKQRLNAQYSEADYRGLI 606

Query: 306 KKLRSNAIIHY 316
             L++NA + Y
Sbjct: 607 DSLKANAKVLY 617


>gi|330721964|gb|EGG99902.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium
           IMCC2047]
          Length = 471

 Score = 72.8 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/199 (10%), Positives = 68/199 (34%), Gaps = 5/199 (2%)

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
             +            +    +++  + ++ + DF       E EI    Q+  +    + 
Sbjct: 51  SDAEVQAYYEENLADYMSEESLKIEYLELKQADFASNIDVDEAEIEQLYQQETDALAAQQ 110

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYL 237
             R     I +    +    ++ I + +             ++++       + G   ++
Sbjct: 111 ERRAAHILITEEARSSNEA-EQLIIELQNKIKAGEDFAELAKRYSEDPGSAENGGDLGFV 169

Query: 238 LESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTP 294
            +    P+F+ +L   ++   ++   T+ G   I + + R  +       +  L+ +   
Sbjct: 170 EKGAFVPEFEQVLFSLNEGEVSDIVETEFGYHLIRLEELRTPEAEPFEMARERLAGELRF 229

Query: 295 TKIEKHEAEYVKKLRSNAI 313
            K E+      ++L++++ 
Sbjct: 230 RKAEEEFVAAAEELQNDSF 248



 Score = 36.2 bits (81), Expect = 6.3,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 84/269 (31%), Gaps = 11/269 (4%)

Query: 60  IALLKLQKINGELEKIAVQELIVE----TLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
           I L +L+    E  ++A + L  E      +++ +  +    + +      V+ A+N GL
Sbjct: 203 IRLEELRTPEAEPFEMARERLAGELRFRKAEEEFVAAAEELQNDSFSAGDLVEPAQNQGL 262

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
           S +    F  +QG G   F++   +      + + +        +  +   + K  N + 
Sbjct: 263 SIQTTEFFSRQQGSGIAAFEKVRRVAFSDELLTEGNNSDLIELSKDHVAVIRVKQHNPSK 322

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG--- 232
            + L           K +      +++ +     LR  K   +         +   G   
Sbjct: 323 PQALEEVASDIRSTLKARAAQQNAQKMGEQILVELRDGKTLQQASDDYGYPLNSYQGVNR 382

Query: 233 KAQYLLESDLHPQFQNLLKKSQNNTTN-PYVTQKGVEYI---AICDKRDLGGEIALKAYL 288
            A  +    L   F     +    TT     +Q     +    + +          K  +
Sbjct: 383 IANDVDSEILDELFALAKPRDSGATTGSLINSQGDFVILSLNKVSEGDASALSDPEKQAM 442

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           S         +   E+V    ++A I  +
Sbjct: 443 SRILAQQTGIQTLKEFVSGQLASAEIEKF 471


>gi|325846640|ref|ZP_08169555.1| putative peptidylprolyl isomerase PrsA3 [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481398|gb|EGC84439.1| putative peptidylprolyl isomerase PrsA3 [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 248

 Score = 72.8 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/287 (10%), Positives = 79/287 (27%), Gaps = 46/287 (16%)

Query: 36  WAMSSRIRTTINGEVITDGDISKRIALLK--LQKINGELEKIAVQELIVETLKKQEIEKS 93
               + I   +NG+ I+  D+   I  ++   Q +N +       EL+ + L   +  ++
Sbjct: 2   TEKQNEILAEVNGKKISQKDVVSFITQMQGGQQFLNPQGIHQIADELVNQELMYIDAIEN 61

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
            +  D    +                                  L  +++  +   +   
Sbjct: 62  KLDQDKEFTDQV-------------------------------KLTKENMLKNYAMHLLF 90

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                 + E+       K +  +    +     +      N+   +          ++  
Sbjct: 91  KDIKVSDDELKEYYDNNKEVIKQPKTYKASHILVDSEDEANKILEE----------IKAG 140

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAI 272
            +  K     S       G      +  +  +F+    K ++   + P  +Q G   I +
Sbjct: 141 LEFEKAADKYSTDKASKGGDLGEFPQGAMVKEFEEALDKLNEGEISKPVKSQFGYHIIKL 200

Query: 273 CDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
               D        +K  +       K ++   E   K++    +  Y
Sbjct: 201 DHTHDAHLPEFDEIKDRIHDTLLMIKRQEKYLEKTNKIKEKVDVKKY 247


>gi|57168166|ref|ZP_00367305.1| peptidyl-prolyl cis-trans isomerase [Campylobacter coli RM2228]
 gi|57020540|gb|EAL57209.1| peptidyl-prolyl cis-trans isomerase [Campylobacter coli RM2228]
          Length = 273

 Score = 72.8 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 97/302 (32%), Gaps = 41/302 (13%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI----NGELEKIAVQ 78
           +      +++  +  +++    T+NG+ I+D ++S+  A +   +         +K  +Q
Sbjct: 4   VSLIAAALIAGVTLNLNAATIATVNGKNISDTEVSEFFAPMLRGEDFKSLPDHQKKALLQ 63

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
           + I++ L  Q+ +K  +  D                                        
Sbjct: 64  QYIMQDLILQDAKKQNLEKDPLYKKEL-------------------------------ER 92

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
           A  SI  +V +   +        ++ A  ++ K   ++   ++     +   +       
Sbjct: 93  AKDSILVNVYQEKILNSIKVDSSKVKAFYEQNKEKYIKPAAVQAKHILVSSEQEAKDIIK 152

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN-- 256
           + +    +    +  +   +  K          G+  +  +S +   F +     +N   
Sbjct: 153 ELKGLKGKALDDKFSQLAQE--KSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTI 210

Query: 257 TTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           TT P  T  G   I   + R  +      +K  +       + +K   +  + L +NA +
Sbjct: 211 TTTPVKTNFGYHVILKENSRAKEQIKFDDVKKGIENGLKFEEFKKVINQKGQDLLNNAKV 270

Query: 315 HY 316
            Y
Sbjct: 271 EY 272


>gi|229091310|ref|ZP_04222528.1| Foldase protein prsA 1 [Bacillus cereus Rock3-42]
 gi|228692076|gb|EEL45817.1| Foldase protein prsA 1 [Bacillus cereus Rock3-42]
          Length = 149

 Score = 72.8 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 41/123 (33%), Gaps = 6/123 (4%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNN 256
           +K  K+ +E            ++++         G+           +F+    K     
Sbjct: 11  EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 70

Query: 257 TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY----VKKLRSNA 312
            + P  T  G   I + DK++L     +K  +       +++    ++    V +L  +A
Sbjct: 71  VSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKDA 130

Query: 313 IIH 315
            I 
Sbjct: 131 DIK 133


>gi|257459188|ref|ZP_05624307.1| putative periplasmic protein [Campylobacter gracilis RM3268]
 gi|257443573|gb|EEV18697.1| putative periplasmic protein [Campylobacter gracilis RM3268]
          Length = 296

 Score = 72.8 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 107/299 (35%), Gaps = 35/299 (11%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           ++F  +      +  + + +   ++ E IT  +++      ++QK+ G   + A++ LI 
Sbjct: 5   LLFSAMICAVCANAEVVNGVIAVVDDEPITGYELA------RVQKLTGASPQAAMEILIG 58

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           + L++ EI++ GI  +   ++      A    LS +   + + KQGI  + FK  +    
Sbjct: 59  QKLQQSEIKRRGIAVNDAEIDARLKAIADQNKLSLDQLKTAVQKQGINYDDFKANVRRTL 118

Query: 143 IWPDVVKNDFML-KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
           +   +  + F   ++      +     +  ++      I    +        ++     +
Sbjct: 119 LEEKLYGSIFADVQHRTTPENVKKFYSQNSSLFTTFDSITLTRYIAKSQAPLDRIRTNPK 178

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNP 260
           ++ ++   ++                         L  + +    + +     Q   +  
Sbjct: 179 LRPSDVYVMK-----------------------GTLKANQMDEGLKYIVTNVEQGKFSPI 215

Query: 261 YVTQKGVEYIAICDK---RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             T+ G E   + DK   R L  +      +    T  + +K   E+  +LRSNA I  
Sbjct: 216 IPTRNGYEMFYVNDKKGLRTLDFDSVQDKAIEGYVTSER-KKAITEFNDRLRSNANIRI 273


>gi|126740048|ref|ZP_01755738.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseobacter sp.
           SK209-2-6]
 gi|126718867|gb|EBA15579.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseobacter sp.
           SK209-2-6]
          Length = 265

 Score = 72.8 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 59/205 (28%), Gaps = 8/205 (3%)

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            E     ++         +     +++   +++ +  +K    + EI A   +       
Sbjct: 54  QEARRQKIEADPHEVEPGRFETDEEALIRGLLETEVDVK-SPTDDEIKAEWARDPARFRS 112

Query: 177 EYLIRTVLFSIPDNKLQNQ---GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGK 233
             L          +    +     ++K          +     +  +K +      + G 
Sbjct: 113 APLWEVSHILCACDPRDEEGREKALKKAQFLTATLLAKPSIFASLAKKESDCGSKEAGGS 172

Query: 234 AQYLLESDLHPQFQNL-LKKSQNNTT-NPYVTQKGVEYIAI--CDKRDLGGEIALKAYLS 289
              L   D  P+F+ +     Q   T  P +++ G   + +    +       A K  + 
Sbjct: 173 LGQLRPGDSVPEFEQVLFDLEQGQITAEPVLSRHGYHIVRMDALAEGQELPFEAAKRSIM 232

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAII 314
                    +    YV+KL   A I
Sbjct: 233 LAMEKAAWTRAAQAYVQKLIEGAEI 257


>gi|310829352|ref|YP_003961709.1| hypothetical protein ELI_3795 [Eubacterium limosum KIST612]
 gi|308741086|gb|ADO38746.1| hypothetical protein ELI_3795 [Eubacterium limosum KIST612]
          Length = 497

 Score = 72.8 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/306 (10%), Positives = 78/306 (25%), Gaps = 29/306 (9%)

Query: 34  KSWAMSSRIRTTINGEVITD-----GDISKRIALLKLQKINGELEKIAVQE--------- 79
                  ++   IN E I         I++ +          + +  +V+E         
Sbjct: 172 NPEEELDQVVGKINDEEIKRGIYNYYYINEEMTSYYSGGQGLQTDDESVKETNKSIFNSI 231

Query: 80  -----LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
                LI    +     K     ++        +    T      +           + +
Sbjct: 232 AQNKALIKYCEEYNIEIKQEEIDNALQTKQSIQKMMFQTDDELNQYLENYFLTKEKYDEY 291

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
           ++  A        ++          + ++    +  K+      +    + +        
Sbjct: 292 QKEDARGIAAGQAIQAKVTEDVKVSDTDLRKYYKDHKDSYDESTVSAEHILT-------E 344

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK-KS 253
              +   I D  +           + ++ S              +  +  +F +      
Sbjct: 345 DEALANEIYDKAKDVKTKEDFEKIMNEYKSNEKVKEATDLGAFNKEKMVSEFSDAAFGME 404

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           +N+ + P  T+ G   I + DK D G       K  ++      K  +   +  + L   
Sbjct: 405 KNSVSKPVKTEYGYHIIYVYDKNDAGEASFEDKKDEITKAVKEEKGTEDYNKLKEDLLKK 464

Query: 312 AIIHYY 317
             I  Y
Sbjct: 465 EKIDIY 470


>gi|326318802|ref|YP_004236474.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323375638|gb|ADX47907.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 299

 Score = 72.8 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 11/170 (6%), Positives = 41/170 (24%), Gaps = 5/170 (2%)

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
                     +       + +       + +   +              + +I+  E+  
Sbjct: 109 AKVDKDNMPSDAVAEGLARNIYKAKPERFKVPEQVQVRHILIAGTGADSRAQIEKIEQEL 168

Query: 210 LRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKG 266
                     ++ +  K      G   +     + P+F             +    ++ G
Sbjct: 169 KGGADFAQLAKERSADKGSAAKGGDLGFFEAGKMVPEFDKAAFALTKPGQLSGIVESKFG 228

Query: 267 VEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              + +  +          +++ L  +      ++      + L+  A I
Sbjct: 229 YHILQLEGRHAARTRSFDEVRSELMQEVRANVQQEARVADAQALQQEAKI 278


>gi|289434727|ref|YP_003464599.1| protein export protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170971|emb|CBH27513.1| protein export protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 293

 Score = 72.8 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/312 (9%), Positives = 82/312 (26%), Gaps = 47/312 (15%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           ++ F K++ +     +  +    S              +   IT  D+ + +        
Sbjct: 1   MTKFKKIMISLITATLLILAGCGSSA--------VVKTDAGNITQDDLYEAMKT------ 46

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
                   VQ+L  E + + +   +    ++                  E +    +   
Sbjct: 47  --TYGNEVVQQLTFEKILEDKYTVTEKEVNAEY------------KKYEEQYGDSFESTL 92

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
              N  K        +  +V+          +  +    +        +  +R +L    
Sbjct: 93  ASSNLTKTSFKENIKYNLLVQKATEANIDVSDSTLKKYYKTW----QPDITVRHIL---- 144

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQ 247
                     +   K+ +       K  +  +++++      + G        ++   F+
Sbjct: 145 -------VDDEATAKEVQTKLKNGEKFTDLAKEYSTDTATSTNGGLLDPFGTGEMDEAFE 197

Query: 248 NLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA-QNTPTKIEKHEAEY 304
                 +  ++ +    T  G   I +  K D       KA +           ++    
Sbjct: 198 KAAYALEKTDDVSGIVKTSYGYHLIQLVKKTDKTTYSKDKAKVKEAYIQSQLTSENMTAA 257

Query: 305 VKKLRSNAIIHY 316
           +KK    A I  
Sbjct: 258 LKKELKAANIDI 269


>gi|323526043|ref|YP_004228196.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1001]
 gi|323383045|gb|ADX55136.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1001]
          Length = 646

 Score = 72.8 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/263 (9%), Positives = 68/263 (25%), Gaps = 17/263 (6%)

Query: 52  TDGDISKRIAL-LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           T     +R+   +  Q++   ++  A      +TL +   E +    +   + +    +A
Sbjct: 149 TPDQYDERVRYSIATQQLPASIQGSAFTS---KTLAQHLTELAEQQREVQGIAFHPRDYA 205

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                +     ++ D                 +                + ++       
Sbjct: 206 AKVQPTDAQLQAYYDAHRNDFATPATATIQYLVMSP---ATLAASVQPSDADLKKYYDDN 262

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH--- 227
                 E  +R     I   K  +     K  + AEE   ++    ++  + A +     
Sbjct: 263 IAHYRTEGQVRASHILIAAPKDASPADKAKAKQKAEELLAQVKAHPDQFAQIAQQNSQDP 322

Query: 228 --DVSIGKAQYLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL--GG 280
                 G   Y     +         +    ++  +    T  G   + + D +      
Sbjct: 323 GSAAKGGDLGYFGRGMIAGGQAFDDAVFALKKDEVSGIVQTDFGYHIVKVTDVKPAVTRP 382

Query: 281 EIALKAYLSAQNTPTKIEKHEAE 303
              +K  ++         K  ++
Sbjct: 383 FDEVKDQIARDLKTQLASKAFSD 405



 Score = 54.3 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/228 (8%), Positives = 56/228 (24%), Gaps = 15/228 (6%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN 69
              +  +    ++     V I  ++ +   S    ++NG  IT  +    +     +   
Sbjct: 9   KRLMMFMLILVIVPGLGFVGIQGFRGFFDESANVASVNGHKITRAEYDNAMRQQLDRARQ 68

Query: 70  -------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQHARNTG 114
                         E     +  LI + +   E ++  +T   + V           +  
Sbjct: 69  MLGAQFDIKAFDTPERRSEMLDGLIEQRVLADETQRLHLTASDDAVRRVLLNDPVISSLK 128

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
                      KQ +           + +   +                    Q +  + 
Sbjct: 129 KPDGSIDVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPASIQGSAFTSKTLAQHLTELA 188

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            ++  ++ + F   D   + Q    +     +  R           ++
Sbjct: 189 EQQREVQGIAFHPRDYAAKVQPTDAQLQAYYDAHRNDFATPATATIQY 236


>gi|229101746|ref|ZP_04232463.1| Foldase protein prsA 1 [Bacillus cereus Rock3-28]
 gi|228681694|gb|EEL35854.1| Foldase protein prsA 1 [Bacillus cereus Rock3-28]
          Length = 287

 Score = 72.8 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/305 (11%), Positives = 88/305 (28%), Gaps = 46/305 (15%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S +I T+  G+ IT  +   ++          +  K 
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKIVTSKAGD-ITKEEFYNQMKT--------QAGKQ 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +++E +  +  +      D                   + F + L +QG+ +  FK
Sbjct: 52  VLNNMVMEKVLIKNYKVEDKDVDKRFDETK--------KQVGDQFDTLLKQQGMKEETFK 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +         ++     K      +       +                         
Sbjct: 104 NTIRASLAQEKAIEKTITDKELKDNYKPQIKASHILVKD--------------------- 142

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              +   K  +E   +        ++++         G   +     +  +F++   K  
Sbjct: 143 ---EATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFEHGKMVKEFEDAAYKLK 199

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRS 310
           ++  + P  TQ G   I + D ++        KA +  +    K++      + + K   
Sbjct: 200 KDEVSEPVKTQFGYHIIKVTDIKEPEKSFEQSKADIKKELIAKKMQDGAFMNDLMMKEIK 259

Query: 311 NAIIH 315
            A + 
Sbjct: 260 KADVK 264


>gi|91205025|ref|YP_537380.1| hypothetical protein RBE_0210 [Rickettsia bellii RML369-C]
 gi|122426012|sp|Q1RK23|Y210_RICBR RecName: Full=Uncharacterized protein RBE_0210; Flags: Precursor
 gi|91068569|gb|ABE04291.1| unknown [Rickettsia bellii RML369-C]
          Length = 294

 Score = 72.8 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 23/302 (7%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGELEK 74
           ++  I    +  + A +S I   +N E IT  +   R  ++             N +L  
Sbjct: 4   LLLIITVFFTCSAVAETSNIVALVNNEPITLNEFRARKKMIMALNNVEEVTPAQNKQLSD 63

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
           IA++ LI E+L  Q             ++           +       +L  + +  + F
Sbjct: 64  IAIKSLIDESLLFQYYGDKE--ISQEEIDNAIKSIEDRNKMPHGSLLQYLKSRSVNPDSF 121

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
              +  + I  +V+             EI           V   +         D     
Sbjct: 122 ISQIKSELIKMNVLSG-LSRSVQVSNKEIDVAILSSDQKEVEVSMQIFTSKDKSDKTFAQ 180

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ 254
              ++ ++K+  + +  L ++   +     K+  +               +   +   + 
Sbjct: 181 MNNLKSKLKNCSDVKKSLYENFATMTVITDKLSKIE------------EAKQTIVKDLNP 228

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           N T+N +      E + +C K+ L        Y+    T  KI +   ++ + +   A I
Sbjct: 229 NQTSNVFEKYNEFEIVQVCTKKILNISEDENNYVVNFLTNKKISQKAQKFFEDMHKKAYI 288

Query: 315 HY 316
             
Sbjct: 289 KI 290


>gi|166710933|ref|ZP_02242140.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 656

 Score = 72.8 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/249 (8%), Positives = 69/249 (27%), Gaps = 5/249 (2%)

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
           AL++       + +            + E     +    +         A +T   ++  
Sbjct: 173 ALVRDSLQQSVIPQAVADSGFATKS-EFERLLKLMGETRDVELAMLPPPAMDTAPVSDAQ 231

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
                     D    + + I+ +  +              +     ++K + +   + L 
Sbjct: 232 IKQWYDGHTQDFRQPEAVTIEYVELNAATMRPATAADEATLRKRYEEEKARFVEPDQRLA 291

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
             +L S   +    +    K  K A E++          +  +       + G   ++ +
Sbjct: 292 SHILISAGSDAAAQKAAEAKAAKLAAEAKAPGADFAALAKANSQDPGSKDAGGDLGWVEK 351

Query: 240 SDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE 298
             +   F++        +   P  ++ G   I + + +   G+      +  Q    +++
Sbjct: 352 GTMVKPFEDALFSMKAGDVVGPIKSEFGYHVIQLREVKGGQGKS--FEQVRDQLAAEQLK 409

Query: 299 KHEAEYVKK 307
               +    
Sbjct: 410 ADTDKAFAD 418



 Score = 50.8 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 58/236 (24%), Gaps = 34/236 (14%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTI----N--------- 47
           M  K+    S +I       ++I F  V   SY     ++     +    N         
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFLFVIDNSYLGGIGANN-VAKVQAPPNWWKSAPSWW 59

Query: 48  -------GEVITDGDISKRIALLKLQKINGELEK-------------IAVQELIVETLKK 87
                     I+  D   R    ++Q+   + E                + +L+ E + +
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQARMQERKRQGENFDPRTFESRENKLQVLDQLVDEQVVR 119

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
              E +GI     TV  +                 +      G            +   +
Sbjct: 120 LGAEDAGIVIGDATVREYIANIQAFQVDGKFSPDQYRAALAQGTPPRTPAQFDALVRDSL 179

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
            ++       +      +  +++  +      +   +   P          Q +  
Sbjct: 180 QQSVIPQAVADSGFATKSEFERLLKLMGETRDVELAMLPPPAMDTAPVSDAQIKQW 235


>gi|217973906|ref|YP_002358657.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS223]
 gi|217499041|gb|ACK47234.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS223]
          Length = 621

 Score = 72.8 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/271 (11%), Positives = 63/271 (23%), Gaps = 9/271 (3%)

Query: 49  EVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV--NYFF 106
           + I    +  +    +         +     L+          K        T    Y  
Sbjct: 139 QAILR-QLGYQPQAFRDMMRVDMTRRQLTAALVGTEFVLAGEAKQLAELQGQTRDVRYLV 197

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
           V  A     +        +        F     +   + ++   DF       + E  A 
Sbjct: 198 VDSAPFLATAVVTDEQVKNYYDANQGQFMSPEMVSLEYVELNAADFAKNNPVSDEEAQAY 257

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
            ++ K   V           +     +     +    D  +         +  +  +   
Sbjct: 258 YEEHKAQYVSNEKRLAAHILVMPGSDEAAAKAKAE--DLAKQLDSGADFADLAKANSDDT 315

Query: 227 -HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEI 282
                 GK  +     + P F   L   ++   +    T  G   I + D +        
Sbjct: 316 LSAEQGGKLDWFEPGVMDPAFDAALFALNKGQHSAVVKTDFGFHIIKLLDVQPGVTVPFA 375

Query: 283 ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            +KA + AQ    K          KL   + 
Sbjct: 376 DVKAKIVAQLQDKKAVDQFYSLQSKLADTSY 406



 Score = 67.4 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/238 (7%), Positives = 66/238 (27%), Gaps = 19/238 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+       I       V++ F    + SY   + +      +NG++IT  ++ +  
Sbjct: 1   MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYLG-STTDVPAAEVNGDIITKAELEQAY 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     +++  ++ L+ + L  Q  +  G+      +  
Sbjct: 60  QSERSRMEQQLGEMFAALSADEKYLQSIKQSVLERLVADKLIDQAAKAMGLRVSDEQIIA 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
                         D   +           + +     +  D+ +          E  + 
Sbjct: 120 AVKTEPAFQTDGKFDNDRYQAILRQLGYQPQAF--RDMMRVDMTRRQLTAALVGTEFVLA 177

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
              +++  +  +   +R ++              ++     + ++ +         ++
Sbjct: 178 GEAKQLAELQGQTRDVRYLVVDSAPFLATAVVTDEQVKNYYDANQGQFMSPEMVSLEY 235



 Score = 38.1 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 4/131 (3%)

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
               N     K+ +  E +R +  +   +++  A+ +  V+  K     +          
Sbjct: 487 EVKANITERLKQDQANEAARAKAQELMAQVKAGATDLGLVAKAKLGRGAQDVDAAIVGKA 546

Query: 250 LKKSQNNTTNPYVT---QKGVEYIAICDKRDLG-GEIALKAYLSAQNTPTKIEKHEAEYV 305
            +    +T+    T     G   +A+            L   L  +      E      +
Sbjct: 547 FQMPTPSTSPVVDTVGLANGYAVVALDKINAAEGVSDELVNALKQRLNAQYSEADYRGLI 606

Query: 306 KKLRSNAIIHY 316
             L++NA + Y
Sbjct: 607 DSLKANAKVLY 617


>gi|229154723|ref|ZP_04282838.1| Foldase protein prsA 1 [Bacillus cereus ATCC 4342]
 gi|228628671|gb|EEK85383.1| Foldase protein prsA 1 [Bacillus cereus ATCC 4342]
          Length = 287

 Score = 72.8 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/305 (11%), Positives = 87/305 (28%), Gaps = 46/305 (15%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S ++ T+  G+ IT  D   ++          +  K 
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKVVTSKAGD-ITKEDFYTQMK--------QQYGKQ 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +++E +  +  +      D                   + F + L +QGI +   K
Sbjct: 52  VLNNMVMEKVLIKNYKVEDKDVDKKFD--------EMKKQYGDQFDTLLKQQGIKEETIK 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +  Q      ++     K      +       +                         
Sbjct: 104 NGVRAQLAQEKAIEKTITDKELKDNYKPEIKASHILVKD--------------------- 142

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              +   K  +E   +        ++++         G   +     +  +F+    K  
Sbjct: 143 ---EATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGKMVKEFEEAAYKLK 199

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
           ++  + P  +Q G   I + D ++        KA +  +    K +  +   + + K   
Sbjct: 200 KDEVSEPVKSQFGYHIIKVTDIKEPEKSFEQSKADIKKEIVQKKAQDGEFMNDLMMKEIK 259

Query: 311 NAIIH 315
            A + 
Sbjct: 260 KADVK 264


>gi|21673541|ref|NP_661606.1| hypothetical protein CT0711 [Chlorobium tepidum TLS]
 gi|21646651|gb|AAM71948.1| lipoprotein, putative [Chlorobium tepidum TLS]
          Length = 450

 Score = 72.8 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/312 (12%), Positives = 91/312 (29%), Gaps = 45/312 (14%)

Query: 13  IKLLTTYFVLIIFC-IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ----K 67
           +K +T+ F +++F  +V      +   +S +   +NG  IT+  I        +     +
Sbjct: 1   MKKITSLFFVLLFAILVGCSEKSAQESNSGVAAVVNGVEITNRQIDYFYQRTAMPGMSAE 60

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
            +  L++  + +LI   L   + ++  +  + +     +          AE         
Sbjct: 61  DSANLKRRILSDLIRIELLAGKAKEMKLDNNPDYSMALYAAQKNVLAGLAE--------- 111

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
                                +     +      +  +  Q    +     L        
Sbjct: 112 ---------------------RKLAGNQAPVTPDQAESVVQNAPQLFAGRKLYVFEEVIF 150

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
           P   +     +     +       L +   K + F S +          L    L     
Sbjct: 151 PGVDMPLLESLDAMATNGAPLSGLLDELKAKKKPFNSSLKA--------LTSEQLPAPIL 202

Query: 248 NLLKKSQNNTTNPYVTQKGV-EYIAICDKRDLGGE-IALKAYLSAQNTPTKIEKHEAEYV 305
            +L K + NT     +   V   + + D      E    +   +A     +  +  ++ +
Sbjct: 203 AVLNKLKPNTPQVVRSGDKVSVILVLHDAIPAPLEGDPARRAAAAMIEANQRNQALSKAM 262

Query: 306 KKLRSNAIIHYY 317
           ++L  NA I YY
Sbjct: 263 QELLDNAKITYY 274


>gi|47567527|ref|ZP_00238238.1| rotamase family protein [Bacillus cereus G9241]
 gi|47555722|gb|EAL14062.1| rotamase family protein [Bacillus cereus G9241]
          Length = 288

 Score = 72.8 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/305 (11%), Positives = 93/305 (30%), Gaps = 45/305 (14%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S +I T+  G+ IT  +  +++        N +  K 
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKIVTSKAGD-ITKEEFYEQMK-------NSQTGKQ 52

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +++E +            D   V+  F +  +  G   +                 
Sbjct: 53  TLNNMVMEKVLI-----KNYKVDDKEVDKKFDEMKKQLGDQFDTL--------------- 92

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
                      + +            +  A ++ + +  +++Y    +  S    K +  
Sbjct: 93  ------LKQQGLKEETVKNGVRASLAQEKAIEKTITDKELKDYYKPEIKASHILVKDEAT 146

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
               K      E   +        ++++         G   +     +  +F++   K  
Sbjct: 147 AKKVK------EELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGKMVKEFEDAAYKLK 200

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
           ++  + P  +Q G   I + D ++        KA +  +    K++  +   + + K   
Sbjct: 201 KDEVSEPVKSQFGYHIIKVTDIKEPEKSFEQSKADIKKEIVQKKMQDGQFMNDLMMKEIK 260

Query: 311 NAIIH 315
            A + 
Sbjct: 261 KADVK 265


>gi|84622593|ref|YP_449965.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|84366533|dbj|BAE67691.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 656

 Score = 72.8 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 21/244 (8%), Positives = 71/244 (29%), Gaps = 8/244 (3%)

Query: 70  GELEKIAVQELIVETLK----KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
             L++  + + I ++      + E     +    +         A +T   ++       
Sbjct: 177 DSLQQSVIPQAIADSGFATKSEFERLLKLMGETRDVELAMLPPPAMDTAPVSDAQIKQWY 236

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
                D    + + I+ +  +              +     ++K + +   + L   +L 
Sbjct: 237 DGHTQDFRQPETVTIEYVELNAATMRPATAADEATLRKRYEEEKARFVEPDQRLASHILI 296

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHP 244
           S   +    +    K  K A E++          +  +       + G   ++ +  +  
Sbjct: 297 SAGSDAAAQKAAEAKAAKLAAEAKAPGADFAALAKANSQDPGSKDAGGDLGWVEKGTMVK 356

Query: 245 QFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAE 303
            F++        +   P  ++ G   I + + +   G+      +  +    +++    +
Sbjct: 357 PFEDALFSMKAGDVVGPIKSEFGYHVIQLREVKGGQGKS--FEQVRDKLAAEQLKADADK 414

Query: 304 YVKK 307
               
Sbjct: 415 AFAD 418



 Score = 50.4 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 58/236 (24%), Gaps = 34/236 (14%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTI----N--------- 47
           M  K+    S +I       ++I F  V   SY     ++     +    N         
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFLFVIDNSYLGGIGANN-VAKVQAPPNWWKSAPSWW 59

Query: 48  -------GEVITDGDISKRIALLKLQKINGELEK-------------IAVQELIVETLKK 87
                     I+  D   R    ++Q+   + E                + +L+ E + +
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQARMQERQRQGENFDPRTFESRENKLQVLDQLVDEQVVR 119

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
              E +GI     +V  +                 +      G            +   +
Sbjct: 120 LGAEDAGIVIGDASVRDYIANIQAFQVDGKFSPDKYRAALAQGTPPRTPAQFDALVRDSL 179

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
            ++       +      +  +++  +      +   +   P          Q +  
Sbjct: 180 QQSVIPQAIADSGFATKSEFERLLKLMGETRDVELAMLPPPAMDTAPVSDAQIKQW 235


>gi|28198390|ref|NP_778704.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Temecula1]
 gi|182681032|ref|YP_001829192.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           M23]
 gi|28056460|gb|AAO28353.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Temecula1]
 gi|182631142|gb|ACB91918.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           M23]
 gi|307579500|gb|ADN63469.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 655

 Score = 72.8 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 47/162 (29%), Gaps = 4/162 (2%)

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
                   +    + Q+       +     +L +   +    +    K  K  EE+R   
Sbjct: 263 RPTPSEAMLRKRYDAQQRGEAQNEQRKAAHILITAGADAASQKVAEAKAAKLVEEARKPG 322

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYI 270
                     +       + G   ++    +   F++            P  T+ G   I
Sbjct: 323 ADFAALARINSQDPGSKDAGGDLGWVQRGMMVKPFEDALFAMKVGEVVGPIKTEFGNHVI 382

Query: 271 AICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
            + + +        A++  L+A+ T   I+K   +   KL  
Sbjct: 383 KLEEIKAAKQLPFEAVRDQLAAEQTKEDIDKAFNDVTGKLMD 424


>gi|30995417|ref|NP_439165.2| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae Rd
           KW20]
 gi|3183576|sp|P44092|PPID_HAEIN RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase
           D; AltName: Full=Rotamase D
          Length = 622

 Score = 72.8 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 47/395 (11%), Positives = 110/395 (27%), Gaps = 84/395 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           +  K+    +  I       + + F +  +  Y  ++ +      +NGEVI+  D   R 
Sbjct: 2   LIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYL-FSSNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  AL---LKLQKINGE-------------LEKIAVQELIV-----------------ETLKK 87
                ++ Q+                 L +  V  +I                  E +K+
Sbjct: 61  NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
             +            N  + +  +   L+++ ++S L      +         + I P  
Sbjct: 121 AIVTDPNFQVKGKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVPAQ 180

Query: 148 VK-------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL---- 184
           VK                    D M K    + EI    +  +   V+   ++       
Sbjct: 181 VKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYIDLS 240

Query: 185 ------------------------FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
                                     +  +    Q   ++  K A E   +     +  +
Sbjct: 241 ADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQFANEQDAKVAYEELQKGANFADVAK 300

Query: 221 KFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL 278
             +  KI   + G   ++ E++L   F++          + P         + + +++  
Sbjct: 301 AKSLDKISGENGGDLGWVNENELPKAFEDAAAALQVGQYSQPINVDGNYHIVLVQERK-A 359

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                +KA ++     + +E       K+    A 
Sbjct: 360 QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAF 394


>gi|71276515|ref|ZP_00652790.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           Dixon]
 gi|71901997|ref|ZP_00684044.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           Ann-1]
 gi|170729736|ref|YP_001775169.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa M12]
 gi|71162692|gb|EAO12419.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           Dixon]
 gi|71728242|gb|EAO30426.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           Ann-1]
 gi|167964529|gb|ACA11539.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa M12]
          Length = 655

 Score = 72.8 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/273 (10%), Positives = 75/273 (27%), Gaps = 19/273 (6%)

Query: 57  SKRIALLKLQKIN---GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
             R  LL  Q+      ++ +  V+ ++  ++    I  SG   ++       +      
Sbjct: 152 QDRYRLLLAQEPTMRTPQMYENYVRSMMQLSMIPSTIFDSGFVPNTELERILALLGQTRN 211

Query: 114 GLS---AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF---------MLKYGNLEM 161
                         +   +    +          P+ +  ++                 +
Sbjct: 212 AELVTLPALKLDMAEISNMQIKEWYAAHRDDFRQPETLSFEYVDLDAAHLPRPTPSEAVL 271

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
               + Q+       +     +L +   +    +    K  K  EE+R            
Sbjct: 272 RKRYDAQQRGEAQNEQRKAAHILITAGADAASQKVAEAKAAKLVEEARKPGADFAALARI 331

Query: 222 FASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
            +       + G   ++    +   F++            P  T+ G   I + + +   
Sbjct: 332 NSQDPGSKDAGGDLGWVQRGMMVKPFEDALFAMKVGEVVGPIKTEFGNHVIKLEEIKAAK 391

Query: 280 --GEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
                A++  L+A+ T   ++K   +   KL  
Sbjct: 392 QLPFEAVRDQLAAEQTKEDLDKEFNDVTGKLMD 424


>gi|260219454|emb|CBA26299.1| Probable parvulin-type peptidyl-prolyl cis-trans isomerase
           [Curvibacter putative symbiont of Hydra magnipapillata]
          Length = 239

 Score = 72.4 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 76/278 (27%), Gaps = 48/278 (17%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKIN--GELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG+ +    I      +         E++    +E+I   +  QE +  G+     
Sbjct: 5   VAIVNGKAVPKTRIDALAQQVARSGRPVTPEMQGQLREEVIAREIFVQEAQARGLDASDE 64

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
             N                                +      +  ++  +         E
Sbjct: 65  YKNQL------------------------------ELTKQSILIRELFGDFQKKNPVTDE 94

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
                  +       +EY  R +L    D        ++K             K  +  +
Sbjct: 95  ETKAEYDKFASANAGKEYRARHILVEKEDQAKALIAQLKK-----------GAKFEDLAK 143

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTN-PYVTQKGVEYIAICDKRD 277
           K +       + G   +   S    +F +     S+   T+ P  TQ G   I + D R+
Sbjct: 144 KNSKDPGSGANGGDLDWANASSYVKEFSDALTGLSKGKMTDAPVKTQFGFHIIRLEDVRE 203

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                     +  Q      ++  A++ + LR+ A + 
Sbjct: 204 AQL--PKYEDVKPQIAQQLQQQKLAKFQEDLRAKAKVE 239


>gi|153000126|ref|YP_001365807.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS185]
 gi|160874748|ref|YP_001554064.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS195]
 gi|151364744|gb|ABS07744.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS185]
 gi|160860270|gb|ABX48804.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS195]
 gi|315266990|gb|ADT93843.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS678]
          Length = 621

 Score = 72.4 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/271 (11%), Positives = 63/271 (23%), Gaps = 9/271 (3%)

Query: 49  EVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV--NYFF 106
           + I    +  +    +         +     L+          K        T    Y  
Sbjct: 139 QAILR-QLGYQPQAFRDMMRVDMTRRQLTAALVGTEFVLAGEAKQLAELQGQTRDVRYLV 197

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
           V  A     +        +        F     +   + ++   DF       + E  A 
Sbjct: 198 VDSAPFLATAVVTDEQVKNYYDANQGQFMSPEMVSLEYVELNAADFAKNNPVSDEEAQAY 257

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
            ++ K   V           +     +     +    D  +         +  +  +   
Sbjct: 258 YEEHKAQYVSNEKRLAAHILVMPGSDEAAAKAKAE--DLAKQLDSGADFADLAKANSDDT 315

Query: 227 -HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEI 282
                 GK  +     + P F   L   ++   +    T  G   I + D +        
Sbjct: 316 LSAEQGGKLDWFEPGVMDPAFDAALFALNKGQHSAVVKTDFGFHIIKLLDVQPGVTVPFA 375

Query: 283 ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            +KA + AQ    K          KL   + 
Sbjct: 376 DVKAKIVAQLQDKKAVDQFYSLQSKLADTSY 406



 Score = 67.4 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/238 (7%), Positives = 66/238 (27%), Gaps = 19/238 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+       I       V++ F    + SY   + +      +NG++IT  ++ +  
Sbjct: 1   MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYLG-STTDVPAAEVNGDIITKAELEQAY 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     +++  ++ L+ + L  Q  +  G+      +  
Sbjct: 60  QSERSRMEQQLGEMFAALSADEKYLQSIKQSVLERLVADKLIDQAAKAMGLRVSDEQIIA 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
                         D   +           + +     +  D+ +          E  + 
Sbjct: 120 AVKTEPAFQTDGKFDNDRYQAILRQLGYQPQAF--RDMMRVDMTRRQLTAALVGTEFVLA 177

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
              +++  +  +   +R ++              ++     + ++ +         ++
Sbjct: 178 GEAKQLAELQGQTRDVRYLVVDSAPFLATAVVTDEQVKNYYDANQGQFMSPEMVSLEY 235



 Score = 37.7 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 39/131 (29%), Gaps = 4/131 (3%)

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
               N     K+ +  E +R +  +   +++  A  +  V+  K     +          
Sbjct: 487 EVKANIAERLKQDQANEAARAKAQELMAQVKAGAMDLGLVAKAKLGRGAQDVDAAIVGKA 546

Query: 250 LKKSQNNTTNPYVT---QKGVEYIAICDKRDLG-GEIALKAYLSAQNTPTKIEKHEAEYV 305
            +    +T+    T     G   +A+            L   L  +      E      +
Sbjct: 547 FQMPTPSTSPVVDTVGLANGYAVVALDKVNAAEGVSDELVNALKQRLNAQYSEADYRGLI 606

Query: 306 KKLRSNAIIHY 316
             L++NA + Y
Sbjct: 607 DSLKANAKVLY 617


>gi|299069905|emb|CBJ41188.1| putative isomerase [Ralstonia solanacearum CMR15]
          Length = 270

 Score = 72.4 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/307 (10%), Positives = 79/307 (25%), Gaps = 54/307 (17%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           V +       +  ++  +   +   +NG  IT   +   IA    Q    ++ +   Q+L
Sbjct: 2   VALALAAFTTLPAQADTLPPGVIAIVNGTRITQEQLDHAIAQSGAQANP-QVAQALKQQL 60

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I   L +Q+  K+        V                                      
Sbjct: 61  IARELFRQQAAKNPAYDKLPAVKQAMQ-----------------------------EAHD 91

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
             I    +K++        E         + ++  +EY  R +         Q    +++
Sbjct: 92  AVITQAWLKDNIKPAPITEEQVKARYDAIVASLGDKEYKARVIQLGDDVTAAQVLAQLKQ 151

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL---------LESDLHPQFQNLLK 251
                              +++++  + V  G   ++            +L       + 
Sbjct: 152 -----------GGDFAKLAQQYSTAPNKVRGGDMDWVSFKVPVEEGKTQNLPLPLAREIA 200

Query: 252 KSQNNT--TNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
                   T P         + +   R   + G   ++  +       ++E+     V  
Sbjct: 201 TLAVGAASTAPVEAGSQRYIVKVEAARPTQVPGYETVRPAIRQALETAELERVTVRVVGD 260

Query: 308 LRSNAII 314
           L   A +
Sbjct: 261 LLKQAKV 267


>gi|170692414|ref|ZP_02883577.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           graminis C4D1M]
 gi|170142844|gb|EDT11009.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           graminis C4D1M]
          Length = 646

 Score = 72.4 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/263 (9%), Positives = 68/263 (25%), Gaps = 17/263 (6%)

Query: 52  TDGDISKRIAL-LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           T     +R+   +  Q++   ++  A      +TL +   E +    +   + +    +A
Sbjct: 149 TPDQYDERVRYSIATQQLPAAIQGSAFTS---KTLAQHLTELAEQQREVQGIAFHPRDYA 205

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                +     ++ D                 +                + E+       
Sbjct: 206 AKVQPTDAQLQAYYDAHRNDFATPATATIQYLVMSP---ATVAASVQPADAELKKYYDDN 262

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH--- 227
                 E  +R     I   K  +     K  + A+E   ++    ++  + A +     
Sbjct: 263 IAHYRTEGQVRASHILIAAPKDASAADKAKAKQKADELLAQIKAHPDQFAQIAQQNSQDP 322

Query: 228 --DVSIGKAQYLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL--GG 280
                 G   Y     +         +    ++  +    T  G   + + D +      
Sbjct: 323 GSAAKGGDLGYFGRGMIAGGKAFDDAVFALKKDEVSGIVQTDFGYHIVKVTDVKPAATKP 382

Query: 281 EIALKAYLSAQNTPTKIEKHEAE 303
              +K  ++         K  ++
Sbjct: 383 FDEVKDQIARDLKTQLASKAFSD 405



 Score = 54.7 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/228 (8%), Positives = 56/228 (24%), Gaps = 15/228 (6%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN 69
              +  +    ++     V I  ++ +   S    ++NG  IT  +    +     +   
Sbjct: 9   KRLMMFMLILVIVPGLGFVGIQGFRGFFDESANVASVNGHKITRAEYDNAMRQQLDRARQ 68

Query: 70  -------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQHARNTG 114
                         E     +  LI + +   E ++  +T   + V           +  
Sbjct: 69  MLGAQFDIKAFDTPERRSQMLDGLIEQRVLADETQRLHLTASDDAVRRVLLNDPVISSLK 128

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
                      KQ +           + +   +                    Q +  + 
Sbjct: 129 NPDGSIDVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPAAIQGSAFTSKTLAQHLTELA 188

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            ++  ++ + F   D   + Q    +     +  R           ++
Sbjct: 189 EQQREVQGIAFHPRDYAAKVQPTDAQLQAYYDAHRNDFATPATATIQY 236


>gi|52144275|ref|YP_082553.1| peptidylprolyl isomerase [Bacillus cereus E33L]
 gi|51977744|gb|AAU19294.1| protein export protein [Bacillus cereus E33L]
          Length = 287

 Score = 72.4 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/305 (10%), Positives = 88/305 (28%), Gaps = 46/305 (15%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S +I T+  G+ IT  +  +++          +  K 
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKIVTSKAGD-ITKDEFYEQMKT--------QAGKQ 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +++E +  +  +      D                   + F + L +QGI +   K
Sbjct: 52  VLNNMVMEKVLIKNYKVEDKEVDKKYD--------EMKKQYGDQFDTLLKQQGIKEGTLK 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +  Q      ++     K      +       +                         
Sbjct: 104 TGVRAQLAQEKAIEKTITDKELKENYKPEIKASHILVKD--------------------- 142

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              +   K  +E   +        ++++         G   +     +  +F++   K  
Sbjct: 143 ---EATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGKMVKEFEDAAYKLK 199

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
           ++  + P  +Q G   I + + ++        K  +  +    K +  +   E + K   
Sbjct: 200 KDEVSEPVKSQFGYHIIKVTEIKEPEKSFEQSKVDIKKEIVQKKAQDAEFMNELMMKEIK 259

Query: 311 NAIIH 315
            A + 
Sbjct: 260 KADVK 264


>gi|24373364|ref|NP_717407.1| peptidyl-prolyl cis-trans isomerase D [Shewanella oneidensis MR-1]
 gi|24347627|gb|AAN54851.1|AE015624_4 peptidyl-prolyl cis-trans isomerase D [Shewanella oneidensis MR-1]
          Length = 621

 Score = 72.4 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/271 (11%), Positives = 61/271 (22%), Gaps = 9/271 (3%)

Query: 49  EVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV--NYFF 106
           + I    +  +    +         +     L+          K        T    Y  
Sbjct: 139 QAILR-QLGYQPQTFRSMMRVDMTRRQLTAALVGTEFVLPGEAKQLAELQGQTRDIRYLV 197

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
           V  A     ++                F     +   + ++   DF       + E    
Sbjct: 198 VDSAPFLAKASVTDEQVKSYYDANQGQFMSPEKVSLEYVELNAADFAKDSKVTDEEAQTY 257

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
             + K   V           I      ++   + + +D  +            +  +   
Sbjct: 258 YDEHKAQYVSNEKRLAAHILIA--LGSDEAAAKAKAEDLAKQLDNGADFAALAKANSEDT 315

Query: 227 -HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG--GEI 282
                 GK  +     + P F   L    +   +    T  G   I + D +        
Sbjct: 316 LSAEQGGKLDWFEPGVMDPTFDTALFALQKGQHSGVVKTDFGFHIIKLLDIQPGTTVPFA 375

Query: 283 ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            +K  + AQ    K          KL   + 
Sbjct: 376 DVKTKIFAQLQEKKAVDQFYSLQSKLADTSY 406



 Score = 65.9 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/174 (10%), Positives = 48/174 (27%), Gaps = 20/174 (11%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+       I       V++ F    + SY            +NG+ IT  ++ +  
Sbjct: 1   MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYLGSTSEVP-AAEVNGDKITKAELEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     +++  ++ L+ + L  Q     G+      +  
Sbjct: 60  QSERARMEQQLGEMFAALSADERYLESIKQSVLERLVADKLIDQAAAAMGLRVSDEQIIE 119

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
                     +     E + + L + G     F+  + +      +       +
Sbjct: 120 AIKSEPAFQTDGKFDNERYQAILRQLGYQPQTFRSMMRVDMTRRQLTAALVGTE 173



 Score = 36.2 bits (81), Expect = 6.0,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 38/131 (29%), Gaps = 4/131 (3%)

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
               +     K+ +  E +R +  +   +++  A+ +   +  K     +          
Sbjct: 487 EVKADIAERLKQEQANEAARAKAEELMAQVKAGAADVSLTAKTKLGRGAQDVDAAIVGKA 546

Query: 250 LKKSQNNTTNPYVT---QKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYV 305
            +    +      T     G   +A+            L   L  +      E      +
Sbjct: 547 FQMPTPSAAPVVGTVGLANGYAVVALDKVNAADSVSDELVNALKQRLNAQYSEADYRGLI 606

Query: 306 KKLRSNAIIHY 316
           + L++NA + Y
Sbjct: 607 ESLKANAKVLY 617


>gi|71901123|ref|ZP_00683230.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           Ann-1]
 gi|71729128|gb|EAO31252.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
           Ann-1]
          Length = 655

 Score = 72.4 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 47/152 (30%), Gaps = 4/152 (2%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
              + Q+       +     +L ++  +    +    K  K  EE+R             
Sbjct: 273 KRYDAQQRGEAQNEQRKAAHILITVGADAASQKVAEAKAAKLVEEARKPGADFAALARIN 332

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLG- 279
           +       + G   ++    +   F++            P  T+ G   I + + +    
Sbjct: 333 SQDPGSKDAGGDLGWVQRGMMVKPFEDALFAMKVGEVVGPIKTEFGNHVIKLEEIKAAKQ 392

Query: 280 -GEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
               A++  L+A+ T   I+K   +   KL  
Sbjct: 393 LPFEAVRDQLAAEQTKEDIDKAFNDVTGKLMD 424


>gi|82703453|ref|YP_413019.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira
           multiformis ATCC 25196]
 gi|82411518|gb|ABB75627.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira
           multiformis ATCC 25196]
          Length = 626

 Score = 72.4 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/252 (10%), Positives = 69/252 (27%), Gaps = 9/252 (3%)

Query: 59  RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
           R  L++ Q ++   +   +   + E + +   EK  +         F             
Sbjct: 152 RQDLMRQQLVDPFSKNAFISHSVAERILRLGDEKREVRVVQIQPEQFLANVKPGNDAIRA 211

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
            + +   +         +   ++ +   +       +    E      + K +     E 
Sbjct: 212 YYEAHKAEF-----QVPEQARVEYVVLSMDALAEKAQVTADEALAYYEEHKHEFGQPEER 266

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYL 237
               +L S P +         K  +   E R    +     ++ +       + G   + 
Sbjct: 267 RASHILISAPASASDRATARAKAEELLAEVRKSPQRFTELAKQHSQDPGSAPTGGDLGFF 326

Query: 238 LESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTP 294
             + +   F++   +      ++   T+ G   I + + R         +K  +  +   
Sbjct: 327 ARNMMTKSFEDAVFRMKPGEISDIVETEHGFHIILLAEARGGKQASLEEVKKQVEQEVRK 386

Query: 295 TKIEKHEAEYVK 306
            K  K   E   
Sbjct: 387 QKAAKTFGEMAD 398


>gi|206603474|gb|EDZ39954.1| Putative peptidyl-prolyl cis-trans isomerase [Leptospirillum sp.
           Group II '5-way CG']
          Length = 324

 Score = 72.4 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/306 (9%), Positives = 83/306 (27%), Gaps = 38/306 (12%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL--------- 63
           +K    +  L +  +     ++S    + +   +  + IT  ++      +         
Sbjct: 16  LKTFIRFLFLSVLILFSNGCHRSEDRKTLVVGYLGKKAITVKNLEDTARFMGLGPVSRHR 75

Query: 64  KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
            L +         ++E + +   ++E +K GI    N +  +   H      S E F+  
Sbjct: 76  PLTEWTLSERNAVLRETVQDIFLEEEGKKRGIIIRPNEIMDYLNNHFLQPDKSLETFARK 135

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                                        +               +      R+ ++  +
Sbjct: 136 ALFLQKTAKALAP----------------LPDISVSTERSFYKNHQNLFRVSRQAIVDHI 179

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
           +              Q+  +   ++ L+        +  +  +   S G+ +   +  + 
Sbjct: 180 V-----------VAKQEEAESIRDALLKGSSFGKLAKLESLGMEASSGGRMKPYPQGTMP 228

Query: 244 PQFQNLLKKSQNNTTNPYVTQKGVEYIAICD--KRDLGGEIALKAYLSAQNTPTKIEKHE 301
           P F  +        +    +  G     +     +        K ++  + T  K +K  
Sbjct: 229 PPFDTVFTMKPGEISPVLSSSYGYHLFRLEKFIPKHTLPFSMEKNWIKKKLTREKRQKVL 288

Query: 302 AEYVKK 307
             ++ +
Sbjct: 289 QGWLAQ 294


>gi|291277225|ref|YP_003516997.1| major antigenic peptide PEB3\cell binding factor 2 [Helicobacter
           mustelae 12198]
 gi|290964419|emb|CBG40269.1| major antigenic peptide PEB3\cell binding factor 2 [Helicobacter
           mustelae 12198]
          Length = 278

 Score = 72.4 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/295 (13%), Positives = 78/295 (26%), Gaps = 30/295 (10%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVE 83
           I   +      +    ++   +++ ++IT+ D             N    +     LI +
Sbjct: 6   IISAIAASILFTGISYAKDLASVDDQIITEKDFDVLKQQAPDFDFNKLTTEQ-KNGLINQ 64

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            + +  IEK+      +    +                                      
Sbjct: 65  KVNEILIEKAAKKEKLDQTREYQEALENIKKQLLLQ-----------------------A 101

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
           W   V                      K    +E   R +L    +   +    + K  K
Sbjct: 102 WQHNVAEQAKKTVIPEAEVKKFYDDNPKQFIQQEGHARHILVKTKEEAEKIIAELNKAPK 161

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT--NPY 261
              E   +  +  NK     +     + G       + + P+F + +     NT    P 
Sbjct: 162 SRVEQ--KFIELANKYTTDPNAKKAQNGGDLGTFQRNQMVPEFGDAVFALSPNTYTKTPV 219

Query: 262 VTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            TQ G   + +  K           K  +       K ++   + ++ LRSNA I
Sbjct: 220 KTQYGYHVVYLIKKGSPKTISFAEAKPTIENMFKERKFQEMAQDKIQHLRSNAKI 274


>gi|21230443|ref|NP_636360.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|21112006|gb|AAM40284.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 656

 Score = 72.4 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 17/148 (11%), Positives = 48/148 (32%), Gaps = 4/148 (2%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
               ++K + +   + L   +L S   +    +   +K  K A E++          +  
Sbjct: 274 KRYEEEKARFVEPDQRLASHILISAGSDAAAQKAAEEKAAKLAAEAKQPGADFAALAKAN 333

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           +       + G   ++ +  +   F++        +   P  T+ G   I + + +   G
Sbjct: 334 SQDPGSKDAGGDLSWVEKGTMVKPFEDALFAMKAGDVVGPIKTEFGYHVIQLREVKGGQG 393

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKKL 308
           +      +  Q    +++    +    L
Sbjct: 394 KS--FEQVRDQLAAEQLKADADKAFADL 419



 Score = 50.1 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 56/236 (23%), Gaps = 34/236 (14%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTI-------------- 46
           M  K+    S +I       ++I F  V   SY     ++     +              
Sbjct: 1   MLQKLRDKTSGWIATAILGLLMIPFLFVIDNSYLGGIGANN-VAKVQAPPTWWKSAPSWW 59

Query: 47  ------NGEVITDGDISKRIALLKLQKINGELEK-------------IAVQELIVETLKK 87
                     I+  D   R    ++Q+   + E                + +L+ E + +
Sbjct: 60  PVSLLWQHHEISTQDFRARFEQSRMQERQRQGENFDPRQFESRENKLQVLDQLVDEQVVR 119

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
              E +GI     TV  +                 +      G            +   +
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQIDGKFSPDQYRAALAQGTPPRTPAQFDALVRDSL 179

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
            ++              +  +++  +      +   +   P          Q +  
Sbjct: 180 QQSVIPQAVAESGFATKSEFERLLTLMGETRDVELAMLPEPTADTAPVSDAQIKQW 235


>gi|239618053|ref|YP_002941375.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kosmotoga olearia
           TBF 19.5.1]
 gi|239506884|gb|ACR80371.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kosmotoga olearia
           TBF 19.5.1]
          Length = 616

 Score = 72.4 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/331 (11%), Positives = 92/331 (27%), Gaps = 44/331 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRT--TINGEVIT------------DGDISKRIA 61
           +  + ++++  ++ ++ +      + I    T++G  IT            +  +   +A
Sbjct: 1   MKKFLIILVVFVLGVLGFT-----NSIIAELTVDGT-ITGVHAFQVGYDEYESALQGALA 54

Query: 62  LLKLQKI-------------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
             + Q                 +L    ++ L+   +      +  +  D          
Sbjct: 55  NYESQGQSIDKYFGKESLPSEIQLGYSVLKVLLDRKVMAFFAMEQDVFPD-EAQVQQITD 113

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
              +  +S E   + L+       +F++ +        + +N F     + +       +
Sbjct: 114 ELVSRYISDETTRAQLEMYYGSIENFRKVVEDIVFVRTLSQNVFNAIVPDYDASATEYFE 173

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIH 227
           K K     EY        +   +       +K         L         ++++  +  
Sbjct: 174 KNKTDIKNEYESVNAAHILVSTEASAMELKEKI-------LLGELSFEEAAKRYSLDQYS 226

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA 286
               G    L    +  +F+      +      P  T  G   I +  K        LK 
Sbjct: 227 AQQGGNIGELKHGTVILEFEEAAFAATPGEIVGPVKTDYGYHLIKVNSKTTFDSYEDLKN 286

Query: 287 -YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                        +    ++ K R +  IHY
Sbjct: 287 SKAYEDIMSRFENEAFLGWITKYRQDKKIHY 317


>gi|87121304|ref|ZP_01077194.1| peptidyl-prolyl cis-trans isomerase D, putative [Marinomonas sp.
           MED121]
 gi|86163461|gb|EAQ64736.1| peptidyl-prolyl cis-trans isomerase D, putative [Marinomonas sp.
           MED121]
          Length = 611

 Score = 72.4 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 79/265 (29%), Gaps = 16/265 (6%)

Query: 56  ISKRIALLKLQKING---ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
             +RI    L +         +  +   + + LK Q  ++S      +  +   +    +
Sbjct: 150 FKQRIKQDILLQQGRIALSSSEFVLSNQVDQVLKLQNQQRSYDYIRYSLADEVALTQVSD 209

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
           T + A    +    Q          +            DF  K      E+     +   
Sbjct: 210 TEIQAYFDENTQSFQNPEQVKLDYVIISSV--------DFHDKVNVSSAELEQ-AYQAAT 260

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSI 231
            T  +   R     I  N  ++    +   +D +       K     ++++  +    + 
Sbjct: 261 STAPKEERRASHILIEANDQRSDEEARALAQDIKSKIDSGTKFEALAKQYSDDLGSKAAG 320

Query: 232 GKAQYLLESDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYL 288
           G   Y+    + P+F+N+L     +  +    T+ G   I + +    D      ++  L
Sbjct: 321 GDLGYVSSGMMVPEFENVLFSMVVDQVSGVVETEFGYHLIELREITNVDTPSLAEMEPEL 380

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNAI 313
           + +    K +       + +   A 
Sbjct: 381 TQEILDRKAQDALLSAQEDITDLAY 405



 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/327 (11%), Positives = 100/327 (30%), Gaps = 24/327 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +   F+++ F +  + +  +   +S     ++G  IT  ++ +  
Sbjct: 1   MLQDIRDKSQGIVVKIIIGFIVVTFALFGVDALVTGFTTSDTVAEVDGVEITRTELLQSA 60

Query: 61  ALLKLQ-------------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
            + + Q               +  L++ A+ ELI   +         +      V+ + +
Sbjct: 61  EIQRRQLISMMGGQIDPALLEDTLLQRRALDELIQRAVLTNNANDLNLAVSDAQVDQYLI 120

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
           Q  +       D + +L+           +         + +    L        + +N+
Sbjct: 121 QAEQFQTDGQFDQTKYLNFIRTLGYTPLAFKQRIKQDILLQQGRIALS---SSEFVLSNQ 177

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
                    +      +     +++         I+   +   +  ++  +++     I 
Sbjct: 178 VDQVLKLQNQQRSYDYIRYSLADEVALTQVSDTEIQAYFDENTQSFQNPEQVKLDYVIIS 237

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY-IAICDKRDLGGEIALKA 286
            V       +  ++L   +Q          T P   ++     I   D+R      AL  
Sbjct: 238 SVDFHDKVNVSSAELEQAYQAATS------TAPKEERRASHILIEANDQRSDEEARALAQ 291

Query: 287 YLSAQN-TPTKIEKHEAEYVKKLRSNA 312
            + ++  + TK E    +Y   L S A
Sbjct: 292 DIKSKIDSGTKFEALAKQYSDDLGSKA 318


>gi|58038776|ref|YP_190740.1| peptidyl-prolyl cis-trans isomerase [Gluconobacter oxydans 621H]
 gi|58001190|gb|AAW60084.1| Peptidyl-prolyl cis-trans isomerase [Gluconobacter oxydans 621H]
          Length = 387

 Score = 72.4 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 65/211 (30%), Gaps = 2/211 (0%)

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
             +    + +LI E LK QEI K  I  + + +        +  G+        L   G+
Sbjct: 22  NRMRGQIIHQLIDERLKTQEILKLHINVEPDQIAGAISNIEQRNGMPKNALRDRLASDGV 81

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                   + +Q  W  V++     +      +I   +Q ++    R     + +F    
Sbjct: 82  SLTTLIDQIRVQIGWMQVLREKLGEEGRVTATQISQREQALQAEQGRPQYFMSEIFVPVA 141

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL-HPQFQN 248
           +   ++  +                      +F+     +  G   ++ E +L       
Sbjct: 142 DPRHDENELAFTKTI-ISQLREGAPFPIVAAQFSQAQSALDGGSMGWVQEDNLDPQVVNI 200

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
           + +      +NP     G     +  KR +G
Sbjct: 201 VRQMPIGAISNPIQVAGGFVIATVQSKRVVG 231



 Score = 52.8 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 30/74 (40%)

Query: 242 LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE 301
           +      L     N  + P V+  G+  + +C+++         + ++ Q    ++E+  
Sbjct: 304 MPQMKAVLEALPPNKVSRPLVSMDGIALLMVCNRQQKNLAQQSPSEIADQLMNERVEQAS 363

Query: 302 AEYVKKLRSNAIIH 315
            +  + L+  AII 
Sbjct: 364 RQLQRDLQRRAIIE 377


>gi|296123565|ref|YP_003631343.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces
           limnophilus DSM 3776]
 gi|296015905|gb|ADG69144.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces
           limnophilus DSM 3776]
          Length = 415

 Score = 72.4 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 30/301 (9%), Positives = 84/301 (27%), Gaps = 30/301 (9%)

Query: 41  RIRTTINGEVITDGDISKRI----------------ALLKLQKINGELEKIAVQELIVET 84
           ++   +NG  I   ++ +R                  LL+   I   L     ++LIVE 
Sbjct: 100 QVVARVNGAPIFASEVLERYGEVLAQAREKLPPDKFNLLRENIIAQNLRAHVERQLIVER 159

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
           ++           D      F  +  +            L+ +        + +      
Sbjct: 160 MRADMKPDQLKQLDGYLDAAFEKEMVKLKEQLKVQTKPELEYELNKRGTCLEDVRQSFQN 219

Query: 145 PDVVKNDFMLK------YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
             +      +K          ++         +         + +  S       +Q   
Sbjct: 220 NRIAMEYLAVKAGKPEPINRKDLVEYYESHPEEFRLESRVKWKQIQCSF---LKSDQEQA 276

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH--PQFQNLLKKSQNN 256
           + ++K A E         +   K++  +     G   +  +  L      + L       
Sbjct: 277 RVKMKSALEELANGESFEDVARKYSDGVTAKEGGHWDWTQKGSLSDKKLEEILFTAKVGE 336

Query: 257 TTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            ++  +  +  + + + ++   G      ++  +  +  PT+        +  + ++A+I
Sbjct: 337 LSDVTIIGRAYQVVFVEERESAGMRPFAEVQQEIHKKIEPTRFPNPRKI-LDAMLASAVI 395

Query: 315 H 315
            
Sbjct: 396 E 396


>gi|305431687|ref|ZP_07400856.1| peptidyl-prolyl cis-trans isomerase [Campylobacter coli JV20]
 gi|304445282|gb|EFM37926.1| peptidyl-prolyl cis-trans isomerase [Campylobacter coli JV20]
          Length = 273

 Score = 72.4 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 96/302 (31%), Gaps = 41/302 (13%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI----NGELEKIAVQ 78
           +      +++  +  +++    T+NG+ I+D ++S+  A +   +         +K  +Q
Sbjct: 4   VSLIAAALIAGVTLNLNAATIATVNGKNISDTEVSEFFAPMLRGEDFKSLPDHQKKALLQ 63

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
           + I++ L  Q+ +K  +  D                                        
Sbjct: 64  QYIMQDLILQDAKKQNLEKDPLYKKEL-------------------------------ER 92

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
           A  SI  +V +   +        ++ A  ++ K   ++   ++     +   +       
Sbjct: 93  AKDSILVNVYQEKILNSIKVDSSKVKAFYEQNKEKYIKPAAVQAKHILVSSEQEAKDIIK 152

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN-- 256
           + +    +       +   +  K          G+  +  +S +   F +     +N   
Sbjct: 153 ELKGLKGKALDDNFSQLAQE--KSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTI 210

Query: 257 TTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           TT P  T  G   I   + R  +      +K  +       + +K   +  + L +NA +
Sbjct: 211 TTTPVKTNFGYHVILKENSRAKEQIKFDDVKKGIENGLKFEEFKKVINQKGQDLLNNAKV 270

Query: 315 HY 316
            Y
Sbjct: 271 EY 272


>gi|221215062|ref|ZP_03588029.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans CGD1]
 gi|221164998|gb|EED97477.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans CGD1]
          Length = 644

 Score = 72.4 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 22/273 (8%), Positives = 60/273 (21%), Gaps = 22/273 (8%)

Query: 53  DGDISKRIALLKLQ-KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
             D+ +   L+  Q     + ++     L ++ +    +  +                 R
Sbjct: 133 SIDVERYAQLMSFQGMTPEQYQERVRYSLALQQIPASIVSSAFTPKSLAQRLSELAAQQR 192

Query: 112 NTGLSAEDFSSFLDKQGIGDNH---FKQYLAIQSIWPDVVKNDF--------MLKYGNLE 160
                      +  K    D     +      Q   P+    ++               +
Sbjct: 193 EVQALVLKTGDYASKVQPTDAQLAAYYDAHKQQFATPETATIEYLVYSPAAAAASAQPTD 252

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            +I             E  +R     I      +          AE+    +    ++  
Sbjct: 253 ADIKKFYDDNPTHFRTEAQVRVSHIFIAAASDASAADKAAAKAKAEQLLADVKAHPDQFA 312

Query: 221 KFA-----SKIHDVSIGKAQYLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAI 272
           + A             G   ++                   Q   +    +  G   +  
Sbjct: 313 QIAEKNSQDAPSATKGGDLGFITRGSTAGGKAFDDAAFALKQGEISGVVQSDLGFHILKA 372

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAE 303
            + +   +     +K  ++A        K  ++
Sbjct: 373 TEVKPSIVKPFAEVKDEIAATLKQQYAAKAFSD 405



 Score = 47.0 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/211 (9%), Positives = 54/211 (25%), Gaps = 15/211 (7%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN-------------GELE 73
            V I  ++ +   S     +NG  IT  +          Q                 E  
Sbjct: 26  FVGIQGFRGFFDESANVAAVNGHKITRVEFDGAFRQQIDQARQALGAQFDIKAFDTPEHR 85

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQHARNTGLSAEDFSSFLDKQGIGD 131
           K  +  LI + +   E ++  +T   N V           +              Q +  
Sbjct: 86  KQVLDGLIQQRVLADETQRLHLTASDNAVREALLSDPMIASLKKPDGSIDVERYAQLMSF 145

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                    + +   +          +      +  Q++  +  ++  ++ ++    D  
Sbjct: 146 QGMTPEQYQERVRYSLALQQIPASIVSSAFTPKSLAQRLSELAAQQREVQALVLKTGDYA 205

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            + Q    +     +  + +         ++
Sbjct: 206 SKVQPTDAQLAAYYDAHKQQFATPETATIEY 236


>gi|170743751|ref|YP_001772406.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium sp.
           4-46]
 gi|168198025|gb|ACA19972.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium sp.
           4-46]
          Length = 277

 Score = 72.4 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 61/241 (25%), Gaps = 6/241 (2%)

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I      +E++               +       L  E     +  Q   D   ++    
Sbjct: 24  ISRAAISREVQNHPAPTPVAAWRAAALALVLREALGQEARRLGIAAQPARDAEGRRETEE 83

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           ++    +V+ +  +     E      ++        +    + +             + +
Sbjct: 84  EARMRALVEREVAVPAPTEEECRRYYERNPARFRTPDLFEASHILFAAARDDAAAYELAR 143

Query: 201 RIKDAE--ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNT 257
                                   ++       G    +      P F+           
Sbjct: 144 LNAQMIIAMLEEDPDTFEELARLHSACPSGEVGGSLGQVTTGQTTPDFEAALRGMRPGEI 203

Query: 258 T-NPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           +  P  T+ GV  I +  + D G     A    ++A  +     + +A+YV +L   A I
Sbjct: 204 SRAPVETRYGVHVIRLGRRLDGGTLPFEAASPRIAAYLSEALRRRAQAQYVARLLGQARI 263

Query: 315 H 315
            
Sbjct: 264 E 264


>gi|225027756|ref|ZP_03716948.1| hypothetical protein EUBHAL_02015 [Eubacterium hallii DSM 3353]
 gi|224954902|gb|EEG36111.1| hypothetical protein EUBHAL_02015 [Eubacterium hallii DSM 3353]
          Length = 248

 Score = 72.4 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/282 (9%), Positives = 73/282 (25%), Gaps = 38/282 (13%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
           MS +I     G  IT+ + ++ ++ L  Q+                              
Sbjct: 1   MSEKIIAVSAGREITETEFNEFLSKLPEQQQ-------------------------AYVA 35

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                     Q+A         +    D+        +           + +    ++  
Sbjct: 36  TEEGRKQALTQYANYFLFEKLGYDKKYDQDEAFLATMEAVKRELLGQYALTQEIKDIQAT 95

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E E   N+ K   +   +   + +L +  +   +    ++            +    +
Sbjct: 96  QEECEAYYNEHKAMFVKEAKATAKHILTATEEESKKVLEEIE----------SGVKTFED 145

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
             +++++       G         +  +F + +          P  T  G   I + +  
Sbjct: 146 AAKEYSTCPSKAQGGSLGTFGRGQMVKEFDEAVFTAEVGKVIGPVKTDFGYHLIRVDELT 205

Query: 277 --DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             +      +   +  Q T  K  K      +++     + +
Sbjct: 206 GGEQSEFAEVYPQIMQQLTTEKQNKKYMAVRQEMIEKYGLEF 247


>gi|315927333|gb|EFV06677.1| PPIC-type PPIASE domain protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 263

 Score = 72.4 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 34/292 (11%), Positives = 91/292 (31%), Gaps = 35/292 (11%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
           +++     +++    T+NG+ I+D ++S+  A +   +    L     + LI + + +  
Sbjct: 1   MIAGVVLNVNAATVATVNGKSISDTEVSEFFAPMLRGQDFKTLPDNQKKALIQQYIMQDL 60

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
           I +     +                                    +   A  +I  +V +
Sbjct: 61  ILQDAKKQNLEKDP---------------------------LYTKELDRAKDAILVNVYQ 93

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
              +        ++ A   + K+  V+   ++     +   K       + +    +E  
Sbjct: 94  EKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGKELD 153

Query: 210 LRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNN--TTNPYVTQKG 266
            +        ++ +         G+  +  +S +   F +     +N   TT P  T  G
Sbjct: 154 AKFS---ELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTNFG 210

Query: 267 VEYIAICD--KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
              I   +   +       +K  +       + +K   +  + L ++A + Y
Sbjct: 211 YHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDLLNSAKVEY 262


>gi|307352353|ref|YP_003893404.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methanoplanus
           petrolearius DSM 11571]
 gi|307155586|gb|ADN34966.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methanoplanus
           petrolearius DSM 11571]
          Length = 93

 Score = 72.4 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 1/79 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNT 257
           +K  KD               +K+++       G   +  +  +  +F++        + 
Sbjct: 15  EKEAKDILAKLNSGENFEELAKKYSTCPSGRKGGDLGWFGKGMMVKEFEDASFSAKDGDV 74

Query: 258 TNPYVTQKGVEYIAICDKR 276
           T P  TQ G   I I   +
Sbjct: 75  TGPVKTQFGYHIIKITGNK 93


>gi|301169728|emb|CBW29329.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Haemophilus
           influenzae 10810]
          Length = 622

 Score = 72.4 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 47/395 (11%), Positives = 110/395 (27%), Gaps = 84/395 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           +  K+    +  I       + + F +  +  Y  ++ +      +NGEVI+  D   R 
Sbjct: 2   LIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYL-FSSNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  AL---LKLQKINGE-------------LEKIAVQELIV-----------------ETLKK 87
                ++ Q+                 L +  V  +I                  E +K+
Sbjct: 61  NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
             +            N  + +  +   L+++ ++S L      +         + I P  
Sbjct: 121 AIVTDPNFQVKGKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVPAQ 180

Query: 148 VK-------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL---- 184
           VK                    D M K    + EI    +  +   V+   ++       
Sbjct: 181 VKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYIDLS 240

Query: 185 ------------------------FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
                                     +  +    Q   ++  K A E   +     +  +
Sbjct: 241 ADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQFANEQDAKVAYEELQKGANFADVAK 300

Query: 221 KFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL 278
             +  KI   + G   ++ E++L   F++          + P         + + +++  
Sbjct: 301 AKSLDKISGENGGDLGWVNENELPKAFEDAAAALQVGQYSQPINVDGNYHIVLVQERK-A 359

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                +KA ++     + +E       K+    A 
Sbjct: 360 QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAF 394


>gi|307546074|ref|YP_003898553.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halomonas elongata
           DSM 2581]
 gi|307218098|emb|CBV43368.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halomonas elongata
           DSM 2581]
          Length = 213

 Score = 72.4 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 24/197 (12%), Positives = 71/197 (36%), Gaps = 8/197 (4%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGELEKIA 76
              V +++  +     RI   +N   I +  + +R+A  + Q          +  L +  
Sbjct: 17  LAPVGVMAQDARQPLDRIVAVVNEGAIMNSQLEERVARTRAQMEAQGVEVPPDDVLRQQV 76

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           +  L++E ++ Q   ++ ++ D   +N      A+N  ++ E F+  L+  G+     + 
Sbjct: 77  LDRLVIEEIQLQMAREANLSVDDTELNRQVRAIAQNNDMTLEQFADALEADGLSLGVVRD 136

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
            +  + +   + +     +    E E+    ++       E   + +     +++++   
Sbjct: 137 QVRRELLMRQIQQRRVGSRVSISEAEVNRFIEQQGGNVTAEQARQALFQRKANDEMEAWV 196

Query: 197 FVQKRIKDAEESRLRLP 213
              +     +E      
Sbjct: 197 QEIRSQAFVDERLGSGS 213


>gi|260580093|ref|ZP_05847923.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae RdAW]
 gi|260093377|gb|EEW77310.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae RdAW]
          Length = 622

 Score = 72.4 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 47/395 (11%), Positives = 110/395 (27%), Gaps = 84/395 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           +  K+    +  I       + + F +  +  Y  ++ +      +NGEVI+  D   R 
Sbjct: 2   LIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYL-FSSNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  AL---LKLQKINGE-------------LEKIAVQELIV-----------------ETLKK 87
                ++ Q+                 L +  V  +I                  E +K+
Sbjct: 61  NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
             +            N  + +  +   L+++ ++S L      +         + I P  
Sbjct: 121 AIVTDPNFQVKGKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVPAQ 180

Query: 148 VK-------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL---- 184
           VK                    D M K    + EI    +  +   V+   ++       
Sbjct: 181 VKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYIDLS 240

Query: 185 ------------------------FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
                                     +  +    Q   ++  K A E   +     +  +
Sbjct: 241 ADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQFANEQDAKVAYEELQKGANFADVAK 300

Query: 221 KFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL 278
             +  KI   + G   ++ E++L   F++          + P         + + +++  
Sbjct: 301 AKSLDKISGENGGDLGWVNENELPKAFEDAAAALQVGQYSQPINVDGNYHIVLVQERK-A 359

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                +KA ++     + +E       K+    A 
Sbjct: 360 QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAF 394


>gi|315283321|ref|ZP_07871537.1| foldase protein PrsA [Listeria marthii FSL S4-120]
 gi|313613042|gb|EFR86968.1| foldase protein PrsA [Listeria marthii FSL S4-120]
          Length = 292

 Score = 72.0 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/304 (9%), Positives = 86/304 (28%), Gaps = 40/304 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +L +  ++ + S  +      +  T +   +T  ++   +          +    
Sbjct: 1   MKKKLILGLVMVMALFSLAACGGGGNVVKT-DSGDVTKDELYDAMK--------DKYGSE 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            VQ+L  E +   + + S    D            +        +              +
Sbjct: 52  FVQQLTFEKVLSDKYKVSDEDVD------------KKFNEYKSQYGDQFSAVLAQSGLTE 99

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    Q  +  +V+          +  +    +                +          
Sbjct: 100 KSFKSQLKYNMLVQKATEANTDTSDKALKEYYKT---------------WQPDITVSHIL 144

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLK--K 252
              + + K+ E+      K  +  +++++      + GK +      + P F+      K
Sbjct: 145 VADENKAKEVEQKLKDGAKFADLAKEYSTDTATKENGGKLEPFGPGKMDPAFEKAAYALK 204

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA-QNTPTKIEKHEAEYVKKLRSN 311
           ++ + + P  TQ G   I + +          K  +           ++  + +KK+  +
Sbjct: 205 NKGDISAPVKTQYGYHIIQMDEPATKTTFDKDKKAVKESYLQSQLTTENMQKTLKKVYKD 264

Query: 312 AIIH 315
           A + 
Sbjct: 265 ANVK 268


>gi|83646714|ref|YP_435149.1| parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC
           2396]
 gi|83634757|gb|ABC30724.1| Parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC
           2396]
          Length = 255

 Score = 72.0 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 90/278 (32%), Gaps = 46/278 (16%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           +NG  I++  + + +     +     L + A   ++ E L+++                 
Sbjct: 7   VNGVAISETAMFQEMQYFPSESQEDALNQAARALIVSELLRQRAQA-------------- 52

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
                                    +   +     + I   + +   + +    E E   
Sbjct: 53  ------------------------LEMETEGLSQDEVIDLLLQREAPVREPTAEECERFY 88

Query: 166 NKQKMKNITVREYLIRTVL-FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
                +  +        +L  + PD+  +    +++     E  +    +  +  +KF++
Sbjct: 89  RGHPEQFSSSPLVEANHILLAAAPDDVKERSLKLEQAKALIERLQSNPEQFASLAQKFSA 148

Query: 225 KIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIA 283
                  G    L       +F+  + + +     +P  ++ GV  + +  KR++ GE+A
Sbjct: 149 CPSKDQGGSLGQLSRGQTVAEFEAAVFRHEYGLIPSPVESRYGVHVVWV--KRNIPGELA 206

Query: 284 LKAYLSAQNTPTKIE----KHEAEYVKKLRSNAIIHYY 317
             +Y+  +      E    +   +Y+ +L   A IH Y
Sbjct: 207 PYSYVEEKLRSYLKELAERRAIVDYLHRLVEAAEIHGY 244


>gi|161524527|ref|YP_001579539.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans ATCC 17616]
 gi|189350717|ref|YP_001946345.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia multivorans
           ATCC 17616]
 gi|160341956|gb|ABX15042.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans ATCC 17616]
 gi|189334739|dbj|BAG43809.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia multivorans
           ATCC 17616]
          Length = 644

 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/273 (8%), Positives = 61/273 (22%), Gaps = 22/273 (8%)

Query: 53  DGDISKRIALLKLQ-KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
             D+ +   L+  Q     + ++     L ++ +    +  +                 R
Sbjct: 133 SIDVERYAQLMSFQGMTPEQYQERVRYSLALQQIPASIVSSAFTPKSLAQRLSELAAQQR 192

Query: 112 NTGLSAEDFSSFLDKQGIGDNH---FKQYLAIQSIWPDVVKNDF--------MLKYGNLE 160
                    S +  K    D     +      Q   P+    ++               +
Sbjct: 193 EVQALVLKTSDYASKVQPTDAQLAAYYDAHKQQFATPETATIEYLVYSPAAAAASAQPTD 252

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            +I             E  +R     I      +          AE+    +    ++  
Sbjct: 253 ADIKKFYDDNPTHFRTEAQVRVSHIFIAAASDASAADKAAAKAKAEQLLADVKAHPDQFA 312

Query: 221 KFA-----SKIHDVSIGKAQYLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAI 272
           + A             G   ++                   Q   +    +  G   +  
Sbjct: 313 QIAEKNSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFALKQGEISGVVQSDLGFHILKA 372

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAE 303
            + +   +     +K  ++A        K  ++
Sbjct: 373 TEVKPSIVKPFAEVKDEIAATLKQQYAAKAFSD 405



 Score = 47.0 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/211 (9%), Positives = 54/211 (25%), Gaps = 15/211 (7%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN-------------GELE 73
            V I  ++ +   S     +NG  IT  +          Q                 E  
Sbjct: 26  FVGIQGFRGFFDESANVAAVNGHKITRVEFDGAFRQQIDQARQALGAQFDIKAFDTPEHR 85

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQHARNTGLSAEDFSSFLDKQGIGD 131
           K  +  LI + +   E ++  +T   N V           +              Q +  
Sbjct: 86  KQVLDGLIQQRVLADETQRLHLTASDNAVREALLSDPMIASLKKPDGSIDVERYAQLMSF 145

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                    + +   +          +      +  Q++  +  ++  ++ ++    D  
Sbjct: 146 QGMTPEQYQERVRYSLALQQIPASIVSSAFTPKSLAQRLSELAAQQREVQALVLKTSDYA 205

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            + Q    +     +  + +         ++
Sbjct: 206 SKVQPTDAQLAAYYDAHKQQFATPETATIEY 236


>gi|313632264|gb|EFR99323.1| foldase protein PrsA [Listeria seeligeri FSL N1-067]
          Length = 295

 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/304 (10%), Positives = 89/304 (29%), Gaps = 40/304 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +L +  ++ + S  +    S +  T  G+ +T  ++ + +          +    
Sbjct: 1   MKKKMILGLVMLMAMFSLAACGGGSDVVKTDAGD-VTQDELYEAMK--------DKYGNE 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            VQ+L  E +   + + +    DS                    +    D         +
Sbjct: 52  FVQQLTFEKILGDKYKVTDEQVDSE------------FKKYKSQYGDQFDAVLAQSGLTE 99

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    Q  +  +V+          +  +    +                +          
Sbjct: 100 ETFKSQLKYNMLVQKATEANTDTSDKALKEYYKT---------------WQPDITVSHIL 144

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLK--K 252
              + + K+ E+      K  +  +++++      + GK        + P F+      K
Sbjct: 145 VADEAKAKEVEQKLKDGEKFADLAKEYSTDTATKDNGGKLAPFGPGKMDPAFEKAAYALK 204

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA-QNTPTKIEKHEAEYVKKLRSN 311
           ++ + ++P  TQ G   I + +          K  +           ++  + +KK   +
Sbjct: 205 NKGDISDPVKTQYGYHIIQMDEPATKTTFDKDKKAVKESYLQSQLTTENMQKTLKKEYKD 264

Query: 312 AIIH 315
           A + 
Sbjct: 265 ANVK 268


>gi|301168101|emb|CBW27687.1| putative peptidyl-prolyl cis-trans isomerase [Bacteriovorax marinus
           SJ]
          Length = 495

 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/362 (12%), Positives = 96/362 (26%), Gaps = 64/362 (17%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA------------ 61
            +  T F+ +I        Y+S   S      +  E I   +  +               
Sbjct: 13  NIFVTIFIGLIVISFMFTGYQSLTTSPNSVAKVGDEFIKVEEYQREYNRQLEFFRNILGG 72

Query: 62  --LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF---VQHARNTGLS 116
             L   Q     +++ A+  L+   L     +K G+   S  +            N   S
Sbjct: 73  KDLTTQQIQQFRIKETALSNLVQLKLTLILGDKVGVIPSSEEIKTEIKRQPYFQVNGQFS 132

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSI--------------------WPDVVKNDFMLKY 156
              +   L    +    F++ +  Q                        +          
Sbjct: 133 INRYKDLLAANRMNPAQFEESIKDQVRGMNSDAIFTSMPISESYLKDVENFRSQKIEANI 192

Query: 157 GNLEMEIPANKQKMKNITVREY----LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
             ++ E    K  + N  + +Y         + S+ + +       ++        +   
Sbjct: 193 IEIDKEALRKKLTISNDEITKYLADETNANRVQSLFNERKPTLDQKEEVKARHILFKTDG 252

Query: 213 PKDCNKLEKF--------------------ASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
             D  KL+                        +    + G  ++     + P+F+ +  +
Sbjct: 253 KNDKQKLKAITTLRGKLTKSNFISQAKQHTEEEAGKSTGGDLRWFTRGAMVPEFEKVAFE 312

Query: 253 -SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
                 + P  T  G   I + DK++     A       Q     I K + + V+ + + 
Sbjct: 313 LKPGTISRPVKTPFGYHIIYVEDKKEAK--EATLEEFKNQLASELIRKTKNDEVEAMATE 370

Query: 312 AI 313
           A 
Sbjct: 371 AK 372


>gi|221198210|ref|ZP_03571256.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans CGD2M]
 gi|221209208|ref|ZP_03582200.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans CGD2]
 gi|221170946|gb|EEE03401.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans CGD2]
 gi|221182142|gb|EEE14543.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans CGD2M]
          Length = 644

 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/273 (8%), Positives = 61/273 (22%), Gaps = 22/273 (8%)

Query: 53  DGDISKRIALLKLQ-KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
             D+ +   L+  Q     + ++     L ++ +    +  +                 R
Sbjct: 133 SIDVERYAQLMSFQGMTPEQYQERVRYSLALQQIPASIVSSAFTPKSLAQRLSELAAQQR 192

Query: 112 NTGLSAEDFSSFLDKQGIGDNH---FKQYLAIQSIWPDVVKNDF--------MLKYGNLE 160
                    S +  K    D     +      Q   P+    ++               +
Sbjct: 193 EVQALVLKTSDYASKVQPTDAQLAAYYDAHKQQFATPETATIEYLVYSPAAAAASAQPTD 252

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            +I             E  +R     I      +          AE+    +    ++  
Sbjct: 253 ADIKKFYDDNPTHFRTEAQVRVSHIFIAAASDASAADKAAAKAKAEQLLADVKARPDQFA 312

Query: 221 KFA-----SKIHDVSIGKAQYLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAI 272
           + A             G   ++                   Q   +    +  G   +  
Sbjct: 313 QIAEKNSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFALKQGEISGVVQSDLGFHILKA 372

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAE 303
            D +   +     +K  ++A        K  ++
Sbjct: 373 TDVKPSIVKPFAEVKDEIAATLKQQYAAKAFSD 405



 Score = 47.0 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/211 (9%), Positives = 54/211 (25%), Gaps = 15/211 (7%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN-------------GELE 73
            V I  ++ +   S     +NG  IT  +          Q                 +  
Sbjct: 26  FVGIQGFRGFFDESANVAAVNGHKITRVEFDGAFRQQIDQARQALGAQFDIKAFDTPDHR 85

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQHARNTGLSAEDFSSFLDKQGIGD 131
           K  +  LI + +   E ++  +T   N V           +              Q +  
Sbjct: 86  KQVLDGLIQQRVLADETQRLHLTASDNAVREALLSDPMIASLKKPDGSIDVERYAQLMSF 145

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                    + +   +          +      +  Q++  +  ++  ++ ++    D  
Sbjct: 146 QGMTPEQYQERVRYSLALQQIPASIVSSAFTPKSLAQRLSELAAQQREVQALVLKTSDYA 205

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            + Q    +     +  + +         ++
Sbjct: 206 SKVQPTDAQLAAYYDAHKQQFATPETATIEY 236


>gi|15837793|ref|NP_298481.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa 9a5c]
 gi|9106161|gb|AAF84001.1|AE003953_5 peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa 9a5c]
          Length = 655

 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/268 (8%), Positives = 69/268 (25%), Gaps = 19/268 (7%)

Query: 57  SKRIALLKLQKIN---GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
             R  LL  Q+      ++ +  V+ ++  ++    I  SG   ++       +      
Sbjct: 152 QDRYRLLLAQEPTMRTPQMYENYVRSMMQLSMIPSTIFDSGFVPNTELERILVLLGQTRN 211

Query: 114 GLS---AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF---------MLKYGNLEM 161
                         +   +    +          P+ +  ++                 +
Sbjct: 212 AELVTLPALKLDMAEISDMQIKEWYAAHRDDFRQPETLSFEYVDLDAAHLPRPTPSEAVL 271

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
               + Q+       +     +L +   +    +    K  K  EE+R            
Sbjct: 272 RKRYDAQQRGEAQNEQRKAAHILITAGADAASQKVAEAKAAKLVEEARKPGVDFAALARI 331

Query: 222 FASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
            +       + G   ++    +   F+++           P  T+ G   I + + +   
Sbjct: 332 NSQDPGSKDAGGDLGWVQRGMMVKPFEDVLFAMKVGEVVGPIKTEFGNHVIKLEEIK--A 389

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKK 307
            +      +  Q    + ++   +    
Sbjct: 390 AKQLPFEAVRDQLAAEQTKEDIDKEFND 417


>gi|300114915|ref|YP_003761490.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
           watsonii C-113]
 gi|299540852|gb|ADJ29169.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
           watsonii C-113]
          Length = 304

 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/312 (8%), Positives = 79/312 (25%), Gaps = 34/312 (10%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING 70
            F   +T+  +L           ++      +       V+T  D    +  +  Q    
Sbjct: 4   GFKSGITSILILSALVAFGA---RAAEPEEEVLIRYKDIVVTAADFQAELETIPEQ---- 56

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
                                ++ I      ++    +      L+ E     L++    
Sbjct: 57  --------------------YRANIAASGERIHQLLDKIFTYRVLAKEAQEQGLEQNPEV 96

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI--PANKQKMKNITVREYLIRTVLFSIP 188
               K           + +        N + E       Q       +   ++     I 
Sbjct: 97  QQELKLEKEEILGKARLRQLRQQALADNPDFEALARERYQANPEKYQQPERVKVSHILIK 156

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYLLESDLHPQFQ 247
             +   +   +   +  + +            +++     + + G   ++ +      F+
Sbjct: 157 PEERSEEEARELAEQVRQLALTDEKPFSELALQYSEDPSLEKNKGDLGFIAKGMTTQSFE 216

Query: 248 NLLK--KSQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAE 303
                 +     +    ++ G   I + +++         +K  L      T + +    
Sbjct: 217 EAAFALEQPGAISPVVKSRFGFHIIRLEERQAPKTKSFAEVKESLVEDIKATHLNQVVQT 276

Query: 304 YVKKLRSNAIIH 315
           ++ ++R+   I 
Sbjct: 277 HLNQIRNAEGIQ 288


>gi|187923900|ref|YP_001895542.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phytofirmans PsJN]
 gi|187715094|gb|ACD16318.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phytofirmans PsJN]
          Length = 645

 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/271 (9%), Positives = 66/271 (24%), Gaps = 22/271 (8%)

Query: 55  DISKRIALLKLQ-KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
           D+ +   LL +Q     + ++     +  + L       +  +           +  R  
Sbjct: 135 DVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPASIQGSAFTSKTLAQHLTELAEQQREV 194

Query: 114 GLSAEDFSSFLDKQGIGDNH---FKQYLAIQSIWPDVVKNDFM--------LKYGNLEME 162
              A     +  K    D     +      +   P      ++              + +
Sbjct: 195 QGIAFHPRDYAAKVQPTDAQLQAYYDAHRNEFATPATATIQYVVMSPATLAASAQPSDAD 254

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +             +  +R     I   K  +     K  + AEE   ++    ++  + 
Sbjct: 255 LKKYYDDNIAHYRTDGQVRASHILIAAPKDASAADKAKAKQKAEELLAQIKAHPDQFAQI 314

Query: 223 ASKIH-----DVSIGKAQYLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAICD 274
           A +           G   Y     +         +    ++  +    T  G   + + D
Sbjct: 315 AQQNSQDPGSASKGGDLGYFGRGMIAGGKAFDDAVFALKKDEVSGIVQTDFGYHIVKVTD 374

Query: 275 KRDL--GGEIALKAYLSAQNTPTKIEKHEAE 303
            +         +K  +S         K   +
Sbjct: 375 VKPAVTKPFDEVKDQISKDLKAQLASKAFTD 405



 Score = 54.3 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/228 (8%), Positives = 57/228 (25%), Gaps = 15/228 (6%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN 69
              +  +    ++     V I  ++ +   S    ++NG  IT  +    +     +   
Sbjct: 9   KRLMMFMLILVIVPGLGFVGIQGFRGFFDESANVASVNGHKITRAEYDDAMRQQLDRARQ 68

Query: 70  -------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV--QHARNTG 114
                         E     +  LI + +   E ++  +T   + V    +      +  
Sbjct: 69  MLGAQFDMKSFDTPERRAQMLDGLIEQRVLADETQRLHLTASDDAVRRVLMSDPVISSLK 128

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
                      KQ +           + +   +                    Q +  + 
Sbjct: 129 NPDGTIDVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPASIQGSAFTSKTLAQHLTELA 188

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            ++  ++ + F   D   + Q    +     +  R           ++
Sbjct: 189 EQQREVQGIAFHPRDYAAKVQPTDAQLQAYYDAHRNEFATPATATIQY 236


>gi|300311549|ref|YP_003775641.1| peptidyl-prolyl cis-trans isomerase D [Herbaspirillum seropedicae
           SmR1]
 gi|300074334|gb|ADJ63733.1| peptidyl-prolyl cis-trans isomerase D protein [Herbaspirillum
           seropedicae SmR1]
          Length = 639

 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 75/249 (30%), Gaps = 14/249 (5%)

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            ++AVQ+L           K+     S   +        N    +      L  + + D 
Sbjct: 155 REMAVQQLNAAIQTTAFAPKTVAENLSALNDQERTVQMLNFKPDSYASQVKLSDEMLKDY 214

Query: 133 HFKQYLAIQSIWPDVVK------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
           + K     ++     ++           +    + +I A  ++ K +   E   R     
Sbjct: 215 YDKNSARFETPEQADIEYVVLDAAAVAAQAAVTDDDIKAYYEQNKKLYATEEQRRASHIL 274

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-----DVSIGKAQYLLESD 241
           I   K  +          AE    +L K+  +  K A           + G   Y  +  
Sbjct: 275 IAVKKDASAADQAAAKSKAEGLVAQLRKNPGEFAKLAKANSQDPGSAENGGDLGYFGKGA 334

Query: 242 LHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIE 298
           +   F++      Q   ++P  +  G   I +   +    +   ++KA + ++       
Sbjct: 335 MVKPFEDAAFSLKQGEISDPVQSDFGYHIIEVTGIKPAAVKPLESVKAEIGSEIKKQIAA 394

Query: 299 KHEAEYVKK 307
           K  +E   +
Sbjct: 395 KKYSEMADQ 403



 Score = 49.7 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/164 (11%), Positives = 44/164 (26%), Gaps = 19/164 (11%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T     ++ L   F+   F    +  Y      +     + G+ IT  +     
Sbjct: 1   MFDFIRTH-QRLMQFLLLLFIFPSFAFFGLEGYSRLTDDNG-VAKVAGQTITKEEWDAAH 58

Query: 61  ALLKLQKIN-------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
                +                 +  +  +  LI +     E+  S +      +    +
Sbjct: 59  RQQLERMRQVYGNQFDSKIFDSPQARRAILDNLIAQRALGAEVVASKLVVPDQVLQQSIL 118

Query: 108 Q----HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           Q       +     E +   L  QG+    ++  L  +     +
Sbjct: 119 QIPGLTKADGKFDNEQYRVLLAAQGMTPKSYEAGLRREMAVQQL 162


>gi|225628752|ref|ZP_03786786.1| Chaperone surA precursor [Brucella ceti str. Cudo]
 gi|260167067|ref|ZP_05753878.1| peptidyl-prolyl cis-trans isomerase, putative [Brucella sp. F5/99]
 gi|261756460|ref|ZP_06000169.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. F5/99]
 gi|225616598|gb|EEH13646.1| Chaperone surA precursor [Brucella ceti str. Cudo]
 gi|261736444|gb|EEY24440.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. F5/99]
          Length = 311

 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/280 (10%), Positives = 77/280 (27%), Gaps = 40/280 (14%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             ++NG  I + DI         +     L   A    + E L ++              
Sbjct: 51  AVSVNGVTIDEADILTEAQNHPAENPGAALLSAARALAVRELLLQRAR------------ 98

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                ++ +   D   +      ++   V++ +  +       E
Sbjct: 99  ------------------EIGIEPEHEKDAEGRAETDEDALVRMVIEREVDV-PSASRDE 139

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE-- 220
                +  ++      ++      I  +    +     R      +   + +        
Sbjct: 140 AQRYYENNRHRFTSAPILEASHILIAADPADQETRDAARQTATRLAAAVIAEPATFASVA 199

Query: 221 -KFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN--PYVTQKGVEYIAICDKR- 276
            +++S       G    L      P+F+  L++     T   P   + G   + + D+R 
Sbjct: 200 LEYSSCPSGAQGGNLGQLTRGSTVPEFERALERMTPGETTANPIENRFGYHIVRL-DRRV 258

Query: 277 --DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             +      +   ++     +   K  ++Y+  L + A I
Sbjct: 259 EGEELPFDYVADKIAGWLEASTWSKAVSQYIAILAAEAEI 298


>gi|300871204|ref|YP_003786077.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brachyspira
           pilosicoli 95/1000]
 gi|300688905|gb|ADK31576.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brachyspira
           pilosicoli 95/1000]
          Length = 295

 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 90/294 (30%), Gaps = 18/294 (6%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKI---NGELEKIAVQELIVETLKKQEIEKSGIT 96
           + I   +    IT  D   R + L LQ         + +  ++L+ E +   ++++    
Sbjct: 3   NSIVGVVGSIPITYEDFVSRKSFLSLQARSIGKKINDDMVYKDLVEERIMYLKLKEYNYV 62

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML-K 155
            + N V+      A    L+ + F+  L  +GI  + ++  +  Q    ++        +
Sbjct: 63  IEENDVSRRLENIANQYNLTLDQFAKQLKAEGISYDEYRNSIKKQIAMENLSGLVVNNTE 122

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
             + E +   N  K K     + L++             +G  Q+          R    
Sbjct: 123 ITDAEADEYYNNSKDKTAFEVDTLVKLSWIFFKATTFTEKGEKQELADKVRGMAARGNDF 182

Query: 216 CNKLEKFASKIHDVS-IGKAQYL-----LESDLHPQFQ-----NLLKKSQNNTTNPYV-T 263
               +K++      +  G   Y       +  L  Q                 ++     
Sbjct: 183 AELAKKYSDDEKTKNYGGDLGYNLLYDAGKRSLPAQVNAGLTLAKRGYKVGTVSSVRELV 242

Query: 264 QKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            KG   + I + +      +++  +    +  ++     +++        I  Y
Sbjct: 243 GKGFYIVKIVEIQ--KDMDSIRTRVKNYLSEIRMRDSFVKWLDDETKRVTIKLY 294


>gi|270339925|ref|ZP_06006472.2| peptidyl-prolyl cis-trans isomerase [Prevotella bergensis DSM
           17361]
 gi|270333285|gb|EFA44071.1| peptidyl-prolyl cis-trans isomerase [Prevotella bergensis DSM
           17361]
          Length = 483

 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 66/247 (26%), Gaps = 12/247 (4%)

Query: 47  NGEVITDGDIS--KRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
             E I   DI   +   + +        +    ++L V+ L   +     I    + V  
Sbjct: 66  GDEPILRSDIEMMRMQGMAEGISWGSNPDCAIPEQLAVQKLFLHQAAIDSIEVSESEVAS 125

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK---NDFMLKYGNLEM 161
              Q  R    +A       + +    N  +  L        +++      +        
Sbjct: 126 GVEQQIRRWIETAGGQEKLEEYRKQSVNEMRMSLHDDFKNQQLIQKMKQKLVEDIKVSPA 185

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK----DCN 217
           ++    + +   ++        +  I  +    Q  + +          R+         
Sbjct: 186 DVRRFFRSLPQDSIPFVPTEVEVQVIERSPKIKQEEINRVKDLLRSYTDRVTNGEITFAT 245

Query: 218 KLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQN--NTTNPYVTQKGVEYIAICD 274
               ++         G+  Y+    L P F N+     +    +    T  G   I + D
Sbjct: 246 LARLYSEDPVSARVGGEMDYIGRGLLDPAFANVAFNLTDPKKISKIVETDFGFHIIQLID 305

Query: 275 KRDLGGE 281
           KR    +
Sbjct: 306 KRGDKIK 312


>gi|209521454|ref|ZP_03270162.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           H160]
 gi|209498110|gb|EDZ98257.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           H160]
          Length = 644

 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/263 (10%), Positives = 68/263 (25%), Gaps = 17/263 (6%)

Query: 52  TDGDISKRIAL-LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           T     +R+   L +Q++   +E  A      +TL +   E +    +   + +    +A
Sbjct: 149 TPDQYDERVRYNLAMQQLPASIEASAFTS---KTLAQHLTELAQQQREVQGIAFHPHDYA 205

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                +     ++ D                 +                + ++       
Sbjct: 206 AKVQPTDAQLQAYYDAHRNDFATPATATIQYLVMSP---ATLSASMQPSDADLKKYYDDN 262

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH--- 227
                 E  +R     I   K  +     K  + AEE   ++    ++  + A +     
Sbjct: 263 IAHFRTEGEVRASHILIAAPKDASAADKAKAKQTAEELLAQVKAHPDQFAQIAQQNSQDP 322

Query: 228 --DVSIGKAQYLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGG 280
                 G   Y     +              ++  +    +  G   I + D +      
Sbjct: 323 GSASKGGDLGYFGRGMIAGGQAFDDAAFALKKDEISGIVQSDFGFHIIKVTDVKPTVTKS 382

Query: 281 EIALKAYLSAQNTPTKIEKHEAE 303
              +K  ++ +       K   +
Sbjct: 383 FDEVKDQIAKELKTQLATKAFTD 405



 Score = 55.1 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/237 (8%), Positives = 62/237 (26%), Gaps = 16/237 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M     T     +  +    +L     V I  ++ +   +    ++NG  IT  +    +
Sbjct: 1   MLDFFRTH-QRLMMFMLILVILPGLGFVGIQGFRGFFDENANVASVNGHKITRVEYDDAM 59

Query: 61  ALLKLQKIN-------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
                +                 E  ++ +  +I + +   E ++  +T   + V    +
Sbjct: 60  RQQLDRGRQMLGAQFDMKSFDTPERRRMMLDGMIEQRVLADETQRLHLTASDDAVRRTLM 119

Query: 108 --QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
                 +             KQ +           + +  ++                  
Sbjct: 120 SDPVISSLKNPDGSIDLDRYKQLLAMQGMTPDQYDERVRYNLAMQQLPASIEASAFTSKT 179

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
             Q +  +  ++  ++ + F   D   + Q    +     +  R           ++
Sbjct: 180 LAQHLTELAQQQREVQGIAFHPHDYAAKVQPTDAQLQAYYDAHRNDFATPATATIQY 236


>gi|319654925|ref|ZP_08008999.1| hypothetical protein HMPREF1013_05621 [Bacillus sp. 2_A_57_CT2]
 gi|317393350|gb|EFV74114.1| hypothetical protein HMPREF1013_05621 [Bacillus sp. 2_A_57_CT2]
          Length = 288

 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/309 (11%), Positives = 86/309 (27%), Gaps = 38/309 (12%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           ++    VL+    +  + +K           + G+ IT  +    +          +  K
Sbjct: 8   MIIAGLVLLNLITLAFLLFKGDGSGEA-VAKVGGDKITRQEWMSEMET--------KYGK 58

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             + ELI + + ++  EK G+      V+          G +              D   
Sbjct: 59  STLSELIDQKVIEEAGEKYGVKVSEKAVDLELKMVKTMYGGN------------FTDEMS 106

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
           +     Q     +++          E E+ +  ++  +              +   +   
Sbjct: 107 EDKWRRQIKNNLILEELLTADVSVSEEEMKSYYEQNSSQFQVPDTYHISQIIVKTKEEAE 166

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESD---LHPQFQNLL 250
           Q   +                     + +         G A Y+ E D       F+ + 
Sbjct: 167 QTLKE---------LDEGSSFSVLAMERSIDEFTASLGGNAGYVSEDDEHIPAEVFEQVK 217

Query: 251 KKSQNNTTNPYVTQKGVEYIAICD--KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
                  T P  T+ G   + + +  K +      +K+ +  Q    +++   +   K  
Sbjct: 218 TLKPGKWTKPIKTENGYAVVMLHEHLKGENYSFKEVKSMIRRQIALEQMDVPVSA--KPF 275

Query: 309 RSNAIIHYY 317
              A + ++
Sbjct: 276 WKEAEVEWF 284


>gi|301165392|emb|CBW24963.1| putative chaperone SurA precursor (peptidyl-prolyl cis-trans
           isomerase) [Bacteriovorax marinus SJ]
          Length = 303

 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/307 (12%), Positives = 85/307 (27%), Gaps = 20/307 (6%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL--------E 73
           LI   I    S     +  +     N  VIT   I +    +  ++    L         
Sbjct: 4   LIFLIIFLTFSQTHAKLLDKTAAVFNDTVITLSQIERIQNNIASRRNISPLIYKKQKYTN 63

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
              ++ +I   L ++++ + G   +   V        +  GLS     SFL    +  + 
Sbjct: 64  SEILELMIERLLIREKLSEIGYIRNDEQVEAEINNIEKRLGLSRSQLLSFLKSNNMSFDE 123

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
           + + +     +               + E+     K        +    V     D  L+
Sbjct: 124 YFEIIRETIEFNIFNGRVIRPLISITDQEVKNYFYKTSKDKTLAFKYTIV-----DFSLE 178

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKK 252
                +  +     +  +   +    + F     +V       + E  L    +  L   
Sbjct: 179 ETKMKKGMLNIFPATLEKFQVNGVLPKNFEDVQTNV----LGDITEDGLTNNLKALLKNT 234

Query: 253 SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
            +   T P           +  K   +    +  K  +  +    +  +  + + K+ +S
Sbjct: 235 DEGKFTKPIKLGDTYHVFFVKKKDLVESEIYLRAKDQIKGKLMGEQAGEVTSLWYKRAKS 294

Query: 311 NAIIHYY 317
              I  +
Sbjct: 295 KHYIKTF 301


>gi|167647829|ref|YP_001685492.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter sp. K31]
 gi|167350259|gb|ABZ72994.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter sp. K31]
          Length = 372

 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 62/238 (26%), Gaps = 6/238 (2%)

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I E L  +E +       +          A    L        L  +   D   ++    
Sbjct: 16  IPEFLIAEEAQNHPSLSVAEARRAAGKALAVRALLLHRADELGLRPEPEHDEAGREETDE 75

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           +++   V+  +  ++  + E+       +    T    +    +   P  +        +
Sbjct: 76  EALIRAVLDEEIDIETPSTELCRRIYDTQRSRFTSPALVEAAHILIAPQGEEDAHWEAAR 135

Query: 201 --RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNT 257
              +   +    +  +     +  +S       G    L   D+  + +  L        
Sbjct: 136 LTAVDAVKTLTRQPGQFAALAKALSSCPSAEVGGSLGQLGPGDVVSEIEQALTALRPGQV 195

Query: 258 TN-PYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
            + P  ++ G   + +  + +        ++  +               YV  L   A
Sbjct: 196 LDQPVRSRFGWHVLKLDRRIEGRELPFDYVEDKIRLHLESRAWTAAATRYVSDLADRA 253


>gi|320449245|ref|YP_004201341.1| peptidyl-prolyl cis-trans isomerase, PpiC family [Thermus
           scotoductus SA-01]
 gi|320149414|gb|ADW20792.1| peptidyl-prolyl cis-trans isomerase, PpiC family [Thermus
           scotoductus SA-01]
          Length = 605

 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/330 (7%), Positives = 73/330 (22%), Gaps = 29/330 (8%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSS---RIRTTINGEVITDGDISK-RIA 61
              +S     +    + + F +  I+ +   A      +    +NG+ + + D+ + +  
Sbjct: 1   MFGISKKAITILFGLLALAFAVGAILLFTPQAGQQARGKPVLWVNGKAVYELDLLRLQGN 60

Query: 62  LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
                     L K  V    +E +   E  K               +  R          
Sbjct: 61  DPLYAANPQGLLKTLVDTHFLEQVILTEALKQDAARIRVGSAEVRKEVDRIREQFGLKEK 120

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKND---FMLKYGNLEMEIPANKQKMKNITVREY 178
              ++      +    L  +      ++               E+    +  +     E 
Sbjct: 121 KAYEQFLNQVGYTDAQLRSEIKTQLQIQKRLEQIRSAAKPTPEEVRFYFEVHQEDYKGEP 180

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
            ++                  K   +               ++++  +     G      
Sbjct: 181 RLKARQIV---------VDEAKLAAELLAKAKAGEDFAALAKQYSK-VGAEQGGALGAGP 230

Query: 239 ESDLHPQF----------QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG--EIALKA 286
                             + +  +       P         + + +           +K 
Sbjct: 231 GESEPKPVTKVVFPDKVAEAVFAQKGPGLVGPVEAGGRYYLVKVEEYLPAKVPTFEEIKE 290

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            +       K       Y++ LR  A + +
Sbjct: 291 QVEKDAQAAKGNGALEAYLENLRQKAQVRF 320



 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/293 (7%), Positives = 66/293 (22%), Gaps = 31/293 (10%)

Query: 52  TDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
           T  +I +++             +  ++ L     K Q        F    +    V    
Sbjct: 284 TFEEIKEQVEKDAQAAKGNGALEAYLENL---RQKAQVRFAEDSPFSYKNLPVAKVNEQE 340

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
                         +           LA+Q   P  +++    +      +         
Sbjct: 341 ILLAQVLQPVFSNQQTAALIQQGLGDLAVQFFLPQTLESLIERELLVEAAKKSGKPFIGS 400

Query: 172 NITVREYLIRTVLFSIPDNKLQN---QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
              + +  +      +   + +                 + +       + +  A +   
Sbjct: 401 KDQIAQAYLLYETRGLTATEEEARRFYAENPALFTIPASAEVTGVVFKAEAKAKAFREAA 460

Query: 229 VSIGKA--------------QYLLESDLHPQF--------QNLLKKSQNNTTNPYVTQKG 266
           +  G                  +  + L            +   K      +     + G
Sbjct: 461 LRGGDLQALAKAQEGTVTEYGTVSPNQLPAVLDRLVFKVKETFPKGPMGEVSEVVKLEDG 520

Query: 267 -VEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
               + + +++         +      +   +K ++     V++LR  A I  
Sbjct: 521 TFAVLLVKNRKPEVLKPFNEVVEEAKERVILSKRQQKGQALVQELRKAAKIEN 573


>gi|296157831|ref|ZP_06840665.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           Ch1-1]
 gi|295892077|gb|EFG71861.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           Ch1-1]
          Length = 645

 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/263 (9%), Positives = 67/263 (25%), Gaps = 17/263 (6%)

Query: 52  TDGDISKRIAL-LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           T     +R+   +  Q++   ++  A      +TL +   E +    +   + +    +A
Sbjct: 149 TPDQYDERVRYSIATQQLPASIQGSAFTS---KTLAQHLTELAEQQREVQGIAFHPRDYA 205

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                +     ++ D                 +                + ++       
Sbjct: 206 AKVQPTDAQLQAYYDAHRNDFATPATATIQYLVMSP---ATLATSVQPSDADLKKYYDDN 262

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH--- 227
                 E  +R     I   K  +     K  + AEE   ++    ++  + A +     
Sbjct: 263 IAHYRVEGQVRASHILIAAPKDASAADKAKAKQKAEELLAQIKAHPDQFAQLAQQNSQDP 322

Query: 228 --DVSIGKAQYLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL--GG 280
                 G   Y     +         +    ++  +    T  G   + + D +      
Sbjct: 323 GSASKGGDLGYFGRGMIAGGQAFDDAVFALKKDEVSGIVQTDFGYHIVKVTDVKPAITKP 382

Query: 281 EIALKAYLSAQNTPTKIEKHEAE 303
              +K  +S         K   +
Sbjct: 383 FDEVKDQISKDLKTQLASKAFTD 405



 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/228 (8%), Positives = 56/228 (24%), Gaps = 15/228 (6%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN 69
              +  +    ++     V I  ++ +   S    ++NG  IT  +    +     +   
Sbjct: 9   KRLMMFMLILVIVPGLGFVGIQGFRGFFDESANVASVNGHKITRAEYDDAMRQQLDRARQ 68

Query: 70  -------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQHARNTG 114
                         E     +  LI + +   E ++  +T   + V           +  
Sbjct: 69  MLGAQFDMKSFDTPERRSQMLDGLIEQRVLADETQRLHLTASDDAVRRVLLNDPVISSLK 128

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
                      KQ +           + +   +                    Q +  + 
Sbjct: 129 NPDGTIDVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPASIQGSAFTSKTLAQHLTELA 188

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            ++  ++ + F   D   + Q    +     +  R           ++
Sbjct: 189 EQQREVQGIAFHPRDYAAKVQPTDAQLQAYYDAHRNDFATPATATIQY 236


>gi|330689731|pdb|3RGC|A Chain A, The Virulence Factor Peb4 And The Periplasmic Protein
           Cj1289 Are Two Structurally Related Sura-Like Chaperones
           In The Human Pathogen Campylobacter Jejuni
 gi|330689732|pdb|3RGC|B Chain B, The Virulence Factor Peb4 And The Periplasmic Protein
           Cj1289 Are Two Structurally Related Sura-Like Chaperones
           In The Human Pathogen Campylobacter Jejuni
          Length = 252

 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/279 (11%), Positives = 75/279 (26%), Gaps = 32/279 (11%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS 99
           + I   ++ E IT  DI + +  LK+          A+  LI E ++  ++++ GI  + 
Sbjct: 1   NAIAVVVDKEPITTYDIDQTMKALKID------RNKALGVLINEKMEISQMKQLGIVVND 54

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
             ++    +       +   F + L  +      F+           + +    +   + 
Sbjct: 55  LELDDAINKMLAQNKTTLNAFKANLKSKNQSYEQFRTNFKKDLEKRKLYEKIASMAKTDF 114

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
             +      +        Y        + +N    +     +    +     L       
Sbjct: 115 SDDGAKKFFEQNKDKFTFYTQINANIYLSNNPQTLENIKNTKKTILKPQNASLN------ 168

Query: 220 EKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK--RD 277
                               +        L +    + +     + G E   +  K    
Sbjct: 169 ------------------TSNADPRLLGLLSQIPVGSFSPVLNGKNGYELYEVKSKDGTQ 210

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                 +K  +       + +    +Y  KLRS   I Y
Sbjct: 211 TPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKINIEY 249


>gi|289435560|ref|YP_003465432.1| prsA protein, protein export protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289171804|emb|CBH28350.1| prsA protein, protein export protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 295

 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/304 (10%), Positives = 89/304 (29%), Gaps = 40/304 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +L +  ++ + S  +    S +  T  G+ +T  ++ + +          +    
Sbjct: 1   MKKKMILGLVMLMAMFSLAACGGGSDVVKTDAGD-VTQDELYEAMK--------DKYGNE 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            VQ+L  E +   + + +    DS                    +    D         +
Sbjct: 52  FVQQLTFEKILGDKYKVTDEQVDSE------------FKKYKSQYGDQFDAVLAQSGLTE 99

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    Q  +  +V+          +  +    +                +          
Sbjct: 100 ETFKSQLKYNMLVQKATEANTDTSDKALKEYYKT---------------WQPDITVSHIL 144

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLK--K 252
              + + K+ E+      K  +  +++++      + GK        + P F+      K
Sbjct: 145 VADEAKAKEVEQKLKDGEKFADLAKEYSTDTATKDNGGKLAPFGPGKMDPAFEKAAYALK 204

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA-QNTPTKIEKHEAEYVKKLRSN 311
           ++ + ++P  TQ G   I + +          K  +           ++  + +KK   +
Sbjct: 205 NKGDISDPVKTQYGYHIIQMDEPATKTTFDKDKKAVKESYLQSQLTTENMQKTLKKEYKD 264

Query: 312 AIIH 315
           A + 
Sbjct: 265 ANVK 268


>gi|91776379|ref|YP_546135.1| hypothetical protein Mfla_2027 [Methylobacillus flagellatus KT]
 gi|91710366|gb|ABE50294.1| conserved hypothetical protein [Methylobacillus flagellatus KT]
          Length = 314

 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/319 (10%), Positives = 90/319 (28%), Gaps = 42/319 (13%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFC--IVPIVSYKSWAMSSRIRTTINGEVITDGDISK 58
           M ++  +++  + K+     V ++    +       +   +S+    +NG+ IT   +++
Sbjct: 1   MNTEYGSTIMQWSKMTKGALVALMISIGLSGCGDKSNETKASQSLARVNGKEITVHQLNE 60

Query: 59  RIALLKLQ-KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
            +A   +Q        K  +Q LI   L +Q   K+ +  D N +               
Sbjct: 61  ELARANVQPAQKEAATKQILQSLIDRQLLEQAALKAKVDRDPNVMQAI------------ 108

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
                             +    Q I    +++         + E+    ++   +    
Sbjct: 109 ------------------ERAKSQMIAQAYLQSRVANIGKPDKTEVENFYKQNPQLFSER 150

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
            L+      I    + +         + + +               +K      G+    
Sbjct: 151 KLVEMEQILIDSRYVND---------EFKSALGSFKTLQEVAAWLDAKGIQYDRGEVARS 201

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
           +        + L    +       +  + +  +    K            +       K 
Sbjct: 202 VAELPPQISERLKDARRGQLFVIGMGPRTMLVLMDSVKESPVSLADATPQIEQMLLNKKR 261

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           ++     +K+LR+ A I Y
Sbjct: 262 KEAGEAEIKRLRAEAKIEY 280


>gi|326566313|gb|EGE16464.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis 12P80B1]
          Length = 367

 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/190 (10%), Positives = 61/190 (32%), Gaps = 8/190 (4%)

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM-KNITVREYLIRTVLFSIPDNK 191
                   ++    +++   + K  +             + ++     +R +L + P  +
Sbjct: 163 ERAWLENEEATIAKLLEQKVIAKSPDKASCQNYYHANQVEFVSTPIMTLRHILLACPPQE 222

Query: 192 LQNQGFVQKRIKDAEESRL----RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
            + +  ++K+ +   +       R         ++++       G+   L +    P+F+
Sbjct: 223 GEERIELKKQARQLIDRLNQSHNRDSDFIEFARRYSACPSKDDGGELGVLQKGSTVPEFE 282

Query: 248 NLLKKSQNNTT-NPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEY 304
           + +       + NP  T+ G+  I +  K++            +              +Y
Sbjct: 283 SAVFALPVGISINPIETRYGIHVIEVLQKQEGRQLSFEEAYPIIENHLKQQSFHHSLCDY 342

Query: 305 VKKLRSNAII 314
           + +L   A I
Sbjct: 343 LFELSQKADI 352


>gi|239833408|ref|ZP_04681736.1| Chaperone surA precursor [Ochrobactrum intermedium LMG 3301]
 gi|239821471|gb|EEQ93040.1| Chaperone surA precursor [Ochrobactrum intermedium LMG 3301]
          Length = 301

 Score = 72.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/280 (11%), Positives = 80/280 (28%), Gaps = 40/280 (14%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             ++NG  I + DI               L   A    + E L ++  E   +       
Sbjct: 41  AVSVNGVAINETDILTEAQNHPSDNPGAALLAAARALAVRELLLQRAREAGIV------- 93

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                   +   D   +      ++   V++ +  +       E
Sbjct: 94  -----------------------PEREKDAEGRSETDEDALVRMVIEREVEV-PSATREE 129

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE-- 220
                +  ++      ++      I  +   +Q   + R   A  +   + +        
Sbjct: 130 ALRFYENNRHRFTSAPILEASHILIAADPADSQAREKARATAARLASAVIAEPATFASVA 189

Query: 221 -KFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTN-PYVTQKGVEYIAICDKR- 276
            +++S       G    L      P+F+    + +    T  P  ++ G   + + D+R 
Sbjct: 190 HEYSSCPSGAQGGNLGQLTRGSTVPEFERALERMAAGEITANPIESRFGFHIVRL-DRRI 248

Query: 277 --DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             +      +   ++     +   K  ++Y+  L ++A I
Sbjct: 249 EGEELPFDYVADRIAGWLEASTWSKAVSQYIAILAADAEI 288


>gi|298384794|ref|ZP_06994353.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 1_1_14]
 gi|298261938|gb|EFI04803.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 1_1_14]
          Length = 514

 Score = 71.6 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/291 (9%), Positives = 77/291 (26%), Gaps = 37/291 (12%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           ++   + +    ++A    +   ING+ I   +                  +   +  I+
Sbjct: 6   LLLGWISLFGVLAFAQEDPVVMRINGKEIPRSEFEYSYRRHTDGNGTKLSPREYAELFIL 65

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
             LK +    +G+   S                   D         I     K+ +    
Sbjct: 66  SKLKVEAARAAGLDTTSAFRKQQQAYRINLLRSYLLDDQEMDGNARILYQKMKENVRGGQ 125

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           +    +         +  ++    +          Y +     S+   +L ++    KR 
Sbjct: 126 VQIRQIYKYLPQTITSRHLQEEQARMDS------IYQVIQNQPSVDFARLVDRFSDDKRC 179

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYV 262
           +  E  +     +                                     ++   + P+ 
Sbjct: 180 RWIESLQTTSEFEEAAFS-------------------------------LAKGEISKPFF 208

Query: 263 TQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           T +G+  + + D++++     +   L  +     ++K     V++L+    
Sbjct: 209 TPEGIHILKVIDRKEVPAYEVVSDSLLNRLRRQPLDKGTEAIVEQLKKEYQ 259


>gi|157827644|ref|YP_001496708.1| hypothetical protein A1I_06775 [Rickettsia bellii OSU 85-389]
 gi|157802948|gb|ABV79671.1| hypothetical protein A1I_06775 [Rickettsia bellii OSU 85-389]
          Length = 294

 Score = 71.6 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 92/302 (30%), Gaps = 23/302 (7%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGELEK 74
           ++  I    +  + A +S I   +N E IT  +   R  ++             N +L  
Sbjct: 4   LLLIITVFFTCSAVAETSNIVALVNNEPITLNEFRARKKMIMALNNVEEVTPAQNKQLSD 63

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
           IA++ LI E+L  Q             ++           +       +L    +  + F
Sbjct: 64  IAIKSLIDESLLFQYYGDKE--ISQEEIDNAIKSIEDRNKMPHGSLLQYLKSISVNPDSF 121

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
              +  + I  +V+             EI           V   +         D     
Sbjct: 122 ISQIKSELIKMNVLSG-LSRSVQVSNKEIDVAILSSDQKEVEVSMQIFTSKDKSDKTFAQ 180

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ 254
              ++ ++K+  + +  L ++   +     K+  +               +   +   + 
Sbjct: 181 MNNLKSKLKNCSDVKKSLYENFATMTVITDKLSKIE------------EAKQTIVKDLNP 228

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           N T+N +      E + +C K+ L        Y+    T  KI +   ++ + +   A I
Sbjct: 229 NQTSNVFEKYNEFEIVQVCTKKILNISEEENNYVVNFLTNKKISQKAQKFFEDMHKKAYI 288

Query: 315 HY 316
             
Sbjct: 289 KI 290


>gi|289548355|ref|YP_003473343.1| hypothetical protein Thal_0582 [Thermocrinis albus DSM 14484]
 gi|289181972|gb|ADC89216.1| hypothetical protein Thal_0582 [Thermocrinis albus DSM 14484]
          Length = 275

 Score = 71.6 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/307 (11%), Positives = 99/307 (32%), Gaps = 48/307 (15%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK-------RIALLKLQKINGELE 73
           +L  F +  +++             INGE I   D  +        I  L + + + +  
Sbjct: 3   ILYFFLVFILLAQAQP------VARINGEPIQREDFLRAFNAYWREIIHLPIAQASRKDM 56

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           +  + EL+   + ++E +K G++  S  ++ +  ++  +  LS                 
Sbjct: 57  EEFLIELVRGKIVEREAKKMGLSVTSKELDEYIEKNVGSKNLSPVVIELL---------- 106

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                 ++ +    + +         + +I A                          L 
Sbjct: 107 -----KVEVLTQK-ITDRIARHIRITDDQITAYYYLNLRDFK----------------LP 144

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKK 252
            Q  + + + +  ++   L    +K     S +  V +G   +     L    ++     
Sbjct: 145 AQVLLSRYVAEDLDTANELYYRLSKGYLSVSDLRGVKVGPPMWYSIQTLPEIVKSQLYPY 204

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
            +   T P  T+ G   + +  +R  G       K  +  +    + ++   ++++++  
Sbjct: 205 EEGKVTKPIQTEAGYLILRVVRRRGGGILPLEEAKPLVREKLLKERRQEVFRKWLEEVLQ 264

Query: 311 NAIIHYY 317
           +  + ++
Sbjct: 265 SYRVEFF 271


>gi|88810611|ref|ZP_01125868.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrococcus mobilis
           Nb-231]
 gi|88792241|gb|EAR23351.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrococcus mobilis
           Nb-231]
          Length = 645

 Score = 71.6 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/269 (8%), Positives = 70/269 (26%), Gaps = 16/269 (5%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +    ++I F    + +Y     S+    T+NG  IT  ++   +
Sbjct: 1   MLQTIRDRAQGIVAYIIVGLLIIPFAFFGVYNYF-TGDSNPTVATVNGIDITRAELDAAV 59

Query: 61  ALLKLQKI-------------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
              + Q                  L    +  L+ + +    I   G      ++  F  
Sbjct: 60  QRQQSQLRELLGDQYNPALFDESHLRPQVLDRLVDQAVLLYFIRSQGFRVTDESLRSFIR 119

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
                          +            QY A       + + +  +    +  +    +
Sbjct: 120 SQPYFLADGQFSKERYRAVLRQSGYSTDQYEAQLRQQQLLRQLELGIVGTAVATKHEMAR 179

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK-DAEESRLRLPKDCNKLEKFASKI 226
                   R+     +  +   ++ Q      ++     +++  +  +      + +   
Sbjct: 180 FVALERQSRDLAWLKIDSANFRDQTQVDAKAIQQYYATHKQAFEQPAQVKVSYIELSENA 239

Query: 227 HDVSIGKAQYLLESDLHPQFQNLLKKSQN 255
               + +         + +F++      +
Sbjct: 240 LADQL-ELDDKAVQRFYEEFKDSRFTVPD 267



 Score = 67.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/231 (9%), Positives = 57/231 (24%), Gaps = 3/231 (1%)

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           E  +   +E+         ++    +        A        KQ        +   I+ 
Sbjct: 176 EMARFVALERQSRDLAWLKIDSANFRDQTQVDAKAIQQYYATHKQAFEQPAQVKVSYIEL 235

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
               +     +               +      R      +      ++ Q +    +  
Sbjct: 236 SENALADQLELDDKAVQRFYEEFKDSRFTVPDARRVRHILIKLPKDASQHQIEVARGQIE 295

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPY 261
              E              +          G   ++ + ++     +   K     T+ P 
Sbjct: 296 ALRERIVQGASFAELAQRQSQDVGSARQSGDLGFVRQGEMAKAIDEAAFKLPIGETSEPI 355

Query: 262 VTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
            ++ G   I +   R  G +    + + +Q     +++   +   KL + A
Sbjct: 356 RSRFGWHLIEVTASRAGGVK--PFSEVESQIRQELLKQQSGKRFYKLSNQA 404



 Score = 37.3 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/264 (8%), Positives = 72/264 (27%), Gaps = 16/264 (6%)

Query: 64  KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
              ++  ++ +  +++   ++ K+     +     +          A   GL     + F
Sbjct: 376 PFSEVESQIRQELLKQ---QSGKRFYKLSNQAANYAYEHPDSLEPLAAKFGLKIRQSNWF 432

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                         +   +   +V+K     +  +L  E     +  ++       +  V
Sbjct: 433 SQAGAKEGIASHPKVVKAAFSDEVLKQGLNSQSIDLGDEHQVILRVDQHKPAAVRPLAEV 492

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD-- 241
              + ++ +      Q +   A+           +    A++    S     ++      
Sbjct: 493 RDRVREHLVTVGASEQAQKLGAQLLEKAKSGQSLEALAEANQHARYS--AVGWVRRGSNK 550

Query: 242 LHPQFQNLLKKSQNNTTNPYV------TQKGVEYIAICDKRDL---GGEIALKAYLSAQN 292
           +         +  + +++         +  G   + +   RD      + A +  +    
Sbjct: 551 VPAAIVERGFRLPHPSSDALALAGIELSDGGYGVVEVRGVRDGALDKLDAAERTQVRQGL 610

Query: 293 TPTKIEKHEAEYVKKLRSNAIIHY 316
                E      +  LR  A + +
Sbjct: 611 QRLNAESTLQAMIHVLRQQADVEF 634


>gi|194014491|ref|ZP_03053108.1| foldase protein PrsA [Bacillus pumilus ATCC 7061]
 gi|194013517|gb|EDW23082.1| foldase protein PrsA [Bacillus pumilus ATCC 7061]
          Length = 294

 Score = 71.6 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 88/301 (29%), Gaps = 44/301 (14%)

Query: 21  VLIIFCIVPIVSYKSWAMSSR-IRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQE 79
            L     V +++  + +   + +  T     +T  ++   +          +    A+  
Sbjct: 5   ALAAVTAVSVLTLGACSSGDKDVIATTKSGDVTKEELYTTLK--------KQAGGDALNL 56

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           L+ + +   + + S    D     Y             ++F              K Y+ 
Sbjct: 57  LVQQKVLADKYKVSDKEIDKKMEEYKKTLGEDRLKQLQDEF-------------GKDYIK 103

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
            Q  +  + +          + E+ A    +K      +++                  +
Sbjct: 104 DQVKYELLTQKAAKANIKITDKEVKAYYDDLKGKIRASHIL---------------VADK 148

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYL-LESDLHPQF-QNLLKKSQNN 256
           K   + E+   +  K    + ++++        G   +   E  +   F +   K   N 
Sbjct: 149 KTADEVEKKLDKGEKWDAVVSEYSTDTASAAQGGDVGWFAKEGQMDENFSKAAFKLKVNE 208

Query: 257 TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNAII 314
            + P  +Q G   I   ++R  G    +KA L  +    K          + KL  +A +
Sbjct: 209 ISKPVKSQFGYHIIKKTEER--GKYDDMKADLKKELLNQKQADTNEIQTILNKLVKDADV 266

Query: 315 H 315
            
Sbjct: 267 K 267


>gi|282856786|ref|ZP_06266047.1| hypothetical protein HMPREF7215_0584 [Pyramidobacter piscolens
           W5455]
 gi|282585409|gb|EFB90716.1| hypothetical protein HMPREF7215_0584 [Pyramidobacter piscolens
           W5455]
          Length = 368

 Score = 71.6 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/332 (11%), Positives = 101/332 (30%), Gaps = 30/332 (9%)

Query: 4   KVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAM-------SSRIRTTINGEVITDGDI 56
           ++ T+L   IK +   F++I    V  +     +           +   +NGE +    +
Sbjct: 2   QILTALRTQIKWILALFIVIFTASVGFMYGTGGSSDSDNQRTGDFVVAKVNGEELRISQL 61

Query: 57  SKRIALLKLQKINGEL--------EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
            + +     +    +L         K    E++       E+ +  I+  ++ V+    +
Sbjct: 62  QEHLRSFVERNGIRDLSDKQMPLIYKAVFDEMVSNRAVIDEVARLKISAPADDVDRQLKE 121

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
                 ++ E F   L  QG      K  +A Q     ++++       + +        
Sbjct: 122 VENQY-VTKEAFMQTLKNQGSSLEQVKAEIARQLAINKMLEDVSGGVVVSDDEIKTLYDA 180

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
              N T+   +    +               K  KD +++   +  D  +    ++ +H+
Sbjct: 181 LRGNFTLPAGIEADFVQLKSKEAADKFAEEVKADKDWDKALTIVSADVVQAT--SNDVHE 238

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQ----KGVEYIAICDKRDLGGEIAL 284
                   +   ++  + + +   +    + P          V  I      D+     +
Sbjct: 239 R-------IAAMEMVGKLEPISALNDGEISAPIEITSQDYFVVHRIKAVS-EDVRPLSEV 290

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
              +      +K  + +  Y+K L     +  
Sbjct: 291 SDGIKTMLLQSKKVEAQRNYIKGLTDKMNVEI 322


>gi|295676521|ref|YP_003605045.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1002]
 gi|295436364|gb|ADG15534.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1002]
          Length = 644

 Score = 71.6 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/263 (9%), Positives = 67/263 (25%), Gaps = 17/263 (6%)

Query: 52  TDGDISKRIAL-LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           T     +R+   L +Q++   +   A      +TL +   E +    +   + +    + 
Sbjct: 149 TPDQYDERMRYNLAMQQLPASIAASAFTS---KTLAQHLSELAQQQREVQGIAFHPHDYE 205

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                +     ++ D                 +                + ++       
Sbjct: 206 AKIQPTDAQLQAYYDAHRNDFATPATAAIQYVVMSP---ATLGASVQPSDADLKKYYDDN 262

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH--- 227
                 E  +R     I   K  +     K  + AEE   +L    ++  + A +     
Sbjct: 263 IAHFRTEGEVRASHILIAAPKDASTADKAKAKQKAEELLAQLKAHPDQFAQIAQQNSQDP 322

Query: 228 --DVSIGKAQYLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL--GG 280
                 G   Y     +         +    ++  +    T  G   I + + +      
Sbjct: 323 GSASKGGDLGYFGRGMIAGGQAFDDAVFALKKDEISGIVQTDFGFHIIKVTEVKPAVTKS 382

Query: 281 EIALKAYLSAQNTPTKIEKHEAE 303
              +K  ++ +       K   +
Sbjct: 383 FDEVKDQIAKEVKTQLASKAFTD 405



 Score = 56.2 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/237 (8%), Positives = 59/237 (24%), Gaps = 15/237 (6%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN 69
              +  +    +L     V I  ++ +   S    ++NG  IT  +    +     +   
Sbjct: 9   QRLMMFMLILVILPGLGFVGIQGFRGFFDESANVASVNGHKITRVEYDDAMRQQIDRGRQ 68

Query: 70  -------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQHARNTG 114
                         E  +  +  +I + +   E ++  +T   + V           +  
Sbjct: 69  MLGAQFDMKAFDTPERRREMLDGMIEQRVLADETQRLHLTASDDAVRRALLSDPVISSLK 128

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
                      KQ +           + +  ++                    Q +  + 
Sbjct: 129 NPDGSIDLERYKQLLAMQGMTPDQYDERMRYNLAMQQLPASIAASAFTSKTLAQHLSELA 188

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
            ++  ++ + F   D + + Q    +     +  R           ++         
Sbjct: 189 QQQREVQGIAFHPHDYEAKIQPTDAQLQAYYDAHRNDFATPATAAIQYVVMSPATLG 245



 Score = 38.9 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/55 (14%), Positives = 15/55 (27%), Gaps = 1/55 (1%)

Query: 264 QKGVEYIAICDK-RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
             G     +         +    A    Q      +     Y+K LR  + + +Y
Sbjct: 578 DDGYAIYRVNRIVPPAATDAQHLAVAQQQIAQVDAQSQAEAYLKALRERSKVQFY 632


>gi|94985701|ref|YP_605065.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
           geothermalis DSM 11300]
 gi|94555982|gb|ABF45896.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
           geothermalis DSM 11300]
          Length = 635

 Score = 71.6 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/302 (9%), Positives = 73/302 (24%), Gaps = 26/302 (8%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--INGELEKIAVQELIVETLKK 87
           + +      +      +NG+ +T  ++              +G L       ++ +  ++
Sbjct: 25  VGALFGRRQAGTPALKVNGQTVTAEELEAIRRSFPALAGFESGPLADDLKTYVVAQKARQ 84

Query: 88  QEIEKSGITFDS---NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
             + ++         +           N     + ++  L   G+ D  F+Q +  Q   
Sbjct: 85  VLLIQAAKDIKVSRADVNAEVQKVRQANNLTDNKAWTDALQSAGLTDATFRQQVRDQLAV 144

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
               +          + E     +                 S      +      K   +
Sbjct: 145 QRKSEEIQQAAPPATDAEARLYYELHPESFQ----------SDARIVGREIVVNDKAKAE 194

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD--------LHPQFQNLLKK-SQN 255
           A   ++R   D  +L +  S       G    L            L  +        +  
Sbjct: 195 ALLKQVRGGADFAQLARQNSSEFAERGGALGPLENGRPRPVARVALPDEVAAAAFALTGG 254

Query: 256 NTTNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             T+   +      + +              KA         K +    +++  L  +  
Sbjct: 255 GVTDVIASGGKFYIVKVEQYLPPQTKPFADAKADAVTAVNRQKKDAAVEQWLTNLERDVK 314

Query: 314 IH 315
           I 
Sbjct: 315 IE 316



 Score = 43.9 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 24/289 (8%), Positives = 62/289 (21%), Gaps = 56/289 (19%)

Query: 34  KSWAMSSRIRTTINGEVITDGD-------------ISKRIALLKLQKINGELEKIAVQEL 80
            +W   +    ++ G+ I   D             +  ++     Q IN  L+   VQ+L
Sbjct: 320 PAWKTENPTVASVAGQNIPYSDVVAQVVQNQQVTNLVSQMGDQAAQLINSILKPQIVQQL 379

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I      + +++  +              A          +                   
Sbjct: 380 IQSYAAPKIVQQKNLALTGTRQELAAGLVAYGARNVQVTDADIQKFYLQNP--------- 430

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
                      F         E     +       + +  +    +             +
Sbjct: 431 ---------QQFETPASATVSEASFADRDKALAFRQSWNGQGDFTAAATKAGATVSERGE 481

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP 260
                 E+   L +        A  +                           + + ++ 
Sbjct: 482 VRPSTPETPGTLAQPVEAAVFTAKTL-----------------------RPAGEGSLSDV 518

Query: 261 YVTQKGVEYIAICD--KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
                      + D  +  +    A++  +  Q    K E+    Y+ +
Sbjct: 519 VKVGNRYVVAYVTDLQRASVQPLAAVRDQIRQQLLTQKREEAGQAYLAQ 567


>gi|56477779|ref|YP_159368.1| putative peptidyl-prolyl cis-trans isomerase [Aromatoleum
           aromaticum EbN1]
 gi|56313822|emb|CAI08467.1| putative peptidyl-prolyl cis-trans isomerase [Aromatoleum
           aromaticum EbN1]
          Length = 236

 Score = 71.6 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/179 (11%), Positives = 47/179 (26%), Gaps = 4/179 (2%)

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
            ++    +++ +  L+    E          +            +         ++   Q
Sbjct: 38  EEAAVEKLLEREVKLEPVADEEIRRYFDANRQRFRSGALFEVRHILFDTTRDGSDRATAQ 97

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKKSQNNT 257
           K  +     R           + +        G    + E  + P+F    +        
Sbjct: 98  KAERALFHLRNNPEAFERVAAEESCCTSAKIGGALGQISEGAVVPEFWVALVNFGKAGLL 157

Query: 258 TNPYVTQKGVEYIAI--CDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                T+ G   + I      +     A++A +    T    +    +YV +L   A I
Sbjct: 158 PQLVETRFGHHIVMIDHLALGEALPFEAVQARIRDYLTGRLEQLTYQQYVAQLIGQAHI 216


>gi|254252159|ref|ZP_04945477.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa
           AUO158]
 gi|124894768|gb|EAY68648.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa
           AUO158]
          Length = 645

 Score = 71.6 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/273 (9%), Positives = 59/273 (21%), Gaps = 22/273 (8%)

Query: 53  DGDISKRIALLKLQ-KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
             D+ +   LL  Q     + ++     L ++ +    I  +                 R
Sbjct: 133 SIDVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIISSAFTPKSLAQRLSELAAQQR 192

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ---------SIWPDVVKN--DFMLKYGNLE 160
                    S +  K    D     Y             +    +V +           +
Sbjct: 193 EVQSLVLKTSDYAAKVQPTDAQLAAYYDAHKQSFATPATATIQYLVYSPAAAAASAQPTD 252

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            +I             E  +R     I      +          AE+    +    ++  
Sbjct: 253 ADIKKFYDDNPTHFRTEAQVRVSHIFIAAASSASAADKAAAKAKAEQLLAEVKAHPDQFA 312

Query: 221 KFA-----SKIHDVSIGKAQYLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAI 272
           + A             G   ++                   Q   +    +  G   +  
Sbjct: 313 QIAEKNSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFALKQGEVSGVVESDLGFHILKA 372

Query: 273 CDKRDL--GGEIALKAYLSAQNTPTKIEKHEAE 303
            + +         +K  ++A        K  ++
Sbjct: 373 TEVKPAVLKPFAEVKDQIAADLKQQYAAKAFSD 405



 Score = 47.0 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/211 (9%), Positives = 55/211 (26%), Gaps = 15/211 (7%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN-------------GELE 73
            V I  ++ +   S     +NG  IT  +          Q                 E  
Sbjct: 26  FVGIQGFRGFFDDSANVAAVNGHKITRVEFDAAFRQQIDQARQALGGQFDIKMFDTPEHR 85

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV--QHARNTGLSAEDFSSFLDKQGIGD 131
           K  +  LI + +   E ++  +T   N V    +      +              Q +  
Sbjct: 86  KQVLDGLIQQRVLADETQRLHLTASDNAVREALMSDPMIASLKKPDGSIDVERYAQLLSF 145

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                    + +   +          +      +  Q++  +  ++  +++++    D  
Sbjct: 146 QGMTPEQYQERVRYSLALQQIPASIISSAFTPKSLAQRLSELAAQQREVQSLVLKTSDYA 205

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            + Q    +     +  +           ++
Sbjct: 206 AKVQPTDAQLAAYYDAHKQSFATPATATIQY 236


>gi|261868689|ref|YP_003256611.1| peptidyl-prolyl cis-trans isomerase D [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261414021|gb|ACX83392.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
           [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 615

 Score = 71.6 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/392 (9%), Positives = 105/392 (26%), Gaps = 81/392 (20%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKR-- 59
             K+  + +++       F+ + F I  +  Y    + S     +NGE I+      +  
Sbjct: 3   MEKLHGASNNWASKFLFGFITVTFVISSMAGYLYSRIDSS-AAKVNGEEISQQAFQNQYN 61

Query: 60  ----------------IALLKLQKINGELEKIAVQELI--------VETLKKQEIEKSGI 95
                           +A LK Q ++  +++  +++ +         E +K++ +     
Sbjct: 62  IASQNLSPQEADSPTVVANLKRQVLSSLIDQELLRQYVKDLKLGVSDERIKQEIVTTPSF 121

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLD-------------------KQGIGDNHFKQ 136
             +    N  + Q  ++ G+SAE ++ ++                               
Sbjct: 122 QNNGKFDNVLYQQLLQSNGISAETYAGYVREALHLEQLQSGLGITAFTVPVQQEALTKLF 181

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
           +         +   D + K      EI A     K        ++     +    ++   
Sbjct: 182 FQRRDVRLATLSLADEIAKQTVSAEEIQAYYDAHKADFTLPESVKVQYLDLSGANMEKNI 241

Query: 197 FV-------------------------------QKRIKDAEESRLRLPKDCNKLEKFASK 225
            +                               +++ +D  +            +  +  
Sbjct: 242 NISNVEIAQYYQDNKSQFMTQGQQRLAHIEVKTEQQAQDLYQQLQNGADFATLAKNHSID 301

Query: 226 I-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG--GE 281
                  G   ++   +    F++          + P         I + +++D      
Sbjct: 302 PISAEKGGDLSWVSAGEFPKVFEDAANALDVGKFSQPVKLDNSYHIILVEERKDSAVLPL 361

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             ++  + AQ     +        K++   A 
Sbjct: 362 ERVRPQIVAQIRQNLVNNQFFSVEKRVAEKAF 393


>gi|148828172|ref|YP_001292925.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           PittGG]
 gi|148719414|gb|ABR00542.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           PittGG]
          Length = 622

 Score = 71.6 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/395 (11%), Positives = 110/395 (27%), Gaps = 84/395 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           +  K+    +  I       + + F +  +  Y  ++ +      +NGEVI+  D   R 
Sbjct: 2   LIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYL-FSSNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  AL---LKLQKINGE-------------LEKIAVQELIV-----------------ETLKK 87
                ++ Q+                 L +  V  +I                  E +K+
Sbjct: 61  NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
             +            N  + +  +   L+++ ++S L      +         + I P  
Sbjct: 121 AIVTDPNFQVKGKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVPAQ 180

Query: 148 VK-------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL---- 184
           VK                    D M K    + EI    +  +   V+   ++       
Sbjct: 181 VKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYIDLS 240

Query: 185 ------------------------FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
                                     +  +    Q   ++  K A E   +     +  +
Sbjct: 241 ADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQFANEQDAKVAYEELQKGANFADVAK 300

Query: 221 KFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL 278
             +  KI   + G   ++ E++L   F++          + P         + + +++  
Sbjct: 301 AKSLDKISGENGGDLGWVNENELPKAFEDAAAALQVGQYSQPINVDGNYHIVLVQERK-A 359

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                +KA ++     + +E       K+    A 
Sbjct: 360 QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAF 394


>gi|225848231|ref|YP_002728394.1| SurA N- domain family [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644703|gb|ACN99753.1| SurA N- domain family [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 285

 Score = 71.6 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 100/303 (33%), Gaps = 25/303 (8%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
               FVL +   V   + + + +  +I   +NGE +   D+       K++       K 
Sbjct: 6   FIFIFVLTVLGFVKAENLEGYQLFDKIVLVVNGEPVLKSDVEFAKEWYKIKDD-----KQ 60

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR-NTGLSAEDFSSFLDKQGIGDNHF 134
           A +++I   L  Q+  K GI+     V+   +  A+ N     E F   L+K GI     
Sbjct: 61  AQEKIIDSILLSQQARKLGISVSPKEVDNALLSIAKANNIQDLETFKKELEKNGISYTKL 120

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
           K+++    +    +            +E                 ++ +          +
Sbjct: 121 KEFITRDLVSNKFLHFYLRDYITKGIVE------------GSVEDVKKIRMIYISKDRPD 168

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ 254
              V K     +E   +        +    K    + G    + + DL  +    +   +
Sbjct: 169 YESVVKL---LKEKLNKNNFSEYAAKYSDDKFTAENAGLLGEVKKGDLAEELDKEVFSRK 225

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                   T++G  +I I   ++    I  +          K+++    Y+KKLR  A+I
Sbjct: 226 EGDIFQVDTKEGTYFIYIE--KEEKKLIPKENLTEKDM--EKLKREYDMYLKKLREKAVI 281

Query: 315 HYY 317
             +
Sbjct: 282 QRF 284


>gi|6006449|emb|CAB56780.1| p13 protein [Dictyostelium discoideum]
          Length = 91

 Score = 71.6 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 4/93 (4%)

Query: 225 KIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN--TTNPYVTQKGVEYIAICDKRDLGGEI 282
                  G   +   ++    F   + K +       P  TQ G   I + D R +  E 
Sbjct: 1   GDPRQRGGDLGWAPATNYVQPFAEAVTKLKKGQLVDKPVQTQFGWHVIQVDDTRPV--EF 58

Query: 283 ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                +  Q      ++  A Y K+LR  A I 
Sbjct: 59  PAMDQVRPQLEEMLRQQTLANYQKQLREQAKIQ 91


>gi|328957038|ref|YP_004374424.1| foldase protein PrsA [Carnobacterium sp. 17-4]
 gi|328673362|gb|AEB29408.1| foldase protein PrsA [Carnobacterium sp. 17-4]
          Length = 333

 Score = 71.6 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/297 (9%), Positives = 74/297 (24%), Gaps = 35/297 (11%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELI 81
           L++     +        S     +     IT+ +  + +           +    +Q+LI
Sbjct: 4   LLLATATILAGLTIAGCSDSTVASSTAGKITEDEFYEAMK--------ETVGTSMLQQLI 55

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
           +E +              +       +            +   +   +   +  +     
Sbjct: 56  IEDVLTDLYGDKVTDEVVDKQYATEEETY--------GGAEAFEYIMLQQGYTAENYKDT 107

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
                +++     K    E EI A      +  V       +L              ++ 
Sbjct: 108 IRLNLLIEEAVKDKTEFTEEEIQA----AYDAYVPPVTAAHIL-----------VEDEET 152

Query: 202 IKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT-N 259
            KD                + +       + G+  +     +    +      +   T  
Sbjct: 153 AKDLITQINDGADFAELATENSVDTATAPNGGEITFSSGEMVPEFEEAAYALEEGEMTTE 212

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI--EKHEAEYVKKLRSNAII 314
           P  ++ G   I + +K + G        +  Q    K+       E +  +  +A I
Sbjct: 213 PVASEYGFHVIKMIEKPEKGTLEEETDTIKDQLLTAKLADSAAIQEVISGIMQDANI 269


>gi|167849967|ref|ZP_02475475.1| putative rotamase [Burkholderia pseudomallei B7210]
          Length = 156

 Score = 71.6 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 3/104 (2%)

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN-NTTNPYVTQK 265
              ++         +F++     S G   ++ +  L    +N +        + P     
Sbjct: 48  NQLIQGASFGELAMRFSTDASRDSGGDIGWVAQGVLSDVARNEIDAIVKSGFSMPIRGSN 107

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
           G   + + DKRD+         +  Q            ++ +LR
Sbjct: 108 GYHLLYVRDKRDIVA--PSLDQIREQLIELARVDKFERHLCELR 149


>gi|217958629|ref|YP_002337177.1| peptidylprolyl isomerase [Bacillus cereus AH187]
 gi|229137839|ref|ZP_04266438.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST26]
 gi|217067290|gb|ACJ81540.1| peptidylprolyl isomerase PrsA1 [Bacillus cereus AH187]
 gi|228645496|gb|EEL01729.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST26]
          Length = 287

 Score = 71.6 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/305 (11%), Positives = 87/305 (28%), Gaps = 46/305 (15%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S +I T+  G+ IT  +  +++          +  K 
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKIVTSKAGD-ITKEEFYEQMKT--------QAGKQ 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +++E +  +  +      D                   + F + L +QGI +   K
Sbjct: 52  VLNNMVMEKVLIKNYKVEDKEVDKKFD--------EMKKQYGDQFDTLLKQQGIKEETLK 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +  Q      ++     K      +       +                         
Sbjct: 104 TGVRAQLAQEKAIEKTITDKELKDNYKPEIKASHILVKD--------------------- 142

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              +   K  +E   +        ++++         G   +     +  +F+    K  
Sbjct: 143 ---EATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGKMVKEFEEAAYKLK 199

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRS 310
           ++  + P  +Q G   I + D ++        KA +  +    K +      + + K   
Sbjct: 200 KDEVSEPVKSQFGYHIIKVTDIKEPEKSFEQSKADIKKEIVQKKAQDGAFMNDLMMKEIK 259

Query: 311 NAIIH 315
            A + 
Sbjct: 260 KADVK 264


>gi|56416400|ref|YP_153474.1| hypothetical protein AM041 [Anaplasma marginale str. St. Maries]
 gi|254994626|ref|ZP_05276816.1| hypothetical protein AmarM_00174 [Anaplasma marginale str.
           Mississippi]
 gi|56387632|gb|AAV86219.1| hypothetical protein AM041 [Anaplasma marginale str. St. Maries]
          Length = 401

 Score = 71.6 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 94/280 (33%), Gaps = 14/280 (5%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA---LLKLQKINGEL 72
           +  Y +      V + S+  +A S RI+  ++G+ IT  D+S+R             G  
Sbjct: 1   MLRYLLCCCALCVILASHHCYASSVRIKAVVDGKAITSLDVSRRTKANAFFYKTAHAGSD 60

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE-DFSSFLDKQGIGD 131
           +   +Q L+ E++ + E ++ GI+     +     +     G+         + + G+  
Sbjct: 61  QGEVLQSLVDESVLELEAKELGISVGKRELEAEASKMFSVLGVCDGLSVGECVAQNGLDY 120

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
              + +L  + IW  ++           + ++     + K+  +   L    +F      
Sbjct: 121 KSVEDHLRSRVIWSKILATRVAPFLAVSDSDVENYVDEAKSAGLETVLDLEQVFVPFKAG 180

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
                 + +  K    +  ++     +   +A +              + L     +L+K
Sbjct: 181 NVLDSVLSELNKGV--ALDKIASRYREHAVYADRA-------VGVTASAFLPDVKISLVK 231

Query: 252 KSQNNTTNPYVTQKGVEYIAICDK-RDLGGEIALKAYLSA 290
                   P    +G   + + +K +   G +   A +  
Sbjct: 232 AKVGQVIGPIRIDRGYLVLKLLNKVKVSKGFLNSSASIKR 271


>gi|86130561|ref|ZP_01049161.1| peptidylprolyl isomerase [Dokdonia donghaensis MED134]
 gi|85819236|gb|EAQ40395.1| peptidylprolyl isomerase [Dokdonia donghaensis MED134]
          Length = 643

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/302 (10%), Positives = 79/302 (26%), Gaps = 53/302 (17%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK--RIALLKLQKING 70
           ++ L      + F  +             +   +N + +T  D  +     L  +     
Sbjct: 1   MRYLFIVCFFMPFVSLG---------QQEVLLKVNNDEVTTADFVRVYEKNLALINDTEE 51

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
              +  +   I   LK QE  + G+   ++          +       D           
Sbjct: 52  NSPEQYLDLFIDYKLKVQEAYRKGLHNKASYKKEIASYRTQLGKDYLNDVQ--------- 102

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                       +   +V+  +      L                       ++   PD 
Sbjct: 103 ------------VTDKLVEEAYNRTKNELRA------------------RHILVRVRPDA 132

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD-VSIGKAQYLLESDLHPQFQNL 249
             ++      ++ +A +  +          K++       + G   +     +   F+N 
Sbjct: 133 LPKDTLAAFNKLLEARKRIVAGEDFAFIASKYSEDPSAKQNGGDLGWFKAFKMVYPFENA 192

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
                 N  + P+ T  G   +     R   G + + A++              E +K++
Sbjct: 193 AYTTKVNEVSQPFRTSFGYHIVQPTASRIAQGSVQV-AHIMIALKQKDSSIIAEEKIKEV 251

Query: 309 RS 310
           R+
Sbjct: 252 RA 253



 Score = 58.9 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 41/139 (29%), Gaps = 5/139 (3%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLE 239
           +     I   +  +    +++IK+      +          ++         G      +
Sbjct: 227 QVAHIMIALKQKDSSIIAEEKIKEVRALLAKGAAFETLALNYSDDKNSAKKGGVLSAFEK 286

Query: 240 SDLHP---QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN-TPT 295
             L     +      K   + + P+ T+ G   + +  K  +     +K  L+ +    +
Sbjct: 287 GQLSSSKFENTAFDLKKVGDISEPFKTKFGWHILKLIKKNPVLSFEKMKPSLTKRVTKDS 346

Query: 296 KIEKHEAEYVKKLRSNAII 314
           +      E   +LR    I
Sbjct: 347 RARVLSQELNTRLREQYKI 365


>gi|187929591|ref|YP_001900078.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
           12J]
 gi|309781629|ref|ZP_07676363.1| peptidyl-prolyl cis-trans isomerase [Ralstonia sp. 5_7_47FAA]
 gi|187726481|gb|ACD27646.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
           12J]
 gi|308919604|gb|EFP65267.1| peptidyl-prolyl cis-trans isomerase [Ralstonia sp. 5_7_47FAA]
          Length = 261

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/173 (11%), Positives = 50/173 (28%), Gaps = 4/173 (2%)

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           +++ +  +            +         + +  + +     ++      +QK  +  +
Sbjct: 76  LLERELAVPEPTRADCERYYQNHPARFRRNDIVYASHILFAVTDRAPVALLLQKAQQTLQ 135

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN--LLKKSQNNTTNPYVTQ 264
           +             + ++       G    LL  D  P+F+                 T+
Sbjct: 136 QVLEAPETFEAVAREVSNCPSAGVGGSLGQLLRGDSVPEFERVLFDSTETGVLPRIVKTR 195

Query: 265 KGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            G   + I  +   D     A++A ++         K   +YV  L S A + 
Sbjct: 196 FGFHVVRIEHRVAGDTVPFDAVEAEIAQYLEARVRHKATQQYVSILASQAQVE 248


>gi|154148381|ref|YP_001406634.1| foldase protein PrsA [Campylobacter hominis ATCC BAA-381]
 gi|153804390|gb|ABS51397.1| foldase protein PrsA [Campylobacter hominis ATCC BAA-381]
          Length = 275

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/298 (14%), Positives = 89/298 (29%), Gaps = 39/298 (13%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDIS--KRIALLKLQKINGELEKIAVQELIV 82
           F I  +    + ++++ +  T     ITD DI+       +    IN E +K  ++ LI 
Sbjct: 4   FLISTLSLVAAISLNADVLATAGDIKITDEDITPFLEQNHMNGIDINDEQKKALLENLIK 63

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
             L  +E + SG+  +                                       +A   
Sbjct: 64  YKLLVKEAKNSGVENELEYKKRL-------------------------------DIAADG 92

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           I   + +++   K    + E     ++     V    I      + + K       +   
Sbjct: 93  IAFGLWQDNEFKKVNVSDDEAKKFYEENNASFVIPEQISASHILVKEEKEAKNIISKLSK 152

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-P 260
              E+      K  ++  K        + G   +  +  +   F+  +    +   T  P
Sbjct: 153 LKGEKLSKEFAKIASE--KSIDNGTKQNGGALGFFQKGQMVEPFEKAVFGLKKGELTKQP 210

Query: 261 YVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             TQ G   I   D++        ++K  +       K +K   E  + L   A + +
Sbjct: 211 VKTQFGYHIILKTDEKKASTLPFESVKNAIINNIKGQKFQKQIDEKAEALYKAANVQF 268


>gi|57239486|ref|YP_180622.1| hypothetical protein Erum7600 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579465|ref|YP_197677.1| hypothetical protein ERWE_CDS_08010 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161565|emb|CAH58493.1| putative membrane protein [Ehrlichia ruminantium str. Welgevonden]
 gi|58418091|emb|CAI27295.1| Hypothetical protein ERWE_CDS_08010 [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 425

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 110/306 (35%), Gaps = 22/306 (7%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--INGELEKIAVQE 79
           + +F ++      +   + ++   +NGE+I+  D+ + IA+ K      +   + I +  
Sbjct: 31  IGLFLLIFAFYCSNAFANVKMVAMVNGELISSLDLERYIAISKFFYHVDSDVAKDIELDS 90

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG-----LSAEDFSSFLDKQGIGDNHF 134
           LI E + KQE EK  +      +     Q     G         DF S+ ++QG+  +  
Sbjct: 91  LIDEYIWKQEAEKLKVVVSEQEILDAVNQLFVMKGSNHKENHNNDFKSYTEQQGLDYDML 150

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIP--ANKQKMKNITVREYLIRTVLFSIPDNKL 192
            Q++  + +W  ++    +        EI    +     N       I+ ++  +  +  
Sbjct: 151 IQHVKSKLLWNKILMLKVVPYISVSNKEILDSQDTMLSPNGLNIFVHIQEIVLPVGLSDN 210

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
                ++          ++   +    E+ +     +++     +L + L       L  
Sbjct: 211 NVTDVIRSLHDGISIDNIKKRVEGLLFEETS-----INLKDVDIVLANQL-------LNA 258

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-YLSAQNTPTKIEKHEAEYVKKLRSN 311
             N+   P  T+ G   I + ++ ++  E A  +  L       +  K   + +  L++ 
Sbjct: 259 KVNDVIGPIKTEYGNLIIKLLNRFEINREFANSSVNLQQMYLDVQESKKYVDQISLLKTK 318

Query: 312 AIIHYY 317
           A    +
Sbjct: 319 AKCENF 324


>gi|319775064|ref|YP_004137552.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           F3047]
 gi|317449655|emb|CBY85861.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           F3047]
          Length = 622

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/395 (11%), Positives = 110/395 (27%), Gaps = 84/395 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           +  K+    +  I       + + F +  +  Y  ++ +      +NGEVI+  D   R 
Sbjct: 2   LIEKMHNLTNSKISKFILGLITVSFLVGGMSGYL-FSSNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  AL---LKLQKINGE-------------LEKIAVQELIV-----------------ETLKK 87
                ++ Q+                 L +  V  +I                  E +K+
Sbjct: 61  NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
             +            N  + +  +   L+++ ++S L      +         + I P  
Sbjct: 121 AIVTDPNFQVKGKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVPAQ 180

Query: 148 VK-------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL---- 184
           VK                    D M K    + EI    +  +   V+   ++       
Sbjct: 181 VKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYIDLS 240

Query: 185 ------------------------FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
                                     +  +    Q   ++  K A E   +     +  +
Sbjct: 241 ADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQFANEQDAKVAYEELQKGANFADVAK 300

Query: 221 KFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL 278
             +  KI   + G   ++ E++L   F++          + P         + + +++  
Sbjct: 301 AKSLDKISGENGGDLGWVNENELPKAFEDAAAALQVGQYSQPINVDGNYHIVLVQERK-A 359

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                +KA ++     + +E       K+    A 
Sbjct: 360 QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAF 394


>gi|145638176|ref|ZP_01793786.1| lipoprotein signal peptidase [Haemophilus influenzae PittII]
 gi|145272505|gb|EDK12412.1| lipoprotein signal peptidase [Haemophilus influenzae PittII]
 gi|309751332|gb|ADO81316.1| Putative peptidyl-prolyl cis-trans isomerase [Haemophilus
           influenzae R2866]
          Length = 622

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/395 (11%), Positives = 111/395 (28%), Gaps = 84/395 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           +  K+    +  I       + + F +  +  Y  ++ +      +NGEVI+  D   R 
Sbjct: 2   LIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYL-FSSNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  AL---LKLQKINGE-------------LEKIAVQELIVETLKKQEIE------------- 91
                ++ Q+                 L +  V  +I + L +Q ++             
Sbjct: 61  NQEFEIRAQREGEAFMGQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 92  ----KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
                          N  + +  +   L+++ ++S L      +         + I P  
Sbjct: 121 AIVTDPNFQVKGKFDNSVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVPAQ 180

Query: 148 VK-------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
           VK                    D M K    + EI    +  +   V+   ++     + 
Sbjct: 181 VKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYIDLS 240

Query: 189 DNKLQNQGFV----------------------------QKRIKDAEESRLRLPKDCNKLE 220
            + +     V                            ++  K A E   +     +  +
Sbjct: 241 ADNISKNLQVTDIEIAQYYQDNKAQFMTQRLAHIQFANEQDAKMAYEELQKGANFADVAK 300

Query: 221 KFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL 278
             +  KI   + G   ++  ++L   F++          + P         + + +++  
Sbjct: 301 TKSLDKISGENGGDLGWVNANELPKAFEDAAAALQVGQYSQPINVDGNYHIVLVQERK-A 359

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                +KA ++     + +E       K+    A 
Sbjct: 360 QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAF 394


>gi|115351959|ref|YP_773798.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria AMMD]
 gi|115281947|gb|ABI87464.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria AMMD]
          Length = 644

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/273 (8%), Positives = 60/273 (21%), Gaps = 22/273 (8%)

Query: 53  DGDISKRIALLKLQ-KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
             D+ +   LL  Q     + ++     L ++ +    +  +                 R
Sbjct: 133 SIDVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVASAFTPKGPAQRLSELAAQQR 192

Query: 112 NTGLSAEDFSSFLDKQGIGDNH---FKQYLAIQSIWPDVVKNDF--------MLKYGNLE 160
                 +  S +  K    D     +          P+     +               +
Sbjct: 193 EVQALVQKTSDYAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVYSPAAAAASAQPND 252

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            +I             E  +R     I      +          AE+    +    ++  
Sbjct: 253 ADIKKFYDDNPTHFRSEAQVRVSHIFIAAASDASAADKAAAKAKAEQLLADVKAHPDQFA 312

Query: 221 KFA-----SKIHDVSIGKAQYLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAI 272
           + A             G   ++                   Q + +    +  G   +  
Sbjct: 313 QIAQKNSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFALKQGDVSGVVQSDLGFHILKA 372

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAE 303
            + +   +     +K  ++ Q       K   +
Sbjct: 373 TEVKPSVVKPFADVKDQIAVQLKQQYAAKAFTD 405



 Score = 44.3 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/211 (9%), Positives = 52/211 (24%), Gaps = 15/211 (7%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN-------------GELE 73
            V I  ++ +   S     ING  IT  +          Q                 E  
Sbjct: 26  FVGIQGFRGFFDDSANVAAINGHKITRVEFDGAFRQQIDQARQALGGQFDIKAFDTPEHR 85

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV--QHARNTGLSAEDFSSFLDKQGIGD 131
           K  +  LI + +   E ++  +T   N V    +      +              Q +  
Sbjct: 86  KQVLDGLIQQRVLADETQRLHLTASDNAVRDALMSDPMIASLKKPDGSIDVERYAQLLSF 145

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                    + +   +                    Q++  +  ++  ++ ++    D  
Sbjct: 146 QGMTPEQYQERVRYSLALQQIPASIVASAFTPKGPAQRLSELAAQQREVQALVQKTSDYA 205

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            + Q    +     +  +           ++
Sbjct: 206 AKVQPTDAQLTAYYDAHKQSFATPETATIQY 236


>gi|330689730|pdb|3RFW|A Chain A, The Virulence Factor Peb4 And The Periplasmic Protein
           Cj1289 Are Two Structurally-Related Sura-Like Chaperones
           In The Human Pathogen Campylobacter Jejuni
          Length = 252

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 86/279 (30%), Gaps = 35/279 (12%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             T+NG+ I+D ++S+  A +   +    L     + LI + + +  I +     +    
Sbjct: 3   VATVNGKSISDTEVSEFFAPMLRGQDFKTLPDNQKKALIQQYIMQDLILQDAKKQNLEKD 62

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                           +   A  +I  +V +   +        +
Sbjct: 63  P---------------------------LYTKELDRAKDAILVNVYQEKILNTIKIDAAK 95

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           + A   + K+  V+   ++     +   K       + +    +E   +  +     ++ 
Sbjct: 96  VKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGKELDAKFSE---LAKEK 152

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNN--TTNPYVTQKGVEYIAICD--KRD 277
           +         G+  +  +S +   F +     +N   TT P  T  G   I   +   + 
Sbjct: 153 SIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTNFGYHVILKENSQAKG 212

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                 +K  +       + +K   +  + L ++A + Y
Sbjct: 213 QIKFDEVKQGIENGLKFEEFKKVINQKGQDLLNSAKVEY 251


>gi|153005187|ref|YP_001379512.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152028760|gb|ABS26528.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 288

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/181 (9%), Positives = 54/181 (29%), Gaps = 5/181 (2%)

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
             + +  + +  +   +    ++       +   +  R   +  V F   D + + +   
Sbjct: 96  RREILAAEYLDREL-AQADREDLLRERYAARKDQLARRRIHVAHVAFLARDGEPRAKAAA 154

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHP-QFQNLLKKSQNN 256
           Q +   A              ++ +         G    LLE ++    F+     +   
Sbjct: 155 QSKASRAYARLAGGDAFEAVAKEMSEDPVTGAKGGDLGPLLEGEVDQGFFEAAAALTAGE 214

Query: 257 TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + P  T  G   +   ++  +         + +        + + + +++LR +  +  
Sbjct: 215 FSKPIETPYGFHVVKALER--VETVTPSFDDVRSALAAEARRETQVKLLERLREDVSVRV 272

Query: 317 Y 317
           Y
Sbjct: 273 Y 273


>gi|212696251|ref|ZP_03304379.1| hypothetical protein ANHYDRO_00787 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676880|gb|EEB36487.1| hypothetical protein ANHYDRO_00787 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 248

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/287 (10%), Positives = 79/287 (27%), Gaps = 46/287 (16%)

Query: 36  WAMSSRIRTTINGEVITDGDISKRIALLK--LQKINGELEKIAVQELIVETLKKQEIEKS 93
               + I   +NG+ I+  D+   I  ++   Q +N +       EL+ + L   +  ++
Sbjct: 2   TEKQNEILAEVNGKKISQKDVVSFITQMQGGQQFLNPQGIHQIADELVNQELMYIDAIEN 61

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
            +  D    +                                  L  +++  +   +   
Sbjct: 62  KLDQDKEFTDQV-------------------------------KLTKENMLKNYAMHLLF 90

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                 + E+       K +  +    +     +      N+   +          ++  
Sbjct: 91  KDIKVSDDELKEYYDNNKEVIKQPKTYKASHILVDSEDEANKILEE----------IKAG 140

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAI 272
            +  K     S       G      +  +  +F+    K  +   +NP  +Q G   I +
Sbjct: 141 LEFEKAADKYSTDKASKGGDLGEFPQGAMVKEFEEALDKLDEGEISNPVKSQFGYHIIKL 200

Query: 273 CDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
               +        +K  +       K ++   E   K++    +  Y
Sbjct: 201 DHTHNAHLPEFNEIKDRIHDTLLMIKRQEKYLEKTNKIKEKVDVKKY 247


>gi|326563012|gb|EGE13287.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis 46P47B1]
          Length = 367

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/190 (10%), Positives = 58/190 (30%), Gaps = 8/190 (4%)

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI-RTVLFSIPDNK 191
                   ++    +++   + K  +                    +  R +L + P  +
Sbjct: 163 ERAWLENEEATIAKLLEQKVIAKSPDKASCQNYYHANQVEFVSMPIMTLRHILLACPPQE 222

Query: 192 LQNQGFVQKRIKDAEESRL----RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
            + +  ++K+ +   +       R         ++++       G+   L +    P+F+
Sbjct: 223 GEERIELKKQARQLIDRLNQSHNRDSDFIEFARRYSACPSKDDGGELGVLQKGSTVPEFE 282

Query: 248 NLLKKSQNNTT-NPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEY 304
           + +       + NP  T+ G+  I +  K++            +              +Y
Sbjct: 283 SAVFALPVGISINPIETRYGIHVIEVLQKQEGRQLSFEEAYPIIENHLKQQSFHHSLCDY 342

Query: 305 VKKLRSNAII 314
           + +L   A I
Sbjct: 343 LFELSQKADI 352


>gi|326569386|gb|EGE19446.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis BC8]
          Length = 614

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/393 (8%), Positives = 85/393 (21%), Gaps = 88/393 (22%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVIT----DGDISKRI 60
           +   L  +   L     LI    + + ++   A+       +  +V+       +++   
Sbjct: 1   MRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHAIQPNELIKVGNQVVDVATFQAEVNAER 60

Query: 61  ALLKLQ------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
             L  Q           L+++ ++ L  + L + +    G+T     +      +     
Sbjct: 61  NALIEQGVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQHYEVFHD 120

Query: 115 LSAEDFSSFLDKQGIGDNHFK------------------------------------QYL 138
                   F                                                Q  
Sbjct: 121 NGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSKLIDLQLE 180

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ----- 193
           A +         D++ +    + +I A   + ++  ++   +      +  N L      
Sbjct: 181 AREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIELDPNVLSVGTPT 240

Query: 194 ----------------------------NQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
                                            Q R    +             +  +  
Sbjct: 241 EQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEALAKAHSDD 300

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKK----SQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
               + G       S        + +     S    + P  T  G     +     +  +
Sbjct: 301 PSGSNGGVIGSFNPSVFGEYAAGVERALSGLSVGQISQPVQTGFGYHIFKVT---KVSND 357

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
               A +  Q      +    +    L  +A I
Sbjct: 358 TPNIASMRDQLMDRAAKLKRDQAFADL--SAKI 388


>gi|319941683|ref|ZP_08016006.1| hypothetical protein HMPREF9464_01225 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804804|gb|EFW01666.1| hypothetical protein HMPREF9464_01225 [Sutterella wadsworthensis
           3_1_45B]
          Length = 260

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/278 (12%), Positives = 75/278 (26%), Gaps = 47/278 (16%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKIN--GELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NGE ++  +          Q      ELE      LI +T   QE +K+ I  +++
Sbjct: 25  AFKVNGETVSVAEQKAVYDRAVAQGQPAGPELESQVKNLLIQQTALLQEAKKAKIQQNAD 84

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                   Q +   + ++       +  
Sbjct: 85  VQRAI------------------------------DNARNQILIQGLAQDWAKKNPVSDA 114

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
               A +    +    EY +R +L              + + K+      +        +
Sbjct: 115 DLQKAYEADKASYGDTEYQVRHIL-----------VKTEDQAKNLISRLAKGADFGKLAQ 163

Query: 221 KFASK-IHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDKRD 277
           +F+    +    G   +++     P F               P  TQ G   + +  KR 
Sbjct: 164 EFSEDTANKAQGGLLGWVVPRSFVPAFGAAFSALKPGEVAQAPVRTQFGFHVVKLEAKRK 223

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                +  +   A        +   ++ ++L   A++ 
Sbjct: 224 AELYPSFDSQ-KAVIHNALANQKVQQHFQELIKRAVVK 260


>gi|88798823|ref|ZP_01114406.1| peptidyl-prolyl cis-trans isomerase D, putative [Reinekea sp.
           MED297]
 gi|88778586|gb|EAR09778.1| peptidyl-prolyl cis-trans isomerase D, putative [Reinekea sp.
           MED297]
          Length = 610

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/402 (11%), Positives = 106/402 (26%), Gaps = 90/402 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  S       +    ++I F +    S  S A +S    T+NGE I++ +  + +
Sbjct: 1   MLDALRNSARGTAGKVIVGLIVITFTLFGAESIISIAGNSAP-ATVNGEDISEVEYQRLL 59

Query: 61  ALLK-------------LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF-- 105
           +  +                 +  +    ++ LI + L+ Q  +K       + V     
Sbjct: 60  SRRQQELTSQFGAEAAAQLMNSSFVTDEIIESLISQELQMQLADKLAFDASEDQVVQSFA 119

Query: 106 -FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV---------------- 148
                  +   S + + + L   G     F      Q+                      
Sbjct: 120 DIPAFQIDGEFSQDRYLNVLAANGFNHQSFVAAQKEQAALAQFQSGVANSAFVVEKAIDR 179

Query: 149 -----------------KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                              +++ +    + E+    ++ +   + E  ++    +I  + 
Sbjct: 180 YANLIAQERSFQYKAFESQNYLAQVEVSDGELRDYYEQNQEQFLSEESVKVRYLTISLDS 239

Query: 192 LQNQGFVQKRIKDAEES-----------------------------------RLRLPKDC 216
           L  Q  V ++   +E                                       +  +  
Sbjct: 240 LAEQQSVTEQEIQSEYDSYVASLNEDNVREISHILFADGDDNQAEAQAALTRLNQGEEFA 299

Query: 217 NKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL--LKKSQNNTTNPYVTQKGVEYIAI- 272
           +   + +         G    L+      +F +           + P  TQ GV  I + 
Sbjct: 300 DLASELSDDPGSAEFGGSLGELIPDVYVDEFYDAALELSEVGQVSAPVETQYGVHLIRLD 359

Query: 273 -CDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             +  D      ++  L A     K ++       +L   A 
Sbjct: 360 ALNASDPEPLSEVRDELVADIRERKAQEELLLVESQLSDAAF 401


>gi|222109651|ref|YP_002551915.1| ppic-type peptidyl-prolyl cis-trans isomerase [Acidovorax ebreus
           TPSY]
 gi|221729095|gb|ACM31915.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax ebreus
           TPSY]
          Length = 278

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/167 (8%), Positives = 48/167 (28%), Gaps = 8/167 (4%)

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL----RL 212
              E            +  +   +R            +   +++R +             
Sbjct: 99  EPSEEACRRYHAAHPTLGGQGERVRMRHVLFAVTPGVDVKLLRQRAEGVLLDLRCADDDG 158

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKKSQNNTTNPYVTQKGVEYI 270
            +      ++++       G   +L   D  P+F  +    +     +    ++ G+  +
Sbjct: 159 ARFAAAAGQWSNCPSGQEGGDLGWLSAEDCAPEFAREVFGTQEVGVLSRLVHSRFGLHVV 218

Query: 271 AICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            +C+++         ++A ++             +Y++ L   A + 
Sbjct: 219 EVCERQPGQELPFEQVRASVALMLRQQAWVNALRQYLQLLAGEAEVE 265


>gi|121592871|ref|YP_984767.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42]
 gi|120604951|gb|ABM40691.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42]
          Length = 278

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/167 (8%), Positives = 48/167 (28%), Gaps = 8/167 (4%)

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL----RL 212
              E            +  +   +R            +   +++R +             
Sbjct: 99  EPSEEACRRYHAAHPTLGGQGERVRMRHVLFAVTPGVDVKLLRQRAEGVLLDLRCADDDG 158

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKKSQNNTTNPYVTQKGVEYI 270
            +      ++++       G   +L   D  P+F  +    +     +    ++ G+  +
Sbjct: 159 ARFAAAAGQWSNCPSGQEGGDLGWLSAEDCAPEFAREVFGTQEVGVLSRLVHSRFGLHVV 218

Query: 271 AICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            +C+++         ++A ++             +Y++ L   A + 
Sbjct: 219 EVCERQPGQELPFEQVRASVALMLRQQAWVNALRQYLQLLAGEAEVE 265


>gi|67458647|ref|YP_246271.1| hypothetical protein RF_0255 [Rickettsia felis URRWXCal2]
 gi|75536887|sp|Q4UMV2|Y255_RICFE RecName: Full=Uncharacterized protein RF_0255; Flags: Precursor
 gi|67004180|gb|AAY61106.1| unknown [Rickettsia felis URRWXCal2]
          Length = 296

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/304 (13%), Positives = 94/304 (30%), Gaps = 23/304 (7%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGEL 72
           +L+I   V      + A    I  ++N E IT  +   R  ++             + +L
Sbjct: 4   LLLIIITVFFAFNVAQASLPNIVASVNYEPITLNEFRARKKMIMALNNVESLTPAQDKQL 63

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
             +A++ LI E+L  Q             ++        +  +       +L  + +  +
Sbjct: 64  SDLAIKSLIDESLLFQYAGDRE--IPQEEIDNAIKSIEDHNKMPHGSLLQYLKSRSVNPD 121

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            F   +  + I  +++ +           EI           V   +         +   
Sbjct: 122 SFISQIKSELIKMNILSS-LSRSVQVSNKEIDVAILSSDQKDVEISMQVFTSKDGGNKAF 180

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
                ++ R+K   + +  L  +   ++    K+  +               +   +   
Sbjct: 181 TQMNNLKNRLKKCADVKKSLYDNFATMQIITDKLSKIEG------------VKQTIVKDL 228

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
           S +  +N +      E I +C K+ L        Y+    T  KI +   +  + +R  A
Sbjct: 229 SSDKASNVFEVNNKFEIILVCSKKILNVNEDENNYVVNFLTNKKISQKAQKMFENMRKKA 288

Query: 313 IIHY 316
           +I  
Sbjct: 289 VIKI 292


>gi|304311294|ref|YP_003810892.1| Peptidyl-prolyl cis-trans isomerase D [gamma proteobacterium HdN1]
 gi|301797027|emb|CBL45240.1| Peptidyl-prolyl cis-trans isomerase D [gamma proteobacterium HdN1]
          Length = 641

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/196 (9%), Positives = 53/196 (27%), Gaps = 6/196 (3%)

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGN-LEMEIPANKQKMKNITVRE 177
                 +      + ++    ++  +  + +  F        + EI     +M       
Sbjct: 207 SDFDLTEYYEAHQDDYQSEERVKVSYVHLSQEQFAANDEPISDAEIQDKLDEMIKDAEGN 266

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQY 236
                           +    +   + A              +  +       + G   Y
Sbjct: 267 ERRHAEHILFETGSKHSDAEARSLAEKALAELKAGKNFEELAKAQSEDFESAKNGGDLGY 326

Query: 237 LLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAIC--DKRDLGGEIALKAYLSAQN 292
                  P+F++ L   ++ N+ +    T+ G   I +   D+  L      + ++ A+ 
Sbjct: 327 AGRGVYAPEFEDALFALQAPNDISGVVKTEFGYHIIKLIGVDEPPLPDMQKSRDHIIAEI 386

Query: 293 TPTKIEKHEAEYVKKL 308
              +I  +    +  +
Sbjct: 387 RKERIASNIGTIIDDI 402



 Score = 37.3 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 27/277 (9%), Positives = 66/277 (23%), Gaps = 22/277 (7%)

Query: 47  NGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF 106
           N E I+D +I  ++  +       E           E +  +   K       +      
Sbjct: 243 NDEPISDAEIQDKLDEMIKDAEGNERRHA-------EHILFETGSKHSDAEARSLAEKAL 295

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF----MLKYGNLEME 162
            +            +   D +   +     Y       P+     F          +   
Sbjct: 296 AELKAGKNFEELAKAQSEDFESAKNGGDLGYAGRGVYAPEFEDALFALQAPNDISGVVKT 355

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                           L               +  +   I    +   R+  + N L + 
Sbjct: 356 EFGYHIIKLIGVDEPPLPDMQKSRDHIIAEIRKERIASNIGTIIDDIDRMAFESNDLSEI 415

Query: 223 ASKIHDV--------SIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICD 274
           +++              G      +  +     +     +   ++    + G   +   D
Sbjct: 416 SAQYDQKPEVSDWLTRKGGTGIFADPKVVEAAFSSEILQEQRNSDVIELEDGSLVVLRMD 475

Query: 275 KRDLGGE---IALKAYLSAQNTPTKIEKHEAEYVKKL 308
           + +   E     +K  +  Q   +K ++   E  K+L
Sbjct: 476 QHEPVRELSLDEVKDKVREQVIASKAQELATEQAKEL 512


>gi|296112972|ref|YP_003626910.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis RH4]
 gi|295920666|gb|ADG61017.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis RH4]
          Length = 307

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/190 (10%), Positives = 61/190 (32%), Gaps = 8/190 (4%)

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM-KNITVREYLIRTVLFSIPDNK 191
                   ++    +++   + K  +             + ++     +R +L + P  +
Sbjct: 103 ERAWLENEEATIAKLLEQQVIAKSPDKASCQNYYHANQVEFVSTPIMTLRHILLACPPQE 162

Query: 192 LQNQGFVQKRIKDAEESRL----RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
            + +  ++K+ +   +       R         ++++       G+   L +    P+F+
Sbjct: 163 GEERIELKKQARQLIDRLNQSHNRDSDFIEFARRYSACPSKDDGGELGVLQKGSTVPEFE 222

Query: 248 NLLKKSQNNTT-NPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEY 304
           + +       + NP  T+ G+  I +  K++            +              +Y
Sbjct: 223 SAVFALPVGISINPIETRYGIHVIEVLQKQEGRQLSFEEAYPIIENHLKQQSFHHSLCDY 282

Query: 305 VKKLRSNAII 314
           + +L   A I
Sbjct: 283 LFELSQKADI 292


>gi|261886000|ref|ZP_06010039.1| foldase protein PrsA [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 268

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 81/279 (29%), Gaps = 39/279 (13%)

Query: 26  CIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL--KLQKINGELEKIAVQELIVE 83
            I+ +    + ++++ +  T+NG+ ITD D++  +     +   +  +++K  +  +I  
Sbjct: 5   VILALSLAAAVSLNAAVLATVNGQNITDEDLAPVLGPHGSETSNVPADMKKNLLDRVIER 64

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            L   + +K GI  D                                           ++
Sbjct: 65  KLMLDQAKKDGIEKDDEFKK-------------------------------VVKELEDNV 93

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
             ++            E +     ++ K+  V     +     +   K            
Sbjct: 94  AINIWMKKQFDAIKVDEKKAKDFYEQNKDKFVVPAQAKAKHILVETEKEAADIIKSLNGL 153

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTT-NPY 261
                  +  +   +  K   K   V+ G+  +  ES +   F +      +   T  P 
Sbjct: 154 KGAALDKKFSEIAKE--KSIDKSSAVNGGELGWFGESQMVASFSKAAFGLKKGEITNKPV 211

Query: 262 VTQKGVEYIAICDKRDLGG--EIALKAYLSAQNTPTKIE 298
            ++ G   I   D +D         KA +  Q    +  
Sbjct: 212 KSEFGYHVILKEDMKDKSAVGFDKAKANIENQMKSEEFR 250


>gi|309973498|gb|ADO96699.1| Putative peptidyl-prolyl cis-trans isomerase [Haemophilus
           influenzae R2846]
          Length = 622

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/395 (11%), Positives = 110/395 (27%), Gaps = 84/395 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           +  K+    +  +       + + F +  +  Y  ++ +      +NGEVI+  D   R 
Sbjct: 2   LIEKMHNLTNSKVSKFILGLITVSFLVGGMSGYL-FSSNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  AL---LKLQKINGE-------------LEKIAVQELIV-----------------ETLKK 87
                ++ Q+                 L +  V  +I                  E +K+
Sbjct: 61  NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
             +            N  + +  +   L+++ ++S L      +         + I P  
Sbjct: 121 AIVTDPNFQVKGKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVPAQ 180

Query: 148 VK-------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL---- 184
           VK                    D M K    + EI    +  +   V+   ++       
Sbjct: 181 VKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYIDLS 240

Query: 185 ------------------------FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
                                     +  +    Q   ++  K A E   +     +  +
Sbjct: 241 ADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQFANEQDAKVAYEELQKGANFADVAK 300

Query: 221 KFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL 278
             +  KI   + G   ++ E++L   F++          + P         + + +++  
Sbjct: 301 AKSLDKISGENGGDLGWVNENELPKAFEDAAAALQVGQYSQPINVDGNYHIVLVQERK-A 359

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                +KA ++     + +E       K+    A 
Sbjct: 360 QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAF 394


>gi|326569504|gb|EGE19564.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis BC8]
          Length = 367

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/190 (10%), Positives = 61/190 (32%), Gaps = 8/190 (4%)

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM-KNITVREYLIRTVLFSIPDNK 191
                   ++    +++   + K  +             + ++     +R +L + P  +
Sbjct: 163 ERAWLENEEATIAKLLEQQVIAKSPDKASCQNYYHANQVEFVSTPIMTLRHILLACPPQE 222

Query: 192 LQNQGFVQKRIKDAEESRL----RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
            + +  ++K+ +   +       R         ++++       G+   L +    P+F+
Sbjct: 223 GEERIELKKQARQLIDRLNQSHNRDSDFIEFARRYSACPSKDDGGELGVLQKGSTVPEFE 282

Query: 248 NLLKKSQNNTT-NPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEY 304
           + +       + NP  T+ G+  I +  K++            +              +Y
Sbjct: 283 SAVFALPVGISINPIETRYGIHVIEVLQKQEGRQLSFEEAYPIIENHLKQQSFHHSLCDY 342

Query: 305 VKKLRSNAII 314
           + +L   A I
Sbjct: 343 LFELSQKADI 352


>gi|209963457|ref|YP_002296372.1| peptidyl-prolyl cis-trans isomerse, putative [Rhodospirillum
           centenum SW]
 gi|209956923|gb|ACI97559.1| peptidyl-prolyl cis-trans isomerse, putative [Rhodospirillum
           centenum SW]
          Length = 622

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/384 (8%), Positives = 93/384 (24%), Gaps = 81/384 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + ++   +I  +    ++  F +  I  +       R    +    IT  ++ +  
Sbjct: 1   MLQAIRSTAGSWIAKILFILLIASFAVWGIGDFTRGLG--RHVAEVGDVQITPQELDQEF 58

Query: 61  A-------------LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
                         L   Q     L +  +Q+++  TL     +  G+      V     
Sbjct: 59  RDEVTRLRRVMGADLTAEQARAFGLLERTLQQMVQRTLVSLAGQDKGLMPSDAMVADEIR 118

Query: 108 ----QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV--------------- 148
                H +      +   + L + G+ +    + +        ++               
Sbjct: 119 RVPVFHNQLGQFDPDLMRALLRQNGMTEQGLVEQVRADMARGQLLGSVSIGAILPTTLAE 178

Query: 149 -------KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
                  +             +P       ++  + +  R V ++ P+ +      +   
Sbjct: 179 TLFRFRNEKRVADLITVPATAMPEPAAPDASVLAQYHQDRAVRYTAPEYRSLTVAKLTAE 238

Query: 202 IKDAEESRLRLPKDCNKLEKFA----------------------SKIHDVSIG------- 232
               + +      +     + +                      S    V+ G       
Sbjct: 239 AIAGDITVSDADIEQAYSARASEFVAPERRAVVQAVLPDEAAAKSVADAVAGGASLEQAA 298

Query: 233 --------KAQYLLESD-LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIA 283
                       +     L    + +   SQ   + P  +  G   + +       G   
Sbjct: 299 KAAAAEAIDLGEVTRDQLLPELVEPVFGLSQGAISAPVESTLGWHVLTVRGI--TPGHER 356

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKK 307
             A +  Q      ++   + + +
Sbjct: 357 PLAEVRDQVVADLRKERALDRLYE 380


>gi|116329122|ref|YP_798842.1| hypothetical protein LBL_2545 [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116330269|ref|YP_799987.1| hypothetical protein LBJ_0534 [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116121866|gb|ABJ79909.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116123958|gb|ABJ75229.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 359

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/333 (12%), Positives = 99/333 (29%), Gaps = 25/333 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMS-SRIRTTINGEVITDGDISKR---- 59
           +   ++        +F    F  + + +    A S +R+  T+    I++ D+       
Sbjct: 12  IRPQMNSKQTYAKNFFFTGTFVFLFLQNPIQTAESLNRVIATVGTISISELDLDDASEKY 71

Query: 60  ---IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG-- 114
                 LK +     L    +  LI   +     E+  I  +   V+    +     G  
Sbjct: 72  TKLQKHLKHEDFRKSLRTRIIDFLIDRAIVDVVAEEESIQVNEQRVDAEIEKRMEVMGIT 131

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
              +   +     G+    +   L  Q     +++    +     E EI +   + ++  
Sbjct: 132 NRKQFEKAMETSSGMPFELWVTELPYQIKKGQLLQLKIAV-PPPSEQEIKSWYNQNRDKV 190

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI--- 231
             E   R +       +  +     +  K+  + R  +  D +     A    +      
Sbjct: 191 GFEIRYRII---SIAPENDSIQEENRLYKELSDIRKSVLADPSSFALIAGSPRNDPTLRS 247

Query: 232 --GKAQYLLESDLHPQFQNLL----KKSQNNTTNPYVTQKG-VEYIAICDKRDLGGEIAL 284
             G  +++   DL+   +              +  +  ++     + I  KR       L
Sbjct: 248 RRGMVEWISSFDLYKYSKITATIAAPLPNGGVSEVFRDERKRYSILKIEGKRPTPM-ENL 306

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           +  +       K E     ++K+ R+   I  +
Sbjct: 307 RGGIQNILYRDKEEDTFYRWLKESRAEIPIQIF 339


>gi|319762261|ref|YP_004126198.1| ppic-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
           denitrificans BC]
 gi|330825811|ref|YP_004389114.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
           denitrificans K601]
 gi|317116822|gb|ADU99310.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
           denitrificans BC]
 gi|329311183|gb|AEB85598.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
           denitrificans K601]
          Length = 261

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/303 (10%), Positives = 74/303 (24%), Gaps = 45/303 (14%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +  +     + +      +  I   +NG+ +               +    L++ 
Sbjct: 1   MKKQLLSGLVAAAMLGTMALPVAAQNI-AIVNGKAVPK-------------ERAEALKQQ 46

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
                  E   +    +         V                                 
Sbjct: 47  V------ERAGRPVTPEMENQIKEEVVAREIFMQEAQKRGLEGTADY---------KTQM 91

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +      +  ++  +                 + +     +EY    +L           
Sbjct: 92  ELARQTILIRELFVDFQKNNPVTDAEIQAEYDKFVAANAGKEYKASHIL----------- 140

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKS 253
              +   K    S  +  K  +  +K +         G   +       P+F + L+K  
Sbjct: 141 VAKEDEAKSIIASIKKGAKFEDIAKKQSKDPGSGARGGDLDWANPGSYVPEFTEALVKLE 200

Query: 254 QNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
           +   T  P  +Q G   I + D RD          +  Q      ++  A++ + LR+ A
Sbjct: 201 KGKMTQTPVKSQFGWHVIRLDDVRDAQL--PKLDEVKPQIAQQLQQQKLAKFQEDLRAKA 258

Query: 313 IIH 315
            + 
Sbjct: 259 KVE 261


>gi|160896759|ref|YP_001562341.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Delftia acidovorans
           SPH-1]
 gi|160362343|gb|ABX33956.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Delftia acidovorans
           SPH-1]
          Length = 311

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/311 (6%), Positives = 72/311 (23%), Gaps = 44/311 (14%)

Query: 16  LTTYFVLIIFC--IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK------LQK 67
           L   F+ +  C  ++ + +  +    + +  +  G  +T  D+      +       L  
Sbjct: 14  LRQGFLSLALCTPVLALAAQPAAGQPAAVLASGAGVSVTVDDLQADAQRIPPEVRAGLLA 73

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
               + +IA   L+   + ++   +                                   
Sbjct: 74  RPQNVSQIADNLLVRRVMAQKAQAQGL-------------------------------GN 102

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
                        + +    +                   + +       + +   +   
Sbjct: 103 NAVAQAALNVARDKILSDAWL-AKIDADNTPSAAAAEGQARNIYKAHPERFAVEEQVHVR 161

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQF 246
                      + + +                ++ +  K      G   +  +  + P+F
Sbjct: 162 HILIAGTDDAARAQAEKLVAELRGGADFAALAKERSADKGSAARGGDLGFFGKDKMVPEF 221

Query: 247 QNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAE 303
           +       +N  +    ++ G   + + D++         ++  L  +       +    
Sbjct: 222 EQAAFALKKNEISGAVQSKFGFHVLQLLDRKPAGQQSFSEVREALVKEVIEQAQAEGRVA 281

Query: 304 YVKKLRSNAII 314
               +R    +
Sbjct: 282 AANAIRKEFKV 292


>gi|222474770|ref|YP_002563185.1| hypothetical protein AMF_031 [Anaplasma marginale str. Florida]
 gi|255002737|ref|ZP_05277701.1| hypothetical protein AmarPR_00174 [Anaplasma marginale str. Puerto
           Rico]
 gi|255003870|ref|ZP_05278671.1| hypothetical protein AmarV_00169 [Anaplasma marginale str.
           Virginia]
 gi|222418906|gb|ACM48929.1| Conserved hypothetical protein [Anaplasma marginale str. Florida]
          Length = 401

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 90/280 (32%), Gaps = 14/280 (5%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA---LLKLQKINGEL 72
           +  Y +      V + S+   A S RI+  ++G+ IT  D+S+R             G  
Sbjct: 1   MLRYLLCCCALCVILASHHCCASSVRIKAVVDGKAITSLDVSRRTKANAFFYKTAHAGSD 60

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +   +Q L+ E++ + E ++ GI+     +     +     G+           Q   D+
Sbjct: 61  QGEVLQSLVDESVLELEAKELGISVGKRELEAEASKMFSVLGVCDGLSVGECVVQNGLDH 120

Query: 133 HFKQYL-AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
              +     + IW  ++           + ++     + K+  +   L    +F      
Sbjct: 121 KSVEDHLRSRVIWSKILATRVAPFLAVSDSDVENYVDEAKSAGLETVLDLEQVFVPFKAG 180

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
                 + +  K    +  ++     +   +A +              + L     +L+K
Sbjct: 181 NVLDSVLSELNKGV--ALDKIASRYREHAVYADRA-------VGVTASAFLPDVKISLVK 231

Query: 252 KSQNNTTNPYVTQKGVEYIAICDK-RDLGGEIALKAYLSA 290
                   P    +G   + + +K +   G +   A +  
Sbjct: 232 AKVGQVIGPIRIDRGYLVLKLLNKVKVSKGFLNSSASIKR 271


>gi|126445541|ref|YP_001062970.1| rotamase [Burkholderia pseudomallei 668]
 gi|126225032|gb|ABN88537.1| peptidylprolyl isomerase [Burkholderia pseudomallei 668]
          Length = 220

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 33/104 (31%), Gaps = 3/104 (2%)

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN-NTTNPYVTQK 265
              ++         +F++     S G   ++ +  L  + +N +        + P     
Sbjct: 112 NQLIQGASFGELAMRFSTDASRDSGGDIGWVAQGVLSDEARNEIDAIVKSGFSMPIRGSN 171

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
           G   + + DKRD+         +  Q            ++ +LR
Sbjct: 172 GYHLLYVRDKRDIVA--PSLDQIREQLIELARVDKFERHLCELR 213


>gi|120555992|ref|YP_960343.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinobacter
           aquaeolei VT8]
 gi|120325841|gb|ABM20156.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinobacter
           aquaeolei VT8]
          Length = 268

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 10/165 (6%), Positives = 46/165 (27%), Gaps = 6/165 (3%)

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFS---IPDNKLQNQGFVQKRIKDAEESRLRLP 213
              E +                ++          PD+  +     +   +          
Sbjct: 91  DPSEQDCERFYAANPGRFCSPTIMAVSHILLAAAPDDIEERMRQEEAGRQLLSALLDGRS 150

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAI 272
           +     +++++       G    + +     +F+  +   ++        ++ G   + +
Sbjct: 151 QFNELAKQYSACESRHQGGSLGQISKGQTVEEFERPVLSLNEGLHPELIESRYGWHIVRV 210

Query: 273 CDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             +   +L     +K  +    + +   +   +Y++ L +   + 
Sbjct: 211 DQRINGELLPYEHVKPQIRQYLSESVTRRAFRQYLQVLAAETGVE 255


>gi|326575303|gb|EGE25231.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis CO72]
          Length = 614

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/393 (8%), Positives = 85/393 (21%), Gaps = 88/393 (22%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVIT----DGDISKRI 60
           +   L  +   L     LI    + + ++   A+       +  +V+       +++   
Sbjct: 1   MRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHAIQPNELIKVGNQVVDVATFQAEVNAER 60

Query: 61  ALLKLQ------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
             L  Q           L+++ ++ L  + L + +    G+T     +      +     
Sbjct: 61  NALIEQGVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQHYEVFHD 120

Query: 115 LSAEDFSSFLDKQGIGDNHFK------------------------------------QYL 138
                   F                                                Q  
Sbjct: 121 NGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSKLIDLQLE 180

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ----- 193
           A +         D++ +    + +I A   + ++  ++   +      +  N L      
Sbjct: 181 AREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIELDPNVLSVGTPT 240

Query: 194 ----------------------------NQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
                                            Q R    +             +  +  
Sbjct: 241 EQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEALAKAHSDD 300

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKK----SQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
               + G       S        + +     S    + P  T  G     +     +  +
Sbjct: 301 PSGSNGGVIGSFNPSVFGEYAAGVEQALSGLSVGQISQPVQTGFGYHIFKVT---KVSND 357

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
               A +  Q      +    +    L  +A I
Sbjct: 358 TPNIASMRDQLMDRAAKLKRDQAFADL--SAKI 388


>gi|221210892|ref|ZP_03583872.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans CGD1]
 gi|221169848|gb|EEE02315.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans CGD1]
          Length = 306

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 69/283 (24%), Gaps = 55/283 (19%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           +NG  IT   I + + + K       L      +LI   L +Q   K         V   
Sbjct: 65  VNGVPITQAQIDEAVRVSKAPDTPA-LRTALKNQLIARELFRQAALKQHYDTKPQVVAAV 123

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
                                            A          +D +      + ++ A
Sbjct: 124 -------------------------------EQAKTLAMTQAYLSDQVKPVPVTDADVKA 152

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
               +           +V+     +  +      K          +        ++F+  
Sbjct: 153 RYDAIVATLGENEYKPSVIAVNDADTAKQIIARLK----------KGEDFAKLAQQFSKG 202

Query: 226 IHDVSIGKAQYL----------LESDLHPQFQNLLKKSQNNTT-NPYVTQKGVEYIAICD 274
                 G   ++           ++   P  + L+K  Q   T  P         +   D
Sbjct: 203 PAAAQGGALNWISFKTPIEAGHTQNWPQPLAEALVKLPQGGLTREPVQVGDAYWIVRADD 262

Query: 275 KRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           KR   +      K  L  Q     +EK  A+ V  L   A I 
Sbjct: 263 KRPTQVPTFDQAKDTLRQQLEQVAMEKATAQVVADLIRGARIQ 305


>gi|326561196|gb|EGE11561.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis 7169]
          Length = 367

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/190 (10%), Positives = 61/190 (32%), Gaps = 8/190 (4%)

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM-KNITVREYLIRTVLFSIPDNK 191
                   ++    +++   + K  +             + ++     +R +L + P  +
Sbjct: 163 ERAWLENEEATIAKLLEQQVIAKSPDKASCQNYYHANQVEFVSTPIMTLRHILLACPPQE 222

Query: 192 LQNQGFVQKRIKDAEESRL----RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
            + +  ++K+ +   +       R         ++++       G+   L +    P+F+
Sbjct: 223 GEERIELKKQARQLIDRLNQSHNRDSDFIEFARRYSACPSKDDGGELGVLQKGSTVPEFE 282

Query: 248 NLLKKSQNNTT-NPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEY 304
           + +       + NP  T+ G+  I +  K++            +              +Y
Sbjct: 283 SAVFALPVGISINPIETRYGIHVIEVLQKQEGRQLSFEEAYPIIENHLKQQSFHHSLCDY 342

Query: 305 VKKLRSNAII 314
           + +L   A I
Sbjct: 343 LFELSQKADI 352


>gi|293376704|ref|ZP_06622927.1| putative foldase protein PrsA [Turicibacter sanguinis PC909]
 gi|292644661|gb|EFF62748.1| putative foldase protein PrsA [Turicibacter sanguinis PC909]
          Length = 544

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/251 (10%), Positives = 71/251 (28%), Gaps = 9/251 (3%)

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
               ++  V++L  E +    +       D++ +   +    +      ++F        
Sbjct: 241 KTNEKEYTVEDLYNELVPAYGLSTGISILDTHLLEDKYSYDEKEVKALIDEFKVNWGSNY 300

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +  + I+       +       +    A            Y   T   S  
Sbjct: 301 YAYMAQYGLMNDEEIFN------YFKLAALQDAAFAAEYPITDEQLQAAYNEYTPNISAR 354

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
              ++++   +  I   + +  +  K     ++++      + G      +  +  +F+N
Sbjct: 355 HILVEDEETAKDLIAQLDAAEDKEAKFEELAKEYSKDGSASNGGDLGSFGKGQMVSEFEN 414

Query: 249 LLKK-SQNNTT-NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK-HEAEYV 305
                +    T  P  TQ G   I    + +      LK  L       +  +      +
Sbjct: 415 AAFALNVGEYTEEPVKTQYGYHVIYKYAEDEKPSFDDLKDELETTIRSEEYTQLKLEAIL 474

Query: 306 KKLRSNAIIHY 316
            K R+ A + +
Sbjct: 475 IKYRTEANVKF 485


>gi|291279447|ref|YP_003496282.1| peptidyl-prolyl cis-trans isomerse D [Deferribacter desulfuricans
           SSM1]
 gi|290754149|dbj|BAI80526.1| peptidyl-prolyl cis-trans isomerse D [Deferribacter desulfuricans
           SSM1]
          Length = 626

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/266 (12%), Positives = 91/266 (34%), Gaps = 11/266 (4%)

Query: 52  TDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
           T     + I    L +    L   +V   + E   K E      T   + +     +  +
Sbjct: 143 TPASFERSIKADLLVQKTKNLITQSVS--VNENEIKNEYIYRNKTAKISYIKLNSEKFKK 200

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
           +   + E+  ++ +K       ++    I+  +  +   DF  +    + EI     +  
Sbjct: 201 DVTYNDEELKAYFEKN---KEDYRVPEKIKLKYIKIDPKDFNKEIKVSDEEIEKYYLQHT 257

Query: 172 NITVREYL---IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
           +  + +        ++     N  +     +K+I++  +   +  K  +  +K++     
Sbjct: 258 DEFIEKEKVAAKHILIRVKDWNNKKEVAEAKKKIENILQKIKKGAKFEDLAKKYSDDPTA 317

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALK 285
            + G   Y  +  +  +F++++ K    + ++   T+ G   I +   +          K
Sbjct: 318 KNGGDLGYFTKGQMIKEFEDVVFKLKPGDISDIVKTKFGYHIIKVYGHKPEKKLTLDEAK 377

Query: 286 AYLSAQNTPTKIEKHEAEYVKKLRSN 311
             +  +    K + +  EYV  +  +
Sbjct: 378 PLIIKKLKTLKKDSYFKEYVLDIYRD 403



 Score = 45.8 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/316 (10%), Positives = 76/316 (24%), Gaps = 18/316 (5%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M       L+ F+ L+   F+  IF +  +   +    +  I   +N   I+  +  +  
Sbjct: 4   MFRNQKKILAFFLWLVIAAFIGTIFLVWGVGGNRGRQKNYAI--KVNDFEISFNEYQQEY 61

Query: 61  ALLKLQKING---------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
                   +           + K     +I + L   +  K G+      V         
Sbjct: 62  DKFSNTLKSLLGGEIPNTININKQVTDSIIEKYLLLDQANKLGVFVSDVEVFNEIKNIPS 121

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
                  D   +++   +       +         V K   ++       E     + + 
Sbjct: 122 FQTNGQFDAKRYVEILRLNGLTPASFERSIKADLLVQKTKNLITQSVSVNENEIKNEYIY 181

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
                +     +        +       K   +  +   R+P+   KL+       D + 
Sbjct: 182 RNKTAKISYIKLNSEKFKKDVTYNDEELKAYFEKNKEDYRVPEKI-KLKYIKIDPKDFN- 239

Query: 232 GKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ 291
                        + +    +  +              I + D  +       K  +   
Sbjct: 240 -----KEIKVSDEEIEKYYLQHTDEFIEKEKVAAKHILIRVKDWNNKKEVAEAKKKIENI 294

Query: 292 NTPTKIEKHEAEYVKK 307
               K      +  KK
Sbjct: 295 LQKIKKGAKFEDLAKK 310



 Score = 42.4 bits (97), Expect = 0.082,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 37/131 (28%), Gaps = 3/131 (2%)

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
            D        + K    +   +    +     +K +                       +
Sbjct: 490 NDYINDKSVELAKDNALSLIKKYNELQKIADSKKLSITTTPDFKRIDPIPDIGTNEELSK 549

Query: 248 NLLKKSQNNTTNPYVTQKGVEYIAICDKRDL---GGEIALKAYLSAQNTPTKIEKHEAEY 304
            +  K +     P+V    +  I + + +           K  + +     K ++    Y
Sbjct: 550 KIFNKGKGLLETPFVVGNNIFIIEVNNIKYPDFSKITEDEKKEIESYILSIKQDEALNSY 609

Query: 305 VKKLRSNAIIH 315
           ++KL++NA I 
Sbjct: 610 IEKLKNNAKIE 620


>gi|157691720|ref|YP_001486182.1| peptidylprolyl isomerase PrsA [Bacillus pumilus SAFR-032]
 gi|157680478|gb|ABV61622.1| peptidylprolyl isomerase PrsA [Bacillus pumilus SAFR-032]
          Length = 292

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 88/301 (29%), Gaps = 44/301 (14%)

Query: 21  VLIIFCIVPIVSYKSWAMSSR-IRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQE 79
            L     V +++  + +   + +  T     +T  ++   +          +    A+  
Sbjct: 5   ALAAVTAVSVLTLGACSSGDKDVIATTKSGDVTKEELYTTLK--------KQAGGDALNL 56

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           L+ + +   + + S    D     Y             ++F              K Y+ 
Sbjct: 57  LVQQKVLADKYKVSDKEIDKKMEEYKKTLGEDRLKQLQDEF-------------GKDYIK 103

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
            Q  +  + +          + E+ A    +K      +++                  +
Sbjct: 104 DQVKYELLTQKAAKANIKITDKEVKAYYDDLKGKIRASHIL---------------VADK 148

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYL-LESDLHPQF-QNLLKKSQNN 256
           K   + E+   +  K    + ++++        G   +   E  +   F +   K   N 
Sbjct: 149 KTADEVEKKLDKGEKWDAVVSEYSTDTASAAQGGDVGWFAKEGQMDENFSKAAFKLKVNE 208

Query: 257 TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNAII 314
            + P  +Q G   I   ++R  G    +KA L  +    K          + KL  +A +
Sbjct: 209 ISKPVKSQFGYHIIKKTEER--GKYDDMKADLKKELLDQKQADTNEIQTILNKLVKDADV 266

Query: 315 H 315
            
Sbjct: 267 K 267


>gi|325914922|ref|ZP_08177254.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325538815|gb|EGD10479.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 685

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 13/148 (8%), Positives = 47/148 (31%), Gaps = 4/148 (2%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
               ++K + +   + L   +L +   +    +    K  K A +++          +  
Sbjct: 303 KRYEEEKARFVEPDQRLASHILITAGSDAAAQKAAEAKAAKLAADAKQPGADFAALAKAN 362

Query: 223 ASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           +       + G   ++ +  +   F++        +   P  ++ G   I + + +   G
Sbjct: 363 SQDPGSKDAGGDLGWVEKGTMVKPFEDALFSMKAGDVVGPIKSEFGYHVIQLREVKGGQG 422

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKKL 308
           +      +  Q    +++    +    +
Sbjct: 423 KS--FEQVRDQFAAEQLKADADKAYADI 448



 Score = 50.8 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 47/192 (24%), Gaps = 34/192 (17%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTI-------------- 46
           M  K+    S +I       ++I F  V   SY     ++     +              
Sbjct: 30  MLQKLRDKTSGWIATAILGLLMIPFLFVIDNSYLGGIGANN-VAKVQAPPTWWKSAPTWW 88

Query: 47  ------NGEVITDGDISKRIALLKLQKINGELEK-------------IAVQELIVETLKK 87
                     I+  D   R    ++Q+   + EK               + +L+ E + +
Sbjct: 89  PVSLLWQHHEISTQDFRARFEQARMQERQRQGEKFDPRTFESRENKLQVLDQLVDEQVVR 148

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
              E +GI     TV  +                 +      G            +   +
Sbjct: 149 LGAEDAGIVIGDATVRDYITNIQAFQVDGKFSPDQYRAALAQGTPPRTPAQFDALVRDSL 208

Query: 148 VKNDFMLKYGNL 159
            ++         
Sbjct: 209 QQSVIPQAVAES 220


>gi|303251064|ref|ZP_07337250.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307252639|ref|ZP_07534532.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302650074|gb|EFL80244.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306859884|gb|EFM91904.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 625

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/400 (6%), Positives = 85/400 (21%), Gaps = 89/400 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +      F L+    V                 +NG  IT    +   
Sbjct: 1   MIENMHERTKGPV--FKIIFALVSLSFVITGIGTGLVGGDTAAVKVNGTEITQQAFNAAK 58

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              +                      +  +  +  L+ E L +Q  ++  +   +  +  
Sbjct: 59  NRQQSVLNAQMGERFWDLLDTPEYAKQFNQSVLNGLVDEELLRQYAKELKLGISAEQIKS 118

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE- 160
                    ++   S + +   L   G+  + +   +    ++  + +     ++   E 
Sbjct: 119 EIVNSPVFQQDGKFSNDLYQQTLRSNGLSADGYAAIVNEGMLFSQIQEGVIGSEFNVPEQ 178

Query: 161 --------------------------------MEIPANKQKMKNITVREYLIRTVLFSIP 188
                                            E+       K+  +    +     ++ 
Sbjct: 179 EALLAKLLLQKRQVRLANYSIAKEATNQTASAEELQKYYDAHKSELIEPEKLMVEYVTLT 238

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLP---------------------------KDCNKLEK 221
              + N   V          + +                             K+     +
Sbjct: 239 PTDVANNVQVNDEQVKTYYEKNKADYATKGETRSAHIQLANETDAKAVAEQVKNGADFAE 298

Query: 222 FASKIH-----DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK 275
            A             G   +         F+           +           I + ++
Sbjct: 299 LAKTKSTDKLSAAQGGDLGWAKAGTFPKAFEAAAASLQDGQVSAVVNVDGAYHIIKVLER 358

Query: 276 R--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           +   +     +K  ++       +    +   +++ + A 
Sbjct: 359 KAETVIPLEQVKDQITKTIRQELLLTEYSNIAREMANRAF 398


>gi|329123025|ref|ZP_08251596.1| peptidyl-prolyl cis-trans isomerase [Haemophilus aegyptius ATCC
           11116]
 gi|327471956|gb|EGF17396.1| peptidyl-prolyl cis-trans isomerase [Haemophilus aegyptius ATCC
           11116]
          Length = 622

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/395 (11%), Positives = 110/395 (27%), Gaps = 84/395 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           +  K+    +  I       + + F +  +  Y  ++ +      +NGEVI+  D   R 
Sbjct: 2   LIEKMHNLTNSKISKFILGLITVSFLVGGMSGYL-FSSNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  AL---LKLQKINGE-------------LEKIAVQELIV-----------------ETLKK 87
                ++ Q+                 L +  V  +I                  E +K+
Sbjct: 61  NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
             +            N  + +  +   L+++ ++S L      +         + I P  
Sbjct: 121 AIVTDPNFQVKGKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVPAQ 180

Query: 148 VK-------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL---- 184
           VK                    D M K    + EI    +  +   V+   ++       
Sbjct: 181 VKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYIDLS 240

Query: 185 ------------------------FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
                                     +  +    Q   ++  K A E   +     +  +
Sbjct: 241 ADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQFANEQDAKVAYEELQKGANFADVAK 300

Query: 221 KFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL 278
             +  KI   + G   ++ E++L   F++          + P         + + +++  
Sbjct: 301 AKSLDKISGENGGDLGWVNENELPKAFEDAAAALQVGQYSQPINVDGNYHIVLVQERK-A 359

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                +KA ++     + +E       K+    A 
Sbjct: 360 QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAF 394


>gi|229843938|ref|ZP_04464079.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae 6P18H1]
 gi|229812932|gb|EEP48620.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae 6P18H1]
          Length = 622

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/395 (11%), Positives = 110/395 (27%), Gaps = 84/395 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           +  K+    +  +       + + F +  +  Y  ++ +      +NGEVI+  D   R 
Sbjct: 2   LIEKMHNLTNSKVSKFILGLITVSFLVGGMSGYL-FSSNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  AL---LKLQKINGE-------------LEKIAVQELIV-----------------ETLKK 87
                ++ Q+                 L +  V  +I                  E +K+
Sbjct: 61  NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
             +            N  + +  +   L+++ ++S L      +         + I P  
Sbjct: 121 AIVTDPNFQVKGKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVPAQ 180

Query: 148 VK-------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL---- 184
           VK                    D M K    + EI    +  +   V+   ++       
Sbjct: 181 VKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYIDLS 240

Query: 185 ------------------------FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
                                     +  +    Q   ++  K A E   +     +  +
Sbjct: 241 ADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQFANEQDAKVAYEELQKGANFADVAK 300

Query: 221 KFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL 278
             +  KI   + G   ++ E++L   F++          + P         + + +++  
Sbjct: 301 AKSLDKISGENGGDLGWVNENELPKAFEDAAAALQVGQYSQPINVDGNYHIVLVQERK-A 359

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                +KA ++     + +E       K+    A 
Sbjct: 360 QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAF 394


>gi|307544940|ref|YP_003897419.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halomonas elongata
           DSM 2581]
 gi|307216964|emb|CBV42234.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halomonas elongata
           DSM 2581]
          Length = 607

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/255 (7%), Positives = 64/255 (25%), Gaps = 9/255 (3%)

Query: 63  LKLQKINGELEKIAVQEL-IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE-DF 120
            + Q       +   Q L + E   + E  +                   +     E   
Sbjct: 145 FRDQLRADMKRRQLQQGLAVSEFSLESEERRLAALQRQTRSFRHHALTVDDLESRPEASE 204

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
                      + +++   ++  +  + +     +    E ++                 
Sbjct: 205 QELQAYYEAHADDYQRPEQVKLAYVVLDREQMAEQADVSEQDLRDAWNAEAAEA----DR 260

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYLLE 239
           R     +     + +   + R+++  +         +   +++         G    +  
Sbjct: 261 RVSHIMVRFGDQRTRQEAEARLEEVRQRLADGASFADLAAEYSDDTSTSDEGGDLGVISR 320

Query: 240 SDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE 298
                 F +      +   ++   T  G+  I + +  D       +  L+ Q    ++ 
Sbjct: 321 GFFGEAFDEAAFSLGEGQVSDIVETDNGLHLIKVTEL-DRPSFEESRDRLARQVARKQVS 379

Query: 299 KHEAEYVKKLRSNAI 313
               +  ++L   + 
Sbjct: 380 TAFDDRAQRLIDESF 394



 Score = 66.6 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/302 (9%), Positives = 74/302 (24%), Gaps = 19/302 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSR--IRTTINGEVITDGDISK 58
           M   +    + +   +    V++   +    S       +       +NGE I    +  
Sbjct: 1   MLQSIRDRSASWGAKIIIGAVVVAMALFGAESLVGLLGGNDGDSVAKVNGESIPRQQLEL 60

Query: 59  RIALLKLQ-----KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
            +           +   EL    +  LI E L  Q  E+ G+    + ++   V      
Sbjct: 61  EVQRAIRSGQVPPEQERELRSQMLDSLISERLLTQYAEEGGLHLSESQIDQLIVNLPEFQ 120

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML-KYGNLEMEIPANKQKMKN 172
               +        +             Q       +            +E    +     
Sbjct: 121 DQDGKFSRELFRNRLSSAGFTPLAFRDQLRADMKRRQLQQGLAVSEFSLESEERRLAALQ 180

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
              R +    +     +++ +      +   +A     + P+          +       
Sbjct: 181 RQTRSFRHHALTVDDLESRPEASEQELQAYYEAHADDYQRPEQVKLAYVVLDREQMAEQA 240

Query: 233 KAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN 292
               + E DL   +     ++    ++  + + G       D+R      A    +  + 
Sbjct: 241 D---VSEQDLRDAWNAEAAEADRRVSH-IMVRFG-------DQRTRQEAEARLEEVRQRL 289

Query: 293 TP 294
             
Sbjct: 290 AD 291


>gi|254183780|ref|ZP_04890372.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia pseudomallei
           1655]
 gi|184214313|gb|EDU11356.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia pseudomallei
           1655]
          Length = 240

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 3/104 (2%)

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN-NTTNPYVTQK 265
              ++         +F++     S G   ++ +  L    +N +        + P     
Sbjct: 132 NQLIQGASFGELAMRFSTDASRDSGGDIGWVAQGVLSDVARNEIDAIVKSGFSMPIRGSN 191

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
           G   + + DKRD+         +  Q            ++ +LR
Sbjct: 192 GYHLLYVRDKRDIVA--PSLDQIREQLIELARVDKFERHLCELR 233


>gi|170702053|ref|ZP_02892969.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria IOP40-10]
 gi|170133039|gb|EDT01451.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria IOP40-10]
          Length = 644

 Score = 71.2 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/273 (8%), Positives = 59/273 (21%), Gaps = 22/273 (8%)

Query: 53  DGDISKRIALLKLQ-KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
             D+ +   LL  Q     + ++     L ++ +    +  +                 R
Sbjct: 133 SIDVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVASAFTPKGPAQRLSELAAQQR 192

Query: 112 NTGLSAEDFSSFLDKQGIGDNH---FKQYLAIQSIWPDVVKNDF--------MLKYGNLE 160
                      +  K    D     +          P+     +               +
Sbjct: 193 EVQALVLKTGDYAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVYSPAAAAASAQPTD 252

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            +I             E  +R     I      +          AE+    +    ++  
Sbjct: 253 ADIKKFYDDNPTHFRSEAQVRVSHIFIAAASDASAADKAAAKAKAEQLLADVKAHPDQFA 312

Query: 221 KFA-----SKIHDVSIGKAQYLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAI 272
           + A             G   ++                   Q + +    +  G   +  
Sbjct: 313 QIAQKDSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFALKQGDVSGVVQSDLGFHILKA 372

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAE 303
            + +   +     +K +++ Q       K   +
Sbjct: 373 TEVKPSVVKPFADVKDHIAVQLKQQYAAKAFTD 405



 Score = 45.8 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/211 (9%), Positives = 52/211 (24%), Gaps = 15/211 (7%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN-------------GELE 73
            V I  ++ +   S     +NG  IT  +          Q                 E  
Sbjct: 26  FVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAFRQQIDQARQALGGQFDIKAFDTPEHR 85

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV--QHARNTGLSAEDFSSFLDKQGIGD 131
           K  +  LI + +   E ++  +T   N V    +      +              Q +  
Sbjct: 86  KQVLDGLIQQRVLADETQRLHLTASDNAVRDALMSDPMIASLKKPDGSIDVERYAQLLSF 145

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                    + +   +                    Q++  +  ++  ++ ++    D  
Sbjct: 146 QGMTPEQYQERVRYSLALQQIPASIVASAFTPKGPAQRLSELAAQQREVQALVLKTGDYA 205

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            + Q    +     +  +           ++
Sbjct: 206 AKVQPTDAQLTAYYDAHKQSFATPETATIQY 236


>gi|261493077|ref|ZP_05989616.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261311256|gb|EEY12420.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 623

 Score = 70.9 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/400 (7%), Positives = 90/400 (22%), Gaps = 89/400 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+    +  +      F L+    V                 +NGE I+    +  +
Sbjct: 1   MIEKMHERTNGPV--FKIIFALVSISFVIGGIGTGLISQDNSVAKVNGEEISQQLFNNTL 58

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                    +  +  +  LI E L +Q  ++  +   ++ +  
Sbjct: 59  NREQNRLNAELGSRFWDLMDSPEYAAQFNQSVLNGLIDEELLRQYAKELKLGISADQIKS 118

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG---- 157
                    ++   S E +   L    +  + +   +    +   + +      +     
Sbjct: 119 EIVNSQMFQQDGKFSNELYQQTLRHNNLSADGYAAIVQEGMLQSQLQEGIINSDFNVPAQ 178

Query: 158 -----------------------------NLEMEIPANKQKMKNI--------------- 173
                                          E E+ A  +  K                 
Sbjct: 179 QALLAKLLLQQREVRLAEFSVAKEMENQTVSEQELRAYYEANKTKLLAPEKLAVEYVTLS 238

Query: 174 ----TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD------------CN 217
                 +  +    + +  D    +     +      +                      
Sbjct: 239 PKDVESKVEITNEQIQTYYDRNKADYVTKGEAHLAHIQVASEAEAQAIEQALKNGEDFAT 298

Query: 218 KLEKFASKIHDVSIG-KAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK 275
             +  +S     + G    +         F++ +   +    +           I + ++
Sbjct: 299 LAKNKSSDTLSANNGGDLGWAKAGTFPKAFEDAVANLTAGQMSAAVKVDNAYHIIKVLER 358

Query: 276 RDLGGEI--ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           +         +K  ++       +    +   +++ + A 
Sbjct: 359 KPEQVIELAQVKDKIAQTIRQELVLTEYSTVAREMANKAF 398


>gi|119897994|ref|YP_933207.1| putative cell binding factor [Azoarcus sp. BH72]
 gi|119670407|emb|CAL94320.1| putative cell binding factor [Azoarcus sp. BH72]
          Length = 260

 Score = 70.9 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 71/273 (26%), Gaps = 47/273 (17%)

Query: 47  NGEVITDGDISKRIALLKLQ--KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           NG  I        +A  + Q  + N +L     +EL+   +  QE  K GI   ++    
Sbjct: 31  NGTAIPAARSEAMLAEQRAQGAQDNPQLRDAVREELVRREVLSQEAGKKGIDKKADIQAQ 90

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
                                                 +    +++              
Sbjct: 91  ------------------------------MDMAKQAVLIRAYLQDYVKNNPVTDAELKK 120

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
                   +  +EY  R VL              ++  K+         K  +  ++   
Sbjct: 121 EYDSIKSRMGDKEYKPRHVL-----------VESEEHAKEIIGKLNGGAKFDDLAKESRD 169

Query: 225 KIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN--TTNPYVTQKGVEYIAICDKRDLGGEI 282
                  G   +         F + + K +    T  P  +  G   I + D R+L    
Sbjct: 170 PGSKDKGGDLGWTTPDRFVKPFSDAMVKLEKGKYTAAPVKSDYGFHVIMLDDVRELKA-- 227

Query: 283 ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                +  Q      ++   +++  LR+ A + 
Sbjct: 228 PPFEEVKPQLQQRLQQQKVEKHILDLRTKAKVQ 260


>gi|126665822|ref|ZP_01736803.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter sp. ELB17]
 gi|126629756|gb|EBA00373.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter sp. ELB17]
          Length = 268

 Score = 70.9 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 9/165 (5%), Positives = 46/165 (27%), Gaps = 6/165 (3%)

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP--- 213
              E +                ++      +          +++     +  +       
Sbjct: 91  DPTEQDCERFFNANPRRFCSPVVMAVSHILLAAAPDDVAELMRQEEVGDQLLKALFEGRS 150

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAI 272
           +  +  +++++       G    + +     +F+  +    +   +    T+ G   + +
Sbjct: 151 RFDDLAKQYSACESRHQSGSLGQISKGQTVDEFERPVLNLKEGLHSGLIETRYGYHIVRV 210

Query: 273 CDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             +          +K  +    + +   +   +Y++ L + A + 
Sbjct: 211 DQRIDGQPLPYEHVKPKIRQYLSESVTRRACRQYLQVLAAEAGVE 255


>gi|326561079|gb|EGE11444.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis 7169]
          Length = 614

 Score = 70.9 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/393 (8%), Positives = 86/393 (21%), Gaps = 88/393 (22%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVIT----DGDISKRI 60
           +   L  +   L     LI    + + ++   A+       +  +V+       +++   
Sbjct: 1   MRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHAIQPNELIKVGNQVVDVATFQAEVNAER 60

Query: 61  ALLKLQ------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
             L  Q           L+++ ++ L  + L + +    G+T     +      +     
Sbjct: 61  NALIEQGVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQHYEVFHD 120

Query: 115 LSAEDFSSFLDKQGIGDNHFK------------------------------------QYL 138
                   F                                                Q  
Sbjct: 121 NGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSKLIDLQLE 180

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ----- 193
           A +         D++ +    + +I A   + ++  ++   +      +  N L      
Sbjct: 181 AREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIELDPNVLSVGTPT 240

Query: 194 ----------------------------NQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
                                            Q R    +             +  +  
Sbjct: 241 EQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEALAKAHSDD 300

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKK----SQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
               + G       S       ++ +     S    + P  T  G     +     +  +
Sbjct: 301 PSGSNGGVIGSFNPSVFGEYAASVEQALSGLSVGQISQPVQTGFGYHIFKVT---KVSND 357

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
               A +  Q      +    +    L  +A I
Sbjct: 358 TPNIASMRDQLMDRAAKLKRDQAFADL--SAKI 388


>gi|237508070|ref|ZP_04520785.1| peptidylprolyl isomerase [Burkholderia pseudomallei MSHR346]
 gi|235000275|gb|EEP49699.1| peptidylprolyl isomerase [Burkholderia pseudomallei MSHR346]
          Length = 240

 Score = 70.9 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 33/105 (31%), Gaps = 3/105 (2%)

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN-NTTNPYVTQK 265
              ++         +F++     S G   ++ +  L    +N +        + P     
Sbjct: 132 NQLIQGASFGELAMRFSTDASRDSGGDIGWVAQGVLSDVARNEIDAIVKSGFSMPIRGSN 191

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
           G   + + DKRD+         +  Q            ++ +LRS
Sbjct: 192 GYHLLYVRDKRDIVA--PSLDQIREQLIELARVDKFERHLCELRS 234


>gi|242309396|ref|ZP_04808551.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239523967|gb|EEQ63833.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 275

 Score = 70.9 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 96/294 (32%), Gaps = 24/294 (8%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           +I  ++   ++ + +M + I   +NG  +T  ++       K+Q+ +   + IAV  LI 
Sbjct: 2   LIGILLSSFAFGAPSMVNGIAFFVNGNPVTLLEV------YKVQQRDKVNQNIAVDILIN 55

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           E L ++EI+K  I      +N    + AR    +A    S++   G    ++K+ +    
Sbjct: 56  EKLHEEEIKKHKIVATELEINDEINRIARQNQATAAQVESYIRSNGGNWENYKEEIKKGI 115

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           +   + +         ++     N                V      +    +  +Q   
Sbjct: 116 LKKKLYQVIAQESLKMVDENELLNYYNAHKEEFSIPQSIDVTKFFSKDGKALEALIQSNG 175

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYV 262
           K+ ++      +           +   + GK                          P  
Sbjct: 176 KEVQKGVQSENEVLQTAALNPQIVAAFTQGKIGTFTP------------------IYPIG 217

Query: 263 TQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
               V  I   +   +     ++  +  +    K +    EY +KLRSNA ++ 
Sbjct: 218 DDFVVFLIKAKNNPAILPFENVRNVVLQKIMGQKEDYLIYEYFEKLRSNAKVNI 271


>gi|153809076|ref|ZP_01961744.1| hypothetical protein BACCAC_03384 [Bacteroides caccae ATCC 43185]
 gi|149128409|gb|EDM19628.1| hypothetical protein BACCAC_03384 [Bacteroides caccae ATCC 43185]
          Length = 460

 Score = 70.9 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 101/312 (32%), Gaps = 18/312 (5%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI--ALLKLQ 66
           +  F+        L++     +V+Y    +   +   +  E I   D+ +    AL   +
Sbjct: 1   MKKFVN-FRFVVTLVLAVFANVVTYAQDNVVDEVVWVVGDEAILKSDVEEARMDALYNGR 59

Query: 67  KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY---FFVQHARNTGLSAEDFSSF 123
           + +G+   +  +E+ V+ L   + +   I      +                S E    +
Sbjct: 60  RFDGDPYCVIPEEIAVQKLFLHQAKLDSIEVSEAEIIQRVDMLTNMYIQQIGSREKMEEY 119

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR-- 181
            +K         +  A   +    ++   + +      E+    + +   ++     +  
Sbjct: 120 FNKTSAQIRETLRDNARDGLTVQKMQQKLVGEIKVTPAEVRRYFKDLPQDSIPYIPTQVE 179

Query: 182 -TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASK-IHDVSIGKAQYLL 238
             ++   P   +     V+KR++D  +   +           ++      +  G+  ++ 
Sbjct: 180 VQIITLQPKIPVAEIEDVKKRLRDYTDRVTKGEIDFSTLARLYSEDKASAIKGGECGFMG 239

Query: 239 ESDLHPQFQNLLKKSQN--NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK 296
              + P + N+    Q+    +    ++ G   I + +KR   G+     ++     P  
Sbjct: 240 RGMMDPSYANVAFSLQDPKKVSKIVESEFGYHIIQLIEKR---GDRVNTRHIL--LRPKV 294

Query: 297 IEKHEAEYVKKL 308
            EK   E   +L
Sbjct: 295 SEKELTEACARL 306


>gi|330817346|ref|YP_004361051.1| Putative PpiC-type peptidyl-prolyl cis-trans isomerase
           [Burkholderia gladioli BSR3]
 gi|327369739|gb|AEA61095.1| Putative PpiC-type peptidyl-prolyl cis-trans isomerase
           [Burkholderia gladioli BSR3]
          Length = 325

 Score = 70.9 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 71/300 (23%), Gaps = 55/300 (18%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQ 88
              S     + +     +N  +IT     +    +       E       +LI   + +Q
Sbjct: 67  AAASGAVAPLPANAIARVNDVLITRDQFEQA-RRVANTPDTPEARAALKNQLIAREVLRQ 125

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
              K+    D+       V+ A                  + +      +   S+    V
Sbjct: 126 AAVKAHY--DTQAQVLAVVEQA--------------KTTAMTEFWLHDQVRPASVTDAQV 169

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
           +  +    G                          L              +     A   
Sbjct: 170 RAKYDEVVGL-------------------------LGDTELKPSAIVLKDRAAADAALAQ 204

Query: 209 RLRLPKDCNKLEKFASKIHDVSIGKAQYLL----------ESDLHPQFQNLLKKSQNNTT 258
             R         + +        G   ++           ++   P  + L+   +   +
Sbjct: 205 LERGADFAQLARQLSQGPGAQQGGALNWVSFRLPIPEGGEQNWPQPLARALVALPRGGMS 264

Query: 259 -NPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             P     G   + + DKR   +     +KA L  Q     +++   E V  L   A I 
Sbjct: 265 REPIEAAGGYWILRVDDKRATRIPAFDDVKAALRQQLETAALQRATIEVVVDLLKQARIQ 324


>gi|33519602|ref|NP_878434.1| survival protein SurA precursor [Candidatus Blochmannia floridanus]
 gi|33517265|emb|CAD83649.1| survival protein SurA precursor [Candidatus Blochmannia floridanus]
          Length = 426

 Score = 70.9 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 85/286 (29%), Gaps = 16/286 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL------- 65
           +K     FV++   I  I  Y +     RI   +N  +I   D+  +I +LK        
Sbjct: 1   MKFFRILFVILTLKINTI--YSTLNTIDRIAALVNQNIILKSDVFNKINILKKDILHSDQ 58

Query: 66  -QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
               N +L +  + +LI+  L  Q   K+ +  D N ++      A    ++   F  +L
Sbjct: 59  FSLENTKLYQKILDQLIINNLIAQIATKNNVQIDHNNIDQVINYVAHCRNMTKNQFLMYL 118

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
                 +         Q I   ++ N  + +   +         +  +        + + 
Sbjct: 119 QHNLGLNFKQYYSEIYQDILNKLICNHIISQRIKISTHEINQTAQKLSFINFHKQFKFIH 178

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKA-----QYLLE 239
             I          +      AE+   +     N     +S  ++    +       +   
Sbjct: 179 TIIELPIPAETTQINILNNFAEQLSKKKELHDNIQNIISSYYNNNIFPRITTHIQPWTAW 238

Query: 240 SDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL 284
            +L   F          +   P  +   +  + I D R       +
Sbjct: 239 KNLPVIFDQYLQTAKPGDIIGPIHSFDSIHILKIQDIRTKPTVFPI 284



 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/220 (10%), Positives = 59/220 (26%), Gaps = 2/220 (0%)

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
               ++        +   +          Q          +  Q +      +     + 
Sbjct: 204 KKKELHDNIQNIISSYYNNNIFPRITTHIQPWTAWKNLPVIFDQYLQTAKPGDIIGPIHS 263

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
              + I   +      TV   +   +      +K +N    ++ +K  E           
Sbjct: 264 FDSIHILKIQDIRTKPTVFPIIKVKINGFYSKHKEKNIHIKKQLLKIKEALENHNTTFNT 323

Query: 218 KLEKFASKIHDVSIGK-AQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK 275
             ++ +   +  +     +++    +    Q+ L    +N  + P  T  G   I + D 
Sbjct: 324 IAQEQSKDFYFKNDENSPEWIDLDCIDINLQHTLLTLKKNQISMPEYTSNGWCIIKLIDI 383

Query: 276 RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                   ++          K      E++ +L+S + I 
Sbjct: 384 NKFNYSETIRERAYLHLLNQKFNTTLDEWIHELKSESYIK 423


>gi|285808214|gb|ADC35748.1| hypothetical protein [uncultured bacterium 293]
          Length = 250

 Score = 70.9 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/205 (8%), Positives = 43/205 (20%), Gaps = 11/205 (5%)

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
                        +              +     ++ ++   +    E EI    +    
Sbjct: 40  NEWLERRVLVLAARSRGLVKPGAGEAEERVAVEQLLASEMAARVKVSETEIADYARDHTA 99

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
              R   +      +P          +         +          +  +        G
Sbjct: 100 ELGRPEEVTLRQILVPTANEARDVQRR--------LQKDPKSFELLAQSVSRGPEAGKGG 151

Query: 233 KAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLS 289
                    L P+ +          T+   VT  G   + +  +           +  + 
Sbjct: 152 LMGSFSAGQLPPELEAAAFALKPGETSGIVVTPLGQHVLRLEARTAAHPFSPEETRDRVR 211

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAII 314
           A     K    + E V  L + A +
Sbjct: 212 ALLREKKSSLAQREIVAGLMARAKV 236


>gi|134295955|ref|YP_001119690.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           vietnamiensis G4]
 gi|134139112|gb|ABO54855.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           vietnamiensis G4]
          Length = 646

 Score = 70.9 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/273 (7%), Positives = 55/273 (20%), Gaps = 24/273 (8%)

Query: 55  DISKRIALLKLQ-KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
           D+ +   LL  Q     + ++     L ++ +    +  +                 R  
Sbjct: 135 DVQRYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVSSAFTPKGPAQRLSELAAQQREV 194

Query: 114 G-------------LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                            +   +             +   IQ +                +
Sbjct: 195 QALVLKSSDFAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVYSPAAAAAAASAQPTD 254

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            +I             E  +R     I      +          AE+    +    ++  
Sbjct: 255 ADIKKFYDDNPTHFRSEAQVRISHIFIAAASNASAADKAAAKAKAEQLLADVKAHPDQFA 314

Query: 221 KFA-----SKIHDVSIGKAQYLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAI 272
           + A             G   ++                   Q   +    +  G   +  
Sbjct: 315 QIAQKSSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFALKQGEVSGVVESDLGFHILKA 374

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAE 303
            + +   +     +K  ++         K   +
Sbjct: 375 TEVKPSVVKPFADVKDQIAVDLKQQYAAKAFTD 407



 Score = 45.8 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/211 (9%), Positives = 53/211 (25%), Gaps = 15/211 (7%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN-------------GELE 73
            V I  ++ +   S     +NG  IT  +          Q                 E  
Sbjct: 26  FVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAFRQQIDQARQALGGQFDIKMFDTPEHR 85

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV--QHARNTGLSAEDFSSFLDKQGIGD 131
           K  +  LI + +   E ++  +T   N V    +      +              Q +  
Sbjct: 86  KQVLDGLIQQRVLADETQRLHLTASDNAVRDALMSDPMIASLKKPDGTIDVQRYAQLLSF 145

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                    + +   +          +         Q++  +  ++  ++ ++    D  
Sbjct: 146 QGMTPEQYQERVRYSLALQQIPASIVSSAFTPKGPAQRLSELAAQQREVQALVLKSSDFA 205

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            + Q    +     +  +           ++
Sbjct: 206 AKVQPTDAQLTAYYDAHKQSFATPETATIQY 236


>gi|303253594|ref|ZP_07339732.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307245913|ref|ZP_07527996.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307247999|ref|ZP_07530028.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307254886|ref|ZP_07536708.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307257049|ref|ZP_07538824.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307259327|ref|ZP_07541054.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|302647514|gb|EFL77732.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306853132|gb|EFM85354.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306855397|gb|EFM87571.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306862127|gb|EFM94099.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306864420|gb|EFM96328.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306866563|gb|EFM98424.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 625

 Score = 70.9 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/400 (6%), Positives = 84/400 (21%), Gaps = 89/400 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +      F L+    V                 +NG  IT    +   
Sbjct: 1   MIENMHERTKGPV--FKIIFALVSLSFVITGIGTGLVGGDTAAVKVNGTEITQQAFNAAK 58

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              +                      +  +  +  L+ E L +Q  ++  +   +  +  
Sbjct: 59  NRQQSVLNAQMGERFWDLLDTPEYAKQFNQSVLNGLVDEELLRQYAKELKLGISAEQIKS 118

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE- 160
                    ++   S + +   L   G+  + +   +    ++  + +      +   E 
Sbjct: 119 EIVNSPVFQQDGKFSNDLYQQTLRSNGLSADGYAAIVNEGMLFSQIQEGVIGSDFNVPEQ 178

Query: 161 --------------------------------MEIPANKQKMKNITVREYLIRTVLFSIP 188
                                            E+       K+  +    +     ++ 
Sbjct: 179 EALLAKLLLQKRQVRLANYSIAKEATNQAASAEELQKYYDAHKSELIEPEKLTVEYVTLT 238

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLP---------------------------KDCNKLEK 221
              + N   V          + +                             K+     +
Sbjct: 239 PTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHIQLANETDAKAVAEQVKNGADFAE 298

Query: 222 FASKIH-----DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK 275
            A             G   +         F+           +           I + ++
Sbjct: 299 LAKTKSTDKLSAAQGGDLGWAKAGTFPKAFEAAAASLQDGQVSAVVNVDGAYHIIKVLER 358

Query: 276 R--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           +   +     +K  ++       +    +   +++ + A 
Sbjct: 359 KAETVIPLEQVKDQITKTIRQELLLTEYSNIAREMANRAF 398


>gi|163788662|ref|ZP_02183107.1| putative exported peptidyl-prolyl cis-trans isomerase
           [Flavobacteriales bacterium ALC-1]
 gi|159875899|gb|EDP69958.1| putative exported peptidyl-prolyl cis-trans isomerase
           [Flavobacteriales bacterium ALC-1]
          Length = 484

 Score = 70.9 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/288 (10%), Positives = 79/288 (27%), Gaps = 16/288 (5%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQ--KINGELEKIAVQELIVETLKKQEIEKSGI 95
            +  +   +   ++ + D+ + IA L+ Q   + G         L+   L   +  +  +
Sbjct: 57  KADGVAAVVGDFILLESDLDREIAQLEAQGANLEGVTRCELFGSLLEGKLYAHQAIQDSV 116

Query: 96  TFDSNTVNYFFVQHARNT-GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV----VKN 150
             +   +     Q  +     +  D    L+          +    +    +     ++ 
Sbjct: 117 LVNELYIQSQVEQRLQYLLAQTKRDMQYLLNIYNKDSEEALRDEMFEITKNEYLALEMQK 176

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
               +      E+      +       +     L  I       Q   Q  I   +  + 
Sbjct: 177 KVTGEIEVTPEEVRQFFNSIPEDEKPIFGTELKLAEIVVIPEVTQAAKQAVIDKLKGFKR 236

Query: 211 RLPKDCNKLEKFA-----SKIHDVSIG--KAQYLLESDLHPQFQNLLKKSQNNTTNPYVT 263
            + ++              K    + G  K        +    +      +   + P+ T
Sbjct: 237 DVEENGASFTTKVLFYTDDKPSKPNGGLYKLNRKQPRMVKEFREVAFSLQEGEISEPFET 296

Query: 264 QKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           + G   I +   R    +      L  + T   I+K   + + ++R+ 
Sbjct: 297 EYGYHIILLEKIRGQQYD-VRHILLRPELTQDAIQKA-KDEIDEVRAK 342


>gi|134282592|ref|ZP_01769296.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia pseudomallei
           305]
 gi|134246149|gb|EBA46239.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia pseudomallei
           305]
          Length = 240

 Score = 70.9 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 3/104 (2%)

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN-NTTNPYVTQK 265
              ++         +F++     S G   ++ +  L    +N +        + P     
Sbjct: 132 NQLIQGASFGELAMRFSTDASRDSGGDIGWVAQGVLSDVARNEIDAIVKSGFSMPIRGSN 191

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
           G   + + DKRD+         +  Q            ++ +LR
Sbjct: 192 GYHLLYVRDKRDIVA--PSLDQIREQLIELARVDKFERHLCELR 233


>gi|68249587|ref|YP_248699.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           86-028NP]
 gi|68057786|gb|AAX88039.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           86-028NP]
          Length = 622

 Score = 70.9 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/395 (11%), Positives = 111/395 (28%), Gaps = 84/395 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           +  K+    +  +       + + F +  +  Y  ++ +      +NGEVI+  D   R 
Sbjct: 2   LIEKMHNLTNSKVSKFILGLITVSFLVGGMSGYL-FSSNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  AL---LKLQKINGE-------------LEKIAVQELIVETLKKQEIE------------- 91
                ++ Q+                 L +  V  +I + L +Q ++             
Sbjct: 61  NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 92  ----KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
                          N  + +  +   L+++ ++S L      +         + I P  
Sbjct: 121 AIVTDPNFQVKGKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVPAQ 180

Query: 148 VK-------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL---- 184
           VK                    D M K    + EI    +  +   V+   ++       
Sbjct: 181 VKNSAEVFFQKRLARLATLSLEDEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYIDLS 240

Query: 185 ------------------------FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
                                     +  +    Q   ++  K A E   +     +  +
Sbjct: 241 ADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQFANEQDAKVAYEELQKGANFADVAK 300

Query: 221 KFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL 278
             +  KI   + G   ++ E++L   F++          + P         + + +++  
Sbjct: 301 AKSLDKISGENGGDLGWVNENELPKAFEDAAAALQVGQYSQPINVDGNYHIVLVQERK-A 359

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                +KA ++     + +E       K+    A 
Sbjct: 360 QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAF 394


>gi|282880884|ref|ZP_06289577.1| PPIC-type PPIASE domain protein [Prevotella timonensis CRIS 5C-B1]
 gi|281305266|gb|EFA97333.1| PPIC-type PPIASE domain protein [Prevotella timonensis CRIS 5C-B1]
          Length = 475

 Score = 70.9 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/277 (10%), Positives = 69/277 (24%), Gaps = 35/277 (12%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELI 81
           +++  ++   S         I  TING+ I   +              G ++K +V E +
Sbjct: 4   ILLAVMLACCSLVLAQQDDPILMTINGKNIHRSEFEYSYN---KNNAEGVIDKKSVDEYV 60

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
                                        +          +    +     +    +   
Sbjct: 61  DLF---------------------INYQLKVIAAEEARLDTLSSFKKEFAMYRDAQIKPT 99

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV-LFSIPDNKLQNQGFVQK 200
            I    V+            EI        N +     +  + +         ++   ++
Sbjct: 100 MITDADVEQKAH--------EIYQQTANRVNASGGLVKVSHILIALKQTAGEVDRRIAEQ 151

Query: 201 RIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTT 258
           R      +  +        ++ +         G+  +L       +F + +    +   +
Sbjct: 152 RADSVYRALCKGANFGELAKRVSDDRASASRGGELPWLERGQTLEEFDKAIFSMKKGELS 211

Query: 259 NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT 295
            P  T  G   I + DKR      +LK  +       
Sbjct: 212 KPVQTPAGYHIIFLKDKRSFFPYDSLKTEILQFIEQR 248


>gi|229189238|ref|ZP_04316262.1| Foldase protein prsA 1 [Bacillus cereus ATCC 10876]
 gi|228594282|gb|EEK52077.1| Foldase protein prsA 1 [Bacillus cereus ATCC 10876]
          Length = 288

 Score = 70.9 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/305 (11%), Positives = 90/305 (29%), Gaps = 45/305 (14%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S +I T+  G+ IT  +  +++        N +  K 
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKIVTSKAGD-ITKEEFYEQMK-------NSQTGKQ 52

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +++E +  +  +      D                   + F + L +QG+ +   K
Sbjct: 53  TLNNMVMEKVLIKNYKVDDKEVDKKYD--------EMKKQLGDQFDTLLKQQGLKEETVK 104

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +         ++     K      +       +                         
Sbjct: 105 NGVRASLAQEKAIEKTITDKELKENYKPEIKASHILVKD--------------------- 143

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              +   K  +E   +        ++++         G   Y     +  +F++   K  
Sbjct: 144 ---EATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGYFTAGKMVKEFEDAAYKLK 200

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
           ++  + P  +Q G   I + D ++        KA +  +    K++  +   + + K   
Sbjct: 201 KDEVSEPVKSQFGYHIIKVTDIKEPEKSFEQSKADIKKEIVQKKMQDGQFMNDLMMKEIK 260

Query: 311 NAIIH 315
            A + 
Sbjct: 261 KADVK 265


>gi|167723994|ref|ZP_02407230.1| putative rotamase [Burkholderia pseudomallei DM98]
 gi|167828511|ref|ZP_02459982.1| putative rotamase [Burkholderia pseudomallei 9]
 gi|167898574|ref|ZP_02485975.1| putative rotamase [Burkholderia pseudomallei 7894]
 gi|167906920|ref|ZP_02494125.1| putative rotamase [Burkholderia pseudomallei NCTC 13177]
 gi|167915279|ref|ZP_02502370.1| putative rotamase [Burkholderia pseudomallei 112]
          Length = 180

 Score = 70.9 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 3/104 (2%)

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN-NTTNPYVTQK 265
              ++         +F++     S G   ++ +  L    +N +        + P     
Sbjct: 72  NQLIQGASFGELAMRFSTDASRDSGGDIGWVAQGVLSDVARNEIDAIVKSGFSMPIRGSN 131

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
           G   + + DKRD+         +  Q            ++ +LR
Sbjct: 132 GYHLLYVRDKRDIVA--PSLDQIREQLIELARVDKFERHLCELR 173


>gi|120611614|ref|YP_971292.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
           AAC00-1]
 gi|120590078|gb|ABM33518.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
           AAC00-1]
          Length = 265

 Score = 70.9 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 90/305 (29%), Gaps = 49/305 (16%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--GELE 73
           +    +  +     + +    A++  I   +NG+ +    +      ++        E+E
Sbjct: 5   MKKKLLSGLVAAAVLGTSALPAIAQNI-AVVNGKAVPKERVEVLKQQVERSGRPITPEIE 63

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
               +E+I   +  QE +K G+    N  +                              
Sbjct: 64  GQIKEEVIAREIFLQEAQKRGLEGSQNVKDQ----------------------------- 94

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
             +      +  ++  +                 + +   T +EY    +L         
Sbjct: 95  -MELARQTILIRELFADYQKANPVTDADIQAEYDKFVAANTGKEYKASHIL--------- 144

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLK 251
                + + K    S  +  K  +  +K +         G   +   S    +F + L+K
Sbjct: 145 --VETEDQAKSIIASIKKGAKFEDIAKKQSKDPGSGARGGDLDWATPSSYVSEFTEALVK 202

Query: 252 KSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
             +   T  P  TQ G   I + D R+          + AQ      ++  A++ + LR+
Sbjct: 203 LDKGKMTQTPVKTQFGWHVIRLDDVREAKL--PKLDEVKAQIAQQLQQQKLAKFQEDLRA 260

Query: 311 NAIIH 315
            A + 
Sbjct: 261 KAKVE 265


>gi|222824289|ref|YP_002575863.1| hypothetical protein Cla_1294 [Campylobacter lari RM2100]
 gi|222539510|gb|ACM64611.1| conserved hypothetical protein [Campylobacter lari RM2100]
          Length = 275

 Score = 70.9 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 88/295 (29%), Gaps = 28/295 (9%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
            +       +         +   +  + IT  DI + +  LK        ++ A+  L+ 
Sbjct: 4   FLISCCFAANVLYAQTLGGVAMIVENQPITLYDIEQTMKELKT-----NDKQKAIAFLVD 58

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           + +++ E +K GI   +  +N    Q A++         + ++K G+    FK  +    
Sbjct: 59  DKIQQSEAKKLGIYVSTFELNEKLDQIAKDNKTDINGLQARMEKDGLSFEVFKNKVRKNL 118

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
               + ++       N++ E   +  +        +    ++     N    Q   Q  +
Sbjct: 119 EREKLYRSIMQNAKINIDDETLKHFYESNLDKFSTFSNIDLVVYNSTNPELLQQLAQNPM 178

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYV 262
               + + +                                     L        T    
Sbjct: 179 YKNSQIKSKAISLNAASID---------------------PRLLALLNNTKIGEFTPVLN 217

Query: 263 TQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            +       + +K  ++      +K  ++   T  + E+    ++ K+R+NA I 
Sbjct: 218 GENAYIVYFVKEKYGKNPIEFDLIKDQITNAYTINQKEQALKNHLDKIRANAHIE 272


>gi|188996490|ref|YP_001930741.1| SurA domain protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931557|gb|ACD66187.1| SurA domain protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 290

 Score = 70.9 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/308 (15%), Positives = 101/308 (32%), Gaps = 31/308 (10%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMS----SRIRTTINGEVITDGDISKRIALLKLQKIN 69
            +L  + +L++       +            ++   +NGE +   D+        ++   
Sbjct: 5   SILNAFLILLVVLSSTFNNKAKAEDGYQLFDKVVLVVNGEPVLKSDLEFAKNWYNIKDD- 63

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG-LSAEDFSSFLDKQG 128
               K   +++I   L  Q+  K GI+     V+   +  A+  G    E F   L+  G
Sbjct: 64  ----KEVEEKIINSFLLAQQARKMGISVSPQEVDNAVLNIAKANGINDLETFKKKLEDSG 119

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
           I  +  K++LA   +   ++      K     +E              +  ++TV     
Sbjct: 120 ISYSKLKEFLARDMLANRLLHLYMREKASKGIIE------------GTKEDVKTVRLIFI 167

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQ 247
                +   V  +     +  L          K++       + G    + + DL  +  
Sbjct: 168 SKNRPDYQEVLSK----LDKELNKNNFSEFASKYSDDKFTAENKGLVGEIKKGDLVKELD 223

Query: 248 NLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
             +   +        T +G  +I I        ++  K  +S +    K++K     +KK
Sbjct: 224 EAIFSHKAGDIFKVETNEGTYFIYIE---KEENKLIPKTEISEKEV-EKLKKAYDLLLKK 279

Query: 308 LRSNAIIH 315
           L+  A+I 
Sbjct: 280 LKEQAVIQ 287


>gi|167742962|ref|ZP_02415736.1| putative rotamase [Burkholderia pseudomallei 14]
          Length = 190

 Score = 70.9 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 3/104 (2%)

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN-NTTNPYVTQK 265
              ++         +F++     S G   ++ +  L    +N +        + P     
Sbjct: 82  NQLIQGASFGELAMRFSTDASRDSGGDIGWVAQGVLSDVARNEIDAIVKSGFSMPIRGSN 141

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
           G   + + DKRD+         +  Q            ++ +LR
Sbjct: 142 GYHLLYVRDKRDIVA--PSLDQIREQLIELARVDKFERHLCELR 183


>gi|116873652|ref|YP_850433.1| prsA protein, export protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742530|emb|CAK21654.1| prsA protein, export protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 291

 Score = 70.9 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/304 (10%), Positives = 89/304 (29%), Gaps = 40/304 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +L +  ++ + S  +      +  T  G+ +T  ++ + +          +    
Sbjct: 1   MKKKLILGLVMVMALFSLAACGGGGDVVKTDAGD-VTQDELYEAMK--------DKYGSE 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            VQ+L  E +   + + S    D            +        +              +
Sbjct: 52  FVQQLTFEKVLGDKYKVSDEDVD------------KKFKEYKAQYGDQFAAVLAQSGLTE 99

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    Q  +  +V+          +  +    +                +          
Sbjct: 100 KTFKSQLKYNLLVQKATEANTDTSDKALKEYYKT---------------WQPDITVSHIL 144

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLK--K 252
              +K+ K+ E+      K  +  +++++      + G+        + P F+      K
Sbjct: 145 VADEKKAKEVEQKLKDGAKFSDLAKEYSTDTATKENGGQLAAFGPGKMDPAFEKAAYALK 204

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA-QNTPTKIEKHEAEYVKKLRSN 311
           ++ + + P  TQ G   I + +          K  + A   T     ++  + +KK   +
Sbjct: 205 NKGDISAPVKTQYGYHIIQMDEPATKTTFDKDKKAVKASYLTSQLTNENMQKTLKKEFKD 264

Query: 312 AIIH 315
           A + 
Sbjct: 265 ANVK 268


>gi|239994001|ref|ZP_04714525.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas
           macleodii ATCC 27126]
          Length = 528

 Score = 70.9 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/266 (8%), Positives = 65/266 (24%), Gaps = 11/266 (4%)

Query: 54  GDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
             ++     L++Q    +L                E++++           + +  +   
Sbjct: 45  FQVADFRDYLRVQMTQNQLAAALTNS---SFALDGEVQQANALQRQTRDAKYVLVSSDEF 101

Query: 114 GLSAE-DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
             S E   +            F     ++  +  +  +D   +    E  +    +    
Sbjct: 102 AGSIEVTDADVEAFYNNNIASFDTDEQVKLAYVKLSVDDLKDRVSVDEEAVRTYYENNLG 161

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSI 231
              +E   R     I      +    +                    E  +       + 
Sbjct: 162 SYGKEEERRVSHILIEAGDDADAAKAKAESLK--AELDNGADFAALAEADSDDTFSAENG 219

Query: 232 GKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAY 287
           G   ++    + P F       ++  + ++   T+ G   I + D ++  +     +   
Sbjct: 220 GDLDFITPEMMDPAFDEAAFALQNVGDVSDVVETEFGFHIIKLTDLKEAQVKSFDEVAGE 279

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAI 313
           +          +   E    L   A 
Sbjct: 280 IRDTLLYDAAMEKYFELQNTLAEIAF 305


>gi|124486132|ref|YP_001030748.1| hypothetical protein Mlab_1314 [Methanocorpusculum labreanum Z]
 gi|124363673|gb|ABN07481.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methanocorpusculum
           labreanum Z]
          Length = 93

 Score = 70.9 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 11/82 (13%), Positives = 27/82 (32%), Gaps = 1/82 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQN 255
             + + K+  +            + ++      + G   Y  +  +   F++   K    
Sbjct: 12  KTEAQAKEIMQKISAGDDFAKLAKMYSQCPSGNAGGDLGYFGKGQMVKPFEDACFKAKAG 71

Query: 256 NTTNPYVTQKGVEYIAICDKRD 277
           +   P  TQ G   I + D ++
Sbjct: 72  DVVGPVKTQFGWHIIKVTDIKN 93


>gi|196232957|ref|ZP_03131806.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chthoniobacter
           flavus Ellin428]
 gi|196222935|gb|EDY17456.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chthoniobacter
           flavus Ellin428]
          Length = 136

 Score = 70.9 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 4/111 (3%)

Query: 210 LRLPKDCNKLEKFASKIHDV-SIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGV 267
            +        ++ +       + G   +  +  + P+F N      +   ++P  +  G 
Sbjct: 2   KKGEDFGKLAQEISEDPSAKENKGDLDFFRKEAMVPEFSNAAFGMKKGEISDPVRSDFGF 61

Query: 268 EYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             I + D++D         K  L A     K +    E +K +R  A +  
Sbjct: 62  HVIKVTDRKDAETVTLEKAKPQLLAFLKNQKKQAAVEEVIKGVREKAEVKI 112


>gi|325518979|gb|EGC98507.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           TJI49]
          Length = 644

 Score = 70.9 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/271 (8%), Positives = 59/271 (21%), Gaps = 22/271 (8%)

Query: 55  DISKRIALLKLQ-KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
           D+ +   LL  Q     + ++     L ++ +    +  +                 R  
Sbjct: 135 DVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVSSAFTPKSLAQHLSELAAQQREV 194

Query: 114 GLSAEDFSSFLDKQGIGDNH---FKQYLAIQSIWPDVVKNDF--------MLKYGNLEME 162
                  S +  K    D     +          P+     +               + +
Sbjct: 195 QALVLKTSDYAAKVQPTDAQLAAYYDAHKQSFATPETATIQYLVYSPAAAAASAQPTDAD 254

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +             E  +R     I      +          AE+    +    ++  + 
Sbjct: 255 VKKFYDDNPTHFRTEAQVRVSHIFIAAASDASAADKAAAKAKAEQLLADVKAHPDQFAQI 314

Query: 223 A-----SKIHDVSIGKAQYLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAICD 274
           A             G   ++                   Q   +    +  G   +   +
Sbjct: 315 AQKNSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFALKQGEVSGVVQSDLGFHILKATE 374

Query: 275 KRD--LGGEIALKAYLSAQNTPTKIEKHEAE 303
            +   +     +K  ++A        K  ++
Sbjct: 375 VKPSAVKPFAEVKDEIAASLKQQYASKAFSD 405



 Score = 45.1 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/211 (9%), Positives = 52/211 (24%), Gaps = 15/211 (7%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN-------------GELE 73
            V I  ++ +   S     +NG  IT  +          Q                 +  
Sbjct: 26  FVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAFRQQIDQARQALGGQFDIKAFDTPDHR 85

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQHARNTGLSAEDFSSFLDKQGIGD 131
           K  +  LI + +   E ++  +T   N V           +              Q +  
Sbjct: 86  KQVLDGLIQQRVLADETQRLHLTASDNAVREALLSDPMIASLKKPDGTIDVERYAQLLSF 145

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                    + +   +          +      +  Q +  +  ++  ++ ++    D  
Sbjct: 146 QGMTPEQYQERVRYSLALQQIPASIVSSAFTPKSLAQHLSELAAQQREVQALVLKTSDYA 205

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            + Q    +     +  +           ++
Sbjct: 206 AKVQPTDAQLAAYYDAHKQSFATPETATIQY 236


>gi|254194298|ref|ZP_04900730.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia pseudomallei
           S13]
 gi|169651049|gb|EDS83742.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia pseudomallei
           S13]
          Length = 229

 Score = 70.9 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 3/104 (2%)

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN-NTTNPYVTQK 265
              ++         +F++     S G   ++ +  L    +N +        + P     
Sbjct: 121 NQLIQGASFGELAMRFSTDASRDSGGDIGWVAQGVLSDVARNEIDAIVKSGFSMPIRGSN 180

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
           G   + + DKRD+         +  Q            ++ +LR
Sbjct: 181 GYHLLYVRDKRDIVA--PSLDQIREQLIELARVDKFERHLCELR 222


>gi|307822662|ref|ZP_07652893.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacter
           tundripaludum SV96]
 gi|307736266|gb|EFO07112.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacter
           tundripaludum SV96]
          Length = 620

 Score = 70.9 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/241 (8%), Positives = 68/241 (28%), Gaps = 3/241 (1%)

Query: 66  QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
           +  N  + +   + +I  +   +   +S     +   +  +V  A               
Sbjct: 144 RIKNALIMEQFQRSIIDSSFATKYDVESFFKIQNQQRDVDYVTVAVQKLAEQPAEEEIAA 203

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
                 + ++    +   + ++   D        + ++ A  ++ K+        +    
Sbjct: 204 YYQQHQDLYQTPEQVSVEYIELSLEDIAKTIAVTDDKLKAFYEEQKDQYTTPERRKISHI 263

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ 245
               N   ++    ++   A++            E    K+   + G         +   
Sbjct: 264 LFAINDKVDEKTALEKALKAQKELANKDFAAVAAEVSDDKLTAKTGGDLGLFNAGVMEKS 323

Query: 246 FQNLLKK-SQNNTTNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEA 302
           F++          +NP  +  G   I + +    ++    ++K  ++      + E    
Sbjct: 324 FEDAASALKLGEVSNPVKSAFGYHLIKVTELVPGEIKPFESVKNEVTKAYQKAQAENAFY 383

Query: 303 E 303
           E
Sbjct: 384 E 384



 Score = 52.8 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/308 (8%), Positives = 80/308 (25%), Gaps = 15/308 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M +K+               + + F +  I +Y      +    ++  +     D++K  
Sbjct: 1   MLTKIREKAQGAFAWGILIIICVPFALWGIQNYLDTGEEAP-VASVGDKDFFQRDVNKAY 59

Query: 61  ALLKLQKI-----NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
                           L+  A+++LI + +  Q +  +G+    +    F          
Sbjct: 60  EQYSQNLQGMTIDEQTLKAQALEKLIKDEVLLQYVHANGLVTTDDAAREFIQSLPYFQVD 119

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
              D   +                 +     +++        +        +   K    
Sbjct: 120 GKFDDKRY-KTMLNLQKMSSGEFVNRIKNALIMEQFQRSIIDSSFATKYDVESFFKIQNQ 178

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
           +  +    +      +   +  +    +  ++      +   +  + + +    +I    
Sbjct: 179 QRDVDYVTVAVQKLAEQPAEEEIAAYYQQHQDLYQTPEQVSVEYIELSLEDIAKTI---- 234

Query: 236 YLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT 295
               +    + +   ++ ++  T P   +      AI DK D    +        +    
Sbjct: 235 ----AVTDDKLKAFYEEQKDQYTTPERRKISHILFAINDKVDEKTALEKALKAQKELANK 290

Query: 296 KIEKHEAE 303
                 AE
Sbjct: 291 DFAAVAAE 298


>gi|257092460|ref|YP_003166101.1| EpsD family peptidyl-prolyl cis-trans isomerase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044984|gb|ACV34172.1| peptidyl-prolyl cis-trans isomerase, EpsD family [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 320

 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/309 (8%), Positives = 76/309 (24%), Gaps = 45/309 (14%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYK-SWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
           +    T  ++++  +            ++++   +NG  I+   I+  +A         +
Sbjct: 8   MPFAATATIVMVLALTACSGKDDKTKSATQVAAKVNGGEISVHQINDVLARAG-NVPADQ 66

Query: 72  LEKI---AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             +     ++ LI + L  QE  +  +                               + 
Sbjct: 67  ARQASGKVLEGLIGQELLLQEAMEKKL------------------------------DRT 96

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                  +    + +    V +           E+         +     +         
Sbjct: 97  APVVQAIEAAKREILARAYVDSVTAQAGKPDAAEVHGYYASNPLLFSARRIYNI------ 150

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
                       ++   +E   R     +       +    + G         L      
Sbjct: 151 --NELGVAIAADKMPALQERVDRAKSLNDVAAWLKEQNIPFNAGS-GAKGAEQLPLNLLP 207

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEI-ALKAYLSAQNTPTKIEKHEAEYVKK 307
           ++ + ++          G   + +   RD   +    +  +       K  +     +K+
Sbjct: 208 IVAEMRDGQIRLVTMPGGAAVLQLIASRDQPVDEQTARPAIEQFLANKKKSELAETEMKR 267

Query: 308 LRSNAIIHY 316
           LR+ A I Y
Sbjct: 268 LRAAAKIEY 276


>gi|253567247|ref|ZP_04844697.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_2_5]
 gi|251944078|gb|EES84597.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_2_5]
          Length = 517

 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/297 (10%), Positives = 75/297 (25%), Gaps = 41/297 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    V  + C+    +    A    +   ING+ IT  +  +                 
Sbjct: 1   MKKILVGTLTCLFG--AIAGHAQQDPVLMRINGQDITRSEFER----------------- 41

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
                                 +  +         R   L  +        Q  G +   
Sbjct: 42  ------------------FCHRNKPSGIAGKETLKRCADLFVDMKLKLSAAQKAGLDTVS 83

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
            +      +   +   ++      E        +MK  +    +    +F          
Sbjct: 84  DFRTEMENYHRALSRSYLTDSATDEAYAKKLYDQMKTRSAAGEVKVMRIFRYLPQTALPH 143

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG-KAQYLLESDLHPQFQNLLKKSQ 254
              + +        +         +   +K  D        +L  S      +       
Sbjct: 144 HLREAQNLMDSLYHVLEAHPGIDFKTLVNKYSDDKKEFWMGWLQTSQ--EFEEVAFSLKD 201

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT-KIEKHEAEYVKKLRS 310
              + P+ T KG++ + +  +R++     ++  L  + +     +K    +V KL+S
Sbjct: 202 GEYSKPFFTPKGIQIVKVTGRREIPPFEQIRGELIHKLSRRPGTDKEIELWVNKLKS 258


>gi|186474397|ref|YP_001863368.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phymatum STM815]
 gi|184198356|gb|ACC76318.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phymatum STM815]
          Length = 284

 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/317 (11%), Positives = 79/317 (24%), Gaps = 59/317 (18%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSS----RIRTTINGEVITDGDISKRIALLKLQKINGE 71
                 L +    P+ +  + A ++         ING  I    +   +   + Q    +
Sbjct: 9   FAAATALYLGLTAPVPAQTASAPAASLPAGTVAIINGVSIPQAQLDAAVQATR-QPDTPQ 67

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           L +    +LI   L +Q  EK+G                                     
Sbjct: 68  LRQALKAQLITRELFRQNAEKAGY------------------------------GNKPEV 97

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                   + +     +K++                + + ++   +Y  R +        
Sbjct: 98  QQVINATKVNAESQLYLKDNIHPDAVTDAQVKSRYDEIVASLGKDDYRPRII-------- 149

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL---------LESDL 242
                                        +++      + G+  ++           S L
Sbjct: 150 ---AVADAMTAATVLGGLKAGKSFDVLARQYSITPDKANGGELPWVSFKAPAAEGKTSGL 206

Query: 243 H-PQFQNLLKKSQNNTT-NPYVTQKGVEYIAICDKRDLGG--EIALKAYLSAQNTPTKIE 298
             P  Q L +      T  P +       + +  KR         +K  +  Q     +E
Sbjct: 207 PLPVAQALTQLPVGGVTPEPVIVGNARVIVKLDAKRPTQVPKFDQVKDTIRQQLQALALE 266

Query: 299 KHEAEYVKKLRSNAIIH 315
           K  A++   L  NA I 
Sbjct: 267 KASAQFTAGLLKNATIQ 283


>gi|332970309|gb|EGK09301.1| peptidyl-prolyl cis-trans isomerase [Kingella kingae ATCC 23330]
          Length = 610

 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/258 (10%), Positives = 70/258 (27%), Gaps = 10/258 (3%)

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            + +A  + +     L     Q  + +    Q +          T  +    +A++  + 
Sbjct: 132 EQFMAQERERLTLTVLLNTLNQGTVSDEQAMQFVNARFAERTIRTSVFNPENYAKDVKID 191

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
                 F D         +       +       D + K    + E+ A  +  +     
Sbjct: 192 DASLQKFYDANKQTYALQQGVKYDYIVLSP---KDLLDKQTVSDAEVQAALKDAQANAKP 248

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL--PKDCNKLEKFASKI-HDVSIGK 233
              I  +L   P +  +      K   +      +    K  +  ++++       S G+
Sbjct: 249 TRKIAHILIEAPKSADEATRSKAKAQAEQVAKEAQAAPEKFADLAKQYSQDAGSAQSGGE 308

Query: 234 AQYL-LESDLHPQFQNLLKKS--QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA 290
                 +  L             +   +    T  G   + + D + +    AL   +  
Sbjct: 309 LGNFAKDGSLPAPALEEAAFKLGEGEVSGVVETDFGYHIVRVTDIQAIDV-AALTERVRR 367

Query: 291 QNTPTKIEKHEAEYVKKL 308
           +    K ++   +   +L
Sbjct: 368 ELQEKKAQQAYNKMRDEL 385



 Score = 38.1 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/199 (9%), Positives = 48/199 (24%), Gaps = 2/199 (1%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           L    + I F    + ++      + I   +  + IT   +   I     Q         
Sbjct: 14  LLLGAIGISFIGFGLANFDISTDKNYIV-RVGDQYITRDALEIAIRN-SEQSGGVADRNQ 71

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
             Q L+     ++  ++ GI      +    V        + +   +         +  +
Sbjct: 72  VFQILLNRAYLQEGAKRLGIVVSDAQIKQAVVDTPEFHDANGKFDPAKFQAFLQQTHLSE 131

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    Q      +             +  A +        R               ++  
Sbjct: 132 EQFMAQERERLTLTVLLNTLNQGTVSDEQAMQFVNARFAERTIRTSVFNPENYAKDVKID 191

Query: 196 GFVQKRIKDAEESRLRLPK 214
               ++  DA +    L +
Sbjct: 192 DASLQKFYDANKQTYALQQ 210


>gi|307261487|ref|ZP_07543156.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306868770|gb|EFN00578.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 625

 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/400 (7%), Positives = 85/400 (21%), Gaps = 89/400 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +      F L+    V                 +NG  IT    +   
Sbjct: 1   MIENMHERTKGPV--FKIIFALVSLSFVITGIGTGLVGGDTAAVKVNGTEITQQAFNAAK 58

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              +                      +  +  +  L+ E L +Q  ++  +   +  +  
Sbjct: 59  NRQQSVLNAQMGERFWDLLDTPEYAKQFNQSVLNGLVDEELLRQYAKELKLGISAEQIKS 118

Query: 105 FFVQ---HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE- 160
             V      ++   S + +   L   G+  + +   +    ++  + +      +   E 
Sbjct: 119 EIVNSSVFQQDGKFSNDLYQQTLRSNGLSADGYAAIVNEGMLFSQIQEGVIGSDFNVPEQ 178

Query: 161 --------------------------------MEIPANKQKMKNITVREYLIRTVLFSIP 188
                                            E+       K+  +    +     ++ 
Sbjct: 179 EALLAKLLLQKRQVRLANYSIAKEATNQAASAEELQKYYDAHKSELIEPEKLTVEYVTLT 238

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLP---------------------------KDCNKLEK 221
              + N   V          + +                             K+     +
Sbjct: 239 PTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHIQLANETDAKAVAEQVKNGADFAE 298

Query: 222 FASKIH-----DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK 275
            A             G   +         F+           +           I + ++
Sbjct: 299 LAKTKSTDKLSAAQGGDLGWAKAGTFPKAFEAAAASLQDGQVSAVVNVDGAYHIIKVLER 358

Query: 276 R--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           +   +     +K  ++       +    +   +++ + A 
Sbjct: 359 KAETVIPLEQVKDQITKTIRQELLLTEYSNIAREMANRAF 398


>gi|31789450|gb|AAP58564.1| conserved hypothetical protein [uncultured Acidobacteria bacterium]
          Length = 434

 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/292 (7%), Positives = 71/292 (24%), Gaps = 61/292 (20%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           IT+ ++ +       Q            + I +        K+              Q  
Sbjct: 120 ITEQEVDEFFKQPANQAK--------FDQFIND-----AKAKNPQLASGQVPEEQLKQVK 166

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ---SIWPDVVKNDFMLKYGNLEMEIPANK 167
           R  G      S  +          +  + ++    +     +     K    + EI A  
Sbjct: 167 RQLGQVLIGESKGIAAGSDKKRSVELQIKLEQARILAQTYAQEQLAEKMKATDAEIDAY- 225

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI- 226
                              I  +   +    + + ++  +            ++F++   
Sbjct: 226 -------------------IAQHPDLDAKQNRGKAEEVLKRVKAGEDFAKLAKEFSTDPG 266

Query: 227 HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK 285
                G   +  +  + P+F+           ++   +  G   I + +++    +   +
Sbjct: 267 SKEKGGDLGWFAQGAMVPEFEQAAFALKPGEVSDLVESSFGYHIIKVEERKTETKDGKPQ 326

Query: 286 AYL-----------------------SAQNTPTKIEKHEAEYVKKLRSNAII 314
             +                         +      E+ + + + ++   + +
Sbjct: 327 EQVHARHILIGDSAKSDNPFAPPMKGRDKARAAVEEEKQKKVLDEIVKRSHV 378


>gi|325268744|ref|ZP_08135372.1| hypothetical protein HMPREF9141_0581 [Prevotella multiformis DSM
           16608]
 gi|324988912|gb|EGC20867.1| hypothetical protein HMPREF9141_0581 [Prevotella multiformis DSM
           16608]
          Length = 474

 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/276 (9%), Positives = 77/276 (27%), Gaps = 36/276 (13%)

Query: 37  AMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGIT 96
             +     TING+ ++  +                 + +  ++ I E +      K  + 
Sbjct: 19  GQADPTLMTINGQPVSRSEFE-------YSYNKNNSDGVIDKKSIDEYVPLFIDYKLKVQ 71

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
              +          +                             Q I P  ++       
Sbjct: 72  AALDARLDTLSSFKK----------------------EFLGYRDQQIRPAFIR---DADV 106

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE-SRLRLPKD 215
                +I  + ++        +    +L  +     + +    +++ D+   +  +    
Sbjct: 107 EAEARKIYRDTRRQIEANGGLWHCAHILVGMRQRASKEEENAARQLADSLYTALQKGADF 166

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAIC 273
               +K+++      + G    L +     +F+  +       T+ P ++  G   I + 
Sbjct: 167 TELAKKYSTDTRSAKNGGDLPGLQKGQTVAEFEKAMLALKPGETSRPVLSPFGYHIIKMI 226

Query: 274 DKRDLGGEIALKAYLSAQNTPT-KIEKHEAEYVKKL 308
              +L    +L+A +          ++  ++ +  L
Sbjct: 227 GHEELPPYDSLRADIMQYIEMRGLRDQIISQRLDSL 262


>gi|145628054|ref|ZP_01783855.1| lipoprotein signal peptidase [Haemophilus influenzae 22.1-21]
 gi|144979829|gb|EDJ89488.1| lipoprotein signal peptidase [Haemophilus influenzae 22.1-21]
          Length = 622

 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/395 (11%), Positives = 110/395 (27%), Gaps = 84/395 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           +  K+    +  I       + + F +  +  Y  ++ +      +NGEVI+  D   R 
Sbjct: 2   LIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYL-FSSNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  AL---LKLQKINGE-------------LEKIAVQELIV-----------------ETLKK 87
                ++ Q+                 L +  V  +I                  E +K+
Sbjct: 61  NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
             +            N  + +  +   L+++ ++S L      +         + I P  
Sbjct: 121 AIVTDPNFQVKGKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVPAQ 180

Query: 148 VK-------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL---- 184
           VK                    D M K    + EI    +  +   V+   ++       
Sbjct: 181 VKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYIDLS 240

Query: 185 ------------------------FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
                                     +  +    Q   ++  K A E   +     +  +
Sbjct: 241 ADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQFANEQDAKVAYEELQKGANFADVAK 300

Query: 221 KFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL 278
             +  KI   + G   ++ E++L   F++          + P         + + +++  
Sbjct: 301 AKSLDKISGENGGNLGWVNENELPKAFEDAAAALQVGQYSQPINVDGNYHIVLVQERK-A 359

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                +KA ++     + +E       K+    A 
Sbjct: 360 QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAF 394


>gi|78189176|ref|YP_379514.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Chlorobium
           chlorochromatii CaD3]
 gi|78171375|gb|ABB28471.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Chlorobium
           chlorochromatii CaD3]
          Length = 697

 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 68/272 (25%), Gaps = 16/272 (5%)

Query: 50  VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
            ITD DI K     K Q    +  +        ET+    +  +  +             
Sbjct: 218 PITDDDIKKYYDEHKEQFRQEKPSRKV------ETVFFPLVPSAKDSAAVRQELEALRAD 271

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------NDFMLKYGNLEMEI 163
              +    +      D+    +    +          +           +  + +     
Sbjct: 272 FSKSQNDVDFVKVQSDRSNSANVVLTRADFSPLAGNAIFNTSSLAAGSLIGPFADNGEFR 331

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
                +++           +L             VQ+      +            ++++
Sbjct: 332 LLKVVRVQPAVQPIARASHILLRFNPANKAEIEKVQQLTMQIGQQLQAGVPFETLAKQYS 391

Query: 224 SKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAIC--DKRDLG 279
           +      + G   +     + P+F + +          P  TQ GV  I +   D+R L 
Sbjct: 392 ADPGSAENGGDLGWFSPDRMVPEFSKAVFNSRPGAIIGPIQTQFGVHIIKVTGFDQRALV 451

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
               ++   S+  +     +    +    +  
Sbjct: 452 ASEVVRTIRSSSESMESQRRRAMAFQVDAKEK 483



 Score = 41.6 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 2/68 (2%)

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIA--LKAYLSAQNTPTKIEKHEA 302
             + +   +      P  T  G   + +  K    G     +K  ++ Q    K ++   
Sbjct: 624 LVEAISGMTAGKLFKPVKTSNGYALVRLERKSIPEGFDPNAVKGMVAPQLLQAKHQQLFT 683

Query: 303 EYVKKLRS 310
           EY + LR+
Sbjct: 684 EYFQSLRN 691



 Score = 41.2 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/135 (8%), Positives = 38/135 (28%), Gaps = 6/135 (4%)

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
           V+ +I  +    +   ++ +    +++ +             +  +    +         
Sbjct: 455 VVRTIRSSSESMESQRRRAMAFQVDAKEKGFAKSAATAGVKVEESNEFTRRMAIRPLGYN 514

Query: 243 HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL---GGEIALKAYLSAQNTPTKIEK 299
                      + + ++   ++KG     +  K D      +   K  +  +    K   
Sbjct: 515 DKVATFAFSAKEGDISDVIESKKGFYVARLTAKHDEGYRSLDKDAKERIKQELLVEKKGA 574

Query: 300 HEAEYVKKLRSNAII 314
                 +KL + A +
Sbjct: 575 ALQ---QKLTAAAKV 586


>gi|73542615|ref|YP_297135.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
           JMP134]
 gi|72120028|gb|AAZ62291.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
           JMP134]
          Length = 272

 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/315 (11%), Positives = 76/315 (24%), Gaps = 58/315 (18%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           ++   +  ++ I     + +  S A       ++NG  I D  ++  +   +L     + 
Sbjct: 1   MQTNISRLIVTIALAFGLQAGLSVAH----AASVNGVAIPDSQVTATLQQSRL-ADTPQA 55

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
                Q+LI   L +QE  K         V                              
Sbjct: 56  RSAITQQLIARELFRQEAAKDKSLESRPDVQQAIR------------------------- 90

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                     +    +K+       +           +  +  +EY  R +         
Sbjct: 91  ----DARTAILTQAWLKDRIKPAPVSDADVKARYDAIVATLGDKEYKARLIQVGDEAGAK 146

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL---------LESDLH 243
                ++                    E  +      S G+  ++            +L 
Sbjct: 147 AALARIK-----------SGEDFAKVAEAVSLAPSKASGGQMDWISFKVPVQEGKTQNLP 195

Query: 244 -PQFQNLLKKSQNNTTN-PYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEK 299
            P  Q L        T  P         + + + R   +      K  +        +E+
Sbjct: 196 LPIAQALAVLPAGAVTATPIAWNNHYYLMKLDEVRPTQVPTFEQTKPGIQQALQAQALER 255

Query: 300 HEAEYVKKLRSNAII 314
                V +L + A +
Sbjct: 256 ATTALVTQLLAKAKV 270


>gi|167820136|ref|ZP_02451816.1| rotamase [Burkholderia pseudomallei 91]
          Length = 180

 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 3/104 (2%)

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN-NTTNPYVTQK 265
              ++         +F++     S G   ++ +  L    +N +        + P     
Sbjct: 72  NQLIQGASFGELAMRFSTDASRDSGGDIGWVAQGVLSDVARNEIDAIVKSGFSMPIRGSN 131

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
           G   + + DKRD+         +  Q            ++ +LR
Sbjct: 132 GYHLLYVRDKRDIVA--PSLDQIREQLIELARVDKFERHLCELR 173


>gi|29349254|ref|NP_812757.1| peptidyl-prolyl cis-trans isomerase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253570400|ref|ZP_04847809.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 1_1_6]
 gi|29341162|gb|AAO78951.1| peptidyl-prolyl cis-trans isomerase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251840781|gb|EES68863.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 1_1_6]
          Length = 514

 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/291 (9%), Positives = 75/291 (25%), Gaps = 37/291 (12%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           ++   + +    ++A    +   ING+ I   +                  K   +  I 
Sbjct: 6   LLLGWISLFGVLAFAQEDPVVMRINGKDIPRSEFEYSYRRHADGNGMKLSPKEYAEFFIQ 65

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
             LK +    +G+   S                   D         I     K+ +    
Sbjct: 66  SKLKVEAARAAGLDTTSAFRKQQEAYRTNLLRSYLLDDQEMDGNARILYQKMKENVRGGQ 125

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           +    +         +  ++    +          Y +      +   +L ++    KR 
Sbjct: 126 VQIQQIYKYLPQTITSRHLQEEQARMDS------IYQVIQNQPGVDFARLVDRFSDDKRC 179

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYV 262
           +  E  +     +                                     ++   + P+ 
Sbjct: 180 RWIESLQTTSEFEEAAFS-------------------------------LAKGEISKPFF 208

Query: 263 TQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           T +G+  + + D++++     +   L  +     ++K     V++L+    
Sbjct: 209 TPEGIHILKVIDRKEVPAYEVVSDSLLNRLRRQPLDKGTEAIVEQLKKEYQ 259


>gi|255690563|ref|ZP_05414238.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides
           finegoldii DSM 17565]
 gi|260624024|gb|EEX46895.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides
           finegoldii DSM 17565]
          Length = 460

 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/280 (11%), Positives = 84/280 (30%), Gaps = 13/280 (4%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI--ALLKLQ 66
           +  F+        L++     + +Y    +   +   +  E I   D+ +    AL   +
Sbjct: 1   MKKFVN-FRFVVTLVLAVFANVATYAQDNVVDEVVWVVGDEAILKSDVEEARMDALYNGR 59

Query: 67  KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY---FFVQHARNTGLSAEDFSSF 123
           +  G+   +  +E+ V+ L   + +   I      +                S E    +
Sbjct: 60  RFEGDPYCVIPEEIAVQKLFLHQAKLDSIEVSEAEIIQRVDMMTNMYIQQIGSKEKMEEY 119

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
            +K         +  A   +    ++   + +      E+    + +   ++     +  
Sbjct: 120 FNKTSTQIRETLRDNARDGLTVQKMQQKLVGEIKVTPAEVRRYFKDLPQDSIPYIPTQVE 179

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-----SKIHDVSIGKAQYLL 238
           +  I          ++   K   +   R+ K        A      K   +  G+  ++ 
Sbjct: 180 VQIITLQPKIPISEIEDVKKKLRDYTDRVTKGEIDFSTLARLYSEDKASAIKGGECGFMG 239

Query: 239 ESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKR 276
              + P + N+    +     +    ++ G   I + +KR
Sbjct: 240 RGMMDPAYANVAFSLQDPKKVSKIVESEFGYHIIQLIEKR 279


>gi|167923109|ref|ZP_02510200.1| putative rotamase [Burkholderia pseudomallei BCC215]
          Length = 190

 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 3/104 (2%)

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN-NTTNPYVTQK 265
              ++         +F++     S G   ++ +  L    +N +        + P     
Sbjct: 82  NQLIQGASFGELAMRFSTDASRDSGGDIGWVAQGVLSDVARNEIDAIVKSGFSMPIRGSN 141

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
           G   + + DKRD+         +  Q            ++ +LR
Sbjct: 142 GYHLLYVRDKRDIVA--PSLDQIREQLIELARVDKFERHLCELR 183


>gi|212212179|ref|YP_002303115.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuG_Q212]
 gi|212010589|gb|ACJ17970.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuG_Q212]
          Length = 522

 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/320 (10%), Positives = 82/320 (25%), Gaps = 41/320 (12%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSY-KSWAMSSRIRTTINGEVITDGDISKR 59
           M   +   +  +I  L    V + F +  +  Y +S    ++    +NGE I++ +++  
Sbjct: 1   MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKISENELNVV 60

Query: 60  IALLK-----------LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
              L+           +      L++ A+Q LI+  +     EK G       +N     
Sbjct: 61  FQRLQRAYSLQRGQTLVSAKAEALKEEALQNLIMNHVLLDSAEKMGFNISPAEINQIITV 120

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
                         F            Q++A   +    +              +P   +
Sbjct: 121 LPAFQENGKFSPQRFQQFLYENSLTSAQFVAQ--LLQVFLIQQVEKGITGSAFVLPNEIK 178

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +  +    R ++ S      +++   +      ++ R            +      
Sbjct: 179 NNYELINQARDFRYMIISRAPFLKESKVTPEMIADYYQKHRESFKAPEKLSIAYLLLS-- 236

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
                             +  +  S +                    R+      +K  +
Sbjct: 237 --------------PEMIRQQVSVSDHEIKQ-----------YYESNREGKSFNQVKDQI 271

Query: 289 SAQNTPTKIEKHEAEYVKKL 308
                  KI     +   +L
Sbjct: 272 KQSLLQQKINTLLTKKSDQL 291


>gi|171322244|ref|ZP_02911086.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MEX-5]
 gi|171092428|gb|EDT37778.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MEX-5]
          Length = 644

 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/273 (8%), Positives = 59/273 (21%), Gaps = 22/273 (8%)

Query: 53  DGDISKRIALLKLQ-KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
             D+ +   LL  Q     + ++     L ++ +    +  +                 R
Sbjct: 133 SIDVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVASAFTPKGPAQRLSELAAQQR 192

Query: 112 NTGLSAEDFSSFLDKQGIGDNH---FKQYLAIQSIWPDVVKNDF--------MLKYGNLE 160
                    S +  K    D     +          P+     +               +
Sbjct: 193 EVQALVLTTSDYAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVYSPAAAGASAQPTD 252

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            +I             E  +R     I      +          AE+    +    ++  
Sbjct: 253 ADIKKFYDDNPTHFRSEAQVRVSHIFIAAASDASAADKAAAKAKAEQLLADVKAHPDQFA 312

Query: 221 KFA-----SKIHDVSIGKAQYLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAI 272
           + A             G   ++                   Q + +    +  G   +  
Sbjct: 313 QIAQKNSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFALKQGDVSGVVQSDLGFHILKA 372

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAE 303
            + +   +     +K  ++ Q          ++
Sbjct: 373 TEVKPSLVKPFADVKDQIAVQLKQQYAATAFSD 405



 Score = 44.7 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/220 (9%), Positives = 54/220 (24%), Gaps = 15/220 (6%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN-------------GELE 73
            V I  ++ +   S     ING  IT  +          Q                 E  
Sbjct: 26  FVGIQGFRGFFDDSANVAAINGHKITRVEFDGAFRQQIDQARQALGGQFDIKAFDTPEHR 85

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV--QHARNTGLSAEDFSSFLDKQGIGD 131
           K  +  LI + +   E ++  +T   N V    +      +              Q +  
Sbjct: 86  KQVLDGLIQQRVLADETQRLHLTASDNAVRDALMNDPMIASLKKPDGSIDVERYAQLLSF 145

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                    + +   +                    Q++  +  ++  ++ ++ +  D  
Sbjct: 146 QGMTPEQYQERVRYSLALQQIPASIVASAFTPKGPAQRLSELAAQQREVQALVLTTSDYA 205

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
            + Q    +     +  +           ++       + 
Sbjct: 206 AKVQPTDAQLTAYYDAHKQSFATPETATIQYLVYSPAAAG 245


>gi|76819072|ref|YP_335569.1| putative rotamase [Burkholderia pseudomallei 1710b]
 gi|254186693|ref|ZP_04893209.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|76583545|gb|ABA53019.1| putative rotamase [Burkholderia pseudomallei 1710b]
 gi|157934377|gb|EDO90047.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei Pasteur 52237]
          Length = 244

 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 3/104 (2%)

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN-NTTNPYVTQK 265
              ++         +F++     S G   ++ +  L    +N +        + P     
Sbjct: 136 NQLIQGASFGELAMRFSTDASRDSGGDIGWVAQGVLSDVARNEIDAIVKSGFSMPIRGSN 195

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
           G   + + DKRD+         +  Q            ++ +LR
Sbjct: 196 GYHLLYVRDKRDIVA--PSLDQIREQLIELARVDKFERHLCELR 237


>gi|60683327|ref|YP_213471.1| putative exported isomerase [Bacteroides fragilis NCTC 9343]
 gi|60494761|emb|CAH09567.1| putative exported isomerase [Bacteroides fragilis NCTC 9343]
          Length = 517

 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/297 (11%), Positives = 76/297 (25%), Gaps = 41/297 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    V  + C+    +    A    +   ING+ IT  +  +                 
Sbjct: 1   MKKILVGTLTCLFG--AIAGHAQQDPVLMRINGQDITRSEFER----------------- 41

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
                                 +  +         R   L  +        Q  G +   
Sbjct: 42  ------------------FCHRNKPSGIAGKETLKRCADLFVDMKLKLSAAQKAGLDTVS 83

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
            +      +   +   ++      E        +MK  +    +    +F          
Sbjct: 84  DFRTEMENYHRALSRSYLTDSATDEAYAKKLYDQMKTRSAAGEVKVMRIFRYLPQTALPH 143

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG-KAQYLLESDLHPQFQNLLKKSQ 254
              + +I       +         +   +K  D        +L  S      +       
Sbjct: 144 HLREAQILMDSLYHVLETHPDIDFKTLVNKYSDDKKEFWMGWLQTSQ--EFEEVAFSLKD 201

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT-KIEKHEAEYVKKLRS 310
              + P+ T KG++ I +  +R++     ++  L  + +     +K    +V KL+S
Sbjct: 202 GEYSKPFFTPKGIQIIKVTGRREIPPFEQIRGELIHKLSRRPGTDKEIELWVNKLKS 258


>gi|160882392|ref|ZP_02063395.1| hypothetical protein BACOVA_00341 [Bacteroides ovatus ATCC 8483]
 gi|237719065|ref|ZP_04549546.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_2_4]
 gi|260172001|ref|ZP_05758413.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D2]
 gi|293369504|ref|ZP_06616083.1| PPIC-type PPIASE domain protein [Bacteroides ovatus SD CMC 3f]
 gi|299148148|ref|ZP_07041210.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides sp.
           3_1_23]
 gi|315920314|ref|ZP_07916554.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156112205|gb|EDO13950.1| hypothetical protein BACOVA_00341 [Bacteroides ovatus ATCC 8483]
 gi|229451444|gb|EEO57235.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_2_4]
 gi|292635389|gb|EFF53902.1| PPIC-type PPIASE domain protein [Bacteroides ovatus SD CMC 3f]
 gi|298512909|gb|EFI36796.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides sp.
           3_1_23]
 gi|313694189|gb|EFS31024.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 460

 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/312 (10%), Positives = 91/312 (29%), Gaps = 18/312 (5%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI--ALLKLQ 66
           +  F+        L++     + +Y    +   +   +  E I   D+ +    AL   +
Sbjct: 1   MKKFVN-FRFVVTLVLAIFANVATYAQDNVVDEVVWVVGDEAILKSDVEEARMDALYNGR 59

Query: 67  KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
           +  G+   +  +E+ V+ L   + +   I      +                      + 
Sbjct: 60  RFEGDPYCVIPEEIAVQKLFLHQAKLDSIEVSEAEIIQRVDMMTNMYIQQIGSREKMEEY 119

Query: 127 QGIGDNHFKQYLAIQS---IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                   ++ L   +   +    ++            E+    + +   ++     +  
Sbjct: 120 FNKTSTQIRETLRDNARDGLTVQKMQQKLAGDIKVTPAEVRRYFKDLPQDSIPYIPTQVE 179

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-----SKIHDVSIGKAQYLL 238
           +  I          ++   +   +   R+ K        A      K   +  G+  ++ 
Sbjct: 180 VQIITLQPKIPVSEIEDVKRTLRDYTDRVTKGEIDFSTLARLYSEDKASAIKGGECGFMG 239

Query: 239 ESDLHPQFQNLLKKSQN--NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK 296
              + P + N+    Q+    +    ++ G   I + +KR   G+     ++     P  
Sbjct: 240 RGMMDPAYANVAFSLQDPKKVSKIVESEFGFHIIQLIEKR---GDRVNTRHIL--LRPKV 294

Query: 297 IEKHEAEYVKKL 308
            EK   E   +L
Sbjct: 295 SEKELTEACARL 306


>gi|254521282|ref|ZP_05133337.1| peptidylprolyl isomerase [Stenotrophomonas sp. SKA14]
 gi|219718873|gb|EED37398.1| peptidylprolyl isomerase [Stenotrophomonas sp. SKA14]
          Length = 651

 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/194 (9%), Positives = 43/194 (22%), Gaps = 4/194 (2%)

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
             D +   D Q             Q+    +   +                 + +    +
Sbjct: 222 PADTAPVTDAQIKQWYDSHGKDFRQAESVSLEYVEINGGTLPAPAAADEATLRKRYEDEK 281

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQ 235
                          +   G   K  K A E++          +  +         G   
Sbjct: 282 AKFTSPEQRQAAHILITGDGAEAKANKIAAEAKAAGADFAALAKANSEDPGSKAQGGDLG 341

Query: 236 YLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP 294
           ++    +   F++        +   P  T  G   I +   R   G+      +      
Sbjct: 342 WVERGAMVKPFEDALFAAKAGDVIGPVKTDFGYHIIKVAAVRGGQGKS--FEEVRDTLAA 399

Query: 295 TKIEKHEAEYVKKL 308
            +++        +L
Sbjct: 400 EQLKADGERGFNEL 413



 Score = 49.3 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/303 (9%), Positives = 79/303 (26%), Gaps = 40/303 (13%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTI-------------- 46
           M  K+    S +I  +    ++I F  V   SY     +      +              
Sbjct: 1   MLQKLRDKTSGWIVTVILGLLMIPFLFVIDNSYLGGVGAQN-VAKVSAPPTWWRSAPSWW 59

Query: 47  ------NGEVITDGDISKRIALLKLQKINGELEK-------------IAVQELIVETLKK 87
                     I+  D   R    ++++   + E                + +LI E + +
Sbjct: 60  PVRMLWQHHEISAQDFRTRFEQERMRERQQQGENFDPRAFESTENKLAVLDQLIDEQVVR 119

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
              E++G+      V  +            +    F +                + + ++
Sbjct: 120 LVGEQAGVVIGDGAVREYIATIPAF----LDSNGKFNENNYRLALAGGNPPRTPTQFQEL 175

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           V+           ++      + +   + + L  T    +                  ++
Sbjct: 176 VRESLQQSVIPSGLQNSGFVTQSETERLLKLLGETRDVELAALPEVPADTAPVTDAQIKQ 235

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGV 267
                 KD  + E  + +  +++ G       +      +   +  +   T+P   Q   
Sbjct: 236 WYDSHGKDFRQAESVSLEYVEINGGTLP-APAAADEATLRKRYEDEKAKFTSPEQRQAA- 293

Query: 268 EYI 270
             +
Sbjct: 294 HIL 296


>gi|53715358|ref|YP_101350.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis YCH46]
 gi|52218223|dbj|BAD50816.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis YCH46]
          Length = 517

 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/297 (10%), Positives = 74/297 (24%), Gaps = 41/297 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    V  + C+    +    A    +   ING+ IT  +  +                 
Sbjct: 1   MKKILVGTLTCLFG--AIAGHAQQDPVLMRINGQDITRSEFER----------------- 41

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
                                 +  +         R   L  +        Q    +   
Sbjct: 42  ------------------FCHRNKPSGIAGKETLKRCADLFVDMKLKLSAAQKARLDTVS 83

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
            +      +   +   ++      E        +MK  +    +    +F          
Sbjct: 84  DFRTEMENYHRALSRSYLTDSATDEAYAKKLYDQMKTRSAAGEVKVMRIFRYLPQTALPH 143

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG-KAQYLLESDLHPQFQNLLKKSQ 254
              + +        +         +   +K  D        +L  S      +       
Sbjct: 144 HLREAQNLMDSLYHVLEAHPDIDFKTLVNKYSDDKKEFWMGWLQTSQ--EFEEVAFSLKD 201

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT-KIEKHEAEYVKKLRS 310
              + P+ T KG++ + +  +R++     ++  L  + +     +K    +V KL+S
Sbjct: 202 GEYSKPFFTPKGIQIVKVTGRREIPPFEQIRGELIHKLSRRPGTDKEIELWVNKLKS 258


>gi|32033981|ref|ZP_00134237.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208477|ref|YP_001053702.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae L20]
 gi|126097269|gb|ABN74097.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 625

 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/400 (7%), Positives = 85/400 (21%), Gaps = 89/400 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +      F L+    V                 +NG  IT    +   
Sbjct: 1   MIENMHERTKGPV--FKIIFALVSLSFVITGIGTGLVGGDTAAVKVNGTEITQQAFNAAK 58

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              +                      +  +  +  L+ E L +Q  ++  +   +  +  
Sbjct: 59  NRQQSVLNAQMGERFWDLLDTPEYAKQFNQSVLNGLVDEELLRQYAKELKLGISAEQIKS 118

Query: 105 FFVQ---HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE- 160
             V      ++   S + +   L   G+  + +   +    ++  + +      +   E 
Sbjct: 119 EIVNSSIFQQDGKFSNDLYQQTLRSNGLSADGYAAIVNEGMLFSQIQEGVIGSDFNVPEQ 178

Query: 161 --------------------------------MEIPANKQKMKNITVREYLIRTVLFSIP 188
                                            E+       K+  +    +     ++ 
Sbjct: 179 EALLAKLLLQKRQVRLANYSIAKEATNQAASAEELQKYYDAHKSELIEPEKLTVEYVTLT 238

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLP---------------------------KDCNKLEK 221
              + N   V          + +                             K+     +
Sbjct: 239 PTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHIQLANETDAKAVAEQVKNGADFAE 298

Query: 222 FASKIH-----DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK 275
            A             G   +         F+           +           I + ++
Sbjct: 299 LAKTKSTDKLSAAQGGDLGWAKAGTFPKAFEAAAASLQDGQVSAVVNVDGAYHIIKVLER 358

Query: 276 R--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           +   +     +K  ++       +    +   +++ + A 
Sbjct: 359 KAETVIPLEQVKDQITKTIRQELLLTEYSNIAREMANRAF 398


>gi|297539447|ref|YP_003675216.1| EpsD family peptidyl-prolyl cis-trans isomerase [Methylotenera sp.
           301]
 gi|297258794|gb|ADI30639.1| peptidyl-prolyl cis-trans isomerase, EpsD family [Methylotenera sp.
           301]
          Length = 316

 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/306 (11%), Positives = 80/306 (26%), Gaps = 42/306 (13%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK--LQKINGE 71
           K+L    V+I   +           +S+I   +NG  IT   I   +   +    +   E
Sbjct: 3   KILKLSLVVIFCNLAACGKGSEKVANSQIAAKVNGVEITTHQIDSVMKSAQNVTAENVSE 62

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
             K A+ +LI + L   +  K  +    + +                             
Sbjct: 63  FRKKALDKLIDQQLVLDKASKESLDRTPDVILEI-------------------------- 96

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
               +    + +    +K          + E      +   +  +  +          + 
Sbjct: 97  ----EAAKKEILARAYLKKMLANSSEINDSEFRKYYDEHTELFSKRRIYNL-QDISTQSN 151

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
            Q    +++ +   +           K  KF+S                 L       ++
Sbjct: 152 EQTLELLKENVNAQKSMMDIAESLKAKGIKFSSGSF--------TRPAEQLPLDILPKMQ 203

Query: 252 KSQNNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
             ++     + +      I +    +           +      T+ ++   + +KK R 
Sbjct: 204 MLKDGDMFVWQSGDIAHAIKLTSIEESPVGLTEATPMIKNYFINTRGKQIVEDKIKKFRQ 263

Query: 311 NAIIHY 316
            A I Y
Sbjct: 264 EAKIEY 269


>gi|172060885|ref|YP_001808537.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MC40-6]
 gi|171993402|gb|ACB64321.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MC40-6]
          Length = 644

 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/273 (8%), Positives = 59/273 (21%), Gaps = 22/273 (8%)

Query: 53  DGDISKRIALLKLQ-KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
             D+ +   LL  Q     + ++     L ++ +    +  +                 R
Sbjct: 133 SIDVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVASAFTPKGPAQRLSELAAQQR 192

Query: 112 NTGLSAEDFSSFLDKQGIGDNH---FKQYLAIQSIWPDVVKNDF--------MLKYGNLE 160
                    S +  K    D     +          P+     +               +
Sbjct: 193 EVQALVLKTSDYAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVYSPAAAAASAQPTD 252

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            +I             E  +R     I      +          AE+    +    ++  
Sbjct: 253 ADIKKFYDDNPTHFRSEAQVRVSHIFIAAASDASAADKAAAKTKAEQLLADVKAHPDQFA 312

Query: 221 KFA-----SKIHDVSIGKAQYLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAI 272
           + A             G   ++                   Q + +    +  G   +  
Sbjct: 313 QIAQKNSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFALKQGDVSGVVQSDLGFHILKA 372

Query: 273 CDKRD--LGGEIALKAYLSAQNTPTKIEKHEAE 303
            + +   +     +K  ++ Q       K   +
Sbjct: 373 TEVKPSVVKPFADVKDQIAVQLKQQYAAKAFTD 405



 Score = 45.4 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/211 (9%), Positives = 52/211 (24%), Gaps = 15/211 (7%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN-------------GELE 73
            V I  ++ +   S     +NG  IT  +          Q                 E  
Sbjct: 26  FVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAFRQQIDQARQALGGQFDIKAFDTPEHR 85

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV--QHARNTGLSAEDFSSFLDKQGIGD 131
           K  +  LI + +   E ++  +T   N V    +      +              Q +  
Sbjct: 86  KQVLDGLIQQRVLADETQRLHLTASDNAVRDALMSDPMIASLKKPDGSIDVERYAQLLSF 145

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                    + +   +                    Q++  +  ++  ++ ++    D  
Sbjct: 146 QGMTPEQYQERVRYSLALQQIPASIVASAFTPKGPAQRLSELAAQQREVQALVLKTSDYA 205

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            + Q    +     +  +           ++
Sbjct: 206 AKVQPTDAQLTAYYDAHKQSFATPETATIQY 236


>gi|311070719|ref|YP_003975642.1| hypothetical protein BATR1942_18970 [Bacillus atrophaeus 1942]
 gi|310871236|gb|ADP34711.1| hypothetical protein BATR1942_18970 [Bacillus atrophaeus 1942]
          Length = 306

 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 103/329 (31%), Gaps = 41/329 (12%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSY------KSWAMSSRIRTTINGEVITDG 54
           M  K    L+   + + T  V ++     +V+Y       +   S     TI  + +T  
Sbjct: 1   MIEKKGLKLNLKSRTIWTIIVGVLLVSCIVVAYKLTKSQAAATQSQESIATIGDKSVTRE 60

Query: 55  DISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
           D  K++          E  K  ++++I   + +Q  +K+ +    + +   F+       
Sbjct: 61  DWLKKM--------EDEYGKATLEDMINVRVVEQLAKKNKLKVSDSDIEREFLLIKAVNN 112

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
              ED            +  ++    Q  +  +++          E E+ +   K K + 
Sbjct: 113 SFYEDE-----------HTTEKEWKDQIRYNILLEELLTKDIDISEKEMKSFYTKNKELY 161

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKA 234
             +   R     + D +  N+           + +     +    E+   +      G  
Sbjct: 162 QFDDSYRIRHIVVKDQEEANRVLK--------DLKGGSSFEAVAAERSTDRYTSPYGGDL 213

Query: 235 QYLLESDLH----PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYL 288
            ++ E+          +    K    +T P    KG   I + +K +        +K  +
Sbjct: 214 GFVTEAQDSIPAAYITEARTLKENEWSTEPIKVSKGYAIIQLKEKLNARTFTYDEVKDQI 273

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
             Q    ++       VK L   A + ++
Sbjct: 274 KRQIAMDQLGDKAT--VKTLWKEADVSWF 300


>gi|325845187|ref|ZP_08168495.1| putative foldase protein PrsA [Turicibacter sp. HGF1]
 gi|325488783|gb|EGC91184.1| putative foldase protein PrsA [Turicibacter sp. HGF1]
          Length = 549

 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/251 (10%), Positives = 70/251 (27%), Gaps = 9/251 (3%)

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
               ++  V++L  E +    +       D++ +   +    +      ++F        
Sbjct: 241 KTNEKEYTVEDLYNELVPAYGLSTGISILDTHLLEDKYSYDEKEVKALIDEFKVNWGSNY 300

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +  + I+       +       +    A            Y       S  
Sbjct: 301 YAYMAQYGLMNDEEIFN------YFKLAALQDAAFAAEYPITDEQLQAAYNEYKPNISAR 354

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
              ++++   +  I   + +  +  K     ++++      + G      +  +  +F+N
Sbjct: 355 HILVEDEETAKDLIAQLDAAEDKEAKFEELAKEYSKDGSASNGGDLGSFGKGQMVSEFEN 414

Query: 249 LLKK-SQNNTT-NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK-HEAEYV 305
                +    T  P  TQ G   I    + +      LK  L       +  +      +
Sbjct: 415 AAFALNVGEYTEEPVKTQYGYHVIYKYAEDEKPSFDDLKDELETTIRSEEYTQLKLEAIL 474

Query: 306 KKLRSNAIIHY 316
            K R+ A + +
Sbjct: 475 IKYRTEANVKF 485


>gi|296271661|ref|YP_003654292.1| SurA domain-containing protein [Arcobacter nitrofigilis DSM 7299]
 gi|296095836|gb|ADG91786.1| SurA domain protein [Arcobacter nitrofigilis DSM 7299]
          Length = 283

 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/304 (16%), Positives = 94/304 (30%), Gaps = 29/304 (9%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K +  +   ++F ++   ++ +  M   +  T+N E IT  DI++++A   L+      +
Sbjct: 4   KQIKLFAKRVLFTLMATFTFSNAQMIDALALTVNDEPITTSDINQKMAETHLK------K 57

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
             AV ELI + L KQE+EK  IT D   VN +  + A + G+    F S L ++    + 
Sbjct: 58  ADAVSELIDQILYKQELEKQNITVDIFEVNDYLEKLAASNGMDLYTFKSILRQKNKNFDE 117

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
           F+     + +   +              E                    V      NK  
Sbjct: 118 FEAQTKKELMKKKLAAKLIRGNIPVATEEDLKIYYDNNKSMFTTASKINVTQYASKNKRS 177

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS 253
                Q  +    +   +                                     L    
Sbjct: 178 LIIMSQNPMALLNDVVKKDFTLEQDKLN---------------------PQLKFLLNDTK 216

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGG--EIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             + T  +   +      +  K  +       +K  +       + +K   EY +KL+  
Sbjct: 217 DGSFTPIFTADRTFVMFFVKSKSGVTTLKFDEVKEKIFNALMGEREQKFLKEYFEKLKLT 276

Query: 312 AIIH 315
           A I 
Sbjct: 277 ADIK 280


>gi|163781566|ref|ZP_02176566.1| hypothetical protein HG1285_01748 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882786|gb|EDP76290.1| hypothetical protein HG1285_01748 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 275

 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 77/290 (26%), Gaps = 44/290 (15%)

Query: 38  MSSRIRTTINGEVITDGDIS-------KRIALLKLQKINGELEKIAVQELIVETLKKQEI 90
               I   +   VIT G+ +       K +     ++   E  K  +   I   + +   
Sbjct: 16  AGQGIVAKVGDRVITKGEFNSLFSFYWKEMLHFSPKRPTFEDRKRFLFRYIKGLIVEDLA 75

Query: 91  EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
              GI  D   V        R                   D     +  ++ +    ++ 
Sbjct: 76  PDMGIRVDDGEVLRRLRSWGRRN----------------PDPRLVMFARMELLLER-IER 118

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
             + +    + EI A     K        ++ +           + +   R       R 
Sbjct: 119 RLVRETSVSDGEIEAYYILNKREFYYPNQVKLLRVVADSRDKAYRVYKALRSGGNVPRRE 178

Query: 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEY 269
            +                  +G+ ++     L  + +           + P   + G   
Sbjct: 179 GIV-----------------VGRERWYSLQALPKRVKRRLYPYRVGVVSRPIKLETGYLI 221

Query: 270 IAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           + I DKR   +     +K  +  +    K ++   E+ K+   +  +  Y
Sbjct: 222 LKITDKRKSGVMPLSEVKEKVKRKLLRIKRQEVLREWFKEALKSYRLEVY 271


>gi|120612784|ref|YP_972462.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
           AAC00-1]
 gi|120591248|gb|ABM34688.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
           AAC00-1]
          Length = 299

 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 10/170 (5%), Positives = 41/170 (24%), Gaps = 5/170 (2%)

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
                     +       + +       + +   +              + +I+  E+  
Sbjct: 109 AKVDKDNMLSDSAAEGLARNIYKAKPERFKVPEQVQVRHILIAGKGADSRAQIEKIEQEL 168

Query: 210 LRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKG 266
                     ++ +  K      G   +     + P+F             +    ++ G
Sbjct: 169 KGGADFAQLAKERSADKGSAAKGGDLGFFEAGKMVPEFDKAAFALTKPGELSGIVESKFG 228

Query: 267 VEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              + +  +          +++ L  +      ++      + ++  A I
Sbjct: 229 YHILQLEGRHAPRTRSFDEVRSELMQEVRANVQQEARVADAQAMQKEAKI 278


>gi|91783524|ref|YP_558730.1| putative PpiC-type peptidyl-prolyl cis- trans isomerase
           [Burkholderia xenovorans LB400]
 gi|91687478|gb|ABE30678.1| Putative PpiC-type peptidyl-prolyl cis- trans isomerase
           [Burkholderia xenovorans LB400]
          Length = 645

 Score = 70.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/263 (9%), Positives = 67/263 (25%), Gaps = 17/263 (6%)

Query: 52  TDGDISKRIAL-LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           T     +R+   +  Q++   ++  A      +TL +   E +    +   + +    +A
Sbjct: 149 TPDQYDERVRYSIATQQLPASIQGSAFTS---KTLAQHLTELAEQQREVQGIAFHPRDYA 205

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                +     ++ D                 +                + ++       
Sbjct: 206 AKVQPTDAQLQAYYDAHRNDFATPATATIQYLVMSP---ATLAASVQPGDADLKKYYDDN 262

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH--- 227
                 E  +R     I   K  +     K  + AEE   ++    ++  + A +     
Sbjct: 263 IAHYRVEGQVRASHILIAAPKDASAADKAKAKQKAEELLAQIKAHPDQFAQIAQQNSQDP 322

Query: 228 --DVSIGKAQYLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL--GG 280
                 G   Y     +         +    ++  +    T  G   + + D +      
Sbjct: 323 GSASKGGDLGYFGRGMIAGGQAFDDAVFALKKDEVSGIVQTDFGYHIVKVTDVKPAVTKP 382

Query: 281 EIALKAYLSAQNTPTKIEKHEAE 303
              +K  +S         K   +
Sbjct: 383 FDEVKDQISKDLKTQLASKAFTD 405



 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/228 (8%), Positives = 56/228 (24%), Gaps = 15/228 (6%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN 69
              +  +    ++     V I  ++ +   S    ++NG  IT  +    +     +   
Sbjct: 9   KRLMMFMLILVIVPGLGFVGIQGFRGFFDESANVASVNGHKITRAEYDDAMRQQLDRARQ 68

Query: 70  -------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQHARNTG 114
                         E     +  LI + +   E ++  +T   + V           +  
Sbjct: 69  MLGAQFDMKSFDTPERRSQMLDGLIEQRVLADETQRLHLTASDDAVRRVLLNDPVISSLK 128

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
                      KQ +           + +   +                    Q +  + 
Sbjct: 129 NPDGTIDVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPASIQGSAFTSKTLAQHLTELA 188

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            ++  ++ + F   D   + Q    +     +  R           ++
Sbjct: 189 EQQREVQGIAFHPRDYAAKVQPTDAQLQAYYDAHRNDFATPATATIQY 236


>gi|330507465|ref|YP_004383893.1| peptidyl-prolyl cis-trans isomerase C [Methanosaeta concilii GP-6]
 gi|328928273|gb|AEB68075.1| Peptidyl-prolyl cis-trans isomerase C [Methanosaeta concilii GP-6]
          Length = 94

 Score = 70.5 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 1/83 (1%)

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-S 253
               +K ++  E              K++      S G   +  +  + P+F+    +  
Sbjct: 12  CKTEKKALEVKELLASGQESFAQMARKYSQCPSGKSGGDLGWFGKGRMVPEFEKAAFEGE 71

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
           +     P  +Q G   I + DK+
Sbjct: 72  KGKIIGPVKSQFGYHLIRVLDKK 94


>gi|265767845|ref|ZP_06095377.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_16]
 gi|263252517|gb|EEZ24045.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_16]
          Length = 517

 Score = 70.5 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/297 (11%), Positives = 75/297 (25%), Gaps = 41/297 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    V  + C+    +    A    +   ING+ IT  +  +                 
Sbjct: 1   MKKILVGTLTCLFG--AIAGHAQQDPVLMRINGQDITRSEFER----------------- 41

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
                                 +  +         R   L  +        Q  G +   
Sbjct: 42  ------------------FCHRNKPSGIAGKETLKRCADLFVDMKLKLSAAQKAGLDTVS 83

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
            +      +   +   ++      E        +MK  +    +    +F          
Sbjct: 84  DFRTEMENYHRALSRSYLTDSATDEAYAKKLYDQMKTRSAAGEVKVMRIFRYLPQTALPH 143

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG-KAQYLLESDLHPQFQNLLKKSQ 254
              + +I       +             +K  D        +L  S      +       
Sbjct: 144 HLREAQILMDSLYHVLETHPDIDFRTLVNKYSDDKKEFWMGWLQTSQ--EFEEVAFSLKD 201

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT-KIEKHEAEYVKKLRS 310
              + P+ T KG++ I +  +R++     ++  L  + +     +K    +V KL+S
Sbjct: 202 GEYSKPFFTPKGIQIIKVTGRREIPPFEQIRGELIHKLSRRPGTDKEIELWVNKLKS 258


>gi|254301623|ref|ZP_04969067.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia pseudomallei
           406e]
 gi|157810736|gb|EDO87906.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia pseudomallei
           406e]
          Length = 220

 Score = 70.5 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 3/104 (2%)

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN-NTTNPYVTQK 265
              ++         +F++     S G   ++ +  L    +N +        + P     
Sbjct: 112 NQLIQGASFGELAMRFSTDASRDSGGDIGWVAQGVLSDVARNEIDAIVKSGFSMPIRGSN 171

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
           G   + + DKRD+         +  Q            ++ +LR
Sbjct: 172 GYHLLYVRDKRDIVA--PSLDQIREQLIELARVDKFERHLCELR 213


>gi|124516599|gb|EAY58107.1| probable peptidil-prolyl cis-trans isomerase [Leptospirillum
           rubarum]
          Length = 289

 Score = 70.5 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/307 (10%), Positives = 76/307 (24%), Gaps = 50/307 (16%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL-QKINGEL 72
           K L    + ++  ++      S  +   +   +    I+ GD+ K++  + L    +  +
Sbjct: 4   KPLKYASLFLLPILLSSCHKSSAPLPDSVLAKVGNTTISQGDLKKKLDSMGLASSKDPNV 63

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               + +++  +L   +  K G+               +    +          +    +
Sbjct: 64  TSELLNQMVDNSLLAMQARKEGLDKTPEFKKKMHAYETKLLRKALLKKDVDDKVKVTDSD 123

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
               Y   Q                                      +R V+F       
Sbjct: 124 IVNYYNKHQ----------------------------KDIKQPGYVDVRQVVFPD----- 150

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLK 251
                  KR     + +    K     +           G    + E  + P+F      
Sbjct: 151 ---EKTAKRDFPLLKKKGGFKKVTKMFK----------GGPVGKIYEGTVPPKFVSFFFG 197

Query: 252 KSQNNTTNPYVTQKGVEYIAICD--KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
             + + T P   + G+ Y  I    K         +  +       + +      V  LR
Sbjct: 198 VPEGSITGPIPLKDGIHYFKIDRSVKGVQLTLDQAREGIRNYLRNRQNKTIYQTLVNHLR 257

Query: 310 SNAIIHY 316
           S   +  
Sbjct: 258 STTTVQI 264


>gi|312879532|ref|ZP_07739332.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aminomonas
           paucivorans DSM 12260]
 gi|310782823|gb|EFQ23221.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aminomonas
           paucivorans DSM 12260]
          Length = 297

 Score = 70.5 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/167 (10%), Positives = 39/167 (23%), Gaps = 6/167 (3%)

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG--FVQKRIKD 204
           +                            R Y      F   +           +   + 
Sbjct: 111 LRWQRIRTLSQAYMERAAGAWDLGDQTLKRYYDAHRDQFVQAEAVHVRHILTEDEASARK 170

Query: 205 AEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNN-TTNPYV 262
           A  + L          + +         G  +++        F++L+   + +    P  
Sbjct: 171 ALLAVLGGADFAKTAAEQSRDKATAERGGDLEWVERGQTPKAFEDLVFSLRKDAVGGPVK 230

Query: 263 TQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
           T  G   + + +KR              +        +  E +KKLR
Sbjct: 231 TDFGWHVVQVLEKRAARA--LSFEEAKGEVAQRLQRSYLEETLKKLR 275


>gi|326567917|gb|EGE18014.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis BC1]
          Length = 360

 Score = 70.5 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/190 (10%), Positives = 58/190 (30%), Gaps = 8/190 (4%)

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI-RTVLFSIPDNK 191
                   ++    +++   + K  +                    +  R +L + P  +
Sbjct: 156 ERAWLENEEATIAKLLEQKVIAKSPDKASCQNYYHANQVEFVSMPIMTLRHILLACPPQE 215

Query: 192 LQNQGFVQKRIKDAEESRL----RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
            + +  ++K+ +   +       R         ++++       G+   L +    P+F+
Sbjct: 216 GEERIELKKQARQLIDRLNQSHNRDSDFIEFACRYSACPSKDDGGELGVLQKGSTVPEFE 275

Query: 248 NLLKKSQNNTT-NPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEY 304
           + +       + NP  T+ G+  I +  K++            +              +Y
Sbjct: 276 SAVFALPVGISINPIETRYGIHVIEVLQKQEGRQLSFEEAYPIIENHLKQQSFHHSLCDY 335

Query: 305 VKKLRSNAII 314
           + +L   A I
Sbjct: 336 LFELSQKADI 345


>gi|121594044|ref|YP_985940.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42]
 gi|120606124|gb|ABM41864.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42]
          Length = 261

 Score = 70.1 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/305 (11%), Positives = 87/305 (28%), Gaps = 49/305 (16%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVIT--DGDISKRIALLKLQKINGELE 73
           +    +  +     + +      +      +NG+ +     ++ K+      + +  ELE
Sbjct: 1   MKKKLLSGLVAAAVLGTMALPVAAQN-LAIVNGKAVPKERAEVLKQQVERSGRPVTPELE 59

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
               +E+I   +  QE +K G+   ++                                 
Sbjct: 60  NQIKEEVIAREIFMQEAQKRGLEGSADYKAQ----------------------------- 90

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
             +      +  ++  +                 + +     +EY    +L    D    
Sbjct: 91  -MELARQTILIRELFVDFQKNNAVTDAEIQAEYDKFVAANAGKEYKASHILVEKEDEAKA 149

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLK 251
               ++K             K  +  +K +         G   +   S    +F + L+K
Sbjct: 150 IIASIKK-----------GGKFEDIAKKQSKDPGSGTRGGDLDWASPSSYVAEFTEALVK 198

Query: 252 KSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
             +   T  P  +Q G   I + D R+          +  Q      ++  A++ + LR+
Sbjct: 199 LEKGKMTQTPVKSQFGWHVIRLDDVREAQL--PKLEEVKPQIAQQLQQQKLAKFQEDLRA 256

Query: 311 NAIIH 315
            A + 
Sbjct: 257 KAKVE 261


>gi|170748998|ref|YP_001755258.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655520|gb|ACB24575.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 277

 Score = 70.1 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 89/294 (30%), Gaps = 36/294 (12%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKK 87
           +   S ++     R    +NG  I+   IS+ +         G  +  A+  L++     
Sbjct: 1   MSACSVQALPNGPRTPIRVNGVTISRAVISREVQNHPAPTPVGAWKAAAL-ALVLREALS 59

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           QE+++  I  +                                    ++      +    
Sbjct: 60  QEVKRLDIRAEPAVDAE------------------------GRRETDEEACMRALVE--- 92

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
            +   + +    E      +   +  +   + +  +LFS   ++  +    +   +    
Sbjct: 93  -REAVVPEPTEEECRRYHARNLARFRSPDIFEVSHILFSARADEASSFALARLNAETVIA 151

Query: 208 -SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTT-NPYVTQ 264
             R             ++       G    + +    P+F++   + +    +  P  T+
Sbjct: 152 MLRTDPDTFAELARAHSACPSGELGGSLGQVTQGQTTPEFEDALRRMTPGQVSTEPVETR 211

Query: 265 KGVEYIAI---CDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            G   I +    D R L    A++  ++A  +     + EA+YV +L   A + 
Sbjct: 212 YGFHVIRLSRHIDGRTLP-FEAVRTCIAAYLSEAVRRRAEAQYVARLLGQARVE 264


>gi|187734680|ref|YP_001876792.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187424732|gb|ACD04011.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 357

 Score = 70.1 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/294 (11%), Positives = 81/294 (27%), Gaps = 24/294 (8%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKIN------------------GELEKIAVQELIVET 84
              + GE +T   +S+R+  LK+ +                    G+L   A  +LI  +
Sbjct: 54  IAEVYGEPVTANQLSRRMTELKMLRQPPVLDMEGGIKLTHELDIPGDLAPRARYDLIGSS 113

Query: 85  LKKQEI--EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           L + +       +   +        Q         E +   L  Q +    F++ +A + 
Sbjct: 114 LLRLKTSVNDLQLPNRNAEAARAVEQIRSRFDGDTEQYLKTLHGQKLTQEQFQKKIAARL 173

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
              + +           + ++      +++      L +T          + +  V++  
Sbjct: 174 KQTEQLYRATAQAAEASDEDLKTYYNLIRDQLTPPDLRKTRH-IFLATLNREEAQVRQTA 232

Query: 203 KDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPY 261
           +   E             +F+       + G+  ++  +         L    +N     
Sbjct: 233 ETLLERLKAGESFSRLAREFSEDERSAPAGGELGWISPARAKETLGLALADVPDNRPVLL 292

Query: 262 VTQKGVEYIAI--CDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            ++ G   +      K            L       +  +    Y+  L   A 
Sbjct: 293 KSRWGWHLVEASPVKKGKTPSYEEALPALRDAARSLRKAQAVGLYMDGLFEEAH 346


>gi|53722410|ref|YP_111395.1| rotamase [Burkholderia pseudomallei K96243]
 gi|52212824|emb|CAH38856.1| putative rotamase [Burkholderia pseudomallei K96243]
          Length = 244

 Score = 70.1 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 3/104 (2%)

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN-NTTNPYVTQK 265
              ++         +F++     S G   ++ +  L    +N +        + P     
Sbjct: 136 NQLIQGASFGELAMRFSTDASRDSGGDIGWVAQGVLSDVARNEIDAIVKSGFSMPIRGSN 195

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
           G   + + DKRD+         +  Q            ++ +LR
Sbjct: 196 GYHLLYVRDKRDIVA--PSLDQIREQLIELARVDKFERHLCELR 237


>gi|212709201|ref|ZP_03317329.1| hypothetical protein PROVALCAL_00234 [Providencia alcalifaciens DSM
           30120]
 gi|212688113|gb|EEB47641.1| hypothetical protein PROVALCAL_00234 [Providencia alcalifaciens DSM
           30120]
          Length = 622

 Score = 70.1 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/398 (10%), Positives = 101/398 (25%), Gaps = 86/398 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T  +     +    +++ F +  +  Y     S+     +NG+ I+   + +  
Sbjct: 1   MMEDLRTKANSPFIKVLLAIIILSFVLTGVAGYVIGGSSNN-AAEVNGQPISKEQLQQAF 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              +                      EL   A+  LI   L  Q   +  ++     +  
Sbjct: 60  QQERQSLQEYLGDKFSEVASNDNYMKELRTQALNNLINNQLINQYANELQLSASDQQIEQ 119

Query: 105 FFVQH---ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV-------------- 147
                     N    +E +   L +  I  ++F   +    +   +              
Sbjct: 120 AIFAMQIFQTNGKFDSEKYREILSRYNINADNFAAQIRQDLVRAQLGKSFTGTEFALPSE 179

Query: 148 --------VKND-----------FMLKYGNLEMEIPANKQKMKNITVREYLIRT------ 182
                   ++                K    E E+ A     +N  +    ++       
Sbjct: 180 VKAYAELFMQEREVRTATLSLAALQAKQTVTEDELKAYYAANQNSFISPEQVQVSYVEMD 239

Query: 183 ------------VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL----------- 219
                        + S  +  L+N    ++++    +          +            
Sbjct: 240 AASMPKASVTDEEVKSYYEQNLKNFTKAEQKLYSMIQVASEKDAQALEAELKGGADFATL 299

Query: 220 --EKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
             EK   K    + G   ++  +    +  +     +   + P   Q       + D + 
Sbjct: 300 ATEKSTDKFSAGNKGVIGWMEATSTPSEIISANLTEKGQVSAPIKVQDNYVLFRLDDVKP 359

Query: 278 --LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             +     +K+ +       K  K   +  +K+   A 
Sbjct: 360 EAVKPFDEVKSSIETSLVQDKSVKQFYDLQQKVSEAAT 397


>gi|91215922|ref|ZP_01252891.1| putative exported peptidyl-prolyl cis-trans isomerase
           [Psychroflexus torquis ATCC 700755]
 gi|91185899|gb|EAS72273.1| putative exported peptidyl-prolyl cis-trans isomerase
           [Psychroflexus torquis ATCC 700755]
          Length = 485

 Score = 70.1 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/281 (10%), Positives = 83/281 (29%), Gaps = 11/281 (3%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS 99
             +   +   ++ + DISK    +K Q++         + ++   L      +  + F+ 
Sbjct: 65  DGVAAVVGDYLVLESDISKAYIDMKNQQVGEITYCDVAETILENKLFAHHAVQDSLPFNP 124

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV----VKNDFMLK 155
           + V  F  Q               L+   I      +    +     +    ++   + +
Sbjct: 125 SRVESFTDQQIDQFVRQVGSMDKLLEFYKIDSESELRDQLNEINTQRMLAEEMQGSIVDE 184

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTV---LFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
                 E     + +    +           +   P+   + Q  V  ++    +  +  
Sbjct: 185 VEITPEETRDFFEAIPKDEIPLINDEVELAQIIVRPEVGEKEQQAVIDKLNFYRDDVVAG 244

Query: 213 PKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                K   ++         GK     E +   +F++      +   + P+ T+ G   +
Sbjct: 245 GSFATKAVLYSEDRGSRSQGGKITLTREDNFVKEFKDAAFSLQEGEVSRPFETEFGWHIL 304

Query: 271 AICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            +   R    +      L  + +   I+K   + ++ +R  
Sbjct: 305 TVEKIRGQQVD-VRHILLYPEISSEAIQKA-KDEIELVRKK 343


>gi|319953958|ref|YP_004165225.1| ppic-type peptidyl-prolyl cis-trans isomerase [Cellulophaga
           algicola DSM 14237]
 gi|319422618|gb|ADV49727.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cellulophaga
           algicola DSM 14237]
          Length = 485

 Score = 70.1 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/288 (9%), Positives = 81/288 (28%), Gaps = 22/288 (7%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQ--KINGELEKIAVQELIVETLKKQEIEKSGITF 97
             +   +   +I + DI K +  L+ Q    +       + +L+ + L   +  +  I  
Sbjct: 63  DGVAAVVGDYLILESDIDKTLIDLRNQGVSADDVSRCSLLGKLMEDRLYAHQAVQDSILV 122

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV----VKNDFM 153
             + VN       +            L      D    +    +     +    ++   +
Sbjct: 123 ADDEVNATSDAQIQQLVTRVGSMEKVLSFYKKTDEESFREELYKINKLRMLSERMQRKIV 182

Query: 154 LKYGNLEMEIPANKQKMKNITVREY----LIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
            +      E+     K+       +     I  ++      + + Q  V +  +  E+  
Sbjct: 183 EEIEITPEEVRQFFNKIPKDQRPVFGSELEIAQIVKKPVAPEEEKQKVVDRLNRIREDIL 242

Query: 210 LRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGV 267
            +      K    +       + G  +   ++    +F+++    +    + P+ T  G 
Sbjct: 243 EKGSSFSIKAILNSEDPGSKQNGGYYKIDKQTGFVKEFKDVAFSLNVGEVSEPFETTFGY 302

Query: 268 EYIAICDKRDLGGEIALKAYLSAQNT----PTKIEKHEAEYVKKLRSN 311
             I +            +  +         P +      + +  +R+ 
Sbjct: 303 HIITVEKILGQ------EREIRHILMIPKVPQRALDASKQELDSIRNQ 344


>gi|269102133|ref|ZP_06154830.1| peptidyl-prolyl cis-trans isomerase PpiD [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268162031|gb|EEZ40527.1| peptidyl-prolyl cis-trans isomerase PpiD [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 565

 Score = 70.1 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/262 (9%), Positives = 70/262 (26%), Gaps = 15/262 (5%)

Query: 61  ALLKLQKINGELEKIAVQELI-VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                      L +  +  +   +     E+ +  +      V      +  +    AE 
Sbjct: 85  EQFAESLRTDLLRQQFLGAIEGSDFALSGEVNELRMLESQERVIRTLTLNLADFTKKAEA 144

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVK---NDFMLKYGNLEMEIPANKQKMKNITVR 176
             +   ++   + + +Q+     +    V+   +         + +   N+ K K  T  
Sbjct: 145 SITEEQEKAFYEQNPQQFTRPAQVKVSYVEITGDKLKDSIEVSDAQAYYNEHKDKFSTPE 204

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQ 235
           +  +  +L         +    +++ +                +K +         GK +
Sbjct: 205 KRQVSHILI------TGDSAASKEKAEAILAQLKDGANFAELAKKDSDDKFSAKDGGKLE 258

Query: 236 YLLESDLHPQFQNLLKK--SQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQ 291
           +  +  + P F++         + +    +  G   I +             +KA + A 
Sbjct: 259 WFEKGVMDPAFEDAAFALAKPGDLSGVVKSSFGYHIILLDGIEPAKAKPFADVKAEIIAD 318

Query: 292 NTPTKIEKHEAEYVKKLRSNAI 313
               K          KL   A 
Sbjct: 319 IKSQKAGDEFYAMQTKLAETAF 340


>gi|326572731|gb|EGE22717.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis BC7]
 gi|326574047|gb|EGE23996.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis CO72]
 gi|326577330|gb|EGE27217.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis O35E]
          Length = 367

 Score = 70.1 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/190 (10%), Positives = 58/190 (30%), Gaps = 8/190 (4%)

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI-RTVLFSIPDNK 191
                   ++    +++   + K  +                    +  R +L + P  +
Sbjct: 163 ERAWLENEEATIAKLLEQKVIAKSPDKASCQNYYHANQVEFVSMPIMTLRHILLACPPQE 222

Query: 192 LQNQGFVQKRIKDAEESRL----RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
            + +  ++K+ +   +       R         ++++       G+   L +    P+F+
Sbjct: 223 GEERIELKKQARQLIDRLNQSHNRDSDFIEFACRYSACPSKDDGGELGVLQKGSTVPEFE 282

Query: 248 NLLKKSQNNTT-NPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEY 304
           + +       + NP  T+ G+  I +  K++            +              +Y
Sbjct: 283 SAVFALPVGISINPIETRYGIHVIEVLQKQEGRQLSFEEAYPIIENHLKQQSFHHSLCDY 342

Query: 305 VKKLRSNAII 314
           + +L   A I
Sbjct: 343 LFELSQKADI 352


>gi|326559933|gb|EGE10332.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis 103P14B1]
 gi|326573879|gb|EGE23831.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis 101P30B1]
          Length = 342

 Score = 70.1 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/190 (10%), Positives = 58/190 (30%), Gaps = 8/190 (4%)

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI-RTVLFSIPDNK 191
                   ++    +++   + K  +                    +  R +L + P  +
Sbjct: 138 ERAWLENEEATIAKLLEQKVIAKSPDKASCQNYYHANQVEFVSMPIMTLRHILLACPPQE 197

Query: 192 LQNQGFVQKRIKDAEESRL----RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
            + +  ++K+ +   +       R         ++++       G+   L +    P+F+
Sbjct: 198 GEERIELKKQARQLIDRLNQSHNRDSDFIEFACRYSACPSKDDGGELGVLQKGSTVPEFE 257

Query: 248 NLLKKSQNNTT-NPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEY 304
           + +       + NP  T+ G+  I +  K++            +              +Y
Sbjct: 258 SAVFALPVGISINPIETRYGIHVIEVLQKQEGRQLSFEEAYPIIENHLKQQSFHHSLCDY 317

Query: 305 VKKLRSNAII 314
           + +L   A I
Sbjct: 318 LFELSQKADI 327


>gi|241763913|ref|ZP_04761956.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax
           delafieldii 2AN]
 gi|241366808|gb|EER61240.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax
           delafieldii 2AN]
          Length = 261

 Score = 70.1 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/303 (11%), Positives = 78/303 (25%), Gaps = 45/303 (14%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +  +     + +      +  I   +NG+ +               +    L + 
Sbjct: 1   MKKQLLSGLVAAAVLGTMALPVSAQNI-AIVNGKAVPK-------------ERAEVLRQQ 46

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
                  E   +    +         +                     +           
Sbjct: 47  V------ERSGRPVTPEMEGQIKEEVIAREIFMQEAQKRGLEASPDYKVQ---------- 90

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             LA Q+I    +  D+       + EI A   K       +    + +           
Sbjct: 91  MELARQTILIRELFADYQKNNTVTDAEIQAEYDKFVAANSGKEYKASHILV--------- 141

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKS 253
              +   K    S  +  K     +K +         G   +   +    +F + L+K  
Sbjct: 142 -EKEADAKAIIASIKKGAKFEEIAKKQSKDPGSGAKGGDLDWANPASYVSEFTEALIKLD 200

Query: 254 QNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
           +   T+ P  +Q G   I + D R           +  Q      ++  A++ ++LR+ A
Sbjct: 201 KGKMTDAPVKSQFGWHVIRLDDVRQAQL--PKLDEVKPQIAQQLQQQKLAKFQEELRAKA 258

Query: 313 IIH 315
            + 
Sbjct: 259 KVE 261


>gi|91779927|ref|YP_555135.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase
           [Burkholderia xenovorans LB400]
 gi|91692587|gb|ABE35785.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase
           [Burkholderia xenovorans LB400]
          Length = 313

 Score = 70.1 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/301 (10%), Positives = 72/301 (23%), Gaps = 55/301 (18%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKK 87
           +   +  S  + + +   +N   IT   + + +           L     ++LI   L +
Sbjct: 54  LATAAAGSTPLPAGVVARVNNISITQDQVDQIVHTTNAPDTPA-LRANIKEQLIARELFR 112

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           Q  EK                                                 +I    
Sbjct: 113 QAAEKDHYATKPEVQAAI------------------------------DQAKNAAIVQAY 142

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           +++                 + +  +   EY    +                   +   +
Sbjct: 143 LRDQIKPAPVTDADVKAQYDKVIATLGDSEYKPSVI-----------AVKDAATAQTILD 191

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYL----------LESDLHPQFQNLLKKSQNNT 257
              +        ++++        G   ++           ++   P  + L+K  Q   
Sbjct: 192 QLKKGVDFAQLAKQYSQGPAAAQGGAQNWISFKTPIQAGNTQNWPQPLAEALVKLPQGAV 251

Query: 258 -TNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            + P         + +  KR   +      K  L  Q     ++K  A+ V  L  NA I
Sbjct: 252 SSEPVQVGDAFWILRVDQKRPTQIPPFDQTKDVLRRQLEQAAMQKATAQVVVGLIRNAHI 311

Query: 315 H 315
            
Sbjct: 312 Q 312


>gi|325265616|ref|ZP_08132306.1| peptidyl-prolyl cis-trans isomerase [Kingella denitrificans ATCC
           33394]
 gi|324982886|gb|EGC18508.1| peptidyl-prolyl cis-trans isomerase [Kingella denitrificans ATCC
           33394]
          Length = 608

 Score = 70.1 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/164 (10%), Positives = 49/164 (29%), Gaps = 6/164 (3%)

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
            D + K      E+ A  +           I  ++ + P +         +   +     
Sbjct: 222 KDLVDKQTVSAEEVQAALKTATTNQKPTRRIAHIMINAPKSADAATRQKAREQAEKIAQE 281

Query: 210 LRL--PKDCNKLEKFASKI-HDVSIGKAQYLLESDLH--PQFQNLLKKSQNNTTNPYVTQ 264
            +    K     ++++       + G    L +  L   P      K +Q   ++   T 
Sbjct: 282 AKASPDKFAELAKQYSQDTGSAQNGGDLGALTQGSLPAKPLDDAAFKLAQGAVSDVVETD 341

Query: 265 KGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
            G   + + +        A +A +  +    K ++   +  +++
Sbjct: 342 FGYHIVRVLEI-QGNDAAAQEARVRQELQLKKAQQAYEKIREEI 384


>gi|145640678|ref|ZP_01796261.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae R3021]
 gi|145274604|gb|EDK14467.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae
           22.4-21]
          Length = 622

 Score = 70.1 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/383 (11%), Positives = 107/383 (27%), Gaps = 84/383 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           +  K+    +  I       + + F +  +  Y  ++ +      +NGEVI+  D   R 
Sbjct: 2   LIEKMHNLTNSKISKFILGLITVSFLVGGMSGYL-FSSNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  AL---LKLQKINGE-------------LEKIAVQELIV-----------------ETLKK 87
                ++ Q+                 L +  V  +I                  E +K+
Sbjct: 61  NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
             +            N  + +  +   L+++ ++S L      +         + I P  
Sbjct: 121 AIVTDPNFQVKGKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVPAQ 180

Query: 148 VK-------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL---- 184
           VK                    D M K    + EI    +  +   V+   ++       
Sbjct: 181 VKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYIDLS 240

Query: 185 ------------------------FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
                                     +  +    Q   ++  K A E   +     +  +
Sbjct: 241 ADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQFANEQDAKVAYEELQKGANFADVAK 300

Query: 221 KFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL 278
             +  KI   + G   ++ E++L   F++          + P         + + +++  
Sbjct: 301 AKSLDKISGENGGDLGWVNENELPKAFEDAAAALQVGQYSQPINVDGNYHIVLVQERK-A 359

Query: 279 GGEIALKAYLSAQNTPTKIEKHE 301
                +KA ++     + +E   
Sbjct: 360 QSLENVKAQIADLVRKSLMESRY 382


>gi|157804053|ref|YP_001492602.1| hypothetical protein A1E_04460 [Rickettsia canadensis str. McKiel]
 gi|157785316|gb|ABV73817.1| hypothetical protein A1E_04460 [Rickettsia canadensis str. McKiel]
          Length = 295

 Score = 70.1 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 91/303 (30%), Gaps = 23/303 (7%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGELE 73
           L++   +      + A    I  ++N E IT  +   R  ++             + +L 
Sbjct: 4   LLLIIGIVFTFNVAQASRPNIVASVNDEPITLNEFLARKKMIIALNNVESLTPAQDKQLS 63

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
            +A++ LI E+L  Q             ++           +       +L  + +    
Sbjct: 64  DLAIKSLIDESLLFQYAGDRE--ITQEEIDNAIKSIEDRNKMPHGSLLQYLKSRSVNPGS 121

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
           F   +  + I  +++ +           EI           V   +         +    
Sbjct: 122 FIAQIKSELIKMNILSS-LSRSVQVSNKEIDVAILSSDQKDVEISMQVFTSKHSGNTAFT 180

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS 253
               ++ R+K   + +  L  +   ++   +K+  +               Q   +   +
Sbjct: 181 QMNNLKNRLKKCTDVKQSLYDNFATMQIITNKLSKIE------------DVQQTIIKDLT 228

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            N  +N +      E I +C K+ L        Y+    T  KI +   +  + +R  A 
Sbjct: 229 PNKASNVFEVNNKFEIILVCSKKILNLNEDENNYVVNYLTNKKISQKAQKIFENMRKKAS 288

Query: 314 IHY 316
           I  
Sbjct: 289 IKI 291


>gi|326565373|gb|EGE15551.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
           catarrhalis 12P80B1]
          Length = 614

 Score = 70.1 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/393 (8%), Positives = 84/393 (21%), Gaps = 88/393 (22%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVIT----DGDISKRI 60
           +   L  +   L     LI    + + ++    +       +  +V+       +++   
Sbjct: 1   MRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHTIQPNELIKVGNQVVDVATFQAEVNAER 60

Query: 61  ALLKLQ------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
             L  Q           L+++ ++ L  + L + +    G+T     +      +     
Sbjct: 61  NALIEQGVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQHYEVFHD 120

Query: 115 LSAEDFSSFLDKQGIGDNHFK------------------------------------QYL 138
                   F                                                Q  
Sbjct: 121 NGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSKLIDLQLE 180

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ----- 193
           A +         D++ +    + +I A   + ++  ++   +      +  N L      
Sbjct: 181 AREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIELDPNVLSVGTPT 240

Query: 194 ----------------------------NQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
                                            Q R    +             +  +  
Sbjct: 241 EQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEALAKAHSDD 300

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKK----SQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
               + G       S        + +     S    + P  T  G     +     +  +
Sbjct: 301 PSGSNGGVIGSFNPSVFGEYAAGVEQALSGLSVGQISQPVQTGFGYHIFKVT---KVSND 357

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
               A +  Q      +    +    L  +A I
Sbjct: 358 TPNIASMRDQLMDRAAKLKRDQAFADL--SAKI 388


>gi|268316323|ref|YP_003290042.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
           DSM 4252]
 gi|262333857|gb|ACY47654.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
           DSM 4252]
          Length = 696

 Score = 70.1 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/242 (7%), Positives = 60/242 (24%), Gaps = 19/242 (7%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           +T+ D+ +     +         ++              + K+    D+  V     +  
Sbjct: 217 VTESDLRRYYNEHRDDFKRKRTYRVV----------YVALPKNPTAEDTLQVLEELNRLK 266

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS-------IWPDVVKNDFMLKYGNLEMEI 163
                +  D                 +   +        ++ D      +       +  
Sbjct: 267 ERFAQTENDSLFLARYASERPFTDAFFRRDELDPALGDVVFDDPQPGKVVGPVVAGGLAH 326

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
               + ++         R +L   P+   + +   ++   + +    +         + +
Sbjct: 327 LVKIRAVRPSEETVIRARHILIRAPEGDAEARRQARQEALELKRQLEQGADFATLAREHS 386

Query: 224 SKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGE 281
                    G   +     +   F+     +       P  T+ G   I +  + ++  +
Sbjct: 387 DDPGSARRGGDLGWFGRGRMVEPFEEAAFSAPIGRVVGPIETRFGYHLIEVTGRSNVEVQ 446

Query: 282 IA 283
           IA
Sbjct: 447 IA 448



 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/378 (10%), Positives = 102/378 (26%), Gaps = 70/378 (18%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD----IS 57
            +K+  +    + +L   F  II+ +    ++     +      +NG+ I+  +    + 
Sbjct: 4   MNKLRENTGVILWILVISF-GIIWVLQDSGAFDVVGRTGDTIAEVNGDPISYQEYVRAVE 62

Query: 58  KRIALLKLQKINGE-------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF---- 106
            ++   + Q            + +     L+ E L++Q +E+ GIT   + V        
Sbjct: 63  AQMQAYQQQTGEAPTPQMSDLIREQVFNALVEERLRQQAMERLGITVTDDEVVQMVLGDN 122

Query: 107 -----------------VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI------ 143
                                +N   +      ++  +        +    Q +      
Sbjct: 123 PHPIIKAYFGDENGNVNRALLQNFIDNPAAREDWIRLEEYLRAERARQKLEQLLLATVHV 182

Query: 144 WPDVVKNDFMLK--------------------YGNLEMEIPANKQKMKNITVREYLIRTV 183
               V+ ++  +                        E ++     + ++   R+   R V
Sbjct: 183 SDQEVEEEYRRRTLRADARYVALRYAEVPDDSVTVTESDLRRYYNEHRDDFKRKRTYRVV 242

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
             ++P N         + +++    + R  +  N     A    +       +    +L 
Sbjct: 243 YVALPKNPTA--EDTLQVLEELNRLKERFAQTENDSLFLARYASERPFTD-AFFRRDELD 299

Query: 244 PQFQN--LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS------AQNTPT 295
           P   +             P V       + I   R     +    ++             
Sbjct: 300 PALGDVVFDDPQPGKVVGPVVAGGLAHLVKIRAVRPSEETVIRARHILIRAPEGDAEARR 359

Query: 296 KIEKHEAEYVKKLRSNAI 313
           +  +   E  ++L   A 
Sbjct: 360 QARQEALELKRQLEQGAD 377



 Score = 38.1 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 7/79 (8%), Positives = 22/79 (27%), Gaps = 1/79 (1%)

Query: 240 SDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK-RDLGGEIALKAYLSAQNTPTKIE 298
                    +    +  T+     +     + +            ++  +  Q    + +
Sbjct: 612 GREPRFIGTVFGLQEGTTSGVVEGENAAFVVQLTKLYEPPPLGEQMREQIRQQLLNQRRQ 671

Query: 299 KHEAEYVKKLRSNAIIHYY 317
           +   +++  LR  A I  Y
Sbjct: 672 QVLTQWLAALREQADIKDY 690


>gi|167586935|ref|ZP_02379323.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ubonensis Bu]
          Length = 644

 Score = 70.1 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/273 (8%), Positives = 61/273 (22%), Gaps = 22/273 (8%)

Query: 53  DGDISKRIALLKLQ-KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
             D+ +   LL  Q     + ++     L ++ +    +  +                 R
Sbjct: 133 SIDVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVSSAFTPKSLAQRLSELAAQQR 192

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ---------SIWPDVVKN--DFMLKYGNLE 160
                    S +  K    D     Y   Q         +    +V +           +
Sbjct: 193 EVQALVLKTSDYASKVQPTDAQLAAYYDAQKQSFATPETATIQYLVYSPAAAAANAQPTD 252

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            +I             E  +R     I      +          AE+    +    ++  
Sbjct: 253 ADIKKFYDDNPTHFRTEAQVRVSHIFIAAAGDASAADKAAAKAKAEQLLADVKAHPDQFA 312

Query: 221 KFA-----SKIHDVSIGKAQYLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAI 272
           + A             G   ++                   Q + +    +  G   +  
Sbjct: 313 QIAQKSSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFALKQGDVSGVVQSDLGFHILKA 372

Query: 273 CDKRDL--GGEIALKAYLSAQNTPTKIEKHEAE 303
            + +         +K  ++ +       K  ++
Sbjct: 373 TEVKPAAVKPFAEVKDAIAVELKQQYASKAFSD 405



 Score = 43.9 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 22/211 (10%), Positives = 55/211 (26%), Gaps = 15/211 (7%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVIT--------DGDISKRIALLKLQ-----KINGELE 73
            V I  ++ +   S     +NG  IT           I +    L  Q         E  
Sbjct: 26  FVGIQGFRGFFDESANVAAVNGHKITRVEFDGTYRQQIDRARQALGAQFDLKSFDTPEHR 85

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQHARNTGLSAEDFSSFLDKQGIGD 131
           K  +  LI + +   E ++  +T   N V           +              Q +  
Sbjct: 86  KEVLDGLIQQRVLADETQRLHLTASDNAVREALLSDPMIASLKKPDGSIDVERYAQLLSF 145

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                    + +   +          +      +  Q++  +  ++  ++ ++    D  
Sbjct: 146 QGMTPEQYQERVRYSLALQQIPASIVSSAFTPKSLAQRLSELAAQQREVQALVLKTSDYA 205

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            + Q    +     +  +           ++
Sbjct: 206 SKVQPTDAQLAAYYDAQKQSFATPETATIQY 236


>gi|165919397|ref|ZP_02219463.1| conserved hypothetical protein [Coxiella burnetii RSA 334]
 gi|165916913|gb|EDR35517.1| conserved hypothetical protein [Coxiella burnetii RSA 334]
          Length = 522

 Score = 70.1 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/320 (10%), Positives = 83/320 (25%), Gaps = 41/320 (12%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSY-KSWAMSSRIRTTINGEVITDGDIS-- 57
           M   +   +  +I  L    V + F +  +  Y +S    ++    +NGE I++ +++  
Sbjct: 1   MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKISENELNVV 60

Query: 58  -KRIALLKLQKING--------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
            +R+      +            L++ A+Q LI+  +     EK G       +N     
Sbjct: 61  FQRLQRAYSLQRGQTLVGAKAEALKEEALQNLIMNHVLLDSAEKMGFNISPAEINQIITV 120

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
                         F            Q++A   +    +              +P   +
Sbjct: 121 LPAFQENGKFSPQRFQQFLYENSLTSAQFVAQ--LLQVFLIQQVEKGITGSAFVLPNEIK 178

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +  +    R ++ S      +++   +      ++ R            +      
Sbjct: 179 NNYELINQARDFRYMIISSAPFLKESKVTPEMIADYYQKHRESFKAPEKLSIAYLLLS-- 236

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
                             +  +  S +                    R+      +K  +
Sbjct: 237 --------------PEMIRQQVSVSDHEIKQ-----------YYESNREGKSFNQVKDQI 271

Query: 289 SAQNTPTKIEKHEAEYVKKL 308
                  KI     +   +L
Sbjct: 272 KQSLLQQKINTLLTKKSDQL 291


>gi|154149760|ref|YP_001403378.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Methanoregula boonei 6A8]
 gi|153998312|gb|ABS54735.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methanoregula boonei
           6A8]
          Length = 93

 Score = 70.1 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 22/75 (29%), Gaps = 1/75 (1%)

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP-QFQNLLKKSQNNTTNPY 261
               +            ++F+S     S G   +  ++ + P          Q     P 
Sbjct: 19  NKILKRIKDGEDFAAVAKRFSSCPSKKSGGDLGWFGKNQMVPEFEAAAFAADQGTVVGPV 78

Query: 262 VTQKGVEYIAICDKR 276
            +Q G   I +  K+
Sbjct: 79  KSQFGYHVIKVTGKK 93


>gi|304382090|ref|ZP_07364601.1| peptidyl-prolyl cis-trans isomerase [Prevotella marshii DSM 16973]
 gi|304336688|gb|EFM02913.1| peptidyl-prolyl cis-trans isomerase [Prevotella marshii DSM 16973]
          Length = 473

 Score = 70.1 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/292 (9%), Positives = 75/292 (25%), Gaps = 36/292 (12%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
            +   + + S    A +  I  TI G+ ++  +                 ++    + + 
Sbjct: 5   ALLISLLLWSMIVAAQTDPIIMTIAGQPVSRSEFE-------YSYNKNNGKEAIDPKTVE 57

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           E  +     K  +    +                                        Q 
Sbjct: 58  EYAELFINYKLKVRAALDARLDTLSSFKN----------------------EFTVYRNQQ 95

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           + P ++             +I   ++         +     +    +   +     ++RI
Sbjct: 96  VKPLLIT---DADVEAEARKIYEQRRAQIGDKGLIHPAHIFIRVPQNAPKEALDRAKQRI 152

Query: 203 KDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNP 260
                +           EK++         G   +    +    F+    +     T  P
Sbjct: 153 DSIYAALRGGADFATLAEKYSEDPMSARQGGALPWFAPGETLEDFEKTAYRLKTGETAPP 212

Query: 261 YVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
            ++  G   I + D++ +     LKA +        I +  A+  ++L+  A
Sbjct: 213 MLSFAGYHIIRMLDRKQMEPFDELKADIIRALKTRNIREKIAD--ERLKEMA 262


>gi|161830280|ref|YP_001597297.1| hypothetical protein COXBURSA331_A1623 [Coxiella burnetii RSA 331]
 gi|161762147|gb|ABX77789.1| conserved hypothetical protein [Coxiella burnetii RSA 331]
          Length = 522

 Score = 70.1 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/320 (10%), Positives = 83/320 (25%), Gaps = 41/320 (12%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSY-KSWAMSSRIRTTINGEVITDGDIS-- 57
           M   +   +  +I  L    V + F +  +  Y +S    ++    +NGE I++ +++  
Sbjct: 1   MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKISENELNVV 60

Query: 58  -KRIALLKLQKING--------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
            +R+      +            L++ A+Q LI+  +     EK G       +N     
Sbjct: 61  FQRLQRAYSLQRGQTLVGAKAEALKEEALQNLIMNHVLLDSAEKMGFNISPAEINQIITV 120

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
                         F            Q++A   +    +              +P   +
Sbjct: 121 LPAFQENGKFSPQRFQQFLYENSLTSAQFVAQ--LLQVFLIQQVEKGITGSAFVLPNEIK 178

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +  +    R ++ S      +++   +      ++ R            +      
Sbjct: 179 NNYELINQARDFRYMIISSAPFLKESKVTPEMIADYYQKHRESFKAPEKLSIAYLLLS-- 236

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
                             +  +  S +                    R+      +K  +
Sbjct: 237 --------------PEMIRQQVSVSDHEIKQ-----------YYESNREGKSFNQVKDQI 271

Query: 289 SAQNTPTKIEKHEAEYVKKL 308
                  KI     +   +L
Sbjct: 272 KQSLLQQKINTLLTKKSDQL 291


>gi|301631437|ref|XP_002944804.1| PREDICTED: chaperone surA-like [Xenopus (Silurana) tropicalis]
          Length = 255

 Score = 70.1 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 12/108 (11%), Positives = 39/108 (36%), Gaps = 4/108 (3%)

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN--LLKKSQNNTTNPYVTQKGVEY 269
             +      ++++       G+  +L   D  P+F       +     +    ++ G+  
Sbjct: 139 GTRFAQAARQWSNCPSGQEGGELGWLRAEDCAPEFARAVFGTQEVGVLSRLVHSRFGLHV 198

Query: 270 IAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           + +C+++  +      ++A ++             +Y++ L  NA + 
Sbjct: 199 VEVCERQPGEALPFEQIRASVALLLRQQAWVNALRQYLQLLVDNAEVE 246


>gi|241763440|ref|ZP_04761494.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax
           delafieldii 2AN]
 gi|241367382|gb|EER61703.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax
           delafieldii 2AN]
          Length = 247

 Score = 70.1 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 13/170 (7%), Positives = 40/170 (23%), Gaps = 5/170 (2%)

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
                     +       + +       +     +           G  + + +   E  
Sbjct: 62  AKIDKDSAPSDAVAEGQARNIYKAKPDRFQAPEQVQVRHILIAGTDGGARAQAEKVLEEL 121

Query: 210 LRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKG 266
                     ++ ++        G         + P+F       K   + +    T+ G
Sbjct: 122 KAGADFAQLAKERSADTGSGAKGGDLGLFARGRMVPEFDEAAFALKQPGDLSGIVETKFG 181

Query: 267 VEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              + +  +R  G      ++  L  +      +       +K++    I
Sbjct: 182 FHILKLDARRPAGLRPYEEVREELIKEVRGKLQQDARVAEAEKVQQGLTI 231


>gi|226224827|ref|YP_002758934.1| post-translocation molecular chaperone [Listeria monocytogenes
           Clip81459]
 gi|254825217|ref|ZP_05230218.1| rotamase [Listeria monocytogenes FSL J1-194]
 gi|254853343|ref|ZP_05242691.1| export protein [Listeria monocytogenes FSL R2-503]
 gi|254992110|ref|ZP_05274300.1| post-translocation molecular chaperone [Listeria monocytogenes FSL
           J2-064]
 gi|255520683|ref|ZP_05387920.1| post-translocation molecular chaperone [Listeria monocytogenes FSL
           J1-175]
 gi|300763971|ref|ZP_07073967.1| protein export protein [Listeria monocytogenes FSL N1-017]
 gi|225877289|emb|CAS06003.1| Putative post-translocation molecular chaperone [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258606707|gb|EEW19315.1| export protein [Listeria monocytogenes FSL R2-503]
 gi|293594463|gb|EFG02224.1| rotamase [Listeria monocytogenes FSL J1-194]
 gi|300515312|gb|EFK42363.1| protein export protein [Listeria monocytogenes FSL N1-017]
          Length = 293

 Score = 70.1 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/304 (9%), Positives = 84/304 (27%), Gaps = 40/304 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +L +  ++ + S  +      +  T +   +T  ++   +          +    
Sbjct: 1   MKKKLILGLVMMMALFSLAACGGGGDVVKT-DSGDVTQDELYDAMK--------DKYGSE 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            VQ+L  E +   + + S    D            +        +              +
Sbjct: 52  FVQQLTFEKILGDKYKVSDEDVD------------KKFNEYKSQYGDQFSAVLAQSGLTE 99

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    Q  +  +V+          +  +    +                +          
Sbjct: 100 KSFKSQLKYNLLVQKATEANTDTSDKTLKKYYET---------------WQPDITVSHIL 144

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLK--K 252
              + + K+ E+      K  +  +++++      + G+        + P F+      K
Sbjct: 145 VADENKAKEVEQKLKDGAKFADLAKEYSTDTATKDNGGQLAPFGPGKMDPAFEKAAYALK 204

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA-QNTPTKIEKHEAEYVKKLRSN 311
           ++ + + P  TQ G   I +            K  + A         ++  + +KK   +
Sbjct: 205 NKGDISAPVKTQYGYHIIQMDKPATKTTFEKDKKAVKASYLESQLTTENMQKTLKKEYKD 264

Query: 312 AIIH 315
           A + 
Sbjct: 265 ANVK 268


>gi|46908453|ref|YP_014842.1| protein export protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47094429|ref|ZP_00232114.1| protein export protein [Listeria monocytogenes str. 4b H7858]
 gi|254931668|ref|ZP_05265027.1| rotamase [Listeria monocytogenes HPB2262]
 gi|67461025|sp|Q71XE6|PRSA2_LISMF RecName: Full=Foldase protein prsA 2; Flags: Precursor
 gi|46881724|gb|AAT05019.1| protein export protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47017195|gb|EAL08043.1| protein export protein [Listeria monocytogenes str. 4b H7858]
 gi|293583223|gb|EFF95255.1| rotamase [Listeria monocytogenes HPB2262]
 gi|328472118|gb|EGF42993.1| post-translocation molecular chaperone [Listeria monocytogenes 220]
 gi|332312671|gb|EGJ25766.1| Foldase protein prsA 1 [Listeria monocytogenes str. Scott A]
          Length = 293

 Score = 70.1 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/304 (9%), Positives = 84/304 (27%), Gaps = 40/304 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +L +  ++ + S  +      +  T +   +T  ++   +          +    
Sbjct: 1   MKKKLILGLVMMMALFSLAACGGGGDVVKT-DSGDVTQDELYDAMK--------DKYGSE 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            VQ+L  E +   + + S    D            +        +              +
Sbjct: 52  FVQQLTFEKILGDKYKVSDEDVD------------KKFNEYKSQYGDQFSAVLAQSGLTE 99

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    Q  +  +V+          +  +    +                +          
Sbjct: 100 KSFKSQLKYNLLVQKATEANTDTSDKTLKKYYET---------------WQPDITVSHIL 144

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLK--K 252
              + + K+ E+      K  +  +++++      + G+        + P F+      K
Sbjct: 145 VADENKAKEVEQKLKDGAKFADLAKEYSTDTATKDNGGQLAPFGPGKMDPAFEKAAYALK 204

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA-QNTPTKIEKHEAEYVKKLRSN 311
           ++ + + P  TQ G   I +            K  + A         ++  + +KK   +
Sbjct: 205 NKGDISAPVKTQYGYHIIQMDKPATKTTFEKDKKAVKASYLESQLTTENMQKTLKKEYKD 264

Query: 312 AIIH 315
           A + 
Sbjct: 265 ANVK 268


>gi|228942849|ref|ZP_04105367.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228816835|gb|EEM62942.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
          Length = 284

 Score = 70.1 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 43/122 (35%), Gaps = 4/122 (3%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNN 256
           +K  K+ +E            ++++         G+       ++  +F+    K     
Sbjct: 149 EKTAKEIKEKLNNGEDFAALAKQYSEDPGSKEKGGELPEFGPGEMDSKFEEAAYKLEAGQ 208

Query: 257 TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK--IEKHEAEYVKKLRSNAII 314
            ++P  +  G   I + +K++L      K  +  +    +   ++ + ++ K L   A I
Sbjct: 209 VSDPIKSSHGYHIIKLTEKKELKPFDQEKDNIRKELEQKRSQDQQWQQQFFKDLFKKADI 268

Query: 315 HY 316
             
Sbjct: 269 KI 270


>gi|257095903|ref|YP_003169544.1| nitrogen fixation protein NifM [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048427|gb|ACV37615.1| nitrogen fixation protein NifM [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 277

 Score = 70.1 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/243 (10%), Positives = 69/243 (28%), Gaps = 13/243 (5%)

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            +  ++ LI+ET +   +     + D++ +        R      +++ + L++ G+   
Sbjct: 39  RQQEIEVLILETPEAASVMLPAASIDASLME------IRRRYADDDEYHAELERVGLDAA 92

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             +Q +A   +   V++          + ++       +               +  N+ 
Sbjct: 93  ALRQAVARDLVVEAVLERVAAAAAPVSDTDVEIFWYMNQQRFRHGETRVLRHLLVTINEN 152

Query: 193 QNQGFVQKRIKDAEESRLRL----PKDCNKLEKFASKIHDVSIGKAQYLLESDL-HPQFQ 247
                 Q      E  R RL     +   +  K +     V  G    +    L      
Sbjct: 153 LAGNERQTARARIEAIRARLLREPQRFAEQALKHSECPTAVHGGLLGRVPRGQLYPQVDA 212

Query: 248 NLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYV 305
                ++   +    ++ G   I     +          +  +       +    +  ++
Sbjct: 213 AAFTLAEGMLSEVIESELGYHLIRCEAIQHERLLSFAEARQTIREHLDGQQQALCQKAWI 272

Query: 306 KKL 308
           K L
Sbjct: 273 KAL 275


>gi|242279457|ref|YP_002991586.1| hypothetical protein Desal_1987 [Desulfovibrio salexigens DSM 2638]
 gi|242122351|gb|ACS80047.1| conserved hypothetical protein [Desulfovibrio salexigens DSM 2638]
          Length = 319

 Score = 70.1 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 101/311 (32%), Gaps = 27/311 (8%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA--------LLKLQKI 68
               ++ +     +   ++ +    I   +NG  I    +  +           +   + 
Sbjct: 1   MKKILIGVLLACSLFGCQNKSEEPGIIARVNGNPIYLSQLEYKYDLTHEGVGGFVPSVEQ 60

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
                   + +LIV+ L  QE+E+  I      +     +   +     + F   L ++ 
Sbjct: 61  VRAEYGQILGDLIVQELVAQELEQREIPVSDKELKEAEDEVRSD--YPDDSFEQILIEEY 118

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
           I  N ++  L  Q       ++    +      E     +   +        + V+    
Sbjct: 119 IDINAWRSQLKYQLAMDKFFQDILRPEIKIDYKEAEKYYRTHLSDFYMPAGYKFVMVKGM 178

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
                          D     + L ++       ++K+  VS+ +  ++    +   ++ 
Sbjct: 179 GK-------------DLVLKGVDLYREGLTPAAISAKLRKVSVREI-WIRNGQIPANWKP 224

Query: 249 LLKKSQNNTTNPYVTQKG-VEYIAICDKRDLGGEIALKAY--LSAQNTPTKIEKHEAEYV 305
            ++  +     P +TQK  V  + + +K++      L+AY  +       K+++    ++
Sbjct: 225 FVEDLEPGKATPVITQKKEVFCLILKEKKEATLLTPLQAYPMVEKVLLERKLKEKFESWL 284

Query: 306 KKLRSNAIIHY 316
           K+  + + I  
Sbjct: 285 KEKMATSKIKI 295


>gi|260581919|ref|ZP_05849715.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           NT127]
 gi|260095112|gb|EEW79004.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           NT127]
          Length = 622

 Score = 69.7 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 46/395 (11%), Positives = 111/395 (28%), Gaps = 84/395 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           +  K+    +  I       + + F +  +  Y  ++ +      +NGEVI+  D   R 
Sbjct: 2   LIEKMHNLTNSKISKFILGLITVSFLVGGMSGYL-FSSNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  AL---LKLQKINGE-------------LEKIAVQELIVETLKKQEIE------------- 91
                ++ Q+                 L +  V  +I + L +Q ++             
Sbjct: 61  NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 92  ----KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
                          N  + +  +   L+++ ++S L      +         + I P  
Sbjct: 121 AIVTDPNFQVKGKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVPAQ 180

Query: 148 VK-------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
           VK                    D M K    + EI    +  +   V+   ++     + 
Sbjct: 181 VKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYIDLS 240

Query: 189 DNKLQNQGFV----------------------------QKRIKDAEESRLRLPKDCNKLE 220
            + +     V                            ++  K A E   +     +  +
Sbjct: 241 ADNISKNLQVTDIEIAQYYQDNKAQFMTQRLAHIQFANEQDAKVAYEELQKGANFADVAK 300

Query: 221 KFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL 278
             +  KI   + G   ++  ++L   F++          + P         + + +++  
Sbjct: 301 TKSLDKISGENGGDLGWVNANELPKAFEDAAAALQVGQYSQPINVDGNYHIVLVQERK-A 359

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                +KA ++     + +E       K+    A 
Sbjct: 360 QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAF 394


>gi|50121865|ref|YP_051032.1| nitrogen fixation protein [Pectobacterium atrosepticum SCRI1043]
 gi|49612391|emb|CAG75841.1| nitrogen fixation protein [Pectobacterium atrosepticum SCRI1043]
          Length = 265

 Score = 69.7 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 12/154 (7%), Positives = 40/154 (25%), Gaps = 3/154 (1%)

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
               E+    ++      R     T    +   +  ++   ++ +    + +        
Sbjct: 107 PTSAEVEQWYRRHAARFCRPEQRLTRHLLLTTGEDDSEAISRQLLALRRQLQSDTAAFAT 166

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKR 276
             E+ +     +  G   ++    L       L        +    T  G   +     R
Sbjct: 167 LAERHSQCPTALEGGLLGWVSRGLLFTSLDQALFTLHEGELSAIIETDIGWHLLLCEAIR 226

Query: 277 DLGG--EIALKAYLSAQNTPTKIEKHEAEYVKKL 308
                 +    A         + ++ + +++ +L
Sbjct: 227 PETPMAQEDALAKAYDHLLLQRQKEQQRQWLVQL 260


>gi|222111223|ref|YP_002553487.1| ppic-type peptidyl-prolyl cis-trans isomerase [Acidovorax ebreus
           TPSY]
 gi|221730667|gb|ACM33487.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax ebreus
           TPSY]
          Length = 261

 Score = 69.7 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/305 (11%), Positives = 87/305 (28%), Gaps = 49/305 (16%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVIT--DGDISKRIALLKLQKINGELE 73
           +    +  +     + +      +      +NG+ +     ++ K+      + +  ELE
Sbjct: 1   MKKKLLSGLVAAAVLGTMALPVAAQN-LAIVNGKAVPKERAEVLKQQVERSGRPVTPELE 59

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
               +E+I   +  QE +K G+   ++                                 
Sbjct: 60  NQIKEEVIAREIFMQEAQKRGLEGSADYKAQ----------------------------- 90

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
             +      +  ++  +                 + +     +EY    +L    D    
Sbjct: 91  -MELARQTILIRELFVDFQKNNAVTDAEIQAEYDKFVAANAGKEYKASHILVEKEDEAKA 149

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLK 251
               ++K             K  +  +K +         G   +   S    +F + L+K
Sbjct: 150 IIASIKK-----------GGKFEDIAKKQSKDPGSGARGGDLDWASPSSYVAEFTEALVK 198

Query: 252 KSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
             +   T  P  +Q G   I + D R+          +  Q      ++  A++ + LR+
Sbjct: 199 LEKGKMTQTPVKSQFGWHVIRLDDVREAQL--PKLEEVKPQIAQQLQQQKLAKFQEDLRA 256

Query: 311 NAIIH 315
            A + 
Sbjct: 257 KAKVE 261


>gi|154149306|ref|YP_001405723.1| putative periplasmic protein [Campylobacter hominis ATCC BAA-381]
 gi|153805315|gb|ABS52322.1| putative periplasmic protein [Campylobacter hominis ATCC BAA-381]
          Length = 275

 Score = 69.7 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 91/299 (30%), Gaps = 35/299 (11%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELI 81
            +   ++      +  + + +   +  E IT  +++K I    L          A++ LI
Sbjct: 5   FVFLSLIFGFCLANADVINGVVAVVENEPITHYELNKMIKTRGLN------PNDALEVLI 58

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
              L+  EI++ GI       N      A    +S +   + + KQG   + FK+ +   
Sbjct: 59  KNKLQVAEIKRLGIITSDYETNERIKAIAAQNKISVDTMQASIKKQGGTWSEFKENVRNS 118

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
                +    F     ++  E               Y    ++  I  N          +
Sbjct: 119 LQEEKLYAAIFKEVAKSVTPENVEKFYNENPSLFTTYDSVNLIRYISKNANALSAIKAGK 178

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNP 260
             D  +                             L  S ++   +  +     +  +  
Sbjct: 179 NADGVQKIS------------------------GVLKNSQMNESLRYVVSNVGPDGFSPI 214

Query: 261 YVTQKGVEYIAICDK---RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             T+ G E   +  K     +  E A +  + A     + +K    + +KLRSNAII  
Sbjct: 215 IPTKLGYEMFKVNSKNGVNKISFEEAQQKAIEAYTISER-KKAIENFNQKLRSNAIIKI 272


>gi|311748699|ref|ZP_07722484.1| putative PPIC-type PPIASE domain protein [Algoriphagus sp. PR1]
 gi|126577231|gb|EAZ81479.1| putative PPIC-type PPIASE domain protein [Algoriphagus sp. PR1]
          Length = 666

 Score = 69.7 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/256 (10%), Positives = 72/256 (28%), Gaps = 15/256 (5%)

Query: 59  RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
           R + +  Q      ++ ++  L    LK ++  ++G   +   + Y     A+       
Sbjct: 137 RASHILFQFPPNASQEDSLSVL-RMALKVKDQIENGGDINELALEYSEDPSAKQNKGDLG 195

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
            F++    Q   D  F            +                       +    +  
Sbjct: 196 YFTALQMVQPFEDAAFS-----------LQAGQVSDPVMTNFGYHIIKVLDKRPNPGQVR 244

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYL 237
           +   ++    D+        +K      E +       N ++ ++       + G   + 
Sbjct: 245 VSHILVRIDADDPNAEDLARRKVADIYTEIQKENTVWENIVKNYSEDPASSQNGGMLPWF 304

Query: 238 LESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT 295
               + P+F+            + P  T+ G   + + DK+ +     L+  + ++    
Sbjct: 305 SVGSMIPEFEMAAFSLTEIGEVSPPVKTKYGYHILRLEDKKPIDSFEDLEESIRSRIMRD 364

Query: 296 KIEKHEAEYVKKLRSN 311
                    V  ++ +
Sbjct: 365 SRSTMIQSQVMAIQKS 380



 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 57/215 (26%), Gaps = 4/215 (1%)

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I     +++     I+   ++              +   F ++  K              
Sbjct: 39  IGGKPVEKDELIYLISKGKDSDPSSTGMSRDEFEENLNQFINYKLKVREAVELGMDESQE 98

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
             +  +  K +    Y           +K  +          +LF  P N  Q       
Sbjct: 99  FLMEFESYKENLKAPYLIKNSLEEGELRKAYSRMQEVVRASHILFQFPPNASQEDSLSVL 158

Query: 201 RIK-DAEESRLRLPKDCNKLEKFASKIHD-VSIGKAQYLLESDLHPQFQNLLKK-SQNNT 257
           R+    ++             +++       + G   Y     +   F++          
Sbjct: 159 RMALKVKDQIENGGDINELALEYSEDPSAKQNKGDLGYFTALQMVQPFEDAAFSLQAGQV 218

Query: 258 TNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN 292
           ++P +T  G   I + DKR   G     +++  + 
Sbjct: 219 SDPVMTNFGYHIIKVLDKRPNPG-QVRVSHILVRI 252


>gi|294141764|ref|YP_003557742.1| peptidyl-prolyl cis-trans isomerase D [Shewanella violacea DSS12]
 gi|293328233|dbj|BAJ02964.1| peptidyl-prolyl cis-trans isomerase D [Shewanella violacea DSS12]
          Length = 621

 Score = 69.7 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/267 (9%), Positives = 61/267 (22%), Gaps = 9/267 (3%)

Query: 55  DISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV--NYFFVQHARN 112
            +  +    +         +  V  L+                   T    Y  V  +  
Sbjct: 144 QLGYQANTFRNMMRTDMTRRQLVASLVGSEFVLPGETSYLAGIQGQTRDIRYHIVDASPF 203

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
              +               + F     +   + ++   D        + E      + K 
Sbjct: 204 VADAKVTDEQAQSFYDANLSQFMSPETLSLEYIELNVADMANDVSVTDAEAQTYYDENKQ 263

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSI 231
             ++          I     ++    +                    +  +         
Sbjct: 264 QYLKPEKRLAAHILINLGDDESVSKAKAEAI--YAKLQAGDDFSELAKTESEDTFSGELG 321

Query: 232 GKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA 290
           GK  +  +  + P F + L   S+ + +    T  G   I + D +      A  A +  
Sbjct: 322 GKLDWFEQGVMDPAFDEVLYSLSKGSYSTVVKTSFGYHIIKLLDVQPGV--EAPFADVKD 379

Query: 291 QNTPTKIEKHEAEYVKKLRSN-AIIHY 316
                  +K   +    L+   A + Y
Sbjct: 380 NIIAELKDKAAVDTYYGLQQTLADVTY 406



 Score = 68.2 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 66/238 (27%), Gaps = 19/238 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+       I       V++ F    + SY   +  +    T+NGE I++  + +  
Sbjct: 1   MLEKIREGSQGVIAKSILVLVILSFAFTGVSSYLGSSTEAA-AATVNGEDISESALEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     ++K  ++ L+ E L  Q   + G+      +  
Sbjct: 60  QSERARLEQQMGDMFQALAANDTYLASVKKSVLERLVAEKLLDQSATELGLRVSDEQIKN 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
             +           D   +L            +     +  D+ +   +      E  +P
Sbjct: 120 AIMIEPAFQTDGQFDNDRYLAILRQLGYQANTF--RNMMRTDMTRRQLVASLVGSEFVLP 177

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                +  I  +   IR  +          +   ++     + +  +         ++
Sbjct: 178 GETSYLAGIQGQTRDIRYHIVDASPFVADAKVTDEQAQSFYDANLSQFMSPETLSLEY 235


>gi|145634178|ref|ZP_01789889.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           PittAA]
 gi|145268622|gb|EDK08615.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           PittAA]
          Length = 622

 Score = 69.7 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 46/395 (11%), Positives = 111/395 (28%), Gaps = 84/395 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           +  K+    +  I       + + F +  +  Y  ++ +      +NGEVI+  D   R 
Sbjct: 2   LIEKMHNLTNSKISKFILGLITVSFLVGGMSGYL-FSSNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  AL---LKLQKINGE-------------LEKIAVQELIVETLKKQEIE------------- 91
                ++ Q+                 L +  V  +I + L +Q ++             
Sbjct: 61  NQEFEIRAQREGEAFMGQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 92  ----KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
                          N  + +  +   L+++ ++S L      +         + I P  
Sbjct: 121 AIVTDPNFQVKGKFDNSVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVPAQ 180

Query: 148 VK-------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
           VK                    D M K    + EI    +  +   V+   ++     + 
Sbjct: 181 VKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYIDLS 240

Query: 189 DNKLQNQGFV----------------------------QKRIKDAEESRLRLPKDCNKLE 220
            + +     V                            ++  K A E   +     +  +
Sbjct: 241 ADNISKNLQVTDIEIAQYYQDNKAQFMTQRLAHIQFANEQDAKVAYEELQKGANFADVAK 300

Query: 221 KFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL 278
             +  KI   + G   ++  ++L   F++          + P         + + +++  
Sbjct: 301 TKSLDKISGENGGDLGWVNANELPKAFEDAAAALQVGQYSQPINVDGNYHIVLVQERK-A 359

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                +KA ++     + +E       K+    A 
Sbjct: 360 QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAF 394


>gi|29654742|ref|NP_820434.1| hypothetical protein CBU_1451 [Coxiella burnetii RSA 493]
 gi|29542010|gb|AAO90948.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii RSA 493]
          Length = 522

 Score = 69.7 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/320 (10%), Positives = 83/320 (25%), Gaps = 41/320 (12%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSY-KSWAMSSRIRTTINGEVITDGDIS-- 57
           M   +   +  +I  L    V + F +  +  Y +S    ++    +NGE I++ +++  
Sbjct: 1   MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKISENELNVV 60

Query: 58  -KRIALLKLQKING--------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
            +R+      +            L++ A+Q LI+  +     EK G       +N     
Sbjct: 61  FQRLQRAYSLQRGQTLVGAKAEALKEEALQNLIMNHVLLDSAEKMGFNISPAEINQIITV 120

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
                         F            Q++A   +    +              +P   +
Sbjct: 121 LPAFQENGKFSPQRFQQFLYENSLTSAQFVAQ--LLQVFLIQQVEKGITGSAFVLPNEIK 178

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +  +    R ++ S      +++   +      ++ R            +      
Sbjct: 179 NNYELINQARDFRYMIISSAPFLKESKVTPEMIADYYQKHRESFKAPEKLSIAYLLLS-- 236

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
                             +  +  S +                    R+      +K  +
Sbjct: 237 --------------PEMIRQQVSVSDHEIKQ-----------YYESNREGKSFNQVKDQI 271

Query: 289 SAQNTPTKIEKHEAEYVKKL 308
                  KI     +   +L
Sbjct: 272 KQSLLQQKINTLLTKKSDQL 291


>gi|294341087|emb|CAZ89484.1| putative peptidyl-prolyl cis-trans isomerase [Thiomonas sp. 3As]
          Length = 226

 Score = 69.7 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 17/178 (9%), Positives = 44/178 (24%), Gaps = 4/178 (2%)

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
            +++   V+++D       +        Q    +   + +    +               
Sbjct: 33  DETLLEAVLQHDVHTPEPGVAECERYYAQHADALRQGDMVEADHILFAVTPSTPIDALRH 92

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKKSQNNT 257
           K                      ++       G    L      P+F    +        
Sbjct: 93  KAEDTLYALMADSSGFAEMARGLSNCPSAQIGGNLGQLTADQCVPEFWQAFMEHAEPGVL 152

Query: 258 TNPYVTQKGVEYIAI--CDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                T+ G+  + I    +  L    A++A ++       + +    Y + L  +A 
Sbjct: 153 PRLVRTRFGLHIVRIARIARGQLPPFEAVQAQIAQTLRQQSLVRALQLYAEDLERHAT 210


>gi|228976219|ref|ZP_04136699.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228783511|gb|EEM31610.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
          Length = 279

 Score = 69.7 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 43/122 (35%), Gaps = 4/122 (3%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNN 256
           +K  K+ +E            ++++         G+       ++  +F+    K     
Sbjct: 144 EKTAKEIKEKLNNGEDFAALAKQYSEDPGSKEKGGELPEFGPGEMDSKFEEAAYKLEAGQ 203

Query: 257 TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK--IEKHEAEYVKKLRSNAII 314
            ++P  +  G   I + +K++L      K  +  +    +   ++ + ++ K L   A I
Sbjct: 204 VSDPIKSSHGYHIIKLTEKKELKPFDQEKDNIRKELEQKRSQDQQWQQQFFKDLFKKADI 263

Query: 315 HY 316
             
Sbjct: 264 KI 265


>gi|145630100|ref|ZP_01785882.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae R3021]
 gi|144984381|gb|EDJ91804.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae R3021]
          Length = 622

 Score = 69.7 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/395 (11%), Positives = 110/395 (27%), Gaps = 84/395 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           +  K+    +  I       + + F +  +  Y  ++ +      +NGEVI+  D   R 
Sbjct: 2   LIEKMHNLTNSKISKFILGLITVSFLVGGMSGYL-FSSNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  AL---LKLQKINGE-------------LEKIAVQELIVETLKKQEIE------------- 91
                ++ Q+                 L +  V  +I + L +Q ++             
Sbjct: 61  NQEFEIRAQREGEAFMGQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 92  ----KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
                          N  + +  +   L+++ ++S L      +         + I P  
Sbjct: 121 AIVTDPNFQVKGKFDNSVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVPAQ 180

Query: 148 VK-------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
           VK                    D M K    + EI    +  +   V+   ++     + 
Sbjct: 181 VKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYIDLS 240

Query: 189 DNKLQNQGFV----------------------------QKRIKDAEESRLRLPKDCNKLE 220
            + +     V                            ++  K   E   +     +  +
Sbjct: 241 ADNISKNLQVTDIEIAQYYQDNKAQFMTQRLAHIQFANEQDAKVVYEELQKGANFADVAK 300

Query: 221 KFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL 278
             +  KI   + G   ++  ++L   F++          + P         + + +++  
Sbjct: 301 TKSLDKISGENGGDLGWVNANELPKAFEDAAAALQVGQYSQPINVDGNYHIVLVQERK-A 359

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                +KA ++     + +E       K+    A 
Sbjct: 360 QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAF 394


>gi|194364618|ref|YP_002027228.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stenotrophomonas
           maltophilia R551-3]
 gi|194347422|gb|ACF50545.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stenotrophomonas
           maltophilia R551-3]
          Length = 651

 Score = 69.7 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/194 (9%), Positives = 43/194 (22%), Gaps = 4/194 (2%)

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
             D +   D Q             Q+    +   +                 + +    +
Sbjct: 222 PADTAPVTDAQIKQWYDSHGKDFRQAESVSLEYVEINGGNLPAPTAADEATLRKRYEDEK 281

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQ 235
                          L   G   K  K A E++          +  +         G   
Sbjct: 282 AKFTSPEQRQASHILLTGDGAEAKANKIAAEAKAAGADFAALAKANSEDPGSKEQGGDLG 341

Query: 236 YLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP 294
           ++    +   F++        +   P  T  G   I +   R   G+      +      
Sbjct: 342 WVERGAMVKPFEDALFAAKAGDVIGPVKTDFGYHIIKVAAVRGGEGKS--FEEVRDTLAA 399

Query: 295 TKIEKHEAEYVKKL 308
            +++        +L
Sbjct: 400 EQLKADGERGFNEL 413



 Score = 50.4 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/303 (9%), Positives = 79/303 (26%), Gaps = 40/303 (13%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTI-------------- 46
           M  K+    S +I  +    ++I F  V   SY     +      +              
Sbjct: 1   MLQKLRDKTSGWIVTVILGLLMIPFLFVIDNSYLGGVGAQN-VAKVSAPPTWWRSAPSWW 59

Query: 47  ------NGEVITDGDISKRIALLKLQKINGELEK-------------IAVQELIVETLKK 87
                     I+  D   R    ++++   + E                + +LI E + +
Sbjct: 60  PVRMLWQHHEISAQDFRTRFEQERMRERQQQGENFDPRAFESNESKMAVLDQLIDEQVVR 119

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
              E++G+      V  +            +    F +                + + ++
Sbjct: 120 LVGEQAGVVIGDGAVREYITTIPAF----LDSNGKFNENNYRLALAGGNPPRTPTQFQEL 175

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           V+           ++      + +   + + L  T    +                  ++
Sbjct: 176 VRESLQQSVIPSGLQNSGFVTQAETERLLKLLGETRDVELAALPEVPADTAPVTDAQIKQ 235

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGV 267
                 KD  + E  + +  +++ G       +D     +    +    T+     ++  
Sbjct: 236 WYDSHGKDFRQAESVSLEYVEINGGNLPAPTAADEATLRKRYEDEKAKFTSP--EQRQAS 293

Query: 268 EYI 270
             +
Sbjct: 294 HIL 296


>gi|319793857|ref|YP_004155497.1| ppic-type peptidyL-prolyl cis-trans isomerase [Variovorax paradoxus
           EPS]
 gi|315596320|gb|ADU37386.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus
           EPS]
          Length = 261

 Score = 69.7 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 87/291 (29%), Gaps = 48/291 (16%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--GELEKIAVQELIVETLKK 87
           ++     A  ++    +NG+ +    +      L         E++    +E++   +  
Sbjct: 14  LIGAIPMAALAQNAAIVNGKPVPKARMDVLAQQLAAAGRPVTPEMQSQLREEIVAREVFM 73

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           QE +K G+  + +  N                                +      +   +
Sbjct: 74  QEAQKQGLDANDDYKNQL------------------------------ELARQAILIRAL 103

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
             N       +         + +     +EY  R +L              + + K    
Sbjct: 104 FDNYRKTNPVSDADVKAEYDKFVAANGGKEYKARHIL-----------VETEDQAKKIMA 152

Query: 208 SRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQ 264
              +  K  +  +K +       + G   +   +   P+F + ++K  +  TT  P  TQ
Sbjct: 153 DLKKGAKFEDIAKKQSKDPGSGANGGDLDWANPASFVPEFSEAMIKLKKGETTPAPIKTQ 212

Query: 265 KGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            G   I + D R           +  Q T    ++   +Y ++LR+ A + 
Sbjct: 213 FGYHIIRVDDIRQAQL--PKLEEVKPQVTQQLQQQRLQKYQEELRAKAKVE 261


>gi|212219179|ref|YP_002305966.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuK_Q154]
 gi|212013441|gb|ACJ20821.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuK_Q154]
          Length = 522

 Score = 69.7 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/320 (10%), Positives = 82/320 (25%), Gaps = 41/320 (12%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSY-KSWAMSSRIRTTINGEVITDGDIS-- 57
           M   +   +  +I  L    V + F +  +  Y +S    ++    +NGE I++ +++  
Sbjct: 1   MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKISENELNVV 60

Query: 58  -KRIALLKLQKING--------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
            +R+      +            L++ A+Q LI+  +     EK G       +N     
Sbjct: 61  FQRLQRAYSLQRGQTLVGAKAEALKEEALQNLIMNHVLLDSAEKMGFNISPAEINQIITV 120

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
                         F            Q++A   +    +              +P   +
Sbjct: 121 LPAFQENGKFSPQRFQQFLYENSLTSAQFVAQ--LLQVFLIQQVEKGITGSAFVLPNEIK 178

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +  +    R ++ S      +++   +      ++ R            +      
Sbjct: 179 NNYELINQARDFRYMIISSAPFLKESKVTPEMIADYYQKHRESFKAPEKLSIAYLLLS-- 236

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
                                +  S +                    R+      +K  +
Sbjct: 237 --------------PEMILQQVSVSDHEIKQ-----------YYESNREGKSFNQVKDQI 271

Query: 289 SAQNTPTKIEKHEAEYVKKL 308
                  KI     +   +L
Sbjct: 272 KQSLLQQKINTLLTKKSDQL 291


>gi|301164816|emb|CBW24376.1| putative exported isomerase [Bacteroides fragilis 638R]
          Length = 517

 Score = 69.7 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/297 (11%), Positives = 75/297 (25%), Gaps = 41/297 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    V  + C+    +    A    +   ING+ IT  +  +                 
Sbjct: 1   MKKILVGTLTCLFG--AIAGHAQQDPVLMRINGQDITRSEFER----------------- 41

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
                                 +  +         R   L  +        Q  G +   
Sbjct: 42  ------------------FCHRNKPSGIAGKETLKRCADLFVDMKLKLSAAQKAGLDTVS 83

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
            +      +   +   ++      E        +MK  +    +    +F          
Sbjct: 84  DFRTEMENYYRALSRSYLTDSATDEAYAKKLYDQMKTRSAAGEVKVMRIFRYLPQTALPH 143

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG-KAQYLLESDLHPQFQNLLKKSQ 254
              + +I       +             +K  D        +L  S      +       
Sbjct: 144 HLREAQILMDSLYHVLETHPDIDFRTLVNKYSDDKKEFWMGWLQTSQ--EFEEVAFSLKD 201

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT-KIEKHEAEYVKKLRS 310
              + P+ T KG++ I +  +R++     ++  L  + +     +K    +V KL+S
Sbjct: 202 GEYSKPFFTPKGIQIIKVTGRREIPPFEQIRGELIHKLSRRPGTDKEIELWVNKLKS 258


>gi|16804258|ref|NP_465743.1| hypothetical protein lmo2219 [Listeria monocytogenes EGD-e]
 gi|224500981|ref|ZP_03669288.1| hypothetical protein LmonFR_00430 [Listeria monocytogenes FSL
           R2-561]
 gi|46396978|sp|Q8Y557|PRSA2_LISMO RecName: Full=Foldase protein prsA 2; Flags: Precursor
 gi|16411689|emb|CAD00297.1| lmo2219 [Listeria monocytogenes EGD-e]
          Length = 293

 Score = 69.7 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/304 (9%), Positives = 84/304 (27%), Gaps = 40/304 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +L +  ++ + S  +      +  T +   +T  ++   +          +    
Sbjct: 1   MKKKLILGLVMMMALFSLAACGGGGDVVKT-DSGDVTKDELYDAMK--------DKYGSE 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            VQ+L  E +   + + S    D            +        +              +
Sbjct: 52  FVQQLTFEKILGDKYKVSDEDVD------------KKFNEYKSQYGDQFSAVLTQSGLTE 99

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    Q  +  +V+          +  +    +                +          
Sbjct: 100 KSFKSQLKYNLLVQKATEANTDTSDKTLKKYYET---------------WQPDITVSHIL 144

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLK--K 252
              + + K+ E+      K  +  +++++      + G+        + P F+      K
Sbjct: 145 VADENKAKEVEQKLKDGEKFADLAKEYSTDTATKDNGGQLAPFGPGKMDPAFEKAAYALK 204

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA-QNTPTKIEKHEAEYVKKLRSN 311
           ++ + + P  TQ G   I +            K  + A         ++  + +KK   +
Sbjct: 205 NKGDISAPVKTQYGYHIIQMDKPATKTTFEKDKKAVKASYLESQLTTENMQKTLKKEYKD 264

Query: 312 AIIH 315
           A + 
Sbjct: 265 ANVK 268


>gi|145637308|ref|ZP_01792969.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae PittHH]
 gi|145269560|gb|EDK09502.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae PittHH]
          Length = 622

 Score = 69.7 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/383 (11%), Positives = 109/383 (28%), Gaps = 84/383 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           +  K+    +  I       + + F +  +  Y  ++ +      +NGEVI+  D   R 
Sbjct: 2   LIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYL-FSSNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  AL---LKLQKINGE-------------LEKIAVQELIVETLKKQEIE------------- 91
                ++ Q+                 L +  +  +I + L +Q ++             
Sbjct: 61  NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIINLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 92  ----KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
                          N  + +  +   L+++ ++S L      +         + I P  
Sbjct: 121 AIVTDPNFQVKGKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVPAQ 180

Query: 148 VK-------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
           VK                    D M K    + EI    +  +   V+   ++     + 
Sbjct: 181 VKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYIDLS 240

Query: 189 DNKLQNQGFV----------------------------QKRIKDAEESRLRLPKDCNKLE 220
            + +     V                            ++  K A E   +     +  +
Sbjct: 241 ADNISRNLQVTDVEIAQYYQDNKAQFMTQRLAHIQFANEQDAKVAYEELQKGANFADVAK 300

Query: 221 KFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL 278
             +  KI   + G   ++ E++L   F++          + P         + + +++  
Sbjct: 301 TKSLDKISGENGGDLGWVNENELPKAFEDAAAALQVGQYSQPINVDGNYHIVLVQERK-A 359

Query: 279 GGEIALKAYLSAQNTPTKIEKHE 301
                +KA ++     + +E   
Sbjct: 360 QSLENVKAQIADLVRKSLMESRY 382


>gi|154706549|ref|YP_001423952.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii Dugway
           5J108-111]
 gi|154355835|gb|ABS77297.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii Dugway
           5J108-111]
          Length = 522

 Score = 69.7 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/320 (10%), Positives = 83/320 (25%), Gaps = 41/320 (12%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSY-KSWAMSSRIRTTINGEVITDGDIS-- 57
           M   +   +  +I  L    V + F +  +  Y +S    ++    +NGE I++ +++  
Sbjct: 1   MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKISENELNVV 60

Query: 58  -KRIALLKLQKING--------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
            +R+      +            L++ A+Q LI+  +     EK G       +N     
Sbjct: 61  FQRLQRAYSLQRGQTLVGAKAEALKEEALQNLIMNHVLLDSAEKMGFNISPAEINQIITV 120

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
                         F            Q++A   +    +              +P   +
Sbjct: 121 LPAFQENGKFSPQRFQQFLYENSLMSAQFVAQ--LLQVFLIQQVEKGITGSAFVLPNEIK 178

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +  +    R ++ S      +++   +      ++ R            +      
Sbjct: 179 NNYELINQARDFRYMIISSAPFLKESKVTPEMIADYYQKHRESFKAPEKLSIAYLLLS-- 236

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
                             +  +  S +                    R+      +K  +
Sbjct: 237 --------------PEMIRQQVSVSDHEIKQ-----------YYESNREGKSFNQVKDQI 271

Query: 289 SAQNTPTKIEKHEAEYVKKL 308
                  KI     +   +L
Sbjct: 272 KQSLLQQKINTLLTKKSDQL 291


>gi|251794076|ref|YP_003008807.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           JDR-2]
 gi|247541702|gb|ACS98720.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           JDR-2]
          Length = 368

 Score = 69.7 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/316 (12%), Positives = 91/316 (28%), Gaps = 28/316 (8%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVS-----------YKSWAMSSRIRTTINGE 49
           M      S      LL    VL++  +                  + A    +  T    
Sbjct: 1   MLHTKRKSTWRRSALLVIAAVLVMTIMAACGGKKENEGGSTGLTFAGAGKGTVVATYKDG 60

Query: 50  VITDGDISKRIALLKLQKIN-------GELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
            +T+ + +K + +  + +          + ++  +Q+ +   +  ++  ++ +    +  
Sbjct: 61  TVTEAEFNKYLDIFNIMQPGYEQVIAIPQFKEQLLQQFVSYKILAKQATEATLKKADDET 120

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
           N            +A+   +  DK+          +        VV      K  + EM+
Sbjct: 121 NDQMKSFEDTLKTNADVKKTLDDKKVSTA-----DVRTYLNLMLVVVEHMNSKVTDDEMK 175

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKL--QNQGFVQKRIKDAEESRLRLPKDCNKLE 220
               K       V    I        D+    + +     R K+A+             +
Sbjct: 176 AEYEKNIGNYNPVTVRHILVATTDPADSTKTLRTKEEALARAKEAKAKLDAGGDWTALAK 235

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDL 278
           +++       S G+ +    SD    F+N           +P  T+ G   I + +KRD 
Sbjct: 236 EYSDDTGSKDSGGEYKDAKASDWVEGFKNAALTQPVGKIGDPVETEYGYHVI-LVEKRDQ 294

Query: 279 GGEIALKAYLSAQNTP 294
                +      +   
Sbjct: 295 VTYDKITDEQKQEVQS 310


>gi|172065726|ref|YP_001816438.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MC40-6]
 gi|171997968|gb|ACB68885.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MC40-6]
          Length = 262

 Score = 69.7 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 52/181 (28%), Gaps = 5/181 (2%)

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
             +    +++ +          +      +      R  ++                 ++
Sbjct: 69  DDATVDALLERELTHMPEPERADCERYYAQHPARFRRNDIVYASHVLFAVTDRVPLAPLR 128

Query: 200 KRIKDAEESRLRLPKDCNK-LEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ--NN 256
           +R + A    +  P        + ++       G    LL  D  P+F+  L  +     
Sbjct: 129 QRAERALADVVAAPDTFEAVARESSNCPSAQVGGSLGQLLRGDTVPEFEAALFDTDGLGV 188

Query: 257 TTNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                 T+ G   + I  +   D+         ++A  +    ++   +YV  L + A +
Sbjct: 189 LPKLVNTRFGFHIVRIERRVPGDIVPFDEAAGQIAAYLSERVRQRAMRQYVAILAAAARV 248

Query: 315 H 315
            
Sbjct: 249 E 249


>gi|237714321|ref|ZP_04544802.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D1]
 gi|262408154|ref|ZP_06084701.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645120|ref|ZP_06722845.1| PPIC-type PPIASE domain protein [Bacteroides ovatus SD CC 2a]
 gi|294809728|ref|ZP_06768415.1| PPIC-type PPIASE domain protein [Bacteroides xylanisolvens SD CC
           1b]
 gi|229445485|gb|EEO51276.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D1]
 gi|262353706|gb|EEZ02799.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292639544|gb|EFF57837.1| PPIC-type PPIASE domain protein [Bacteroides ovatus SD CC 2a]
 gi|294443062|gb|EFG11842.1| PPIC-type PPIASE domain protein [Bacteroides xylanisolvens SD CC
           1b]
 gi|295088067|emb|CBK69590.1| Parvulin-like peptidyl-prolyl isomerase [Bacteroides xylanisolvens
           XB1A]
          Length = 460

 Score = 69.7 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/280 (10%), Positives = 83/280 (29%), Gaps = 13/280 (4%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI--ALLKLQ 66
           +  F+        L++     + +Y    +   +   +  E I   D+ +    AL   +
Sbjct: 1   MKKFVN-FRFVVTLVLAIFANVATYAQDNVVDEVVWVVGDEAILKSDVEEARMDALYNGR 59

Query: 67  KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
           + +G+   +  +E+ V+ L   + +   I      +                      + 
Sbjct: 60  RFDGDPYCVIPEEIAVQKLFLHQAKLDSIEVSEAEIIQRVDMMTNMYIQQIGSREKMEEY 119

Query: 127 QGIGDNHFKQYLAIQS---IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                   ++ L   +   +    ++   + +      E+    + +   ++     +  
Sbjct: 120 FNKTSTQIRETLRDNARDGLTVQKMQQKLVGEIKVTPAEVRRYFKDLPQDSIPYIPTQVE 179

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-----SKIHDVSIGKAQYLL 238
           +  I          ++   K   +   R+ K        A      K   +  G+  ++ 
Sbjct: 180 VQIITLQPKIPISEIEDVKKTLRDYTDRVTKGEIDFSTLARLYSEDKASAIKGGECGFMG 239

Query: 239 ESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKR 276
              + P + N+    +     +    ++ G   I + +KR
Sbjct: 240 RGMMDPAYANVAFSLQDPKKVSKIVESEFGFHIIQLIEKR 279


>gi|328551773|gb|AEB22265.1| hypothetical protein BAMTA208_00365 [Bacillus amyloliquefaciens
           TA208]
 gi|328910033|gb|AEB61629.1| putative protein secretion PrsA [Bacillus amyloliquefaciens LL3]
          Length = 296

 Score = 69.7 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/315 (11%), Positives = 94/315 (29%), Gaps = 36/315 (11%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRI-RTTINGEVITDGDISKRIALLKLQKI 68
              + ++    ++    +   ++    A SS     TI  + IT  D  K++        
Sbjct: 4   RTLLTIIVAALLVCSVAVAYKLTKSQAAGSSEESIATIGDKHITRQDWMKKM-------- 55

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             E  K  ++++I   + ++  +K+ +T  ++ +   F+          ED         
Sbjct: 56  EDEYGKSTLEDMINTQVVEELAKKNKLTVSNSELEREFLLIKAVNNSFYEDSHITEK--- 112

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                       Q  +  +++          + E+ +   K K +   +   R     + 
Sbjct: 113 --------EWKDQIRYNILLEELLTKDIDISDKEMQSFYNKNKELYQFDDSYRIRHIVVK 164

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD---LHPQ 245
             +  ++           + +     +    E+   +      G   ++ E+        
Sbjct: 165 SKEEADRVLA--------DLKGGSSFEAVAAERSTDRYTSQYGGDLGFVTENQENIPPAY 216

Query: 246 FQNLLKKSQNNTT-NPYVTQKGVEYIAICDKRDLGGEI--ALKAYLSAQNTPTKIEKHEA 302
                   +N  +  P     G   I + +K          +K+ +  Q    ++     
Sbjct: 217 ITEAKNLKENEWSAEPIKVSSGYAVIQLKEKLKARTFSYNEVKSQIRRQIAMDQLGDKAT 276

Query: 303 EYVKKLRSNAIIHYY 317
             VK L   A + ++
Sbjct: 277 --VKTLWKEAGVSWF 289


>gi|308171963|ref|YP_003918668.1| protein secretion PrsA-like protein [Bacillus amyloliquefaciens DSM
           7]
 gi|307604827|emb|CBI41198.1| putative protein secretion PrsA homolog [Bacillus amyloliquefaciens
           DSM 7]
          Length = 296

 Score = 69.7 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/315 (11%), Positives = 94/315 (29%), Gaps = 36/315 (11%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRI-RTTINGEVITDGDISKRIALLKLQKI 68
              + ++    ++    +   ++    A SS     TI  + IT  D  K++        
Sbjct: 4   RTLLTIIVAALLVCSVAVAYKLTKSQAAGSSEESIATIGDKHITRQDWMKKM-------- 55

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             E  K  ++++I   + ++  +K+ +T  ++ +   F+          ED         
Sbjct: 56  EDEYGKSTLEDMINTQVVEKLAKKNKLTVSNSELEREFLLIKAVNNSFYEDSHITEK--- 112

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                       Q  +  +++          + E+ +   K K +   +   R     + 
Sbjct: 113 --------EWKDQIRYNILLEELLTKDIDISDKEMQSFYNKNKELYQFDDSYRIRHIVVK 164

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD---LHPQ 245
             +  ++           + +     +    E+   +      G   ++ E+        
Sbjct: 165 SKEEADRVLA--------DLKGGSSFEAVAAERSTDRYTSQYGGDLGFVTENQENIPPAY 216

Query: 246 FQNLLKKSQNNTT-NPYVTQKGVEYIAICDKRDLGGEI--ALKAYLSAQNTPTKIEKHEA 302
                   +N  +  P     G   I + +K          +K+ +  Q    ++     
Sbjct: 217 ITEAKNLKENEWSAEPIKVSSGYAVIQLKEKLKARTFSYNEVKSQIRRQIAMDQLGDKAT 276

Query: 303 EYVKKLRSNAIIHYY 317
             VK L   A + ++
Sbjct: 277 --VKTLWKEAGVSWF 289


>gi|329120541|ref|ZP_08249205.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327461280|gb|EGF07612.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 290

 Score = 69.7 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/291 (9%), Positives = 83/291 (28%), Gaps = 11/291 (3%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVET 84
                +++  S +++++   T+NG  I   ++ + +  L+ Q            EL+ + 
Sbjct: 6   LVQALVLAVLSGSLAAQTLVTVNGSKIDSSEVDRYVKALRAQNPQVPDSPEIRSELLGDI 65

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
           + +  + +       +        +      + +        +  G     +    + + 
Sbjct: 66  VTRTIVVQEARRLKLDQGKE----YKAAIENARKAAQKEGADKKPGFKQQWEDYQNELLN 121

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
              V +    +  +        ++          +    + +   +  +      K  K 
Sbjct: 122 QAFVAHIVRTQPVSDAEARKNYEEMQNFYKGSSEVQIGEILTQKKDDAEKAIKDLKANKP 181

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT-TNPYVT 263
             E+  +   D    +          +       E+   P +  +    +    T P   
Sbjct: 182 FVETARKYSADPQVKQTGGINKEYDPLKDL----EAAAPPVYNAVKDLKKGQFTTTPVEG 237

Query: 264 QKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                   I DKR    +I     + A  T + +++   + +  L   A I
Sbjct: 238 NGAYGVFYINDKR--SVQIPAFEQIKANITRSLMQQKVNQAISSLTEKATI 286


>gi|91790420|ref|YP_551372.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp.
           JS666]
 gi|91699645|gb|ABE46474.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp.
           JS666]
          Length = 289

 Score = 69.7 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 58/184 (31%), Gaps = 15/184 (8%)

Query: 147 VVKNDFMLKYG---NLEMEIPANKQKMKNIT--VREYLIRTVLF--SIPDNKLQNQGFVQ 199
           V++     +       E E     +  K      +   +R +LF  +   N        +
Sbjct: 93  VIETMVDREVTTPQPTEEEGRRYYEAHKPQFVVGQALHVRHILFAVTPGVNVQALTVHAE 152

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN 259
           + + +     +R  +      + ++       G   ++   D  P+    L   Q+  T 
Sbjct: 153 RALLELSHKGVRPERFAQLAAELSNCPSSAQGGDLGWIGPDDCAPELATELFHLQHAQTG 212

Query: 260 ------PYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
                  + T+ G   I + ++R         ++  ++A  T     +   +Y+  L   
Sbjct: 213 TGVHPRLFHTRFGFHIIDVLERRSGRQPAYEEVRERIAALLTMQSRARALHQYMCLLVGE 272

Query: 312 AIIH 315
           A + 
Sbjct: 273 AEVE 276


>gi|298480175|ref|ZP_06998373.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides sp.
           D22]
 gi|298273456|gb|EFI15019.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides sp.
           D22]
          Length = 460

 Score = 69.7 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/280 (10%), Positives = 83/280 (29%), Gaps = 13/280 (4%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI--ALLKLQ 66
           +  F+        L++     + +Y    +   +   +  E I   D+ +    AL   +
Sbjct: 1   MKKFVN-FRFVVTLVLAIFANVATYAQDNVVDEVVWVVGDEAILKSDVEEARMDALYNGR 59

Query: 67  KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
           + +G+   +  +E+ V+ L   + +   I      +                      + 
Sbjct: 60  RFDGDPYCVIPEEIAVQKLFLHQAKLDSIEVSEAEIIQRVDMMTNMYIQQIGSREKMEEY 119

Query: 127 QGIGDNHFKQYLAIQS---IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                   ++ L   +   +    ++   + +      E+    + +   ++     +  
Sbjct: 120 FNKTSTQIRETLRDNARDGLTVQKMQQKLVGEIKVTPAEVRRYFKDLPQDSIPYIPTQVE 179

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-----SKIHDVSIGKAQYLL 238
           +  I          ++   K   +   R+ K        A      K   +  G+  ++ 
Sbjct: 180 VQIITLQPKIPISEIEDVKKTLRDYTDRVTKGEIDFSTLARLYSEDKASAIKGGECGFMG 239

Query: 239 ESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKR 276
              + P + N+    +     +    ++ G   I + +KR
Sbjct: 240 RGMMDPAYANVAFSLQDPKKVSKIVESEFGFHIIQLIEKR 279


>gi|326330421|ref|ZP_08196729.1| LigA [Nocardioidaceae bacterium Broad-1]
 gi|325951696|gb|EGD43728.1| LigA [Nocardioidaceae bacterium Broad-1]
          Length = 345

 Score = 69.7 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/291 (9%), Positives = 62/291 (21%), Gaps = 21/291 (7%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGEL----------EKIAVQELIVETLKKQE 89
                  +G V+T  D+ +R+ +L       E              A    +   L    
Sbjct: 42  DDAAFEYDGTVVTRDDLDERVEVLGALYGIKEPGKKDGRAAFRRDTAKAVAVSMVLDDAA 101

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
            +K     D    +      A   G    +  + L                +     ++ 
Sbjct: 102 RDKGVAVSDKRARDTLDQMVASQLGTDPREAFTELLADFGVTEAAVLDEVKRQQAVALLF 161

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
                          A      +           L +I     ++   V +R        
Sbjct: 162 EKITKDAVADVTAADARDYYEAHPDRFMTPEGRELRNIVVRTDKDAQAVVQR-------A 214

Query: 210 LRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGV 267
            +           +         G    +  S L   + +            P  TQ G 
Sbjct: 215 RKGEDFAALARANSLDDATRDQGGALGVVPASSLAGDYAKAAFGARSGAVFGPVRTQFGW 274

Query: 268 EYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
               +             ++          +  +   ++++     A + Y
Sbjct: 275 NVGQVVRIVPGKEPTFDQVEDQALDVVRSERALETWRDWLEGRIKKADVEY 325


>gi|189463690|ref|ZP_03012475.1| hypothetical protein BACINT_00021 [Bacteroides intestinalis DSM
           17393]
 gi|189438640|gb|EDV07625.1| hypothetical protein BACINT_00021 [Bacteroides intestinalis DSM
           17393]
          Length = 528

 Score = 69.7 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/316 (9%), Positives = 79/316 (25%), Gaps = 45/316 (14%)

Query: 1   MTSKVFTSL-SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKR 59
           M S+ +  L    I ++ +   +I  C+        +A    +   ING+ I   +    
Sbjct: 1   MFSRYYIVLFQKKIVMIRSGLTIIFLCL----GLTVFAQQDPMLMRINGKDILRSEFEYI 56

Query: 60  IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                       +E+  + E +   +                          N  L    
Sbjct: 57  YN---KNNALSGIEQKTLNEYVDLFV--------------------------NFKLKVAA 87

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
             +             +    Q     +              +     Q+   + V    
Sbjct: 88  AEAMGLDTTRAFREELEGYRRQLAKTYLTDETVSELAARQIYDKMKANQRAGQVRVSHIF 147

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
                 +        +  +       +  +                          ++  
Sbjct: 148 KSLPQTATSHLLRTTETRMDSLYTALQNGQADFDACVRNFSDEKKSF---------WVSW 198

Query: 240 SDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKI 297
             +  +F++   K      + P+ T +G+  + + +++D+     +K   +  Q     +
Sbjct: 199 LQMPAEFEDTVFKMKPGEISRPFFTPQGIHIVKVLERKDILPFEDVKDEIIRRQTRRHGM 258

Query: 298 EKHEAEYVKKLRSNAI 313
           +K     V+KL+    
Sbjct: 259 DKGTESLVEKLKKEYQ 274


>gi|296136914|ref|YP_003644156.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia
           K12]
 gi|295797036|gb|ADG31826.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia
           K12]
          Length = 226

 Score = 69.3 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 17/178 (9%), Positives = 44/178 (24%), Gaps = 4/178 (2%)

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
            +++   V+++D       +        Q    +   + +    +               
Sbjct: 33  DETLLEAVLQHDVQTPEPGVAECERYYAQHADALRQGDMVEADHILFAVTPSTPIDALRH 92

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKKSQNNT 257
           K                      ++       G    L      P+F    +        
Sbjct: 93  KAEDTLYALMADSSGFAEMARGLSNCPSAQIGGNLGQLTADQCVPEFWQALMEHAEPGVL 152

Query: 258 TNPYVTQKGVEYIAI--CDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                T+ G+  + I    +  L    A++A ++       + +    Y + L  +A 
Sbjct: 153 PRLVRTRFGLHIVRIARIARGQLPPFEAVQAQIAQTLRQQSLVRALQLYAEDLEQHAT 210


>gi|223934638|ref|ZP_03626558.1| PpiC-type peptidyl-prolyl cis-trans isomerase [bacterium Ellin514]
 gi|223896593|gb|EEF63034.1| PpiC-type peptidyl-prolyl cis-trans isomerase [bacterium Ellin514]
          Length = 325

 Score = 69.3 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 73/280 (26%), Gaps = 28/280 (10%)

Query: 37  AMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGIT 96
           +  + +   + G  IT  D+   +  + LQ         A+ EL+ +   K   E +G+ 
Sbjct: 55  SPGNTVVGVVQGVNITKDDL---LKDMWLQNAP-----AALDELLRQRAVKCAAESAGVK 106

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
             ++       +  +     + + +  L        H+++      +    ++   M   
Sbjct: 107 ITTDDFQAKANEDIKR--THSSNLNEMLQHHNTTPAHYQRICEGNMLLEAYIRQSIMT-- 162

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
                 I A            Y+      SIP  K Q     +K+               
Sbjct: 163 ------IDAKDYADWVKVRYIYIADAGYNSIPAKKEQTSIETKKKADQILTKIRNGTDFA 216

Query: 217 NKLEKFASKIHD-----VSIGKAQYLLESDL---HPQFQNLLKKSQNNTTNPYVTQKGVE 268
              ++F     +        G   +   S           + K  Q   + P  +  G  
Sbjct: 217 KLADEFTDSPENVVDGKKQGGYMGWRARSWTQFTPAFEAAVFKLKQGEVSEPIRSDFGYY 276

Query: 269 YIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
              +               L       K+       ++ +
Sbjct: 277 LAKVEA--TGLEVKDKDPELKKLIADGKVRPLIDSTLENI 314


>gi|153209250|ref|ZP_01947306.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177']
 gi|120575458|gb|EAX32082.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177']
          Length = 522

 Score = 69.3 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/320 (10%), Positives = 82/320 (25%), Gaps = 41/320 (12%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSY-KSWAMSSRIRTTINGEVITDGDIS-- 57
           M   +   +  +I  L    V + F +  +  Y +S    ++    +NGE I++ +++  
Sbjct: 1   MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKISENELNVV 60

Query: 58  -KRIALLKLQKING--------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
            +R+      +            L++ A+Q LI+  +     EK G       +N     
Sbjct: 61  FQRLQRAYSLQRGQTLVGAKAEALKEEALQNLIMNHVLLDSAEKMGFNISPAEINQIITV 120

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
                         F            Q++A   +    +              +P   +
Sbjct: 121 LPAFQENGKFSPQRFQQFLYENSLTSAQFVAQ--LLQVFLIQQVEKGITGSAFVLPNEIK 178

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +  +    R ++ S      +++   +      ++ R            +      
Sbjct: 179 NNYELINQARDFRYMIISSAPFLKESKVTPEMIADYYQKHRESFKAPEKLSIAYLLLS-- 236

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
                                +  S +                    R+      +K  +
Sbjct: 237 --------------PEMILQQVSVSDHEIKQ-----------YYESNREGKSFNQVKDQI 271

Query: 289 SAQNTPTKIEKHEAEYVKKL 308
                  KI     +   +L
Sbjct: 272 KQSLLQQKINTLLTKKSDQL 291


>gi|47097568|ref|ZP_00235100.1| protein export protein [Listeria monocytogenes str. 1/2a F6854]
 gi|224498964|ref|ZP_03667313.1| hypothetical protein LmonF1_04383 [Listeria monocytogenes Finland
           1988]
 gi|254826892|ref|ZP_05231579.1| export protein [Listeria monocytogenes FSL N3-165]
 gi|254831344|ref|ZP_05235999.1| hypothetical protein Lmon1_08297 [Listeria monocytogenes 10403S]
 gi|254899079|ref|ZP_05259003.1| hypothetical protein LmonJ_04684 [Listeria monocytogenes J0161]
 gi|254912780|ref|ZP_05262792.1| protein export protein [Listeria monocytogenes J2818]
 gi|254937107|ref|ZP_05268804.1| export protein [Listeria monocytogenes F6900]
 gi|255025820|ref|ZP_05297806.1| hypothetical protein LmonocytFSL_04835 [Listeria monocytogenes FSL
           J2-003]
 gi|284802666|ref|YP_003414531.1| hypothetical protein LM5578_2422 [Listeria monocytogenes 08-5578]
 gi|284995808|ref|YP_003417576.1| hypothetical protein LM5923_2373 [Listeria monocytogenes 08-5923]
 gi|47014054|gb|EAL05055.1| protein export protein [Listeria monocytogenes str. 1/2a F6854]
 gi|258599272|gb|EEW12597.1| export protein [Listeria monocytogenes FSL N3-165]
 gi|258609709|gb|EEW22317.1| export protein [Listeria monocytogenes F6900]
 gi|284058228|gb|ADB69169.1| hypothetical protein LM5578_2422 [Listeria monocytogenes 08-5578]
 gi|284061275|gb|ADB72214.1| hypothetical protein LM5923_2373 [Listeria monocytogenes 08-5923]
 gi|293590774|gb|EFF99108.1| protein export protein [Listeria monocytogenes J2818]
          Length = 293

 Score = 69.3 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/304 (9%), Positives = 84/304 (27%), Gaps = 40/304 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +L +  ++ + S  +      +  T +   +T  ++   +          +    
Sbjct: 1   MKKKLILGLVMMMALFSLAACGGGGDVVKT-DSGDVTKDELYDAMK--------DKYGSE 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            VQ+L  E +   + + S    D            +        +              +
Sbjct: 52  FVQQLTFEKILGDKYKVSDEDVD------------KKFNEYKSQYGDQFSAVLAQSGLTE 99

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    Q  +  +V+          +  +    +                +          
Sbjct: 100 KSFKSQLKYNLLVQKATEANTDTSDKTLKKYYET---------------WQPDITVSHIL 144

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLK--K 252
              + + K+ E+      K  +  +++++      + G+        + P F+      K
Sbjct: 145 VADENKAKEVEQKLKDGEKFADLAKEYSTDTATKDNGGQLAPFGPGKMDPAFEKAAYALK 204

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA-QNTPTKIEKHEAEYVKKLRSN 311
           ++ + + P  TQ G   I +            K  + A         ++  + +KK   +
Sbjct: 205 NKGDISAPVKTQYGYHIIQMDKPATKTTFEKDKKAVKASYLESQLTTENMQKTLKKEYKD 264

Query: 312 AIIH 315
           A + 
Sbjct: 265 ANVK 268


>gi|319943847|ref|ZP_08018128.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis
           ATCC 51599]
 gi|319743080|gb|EFV95486.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis
           ATCC 51599]
          Length = 649

 Score = 69.3 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 42/166 (25%), Gaps = 8/166 (4%)

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
                    E E+ A  QK +N        +     +   +  +    +K    AE    
Sbjct: 242 MLPKDVEPSEKELEAYYQKHRNQFNEAEERQASHILLKVPEGADAAAKEKVKARAEALLA 301

Query: 211 RLPKDCNKLEKFASKIH-----DVSIGKAQYLLESDLHPQFQNLLKKSQN-NTTNPYVTQ 264
                 +K  + A K           G   +     +   F +          T+   T+
Sbjct: 302 EAKAHPDKFAELAKKNSEDPGSAEQGGDLGFFERDTMVKPFADAAFGLDKPGFTDVVETE 361

Query: 265 KGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
            G   I +   +         +K  L       +  +   +  + L
Sbjct: 362 YGFHVIQVTGVKGGGEKPLAEVKPQLVKMWREEEAARRYNQAAEAL 407



 Score = 43.5 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 27/285 (9%), Positives = 71/285 (24%), Gaps = 21/285 (7%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI-------------AL 62
           L    ++  F    I  Y           +++GE +      +                 
Sbjct: 15  LLLVLIMPAFVFFGISGYDRMFGDGDSVASVDGEPVPRAYFEQTYRQQVQQMQQMMGDNY 74

Query: 63  LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
                 N       ++ LI       +  ++ IT     +    +    +   +   F  
Sbjct: 75  DAAVFDNQATRMEVLENLITRQALLADARRARITVTPGEIQKAILDQHADLRDANGKFDI 134

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
              K+ +  N          +   +          +  M        +        ++RT
Sbjct: 135 EGYKRLLAANGLTPAQYEAQMGQMLAVGAVERAVADSAMVPQTVVDGVFASQENRRVVRT 194

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
           +L +  D +       ++     +                +  I  V++ +   L +   
Sbjct: 195 LLVTPRDYEKGLAPTDEQLKAYYDAHASAFDLPE------SVDISYVALRRTDMLPKDVE 248

Query: 243 H--PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK 285
               + +   +K +N        Q     + + +  D   +  +K
Sbjct: 249 PSEKELEAYYQKHRNQFNEAEERQASHILLKVPEGADAAAKEKVK 293


>gi|296125998|ref|YP_003633250.1| SurA domain protein [Brachyspira murdochii DSM 12563]
 gi|296017814|gb|ADG71051.1| SurA domain protein [Brachyspira murdochii DSM 12563]
          Length = 317

 Score = 69.3 bits (167), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 85/295 (28%), Gaps = 20/295 (6%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKI---NGELEKIAVQELIVETLKKQEIEKSGIT 96
           + I   +    IT  D   R + L LQ         + +  ++L+ E +   ++++    
Sbjct: 25  NSIVGIVGSMPITYEDFISRKSFLTLQAKSIGQKINDDMVYKDLVEERIMYLKLKEYNYV 84

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
            + N V+      A+   ++ + F+  L  +GI    ++  +  Q    ++     +   
Sbjct: 85  IEENDVSRRLENIAKQYNMTLDQFAKQLMAEGISYEEYRNSIRKQIAMENL-NGLVVNNT 143

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI--KDAEESRLRLPK 214
              + E        K+ +  E      L  I           +K+   K       R   
Sbjct: 144 EITDEEADEFYNNTKDKSAFEVDTLVQLSWIFFKAATFTEKGEKQELAKQVRGMAARGQD 203

Query: 215 DCNKLEKFASK-IHDVSIGKAQYL-----LESDLHPQFQ-----NLLKKSQNNTTNPYV- 262
                 K++       + G   Y       +  L  Q                 ++    
Sbjct: 204 FAELARKYSDDNATKNNGGDLGYNLLYDAGKRSLPAQINAGLNLAKRGYKVGTVSSVREL 263

Query: 263 TQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
             KG   + I          +++  +       ++     +++ +      +  Y
Sbjct: 264 VGKGFYIVKIVGIE--KDMESIRTRVKNYLGEMQMRDSFVKWLDEETKRVSVQLY 316


>gi|217963619|ref|YP_002349297.1| foldase protein PrsA [Listeria monocytogenes HCC23]
 gi|217332889|gb|ACK38683.1| foldase protein PrsA [Listeria monocytogenes HCC23]
          Length = 293

 Score = 69.3 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/304 (9%), Positives = 84/304 (27%), Gaps = 40/304 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +L +  ++ + S  +      +  T +   +T  ++   +          +    
Sbjct: 1   MKKKLILGLVMVMALFSLAACGGGGDVVKT-DSGDVTKDELYDAMK--------DKYGSE 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            VQ+L  E +   + + S    D            +        +              +
Sbjct: 52  FVQQLTFEKILGDKYKVSDEDVD------------KKFNEYKSQYGDQFSAVLAQSGLTE 99

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    Q  +  +V+          +  +    +                +          
Sbjct: 100 KSFKSQLKYNLLVQKATEANTDTSDKVLKKYYET---------------WQPDITVSHIL 144

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLK--K 252
              + + K+ E+      K  +  +++++      + G+        + P F+      K
Sbjct: 145 VADENKAKEVEQKLKDGAKFADLAKEYSTDTATKENGGQLAPFGPGKMDPAFEKAAYALK 204

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA-QNTPTKIEKHEAEYVKKLRSN 311
           ++ + + P  TQ G   I +            K  + A         ++  + +KK   +
Sbjct: 205 NKGDISAPVKTQYGYHIIQMDKPATKTTFEKDKKAVKASYLESQLTTENMQKTLKKEYKD 264

Query: 312 AIIH 315
           A + 
Sbjct: 265 ANVK 268


>gi|190573026|ref|YP_001970871.1| putative peptidyl-prolyl cis-trans isomerase [Stenotrophomonas
           maltophilia K279a]
 gi|190010948|emb|CAQ44557.1| putative peptidyl-prolyl cis-trans isomerase [Stenotrophomonas
           maltophilia K279a]
          Length = 651

 Score = 69.3 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/194 (9%), Positives = 44/194 (22%), Gaps = 4/194 (2%)

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
             D +   D Q             Q+    +   +                 + +    +
Sbjct: 222 PADTAPVTDAQIKQWYDSHGKDFRQAESVSLEYVEINGANLPAPTAADEATLRKRYEDEK 281

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQ 235
                          +   G   K  K A E++          +  +         G   
Sbjct: 282 AKFTTPEQRQASHILITGDGAEAKANKIAAEAKAAGADFAALAKANSEDPGSKGQGGDLG 341

Query: 236 YLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP 294
           ++    +   F++        +   P  T+ G   I +   R   G+      +      
Sbjct: 342 WVERGAMVKPFEDALFAAKAGDVIGPVKTEFGYHIIKVAAVRGGQGKS--FEEVRDTLAA 399

Query: 295 TKIEKHEAEYVKKL 308
            +++        +L
Sbjct: 400 EQLKADGERGFNEL 413



 Score = 47.0 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/303 (9%), Positives = 77/303 (25%), Gaps = 40/303 (13%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTI-------------- 46
           M  K+    S +I  +    ++I F  V   SY     +      +              
Sbjct: 1   MLQKLRDKTSGWIVTVILGLLMIPFLFVIDNSYLGGVGAQN-VAKVSAPPTWWRSAPSWW 59

Query: 47  ------NGEVITDGDISKRIALLKLQKINGELEK-------------IAVQELIVETLKK 87
                     I+  D   R    ++++   + E                + +LI E + +
Sbjct: 60  PVRMLWQHHEISAQDFRTRFEQERMRERQQQGENFDPRAFESTENKLAVLDQLIDEQVVR 119

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
              E++G+      V  +            +    F +                + + ++
Sbjct: 120 LVGEQAGVVIGDGAVREYIATIPAF----LDSNGKFNENNYRLALAGGNPPRTPTQFQEL 175

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           V+           ++      + +   + + L  T    +                  ++
Sbjct: 176 VRESLQQSVIPSGLQNSGFVTQSETERLLKLLGETRDVELAALPEVPADTAPVTDAQIKQ 235

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGV 267
                 KD  + E  + +  +++         +      +   +  +   T P   Q   
Sbjct: 236 WYDSHGKDFRQAESVSLEYVEINGANLP-APTAADEATLRKRYEDEKAKFTTPEQRQAS- 293

Query: 268 EYI 270
             +
Sbjct: 294 HIL 296


>gi|149179628|ref|ZP_01858140.1| peptidyl-prolyl isomerase [Planctomyces maris DSM 8797]
 gi|148841534|gb|EDL55985.1| peptidyl-prolyl isomerase [Planctomyces maris DSM 8797]
          Length = 217

 Score = 69.3 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 7/158 (4%)

Query: 44  TTINGEVITDGDISKRIALLKLQKIN-------GELEKIAVQELIVETLKKQEIEKSGIT 96
             +NG VIT  D+ +R+ALL               +    ++ LI ETL+ Q  E   I 
Sbjct: 59  AVVNGYVITGTDLDQRLALLVNANQTEIPAEELQRVRAQVLRNLIDETLQIQAAEAEEIV 118

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
                V   F + A       ED  ++L   G      K+ +  +  W  +++       
Sbjct: 119 ISDAEVEQTFARVAAQNNQRPEDMENYLASIGSSSASLKRQIRGELAWQRLLRQKVSFFV 178

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                E+    ++++     +      +F     +   
Sbjct: 179 NVSAEEVNELMERLEAAKGTDEYWLWEIFMSATPENDA 216


>gi|313204350|ref|YP_004043007.1| ppic-type peptidyL-prolyl cis-trans isomerase [Paludibacter
           propionicigenes WB4]
 gi|312443666|gb|ADQ80022.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paludibacter
           propionicigenes WB4]
          Length = 647

 Score = 69.3 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/364 (9%), Positives = 83/364 (22%), Gaps = 71/364 (19%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--INGELEKIAV- 77
           V+       +        S  +  TING+ ++  +                  L++    
Sbjct: 5   VIAFLTFWALSVGSFAQTSDPVLMTINGKPVSKSEFEYIYNKNNTNNSLDKKTLDEYVEL 64

Query: 78  -------------------QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
                              +  I E    +         D         +    +    +
Sbjct: 65  FINFKLKVEEAKKQGIDTTEAFISELSGYRSQLTRPYLTDPKVDEILLREAYERSKEDVD 124

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQS--IWPDVVKNDFMLKYGNLEMEIPANKQ-------- 168
                +                +   IW  +   +F      +  +  A K         
Sbjct: 125 VSHILIRIPQNALPADTLKAWNEINTIWRRLEHENFSRVAKEISQDESAEKNSGRLGWIS 184

Query: 169 -----------------------------------KMKNITVREYLIRTVLFSIPDNKLQ 193
                                                +  T+ + L+  ++         
Sbjct: 185 VFRTVYPFESAAYNTPVGSYSKPIRTAFGYHIVKVHARRKTLGDVLVSHIMILTNKGDDF 244

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLK- 251
                +  I       +          K++         G+  +     + P+F+     
Sbjct: 245 LNKRAKTTIDSLYRRLIAGEDFGALARKYSQDKTTSSKNGELPWFGSGRMVPEFEKAAFA 304

Query: 252 -KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN-TPTKIEKHEAEYVKKLR 309
            K+    + P  T  G   + + DK+ +     LKA L  +     + +  +  ++ KLR
Sbjct: 305 LKNVGEISKPIQTNGGWHILKLLDKKGIASFDELKADLERKVKRDDRSKSGQQVFLAKLR 364

Query: 310 SNAI 313
           +   
Sbjct: 365 NEYN 368


>gi|290769658|gb|ADD61438.1| putative protein [uncultured organism]
          Length = 520

 Score = 69.3 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/299 (7%), Positives = 82/299 (27%), Gaps = 38/299 (12%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           ++    +  +F  +        A    +   ING+ +   +  +           G   +
Sbjct: 1   MVLMVRLFWVFFFLGFG-LAVSAQDDPVLMRINGKEVLRSEFERSYNKGGTSVGAG---R 56

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
            A+   + + +  +   ++      +T   F  +         + + +  +        +
Sbjct: 57  KALDAYVNKFIDFRLKIEAAEVVGLDTSRVFQKEQDEYRRCLIKSYLTDEETAEQEARQY 116

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
              +        V                              YL + +           
Sbjct: 117 YDKMKSGRRAGRVYVKHIFK-----------------------YLPQNISGHTLREMESR 153

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              + + +     +         +                 ++    +  +F++++   +
Sbjct: 154 MDSIYRALAKEGGAVPSFDACVEQFSDEKKAF---------WVGWLQMPVEFEDIVFGLN 204

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKHEAEYVKKLRSN 311
               + P++T +G+  + + +++++     +K   +  Q     ++K    +V KL+  
Sbjct: 205 AGEISRPFLTPQGIHIVKVLEQQEILPFERMKDKIIRCQTRRHGMDKGTRAFVDKLKKE 263


>gi|83718610|ref|YP_442650.1| peptidyl-prolyl cis-trans isomerse D [Burkholderia thailandensis
           E264]
 gi|83652435|gb|ABC36498.1| peptidyl-prolyl cis-trans isomerse D, putative [Burkholderia
           thailandensis E264]
          Length = 632

 Score = 69.3 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 19/305 (6%), Positives = 63/305 (20%), Gaps = 29/305 (9%)

Query: 26  CIVPIVSYKSWAMSSRIRT---TINGEVITDGDISKRIALLKLQ-KINGELEKIAVQELI 81
                 + +   +S  +       +G      D  +   +L +Q     + ++     L 
Sbjct: 95  LTASDGAVRQTLLSDPVVASLKKADG----SFDAERYTQMLAMQGMTPDQYQERVRYNLA 150

Query: 82  VETLKKQEIEKSGITFDSNTV-----------NYFFVQHARNTGLSAEDFSSFLDKQGIG 130
           ++ +    +  +                        ++ A          +         
Sbjct: 151 LQQIPASIVSSAFTPKSVARRLTELAEQQREVQQMMLKSADYATKVQPTDAQISAYYDAH 210

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
              F    A    +    +          ++++             +  +R     I   
Sbjct: 211 KQAFATREAATIQYLVYSQAAAAAAAQPSDIDVKKYYDGNIARYRTDAQVRVSHIFIAAA 270

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-----SKIHDVSIGKAQYLLESDLHPQ 245
           K  +          AE+    +    ++  + A             G   ++        
Sbjct: 271 KDASAADKAAAKAKAEQLLAEVKAHPDQFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGG 330

Query: 246 FQNLLKK---SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEA 302
                      +   +       G   +   D +    +      +         ++  A
Sbjct: 331 AAFDDAAFALKKGEISGVVQGDFGFHILKATDLKPAVVKPLA--EVKDSIVADLKQQFAA 388

Query: 303 EYVKK 307
           +    
Sbjct: 389 KAFAD 393



 Score = 50.4 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/224 (8%), Positives = 61/224 (27%), Gaps = 16/224 (7%)

Query: 15  LLTTYFVLII-FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN---- 69
           +     +++    IV I  ++ +   S     +NG  IT  +    +     Q       
Sbjct: 1   MFFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGMLRQQVDQARQMLGA 60

Query: 70  ---------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQHARNTGLSAE 118
                     E  +  +  LI +     E ++  +T     V           +   +  
Sbjct: 61  QFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLTASDGAVRQTLLSDPVVASLKKADG 120

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
            F +    Q +           + +  ++          +      +  +++  +  ++ 
Sbjct: 121 SFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKSVARRLTELAEQQR 180

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            ++ ++    D   + Q    +     +  +           ++
Sbjct: 181 EVQQMMLKSADYATKVQPTDAQISAYYDAHKQAFATREAATIQY 224


>gi|307298526|ref|ZP_07578329.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306915691|gb|EFN46075.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 733

 Score = 69.3 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/243 (8%), Positives = 61/243 (25%), Gaps = 11/243 (4%)

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           +     + LI +        ++G+   +  V+        +  ++ E+  S +  Q    
Sbjct: 117 IRYDLFKSLIDQKTLLFYATENGVLPTAEQVDAE-TNRIVDEYVADEETKSAIIYQYGSV 175

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
           + F + +    +   +  N       ++E        +        Y        +  ++
Sbjct: 176 DAFSELVRDYVVTQMLATNVTQKAIPDMEERFENYVNENMEDLKINYEKVDANHILVSDE 235

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQN-L 249
                                    +   +F+      ++ G         +  +F++  
Sbjct: 236 ASAVEIKSMIDSGEI-------SFTDAATQFSIDTDTAINGGALGEFGRGQMVQEFEDAS 288

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKHEAEYVKKL 308
              +      P  +Q G   I +  K          +             +   +++   
Sbjct: 289 FDATPGLVIGPVESQFGYHLIRVNSKTTFDTFEEFASTSAYQTELGRFENEEFNKWIADY 348

Query: 309 RSN 311
           R  
Sbjct: 349 RQQ 351


>gi|317128176|ref|YP_004094458.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473124|gb|ADU29727.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 293

 Score = 69.3 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 58/233 (24%), Gaps = 15/233 (6%)

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
            A++++  E +    ++   I   +  +        +      E      D++       
Sbjct: 50  QALKDIYGEEVLTGLVQLRIIEQKAEELGITDEDVQQQIDDLKEGVGIDNDEEFYNFLAS 109

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
           +Q      +    + +  +        +      +       E     +L          
Sbjct: 110 QQVRGEDDLKERFLSHLVLEHLAGHVGDPTDEDLQELYEKGEEVEASHILVY-------- 161

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-S 253
               ++   D  E            + ++        G+  Y     +   F+       
Sbjct: 162 ---TEEEALDIYERIENGEDFATLAQDYSEDGSASQGGQLGYFGRGAMVAPFEVAAFNLD 218

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
            N  ++P  +Q G   I + D+       A    +      T   +   + + 
Sbjct: 219 VNEVSSPVESQFGYHIIKVTDR---LPFEAPFEEVRYMLEDTFNSQKVNKMMD 268


>gi|224438394|ref|ZP_03659321.1| hypothetical protein HcinC1_10416 [Helicobacter cinaedi CCUG 18818]
 gi|313144836|ref|ZP_07807029.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313129867|gb|EFR47484.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 276

 Score = 69.3 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 95/295 (32%), Gaps = 32/295 (10%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVE 83
           I  +   V      + + +   +NG  IT  +IS      KLQ      +K A+  LI E
Sbjct: 5   ICFLCLCVLVSQAEIIAGVAIRVNGHAITLSEIS------KLQTQMKISKKAAIDMLINE 58

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            LK  EIE+  I+ D   ++    Q A N  LS +   + + + G     ++  +  Q  
Sbjct: 59  RLKDDEIERFKISIDEFKIDEEISQIAANANLSKDALLAKVTRDGTTLQEYRNKIKKQLQ 118

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
             ++++            E        K+           +         N     +  K
Sbjct: 119 TKELMQRILASNISISS-EDELLSYYTKHKKEFLLPSSVRVVRYTAQNEGNLQNAIQSPK 177

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVT 263
              +   ++ +                      +  S L PQ   +   + NN   P +T
Sbjct: 178 TTIQGVQKINET---------------------ISLSSLSPQIAQVFLNTPNNEFTPVLT 216

Query: 264 QKG--VEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             G       + ++           K  ++ +    K +    E+  K+RS+A I
Sbjct: 217 TGGNSFVSFLVKERLGEKAISFDEAKPLINQKIMAQKEQSIITEHFNKIRSSANI 271


>gi|183219611|ref|YP_001837607.1| putative signal peptide [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189909750|ref|YP_001961305.1| hypothetical protein LBF_0181 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774426|gb|ABZ92727.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167778033|gb|ABZ96331.1| Conserved hypothetical protein; putative signal peptide [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 349

 Score = 69.3 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 41/334 (12%), Positives = 99/334 (29%), Gaps = 27/334 (8%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYK--SWAMSSRIRTTINGEVITDGDISKRIALL 63
                 F +     F  ++   + + +    S+   + +   +  + I+  D  + +   
Sbjct: 1   MQKRPRFQRYFVFIFAAVVSVSLTVPTNPLGSYESLNAVLAIVGPKSISTLDYEEGVERY 60

Query: 64  KLQ-------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV--QHARNTG 114
           K         +  G L    +  LI   +     ++  I  +   +         A+   
Sbjct: 61  KNLSRFFPNYRKKGSLHSQVIDFLIDRAVVDNVADEESIQVNEKRIEAEIQKRMEAQGIS 120

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
              +   S   +  +  + +   L  Q     +++          E E+ +   K K   
Sbjct: 121 DLEQFKKSVQSQFNLPYDVWLDDLPYQIKKGQLLQIKVSPPL-PSEQEVQSWYNKNKAKV 179

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV----- 229
             E+  R ++FS       +     +   +  E R +  +D +  +  AS   +      
Sbjct: 180 GNEFKFRELVFSP---ANGSIEEESRLFNELTEIRNKSLQDPSFFKLVASGPRNESRYRL 236

Query: 230 SIGKAQYLLESDLHPQFQNL-----LKKSQNNTTNPYVTQKG-VEYIAICDKRDLGGEIA 283
           + G   Y+   +L+               Q   +  +   +     + I   R    + A
Sbjct: 237 NGGLVNYVPTFELYKTQPTTASVLAQVGGQGKFSEVFRDDRKRYCLVYIEGMRPTPLD-A 295

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           ++  +       K +    E+V   R N  I  +
Sbjct: 296 VRKGIQGFLFREKEQTSFEEWVVATRKNTSITIF 329


>gi|329769980|ref|ZP_08261377.1| hypothetical protein HMPREF0433_01141 [Gemella sanguinis M325]
 gi|328837540|gb|EGF87167.1| hypothetical protein HMPREF0433_01141 [Gemella sanguinis M325]
          Length = 311

 Score = 69.3 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 39/315 (12%), Positives = 98/315 (31%), Gaps = 36/315 (11%)

Query: 13  IKLLTTYFV-LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
           +K      + + +   V  ++  S   +  I +      +T+ DI + I          +
Sbjct: 1   MKKFKKAILPVALSISVIGLAGCSSGGTKYISSKAGD--VTEKDIVESI-------GANQ 51

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           L K A   +I + L  +   K         +N      A+      + F   L ++G   
Sbjct: 52  LSKAATSMMIQKVLLDKYKNKINEKVIDEQLNK-----AQEQYGGKDKFEQILKQKGFTL 106

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
           + +K  L +++    ++     +    L+     NK +          I   + S  +  
Sbjct: 107 DQYKDGLKVKAAQTIMINEYAGITEDKLKESYEKNKHQYHLA-----HILISVKSSSNPN 161

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESD---LHPQFQ 247
             +    +K+ ++  +            +++++   +  + G   +  + D   +     
Sbjct: 162 GLSDEEAKKKAEEVLKKIKDGGDFATLAKEYSNDTGNASNGGDLGWSSKEDNSYVSEFNN 221

Query: 248 NLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEA----- 302
                +++  ++   T  G   I + D +D          L         E+        
Sbjct: 222 AAYALNKDQVSDVVKTPFGYHIIKVLDTKDSS-----YDELKTSLEEKAAEQAVKNDSTI 276

Query: 303 --EYVKKLRSNAIIH 315
             + +KKL     + 
Sbjct: 277 VSKALKKLFEEYNVK 291


>gi|164688876|ref|ZP_02212904.1| hypothetical protein CLOBAR_02524 [Clostridium bartlettii DSM
           16795]
 gi|164602080|gb|EDQ95545.1| hypothetical protein CLOBAR_02524 [Clostridium bartlettii DSM
           16795]
          Length = 351

 Score = 69.3 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 31/343 (9%), Positives = 85/343 (24%), Gaps = 52/343 (15%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVI--------------------- 51
           ++ +     L++  ++ I      + +S    T+NGE I                     
Sbjct: 1   MQGMKKIVALVLAMVLGISMIGCSSNNS--VATVNGEGIPLEYYKIYTNWTRLGYESSYG 58

Query: 52  -TDGDISKRIALLKLQKIN------------------GELEKIAVQELIVETLKKQEIEK 92
            T       +        +                     +   +Q +    +  Q+ ++
Sbjct: 59  FTSSTWETEMQDQTTSSNSDSSGTSDKSKSSEKTTYWDNFKSQVLQAMEQSEVIYQKAKE 118

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             +      +        ++   +                    +     +     +  F
Sbjct: 119 VKVEPTDKEIQEQVDDFNKSINSNETTKEQAKKAGITDKFLTYIFTRE--LANSAYQEYF 176

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
                  +  +    +  K           ++ +   +  +     +   K   E  L+ 
Sbjct: 177 NKHTKVDDATLKKEYESNKQAYNTVTASHILISTKDSDGKELSAKKKAEAKKKAEEVLQK 236

Query: 213 PKDCNKLEKFASKIH-----DVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKG 266
            K+     K A K         + G+        +  +F +   K ++ + ++   T  G
Sbjct: 237 AKNGEDFAKLAKKYSEDTSNAENGGELGAFTYPQMVEEFSKAAFKLNKGDISDIVETSYG 296

Query: 267 VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
              I + DK       A+K  +       K  +   +     +
Sbjct: 297 YHIIKVTDK--ADTFDAVKNSVKTAVLSNKYSEQVQKLFDDAK 337


>gi|290893167|ref|ZP_06556155.1| rotamase [Listeria monocytogenes FSL J2-071]
 gi|290557329|gb|EFD90855.1| rotamase [Listeria monocytogenes FSL J2-071]
          Length = 293

 Score = 68.9 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/304 (9%), Positives = 84/304 (27%), Gaps = 40/304 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +L +  ++ + S  +      +  T +   +T  ++   +          +    
Sbjct: 1   MKKKLILGLVMVMALFSLAACGGGGDVVKT-DSGDVTKDELYDAMK--------DKYGSE 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            VQ+L  E +   + + S    D            +        +              +
Sbjct: 52  FVQQLTFEKILGDKYKVSDEDVD------------KKFNEYKSQYGDQFSAVLAQSGLTE 99

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    Q  +  +V+          +  +    +                +          
Sbjct: 100 KSFKSQLKYNLLVQKATEANTDTSDKVLKKYYET---------------WQPDITVSHIL 144

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLK--K 252
              + + K+ E+      K  +  +++++      + G+        + P F+      K
Sbjct: 145 VADENKAKEVEQKLKDGAKFADLAKEYSTDTATKENGGQLAPFGPGKMDPAFEKAAYALK 204

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA-QNTPTKIEKHEAEYVKKLRSN 311
           ++ + + P  TQ G   I +            K  + A         ++  + +KK   +
Sbjct: 205 NKGDISAPVKTQYGYHIIQMDKPATKTTFEKDKKAVKASYLESQLTTENMQKTLKKEYKD 264

Query: 312 AIIH 315
           A + 
Sbjct: 265 ANVK 268


>gi|134302454|ref|YP_001122424.1| hypothetical protein FTW_1602 [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134050231|gb|ABO47302.1| hypothetical protein FTW_1602 [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 467

 Score = 68.9 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 108/271 (39%), Gaps = 13/271 (4%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN-----GELEKIAVQELIV 82
           V +       + ++    +N   IT  ++ + +A L+  + N       L++ A+Q+LI 
Sbjct: 40  VSMNVSDKKYLVNKTVAIVNSRPITSFELDQELAKLEAMQPNSAFNTDPLKRQALQDLIS 99

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           +++  Q  E++ I   +  ++      A   G+S E     ++  G+  + +K+ +  Q 
Sbjct: 100 QSVLLQLAERNNIMISNQQLDSAIQDIAAKNGVSVESLKLNVEAAGMSFDSYKKRIRDQL 159

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV------REYLIRTVLFSIPDNKLQNQG 196
           +   + +     +      EI    +K +          + Y ++ ++ ++PD+K   Q 
Sbjct: 160 MISQLQQQAIAQQVYVSPEEIQKYIKKHQKEFDREMSPVKLYTLKNLIVALPDSKKARQK 219

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKKSQ 254
            +    K A             +++F+   + VS G     ++ D  P    + + +   
Sbjct: 220 KIDLFKKLALAVNDGSIDFSEIVKQFSQAPNAVSGGIVSQQVKFDSIPDIYKEYIKELKN 279

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALK 285
           +  + P++    ++ I I +  +    ++ K
Sbjct: 280 HQVSQPFIVNHTLQMIYIDNIDEKAPILSKK 310



 Score = 49.7 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/271 (9%), Positives = 78/271 (28%), Gaps = 9/271 (3%)

Query: 53  DGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
             +  + ++ +KL  +   +  +   +   +       + +    D +      V+    
Sbjct: 188 QKEFDREMSPVKLYTLKNLIVALPDSKKARQKKIDLFKKLALAVNDGSIDFSEIVKQFSQ 247

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
              +          +        +    +      V   F++ +    + I    +K   
Sbjct: 248 APNAVSGGIVSQQVKFDSIPDIYKEYIKELKNHQ-VSQPFIVNHTLQMIYIDNIDEKAPI 306

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
           ++ +          I  +   N+   +  ++ A+ +     +      K+       + G
Sbjct: 307 LSKKVTKYYVYAIEIKLDGGMNEDGAKSSLERAKLAIESGQEFTKVALKYNQDYDHPN-G 365

Query: 233 KAQYLLESDLHP-----QFQNLLKKSQNNTTNPYVTQK-GVEYIAICDKRDLGGEIALKA 286
             +++ E D  P      F  L +  +N  + P+         I     ++      LK 
Sbjct: 366 NFRWVAELDSPPSLPPAAFAQLKQLKENELSEPFQADGRTWMIIKYTKTKEYDAAEQLKE 425

Query: 287 Y-LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                     K ++    ++  ++ +A I  
Sbjct: 426 QKALEAIFSEKAQEIYKTWLTSMKDDAYIEI 456


>gi|229846060|ref|ZP_04466172.1| lipoprotein signal peptidase [Haemophilus influenzae 7P49H1]
 gi|229811064|gb|EEP46781.1| lipoprotein signal peptidase [Haemophilus influenzae 7P49H1]
          Length = 622

 Score = 68.9 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 46/395 (11%), Positives = 111/395 (28%), Gaps = 84/395 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           +  K+    +  I       + + F +  +  Y  ++ +      +NGEVI+  D   R 
Sbjct: 2   LIEKMHNLTNSKISKFILGLITVSFLVGGMSGYL-FSSNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  AL---LKLQKINGE-------------LEKIAVQELIVETLKKQEIE------------- 91
                ++ Q+                 L +  V  +I + L +Q ++             
Sbjct: 61  NQEFEIRAQREGEAFMGQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 92  ----KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
                          N  + +  +   L+++ ++S L      +         + I P  
Sbjct: 121 AIVTDPNFQVKGKFDNSVYQRILQQNRLTSDGYASILRASLPLEQIQNGVANSEFIVPAQ 180

Query: 148 VK-------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
           VK                    D M K    + EI    +  +   V+   ++     + 
Sbjct: 181 VKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYIDLS 240

Query: 189 DNKLQNQGFV----------------------------QKRIKDAEESRLRLPKDCNKLE 220
            + +     V                            ++  K A E   +     +  +
Sbjct: 241 ADNISKNLQVTDVEIAQYYQDNKAQFMTQRLAHIQFANEQDAKVAYEELQKGANFADVAK 300

Query: 221 KFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL 278
             +  KI   + G   ++  ++L   F++          + P         + + +++  
Sbjct: 301 TKSLDKISGENGGDLGWVNANELPKAFEDAAAALQVGQYSQPINVDGNYHIVLVQERK-A 359

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                +KA ++     + +E       K+    A 
Sbjct: 360 QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAF 394


>gi|325282949|ref|YP_004255490.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
           proteolyticus MRP]
 gi|324314758|gb|ADY25873.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
           proteolyticus MRP]
          Length = 652

 Score = 68.9 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/327 (9%), Positives = 96/327 (29%), Gaps = 13/327 (3%)

Query: 1   MTSKV-FTSLSDFIKLLTTYFVLIIFC---IVPIVSYKSWAMSSRIRTTINGEVITDGDI 56
           M  K    +L   + LL    + + F        ++             +NG+ IT   +
Sbjct: 1   MNKKTALNALLTVLALLMVGGMALQFLPGDGAKTITNAVRGEQGTPAIRVNGKAITAEKL 60

Query: 57  S--KRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFD---SNTVNYFFVQHAR 111
              +             L+      +I + ++++ + ++    +    +          +
Sbjct: 61  QKIQDNNPSPFASQGKALQDDFRTFMISQVVRQELMVQAARDINVTREDVNAEVTKVREQ 120

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
           N       ++  L + G+ D+ +++ +          +          E E+        
Sbjct: 121 NNLTDDAAWTDALQRVGLSDSEYREQVKEGLAVQRKNEAIEAAVPAATEQEMKTYYDLNP 180

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
            +   E  +R     + D++ + +  + +    A+ + L         E   +       
Sbjct: 181 TLFQTEQRLRGRQ-IVVDDEKKARELLAQARGGADFAELAKKNSTENAENGGALGALGEG 239

Query: 232 GKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDK--RDLGGEIALKAYL 288
           G  Q +    L  +    ++       T+   +      + + +    +      +K  +
Sbjct: 240 GALQPVEPVVLPEEVAAAVQALPAPGLTDVVASGGRFYVVKVEELLPPETKPFETVKEEV 299

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             +   +K       ++ +  + A I 
Sbjct: 300 KTELEKSKKRAAVEAFMDEQLAGAKIE 326


>gi|219847928|ref|YP_002462361.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus
           aggregans DSM 9485]
 gi|219542187|gb|ACL23925.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus
           aggregans DSM 9485]
          Length = 302

 Score = 68.9 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/285 (10%), Positives = 61/285 (21%), Gaps = 67/285 (23%)

Query: 43  RTTINGEV-------I--------TDGDISKRIALLKLQKINGELEKIAVQELIVETLKK 87
              +N E+       I        T   I + +       +  +L +   +++I   L  
Sbjct: 43  VADVNNEIKRAIGDGIANALASGQTREQIEQIV-------VENDLRRQIFEQMIQNELLL 95

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
               + GI  D   ++        N    AE                            +
Sbjct: 96  YYARQHGIGVDPVALDAVVFNRISNDASPAE----------------VLDQRSVLAREQI 139

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           V                                R +L              +   +    
Sbjct: 140 VLEIIARNTRADMA-----------------HARHIL-----------VDDEASAQAILA 171

Query: 208 SRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKG 266
                          +       + G   +    D  P F+  +     NT     T  G
Sbjct: 172 DLQGGANFATLAATRSRDTASAANGGDLGWATRGDFVPAFEEAIFTLPLNTPQIVKTDFG 231

Query: 267 VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
              + + ++         +     QN     ++    + ++LR  
Sbjct: 232 FHVVEVLERELQRPFDTFEQLRVRQNAGQFYQETFVPWYEELRRQ 276


>gi|57339632|gb|AAW49803.1| hypothetical protein FTT0468 [synthetic construct]
          Length = 508

 Score = 68.9 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 108/271 (39%), Gaps = 13/271 (4%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN-----GELEKIAVQELIV 82
           V +       + ++    +N   IT  ++ + +A L+  + N       L++ A+Q+LI 
Sbjct: 72  VSMNVSDKKYLVNKTVAIVNSRPITSFELDQELAKLEAMQPNSAFNTDPLKRQALQDLIS 131

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           +++  Q  E++ I   +  ++      A   G+S E     ++  G+  + +K+ +  Q 
Sbjct: 132 QSVLLQLAERNNIMISNQQLDSAIQDIAAKNGVSVESLKLNVEAAGMSFDSYKKRIRDQL 191

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV------REYLIRTVLFSIPDNKLQNQG 196
           +   + +     +      EI    +K +          + Y ++ ++ ++PD+K   Q 
Sbjct: 192 MISQLQQQAIAQQVYVSPEEIQKYIKKHQKEFDREMSPVKLYTLKNLIVALPDSKKARQK 251

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKKSQ 254
            +    K A             +++F+   + VS G     ++ D  P    + + +   
Sbjct: 252 KIDLFKKLALAVNDGSIDFSEIVKQFSQAPNAVSGGIVSQQVKFDSIPDIYKEYIKELKN 311

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALK 285
           +  + P++    ++ I I +  +    ++ K
Sbjct: 312 HQVSQPFIVNHTLQMIYIYNIDEKAPILSKK 342



 Score = 50.4 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/271 (9%), Positives = 78/271 (28%), Gaps = 9/271 (3%)

Query: 53  DGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
             +  + ++ +KL  +   +  +   +   +       + +    D +      V+    
Sbjct: 220 QKEFDREMSPVKLYTLKNLIVALPDSKKARQKKIDLFKKLALAVNDGSIDFSEIVKQFSQ 279

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
              +          +        +    +      V   F++ +    + I    +K   
Sbjct: 280 APNAVSGGIVSQQVKFDSIPDIYKEYIKELKNHQ-VSQPFIVNHTLQMIYIYNIDEKAPI 338

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
           ++ +          I  +   N+   +  ++ A+ +     +      K+       + G
Sbjct: 339 LSKKVTKYYVYAIEIKLDGGMNEDGAKSSLERAKLAIESGQEFTKVALKYNQDYDHPN-G 397

Query: 233 KAQYLLESDLHP-----QFQNLLKKSQNNTTNPYVTQK-GVEYIAICDKRDLGGEIALKA 286
             +++ E D  P      F  L +  +N  + P+         I     ++      LK 
Sbjct: 398 NFKWVSELDSPPSLPPAAFAQLKQLKENELSEPFQADGRTWMIIKYTKTKEYDAAEQLKE 457

Query: 287 Y-LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                     K ++    ++  ++ +A I  
Sbjct: 458 QKALEAIFSEKAQEIYKTWLTSMKDDAYIEI 488


>gi|15604516|ref|NP_221034.1| hypothetical protein RP673 [Rickettsia prowazekii str. Madrid E]
 gi|6226388|sp|O05951|Y673_RICPR RecName: Full=Uncharacterized protein RP673; Flags: Precursor
 gi|2073481|emb|CAA72481.1| hypothetical protein [Rickettsia prowazekii]
 gi|3861210|emb|CAA15110.1| unknown [Rickettsia prowazekii]
 gi|292572304|gb|ADE30219.1| hypothetical protein rpr22_CDS651 [Rickettsia prowazekii Rp22]
          Length = 295

 Score = 68.9 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 92/303 (30%), Gaps = 23/303 (7%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGELE 73
           L++   V      + A  + I  ++N + IT  +   R  ++             + +L 
Sbjct: 4   LLLIITVFFTFNVAQASLTSIVASVNDKPITLNEFHARKKMIMALNNIENLTADQDKQLN 63

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
            +A+  LI E+L  Q           + ++           ++      +L  + +    
Sbjct: 64  DLAINSLIDESLLFQYAGDRE--IPQDEIDNAIKSIEDRNKMAHGSLLQYLKNKSVNPES 121

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
           F   +  + I  +++ +           EI           V   +         +    
Sbjct: 122 FILQIKSELIKMNILSS-LSRSVQVSNKEIDVAILSSDQKDVEILMQVFRSKDGSNKAFT 180

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS 253
               ++ R+K   + +  L      ++   SK+ ++               +   +    
Sbjct: 181 KMNHLKNRLKKCSDVKRTLYDKFATMQIITSKLSNIEG------------VKQTIVKDLI 228

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            +  +N +      E I +C K+ L        Y+    T  KI +   +  K +R  A 
Sbjct: 229 PDKASNVFEVNNKFEIILVCSKKILNVNADENNYVVNFLTNKKISQKAQKIFKNMRKKAA 288

Query: 314 IHY 316
           I  
Sbjct: 289 IRI 291


>gi|148826351|ref|YP_001291104.1| lipoprotein signal peptidase [Haemophilus influenzae PittEE]
 gi|148716511|gb|ABQ98721.1| lipoprotein signal peptidase [Haemophilus influenzae PittEE]
          Length = 622

 Score = 68.9 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 46/395 (11%), Positives = 111/395 (28%), Gaps = 84/395 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           +  K+    +  I       + + F +  +  Y  ++ +      +NGEVI+  D   R 
Sbjct: 2   LIEKMHNLTNSKISKFILGLITVSFLVGGMSGYL-FSSNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  AL---LKLQKINGE-------------LEKIAVQELIVETLKKQEIE------------- 91
                ++ Q+                 L +  V  +I + L +Q ++             
Sbjct: 61  NQEFEIRAQREGEAFMGQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 92  ----KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
                          N  + +  +   L+++ ++S L      +         + I P  
Sbjct: 121 AIVTDPNFQVKGKFDNSVYQRILQQNRLTSDGYASILRASLPLEQIQNGIANSEFIVPAQ 180

Query: 148 VK-------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
           VK                    D M K    + EI    +  +   V+   ++     + 
Sbjct: 181 VKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYIDLS 240

Query: 189 DNKLQNQGFV----------------------------QKRIKDAEESRLRLPKDCNKLE 220
            + +     V                            ++  K A E   +     +  +
Sbjct: 241 ADNISKNLQVTDVEIAQYYQDNKAQFMTQRLAHIQFANEQDAKVAYEELQKGANFADVAK 300

Query: 221 KFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL 278
             +  KI   + G   ++  ++L   F++          + P         + + +++  
Sbjct: 301 TKSLDKISGENGGDLGWVNANELPKAFEDAAAALQVGQYSQPINVDGNYHIVLVQERK-A 359

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                +KA ++     + +E       K+    A 
Sbjct: 360 QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAF 394


>gi|206560356|ref|YP_002231120.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia J2315]
 gi|198036397|emb|CAR52293.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia J2315]
          Length = 644

 Score = 68.9 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 24/273 (8%), Positives = 58/273 (21%), Gaps = 22/273 (8%)

Query: 53  DGDISKRIALLKLQ-KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
             D+ +   LL  Q     + ++     L ++ +    +  +                 R
Sbjct: 133 SIDVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVSSAFTPKSLAQRLSELAAQQR 192

Query: 112 NTGLSAEDFSSFLDKQGIGDNH---FKQYLAIQSIWPDVVKNDF--------MLKYGNLE 160
                    S F  K    D     +          P+     +               E
Sbjct: 193 EVQALVLKTSDFAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVYSPAAAAASAQPTE 252

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            +I             E  +R     I      +          AE+    +    ++  
Sbjct: 253 ADIKKFYDDNPTHFRTEAQVRVSHIFIAAPGSASAADKAAAKAKAEQLLADVKAHPDQFA 312

Query: 221 KFA-----SKIHDVSIGKAQYLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAI 272
           + A             G   ++                   Q + +    +  G   +  
Sbjct: 313 QIAQKSSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFSLKQGDVSGIVQSDLGFHILKA 372

Query: 273 CDKRDL--GGEIALKAYLSAQNTPTKIEKHEAE 303
            + +         +K  ++         K  ++
Sbjct: 373 TEVKPAVVKPFAEVKDQIAIDLKQQYASKAFSD 405



 Score = 45.1 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/211 (9%), Positives = 54/211 (25%), Gaps = 15/211 (7%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN-------------GELE 73
            V I  ++ +   S     +NG  IT  +          Q                 E  
Sbjct: 26  FVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAFRQQIDQARQALGGQFDIKMFDTPEHR 85

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV--QHARNTGLSAEDFSSFLDKQGIGD 131
           K  +  LI + +   E ++  +T   N V    +      +              Q +  
Sbjct: 86  KQVLDGLIQQRVLADETQRLHLTASDNAVRDALMSDPMIASLKKPDGSIDVERYAQLLSF 145

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                    + +   +          +      +  Q++  +  ++  ++ ++    D  
Sbjct: 146 QGMTPEQYQERVRYSLALQQIPASIVSSAFTPKSLAQRLSELAAQQREVQALVLKTSDFA 205

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            + Q    +     +  +           ++
Sbjct: 206 AKVQPTDAQLTAYYDAHKQSFATPETATIQY 236


>gi|164688004|ref|ZP_02212032.1| hypothetical protein CLOBAR_01649 [Clostridium bartlettii DSM
           16795]
 gi|164602417|gb|EDQ95882.1| hypothetical protein CLOBAR_01649 [Clostridium bartlettii DSM
           16795]
          Length = 302

 Score = 68.9 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 91/270 (33%), Gaps = 11/270 (4%)

Query: 55  DISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
           D        + +  + ++++  +  +I   +  Q+ +K  I    + VN  + Q  +   
Sbjct: 37  DADYLAQFKESKDNDDKIKQEVISYMIDNEVVYQQAQKEKIKVTDDEVNQKYSQIEKMLD 96

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
            + E      D     D   +      ++       +  LK  + E+E    + K     
Sbjct: 97  TNQEYKKLLDDAGVDEDYLKETIKKDLAVQKYRENYEQDLKVTDKEVEKYYKEHKDDFKE 156

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-----SKIHDV 229
                   ++ ++ DN        ++ +K   ES L+  K+    EK A      K    
Sbjct: 157 ESVEAYHILVSTLDDNNKPVDDSKKEELKSKAESLLKEIKNGGDFEKIAKENSDDKSSGK 216

Query: 230 SIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR-DLGGEIALKAY 287
             G   Y  +   + QF +   K  +   +N + T  G E + + +K+ +       +  
Sbjct: 217 KGGYLGYFTKDSKNAQFTKEAFKLEKGQVSNVFETPFGYEIVKVTNKKTEQKSLEDSREE 276

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           +  +    K      + V  LR  + +  +
Sbjct: 277 IVNRILADK----YLDQVNSLREKSDVQRF 302


>gi|167581584|ref|ZP_02374458.1| peptidyl-prolyl cis-trans isomerse D, putative [Burkholderia
           thailandensis TXDOH]
          Length = 644

 Score = 68.9 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/305 (6%), Positives = 63/305 (20%), Gaps = 29/305 (9%)

Query: 26  CIVPIVSYKSWAMSSRIRT---TINGEVITDGDISKRIALLKLQ-KINGELEKIAVQELI 81
                 + +   +S  +       +G      D  +   +L +Q     + ++     L 
Sbjct: 107 LTASDGAVRQTLLSDPVVASLKKADG----SFDAERYTQMLAMQGMTPDQYQERVRYNLA 162

Query: 82  VETLKKQEIEKSGITFDSNTV-----------NYFFVQHARNTGLSAEDFSSFLDKQGIG 130
           ++ +    +  +                        ++ A          +         
Sbjct: 163 LQQIPASIVSSAFTPKSVARRLTELAEQQREVQQMMLKSADYATKVQPTDAQISAYYDAH 222

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
              F    A    +    +          ++++             +  +R     I   
Sbjct: 223 KQAFATREAATIQYLVYSQAAAAAAAQPSDIDVKKYYDDNIARYRTDAQVRVSHIFIAAA 282

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-----SKIHDVSIGKAQYLLESDLHPQ 245
           K  +          AE+    +    ++  + A             G   ++        
Sbjct: 283 KDASAADKAAAKAKAEQLLAEVKAHPDQFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGG 342

Query: 246 FQNLLKK---SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEA 302
                      +   +       G   +   D +    +      +         ++  A
Sbjct: 343 AAFDDAAFALKKGEISGVVQGDFGFHILKATDLKPAVVKPLA--EVKDSIVADLKQQFAA 400

Query: 303 EYVKK 307
           +    
Sbjct: 401 KAFAD 405



 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/236 (8%), Positives = 67/236 (28%), Gaps = 18/236 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIF---CIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
           +     +  +L+  + +LI+     IV I  ++ +   S     +NG  IT  +    + 
Sbjct: 1   MLDFFRNHQRLMMFFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGMLR 60

Query: 62  LLKLQKIN-------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF-- 106
               Q                 +  +  +  LI +     E ++  +T     V      
Sbjct: 61  QQVDQARQMLGAQFDAKAFDTPQRRQQLLDGLIQQRALADETQRLHLTASDGAVRQTLLS 120

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
                +   +   F +    Q +           + +  ++          +      + 
Sbjct: 121 DPVVASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKSV 180

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            +++  +  ++  ++ ++    D   + Q    +     +  +           ++
Sbjct: 181 ARRLTELAEQQREVQQMMLKSADYATKVQPTDAQISAYYDAHKQAFATREAATIQY 236


>gi|152995753|ref|YP_001340588.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas sp.
           MWYL1]
 gi|150836677|gb|ABR70653.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas sp.
           MWYL1]
          Length = 607

 Score = 68.9 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/252 (13%), Positives = 80/252 (31%), Gaps = 16/252 (6%)

Query: 56  ISKRIALLKLQKINGEL---EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
             +RI    L +         +  +   +    K Q  E++      +         + N
Sbjct: 150 FKERIKQDVLIQQPRNAIAGSEFVLPYQVDSVSKLQSQERTYDYVSFS-----LADESEN 204

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
           T +S ++  ++ +         +Q      +      +DF  K    + E+    Q   +
Sbjct: 205 TSVSDDELKAYYEANKENFKTPEQVKVNYVVIS---SSDFYGKVKITDAELQDAYQASIS 261

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSI 231
           +  +E    + +     ++  +    +KR+++ E       K  +   K++  I  +   
Sbjct: 262 VLAQEERSASHILIETSDRSDD--EAKKRLEEVEAKLKAGAKFADLAAKYSDDIGSNKDG 319

Query: 232 GKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICD--KRDLGGEIALKAYLS 289
           G   Y+ +  +   F + L   +         Q G   I + D  K D+    + K  L 
Sbjct: 320 GNLGYVEKGIMGSAFDDTLFSMKKGEVKSVKGQYGYHLIKLDDISKPDVPSFASKKEELL 379

Query: 290 AQNTPTKIEKHE 301
            +    K     
Sbjct: 380 QKLREDKARDAL 391



 Score = 60.8 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/322 (12%), Positives = 93/322 (28%), Gaps = 23/322 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +   F+++ F +  + +  +   SS     ++G  IT   + +  
Sbjct: 1   MLQDIRDKSQGIVVKIIVGFIVVTFALFGVDALVTSFNSSDTVAEVDGVDITRTQMLQGA 60

Query: 61  ALLKLQ-------------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
              + Q               +  L++ A+ EL+   +   + +  G+      VN + +
Sbjct: 61  ETQRRQLISMMGGQVNPALLEDNLLQRRALDELVQRVVLANQAKGLGLGVSDAQVNAYLL 120

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
           Q  +       D + +L+           +   + I  DV+           E  +P   
Sbjct: 121 QAEQFQTNGQFDQNKYLNFIRSLGFTPLAF--KERIKQDVLIQQPRNAIAGSEFVLPYQV 178

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
             +  +  +E     V FS+ D          +     E ++            +     
Sbjct: 179 DSVSKLQSQERTYDYVSFSLADESENTSVSDDELKAYYEANKENFKTPEQVKVNYVVISS 238

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY 287
               GK   + +++L   +Q  +             +     +     R           
Sbjct: 239 SDFYGKV-KITDAELQDAYQASISVLAQ------EERSASHILIETSDRSDDEAKKRLEE 291

Query: 288 LSAQNTP-TKIEKHEAEYVKKL 308
           + A+     K     A+Y   +
Sbjct: 292 VEAKLKAGAKFADLAAKYSDDI 313


>gi|167619701|ref|ZP_02388332.1| peptidyl-prolyl cis-trans isomerse D, putative [Burkholderia
           thailandensis Bt4]
 gi|257138861|ref|ZP_05587123.1| peptidyl-prolyl cis-trans isomerse D, putative [Burkholderia
           thailandensis E264]
          Length = 644

 Score = 68.9 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/305 (6%), Positives = 63/305 (20%), Gaps = 29/305 (9%)

Query: 26  CIVPIVSYKSWAMSSRIRT---TINGEVITDGDISKRIALLKLQ-KINGELEKIAVQELI 81
                 + +   +S  +       +G      D  +   +L +Q     + ++     L 
Sbjct: 107 LTASDGAVRQTLLSDPVVASLKKADG----SFDAERYTQMLAMQGMTPDQYQERVRYNLA 162

Query: 82  VETLKKQEIEKSGITFDSNTV-----------NYFFVQHARNTGLSAEDFSSFLDKQGIG 130
           ++ +    +  +                        ++ A          +         
Sbjct: 163 LQQIPASIVSSAFTPKSVARRLTELAEQQREVQQMMLKSADYATKVQPTDAQISAYYDAH 222

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
              F    A    +    +          ++++             +  +R     I   
Sbjct: 223 KQAFATREAATIQYLVYSQAAAAAAAQPSDIDVKKYYDGNIARYRTDAQVRVSHIFIAAA 282

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-----SKIHDVSIGKAQYLLESDLHPQ 245
           K  +          AE+    +    ++  + A             G   ++        
Sbjct: 283 KDASAADKAAAKAKAEQLLAEVKAHPDQFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGG 342

Query: 246 FQNLLKK---SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEA 302
                      +   +       G   +   D +    +      +         ++  A
Sbjct: 343 AAFDDAAFALKKGEISGVVQGDFGFHILKATDLKPAVVKPLA--EVKDSIVADLKQQFAA 400

Query: 303 EYVKK 307
           +    
Sbjct: 401 KAFAD 405



 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/236 (9%), Positives = 67/236 (28%), Gaps = 18/236 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIF---CIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
           +     +  +L+  + +LI+     IV I  ++ +   S     +NG  IT  +    + 
Sbjct: 1   MLDFFRNHQRLMMFFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGMLR 60

Query: 62  LLKLQKIN-------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF-- 106
               Q                 E  +  +  LI +     E ++  +T     V      
Sbjct: 61  QQVDQARQMLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLTASDGAVRQTLLS 120

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
                +   +   F +    Q +           + +  ++          +      + 
Sbjct: 121 DPVVASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKSV 180

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            +++  +  ++  ++ ++    D   + Q    +     +  +           ++
Sbjct: 181 ARRLTELAEQQREVQQMMLKSADYATKVQPTDAQISAYYDAHKQAFATREAATIQY 236


>gi|171058611|ref|YP_001790960.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii
           SP-6]
 gi|170776056|gb|ACB34195.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii
           SP-6]
          Length = 637

 Score = 68.9 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/166 (10%), Positives = 45/166 (27%), Gaps = 8/166 (4%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                   E ++     +      +    R     +  +   +     K  + A      
Sbjct: 241 VTAGINVNEDDLRKYYDENAARYEQPQERRARHILVKLDADASDDAKAKAREKAAALLAE 300

Query: 212 LPKDCNKLEKFASKIH-----DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
           + K+       A +           G   ++    +   F++ +    +        T+ 
Sbjct: 301 VQKNRAAFADLARRQSDDPGSAAQGGDLDWIARGAMVKPFEDAVFGLKKGELGGIVETEF 360

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           G+  I + D R  GGE    A +  +      ++   +   +L   
Sbjct: 361 GLHVIEVTDTR--GGEKRAFANVRGELEAEVRKQLAQKRYAELAEQ 404



 Score = 47.0 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 57/161 (35%), Gaps = 18/161 (11%)

Query: 5   VFTSLSDFIKLLTTYFVLII---FCIVPIVSYKSWAMSSRIRTTINGEVITDGDIS---- 57
           +F  +    +LL     L+I   F +V I  Y  ++ S+     I+G  IT  +      
Sbjct: 1   MFDFVRRHNRLLQFGLALVIVPSFLVVGIQGYDQFSASNEAVANIDGRAITQTEWDAAHR 60

Query: 58  KRIALLKLQKI--------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--- 106
           +++  ++ Q          +  +++  + +L+ E +     +K  +      +   F   
Sbjct: 61  QQVERVRAQMPGVDAKLLDSPAIKQKVLDDLVRERVMLVAAQKLLLAPTDQRLQRLFATD 120

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
            Q A             L+ +G+    F Q L  +     V
Sbjct: 121 PQFASLRNADGSVRKDLLEARGMTSEQFAQQLRQEFALRQV 161


>gi|238783605|ref|ZP_04627626.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia bercovieri ATCC
           43970]
 gi|238715483|gb|EEQ07474.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia bercovieri ATCC
           43970]
          Length = 607

 Score = 68.9 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/377 (9%), Positives = 101/377 (26%), Gaps = 87/377 (23%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING------------ 70
           + F +  + SY     +      +NG+ I+   + + +   + +                
Sbjct: 2   LSFILTGVGSYLIGGSNDF-AAKVNGQEISRAQLEQAVQSERGRLQQQLGEQFSALAANE 60

Query: 71  ----ELEKIAVQELI-----------------VETLKKQEIEKSGITFDSNTVNYFFVQH 109
               +L +  + +L+                  E +K    +      D+   N  +++ 
Sbjct: 61  GYMQQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKDAIRQAPYFQTDNKFDNNKYLEL 120

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQY---------LAIQSIWPDVVKNDF-------- 152
               G + + F+    +Q I     + +          A       + + +         
Sbjct: 121 VNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPIEAQAMSELILQQREVRLATIDLK 180

Query: 153 --MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
               +    + E+ A   + KN  +    ++    ++    +Q++  V +    A   + 
Sbjct: 181 ALQAQQKVTDEELKAYYDQNKNSFIAPEQMKISFIAMDAAAMQDKITVTEEDIAAYYDQH 240

Query: 211 R-------------------------------LPKDCNKLEKFASKI-HDVSIGKAQYLL 238
           +                                       ++ ++ I    + G   +L 
Sbjct: 241 KSSYTQPERRNYSVIQFKNEAEAKAALEELKKGADFAAMAKEKSTDIISRKNGGDLGWLE 300

Query: 239 ESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTK 296
                 + +      +   ++   +  G   + + D +    +    +   L+ Q    K
Sbjct: 301 PETTADELKQAKLSEKGQLSDVVKSSVGYLIVRLNDIKPEQVKPLSEVHDALAKQVKQEK 360

Query: 297 IEKHEAEYVKKLRSNAI 313
                    +K+   A 
Sbjct: 361 AVDAYYALQQKVSEAAT 377


>gi|163784187|ref|ZP_02179121.1| hypothetical protein HG1285_05540 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880547|gb|EDP74117.1| hypothetical protein HG1285_05540 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 288

 Score = 68.9 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/291 (16%), Positives = 91/291 (31%), Gaps = 31/291 (10%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
           + S +   +  +I   +N   +   ++        +       +K     LI   L  QE
Sbjct: 18  VYSKEKEVLLDKIVIIVNDRPVLKSEVELAKKWFNISSDKEAAQK-----LIDHILLYQE 72

Query: 90  IEKSGITFDSNTVNYFFVQHARNTG-LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
             K GI      +     + ++     S E+F   L KQGI  N F   +  +      V
Sbjct: 73  ARKKGIKVMPQEIKAAIERISKANKVSSIEEFKKLLQKQGIAYNEFYDLIKREIAINKYV 132

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
           +     K      E      +                      L  +    K   +  ++
Sbjct: 133 QFVIKPKILENSKEAVEETYRKVR----------------IIYLDKKDPDFKNKYEIIKN 176

Query: 209 RLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGV 267
            L         +K++         G    + + ++     N +  S+        T KG+
Sbjct: 177 NLTKNTFEELAKKYSDDSITAKEGGLLGKIKKGEVVDYLDNAVWSSKVGEIKKVKTDKGI 236

Query: 268 EYIAI--CDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            +I I   +K+ +  +I  K  +       K+ +     +KKLR  A+I Y
Sbjct: 237 YFIYIESEEKKFVPKDINTKDII------NKLNEEMKLLIKKLREKAVIEY 281


>gi|206889870|ref|YP_002249039.1| foldase protein PrsA 1, putative [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206741808|gb|ACI20865.1| foldase protein PrsA 1, putative [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 292

 Score = 68.9 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/307 (10%), Positives = 85/307 (27%), Gaps = 43/307 (14%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K L  + +  IF +    S         +        +T  ++ + I  L  Q      
Sbjct: 1   MKYLKIFVIFTIFSLFFACSKS-----DEVVVKAGSSKLTKKELQEDIKSLPPQTKAFLA 55

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               V  L  E +K++ + +     +                                  
Sbjct: 56  SPEGVNRLKDELIKREVLYEEAKKKNLAKSEE--------------------------FK 89

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
              +     ++   +++ +        E +     +K K++ ++   +R     + +   
Sbjct: 90  RRMEEFKKITLINMLLEQEIKTLQQVTEQDAKEYYEKNKDMFIKPVEVRLSQIVVKNEDE 149

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK 251
                         E   +  +     ++ +       S G   +  +  L+PQ +N+  
Sbjct: 150 AK---------KVYERIDKGEEFSKIAKELSRDEKTKASGGDIGFFKKGQLNPQIENVAF 200

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKR-DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
              +   + P   +  +    I D + +      +K  L  Q    K +     Y+  L+
Sbjct: 201 SLRKGQVSMPLTFKGELYIFKITDVKGNPIDFEQIKGQLIEQLKAKKQQDWFNTYIDDLK 260

Query: 310 SNAIIHY 316
               +  
Sbjct: 261 KKHKVEI 267


>gi|208778951|ref|ZP_03246297.1| peptidyl-prolyl cis-trans isomerase [Francisella novicida FTG]
 gi|208744751|gb|EDZ91049.1| peptidyl-prolyl cis-trans isomerase [Francisella novicida FTG]
          Length = 457

 Score = 68.9 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 109/273 (39%), Gaps = 15/273 (5%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-------ELEKIAVQEL 80
           V +       + ++    +N   IT  ++ + +A L+  + N        +L++ A+Q+L
Sbjct: 28  VSMNVSDKKYLVNKTVAIVNSRPITSFELDQELAKLEAMQPNSAFNTDPLKLKRQALQDL 87

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I +++  Q  E++ I   +  ++      A   G+S E     ++  G+  + +K+ +  
Sbjct: 88  ISQSVLLQLAERNNIMISNQQLDSAIQDIAAKNGVSVESLKLNVEAAGMSFDSYKKRIRD 147

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV------REYLIRTVLFSIPDNKLQN 194
           Q +   + +     +      EI    +K +          + Y ++ ++ ++PD+K   
Sbjct: 148 QLMISQLQQQAIAQQVYVSPEEIQKYIKKHQKEFDREMSPVKLYTLKNLIVALPDSKKAR 207

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ-YLLESDLHPQFQNLLKK- 252
           Q  +    K A             +++F+   + VS G     +    +   ++  +K+ 
Sbjct: 208 QKKIDLFKKLALAVNDGSIDFSEIVKQFSQAPNAVSGGIVSQQVKFDSIPDIYKEYIKEL 267

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK 285
             +  + P++    ++ I I +  +    ++ K
Sbjct: 268 KNHQVSQPFIVNHTLQMIYIDNIDEKAPILSKK 300



 Score = 50.8 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/271 (9%), Positives = 78/271 (28%), Gaps = 9/271 (3%)

Query: 53  DGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
             +  + ++ +KL  +   +  +   +   +       + +    D +      V+    
Sbjct: 178 QKEFDREMSPVKLYTLKNLIVALPDSKKARQKKIDLFKKLALAVNDGSIDFSEIVKQFSQ 237

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
              +          +        +    +      V   F++ +    + I    +K   
Sbjct: 238 APNAVSGGIVSQQVKFDSIPDIYKEYIKELKNHQ-VSQPFIVNHTLQMIYIDNIDEKAPI 296

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
           ++ +          I  +   N+   +  ++ A+ +     +      K+       + G
Sbjct: 297 LSKKVTKYYVYAIEIKLDGGMNEDGAKSSLERAKLAIESGQEFTKVALKYNQDYDHPN-G 355

Query: 233 KAQYLLESDLHP-----QFQNLLKKSQNNTTNPYVTQK-GVEYIAICDKRDLGGEIALKA 286
             +++ E D  P      F  L +  +N  + P+         I     ++      LK 
Sbjct: 356 NFRWVSELDSPPSLPPAAFAQLKQLKENELSEPFQADGRTWMIIKYTKTKEYDAAEQLKE 415

Query: 287 Y-LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                     K ++    ++  ++ +A I  
Sbjct: 416 QKALEAIFSEKAQEIYKTWLTSMKDDAYIEI 446


>gi|90407416|ref|ZP_01215600.1| putative peptidyl-prolyl cis-trans isomerase D [Psychromonas sp.
           CNPT3]
 gi|90311447|gb|EAS39548.1| putative peptidyl-prolyl cis-trans isomerase D [Psychromonas sp.
           CNPT3]
          Length = 635

 Score = 68.9 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/260 (7%), Positives = 60/260 (23%), Gaps = 11/260 (4%)

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
           A          + +  +  L+           +     +       +  +          
Sbjct: 150 AKFSQSIKQDLVRRQLLNTLVSSEFILPIEIDNVDKLQAQQRVARILNISGRAFPQTTPI 209

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVV--KNDFMLKYGNLEMEIPANKQKMKNITVREY 178
           S    +     +        Q     V+   +    K    +++  A     +    R  
Sbjct: 210 SIKDIQAYYDQHEQNFQSLQQVSVDYVLLDAHKLSQKTVISDVQAQAYYDDHQVDYQRVE 269

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYL 237
             +     +  +         K+ +    +  +           +   +   + G   + 
Sbjct: 270 RRKVAHILVQGHS----ADALKKAQTILLALEKGADFSVLARAKSEDILSAKNDGALDWF 325

Query: 238 LESDLHPQFQNLLKKSQNN--TTNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNT 293
               +  QF             ++   +  G   I + D   +       +KA +     
Sbjct: 326 EHGVMDEQFDKASFALTAKAPLSDIVKSTFGYHIIKLLDIQQKQTLPFAQVKATVMKTLK 385

Query: 294 PTKIEKHEAEYVKKLRSNAI 313
               ++   +  ++LR  A 
Sbjct: 386 KENADERYYDLQQQLREVAF 405



 Score = 59.3 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 68/238 (28%), Gaps = 19/238 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+          +    +++ F +  +  Y     +S +  T+NG+ I++  + +  
Sbjct: 1   MLDKMREGSQGIAAKIILIVIILSFALAGVSGYLGGGNAS-VAITVNGDEISNASVEQEY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                    ++   A Q LI   L  Q I    +      V  
Sbjct: 60  KNERSRLQQQYGEQFDIIAASPGFVKQVRAQAKQTLISNLLIAQSIADMDLRIGDEQVKD 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
              +          +   +L           ++   QSI  D+V+   +    + E  +P
Sbjct: 120 AIRKMPEFQVKGEFNNEQYLSTLRRASYTPAKFS--QSIKQDLVRRQLLNTLVSSEFILP 177

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                +  +  ++ + R +  S           ++      ++              +
Sbjct: 178 IEIDNVDKLQAQQRVARILNISGRAFPQTTPISIKDIQAYYDQHEQNFQSLQQVSVDY 235


>gi|313622749|gb|EFR93091.1| foldase protein PrsA [Listeria innocua FSL J1-023]
          Length = 291

 Score = 68.9 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/304 (9%), Positives = 83/304 (27%), Gaps = 40/304 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +L +  ++ + S  +      +  T +   +T  ++   +          +    
Sbjct: 1   MKKKLILGLVMMMALFSLAACGGGGNVVKT-DSGDVTQDELYDAMK--------DKYGSE 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            VQ+L  E +   + + S    D            +        +              +
Sbjct: 52  FVQQLTFEKILGDKYKVSDEDVD------------KKFKEYKSQYGDQFSAVLAQSGLTE 99

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    Q  +  +V+          +  +    +                +          
Sbjct: 100 KSFKSQLKYNLLVQKATEANADTSDKALKEYYKT---------------WQPDITVSHIL 144

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLK--K 252
              + + K+ E+      K  +  +++++      + G+        + P F+      K
Sbjct: 145 VADENKAKEVEQKLKDGAKFADLAKEYSTDTATKENGGQLAPFGSGKMDPAFEKAAYALK 204

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA-QNTPTKIEKHEAEYVKKLRSN 311
           ++ + + P  TQ G   I +            K  +           ++  + +KK   +
Sbjct: 205 NKGDISAPVKTQYGYHIIQMDKPATKTTFDKDKKAVKESYLASQLTTENMQKTLKKEYKD 264

Query: 312 AIIH 315
           A + 
Sbjct: 265 ANVK 268


>gi|218262307|ref|ZP_03476821.1| hypothetical protein PRABACTJOHN_02495 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223458|gb|EEC96108.1| hypothetical protein PRABACTJOHN_02495 [Parabacteroides johnsonii
           DSM 18315]
          Length = 261

 Score = 68.9 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/251 (8%), Positives = 74/251 (29%), Gaps = 10/251 (3%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL--QKINGEL 72
           ++     + I   +  V Y    +   I   +  + I   DI  +   L+   Q+ +G+ 
Sbjct: 1   MMKKILTVFILACLSCVVYAQDNVIDEIVWVVGDDAILRSDIESQRLYLQNEGQRFDGDP 60

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
             +  +++ ++ L   + +   +    + V     +                +  G   +
Sbjct: 61  YCVLPEQMAIQKLFLNQAKIDSVEVSESQVIQETDRWINFAINQMGSKEKLEEYFGKKIS 120

Query: 133 HFKQYLAIQSIWPDVVKN---DFMLKYGNLEMEIPANKQKMKNIT----VREYLIRTVLF 185
             K       +    V+      + +      E+     ++   +         ++ +  
Sbjct: 121 QLKDERKEMIMEQQTVEQMKRQLIGEIKLTPSEVRKYYSQLSKDSLPNIPTTVEVQIITM 180

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHP 244
                  +      +  +  ++      +       ++         G+  +L ++ L P
Sbjct: 181 EPKIPFEETDAIKARLRQFTDDINSGKYEFSTLARLYSEDPESAKRGGELGFLGKTSLLP 240

Query: 245 QFQNLLKKSQN 255
           +F N+    ++
Sbjct: 241 EFANVAFNLKD 251


>gi|27368132|gb|AAN87191.1| LipA [Bacillus cereus]
          Length = 248

 Score = 68.9 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 80/281 (28%), Gaps = 46/281 (16%)

Query: 24  IFCIVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKINGELEKIAVQE-LI 81
                 +++  +   S  + T  +    +T+ ++SK    L+ Q     L ++ + + L+
Sbjct: 3   TIISCVMLALSACGSSDNVVTSKVGN--VTEKELSKE---LRQQYGESTLYQMMLSKALL 57

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
            +     E  K  +    + +   F       GL  ED               K+ +  +
Sbjct: 58  DKYKVSDEEAKKKVEEAKDKMGENFKSTLEQLGLKNED-------------ELKEKMKPE 104

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
             +   +K     K      +       +                            +K 
Sbjct: 105 IAFEKAIKATVTEKDVKNNYKPEMKVSHILVKD------------------------EKT 140

Query: 202 IKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN 259
            K+ +E            ++++         G+           +F+    K      ++
Sbjct: 141 AKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQVSD 200

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH 300
           P  T  G   I + DK++L     +K  +       +++  
Sbjct: 201 PVKTTYGYHIIKVTDKKELKPFDEVKEKIRKDLEQQRLQDR 241


>gi|229589919|ref|YP_002872038.1| putative peptidylprolyl isomerase [Pseudomonas fluorescens SBW25]
 gi|229361785|emb|CAY48667.1| putative peptidylprolyl isomerase [Pseudomonas fluorescens SBW25]
          Length = 313

 Score = 68.9 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/284 (8%), Positives = 75/284 (26%), Gaps = 29/284 (10%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI-AVQELIVETLKKQEIEKS 93
           + A S      +  + I   ++   +A L  +          A++  I   L ++ + + 
Sbjct: 41  NPAASGPAVARLGNQQIDLPELKTVLASLPAESREQLRGNRGALETWIRSRLAQKAVLEQ 100

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
                                           +Q       +       +    V  D+ 
Sbjct: 101 ADAQGWRQRPEV--------------------EQQTRAATEQIVFRDYMLSVSQVPADYP 140

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                 +       Q +           + +F   ++        ++  + +  ++    
Sbjct: 141 SAAELQQAYDSGKAQWVT----PPLYRVSQIFLAANDPQTLDTVRRQAQELSRRAQAAPG 196

Query: 214 KDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                  +F+         G +       L P+ ++ + +      ++   +  G   + 
Sbjct: 197 DFAALATQFSQDTDSAARGGDSGMQPLQQLVPEVRSAVSRLKVGAVSDVVQSAAGFHVLK 256

Query: 272 ICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           +  ++         L+  L+      + E+    Y++ + + A 
Sbjct: 257 LTGQQPARTATLDELRERLTQALRAQRQEQIAKAYLEGMLNTAT 300


>gi|121606645|ref|YP_983974.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas
           naphthalenivorans CJ2]
 gi|120595614|gb|ABM39053.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas
           naphthalenivorans CJ2]
          Length = 282

 Score = 68.9 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/188 (10%), Positives = 52/188 (27%), Gaps = 15/188 (7%)

Query: 143 IWPDVVKNDFMLKYG---NLEMEIPANKQKMKNIT--VREYLIRTVLF--SIPDNKLQNQ 195
               V++     +       E E     +   +     +   +R +LF  +   N     
Sbjct: 82  AERQVIEAMVDGEVSSPQPNEDECQRYYEANPSQFMVGQALHVRHILFAVTPGVNVHALT 141

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS-- 253
              +K + +         +      + ++       G   ++   D  P+  N L     
Sbjct: 142 IHAEKALLELTRKDASPERFVQLAAELSNCPTSAQGGDLGWVGPDDCAPELANELFHQKH 201

Query: 254 ----QNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
                        T+ G   I + ++R         ++  ++         +   +Y+  
Sbjct: 202 SQWGMGVHPRLIHTRFGFHIIEVLNRRAGKTPAYAEVRERIATLLAVQSRARALHQYMSL 261

Query: 308 LRSNAIIH 315
           L   A++ 
Sbjct: 262 LIGEALVE 269


>gi|313143878|ref|ZP_07806071.1| cell binding factor 2 [Helicobacter cinaedi CCUG 18818]
 gi|313128909|gb|EFR46526.1| cell binding factor 2 [Helicobacter cinaedi CCUG 18818]
          Length = 296

 Score = 68.9 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/321 (11%), Positives = 91/321 (28%), Gaps = 32/321 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEV-ITDGDISKR 59
           M + +   L+     +  +           +S    ++ ++   TI+G+  +TD D+   
Sbjct: 1   MIATILQILNFGEITMKKHLPAKQLFGAIFLSLAIASLQAKTYATIDGKPAVTDKDLE-I 59

Query: 60  IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
           +          +L     + +I E + +Q I K+      +T   +              
Sbjct: 60  LKQSIPNFNYAKLSDQEKEGIIQELVNRQLILKAAKAEKLDTSKEY-------------- 105

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
                             +  Q +     K            +    +    N  +    
Sbjct: 106 ------------TEAINNIKDQLLIDLWSKKQVGGIQMPSVNDAQIKEIYKNNEGMFINQ 153

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
                  +   + + +  +++  K  +++  +  +  N      +     + G       
Sbjct: 154 EMHARHILVKTESEAKDIIKELDKAGKKAESKFIELANAKSTDPASKQAKNGGDLGTFQR 213

Query: 240 SDLHPQFQNLLKKSQNNTT--NPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPT 295
           + +HP F N     +  T    P  T  G   I +  K +         K  +  Q    
Sbjct: 214 NVMHPDFANAASNLKPGTYTQEPVQTPFGYHVIYLIKKSEPKIIPYNEAKKIIEEQIKMQ 273

Query: 296 KIEKHEAEYVKKLRSNAIIHY 316
            ++    + ++ LR  A I  
Sbjct: 274 NVQGGMMQKIQALREKAKIQI 294


>gi|110679691|ref|YP_682698.1| peptidyl-prolyl cis-trans isomerase, putative [Roseobacter
           denitrificans OCh 114]
 gi|109455807|gb|ABG32012.1| peptidyl-prolyl cis-trans isomerase, putative [Roseobacter
           denitrificans OCh 114]
          Length = 276

 Score = 68.9 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 64/239 (26%), Gaps = 7/239 (2%)

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I    +  +  K                  R   L          +         +    
Sbjct: 20  IAAETQNHDGPKGKPGIAWRKAANAMAV--RTLLLQEARKRGVQAQVQEIAPSRFETEEE 77

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV-Q 199
             +   + +   +       +     K  ++  T   + +  +L +      + +     
Sbjct: 78  ALVRGLLDEAVVVSAPSAASVRAEWEKDPLRFRTPPLWEVSHILVACDPRDEEARRQAHA 137

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTT 258
           + +    ++            + +      + G        D  P+F+    + ++   T
Sbjct: 138 RAVDLTGQALGNPNGFAKLAARESDCGSKSTGGALGQQSPGDTVPEFEAALRQLTEGGIT 197

Query: 259 N-PYVTQKGVEYIAIC--DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             P +T+ G   I +       +    A+K  +S         +   ++V+ L ++A I
Sbjct: 198 GEPILTRYGWHIIKLDAVAIGAVLPFDAVKQKISDAMEKASWARAAKDFVQTLVASAEI 256


>gi|16801386|ref|NP_471654.1| hypothetical protein lin2322 [Listeria innocua Clip11262]
 gi|46396988|sp|Q929F4|PRSA2_LISIN RecName: Full=Foldase protein prsA 2; Flags: Precursor
 gi|16414834|emb|CAC97550.1| lin2322 [Listeria innocua Clip11262]
          Length = 291

 Score = 68.5 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/304 (9%), Positives = 83/304 (27%), Gaps = 40/304 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +L +  ++ + S  +      +  T +   +T  ++   +          +    
Sbjct: 1   MKKKLILGLVMMMALFSLAACGGGGNVVKT-DSGDVTQDELYDAMK--------DKYGSE 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            VQ+L  E +   + + S    D            +        +              +
Sbjct: 52  FVQQLTFEKILGDKYKVSDEDVD------------KKFKEYKSQYGDQFSAVLAQSGLTE 99

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    Q  +  +V+          +  +    +                +          
Sbjct: 100 KSFKSQLKYNLLVQKATEANADTSDKALKEYYKT---------------WQPDITVSHIL 144

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLK--K 252
              + + K+ E+      K  +  +++++      + G+        + P F+      K
Sbjct: 145 VADENKAKEVEQKLKDGAKFADLAKEYSTDTATKENGGQLAPFGSGKMDPAFEKAAYALK 204

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA-QNTPTKIEKHEAEYVKKLRSN 311
           ++ + + P  TQ G   I +            K  +           ++  + +KK   +
Sbjct: 205 NKGDISAPVKTQYGYHIIQMDKPATKTTFDKDKKAVKEAYLASQLTTENMQKTLKKEYKD 264

Query: 312 AIIH 315
           A + 
Sbjct: 265 ANVK 268


>gi|237751766|ref|ZP_04582246.1| peptidyl-prolyl cis-trans isomerase [Helicobacter bilis ATCC 43879]
 gi|229373132|gb|EEO23523.1| peptidyl-prolyl cis-trans isomerase [Helicobacter bilis ATCC 43879]
          Length = 280

 Score = 68.5 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/312 (13%), Positives = 92/312 (29%), Gaps = 44/312 (14%)

Query: 15  LLTTYFV--LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDG---DISKRIALLKLQKIN 69
           ++ ++ +  +     +  +     A+++++   ++G  I+D     + ++        + 
Sbjct: 1   MMKSFVLKRVAQVAAISSLCLMPMALNAKVLVNVDGIEISDSIFSALKQQNPSFNYDALP 60

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
              +K  + E+I   +     +K G+                                  
Sbjct: 61  EAQKKQLLDEIIDGVVTANAAKKEGLDKSEEYRMANL----------------------- 97

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                      Q +    +K         + + +   K+               +  I  
Sbjct: 98  -----------QMLSGLWLKKQVDSLSKTINVSVADAKKFYDANPKAFVTQNAEVRHILV 146

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG--KAQYLLESDLHPQFQ 247
            K Q+   +   I    +++     +    +         + G  K      +      Q
Sbjct: 147 QKEQDAKNIIAEINKVPKAKTESKFEELAKKLSIDPGSKDNGGLMKLPINSPAIAPEFAQ 206

Query: 248 NLLKKSQNNTTN-PYVTQKGVEYIAI--CDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            +LK S    T  P  T+ G   I +   DK       ++K  L       K+E+   E 
Sbjct: 207 EVLKMSAGTYTKNPVKTRYGYHIIYLKKLDKPATQTFDSVKGQLVELLKQQKMEEVLKEK 266

Query: 305 VKKLRSNAIIHY 316
           VKK+R +A I Y
Sbjct: 267 VKKMRDSAKITY 278


>gi|327479445|gb|AEA82755.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Pseudomonas
           stutzeri DSM 4166]
          Length = 318

 Score = 68.5 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/240 (8%), Positives = 68/240 (28%), Gaps = 5/240 (2%)

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           +       +     + +         V  A    +  E     + + G+           
Sbjct: 66  VNGVAIAPQAIAQELQYHPAESRDEAVFLATQALVVRELLQQRIAELGLVVQAAPGESEE 125

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV-REYLIRTVLFSIPDNKLQNQGFVQ 199
           ++    +++ +  L   +            +          R +L + P +  + +   +
Sbjct: 126 EAATRTLIEQEVPLPLADEAACQQYYNGNRQRFFSAPLLAARHILLACPADDAEARSLAR 185

Query: 200 KRIKDAEESRLRLPK-DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNT 257
           ++     +     P+       + ++       G    + +    P+F+  L +      
Sbjct: 186 EQALGLLQQLQAAPQRFAELALQHSACPSKEQGGALGQISKGQTVPEFERQLFRLPVGLC 245

Query: 258 TNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             P  ++ G   + +  + +        +   + A+      +   ++Y++ L   A I 
Sbjct: 246 QQPLESRYGYHLVFVDQRIEGEQLPYEIVAGTIRAELNQRVWQIGVSQYLQNLVGAANIE 305


>gi|213026808|ref|ZP_03341255.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 257

 Score = 68.5 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/161 (11%), Positives = 49/161 (30%), Gaps = 12/161 (7%)

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
           +    + +I A   +  +   +   IR  +                      ++  +   
Sbjct: 28  QAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAV---------LDALNKGED 78

Query: 215 DCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAIC 273
                ++ ++ I    + G   +L ES   P+ +N   K +   +    +  G     + 
Sbjct: 79  FATLAKEKSTDIISARNGGDMGWLEESATVPELKNAGLKEKGQISGVIKSSVGFLVARLD 138

Query: 274 DKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
           D +    +    ++  ++A+    K         +K+   A
Sbjct: 139 DIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDAA 179


>gi|160890576|ref|ZP_02071579.1| hypothetical protein BACUNI_03019 [Bacteroides uniformis ATCC 8492]
 gi|317479882|ref|ZP_07938999.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 4_1_36]
 gi|156859575|gb|EDO53006.1| hypothetical protein BACUNI_03019 [Bacteroides uniformis ATCC 8492]
 gi|316903956|gb|EFV25793.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 4_1_36]
          Length = 520

 Score = 68.5 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/301 (8%), Positives = 87/301 (28%), Gaps = 42/301 (13%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           ++    +  +F  +        A    +   ING+ +   +  +           G   +
Sbjct: 1   MVLMVRLFWVFFFLGFG-LAVSAQDDPVLMRINGKEVLRSEFERSYNKGGTSVGAG---R 56

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
            A+   + + +                                +        +  G +  
Sbjct: 57  KALDAYVNKFI--------------------------------DFRLKIEAAEVAGLDTS 84

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK--QKMKNITVREYLIRTVLFSIPDNKL 192
           + +   Q  +   +   ++      E E        K      R Y+     +   +   
Sbjct: 85  RVFQKEQDEYRRCLIKSYLTDEETAEQEARQYYDKMKSGRRAGRVYVKHIFKYLPQNISG 144

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
                ++ R+     +  +        +    +  D       ++    +  +F++++  
Sbjct: 145 HTLREMESRMDSIYRALAKEGGAVPSFDACVEQFSDEKKAF--WVGWLQMPVEFEDIVFG 202

Query: 253 -SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKHEAEYVKKLRS 310
            +    + P++T +G+  + + +++++     +K   +  Q     ++K    +V KL+ 
Sbjct: 203 LNAGEISRPFLTPQGIHIVKVLEQQEILPFERMKDKIIRCQTRRHGMDKGTRAFVDKLKK 262

Query: 311 N 311
            
Sbjct: 263 E 263


>gi|322379924|ref|ZP_08054201.1| peptidyl-prolyl cis-trans isomerase [Helicobacter suis HS5]
 gi|321147622|gb|EFX42245.1| peptidyl-prolyl cis-trans isomerase [Helicobacter suis HS5]
          Length = 318

 Score = 68.5 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 78/273 (28%), Gaps = 36/273 (13%)

Query: 51  ITDGDIS---KRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
           IT+ D     +R       K+  E +K  +++ I   L ++E +K  +   +        
Sbjct: 72  ITENDFDVIKQRNPNFDFNKLKPEQKKALLEQAINNLLIEREAKKEKLDDTAEFAKRMAG 131

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
              +                               IW          +    +      +
Sbjct: 132 YKKQLLVE---------------------------IWAKHQAEAIGKEDIPEDQLRKYYQ 164

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
                   +E   R +L     +  +    + K  K   E         N+     +  +
Sbjct: 165 DNKTQFVQQEAKARHILVKTEADAKRVISELNKTPKTRIEK--EFIDIANRESIDPNTKN 222

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAICDKRD--LGGEIA 283
             + G      ++ + P+F N +      + T  P  T+ G   I +  K +        
Sbjct: 223 SKNGGDLGKFQKNQMAPEFSNAVFALKPGSYTKTPVKTEFGYHVIYLMSKNEPKTPTFEQ 282

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            +  +       + +++    ++KLR N  I+ 
Sbjct: 283 ARQTIIGILKEHQFQEYVKGELEKLRKNVRINI 315


>gi|224456680|ref|ZP_03665153.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|282158767|gb|ADA78158.1| Peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 467

 Score = 68.5 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 108/271 (39%), Gaps = 13/271 (4%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN-----GELEKIAVQELIV 82
           V +       + ++    +N   IT  ++ + +A L+  + N       L++ A+Q+LI 
Sbjct: 40  VSMNVSDKKYLVNKTVAIVNSRPITSFELDQELAKLEAMQPNSAFNTDPLKRQALQDLIS 99

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           +++  Q  E++ I   +  ++      A   G+S E     ++  G+  + +K+ +  Q 
Sbjct: 100 QSVLLQLAERNNIMISNQQLDSAIQDIAAKNGVSVESLKLNVEAAGMSFDSYKKRIRDQL 159

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV------REYLIRTVLFSIPDNKLQNQG 196
           +   + +     +      EI    +K +          + Y ++ ++ ++PD+K   Q 
Sbjct: 160 MISQLQQQAIAQQVYVSPEEIQKYIKKHQKEFDREMSPVKLYTLKNLIVALPDSKKARQK 219

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKKSQ 254
            +    K A             +++F+   + VS G     ++ D  P    + + +   
Sbjct: 220 KIDLFKKLALAVNDGSIDFSEIVKQFSQAPNAVSGGIVSQQVKFDSIPDIYKEYIKELKN 279

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALK 285
           +  + P++    ++ I I +  +    ++ K
Sbjct: 280 HQVSQPFIVNHTLQMIYIYNIDEKAPILSKK 310



 Score = 50.1 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/271 (9%), Positives = 78/271 (28%), Gaps = 9/271 (3%)

Query: 53  DGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
             +  + ++ +KL  +   +  +   +   +       + +    D +      V+    
Sbjct: 188 QKEFDREMSPVKLYTLKNLIVALPDSKKARQKKIDLFKKLALAVNDGSIDFSEIVKQFSQ 247

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
              +          +        +    +      V   F++ +    + I    +K   
Sbjct: 248 APNAVSGGIVSQQVKFDSIPDIYKEYIKELKNHQ-VSQPFIVNHTLQMIYIYNIDEKAPI 306

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
           ++ +          I  +   N+   +  ++ A+ +     +      K+       + G
Sbjct: 307 LSKKVTKYYVYAIEIKLDGGMNEDGAKSSLERAKLAIESGQEFTKVALKYNQDYDHPN-G 365

Query: 233 KAQYLLESDLHP-----QFQNLLKKSQNNTTNPYVTQK-GVEYIAICDKRDLGGEIALKA 286
             +++ E D  P      F  L +  +N  + P+         I     ++      LK 
Sbjct: 366 NFKWVSELDSPPSLPPAAFAQLKQLKENELSEPFQADGRTWMIIKYTKTKEYDAAEQLKE 425

Query: 287 Y-LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                     K ++    ++  ++ +A I  
Sbjct: 426 QKALEAIFSEKAQEIYKTWLTSMKDDAYIEI 456


>gi|325982743|ref|YP_004295145.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas sp.
           AL212]
 gi|325532262|gb|ADZ26983.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas sp.
           AL212]
          Length = 627

 Score = 68.5 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/302 (8%), Positives = 83/302 (27%), Gaps = 38/302 (12%)

Query: 44  TTINGEVITDGDISKRIALLKLQKINGELEKI-------------------AVQELIVET 84
              NG V+ D  + K I  ++  + N +  K                       EL+++ 
Sbjct: 100 AVKNGFVVLDSQLIKTIQDVQAFQKNNKFSKQQYEELLRNQGLTPVIFESRVRNELLLQQ 159

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHA-----------RNTGLSAEDFSSFLDKQGIGDNH 133
           L     E +     +     +  +             +    +  + +            
Sbjct: 160 LLDGYSENAITPRTTTERVQYLSEVRREISQSKITPDQFLSQAIPEEADISAYYEQHKTD 219

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
           F      +  +  +            +  I     + ++   +    +     I  +   
Sbjct: 220 FDLPERAKVEYLVLSLEKVAKNEFVSDEAINTYFLEHQSEFGQSEERKASHILISVSPDA 279

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-----DVSIGKAQYLLESDLHPQFQN 248
            +   Q   + A+    ++ ++ ++  + A +        +  G   +     +   F++
Sbjct: 280 PEEEKQMAREKAKRILEQVKQNPDQFAEIAKEHSDDPGSAMRGGDLGFFARGVMVKSFED 339

Query: 249 LLKKSQ-NNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYV 305
            +   Q +  ++   T  G+  I +   ++        ++  +        +E    E V
Sbjct: 340 EIFSMQLDEISDIVETDFGLHIIKLTAIKEERHPDLEEVREQIENTLKVEMVESVFGEIV 399

Query: 306 KK 307
           + 
Sbjct: 400 ED 401



 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/215 (10%), Positives = 55/215 (25%), Gaps = 17/215 (7%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI-------------AL 62
           +     ++ F    + SY++          + GE I+  +  + +               
Sbjct: 14  VILGLAVLPFMFWGVESYRNDGSE-GYVAVVEGEEISRREYEQALRDHHERMRAMLGANF 72

Query: 63  LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ---HARNTGLSAED 119
                   E+    ++ LI + L  QE  K+G     + +           +N   S + 
Sbjct: 73  DSAMLDTSEVRSSVLERLIQQRLLYQEAVKNGFVVLDSQLIKTIQDVQAFQKNNKFSKQQ 132

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
           +   L  QG+    F+  +  + +   ++                          + +  
Sbjct: 133 YEELLRNQGLTPVIFESRVRNELLLQQLLDGYSENAITPRTTTERVQYLSEVRREISQSK 192

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
           I    F       +            +       K
Sbjct: 193 ITPDQFLSQAIPEEADISAYYEQHKTDFDLPERAK 227


>gi|226309691|ref|YP_002769585.1| foldase protein PrsA precursor [Brevibacillus brevis NBRC 100599]
 gi|226092639|dbj|BAH41081.1| putative foldase protein PrsA precursor [Brevibacillus brevis NBRC
           100599]
          Length = 355

 Score = 68.5 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/297 (9%), Positives = 75/297 (25%), Gaps = 9/297 (3%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL-----EKIAVQE 79
               P ++    A    +     G  +T  +  + + ++              +  +++ 
Sbjct: 50  LVQFPKLTLPYAADQKAVIVEYQGGTVTGKEFEEFLRVINFMNPQQGTMIEMADSKSLKA 109

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
              E    + +                 +           F    + Q       +    
Sbjct: 110 FAREFTATKVLASRSDDAMKKESKELAEKTFEKIKTQYMSFLGKDEAQFNKLMDGQGVTK 169

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
              +    + N   +      ++    KQ    +      + +V   +   + +      
Sbjct: 170 DMILNQMDLINQ-SINVMKKNIDDATLKQTYDQMDKASRTVASVRHILISTEKRTPEEAL 228

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLL-KKSQNNT 257
           K   D E    +         +F        S G  +    +   P+F+     +     
Sbjct: 229 KISNDLEARLKKGEDFAKLATEFTDDPGSKQSGGLYENADVTQWVPEFKEASLTQKVGEV 288

Query: 258 TNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             P  T  G   I + ++++      +K  L A +     +      + KL +   I
Sbjct: 289 GPPVKTNFGYHIIKVENRKE-KTFDEMKEQLRASSLEKAYDTFAKTELDKLITKFNI 344


>gi|56707610|ref|YP_169506.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110670081|ref|YP_666638.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
           tularensis subsp. tularensis FSC198]
 gi|254370127|ref|ZP_04986133.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874430|ref|ZP_05247140.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604102|emb|CAG45101.1| Peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110320414|emb|CAL08484.1| Peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
           tularensis subsp. tularensis FSC198]
 gi|151568371|gb|EDN34025.1| hypothetical protein FTBG_01231 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840429|gb|EET18865.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           tularensis MA00-2987]
          Length = 473

 Score = 68.5 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 108/271 (39%), Gaps = 13/271 (4%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN-----GELEKIAVQELIV 82
           V +       + ++    +N   IT  ++ + +A L+  + N       L++ A+Q+LI 
Sbjct: 46  VSMNVSDKKYLVNKTVAIVNSRPITSFELDQELAKLEAMQPNSAFNTDPLKRQALQDLIS 105

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           +++  Q  E++ I   +  ++      A   G+S E     ++  G+  + +K+ +  Q 
Sbjct: 106 QSVLLQLAERNNIMISNQQLDSAIQDIAAKNGVSVESLKLNVEAAGMSFDSYKKRIRDQL 165

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV------REYLIRTVLFSIPDNKLQNQG 196
           +   + +     +      EI    +K +          + Y ++ ++ ++PD+K   Q 
Sbjct: 166 MISQLQQQAIAQQVYVSPEEIQKYIKKHQKEFDREMSPVKLYTLKNLIVALPDSKKARQK 225

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKKSQ 254
            +    K A             +++F+   + VS G     ++ D  P    + + +   
Sbjct: 226 KIDLFKKLALAVNDGSIDFSEIVKQFSQAPNAVSGGIVSQQVKFDSIPDIYKEYIKELKN 285

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALK 285
           +  + P++    ++ I I +  +    ++ K
Sbjct: 286 HQVSQPFIVNHTLQMIYIYNIDEKAPILSKK 316



 Score = 50.1 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/271 (9%), Positives = 78/271 (28%), Gaps = 9/271 (3%)

Query: 53  DGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
             +  + ++ +KL  +   +  +   +   +       + +    D +      V+    
Sbjct: 194 QKEFDREMSPVKLYTLKNLIVALPDSKKARQKKIDLFKKLALAVNDGSIDFSEIVKQFSQ 253

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
              +          +        +    +      V   F++ +    + I    +K   
Sbjct: 254 APNAVSGGIVSQQVKFDSIPDIYKEYIKELKNHQ-VSQPFIVNHTLQMIYIYNIDEKAPI 312

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
           ++ +          I  +   N+   +  ++ A+ +     +      K+       + G
Sbjct: 313 LSKKVTKYYVYAIEIKLDGGMNEDGAKSSLERAKLAIESGQEFTKVALKYNQDYDHPN-G 371

Query: 233 KAQYLLESDLHP-----QFQNLLKKSQNNTTNPYVTQK-GVEYIAICDKRDLGGEIALKA 286
             +++ E D  P      F  L +  +N  + P+         I     ++      LK 
Sbjct: 372 NFKWVSELDSPPSLPPAAFAQLKQLKENELSEPFQADGRTWMIIKYTKTKEYDAAEQLKE 431

Query: 287 Y-LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                     K ++    ++  ++ +A I  
Sbjct: 432 QKALEAIFSEKAQEIYKTWLTSMKDDAYIEI 462


>gi|322652369|gb|EFY48724.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
          Length = 481

 Score = 68.5 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/261 (9%), Positives = 71/261 (27%), Gaps = 20/261 (7%)

Query: 57  SKRIALLKLQKINGELEKIA--VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
            +    L+ Q    +L         ++     +     S        V       A+   
Sbjct: 8   DQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQV 67

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
              E  S +   +       +  ++   +    ++          + +I A   +  +  
Sbjct: 68  TDQEVSSYYDQNKARFMTPEQFRVSYIKLDAATMQAPV------SDADIQAYYDQHVDQF 121

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGK 233
            +   IR  +                      ++  +        ++ ++ I    + G 
Sbjct: 122 TQPERIRYSIIQTKTEDDAKAV---------LDALNKGEDFATLAKEKSTDIISARNGGD 172

Query: 234 AQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQ 291
             +L ES   P+ +N   K +   +    +  G     + D +    +    ++  ++A+
Sbjct: 173 MGWLEESATVPELKNAGLKEKGQISGVIKSSVGFLVARLDDIQPAKVKPLSEVRDDIAAK 232

Query: 292 NTPTKIEKHEAEYVKKLRSNA 312
               K         +K+   A
Sbjct: 233 VKQEKALDAYYALQQKVSDAA 253


>gi|172056725|ref|YP_001813185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Exiguobacterium
           sibiricum 255-15]
 gi|259534741|sp|B1YK87|PRSA_EXIS2 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|171989246|gb|ACB60168.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Exiguobacterium
           sibiricum 255-15]
          Length = 304

 Score = 68.5 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/301 (9%), Positives = 82/301 (27%), Gaps = 36/301 (11%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           +L +  +  + +  +   +        G  +   D+         +       +  + +L
Sbjct: 5   LLSVAAVASVFTLAACGSNDEAVINYKGGEVNKADVQDEA---YQKAGAQIAFQQTMNKL 61

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           + +        + G       V     +         +  ++        +  F++ L  
Sbjct: 62  LEK--------EYGKKVTDKEVEAEVKKTKDQFPDKEQFNTTLQTAGIKNEKEFEKVLRT 113

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           Q +  +        K  + E+E   N++K++                           + 
Sbjct: 114 QMLLKEAKSAK--SKVTDKEIEDRFNQEKVEVKASHIL-----------------VEKES 154

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKS--QNNT 257
             K  ++            +  ++        G   Y  +  +  +F+N   K   +   
Sbjct: 155 EAKAIKKQLDEGGDFAKIAKAKSTDTGSATKGGDLGYFTKGKMVEEFENYAFKDGVEGKI 214

Query: 258 TNPYVTQKGVEYIAICDKRDLGGEIALK--AYLSAQNTPTKIEKHE-AEYVKKLRSNAII 314
           ++P  TQ G   I + D+++       K    +       K  +    +  + L     +
Sbjct: 215 SDPIKTQFGYHIIKVTDRKEKKDFTLEKESDRIKKALAEEKSAQVNPNDIYRSLMKKYDV 274

Query: 315 H 315
            
Sbjct: 275 K 275


>gi|268315855|ref|YP_003289574.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
           DSM 4252]
 gi|262333389|gb|ACY47186.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
           DSM 4252]
          Length = 552

 Score = 68.5 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/299 (9%), Positives = 73/299 (24%), Gaps = 53/299 (17%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL---QKINGELEKIAVQELIVE 83
           ++ +    + +    +     G  IT     +      L   Q  +  L ++ ++++I E
Sbjct: 3   LLLLAGCHAGSAQQTLLAEGPGVHITADAFREAYLDYLLRTGQTDSPRLRRLFLEQMIRE 62

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            L   E  + G+                                        + +  + +
Sbjct: 63  ALVAYEARRQGLDRTPAYEEEA------------------------------RAVETKLL 92

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
                +          E E+     ++       +L                        
Sbjct: 93  VEAYARRVLYDTVRVREAELAEAFVRINTEVRARHLWAP--------------TRAAAES 138

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYV 262
                +     +      F       S G   +    ++ P F+++  +      ++P  
Sbjct: 139 LYARLQAGASFEELAAGVFRDTALARSGGDLGWFSFDEMDPAFEDVAFRLRPGEISSPVR 198

Query: 263 TQKGVEYIAICDK--RDL---GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           T  G   I + D+  + +         +  L       K +       + L  +  I +
Sbjct: 199 TAYGYSIIQVTDRFTKPILTETEFAQKRPLLERYLRYRKQQAAREACARSLADSLQIRF 257



 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/201 (7%), Positives = 48/201 (23%), Gaps = 13/201 (6%)

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
                + +              +  A+       V+          E  + A  +  +  
Sbjct: 339 RHVLAERARAAGLHRSPAFAQARQEALDRWLYRYVRQQVESGAAVPEDTLRAFYKAHRED 398

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV-SIG 232
                             L       +R      + L           ++ +     + G
Sbjct: 399 FRMPARRAV------WEILVPTEAEAQR----IRTLLTATPFEELARHYSRRPGAAATGG 448

Query: 233 KAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG--EIALKAYLSA 290
              ++ E+ L    + +    +     P     G   + +  ++          +  +  
Sbjct: 449 YLGFVAEAQLGAAGKAVFAAREGEVLGPLRIADGYVLLKVGAEQPERPMTFEEARPLIER 508

Query: 291 QNTPTKIEKHEAEYVKKLRSN 311
           Q  P  + +   E++ +L + 
Sbjct: 509 QLRPFFVRRRWQEHLAELAAR 529


>gi|124266895|ref|YP_001020899.1| putative rotamase/peptidyl-prolyl cis-trans isomerase family
           protein [Methylibium petroleiphilum PM1]
 gi|124259670|gb|ABM94664.1| putative rotamase/peptidyl-prolyl cis-trans isomerase family
           protein [Methylibium petroleiphilum PM1]
          Length = 264

 Score = 68.5 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 14/124 (11%), Positives = 41/124 (33%), Gaps = 4/124 (3%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN--LLKKS 253
               +   + +       +      + ++       G+  +L  +D  P+F      +  
Sbjct: 128 ELRSRSRSEIDAPVAEGDRFATAAARLSNCPSGEHGGELGWLEAADCAPEFARALFGQPE 187

Query: 254 QNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
                    T+ G+  + +  ++   + G  A++A + A            +++++L   
Sbjct: 188 LGMLPRLVHTRFGLHVVEVLQRQSGRVPGFEAVQASVRAALQRQAFATALRQHLQRLAGE 247

Query: 312 AIIH 315
           A I 
Sbjct: 248 AHIE 251


>gi|328676627|gb|AEB27497.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
           isomerase SurA) [Francisella cf. novicida Fx1]
          Length = 469

 Score = 68.5 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 119/309 (38%), Gaps = 23/309 (7%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-------ELEKIAVQEL 80
           V +       + ++    +N   IT  ++ + +A L+  + N        +L++ A+Q+L
Sbjct: 40  VSMNVSDKKYLVNKTVAIVNSRPITSFELDQELAKLEAMQPNSAFNTDPLKLKRQALQDL 99

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I +++  Q  E++ I   +  ++      A   G+S E     ++  G+  + +K+ +  
Sbjct: 100 ISQSVLLQLAERNNIMISNQQLDSAIQDIAAKNGVSVESLKLNVEAAGMSFDSYKKRIRD 159

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV------REYLIRTVLFSIPDNKLQN 194
           Q +   + +     +      EI    +K +          + Y ++ ++ ++PD+K   
Sbjct: 160 QLMISQLQQQAIAQQVYVSPEEIQKYIKKHQKEFDREMSPVKLYTLKNLIVALPDSKKAR 219

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKK 252
           Q  +    K A             +++F+   + VS G     ++ D  P    + + + 
Sbjct: 220 QKKIDLFKKLALAVNDGSIDFSEIVKQFSQAPNAVSGGIVSQQVKFDSIPDIYKEYIKEL 279

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY------LSAQNTPTKIEKHEAEYVK 306
             +  + P++    ++ I I +  +    ++ K        +  +   +  E+     ++
Sbjct: 280 KNHQVSQPFIVNHTLQMIYIDNIDEKAPILSKKVTKYYVYAIEIKLDGSMNEEGAKSSLE 339

Query: 307 KLRSNAIIH 315
             R+   I 
Sbjct: 340 --RAKLAIE 346



 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/271 (9%), Positives = 78/271 (28%), Gaps = 9/271 (3%)

Query: 53  DGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
             +  + ++ +KL  +   +  +   +   +       + +    D +      V+    
Sbjct: 190 QKEFDREMSPVKLYTLKNLIVALPDSKKARQKKIDLFKKLALAVNDGSIDFSEIVKQFSQ 249

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
              +          +        +    +      V   F++ +    + I    +K   
Sbjct: 250 APNAVSGGIVSQQVKFDSIPDIYKEYIKELKNHQ-VSQPFIVNHTLQMIYIDNIDEKAPI 308

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
           ++ +          I  +   N+   +  ++ A+ +     +      K+       + G
Sbjct: 309 LSKKVTKYYVYAIEIKLDGSMNEEGAKSSLERAKLAIESGQEFTKVALKYNQDYDHPN-G 367

Query: 233 KAQYLLESDLHP-----QFQNLLKKSQNNTTNPYVTQK-GVEYIAICDKRDLGGEIALKA 286
             +++ E D  P      F  L +  +N  + P+         I     ++      LK 
Sbjct: 368 NFRWVSELDSPPSLPPAAFAQLKQLKENELSEPFQADGRTWMIIKYTKTKEYDAAEQLKE 427

Query: 287 Y-LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                     K ++    ++  ++ +A I  
Sbjct: 428 QKALEAIFSEKAQEIYKTWLTSMKDDAYIEI 458


>gi|254372525|ref|ZP_04988014.1| hypothetical protein FTCG_00087 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570252|gb|EDN35906.1| hypothetical protein FTCG_00087 [Francisella novicida GA99-3549]
          Length = 469

 Score = 68.5 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 119/309 (38%), Gaps = 23/309 (7%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-------ELEKIAVQEL 80
           V +       + ++    +N   IT  ++ + +A L+  + N        +L++ A+Q+L
Sbjct: 40  VSMNVSDKKYLVNKTVAIVNSRPITSFELDQELAKLEAMQPNSAFNTDPLKLKRQALQDL 99

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I +++  Q  E++ I   +  ++      A   G+S E     ++  G+  + +K+ +  
Sbjct: 100 ISQSVLLQLAERNNIMISNQQLDSAIQDIAAKNGVSVESLKLNVEAAGMSFDSYKKRIRD 159

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV------REYLIRTVLFSIPDNKLQN 194
           Q +   + +     +      EI    +K +          + Y ++ ++ ++PD+K   
Sbjct: 160 QLMISQLQQQAIAQQVYVSPEEIQKYIKKHQKEFDREMSPVKLYTLKNLIVALPDSKKAR 219

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKK 252
           Q  +    K A             +++F+   + VS G     ++ D  P    + + + 
Sbjct: 220 QKKIDLFKKLALAVNDGSIDFSEIVKQFSQAPNAVSGGIVSQQVKFDSIPDIYKEYIKEL 279

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY------LSAQNTPTKIEKHEAEYVK 306
             +  + P++    ++ I I +  +    ++ K        +  +   +  E+     ++
Sbjct: 280 KNHQVSQPFIVNHTLQMIYIDNIDEKAPILSKKVTKYYVYAIEIKLDGSMNEEGAKSSLE 339

Query: 307 KLRSNAIIH 315
             R+   I 
Sbjct: 340 --RAKLAIE 346



 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/271 (9%), Positives = 78/271 (28%), Gaps = 9/271 (3%)

Query: 53  DGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
             +  + ++ +KL  +   +  +   +   +       + +    D +      V+    
Sbjct: 190 QKEFDREMSPVKLYTLKNLIVALPDSKKARQKKIDLFKKLALAVNDGSIDFSEIVKQFSQ 249

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
              +          +        +    +      V   F++ +    + I    +K   
Sbjct: 250 APNAVSGGIVSQQVKFDSIPDIYKEYIKELKNHQ-VSQPFIVNHTLQMIYIDNIDEKAPI 308

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
           ++ +          I  +   N+   +  ++ A+ +     +      K+       + G
Sbjct: 309 LSKKVTKYYVYAIEIKLDGSMNEEGAKSSLERAKLAIESGQEFTKVALKYNQDYDHPN-G 367

Query: 233 KAQYLLESDLHP-----QFQNLLKKSQNNTTNPYVTQK-GVEYIAICDKRDLGGEIALKA 286
             +++ E D  P      F  L +  +N  + P+         I     ++      LK 
Sbjct: 368 NFRWVSELDSPPSLPPAAFAQLKQLKENELSEPFQADGRTWMIIKYTKTKEYDAAEQLKE 427

Query: 287 Y-LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                     K ++    ++  ++ +A I  
Sbjct: 428 QKALEAIFSEKAQEIYKTWLTSMKDDAYIEI 458


>gi|331000463|ref|ZP_08324138.1| PPIC-type PPIASE domain protein [Parasutterella excrementihominis
           YIT 11859]
 gi|329571795|gb|EGG53475.1| PPIC-type PPIASE domain protein [Parasutterella excrementihominis
           YIT 11859]
          Length = 641

 Score = 68.2 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/247 (9%), Positives = 68/247 (27%), Gaps = 16/247 (6%)

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH------ARNTGLSAEDFSSFLDK 126
             +    L+    +   + K  +   ++ +    V        +                
Sbjct: 155 RDLVQDMLVNSVAQTTFVPKKTVALLNDILRETRVVRTMSFDPSSYMKDVKVSEEQIKKY 214

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
                + ++   ++   +  +      +     E E+    ++ +     E   R     
Sbjct: 215 YDEHKDDYRAPESLNIQFVVMSPETVKMTAEPSEQELKDFYEQNRKKYEVEESRRAAHIL 274

Query: 187 IPDNKLQ------NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
           I  +  +      +Q    K  K   E +    K     ++ ++      S G   +  +
Sbjct: 275 IAPDANEADKAKADQDAKAKAEKILAEVKADPSKFAQLAKENSADPGTAESGGDLDFFTQ 334

Query: 240 SDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTK 296
             + P+F + +    ++    P  T+ G   I + D           +++ +        
Sbjct: 335 GQMVPEFDKAVFGAKKDEIVGPVKTEFGYHIIHVTDINPAHVRPFEEVRSEILKFWQDQH 394

Query: 297 IEKHEAE 303
            +   AE
Sbjct: 395 RQSMFAE 401



 Score = 46.2 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/312 (8%), Positives = 83/312 (26%), Gaps = 30/312 (9%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
           F +   ++ L+    ++  F  + I  Y      +     ++G+ I   +   +      
Sbjct: 5   FRNQKRWLMLIAMILIIPAFVFIGINGYSRLNPDANAIAKVDGKGIQPEEFDYQKREYIE 64

Query: 66  QKIN-------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ---H 109
           +                 E     +Q +      + ++    +                 
Sbjct: 65  RMRQQEGGAVDPSIFETQEANAAILQNIATRRALQAQMAHHYMNVSEADAINVIKNADAF 124

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
            ++   S E + ++L  +G  D  F   L    +   +V +  + +   +  +  A    
Sbjct: 125 KKDGQFSPELYENYLAARGKSDQQFVYELRRDLVQDMLVNS--VAQTTFVPKKTVALLND 182

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
           +   T     +     S   +   ++  ++K   + ++          +    + +   +
Sbjct: 183 ILRETRVVRTMSFDPSSYMKDVKVSEEQIKKYYDEHKDDYRAPESLNIQFVVMSPETVKM 242

Query: 230 SIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIA---ICDKRDLGGEIALKA 286
           +         ++   Q      +          +++    +      +      +   KA
Sbjct: 243 T---------AEPSEQELKDFYEQNRKKYEVEESRRAAHILIAPDANEADKAKADQDAKA 293

Query: 287 YLSAQNTPTKIE 298
                    K +
Sbjct: 294 KAEKILAEVKAD 305


>gi|255011715|ref|ZP_05283841.1| putative exported isomerase [Bacteroides fragilis 3_1_12]
 gi|313149550|ref|ZP_07811743.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis 3_1_12]
 gi|313138317|gb|EFR55677.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis 3_1_12]
          Length = 517

 Score = 68.2 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/298 (10%), Positives = 82/298 (27%), Gaps = 41/298 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    V  + C+   ++   +A    +   ING+ I+  +     +     K +G   K 
Sbjct: 1   MKKILVGALTCLFGFIA--GYARQDPVLMRINGQDISRSEFE---SFYHRNKPSGVSGKE 55

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           A++  +                                 L  +        Q  G +   
Sbjct: 56  ALKVCVD--------------------------------LFVDKKLKLHAAQRAGLDTLS 83

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
            + A    +   +   ++      E        +MK+ ++   +    +F          
Sbjct: 84  AFRAEMDNYHRSLSKSYLTDSSAEEACARKLYDQMKSRSISGEVRVMHIFRYLPQTALPH 143

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
              + +        +              +  D       ++       +F+ +      
Sbjct: 144 HLREAQALMDSLYNVLKTNPDTDFRTLVDQYSDDKAES--WISWLQTPQEFEEVAFSLKD 201

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN-TPTKIEKHEAEYVKKLRSN 311
              + P+ T KG+  + +  +R+L     ++  L  +       +K     V KL+ +
Sbjct: 202 GEYSQPFFTPKGLHIVKVTGRRELPPFEQIRDRLIRKLSYRPGADKGTEILVNKLKES 259


>gi|90021259|ref|YP_527086.1| peptidase M20D, amidohydrolase [Saccharophagus degradans 2-40]
 gi|89950859|gb|ABD80874.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Saccharophagus
           degradans 2-40]
          Length = 621

 Score = 68.2 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/195 (10%), Positives = 48/195 (24%), Gaps = 9/195 (4%)

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
                         F     +   + ++   +        E +I A  ++ K   V    
Sbjct: 208 PEQIEAYYQANQQEFSVPEKVSVDYIEISVAEIAKTIAVDEADIKAQYEQEKADFVESSE 267

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLL 238
                  I      +      +I++ +             E ++       + G    L 
Sbjct: 268 YEIAHILI-----ADGDESASKIEEVQTQLAAGEAFETLAETYSDDFGSRETGGSLGVLT 322

Query: 239 ESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPT 295
                 +F+  +    +   + P  T  G  +I +  K+          K  +       
Sbjct: 323 TGIFPEEFEQAVYALEEGEVSEPVTTDAGTHFIKVTSKKVEALASYEERKPEIKKAIQNL 382

Query: 296 KIEKHEAEYVKKLRS 310
           + E    +   +L  
Sbjct: 383 RAESFYVDQYAELEE 397


>gi|51473852|ref|YP_067609.1| hypothetical protein RT0667 [Rickettsia typhi str. Wilmington]
 gi|81389996|sp|Q68W65|Y667_RICTY RecName: Full=Uncharacterized protein RT0667; Flags: Precursor
 gi|51460164|gb|AAU04127.1| rickettsial conserved hypothetical protein [Rickettsia typhi str.
           Wilmington]
          Length = 295

 Score = 68.2 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 94/301 (31%), Gaps = 23/301 (7%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------INGELE 73
           L++   V      + A  + I  ++N + IT  +   R  ++ +           + +L 
Sbjct: 4   LLLIITVFSTFNVAQASLTSIVASVNDKPITFNEFHARKKMIMVLNNVENLTSDQDKQLS 63

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
            +A+  LI E+L  Q           + ++           +       +L  + +    
Sbjct: 64  DLAINSLIDESLLFQYAGDRE--IQQDEIDNAIKSIEDRNKMPHGSLLQYLKNKSVNPES 121

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
           F   +  + I  +++ +           EI           V   +         +    
Sbjct: 122 FIFQIKSELIKMNILSS-LSRSVQVSNKEIDVAILSSDQKDVEILMQVFRSKDGSNKAFT 180

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS 253
              +++ R+K   + +  L      ++   SK+          + ++ +           
Sbjct: 181 KMNYLKNRLKKCSDVKKTLYDKFATMQLITSKLSK-----LGGVKQTIVKDLI------- 228

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            +  +N +      E I +C K+ L   +    Y+    T  KI +   +  K +R  A 
Sbjct: 229 PDKASNVFEVNNKFEIILVCSKKILNVTVDENNYVVNFLTNKKISQKAQKIFKNMRKKAA 288

Query: 314 I 314
           I
Sbjct: 289 I 289


>gi|239815915|ref|YP_002944825.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus
           S110]
 gi|239802492|gb|ACS19559.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus
           S110]
          Length = 261

 Score = 68.2 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 83/278 (29%), Gaps = 48/278 (17%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKIN--GELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG+ +    +      L         E++    +E++   +  QE +K G+    +
Sbjct: 27  AAIVNGKPVPKARMDVLAQQLAAAGRPVTPEMQGQLREEIVAREVFMQEAQKQGLDATDD 86

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
             N                                  LA Q+I    +  ++       +
Sbjct: 87  YRNQL-------------------------------ELARQAILIRALFENYRKTSPVSD 115

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+ A   K       +      +              + + K       +  K  +  +
Sbjct: 116 AEVKAEYDKFVAANGGKEYKARHILV----------ETEDQAKKIMADLKKGAKFEDIAK 165

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDKRD 277
           K +       + G   +   +   P+F + ++K  +  TT  P  TQ G   I + D R 
Sbjct: 166 KQSKDPGSGANGGDLDWANPASFVPEFSEAMIKLKKGETTPAPVKTQFGYHIIRVDDVRQ 225

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                     +  Q T    ++   +Y ++LR+ A + 
Sbjct: 226 AQL--PKLEEVQPQITQQLQQQRLQKYQEELRAKAKVE 261


>gi|118497158|ref|YP_898208.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
           tularensis subsp. novicida U112]
 gi|194323456|ref|ZP_03057233.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           novicida FTE]
 gi|118423064|gb|ABK89454.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella novicida
           U112]
 gi|194322311|gb|EDX19792.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           novicida FTE]
          Length = 469

 Score = 68.2 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 110/273 (40%), Gaps = 15/273 (5%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-------ELEKIAVQEL 80
           V +       + ++    +N   IT  ++ + +A L+  + N        +L++ A+Q+L
Sbjct: 40  VSMNVSDKKYLVNKTVAIVNSRPITSFELDQELAKLEAMQPNSAFNTDPLKLKRQALQDL 99

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I +++  Q  E++ IT  +  ++      A   G+S E     ++  G+  + +K+ +  
Sbjct: 100 ISQSVLLQLAERNNITISNQQLDSAIQDIAAKNGVSVESLKLNVEAAGMSFDSYKKRIRD 159

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV------REYLIRTVLFSIPDNKLQN 194
           Q +   + +     +      EI    +K +          + Y ++ ++ ++PD+K   
Sbjct: 160 QLMISQLQQQAIAQQVYVSPEEIQKYIKKHQKEFDREMSPVKLYTLKNLIVALPDSKKAR 219

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKK 252
           Q  +    K A             +++F+   + VS G     ++ D  P    + + + 
Sbjct: 220 QKKIDLFKKLALAVNDGSIDFSEIVKQFSQAPNAVSGGIVSQQVKFDSIPDIYKEYIKEL 279

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK 285
             +  + P++    ++ I I +  +    ++ K
Sbjct: 280 KNHQVSQPFIVNHTLQMIYIDNIDEKAPILSKK 312



 Score = 50.8 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/271 (9%), Positives = 78/271 (28%), Gaps = 9/271 (3%)

Query: 53  DGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
             +  + ++ +KL  +   +  +   +   +       + +    D +      V+    
Sbjct: 190 QKEFDREMSPVKLYTLKNLIVALPDSKKARQKKIDLFKKLALAVNDGSIDFSEIVKQFSQ 249

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
              +          +        +    +      V   F++ +    + I    +K   
Sbjct: 250 APNAVSGGIVSQQVKFDSIPDIYKEYIKELKNHQ-VSQPFIVNHTLQMIYIDNIDEKAPI 308

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
           ++ +          I  +   N+   +  ++ A+ +     +      K+       + G
Sbjct: 309 LSKKVTKYYVYAIEIKLDGGMNEDGAKSSLERAKLAIESGQEFTKVALKYNQDYDHPN-G 367

Query: 233 KAQYLLESDLHP-----QFQNLLKKSQNNTTNPYVTQK-GVEYIAICDKRDLGGEIALKA 286
             +++ E D  P      F  L +  +N  + P+         I     ++      LK 
Sbjct: 368 NFRWVSELDSPPSLPPAAFAQLKQLKENELSEPFQADGRTWMIIKYTKTKEYDAAEQLKE 427

Query: 287 Y-LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                     K ++    ++  ++ +A I  
Sbjct: 428 QKALEAIFSEKAQEIYKTWLTSMKDDAYIEI 458


>gi|315453271|ref|YP_004073541.1| hypothetical protein HFELIS_08670 [Helicobacter felis ATCC 49179]
 gi|315132323|emb|CBY82951.1| putative periplasmic protein [Helicobacter felis ATCC 49179]
          Length = 346

 Score = 68.2 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 94/279 (33%), Gaps = 32/279 (11%)

Query: 42  IRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           I  T+N + IT   I  +     +        + AV  LI++ ++ QEI++  I  + + 
Sbjct: 93  IAITVNNDPITIYQIETQEKEHHIS------RQQAVNALILQRIQAQEIKRLKIDIEDDK 146

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
           ++      AR+ G+  +DF   L  +GI    +K  L  Q    ++++N  +        
Sbjct: 147 IDAEIENIARHNGMDMQDFLRTLASEGINPTTYKAQLKKQLETRELLRNILLFNTNTNSE 206

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
                                 +     +       ++ R  D         K       
Sbjct: 207 TKMREYYNAHKSEFSVPSEIITIRYTAQDTQALTKALENRNLDIPGVTKGEEK------- 259

Query: 222 FASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKG--VEYIAICDK--RD 277
                          +    L+PQ   +   +Q +T  P +   G       I +K  ++
Sbjct: 260 ---------------INIKTLNPQIAQMFLSTQEHTFTPILNAGGGNFVSFYIKEKIGKE 304

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                  K +++ +    + +K  AEY +KLR  A I +
Sbjct: 305 NVSFSQAKHFIANKLIEEQQDKILAEYYEKLRVKAKIKF 343


>gi|86133091|ref|ZP_01051673.1| peptidylprolyl isomerase [Polaribacter sp. MED152]
 gi|85819954|gb|EAQ41101.1| peptidylprolyl isomerase [Polaribacter sp. MED152]
          Length = 459

 Score = 68.2 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/279 (10%), Positives = 82/279 (29%), Gaps = 13/279 (4%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL--KLQK 67
           +  +K + +  ++  F +V   +  +      +   I   ++ D DI K    +  + + 
Sbjct: 5   TTILKFIKSAILVAFFGLVSTYT-SAQIKIDGVAVVIGKNIVLDSDIEKFKQEVEVRSEG 63

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
                +   ++EL+ + L         +T     ++    +               +   
Sbjct: 64  KIKISDCEMLEELMQQKLLAHHAVIDSVTVSDEEISSRVERSVAFFTEQFGSVDKVIKAY 123

Query: 128 GIGDNHFKQYLAIQSIWPDVV----KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
           G  D    +         +V+    +     K      E+      +K           +
Sbjct: 124 GFNDLDDLKKELYSVQSENVLIEKEQLKITDKIDVTPEEVRLYYVGLKEDGELPEFSAEI 183

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD-----VSIGKAQYLL 238
             +    K +      +RI +      +  +D    +  A    D      + G+ +   
Sbjct: 184 ELAQLVIKAKPTEEENQRIINKLNELKKEIEDGANFKMKAIINSDDPGVTNNGGRYEVTK 243

Query: 239 ESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR 276
           ES    +F+ +         + P+ +  G   + + + +
Sbjct: 244 ESQFIKEFKEMAFSLDVGQVSKPFKSDFGYHLMQLHEIK 282


>gi|304405851|ref|ZP_07387509.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           curdlanolyticus YK9]
 gi|304345094|gb|EFM10930.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           curdlanolyticus YK9]
          Length = 403

 Score = 68.2 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/280 (9%), Positives = 79/280 (28%), Gaps = 8/280 (2%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI---AVQELIVETLKKQEI 90
            S + +S +  T  G  +T+ + +K      L   +  +      A ++ + E +  + +
Sbjct: 82  ASNSSNSTVIATYKGGEVTEEEFTKYTTFYSLFDQSFAMYLQIPEAKEQYLKEYVGYKTL 141

Query: 91  EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
                  D  + +       +         +              + ++        ++ 
Sbjct: 142 YDRSSEDDKKSADTEVATFIKQYNEQLTSNAEMKKTVDAAGLTE-KDVSGFYKQIVTIRK 200

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTV-LFSIPDNKLQNQGFVQKRIKDAEESR 209
            +     + +++    K K     V    I    +      + +      K  K+ +   
Sbjct: 201 YWERNVSDADIKAEYEKNKGGYNLVSVRHILISTVDPSTGEEKRKDEEALKIAKEVKAKL 260

Query: 210 LRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGV 267
            +         +++       + G  +    +    +F+             P  +Q G 
Sbjct: 261 DKGGDWKALANQYSDDEGSKGNGGLYENASPNSWVAEFKEAAITQPVGTVGEPVKSQYGY 320

Query: 268 EYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
             + + +KR+      L   +  Q     I     +++ K
Sbjct: 321 HVMKV-EKRESKKFEELSEDVKTQVKTGAINTKMGDFMTK 359


>gi|134094865|ref|YP_001099940.1| putative peptidyl-prolyl cis-trans isomerase (NifM related)
           [Herminiimonas arsenicoxydans]
 gi|133738768|emb|CAL61815.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase
           [Herminiimonas arsenicoxydans]
          Length = 248

 Score = 68.2 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/276 (11%), Positives = 78/276 (28%), Gaps = 47/276 (17%)

Query: 44  TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            ++NG  I D  I +    L   +  G   K +V EL++ T+   E ++ G        +
Sbjct: 3   VSVNGIEIPDAAIEQE---LPHHQHAGNPLKQSVHELVLRTVLLHEADRLG--IAGAGDD 57

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
                         +   +                                         
Sbjct: 58  GRIEALFAQEVRVPDADEAACATFYRNQPQRFT--------------------------- 90

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
                     +      R +LF +  +        +       E R+   +      +++
Sbjct: 91  ----------SGELVEARHILFQVTPSVPLE-LLRETGEAVLAELRVHPERFAELAREYS 139

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTN-PYVTQKGVEYIAICDK--RDLG 279
           +       G    L      P+F+  + +  +    +    T+ G+  + +  +   ++ 
Sbjct: 140 NCASGTVGGNLGQLTRGQTVPEFEALVFRLPEGELADRLLETRFGLHIVQVLRRVAGEVV 199

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
              A+KA ++   +    ++   +Y++ L   A I 
Sbjct: 200 PLEAVKAQIADHLSRQAWQRAVHQYLQILVGRADIQ 235


>gi|152991687|ref|YP_001357408.1| hypothetical protein SUN_0091 [Sulfurovum sp. NBC37-1]
 gi|151423548|dbj|BAF71051.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 273

 Score = 68.2 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 82/285 (28%), Gaps = 33/285 (11%)

Query: 33  YKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEK 92
           +    M + +  T++GE IT  +I       K+Q+  G  ++ A+  LI + L+K+ ++ 
Sbjct: 15  FSHARMVNAVALTVDGEAITTNEIK------KVQRKTGMSKQQAIDLLIQDRLQKEAMK- 67

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
             I     T++    Q A    +S       L KQG   + +++ +          K   
Sbjct: 68  -SIKISEETIDAKIAQIANLNNISIPKMQKMLKKQGTSWSKYRESIRQALKKERFFKEKI 126

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
                    +      +                       +     +K +++   +    
Sbjct: 127 SRNITPPSEDQLKLYYETHKEAFAMPTSIR--------MTEYSAKSEKVLQNFLRTGSAK 178

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAI 272
                   K                 +         LL       T P           +
Sbjct: 179 GIKSISATK---------------KTKGMNPAMLSMLLSTPDGRFTKPINAGDKWVVFKV 223

Query: 273 CDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             K  R L      +  ++ +    +  +   +Y  K+++ A I 
Sbjct: 224 NGKQGRKLLPFEEARNAVAGRWRQEQQNQALKDYFSKMKTEANIK 268


>gi|170733279|ref|YP_001765226.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia MC0-3]
 gi|169816521|gb|ACA91104.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia MC0-3]
          Length = 645

 Score = 68.2 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/271 (8%), Positives = 59/271 (21%), Gaps = 22/271 (8%)

Query: 55  DISKRIALLKLQ-KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
           D+ +   LL  Q     + ++     L ++ +    +  +                 R  
Sbjct: 135 DVERYAQLLSFQGMTPEQYQERVRYSLSLQQIPASIVSSAFTPKSLAQRLSELAAQQREV 194

Query: 114 GLSAEDFSSFLDKQGIGDNH---FKQYLAIQSIWPDVVKNDF--------MLKYGNLEME 162
                  S F  K    D     +          P+     +               E +
Sbjct: 195 QALVLKTSDFAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVYSPAAAAASAQPTEAD 254

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           I             E  +R     I      +          AE+    +    ++  + 
Sbjct: 255 IKKFYDDNPTHFRTEAQVRVSHIFIAAPGSASAADKAAAKAKAEQLLADVKAHPDQFAQI 314

Query: 223 A-----SKIHDVSIGKAQYLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAICD 274
           A             G   ++                   Q + +    +  G   +   +
Sbjct: 315 AQKSSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFSLKQGDVSGIVQSDLGFHILKATE 374

Query: 275 KRD--LGGEIALKAYLSAQNTPTKIEKHEAE 303
            +   +     +K  ++         K  ++
Sbjct: 375 VKPAVVKPFAEVKDQIAVDLKQQYASKAFSD 405



 Score = 43.9 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 20/211 (9%), Positives = 53/211 (25%), Gaps = 15/211 (7%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN-------------GELE 73
            V I  ++ +   S     +NG  IT  +          Q                 E  
Sbjct: 26  FVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAFRQQIDQARQALGGQFDIKMFDTPEHR 85

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV--QHARNTGLSAEDFSSFLDKQGIGD 131
           K  +  LI + +   E +   +T   N V    +      +              Q +  
Sbjct: 86  KQVLDGLIQQRVLADETQHLHLTASDNAVRDALMSDPMIASLKKPDGTIDVERYAQLLSF 145

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                    + +   +          +      +  Q++  +  ++  ++ ++    D  
Sbjct: 146 QGMTPEQYQERVRYSLSLQQIPASIVSSAFTPKSLAQRLSELAAQQREVQALVLKTSDFA 205

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            + Q    +     +  +           ++
Sbjct: 206 AKVQPTDAQLTAYYDAHKQSFATPETATIQY 236


>gi|89256873|ref|YP_514235.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
           tularensis subsp. holarctica LVS]
 gi|167009233|ref|ZP_02274164.1| peptidylprolyl isomerase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|290953904|ref|ZP_06558525.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312729|ref|ZP_06803471.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89144704|emb|CAJ80035.1| Peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
           tularensis subsp. holarctica LVS]
          Length = 469

 Score = 68.2 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 109/273 (39%), Gaps = 15/273 (5%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-------ELEKIAVQEL 80
           V +       + ++    +N   IT  ++ + +A L+  + N        +L++ A+Q+L
Sbjct: 40  VSMNVSDKKYLVNKTVAIVNSRPITSFELDQELAKLEAMQPNSAFNTDPLKLKRQALQDL 99

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I +++  Q  E++ I   +  ++      A   G+S E     ++  G+  + +K+ +  
Sbjct: 100 ISQSVLLQLAERNNIMISNQQLDSAIQDIAAKNGVSVESLKLNVEAAGMSFDSYKKRIRD 159

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV------REYLIRTVLFSIPDNKLQN 194
           Q +   + +     +      EI    +K +          + Y ++ ++ ++PD+K   
Sbjct: 160 QLMISQLQQQAIAQQVYVSPEEIQKYIKKHQKEFDREMSPVKLYTLKNLIVALPDSKKAR 219

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKK 252
           Q  +    K A             +++F+   + VS G     ++ D  P    + + + 
Sbjct: 220 QKKIDLFKKLALAVNNGSIDFSEIVKQFSQAPNAVSGGIVSQQVKFDSIPDIYKEYIKEL 279

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK 285
             +  + P++    ++ I I +  +    ++ K
Sbjct: 280 KNHQVSQPFIVNHTLQMIYIDNIDEKAPILSKK 312



 Score = 49.7 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/271 (9%), Positives = 78/271 (28%), Gaps = 9/271 (3%)

Query: 53  DGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
             +  + ++ +KL  +   +  +   +   +       + +    + +      V+    
Sbjct: 190 QKEFDREMSPVKLYTLKNLIVALPDSKKARQKKIDLFKKLALAVNNGSIDFSEIVKQFSQ 249

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
              +          +        +    +      V   F++ +    + I    +K   
Sbjct: 250 APNAVSGGIVSQQVKFDSIPDIYKEYIKELKNHQ-VSQPFIVNHTLQMIYIDNIDEKAPI 308

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
           ++ +          I  +   N+   +  ++ A+ +     +      K+       + G
Sbjct: 309 LSKKVTKYYVYAIEIKLDGGMNEDGAKSSLERAKLAIESGQEFTKVALKYNQDYDHPN-G 367

Query: 233 KAQYLLESDLHP-----QFQNLLKKSQNNTTNPYVTQK-GVEYIAICDKRDLGGEIALKA 286
             +++ E D  P      F  L +  +N  + P+         I     ++      LK 
Sbjct: 368 NFRWVSELDSPPSLPPAAFAQLKQLKENELSEPFQADGRTWMIIKYTKTKEYDAAEQLKE 427

Query: 287 Y-LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                     K +K    ++  ++ +A I  
Sbjct: 428 QKALEAIFSEKAQKIYKTWLTSMKDDAYIEI 458


>gi|254247971|ref|ZP_04941292.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia
           PC184]
 gi|124872747|gb|EAY64463.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia
           PC184]
          Length = 645

 Score = 68.2 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/271 (8%), Positives = 59/271 (21%), Gaps = 22/271 (8%)

Query: 55  DISKRIALLKLQ-KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
           D+ +   LL  Q     + ++     L ++ +    +  +                 R  
Sbjct: 135 DVERYAQLLSFQGMTPEQYQERVRYSLSLQQIPASIVSSAFTPKSLAQRLSELAAQQREV 194

Query: 114 GLSAEDFSSFLDKQGIGDNH---FKQYLAIQSIWPDVVKNDF--------MLKYGNLEME 162
                  S F  K    D     +          P+     +               E +
Sbjct: 195 QALVLKTSDFAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVYSPAAAAASAQPTEAD 254

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           I             E  +R     I      +          AE+    +    ++  + 
Sbjct: 255 IKKFYDDNPTHFRTEAQVRVSHIFIAAPGSASAADKAAAKAKAEQLLADVKAHPDQFAQI 314

Query: 223 A-----SKIHDVSIGKAQYLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAICD 274
           A             G   ++                   Q + +    +  G   +   +
Sbjct: 315 AQKSSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFSLKQGDVSGIVQSDLGFHILKATE 374

Query: 275 KRD--LGGEIALKAYLSAQNTPTKIEKHEAE 303
            +   +     +K  ++         K  ++
Sbjct: 375 VKPAVVKPFAEVKDQIAVDLKQQYASKAFSD 405



 Score = 44.3 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/211 (9%), Positives = 54/211 (25%), Gaps = 15/211 (7%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN-------------GELE 73
            V I  ++ +   S     +NG  IT  +          Q                 E  
Sbjct: 26  FVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAFRQQIDQARQALGGQFDIKMFDTPEHR 85

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV--QHARNTGLSAEDFSSFLDKQGIGD 131
           K  +  LI + +   E ++  +T   N V    +      +              Q +  
Sbjct: 86  KQVLDGLIQQRVLADETQRLHLTASDNAVRDALMSDPMIASLKKPDGTIDVERYAQLLSF 145

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                    + +   +          +      +  Q++  +  ++  ++ ++    D  
Sbjct: 146 QGMTPEQYQERVRYSLSLQQIPASIVSSAFTPKSLAQRLSELAAQQREVQALVLKTSDFA 205

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            + Q    +     +  +           ++
Sbjct: 206 AKVQPTDAQLTAYYDAHKQSFATPETATIQY 236


>gi|254373986|ref|ZP_04989468.1| peptidyl-prolyl cis-trans isomerase [Francisella novicida
           GA99-3548]
 gi|151571706|gb|EDN37360.1| peptidyl-prolyl cis-trans isomerase [Francisella novicida
           GA99-3548]
          Length = 469

 Score = 68.2 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 120/309 (38%), Gaps = 23/309 (7%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-------ELEKIAVQEL 80
           + +       + ++    +N   IT  ++ + +A L+  + N        +L++ A+Q+L
Sbjct: 40  ISMNVSDKKYLVNKTVAIVNSRPITSFELDQELAKLEAMQPNSAFNTDPLKLKRQALQDL 99

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I +++  Q  E++ IT  +  ++      A   G+S E     ++  G+  + +K+ +  
Sbjct: 100 ISQSVLLQLAERNNITISNQQLDSAIQDIAAKNGVSVESLKLNVEAAGMSFDSYKKRIRD 159

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV------REYLIRTVLFSIPDNKLQN 194
           Q +   + +     +      EI    +K +          + Y ++ ++ ++PD+K   
Sbjct: 160 QLMISQLQQQAIAQQVYVSPEEIQKYIKKHQKEFDREMSPVKLYTLKNLIVALPDSKKAR 219

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKK 252
           Q  +    K A             +++F+   + VS G     ++ D  P    + + + 
Sbjct: 220 QKKIDLFKKLALAVNDGSIDFSEIVKQFSQAPNAVSGGIVSQQVKFDSIPDIYKEYIKEL 279

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY------LSAQNTPTKIEKHEAEYVK 306
             +  + P++    ++ I I +  +    ++ K        +  +   +  E+     ++
Sbjct: 280 KNHQVSQPFIVNHTLQMIYIDNIDEKAPILSKKVTKYYVYAIEIKLDGSMNEEGAKSSLE 339

Query: 307 KLRSNAIIH 315
             R+   I 
Sbjct: 340 --RAKLAIE 346



 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/271 (9%), Positives = 78/271 (28%), Gaps = 9/271 (3%)

Query: 53  DGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
             +  + ++ +KL  +   +  +   +   +       + +    D +      V+    
Sbjct: 190 QKEFDREMSPVKLYTLKNLIVALPDSKKARQKKIDLFKKLALAVNDGSIDFSEIVKQFSQ 249

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
              +          +        +    +      V   F++ +    + I    +K   
Sbjct: 250 APNAVSGGIVSQQVKFDSIPDIYKEYIKELKNHQ-VSQPFIVNHTLQMIYIDNIDEKAPI 308

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
           ++ +          I  +   N+   +  ++ A+ +     +      K+       + G
Sbjct: 309 LSKKVTKYYVYAIEIKLDGSMNEEGAKSSLERAKLAIESGQEFTKVALKYNQDYDHPN-G 367

Query: 233 KAQYLLESDLHP-----QFQNLLKKSQNNTTNPYVTQK-GVEYIAICDKRDLGGEIALKA 286
             +++ E D  P      F  L +  +N  + P+         I     ++      LK 
Sbjct: 368 NFRWVSELDSPPSLPPAAFAQLKQLKENELSEPFQADGRTWMIIKYTKTKEYDAAEQLKE 427

Query: 287 Y-LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                     K ++    ++  ++ +A I  
Sbjct: 428 QKALEAIFSEKAQEIYKTWLTSMKDDAYIEI 458


>gi|269925897|ref|YP_003322520.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789557|gb|ACZ41698.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 398

 Score = 68.2 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/323 (10%), Positives = 83/323 (25%), Gaps = 45/323 (13%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL---- 65
              I ++    ++++  I   +  +     SR    +  E I   D  + + +  L    
Sbjct: 32  RLIISVVAIALLIVVLIIAVPLIKQYLWEPSRTLAVVGNERIRKADYDQYVKMQVLGITD 91

Query: 66  ------------QKINGELEKIA------------------VQELIVETLKKQEIEKSGI 95
                       +       +                    + ++I   +  Q   K GI
Sbjct: 92  APESLASLYQVYKTDPESFPQRVKDAINSSMFSTSDVDAYTLDQMINNLVLNQTASKLGI 151

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD-VVKNDFML 154
                 V     +     G SA   S          +  +     +       + +D+  
Sbjct: 152 NISDQEVQAKIREIMSVVGASATPTSLPTTTTPSATSTPQAKSTPRITPTAATLPSDYQN 211

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV-------QKRIKDAEE 207
              +L+     +     ++ VR  LIR         K   Q  V       +++ ++  +
Sbjct: 212 FVSSLQKSAGISMDMYASMLVRPALIRQRYLETKVPKSAEQVHVRHILVSTKQQAEEVIK 271

Query: 208 SRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQ 264
              +  K     ++ +      +  G   +         F++           + P  T 
Sbjct: 272 ELRQGKKFEVIAKEKSIDDQTKLKGGDLGWAPRGIYEKSFEDAAFALTKVGQISPPVQTS 331

Query: 265 KGVEYIAICDKRDLGGEIALKAY 287
            G   I +  +         +  
Sbjct: 332 YGWHVIQLLGREKDRPLTETQRQ 354


>gi|115315252|ref|YP_763975.1| peptidylprolyl isomerase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|169656704|ref|YP_001429113.2| hypothetical protein FTA_1682 [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|254368149|ref|ZP_04984169.1| peptidylprolyl isomerase [Francisella tularensis subsp. holarctica
           257]
 gi|115130151|gb|ABI83338.1| peptidylprolyl isomerase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253959|gb|EBA53053.1| peptidylprolyl isomerase [Francisella tularensis subsp. holarctica
           257]
 gi|164551772|gb|ABU62157.2| hypothetical protein FTA_1682 [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 475

 Score = 68.2 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 109/273 (39%), Gaps = 15/273 (5%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-------ELEKIAVQEL 80
           V +       + ++    +N   IT  ++ + +A L+  + N        +L++ A+Q+L
Sbjct: 46  VSMNVSDKKYLVNKTVAIVNSRPITSFELDQELAKLEAMQPNSAFNTDPLKLKRQALQDL 105

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I +++  Q  E++ I   +  ++      A   G+S E     ++  G+  + +K+ +  
Sbjct: 106 ISQSVLLQLAERNNIMISNQQLDSAIQDIAAKNGVSVESLKLNVEAAGMSFDSYKKRIRD 165

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV------REYLIRTVLFSIPDNKLQN 194
           Q +   + +     +      EI    +K +          + Y ++ ++ ++PD+K   
Sbjct: 166 QLMISQLQQQAIAQQVYVSPEEIQKYIKKHQKEFDREMSPVKLYTLKNLIVALPDSKKAR 225

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKK 252
           Q  +    K A             +++F+   + VS G     ++ D  P    + + + 
Sbjct: 226 QKKIDLFKKLALAVNNGSIDFSEIVKQFSQAPNAVSGGIVSQQVKFDSIPDIYKEYIKEL 285

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK 285
             +  + P++    ++ I I +  +    ++ K
Sbjct: 286 KNHQVSQPFIVNHTLQMIYIDNIDEKAPILSKK 318



 Score = 49.7 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/271 (9%), Positives = 78/271 (28%), Gaps = 9/271 (3%)

Query: 53  DGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
             +  + ++ +KL  +   +  +   +   +       + +    + +      V+    
Sbjct: 196 QKEFDREMSPVKLYTLKNLIVALPDSKKARQKKIDLFKKLALAVNNGSIDFSEIVKQFSQ 255

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
              +          +        +    +      V   F++ +    + I    +K   
Sbjct: 256 APNAVSGGIVSQQVKFDSIPDIYKEYIKELKNHQ-VSQPFIVNHTLQMIYIDNIDEKAPI 314

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
           ++ +          I  +   N+   +  ++ A+ +     +      K+       + G
Sbjct: 315 LSKKVTKYYVYAIEIKLDGGMNEDGAKSSLERAKLAIESGQEFTKVALKYNQDYDHPN-G 373

Query: 233 KAQYLLESDLHP-----QFQNLLKKSQNNTTNPYVTQK-GVEYIAICDKRDLGGEIALKA 286
             +++ E D  P      F  L +  +N  + P+         I     ++      LK 
Sbjct: 374 NFRWVSELDSPPSLPPAAFAQLKQLKENELSEPFQADGRTWMIIKYTKTKEYDAAEQLKE 433

Query: 287 Y-LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                     K +K    ++  ++ +A I  
Sbjct: 434 QKALEAIFSEKAQKIYKTWLTSMKDDAYIEI 464


>gi|268316846|ref|YP_003290565.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
           DSM 4252]
 gi|262334380|gb|ACY48177.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
           DSM 4252]
          Length = 291

 Score = 68.2 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 77/277 (27%), Gaps = 25/277 (9%)

Query: 41  RIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
            +   +    +T  ++++ + LL +Q  + E  +  +++ I   L  QE  + G+  D  
Sbjct: 24  DVVARVGQVYLTREELARALQLLPVQMDSTEASQQVIEQWITNQLLYQEALRRGLRNDPE 83

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                          +  +     ++ G         +             +  +    E
Sbjct: 84  VQRLLEENERSVLISALLEQLYQEEEAGEEGQPGPAEV-------QAYYERYKEQLRLRE 136

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
             +               + RT+                      E    R  ++  +  
Sbjct: 137 PYVRVRYLHTTREEDARTVHRTLQ-----------ETRAVLDSLWEALVDRYAENPEEAR 185

Query: 221 KFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
             A +    S         + L P  + L +    +             + + ++   G 
Sbjct: 186 LLAGRYFPESR----LFTAAVLAPLREALQRLRNGDVAPIIEIDGHYHVLQLVERLPAGT 241

Query: 281 EIALK---AYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              L+     ++ Q      ++  A  V++LR+ A +
Sbjct: 242 LPELRWIYDEVAQQARIQARKQIYARLVQRLRNEARV 278


>gi|197104155|ref|YP_002129532.1| hypothetical protein PHZ_c0689 [Phenylobacterium zucineum HLK1]
 gi|196477575|gb|ACG77103.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 266

 Score = 68.2 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/241 (9%), Positives = 61/241 (25%), Gaps = 6/241 (2%)

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I   L  QE +         T             L  E     L          +     
Sbjct: 6   IDSRLIAQESQNHPSGDPMETWTAAARALVVRQLLLTEARRRGLSPDPEAVGENQYETDE 65

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKM-KNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
           +S+   V++     +  +        +    K +T   +    +L         +    +
Sbjct: 66  ESLVRQVLEVAVEPQPPSETECRRVYEGMKGKFVTPTLFEASHILIEPAGEAEADWSEAE 125

Query: 200 KRIKDAEESRLRLPKDCNKLEKF-ASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
              +         P+   +     +S       G    +   +L    Q  ++   +  T
Sbjct: 126 AEARALIGVVGDSPQAFAEAAAARSSCPTAHQGGSLGQVRRGELVDSVQAAIEALADGET 185

Query: 259 N--PYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              P  +  G   + +  + +  +     ++  +             +++V  L + + +
Sbjct: 186 GTAPVRSPFGWHVVRLERRIEGRVLPYEIVEGRIRDMLEARAWAIGASQFVADLAAKSAV 245

Query: 315 H 315
            
Sbjct: 246 E 246


>gi|312961518|ref|ZP_07776019.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Pseudomonas fluorescens WH6]
 gi|311284197|gb|EFQ62777.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Pseudomonas fluorescens WH6]
          Length = 301

 Score = 68.2 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/239 (9%), Positives = 69/239 (28%), Gaps = 5/239 (2%)

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           +   L   E     + +         V  A    +  E     + + G+  +        
Sbjct: 49  VNGVLVTPEAMALELQYHPAESREAAVYLAARALVIRELLQQRIAELGLAVDIAPGENEE 108

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKM-KNITVREYLIRTVLFSIPDNKLQNQGFV- 198
           ++    +++ +  +   +    +        +  +     +R +L     + ++ +    
Sbjct: 109 EAATRLLLEREVKVPECDEATCLRYFDNNRGRFHSAPLLAVRHILLECAPDDIEARDLAH 168

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
            +          +  +      K+++       G    + +    P+ +  L        
Sbjct: 169 SQAEVLLLSLEEQPGQFAELALKYSACPSKAQGGSLGQVSKGQTVPELERQLFTLAPGLA 228

Query: 259 N-PYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             P  ++ G   I++  + +       A+   +  Q      +K   +Y++ L   A I
Sbjct: 229 GKPLESRYGWHVISVDQRIEGQPLPYEAVAVAIRTQLQQGVWQKALVQYLQTLIGAADI 287


>gi|312597426|pdb|3NRK|A Chain A, The Crystal Structure Of The Leptospiral Hypothetical
           Protein Lic12922
          Length = 325

 Score = 68.2 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/306 (12%), Positives = 92/306 (30%), Gaps = 18/306 (5%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKR-------IALLKLQKINGELEKIAVQEL 80
               +       +R+  T+    I++ D+             LK +          +  L
Sbjct: 2   AGSAAAPFTESLNRVIATVGTVSISELDLDDATEKYNRLQKHLKHEDYRKSFRTRIIDFL 61

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG--LSAEDFSSFLDKQGIGDNHFKQYL 138
           I   +     E+  I  +   V+    +     G     +   +     G+    +   L
Sbjct: 62  IDRAIVDVVAEEESIQVNEQRVDSEIEKRMEVMGITNRKQFEKTMETSSGMPFELWVTEL 121

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
             Q     +++    +     E EI +   + K+    E   R +  +  ++ +Q +  +
Sbjct: 122 PYQIKKGQLLQLKIAV-PPPNEQEIRSWYNQNKDKVGFEIRYRIISIAPENDSIQEENRL 180

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI--GKAQYLLESDLHPQFQNLL----KK 252
            K + +  +S L  P     +         +    G  +++   DL+   +         
Sbjct: 181 YKEVSEIRKSILADPSSFALIAGSPRNDPALRARRGMVEWISSFDLYKYSKITATIAAPL 240

Query: 253 SQNNTTNPYVTQKG-VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
                +  +  ++     + I  KR       L+  +       K E     ++K+ R+ 
Sbjct: 241 PNGGVSEVFRDERKRYCILKIEGKRPTPM-ENLRGGIQNILYRDKEEDTFHRWLKESRAE 299

Query: 312 AIIHYY 317
             I  +
Sbjct: 300 IPIQIF 305


>gi|325285384|ref|YP_004261174.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cellulophaga lytica
           DSM 7489]
 gi|324320838|gb|ADY28303.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cellulophaga lytica
           DSM 7489]
          Length = 475

 Score = 67.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 97/295 (32%), Gaps = 14/295 (4%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--LEKIAVQELIVETLK 86
            I S         +   +   VI D DI K +  L+ Q ++ +   +   + +L+ + L 
Sbjct: 41  TIKSNFKRIKLDGVSAVVGDYVILDSDIEKTLIDLRSQGVSEDDITKCGLLGKLMEDRLY 100

Query: 87  KQEIEKSGITFDSNTVN----YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
             +  +  +    + VN              G   +    +              +    
Sbjct: 101 AHQAVQDSLLVSDDEVNATSERQIQSLVGQIGSMDKLLKYYKKDSQEALREDLFKINKLR 160

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           +  + ++   + +      E+    +K+       +  +  +  I      ++   QK I
Sbjct: 161 MLSEKMQQKIIEEIEITPEEVRQFYKKIPKEERPVFGAQLEIAQIVKQPEASEEEKQKVI 220

Query: 203 KDAEESRLRLPKDCNKLEKFA-----SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNN 256
               + R  +    +  +  A      +    + G  +   E++   +F+++     +  
Sbjct: 221 DKLNKIREDVLVGGSSFKIKAIISSEDEGSRSNGGFYKIKKETNFVKEFKDVAFSLKEGE 280

Query: 257 TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            + P+ TQ G   I +   +    +      ++ + +  ++E+   E ++K+R  
Sbjct: 281 VSEPFETQFGFHIIYLEKIKGQERD-VRHILMAPKISDERLEEARLE-LEKIRQR 333


>gi|187932060|ref|YP_001892045.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|187712969|gb|ACD31266.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
           tularensis subsp. mediasiatica FSC147]
          Length = 469

 Score = 67.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 109/273 (39%), Gaps = 15/273 (5%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-------ELEKIAVQEL 80
           V +       + ++    +N   IT  ++ + +A L+  + N        +L++ A+Q+L
Sbjct: 40  VSMNVSDKKYLVNKTVAIVNSRPITSFELDQELAKLEAMQPNSAFNTDPLKLKRQALQDL 99

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I +++  Q  E++ I   +  ++      A   G+S E     ++  G+  + +K+ +  
Sbjct: 100 ISQSVLLQLAERNNIMISNQQLDSAIQDIAAKNGVSVESLKLNVEAAGMSFDSYKKRIRD 159

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV------REYLIRTVLFSIPDNKLQN 194
           Q +   + +     +      EI    +K +          + Y ++ ++ ++PD+K   
Sbjct: 160 QLMISQLQQQAIAQQVYVSPEEIQKYIKKHQKEFDREMSPVKLYTLKNLIVALPDSKKAR 219

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKK 252
           Q  +    K A             +++F+   + VS G     ++ D  P    + + + 
Sbjct: 220 QKKIDLFKKLALAVNDGSIDFSEIVKQFSQAPNAVSGGIVSQQVKFDSIPDIYKEYIKEL 279

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK 285
             +  + P++    ++ I I +  +    ++ K
Sbjct: 280 KNHQVSQPFIVNHTLQMIYIDNIDEKAPILSKK 312



 Score = 50.1 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/271 (9%), Positives = 78/271 (28%), Gaps = 9/271 (3%)

Query: 53  DGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
             +  + ++ +KL  +   +  +   +   +       + +    D +      V+    
Sbjct: 190 QKEFDREMSPVKLYTLKNLIVALPDSKKARQKKIDLFKKLALAVNDGSIDFSEIVKQFSQ 249

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
              +          +        +    +      V   F++ +    + I    +K   
Sbjct: 250 APNAVSGGIVSQQVKFDSIPDIYKEYIKELKNHQ-VSQPFIVNHTLQMIYIDNIDEKAPI 308

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
           ++ +          I  +   N+   +  ++ A+ +     +      K+       + G
Sbjct: 309 LSKKITKYYVYAIEIKLDGGMNEDGAKSSLERAKLAIESGQEFTKVALKYNQDYDHPN-G 367

Query: 233 KAQYLLESDLHP-----QFQNLLKKSQNNTTNPYVTQK-GVEYIAICDKRDLGGEIALKA 286
             +++ E D  P      F  L +  +N  + P+         I     ++      LK 
Sbjct: 368 NFRWVSELDSPPSLPPAAFAQLKQLKENELSEPFQADGRTWMIIKYTKTKEYDAAEQLKE 427

Query: 287 Y-LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                     K ++    ++  ++ +A I  
Sbjct: 428 QKALEAIFSEKAQEIYKTWLTSMKDDAYIEI 458


>gi|93006476|ref|YP_580913.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter
           cryohalolentis K5]
 gi|92394154|gb|ABE75429.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter
           cryohalolentis K5]
          Length = 624

 Score = 67.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/397 (11%), Positives = 101/397 (25%), Gaps = 86/397 (21%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
             K+   L  +   +     L    ++ + SY    +       +    I   +    + 
Sbjct: 1   MDKLRDFLKSWPGRILLILCLSPLALLGVESYFGGNVDPNQIAQVGEASIGLSEYQTAVN 60

Query: 62  LLK----------LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
             +                 L +  ++ LI  TL +Q+  K G+T   +T+N    Q   
Sbjct: 61  NRRTELLDQVDDASLLNEDVLHEQVLKGLIDRTLLEQQAGKLGMTVSDDTINRLLRQEEI 120

Query: 112 NTG----LSAEDFSSFLDKQGIGDNHFKQYLAIQ-------------------------- 141
             G     S + F+SFL ++ +  N        Q                          
Sbjct: 121 FKGADGEFSNDQFASFLRQRNMTKNQLFDEFRNQLSLDQLNASIVGTAAYPMKAVSQLIN 180

Query: 142 -------SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                           D++ K    + +I A     K+      ++      +    +Q 
Sbjct: 181 LQLEARNIWLHRFNWQDYVSKVKLSKNDIQAYYDANKDTLKSAAMVDLAYLQLSPQTIQV 240

Query: 195 QG---------------------------------FVQKRIKDAEESRLRLPKDCNKLEK 221
                                                + R    +    +        + 
Sbjct: 241 NEVTKEDLQQQYEAYKQSLAVVDERKISQILLTGSDAKARADKIKARLAKGEAFAKVAKA 300

Query: 222 FASKIHDVSIGKAQYLLE----SDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICD--K 275
            +      + G           +D     + L   S  + + P  T  G +   + +   
Sbjct: 301 ESDDPSGETGGDIGRFNPSVFGNDAAAVEKALEGLSVGDISVPVKTSFGYQIFTVTEDNG 360

Query: 276 RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             +    +++  L A+    K ++  A+ V  +   A
Sbjct: 361 NKIPSLESMRDDLIAKAKEYKRQEIYADKVTAINDLA 397


>gi|332521072|ref|ZP_08397530.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lacinutrix algicola
           5H-3-7-4]
 gi|332043165|gb|EGI79362.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lacinutrix algicola
           5H-3-7-4]
          Length = 676

 Score = 67.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/259 (12%), Positives = 74/259 (28%), Gaps = 5/259 (1%)

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             L   K+   L + A   L  E      + K             + +  +      ++ 
Sbjct: 137 NYLNDSKVTDALVEEAYARLANEIKASHILVKIDQDASPKDTLAAYNEILKLRERVVQEG 196

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
              +                      +V       Y     +I    +      V +   
Sbjct: 197 YKKVQSDVHNGKTIFAEDLGYFSAFKMVYPFENAAYNTKVNDISMPFKTRFGYHVVKVFD 256

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLE 239
           +                 +++IK+  +   +  +     ++F+         G+ +    
Sbjct: 257 KRKSQGEITVAHIMIENDEEKIKEIYKRLEQGEQFQALAKQFSEDKSSSSKGGELKPFSG 316

Query: 240 SDLH-PQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK 296
             L  P+F+ +    K+  + + P+ TQ G   + + +K+ L     +KA L  +     
Sbjct: 317 GQLSSPEFEAVAFAIKNPGDYSKPFKTQFGWHIVKLINKKPLPDFKEIKAELINKIRRDS 376

Query: 297 IEKHEAE-YVKKLRSNAII 314
             K   +  VK L+    I
Sbjct: 377 RSKVINDSRVKALKEKYKI 395


>gi|128298|sp|P14890|NIFM_AZOVI RecName: Full=Protein nifM
 gi|142367|gb|AAA64732.1| nifM protein [Azotobacter vinelandii]
          Length = 292

 Score = 67.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/249 (10%), Positives = 70/249 (28%), Gaps = 8/249 (3%)

Query: 63  LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
           L   ++      I  Q  I + + +     +       +       H  +   S E    
Sbjct: 30  LSEDQLQQADRIIGRQRHIEDAVLR--SPDAIGVVIPPSQLEEAWAHIASRYESPEALQQ 87

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV-REYLIR 181
            LD Q +     +  LA +     V+           + ++                   
Sbjct: 88  ALDAQALDAAGMRAMLARELRVEAVLDCVCAGLPEISDTDVSLYYFNHAEQFKVPAQHKA 147

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP--KDCNKLEKFASKIHDVSIGKAQYLLE 239
            +L +I ++  +N     +   +    RLR    +   +  K +     +  G    ++ 
Sbjct: 148 HILVTINEDFPENTREAARTRIETILKRLRGKPERFAEQAMKHSECPTAMQGGLLGEVVP 207

Query: 240 SDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTK 296
             L+P+      + ++   +    +  G   +               +   L  +    +
Sbjct: 208 GTLYPELDACLFQMARGELSPVLESPIGFHVLYCESVSPARQLTLEEILPRLRDRLQLRQ 267

Query: 297 IEKHEAEYV 305
            + ++ +++
Sbjct: 268 RKAYQRKWL 276


>gi|303257878|ref|ZP_07343887.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderiales
           bacterium 1_1_47]
 gi|302859221|gb|EFL82303.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderiales
           bacterium 1_1_47]
          Length = 645

 Score = 67.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/247 (9%), Positives = 68/247 (27%), Gaps = 16/247 (6%)

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH------ARNTGLSAEDFSSFLDK 126
             +    L+    +   + K  +   ++ +    V        +                
Sbjct: 159 RDLVQDMLVNSVAQTTFVPKKTVALLNDILRETRVVRTMSFDPSSYMKDVKVSEEQIKKY 218

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
                + ++   ++   +  +      +     E E+    ++ +     E   R     
Sbjct: 219 YDEHKDDYRAPESLNIQFVVMSPETVKMTAEPSEQELKDFYEQNRKKYEVEESRRAAHIL 278

Query: 187 IPDNKLQ------NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
           I  +  +      +Q    K  K   E +    K     ++ ++      S G   +  +
Sbjct: 279 IAPDANEADKAKADQDAKAKAEKILAEVKADPSKFAQLAKENSADPGTAESGGDLDFFTQ 338

Query: 240 SDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTK 296
             + P+F + +    ++    P  T+ G   I + D           +++ +        
Sbjct: 339 GQMVPEFDKAVFGAKKDEIVGPVKTEFGYHIIHVTDINPAHVRPFEEVRSEILKFWQDQH 398

Query: 297 IEKHEAE 303
            +   AE
Sbjct: 399 RQSMFAE 405



 Score = 47.0 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/320 (8%), Positives = 85/320 (26%), Gaps = 33/320 (10%)

Query: 1   MTSKVFTSL---SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDIS 57
           M   +F S      ++ L+    ++  F  + I  Y      +     ++G+ I   +  
Sbjct: 1   MRIIMFQSFRNQKRWLMLIAMILIIPAFVFIGINGYSRLNPDANAIAKVDGKGIQPEEFD 60

Query: 58  KRIALLKLQKIN-------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
            +      +                 E     +Q +      + ++    +         
Sbjct: 61  YQKREYIERMRQQEGGAVDPSIFETQEANAAILQNIATRRALQAQMAHHYMNVSEADAIN 120

Query: 105 FFVQ---HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
                    ++   S E + ++L  +G  D  F   L    +   +V +  + +   +  
Sbjct: 121 VIKNADAFKKDGQFSPELYENYLAARGKSDQQFVYELRRDLVQDMLVNS--VAQTTFVPK 178

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           +  A    +   T     +     S   +   ++  ++K   + ++          +   
Sbjct: 179 KTVALLNDILRETRVVRTMSFDPSSYMKDVKVSEEQIKKYYDEHKDDYRAPESLNIQFVV 238

Query: 222 FASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIA---ICDKRDL 278
            + +   ++         ++   Q      +          +++    +      +    
Sbjct: 239 MSPETVKMT---------AEPSEQELKDFYEQNRKKYEVEESRRAAHILIAPDANEADKA 289

Query: 279 GGEIALKAYLSAQNTPTKIE 298
             +   KA         K +
Sbjct: 290 KADQDAKAKAEKILAEVKAD 309


>gi|239616790|ref|YP_002940112.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kosmotoga olearia
           TBF 19.5.1]
 gi|239505621|gb|ACR79108.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kosmotoga olearia
           TBF 19.5.1]
          Length = 673

 Score = 67.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/244 (10%), Positives = 74/244 (30%), Gaps = 11/244 (4%)

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
           ++  + + +LI + +     +K  I    + +N    +       S E++ + +++    
Sbjct: 111 DVRYMVLLDLIDQKILIYYAKKHNIYPTEDEINTRVEEIVSKY-TSDENYKAQIEQYYGS 169

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
              FK+ +        + +        +++ ++    ++ K+    +Y        +  +
Sbjct: 170 VEAFKEKVRKSIFPSVLKEKVQNDVLKDVDQKLKTYFEENKDEIKNKYERVEASHILLTS 229

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNL 249
           +               E         +   +F+      V  G         +  +F++ 
Sbjct: 230 EASALELK-------NELLNGAINFSDAASEFSIDRNSAVLGGSLGSFGHGQMVKEFEDA 282

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK-AYLSAQNTPTKIEKHEAEYVKK 307
               +      P  T+ G   I +  K        LK +    Q           ++ + 
Sbjct: 283 AFSATPGEIVGPVETKYGFHLIKVATKTVFDTFDELKSSSAYDQFKNDYESDEFKKWFEN 342

Query: 308 LRSN 311
            ++N
Sbjct: 343 YKNN 346


>gi|307729660|ref|YP_003906884.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1003]
 gi|307584195|gb|ADN57593.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1003]
          Length = 646

 Score = 67.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/263 (10%), Positives = 68/263 (25%), Gaps = 17/263 (6%)

Query: 52  TDGDISKRIAL-LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           T     +R+   +  Q++   ++  A      +TL +   E +    +   + +    +A
Sbjct: 149 TPDQYDERVRYSIATQELPASIQGSAFTS---KTLAQHLTELAEQQREVQGIAFHPRDYA 205

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                +     ++ D                 +                E ++     + 
Sbjct: 206 AKIQPTDAQLQAYYDAHRNDFATPATATIQYLVMSP---ATLAASVQPSEADLKKYYDEN 262

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH--- 227
                 E  +R     I   K  +     K  + AEE   ++    ++  + A +     
Sbjct: 263 IAHYRTEGQVRASHILIAAPKDASAADKAKAKQKAEELLAQIKAHPDQFAQIAQQNSQDP 322

Query: 228 --DVSIGKAQYLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL--GG 280
                 G   Y     +         +    ++  +    T  G   I   D +      
Sbjct: 323 GSASKGGDLGYFGRGMIAGGQAFDDAVFALKKDEVSGIVQTDFGYHIIKATDVKPAVTRP 382

Query: 281 EIALKAYLSAQNTPTKIEKHEAE 303
              +K  ++         K  ++
Sbjct: 383 FDEVKEQIARDLKTQLASKAFSD 405



 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/228 (8%), Positives = 57/228 (25%), Gaps = 15/228 (6%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN 69
              +  +    ++     V I  ++ +   S    ++NG  IT  +    +     +   
Sbjct: 9   KRLMMFMLILVIVPGLGFVGIQGFRGFFDESANVASVNGHKITRVEYDNAMRQQLDRARQ 68

Query: 70  -------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQHARNTG 114
                         E     +  LI + +   E ++  +T   + V           +  
Sbjct: 69  MLGAQFDIKAFDTPERRSQMLDGLIEQRVLADETQRLHLTASDDAVRRVLLNDPVISSLK 128

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
                      KQ +           + +   +   +                Q +  + 
Sbjct: 129 KPDGSIDVERYKQLLAMQGMTPDQYDERVRYSIATQELPASIQGSAFTSKTLAQHLTELA 188

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            ++  ++ + F   D   + Q    +     +  R           ++
Sbjct: 189 EQQREVQGIAFHPRDYAAKIQPTDAQLQAYYDAHRNDFATPATATIQY 236


>gi|242237960|ref|YP_002986141.1| nitrogen fixation protein NifM [Dickeya dadantii Ech703]
 gi|242130017|gb|ACS84319.1| nitrogen fixation protein NifM [Dickeya dadantii Ech703]
          Length = 279

 Score = 67.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/243 (6%), Positives = 59/243 (24%), Gaps = 9/243 (3%)

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             + +    ++L  +   +Q + ++ +       +       +             +++ 
Sbjct: 28  PPQHQDDFQRQLARQCRLEQAVVEAALCQSLTVTDDVLQLIEQQLAEPLAQAGFAPEERQ 87

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
               H         +   +            +      +Q        E  +   L    
Sbjct: 88  AVIRHHA------LMELQLTWVAAQAAAPTGQDVALWYRQHADRFLRPEQRLTHHLLLTA 141

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
           +++        +             +      +++     +  G   ++    L  + + 
Sbjct: 142 EDERTAALVRAQIRGFHRTLCREPAQFERLARRYSHCPSALEGGLLGWVSRGLLFSELEQ 201

Query: 249 L-LKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYV 305
                 +   + P  T+ G   +     R      E      +S      +  + + +++
Sbjct: 202 SLFMLREGQVSEPVETEIGWHLLWCEAIRPEAPLPESEALPKVSDYLLRQRQRQQQRQWL 261

Query: 306 KKL 308
             L
Sbjct: 262 ATL 264


>gi|260437280|ref|ZP_05791096.1| foldase protein PrsA [Butyrivibrio crossotus DSM 2876]
 gi|292810590|gb|EFF69795.1| foldase protein PrsA [Butyrivibrio crossotus DSM 2876]
          Length = 239

 Score = 67.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/273 (11%), Positives = 70/273 (25%), Gaps = 46/273 (16%)

Query: 46  INGEVITDGDISKRIALLKLQKIN----GELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           I    ITD +I + IA L  ++                L  E        +     D+  
Sbjct: 3   IGNYNITDKEIDQYIATLAPEQQMYKDVPAFRDQVKSRL-EEISLFAMEGEEKHLDDTEE 61

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
                    R+                              +   +   + +      + 
Sbjct: 62  YKNTLSVVRRD------------------------------VLGQLAMAEIINDVDVTDE 91

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           E+    +  K    R   +      +      N+   +                 +  ++
Sbjct: 92  EVKDYYENHKEQFGRAASVSASHILVDSEDRCNEIKSE--------IENGGKSFEDAAKE 143

Query: 222 FASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG- 279
           +++     S G      +  +  +F++       N    P  T+ G   I + ++ D   
Sbjct: 144 YSTCPSGKSGGSLGTFGKGQMVKEFEDASFNGELNKILGPVKTKFGYHLIRVDEREDASV 203

Query: 280 -GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
                +   + A     K +K   E V +LR+ 
Sbjct: 204 MPFEQVADKVKAAAKRAKQQKVYDENVARLRAK 236


>gi|254469068|ref|ZP_05082474.1| foldase protein PrsA, putative [beta proteobacterium KB13]
 gi|207087878|gb|EDZ65161.1| foldase protein PrsA, putative [beta proteobacterium KB13]
          Length = 257

 Score = 67.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 58/177 (32%), Gaps = 15/177 (8%)

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
           ++  + + +K        + E    A K   K    +EY  + +L    +      G ++
Sbjct: 92  MEMAYTEYLKKYIKEHPISNEDIDLAYKNFTKQFNEQEYKGQHILVKTKNEAESLIGKIE 151

Query: 200 KRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNT 257
                         +     + F+  K      G   +    D+   F N +K    N  
Sbjct: 152 -----------NGNEFSELAKNFSIDKASAEKGGDLDWFRLEDMVESFANEIKNLQINEL 200

Query: 258 TNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           +  + TQ G     + DK+ L         +  +      ++    ++K+L+ NA I
Sbjct: 201 SGAFQTQFGWHVFKLTDKKPLTPPELS--EIKKRLEDDLKKRKLKNHIKELKQNAEI 255


>gi|110834075|ref|YP_692934.1| peptidyl-prolyl isomerase [Alcanivorax borkumensis SK2]
 gi|110647186|emb|CAL16662.1| peptidylprolyl isomerase [Alcanivorax borkumensis SK2]
          Length = 643

 Score = 67.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/274 (11%), Positives = 81/274 (29%), Gaps = 16/274 (5%)

Query: 53  DGDISKRIALLKLQKINGELEKIAVQE------LIVETLKKQEIEKSGITFDSNTVNYFF 106
             +   R   +  Q     L +  ++E      +  +     E+ +     + +    + 
Sbjct: 133 RFERELRARGMNPQTYVQGLRQDMLKEQFRAGFMQTDFSLPLELNEQRRLGEQSRDIRYV 192

Query: 107 VQHARN-TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
                +                      F +    +  + ++  + +  +    + E+ A
Sbjct: 193 QLDIDSLRKQFTVSDEDVKAFYDDNQGEFMRPEEFKVSYVELSADKYTDQVSVTDEEVEA 252

Query: 166 NKQKMKNITVR----EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
                K+I       +         I  N  ++    + R ++A ++        +   +
Sbjct: 253 EYDVRKSIMEEAGAGDARRHVSHILIELNDDRDLDQAKARAREAAKAIADGASFADVAAQ 312

Query: 222 FASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL- 278
           ++  +    S G+   + +  L  + +  + + S    + P VT  GV  I +  +    
Sbjct: 313 YSDDLGSAQSGGELGVVSKGALPEEMETAIAELSPGTVSAPVVTDAGVHLIFVTQEDTAT 372

Query: 279 --GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
                  L   + A  T  + E    E V KL  
Sbjct: 373 ALPSLADLSDQIRADLTKARAESLLNEDVSKLEE 406



 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 75/239 (31%), Gaps = 17/239 (7%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI- 60
             +    +   +  +    +++ F I     Y     +  +   + G  IT G +++R+ 
Sbjct: 1   MQEFRRFVRGPVGKVLLAAIILPFVISGFYGYFVGGSTGDVVAEVEGSKITRGVVNQRVE 60

Query: 61  ---ALLKLQKINGELE--------KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ- 108
               +L+ Q  N            ++ +  ++ E L     E+S + F    V     + 
Sbjct: 61  RVRNMLREQSPNMNPALLDSFVRPEMVLDGIVNEQLILSAAEQSNMVFSEKQVAADIYKV 120

Query: 109 --HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
                +   S + F   L  +G+    + Q L    +            +          
Sbjct: 121 PLFQVDGKFSEQRFERELRARGMNPQTYVQGLRQDMLKEQFRAGFMQTDFSLPLE--LNE 178

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
           ++++   +     ++  + S+      +   V+    D +   +R  +      + ++ 
Sbjct: 179 QRRLGEQSRDIRYVQLDIDSLRKQFTVSDEDVKAFYDDNQGEFMRPEEFKVSYVELSAD 237


>gi|115360451|ref|YP_777588.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria AMMD]
 gi|115285779|gb|ABI91254.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria AMMD]
          Length = 262

 Score = 67.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/181 (10%), Positives = 51/181 (28%), Gaps = 5/181 (2%)

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
             +    +++ +          +      +      R  ++                 ++
Sbjct: 69  DDATVDALLECELTHVPEPDRADCERYYAQHPARFRRNDIVYASHVLFAVTDRVPLAPLR 128

Query: 200 KRIKDAEESRLRLPKDCNK-LEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ--NN 256
           +R + A    +  P        + ++       G    LL  D  P+F+  L  +     
Sbjct: 129 QRAERALADVVAAPDTFEAVARESSNCPSAQVGGSLGQLLRGDTVPEFEAALFDTDGLGV 188

Query: 257 TTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                 T+ G   + I  +    +         ++A  +    ++   +YV  L + A +
Sbjct: 189 LPKLVDTRFGFHIVRIERRIPGDVVPFDEAAGQIAAYLSERVRQRAMRQYVAILAAGARV 248

Query: 315 H 315
            
Sbjct: 249 E 249


>gi|294672824|ref|YP_003573440.1| peptidylprolyl isomerase domain-containing protein [Prevotella
           ruminicola 23]
 gi|294472529|gb|ADE81918.1| peptidylprolyl isomerase domain protein [Prevotella ruminicola 23]
          Length = 477

 Score = 67.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/299 (10%), Positives = 80/299 (26%), Gaps = 38/299 (12%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +               +  +  T+ G  ++  +                  + 
Sbjct: 1   MRQLTIALSLFAAITSQQTLAQTTDPVVMTVAGVPVSRSEFEYSYN--------KNNGEG 52

Query: 76  AVQEL-IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
            + +L + E +      K  +    +          +   +  +                
Sbjct: 53  VIDKLSVDEYVTLFINYKLKVAAALDAKLDTLSSFRQEYQMYRDQ--------------- 97

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                 Q     V   + + +   +     A                 +L       +Q 
Sbjct: 98  ------QVRPTMVTDAEVLDQARQMYERTQAM----IGSKGLVRPAHILLKLSTQATVQQ 147

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK- 252
           Q  + +RI     +           +K +      V  G+  ++  S    +F+++    
Sbjct: 148 QEKIHQRIDSVYRALQAGADFAELAKKVSEDTGSAVRGGELPWIAPSQTLKEFEDVAYSL 207

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           +    + P+++  G   I + +++ L    +LK  + A      I    A+   KLR+ 
Sbjct: 208 APGQLSQPFLSPVGYHIILMKERKQLEPFDSLKQSIVASLERHGIRNEIADM--KLRNR 264


>gi|261380152|ref|ZP_05984725.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria subflava
           NJ9703]
 gi|284796990|gb|EFC52337.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria subflava
           NJ9703]
          Length = 617

 Score = 67.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/265 (10%), Positives = 65/265 (24%), Gaps = 11/265 (4%)

Query: 57  SKRIALLKLQKINGELEKIAVQ-ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
            + +  ++ Q     L  +     L+ +   +Q I  +  T    +  +     A    +
Sbjct: 132 DQFVEDIREQFQLQNLLNLVQNGALVSDAQARQLINLTQATRTIRSFTFSPEAFAAQVKV 191

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
                  + +         +               D   K      E+            
Sbjct: 192 DDAALQKYYEAHKKDYLIPQAVKLEYVALNI---KDLADKQTVSAEEVQKAYDSKSVDLS 248

Query: 176 REYLIRTVLFSIPDNKLQ--NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS-IG 232
               I  +   +  N  +  N     +  K A E +           K++  +   +  G
Sbjct: 249 PRAEIAHIFIPVMPNGDEASNAEIKAEVDKMAAELKEHPDSFAELAAKYSKDLSSSNKGG 308

Query: 233 KAQYLLES----DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
              YL +           +      +   ++   +  G   I + +          KA +
Sbjct: 309 NLGYLSKGGGSGFGPEFDKAAFALGKGEVSDTVKSSLGYHVIKVLNVEAEPTLEQAKARI 368

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNAI 313
            A     K         +KL  +A 
Sbjct: 369 EAALKLKKAASAFNAAKEKLGEDAF 393


>gi|110082627|dbj|BAE97397.1| probable peptidyl-prolyl cis-trans isomerase [Halomonas
           halodenitrificans]
          Length = 273

 Score = 67.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/240 (7%), Positives = 67/240 (27%), Gaps = 5/240 (2%)

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           + E +  +      + +            A    +  E         G+ +         
Sbjct: 20  VGEAIIAEADIAQEMQYHPADSAGTAQLKAARALVVRELLRQRAADLGLAEASGADLDED 79

Query: 141 QSIWPDVVKNDFM-LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
            ++   +++ +    +    +          +        +R +L +   +  + +    
Sbjct: 80  DAVIAVLLEQELNVPEPSEEDCRRFHATHAERFSEPTRLRVRHILLAAAPDDAEARDAGY 139

Query: 200 KRIKDAEESRLRLPKDCNKLEK-FASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +  +   +  +  P+   +  +  ++       G+  +L       +    L+       
Sbjct: 140 RLGEKLVKQLVEHPERFTEFAQRHSACPSKEEGGELGWLAPGQTVAELDGALQHLNEGLH 199

Query: 259 N-PYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           + P  ++ G   I+I  +++        +  ++          +    Y+  L+S   + 
Sbjct: 200 DRPLASRYGWHVISIDARQEGRERPYEEVAEHVRHSLREQSTRRALRHYLMALQSEIGVE 259


>gi|328675683|gb|AEB28358.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
           isomerase SurA) [Francisella cf. novicida 3523]
          Length = 469

 Score = 67.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/309 (14%), Positives = 121/309 (39%), Gaps = 23/309 (7%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-------ELEKIAVQEL 80
           V +       + ++    +N + IT  ++ + +A L+  + N        +L++ A+Q+L
Sbjct: 40  VSMNVSDKKYLVNKTVAIVNSKPITSFELDQEVAKLEAMQPNSTFNADPLQLKRQALQDL 99

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I +++  Q  E++ IT  +  ++      A   G+S E     ++  G+  + +K+ +  
Sbjct: 100 ISQSVLLQLAERNNITISNQQLDSAIQDIAAKNGVSVESLKLNIEAAGMSFDSYKKRIRD 159

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV------REYLIRTVLFSIPDNKLQN 194
           Q +   + +     +      EI    +K +          + Y ++ ++ ++PD+K   
Sbjct: 160 QLMISQLQQQAIAQQVYVSPEEIQKYIKKHQKQFDREMAPVKLYTLKNLIIALPDSKKAR 219

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKK 252
           Q  +    K A             +++F+   + VS G     ++ D  P    + + + 
Sbjct: 220 QKKIDLFKKLALVVNDSNIDFSEIVKQFSQAPNAVSGGIVSQQVKFDSIPDIYKKYIKEL 279

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY------LSAQNTPTKIEKHEAEYVK 306
             +  + P++    ++ I I +  +    ++ K        +  +   +  E+     ++
Sbjct: 280 KNHQVSQPFIVNHTLQMIYIDNIDEKAPILSKKVTKYYVYAIEIKLDGSMTEEGAKSSLE 339

Query: 307 KLRSNAIIH 315
             R+   I 
Sbjct: 340 --RAKLAIE 346



 Score = 50.8 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/271 (10%), Positives = 78/271 (28%), Gaps = 9/271 (3%)

Query: 53  DGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
                + +A +KL  +   +  +   +   +       + + +  DSN      V+    
Sbjct: 190 QKQFDREMAPVKLYTLKNLIIALPDSKKARQKKIDLFKKLALVVNDSNIDFSEIVKQFSQ 249

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
              +          +        +    +      V   F++ +    + I    +K   
Sbjct: 250 APNAVSGGIVSQQVKFDSIPDIYKKYIKELKNHQ-VSQPFIVNHTLQMIYIDNIDEKAPI 308

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
           ++ +          I  +    +   +  ++ A+ +     +      K+       + G
Sbjct: 309 LSKKVTKYYVYAIEIKLDGSMTEEGAKSSLERAKLAIESGQQFTKVAMKYNQDYDHPN-G 367

Query: 233 KAQYLLESDLHP-----QFQNLLKKSQNNTTNPYVTQK-GVEYIAICDKRDLGGEIALKA 286
             +++ E D  P      F  L +  +N  + P+         I     ++      LK 
Sbjct: 368 NFRWVSELDSPPSLPPAAFAQLKQLKENELSEPFQADGRTWMIIKYTKTKEYDAAEQLKE 427

Query: 287 Y-LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                     K ++    ++  ++ +A I  
Sbjct: 428 QKALEAIFSEKAQEIYKTWLTSMKDDAYIEI 458


>gi|291613281|ref|YP_003523438.1| nitrogen fixation protein NifM [Sideroxydans lithotrophicus ES-1]
 gi|291583393|gb|ADE11051.1| nitrogen fixation protein NifM [Sideroxydans lithotrophicus ES-1]
          Length = 282

 Score = 67.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 73/249 (29%), Gaps = 8/249 (3%)

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
             ++ IA Q+  +ET      E   +     TV     +       + EDFS  L + G+
Sbjct: 34  ERVQSIAQQQHQLETRVLAAPEARDVMVPPATVEAAMQEIRGRY-PNEEDFSGDLARNGL 92

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
            +  F   L  +     +++       G  EM++    Q       R          I  
Sbjct: 93  EEASFAAALERELKVDAIMEKVGTRAEGVSEMDVDLYYQYHPEQFRRPETRLARHILITI 152

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPK----DCNKLEKFASKIHDVSIGKAQYLLESDL-HP 244
           N+   +    +  K     + RL K       +  K +     +  GK   L    L   
Sbjct: 153 NESIAENTRAEAGKRIAVIQARLAKEPQRFEEQALKHSECPTALDGGKLGDLPRGKLFPE 212

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG--EIALKAYLSAQNTPTKIEKHEA 302
             + L +      +    ++ G   +      +         K ++       +    + 
Sbjct: 213 LDKALFELKAGEVSGVLESELGFHVLRCDAITEANVLGYDQAKQHIRKLLEQKRKRVCQQ 272

Query: 303 EYVKKLRSN 311
            +VK L   
Sbjct: 273 AWVKGLVDR 281


>gi|78776347|ref|YP_392662.1| hypothetical protein Suden_0146 [Sulfurimonas denitrificans DSM
           1251]
 gi|78496887|gb|ABB43427.1| hypothetical protein Suden_0146 [Sulfurimonas denitrificans DSM
           1251]
          Length = 278

 Score = 67.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 99/297 (33%), Gaps = 31/297 (10%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVE 83
           I  ++ + +  S  M + I   + GE IT  DI   + L K+          A   LI +
Sbjct: 4   IILVLFLGTMLSAEMINGISVVVKGEAITIYDIKDEMRLSKVNATT------ATDILIRK 57

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF-LDKQGIGDNHFKQYLAIQS 142
            L+  EI++  IT DS+ V     + A +  +S ++F     D  G+    FK+    + 
Sbjct: 58  KLEAAEIQERKITVDSSEVYDDIKKVAASNKMSIDEFYDAVRDSNGLTSAEFKEKTREKI 117

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           +   +            + +      ++           +V+     N+   +  +   +
Sbjct: 118 LSQKLYSAIAYSSINMPDEDEMREYYELHKDEFSRPKAFSVIIYSSQNEEALRKKITTPM 177

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYV 262
             ++E +                          Y   S      + L    Q + T   +
Sbjct: 178 FVSDEIKAEERV-------------------LGYDKIS--PELAKMLESTQQKSFTPVIM 216

Query: 263 TQKGVEY-IAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            QKG      + + +         ++  LS      K E+  ++Y  +LR NA I  
Sbjct: 217 DQKGSHMSFYLVESKMPQSSSYEDVQNQLSNAIMGQKREQVLSDYFARLRGNADIQI 273


>gi|146284004|ref|YP_001174157.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas stutzeri
           A1501]
 gi|145572209|gb|ABP81315.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas stutzeri
           A1501]
          Length = 392

 Score = 67.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/239 (7%), Positives = 61/239 (25%), Gaps = 4/239 (1%)

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I E L             +          A    +  E      +  G+     +     
Sbjct: 140 IAERLGISVNTVIAQLAKARQGWSARNFQAARALVVRELLRQRAEALGLSLLDAEGREDD 199

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           +++   + +   + +  +          + +        +R +L     +  + +    +
Sbjct: 200 RTLASLLERELQVPEPDDAACRRFFEHHRERFAEPLLLRVRHILLPAAPDDARARDAQYR 259

Query: 201 RIKDAEESRLRLPKDCNK-LEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN 259
             +         P    +  ++ ++       G   +L      P+    L+        
Sbjct: 260 LGQKLLRQLQAAPARFTELAQRHSACPSKEDGGALGWLAPGQTVPELDRALRHLAIGLHE 319

Query: 260 -PYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            P  ++ G   +++ ++R+        +   +          +    Y+  L     + 
Sbjct: 320 RPLASRYGWHLVSVDERREERPLPYEQVAERVRHSLREQATRRALRHYLLALEEEIGVE 378


>gi|219849264|ref|YP_002463697.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus
           aggregans DSM 9485]
 gi|219543523|gb|ACL25261.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus
           aggregans DSM 9485]
          Length = 515

 Score = 67.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 13/199 (6%), Positives = 41/199 (20%), Gaps = 28/199 (14%)

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
               +     ++           +      ++        +        R +L ++    
Sbjct: 267 PELSKEEFRMALMEQYRDRLLNERIQ---AQLVPEDGFTYSTEPERVTARQILIAVKPPA 323

Query: 192 LQNQGFVQKRI-------KDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL- 242
                 ++          ++                + +       + G       +   
Sbjct: 324 EATPEQIEAAFAAALPTAQELVTQLRNGADFAALAAERSDDPGSRDNGGDIGSFDRNGFA 383

Query: 243 -------HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT 295
                              N  ++P  TQ G   + + ++                    
Sbjct: 384 DNGATYPPELVAAAFALPVNQISDPVRTQFGWHILEVTNRIVPSEADQ---------LQK 434

Query: 296 KIEKHEAEYVKKLRSNAII 314
              K   E++ + R+ A I
Sbjct: 435 ARTKALDEWIAEQRAKADI 453


>gi|238026979|ref|YP_002911210.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia glumae BGR1]
 gi|237876173|gb|ACR28506.1| Peptidyl-prolyl cis-trans isomerase D [Burkholderia glumae BGR1]
          Length = 647

 Score = 67.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/257 (7%), Positives = 49/257 (19%), Gaps = 11/257 (4%)

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            +    ++ Q    +L    +          + +                          
Sbjct: 151 DQYQESIRYQLTQQQLPSNLIDSAFTPKSVARSLTDLAQQQREIQALVLKPADYAAKVQP 210

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            +   S             +   IQ +                E +I             
Sbjct: 211 TDAQISAYYDAHKQAFATPETATIQYLVFTPATAA-ASATPPTEADIRKYYDDNTARYRT 269

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-----SKIHDVSI 231
           E  +R     I   +  +          A+     +    ++  + A             
Sbjct: 270 EAQVRVSHIFIAAARGASAADKAAARAKADRLLADVKAHPDQFAQIAEKNSQDAPSAAKG 329

Query: 232 GKAQYLLESDLHPQFQNLLKK---SQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKA 286
           G   Y+                       +    +  G   +   D +         +K 
Sbjct: 330 GDLGYITRGSTAGGAAFDDAAFALKPGEISKVVESDLGFHILKATDVKPAIVKPFDEVKE 389

Query: 287 YLSAQNTPTKIEKHEAE 303
            ++A+       K  ++
Sbjct: 390 SIAAELKQQYAAKAFSD 406



 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/155 (11%), Positives = 45/155 (29%), Gaps = 20/155 (12%)

Query: 26  CIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN-------------GEL 72
             V +  ++ +   S    +++G  IT  +          Q                 E 
Sbjct: 25  AFVGVQGFRDFFDDSANVASVDGRKITRAEFDSAYRQQIDQARQALGARYDAKVIDTPER 84

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF-------VQHARNTGLSAEDFSSFLD 125
            +  +  +I +     E+ +  +T     V                +  + AE ++  L 
Sbjct: 85  RQQLLDGMIEQRALADEVRRLHLTASDAAVREALLSNPIVAAMRKPDGSIDAERYTQLLA 144

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
            QG+  + +++ +  Q     +  N     +    
Sbjct: 145 MQGMTPDQYQESIRYQLTQQQLPSNLIDSAFTPKS 179


>gi|222094778|ref|YP_002528838.1| peptidylprolyl isomerase [Bacillus cereus Q1]
 gi|221238836|gb|ACM11546.1| protein export protein prsa [Bacillus cereus Q1]
          Length = 286

 Score = 67.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/305 (11%), Positives = 88/305 (28%), Gaps = 45/305 (14%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + +    V  +S    + S +I T+  G+ IT  +  +++        N    K 
Sbjct: 1   MKKAMLALAATSVIALSACGTSSSDKIVTSKAGD-ITKEEFYEQMK-------NSPTGKQ 52

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +++E +  +  +      D                   + F + L + G+ +   K
Sbjct: 53  TLNNMVLEKVLIKNYKVEDKDVDKKYD--------EMKKQIGDQFDTLLKQPGVTEKTLK 104

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +  Q      V+     K      +       +                         
Sbjct: 105 NSVRAQLAQEKAVEQAITDKEVKDYYKPEIKASHILVKD--------------------- 143

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-S 253
              +   K  +E   +        ++++         G   +     +  +F++   K  
Sbjct: 144 ---EATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGPGKMVKEFEDAAYKLK 200

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
           ++  + P  +Q G   I + D ++        KA L  +    K +  +   + + K   
Sbjct: 201 KDEVSEPVKSQFGYHIIKVTDIKEPEKSFEQSKADLKKELVEKKKQDGEFMNDLMIKEIK 260

Query: 311 NAIIH 315
            A + 
Sbjct: 261 KADVK 265


>gi|167950936|ref|ZP_02538010.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 331

 Score = 67.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/241 (8%), Positives = 62/241 (25%), Gaps = 12/241 (4%)

Query: 56  ISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
             +R+    L +   +  + +V     +   ++ I     T D+            +  +
Sbjct: 72  FEQRVRQALLSEQLSQAVQNSVFA--TQREIEELIRLRNQTRDAAYFTLPVADFLSDEEI 129

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
             +   S+           +Q      +   +            E  +    +       
Sbjct: 130 PIDLVESYYQSHQNEFLAPEQVKIEYLL---LSAEAIAPTLDVQEEALRGYYEAHLESYG 186

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKI-HDVSI 231
           R    R     +   +  ++  V    +     R R        +  +  +       + 
Sbjct: 187 RPEQRRASHILVQVAQDADEATVAAAKEKIASLRQRVEAGEAFADLAKSESQDPGSAAAG 246

Query: 232 GKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYL 288
           G   +  +  + P F++      +   +    +  G   I + + +  D+      +  +
Sbjct: 247 GDLGFFGKGIMDPAFESATFALKEGELSEAVRSSFGFHLIRLSEIKSGDVKSFEEARQEV 306

Query: 289 S 289
            
Sbjct: 307 E 307


>gi|327402945|ref|YP_004343783.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fluviicola taffensis
           DSM 16823]
 gi|327318453|gb|AEA42945.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fluviicola taffensis
           DSM 16823]
          Length = 651

 Score = 67.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/302 (8%), Positives = 76/302 (25%), Gaps = 54/302 (17%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           ++  +  + S  + A +  +   I+G+ +T  +    + +      + + +K+++ E + 
Sbjct: 5   LVLALGILFSLNTIAQTDNVVMEIDGKKVTKSEF---LQIYLKNNNDPKYDKVSLDEYMG 61

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
              K +           +T+     + A      ++ +     K         + +  + 
Sbjct: 62  LFKKFKLKVAEAEALGYDTIPKLKKELAGYRKQLSQPYLIDSTKNSALVAQAYERMKNEV 121

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
               ++                                          +  +        
Sbjct: 122 HAAHILVKVV--------------------------------------ENASPEDTLAAY 143

Query: 203 KDAEESRLRLPKDCNKL-----EKFASKIH-DVSIGKAQYLLESDLHPQFQN-LLKKSQN 255
                 + R+    +       +  +       + G   Y     +  QF+         
Sbjct: 144 NRILAIKKRIENGEDFATVAKGKNGSDDPSAARNGGDLGYFTAFQMVYQFEEAAYMTQVG 203

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             +NP  T+ G   + + D R   G +       A       +    E +   R      
Sbjct: 204 KISNPIRTKFGYHILKVIDIRPARGTMKA-----AHIMVATGKDAGQEELDDARKKVD-E 257

Query: 316 YY 317
            Y
Sbjct: 258 IY 259



 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/263 (9%), Positives = 66/263 (25%), Gaps = 8/263 (3%)

Query: 56  ISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
           +++    +K +     +    V+    E           I         F        G 
Sbjct: 110 VAQAYERMKNEVHAAHILVKVVENASPEDTLAAYNRILAIKKRIENGEDFATVAKGKNGS 169

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
                +      G        Y   ++ +   V                     ++    
Sbjct: 170 DDPSAARNGGDLGYFTAFQMVYQFEEAAYMTQV-GKISNPIRTKFGYHILKVIDIRPARG 228

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKA 234
                  ++ +  D   +     +K++ +                +F+         G+ 
Sbjct: 229 TMKAAHIMVATGKDAGQEELDDARKKVDEIYSKLQNGESFEKLAGEFSDDAQTAEKGGEL 288

Query: 235 ---QYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS 289
                   + + P+F+       +  + + P  T  G   I   +   L     LK  + 
Sbjct: 289 PLFGTGTTTRMVPEFEEAAFALTANGDISKPVQTAFGFHIIKRLELTPLRSFDELKKEIQ 348

Query: 290 AQN-TPTKIEKHEAEYVKKLRSN 311
           ++     +    +  +++KL+ +
Sbjct: 349 SKVNKDERAIVTQNSFIQKLKKS 371


>gi|107028901|ref|YP_625996.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia AU 1054]
 gi|116689941|ref|YP_835564.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia HI2424]
 gi|105898065|gb|ABF81023.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia AU 1054]
 gi|116648030|gb|ABK08671.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           cenocepacia HI2424]
          Length = 645

 Score = 67.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/271 (8%), Positives = 59/271 (21%), Gaps = 22/271 (8%)

Query: 55  DISKRIALLKLQ-KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
           D+ +   LL  Q     + ++     L ++ +    +  +                 R  
Sbjct: 135 DVERYAQLLSFQGMTPEQYQERVRYSLSLQQIPASIVSSAFTPKSLAQHLSELAAQQREV 194

Query: 114 GLSAEDFSSFLDKQGIGDNH---FKQYLAIQSIWPDVVKNDF--------MLKYGNLEME 162
                  S F  K    D     +          P+     +               E +
Sbjct: 195 QALVLKTSDFAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVYSPAAAAASAQPTEAD 254

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           I             E  +R     I      +          AE+    +    ++  + 
Sbjct: 255 IKKFYDDNPTHFRTEAQVRVSHIFIAAPGSASAADKAAAKAKAEQLLADVKAHPDQFAQI 314

Query: 223 A-----SKIHDVSIGKAQYLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAICD 274
           A             G   ++                   Q + +    +  G   +   +
Sbjct: 315 AQKSSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFSLKQGDVSGIVQSDLGFHILKATE 374

Query: 275 KRD--LGGEIALKAYLSAQNTPTKIEKHEAE 303
            +   +     +K  ++         K  ++
Sbjct: 375 VKPAVVKPFAEVKDQIAVDLKQQYASKAFSD 405



 Score = 45.4 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/211 (9%), Positives = 53/211 (25%), Gaps = 15/211 (7%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN-------------GELE 73
            V I  ++ +   S     +NG  IT  +          Q                 E  
Sbjct: 26  FVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAFRQQIDQARQALGGQFDIKMFDTPEHR 85

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV--QHARNTGLSAEDFSSFLDKQGIGD 131
           K  +  LI + +   E ++  +T   N V    +      +              Q +  
Sbjct: 86  KQVLDGLIQQRVLADETQRLHLTASDNAVRDALMSDPMIASLKKPDGTIDVERYAQLLSF 145

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                    + +   +          +      +  Q +  +  ++  ++ ++    D  
Sbjct: 146 QGMTPEQYQERVRYSLSLQQIPASIVSSAFTPKSLAQHLSELAAQQREVQALVLKTSDFA 205

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            + Q    +     +  +           ++
Sbjct: 206 AKVQPTDAQLTAYYDAHKQSFATPETATIQY 236


>gi|330809994|ref|YP_004354456.1| peptidylprolyl isomerase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378102|gb|AEA69452.1| putative Peptidylprolyl isomerase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 322

 Score = 67.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/276 (9%), Positives = 72/276 (26%), Gaps = 38/276 (13%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             ++NG  +T   +++ +           + + A   +I E L                 
Sbjct: 67  IISVNGVSVTPQAMAQELQYHPADSREDAVYQAARALVIRELL----------------- 109

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                   +               +   +   +  L  + + P   +   +         
Sbjct: 110 --------QQRIAELGLALQVGAGENEEEAATRLLLEREVLVPQCDEATCLR-------- 153

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL-PKDCNKLEK 221
                 + +  +     +R +L     +  + +     + +   E   +          K
Sbjct: 154 -YYESNRARFHSAPLLAVRHILLECAPDDAEARSLAHVQAELLLERLDQFPGSFAELALK 212

Query: 222 FASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN-PYVTQKGVEYIAICDK--RDL 278
            ++       G    + +    P+ +  L          P  ++ G   I+I  +     
Sbjct: 213 HSACPSKEQGGSLGQISKGQTVPELERQLFTLPAGLAGKPLESRYGWHVISIDQRIDGQP 272

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
               A+   +  Q      +K   +Y++ L   A I
Sbjct: 273 LPYEAVATAIRTQLQQGVWQKALVQYLQTLIGAADI 308


>gi|121608769|ref|YP_996576.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter
           eiseniae EF01-2]
 gi|121553409|gb|ABM57558.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter
           eiseniae EF01-2]
          Length = 261

 Score = 67.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 79/278 (28%), Gaps = 48/278 (17%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKIN--GELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG+ +           L+        E+EK    E+I   +  Q   + G+   ++
Sbjct: 27  IAIVNGKPVPKERADMLRQQLERSGRPVTPEIEKQINAEVIDREVLVQAALERGLEGSAD 86

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
             N                                +      +   +  +          
Sbjct: 87  YKNQ------------------------------MELAREAILINALFADFRKANPVTDA 116

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
                  + +     +EY    +L              +   K    +  +  K  +  +
Sbjct: 117 ETQAEYDKFVAANNGKEYKASHIL-----------VDKEADAKAIIAAIKKGAKFEDIAK 165

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDKRD 277
           K +         G   +   +    +F + L+K  Q   T+ P  +Q G   I + D R 
Sbjct: 166 KQSKDPGSGAKGGDLGWASPASYVSEFTEALIKLDQGKMTDAPVKSQFGWHVIRLDDMRP 225

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +         +  Q     +++ +A+Y ++LR+ A I 
Sbjct: 226 IQL--PKLEDVKPQVAQQLLQQKQAKYQEELRAKAKIE 261


>gi|118474339|ref|YP_892696.1| putative periplasmic protein [Campylobacter fetus subsp. fetus
           82-40]
 gi|118413565|gb|ABK81985.1| putative periplasmic protein [Campylobacter fetus subsp. fetus
           82-40]
          Length = 275

 Score = 67.8 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 94/296 (31%), Gaps = 29/296 (9%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           I+F  V ++        + +   +  E ITD +I + +  + +          A+  LI 
Sbjct: 4   IVFLTVFLLGILHAEYVNGLVAIVENEPITDYEIQQVMTKMNIS------PNDALSVLIR 57

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           E L+  +I   GI+ D+   +      A+  G+    F + ++ +GI    FK  +    
Sbjct: 58  ERLEDAQIRTLGISADNYEADEKIAALAQANGIDVTTFKNVIESRGISSEDFKNDIKTGI 117

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
               +          N+  E      +       ++   +V   + +N+       +  +
Sbjct: 118 KKEKLYARILNNPSQNITPENARRFYEANPKMFVQFEKISVTKYLTNNRQSLNEISKNPM 177

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYV 262
                                S    VSI       +         LL   + + T  + 
Sbjct: 178 ---------------------SVQPGVSIENVVLESKELNPQLRYILLNTKKGSFTPIFQ 216

Query: 263 TQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           T  G E   +  K         +++  + A     + E   A+Y  KLR  A I  
Sbjct: 217 TADGFEIFYVYSKEGSYLPDFNSIEKEVVAAMASQEQEIAVADYFNKLRVKANIEI 272


>gi|329908176|ref|ZP_08274836.1| Peptidyl-prolyl cis-trans isomerase ppiD [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327546752|gb|EGF31691.1| Peptidyl-prolyl cis-trans isomerase ppiD [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 642

 Score = 67.4 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/252 (12%), Positives = 64/252 (25%), Gaps = 11/252 (4%)

Query: 63  LKLQKINGELEKIAVQELIVETL---KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
           +  Q++  ++    +   I  T    K      S I     TV     + A         
Sbjct: 149 MYEQRLRQDMAVQQLNSAIQSTAFAPKTVATRLSDINDQERTVQELLFKPADYAAKVNVT 208

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
                         F+        +  +  +    +    + E+    ++ K     +  
Sbjct: 209 ADMLKAYYDKNARQFEVPEQATIQYVVLSSDALASQIAVTDQEVADFYEQNKKSFGVDEQ 268

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-----DVSIGKA 234
            R     I   K  +          AE+   ++ K      K A             G  
Sbjct: 269 RRASHILINLKKGASATEKAAAKAKAEQVLAQVRKAPGDFAKIAKASSEDQGSAPEGGDL 328

Query: 235 QYLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQ 291
            +  +  +  P  + + K   N  +    +  G   I +   +         +K  + A 
Sbjct: 329 DFFGKGAMTPPFEEAVFKLKLNEISGLVESDFGFHIIEVTAIKPASFRTLDQVKPQIVAD 388

Query: 292 NTPTKIEKHEAE 303
               K  K  +E
Sbjct: 389 IKRQKAAKQYSE 400



 Score = 60.8 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 50/164 (30%), Gaps = 18/164 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKR- 59
           M   V T     ++ L    ++  F +V + SYKS+  +  +   + G+ IT  +     
Sbjct: 1   MFEFVRTH-KRLMQFLLLLIIVPSFALVGLGSYKSFGDAENVIAKVGGQPITQVEYDAAQ 59

Query: 60  ------------IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
                                  E  +  +  LI +     E  +  ++     +     
Sbjct: 60  REQMARFKQMFGAQFDPKMFDTPEARQGILDNLIAQRALSVEAARQHLSVADAALQQSIT 119

Query: 108 QHA----RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
             A     +     E + S L  QG+    ++Q L        +
Sbjct: 120 GIAGLVGPDGKFDGERYRSLLAMQGMTPAMYEQRLRQDMAVQQL 163


>gi|149372555|ref|ZP_01891667.1| possible peptidyl-prolyl cis-trans isomerase [unidentified
           eubacterium SCB49]
 gi|149354598|gb|EDM43162.1| possible peptidyl-prolyl cis-trans isomerase [unidentified
           eubacterium SCB49]
          Length = 653

 Score = 67.4 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/271 (11%), Positives = 79/271 (29%), Gaps = 40/271 (14%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +      I+F ++  +   +   S  +  TI+G  +   +  +                 
Sbjct: 1   MKLKITSILFMLLVTLVASAQKKSD-VIMTIDGNPVYANEFVRVYQKNL----------- 48

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
              EL+ +  +K       +  D         +   N         S  ++Q   +  ++
Sbjct: 49  ---ELVQDESQKSVDGYLDLFVDYKLKVAEAYEQGLNNNDDYRKEFSKYEEQLSRNYLYE 105

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +          +  + LK                           ++ S  D+  Q+ 
Sbjct: 106 DKVTTDLAKLAYERGKYDLKVA-----------------------HILVRSSYDDVPQDT 142

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS-IGKAQYLLESDLHPQFQNLLKKSQ 254
                +IK+A +              ++ +       G   Y     +  QF+++  ++ 
Sbjct: 143 LKAYNKIKEALDKARSGEDFGTLAGTYSEEPGAAERGGDIGYFSTFTMVHQFEDMAYETP 202

Query: 255 -NNTTNPYVTQKGVEYIAICDKRDLGGEIAL 284
               ++   TQ G   + + DKR+   +I +
Sbjct: 203 VGEISDIVRTQFGYHILKVEDKRERSPDITV 233



 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/116 (10%), Positives = 34/116 (29%), Gaps = 4/116 (3%)

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESD 241
            +     +        ++RI +      +     +  ++++         GK     +  
Sbjct: 235 HIMISDKDNAARTFDPEERINEVNTLLKQGSSFEDLAKQYSEDKNSGKKGGKLNRFGKGQ 294

Query: 242 LHP---QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP 294
           L     +      K+  + + P+ T+ G   + + +K         K  L  +   
Sbjct: 295 LRSAAFEEVAYGLKNVGDVSEPFKTEFGWHIVRLDEKHTHQTFEEQKEMLEKKVGE 350


>gi|241764579|ref|ZP_04762596.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax
           delafieldii 2AN]
 gi|241365982|gb|EER60603.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax
           delafieldii 2AN]
          Length = 309

 Score = 67.4 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/179 (8%), Positives = 50/179 (27%), Gaps = 6/179 (3%)

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           I   + +   + +                +       +R VLF++       Q  ++   
Sbjct: 118 IEQLLERELPIPEPSEEACRRYHEAHPAAHAQGERAQLRHVLFAVTPGVDVKQLRLRAEA 177

Query: 203 KDAEESRLR--LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTT 258
              +         +      ++++       G   +L  +D  P+F   +         +
Sbjct: 178 MLLDLRCADDGGVRFAEAAAQWSNCPSGQQGGDLGWLSRADCAPEFAREVFGSAEIGVLS 237

Query: 259 NPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
               ++ G+  + +  +          ++  +              +Y++ L   A++ 
Sbjct: 238 RLVHSRFGLHVVEVVAREAGLQPSFEEVRKAIGLTLRQQAWVNALRQYLQLLAGAAVVE 296


>gi|194018008|ref|ZP_03056615.1| YacD [Bacillus pumilus ATCC 7061]
 gi|194010345|gb|EDW19920.1| YacD [Bacillus pumilus ATCC 7061]
          Length = 302

 Score = 67.4 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/323 (11%), Positives = 96/323 (29%), Gaps = 35/323 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           + ++V  +    + ++    +  +     +    S   S     +I  E +T  +  K++
Sbjct: 3   LKARVVWTFILVLLMINAVVIAYVLTKSQMSQASSNGKSGEEIASIGKEKVTRQEWLKKM 62

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
                        K  ++++I + +  Q  +++ +   S  +N   +     +    ED 
Sbjct: 63  --------EDRYGKATLEQMINQKVVDQLAKENKLEVSSKEINRELLMLKAVSNNFYEDG 114

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
                      +  ++    Q  +  +++          E E  +  +K K++   +   
Sbjct: 115 -----------HTSEKDWTEQIRYQILLEQLLTRDAVVSEKEAKSFYEKNKDLYQYDDSY 163

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R     +                   + +     +    E+   +      G   ++ E 
Sbjct: 164 RIRHIVVKTKGEAENVLK--------DLKGGSSFEAVAAERSIDRYTSPYGGDLGFVTEE 215

Query: 241 DLH----PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTP 294
                     +    +    T  P  T+ G   I + +K D        +K  +  Q   
Sbjct: 216 QESIPALYIQEAQKLQPDQWTKEPIETKNGYAIIQLKEKLDGRSFSYEEVKNQIKRQIAM 275

Query: 295 TKIEKHEAEYVKKLRSNAIIHYY 317
             + +     VK L   A + ++
Sbjct: 276 EDLGEKAN--VKTLWKEAKVTWF 296


>gi|319900080|ref|YP_004159808.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacteroides
           helcogenes P 36-108]
 gi|319415111|gb|ADV42222.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacteroides
           helcogenes P 36-108]
          Length = 518

 Score = 67.4 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/301 (8%), Positives = 89/301 (29%), Gaps = 42/301 (13%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           + ++     ++  C+    S  +      +   ING+ +   +             +   
Sbjct: 1   MIMIKNGLAIVFLCL----SLATAVAQDPVLMRINGKDVLRSEFEYVYN---KNNKSASA 53

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            ++  +  +   +  +       T   +T + F  +       S+  +    + +    +
Sbjct: 54  RQVMPKNYVGTFIDYKLKVAEAETAGMDTTSAFRDKLEARRRWSSISYLVDEETEERIAH 113

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            F   L        V  +                                   +I  + L
Sbjct: 114 RFYNRLKFARQAGKVRVSHIFKYLSQ---------------------------NISGHAL 146

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK- 251
                    I      + +       +  F+ +  +       ++    +  +F++++  
Sbjct: 147 HEIEAKMDSIYQMLRKQGKNADFDACVVDFSDEKSEF------WVSWLQMPAEFEDIVFG 200

Query: 252 KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS-AQNTPTKIEKHEAEYVKKLRS 310
                 ++P+ T +G+  + + ++R+L     +K  +  ++    ++++     V+KL+ 
Sbjct: 201 MQVGEISHPFFTPQGIHIVKVLERRELPPFEEVKEGIMHSRTYRYEMDEEMDALVEKLKK 260

Query: 311 N 311
            
Sbjct: 261 E 261


>gi|120555794|ref|YP_960145.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinobacter
           aquaeolei VT8]
 gi|120325643|gb|ABM19958.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinobacter
           aquaeolei VT8]
          Length = 92

 Score = 67.4 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 9/78 (11%), Positives = 27/78 (34%), Gaps = 1/78 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           + + ++ +++           ++ +S     + G         + P+F + +     N  
Sbjct: 14  EAKCEELKKAIEGGQDFAEVAKQHSSCPSGRNGGDLGSFGPGQMVPEFDKAVFNSELNTV 73

Query: 258 TNPYVTQKGVEYIAICDK 275
             P  TQ G   + +  +
Sbjct: 74  IGPIKTQFGYHLLEVTSR 91


>gi|224437416|ref|ZP_03658385.1| hypothetical protein HcinC1_05580 [Helicobacter cinaedi CCUG 18818]
          Length = 281

 Score = 67.4 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 64/239 (26%), Gaps = 4/239 (1%)

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
              + KQ I        S+      +Q   N  L  +   +               +  Q
Sbjct: 41  DLEILKQSIPNFNYAKLSDQEKEGIIQELVNRQLILKAAKAEKLDTSKEYTEAINNIKDQ 100

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
            +     K            +    +    N  +           +   + + +  +++ 
Sbjct: 101 LLIDLWSKKQVGGIQMPSVNDAQIKEIYKNNEGMFINQEMHARHILVKTESEAKDIIKEL 160

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT--N 259
            K  +++  +  +  N      +     + G       + +HP F N     +  T    
Sbjct: 161 DKAGKKAESKFIELANAKSTDPASKQAKNGGDLGTFQRNVMHPDFANAASNLKPGTYTQE 220

Query: 260 PYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           P  T  G   I +  K +         K  +  Q     ++    + ++ LR  A I  
Sbjct: 221 PVQTPFGYHVIYLIKKSEPKIIPYNEAKKIIEEQIKMQNVQGGMMQKIQALREKAKIQI 279


>gi|189426077|ref|YP_001953254.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi
           SZ]
 gi|189422336|gb|ACD96734.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi
           SZ]
          Length = 242

 Score = 67.4 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 11/114 (9%), Positives = 27/114 (23%), Gaps = 5/114 (4%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQN 255
             + R    +          +  ++ +S       G         + P+F  ++     N
Sbjct: 11  DTEARCLQLKADIEAGADFADVAQRESSCPSRQKGGDLGTFGPGQMVPEFDQVVFSGELN 70

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGE----IALKAYLSAQNTPTKIEKHEAEYV 305
               P  TQ G   I + ++ +         +              +       
Sbjct: 71  KVLGPVKTQFGYHLIEVTNRWEQPATQAGGESDLDQALVALRQDMSDATAQSKF 124


>gi|330817266|ref|YP_004360971.1| Peptidyl-prolyl cis-trans isomerase D [Burkholderia gladioli BSR3]
 gi|327369659|gb|AEA61015.1| Peptidyl-prolyl cis-trans isomerase D [Burkholderia gladioli BSR3]
          Length = 646

 Score = 67.4 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/257 (7%), Positives = 51/257 (19%), Gaps = 12/257 (4%)

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            +    ++ Q    +L    +          Q +                          
Sbjct: 151 DQYQESVRYQLSQSQLPNNLINSAFTPRSVAQRLTDLAQQQREIQAMVLKPADYAAKVQP 210

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            +   S             +  +IQ +                + ++    +        
Sbjct: 211 TDAQLSAYYDAHKQAFATPETASIQYLV--FTPAAAAANAQPSDADLHKFYEDNTARFRT 268

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-----SKIHDVSI 231
           E  +R     I   +  +          AE+    +    ++  + A             
Sbjct: 269 EAQVRVSHIFIAAARNASASDKAAAKAKAEQLLAEVTAHPDQFAQIAEKNSQDAPSAAKG 328

Query: 232 GKAQYLLESDL---HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKA 286
           G   Y+                       +    +  G   +   D +         +K 
Sbjct: 329 GDLGYVTRGSTAGGPAFDDAAFALKPGELSKVVESDLGYHILKATDVKPAVVKPFDEVKD 388

Query: 287 YLSAQNTPTKIEKHEAE 303
            ++ +       K  ++
Sbjct: 389 SIATELKQQFAAKAFSD 405



 Score = 44.7 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/211 (9%), Positives = 59/211 (27%), Gaps = 15/211 (7%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN-------------GELE 73
            V +  ++ +   S    +++G  IT  +          Q                 E  
Sbjct: 26  FVGVQGFRDFFDDSANVASVDGHKITRAEFDGAYRQQIDQARQALGANFDAKQFDTPERR 85

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV--QHARNTGLSAEDFSSFLDKQGIGD 131
           +  +  +I +     E+ +  +T   N V    +      +         +    Q +  
Sbjct: 86  QQLLDGIIEQRALTDEVRRLHLTASDNAVREALMSNPIIASLRKPDGSIDAERYTQLLAM 145

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                    +S+   + ++       N      +  Q++ ++  ++  I+ ++    D  
Sbjct: 146 QGMTPDQYQESVRYQLSQSQLPNNLINSAFTPRSVAQRLTDLAQQQREIQAMVLKPADYA 205

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            + Q    +     +  +           ++
Sbjct: 206 AKVQPTDAQLSAYYDAHKQAFATPETASIQY 236


>gi|291279157|ref|YP_003495992.1| hypothetical protein DEFDS_0758 [Deferribacter desulfuricans SSM1]
 gi|290753859|dbj|BAI80236.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 325

 Score = 67.4 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/315 (11%), Positives = 102/315 (32%), Gaps = 16/315 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA-------LLKL 65
           ++ +     ++IF +V + S   +A   ++   +N + I   ++   +            
Sbjct: 9   MRFILNCAKILIFIMVLVHSNLLFA-EDKVVAKVNEQDIHLFEVKSFLNKVVPIGRFHTQ 67

Query: 66  QKINGELEKIAVQELIVETLKKQEIEKSGITFDS--NTVNYFFVQHARNTGLSAEDFSSF 123
                E  + A+   I        I+ +     +         ++  +    S  +++  
Sbjct: 68  SLNKKEYWEKALNTAIDSRAIVIFIKNNNPEIYNGLKNKVNEIIKVIKKRFKSNNEYAKA 127

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
           L + GI +    +     ++   + +  F  K     ++      +    T   Y+++  
Sbjct: 128 LKENGITEKILYETYMDLNVKDIIKEKIFSEKIEPKVLKEYYKNNQQMFSTGESYVVKNC 187

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
           L      +L+ +   +K+ +     ++   +D    +K    I+         + +   +
Sbjct: 188 LIKADARELKAKEMEEKKKEAENLLKMLKEEDEKAWQKCDKGIYPEQ----DTVYKFSKN 243

Query: 244 PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHE 301
              + + K  + +   PY    G   + + D +         +K  +       K + + 
Sbjct: 244 YPIKEIFKLKKGDFGGPYRNIYGYLIVKVIDIKPSEVLPFDEIKNEIERLMKLKKFKDYY 303

Query: 302 AEYVKKLRSNAIIHY 316
              +K+ +  A I  
Sbjct: 304 KNLLKRAKDEANIKI 318


>gi|21673044|ref|NP_661109.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Chlorobium tepidum
           TLS]
 gi|21646111|gb|AAM71451.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Chlorobium tepidum
           TLS]
          Length = 700

 Score = 67.4 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 41/134 (30%), Gaps = 4/134 (2%)

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLES 240
            +L  +              +K   E         +   K++       + G   +  + 
Sbjct: 350 HILIRLNPADKAEAARAMGLLKKISEELKGGASFASLAAKYSEDPGSARNGGFVGWFTKD 409

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAIC--DKRDLGGEIALKAYLSAQNTPTKI 297
            + PQF   +          P  TQ G+  I I   D R +      +   ++  T   I
Sbjct: 410 RMVPQFAQAVFAGKPGQIVGPVQTQFGLHIIKIEGFDNRRIVCSEVARQIKASTQTSETI 469

Query: 298 EKHEAEYVKKLRSN 311
           ++    ++ + +S 
Sbjct: 470 KRQAQAFLTEAKSK 483



 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 2/80 (2%)

Query: 240 SDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKI 297
                  + +     N  + P  T  G   + +  ++        A K  +  Q    + 
Sbjct: 620 GVDPQLVEGMAGMKLNTLSQPVQTSGGYALVQLTSRQLAPGTDLAAEKQKVLPQLMQARQ 679

Query: 298 EKHEAEYVKKLRSNAIIHYY 317
           ++  +EY++  R NA I  +
Sbjct: 680 QQFLSEYLQSYRRNAKIEDF 699


>gi|229161287|ref|ZP_04289272.1| Foldase protein prsA 1 [Bacillus cereus R309803]
 gi|228622101|gb|EEK78942.1| Foldase protein prsA 1 [Bacillus cereus R309803]
          Length = 256

 Score = 67.4 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 39/137 (28%), Gaps = 6/137 (4%)

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLH 243
           +             +K  K+ +E            ++++         G+          
Sbjct: 104 YKPEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEIPGFAPGQTV 163

Query: 244 PQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEA 302
            +F+    K      + P  T  G   I   DK++L     +K  +       +++    
Sbjct: 164 KEFEEAAYKLDAGQVSEPIKTTYGYHIIKATDKKELKPFDEVKGEIRKDLEEQRLQDTTG 223

Query: 303 EY----VKKLRSNAIIH 315
           ++    V  L   A I 
Sbjct: 224 KWKQQVVTDLLKAADIK 240


>gi|319897486|ref|YP_004135683.1| peptidyl-prolyl cis-trans isomerase d [Haemophilus influenzae
           F3031]
 gi|317432992|emb|CBY81363.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
           F3031]
          Length = 622

 Score = 67.4 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/395 (11%), Positives = 111/395 (28%), Gaps = 84/395 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD-ISKR 59
           +  K+    +  I       + + F +  +  Y  ++ +      +NGEVI+  D +++ 
Sbjct: 2   LIEKMHNLTNSKISKFILGLITVSFLVGGMSGYL-FSSNDTYAAKVNGEVISQQDFLNRY 60

Query: 60  IALLKLQKING---------------ELEKIAVQELIV-----------------ETLKK 87
               +++                    L +  V  +I                  E +K+
Sbjct: 61  NQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
             +            N  + +  +   L+++ ++S L      +         + I P  
Sbjct: 121 AIVTDPNFQVKGKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVPAQ 180

Query: 148 VK-------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL---- 184
           VK                    D M K    + EI    +  +   V+   ++       
Sbjct: 181 VKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYIDLS 240

Query: 185 ------------------------FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
                                     +  +    Q   ++  K A E   +     +  +
Sbjct: 241 ADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQFANEQDAKVAYEELEKGANFADVAK 300

Query: 221 KFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL 278
             +  KI   + G   ++ E++L   F++          + P         + + +++  
Sbjct: 301 AKSLDKISGENGGDLGWVNENELPKAFEDAAAALQVGQYSQPINVDGNYHIVLVQERK-A 359

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                +KA ++     + +E       K+    A 
Sbjct: 360 QSLENVKAQIADLVRKSLMESRYFSLEKQASDKAF 394


>gi|296122979|ref|YP_003630757.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces
           limnophilus DSM 3776]
 gi|296015319|gb|ADG68558.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces
           limnophilus DSM 3776]
          Length = 377

 Score = 67.4 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/284 (10%), Positives = 80/284 (28%), Gaps = 31/284 (10%)

Query: 41  RIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
           ++   +N E+I    +++               K  + ++I  T+ +Q  E +G+T    
Sbjct: 72  KVMARVNKEIIPFDMVAEECV--------ARYGKEVLDDIINRTMIQQACEAAGVTVTEE 123

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
            V     + A+      +  + +   Q     + +QY          +K     K    E
Sbjct: 124 EVTAEINRIAKRFN--LDVNNWYQMLQAERGINPQQYRRSVIWPMLALKKLASEKIDIKE 181

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+                 R +L             +++     E++           +
Sbjct: 182 EELNRAF---VRNYGPRVKARMILM----------DNLRRATTVWEKANADADNFEKYAQ 228

Query: 221 KFASKIHDVS-IGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVT-QKGVEYIAICDKRD 277
           +F+      +  G    + +   +   +       +   +            I  C+ R 
Sbjct: 229 EFSIDPQSRALGGSVPPIPKYSGNDSLEKAAFALKEGEISGVIEVGPSRFAIIK-CEGRT 287

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEA----EYVKKLRSNAIIHYY 317
           +     L   +         E+       +  ++++ +  I  Y
Sbjct: 288 VPTVNELTQEIRDSLYDELAEQKTQVSVAKTFEEIQKSTRIDNY 331


>gi|157690854|ref|YP_001485316.1| peptidylprolyl isomerase [Bacillus pumilus SAFR-032]
 gi|157679612|gb|ABV60756.1| possible peptidylprolyl isomerase [Bacillus pumilus SAFR-032]
          Length = 302

 Score = 67.4 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/323 (11%), Positives = 96/323 (29%), Gaps = 35/323 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           + ++V  +    + ++    +  +     +    S   S     +I  E +T  +  K++
Sbjct: 3   LKARVVWTFILVLLMINAVVIAYVLTKSQMSQASSNGKSGEEIASIGKEKVTRQEWLKKM 62

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
                        K  ++++I + +  Q  +++ +   S  +N   +     +    ED 
Sbjct: 63  --------EDRYGKATLEQMINQKVVNQLAKENKLEVSSKEINRELLMLKAVSNNFYEDG 114

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
                      +  ++    Q  +  +++          E E  +  +K K++   +   
Sbjct: 115 -----------HTSEKDWTEQIRYQILLEQLLTRDAVVSEKEAKSFYEKNKDLYQYDDSY 163

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R     +                   + +     +    E+   +      G   ++ E 
Sbjct: 164 RIRHIVVKTKGEAENVLK--------DLKGGSSFEAVAAERSIDRYTSPYGGDLGFVTEE 215

Query: 241 DLH----PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTP 294
                     +    +    T  P  T+ G   I + +K D        +K  +  Q   
Sbjct: 216 QESIPALYIQEAQKLQPDEWTKEPIETKNGYAIIQLKEKLDGRSFSYEEVKNQIKRQIAM 275

Query: 295 TKIEKHEAEYVKKLRSNAIIHYY 317
             + +     VK L   A + ++
Sbjct: 276 EDLGEKAN--VKTLWKEAKVTWF 296


>gi|33152751|ref|NP_874104.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus ducreyi 35000HP]
 gi|38605184|sp|Q7VKX4|PPID_HAEDU RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase
           D; AltName: Full=Rotamase D
 gi|33148975|gb|AAP96493.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus ducreyi 35000HP]
          Length = 620

 Score = 67.4 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 15/171 (8%), Positives = 42/171 (24%), Gaps = 6/171 (3%)

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV--QKRIKDAE 206
           +   +     +  +I  N Q         Y      F            +  +++ K   
Sbjct: 228 EQLVVEYVTFMPKDIEKNIQVTDEQVATYYEKNKADFVTKGETHLAHIQLANEEKAKQVA 287

Query: 207 ESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQ 264
           E+  +           +   +     G   +         F+      + N  + P    
Sbjct: 288 EALKQGTDFAMLANDTSTDSLSAQQGGDLGWTKAGIFPEIFEQTANALAINEVSEPVKVD 347

Query: 265 KGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                I + D+++        +K  +        +    +    ++ + A 
Sbjct: 348 NNYHIIKVLDRKEDVALPFEMVKDKIVKIIRDELLLTEYSNISHEMANKAF 398



 Score = 39.3 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 19/193 (9%), Positives = 49/193 (25%), Gaps = 21/193 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+    +         F L+    V          +      +NG  I     +   
Sbjct: 1   MIEKMHERTNSVA--FKVIFALVSLSFVLTGIGTGLVGADTSAVKVNGTTIDQHAFNTAK 58

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           A  +                      +  +  +  L+ + L +Q  +   +   +N +  
Sbjct: 59  ARQQNVLNAQLGERFWDLLDTPEYAKQFNQSVLDGLVNDELMRQYAKDLKLGISANQIKS 118

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
                    ++   + E +   L   G+  + +   +    +   + K      +     
Sbjct: 119 QIVNSQIFQQDGKFNNELYQHTLRNNGLTADGYAAIVNEGMLLSQIQKGIVESDFSVPVT 178

Query: 162 EIPANKQKMKNIT 174
           E    K  ++   
Sbjct: 179 EALLAKLLLQQRQ 191


>gi|78486057|ref|YP_391982.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomicrospira
           crunogena XCL-2]
 gi|78364343|gb|ABB42308.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomicrospira
           crunogena XCL-2]
          Length = 93

 Score = 67.4 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 10/82 (12%), Positives = 26/82 (31%), Gaps = 1/82 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             + +  + ++         +  +  +S     S G         + P+F +        
Sbjct: 12  ETEAKALELKKQIEEGADFADVAKANSSCPSSRSGGDLGQFGPGMMVPEFDKVCFSADVG 71

Query: 256 NTTNPYVTQKGVEYIAICDKRD 277
           +   P  TQ G   + + D+ +
Sbjct: 72  SLEGPIKTQFGYHLVEVTDRTE 93


>gi|74317691|ref|YP_315431.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057186|gb|AAZ97626.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 647

 Score = 67.4 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 36/162 (22%), Gaps = 8/162 (4%)

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
               E  +            +          I  +K  +     K    A      L K 
Sbjct: 259 ISVSEQAVRDYYAANAAQFGQPEQRSASHILIAADKDSDAATRAKAKAKATALMETLRKQ 318

Query: 216 CNKLEKFASKIHDVSI-----GKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEY 269
             +  + A             G         +   F++ +          P  +  G   
Sbjct: 319 PERFGELARSTSQDPGSAEQDGSLGSFGRGMMVKPFEDAVFAMKPKEIRGPVESDFGYHI 378

Query: 270 IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           I +       G+ A  A + A       ++   +    L  N
Sbjct: 379 IRLDSIEP--GKAAPLAEVRAAIVDELRKQQAQKTFADLADN 418



 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 33/137 (24%), Gaps = 13/137 (9%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
              +      ++  +    + + F +  I SY S   S  +   +    IT  ++++ I 
Sbjct: 16  LEAIRKHAKGWLAKVILGLIAVTFALFGIDSYMSGDRSGGVVAEVGKVGITREELTREIQ 75

Query: 62  -------------LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
                                    K  +  LI       E EK       + V     Q
Sbjct: 76  AQSDRLRESLGPAFDPSMTETAAFRKQVLDSLIERKALLLEAEKLKFLAPDSYVAAAIGQ 135

Query: 109 HARNTGLSAEDFSSFLD 125
                         +  
Sbjct: 136 IPAFQQDGKFSPQRYEA 152


>gi|71907025|ref|YP_284612.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas
           aromatica RCB]
 gi|71846646|gb|AAZ46142.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas
           aromatica RCB]
          Length = 271

 Score = 67.4 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/199 (9%), Positives = 58/199 (29%), Gaps = 3/199 (1%)

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
              + E+F   + +  + +   +Q +        V++           ++     +    
Sbjct: 70  RYPANEEFILDMARSDLDEAALEQAVERDLRIEAVLEKVASSSPPVSAVDAEIYYRLHPE 129

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
              R    R     I  N  Q +      ++    +     K      + +     +  G
Sbjct: 130 AFDRPEARRLRHILITFNTPQEKAKAIATLESLRSTLKNPAKFAEAALRHSQCPTAMEGG 189

Query: 233 KAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLS 289
           +   +    L+ + +      ++   +    +  G+  +   +    G      +   + 
Sbjct: 190 QLGTVKRKQLYAELEPAAFALNEGEISAVLASPIGLHILRCDEILPSGMLAFGEVCERII 249

Query: 290 AQNTPTKIEKHEAEYVKKL 308
           A+    +  + + E++K L
Sbjct: 250 ARLGDKRRREAQREWIKSL 268


>gi|303241900|ref|ZP_07328394.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio
           cellulolyticus CD2]
 gi|302590574|gb|EFL60328.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio
           cellulolyticus CD2]
          Length = 495

 Score = 67.4 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/297 (11%), Positives = 87/297 (29%), Gaps = 22/297 (7%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGE-----------LEKIAVQELIVETLKKQ 88
             I  ++NG+ +   D             N             L+      L++ T+  Q
Sbjct: 194 DVIVGSVNGQALHKKDFDYIFNPQYNNFKNNNTTEPTETDLKTLKDTCFDNLVLYTVLMQ 253

Query: 89  EIEKSGITFDSNTVNYF--FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
           +  K   T   +        +          E+F S +++ G+    F   L    +   
Sbjct: 254 KAAKGNYTLSESDYGEINDTINSYIQAYGGVENFRSIMEESGVTLYQFSNNLRDSKLINK 313

Query: 147 VVKNDFML-KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
           +  +           ++      K   I   +   + +LFS  +   ++    +K     
Sbjct: 314 MALDLVTNVNASEETIKKYYEDNKSMYIQPEQVRAKHILFSTKEITGEDYDAQKKAEIKK 373

Query: 206 E-----ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTN 259
           +                 + K+       +        + ++  +F+           ++
Sbjct: 374 KAEEVLAQIKAGADFDELMNKYTEDPGTANYPNGYTFSKGEMVQEFEEKSFSMKVGEISD 433

Query: 260 PYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              TQ G   I + +K          +K  + A+  P + + +  + + + ++ + I
Sbjct: 434 LVETQFGYHIIKLEEKIPETQLKLDDVKDSIKAELDPQEKQNYFDKLLVQFKAESAI 490


>gi|256823166|ref|YP_003147129.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kangiella koreensis
           DSM 16069]
 gi|256796705|gb|ACV27361.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kangiella koreensis
           DSM 16069]
          Length = 624

 Score = 67.4 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/375 (10%), Positives = 100/375 (26%), Gaps = 101/375 (26%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK------------INGELEKI 75
               +   ++ +      + G  IT+  I +R+  ++ Q                 L + 
Sbjct: 15  AGYFTGTLFSGNPDKVAEVEGAEITNAQIQQRVDNVRRQMGDQFEQQYATEASQQLLRQQ 74

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVN---YFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
             ++LI E + +  + K+G+T     +      F         SA+     L +QG  + 
Sbjct: 75  IKEQLISEQVLRANLTKAGLTASEQQIKAWAREFPAFQIGGVYSADQAKMILAQQGWSEE 134

Query: 133 HFKQYLAIQSIWPDV---------------------------------VKNDFMLKYGNL 159
            F+Q+   Q     +                                  +  F       
Sbjct: 135 RFRQFARQQIAQEQLEQGVGASNFALNFEVEAYYQLQEQTRDVGYVRVAREAFSDSVDVS 194

Query: 160 EMEIPANKQKMKNITVREYLIRT------------------------------------- 182
           + E+    ++ +    +  ++                                       
Sbjct: 195 DSEVKEYYEQNQTQFEQPEMVNLRYVRLSLTELSQDLMADVSNEQITSFYEQNKANYQDP 254

Query: 183 -VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYL--- 237
             +         +    Q + +       +        ++ +S      + G+  ++   
Sbjct: 255 AEILVAHILIDSSVEDAQSKAQSLLSDIEQGADFAELAKEHSSDTFSGENGGQLDWVDAV 314

Query: 238 -------LESDLHPQFQNL--LKKSQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKA 286
                    +   P+F+      ++  + T+   +Q G   I + DK+  D+     ++ 
Sbjct: 315 PTSDDNPTGTGWVPEFEAAALALENVGDVTDLVESQFGYHIIKLVDKKAADVSPLENVQD 374

Query: 287 YLSAQNTPTKIEKHE 301
            +  Q    + +K  
Sbjct: 375 EIRQQLALEQAQKIF 389


>gi|88813287|ref|ZP_01128526.1| peptidyl-prolyl cis-trans isomerase C [Nitrococcus mobilis Nb-231]
 gi|88789459|gb|EAR20587.1| peptidyl-prolyl cis-trans isomerase C [Nitrococcus mobilis Nb-231]
          Length = 131

 Score = 67.4 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 3/99 (3%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           ++R ++ +E            ++F+        G         + PQF +   +   N  
Sbjct: 14  EQRCRELKERIDNGEDFATLAKRFSHCPSGHHGGDLGEFGAGRMVPQFDEVAFEGELNKV 73

Query: 258 TNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTP 294
             P  TQ G   I +  +  R       L+    A    
Sbjct: 74  HGPVRTQFGYHLIEVLSRGERKDSPIAVLRRKCQASLRA 112


>gi|301312046|ref|ZP_07217968.1| putative PPIC-type PPIASE domain protein [Bacteroides sp. 20_3]
 gi|300830148|gb|EFK60796.1| putative PPIC-type PPIASE domain protein [Bacteroides sp. 20_3]
          Length = 522

 Score = 67.0 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 13/150 (8%), Positives = 44/150 (29%), Gaps = 4/150 (2%)

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-S 224
                K    R ++   ++    D+ +Q+      + +   +            ++++  
Sbjct: 218 KVHSRKPNPGRVHVAHILIAFPKDSAIQDSSAFLAKAQAIYKQVQEGADFGELAKEYSGD 277

Query: 225 KIHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLGGEI 282
                  G   +    ++   F+          + +    T+ G   I + DK+      
Sbjct: 278 AASAKKGGVLPWFGIGEMVQPFEQAAFALSKPGDLSGVVETRFGYHIIKLIDKKGRPSFE 337

Query: 283 ALKAYLSAQNTPTKIE-KHEAEYVKKLRSN 311
             +  LS +    +   +    +  +++  
Sbjct: 338 EEEKALSRRMGQGERNFELYKAFDDRMKKE 367



 Score = 40.4 bits (92), Expect = 0.38,   Method: Composition-based stats.
 Identities = 28/262 (10%), Positives = 58/262 (22%), Gaps = 40/262 (15%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           +LI   +   V+  +   S  +  T+ G+ +   +                         
Sbjct: 4   LLISLGVFACVTVNAQIASDSVVMTVAGKQVPLSEF------------------------ 39

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
                     +   +   S      +V+  +N  L   +  S    Q             
Sbjct: 40  -----IFIAEKNGEVDLSSTKSVKSYVELFKNFKLKVAEAESLGIDQTSSFKSELDGYRA 94

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           Q                + E E  A +           L   +         ++   V +
Sbjct: 95  QL---------IDSYMSDKEGEKAAARAVYDRGDHSVELTYILFRLPEKTVSKDTVAVYQ 145

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY--LLESDLHPQFQNLLKKSQNNTT 258
                 E   +        +  A K  +    +     L    L               +
Sbjct: 146 EAMRVYERLQKGEDMETVGKALAEKDKEHVACEYVRCLLPMQSLKVFEDAAYSLPIGVVS 205

Query: 259 NPYVTQKGVEYIAICDKRDLGG 280
            P  T+ G   I +  ++   G
Sbjct: 206 EPVRTKLGFHLIKVHSRKPNPG 227


>gi|56476305|ref|YP_157894.1| rotamase [Aromatoleum aromaticum EbN1]
 gi|56312348|emb|CAI06993.1| probable rotamase [Aromatoleum aromaticum EbN1]
          Length = 256

 Score = 67.0 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/201 (9%), Positives = 56/201 (27%), Gaps = 7/201 (3%)

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
            A           +    +    +   +  A Q     +V    +  +     E      
Sbjct: 24  FAVRKLSDEARARTLDAGERWKIDASMERAAAQVQLDHLVNGQELPDFDKAAREFYVAHP 83

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
           +      + +    ++ S   +K +     ++ +  A +      K   +  +  S    
Sbjct: 84  EQFVQPEQVHAQHVLIKSEGRSKEEALVLAKQVVAQANKDSQDFGKLAAEFTEDPSG--K 141

Query: 229 VSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIA 283
            + G   +     +   F++ +   KS      P  +Q G   I + +++    +  +  
Sbjct: 142 ANGGDLGFFARGSMVKPFEDAIFGLKSPGEIVGPVESQFGFHVIRLVERKAETTIPFDEV 201

Query: 284 LKAYLSAQNTPTKIEKHEAEY 304
               +  +    +      EY
Sbjct: 202 KDKLVRDETLKYRRMAIGKEY 222


>gi|262383886|ref|ZP_06077022.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294784|gb|EEY82716.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 533

 Score = 67.0 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 12/150 (8%), Positives = 44/150 (29%), Gaps = 4/150 (2%)

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-S 224
                K    + ++   ++    D+ +Q+      + +   +            ++++  
Sbjct: 229 KVHSRKPNPGQVHVAHILIAFPKDSAIQDSSAFLAKAQAIYKQVQEGADFGELAKEYSGD 288

Query: 225 KIHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLGGEI 282
                  G   +    ++   F+          + +    T+ G   I + DK+      
Sbjct: 289 AASAKKGGGLPWFGVGEMVQPFEQAAFALSKPGDLSGVVETRFGYHIIKLIDKKGRPSFE 348

Query: 283 ALKAYLSAQNTPTKIE-KHEAEYVKKLRSN 311
             +  LS +    +   +    +  +++  
Sbjct: 349 EEEKALSRRMGQGERNFELYKAFDDRMKKE 378



 Score = 43.9 bits (101), Expect = 0.035,   Method: Composition-based stats.
 Identities = 30/301 (9%), Positives = 69/301 (22%), Gaps = 41/301 (13%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +   +K      +LI   +   V+  +   S  +  T+ G+ +   +             
Sbjct: 3   IRAMVKEFLMKKLLISLGVFACVTVNAQIASDSVVMTVAGKQVPLSEF------------ 50

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
                                 +   +   +      +V+  +N  L   +  S    Q 
Sbjct: 51  -----------------IFIAEKNGEVDLSNTKSVKSYVELFKNFKLKVAEAESLGIDQT 93

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                       Q                + E E  A +           L   +     
Sbjct: 94  SSFKSELDGYRAQL---------IDSYMSDKEGEKAAARAVYDRGDHSVELTHILFRLPE 144

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY--LLESDLHPQF 246
               ++   V +      E   +        +  A K  +    +     L    L    
Sbjct: 145 KTVSKDTVAVYQEAMRVYERLQKGEDMETVGKALAEKDKEHVACEYVRCLLPMQSLKVFE 204

Query: 247 QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
                      + P  T+ G   I +  ++   G     A++          +  + ++ 
Sbjct: 205 DAAYSLPIGVVSEPVRTKLGFHLIKVHSRKPNPG-QVHVAHILIAFPKDSAIQDSSAFLA 263

Query: 307 K 307
           K
Sbjct: 264 K 264


>gi|221215735|ref|ZP_03588696.1| ppic-type ppiase domain protein [Burkholderia multivorans CGD1]
 gi|221164437|gb|EED96922.1| ppic-type ppiase domain protein [Burkholderia multivorans CGD1]
          Length = 262

 Score = 67.0 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 52/173 (30%), Gaps = 7/173 (4%)

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
           + +          +      +      R  ++                 +++R + A   
Sbjct: 78  ERELTHVPEPDRADCERYYAQHPARFRRNDIVYASHVLFAVTDRVPLAPLRQRAERALAD 137

Query: 209 RLRLPKDCNK-LEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ--NNTTNPYVTQK 265
            +  P   +      ++       G    +L  D  P+F+  L  +           T+ 
Sbjct: 138 VVAAPDTFDAVARASSNCPSAQVGGSLGQVLRGDTVPEFEAALFDTDGLGVLPKLVNTRF 197

Query: 266 GVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           G   + I D+R   D     A+ A ++A  T    ++   +YV  L   A I 
Sbjct: 198 GFHIVRI-DRRVAGDTVPFDAVAAQIAAHLTARVRQRAMRQYVAILAGGARIE 249


>gi|220935707|ref|YP_002514606.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219997017|gb|ACL73619.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 93

 Score = 67.0 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 10/80 (12%), Positives = 28/80 (35%), Gaps = 1/80 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNT 257
           ++   + +             ++++S       G+        + P+F  ++  +  N  
Sbjct: 14  EELCNELKARIEAGEDFAALAKEYSSCPSGQQGGELGRFGRGQMVPEFDRVVFSAPVNTV 73

Query: 258 TNPYVTQKGVEYIAICDKRD 277
             P  TQ G   + +  ++D
Sbjct: 74  QGPVKTQFGYHLLEVTSRQD 93


>gi|162455542|ref|YP_001617909.1| hypothetical protein sce7260 [Sorangium cellulosum 'So ce 56']
 gi|161166124|emb|CAN97429.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 358

 Score = 67.0 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/301 (9%), Positives = 63/301 (20%), Gaps = 52/301 (17%)

Query: 36  WAMSSRIRTTINGEVITDGD----ISKRIALLKLQKINGELEKIAVQELIVETLKKQEIE 91
              S+R+   +   VIT GD    + +     +L+    E  +  + ELI   L   E  
Sbjct: 42  AEQSARVLAKVGDRVITLGDFGRTLERMDQFDRLRYQTKERRRELLSELIDAELLALEAR 101

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
           + G+  D    +             A                                  
Sbjct: 102 RRGLDKDPAVEDTIRQILREAMIARARKGLPAPA-------------------------- 135

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                   E+         K        +  ++        +     QK    +    L 
Sbjct: 136 ---DIPASEVRAYYEANADKFSEPERRRVAAIVVGDRALGEKVLKEAQKAGSSSAWGELF 192

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLH-------PQFQNLLKKSQNNTT----NP 260
                   +  ++       G+   +             P+                   
Sbjct: 193 FKHSLTAPKDKSAAPPLDLAGELGIVSPPGDPRGAHPRVPEPVRAAAFRIGGVGAVGEEL 252

Query: 261 YVTQKGVEYIAICD-----KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                    + +       +R+       +  +       K++  E     +LR    + 
Sbjct: 253 VEADGRFFIVRLNGLTGGHRRE---FAEAERSIRVALLQQKMQDQERALEDELRKKFPVE 309

Query: 316 Y 316
            
Sbjct: 310 I 310


>gi|285808228|gb|ADC35762.1| peptidyl-prolyl [uncultured bacterium 293]
          Length = 640

 Score = 67.0 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/284 (10%), Positives = 78/284 (27%), Gaps = 24/284 (8%)

Query: 47  NGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLK----------KQEIEKSGIT 96
            GE +   +I +R+AL  + +      +   ++L+V+ L            Q+ EK    
Sbjct: 125 GGEFVGTDEIRRRLALQGISEDEKA--EQVREQLLVQRLYALVTDGVHVSDQDAEKEFRR 182

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-FMLK 155
                   +    A      A      +  +        +    + I   ++       +
Sbjct: 183 SSEKVKVEYVAVDAAPFATRATATDEEVAARFQSRREAYRIPERRVIGYLLLDAMALSKE 242

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN------QGFVQKRIKDAEESR 209
               +++I    +  +    +          +   +  +      +   +   +   +  
Sbjct: 243 VKVSDVDIRTYYEDHETQFQQPDEACARHIEVKVKQTADAPAGHTEEEARVLAQKLLDQV 302

Query: 210 LRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQ-KG 266
                     +K +         G           P+  Q +     N  ++   TQ  G
Sbjct: 303 KGGADFAEVAKKSSEDPGTSSRGGDLGCGGPETWGPELGQAIFTLPVNQVSDLIRTQAHG 362

Query: 267 VEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKL 308
              + +  +R  G +   ++K  +       K  +   E   K+
Sbjct: 363 FHIVQVLSRRQQGVQPLDSVKEGIRHILVQGKTRELAEERSSKI 406



 Score = 55.8 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 54/181 (29%), Gaps = 15/181 (8%)

Query: 12  FIKLLTTYFVLIIFCI-VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING 70
           ++K +    VL    + +P                +  E IT G+  +  +  +      
Sbjct: 12  WLKYMLLAVVLAFILLYIPAFQAGPGGGPGEEVARVGQEKITAGEFDRAFSRQRDALREQ 71

Query: 71  ----------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA--- 117
                      + +  +  LI   L  QE  + G+  D   V     +  ++ G      
Sbjct: 72  GVDPAMLEQLGVREEVLNGLIDGKLIVQEARRLGLAVDDEAVAAQIHREYQSRGGEFVGT 131

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
           ++    L  QGI ++   + +  Q +   +            + +     ++       E
Sbjct: 132 DEIRRRLALQGISEDEKAEQVREQLLVQRL-YALVTDGVHVSDQDAEKEFRRSSEKVKVE 190

Query: 178 Y 178
           Y
Sbjct: 191 Y 191



 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/90 (11%), Positives = 23/90 (25%), Gaps = 7/90 (7%)

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALK 285
             S G                         +    +  G   + + +K         A K
Sbjct: 545 GQSFGDLGTNQA-----LEDAAFSLPVQGLSEALPSPGGYAVLRVLEKTPFDPAAFAAQK 599

Query: 286 AYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           A + ++    +  +    Y+++ R    I 
Sbjct: 600 AEVVSKLEQQQKRQLFQAYIERARDRFPIE 629



 Score = 38.5 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 3/79 (3%)

Query: 237 LLESDLHPQFQNLLKKSQNNT-TNPYVTQKGVEYIAICDKRDLGGEI--ALKAYLSAQNT 293
           +   D            +  +   P+ T +G  +I + D +         ++  + A   
Sbjct: 439 VPPLDSPDLLARAFTLKRGESNPEPFGTAQGWLFIDVLDIQAPRLPELAEVQDRVRADLQ 498

Query: 294 PTKIEKHEAEYVKKLRSNA 312
             K      +   +LR+ A
Sbjct: 499 DEKARALARDKAVQLRAQA 517


>gi|330836698|ref|YP_004411339.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
           coccoides DSM 17374]
 gi|329748601|gb|AEC01957.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
           coccoides DSM 17374]
          Length = 92

 Score = 67.0 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 11/92 (11%), Positives = 23/92 (25%), Gaps = 1/92 (1%)

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
           +           +                 +     ++       G   +     +  +F
Sbjct: 1   MEWKASHILVKEKALADRLYAQIKGGADFSSLARTHSTCPSKSKGGDLGWFGPGKMVGEF 60

Query: 247 QNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD 277
           +  ++K S    + P  TQ G   I     RD
Sbjct: 61  ERAVQKLSHGAVSAPIRTQFGYHIIKKTGLRD 92


>gi|91793843|ref|YP_563494.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           denitrificans OS217]
 gi|91715845|gb|ABE55771.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           denitrificans OS217]
          Length = 625

 Score = 67.0 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/265 (10%), Positives = 63/265 (23%), Gaps = 8/265 (3%)

Query: 55  DISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
            +  +    K         +  +  L+          K        T +  ++    N  
Sbjct: 144 QLGYQAVSFKNMMRVDMTRRQLLSALVGSEFALDGEAKQLAEVQGQTRDIRYLTVESNQF 203

Query: 115 LSAED--FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
           L+                 + +     +   + ++   +          E+ A   + + 
Sbjct: 204 LADNSVTDEEAQAYYDANQSQYLSPEKVSLEYLELNVAELAKDITTSPEEVKAYYDEHQK 263

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSI 231
                         I  NK  +    + +                  +  +         
Sbjct: 264 QYQTAEKRLAAHILI--NKSDDDAADEAKAAAILAKLTAGESFEALAKTDSEDKFSGEQG 321

Query: 232 GKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYL 288
           GK  +     + P F + L    +   +    T+ G   I + D +   L     ++A +
Sbjct: 322 GKLDWFEPGVMAPAFDEALFSLEKGAHSGLVSTEFGYHIIKLLDVQAGQLAPFADVEAKI 381

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNAI 313
            AQ    K          KL   + 
Sbjct: 382 VAQIQEKKALDKFYGLQTKLADTSY 406



 Score = 59.7 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/217 (8%), Positives = 59/217 (27%), Gaps = 20/217 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+       +       V+  F    + SY   +        +NG+ ++  ++ +  
Sbjct: 1   MLEKIREGSQGVVAKGILVLVIFSFAFAGVSSYLGTST-DLPVAIVNGDEVSTSELEQAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     +++  +++L+ + L  Q     G+      +  
Sbjct: 60  QNERSRIEQQLGDMFETLAADDTYMAGIKQSVLEKLVGDKLIDQAAFALGLRVSDEQIKQ 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNH---FKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
             V           D S +             FK  + +      ++      ++     
Sbjct: 120 AIVSEPAFQTDGVFDNSRYQAVLRQLGYQAVSFKNMMRVDMTRRQLLSALVGSEFALDGE 179

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
                + + +   +R   + +  F   ++    +   
Sbjct: 180 AKQLAEVQGQTRDIRYLTVESNQFLADNSVTDEEAQA 216



 Score = 42.7 bits (98), Expect = 0.070,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 34/125 (27%), Gaps = 1/125 (0%)

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
           Q     +  +  A E   +L          +          +Q +        FQ  +  
Sbjct: 497 QQDKAKEAALNKAVEYMAQLKDSTFDASSLSLTTQAKLGRYSQDVDSGIAAKAFQMPVPA 556

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
               + +      G   I +       G    + + +  + TP   E      +  L++ 
Sbjct: 557 KDAVSIDTAELASGYAIILLDKVNPAEGINDNVLSAMKQRLTPQYSEADYRGLIASLKAK 616

Query: 312 AIIHY 316
           A I Y
Sbjct: 617 ADIEY 621


>gi|260568390|ref|ZP_05838859.1| LOW QUALITY PROTEIN: PpiC-type peptidyl-prolyl cis-trans isomerase
           [Brucella suis bv. 4 str. 40]
 gi|260155055|gb|EEW90136.1| LOW QUALITY PROTEIN: PpiC-type peptidyl-prolyl cis-trans isomerase
           [Brucella suis bv. 4 str. 40]
          Length = 193

 Score = 67.0 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/170 (12%), Positives = 51/170 (30%), Gaps = 6/170 (3%)

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
            D      +       N +              ++ + P ++       Q   + A    
Sbjct: 12  RDVPSASRDEAQRYYENNRHRFTSAPILEASHILIAADPADQETRDAARQTATRLAAAVI 71

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN--PYVTQKGV 267
                  +   +++S       G    L      P+F+  L++     T   P  ++ G 
Sbjct: 72  AEPATFASVALEYSSCPSGAQGGNLGQLTRGSTVPEFERALERMTPGETTANPIESRFGY 131

Query: 268 EYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             + + D+R   +      +   ++     +   K  ++Y+  L + A I
Sbjct: 132 HIVRL-DRRVEGEELPFDYVVDKIAGWLEASTWSKAVSQYIAILAAEAEI 180


>gi|311695520|gb|ADP98393.1| PpiC-type peptidyl-prolyl cis-trans isomerase [marine bacterium
           HP15]
          Length = 94

 Score = 67.0 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 9/78 (11%), Positives = 27/78 (34%), Gaps = 1/78 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           + + ++ +++           ++ +S     + G         + P+F + +     N  
Sbjct: 16  EAKCEELKKAIEGGQDFAEVAKQHSSCPSGRNGGDLGSFGPGQMVPEFDKAVFNGELNTV 75

Query: 258 TNPYVTQKGVEYIAICDK 275
             P  TQ G   + +  +
Sbjct: 76  IGPVKTQFGYHLLEVTSR 93


>gi|53803327|ref|YP_114963.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Methylococcus capsulatus str. Bath]
 gi|53757088|gb|AAU91379.1| PpiC-type peptidylprolyl isomerase domain protein [Methylococcus
           capsulatus str. Bath]
          Length = 312

 Score = 67.0 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/180 (11%), Positives = 46/180 (25%), Gaps = 6/180 (3%)

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
            +  + K  F L     E  +       +N      ++R                     
Sbjct: 118 AFQKLAKEHFPLPPVPEEDAVYKYYLDHQNDYGIPEMVRISQIQFRVPDNATAEQKAAAR 177

Query: 203 KDAEESRLRLPKDCNK---LEKFASKIHD-VSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           + AE +  RL           +           G   +L         + +        T
Sbjct: 178 QRAEAALRRLEAGEPFPKVAGELTENPSAKPPQGDIGFLPREGDPWLTEAVRNLKVGEHT 237

Query: 259 NPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
               +  G E + + D R       + ++  +  +    +  +    Y++ L  +A I  
Sbjct: 238 KVIESPAGYEILMLTDVRKALITPYVNVRDKVIQRMRGAEQARLRDAYIRDLAKHAKIEI 297


>gi|283780046|ref|YP_003370801.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pirellula staleyi
           DSM 6068]
 gi|283438499|gb|ADB16941.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pirellula staleyi
           DSM 6068]
          Length = 724

 Score = 67.0 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/283 (8%), Positives = 71/283 (25%), Gaps = 34/283 (12%)

Query: 41  RIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
           ++   +NGE IT  D+ +                  ++ ++   L         I     
Sbjct: 143 QVMAVVNGEQITRTDLGRECMR--------RFGNEVLESMLNRQLILDACAAQNIVITEQ 194

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
            V+    + A   GL  + +   L ++                    ++     K     
Sbjct: 195 DVDDEVDRIANKFGLPRDRWLQLLREERGFSEQEY--RTTVVWQMIALRRLVADKIQVTP 252

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+       ++    +   R +               +K  +    +  +     +  +
Sbjct: 253 EELKMAF---ESEFGPKVRARMI----------AVSSKEKADQVLAAAAAKPESFGDLAK 299

Query: 221 KFASKIHDVSIGKAQYLLESDL----HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
           ++       S      +    +        Q          ++          +   ++ 
Sbjct: 300 QYCEDPAVASAR--GVIPPIRMHTGDPTLEQIAFSLKPGELSSVIKVANLYYILLCDEQV 357

Query: 277 DLGGEIA-----LKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                        +  L+ +    K+    A++ + +R +A +
Sbjct: 358 PRMVLAPQHIPAQQERLTDKLRENKLRVSAAQFFENMRKSAQV 400



 Score = 64.7 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/285 (8%), Positives = 71/285 (24%), Gaps = 28/285 (9%)

Query: 42  IRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           +  TING  ++   +S+               +  ++  I   L +Q++ K  +      
Sbjct: 416 VAATINGRPVSMLQLSEEC--------ISRNGESVLEGEINRKLLEQQLAKRKLVITQQD 467

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGI-----GDNHFKQYLAIQSIWPDVVKNDFMLKY 156
           ++    + A + G    D +  +++               Y+         +K     + 
Sbjct: 468 IDAEVARAAASFGFVKADQTPDVERWMKTVIDEQGATPDLYIRDAVWPSVALKKLVGNRV 527

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
              E ++    +      V                        +++ +   +        
Sbjct: 528 EVTEEDLQKGYESNYGPRVEVLACVL-----------TDQRQAQKVWEMARANPTNDFFA 576

Query: 217 NKLEKFASKIHDV-SIGKAQYLLE-SDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICD 274
               +++ +     + G+   +          +   K      +           +    
Sbjct: 577 ELARQYSVEPSSRSNGGQVPPIRRYGGGAAIEEEAFKLKAGELSGLIAVGDQYIILRCLG 636

Query: 275 KRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           +          +K  L A     K+            ++A I  +
Sbjct: 637 RTSPVKADFATVKDELVADIQEKKLRILMNSEFDNTVASAQIDNF 681


>gi|301104936|ref|XP_002901552.1| PpiC-type peptidyl-prolyl cis-trans isomerase, putative
           [Phytophthora infestans T30-4]
 gi|262100556|gb|EEY58608.1| PpiC-type peptidyl-prolyl cis-trans isomerase, putative
           [Phytophthora infestans T30-4]
          Length = 265

 Score = 67.0 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 12/129 (9%), Positives = 32/129 (24%)

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
             + ++  ++     +        +  +           E+     K     ++ +    
Sbjct: 15  CCIASVAGQDAAPVAIQAHASHILVDTEAEADDLSVQLGEASNLFLKFAQLAKEHSKCPS 74

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY 287
               G         + P+F  +  + +    +   TQ G   + I  + D   E      
Sbjct: 75  SRKGGDLGTFDRGQMVPEFDKVAFEGEIGVVHKVKTQFGWHLVLISRRLDGTEEPDKYRD 134

Query: 288 LSAQNTPTK 296
           L        
Sbjct: 135 LKQALLKIM 143



 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/88 (12%), Positives = 30/88 (34%)

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
               ++++    K  K+ + +  +  K      K ++       G        ++ PQF 
Sbjct: 171 FHILVKSEDEADKLFKEIDAAEDKKTKLSELAGKHSTCPSGKKGGDLGMFGRGEMVPQFD 230

Query: 248 NLLKKSQNNTTNPYVTQKGVEYIAICDK 275
            ++ + +        TQ G   +   ++
Sbjct: 231 KVVFEGEVGELAKVQTQFGWHVLLCTER 258


>gi|163781832|ref|ZP_02176832.1| hypothetical protein HG1285_03078 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883052|gb|EDP76556.1| hypothetical protein HG1285_03078 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 437

 Score = 67.0 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/319 (9%), Positives = 87/319 (27%), Gaps = 28/319 (8%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE- 73
           ++    +  +F +  +   K      R    +N   I+  + +  +   +      EL  
Sbjct: 15  IIAVASLSFLFWMFSVSDIKQMFGLQRCAAAVNDYCISLREFNHELRKYQSLLEKEELRT 74

Query: 74  ---KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI- 129
              +  +  LI   L  Q+    G+      V     +  +        F  + +     
Sbjct: 75  LVKRQVLFSLINRELLYQKALDVGVVASDREVAELIKKDPQFQEGGKFSFKLYAETLERA 134

Query: 130 --GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL------IR 181
                 ++ YL        +++            E+   ++ +               ++
Sbjct: 135 GLTPVEYEGYLKKSLTIRKLLR-FIKSGTYLSPKELEFQERILSARFSGRAYLLNASSVK 193

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-----SKIHDVSIGKAQY 236
                  +   +      ++       R R+ +  +K +  +      +      G    
Sbjct: 194 LDYKPTLEELKEFYSRNAEKFSLPSVKRFRVWETADKGKAQSIYRELKRGKVPEGGSL-- 251

Query: 237 LLESDLHPQFQNLLKKSQNNTTNPY---VTQKGVEYIAICDKRD--LGGEIALKAYLSAQ 291
             E +L    ++ ++  +   T P+     +     I + +     +      +  +   
Sbjct: 252 FKEEELPSALKDTVRNLK--VTEPFTLTKVKGKYYVIYLEESSPGRVKSFEEARKDIEKL 309

Query: 292 NTPTKIEKHEAEYVKKLRS 310
               K  +   +  ++LR 
Sbjct: 310 LVEEKKAELVEKKARELRE 328



 Score = 37.7 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 71/237 (29%), Gaps = 9/237 (3%)

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           E LK+     +      +   +   + A      +        K   G + FK+     +
Sbjct: 201 EELKEFYSRNAEKFSLPSVKRFRVWETADKGKAQSIYRELKRGKVPEGGSLFKEEELPSA 260

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN---KLQNQGFVQ 199
           +   V        +   +++       ++  +              +    + +    V+
Sbjct: 261 LKDTVRNLKVTEPFTLTKVKGKYYVIYLEESSPGRVKSFEEARKDIEKLLVEEKKAELVE 320

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN 259
           K+ ++  E   +  +  +K  +F +   +       ++    +       L  S++    
Sbjct: 321 KKARELRELLSKGARVDHKHVRFDNSTVEE------FITLFKIQGDEVLRLVFSEDRVFG 374

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           PY T  G   + I  +      I  +  L       K++   + + +KL   A I  
Sbjct: 375 PYRTAGGYAVVYIEKRSFDSKNIKNRGQLEDSLLNAKLDSLVSLFAEKLAEEADIQI 431


>gi|307545440|ref|YP_003897919.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halomonas elongata
           DSM 2581]
 gi|307217464|emb|CBV42734.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halomonas elongata
           DSM 2581]
          Length = 270

 Score = 66.6 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/292 (8%), Positives = 68/292 (23%), Gaps = 43/292 (14%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKK 87
           + I      A +S I   +   +I + +I++ +             K A   ++ E L +
Sbjct: 4   IAIEQLPGGATASSI--RVGETLIEEDEIAREMQYHPADSAGDAHFKAARALVVRELLCQ 61

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           +           +                 E   +   +         +          +
Sbjct: 62  RAEHLGLAGDSQDDSEAAIAALLDRELEVPEPTEADCRRFHAAHPERFRE------PTRL 115

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
                +L     + E      +     + +       F+                     
Sbjct: 116 EVRHVLLAAAPDDAEARDAGYRQGRRLIEQLTEHPERFT--------------------- 154

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN-PYVTQKG 266
                       ++ ++       G+  +L      P+    L+       + P  ++ G
Sbjct: 155 ---------ELAQRHSACPSKDQGGELGWLQPGQTVPELDRALQHLPVGLHDRPLASRYG 205

Query: 267 VEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
              + + D+R          +   +          +    Y+  L +   + 
Sbjct: 206 WHVV-VIDRRVEGREPAFERVVDRVRHCLREQASRRALRHYLLALVAEIGVK 256


>gi|328465802|gb|EGF36990.1| protein export protein [Listeria monocytogenes 1816]
          Length = 266

 Score = 66.6 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/296 (9%), Positives = 81/296 (27%), Gaps = 40/296 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +L +  ++ + S  +      +  T +   +T  ++   +          +    
Sbjct: 1   MKKKLILGLVMMMALFSLAACGGGGDVVKT-DSGDVTQDELYDAMK--------DKYGSE 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            VQ+L  E +   + + S    D            +        +              +
Sbjct: 52  FVQQLTFEKILGDKYKVSDEDVD------------KKFNEYKSQYGDQFSAVLAQSGLTE 99

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    Q  +  +V+          +  +    +                +          
Sbjct: 100 KSFKSQLKYNLLVQKATEANTDTSDKTLKKYYET---------------WQPDITVSHIL 144

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLK--K 252
              + + K+ E+      K  +  +++++      + G+        + P F+      K
Sbjct: 145 VADENKAKEVEQKLKDGAKFADLAKEYSTDTATKDNGGQLAPFGPGKMDPAFEKAAYALK 204

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA-QNTPTKIEKHEAEYVKK 307
           ++ + + P  TQ G   I +            K  + A         ++  + +KK
Sbjct: 205 NKGDISAPVKTQYGYHIIQMDKPATKTTFEKDKKAVKASYLESQLTTENMQKTLKK 260


>gi|121997086|ref|YP_001001873.1| NifZ family protein [Halorhodospira halophila SL1]
 gi|121588491|gb|ABM61071.1| NifZ family protein [Halorhodospira halophila SL1]
          Length = 321

 Score = 66.6 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 45/161 (27%), Gaps = 9/161 (5%)

Query: 159 LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK---- 214
            + ++     +      R+         I  N    +   Q+    AE+   +L      
Sbjct: 152 TDEDVERFYHENPERFRRDETRTVRHLLITINDDFPENTRQRAWARAEKLTGKLAADPRG 211

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAIC 273
                E+ +     +  G    +    LH +    L + +      P  T  G+  + +C
Sbjct: 212 FAAAAERHSECPSALHGGLVGRVPRGQLHEELDAALFEMAAGEVRGPVETAMGLHVL-LC 270

Query: 274 DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           +         L   L  +      E+   +     R  A I
Sbjct: 271 ETIHPPDVAPLDDELRERIRGALQEQRARQVQ---RDRARI 308


>gi|300694578|ref|YP_003750551.1| isomerase [Ralstonia solanacearum PSI07]
 gi|299076615|emb|CBJ35952.1| putative isomerase [Ralstonia solanacearum PSI07]
          Length = 278

 Score = 66.6 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/286 (11%), Positives = 80/286 (27%), Gaps = 54/286 (18%)

Query: 42  IRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           +  T+NG  +T   + + IA   +Q    ++ +   Q+LI   L +Q+  K+        
Sbjct: 32  VIATVNGTPVTQEQLDRVIAQSGVQANP-QIAQALKQQLIARELFRQQAAKNPAYEKLPV 90

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
           V                                       +I    +K++        E 
Sbjct: 91  VKQAMQ-----------------------------EAHDAAITQAWLKDNIKPAPVTDEQ 121

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
                   + ++  +EY    +         Q    +++                   ++
Sbjct: 122 VKARYDAIVASLGDKEYKAHVIQLGDDVTAAQVLAQLKQ-----------GGDFAKLAQQ 170

Query: 222 FASKIHDVSIGKAQYL---------LESDLH-PQFQNLLKKSQNNTT-NPYVTQKGVEYI 270
           +++  + V  G   ++            +L  P  + +   +   T+  P         +
Sbjct: 171 YSTAPNKVRGGDMDWVSFKVPAEEGKTQNLPLPLAREIAALAVGATSTAPVEVGSQRYLV 230

Query: 271 AICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            +   R   +     +K  +       ++E+   + V  L   A +
Sbjct: 231 KVDAARPTQVPAYDVVKPAIRQALETAELERVTVQVVGGLLKQAKV 276


>gi|319761234|ref|YP_004125171.1| ppic-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
           denitrificans BC]
 gi|317115795|gb|ADU98283.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
           denitrificans BC]
          Length = 275

 Score = 66.6 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 14/167 (8%), Positives = 48/167 (28%), Gaps = 8/167 (4%)

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL----RL 212
              E            +      +R            +   +++R +             
Sbjct: 96  EPSEEACRRYHAAHPTLHGEGERLRLRHVLFAVTPGVDVKQLRQRAESVLLDLRCADDGG 155

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ--NNTTNPYVTQKGVEYI 270
            +      ++++       G+  +L ++D  P+F   +         +    ++ G+  +
Sbjct: 156 VRFAEAARQWSNCPSGQQGGELGWLTQADCAPEFAREIFGKAEVGVLSRLVHSRFGLHVV 215

Query: 271 AICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            +C++          ++A ++             +Y++ L   A + 
Sbjct: 216 EVCEREAGRALVFEEVQASVALLLRQQAWINALRQYLQLLAGAAEVE 262


>gi|294507824|ref|YP_003571882.1| PPIC-type PPIASE domain protein [Salinibacter ruber M8]
 gi|294344152|emb|CBH24930.1| PPIC-type PPIASE domain protein [Salinibacter ruber M8]
          Length = 685

 Score = 66.6 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 13/109 (11%), Positives = 33/109 (30%), Gaps = 4/109 (3%)

Query: 207 ESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVT 263
           E R           +++         G    +    L P  +  +    S    +    T
Sbjct: 295 EIRDGPLSFAAAAREYSQDRQSASEGGALGEVTPRALPPPLRKTVAALDSAGAVSGIVQT 354

Query: 264 QKGVEYIAICDKRDLGGEIALKAYLSAQNTPT-KIEKHEAEYVKKLRSN 311
           + G   + + D+ +        + L  +     + E+  A + + +R+ 
Sbjct: 355 RFGYHLLKLIDRSERPSFDEAYSELKDRLVGQPRAEERTAAFARTVRAE 403



 Score = 50.4 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/316 (7%), Positives = 68/316 (21%), Gaps = 55/316 (17%)

Query: 8   SLSDFIKLLTTYFVLIIFCIVPIVS------YKSWAMSSRIRTTINGEVITDGDISKRIA 61
           S+    + +  +F+ ++                +      I        +T  ++     
Sbjct: 19  SMIRLGRTVGVFFLAVLGMACSSGPEATEVPSSAPPPDDTIVARYADTTLTLAELDSA-- 76

Query: 62  LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
                                                S      F+    +  L      
Sbjct: 77  -----------------------FVDAAGGPQAAADSSLRAYRDFLDRYLHFRLKVRAAR 113

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
                              +   P +++ +          E                   
Sbjct: 114 DAGLDTLPRIRREVHDYRQERARPQLLRTEVYAPLARTLYERRTQAVD------------ 161

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS------IGKAQ 235
                I      +     +  +   +S  R     +   + +      +       G+  
Sbjct: 162 VSHILIRPTSSSDTLAAYREAQAIADSVGRGVPFGDLALRNSDAPAARTEGRRGYRGRLG 221

Query: 236 YLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP 294
           YL   D+   F++ +       T++ + T+ G   + + D+R     +     L+     
Sbjct: 222 YLQAGDIVEPFEDRMYAVPPGGTSDIFRTKFGYHILKVHDRRPAAQPV----ELAHILRR 277

Query: 295 TKIEKH-EAEYVKKLR 309
            + +       +  LR
Sbjct: 278 PQGDSATSRRLLDSLR 293


>gi|242280654|ref|YP_002992783.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           salexigens DSM 2638]
 gi|242123548|gb|ACS81244.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           salexigens DSM 2638]
          Length = 93

 Score = 66.6 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 1/80 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNT 257
           ++   D ++            +K +S       G         + P+F  ++        
Sbjct: 14  EQTCLDLKKQIQDGADFGEVAKKHSSCPSGQRGGDLGEFRPGQMVPEFDTVVFNEAVGEV 73

Query: 258 TNPYVTQKGVEYIAICDKRD 277
             P  TQ G   + I  + D
Sbjct: 74  HGPVKTQFGYHLLIIDSRED 93


>gi|146281286|ref|YP_001171439.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Pseudomonas
           stutzeri A1501]
 gi|145569491|gb|ABP78597.1| probable peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Pseudomonas stutzeri A1501]
          Length = 344

 Score = 66.6 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/174 (9%), Positives = 54/174 (31%), Gaps = 5/174 (2%)

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITV-REYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
           +++ +  L   +            +          R +L + P +  + +   +++    
Sbjct: 158 LIEQEVPLPLADEAACQQYYNGNRQRFFSAPLLAARHILLACPADDAEARSLAREQALGL 217

Query: 206 EESRLRLPK-DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVT 263
            +     P+       + ++       G    + +    P+F+  L +        P  +
Sbjct: 218 LQQLQAAPQRFAELALQHSACPSKEQGGALGQISKGQTVPEFERQLFRLPVGLCQQPLES 277

Query: 264 QKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           + G   + +  + +        +   + A+      +   ++Y++ L   A I 
Sbjct: 278 RYGYHLVFVDQRIEGEQLPYEIVAGTIRAELNQRVWQIGVSQYLQNLVGAANIE 331


>gi|83646167|ref|YP_434602.1| parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC
           2396]
 gi|83634210|gb|ABC30177.1| Parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC
           2396]
          Length = 316

 Score = 66.6 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/316 (11%), Positives = 90/316 (28%), Gaps = 47/316 (14%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +F   + F K    +   +   +           ++++   +NG  I+   ++  +A   
Sbjct: 1   MFLHRTSFPK--FVFLAALTGSLAGCGGAGEATDATQVVAKVNGSEISIHQLNAILAKQP 58

Query: 65  LQKINGEL-EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
            Q ++ +     A+ EL+ + +   +  +  +    + V                     
Sbjct: 59  AQGVSSDTARARALDELVEQQVAYDKAVELKLDRSPDVVMAI------------------ 100

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE--YLIR 181
                       + +    I    ++          + EI    Q+   +      Y ++
Sbjct: 101 ------------ESMKKSIIARAYLQQVIGALSQPSQEEIHQYYQEHPALFAERKLYSLQ 148

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
            +     D  L             E+    L  +  +    A+      IG         
Sbjct: 149 EIAIEPRDELLAPLRNKVGNAGQLEDIVAWLKAEGVQYRVNAANRSAEQIGL-------- 200

Query: 242 LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAIC-DKRDLGGEIALKAYLSAQNTPTKIEKH 300
                  + +      T  +        + +   ++    E   K  ++      K++K 
Sbjct: 201 --ELLTQVARLEDGAMT-LFQGPNNYLVVRVAASQKRPVSEEDAKPRITQFLHNRKVKKA 257

Query: 301 EAEYVKKLRSNAIIHY 316
             + V++L+S+A I Y
Sbjct: 258 VTDEVERLKSSAAIEY 273


>gi|229073881|ref|ZP_04206965.1| Foldase protein prsA 1 [Bacillus cereus F65185]
 gi|228709250|gb|EEL61340.1| Foldase protein prsA 1 [Bacillus cereus F65185]
          Length = 286

 Score = 66.6 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/205 (9%), Positives = 53/205 (25%), Gaps = 7/205 (3%)

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
           D     D +        +     S    + + +   +    +        +         
Sbjct: 72  DKYKVSDDETKKKVDELKKEMGDSFKSYLTQKNVRNEDELKDKLKTQMAFEKAIKASITE 131

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYL 237
                 +             +K  K+ +E            ++ +         G+   L
Sbjct: 132 KEIKDYYKPILKVSHILVKDEKMAKEIKEKINNGEDFTTLAKEHSEDPGSKEKGGELGEL 191

Query: 238 LESDL----HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNT 293
               +        +   K      + P  +  G   I + +K++L      K  ++ +  
Sbjct: 192 NAFQMDRMDPKFKEATYKLEAGQVSEPIKSSFGYHIIKMTEKKELKTFNQEKENINKELE 251

Query: 294 PTKI--EKHEAEYVKKLRSNAIIHY 316
             ++  ++ + ++ K L   A I  
Sbjct: 252 AKRLTDQQWQQKFFKDLFKQADIKI 276


>gi|255318960|ref|ZP_05360185.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens
           SK82]
 gi|262378304|ref|ZP_06071461.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens
           SH164]
 gi|255303977|gb|EET83169.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens
           SK82]
 gi|262299589|gb|EEY87501.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens
           SH164]
          Length = 623

 Score = 66.6 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 51/398 (12%), Positives = 105/398 (26%), Gaps = 91/398 (22%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
                  +  ++ ++     L     V I  Y S      +  T+NG+ I+  ++     
Sbjct: 1   MESFRKVIKGWLGIVLLILFLTPLAFVGIEGYFSGGNKENVAATVNGQEISKKELESLTK 60

Query: 62  LLKLQK-----------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQ 108
             K Q                +++ A+  LI + L  Q+ EK GI+     +        
Sbjct: 61  SYKEQYLNFVNGDETLLNQPFIQQTALDHLIAQNLILQQAEKLGISLSDAQIEQMLAQQP 120

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN------------------ 150
             +  G  ++       +     +        Q     ++ +                  
Sbjct: 121 SFQQNGQFSQTLYENYLRSVGLTSQGLIANLRQDHALKMLNSTFVDYTLVSKVDMNQIAN 180

Query: 151 ----------------DFMLKYGNLEMEIPANKQKMKNITVREYLIRT------------ 182
                           ++       + +I    QK KN   +   +              
Sbjct: 181 LQTEQRTLFLSSIPLDEYKKNIQVSQQDIANYYQKHKNSFKQTAHVDVDYIVLSPEQVNT 240

Query: 183 --------VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK--------- 225
                    L     N ++ Q    KR            ++ N+ +K A++         
Sbjct: 241 KAAPVTDAELQQAYANFVEAQNKNAKREVKHILIATSDTRNENQAQKLANEVYAKIQGGT 300

Query: 226 -------------IHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIA 271
                              G  +          F + +L    N  + P  TQ G   I 
Sbjct: 301 NFAQAAAQYSDDIDSKTKGGLIESYQTGVYSEAFDKAVLGLKANQISQPVKTQYGYHIIQ 360

Query: 272 ICD-KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
                +++    A K+ L+A+   +K+     + V  L
Sbjct: 361 AQTLAQNIPSFEAEKSRLAAEIQKSKVANLFTDTVNSL 398


>gi|83814441|ref|YP_445914.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Salinibacter ruber DSM 13855]
 gi|83755835|gb|ABC43948.1| PPIC-type PPIASE domain protein [Salinibacter ruber DSM 13855]
          Length = 685

 Score = 66.6 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 13/109 (11%), Positives = 33/109 (30%), Gaps = 4/109 (3%)

Query: 207 ESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVT 263
           E R           +++         G    +    L P  +  +    S    +    T
Sbjct: 295 EIRDGPLSFAAAAREYSQDRQSASKGGALGEVTPRALPPPLRKTVAALDSAGAVSGIVQT 354

Query: 264 QKGVEYIAICDKRDLGGEIALKAYLSAQNTPT-KIEKHEAEYVKKLRSN 311
           + G   + + D+ +        + L  +     + E+  A + + +R+ 
Sbjct: 355 RFGYHLLKLIDRSERPSFDEAYSELKDRLVGQPRAEERTAAFARTVRAE 403



 Score = 49.3 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/316 (7%), Positives = 68/316 (21%), Gaps = 55/316 (17%)

Query: 8   SLSDFIKLLTTYFVLIIFCIVPIVS------YKSWAMSSRIRTTINGEVITDGDISKRIA 61
           S+    + +  +F+ ++                +      I        +T  ++     
Sbjct: 19  SMIRLGRTVGVFFLAVLGMACSSGPEATEVPSSAPPPDDAIVARYADTTLTLAELDSA-- 76

Query: 62  LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
                                                S      F+    +  L      
Sbjct: 77  -----------------------FVDAAGGPQAAADSSLRAYRDFLDRYLHFRLKVRAAR 113

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
                              +   P +++ +          E                   
Sbjct: 114 DAGLDTLPRIRREVHDYRQERARPQLLRTEVYAPLARTLYERRTQAVD------------ 161

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS------IGKAQ 235
                I      +     +  +   +S  R     +   + +      +       G+  
Sbjct: 162 VSHILIRPASSSDTLAAYREAQAIADSVGRGVPFGDLALRNSDAPAARTEGRRGYRGRLG 221

Query: 236 YLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP 294
           YL   D+   F++ +       T++ + T+ G   + + D+R     +     L+     
Sbjct: 222 YLQAGDIVEPFEDRMYAVPPGGTSDIFRTKFGYHILKVHDRRPAAQPV----ELAHILRR 277

Query: 295 TKIEKH-EAEYVKKLR 309
            + +       +  LR
Sbjct: 278 PQGDSATSRRLLDSLR 293


>gi|332974542|gb|EGK11462.1| peptidyl-prolyl cis-trans isomerase [Kingella kingae ATCC 23330]
          Length = 293

 Score = 66.6 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/297 (11%), Positives = 80/297 (26%), Gaps = 21/297 (7%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-----ELEKIAVQ 78
           +F  +         ++  +  T+NG  I   ++  R   ++ Q         EL +    
Sbjct: 6   LFAAISAALLTGSVLAQTVV-TVNGTKIDSSELDARAKFVQQQSQGKVQDTPELRQYIAN 64

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
           E+++ET+  QE ++  +   S           +      +            D       
Sbjct: 65  EVVLETVVTQEAKRLQLDKSSEYKTVEADALKQAREKGLDK---------QPDFKGNWAR 115

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
               +  DV   D   K    + ++      +K+       ++                 
Sbjct: 116 FQNQLLMDVYAQDVAKKNPVSDADVQKRYDDIKSRYHNTDEVQLGEIVTDKEDQAKAAIR 175

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +   K +     +       ++     +++ +      L +      F+ +    +   T
Sbjct: 176 ELGAKKSFADVAKKYSIDPAVKAGQPALNEYT--SLVDLKDGR-PKIFEAVQNLKKGEYT 232

Query: 259 -NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            N    +         DKR +         +         ++     V KL   A I
Sbjct: 233 RNAVKGEGIFVVFYANDKRKITV--PAFDQIRDNVRDELQQERVQAAVGKLMQQAKI 287


>gi|298372477|ref|ZP_06982467.1| ppic-type ppiase domain-containing protein [Bacteroidetes oral
           taxon 274 str. F0058]
 gi|298275381|gb|EFI16932.1| ppic-type ppiase domain-containing protein [Bacteroidetes oral
           taxon 274 str. F0058]
          Length = 650

 Score = 66.6 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/298 (10%), Positives = 75/298 (25%), Gaps = 45/298 (15%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           I+   V ++S    A  S I  T+    +T  D        +              + I 
Sbjct: 5   ILALTVIVISLVMNAQDSNILMTLGKNKVTKDDFEYLFLKNRTNVKTKP-------QTID 57

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           E L+  +  +  +               +                               
Sbjct: 58  EYLQTYKKFRLKVIDAEALGYDTLGSFRKEL----------------------------- 88

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
                     +    + + E    ++  +N+         +L    +   ++   V ++ 
Sbjct: 89  --DSYRNQMAIGYLTDKDKEKALIEEAYRNMQQDVEASHILLLLPQNATPEDTAKVYQKA 146

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH-PQFQNLLKKSQNNTTNPY 261
            +  +   +         +        + G   ++    +  P  + L        ++P 
Sbjct: 147 LNIIKRLKKENFRTVATAESDDVGTKDNGGYLGWITGQMMVYPVEKELYSLPIGKISSPI 206

Query: 262 VTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEA------EYVKKLRSNAI 313
            T  G   I + ++R   G++ +   L         E+             KL++ A 
Sbjct: 207 RTGYGYHIIKVTNRRQAVGKVKVAHILKQFPENATKEQRAKLKSEIYAIYDKLKNGAD 264



 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/170 (8%), Positives = 51/170 (30%), Gaps = 4/170 (2%)

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
                               +    +  +   +     +   + +  ++  I    +   
Sbjct: 201 KISSPIRTGYGYHIIKVTNRRQAVGKVKVAHILKQFPENATKEQRAKLKSEIYAIYDKLK 260

Query: 211 RLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGV 267
                 +  ++ +   +   S G         +   F+N     K++ + ++P  T  G 
Sbjct: 261 NGADFASMAKENSDDEMSANSGGVLNEFGVGRMVEVFENTAFGLKNKGDISSPIETPYGW 320

Query: 268 EYIAICDKRDLGGEIALKAYLSAQN-TPTKIEKHEAEYVKKLRSNAIIHY 316
             I + D++ +     +K+ +        + +  +  +V KL++     +
Sbjct: 321 HIIQLIDRKPVDSFEKMKSDIITHFGFDGRYDACKKSFVDKLKNEYDYKF 370


>gi|297568758|ref|YP_003690102.1| hypothetical protein DaAHT2_0779 [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924673|gb|ADH85483.1| hypothetical protein DaAHT2_0779 [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 296

 Score = 66.6 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/289 (11%), Positives = 74/289 (25%), Gaps = 45/289 (15%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSG 94
           + A       T++G  IT  D+   + L           +             +  + + 
Sbjct: 28  AAADEGMTVATVDGARITMADVRNEMEL-----RPEATRE-----------FFRAHDGAA 71

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
              DS        Q AR  GL  E                    A   +   +++ +   
Sbjct: 72  RFVDSLVTKEVLYQEARRRGLDQE----------PQLRRVIDDYARTLLVNTLIEQELAP 121

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
           K    E ++    +      +    +R     +            +  +      L    
Sbjct: 122 KVQFGEEDLQEYYRNNPEEFMTREKVRLSRIVVG---------SAEEAQQVRARLLADED 172

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS--QNNTTNPYV-TQKGVEYIA 271
                +  + +    + G   ++    L  +  +L        + ++P    +     I 
Sbjct: 173 FAAVAQDLSLEQETAAGGDLGFVERDALSEREAHLAFNVLGLGDISSPQELAENRFVVIK 232

Query: 272 ICDKRDLGGEIALKAYLSAQNTPTK----IEKHEAEYVKKLRSNAIIHY 316
           + D   L GE      +             +    ++V  L+ +  I +
Sbjct: 233 LTD---LQGETVPYEEIKNLLAQRMETFGRKAAFEDFVATLKQDRKIEF 278


>gi|115360188|ref|YP_777326.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria AMMD]
 gi|115285476|gb|ABI90992.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria AMMD]
          Length = 245

 Score = 66.6 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/283 (13%), Positives = 66/283 (23%), Gaps = 55/283 (19%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           +NG  IT   + + + L K       L      +LI   L +Q   K         V   
Sbjct: 4   VNGVPITQAQVDEAVRLSKAPDTPA-LRAALKNQLIARELFRQAALKQHYDTKPQVVAAV 62

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
               A                                        D +      + ++ A
Sbjct: 63  EQAKA-------------------------------LAMTQAYLRDQVKPVPVTDADVKA 91

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
               +           +V+     +  +                 +         +F+  
Sbjct: 92  RYDAIVATLGENEYKPSVIAVNDADTAK----------QIIARLRKGEDFGALAREFSKG 141

Query: 226 IHDVSIGKAQYL----------LESDLHPQFQNLLKKSQNNTT-NPYVTQKGVEYIAICD 274
                 G   ++           ++      + L+K  Q   T  P         +   D
Sbjct: 142 PSAAQSGALNWISFKTPIEAGHTQNWPQQLAEALVKLPQGGLTREPVQIGDMYWIVRADD 201

Query: 275 KR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           KR   +      K  L  Q     +EK  A+ V  L  NA I 
Sbjct: 202 KRQTQVPTFDQAKDTLRQQLEQVAVEKATAQVVADLIRNARIQ 244


>gi|289811437|ref|ZP_06542066.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 408

 Score = 66.6 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/161 (11%), Positives = 49/161 (30%), Gaps = 12/161 (7%)

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
           +    + +I A   +  +   +   IR  +                      ++  +   
Sbjct: 29  QAPVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAV---------LDALNKGED 79

Query: 215 DCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAIC 273
                ++ ++ I    + G   +L ES   P+ +N   K +   +    +  G     + 
Sbjct: 80  FATLAKEKSTDIISARNGGDMGWLEESATVPELKNAGLKEKGQISGVIKSSVGFLVARLD 139

Query: 274 DKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
           D +    +    ++  ++A+    K         +K+   A
Sbjct: 140 DIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDAA 180


>gi|320450789|ref|YP_004202885.1| peptidyl-prolyl cis-trans isomerase [Thermus scotoductus SA-01]
 gi|320150959|gb|ADW22337.1| peptidyl-prolyl cis-trans isomerase [Thermus scotoductus SA-01]
          Length = 307

 Score = 66.6 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/285 (9%), Positives = 61/285 (21%), Gaps = 27/285 (9%)

Query: 37  AMSSRIRTTINGEVITDGDISKRIALLKLQKING---ELEKIAVQELIVETLKKQEIEKS 93
           A    +   +  E IT      R  L     +        +     L        E    
Sbjct: 20  AQEDPVVAQVGPEHITKSQFELRFGLFAKSALRQLGLPDSEETRALLAQYRAPYLEALAE 79

Query: 94  GITFDSNTVNYFFVQHAR----------NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
                       F                     E     L+  G+ D    + L  +++
Sbjct: 80  ERALLLLARRQGFWPLPDSVEAQVAELVKAFPEEEALRKALEGAGVPDLATYRTLLAEAM 139

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
             + ++  +  +       + A                  +               +  K
Sbjct: 140 ALEALEAHYRTELKVSPAALKALWLLSPEYRHPALYCARHILVP----------TLEAAK 189

Query: 204 DAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPY 261
           +      +         + +       + G      E    P F+  L        + P 
Sbjct: 190 EVLARLAKGEAFAQVAREVSQDPGSKEAGGDLGCEPEGTYIPAFEKALLALKPGEVSPPV 249

Query: 262 VTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
            T+ G   I +   R +         ++ +      +K     V+
Sbjct: 250 GTEFGFHVILLE--RLVPPGRYPLEEVAEELAQGVKDKAWERLVR 292


>gi|296134820|ref|YP_003642062.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia
           K12]
 gi|295794942|gb|ADG29732.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia
           K12]
          Length = 282

 Score = 66.6 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/288 (11%), Positives = 78/288 (27%), Gaps = 46/288 (15%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKK 87
           + +    S A  +++   ++G  IT  +                                
Sbjct: 19  LTLSLALSCAAQAQVVLRVDGHPITLEE-------------------------------- 46

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
                +    D   V    V+      L A+   S   +        ++ L  Q++    
Sbjct: 47  -AEAVNPQAADQPQVRQQVVEQLVQQQLLADALKSVPPQAQARIEAGQKNLRRQALAQLS 105

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
            +        + E    A ++ + ++  R+Y +R ++   P          ++  +  + 
Sbjct: 106 AEAFLQAHPISQEAIRQAYEKHIADLPTRQYWLRWIVVKTP----------EEAKRVLDA 155

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ-FQNLLKKSQNNTTNPYVTQKG 266
            R             +   +    G   +  E  +  +    + K        P    + 
Sbjct: 156 LRGGKQTFTALALHHSIGQNAELGGALGWQSEQAMSAEVLGVVRKLQPGQVAGPIALGEN 215

Query: 267 VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           +  I +  +R           L  Q      +     +V++L  NA I
Sbjct: 216 LAIIQLVAERTPP--KPDFEQLKPQIEQQLRQAALQAHVQELAKNAKI 261


>gi|83745590|ref|ZP_00942648.1| Hypothetical Protein RRSL_04650 [Ralstonia solanacearum UW551]
 gi|207738877|ref|YP_002257270.1| ppic-type peptidyl-prolyl cis-trans isomerase protein [Ralstonia
           solanacearum IPO1609]
 gi|83727667|gb|EAP74787.1| Hypothetical Protein RRSL_04650 [Ralstonia solanacearum UW551]
 gi|206592248|emb|CAQ59154.1| ppic-type peptidyl-prolyl cis-trans isomerase protein [Ralstonia
           solanacearum IPO1609]
          Length = 278

 Score = 66.6 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 78/293 (26%), Gaps = 54/293 (18%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSG 94
           + A+   +   +NG  +T   + + IA    Q    ++ +   Q+LI   L +Q+  K+ 
Sbjct: 25  ADALPPGVIALVNGTQVTQAQLDRAIAQSGAQANP-QIAQALKQQLIARELFRQQAAKNP 83

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
                  V                                 Q      I    +K++   
Sbjct: 84  AYEKLPAVKQAM-----------------------------QEAHDAVITQAWLKDNIKP 114

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
                E         + ++  +EY  R +         Q    +++              
Sbjct: 115 APVTDEQVKARYDAIVASLGDKEYKARVIQLGDDVTAAQVLELLKQ-----------GGD 163

Query: 215 DCNKLEKFASKIHDVSIGKAQYL---------LESDLHPQFQNLLKKSQNNT--TNPYVT 263
                +++++  + V  G   ++            +L       +         T P   
Sbjct: 164 FAKLAQQYSTAPNKVRGGDMDWVSFKVPAEEGKTQNLPLPLAREIAALGIGATSTAPVEV 223

Query: 264 QKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                 + +   R   +     +K  +       ++E+   + V  L   A +
Sbjct: 224 GSQRYIVKVEAARPTQVPAYDTVKPAIRQALESAELERVTVQVVGGLLKQAKV 276


>gi|224536048|ref|ZP_03676587.1| hypothetical protein BACCELL_00912 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522331|gb|EEF91436.1| hypothetical protein BACCELL_00912 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 513

 Score = 66.6 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/301 (8%), Positives = 77/301 (25%), Gaps = 44/301 (14%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           ++ +   +I+ C+  +V    +A    +   ING+ I   +                +E+
Sbjct: 1   MIRSGLTIILLCLGLVV----FAQQDPVLMRINGKEILRSEFEYIYN---KNNALAGIEQ 53

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             + E +   +                          N  L      +            
Sbjct: 54  KTLSEYVDLFV--------------------------NFKLKVAAAEAAGLDTTRAFREE 87

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
            +    Q     +              +      +   I V                   
Sbjct: 88  LEGYRRQLAKAYLTDESVSELAARQVYDKMKANNRAGQIRVSHIFKFLPQTVTSHVLRSA 147

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-S 253
           +  +       +  +    +                     ++    +  +F++++    
Sbjct: 148 EARMDSLYAALQNGQADFDECVRNFSDEKKSF---------WVSWLQMPVEFEDVVFALK 198

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL-SAQNTPTKIEKHEAEYVKKLRSNA 312
           Q   + P+ T +G+  +   +++++     +K  +   Q+    +++     V+KL+   
Sbjct: 199 QGEISRPFFTPQGIHIVKAIERKEILPFEKVKDEIMRRQSRRYGMDRGTEALVEKLKKEY 258

Query: 313 I 313
            
Sbjct: 259 Q 259


>gi|219852695|ref|YP_002467127.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methanosphaerula
           palustris E1-9c]
 gi|219546954|gb|ACL17404.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methanosphaerula
           palustris E1-9c]
          Length = 93

 Score = 66.6 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 11/81 (13%), Positives = 31/81 (38%), Gaps = 1/81 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQN 255
             + + +D ++            +K++        G+  +  +  + P+F+ +  +  + 
Sbjct: 13  KTKDQAEDLKKQISAGGNFGELAKKYSECPSGKKGGELGWFGKGMMVPEFEKVAFEGKEG 72

Query: 256 NTTNPYVTQKGVEYIAICDKR 276
           +   P  TQ G   I I  ++
Sbjct: 73  DVVGPVKTQFGFHLIKILGQK 93


>gi|217977671|ref|YP_002361818.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocella
           silvestris BL2]
 gi|217503047|gb|ACK50456.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocella
           silvestris BL2]
          Length = 263

 Score = 66.6 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/281 (8%), Positives = 73/281 (25%), Gaps = 37/281 (13%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             T+N   I    I++     + +  +   E+ A   +I E L ++              
Sbjct: 3   IVTVNDMAIPAAAIAREAQNHEAESPDAAWEQAARALIIRELLLQRA------------- 49

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                              +             +    +++   +++ +      +  + 
Sbjct: 50  ------------------RALDLAAEPLVLDGAREADEEAMIRVLLEREVRTPTADESVC 91

Query: 163 IPANKQKMKNITVR--EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
                                 +     D+       +++      +   R  +  +   
Sbjct: 92  RRYYDNHRARFQTPDLFEPAHILFKVRRDDAAAYARAIERAEAVLAKLAERPDRFGDFAR 151

Query: 221 KFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT--NPYVTQKGVEYIAICDKRDL 278
             +        G+   +   D   +F+  L   +       P   + GV  + +  K   
Sbjct: 152 NLSDCPSGKEGGRLGQVALGDTTSEFETCLLAMEGGQICPTPVRARYGVHVLRLERKAPG 211

Query: 279 G--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
                 A++  ++A    +   +  A+Y+  L   A +  +
Sbjct: 212 QTLPFEAVRDRIAAYLEESSWRRAVAQYIALLAGQARVIGF 252


>gi|77918655|ref|YP_356470.1| peptidyl-prolyl cis-trans isomerase [Pelobacter carbinolicus DSM
           2380]
 gi|77544738|gb|ABA88300.1| peptidyl-prolyl cis-trans isomerase [Pelobacter carbinolicus DSM
           2380]
          Length = 649

 Score = 66.6 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/259 (9%), Positives = 62/259 (23%), Gaps = 12/259 (4%)

Query: 52  TDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
           T     + +    L     E  K      + +     E        D   V     ++  
Sbjct: 150 TSRAFERNMREQLLLGKVVEAIKQ--DAEVTDQDIDHEYRNRNEKIDLAFVKLAPGRYES 207

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
              ++ E   ++  +             I   +     ++        +  I     K K
Sbjct: 208 KVTVTDEALQAYFQENREDFRQP---EKIALRFVRFDPDNVAKDISVDDAAIQDYYDKHK 264

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRI---KDAEESRLRLPKDCNKLEKFASKI-H 227
           +    E  ++            ++   QK+    +   E               +     
Sbjct: 265 DQYWVEEQVKASHILFRITAGLDEDGRQKKRAAAQKVLEQARAGKDFAQLARTHSDDAGS 324

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGE--IAL 284
            +  G   Y     + P F+N+         ++   T  G   I    + +   +    +
Sbjct: 325 AIKGGALGYFTHGSMVPDFENVAFALKPGQISDLVETSMGYHIIKCEGRIEAQTKPLDDV 384

Query: 285 KAYLSAQNTPTKIEKHEAE 303
           +  + A        +   +
Sbjct: 385 RDDVRANLRKELARQDALD 403


>gi|32265604|ref|NP_859636.1| hypothetical protein HH0105 [Helicobacter hepaticus ATCC 51449]
 gi|32261652|gb|AAP76702.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 276

 Score = 66.6 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 81/299 (27%), Gaps = 36/299 (12%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGD---ISKRIALLKLQKINGELEKIAVQELI 81
                + S    ++ ++   T++G  ITD D   + + I      K++ + +++ + ELI
Sbjct: 5   LLATILFSLVCVSLQAKTYATVDGVAITDKDMEILKQSIPNFNYNKLSEQEKEMLINELI 64

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
              L  +  ++  +                N  +           Q    N  +     Q
Sbjct: 65  NRQLILKAAKQEKLDTSKEYT-DTINSIKDNLLIDLWTKKQANSTQVPTMNDAQLRKIYQ 123

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
               + +  +                             +     +       +   +  
Sbjct: 124 ENEGEFIDQE----------------------------GKARHILVKSESEAKEIIKELD 155

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT--N 259
                ++  +  +  N      +     + G       + + P F       +  T    
Sbjct: 156 KVGKAKAEAKFIELANAKSIDPASKQQKNGGDLGVFKRAGMDPMFSKAAFDLKPGTYTKE 215

Query: 260 PYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           P +TQ G   I +  K +         K  +        I+    + ++ LR+ A I  
Sbjct: 216 PVLTQFGYHIIYLERKSEPKVIPYKDAKKIIENSIKMQSIQGGMMQKIQALRAKAKIKI 274


>gi|241668931|ref|ZP_04756509.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254877463|ref|ZP_05250173.1| peptidyl-prolyl cis-trans isomerase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254843484|gb|EET21898.1| peptidyl-prolyl cis-trans isomerase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 470

 Score = 66.6 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 110/291 (37%), Gaps = 21/291 (7%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKING-------ELEKIAVQELIVETLKKQEIEK 92
           ++    +N + IT  ++ + +A  +    N        ++ + A+Q+LI +++  Q  E+
Sbjct: 53  NKTVAIVNSKPITSFELDQEVAKFEAMNPNSSFHSDSLQIRREALQDLIAQSVLLQLAER 112

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
           + I   +  ++      A   G+S E     ++  G+    +K+ +  Q +   + +   
Sbjct: 113 NNIIISNQQLDAAIKDIAAKNGVSVESLKLNVEASGMSFESYKKRIREQLMVSQLQQQAI 172

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
             +      EI    +K +         ++ Y ++ ++ ++PD+K   Q  +    K A 
Sbjct: 173 SQQVYVSPEEIQKYIKKHQEQFDREMAPIKLYTLKNLIVALPDSKKARQKKIDLFKKLAI 232

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQ-YLLESDLHPQFQNLLKK-SQNNTTNPYVTQ 264
                       +++F+   +    G     +    +   +++ +K   ++  + P++  
Sbjct: 233 AVNKGYIDFSEVVKQFSQAPNATYGGIVSQQVKFDSIPSMYRDYVKDLKEHQVSEPFIVN 292

Query: 265 KGVEYIAICDKRDLGGEIALKAY------LSAQNTPTKIEKHEAEYVKKLR 309
             ++ I I +  +    ++ K        +  +      E+     + + R
Sbjct: 293 HTLQMIYIDNIDEKAPMLSKKVTKYYVYAIEIKLDGGMTEEGAKSSLDRAR 343



 Score = 43.9 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 27/271 (9%), Positives = 73/271 (26%), Gaps = 9/271 (3%)

Query: 53  DGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
                + +A +KL      L             K    +K  I  +   +++  V    +
Sbjct: 191 QEQFDREMAPIKL-YTLKNLIVALPDSKKARQKKIDLFKKLAIAVNKGYIDFSEVVKQFS 249

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
              +A        +             ++ +    V   F++ +    + I    +K   
Sbjct: 250 QAPNATYGGIVSQQVKFDSIPSMYRDYVKDLKEHQVSEPFIVNHTLQMIYIDNIDEKAPM 309

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
           ++ +          I  +    +   +  +  A  +            K+       + G
Sbjct: 310 LSKKVTKYYVYAIEIKLDGGMTEEGAKSSLDRARLAIESGQDFTKVALKYNQDYDHAN-G 368

Query: 233 KAQYLLE-----SDLHPQFQNLLKKSQNNTTNPYVT-QKGVEYIAICDKRDLGGEIALKA 286
           K +++       +     F  L    +   + P+    K    +     ++      LK 
Sbjct: 369 KFRWVSRLDSPPAIPPAAFAKLETMKEGEVSEPFQADPKTWMIMKYTKVKEHDAAEELKE 428

Query: 287 Y-LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                     K ++    ++  ++ +A I  
Sbjct: 429 QKALEAIFSEKAQEVYKTWLTSMKDDAYIEI 459


>gi|315453564|ref|YP_004073834.1| major antigenic peptide PEB3\Peptidyl-prolylcis-transisomerase C
           [Helicobacter felis ATCC 49179]
 gi|315132616|emb|CBY83244.1| major antigenic peptide PEB3\Peptidyl-prolylcis-transisomerase C
           [Helicobacter felis ATCC 49179]
          Length = 291

 Score = 66.6 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/318 (11%), Positives = 89/318 (27%), Gaps = 42/318 (13%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDIS---KRIAL 62
               S  +  L  + VL    +  +         S +        IT+ D     +R   
Sbjct: 1   MVKKSVILAGLLGFGVLGATTLATVTFTGKKGGKSEVV------NITESDFDVLKQRNPN 54

Query: 63  LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
                +  + + + + + I   L ++E +K                   N   S E  S+
Sbjct: 55  FNFNNLQDKQKMVLLDQAISNLLIEREAKK------------------ENLEDSPEFKSN 96

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
               +             + I  + +           E ++       K+  V++   + 
Sbjct: 97  LASYKKQLLVEVWVKHRAEIIGKEQI----------PEDQLKQYYDTNKDRFVQQEA-QA 145

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
               +       +   +       +      K  N+     +  +  + G      +S +
Sbjct: 146 RHILVKTEADARRIISELNKVPKTKVEHEFIKIANRDSIDPNTKNTKNGGDLGKFQKSQM 205

Query: 243 HPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIE 298
            P+F + + +      T  P  T+ G   + +  K           K  +       + +
Sbjct: 206 TPEFSKAVFELRPGTYTKTPVKTEFGYHVVYLMHKSQPVTPTFAQAKQSIIGILKEQQFQ 265

Query: 299 KHEAEYVKKLRSNAIIHY 316
           ++    ++KLR   ++  
Sbjct: 266 EYVKGELEKLRKQVVVDI 283


>gi|160902886|ref|YP_001568467.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Petrotoga mobilis
           SJ95]
 gi|160360530|gb|ABX32144.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Petrotoga mobilis
           SJ95]
          Length = 558

 Score = 66.6 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/313 (11%), Positives = 96/313 (30%), Gaps = 32/313 (10%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDG---DISKRI--------A 61
           +K L   F +++   V I S     ++S+     +GE I +    ++ + +         
Sbjct: 1   MKKLLVVFGILVILSVSIFSESVAYLTSQ-----DGEQIHESYFLELDQLMGEYHNTLLN 55

Query: 62  LLKLQKINGELEKIAVQE------LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
           +L       +     +        L+     ++ +  +GIT D+  ++    Q      +
Sbjct: 56  MLSQNPQYDQYFNKPLDLISITDVLMEYKAMEKFLNDNGITLDATKISQETDQMYSQY-M 114

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
             E            + +F+ +++      +V+           E+E+            
Sbjct: 115 GNESTKQIFLMFFEKEEYFRGFVSSLVYRNEVINELRNYFSNFSEVELSTYVSDNLENFK 174

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
            E+    +   +  ++        +        +  +       +           G   
Sbjct: 175 NEFDTVKISRIVTVDESTANNLKSEI------LQNNISFTDAASKNSVDAQTASVGGLVG 228

Query: 236 YLLESDLHP-QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQN 292
           ++   D+    F+  L  +      P  +  G E + + DK+  +   E+     + +Q 
Sbjct: 229 WVKRGDISENIFEASLSSTPGEIIGPLSSPLGYEIVRVEDKKIYETADELLADEDIKSQL 288

Query: 293 TPTKIEKHEAEYV 305
           T + ++     + 
Sbjct: 289 TASYVDYQINNWY 301


>gi|332290245|ref|YP_004421097.1| peptidyl-prolyl cis-trans isomerase [Gallibacterium anatis UMN179]
 gi|330433141|gb|AEC18200.1| peptidyl-prolyl cis-trans isomerase [Gallibacterium anatis UMN179]
          Length = 621

 Score = 66.2 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/388 (10%), Positives = 92/388 (23%), Gaps = 88/388 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI---- 56
           M  K+       +  +    + I F +  +  Y   +  +    T+NG  I+        
Sbjct: 1   MMEKLRGYTHSMVWKVLMSVIAISFVLSGVAGYL-ISRQNTSAATVNGVEISQRLFQQQY 59

Query: 57  ------------SKRIALLKLQKINGELEKIAVQELIVETLKKQEI-------------- 90
                        K  A+    +    L    +  LI + L +Q                
Sbjct: 60  QSQYQQLAMQMGDKFAAVADSAEFTNGLRHSVLDRLIDDELLRQYSKELGLGVGDEAIKQ 119

Query: 91  ---EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
                     D    N  + Q   N  L+ + ++  + +  +        LA   +    
Sbjct: 120 AIVMNPAFQKDGQFDNAVYQQLLANNNLTPDQYAEIVRQDLVLSQLMGSLLASDFLTEAQ 179

Query: 148 VKNDFM-------------------LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
            +                        K    + EI       K       L++     + 
Sbjct: 180 QQQFVKLFFQKRSVRLATFPVADLAAKQTISDQEIEKYYNDHKAAFATPELVKVQYIDVN 239

Query: 189 DNKLQNQGFV-------------------------------QKRIKDAEESRLRLPKDCN 217
            +KL     V                               Q    D      +      
Sbjct: 240 KDKLAKDLQVSDVEVAQYYQDNKSQFMGQAKQHIAHIQVNTQAEADDIYNKLQQGADFAE 299

Query: 218 KLEKFASK-IHDVSIGKAQYLLESDLHPQFQ-NLLKKSQNNTTNPYVTQKGVEYIAICDK 275
             +K++   +  V+ G   +++   L   F+      +    + P         I +  +
Sbjct: 300 LAKKYSIDRLTAVNGGDLSWVVAGQLPKAFEAAADNTAVGAYSKPTKVDDKYHIIKVLAR 359

Query: 276 RDLG--GEIALKAYLSAQNTPTKIEKHE 301
            +        +K+ ++        E+  
Sbjct: 360 NEATVLPLEEVKSRITDLVRQDLAERKY 387


>gi|89095401|ref|ZP_01168315.1| peptidyl-prolyl cis-trans isomerase C [Oceanospirillum sp. MED92]
 gi|89080339|gb|EAR59597.1| peptidyl-prolyl cis-trans isomerase C [Oceanospirillum sp. MED92]
          Length = 93

 Score = 66.2 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 9/82 (10%), Positives = 23/82 (28%), Gaps = 1/82 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +++    +             ++ +S       G         + P+F + +      
Sbjct: 12  DTEEQCNQIKAEIEAGLDFAEAAKQHSSCPSSAQGGDLGSFGRGQMVPEFDKAVFTGEVG 71

Query: 256 NTTNPYVTQKGVEYIAICDKRD 277
               P  TQ G   + +  + D
Sbjct: 72  VVQGPIQTQFGFHLLEVTSRED 93


>gi|330823101|ref|YP_004386404.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
           denitrificans K601]
 gi|329308473|gb|AEB82888.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
           denitrificans K601]
          Length = 275

 Score = 66.2 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 14/167 (8%), Positives = 48/167 (28%), Gaps = 8/167 (4%)

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL----RL 212
              E            +      +R            +   +++R +             
Sbjct: 96  EPSEEACRRYHAAHPTLHGEGERLRLRHVLFAVTPGVDVKQLRQRAESVLLDLRCDDDGG 155

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ--NNTTNPYVTQKGVEYI 270
            +      ++++       G+  +L ++D  P+F   +         +    ++ G+  +
Sbjct: 156 VRFAEAARQWSNCPSGQQGGELGWLTQADCAPEFAREIFGKAEVGVLSRLVHSRFGLHVV 215

Query: 271 AICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            +C++          ++A ++             +Y++ L   A + 
Sbjct: 216 EVCEREAGRALAFEEVQASVALLLRQQAWINALRQYLQLLAGAAEVE 262


>gi|237756622|ref|ZP_04585137.1| SurA N- domain family [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691220|gb|EEP60313.1| SurA N- domain family [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 290

 Score = 66.2 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/308 (14%), Positives = 104/308 (33%), Gaps = 31/308 (10%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMS----SRIRTTINGEVITDGDISKRIALLKLQKIN 69
            +L  + +L+   +    +            ++   +NGE +   D+        ++   
Sbjct: 5   SILNVFLMLLTVLLFTFNNKAKAEDGYRLFDKVVLVVNGEPVLKSDLEFAKNWYNIKDD- 63

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG-LSAEDFSSFLDKQG 128
               K A +++I   L  Q+  + GI+     ++   +  A+  G    E F   L+  G
Sbjct: 64  ----KEAEEKIINSFLLAQQARRMGISVSPREIDNAVLNIAKANGIDDLETFKKKLEDSG 119

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
           I  +  K++LA   +   ++      K     +E              +  ++TV     
Sbjct: 120 ISYSKLKEFLARDMLANRLLHLYMREKASKGIIE------------GDKEDVKTVRLIFI 167

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQ 247
                +   V  +     +  L          K++       + G    + + DL  +  
Sbjct: 168 SKNRPDYQEVLSK----LDKELNKNNFSEFASKYSDDKFTAENKGLIGEIKKGDLVKELD 223

Query: 248 NLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
             +   +        T +G+ +I I        ++  KA +S +    K++K     ++K
Sbjct: 224 EAIFSHKAGDIFKVETNEGMYFIYIE---KEENKLTPKAEMSEK-EVEKLKKEYDLLLRK 279

Query: 308 LRSNAIIH 315
           L+  A+I 
Sbjct: 280 LKERAVIQ 287


>gi|254369748|ref|ZP_04985758.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122707|gb|EDO66836.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 469

 Score = 66.2 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 109/273 (39%), Gaps = 15/273 (5%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-------ELEKIAVQEL 80
           V +       + ++    +N   IT  ++ + +A L+  + N        +L++ A+Q+L
Sbjct: 40  VSMNVSDKKYLVNKTVAIVNSRPITSFELDQELAKLEAMQPNSAFNTDPLKLKRQALQDL 99

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I +++  Q  E++ I   +  ++      A   G+S E     ++  G+  + +K+ +  
Sbjct: 100 ISQSVLLQLAERNNIMISNQQLDSAIQDIAAKNGVSVESLKLNVEAAGMSFDSYKKRIID 159

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV------REYLIRTVLFSIPDNKLQN 194
           Q +   + +     +      EI    +K +          + Y ++ ++ ++PD+K   
Sbjct: 160 QLMISQLQQQAIAQQVYVSPEEIQKYIKKHQKEFDREMSPVKLYTLKNLIVALPDSKKAR 219

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKK 252
           Q  +    K A             +++F+   + VS G     ++ D  P    + + + 
Sbjct: 220 QKKIDLFKKLALAVNNGSIDFSEIVKQFSQAPNAVSGGIVSQQVKFDSIPDIYKEYIKEL 279

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK 285
             +  + P++    ++ I I +  +    ++ K
Sbjct: 280 KNHQVSQPFIVNHTLQMIYIDNIDEKAPILSKK 312



 Score = 49.3 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/271 (9%), Positives = 78/271 (28%), Gaps = 9/271 (3%)

Query: 53  DGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
             +  + ++ +KL  +   +  +   +   +       + +    + +      V+    
Sbjct: 190 QKEFDREMSPVKLYTLKNLIVALPDSKKARQKKIDLFKKLALAVNNGSIDFSEIVKQFSQ 249

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
              +          +        +    +      V   F++ +    + I    +K   
Sbjct: 250 APNAVSGGIVSQQVKFDSIPDIYKEYIKELKNHQ-VSQPFIVNHTLQMIYIDNIDEKAPI 308

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
           ++ +          I  +   N+   +  ++ A+ +     +      K+       + G
Sbjct: 309 LSKKVTKYYVYAIEIKLDGGMNEDGAKSSLERAKLAIESGQEFTKVALKYNQDYDHPN-G 367

Query: 233 KAQYLLESDLHP-----QFQNLLKKSQNNTTNPYVTQK-GVEYIAICDKRDLGGEIALKA 286
             +++ E D  P      F  L +  +N  + P+         I     ++      LK 
Sbjct: 368 NFRWVSELDSPPSLPPAAFAQLKQLKENELSEPFQADGRTWMIIKYTKTKEYDAAEQLKE 427

Query: 287 Y-LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                     K +K    ++  ++ +A I  
Sbjct: 428 QKALEAIFSEKAQKIYKTWLTSMKDDAYIEI 458


>gi|161522420|ref|YP_001585349.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans ATCC 17616]
 gi|189348704|ref|YP_001941900.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia multivorans
           ATCC 17616]
 gi|160345973|gb|ABX19057.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans ATCC 17616]
 gi|189338842|dbj|BAG47910.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia multivorans
           ATCC 17616]
          Length = 262

 Score = 66.2 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 51/172 (29%), Gaps = 7/172 (4%)

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
            +          +      +      R  ++                 +++R + A    
Sbjct: 79  RELTHVPEPDRADCERYYAQHPARFRRNDIVYASHVLFAVTDRVPLAPLRQRAERALADV 138

Query: 210 LRLPKDCNK-LEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ--NNTTNPYVTQKG 266
           +  P   +      ++       G    +L  D  P+F+  L  +           T+ G
Sbjct: 139 VAAPDTFDAVARASSNCPSAQVGGSLGQVLRGDTVPEFEAALFDTDGLGVLPKLVNTRFG 198

Query: 267 VEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
              + I D+R   D     A+ A ++A  T    ++   +YV  L   A I 
Sbjct: 199 FHIVRI-DRRVAGDTVPFDAVAAQIAAHLTARVRQRAMRQYVAILAGGARIE 249


>gi|303249065|ref|ZP_07335308.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           fructosovorans JJ]
 gi|302489530|gb|EFL49472.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           fructosovorans JJ]
          Length = 654

 Score = 66.2 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/232 (8%), Positives = 55/232 (23%), Gaps = 9/232 (3%)

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
                    +   + Y   +                       + F     I+  + +  
Sbjct: 176 ARSIFDFMREQAVIKYIMFKAEDFDKGITPTDEQIKAYYEARKDQFATPAKIKIDYVEFT 235

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
                      + +I A  +  +    R   ++   F I       +  V       ++ 
Sbjct: 236 PKALAQPDKVTDADIEAYYKANQKKYARPEQVKVRHFLIMLPADAPKSAVDAATAKLKDI 295

Query: 209 RLRLPKDCNKLEKFASKIHDVSI---GKAQYLLESDLHPQF----QNLLKKSQNNTTNPY 261
             +L              ++          +L +  L  +F    +          + P 
Sbjct: 296 AAKLKAGAAFASLLPKNPNNADGLIGEDWAWLPKGSLPKEFGPFEEKAFSLKNGEISEPV 355

Query: 262 VTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            T  G+  I   +++  G      +K  +  +    K      + +  ++  
Sbjct: 356 RTALGLHLIQAGERQAAGERPLSEVKDDIREELAERKASDKLTQSLDNMQDK 407



 Score = 52.4 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/234 (7%), Positives = 66/234 (28%), Gaps = 15/234 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +      +   +    ++++F    + S++       +  TI+G+ +   D  K  
Sbjct: 1   MLDPMRKYAQSWGIKIVFGLIILVFVFWGVGSFRGDKA--TVLATIDGQPVLIKDYEKAY 58

Query: 61  ALLKLQKINGE------------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
              +    N                      ++   L +++ +K G++  ++ +     +
Sbjct: 59  REAQRLVKNKNPDITDKELQDGGFRWQVFSNMVTSRLLEEQAKKLGVSVSADELRAEIAK 118

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
                  S +  +   +     ++              +++               A  +
Sbjct: 119 IPAFQDKSKKFDAKRYENLLRANDVTPGEFEADFRQNLLLE-KLAGFVSLPASVSEAEAR 177

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            + +    + +I+ ++F   D         ++     E  + +          +
Sbjct: 178 SIFDFMREQAVIKYIMFKAEDFDKGITPTDEQIKAYYEARKDQFATPAKIKIDY 231


>gi|148359402|ref|YP_001250609.1| hypothetical protein LPC_1300 [Legionella pneumophila str. Corby]
 gi|148281175|gb|ABQ55263.1| hypothetical protein LPC_1300 [Legionella pneumophila str. Corby]
          Length = 624

 Score = 66.2 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/197 (10%), Positives = 56/197 (28%), Gaps = 7/197 (3%)

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
                          F     +   +  +  +D   +      EI +  ++ K+  +   
Sbjct: 203 SEDDIKSYYNQHHKKFMTSEQVTLDYVLLTMHDIKSQIKISPDEIKSYYEENKSNYLTPA 262

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV-----SIGK 233
             R         +   +       + A+E    L K   + +K+ +   D      + G 
Sbjct: 263 QWRVAHILFAVPENATKEEQDSIKQKADEVYSDLKKHPEQFDKYVASKSDDKLSIANKGI 322

Query: 234 AQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQ 291
             ++                    + P  T+ G E   +   + +  +    ++  +  Q
Sbjct: 323 LPWITGGQNEYGRVLSNLTRPGEISTPVQTKYGYEIFKLIAYKPVTTKSLQEVENIIKDQ 382

Query: 292 NTPTKIEKHEAEYVKKL 308
            T    +   A+ +++L
Sbjct: 383 LTSDMAQAKYAQVLEQL 399



 Score = 60.8 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 57/218 (26%), Gaps = 8/218 (3%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+   +   +  L    + I F +  +  Y      S  +  +N + IT        
Sbjct: 1   MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSLQISDAKVIVNDKPITMQAFETNY 60

Query: 61  ALLKLQK--------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
              + Q+            L+   + ++I   +  Q   K G        N   VQ  + 
Sbjct: 61  RRTRAQQDLPQMTAADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQANAAIVQIPQF 120

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
                     +           + +         + +  F     +  +     +     
Sbjct: 121 QEDGHFSAQRYQQALSGALFTPETFQNEVRQGMLLNQQRFAFMGTSFALSDEIKRFVRLY 180

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
           +  R+Y   TV     + + +      K   +    + 
Sbjct: 181 MQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKF 218


>gi|296107448|ref|YP_003619148.1| peptidyl-prolyl cis-trans isomerase D [Legionella pneumophila
           2300/99 Alcoy]
 gi|295649349|gb|ADG25196.1| peptidyl-prolyl cis-trans isomerase D [Legionella pneumophila
           2300/99 Alcoy]
          Length = 624

 Score = 66.2 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/197 (10%), Positives = 56/197 (28%), Gaps = 7/197 (3%)

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
                          F     +   +  +  +D   +      EI +  ++ K+  +   
Sbjct: 203 SEDDIKSYYNQHHKKFMTSEQVTLDYVLLTMHDIKSQIKISPDEIKSYYEENKSNYLTPA 262

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV-----SIGK 233
             R         +   +       + A+E    L K   + +K+ +   D      + G 
Sbjct: 263 QWRVAHILFAVPENATKEEQDSIKQKADEVYSDLKKHPEQFDKYVASKSDDKLSIANKGI 322

Query: 234 AQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQ 291
             ++                    + P  T+ G E   +   + +  +    ++  +  Q
Sbjct: 323 LPWITGGQNEYGRVLSNLTRPGEISTPVQTKYGYEIFKLIAYKPVTTKSLQEVENIIKDQ 382

Query: 292 NTPTKIEKHEAEYVKKL 308
            T    +   A+ +++L
Sbjct: 383 LTSDMAQAKYAQVLEQL 399



 Score = 60.8 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 57/218 (26%), Gaps = 8/218 (3%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+   +   +  L    + I F +  +  Y      S  +  +N + IT        
Sbjct: 1   MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSRQISDAKVIVNDKPITMQAFETNY 60

Query: 61  ALLKLQK--------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
              + Q+            L+   + ++I   +  Q   K G        N   VQ  + 
Sbjct: 61  RRTRAQQDLPQMTAADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQANAAIVQIPQF 120

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
                     +           + +         + +  F     +  +     +     
Sbjct: 121 QEDGHFSAQRYQQALSGALFTPETFQNEVRQGMLLNQQRFAFMGTSFALSDEIKRFVRLY 180

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
           +  R+Y   TV     + + +      K   +    + 
Sbjct: 181 MQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKF 218


>gi|206603475|gb|EDZ39955.1| Probable peptidil-prolyl cis-trans isomerase [Leptospirillum sp.
           Group II '5-way CG']
          Length = 289

 Score = 66.2 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/287 (11%), Positives = 72/287 (25%), Gaps = 50/287 (17%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKL-QKINGELEKIAVQELIVETLKKQEIEK 92
            S  +   +   +    I+  D+ K++  + L    +  +    + +++  +L   E  K
Sbjct: 24  SSAPLPDSVLAKVGDTTISQADLKKKLDSMGLASSKDPNVTSELLNQMVDNSLLAMEARK 83

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
            G+                                            +          D 
Sbjct: 84  EGLDKTPEFKKK----------------------------MHAYETKLLRKALLKKDVDD 115

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
            +K  + ++    NK +          +R V+F       ++   ++K            
Sbjct: 116 KVKVTDSDIMNYYNKHQKDIKQPGYVDVRQVVFPDEKTAKRDFSLLKKNGG--------- 166

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIA 271
                    F         G    + E  + P+F        + + T P   + G+ Y  
Sbjct: 167 ---------FKKLTKMFKGGPVGKIYEGTVPPKFVSFFFGVPEGSITGPIPLKDGIHYFK 217

Query: 272 ICD--KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           I    K         +  +       + +      V  LRS   +  
Sbjct: 218 IDRSVKGVQLTLDQARDGIRNYLRNRQNKTIYQTLVNHLRSTTTVQI 264


>gi|86137742|ref|ZP_01056318.1| hypothetical peptidyl-prolyl cis-trans isomerase [Roseobacter sp.
           MED193]
 gi|85825334|gb|EAQ45533.1| hypothetical peptidyl-prolyl cis-trans isomerase [Roseobacter sp.
           MED193]
          Length = 266

 Score = 66.2 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 52/182 (28%), Gaps = 8/182 (4%)

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
            +++   +++    +     E E+ A   +  +      L          +        +
Sbjct: 77  EEALIRGLLEARVEVDA-PTEEEVRAEWARDPSRFRSPPLWEVSHILCACDPRDKAAKEK 135

Query: 200 KRIKDA---EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQN 255
              K     +  +          +  +      S G    L   D  P+F+       + 
Sbjct: 136 ALKKANVLNDRLKTNPKDFVALAKTESDCGSKSSGGALGQLGPGDTVPEFERYLHHLKEG 195

Query: 256 NTTN-PYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             T  P +++ G   + +    +       A K  +S         +    +V++L + A
Sbjct: 196 EITPVPVLSRHGYHIVRMDAVAEGQELPFEAAKRAISMAMEKASWARSAQAFVQELAAGA 255

Query: 313 II 314
            I
Sbjct: 256 EI 257


>gi|313617659|gb|EFR89948.1| foldase protein PrsA [Listeria innocua FSL S4-378]
          Length = 291

 Score = 66.2 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/304 (9%), Positives = 82/304 (26%), Gaps = 40/304 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +L    ++ + S  +      +  T +   +T  ++   +          +    
Sbjct: 1   MKKKLILXXVMMMALFSLAACGGGGNVVKT-DSGDVTQDELYDAMK--------DKYGSE 51

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            VQ+L  E +   + + S    D            +        +              +
Sbjct: 52  FVQQLTFEKILGDKYKVSDEDVD------------KKFKEYKSQYGDQFSAVLAQSGLTE 99

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    Q  +  +V+          +  +    +                +          
Sbjct: 100 KSFKSQLKYNLLVQKATEANADTSDKALKEYYKT---------------WQPDITVSHIL 144

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLK--K 252
              + + K+ E+      K  +  +++++      + G+        + P F+      K
Sbjct: 145 VADENKAKEVEQKLKDGAKFADLAKEYSTDTATKENGGQLAPFGSGKMDPAFEKAAYALK 204

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA-QNTPTKIEKHEAEYVKKLRSN 311
           ++ + + P  TQ G   I +            K  +           ++  + +KK   +
Sbjct: 205 NKGDISAPVKTQYGYHIIQMDKPATKTTFDKDKKAVKESYLASQLTTENMQKTLKKEYKD 264

Query: 312 AIIH 315
           A + 
Sbjct: 265 ANVK 268


>gi|182417449|ref|ZP_02948776.1| peptidil-prolyl cis-trans isomerase [Clostridium butyricum 5521]
 gi|237665664|ref|ZP_04525652.1| peptidil-prolyl isomerase family protein [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182378618|gb|EDT76145.1| peptidil-prolyl cis-trans isomerase [Clostridium butyricum 5521]
 gi|237658611|gb|EEP56163.1| peptidil-prolyl isomerase family protein [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 252

 Score = 66.2 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/263 (10%), Positives = 66/263 (25%), Gaps = 46/263 (17%)

Query: 40  SRIRTTINGEVITDGDISKRIALL----KLQKINGELEKIAVQELIVETLKKQEIEKSGI 95
           + +   ING+ IT+ D+   I+      +         +  + +L+   L     +   +
Sbjct: 3   NNVLAIINGKEITEFDVENIISQYSEADQKSVNTDNGREKILDQLVSCELMYNFAQDEKL 62

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
                                                   +      +    + +    K
Sbjct: 63  EETDEFKVRI------------------------------EEARKDILTQMGI-SKAAGK 91

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
               E E        K   +   ++      +           ++      E        
Sbjct: 92  ESINENEALDYYNSNKEKFIIGEMVSVKHILV--------ESQEEAYNVKNEIENNQISF 143

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT-TNPYVTQKGVEYIAICD 274
            +   K++    +++ G         L   F+     ++ N  T+P  T+ G   I + D
Sbjct: 144 SDAALKYSMCPSNMNGGSLGTFGRGKLTASFEEAAFNAKINILTDPVETEFGFHIILVED 203

Query: 275 KRD--LGGEIALKAYLSAQNTPT 295
            RD  +     +K  +       
Sbjct: 204 FRDEYIKDFDDVKEEIMLHLKKK 226


>gi|154684591|ref|YP_001419752.1| YacD [Bacillus amyloliquefaciens FZB42]
 gi|154350442|gb|ABS72521.1| YacD [Bacillus amyloliquefaciens FZB42]
          Length = 296

 Score = 66.2 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/318 (11%), Positives = 96/318 (30%), Gaps = 35/318 (11%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
             S +    ++    V  +     +   ++   S     TI  + IT  D  K++     
Sbjct: 1   MKSRTLLTIIVAALLVCSVTVAYKLTKSQAAGSSEESIATIGDKHITRQDWMKKM----- 55

Query: 66  QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
                +  K  ++++I   + ++  EK+ +T  ++ ++  F+          ED      
Sbjct: 56  ---EDQYGKSTLEDMINAQVVEELAEKNKLTVSNSELDREFLLIKAVDNSFYEDSHITEK 112

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
                          Q  +  +++          + E+ +   K K +   +   R    
Sbjct: 113 -----------EWRDQIRYNILLEELLTKDIDISDKEMQSFYNKNKELYHFDDSYRIRHI 161

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH-- 243
            + +    ++           + +     +    E+   +      G   ++ E+  +  
Sbjct: 162 VVKNKDEADRVLA--------DLKGGSSFEAVAAERSTDRYTSQYGGDLGFVTENQENIP 213

Query: 244 -PQFQNLLKKSQNNTT-NPYVTQKGVEYIAICDKRDLGGEI--ALKAYLSAQNTPTKIEK 299
                   K  ++  +  P     G   I + +K          +K+ +  Q    ++  
Sbjct: 214 QAYITEAKKLKEDEWSVEPIKVSSGYAVIQLKEKLKSRTFSYNEVKSQIRRQIAMEQLGD 273

Query: 300 HEAEYVKKLRSNAIIHYY 317
                VK L   A + ++
Sbjct: 274 KAT--VKTLWKEAGVSWF 289


>gi|307297459|ref|ZP_07577265.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306916719|gb|EFN47101.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 546

 Score = 66.2 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/316 (6%), Positives = 76/316 (24%), Gaps = 32/316 (10%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +K      +   F +  I +  +  ++       N   IT  +I +  +       +   
Sbjct: 1   MKKFLLILLAAFFSLTLIGAEYAVRITKGGEAVSNEFWITREEIEQAFSATVANAASQGI 60

Query: 72  ----------------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
                           L+ + +  ++ E L      +S +      ++            
Sbjct: 61  ILDPYFDSYFTPSELGLKTMIIPYIVDEKLIDYFAWESNLIPSEEEIDAETDSMMEMYTS 120

Query: 116 SAEDFSSFLDKQ--GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
           S +                   +     ++  ++V+        +         +     
Sbjct: 121 SPDMVEQIEAIYGSMDAFRSEIRNYVSDALKAELVQESVAPLNDDALAAYFEEFKTEIKN 180

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIG 232
                  R +L +                +  +              +F+       + G
Sbjct: 181 QFETIRARHILVT----------EEATATELMDRINSGEITFAEAALQFSIDSSTAANGG 230

Query: 233 KAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL-SA 290
           +   ++     P+F+  +  +       P  ++ G   I + ++ ++     +       
Sbjct: 231 ELGSIVRGQTVPEFEEAILAAPIGELYGPVQSEFGYHLIIVEERNEINSLEDVVNSASYN 290

Query: 291 QNTPTKIEKHEAEYVK 306
                        +++
Sbjct: 291 DFVSGYQNDTYNRWIE 306


>gi|23394408|gb|AAN31492.1| peptidylprolyl isomerase [Phytophthora infestans]
          Length = 265

 Score = 66.2 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 12/129 (9%), Positives = 32/129 (24%)

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
             + ++  ++     +        +  +           E+     K     ++ +    
Sbjct: 15  CCIASVAGQDAAPVAIQAHASHLLVDTEAEADDLSVQLGEASNLFLKFAQLAKEHSKCPS 74

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY 287
               G         + P+F  +  + +    +   TQ G   + I  + D   E      
Sbjct: 75  SRKGGDLGTFDRGQMVPEFDKVAFEGEIGVVHKVKTQFGWHLVLISRRLDGTEEPDKYRD 134

Query: 288 LSAQNTPTK 296
           L        
Sbjct: 135 LKQALLKIM 143



 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/88 (12%), Positives = 30/88 (34%)

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
               ++++    K  K+ + +  +  K      K ++       G        ++ PQF 
Sbjct: 171 FHILVKSEDEADKLFKEIDAAEDKKTKLSELAGKHSTCPSGKKGGDLGMFGRGEMVPQFD 230

Query: 248 NLLKKSQNNTTNPYVTQKGVEYIAICDK 275
            ++ + +        TQ G   +   ++
Sbjct: 231 KVVFEGEVGELAKVQTQFGWHVLLCTER 258


>gi|145220375|ref|YP_001131084.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206539|gb|ABP37582.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
           phaeovibrioides DSM 265]
          Length = 704

 Score = 66.2 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 14/135 (10%), Positives = 37/135 (27%), Gaps = 11/135 (8%)

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLES 240
            +L     N   +    +                     ++++        G   +    
Sbjct: 353 HILIRFNPNSRADIQKGRALSDMILRELKAGGNFAELARRYSADPGSAARGGDLGWFRSD 412

Query: 241 DLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
            + P+F + +          P  TQ G+  I +        +  + + +     P     
Sbjct: 413 RMVPEFADAVFASKPGAIVGPVQTQFGLHIIKVAG---FDRKAVVASEIVRTIRP----- 464

Query: 300 HEAEYVKKLRSNAII 314
             +E  + +R  A++
Sbjct: 465 -SSETAEGIRRRAMV 478



 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 4/101 (3%)

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK- 275
           +    F++     S G           P  + +        + P   Q G     +  + 
Sbjct: 602 SSFSMFSASDIRWSDGFIPGYGVDR--PLVEAMAGMPLARLSEPVQIQSGYAVCEVSSRA 659

Query: 276 -RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             +       KA ++ Q    K E+  + Y   LR  A I 
Sbjct: 660 LPEGLDIKTEKAGIAPQVLGLKQEQLFSAYFSALRKQAKIE 700



 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/136 (10%), Positives = 44/136 (32%), Gaps = 3/136 (2%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
           +  +   ++ +I  +    +G  ++ +    +++ +   +    +K   +          
Sbjct: 451 KAVVASEIVRTIRPSSETAEGIRRRAMVFQMDAKEKGMDESASADKLPLETTGQFGRHMP 510

Query: 236 YLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL---GGEIALKAYLSAQN 292
                          + S+ + ++   T KG   + +  K D      +  LKA ++ + 
Sbjct: 511 IAAIGYNDKIDDFAFRSSEGDLSDVIETPKGFYVMRLTGKNDSGYRKLDDDLKAGITTEI 570

Query: 293 TPTKIEKHEAEYVKKL 308
              K  +     +  L
Sbjct: 571 IKEKKGEFIKNRLASL 586


>gi|256545093|ref|ZP_05472459.1| PPIC-type PPIASE domain protein [Anaerococcus vaginalis ATCC 51170]
 gi|256399134|gb|EEU12745.1| PPIC-type PPIASE domain protein [Anaerococcus vaginalis ATCC 51170]
          Length = 248

 Score = 66.2 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/279 (11%), Positives = 79/279 (28%), Gaps = 49/279 (17%)

Query: 36  WAMSSRIRTTINGEVITDGDISKRIALLK--LQKINGELEKIAVQELIVETLKKQEIEKS 93
              ++ I   +NG+ I+  ++   I  ++   Q +N +       EL+ + L   +  ++
Sbjct: 2   TEKNNDILAEVNGKKISQKEVVSFITQMQGGQQFLNPQGIHQITDELVNQELMYIDALEN 61

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
            +  D                                       +  +++  +   +   
Sbjct: 62  KLDEDEEFTKEL-------------------------------EITKENMLKNYAMHKLF 90

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                 + EI       K +  +    R     + D +       +              
Sbjct: 91  ESIEVSDEEIKNYYDNNKEVVKKPKSYRASHILVDDEESAKNILNE---------INDGL 141

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAI 272
              +   K++   +    G      +  +  +F+  L K  +   + P  TQ G   I +
Sbjct: 142 SFEDAANKYSKD-NGSKNGDLGEFPKGTMVKEFEEALDKLGEGEISKPVKTQFGYHIIKL 200

Query: 273 CDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
               D        +K  +       K ++   +Y++K R
Sbjct: 201 DHTHDEYLPEFDEIKDRIHDTLLMIKRQE---KYLEKTR 236


>gi|290894110|ref|ZP_06557083.1| rotamase [Listeria monocytogenes FSL J2-071]
 gi|290556365|gb|EFD89906.1| rotamase [Listeria monocytogenes FSL J2-071]
          Length = 295

 Score = 66.2 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/312 (8%), Positives = 88/312 (28%), Gaps = 47/312 (15%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +++  K++ +     +  +    S              +   +T  ++ + +        
Sbjct: 1   MTNLKKVMISVIAATLLLLAGCGSSA--------VVKTDAGSVTQDELYEAMKT------ 46

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
                   VQ+L  + + + +   +    ++                  E +    +   
Sbjct: 47  --TYGNEVVQQLTFKKILEDKYTVTEKEVNAEY------------KKYEEQYGDSFESTL 92

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
             +N  K        +  +V+          E ++    +        +  +R +L    
Sbjct: 93  SSNNLTKTSFKENLEYNLLVQKATEANMNVSESKLKTYYKTW----EPDITVRHIL---- 144

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQ 247
                     +   K+ +       K  +  +++++      + G        ++   F+
Sbjct: 145 -------VDDEATAKEIQTKLKNGEKFTDLAKEYSTDTATSTNGGLLDPFGPGEMDETFE 197

Query: 248 NLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS-AQNTPTKIEKHEAEY 304
                 +++++ +    +  G   I +  K + G     KA +  A        ++    
Sbjct: 198 KAAYALENKDDVSGIVKSTYGYHLIQLVKKTEKGTYAKEKANVKAAYIESQLTTENMTAA 257

Query: 305 VKKLRSNAIIHY 316
           +KK    A I  
Sbjct: 258 LKKELKAANIDI 269


>gi|270295713|ref|ZP_06201913.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273117|gb|EFA18979.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 520

 Score = 66.2 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/303 (9%), Positives = 88/303 (29%), Gaps = 44/303 (14%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           + L+   F +  F    +      A    +   ING+ +   +  +           G  
Sbjct: 1   MALMVRLFWVFFFLGFGL---AVSAQDDPVLMRINGKEVFRSEFERSYNKGGTSVGAG-- 55

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            + A+   + + +                                +        +  G +
Sbjct: 56  -RKALDAYVNKFI--------------------------------DFRLKIEAAEVAGLD 82

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK--QKMKNITVREYLIRTVLFSIPDN 190
             + +   Q  +   +   ++      E E        K      R Y+     +   + 
Sbjct: 83  TSRVFQKEQDEYRRCLIKSYLTDEETAEQEARQYYDKMKSGRRAGRVYVKHIFKYLPQNI 142

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL 250
                  ++ R+     +  +        +    +  D       ++    +  +F++++
Sbjct: 143 SGHTLREMESRMDSIYRALAKEGGAVPSFDACVEQFSDEKKAF--WVGWLQMPVEFEDIV 200

Query: 251 KK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY-LSAQNTPTKIEKHEAEYVKKL 308
              +    + P++T +G+  + + +++++     +K   +  Q     ++K    +V KL
Sbjct: 201 FGLNAGEISRPFLTPQGIHIVKVLEQQEILPFERMKDKIIRCQTRRHGMDKGTRAFVDKL 260

Query: 309 RSN 311
           +  
Sbjct: 261 KKE 263


>gi|229084142|ref|ZP_04216431.1| Foldase protein prsA 1 [Bacillus cereus Rock3-44]
 gi|228699178|gb|EEL51874.1| Foldase protein prsA 1 [Bacillus cereus Rock3-44]
          Length = 285

 Score = 66.2 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 42/122 (34%), Gaps = 5/122 (4%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNL-LKKSQNN 256
           +   K  +E   +        ++++         G   Y     +  +F++   K  ++ 
Sbjct: 141 EATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGYFGPGKMVKEFEDAAYKMKKDE 200

Query: 257 TTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRSNAI 313
            + P  +Q G   I + D ++        KA +       K++  +  A+  ++    A 
Sbjct: 201 VSEPVKSQFGYHIIKVTDIKEPEKSFDDSKADIKKDLVAKKMQDGEFMAKLQEEELKKAD 260

Query: 314 IH 315
           + 
Sbjct: 261 VK 262


>gi|217964409|ref|YP_002350087.1| foldase protein PrsA [Listeria monocytogenes HCC23]
 gi|217333679|gb|ACK39473.1| foldase protein PrsA [Listeria monocytogenes HCC23]
 gi|307571026|emb|CAR84205.1| protein export protein (post-translocation molecular chaperone)
           [Listeria monocytogenes L99]
          Length = 295

 Score = 66.2 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/312 (8%), Positives = 88/312 (28%), Gaps = 47/312 (15%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +++  K++ +     +  +    S              +   +T  ++ + +        
Sbjct: 1   MTNLKKVMISVIAATLLLLAGCGSSA--------VVKTDAGSVTQDELYEAMKT------ 46

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
                   VQ+L  + + + +   +    ++                  E +    +   
Sbjct: 47  --TYGNEVVQQLTFKKILEDKYTVTEKEVNAEY------------KKYEEQYGDSFESTL 92

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
             +N  K        +  +V+          E ++    +        +  +R +L    
Sbjct: 93  SSNNLTKTSFKENLEYNLLVQKATEANMNLSESKLKTYYKTW----EPDITVRHIL---- 144

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQ 247
                     +   K+ +       K  +  +++++      + G        ++   F+
Sbjct: 145 -------VDDEATAKEIQTKLKNGEKFTDLAKEYSTDTATSTNGGLLDPFGPGEMDETFE 197

Query: 248 NLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS-AQNTPTKIEKHEAEY 304
                 +++++ +    +  G   I +  K + G     KA +  A        ++    
Sbjct: 198 KAAYALENKDDVSGIVKSTYGYHLIQLVKKTEKGTYAKEKANVKAAYIESQLTTENMTAA 257

Query: 305 VKKLRSNAIIHY 316
           +KK    A I  
Sbjct: 258 LKKELKAANIDI 269


>gi|167626495|ref|YP_001676995.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|167596496|gb|ABZ86494.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 470

 Score = 66.2 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 108/291 (37%), Gaps = 21/291 (7%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGEL-------EKIAVQELIVETLKKQEIEK 92
           ++    +N + IT  ++ + +A  +    N           + A+Q+LI +++  Q  E+
Sbjct: 53  NKTVAIVNSKPITSFELDQEVAKFEAMNPNSNFHSDSLQVRREALQDLIAQSVLLQLAER 112

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
           + I   +  ++      A   G+S E     ++  G+    +K+ +  Q +   + +   
Sbjct: 113 NNIIISNQQLDAAIKDIAAKNGVSVESLKLNVEASGMSFESYKKRIREQLMVSQLQQQAI 172

Query: 153 MLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
             +      EI    +K +         ++ Y ++ ++ ++PD+K   Q  +    K A 
Sbjct: 173 SQQVYVSPEEIQKYIKKHQEQFDREMAPIKLYTLKNLIVALPDSKKARQKKIDLFKKLAI 232

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQ-YLLESDLHPQFQNLLKK-SQNNTTNPYVTQ 264
                       +++F+   +    G     +    +   +++ +K   ++  + P++  
Sbjct: 233 AVNKGYIDFSEVVKQFSQAPNATYGGIVSQQVKFDSIPSMYRDYVKDLKEHQVSEPFIVN 292

Query: 265 KGVEYIAICDKRDLGGEIALKAY------LSAQNTPTKIEKHEAEYVKKLR 309
             ++ I I +  +    ++ K        +  +      E+     + + R
Sbjct: 293 HTLQMIYIDNIDEKAPMLSKKVTKYYVYAIEIKLDGGMSEEGAKSSLDRAR 343



 Score = 43.9 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 27/271 (9%), Positives = 74/271 (27%), Gaps = 9/271 (3%)

Query: 53  DGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
                + +A +KL      L             K    +K  I  +   +++  V    +
Sbjct: 191 QEQFDREMAPIKL-YTLKNLIVALPDSKKARQKKIDLFKKLAIAVNKGYIDFSEVVKQFS 249

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
              +A        +             ++ +    V   F++ +    + I    +K   
Sbjct: 250 QAPNATYGGIVSQQVKFDSIPSMYRDYVKDLKEHQVSEPFIVNHTLQMIYIDNIDEKAPM 309

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
           ++ +          I  +   ++   +  +  A  +            K+       + G
Sbjct: 310 LSKKVTKYYVYAIEIKLDGGMSEEGAKSSLDRARLAIESGQDFTKVALKYNQDYDHAN-G 368

Query: 233 KAQYLLE-----SDLHPQFQNLLKKSQNNTTNPYVT-QKGVEYIAICDKRDLGGEIALKA 286
           K +++       +     F  L    +   + P+    K    +     ++      LK 
Sbjct: 369 KFRWVSRLDSPPAIPPAAFAKLETMKEGEVSEPFQADPKTWMIMKYTKVKEHDAAEELKE 428

Query: 287 Y-LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                     K ++    ++  ++ +A I  
Sbjct: 429 QKALEAIFSEKAQEVYKTWLTSMKDDAYIEI 459


>gi|241758711|ref|ZP_04756824.1| peptidyl-prolyl cis-trans isomerase [Neisseria flavescens SK114]
 gi|241320919|gb|EER57132.1| peptidyl-prolyl cis-trans isomerase [Neisseria flavescens SK114]
          Length = 617

 Score = 66.2 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 63/260 (24%), Gaps = 11/260 (4%)

Query: 57  SKRIALLKLQKINGELEKIAVQ-ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
            + +  ++ Q     L  +     L+ +   +Q I  +  T    +  +     A    +
Sbjct: 132 DQFVEDIREQFQLQNLLNLVQNGALVSDAQARQLINLTQATRTIRSFTFSPEAFAAQVKV 191

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
                  + +         +               D   K      E+            
Sbjct: 192 DDAALQKYYEAHKKDYLIPQAVKLEYVALNI---KDLADKQTVSAEEVQKAYDSKSVDLS 248

Query: 176 REYLIRTVLFSIPDNKLQ--NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS-IG 232
               I  +   +  N  +  N     +  K A E +           K++  +   +  G
Sbjct: 249 PRAEIAHIFIPVMPNGDEASNAEIKAEVDKMAAELKAHPDAFAELAAKYSKDLSSSNKGG 308

Query: 233 KAQYLLE----SDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
              YL +           +      +   ++   +  G   I + +          KA +
Sbjct: 309 NLGYLSKSGGSGFGPEFDKAAFALGKGEVSDTIKSSLGYHVIKVLNVEAEPTLEQAKARI 368

Query: 289 SAQNTPTKIEKHEAEYVKKL 308
            A     K         +KL
Sbjct: 369 EAALKLKKAASAFNAAKEKL 388


>gi|332703851|ref|ZP_08423939.1| hypothetical protein Desaf_2729 [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554000|gb|EGJ51044.1| hypothetical protein Desaf_2729 [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 374

 Score = 66.2 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/307 (9%), Positives = 93/307 (30%), Gaps = 28/307 (9%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN------GELE 73
            ++ +   + + +  S      +   +NG  I    +  +  ++ L   +       +L 
Sbjct: 7   LLMALLASIIVTACSSDRSEPGVIAMVNGRPIHLNQLEYKYDIMYLDSTDDLNPTVNQLR 66

Query: 74  KI---AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
                 + +LI++ L  QE+   G+      +N       ++       F   L ++ I 
Sbjct: 67  TDYGTILSDLIIQELIIQELADRGLEVTDEELNKAEDSVRKD--YPEGAFEEILVEEYID 124

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
            + +++    +      ++            E  +  +   +       ++ ++ + P  
Sbjct: 125 ISFWRKEFKARISIEKFLQQVLRPSIKIDYTEADSYYRSHLSDFYLPSRLKFLIITGP-- 182

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL- 249
                       ++      +L          A+K+ +V + +   + E  L   + N  
Sbjct: 183 -----------SRELVLKATQLFSKGEAAADIAAKLKEVEVRQL-RMREDRLPASWLNAL 230

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY--LSAQNTPTKIEKHEAEYVKK 307
                   ++    +     + + ++         +AY  +       K+      ++ +
Sbjct: 231 ANLEPGEASSVLTEESKFHRLILVERSPAKVLDPTQAYPLVEQVLLDQKMRDAFNAWLAR 290

Query: 308 LRSNAII 314
               A I
Sbjct: 291 KLEVATI 297


>gi|327398937|ref|YP_004339806.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hippea maritima DSM
           10411]
 gi|327181566|gb|AEA33747.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hippea maritima DSM
           10411]
          Length = 631

 Score = 66.2 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 74/230 (32%), Gaps = 4/230 (1%)

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +++     + +   K   +K+    + + V++          +  E  + F  K    D 
Sbjct: 169 KRLFKDVKVSDKDVKSFFDKNYSKINLDFVSFDISSFKSKVKVDDEKLNKFYQK-HKSDY 227

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                +  + I   +      +K  + E E   N  K          +  +L S  DN+ 
Sbjct: 228 RIPTMVKFEYIVVPLSYVKKKIKVTDNETEAFYNAHKDYFKVPLRIKVAHILISSKDNQT 287

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD-LHPQFQNLLK 251
            ++   +           ++       +  +        G+  Y+ +   +   + N++K
Sbjct: 288 DSKLRKKADDVYKLLEDKKISFKEAAKKYSSDDYTRNVGGELGYVTKDMVIDEFWNNIIK 347

Query: 252 KSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEK 299
             +   + P+ T+ G     + D +   +    ++K  +       K +K
Sbjct: 348 LKRGEISKPFKTKFGYHIALVEDIKKPFVRPFKSVKDQIKDYLKTNKAKK 397



 Score = 37.7 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/249 (9%), Positives = 59/249 (23%), Gaps = 3/249 (1%)

Query: 70  GELEKIAVQEL-IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             ++      L   +  K   +E   I            + A+  GL  ++      K  
Sbjct: 380 KSVKDQIKDYLKTNKAKKVWFVEADKIFVKIRDSKESMKKAAKEFGLPFKETDYMSLKNP 439

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                 K            +    +   G +  ++   K        +        +   
Sbjct: 440 QTPFTAKMVQNALLSNKGALLGPDLSSAGYVIYKLTDKKPSYIPPFDKVKDKIKKDYIEK 499

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
                        +    ++   L       +     + ++S           L     +
Sbjct: 500 QAIKLALAQADNIL-KQIKASKSLKDVALAFKLKVETVKNLSKLMPTDKFPCSLKEDIMS 558

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKR-DLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
            + +      +     K +    + DK  D      LK  +  +    K  +   +++ K
Sbjct: 559 RIFQKGKGYADKCQQGKKIYVFEVTDKIFDEKEFNKLKESIRNELISEKENEILEKFIDK 618

Query: 308 LRSNAIIHY 316
           L+    I  
Sbjct: 619 LKKQTKIKI 627


>gi|92113460|ref|YP_573388.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chromohalobacter
           salexigens DSM 3043]
 gi|91796550|gb|ABE58689.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chromohalobacter
           salexigens DSM 3043]
          Length = 270

 Score = 66.2 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 12/175 (6%), Positives = 49/175 (28%), Gaps = 4/175 (2%)

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           + +   + +    +          +        +R +L +   +  + +    +  +   
Sbjct: 84  LERELEVPEPSEADCRRFHAAHAERFSEPTRLRVRHILLAAAPDDAEARDTGYRLGETLI 143

Query: 207 ESRLR-LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQ 264
                   +     ++ ++       G+  +L      P+  + L   +      P  ++
Sbjct: 144 TQLSECPERFTEFAQRHSACPSKDKGGELGWLAPGQTVPELDRALQHLATGLHARPLASR 203

Query: 265 KGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            G   +++  + +       A+   +          +    Y+  L  +  I  +
Sbjct: 204 YGWHLVSLDAREEGRALPYDAVAERVRHSLREQATRRALRHYLLALEDDIGIQGF 258


>gi|134291084|ref|YP_001114853.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           vietnamiensis G4]
 gi|134134273|gb|ABO58598.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           vietnamiensis G4]
          Length = 262

 Score = 65.9 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/181 (10%), Positives = 46/181 (25%), Gaps = 5/181 (2%)

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
             +    +++ +          +      +      R  ++          +      ++
Sbjct: 69  DDAAVDALLERELTHVPQPDRADCERYYSRHAARFRRGDIVYASHVLFAVTERVPLAPLR 128

Query: 200 KRIKDAEESRLRLPKDCNK-LEKFASKIHDVSIGKAQYLLESDLHPQFQN--LLKKSQNN 256
           +R + A    L  P          ++       G    LL  D  P+F+       +   
Sbjct: 129 ERAQAALADVLAAPDTFEAVARASSNCPSAQVGGNLGQLLRGDTVPEFEAALFDGDALGV 188

Query: 257 TTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                 T+ G   + I  +              ++        ++   +YV  L   A I
Sbjct: 189 LPKLVNTRFGFHIVRIERRVPGAAVPFDEAAGQIAEYLAQCVRQRAMRQYVAVLAGAARI 248

Query: 315 H 315
            
Sbjct: 249 E 249


>gi|228924392|ref|ZP_04087629.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835272|gb|EEM80676.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 290

 Score = 65.9 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/199 (9%), Positives = 51/199 (25%), Gaps = 7/199 (3%)

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           D +   +    +     +    + + +   +    +        +               
Sbjct: 78  DDETKKNVDELKKEMGDNFKSYLTQKNVKNEDELKDKLKTQMAFEKAIKASITEKEIKNY 137

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL- 242
           +             +K  K+ +E            ++ +         G+   L    + 
Sbjct: 138 YKPILKVSHILVKDEKTAKEIKEKINNSEDFTTVAKEHSEDPGSKEKGGELGELNAFQMD 197

Query: 243 ---HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT--KI 297
                  +          + P  +  G   I + +K++L      K  +S +      K 
Sbjct: 198 RMDPKFKEATYNLETGQVSEPIKSSFGYHIIKMIEKKELKPFNQEKENISKELEAKRLKD 257

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           ++ + ++ K L   A I  
Sbjct: 258 QQWQQKFFKDLFKQADIKI 276


>gi|145632388|ref|ZP_01788123.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae 3655]
 gi|144987295|gb|EDJ93825.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae 3655]
          Length = 622

 Score = 65.9 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/395 (11%), Positives = 106/395 (26%), Gaps = 84/395 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           +  K+    +          + + F +  +  Y  ++ +      +NGEVI+  D   R 
Sbjct: 2   LIEKMHNLSNSKAAKFILGLITLSFLVGGMSGYL-FSSNDTYAAKVNGEVISQQDFLNRY 60

Query: 61  ALLKLQKINGE----------------LEKIAVQELIVETLKKQEIE------------- 91
                 +   E                L +  V  +I + L +Q ++             
Sbjct: 61  NQEFEARAQREGEAFMAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIKR 120

Query: 92  ----KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
                          N  + +  +   L+++ ++S L      +         + I P  
Sbjct: 121 AIVTDPNFQVKGKFDNSVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVPAQ 180

Query: 148 VK-------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
           VK                    D M K    + EI    +  +   V+   ++     + 
Sbjct: 181 VKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYIDLS 240

Query: 189 DNKLQNQGFV----------------------------QKRIKDAEESRLRLPKDCNKLE 220
            + +     V                            ++  K   E   +     +  +
Sbjct: 241 ADNISKNLQVTDIEIAQYYQDNKAQFMTQRLAHIQFANEQDAKVVYEELQKGANFADVAK 300

Query: 221 KFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDL 278
             +  KI   + G   ++  ++L   F++          + P         + + +++  
Sbjct: 301 TKSLDKISGENGGDLGWVNANELPKAFEDAAAALQVGQYSQPINVDGNYHIVLVQERK-A 359

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                +KA +      + IE       K+    A 
Sbjct: 360 QSLENVKAQIVDLVRKSLIESRYFSLEKQASDKAF 394


>gi|103486661|ref|YP_616222.1| hypothetical protein Sala_1173 [Sphingopyxis alaskensis RB2256]
 gi|98976738|gb|ABF52889.1| hypothetical protein Sala_1173 [Sphingopyxis alaskensis RB2256]
          Length = 673

 Score = 65.9 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/405 (10%), Positives = 95/405 (23%), Gaps = 90/405 (22%)

Query: 1   MTSKVFTSLSDFI-KLLTTYFVLIIFCIVPIVSYKSWAMSSRI----RTTINGEVITDGD 55
           M + +    S  I K L   FV+++     +      +    I       + GE I  G+
Sbjct: 26  MITAIRAMFSSTIGKFLALAFVVLVGVAFALSDVTGNSTFGGIGGANVAKVGGEEIGVGE 85

Query: 56  ISKRIALLKLQKINGELE------------KIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           +  R+     Q    +                 + +LI      Q   + G       ++
Sbjct: 86  LRDRVRQAYDQARRNQPGLTMAAFVENGGLDQVLGQLIDGLAFDQYATELGFGVSKRLID 145

Query: 104 YFFVQHARNTGLSAED----FSSFLDKQGIGDNHFKQYLAIQSIWPD------------- 146
                     G+S +     F +FL + GI +   ++ L  Q +                
Sbjct: 146 GRIADLPAFAGVSGKFDQTVFENFLRQNGISEAQLRRDLRQQILLEQLAAPIAQMPRIAP 205

Query: 147 ---------VVKNDFML-----------------------------KYGNLEMEIPANKQ 168
                    +++                                  K+   E  +     
Sbjct: 206 ALAEPYAALLLEQRRGQATFIPASAFAPKGDPGDAALRRFLTQNAAKFTVPERRVIQYAM 265

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE-------- 220
             +       +    +  +  +        + R         +   +    +        
Sbjct: 266 FDRASVPVPAVTDAEIARVYKDNAAQYAATETRRFAQVILPDQAAANRLAAKVRSGASLA 325

Query: 221 --KFASKIHDVSIGKAQ--YLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK- 275
                + +   + G         +      +      +     P  T  G   + + D  
Sbjct: 326 SAAAEAGLSASTTGDLGQSAYAATTSAAVARAAFAAKRGEVVGPLQTGLGWTVVRVEDVT 385

Query: 276 -RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN----AIIH 315
            R         A + A+    K  +   +Y   ++      A I 
Sbjct: 386 TRPARSLADASAEIRAELASNKANEAIVDYYNAIQDAVNSGASIE 430


>gi|146308191|ref|YP_001188656.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina ymp]
 gi|145576392|gb|ABP85924.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina ymp]
          Length = 93

 Score = 65.9 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 8/82 (9%), Positives = 25/82 (30%), Gaps = 1/82 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-N 255
             + +  + + +           +  +S     + G         +  +F  ++  +   
Sbjct: 12  ASEDKCNELKAAIEGGADFAQLAKDNSSCPSGRNGGDLGSFGPGQMVKEFDTVVFSAPVG 71

Query: 256 NTTNPYVTQKGVEYIAICDKRD 277
               P  TQ G   + +  ++D
Sbjct: 72  VVQGPVKTQFGYHLLEVTSRQD 93


>gi|309792550|ref|ZP_07687012.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oscillochloris
           trichoides DG6]
 gi|308225364|gb|EFO79130.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oscillochloris
           trichoides DG6]
          Length = 523

 Score = 65.9 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 15/184 (8%), Positives = 36/184 (19%), Gaps = 18/184 (9%)

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
               ++      K        P +             +     +  +         + R 
Sbjct: 257 YHEQLLNTRVQEKLVPEAEFTPGDVPTKVTARQILVAVTPPAEATQEQIDALFVTAKARA 316

Query: 203 KDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLES--------DLHPQFQNLLKKS 253
                             + +         G      +                  L   
Sbjct: 317 DALLADLRNGADFATLAAEESDDPGSASMGGDLGSFDKDGKADNGATYPPELVAAALALP 376

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            N  + P  TQ G   + + D R +  E         +           +++ + RS   
Sbjct: 377 ANTLSEPVRTQFGWHILEVTD-RTVPTEEDQLREARTK--------ALDDWLTQQRSAIA 427

Query: 314 IHYY 317
           +  +
Sbjct: 428 VQRF 431


>gi|299138720|ref|ZP_07031898.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp.
           MP5ACTX8]
 gi|298599356|gb|EFI55516.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp.
           MP5ACTX8]
          Length = 656

 Score = 65.9 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/270 (10%), Positives = 70/270 (25%), Gaps = 9/270 (3%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I+  +    +      +    L    V   + +   + +  + G     +          
Sbjct: 157 ISVPEFEAEVKSDLELQRLQSLVTAGVT--VSDAAVRADYMQQGTKVKFDYAVIAASDIK 214

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK--Q 168
           +    S  D  +F  +                ++     N    K    + ++ A     
Sbjct: 215 KTINPSDADLQAFFKQFAARYATAIPETRKLELFSFDASNIPGGKPQVNDADVQAYYNAH 274

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE-ESRLRLPKDCNKLEKFASKI- 226
             +     +   R +L ++            K   +   +         +  +K +    
Sbjct: 275 LDQYKLPEQVKTRHILITVAKGADAKTDAAAKAKAEDILKQIRAGGNFADLAKKNSDDPG 334

Query: 227 HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEI--A 283
                G+   +  S   P++ +  +  +   T++   +Q G   I    K     +    
Sbjct: 335 SKDQGGELPLMPTSGFVPEYSKAAMALNPGQTSDLVRSQFGYHIIQTEQKEAAHTKTLAE 394

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            K  +       K    E  +  +L + A 
Sbjct: 395 TKDTIVPLLQQQKAGAAELNFANQLAAEAK 424



 Score = 38.9 bits (88), Expect = 0.97,   Method: Composition-based stats.
 Identities = 16/170 (9%), Positives = 40/170 (23%), Gaps = 9/170 (5%)

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           +V++ F       E +  A+ + +         +                 +    + A 
Sbjct: 369 LVRSQFGYHIIQTEQKEAAHTKTLAETKDTIVPLLQQQ-------KAGAAELNFANQLAA 421

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKG 266
           E++    +             D           +D           ++        T +G
Sbjct: 422 EAKKNGMQKTADAHSLHLVTTDYIGHDGVIASLADSSNVLTQAFGVAKGAAPATASTGEG 481

Query: 267 VEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                + D +          K ++       K  +     + KL   A +
Sbjct: 482 YAVFQVDDIKAAHAPDFADYKPHILDDYREQKAPELLNSQLIKLADRAKV 531



 Score = 35.8 bits (80), Expect = 8.1,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 33/133 (24%), Gaps = 4/133 (3%)

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
            +L    + K       Q          L   K          K  D+    AQ      
Sbjct: 504 HILDDYREQKAPELLNSQLIKLADRAKVLNDLKKAAAEMNVPVKTSDLVGRDAQVPDLGA 563

Query: 242 LHPQFQNLLKKSQNNTTNPY-VTQKGVEYIAICDKRDLGGEIALKA--YLSAQNTPTKIE 298
           L      +    +   + P      G   I + DK++   +   K       +    K E
Sbjct: 564 LTGPASVVFSLPKGGISGPINEGPNG-SVIQLADKQEPTADDIAKNLPTSREKLLNVKRE 622

Query: 299 KHEAEYVKKLRSN 311
           +    +V  L   
Sbjct: 623 EIFNVFVGSLMDK 635


>gi|298528165|ref|ZP_07015569.1| conserved hypothetical protein [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511817|gb|EFI35719.1| conserved hypothetical protein [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 312

 Score = 65.9 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 36/311 (11%), Positives = 98/311 (31%), Gaps = 27/311 (8%)

Query: 18  TYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK---LQKINGELEK 74
            +   ++F  V        +    +  T+NG+ I   ++            + +  +L++
Sbjct: 5   FFVTALVFLAVLAWGCSPDSPEEGVVATVNGQPIYLDEVESGYDADYFKWSRGVPPDLKE 64

Query: 75  I------AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
           I       + +L+V+ L +QE+  SG   D   V     +  ++       F   L ++ 
Sbjct: 65  IKSSYGRVLLDLVVQKLIEQELNSSGHAVDPGEVAKIEREIRQD--YPDGGFEEVLIEEH 122

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
           I    ++  +    +W    K     +      ++              Y+   ++F   
Sbjct: 123 IDLEFWRASILKDLMWDKFKKEVLRPRISLDVEDVKEYYHYHIEDF---YIPERIVFLHL 179

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
            +  +++           E   R+ +          K   V++G+ +  ++         
Sbjct: 180 SSGKEDKLQEVLDTFQESEDISRIRE----------KYPQVNVGEYEMRVDRLPLGLQDE 229

Query: 249 LLKKSQNNTTNPYVTQKG-VEYIAICDKRDLGGEIALK--AYLSAQNTPTKIEKHEAEYV 305
           L    +   +     ++G    + + D++D       +    +       K+ K    ++
Sbjct: 230 LTGLQKGEKSQIQKNRQGLYYRVMVMDRKDSKLLKPHQVYDIIEENLVQEKMHKVFYNWL 289

Query: 306 KKLRSNAIIHY 316
           +     + I  
Sbjct: 290 ETTVDESDIKI 300


>gi|319638362|ref|ZP_07993124.1| peptidyl-prolyl cis-trans isomerase [Neisseria mucosa C102]
 gi|317400111|gb|EFV80770.1| peptidyl-prolyl cis-trans isomerase [Neisseria mucosa C102]
          Length = 617

 Score = 65.9 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/260 (11%), Positives = 68/260 (26%), Gaps = 11/260 (4%)

Query: 57  SKRIALLKLQKINGELEKIAVQ-ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
            + +  ++ Q     L  +     L+ +   +Q I  +  T    +  +     A    +
Sbjct: 132 DQFVEDIREQFQLQNLLNLVQNGALVSDAQARQLINLTQATRTIRSFTFSPEAFAAQVKV 191

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
                  + +        +    A++  +  +   D   K      E+            
Sbjct: 192 DDAALQKYYEA---HKKDYLIPQAVKLEYVALSIKDLAEKQTVSAEEVQKAYDSKSVDLS 248

Query: 176 REYLIRTVLFSIPDNKLQ--NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS-IG 232
               I  +   +  N  +  N     +  K A E +           K++  +   +  G
Sbjct: 249 PRAEIAHIFIPVMPNGDEASNAEIKAEVDKMAAELKAHPDSFAELAAKYSKDLSSSNKGG 308

Query: 233 KAQYLLE----SDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
              YL +           +      +   ++   +  G   I + +          KA +
Sbjct: 309 NLGYLSKSGGSGFGPEFDKAAFALGKGEVSDTVKSSLGYHVIKVLNVEAEPTLEQAKARI 368

Query: 289 SAQNTPTKIEKHEAEYVKKL 308
            A     K         +KL
Sbjct: 369 EAALKLKKAASAFNAAKEKL 388


>gi|126666859|ref|ZP_01737835.1| peptidyl-prolyl cis-trans isomerase C2 [Marinobacter sp. ELB17]
 gi|126628575|gb|EAZ99196.1| peptidyl-prolyl cis-trans isomerase C2 [Marinobacter sp. ELB17]
          Length = 92

 Score = 65.9 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 10/80 (12%), Positives = 27/80 (33%), Gaps = 1/80 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-N 255
             + + ++ ++            +K +S     + G         + P+F  ++  +  N
Sbjct: 12  DTEAKCEELKKDIEGGQDFAEVAKKHSSCPSGGNGGDLGSFGPGQMVPEFDTVVFSADLN 71

Query: 256 NTTNPYVTQKGVEYIAICDK 275
               P  TQ G   + +  +
Sbjct: 72  TVQGPVKTQFGYHLLEVTSR 91


>gi|124516598|gb|EAY58106.1| putative peptidyl-prolyl cis-trans isomerase [Leptospirillum
           rubarum]
          Length = 324

 Score = 65.9 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/212 (10%), Positives = 58/212 (27%), Gaps = 4/212 (1%)

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
           +  N    +  ++  L  E     +  +      + +    Q            L     
Sbjct: 83  SERNAALRETVQDFFLEEEGKKRGIKIRPNEIKDYLKNHFPQPEKSLEPFARKALFLQKT 142

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD--AEESRLRLPKDCN 217
           E  +        +     Y     LF I    + +   V K+ +     ++ ++      
Sbjct: 143 EEALAPFPDISISTERSFYKNHQNLFRISRQAIVDHIVVAKQEEAESIRDALIKGSSFAR 202

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
             +  +  +   S G+ +      + P F  +        T    +  G     +     
Sbjct: 203 LAKLESLGMEASSGGRMKPYPRGTMPPPFDTVFTMKPGEITPVLSSPYGYHLFRLEKFIP 262

Query: 278 --LGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
                   +K ++  + T  K +K   E++ +
Sbjct: 263 EHTLSFSMVKNWIKKKLTRVKRQKVLQEWLAQ 294


>gi|116872876|ref|YP_849657.1| peptidyl-prolyl isomerase (post-translocation molecular chaperone)
           [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116741754|emb|CAK20878.1| peptidyl-prolyl isomerase (post-translocation molecular chaperone)
           [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 294

 Score = 65.9 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/312 (8%), Positives = 86/312 (27%), Gaps = 47/312 (15%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           ++   K++ +     +  +    S              +   +T  ++ + +        
Sbjct: 1   MTKLKKVMISVIAATLLLLAGCGSSA--------VVKTDAGSVTQDELYEAMKT------ 46

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
                   VQ+L  + + + +   +    ++                  E +    +   
Sbjct: 47  --TYGNEVVQQLTFKKILEDKYTVTEKELNAEY------------KKYEEQYGDSFESTL 92

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
             +N  K        +  +V+          + ++    +        +  +R +L    
Sbjct: 93  SSNNLTKTSFKENLEYNLLVQKATEANMKVSDSKLKTYYKTW----EPDITVRHIL---- 144

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQ 247
                     +   K+ +       K  +  +++++      + G        ++   F+
Sbjct: 145 -------VDDEATAKEIQTKLKNGEKFSDLAKEYSTDTATKTNGGLLDPFGPGEMDETFE 197

Query: 248 NLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA-QNTPTKIEKHEAEY 304
                 +++++ +    +  G   I +  K + G     KA +           ++    
Sbjct: 198 KAAYALENKDDISGIVKSTYGYHLIQLVKKTEKGSYEKEKANVKKAYIKSQLTSENMTAA 257

Query: 305 VKKLRSNAIIHY 316
           +KK    A I  
Sbjct: 258 LKKELKAANIDI 269


>gi|194333180|ref|YP_002015040.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Prosthecochloris
           aestuarii DSM 271]
 gi|194310998|gb|ACF45393.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Prosthecochloris
           aestuarii DSM 271]
          Length = 694

 Score = 65.9 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 12/100 (12%), Positives = 26/100 (26%), Gaps = 2/100 (2%)

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQY 236
                +L   P      +   ++R                   +F+         G   +
Sbjct: 342 VRASHILLGFPAGDAAARNDAEERAASIMNELKNGKSFDLLAREFSDDPGSAPHGGDLGW 401

Query: 237 LLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDK 275
             +  + P F+      +      P  TQ G+  I +  +
Sbjct: 402 FAKGAMVPDFEKAAFGAAPGRVVGPVATQFGLHIIKVTGR 441



 Score = 48.9 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 2/75 (2%)

Query: 243 HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKH 300
               + L     ++ + P  T+ G   IA+  K   D       +  L       K E+ 
Sbjct: 615 PFLLEALSGMKPSSVSLPVETRSGRALIALESKSYPDGMDPDEARRRLRPLVERAKTEQV 674

Query: 301 EAEYVKKLRSNAIIH 315
             +Y   LR  A I 
Sbjct: 675 IEDYFNALRREATIE 689


>gi|54294744|ref|YP_127159.1| hypothetical protein lpl1821 [Legionella pneumophila str. Lens]
 gi|53754576|emb|CAH16060.1| hypothetical protein lpl1821 [Legionella pneumophila str. Lens]
          Length = 624

 Score = 65.9 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/255 (9%), Positives = 72/255 (28%), Gaps = 8/255 (3%)

Query: 62  LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
             K  +    L +     +        EI++    +       +    +      A+   
Sbjct: 145 FQKEVRQGMLLNQQRFAFMGTSFALSDEIKRFVRLYMQTRDYDYLTVPSDRFEQQAKISE 204

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVK-NDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
             +       +         ++   ++  +D   +      EI +  ++ K+  +     
Sbjct: 205 DDIKSYYNQHHKKFMTSEQVTLDYVLLSMHDIKSQIKISPDEIKSYYEENKSNYLTPAQW 264

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV-----SIGKAQ 235
           R         +   +       + A+E    L K   + +K+ +   D      + G   
Sbjct: 265 RVAHILFAVPENATKEEQDSIKQKADEVYNDLKKHPEQFDKYVASKSDDKLSIANKGILP 324

Query: 236 YLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNT 293
           ++                    + P  T+ G E   +   + +  +    ++  +  Q T
Sbjct: 325 WITGGQNEYDRVLSNLTRPGQISIPVQTKYGYEIFKLIAYKPVTTKSLQEVENIIKDQLT 384

Query: 294 PTKIEKHEAEYVKKL 308
               +   A+ +++L
Sbjct: 385 SDMAQAKYAQVLEQL 399



 Score = 62.4 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 35/317 (11%), Positives = 83/317 (26%), Gaps = 20/317 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+   +   +  L    + I F +  +  Y      S  +  +N + IT        
Sbjct: 1   MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSRQISDAKVIVNDKPITMQAFETNY 60

Query: 61  ALLKLQK--------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
              + Q+            L+   + ++I   +  Q   K G        N   VQ  + 
Sbjct: 61  RRTRAQQDLPQMTAADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQANAAIVQIPQF 120

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
                     +           + +         + +  F     +  +     +     
Sbjct: 121 QEDGHFSAQRYQQALSGALFTPETFQKEVRQGMLLNQQRFAFMGTSFALSDEIKRFVRLY 180

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
           +  R+Y     L    D   Q     +  IK       +      ++      +    I 
Sbjct: 181 MQTRDYDY---LTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTSEQVTLDYVLLSMHDIK 237

Query: 233 KAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICD---KRDLGGEIALKAYLS 289
               +       + ++  +++++N   P   +      A+ +   K +          + 
Sbjct: 238 SQIKIS----PDEIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIKQKADEVY 293

Query: 290 AQNTPTKIEKHEAEYVK 306
                 K  +   +YV 
Sbjct: 294 NDL--KKHPEQFDKYVA 308


>gi|17547900|ref|NP_521302.1| signal peptide protein [Ralstonia solanacearum GMI1000]
 gi|17430206|emb|CAD16969.1| putative peptidyl-prolyl isomerase signal peptide protein
           [Ralstonia solanacearum GMI1000]
          Length = 281

 Score = 65.9 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/286 (11%), Positives = 76/286 (26%), Gaps = 54/286 (18%)

Query: 42  IRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           +   +NG  IT   + + IA    Q    ++ +   Q+LI   L +Q+  K+        
Sbjct: 35  VVALVNGTRITQEQLDRAIAQSGAQANP-QVAQALKQQLIARELFRQQAAKNPAYDKLPA 93

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
           V                                 Q      I    +K++        E 
Sbjct: 94  VKQAM-----------------------------QEAHDAVITQAWLKDNIKPAPITEEQ 124

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
                   + ++  +EY  R +         Q    +++                   ++
Sbjct: 125 VKARYDAIVASLGDKEYKARVIQLGDDVTAAQVLAQLKQ-----------GGDFAKLAQQ 173

Query: 222 FASKIHDVSIGKAQYL---------LESDLHPQFQNLLKKSQNNT--TNPYVTQKGVEYI 270
           +++  + V  G   ++            +L       +         T P         +
Sbjct: 174 YSTAPNKVRGGDMDWVSFKVPVEEGKTQNLPLPLAREIAALGIGAASTAPVEVGSQRYIV 233

Query: 271 AICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            +   R   + G   ++  +       ++E+   + V  L   A I
Sbjct: 234 KVEAARPTQVPGYDTVRPAIRQALETAELERVTVQVVGGLLKAAKI 279


>gi|218509345|ref|ZP_03507223.1| probable peptidyl-prolyl cis-trans isomerase protein [Rhizobium
           etli Brasil 5]
          Length = 147

 Score = 65.9 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 68/145 (46%), Gaps = 9/145 (6%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
                      + +      KR  +AE SR + P   ++ + FA+ + DV++     +L 
Sbjct: 3   YMLQQIIFVIPEAKRGAITGKRKGEAEASRSKFPGC-DQAKVFAATMRDVAVRDLGRMLA 61

Query: 240 SDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI-- 297
            ++ P ++ L+++++ NTT   VT KGVEY+AIC +R +  + A +     ++       
Sbjct: 62  PEIPPDWKPLVEQAKGNTTGTRVTDKGVEYLAICSQRQVSDDQAAEMVFRQEDLDKSKAG 121

Query: 298 ------EKHEAEYVKKLRSNAIIHY 316
                  ++  +Y+ +LR  A I Y
Sbjct: 122 KNGPPENENSKKYLDELRKKAQIAY 146


>gi|46907672|ref|YP_014061.1| protein export protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|226224045|ref|YP_002758152.1| protein secretion PrsA (post-translocation molecular chaperone)
           [Listeria monocytogenes Clip81459]
 gi|254824497|ref|ZP_05229498.1| rotamase [Listeria monocytogenes FSL J1-194]
 gi|254852070|ref|ZP_05241418.1| rotamase [Listeria monocytogenes FSL R2-503]
 gi|254932629|ref|ZP_05265988.1| rotamase [Listeria monocytogenes HPB2262]
 gi|300765586|ref|ZP_07075565.1| protein export protein [Listeria monocytogenes FSL N1-017]
 gi|67461027|sp|Q71ZM6|PRSA1_LISMF RecName: Full=Foldase protein prsA 1; Flags: Precursor
 gi|46880940|gb|AAT04238.1| protein export protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|225876507|emb|CAS05216.1| Putative protein secretion PrsA (post-translocation molecular
           chaperone) [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|258605367|gb|EEW17975.1| rotamase [Listeria monocytogenes FSL R2-503]
 gi|293584188|gb|EFF96220.1| rotamase [Listeria monocytogenes HPB2262]
 gi|293593735|gb|EFG01496.1| rotamase [Listeria monocytogenes FSL J1-194]
 gi|300513687|gb|EFK40755.1| protein export protein [Listeria monocytogenes FSL N1-017]
 gi|332311885|gb|EGJ24980.1| Foldase protein prsA 1 [Listeria monocytogenes str. Scott A]
          Length = 294

 Score = 65.9 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/312 (8%), Positives = 87/312 (27%), Gaps = 47/312 (15%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           ++   K++ +     +  +    S              +   +T  ++ + +        
Sbjct: 1   MTKLKKVMISVIAATLLLLAGCGSSA--------VVKTDAGSVTQDELYEAMKT------ 46

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
                   VQ+L  + + + +   +    ++                  E +    +   
Sbjct: 47  --TYGNEVVQQLTFKKILEDKYTVTEKEVNAEY------------KKYEEQYGDSFESTL 92

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
             +N  K        +  +V+          E ++    +        +  +R +L    
Sbjct: 93  SSNNLTKTSFKENLEYNLLVQKATEANMNVSESKLKTYYKTW----EPDITVRHIL---- 144

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQ 247
                     +   K+ +       K  +  +++++      + G        ++   F+
Sbjct: 145 -------VDDEATAKEIQTKLKNGEKFTDLAKEYSTDTATSTNGGLLDPFGPGEMDETFE 197

Query: 248 NLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS-AQNTPTKIEKHEAEY 304
                 +++++ +    +  G   I +  K + G     KA +  A        ++    
Sbjct: 198 KAAYALENKDDVSGIVKSTYGYHLIQLVKKTEKGTYAKEKANVKAAYIESQLTTENMTAA 257

Query: 305 VKKLRSNAIIHY 316
           +KK    A I  
Sbjct: 258 LKKELKAANIDI 269


>gi|226227553|ref|YP_002761659.1| putative peptidyl-prolyl cis-trans isomerase [Gemmatimonas
           aurantiaca T-27]
 gi|226090744|dbj|BAH39189.1| putative peptidyl-prolyl cis-trans isomerase [Gemmatimonas
           aurantiaca T-27]
          Length = 469

 Score = 65.9 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/289 (10%), Positives = 63/289 (21%), Gaps = 43/289 (14%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELI 81
           L +  +V        A +  +        ++   +++ +A  +          IA +  +
Sbjct: 6   LSVLALVAFAVACGAASNPDVAAKAGDTELSSARLAEVLAQSQAPLEKDVARNIA-ELWV 64

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
              L       +    D+  +         N                             
Sbjct: 65  NYQLVGLAAANNDSLSDAKVMQEALWSQIDN----------------------------- 95

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
                +    F          +     + + ++      R +L     N    Q  V K+
Sbjct: 96  -----IRVKKFYDNVSKGWDSLSPGTDESRYMSGEALAARHILVKTEPNATPEQIGVAKK 150

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNP 260
             D   +            K          G         + P+F+   L       +  
Sbjct: 151 KADGILAEATTANFAVLAAKSDEPGAKERGGDLGLFQRGMMVPEFEKCLLVLKPGEISKE 210

Query: 261 Y-VTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
              T  G   I             +    +       +   E+ Y+ KL
Sbjct: 211 VCQTSFGFHIIY------RSPFADVAEKFAPVAKQRNVAIAESTYLAKL 253


>gi|294788198|ref|ZP_06753441.1| putative signal peptide protein [Simonsiella muelleri ATCC 29453]
 gi|294483629|gb|EFG31313.1| putative signal peptide protein [Simonsiella muelleri ATCC 29453]
          Length = 292

 Score = 65.9 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 41/311 (13%), Positives = 87/311 (27%), Gaps = 35/311 (11%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING----- 70
           +   F L    ++  +S   +A +     T+NG  I   D+ +R   ++           
Sbjct: 1   MKKTFKLTTVAVLFALSGSLFAAT---VVTVNGVKIDSSDVERRAENVQKNTQGQISDGP 57

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
           +L +    ELI E L  QE ++  +   S+          +      +  + F       
Sbjct: 58  QLRQFITNELITEQLVVQEAKRLKLDKSSDYQAAEAEALKQAKAQGLDKQADFKQNWADY 117

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                           ++   +       +    A  Q+  N     Y   + +      
Sbjct: 118 -------------QNRLLMLAYAANLAKQQPISEAAAQQQYNQIKSRYAGSSEIQLGEIV 164

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ--YLLESDLHP---- 244
             +                 +  K  +  +K++      + G     Y+   DL      
Sbjct: 165 TNKPADAEAA-----INDLTKKKKFSDVAKKYSMSKSSQTSGGIVPEYVALPDLKDGNNL 219

Query: 245 QFQNLLKKSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAE 303
            +Q +   S+   T  P         + + DKR +         + A       ++  + 
Sbjct: 220 VYQAVNGLSKGQFTKTPVKDGNVSLVLYVNDKRAINV--PTFNEMKASIVQQMEDEQLSL 277

Query: 304 YVKKLRSNAII 314
            +  L   A I
Sbjct: 278 AIDNLGKKAKI 288


>gi|268592032|ref|ZP_06126253.1| peptidyl-prolyl cis-trans isomerase D [Providencia rettgeri DSM
           1131]
 gi|291312424|gb|EFE52877.1| peptidyl-prolyl cis-trans isomerase D [Providencia rettgeri DSM
           1131]
          Length = 651

 Score = 65.9 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/398 (8%), Positives = 92/398 (23%), Gaps = 85/398 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T  +  +  +    +++ F +  ++       S+     +NG+ I+   + +  
Sbjct: 29  MMENLRTKANSPLLKIILALIILSFVLGGVMMGGLGGNSANNAAEVNGQSISREQLQQAF 88

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              +                       L + A+  LI   L  Q   +  ++     +  
Sbjct: 89  QQERQSLQEYLGDKFSEVASNEESMNLLRRQALDNLINNELINQYANELQLSASDQQIEQ 148

Query: 105 FFVQH---ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------ 149
           +         +    +E +   L +  I  +     +        + K            
Sbjct: 149 YIFSMPVFQTDGRFDSEKYREILSRNNINADSLAAQIRQDLTRAQLGKTFTGTDFALPSE 208

Query: 150 ---------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI- 187
                                 +   K    E E+ A     +N  +    ++     + 
Sbjct: 209 VKAYAELFMQEREIRTAILDLAEVQAKQTASEEELKAYYDANQNSFISPEKVQVSYVEMD 268

Query: 188 -----------------------------PDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
                                               Q   +K   D      +       
Sbjct: 269 AASMPPATVSAEEVKAYYDQNLKNYTQAEQKQYSMIQVASEKEANDILNELKQGADFATL 328

Query: 219 LEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
             + ++        G   ++  +    +        +   + P  +Q       + D + 
Sbjct: 329 ATEKSTDKFSAGQKGLIGWMEAASTPSEIVAAKLTEKGQLSAPVKSQNSYVIFRLDDIKP 388

Query: 278 --LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             +     ++  +       K  K   +  +K+   A 
Sbjct: 389 ESIKPFEQVEESIKTSLLQDKNIKQFYDLQQKVSEAAT 426


>gi|317495597|ref|ZP_07953965.1| ppic-type ppiase domain-containing protein [Gemella moribillum
           M424]
 gi|316914411|gb|EFV35889.1| ppic-type ppiase domain-containing protein [Gemella moribillum
           M424]
          Length = 308

 Score = 65.9 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/313 (10%), Positives = 90/313 (28%), Gaps = 29/313 (9%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           ++ F K +    + +    +   S  +  +SS+         +T+ DI + I        
Sbjct: 1   MNKFKKAILPVALSVSVIGLAGCSGGTKYISSKA------GDVTEKDIVESI-------G 47

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             +L K A   +I + L     +K     D   +     +     G   +       +Q 
Sbjct: 48  ASQLSKTATSMMIQKVLL----DKYKGKIDEKAIEEQLQKAQTQYGGKEKF------EQL 97

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
           +    F        +     +   +  Y     +      +          I   + S  
Sbjct: 98  LKQQGFTLDKYKDGLKVKAAQTLLINDYTGTNEDKLKENYEKNKHQYHLAHILISVKSNS 157

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESD---LHP 244
           +    +    +K+ ++  +            ++ +    +  + G   +  + D   +  
Sbjct: 158 NPNGLSDEDAKKKAEELHKKIKDGEDFATLAKENSNDTANASNGGDLGWSSKEDNSFVKE 217

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP--TKIEKHEA 302
             +     +++  ++   T  G   I + D++D   +                K     +
Sbjct: 218 FKEAAYALTKDKVSDVVKTSFGYHIIKVLDEKDATFDEMKATLAEKAAEEAVKKDSTVVS 277

Query: 303 EYVKKLRSNAIIH 315
           + +KKL     + 
Sbjct: 278 KALKKLFEEYNVK 290


>gi|149924625|ref|ZP_01912979.1| Parvulin-like peptidyl-prolyl isomerase [Plesiocystis pacifica
           SIR-1]
 gi|149814510|gb|EDM74097.1| Parvulin-like peptidyl-prolyl isomerase [Plesiocystis pacifica
           SIR-1]
          Length = 105

 Score = 65.9 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 7/81 (8%), Positives = 20/81 (24%), Gaps = 1/81 (1%)

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
            +++   +++I    E         +  +  +        G      +  +   F+    
Sbjct: 22  TRSKAEAEQQINALAEQIRGGADFGDLAKANSDCPSGAKGGDLGSFGKGQMVKPFEVAAF 81

Query: 252 -KSQNNTTNPYVTQKGVEYIA 271
                  +    T  G   I 
Sbjct: 82  GMDVGQVSGVIETDFGYHIIK 102


>gi|167839788|ref|ZP_02466472.1| peptidylprolyl isomerase [Burkholderia thailandensis MSMB43]
          Length = 237

 Score = 65.5 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 46/174 (26%), Gaps = 5/174 (2%)

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           ++  +          +     +       R  ++                 +++  + A 
Sbjct: 51  LLARELTHLPEPTRDDCERYYRNHAERFRRRDIVHASHILFAVTDATPLAPLRREAEAAL 110

Query: 207 ESRLRLPKDCNK-LEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKKSQNNTTNPYVT 263
              L  P+       + ++       G    LL  D  P+F                  T
Sbjct: 111 ARALAAPQTFETLARELSNCPSAAVGGNLGQLLRGDSVPEFDAAVFDTPELGVLPRLVNT 170

Query: 264 QKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           + G   + I  +         A+ A ++A        K   +YV  L S A I 
Sbjct: 171 RFGFHIVRIERREPGDPVPFDAVAADIAAFLAERVRHKAIQQYVTILASRARIE 224


>gi|154253607|ref|YP_001414431.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Parvibaculum
           lavamentivorans DS-1]
 gi|154157557|gb|ABS64774.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Parvibaculum
           lavamentivorans DS-1]
          Length = 631

 Score = 65.5 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 29/395 (7%), Positives = 78/395 (19%), Gaps = 86/395 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVI----TDGDI 56
           M   +  + S ++  +    + + F +  I    +          +  + I       ++
Sbjct: 1   MLDSLRRNASGWVAKVLIGLLALSFAVWGIADIFTGFGGDT-VAEVGDQKIDAATYQVEL 59

Query: 57  SKRIALLKL---------QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
              +              Q     +++ A+  LI            G+      V     
Sbjct: 60  RNEMNQFSQRLGQPLSLDQARQFGIDRAALSRLISLAALDGAASDLGLAVGDEAVGIDIT 119

Query: 108 QHAR----NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV--------------- 148
                         + F   L + GI +  F +          V+               
Sbjct: 120 TDPNLQGPFGRFDRDLFRQSLQQNGISEERFIEQRRRAMSRKQVIEVIQVGVAAPEALIE 179

Query: 149 ------------------KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS---- 186
                             ++         E  +    +   +           +      
Sbjct: 180 MVSRFQEETRVAGYVILPQSLVGEIADPDEETVQKFYEAGASAFTLPETRDFSIMVLEPE 239

Query: 187 -----IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA--SKIHDVSIG------- 232
                +  ++   Q   ++R  + +    R         +      +  +  G       
Sbjct: 240 DVTRTMAVSEEDLQAAYEQRRGEYDVPERRDVHQITFASEEEANEALTKLRGGENVETVV 299

Query: 233 ----------KAQYLLESDL--HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
                         +   D+                 + P     G   + +        
Sbjct: 300 KGLGLTMKDVDLGKVSRDDMLSPELADAAFSLEGTGYSEPVRGPLGWSILHVTGIEPGKP 359

Query: 281 --EIALKAYLSAQNTPTKIEKH---EAEYVKKLRS 310
                +K  L A                 ++  R+
Sbjct: 360 STYEDVKEELRAAIELELARDQIYDIQNTIEDARA 394


>gi|240142444|ref|YP_002966954.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase
           [Methylobacterium extorquens AM1]
 gi|240012388|gb|ACS43613.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase
           [Methylobacterium extorquens AM1]
          Length = 266

 Score = 65.5 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 4/88 (4%)

Query: 212 LPKDCNKLEKFASKIHD-VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEY 269
             +  +     +S      + G   + L   + P+F   +   S    + P  +Q G   
Sbjct: 154 GERFEDVARSVSSDRSTVPAGGDLGWFLRDRMVPEFGTAVAALSPGALSEPVRSQFGWHL 213

Query: 270 IAICDKRD--LGGEIALKAYLSAQNTPT 295
           I + + R   +         + AQ    
Sbjct: 214 IRLDETRPQTIPPYENDAQRVRAQLFQK 241


>gi|33597580|ref|NP_885223.1| peptidyl-prolyl cis-trans isomerase D [Bordetella parapertussis
           12822]
 gi|33574008|emb|CAE38331.1| peptidyl-prolyl cis-trans isomerase D [Bordetella parapertussis]
          Length = 671

 Score = 65.5 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 69/241 (28%), Gaps = 22/241 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T    +++L+    ++  F +V +  Y S+        T+ G+ +T  +  +  
Sbjct: 21  MFEIIRTH-RRWMQLILLLLIVPSFMLVGVQGYDSFINREPELATVAGQPVTRSEFDQAH 79

Query: 61  ALLKLQKIN-------------GELEKIAVQELIVETLKKQEIEKSGITFDS---NTVNY 104
                Q                  + +  + +LI + L       +G +           
Sbjct: 80  RNQLEQLRQRLGSQFDPAMIDTPAMREQLLNQLIDQRLLAVVAADNGFSVSDGTLRNTIA 139

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK-----NDFMLKYGNL 159
              Q   N   S E +   L  QG+    F+  L        V+           +    
Sbjct: 140 AIPQVQDNGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVARVLDPISQSASVPAEVARS 199

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
                  ++ ++         R  +   P +        Q++++  E+ + +        
Sbjct: 200 VEAALTQRRTVQLRQFAASDFRAKVTVSPQDIQAWYDANQEQLRVPEQVQAQYLVLDEAA 259

Query: 220 E 220
            
Sbjct: 260 A 260



 Score = 62.4 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/243 (9%), Positives = 63/243 (25%), Gaps = 11/243 (4%)

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             +  +        E+ +S     +        Q A +   +    S    +     N  
Sbjct: 181 RVLDPISQSASVPAEVARSVEAALTQRRTVQLRQFAASDFRAKVTVSPQDIQAWYDANQE 240

Query: 135 KQYLAIQSIWPDVV--KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
           +  +  Q     +V  +          + +I +  ++ K+   +    R     I     
Sbjct: 241 QLRVPEQVQAQYLVLDEAAATEGVQVKDEDIASYYEQNKSRFGQPERRRVSHIMISIPPG 300

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-----SKIHDVSIGKAQYLLESDLHPQFQ 247
            ++   +     A+E   +   D     + A             G   +       P  Q
Sbjct: 301 ASEEARKAAAAKAQEIAAQAAADPAGFAELARKNSQDTGSAAQGGDLGWAPLP--APLQQ 358

Query: 248 NLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYV 305
                +++  +    T      + + D +    +    +K  + ++          A+  
Sbjct: 359 AAQALAKDQVSGVVDTPTAFHILKVTDFQPGSVKPLSEVKDEVVSEIRKQLASARFADMA 418

Query: 306 KKL 308
             +
Sbjct: 419 TDM 421


>gi|33601983|ref|NP_889543.1| peptidyl-prolyl cis-trans isomerase D [Bordetella bronchiseptica
           RB50]
 gi|33576421|emb|CAE33499.1| peptidyl-prolyl cis-trans isomerase D [Bordetella bronchiseptica
           RB50]
          Length = 671

 Score = 65.5 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 69/241 (28%), Gaps = 22/241 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T    +++L+    ++  F +V +  Y S+        T+ G+ +T  +  +  
Sbjct: 21  MFEIIRTH-RRWMQLILLLLIVPSFMLVGVQGYDSFINREPELATVAGQPVTRSEFDQAH 79

Query: 61  ALLKLQKIN-------------GELEKIAVQELIVETLKKQEIEKSGITFDS---NTVNY 104
                Q                  + +  + +LI + L       +G +           
Sbjct: 80  RNQLEQLRQRLGSQFDPAMIDTPAMREQLLNQLIDQRLLAVVAADNGFSVSDGTLRNTIA 139

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK-----NDFMLKYGNL 159
              Q   N   S E +   L  QG+    F+  L        V+           +    
Sbjct: 140 AIPQVQDNGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVARVLDPISQSASVPAEVARS 199

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
                  ++ ++         R  +   P +        Q++++  E+ + +        
Sbjct: 200 VEAALTQRRTVQLRQFAASDFRAKVTVSPQDIQAWYDANQEQLRVPEQVQAQYLVLDEAA 259

Query: 220 E 220
            
Sbjct: 260 A 260



 Score = 62.4 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 23/243 (9%), Positives = 63/243 (25%), Gaps = 11/243 (4%)

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             +  +        E+ +S     +        Q A +   +    S    +     N  
Sbjct: 181 RVLDPISQSASVPAEVARSVEAALTQRRTVQLRQFAASDFRAKVTVSPQDIQAWYDANQE 240

Query: 135 KQYLAIQSIWPDVV--KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
           +  +  Q     +V  +          + +I +  ++ K+   +    R     I     
Sbjct: 241 QLRVPEQVQAQYLVLDEAAATEGVQVKDEDIASYYEQNKSRFGQPERRRVSHIMISIPPG 300

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-----SKIHDVSIGKAQYLLESDLHPQFQ 247
            ++   +     A+E   +   D     + A             G   +       P  Q
Sbjct: 301 ASEEARKAAAAKAQEIAAQAAADPAGFAELARKNSQDTGSAAQGGDLGWAPLP--APLQQ 358

Query: 248 NLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYV 305
                +++  +    T      + + D +    +    +K  + ++          A+  
Sbjct: 359 AAQALAKDQVSGVVDTPTAFHILKVTDFQPGSVKPLAEVKDEVVSEIRKQLASARFADMA 418

Query: 306 KKL 308
             +
Sbjct: 419 TDM 421


>gi|253581345|ref|ZP_04858571.1| peptidylprolyl isomerase [Fusobacterium varium ATCC 27725]
 gi|251836709|gb|EES65243.1| peptidylprolyl isomerase [Fusobacterium varium ATCC 27725]
          Length = 584

 Score = 65.5 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 74/295 (25%), Gaps = 31/295 (10%)

Query: 41  RIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
           +    +  EVIT  D+ +   + +   +  +  K    E I E  K              
Sbjct: 193 KPLAEVKNEVIT--DLKQTKGIEEYILLLNKARKEMKLENISEEYKAYVERNEMEEDGFA 250

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI----------------- 143
             N    +   N             +        +  LA  +I                 
Sbjct: 251 ISNVEMAKRTLNNLFITNGDREKARELSKEYYKAQIKLAKIAIERGITVDETLPLDYKFE 310

Query: 144 -WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
            +   +  +        + ++    +K K +        + +  +  +         K  
Sbjct: 311 EYKKGLFENIKNSLNPTDAQLKEYFEKNKLVYDTFPSADSYIAILKVDPSAEDKAAAKTR 370

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN--TTNP 260
            +     L         +K +      + G   +  + D+   FQ  +   +       P
Sbjct: 371 AEELLKTLTPKNFAEVAKKNSDGPSSPNGGDLGWFSKKDMVEPFQKAVFAGEVGKIYPEP 430

Query: 261 YVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             T  G   I I D++    +   +A  S      KI +            A I 
Sbjct: 431 VETIFGQHLIYIEDRK----DDEERAKASHILIVPKISEATLNT-----KKAEIE 476


>gi|240851485|ref|ZP_04752236.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus minor 202]
 gi|240310003|gb|EER48295.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus minor 202]
          Length = 624

 Score = 65.5 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/283 (8%), Positives = 76/283 (26%), Gaps = 23/283 (8%)

Query: 53  DGDISKRIALLKLQKINGELEKIAV---------------QELIVETLKKQEIEKSGITF 97
             +I       +  K +  L + A+               + +I   +++  I  S    
Sbjct: 117 KSEIVHDANFQQNGKFDNNLYQQALRNAGLTPDGYAAVVREGMIFSQIEEGIINTSFDLP 176

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH---FKQYLAIQSIWPDVVKNDFML 154
                    +   R+  L+    +     Q +       F      Q + P+    ++++
Sbjct: 177 AQQEALAKLLFQKRDVRLATYSLADEAKNQTVSPEELQSFYDAHKKQLLTPETFTVEYLV 236

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
                ++E        +  T  +      +     N    Q   +       +       
Sbjct: 237 -LTPKDVEKRIQITDEQIATYYDKNKAQFVTKGEANLAHIQVANEAEANAIAQQLNNGAD 295

Query: 215 DCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAI 272
                ++ ++  +     G   +         F+N   +      + P         I +
Sbjct: 296 FAALAKEKSTDKLSAAQGGNLGWAKAGTFPQAFENAANQLQVGQVSQPIKIDNAYHIIKV 355

Query: 273 CDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            D++  ++     +K  ++       +    +   + + ++A 
Sbjct: 356 IDRKAENVIPLAQVKDKITETIRKELLASEYSTVARDMANSAF 398



 Score = 39.7 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 68/238 (28%), Gaps = 20/238 (8%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVI---TDGDIS 57
           M  K     +         F L+    V          +      +NGE I   T  D  
Sbjct: 1   MIEKWHDRTNSL--GFKIVFTLVSLSFVLGGIGSGLVATDDSAVKVNGEGISQRTFTDAK 58

Query: 58  KRIALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
            R   +   +  G             E  +  +  LI + L +Q  +   +    + +  
Sbjct: 59  NRQQNILYSQKGGEAWDLLDKPEYAREFNQSVLNSLINDELLRQYAKSLKLDVGVDQIKS 118

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
             V  A        D + +             Y A   +   ++ +       N   ++P
Sbjct: 119 EIVHDANFQQNGKFDNNLYQQALRNAGLTPDGYAA--VVREGMIFSQIEEGIINTSFDLP 176

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           A ++ +  +  ++  +R   +S+ D         ++     +  + +L        ++
Sbjct: 177 AQQEALAKLLFQKRDVRLATYSLADEAKNQTVSPEELQSFYDAHKKQLLTPETFTVEY 234


>gi|305666291|ref|YP_003862578.1| peptidylprolyl cis-trans isomerase [Maribacter sp. HTCC2170]
 gi|88708283|gb|EAR00520.1| peptidylprolyl cis-trans isomerase [Maribacter sp. HTCC2170]
          Length = 706

 Score = 65.5 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/255 (10%), Positives = 58/255 (22%), Gaps = 16/255 (6%)

Query: 51  ITDGDISKRIALLKLQKINGELE----------------KIAVQELIVETLKKQEIEKSG 94
           IT  +I   I   K      E                       E I       E  +  
Sbjct: 215 ITKSEIQSYINSHKEDFKQEEARDIQYVYFEEKASAEDENAVKDETIKLLEDTVEYREQT 274

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
              D+ T        A      ++     + K     +       +     +        
Sbjct: 275 DKMDTITGFRTTSDIADFLDRKSDIKFDTIYKAKRDLSTVFADTLVTLKMGETYGPYRDG 334

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
            +  +   +          +      +    +        +   +       E++ +   
Sbjct: 335 DFFKVSKMVNKKTNGSAKASHILIKWKGAERAEATVTRSKEEAEEMAKGILAETKKKDAV 394

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICD 274
                   +      + G   Y  E  +  +F + +  ++  T +   T  G   + I D
Sbjct: 395 FVELARDNSEGPSAPNGGDLGYFQEGRMVAEFNDFVFNNKVGTIDLVETALGYHIVKIDD 454

Query: 275 KRDLGGEIALKAYLS 289
           K D+     L   + 
Sbjct: 455 KEDIYQIATLAREIE 469


>gi|292493615|ref|YP_003529054.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
           halophilus Nc4]
 gi|291582210|gb|ADE16667.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
           halophilus Nc4]
          Length = 320

 Score = 65.5 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/288 (9%), Positives = 76/288 (26%), Gaps = 37/288 (12%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK-----IAVQELIVETLKKQEIEK 92
              ++        +T  D    +A +  Q   G L         + +L V  +  QE  +
Sbjct: 31  SGEKVLIQQGEITVTQADFDAELAEIPAQHHAGILASGKRIHQLLDKLFVYRVLAQETRE 90

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
            G+  D        +      G +              D         Q+          
Sbjct: 91  LGLDKDPLLRQQIALAVEEKLGKARLKHLREQALAASPDFEALARERYQANQEQY----- 145

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
                                   +  +  +L    +   +    + ++++    +  + 
Sbjct: 146 --------------------QLPEQVKVSHILIKAEERSEEEARQLAEKVRKLALAEEK- 184

Query: 213 PKDCNKLEKFASKIH-DVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEY 269
                   +++     + + G   ++        F+      K   N +    ++ G   
Sbjct: 185 -PFAELAVEYSEDPSVERNQGDLGFIARGKTVKPFEEAAFALKQPGNISPVVKSRFGFHI 243

Query: 270 IAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           I + +++         +K  L  +   T + K    ++ ++R+   I 
Sbjct: 244 IRLEERQPAQVQPFDQVKEKLVQEAKETYLNKVVQTHLNQIRNAEGIQ 291


>gi|88813286|ref|ZP_01128525.1| peptidyl-prolyl cis-trans isomerase C [Nitrococcus mobilis Nb-231]
 gi|88789458|gb|EAR20586.1| peptidyl-prolyl cis-trans isomerase C [Nitrococcus mobilis Nb-231]
          Length = 93

 Score = 65.5 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 10/80 (12%), Positives = 26/80 (32%), Gaps = 1/80 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           +++  + +E             + +        G      +  + P+F + +     N  
Sbjct: 14  EQQCLELKERIDNGEDFAAIAREHSKCPSGQKGGDLGEFTQGQMVPEFDKVVFNDELNKV 73

Query: 258 TNPYVTQKGVEYIAICDKRD 277
             P  TQ G   + + ++ D
Sbjct: 74  HGPVRTQFGYHLLEVLERTD 93


>gi|32475387|ref|NP_868381.1| peptidyl-prolyl cis-trans isomerase C2 [Rhodopirellula baltica SH
           1]
 gi|32445928|emb|CAD78659.1| peptidyl-prolyl cis-trans isomerase C2 [Rhodopirellula baltica SH
           1]
 gi|327537999|gb|EGF24693.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopirellula
           baltica WH47]
          Length = 93

 Score = 65.5 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 25/80 (31%), Gaps = 1/80 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             ++  +D ++   +         +F+S     S G         +  +F + +      
Sbjct: 12  ETEEACQDLKDQIEKGQDFGAIAAEFSSCPSGKSGGALGTFSPGQMVKEFDEVVFSGELG 71

Query: 256 NTTNPYVTQKGVEYIAICDK 275
               P  TQ G   I I  +
Sbjct: 72  KVHGPVKTQFGYHLIEITQR 91


>gi|254507758|ref|ZP_05119889.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus 16]
 gi|219549283|gb|EED26277.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus 16]
          Length = 364

 Score = 65.5 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/352 (9%), Positives = 82/352 (23%), Gaps = 89/352 (25%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + SY      +     +    I  G+  +  
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVGGAGNT-AAKVGNVEIDRGEFEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                       K  +  ++ + L +Q     G+      V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPSYVESFRKSVLDRMVNDLLLEQHAASLGLRVSDAQVRT 119

Query: 105 FFVQHARNTGLSAEDFSSFL---DKQGIGDNHFKQYLAIQSIWPDVVKN----------- 150
             V+  +       D   +     + G     F +YL    +   ++             
Sbjct: 120 MIVEMPQFQVDGKFDQEIYQSSLRRAGFTPESFAEYLRRDLVRNQLLTAIQASDFSLPAE 179

Query: 151 ----------------------DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                 DF  K    + EI    ++      R   ++     + 
Sbjct: 180 VEAQAKLLTQTREVQTLSLPLDDFAAKVELSDDEIQGYYEQNSERYTRPEQVKVAYIELS 239

Query: 189 DNKLQNQGFV---------------------------------QKRIKDAEESRLRLPKD 215
             KL++   V                                 Q + +   +        
Sbjct: 240 AQKLKDAITVSDEDAKKYFEEHLDKYSSEEQRRVSHILVEGDDQAKAQAILDELNAGTDF 299

Query: 216 CNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQ 264
               E+ +         G   ++    + P F+      K+  + T    + 
Sbjct: 300 AALAEEKSDDFGSASEGGSLGWIERDVMDPAFEEAAFALKNVGDVTGLVKSD 351


>gi|254480567|ref|ZP_05093814.1| SurA N-terminal domain family protein [marine gamma proteobacterium
           HTCC2148]
 gi|214039150|gb|EEB79810.1| SurA N-terminal domain family protein [marine gamma proteobacterium
           HTCC2148]
          Length = 626

 Score = 65.5 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 61/199 (30%), Gaps = 6/199 (3%)

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
                        + F    A++  + ++  + F       E  I    ++    +  + 
Sbjct: 207 SDPQIQQYYADNSDSFLSEEAVELDYIELRSDSFREAVE--EQMIVDAYEQEIANSQYQT 264

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYL 237
             R           ++    Q+R+ DA+             ++ +  I    S G   + 
Sbjct: 265 ENRVSHILFEQGGDESDSSYQERLSDAQSRLAAGEAFAAVAQELSDDIGSASSGGDLGFT 324

Query: 238 LESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTP 294
                  + +  + +   N  + P VT  G   I + ++R  +      L+A L  Q   
Sbjct: 325 SGDAFPAEMEEAIAELELNGISAPVVTDAGTHIILLTERRSGEAPPLEELRAGLEEQLAM 384

Query: 295 TKIEKHEAEYVKKLRSNAI 313
           ++        V+ L+  A 
Sbjct: 385 SEARVELLRMVETLKDLAF 403



 Score = 60.1 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 14/139 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +    +  +    +++ F    I S       S     +NGE IT  ++ + +
Sbjct: 1   MLQDIRKNSQGTLAKIIVGIIVVAFAGFGIESILLGGGGSA-VAEVNGEEITPQELQQAV 59

Query: 61  ALLKLQ-------------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
              K Q               +  L + A+Q LI   L  Q  +  G+T     V     
Sbjct: 60  NNQKRQLISMMGENLDPAMLDDQLLSQQAMQTLISRKLLVQSADDMGLTVSDTQVGALIG 119

Query: 108 QHARNTGLSAEDFSSFLDK 126
              +           +  +
Sbjct: 120 SMEQFQLDGQFSPELYRAR 138


>gi|33592803|ref|NP_880447.1| peptidyl-prolyl cis-trans isomerase D [Bordetella pertussis Tohama
           I]
 gi|33572451|emb|CAE42019.1| peptidyl-prolyl cis-trans isomerase D [Bordetella pertussis Tohama
           I]
 gi|332382216|gb|AEE67063.1| peptidyl-prolyl cis-trans isomerase D [Bordetella pertussis CS]
          Length = 651

 Score = 65.5 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 69/241 (28%), Gaps = 22/241 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T    +++L+    ++  F +V +  Y S+        T+ G+ +T  +  +  
Sbjct: 1   MFEIIRTH-RRWMQLILLLLIVPSFMLVGVQGYDSFINREPELATVAGQPVTRSEFDQAH 59

Query: 61  ALLKLQKIN-------------GELEKIAVQELIVETLKKQEIEKSGITFDS---NTVNY 104
                Q                  + +  + +LI + L       +G +           
Sbjct: 60  RNQLEQLRQRLGSQFDPAMIDTPAMREQLLNQLIDQRLLAVVAADNGFSVSDGTLRNTIA 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK-----NDFMLKYGNL 159
              Q   N   S E +   L  QG+    F+  L        V+           +    
Sbjct: 120 AIPQVQDNGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVARVLDPISQSASVPAEVARS 179

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
                  ++ ++         R  +   P +        Q++++  E+ + +        
Sbjct: 180 VEAALTQRRTVQLRQFAASDFRAKVTVSPQDIQAWYDANQEQLRVPEQVQAQYLVLDEAA 239

Query: 220 E 220
            
Sbjct: 240 A 240



 Score = 61.6 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/243 (9%), Positives = 62/243 (25%), Gaps = 11/243 (4%)

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             +  +        E+ +S     +        Q A +   +    S    +     N  
Sbjct: 161 RVLDPISQSASVPAEVARSVEAALTQRRTVQLRQFAASDFRAKVTVSPQDIQAWYDANQE 220

Query: 135 KQYLAIQSIWPDVV--KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
           +  +  Q     +V  +          + +I +  ++ K+   +    R     I     
Sbjct: 221 QLRVPEQVQAQYLVLDEAAATEGVQVKDEDIASYYEQNKSRFGQPERRRVSHIMISIPPG 280

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-----SKIHDVSIGKAQYLLESDLHPQFQ 247
            ++   +     A+E   +   D     + A             G   +       P  Q
Sbjct: 281 ASEEARKAAAAKAQEIAAQAAADPAGFAELARKNSQDTGSAGQGGDLGWAPLP--APLQQ 338

Query: 248 NLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYV 305
                +++  +    T      + + D +    +    +K  +  +          A+  
Sbjct: 339 AAQALAKDQVSGVVDTPTAFHILKVTDFQPGSVKPLAEVKDEVVGEIRKQLASARFADMA 398

Query: 306 KKL 308
             +
Sbjct: 399 TDM 401


>gi|187478286|ref|YP_786310.1| peptidyl-prolyl cis-trans isomerase [Bordetella avium 197N]
 gi|115422872|emb|CAJ49400.1| peptidyl-prolyl cis-trans isomerase [Bordetella avium 197N]
          Length = 93

 Score = 65.5 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 11/81 (13%), Positives = 27/81 (33%), Gaps = 1/81 (1%)

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NN 256
            + R ++ + +            + +S       G        ++  +F  ++  +  N 
Sbjct: 13  TEARAQELKTAIQNGADFAEVARENSSCPSARQGGDLGTFGPGEMVREFDQVVFSAPVNE 72

Query: 257 TTNPYVTQKGVEYIAICDKRD 277
              P  TQ G   + +  +RD
Sbjct: 73  VQGPVKTQFGYHLVEVTSRRD 93


>gi|221066302|ref|ZP_03542407.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni KF-1]
 gi|220711325|gb|EED66693.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni KF-1]
          Length = 263

 Score = 65.5 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 97/296 (32%), Gaps = 48/296 (16%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--GELEKIAVQELIV 82
                ++ + + + S++    +NG+ +    ++   A ++        E++K+   E+I 
Sbjct: 11  IVGATVLGFAALSASAQNVAIVNGKAVPMARVNALKAQIEASGQPVAPEMDKMIKDEVIA 70

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
             +  QE  + G+                                          +A Q+
Sbjct: 71  REVFMQEANRRGLAASEAYKQQ-------------------------------MDMARQT 99

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           +    +  DF  K    + E  A   K       +    + +    +++ +      K  
Sbjct: 100 VLIRALFEDFQKKNPVTDAEAKAEYDKFVEANGGKEYKASHILVESEDRAKAIIAEVKAG 159

Query: 203 KDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN- 259
           K  E+            +K +         G   +   ++  P+F + L+K  +   T+ 
Sbjct: 160 KKFEDI----------AKKESKDPGSGARGGDLDWANPNNYVPEFTEALIKLKKGEMTDA 209

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           P  +Q G   I + D+R    E+     +  Q T    ++   ++  +LR +A I 
Sbjct: 210 PVKSQFGWHIIRMDDERQA--EMPKFEDVKPQITQQLQQQKLQQFQDQLRKSAKIQ 263


>gi|254564031|ref|YP_003071126.1| peptidyl-prolyl cis-trans isomerse D [Methylobacterium extorquens
           DM4]
 gi|254271309|emb|CAX27321.1| putative peptidyl-prolyl cis-trans isomerse D [Methylobacterium
           extorquens DM4]
          Length = 634

 Score = 65.5 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/403 (8%), Positives = 88/403 (21%), Gaps = 90/403 (22%)

Query: 1   MTSKVFTSLSDFI-KLLTTYFVLIIFCIVPIVSYKSW--AMSSRIRTTINGEVITDGDIS 57
           M   + ++   ++ K++ +     +   V I   + +    SS    T+    I+  ++ 
Sbjct: 1   MLQSIRSASQHWLGKVVLSVIFTFLIAGVAIFGVEEFFRGGSSTAVATVGKTPISAEEVR 60

Query: 58  KRIALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
                   +                  LE+  + +LI E    Q+    G+     TV  
Sbjct: 61  TAYQNQLQRYQAQLKRTLTPDQARAMGLERQVLAQLITEAALDQKTTDLGLAVSDATVLR 120

Query: 105 FFVQHARNTGLS-----------------AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
                      +                  E       +  I        +  +   P  
Sbjct: 121 AIQDEPSFKNANGSFDRALFFQTLQRAGLNEAMFVREQRSVIARLQLADAIVAEMPVPQA 180

Query: 148 VKNDFML-------------------KYGNLEMEIPANKQKMKNITVREYLIR------- 181
           ++                        +      E      +    + R    R       
Sbjct: 181 IREAVHRYSTERRDAAVLTLAPSAAGEIPAPTDEALNAYYENNKASFRAPEYRSLNLLVL 240

Query: 182 ------------------TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
                                 +        +  +Q+     E +           E   
Sbjct: 241 DPAALAKPDEVSDDEARKVYEANPGRFGKAERRTIQQISFPDEATAAEARAKIESGETPF 300

Query: 224 SKIHDVSIGK-----AQYLLESDL--HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
             +               + +++L             Q   + P   + G   + +    
Sbjct: 301 ETVAADRGLDPKQLDLGTMTKAELFDPAVGNAAFALEQGKVSEPVKGRFGTVLLRVTAIE 360

Query: 277 D--LGGEIALKAYLSAQNTPTKIE----KHEAEYVKKLRSNAI 313
              +     +K  +  +    ++         + ++  R++A 
Sbjct: 361 PGTVKPFDEVKDEIRKEIALKRVRDGGFDKVQDAIEDARASAK 403


>gi|225075250|ref|ZP_03718449.1| hypothetical protein NEIFLAOT_00253 [Neisseria flavescens
           NRL30031/H210]
 gi|224953425|gb|EEG34634.1| hypothetical protein NEIFLAOT_00253 [Neisseria flavescens
           NRL30031/H210]
          Length = 617

 Score = 65.5 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 63/260 (24%), Gaps = 11/260 (4%)

Query: 57  SKRIALLKLQKINGELEKIAVQ-ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
            + +  ++ Q     L  +     L+ +   +Q I  +  T    +  +     A    +
Sbjct: 132 DQFVEDIREQFQLQNLLNLVQNGALVSDAQARQLINLTQATRTIRSFTFSPEAFAAQVKV 191

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
                  + +         +               D   K      E+            
Sbjct: 192 DDAALQKYYEAHKKDYLIPQAVKLEYVALNI---KDLADKQNVSAEEVQKAYDSKSVDLS 248

Query: 176 REYLIRTVLFSIPDNKLQ--NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS-IG 232
               I  +   +  N  +  N     +  K A E +           K++  +   +  G
Sbjct: 249 PRAEIAHIFIPVMPNGDEASNAEIKAEVDKMAAELKAHPDAFAELAAKYSKDLSSSNKGG 308

Query: 233 KAQYLLE----SDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
              YL +           +      +   ++   +  G   I + +          KA +
Sbjct: 309 NLGYLSKSGGSGFGPEFDKAAFALGKGEVSDTVKSSLGYHVIKVLNVEAEPTLEQAKARI 368

Query: 289 SAQNTPTKIEKHEAEYVKKL 308
            A     K         +KL
Sbjct: 369 EAALKLKKAASAFNAAKEKL 388


>gi|311109018|ref|YP_003981871.1| peptidyl-prolyl cis-trans isomerase C [Achromobacter xylosoxidans
           A8]
 gi|310763707|gb|ADP19156.1| peptidyl-prolyl cis-trans isomerase C [Achromobacter xylosoxidans
           A8]
 gi|317405706|gb|EFV86002.1| peptidyl-prolyl cis-trans isomerase C [Achromobacter xylosoxidans
           C54]
          Length = 93

 Score = 65.5 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 8/81 (9%), Positives = 25/81 (30%), Gaps = 1/81 (1%)

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NN 256
            + +  + + +           ++ +S       G         +  +F  ++  +    
Sbjct: 13  TEAKANELKTAIENGADFAQLAKENSSCPSSRDGGNLGTFGPGQMVKEFDTVVFSAPVGE 72

Query: 257 TTNPYVTQKGVEYIAICDKRD 277
              P  TQ G   + +  ++D
Sbjct: 73  VQGPVKTQFGYHLVEVTSRKD 93


>gi|294669050|ref|ZP_06734136.1| putative PPIC-type PPIASE domain protein [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309042|gb|EFE50285.1| putative PPIC-type PPIASE domain protein [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 291

 Score = 65.1 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/297 (13%), Positives = 89/297 (29%), Gaps = 23/297 (7%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVET 84
           F    I++  S ++ +    T+NG  I  G+I ++I L++              +L+  T
Sbjct: 6   FLPALIMALFSGSLMAETLLTVNGNKIDSGEIDRQIKLIRQDNPQIPDSPELRNQLLSNT 65

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
           + +  + +            F          + E  +          + ++  L IQ+  
Sbjct: 66  VTRMLVNQEARRLKLEQGQEFKTASENARKSAKEQGADKHADFKQQWDDYQAALLIQAFV 125

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
             ++K        + E+    ++ +       E  +  +L     +  Q    ++ +   
Sbjct: 126 SHIIK---TNPISDQEIRRAYDESRKYYQGSSEVQLGEILTPNKADAEQAIKDLKAK--- 179

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVSIGKAQ------YLLESDLHPQFQNLLKKSQNNT- 257
                       +   K+++       G           LE  + P +  +    +    
Sbjct: 180 --------KPFTDTARKYSADPAVKQTGGINPEFDALKDLEQSVPPIYAAVKDLKKGQFT 231

Query: 258 TNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           + P V         I DKR L         +      +  ++  +  V  L   A I
Sbjct: 232 STPVVGNGVFGIFYIHDKRPLQL--PPFEQVQNNIRRSLQQQKISRAVDALYQKATI 286


>gi|213423790|ref|ZP_03356770.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 119

 Score = 65.1 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 11/114 (9%), Positives = 34/114 (29%), Gaps = 7/114 (6%)

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQK 265
           E              +++    +  G+  +    +L   F        + +   P  +  
Sbjct: 4   EEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGV 63

Query: 266 GVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           G   + + D R     +        ++  + +P   ++     ++++   A I 
Sbjct: 64  GFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMNDQQARLKLEEI--AADIK 115


>gi|168049559|ref|XP_001777230.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671458|gb|EDQ58010.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 144

 Score = 65.1 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 28/103 (27%), Gaps = 2/103 (1%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
                R +L        +    +++   D+ +      +      +++        G   
Sbjct: 43  TYVKARHILCEKQGKINEAYKKLKEGWLDSGDKVP-PAEFAKLAAEYSECPSGKKGGDLG 101

Query: 236 YLLESDLH-PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
           +     +  P  +          + P+ +  G   I    +++
Sbjct: 102 WFPRGKMAGPFQEVAFNTPPGVLSAPFKSTHGYHIILAEGRKN 144


>gi|322418770|ref|YP_004197993.1| Dcu family anaerobic c4-dicarboxylate antiporter [Geobacter sp.
           M18]
 gi|320125157|gb|ADW12717.1| anaerobic c4-dicarboxylate antiporter, Dcu family [Geobacter sp.
           M18]
          Length = 546

 Score = 65.1 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 9/86 (10%), Positives = 24/86 (27%), Gaps = 2/86 (2%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL--LKKSQNN 256
           +   K             +   + +      + G   +  +  + P+F+      K   +
Sbjct: 282 ETEAKQVLAQLKSGGSFSDVARQCSIDATAGTGGDLGWQAKGKMLPEFEKACAKLKKPGD 341

Query: 257 TTNPYVTQKGVEYIAICDKRDLGGEI 282
            T    +  G   +   +KR    + 
Sbjct: 342 LTEVIKSPFGYHVVKFDEKRPAQNKE 367


>gi|313675957|ref|YP_004053953.1| ppic-type peptidyl-prolyl cis-trans isomerase [Marivirga tractuosa
           DSM 4126]
 gi|312942655|gb|ADR21845.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marivirga tractuosa
           DSM 4126]
          Length = 713

 Score = 65.1 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 47/135 (34%), Gaps = 4/135 (2%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYLLE 239
             +    P    ++    +K +K   E             K +  +    + G   +   
Sbjct: 240 HIMKRFPPQASSEDSLQTEKELKKIYEQLNSGENWFILATKESEDLSTKDNGGSLPWFGA 299

Query: 240 SDLHPQFQNLLKK--SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
             L    + +  +   + + + P  +  G   + + DKR +G   +++  LS +    + 
Sbjct: 300 GRLPASLETVAFELEEKGDISKPVESPYGWHILKLEDKRGVGSLESMEESLSRRVQRDQR 359

Query: 298 EKHEA-EYVKKLRSN 311
            + +  E +KKL+  
Sbjct: 360 SELKEVEVIKKLKEE 374


>gi|301631501|ref|XP_002944836.1| PREDICTED: probable parvulin-type peptidyl-prolyl cis-trans
           isomerase-like [Xenopus (Silurana) tropicalis]
          Length = 262

 Score = 65.1 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/305 (13%), Positives = 95/305 (31%), Gaps = 48/305 (15%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVIT--DGDISKRIALLKLQKINGELE 73
           +    +  +       +      +      +NG+ +     ++ K+      + I  E+E
Sbjct: 1   MKQKLLSGLVATAVWGAVALPVAAQN-LAIVNGKPVPKERAELLKQQVERSGRPITPEIE 59

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
               +E+I   +  QE +K G+    +  N                              
Sbjct: 60  GQIKEEVIAREIFLQEAKKRGLEASKDFKNQ----------------------------- 90

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
               LA Q+I    +  D+  K    + EI A   K       +    + +    +++ +
Sbjct: 91  --MELARQTILIRELFADYQKKNPVSDAEIQAEYDKFVASNSGKEYKVSHILVEKEDEAK 148

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLK 251
           +     K+            K  +  +K +         G   +   +    +F + +LK
Sbjct: 149 SIIASIKQ---------GSAKFEDIAKKQSKDPGSGARGGDLDWANPNSYVSEFTEAMLK 199

Query: 252 KSQNNTT-NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
             +   T  P  +Q G   I + D+R        +  +  Q T    ++   ++ + LR+
Sbjct: 200 LKKGEMTAEPVKSQFGWHVIRLDDERQAQL--PKQEEVKPQITQQLQQQKLGQFQENLRT 257

Query: 311 NAIIH 315
            A + 
Sbjct: 258 KAKVE 262


>gi|13488227|ref|NP_085712.1| hypothetical protein mlr9159 [Mesorhizobium loti MAFF303099]
 gi|14027961|dbj|BAB54553.1| mlr9159 [Mesorhizobium loti MAFF303099]
          Length = 360

 Score = 65.1 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/309 (8%), Positives = 69/309 (22%), Gaps = 30/309 (9%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
           F ++     + +    VP+ +  S      I  +I  E  T     + +     Q     
Sbjct: 3   FKRVYAAALLSLPLTTVPLTALSS--DDDPIVLSIGHERWTASQFQRLMLDTPPQVKEEA 60

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
             +              ++                 +H        +  +   +      
Sbjct: 61  AAE-------------PDVFAKRYADMHLLAQLAESRHLDQDADIRQRLAWVREGVMANA 107

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                Y   Q    +V +          +  +           V  Y       ++    
Sbjct: 108 AKNDLYQRTQVGNEEVRR--------YYDEHVSDFVDYTLQHLVIGYHGAESARNVGRKD 159

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL-LESDLHPQFQNLL 250
           +       +  +  ++                        G        + L    Q + 
Sbjct: 160 MAEDDARAEAEQLRKQLLEGENFAELVQCYSYDDDSKSDGGLLPETASRNLLPEIAQGIA 219

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE-----AEYV 305
              +N  ++P  T  G   + +  KR        + ++        +++          +
Sbjct: 220 DLKENEISHPIKTLYGYHLVRVI-KRSDNSFEDARRHIVNLLKSQIVDQQIDAIIWRRRL 278

Query: 306 KKLRSNAII 314
             + + A I
Sbjct: 279 SDVFAAAHI 287


>gi|167836273|ref|ZP_02463156.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia
           thailandensis MSMB43]
          Length = 644

 Score = 65.1 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/273 (7%), Positives = 63/273 (23%), Gaps = 22/273 (8%)

Query: 53  DGDISKRIALLKLQ-KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
             D  +   +L +Q     + ++     L ++ +    +  +              +  R
Sbjct: 133 SFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVASAFTPKSIARRLTELAEQQR 192

Query: 112 NTGLSAEDFSSFLDKQ---------GIGDNHFKQYLAIQSIWPDVV--KNDFMLKYGNLE 160
                    + +  K              +         +    +V  +   +      +
Sbjct: 193 EVQPMVLKPADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLVYSQAAAVAAAQPSD 252

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
           ++I             +  +R     I   K  +          AE+    +    ++  
Sbjct: 253 IDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAADKAAAKAKAEQLLAEVKAHPDQFA 312

Query: 221 KFA-----SKIHDVSIGKAQYLLESDLHPQFQNLLKK---SQNNTTNPYVTQKGVEYIAI 272
           + A             G   ++                   ++  +       G   +  
Sbjct: 313 QIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKDEVSGVVQGDFGFHILKA 372

Query: 273 CDKRDLGGE--IALKAYLSAQNTPTKIEKHEAE 303
            D +    +    +K  ++A        K  A+
Sbjct: 373 TDVKPAVVKPLAEVKDSIAADLKQQFAAKAFAD 405



 Score = 52.8 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/236 (8%), Positives = 65/236 (27%), Gaps = 18/236 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIF---CIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
           +     +  +L+  + +LI+     IV I  ++ +   +     +NG  IT  +    + 
Sbjct: 1   MLDFFRNHQRLMMFFLLLIVLPGLGIVGIQGFRGFFDENANVAAVNGHKITRAEFDGMLR 60

Query: 62  LLKLQKIN-------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF-- 106
               Q                 E  +  +  LI +     E ++  +T     V      
Sbjct: 61  QQVDQARQMLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLTASDGAVRQTLLS 120

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
                +       F +    Q +           + +  ++                 + 
Sbjct: 121 DPVIASLKKPDGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVASAFTPKSI 180

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            +++  +  ++  ++ ++    D   + Q    +     +  +           ++
Sbjct: 181 ARRLTELAEQQREVQPMVLKPADYAAKVQPTDAQISAYYDAHKQAFATRETATIQY 236


>gi|270156946|ref|ZP_06185603.1| peptidyl prolyl cis-trans isomerase D-like protein [Legionella
           longbeachae D-4968]
 gi|289164629|ref|YP_003454767.1| peptidyl-prolyl cis-trans isomerase D [Legionella longbeachae
           NSW150]
 gi|269988971|gb|EEZ95225.1| peptidyl prolyl cis-trans isomerase D-like protein [Legionella
           longbeachae D-4968]
 gi|288857802|emb|CBJ11647.1| putative peptidyl-prolyl cis-trans isomerase D [Legionella
           longbeachae NSW150]
          Length = 624

 Score = 65.1 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/267 (11%), Positives = 76/267 (28%), Gaps = 18/267 (6%)

Query: 52  TDGDISKRIALLKLQKINGELE---KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
           T       +    L             A+ + I   +      +              V 
Sbjct: 141 TQSSFQNEVKQGMLLNQQRFAFMGSSFALPDEIDRFVSLYMQSRDYEYL--------IVP 192

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
            +R          +  D        F     +   + ++  +D   K    + ++    +
Sbjct: 193 VSRFEKDVQISQDAITDYYNKHKREFMAPEKVSLDYVNLSMHDIKDKVNVSDDDVKRYYE 252

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
           + +N  +               +  N+  ++K    A  + L L KD  + +   SK+ D
Sbjct: 253 ENQNNYLTPARWHVAHILFAVPQGANKDELEKIQNKANSTYLLLQKDPKQFDHLVSKMSD 312

Query: 229 VSI-----GKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE-- 281
             +     G   ++               +    ++P  T+ G E   + D + +  +  
Sbjct: 313 DKLSVADNGVLPWIAAGQNEYSKLLSHLTTPGQISSPEKTKHGYEIFKLIDYKPVSTKPL 372

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKKL 308
             ++A +  Q      +    + +++L
Sbjct: 373 SEVEASIKEQLVVEMAQTQYTQAMEQL 399



 Score = 59.3 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/321 (9%), Positives = 78/321 (24%), Gaps = 24/321 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+   +   +  L    + I F +  +  Y     ++  +  +N   +T        
Sbjct: 1   MLQKLNERIQGVVAWLVVILIGITFTLFGVDYYLQSRQTTNAKVVVNDFPLTLQAFDTSY 60

Query: 61  ALLKLQKI--------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
              +  +           +L+   + ++I   +  Q   K+G    ++  N   +   + 
Sbjct: 61  RRARAMQDLSQLTAADEKKLQNQVLDQMINNEVLVQAARKNGFNVSADQANAAILSIPQF 120

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
                     +             +         + +  F     +  +    ++     
Sbjct: 121 QEDGHFSAQKYQQALNAALFTQSSFQNEVKQGMLLNQQRFAFMGSSFALPDEIDRFVSLY 180

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
           +  R+Y     L        ++    Q  I D      R      K+      +    I 
Sbjct: 181 MQSRDYEY---LIVPVSRFEKDVQISQDAITDYYNKHKREFMAPEKVSLDYVNLSMHDIK 237

Query: 233 KAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ- 291
               + + D+   ++               T        I      G        +  + 
Sbjct: 238 DKVNVSDDDVKRYYEENQNNYL--------TPARWHVAHILFAVPQGANKDELEKIQNKA 289

Query: 292 ----NTPTKIEKHEAEYVKKL 308
                   K  K     V K+
Sbjct: 290 NSTYLLLQKDPKQFDHLVSKM 310


>gi|228911670|ref|ZP_04075447.1| Foldase protein prsA 2 [Bacillus thuringiensis IBL 200]
 gi|228847994|gb|EEM92871.1| Foldase protein prsA 2 [Bacillus thuringiensis IBL 200]
          Length = 275

 Score = 65.1 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/297 (9%), Positives = 82/297 (27%), Gaps = 48/297 (16%)

Query: 27  IVPIVSYKSWAMSSRIRT-TINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETL 85
           +  ++   +   +  + T  +    IT  D++K +          +  K  +  +++E L
Sbjct: 1   MSGLLLLSACGNTENVATSKVGN--ITQNDLNKELK--------NKYGKEVLSSMMIEQL 50

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
              +         ++       ++ +  G + +   S L  Q   +     +        
Sbjct: 51  LLNK-----YKVSNDEAQKKVDEYKKQMGENFKSTLSQLRFQNEDE-----FKEKMIKPQ 100

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
             ++          E++         +                          +K+ ++ 
Sbjct: 101 IALEKAIKASITEKELKDYYKPTLKVSHI--------------------LVKDEKKAQEI 140

Query: 206 EESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHP----QFQNLLKKSQNNTTNP 260
           ++         +  ++ +         G    L    + P      +   K      + P
Sbjct: 141 KDKLNNGGDFASLAKEHSEDPGSKEQGGDLGELDAVKMEPMDSKFKEATYKLEVGQISEP 200

Query: 261 YVTQKGVEYIAICDKRDLGGEIALKAYLSAQN--TPTKIEKHEAEYVKKLRSNAIIH 315
             +  G   I + DK++L      K  +  +      K  + + + +K L     + 
Sbjct: 201 VKSSFGYHIIKVTDKKELKPFDQEKDNIQKELETMRAKNPQWQQKLIKDLIKKENVQ 257


>gi|320106396|ref|YP_004181986.1| SurA domain-containing protein [Terriglobus saanensis SP1PR4]
 gi|319924917|gb|ADV81992.1| SurA domain protein [Terriglobus saanensis SP1PR4]
          Length = 240

 Score = 65.1 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 54/172 (31%), Gaps = 19/172 (11%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSS-------RIRTTINGEVITDGDISKRIALLKLQ- 66
            +    +L+ F    + +      +        RI   +NG++I   D+ + +   KLQ 
Sbjct: 8   RVFAVALLLCFICRSMPAQTPAKPADPRGESVDRIIAIVNGQIILQSDLDEEVRFAKLQP 67

Query: 67  ---KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF--------FVQHARNTGL 115
                   L + A+  LI  TL  Q+ +  G    ++                 A     
Sbjct: 68  YRLGAGKTLREQAMSRLIDRTLILQQQQGMGQAPITDAELDAAITDLRKDLPACAHAACE 127

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
           + E +  FL   G      ++   I+      ++  F       + +I    
Sbjct: 128 TDEGWIKFLAGVGFTPEEVRERWRIRLEVLRFIEQRFRAGIRISDAQIEEFY 179


>gi|260061697|ref|YP_003194777.1| peptidylprolyl cis-trans isomerase [Robiginitalea biformata
           HTCC2501]
 gi|88785829|gb|EAR16998.1| peptidylprolyl cis-trans isomerase [Robiginitalea biformata
           HTCC2501]
          Length = 706

 Score = 65.1 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/268 (12%), Positives = 64/268 (23%), Gaps = 12/268 (4%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQ 88
            I           I   I        +  +  A         E    A +  I E+L+  
Sbjct: 207 SIPDSTISVSKEEIAAYIKENP---SEFKQEAARDLRYVYFEEKASAADETAIEESLRAL 263

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
             ++     D ++          NT           D +       K  L  Q     + 
Sbjct: 264 LEDEEEYREDLDST--VVNPGFLNTDDMLAFLDRNSDTKYDTIYRAKSELPTQWADTLMA 321

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ-------GFVQKR 201
                      +       + M            +L S    +  N           ++ 
Sbjct: 322 LETGETFGPYRDGNAFKVSRMMDRKENGSVKASHILISYAGAERANPSVTRTQEEARERA 381

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPY 261
            +   E+R    +        +      + G   Y  E  +   F +    +   T    
Sbjct: 382 EELLAEARRSGAQFAQLARDNSDGPSAPNGGDLGYFQEGVMTDAFNDFAFGNAVGTVGLV 441

Query: 262 VTQKGVEYIAICDKRDLGGEIALKAYLS 289
            T+ G   + + DKRD+     L   + 
Sbjct: 442 ETEFGYHVVKVDDKRDVVRLATLTRAIE 469



 Score = 50.1 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/171 (8%), Positives = 42/171 (24%), Gaps = 1/171 (0%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           +   +    +  I ++       +   V                 +NGE I+  D   R+
Sbjct: 3   ILENIRKRTTVLILIIGMALFAFVVSDVLTRGGFGSDKIGSAVGEVNGEPISIDDFRARM 62

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
              +            V  +  +T++   + +       +      +        +    
Sbjct: 63  EAAEGSFGPQATSTQIVNSIWDQTVRTAILGQEFEKLGIDIQQDQIMDLI-RNNPNFTQN 121

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
             F D  G  D    +    +       +    L+  +  ++    +    
Sbjct: 122 PQFQDANGNFDEDAFRNFITELRVNQPQQYQMWLQTEDALIQAAKEQTYFD 172


>gi|207725035|ref|YP_002255432.1| ppic-type peptidyl-prolyl cis-trans isomerase protein [Ralstonia
           solanacearum MolK2]
 gi|206590265|emb|CAQ37226.1| ppic-type peptidyl-prolyl cis-trans isomerase protein [Ralstonia
           solanacearum MolK2]
          Length = 278

 Score = 65.1 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 79/293 (26%), Gaps = 54/293 (18%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSG 94
           + A+   +   +NG  +T   + + IA    Q    ++ +   Q+LI   L +Q+  K+ 
Sbjct: 25  ADALPPGVIALVNGTQVTQAQLDRAIAQSGAQANP-QIAQALKQQLIARELFRQQAAKNP 83

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
                  V                                 Q      I    +K++   
Sbjct: 84  AYEKLPAVKQAM-----------------------------QEAHDAVITQAWLKDNIKP 114

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
                E         + ++  +EY  R +         Q    +++              
Sbjct: 115 APITDEQVKARYDAIVASLGDKEYKARVIQLGDDVTAAQVLALLKQ-----------GGD 163

Query: 215 DCNKLEKFASKIHDVSIGKAQYL---------LESDLHPQFQNLLKKSQNNT--TNPYVT 263
                +++++  + V  G   ++            +L       +         T P   
Sbjct: 164 FAKLAQQYSTAPNKVRGGDMDWVSFKVPAEEGKTQNLPLPLAREIAALGIGATSTAPVEV 223

Query: 264 QKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                 + +   R   +     +KA +       ++E+   + V  L   A +
Sbjct: 224 GSQRYIVKVEAARPTQVPAYDTVKAAIRQALESAELERVTVQVVGGLLKQAKV 276


>gi|114776872|ref|ZP_01451915.1| Parvulin-like peptidyl-prolyl isomerase [Mariprofundus ferrooxydans
           PV-1]
 gi|114552958|gb|EAU55389.1| Parvulin-like peptidyl-prolyl isomerase [Mariprofundus ferrooxydans
           PV-1]
          Length = 92

 Score = 65.1 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 8/80 (10%), Positives = 23/80 (28%), Gaps = 1/80 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             + + +  +             ++ +S     + G         + P+F + +      
Sbjct: 12  DTEAQCEALKAEIEGGADFAEVAKEHSSCPSGRNGGDLGEFGPGMMVPEFDKVVFSAEVG 71

Query: 256 NTTNPYVTQKGVEYIAICDK 275
               P  TQ G   + +  +
Sbjct: 72  TVQGPVKTQFGYHLLEVTSR 91


>gi|325523302|gb|EGD01656.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           TJI49]
          Length = 295

 Score = 65.1 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/335 (7%), Positives = 70/335 (20%), Gaps = 69/335 (20%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSR------------IRTTINGEVITDGDI 56
           +     ++    +     +         A +                  +NG  IT   +
Sbjct: 1   MFRLNNIIRAGCIAAFLSVATSSMLTPIAHADPAPVTAEEKLPAGTVAVVNGVAITQSAL 60

Query: 57  SKRIALLKLQK---INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
              +  +  +       +L     ++LI   + +Q   K         +           
Sbjct: 61  DDAVKSVAARTGRPDTPQLRDAIKRQLIAREVLRQNAMKVHFNDMPAVLQAA-------- 112

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
                                        +    ++ +        E       + + ++
Sbjct: 113 ----------------------TAAKESVMIAAYLEANVHPAAITDEQVRARYDELVASL 150

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGK 233
             +EY  R +      +  +    ++                    ++++      + G 
Sbjct: 151 GKKEYKPRVIATKDAADAWKALAALK-----------HGQSFDAVAQQYSVIPSKTAGGA 199

Query: 234 AQYLLESDLHPQ----------FQNLLKKSQNNTTN-PYVTQKGVEYIAICDKRDLG--G 280
             ++       +           Q + +      T  P +       + +   R      
Sbjct: 200 MPWVSFKLPVAEGHTQGLPFRLAQAISRLKPGGVTPQPVLADNMHLIVKLDAVRPTKALS 259

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
               K  L       +       +V      A I 
Sbjct: 260 FDEAKEALRKTLQVGEQRAASTRFVASQVQAATIQ 294


>gi|52783929|ref|YP_089758.1| YacD [Bacillus licheniformis ATCC 14580]
 gi|163119182|ref|YP_077358.2| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus
           licheniformis ATCC 14580]
 gi|319648596|ref|ZP_08002810.1| YacD protein [Bacillus sp. BT1B_CT2]
 gi|52346431|gb|AAU39065.1| YacD [Bacillus licheniformis ATCC 14580]
 gi|145902685|gb|AAU21720.2| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus
           licheniformis ATCC 14580]
 gi|317389363|gb|EFV70176.1| YacD protein [Bacillus sp. BT1B_CT2]
          Length = 296

 Score = 65.1 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/304 (11%), Positives = 90/304 (29%), Gaps = 37/304 (12%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
            ++I  ++      S + +  +   I    IT  +    +             K  ++++
Sbjct: 18  CIVIAYVLTKAQTASSSSAQEVIAHIGKNGITREEWLSEM--------EERYGKSTLEDM 69

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I + +  Q  EK+ I    + +   F+          ED +             ++    
Sbjct: 70  INDRVVTQMAEKNKIKVSDDDIEREFLLIKAVYNSFYEDEN-----------TTEKEWKE 118

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           Q     +++          + E+ +   K K++   +   R     + D     Q   + 
Sbjct: 119 QIKHNILLEELLTKDIVISDSELKSFYNKNKDLYKFDDSYRLKHIVVKDKDEAEQVLKEL 178

Query: 201 RIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLL---ESDLHPQFQNLLKKSQNN 256
           +                   + ++        G   ++    E+      +   +  +N 
Sbjct: 179 K---------EGSSFEAAAAEHSTDRYTAPYGGDLGFVNDQHENVPAEYLEKAEQLKENQ 229

Query: 257 TT-NPYVTQKGVEYIAICDKRDLGGEI--ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
               P  T +G   I + +K          +K  +  Q    ++    +  VK L  +A 
Sbjct: 230 WVDEPIKTSQGYAIIQLKEKLPGQAFTYSEVKNQIRRQIAMDQLGDKAS--VKTLWKDAK 287

Query: 314 IHYY 317
           + ++
Sbjct: 288 LSWF 291


>gi|163858778|ref|YP_001633076.1| peptidyl-prolyl cis-trans isomerase C [Bordetella petrii DSM 12804]
 gi|163262506|emb|CAP44809.1| peptidyl-prolyl cis-trans isomerase C [Bordetella petrii]
          Length = 93

 Score = 65.1 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 9/81 (11%), Positives = 25/81 (30%), Gaps = 1/81 (1%)

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NN 256
            + +  + + +            + +S       G         +  +F  ++  +    
Sbjct: 13  TEAKCNELKAAIEGGADFAQVARENSSCPSARDGGNLGTFGPGQMVKEFDTVVFSAPVGV 72

Query: 257 TTNPYVTQKGVEYIAICDKRD 277
              P  TQ G   + + D++D
Sbjct: 73  VQGPVKTQFGYHLVEVTDRQD 93


>gi|297521498|ref|ZP_06939884.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           OP50]
          Length = 152

 Score = 65.1 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 11/106 (10%), Positives = 37/106 (34%), Gaps = 3/106 (2%)

Query: 210 LRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVE 268
            +        ++ ++ I    + G   +L ++ +  + +N   K +   +    +  G  
Sbjct: 1   NKGGDFAALAKEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFL 60

Query: 269 YIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
            + + D +    +    ++  ++A+    K         +K+   A
Sbjct: 61  IVRLDDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAA 106


>gi|110636617|ref|YP_676824.1| peptidyl-prolyl cis-trans isomerase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110279298|gb|ABG57484.1| possible peptidyl-prolyl cis-trans isomerase [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 773

 Score = 65.1 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 52/170 (30%), Gaps = 5/170 (2%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                              +    + ++   +         ++    + +I    +    
Sbjct: 222 VSKPVRTKFGYHILKVVDRRPSQGQIHVAHIMARYSQGMSAEDSILAKNKIDQIYKELQA 281

Query: 212 LPKDCNKLEKFASKIHDVS-IGKAQYLLESDLHPQFQNLLKK--SQNNTTNPYVTQKGVE 268
                    +F+  ++  S  G+ Q+     + P F+N      +    T P  T  G  
Sbjct: 282 GTSWNELCGEFSDDVNSRSKNGELQWFSTGKMIPSFENAAFTLTTPGQYTTPVQTPYGWH 341

Query: 269 YIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYV-KKL-RSNAIIHY 316
            I + +++ LG    L+  + A+ T         + +  +L R N  + Y
Sbjct: 342 IIKLLERKPLGSFEELEPSIRAKVTKDSRSDLNKKMLIARLKRENNFVEY 391



 Score = 60.8 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 49/147 (33%), Gaps = 6/147 (4%)

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
            + +         ++F  P+   ++      +I    E  L+         +++      
Sbjct: 133 YERMKEEIRASHILIFCNPEATPKDTLIAYNKIVALRERALKGENFDQLAAQYSEDPSAK 192

Query: 230 -SIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY 287
            + G   Y     +  +F+         + + P  T+ G   + + D+R   G+I + A+
Sbjct: 193 TNKGDLGYFTALSMVYEFEEAAYNTKVGSVSKPVRTKFGYHILKVVDRRPSQGQIHV-AH 251

Query: 288 LSAQNTPTKIEK---HEAEYVKKLRSN 311
           + A+ +     +        + ++   
Sbjct: 252 IMARYSQGMSAEDSILAKNKIDQIYKE 278


>gi|261417353|ref|YP_003251036.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261373809|gb|ACX76554.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302327407|gb|ADL26608.1| PPIC-type PPIASE domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 335

 Score = 65.1 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/318 (13%), Positives = 84/318 (26%), Gaps = 17/318 (5%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--- 71
            L +     +     I S +     S     +    I+ G I     +L  Q+  G+   
Sbjct: 4   KLISRGAAAVLLTAGIASAQLMNSKSLDVIRVEKTGISAGKIDSLATMLGQQQAPGQKLT 63

Query: 72  ------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
                 L    V  L+ + L K E +K GI      V+       +              
Sbjct: 64  DEMMTQLRYAVVDNLVGQELIKLEAKKMGIKVAPAKVDSLTNLFKKQFPSEDAFQKELKK 123

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
                   FK+ +  Q     +++          E ++ A  Q  K+       I     
Sbjct: 124 SN-TTMKQFKEKIEDQLKSEQILEKKVPYPSAPTEKDLEAFWQLNKSKVAINDTISGARI 182

Query: 186 SIPDNKLQNQGFVQKRIKDA---EESRLRLPKDCNKLEKFASKIHDVSIGKA--QYLLES 240
            I       Q     +        + R +          ++        G    +++ +S
Sbjct: 183 FISTKGKNAQEISDAKDMLKGLAAQVRSKKATFAQLAAMYSDDKEAKKTGGIMNKFVAKS 242

Query: 241 DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK--AYLSAQNTPTKIE 298
                 + + K    + +       GV    + +K D   E       Y+       + +
Sbjct: 243 KSAAFAKAVGKIKVGDISEVITENDGVSIFMLTEKNDGKFESYKHQIDYILRVQAEQERQ 302

Query: 299 KHEAEYVKKLRSNAIIHY 316
                Y+  L     + Y
Sbjct: 303 AKLKAYLDDLGKTYKVQY 320


>gi|83647099|ref|YP_435534.1| parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC
           2396]
 gi|83635142|gb|ABC31109.1| Parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC
           2396]
          Length = 93

 Score = 65.1 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 24/80 (30%), Gaps = 1/80 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           + +  D ++            ++ +      + G+        +  +F Q +        
Sbjct: 14  EDQCNDLKKQIEDGADFAALAKEHSQCPSGRNGGELGEFGPGQMVKEFDQVVFSAEVGTV 73

Query: 258 TNPYVTQKGVEYIAICDKRD 277
             P  TQ G   + +  + D
Sbjct: 74  QGPVKTQFGYHLLEVTKRTD 93


>gi|86133089|ref|ZP_01051671.1| peptidylprolyl isomerase [Polaribacter sp. MED152]
 gi|85819952|gb|EAQ41099.1| peptidylprolyl isomerase [Polaribacter sp. MED152]
          Length = 544

 Score = 64.7 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/173 (9%), Positives = 47/173 (27%), Gaps = 4/173 (2%)

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
              +  K   + M                   +  +              ++ I      
Sbjct: 202 NAAYTTKIDEVSMPFRTRFGYHILKVDGLRPSKGEVEVAHILITDKTAKGEEIINTVYNR 261

Query: 209 RLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQK 265
             +  +      K++         GK +      +   F  +      +   + P+ T+ 
Sbjct: 262 LEKDEQFKMLARKYSDDTGSKSKGGKLRRFGSGVMVQPFDEVAFSLTKEGEYSKPFRTRF 321

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNT-PTKIEKHEAEYVKKLRSNAIIHYY 317
           G   + +  K  +     +K  L+++     +++  E   V +L+    I  +
Sbjct: 322 GWHIVQLIKKHPVKSFEEMKKELTSKIRSSDRLQLSEKAVVNRLKKEYKIKEF 374



 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/291 (9%), Positives = 83/291 (28%), Gaps = 30/291 (10%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELI 81
           LI+   +   +        ++  TI  E I   +  +          N E +   +++ +
Sbjct: 4   LILLLFIVFTTASIAQKKDKVLITIGDEKIMVSEFKRVYEKNLDAIDNEEAKD--LEKNL 61

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
              +  +   K       +T++ +  +        A  +        +           +
Sbjct: 62  DLFINYKLKVKEAYDIKLDTLSSYVKEMKTYRNQLAAPYMQDSAYVSVLVKDAYFRTKNE 121

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
                ++     +      ++      K+++  ++                ++   V + 
Sbjct: 122 VKAKHILIRTPKVATPKDTLKAYQKIMKIRDRILK---------------GEDFEKVAEE 166

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNP 260
           + + E                A      + G   Y     +   F+N       +  + P
Sbjct: 167 VSEDE-----------SARADAKSGRVGNKGNLGYFSAFKMVYPFENAAYTTKIDEVSMP 215

Query: 261 YVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           + T+ G   + +   R   GE+ + A++   +   K E+       +L  +
Sbjct: 216 FRTRFGYHILKVDGLRPSKGEVEV-AHILITDKTAKGEEIINTVYNRLEKD 265


>gi|194337592|ref|YP_002019386.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194310069|gb|ACF44769.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 705

 Score = 64.7 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/95 (12%), Positives = 30/95 (31%), Gaps = 2/95 (2%)

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLES 240
            +L        ++   V +      +            +K+++     ++ G   +  + 
Sbjct: 352 HILLHFNPASREDVARVSQLSALIFKQLQAGTPFDALAKKYSADPVSALNGGDIGWFSKE 411

Query: 241 DLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICD 274
            + PQF   +      +   P  TQ G+  I +  
Sbjct: 412 RMVPQFAAAVFGARPGSVIGPVQTQFGLHIIKVTG 446



 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/351 (9%), Positives = 80/351 (22%), Gaps = 63/351 (17%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
            S +       +  L   F+ +I     +    +          +NG+VI      +   
Sbjct: 4   MSSLRDKTHIILYTLLAAFLALIVFEWGMDFTGNSGTKQNQAGEVNGKVIPYSQYEEIYK 63

Query: 62  LLKLQ------------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--- 106
            +               +   E ++ A   ++ +TL  Q+++K GIT     V       
Sbjct: 64  AVTENFRRSNPGAEVMPENELEFQEQAWNTVVEQTLLDQQLKKFGITVQDQEVVDALGSA 123

Query: 107 ---VQHARNTGLSAEDFSSFLD---------KQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
               Q  R    +    +             +        ++ +  +     +++     
Sbjct: 124 TNPPQVIRQNFTNPATGAVDRAKLESIRRDPRNKELWLQIEKIVRRELEVNKLLRALQTF 183

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
            +           ++    +               N    +  ++K   + +E   +   
Sbjct: 184 VHVTDRELDDIVNRQYSLFSASFIPFPLSFAGPDSNFPVKEEEIKKYYDEHKELLKQFYS 243

Query: 215 DCNKL--------------------------------EKFASKIHDVSIGKAQYLLESDL 242
                                                  +     D   G  +    +D 
Sbjct: 244 RKADFVFFPLIPSSKDSLAVRTELETIRAEFSASVNDSDYVKVQSDRPAGINKVYSRADF 303

Query: 243 HPQ----FQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS 289
            P     F N           P   +     I I         +A  +++ 
Sbjct: 304 SPAAGDVFFNSPNFKPGTIVGPIADRGEYRLIKIRQISASAPLVARASHIL 354



 Score = 42.0 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 5/91 (5%)

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-- 280
           A  I   +     Y ++  L      +        + P  T  G   + +  K    G  
Sbjct: 608 ADSIRWSNGAIPGYGVDRSLVE---GMSALVPGKLSAPLKTSDGAALVLLSSKTVPAGLN 664

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             A K+ ++ Q    K E+  AEY+  LR  
Sbjct: 665 RKAEKSAIAPQLLRAKQEQLFAEYIASLRKK 695


>gi|313667751|ref|YP_004048035.1| periplasmic hypothetical protein [Neisseria lactamica ST-640]
 gi|313005213|emb|CBN86646.1| putative periplasmic hypothetical protein [Neisseria lactamica
           020-06]
          Length = 288

 Score = 64.7 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/305 (10%), Positives = 80/305 (26%), Gaps = 25/305 (8%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK----INGE 71
           +    +  +  +    S  +         T+NG+ I    I  ++A  + +      + +
Sbjct: 1   MKAKILTSVALLACSGSLFAQT-----LATVNGQKIDSSVIDAQVAAFRAENSSAEDSPQ 55

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           L +  + + I  T+  QE+++  +   +   +      A       +             
Sbjct: 56  LRRALLNQEITHTVVAQEVKRLKLDRSAEFKDMLAKLRAEAEKSGDDK---------KPS 106

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                      +                E +  A    +         ++         +
Sbjct: 107 FKTVWQAVEYGLNGRAYALHIAKTQPVSEQDAKAAYDNISGFYKGTQEVQLGEILTDKEE 166

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
              +     + K   ++ L+     +  ++       V +       E  + P +Q +  
Sbjct: 167 NAKKAVADLKAKKGFDAVLKQYSLNDHTKQTGKPDGYVPLKDL----EQGVPPLYQAVKD 222

Query: 252 KSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
             +   T  P           + D+R++         +  Q T     +     V  L  
Sbjct: 223 LKKGEFTATPLKNGDFYGVYYVNDRREVKV--PSFDEMKEQLTGDLQAERIDRAVGALLD 280

Query: 311 NAIIH 315
            A I 
Sbjct: 281 KADIK 285


>gi|126452826|ref|YP_001066614.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 1106a]
 gi|242317337|ref|ZP_04816353.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 1106b]
 gi|126226468|gb|ABN90008.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 1106a]
 gi|242140576|gb|EES26978.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 1106b]
          Length = 644

 Score = 64.7 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/303 (7%), Positives = 68/303 (22%), Gaps = 29/303 (9%)

Query: 26  CIVPIVSYKSWAMSSRIRT---TINGEVITDGDISKRIALLKLQ-KINGELEKIAVQELI 81
                 + +   +S  +       +G      D  +   +L +Q     + ++     L 
Sbjct: 107 LSASDGAVRQTLLSDPVIASLKKADG----SFDAERYTQMLAMQGMTPDQYQERVRYNLA 162

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ---------GIGDN 132
           ++ +    +  +              +  R         + +  K              +
Sbjct: 163 LQQIPASIVSSAFTPKSVARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAH 222

Query: 133 HFKQYLAIQSIWPDVV--KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                    +    +V  +          +++I             +  +R     I   
Sbjct: 223 KQAFATRETATIQYLVYSQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAA 282

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-----SKIHDVSIGKAQYLLESDLHPQ 245
           K  +          AE+    +    ++  + A             G   ++        
Sbjct: 283 KDASAAEKAAAKAKAEQLLAEVKAHPDRFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGG 342

Query: 246 FQNLLKK---SQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKH 300
                      ++  +       G   +   D +    +    +K  ++         K 
Sbjct: 343 AAFDDAAFALKKDEISGVVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLRQQFAAKA 402

Query: 301 EAE 303
            A+
Sbjct: 403 FAD 405



 Score = 51.6 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/236 (8%), Positives = 67/236 (28%), Gaps = 18/236 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIF---CIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
           +     +  +L+  + +LI+     IV I  ++ +   S     +NG  IT  +    + 
Sbjct: 1   MLDFFRNHQRLMMFFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGTLR 60

Query: 62  LLKLQKIN-------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF-- 106
               Q                 E  +  +  LI +     E ++  ++     V      
Sbjct: 61  QQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTLLS 120

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
                +   +   F +    Q +           + +  ++          +      + 
Sbjct: 121 DPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKSV 180

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            +++  +  ++  ++ ++    D   + Q    +     +  +           ++
Sbjct: 181 ARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQY 236


>gi|53719046|ref|YP_108032.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei K96243]
 gi|76809896|ref|YP_333865.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           1710b]
 gi|254189176|ref|ZP_04895687.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254259824|ref|ZP_04950878.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           1710a]
 gi|52209460|emb|CAH35412.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei K96243]
 gi|76579349|gb|ABA48824.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           1710b]
 gi|157936855|gb|EDO92525.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254218513|gb|EET07897.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           1710a]
          Length = 644

 Score = 64.7 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/303 (7%), Positives = 68/303 (22%), Gaps = 29/303 (9%)

Query: 26  CIVPIVSYKSWAMSSRIRT---TINGEVITDGDISKRIALLKLQ-KINGELEKIAVQELI 81
                 + +   +S  +       +G      D  +   +L +Q     + ++     L 
Sbjct: 107 LSASDGAVRQTLLSDPVIASLKKADG----SFDAERYTQMLAMQGMTPDQYQERVRYNLA 162

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ---------GIGDN 132
           ++ +    +  +              +  R         + +  K              +
Sbjct: 163 LQQIPASIVSSAFTPKSVARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAH 222

Query: 133 HFKQYLAIQSIWPDVV--KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                    +    +V  +          +++I             +  +R     I   
Sbjct: 223 KQAFATRETATIQYLVYSQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAA 282

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-----SKIHDVSIGKAQYLLESDLHPQ 245
           K  +          AE+    +    ++  + A             G   ++        
Sbjct: 283 KDASAAEKAAARAKAEQLLAEVKAHPDRFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGG 342

Query: 246 FQNLLKK---SQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKH 300
                      ++  +       G   +   D +    +    +K  ++         K 
Sbjct: 343 AAFDDAAFALKKDEISGVVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLRQQFAAKA 402

Query: 301 EAE 303
            A+
Sbjct: 403 FAD 405



 Score = 51.6 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/236 (8%), Positives = 67/236 (28%), Gaps = 18/236 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIF---CIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
           +     +  +L+  + +LI+     IV I  ++ +   S     +NG  IT  +    + 
Sbjct: 1   MLDFFRNHQRLMMFFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGTLR 60

Query: 62  LLKLQKIN-------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF-- 106
               Q                 E  +  +  LI +     E ++  ++     V      
Sbjct: 61  QQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTLLS 120

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
                +   +   F +    Q +           + +  ++          +      + 
Sbjct: 121 DPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKSV 180

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            +++  +  ++  ++ ++    D   + Q    +     +  +           ++
Sbjct: 181 ARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQY 236


>gi|254492427|ref|ZP_05105599.1| PPIC-type PPIASE domain, putative [Methylophaga thiooxidans DMS010]
 gi|224462319|gb|EEF78596.1| PPIC-type PPIASE domain, putative [Methylophaga thiooxydans DMS010]
          Length = 93

 Score = 64.7 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 10/82 (12%), Positives = 27/82 (32%), Gaps = 1/82 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             ++   + +    +     +  ++ +S     S G         + P+F + +     N
Sbjct: 12  ESEEICLELKREIEQGADFADIAKEHSSCPSGRSGGDLGEFGPGMMVPEFDKVVFSAPVN 71

Query: 256 NTTNPYVTQKGVEYIAICDKRD 277
               P  TQ G   + +  + +
Sbjct: 72  TVQGPVQTQFGYHLLEVTSRSE 93


>gi|16803484|ref|NP_464969.1| hypothetical protein lmo1444 [Listeria monocytogenes EGD-e]
 gi|47095395|ref|ZP_00233005.1| protein export protein [Listeria monocytogenes str. 1/2a F6854]
 gi|224499704|ref|ZP_03668053.1| hypothetical protein LmonF1_08419 [Listeria monocytogenes Finland
           1988]
 gi|224501615|ref|ZP_03669922.1| hypothetical protein LmonFR_03702 [Listeria monocytogenes FSL
           R2-561]
 gi|254827732|ref|ZP_05232419.1| rotamase [Listeria monocytogenes FSL N3-165]
 gi|254829797|ref|ZP_05234452.1| hypothetical protein Lmon1_00510 [Listeria monocytogenes 10403S]
 gi|254898390|ref|ZP_05258314.1| hypothetical protein LmonJ_01205 [Listeria monocytogenes J0161]
 gi|254912118|ref|ZP_05262130.1| protein export protein [Listeria monocytogenes J2818]
 gi|254936446|ref|ZP_05268143.1| rotamase [Listeria monocytogenes F6900]
 gi|284801831|ref|YP_003413696.1| hypothetical protein LM5578_1586 [Listeria monocytogenes 08-5578]
 gi|284994973|ref|YP_003416741.1| hypothetical protein LM5923_1538 [Listeria monocytogenes 08-5923]
 gi|46396979|sp|Q8Y759|PRSA1_LISMO RecName: Full=Foldase protein prsA 1; Flags: Precursor
 gi|16410873|emb|CAC99522.1| lmo1444 [Listeria monocytogenes EGD-e]
 gi|47016216|gb|EAL07139.1| protein export protein [Listeria monocytogenes str. 1/2a F6854]
 gi|258600111|gb|EEW13436.1| rotamase [Listeria monocytogenes FSL N3-165]
 gi|258609038|gb|EEW21646.1| rotamase [Listeria monocytogenes F6900]
 gi|284057393|gb|ADB68334.1| hypothetical protein LM5578_1586 [Listeria monocytogenes 08-5578]
 gi|284060440|gb|ADB71379.1| hypothetical protein LM5923_1538 [Listeria monocytogenes 08-5923]
 gi|293590088|gb|EFF98422.1| protein export protein [Listeria monocytogenes J2818]
          Length = 294

 Score = 64.7 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/312 (9%), Positives = 88/312 (28%), Gaps = 47/312 (15%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           ++   K++ +     +  +    S              +   +T  ++ + +        
Sbjct: 1   MTKLKKVMISVIAATLLLLAGCGSSA--------VIKTDAGSVTQDELYEAMKT------ 46

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
                   VQ+L  + + + +   +    ++                  E +    +   
Sbjct: 47  --TYGNEVVQQLTFKKILEDKYTVTEKEVNAEY------------KKYEEQYGDSFESTL 92

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
             +N  K        +  +V+          E ++ A  +        +  +R +L    
Sbjct: 93  SSNNLTKTSFKENLEYNLLVQKATEANMDVSESKLKAYYKTW----EPDITVRHIL---- 144

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQ 247
                     +   K+ +       K  +  +++++      + G        ++   F+
Sbjct: 145 -------VDDEATAKEIQTKLKNGEKFTDLAKEYSTDTATSTNGGLLDPFGPGEMDETFE 197

Query: 248 NLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS-AQNTPTKIEKHEAEY 304
                 +++++ +    +  G   I +  K + G     KA +  A        ++    
Sbjct: 198 KAAYALENKDDVSGIVKSTYGYHLIQLVKKTEKGTYAKEKANVKAAYIKSQLTSENMTAA 257

Query: 305 VKKLRSNAIIHY 316
           +KK    A I  
Sbjct: 258 LKKELKAANIDI 269


>gi|315303180|ref|ZP_07873840.1| foldase protein PrsA [Listeria ivanovii FSL F6-596]
 gi|313628450|gb|EFR96923.1| foldase protein PrsA [Listeria ivanovii FSL F6-596]
          Length = 291

 Score = 64.7 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/310 (9%), Positives = 84/310 (27%), Gaps = 47/310 (15%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           ++   K++ ++    +  +    S              +   +T  D+ + +        
Sbjct: 1   MTKLKKVMISFITATLLILAGCGSSA--------VVKTDAGSVTQDDLYEAMKT------ 46

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
                   VQ+L  +   + +   +    ++                  E +    +   
Sbjct: 47  --TYGNEVVQQLTFKXXLEDKYTVTKKEVNAEY------------KKYEEQYGDSFESTL 92

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
              N  K        +  +V+          E ++    +        +  +R +L    
Sbjct: 93  ASSNLTKTSFKENIEYNLLVQKATEANMDVSESKLKKYYKTW----QPDITVRHIL---- 144

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQ 247
                     +   K+ +       K  +  +++++      + G        ++   F+
Sbjct: 145 -------VDDEDTAKEIQTKLKNGEKFTDLAKEYSTDTATSTNGGLLDPFGTGEMDEAFE 197

Query: 248 NLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA-QNTPTKIEKHEAEY 304
                 K+ ++ +    +  G   I +  K D       KA + A         ++    
Sbjct: 198 KAAYALKNPDDISGIVKSSYGYHLIQLVKKTDKTTYAKDKAAVKASYIESQLTSENMTAA 257

Query: 305 VKKLRSNAII 314
           +KK    A I
Sbjct: 258 LKKELKAANI 267


>gi|87122616|ref|ZP_01078493.1| peptidyl-prolyl cis-trans isomerase C [Marinomonas sp. MED121]
 gi|86162074|gb|EAQ63362.1| peptidyl-prolyl cis-trans isomerase C [Marinomonas sp. MED121]
          Length = 92

 Score = 64.7 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 9/78 (11%), Positives = 22/78 (28%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +   +  +    +        +K+++       G      + D+   F + +      
Sbjct: 12  KSKAECEKVKALLDKGGDFHQLAKKYSTCPSAKKGGDLGEFRKGDMVKAFDKAVFNGPLL 71

Query: 256 NTTNPYVTQKGVEYIAIC 273
               P  TQ G   I + 
Sbjct: 72  KVQGPIKTQFGFHLIKVL 89


>gi|307720301|ref|YP_003891441.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978394|gb|ADN08429.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurimonas
           autotrophica DSM 16294]
          Length = 92

 Score = 64.7 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 8/78 (10%), Positives = 23/78 (29%), Gaps = 1/78 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           +++  + +             +  +S     + G         + P+F + +        
Sbjct: 14  EEKCNELKTEIENGADFGEVAQANSSCPSSRNGGDLGQFGPGQMVPEFDKAVFSGDVGVV 73

Query: 258 TNPYVTQKGVEYIAICDK 275
             P  TQ G   + +  +
Sbjct: 74  YGPIQTQFGYHLLEVTGR 91


>gi|126439578|ref|YP_001059347.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           668]
 gi|126219071|gb|ABN82577.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           668]
          Length = 644

 Score = 64.7 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/303 (7%), Positives = 68/303 (22%), Gaps = 29/303 (9%)

Query: 26  CIVPIVSYKSWAMSSRIRT---TINGEVITDGDISKRIALLKLQ-KINGELEKIAVQELI 81
                 + +   +S  +       +G      D  +   +L +Q     + ++     L 
Sbjct: 107 LSASDGAVRQTLLSDPVIASLKKADG----SFDAERYTQMLAMQGMTPDQYQERVRYNLA 162

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ---------GIGDN 132
           ++ +    +  +              +  R         + +  K              +
Sbjct: 163 LQQIPASIVSSAFTPKSVARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAH 222

Query: 133 HFKQYLAIQSIWPDVV--KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                    +    +V  +          +++I             +  +R     I   
Sbjct: 223 KQAFATRETATIQYLVYSQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAA 282

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-----SKIHDVSIGKAQYLLESDLHPQ 245
           K  +          AE+    +    ++  + A             G   ++        
Sbjct: 283 KDASAAEKAAARAKAEQLLAEVKAHPDRFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGG 342

Query: 246 FQNLLKK---SQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKH 300
                      ++  +       G   +   D +    +    +K  ++         K 
Sbjct: 343 AAFDDAAFALKKDEISGVVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLRQQFAAKA 402

Query: 301 EAE 303
            A+
Sbjct: 403 FAD 405



 Score = 51.6 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/236 (8%), Positives = 67/236 (28%), Gaps = 18/236 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIF---CIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
           +     +  +L+  + +LI+     IV I  ++ +   S     +NG  IT  +    + 
Sbjct: 1   MLDFFRNHQRLMMFFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGTLR 60

Query: 62  LLKLQKIN-------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF-- 106
               Q                 E  +  +  LI +     E ++  ++     V      
Sbjct: 61  QQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTLLS 120

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
                +   +   F +    Q +           + +  ++          +      + 
Sbjct: 121 DPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKSV 180

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            +++  +  ++  ++ ++    D   + Q    +     +  +           ++
Sbjct: 181 ARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQY 236


>gi|121601506|ref|YP_993264.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           SAVP1]
 gi|124383444|ref|YP_001029291.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           NCTC 10229]
 gi|126449228|ref|YP_001080774.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           NCTC 10247]
 gi|167738127|ref|ZP_02410901.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia
           pseudomallei 14]
 gi|217421364|ref|ZP_03452868.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 576]
 gi|237812671|ref|YP_002897122.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           MSHR346]
 gi|251766653|ref|ZP_04819742.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           PRL-20]
 gi|254179433|ref|ZP_04886032.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           1655]
 gi|254198164|ref|ZP_04904586.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei S13]
 gi|254297318|ref|ZP_04964771.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           406e]
 gi|254358198|ref|ZP_04974471.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           2002721280]
 gi|121230316|gb|ABM52834.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           SAVP1]
 gi|124291464|gb|ABN00733.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           NCTC 10229]
 gi|126242098|gb|ABO05191.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           NCTC 10247]
 gi|148027325|gb|EDK85346.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           2002721280]
 gi|157806973|gb|EDO84143.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           406e]
 gi|169654905|gb|EDS87598.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei S13]
 gi|184209973|gb|EDU07016.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           1655]
 gi|217395106|gb|EEC35124.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 576]
 gi|237505475|gb|ACQ97793.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           MSHR346]
 gi|243065067|gb|EES47253.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           PRL-20]
          Length = 644

 Score = 64.7 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/303 (7%), Positives = 68/303 (22%), Gaps = 29/303 (9%)

Query: 26  CIVPIVSYKSWAMSSRIRT---TINGEVITDGDISKRIALLKLQ-KINGELEKIAVQELI 81
                 + +   +S  +       +G      D  +   +L +Q     + ++     L 
Sbjct: 107 LSASDGAVRQTLLSDPVIASLKKADG----SFDAERYTQMLAMQGMTPDQYQERVRYNLA 162

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ---------GIGDN 132
           ++ +    +  +              +  R         + +  K              +
Sbjct: 163 LQQIPASIVSSAFTPKSVARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAH 222

Query: 133 HFKQYLAIQSIWPDVV--KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                    +    +V  +          +++I             +  +R     I   
Sbjct: 223 KQAFATRETATIQYLVYSQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAA 282

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-----SKIHDVSIGKAQYLLESDLHPQ 245
           K  +          AE+    +    ++  + A             G   ++        
Sbjct: 283 KDASAAEKAAAKAKAEQLLAEVKAHPDRFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGG 342

Query: 246 FQNLLKK---SQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKH 300
                      ++  +       G   +   D +    +    +K  ++         K 
Sbjct: 343 AAFDDAAFALKKDEISGVVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLRQQFAAKA 402

Query: 301 EAE 303
            A+
Sbjct: 403 FAD 405



 Score = 51.6 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/236 (8%), Positives = 67/236 (28%), Gaps = 18/236 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIF---CIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
           +     +  +L+  + +LI+     IV I  ++ +   S     +NG  IT  +    + 
Sbjct: 1   MLDFFRNHQRLMMFFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGTLR 60

Query: 62  LLKLQKIN-------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF-- 106
               Q                 E  +  +  LI +     E ++  ++     V      
Sbjct: 61  QQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTLLS 120

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
                +   +   F +    Q +           + +  ++          +      + 
Sbjct: 121 DPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKSV 180

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            +++  +  ++  ++ ++    D   + Q    +     +  +           ++
Sbjct: 181 ARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQY 236


>gi|330970019|gb|EGH70085.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. aceris str. M302273PT]
          Length = 93

 Score = 64.7 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 25/80 (31%), Gaps = 1/80 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNT 257
           +++  + +             +  +S       G         +  +F  ++  +  N  
Sbjct: 14  EEKCNELKAQIEGGADFAEIAKANSSCPSSRQGGDLGSFGPGQMVKEFDTVVFSAPVNTV 73

Query: 258 TNPYVTQKGVEYIAICDKRD 277
             P  TQ G   + +  ++D
Sbjct: 74  QGPVKTQFGYHLLEVTSRQD 93


>gi|254785700|ref|YP_003073129.1| nitrogen fixation protein NifM [Teredinibacter turnerae T7901]
 gi|237686104|gb|ACR13368.1| nitrogen fixation protein NifM [Teredinibacter turnerae T7901]
          Length = 293

 Score = 64.7 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/158 (10%), Positives = 50/158 (31%), Gaps = 5/158 (3%)

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGF--VQKRIKDAEESRLRLP 213
               E+ +       K         R +L +I ++ ++N     ++K  +       +  
Sbjct: 119 VTETEISLYYYMNVAKFQMPEVRTARHILVTINEDNVENSRANSLKKINQIVSRLDKKPD 178

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAI 272
           +   +  K +     +  G    +    L+P+ +  L        +    +  G   +  
Sbjct: 179 RFAEQALKHSECPTSLQGGLMGKVKRGVLYPEIEQALFALKVGELSEVVESPLGFHIVLC 238

Query: 273 CDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
            + +  G      +   L       K ++ + ++++ +
Sbjct: 239 EEIQQEGTLPLQDVYPRLEEFLLNRKRKQRQRQWLESI 276


>gi|237800457|ref|ZP_04588918.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331023316|gb|EGI03373.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 93

 Score = 64.7 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 25/80 (31%), Gaps = 1/80 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNT 257
           +++  + +             +  +S       G         +  +F  ++  +  N  
Sbjct: 14  EEKCNELKAQIEGGADFAEIAKANSSCPSSRQGGDLGSFGPGQMVKEFDTVVFSAPVNTV 73

Query: 258 TNPYVTQKGVEYIAICDKRD 277
             P  TQ G   + +  ++D
Sbjct: 74  QGPVKTQFGYHLLEVTSRQD 93


>gi|66046132|ref|YP_235973.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. syringae B728a]
 gi|257484577|ref|ZP_05638618.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|289650297|ref|ZP_06481640.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|298486854|ref|ZP_07004910.1| Peptidyl-prolyl cis-trans isomerase ppiC [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|302189910|ref|ZP_07266583.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. syringae 642]
 gi|63256839|gb|AAY37935.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. syringae B728a]
 gi|298158721|gb|EFH99785.1| Peptidyl-prolyl cis-trans isomerase ppiC [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|330890128|gb|EGH22789.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. mori str. 301020]
 gi|330901187|gb|EGH32606.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. japonica str. M301072PT]
 gi|330944508|gb|EGH46494.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. pisi str. 1704B]
 gi|330950414|gb|EGH50674.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           Cit 7]
 gi|330980416|gb|EGH78519.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. aptata str. DSM 50252]
 gi|330988826|gb|EGH86929.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. lachrymans str. M301315]
 gi|331008138|gb|EGH88195.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 93

 Score = 64.7 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 25/80 (31%), Gaps = 1/80 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNT 257
           +++  + +             +  +S       G         +  +F  ++  +  N  
Sbjct: 14  EEKCNELKAQIEGGADFAEIAKANSSCPSSRQGGDLGSFGPGQMVKEFDTVVFSAPVNTV 73

Query: 258 TNPYVTQKGVEYIAICDKRD 277
             P  TQ G   + +  ++D
Sbjct: 74  QGPVKTQFGYHLLEVTSRQD 93


>gi|193214032|ref|YP_001995231.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroherpeton
           thalassium ATCC 35110]
 gi|193087509|gb|ACF12784.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroherpeton
           thalassium ATCC 35110]
          Length = 728

 Score = 64.7 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/150 (8%), Positives = 40/150 (26%), Gaps = 5/150 (3%)

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
                +  T        ++         +     ++ +       +     +  +K +  
Sbjct: 236 KIYDRRPKTQPIRASHIMVALPKSPTPSDTLKAYRKAESILRRIQKGEDFQSIAKKESDD 295

Query: 226 -IHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLGGEI 282
            +     G       + +   F+      K   + +    T  G   I +  + +     
Sbjct: 296 KLSGARGGDLGLFGLNRMVKPFETAAFALKQAGDLSPIIRTPFGYHIILLTGREEPKSYD 355

Query: 283 ALKAYLSAQNTP--TKIEKHEAEYVKKLRS 310
             K  L    +    K++     ++++L+ 
Sbjct: 356 ESKELLKRLLSRNSEKLKHERDLFIQQLKE 385



 Score = 55.5 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 49/184 (26%), Gaps = 11/184 (5%)

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
           D+      F+       L  +D       Q        +    Q   P +++   M K  
Sbjct: 70  DTFAAYQDFLDKYITFRLKVKDAQDRGFGQDPSLLQELKDYRAQLAEPYLMERAVMEKNL 129

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
               +    +    +I                    +     ++I +A +  L      +
Sbjct: 130 RDLYDKQQEEINASHILA---------LVSSAADPADTLRAYQKIMEARKLILAGAPFDS 180

Query: 218 KLEKFASKIH-DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK 275
               F+       + G   Y     +  QF++            P+ T+ G   + I D+
Sbjct: 181 VALAFSEDPSVRQNKGNLGYFSGGMMVYQFEDAAYGGKVGELVGPFRTRYGYHIVKIYDR 240

Query: 276 RDLG 279
           R   
Sbjct: 241 RPKT 244



 Score = 36.2 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 18/263 (6%), Positives = 66/263 (25%), Gaps = 4/263 (1%)

Query: 58  KRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
             I     Q ++  L+   +  L        ++ +                 ++     +
Sbjct: 455 DAIHQYAKQYVDETLKSYEIDHLEARYADFTQLMEDYRDGVLLFKVSDETVWSQAAATDS 514

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
              + +   +G      +  ++   +    + +D   +      +      +   I  R+
Sbjct: 515 AGRAYYATHKGDFRLGERMKVSEIVVSEKSLADDIYNELTQNIRQRDVVSAQDVKIQKRK 574

Query: 178 YLIRTVLFSIPDNKLQNQG-FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
              +        +K         +      +   +         +++     +   ++  
Sbjct: 575 IQAQLRKLKKRRDKKSQLKFQKLQEQLTGLQVDDQPRSFEALAARYSETADSLGSAESAI 634

Query: 237 LLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTP 294
               + + +   L  K       P    +    + +              +  + +    
Sbjct: 635 FNRGE-NRRVDKLFGKPVGFVAAPESINERYRIMRLDIMLPPTEKTYEEARTEIFSILQE 693

Query: 295 TKIEKHEAEYVKKLRSNAIIHYY 317
                 E E+V +LR+ + I  +
Sbjct: 694 QNTRALETEWVNRLRAKSKITVF 716


>gi|261496293|ref|ZP_05992697.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261308055|gb|EEY09354.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str.
           OVINE]
          Length = 623

 Score = 64.7 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/251 (5%), Positives = 54/251 (21%), Gaps = 13/251 (5%)

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH--ARNTGLSAEDFSSFLD 125
             G L+    + +I         +                +   A+              
Sbjct: 156 QEGMLQSQLQEGIINSDFNVPAQQALLAKLLLQQREVRLAEFSVAKEMENQTASEQELRA 215

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
                         +   +  +   D   K      +I     + K   V +        
Sbjct: 216 YYEANKTKLLAPEKLAVEYVTLSPKDVESKVEITNEQIQTYYDRNKADYVTKGEAHLAHI 275

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ 245
            +             +  +   +  +         K +  +   + G   +         
Sbjct: 276 QVASEAEAQAIEQALKNGEDFATLAKN--------KSSDTLSANNGGDLGWAKAGTFPKA 327

Query: 246 FQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEI--ALKAYLSAQNTPTKIEKHEA 302
           F++ +   +    +           I + +++         +K  ++       +    +
Sbjct: 328 FEDAVANLTAGQMSAAVKVDNAYHIIKVLERKPEQVIELAQVKDKIAQTIRQELVLTEYS 387

Query: 303 EYVKKLRSNAI 313
              +++ + A 
Sbjct: 388 TVAREMANKAF 398



 Score = 53.1 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 69/238 (28%), Gaps = 20/238 (8%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+    +  +      F L+    V                 +NGE I+    +  +
Sbjct: 1   MIEKMHERTNGPV--FKIIFALVSISFVIGGIGTGLISQDNSVAKVNGEEISQQLFNNTL 58

Query: 61  ALLKLQKI----------------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                    +  +  +  LI E L +Q  ++  +   ++ +  
Sbjct: 59  NREQNRLNVELGSRFWDLMDSPEYAAQFNQSVLNGLIDEELLRQYAKELKLGISADQIKS 118

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
             V               +       +     Y A   +   ++++       N +  +P
Sbjct: 119 EIVNSQMFQQDGKFSNELYQQTLRHNNLSADGYAA--IVQEGMLQSQLQEGIINSDFNVP 176

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           A +  +  + +++  +R   FS+           Q+     E ++ +L        ++
Sbjct: 177 AQQALLAKLLLQQREVRLAEFSVAKEMENQTASEQELRAYYEANKTKLLAPEKLAVEY 234


>gi|149375261|ref|ZP_01893032.1| peptidyl-prolyl cis-trans isomerase C2 [Marinobacter algicola
           DG893]
 gi|149360297|gb|EDM48750.1| peptidyl-prolyl cis-trans isomerase C2 [Marinobacter algicola
           DG893]
          Length = 92

 Score = 64.7 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 9/78 (11%), Positives = 26/78 (33%), Gaps = 1/78 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           + + ++ + +           ++ +S     + G         + P+F + +     N  
Sbjct: 14  EAKCEELKLAIEGGQDFAEVAKQHSSCPSGRNGGDLGAFGPGQMVPEFDKVVFSGEVNKV 73

Query: 258 TNPYVTQKGVEYIAICDK 275
             P  TQ G   + +  +
Sbjct: 74  LGPVKTQFGYHLLEVTSR 91


>gi|23013326|ref|ZP_00053234.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 106

 Score = 64.7 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 9/89 (10%), Positives = 24/89 (26%), Gaps = 1/89 (1%)

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
           +     +++      I + +E   +         +++        G      +  + P+F
Sbjct: 18  MRSQATRSKDEALTEINNIKEELNQGADFGQMARQYSDCPSGEDGGDLGEFPKGAMVPEF 77

Query: 247 QNLLKK-SQNNTTNPYVTQKGVEYIAICD 274
           +           +    T  G   I   D
Sbjct: 78  EVAAFALKSGEVSGVVETPFGFHLIQRTD 106


>gi|313682198|ref|YP_004059936.1| ppic-type peptidyl-prolyl cis-trans isomerase [Sulfuricurvum
           kujiense DSM 16994]
 gi|313155058|gb|ADR33736.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfuricurvum
           kujiense DSM 16994]
          Length = 92

 Score = 64.7 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 6/79 (7%), Positives = 17/79 (21%), Gaps = 1/79 (1%)

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNN 256
            +    + ++               +        G         +  +F   +       
Sbjct: 13  TEAECNELKKQIEEGASFAEIAADNSQCPSGRKGGDLGRFSPGQMVKEFDTAVFNGDVGV 72

Query: 257 TTNPYVTQKGVEYIAICDK 275
              P  TQ G   + +  +
Sbjct: 73  LYGPIKTQFGYHLLEVTAR 91


>gi|193214213|ref|YP_001995412.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroherpeton
           thalassium ATCC 35110]
 gi|193087690|gb|ACF12965.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroherpeton
           thalassium ATCC 35110]
          Length = 699

 Score = 64.7 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 53/225 (23%), Gaps = 3/225 (1%)

Query: 50  VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
            IT+ DI       K       + +            +  +E                  
Sbjct: 216 EITEADIRNYFNEHKEDYKQDPVREANFVMFSTAATTEDTLEIIHDLEALKPKFQTAKND 275

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
                L ++ F+ F+     G    K            V +         E +I      
Sbjct: 276 TEFVELQSDRFADFVKTYRPGKLDAKISRLFFDNPSLKVGDVVGPFQEFSEYKI-VKILA 334

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HD 228
           + +   R+     +L      +  +   V    K          K      + +      
Sbjct: 335 IDSDEDRQAHASHILLKPEGARRADTLAVMAEAKQLMRELTSDEKFAEVAREKSDDPGSA 394

Query: 229 VSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAI 272
              G   +  +  +  +F++            P  +Q G+  I +
Sbjct: 395 QKGGDLGWFGKGRMVKEFEDAVFHAKPGQIVGPIQSQFGIHIIKV 439



 Score = 51.6 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
            +   +NP  T++GV    +  K           K  L  Q    K ++    ++K L+ 
Sbjct: 630 DEGKVSNPIETKRGVAIAELTKKIKGFDSDFEVRKNALKDQILQEKKKEVMNNWLKDLKE 689

Query: 311 NAIIH 315
           +A I 
Sbjct: 690 SAKIE 694



 Score = 41.2 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/252 (8%), Positives = 66/252 (26%), Gaps = 27/252 (10%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
            +K+  S+   +  L   FVL+I     +  +            +NG+ I+  +      
Sbjct: 1   MNKMRDSMHIVLYALVGAFVLLIVFEWGMD-FTGLNRRKTDAGVVNGKPISLTEYDATYR 59

Query: 62  LLK------------LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV-- 107
                           ++++  +   A   L+ + L   + E+ G+      +    +  
Sbjct: 60  RYLDGFRQRSNNVEISEQMDARMRDQAWDFLVSQILLDDKYEELGLFVTDEEIVSEVMSD 119

Query: 108 ------------QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
                                A   +    +        +  +  + ++  +        
Sbjct: 120 DPPAIIAQQFRDPKTGKINTEALQAAIASPENKEAWIQVEDIIRQELLFKKLQNLVMSGV 179

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
           +   +       ++   ++ R  L               +  ++    + +E   + P  
Sbjct: 180 FVTDDEARRLFDEQNTKVSGRYILFELAHAKADSLYEITEADIRNYFNEHKEDYKQDPVR 239

Query: 216 CNKLEKFASKIH 227
                 F++   
Sbjct: 240 EANFVMFSTAAT 251


>gi|221198560|ref|ZP_03571605.1| ppic-type ppiase domain protein [Burkholderia multivorans CGD2M]
 gi|221207789|ref|ZP_03580796.1| ppic-type ppiase domain protein [Burkholderia multivorans CGD2]
 gi|221172286|gb|EEE04726.1| ppic-type ppiase domain protein [Burkholderia multivorans CGD2]
 gi|221181011|gb|EEE13413.1| ppic-type ppiase domain protein [Burkholderia multivorans CGD2M]
          Length = 262

 Score = 64.7 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 49/171 (28%), Gaps = 5/171 (2%)

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
            +          +      +      R  ++                 +++R + A    
Sbjct: 79  RELTHVPEPDRADCERYYAQHPARFRRNDIVYASHVLFAVTDRVPLAPLRQRAERALADV 138

Query: 210 LRLPKDCNK-LEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ--NNTTNPYVTQKG 266
           +  P   +      ++       G    LL  D  P+F+  L  +           T+ G
Sbjct: 139 VAAPDTFDAVARASSNCPSAQLGGSLGQLLRGDTVPEFEAALFDTDGLGVLPKLVNTRFG 198

Query: 267 VEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
              + I  +   D     A+ A ++A  T    ++   +YV  L   A I 
Sbjct: 199 FHIVRIDHRVPGDTVPFDAVAAQIAAHLTARVRQRAMRQYVAILAGGAHIE 249


>gi|83816153|ref|YP_445540.1| peptidylprolyl cis-trans isomerase [Salinibacter ruber DSM 13855]
 gi|83757547|gb|ABC45660.1| peptidylprolyl cis-trans isomerase [Salinibacter ruber DSM 13855]
          Length = 691

 Score = 64.7 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/367 (8%), Positives = 96/367 (26%), Gaps = 60/367 (16%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
            + +  +    + +L   F  II+ +     + +   ++R   T+NG  I + D  + + 
Sbjct: 4   MNTLRQNTGVILWILVLSF-GIIWTLQDSDVFSAMNQTNRNVATVNGNPIQNEDYQRILK 62

Query: 62  LLKLQ-----------KINGELEKIAVQELIVETLKKQEIEKSGITFDS---------NT 101
             + +           ++   + + A  +++ + L +QE+++ GI+              
Sbjct: 63  RQRQRFQQQMGGDMNPQMESRVRERAYNQVVNQELLQQEMKRLGISVTDSEVEAMVFGEN 122

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---FMLKYGN 158
            +    +   ++                        L          +            
Sbjct: 123 PHPVIRRQFADSTGQINYQLLQNMASNPEARTQWIKLEEFLRRQRRQQKMSSLVQSTIQV 182

Query: 159 LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
            E +I    ++  +    +Y+         D+    +  ++    +  E+  R      +
Sbjct: 183 SEADIKDYYRRQNSSASAQYVALRYARVSDDSITVTESDLRDYYDNNREAYKREKTVTLQ 242

Query: 219 LEKFASKIHDVSI----GKA----------------------------QYLLESDLHPQF 246
               + +          G                               Y     ++ + 
Sbjct: 243 YATTSKEATAEDSSGIAGDLAGLRADFATTENDSLFLLNNASDQDFSSAYRTPDQMNARV 302

Query: 247 QNLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            + +           P         + + D R    +     ++       + +   A  
Sbjct: 303 ADSVYASPEPGRIVGPVFGGGQAHLLKVRDTRPAENDFLHARHIL--LKTDQADSEVAGR 360

Query: 305 VKKLRSN 311
           ++ +R +
Sbjct: 361 LRAIRDS 367



 Score = 63.5 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/249 (8%), Positives = 56/249 (22%), Gaps = 12/249 (4%)

Query: 33  YKSWAMSSRIR---TTINGEVIT--DGDISKRIALLKLQKINGELEKIAVQELIVETLKK 87
             S A +  +      ++ + IT  + D+       +         K    +    + + 
Sbjct: 194 QNSSASAQYVALRYARVSDDSITVTESDLRDYYDNNREAYKRE---KTVTLQYATTSKEA 250

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
              + SGI  D   +   F     ++     + S                    S++   
Sbjct: 251 TAEDSSGIAGDLAGLRADFATTENDSLFLLNNASDQDFSSAYRTPDQMNARVADSVYASP 310

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
                +              +  +         R +L         +     +     + 
Sbjct: 311 EPGRIVGPVFGGGQAHLLKVRDTRPAENDFLHARHILLKT---DQADSEVAGRLRAIRDS 367

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKG 266
                        +++        G   +     +   F++            P  ++ G
Sbjct: 368 LEAGAASFAEMARRYSDDGSASDGGDLGWFARGSMVDAFEDAAFGAEPGTLVGPVRSEFG 427

Query: 267 VEYIAICDK 275
              I +  +
Sbjct: 428 YHLIRVEAR 436



 Score = 49.3 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 6/77 (7%), Positives = 20/77 (25%), Gaps = 1/77 (1%)

Query: 240 SDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR-DLGGEIALKAYLSAQNTPTKIE 298
                    +    +  T+           +    K          +  L  +    + +
Sbjct: 608 GQEPQFVGTVFGLDEGETSGVVAGNNAAFIVKTTQKTTPPPLTDQKRKQLRQRLLKQRRQ 667

Query: 299 KHEAEYVKKLRSNAIIH 315
           +  + ++  L+ +A I 
Sbjct: 668 QVSSNWIAALKEDATIK 684


>gi|330504383|ref|YP_004381252.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina NK-01]
 gi|328918669|gb|AEB59500.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina NK-01]
          Length = 93

 Score = 64.7 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 8/82 (9%), Positives = 25/82 (30%), Gaps = 1/82 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-N 255
             + +  + + +           +  ++     S G         +  +F  ++  +   
Sbjct: 12  ASEDKCNELKSAIEGGADFAQLAKDNSTCPSGRSGGDLGSFGPGQMVKEFDTVVFSAPVG 71

Query: 256 NTTNPYVTQKGVEYIAICDKRD 277
               P  TQ G   + +  ++D
Sbjct: 72  VVQGPVKTQFGYHLLEVTSRQD 93


>gi|327441514|dbj|BAK17879.1| parvulin-like peptidyl-prolyl isomerase [Solibacillus silvestris
           StLB046]
          Length = 287

 Score = 64.7 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 82/299 (27%), Gaps = 40/299 (13%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           ++ I      +        + I  T     IT     +++  +             ++++
Sbjct: 5   LIGITMTASFLMAACGNTDNEIVATTAYGDITKSGFYEQMKEIAGTT--------LLEQV 56

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           +++ +   + E S    +     Y          +  E F S L   G  +  FK  +  
Sbjct: 57  VIDKILTDQYEVSDKEIEEQLETYI--------EMYGESFESALATNGYTEETFKDTIRF 108

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           Q +    +++                  ++    +  Y  +        + L       +
Sbjct: 109 QLLQQKAMEDV-----------------EVTEEEIETYYDQGKYELHTRHILVETEEEAQ 151

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN 259
           ++ +             +  + +      + G   +L  SD+   F +          + 
Sbjct: 152 QLYEQISEGSDFETIAKESSQDSE--TAENGGNLGWLSISDMETTFADAAYALETGEVSE 209

Query: 260 PYVTQKGVEYIAICDKRDLGGE---IALKAYLSAQNTPT-KIEKHEAEYVKKLRSNAII 314
           P  +  G E I + DKR++         K  +                   +L   A +
Sbjct: 210 PVESTLGFEIIQLVDKREVKDYALLEEQKEEIKKTLRERIVANTEWETVEARLLKEANV 268


>gi|294507423|ref|YP_003571481.1| peptidyl-prolyl cis-trans isomerase D [Salinibacter ruber M8]
 gi|294343751|emb|CBH24529.1| Putative peptidyl-prolyl cis-trans isomerase D [Salinibacter ruber
           M8]
          Length = 691

 Score = 64.7 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/367 (8%), Positives = 96/367 (26%), Gaps = 60/367 (16%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
            + +  +    + +L   F  II+ +     + +   ++R   T+NG  I + D  + + 
Sbjct: 4   MNTLRQNTGVILWILVLSF-GIIWTLQDSDVFSAMNQTNRNVATVNGNPIQNEDYQRILK 62

Query: 62  LLKLQ-----------KINGELEKIAVQELIVETLKKQEIEKSGITFDS---------NT 101
             + +           ++   + + A  +++ + L +QE+++ GI+              
Sbjct: 63  RQRQRFQQQMGGDMNPQMESRVRERAYNQVVNQELLQQEMKRLGISVTDSEVEAMVFGEN 122

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---FMLKYGN 158
            +    +   ++                        L          +            
Sbjct: 123 PHPVIRRQFADSTGQINYQLLQNMASNPEARTQWIKLEEFLRRQRRQQKMSSLVQSTIQV 182

Query: 159 LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
            E +I    ++  +    +Y+         D+    +  ++    +  E+  R      +
Sbjct: 183 SEADIKDYYRRQNSSASAQYVALRYARVSDDSITVTESDLRDYYDNNREAYKREKTVTLQ 242

Query: 219 LEKFASKIHDVSI----GKA----------------------------QYLLESDLHPQF 246
               + +          G                               Y     ++ + 
Sbjct: 243 YATTSKEATAEDSSGIAGDLAGLRADFATTENDSLFLLNNASDQDFSSAYRTPDQMNARV 302

Query: 247 QNLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            + +           P         + + D R    +     ++       + +   A  
Sbjct: 303 ADSVYASPEPGRIVGPVFGGGQAHLLKVRDTRPAENDFLHARHIL--LKTDQADSEVAGR 360

Query: 305 VKKLRSN 311
           ++ +R +
Sbjct: 361 LRAIRDS 367



 Score = 63.5 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/249 (8%), Positives = 56/249 (22%), Gaps = 12/249 (4%)

Query: 33  YKSWAMSSRIR---TTINGEVIT--DGDISKRIALLKLQKINGELEKIAVQELIVETLKK 87
             S A +  +      ++ + IT  + D+       +         K    +    + + 
Sbjct: 194 QNSSASAQYVALRYARVSDDSITVTESDLRDYYDNNREAYKRE---KTVTLQYATTSKEA 250

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
              + SGI  D   +   F     ++     + S                    S++   
Sbjct: 251 TAEDSSGIAGDLAGLRADFATTENDSLFLLNNASDQDFSSAYRTPDQMNARVADSVYASP 310

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
                +              +  +         R +L         +     +     + 
Sbjct: 311 EPGRIVGPVFGGGQAHLLKVRDTRPAENDFLHARHILLKT---DQADSEVAGRLRAIRDS 367

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKG 266
                        +++        G   +     +   F++            P  ++ G
Sbjct: 368 LEAGAAFFAEMARRYSDDGSASDGGDLGWFARGSMVDAFEDAAFGAEPGTLVGPVRSEFG 427

Query: 267 VEYIAICDK 275
              I +  +
Sbjct: 428 YHLIRVEAR 436



 Score = 49.3 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 6/77 (7%), Positives = 20/77 (25%), Gaps = 1/77 (1%)

Query: 240 SDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR-DLGGEIALKAYLSAQNTPTKIE 298
                    +    +  T+           +    K          +  L  +    + +
Sbjct: 608 GQEPQFVGTVFGLDEGETSGVVAGNNAAFIVKTTQKTTPPPLTDQKRKQLRQRLLKQRRQ 667

Query: 299 KHEAEYVKKLRSNAIIH 315
           +  + ++  L+ +A I 
Sbjct: 668 QVSSNWIAALKEDATIK 684


>gi|319952479|ref|YP_004163746.1| ppic-type peptidyl-prolyl cis-trans isomerase [Cellulophaga
           algicola DSM 14237]
 gi|319421139|gb|ADV48248.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cellulophaga
           algicola DSM 14237]
          Length = 706

 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 10/124 (8%), Positives = 36/124 (29%), Gaps = 2/124 (1%)

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS 253
            +    K  +   E++       +  ++ +        G   +  +  +   F + +  +
Sbjct: 374 KEEAESKAKEVLAEAKKSGAVFADLAKENSDGPSGPRGGDLGFFQKGAMVKPFNDFVFNN 433

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS--AQNTPTKIEKHEAEYVKKLRSN 311
              +     T  G   + + +K+DL     L   +    +      +      +  + + 
Sbjct: 434 GAGSIGLVETDFGFHIVKVEEKQDLYQVANLVREIEPSEETIDLLFQDATKFEMSTVENK 493

Query: 312 AIIH 315
           +   
Sbjct: 494 SKFE 497


>gi|293605263|ref|ZP_06687649.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
           43553]
 gi|292816319|gb|EFF75414.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
           43553]
          Length = 267

 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/276 (10%), Positives = 75/276 (27%), Gaps = 33/276 (11%)

Query: 44  TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
             +NG  ++D D+ +    L L        + A+  L++  +   E  + G+    +   
Sbjct: 3   VIVNGVELSDADLERE---LPLHADASNPMRHAITALVLRRVLLDEARRLGVP---SPAT 56

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
                 A+  G S +                        I   + +        +     
Sbjct: 57  AAEPGEAQEEGDSEDA----------------------IITALLARQAAAPVADDAACRR 94

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
             +    + +         +LF +  +   +           ++      +        +
Sbjct: 95  FYHANPQRFMVGELIEADHILFQVTPDVNLDM-LRAHANTVLQDLLADPSRFAEVARAQS 153

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLG-- 279
           +       G    L   D  P+F+  +    S         T+ G+  + +  + +    
Sbjct: 154 NCPSAAVGGNLGQLGRGDTVPEFERAVFALPSGGLLPQLLQTRHGLHIVRVTRRIEGRML 213

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
               +   ++A  +    +    +Y K L   A + 
Sbjct: 214 PYEHVAQQIAAALSSMSQDTAWRQYTKLLVEQADVQ 249


>gi|71734009|ref|YP_274529.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554562|gb|AAZ33773.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 93

 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 24/80 (30%), Gaps = 1/80 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNT 257
            ++  + +             +  +S       G         +  +F  ++  +  N  
Sbjct: 14  AEKCNELKAQIEGGADFAEIAKANSSCPSSRQGGDLGSFGPGQMVKEFDTVVFSAPVNTV 73

Query: 258 TNPYVTQKGVEYIAICDKRD 277
             P  TQ G   + +  ++D
Sbjct: 74  QGPVKTQFGYHLLEVTSRQD 93


>gi|226309756|ref|YP_002769650.1| hypothetical protein BBR47_01690 [Brevibacillus brevis NBRC 100599]
 gi|226092704|dbj|BAH41146.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 300

 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/280 (9%), Positives = 81/280 (28%), Gaps = 26/280 (9%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              +  + I++ +    +          +  K  + ++I   +  QE ++SGIT D   +
Sbjct: 35  AAIVGDKTISNDEYVTALK--------QKFGKQVLNDMINREVVFQEAKRSGITVDPKQL 86

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                Q   + G   +    F            + L  +  +  +++          + E
Sbjct: 87  EQELSQIRDSYGSRTDSE--FEAALIKQAGTTVEALKQEISYQILLQTLATKDMTIKDEE 144

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +        +   R   +R     +   K   Q           + +           + 
Sbjct: 145 LINVYNSRSDRYTRPMQVRLGQIVVASQKEAEQVLA--------DLKNGADFQTIAKARS 196

Query: 223 ASKIHDVSIGKAQY--LLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG 279
                 V+ G   +  + ++ L  + + +++K  ++  +     Q       + ++R+  
Sbjct: 197 IDADTAVNGGDVGWVSIKDNRLPDEAKPIVEKLEKDKYSEAIKIQDQYVIYQLRERREAS 256

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEY---VKKLRSNAIIHY 316
                   +  +                +++LR +  +  
Sbjct: 257 --QRTFEEVKDELRREMAFAQVESLDVVLERLRKSVGVQI 294


>gi|255022705|ref|ZP_05294691.1| foldase protein PrsA [Listeria monocytogenes FSL J1-208]
          Length = 262

 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/292 (8%), Positives = 84/292 (28%), Gaps = 46/292 (15%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +++  K++ +     +  +    S              +   +T  ++ + +        
Sbjct: 1   MTNLKKVMISVIAATLLLLAGCGSSA--------VVKTDAGSVTQDELYEAMKT------ 46

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
                   VQ+L  + + + +   +    ++                  E +    +   
Sbjct: 47  --TYGNEVVQQLTFKKILEDKYTVTEKEVNAEY------------KKYEEQYGDSFESTL 92

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
             +N  K        +  +V+          E ++    +        +  +R +L    
Sbjct: 93  SSNNLTKTSFKENLEYNLLVQKATEANMNVSESKLKTYYKTW----EPDITVRHIL---- 144

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQ 247
                     +   K+ +       K  +  +++++      + G        ++   F+
Sbjct: 145 -------VDDEATAKEIQTKLKNGEKFADLAKEYSTDTATSTNGGLLDPFGPGEMDETFE 197

Query: 248 NLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
                 +++++ +    +  G   I +  K + G     KA + A    +++
Sbjct: 198 KAAYALENKDDVSGIVKSTYGYHLIQLVKKTEKGTYDKEKANVKAAYIESQL 249


>gi|88803460|ref|ZP_01118986.1| peptidyl-prolyl cis-trans isomerase [Polaribacter irgensii 23-P]
 gi|88781026|gb|EAR12205.1| peptidyl-prolyl cis-trans isomerase [Polaribacter irgensii 23-P]
          Length = 460

 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/275 (10%), Positives = 74/275 (26%), Gaps = 12/275 (4%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL- 72
           K        ++F +     +        +   I   ++ D DI+K    ++L+       
Sbjct: 9   KYTKVLLTAVLFSVSIFQVHAQKIKIDGVAVVIGKNIVLDSDIAKFKQEIELRSEGKITI 68

Query: 73  -EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
            +   ++EL+ + L         +T     V+    +  +            +   G  D
Sbjct: 69  TDCEMLEELMQQKLLSHHAVIDSVTVSDAEVSNKVERSIQFFTQEYGSLEKVVSAYGFND 128

Query: 132 NHFKQYLAIQSIWPDVV----KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
               +         +++    +     K      E+      +K           +  + 
Sbjct: 129 LEDLKGELYNVQKDNILVEKEQLKITEKVDVTPEEVRLYFNGLKENGELPEFTAEIELAQ 188

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI-----GKAQYLLESDL 242
                      + R+ +      +   +       A             G  +   ES+ 
Sbjct: 189 IVLNSVPTDAEELRVLEQLTQIRKEVLEGASFRMKAIINSKDPGVTRDNGLMEVTKESNF 248

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR 276
             +F+ +     Q+  + P+ T  G   I +   +
Sbjct: 249 IKEFKEVSFSLEQDEISKPFKTLFGYHIIKLHTIK 283


>gi|296535271|ref|ZP_06897478.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
 gi|296264392|gb|EFH10810.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
          Length = 507

 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/393 (9%), Positives = 93/393 (23%), Gaps = 83/393 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVI--TDGDISK 58
           M + +      +   +    +++ F +  I        S      +  + I   +   + 
Sbjct: 1   MLTALRRLAGTWFAKILFALLVLSFAVWGIEDIVRQFGSDTSVARVGRDAIEVPEAQAAA 60

Query: 59  RIALLKLQKI-----------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
           R  + ++Q+               L + AV+ L++E +++QE    G+      V  +  
Sbjct: 61  RREIGRVQRQLGGSFEITPEMGEALTRQAVEGLVMERVQRQEARHLGLAVPEAAVRDYVW 120

Query: 108 QHARNTGLSAEDFSS----FLDKQGIGDNHFKQYLAIQSIWPDVV--------------- 148
                 G            FL    + +  F   L        +V               
Sbjct: 121 GIPAFQGPDGRFNRIAFDSFLRNNQLSEGEFLTLLRADLERQQMVGAVRAGAAGPDALTR 180

Query: 149 -------KNDFMLKYG-----------NLEMEIPANKQKMKNITVREYLIRTVLFS---- 186
                  +                     E ++    +   +        R  L      
Sbjct: 181 PLLAWEREQRLAEIVRLPFSAAPEPAAPEEAQLRRFHENNADRFSAPEYRRVTLAVLSPE 240

Query: 187 -IPDNKLQNQGFVQKRIKDAEESRLRLPKDC-------NKLEKFASKIHDVSIGK----- 233
            +  +    +  ++   +   +   R  +         ++ +  A               
Sbjct: 241 TVMGDVQATEEELRAAYEAHRDHYERPERRSLQQALLPDRAKAEALARQWREGADFAAIT 300

Query: 234 ------------AQYLLESDLH--PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK--RD 277
                             + L      +      Q   + P  +  G   + +      +
Sbjct: 301 QAAEAAGGQATELGESDRAGLPLPELAEAAFTLPQGGVSEPVQSPFGWHVVHVTAIAAGE 360

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
             G  A++  + AQ    +      E   ++  
Sbjct: 361 DRGFEAVRPEVEAQVKRERAADLAYERANQVED 393


>gi|53723660|ref|YP_103105.1| peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei ATCC
           23344]
 gi|67642012|ref|ZP_00440775.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia mallei GB8
           horse 4]
 gi|254177616|ref|ZP_04884271.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           ATCC 10399]
 gi|254200054|ref|ZP_04906420.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           FMH]
 gi|254206388|ref|ZP_04912740.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           JHU]
 gi|52427083|gb|AAU47676.1| peptidyl-prolyl cis-trans isomerse D, putative [Burkholderia mallei
           ATCC 23344]
 gi|147749650|gb|EDK56724.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           FMH]
 gi|147753831|gb|EDK60896.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           JHU]
 gi|160698655|gb|EDP88625.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
           ATCC 10399]
 gi|238523056|gb|EEP86497.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia mallei GB8
           horse 4]
          Length = 644

 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/303 (7%), Positives = 68/303 (22%), Gaps = 29/303 (9%)

Query: 26  CIVPIVSYKSWAMSSRIRT---TINGEVITDGDISKRIALLKLQ-KINGELEKIAVQELI 81
                 + +   +S  +       +G      D  +   +L +Q     + ++     L 
Sbjct: 107 LSTSDGAVRQTLLSDPVIASLKKADG----SFDAERYTQMLAMQGMTPDQYQERVRYNLA 162

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ---------GIGDN 132
           ++ +    +  +              +  R         + +  K              +
Sbjct: 163 LQQIPASIVSSAFTPKSVARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAH 222

Query: 133 HFKQYLAIQSIWPDVV--KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                    +    +V  +          +++I             +  +R     I   
Sbjct: 223 KQAFATRETATIQYLVYSQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAA 282

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-----SKIHDVSIGKAQYLLESDLHPQ 245
           K  +          AE+    +    ++  + A             G   ++        
Sbjct: 283 KDASAAEKAAAKAKAEQLLAEVKAHPDRFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGG 342

Query: 246 FQNLLKK---SQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKH 300
                      ++  +       G   +   D +    +    +K  ++         K 
Sbjct: 343 AAFDDAAFALKKDEISGVVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLRQQFAAKA 402

Query: 301 EAE 303
            A+
Sbjct: 403 FAD 405



 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/236 (8%), Positives = 67/236 (28%), Gaps = 18/236 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIF---CIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
           +     +  +L+  + +LI+     IV I  ++ +   S     +NG  IT  +    + 
Sbjct: 1   MLDFFRNHQRLMMFFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGTLR 60

Query: 62  LLKLQKIN-------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF-- 106
               Q                 E  +  +  LI +     E ++  ++     V      
Sbjct: 61  QQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSTSDGAVRQTLLS 120

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
                +   +   F +    Q +           + +  ++          +      + 
Sbjct: 121 DPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKSV 180

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            +++  +  ++  ++ ++    D   + Q    +     +  +           ++
Sbjct: 181 ARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQY 236


>gi|226197150|ref|ZP_03792727.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei Pakistan 9]
 gi|225930529|gb|EEH26539.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei Pakistan 9]
          Length = 644

 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/303 (7%), Positives = 68/303 (22%), Gaps = 29/303 (9%)

Query: 26  CIVPIVSYKSWAMSSRIRT---TINGEVITDGDISKRIALLKLQ-KINGELEKIAVQELI 81
                 + +   +S  +       +G      D  +   +L +Q     + ++     L 
Sbjct: 107 LSASDGAVRQTLLSDPVIASLKKADG----SFDAERYTQMLAMQGMTPDQYQERVRYNLA 162

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ---------GIGDN 132
           ++ +    +  +              +  R         + +  K              +
Sbjct: 163 LQQIPASIVSSAFTPKSVARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAH 222

Query: 133 HFKQYLAIQSIWPDVV--KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                    +    +V  +          +++I             +  +R     I   
Sbjct: 223 KQAFATRETATIQYLVYSQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAA 282

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-----SKIHDVSIGKAQYLLESDLHPQ 245
           K  +          AE+    +    ++  + A             G   ++        
Sbjct: 283 KDASAAEKAAAKAKAEQLLAEVKAHPDRFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGG 342

Query: 246 FQNLLKK---SQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKH 300
                      ++  +       G   +   D +    +    +K  ++         K 
Sbjct: 343 AAFDDAAFALKKDEISGVVQGDFGFHILKATDVKPAVVKRLAEVKDSIATDLRQQFAAKA 402

Query: 301 EAE 303
            A+
Sbjct: 403 FAD 405



 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/236 (8%), Positives = 67/236 (28%), Gaps = 18/236 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIF---CIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
           +     +  +L+  + +LI+     IV I  ++ +   S     +NG  IT  +    + 
Sbjct: 1   MLDFFRNHQRLMMFFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGTLR 60

Query: 62  LLKLQKIN-------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF-- 106
               Q                 E  +  +  LI +     E ++  ++     V      
Sbjct: 61  QQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTLLS 120

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
                +   +   F +    Q +           + +  ++          +      + 
Sbjct: 121 DPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKSV 180

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            +++  +  ++  ++ ++    D   + Q    +     +  +           ++
Sbjct: 181 ARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQY 236


>gi|324999487|ref|ZP_08120599.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudonocardia sp.
           P1]
          Length = 353

 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 74/291 (25%), Gaps = 29/291 (9%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQ-------------ELIVETLKKQE 89
              +N  V+++ D   ++  +K      +  + A +              L+VE      
Sbjct: 58  VLRVNDVVLSEADFQGQVDEIKALYGVEQPSEDADRDRFRRDAAQATAASLVVEQA---A 114

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
            E++ +  ++   +       R       DF   L   G+ +      L  Q +   + +
Sbjct: 115 AEQNVVGPETEVQDALARIVEREFPGGRADFVRALGNLGVSEPDLTAELHRQLVTSRLFE 174

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
                     + ++     + ++              +      +         D     
Sbjct: 175 QVTAGVPPVTDQDVRTAFDERRDQMQVPEQRELRNIVVDSRDKAD---------DLRRRL 225

Query: 210 LRLPKDCNKLEKFASKIH-DVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGV 267
                        +       + G    L  + L   F +    +       P  T+ G 
Sbjct: 226 DDGADFATLARADSMDESTKQAGGALGKLPATALDQPFADAAFTTPSGGLFGPVQTRFGW 285

Query: 268 EYIAICDKRDLGG--EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
               +             +   L A  T  +      E++ +   +A I Y
Sbjct: 286 NLGQVAGITPAVPLTFEQVAENLRATLTDERAGDAWREWLGERIRDARIDY 336


>gi|212635970|ref|YP_002312495.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           piezotolerans WP3]
 gi|212557454|gb|ACJ29908.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           piezotolerans WP3]
          Length = 92

 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 8/80 (10%), Positives = 26/80 (32%), Gaps = 1/80 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +++ ++ ++  +      +  +  +S       G         +  +F + +     N
Sbjct: 12  ETEEKCEELKQQIIAGADFADVAKANSSCPSSAQGGDLGSFGPGMMVKEFDEVVFSAPLN 71

Query: 256 NTTNPYVTQKGVEYIAICDK 275
               P  TQ G   + +  +
Sbjct: 72  EVQGPVKTQFGYHLLEVTSR 91


>gi|304405852|ref|ZP_07387510.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           curdlanolyticus YK9]
 gi|304345095|gb|EFM10931.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           curdlanolyticus YK9]
          Length = 364

 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/281 (6%), Positives = 73/281 (25%), Gaps = 6/281 (2%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA---VQELIVETLKKQ 88
           +    +   ++        +TD +  + +    L     E+        ++ + E +  +
Sbjct: 40  TKAPASGEGKVIAEYKDGTVTDKEFDRYLGFFSLVNEQAEMYLTVPSMKEQFLREYIGYK 99

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
            +         ++      +       +A+  +    K                +   V+
Sbjct: 100 VLYSRVDEKSKDSSKEEVDKFVDQFKQTADSNAEMKAKMEKSGLTVDNAAWYYRMIVSVM 159

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
            +            I        N     +++          +  ++    K+ ++ ++ 
Sbjct: 160 DHSEQNVKDADMKAIYDKAPSDFNNITVRHILIGFKDPSTGKEKLSKADALKKAQEVKQK 219

Query: 209 RLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL--HPQFQNLLKKSQNNTTNPYVTQKG 266
                      ++++        G      E  +      +    +      +P  T+ G
Sbjct: 220 LEAGGDWAALAKQYSDDEGSKDKGGLYENQEPRVWVEAFKKAANTQEIGKIGDPVETEYG 279

Query: 267 VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
              + + +KR+      +      +   +       +++ K
Sbjct: 280 YHVMKV-EKRETRTWEQVPQATKDELRKSASTTVLNDFMTK 319


>gi|269123720|ref|YP_003306297.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Streptobacillus
           moniliformis DSM 12112]
 gi|268315046|gb|ACZ01420.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Streptobacillus
           moniliformis DSM 12112]
          Length = 599

 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/267 (11%), Positives = 84/267 (31%), Gaps = 4/267 (1%)

Query: 47  NGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF 106
           N   I+  D +   AL KL+++  E E+     + V +       K G  +  +  N   
Sbjct: 227 NNAKISISDKTIEPALNKLKEVFFEKEEYKFTYMDVLSQIVNLFFKQGNGYTEDFQNMIK 286

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
                +           ++     +        ++ I  + V           E      
Sbjct: 287 GLIETDLDKKIRIRDKAIESGLTLNQDLLPKYQLEYIAEEYVSKLIGSYVATEEEMRAIF 346

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
            +      ++  +   ++         +    + ++ +  ++  +     +K  + +   
Sbjct: 347 NKYQGAFDIQHTVSGEIIGMAYIPSDDDAKETENKVIELMKTITK-ENFADKARELSKDP 405

Query: 227 -HDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL 284
               + G       ++  P+F+  + K    +   P  TQ G   I + +K +   +IA 
Sbjct: 406 GSAQNGGDLGKANINNFVPEFRTAVAKAEAGSIVGPIKTQFGYHIILVEEKDENNKDIAT 465

Query: 285 KAYLSAQNTP-TKIEKHEAEYVKKLRS 310
             ++  +     + ++     V +++ 
Sbjct: 466 LKHILIKVEAGERTKEEIKNKVLEIKE 492


>gi|293400822|ref|ZP_06644967.1| putative foldase protein PrsA [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305848|gb|EFE47092.1| putative foldase protein PrsA [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 333

 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/325 (11%), Positives = 87/325 (26%), Gaps = 26/325 (8%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSY---------KSWAMSSRIRTTINGEVITDGDISKR 59
           +    K      + +IF    +                    +  TING+ I+  D+   
Sbjct: 2   IDTLKKQWFVVLIALIFIGFTVFIIYDTNKGKLPGKSENGKDVIATINGKSISADDLYDS 61

Query: 60  IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
           +           L   A   +I E++K  +  +         +N      A ++G SAE+
Sbjct: 62  MYKSNGGNTLLYLRFQA--AVIDESVKSTDEIEKTADQLKEYLNSNAQNQASSSGQSAEE 119

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
           +      +         Y          ++ D+      ++  +      +        +
Sbjct: 120 YLKTELAKYGFQEDELDYFCNVQAKMSKMQKDY------IDKHMEELFTPLYEKNKGRTV 173

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL-- 237
              ++     N    +     +  + +   +   +   K +           G   Y+  
Sbjct: 174 SHILVKMKDANNPTEEEMKTVKAIEKDLKTMSFAEVAKKYKDKGDTSSAEKGGFLGYMDS 233

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQ----KGVEYIAIC--DKRDLGGEIALKAYLSAQ 291
               +    +  LK  +   +N          G   I +   DK  +  +   K  + + 
Sbjct: 234 TTGFVDSFKKQALKMKKGEVSNWVKESNDNYNGWHMIKVEETDKDAILKDKKAKDSIYSA 293

Query: 292 NTPTKIEKHEAEYVKKLRSNAIIHY 316
                 +     Y+ +      + Y
Sbjct: 294 IENANSDLASK-YISEAMKKLDVTY 317


>gi|17549753|ref|NP_523093.1| signal peptide protein [Ralstonia solanacearum GMI1000]
 gi|17432008|emb|CAD18685.1| putative ppic-type peptidyl-prolyl cis-trans isomerase signal
           peptide protein [Ralstonia solanacearum GMI1000]
          Length = 282

 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/286 (11%), Positives = 78/286 (27%), Gaps = 54/286 (18%)

Query: 42  IRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           +   +NG  IT   + + IA   +Q    ++ +   Q+LI   L +Q+  K+        
Sbjct: 35  VIALVNGTRITQEQLDRAIAQSGVQANP-QVAQALKQQLIARELFRQQAAKNPAYDKLPA 93

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
           V                                 Q      I    +K++        E 
Sbjct: 94  VKQAM-----------------------------QEAHDAVITQAWLKDNIKPAPITEEQ 124

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
                   + ++  +EY  R +         Q    +++                   ++
Sbjct: 125 VKARYDAIVASLGDKEYKARVIQLGDDVTAAQVLAQLKQ-----------GGDFAKLAQQ 173

Query: 222 FASKIHDVSIGKAQYLLESD-----------LHPQFQNLLKKSQNNTTNPYVTQKGVEYI 270
           +++  + V  G   ++               L    +     +   +T P         +
Sbjct: 174 YSTAPNKVRGGDMDWVSFKVPVEEGKTQNLPLPLAREIAALGTGATSTAPVEVGSQRYIV 233

Query: 271 AICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            +   R   + G   ++  +       ++E+   + V  L   A +
Sbjct: 234 KVEAARPTQVPGYDTVRPAIRQALETAELERVTVQVVGGLLKQAKV 279


>gi|326795821|ref|YP_004313641.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas
           mediterranea MMB-1]
 gi|326546585|gb|ADZ91805.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas
           mediterranea MMB-1]
          Length = 613

 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/305 (8%), Positives = 79/305 (25%), Gaps = 22/305 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       I  +   F+++ F +  + +  +   SS     ++G+ IT   + +  
Sbjct: 1   MLQDIRDRSQSLIVKIIIGFIVVTFALFGVDALVTSFNSSETVAEVDGKEITRTQVLQTA 60

Query: 61  ALLKLQ-------------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
              + Q                  L++ A+  LI   + K + +   +      ++   V
Sbjct: 61  DTQRRQLISMMGNNIDPSLLDENLLQRRALDSLIELAVLKNQADGLELGVSDAQIDSLLV 120

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
              +       D + +L+           Y         + ++  + +  +   E     
Sbjct: 121 SAEQYQTDGVFDQNKYLNAIRSLGFTPLAYK------ERIKESYVLSQLRSAVTESEFAL 174

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
               N        +     +  +             + +       +D    E+      
Sbjct: 175 PSQVNAISELQNQKRTYEYVQFSLADQTEQTDVTDGELQAYYDDHQQDFVSPEQVKISYV 234

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY 287
            V+       ++            +     T     +     +     R      ++ A 
Sbjct: 235 VVTTDALATNVKVTDQELQNAYQTEIAGLDT---EERDASHILIDTSIRSEDEAKSIIAE 291

Query: 288 LSAQN 292
           + ++ 
Sbjct: 292 IQSKL 296



 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/260 (10%), Positives = 69/260 (26%), Gaps = 12/260 (4%)

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH-ARNTGLSAED 119
             +K   +  +L     +    E     ++       +      +     A  T  +   
Sbjct: 152 ERIKESYVLSQLRSAVTES---EFALPSQVNAISELQNQKRTYEYVQFSLADQTEQTDVT 208

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
                         F     ++  +  V  +         + E+    Q        E  
Sbjct: 209 DGELQAYYDDHQQDFVSPEQVKISYVVVTTDALATNVKVTDQELQNAYQTEIAGLDTEER 268

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLL 238
             + +      + ++    +  I + +          +  ++++         G+  ++ 
Sbjct: 269 DASHILIDTSIRSED--EAKSIIAEIQSKLASGDSFASLAKEYSDDPGSKDVGGELGFVA 326

Query: 239 ESDLHPQFQNLLKKSQNNTTNPY---VTQKGVEYIAIC--DKRDLGGEIALKAYLSAQNT 293
           +  L   F++                 TQ G+  I +   DK D      L+  L+A  T
Sbjct: 327 KGALGESFESFEDALFAMNVGDIQEAETQYGLHLIKLNAIDKADAPTLEELRDQLTADIT 386

Query: 294 PTKIEKHEAEYVKKLRSNAI 313
             K +    +  + +   A 
Sbjct: 387 ARKAKDALLDAQENIADLAY 406


>gi|320324321|gb|EFW80400.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320328556|gb|EFW84558.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330885585|gb|EGH19734.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 93

 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 10/80 (12%), Positives = 25/80 (31%), Gaps = 1/80 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNT 257
            ++ K+ +             +  +S       G         +  +F  ++  +  N  
Sbjct: 14  AEKCKELKAQIEGGADFAEIAKANSSCPSSRQGGDLGSFGPGQMVKEFDTVVFSAPVNTV 73

Query: 258 TNPYVTQKGVEYIAICDKRD 277
             P  TQ G   + +  ++D
Sbjct: 74  QGPVKTQFGYHLLEVTSRQD 93


>gi|224368980|ref|YP_002603144.1| PpiC1 [Desulfobacterium autotrophicum HRM2]
 gi|223691697|gb|ACN14980.1| PpiC1 [Desulfobacterium autotrophicum HRM2]
          Length = 93

 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 9/82 (10%), Positives = 23/82 (28%), Gaps = 1/82 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +   +D  +            +K +        G         + P+F + +  ++  
Sbjct: 12  DTEAMCQDLIDQINNGTDFAELAKKHSKCPSGRQGGDLGEFGPGQMVPEFDKVVFNEAVG 71

Query: 256 NTTNPYVTQKGVEYIAICDKRD 277
               P  T  G   + I  + +
Sbjct: 72  KPHGPVKTTFGFHVVEITSRTE 93


>gi|254514975|ref|ZP_05127036.1| conserved hypothetical protein [gamma proteobacterium NOR5-3]
 gi|219677218|gb|EED33583.1| conserved hypothetical protein [gamma proteobacterium NOR5-3]
          Length = 276

 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 87/302 (28%), Gaps = 44/302 (14%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           L+T     I+  +  +V      +       +NG  +   ++   +     +    +   
Sbjct: 9   LITGVAAGILIALTGLVDAGHAPLPDTTAALVNGTPVPRDELQSVLQRRAQEGAPVDQLL 68

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             + ++I E L  Q   + GI    + V    +Q    + L+ E   +  + Q       
Sbjct: 69  ATLDDMIDEELLIQRASELGILRRDSNVRVAIIQAMEKSILNEERGRNLAEAQLQEFYRD 128

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
              L  + +   + +     +     +                               + 
Sbjct: 129 NTALFAEPLRFQLEEIVVEDETQATAI--------------------------ITALREG 162

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ 254
                   ++   S  RLP+    L   + +     + + +   + D+            
Sbjct: 163 LSAKALAAENDAVSITRLPQVPLSLSALSRRFPQDLVSRLETAGKGDILTD--------- 213

Query: 255 NNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
                   +++G+  I I D R+        ++  +  +    + +    EY++ LR  A
Sbjct: 214 -------KSERGIRIIKILDVREANVPPFEDVRLSVLNELQMYRQDIAYEEYLEWLRQRA 266

Query: 313 II 314
            I
Sbjct: 267 DI 268


>gi|22124271|ref|NP_667694.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis KIM 10]
 gi|45442924|ref|NP_994463.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Microtus str. 91001]
 gi|170026250|ref|YP_001722755.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia
           pseudotuberculosis YPIII]
 gi|186893515|ref|YP_001870627.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia
           pseudotuberculosis PB1/+]
 gi|21957040|gb|AAM83945.1|AE013636_3 peptidyl-prolyl cis-trans isomerase C [Yersinia pestis KIM 10]
 gi|45437791|gb|AAS63340.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Microtus str. 91001]
 gi|169752784|gb|ACA70302.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia
           pseudotuberculosis YPIII]
 gi|186696541|gb|ACC87170.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia
           pseudotuberculosis PB1/+]
          Length = 98

 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 1/76 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           +K+  D               +KF++     + G      + D+ P F + +        
Sbjct: 20  EKQANDILAQLNNGANFQELAKKFSNCPSKRNGGDLGEFNKGDMVPAFDKAVFSCELLQP 79

Query: 258 TNPYVTQKGVEYIAIC 273
             P  TQ G   I + 
Sbjct: 80  YGPVKTQFGYHIIKVL 95


>gi|119356179|ref|YP_910823.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353528|gb|ABL64399.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
           phaeobacteroides DSM 266]
          Length = 700

 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/115 (13%), Positives = 32/115 (27%), Gaps = 2/115 (1%)

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           E    K K             +L        +    V++R+    ++            K
Sbjct: 329 EYRLLKIKEVRTAQPIARASHILLRFNPGNKEEVEKVRERMVMIFKNLQAGVPFETLAGK 388

Query: 222 FASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICD 274
           ++      V  G   +     + P+F   +   +      P  T+ G+  I +  
Sbjct: 389 YSEDPGSAVQGGDLGWFTRESMLPEFSAAVFSGTPGAVVKPVQTKFGLHIIKVTG 443



 Score = 52.4 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 47/135 (34%), Gaps = 12/135 (8%)

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI---GKAQYLLE-----SDLH 243
                 ++K     ++  L   +    L+K A+      +      +++           
Sbjct: 563 TAELVRLKKEPVLEKKLSLNAKQSGATLDKIAAAYPGTVVVTADDIRWVDGFIPGYGFDQ 622

Query: 244 PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE---IALKAYLSAQNTPTKIEKH 300
           P  + +   ++   + P  T  G   + +  K+++  E    A K   + +    K+ + 
Sbjct: 623 PLVEAMSAMTEGKLSGPVKTNDGYAIV-LLSKKNMPAERDVEAAKTAFTPKIIQDKLNRL 681

Query: 301 EAEYVKKLRSNAIIH 315
             EY   ++ NA+I 
Sbjct: 682 FTEYFATIKKNAVIE 696



 Score = 37.0 bits (83), Expect = 4.2,   Method: Composition-based stats.
 Identities = 19/177 (10%), Positives = 45/177 (25%), Gaps = 7/177 (3%)

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
           +   +S+ P+     F    G +   +                   +   I      +  
Sbjct: 404 WFTRESMLPEFSAAVFSGTPGAVVKPVQTKFGLHIIKVTGFDQTAVIASEIVRTIRPSTE 463

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE----SDLHPQFQNLLKK 252
            V    + A   +++      +      K+     G                        
Sbjct: 464 TVDSARRLAMAFQMQAKDKGLEKSASTEKLVVGKTGDFGKHTLIADIGFSDKITAFAFNG 523

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLG---GEIALKAYLSAQNTPTKIEKHEAEYVK 306
            +   ++   T+KG   + +    D G    +  LK  ++A+    K E    + + 
Sbjct: 524 KEGALSDVIETEKGFYVMKLTGVNDTGYRRLDADLKKRITAELVRLKKEPVLEKKLS 580


>gi|328465489|gb|EGF36718.1| protein secretion PrsA (post-translocation molecular chaperone)
           [Listeria monocytogenes 1816]
          Length = 261

 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/306 (8%), Positives = 87/306 (28%), Gaps = 48/306 (15%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           ++   K++ +     +  +    S              +   +T  ++ + +        
Sbjct: 1   MTKLKKVMISVIAATLLLLAGCGSSA--------VVKTDAGSVTQDELYEAMKT------ 46

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
                   VQ+L  + + + +   +    ++                  E +    +   
Sbjct: 47  --TYGNEVVQQLTFKKILEDKYTVTEKEVNAEY------------KKYEEQYGDSFESTL 92

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
             +N  K        +  +V+          E ++    +        +  +R +L    
Sbjct: 93  SSNNLTKTSFKENLEYNLLVQKATEANMNVSESKLKTYYKTW----EPDITVRHIL---- 144

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQ 247
                     +   K+ +       K  +  +++++      + G        ++   F+
Sbjct: 145 -------VDDEATAKEIQTKLKNGEKFTDLAKEYSTDTATSTNGGLLDPFGPGEMDETFE 197

Query: 248 NLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYV 305
                 +++++ +    +  G   I +  K + G     KA + A    +++       +
Sbjct: 198 KAAYALENKDDVSGIVKSTYGYHLIQLVKKTEKGTYAKEKANVKAAYIESQL--TTENMI 255

Query: 306 KKLRSN 311
             L+ +
Sbjct: 256 AALKKS 261


>gi|52842082|ref|YP_095881.1| hypothetical protein lpg1855 [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629193|gb|AAU27934.1| peptidyl prolyl cis-trans isomerase D [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 624

 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 68/233 (29%), Gaps = 8/233 (3%)

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
                EI++    +       +    +      A+     +       +     L   ++
Sbjct: 167 FALSDEIKRFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTLEQVTL 226

Query: 144 WPDVVK-NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
              ++  +D   +      EI +  ++ K+  +     R         +   +       
Sbjct: 227 DYVLLSMHDIKSQIKISPDEIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIK 286

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDV-----SIGKAQYLLESDLHPQFQNLLKKSQNNT 257
           + A+E    L K   + +K+ +   D      + G   ++                    
Sbjct: 287 QKADEVYSDLKKHPEQFDKYVASKSDDKLSIANKGILPWITGGQNEYDRVLSNLTRPGQI 346

Query: 258 TNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKL 308
           + P  T+ G E   +   + +  +    ++  +  Q T    +   A+ +++L
Sbjct: 347 SIPVQTKYGYEIFKLIAYKPVTTKSLQEVENIIMDQLTSDMAQAKYAQVLEQL 399



 Score = 60.1 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 56/218 (25%), Gaps = 8/218 (3%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+   +   +  L    + I F +  +  Y      S  +  +N   IT        
Sbjct: 1   MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSRQISDAKVIVNDRPITMQAFETNY 60

Query: 61  ALLKLQK--------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
              + Q+            L+   + ++I   +  Q   K G        N   VQ  + 
Sbjct: 61  RRTRAQQDLPQMTAADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQANAAIVQIPQF 120

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
                     +           + +         + +  F     +  +     +     
Sbjct: 121 QEDGHFSAQRYQQALSGALFTPETFQNEVRQGMLLNQQRFAFMGTSFALSDEIKRFVRLY 180

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
           +  R+Y   TV     + + +      K   +    + 
Sbjct: 181 MQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKF 218


>gi|77459294|ref|YP_348801.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           fluorescens Pf0-1]
 gi|77383297|gb|ABA74810.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens Pf0-1]
          Length = 93

 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 8/80 (10%), Positives = 24/80 (30%), Gaps = 1/80 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           + +  + +             +  ++       G         +  +F  ++  +  N  
Sbjct: 14  EAKCNELKAQIEGGADFAEVAKANSTCPSSRQGGDLGSFGPGQMVKEFDTVVFSAPINVV 73

Query: 259 -NPYVTQKGVEYIAICDKRD 277
             P  TQ G   + +  ++D
Sbjct: 74  QGPVKTQFGYHLLEVTSRQD 93


>gi|289422879|ref|ZP_06424710.1| putative foldase protein PrsA [Peptostreptococcus anaerobius 653-L]
 gi|289156709|gb|EFD05343.1| putative foldase protein PrsA [Peptostreptococcus anaerobius 653-L]
          Length = 325

 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/325 (12%), Positives = 103/325 (31%), Gaps = 33/325 (10%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--- 69
           IK     F+  +  I+  +++ +      I  + +   +   +++  I L K +  +   
Sbjct: 3   IKKNKFTFICALILILMPITFLACKQ-DEIVASTDKFDVRLSEVNDNIKLAKFEYNSIFG 61

Query: 70  ---------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
                           + +K  +  LI+   K +E +K+G ++    +N       +N  
Sbjct: 62  DDSWKSVVVSSDGSTEQFKKSVIDYLIMSHYKDEENKKNGYSYSEEELNDMLDSAKQNIE 121

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
                 + +           K          +  + +F  +    E +I    +   N  
Sbjct: 122 EDKIKSNEYKSLNIDDHVLKKYIRDKMIENKN--QEEFNKRVKIKEEDIKKYYKDKINEF 179

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS-IGK 233
             +      ++    N         K          +       ++K++   +  +  G 
Sbjct: 180 KEKEFDCYQIWIKNPNDKIKAENAYK-------DLKKGMDFSTVVKKYSEDENSKNKGGY 232

Query: 234 AQYLLESDLHPQFQNLLKKSQN-NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN 292
              + + +L P+ +      ++   T    ++ G   I I ++R+L   +        + 
Sbjct: 233 IGKIKKENLIPELREKALIMRDKEYTGVVKSKDGYFIIKIDNQRNLTKTLDS---CRTKI 289

Query: 293 TPTKIEKHEAEYVKKLRSNAIIHYY 317
               +EK   E  KK+ +   + YY
Sbjct: 290 KDDLLEKLYQENNKKIINRIGVKYY 314


>gi|167033786|ref|YP_001669017.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           GB-1]
 gi|166860274|gb|ABY98681.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           GB-1]
          Length = 93

 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 8/80 (10%), Positives = 25/80 (31%), Gaps = 1/80 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNT 257
           +++  + +             +  ++       G         +  +F  ++  +  N  
Sbjct: 14  EEKCNELKAQIEAGADFAEIAKANSTCPSSRQGGDLGSFGPGQMVKEFDTVVFSAPVNTV 73

Query: 258 TNPYVTQKGVEYIAICDKRD 277
             P  TQ G   + +  ++D
Sbjct: 74  QGPVKTQFGYHLLEVTSRQD 93


>gi|307823841|ref|ZP_07654069.1| nitrogen fixation protein NifM [Methylobacter tundripaludum SV96]
 gi|307735135|gb|EFO05984.1| nitrogen fixation protein NifM [Methylobacter tundripaludum SV96]
          Length = 292

 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/246 (10%), Positives = 68/246 (27%), Gaps = 8/246 (3%)

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
            + +  A+ E  +E+      E + +      + +   Q  R+     + F S L+K  +
Sbjct: 36  QQAQIQALNEFRIESRVLNTPEAAAVIITDQELQHA-YQEIRDRYDDEDAFFSDLEKNRL 94

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                +  L  Q     V+++         E++I                       I  
Sbjct: 95  SKASLQAALHRQCKVNTVLESIASHAPAISEIDIGIYYHLHAEQFNCPERREVSHIFISI 154

Query: 190 NKLQNQ----GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL-HP 244
           N    +      + +  + AE+   +  K  +   + +     +  G    +    L   
Sbjct: 155 NPDYAENTPEAALSRAQELAEKLHKKPHKFADLALRHSECPTALQGGVLGIVPRGTLYPE 214

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA--YLSAQNTPTKIEKHEA 302
               L        ++   ++ G+  +     +        KA   +            + 
Sbjct: 215 LDAVLFNLKPGEVSDVVKSEIGLHLLLCKSIQKAETLSLAKATPKIRQLMKERARRTCQR 274

Query: 303 EYVKKL 308
            ++  L
Sbjct: 275 AWLAGL 280


>gi|19075413|ref|NP_587913.1| peptidyl-prolyl cis-trans isomerase Pin1 [Schizosaccharomyces pombe
           972h-]
 gi|21542175|sp|O74448|PIN1_SCHPO RecName: Full=Peptidyl-prolyl cis-trans isomerase pin1;
           Short=PPIase pin1
 gi|3560257|emb|CAA20742.1| peptidyl-prolyl cis-trans isomerase Pin1 [Schizosaccharomyces
           pombe]
          Length = 175

 Score = 64.3 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 10/154 (6%), Positives = 31/154 (20%), Gaps = 1/154 (0%)

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
           +   F + +              +     + N+        E       +    +     
Sbjct: 19  NRPYFFNTETHESLWEPPAATDMAALKKFIANELQESVTPTEASNSPKIRASHLLVKHRE 78

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
             R   +         +   +      +  +       +   K +        G+     
Sbjct: 79  SRRPSSWKEEHITRSKEEARKLAEHYEQLLKSGSVSMHDLAMKESDCSSARRGGELGEFG 138

Query: 239 ESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
             ++   F++          +    T  G   I 
Sbjct: 139 RDEMQKPFEDAAFALKPGEISGVVETSSGFHIIQ 172


>gi|238784761|ref|ZP_04628764.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia bercovieri
           ATCC 43970]
 gi|238714357|gb|EEQ06366.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia bercovieri
           ATCC 43970]
          Length = 93

 Score = 64.3 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 1/76 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           +K+  D               +KF++     + G      + D+ P F + +        
Sbjct: 15  EKQANDILAQLNNGADFQELAKKFSNCPSKRNGGDLGEFNKGDMVPAFDKAVFSCELLQP 74

Query: 258 TNPYVTQKGVEYIAIC 273
             P  TQ G   I + 
Sbjct: 75  YGPVKTQFGYHIIKVL 90


>gi|189345807|ref|YP_001942336.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium limicola
           DSM 245]
 gi|189339954|gb|ACD89357.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium limicola
           DSM 245]
          Length = 701

 Score = 64.3 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 12/95 (12%), Positives = 31/95 (32%), Gaps = 2/95 (2%)

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLES 240
            +L        ++   V++R+ +               ++++      V  G   +    
Sbjct: 350 HILLQFNPASREDVAKVRERMVEIYRKLQSGESFEALAKQYSQDSGSAVKGGDIGWFGRK 409

Query: 241 DLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICD 274
            + P+F + +        T P  T+ G+  I +  
Sbjct: 410 SVVPEFAEAVFSSRPGALTRPVQTKFGLHIIKVTG 444



 Score = 49.7 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 35/123 (28%), Gaps = 6/123 (4%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN 255
             +         +   +           +     + G           P  + +      
Sbjct: 578 KQLASLSAKPGATLETIAAGNKAFSIVKADDIRWTDGYIPGYGIDR--PLVEAISGMKSG 635

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALKAY---LSAQNTPTKIEKHEAEYVKKLRSNA 312
             + P  T  G   + + DKR L G + +K     +       K E+  AEY   +R +A
Sbjct: 636 LLSRPVKTTGGYALVRL-DKRVLAGGVDMKEAKAGILPNLLRAKQEQFFAEYFASVRKSA 694

Query: 313 IIH 315
            I 
Sbjct: 695 AIE 697



 Score = 49.7 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 51/176 (28%), Gaps = 7/176 (3%)

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           + P+  +  F  + G L   +                   V   +      +   V+   
Sbjct: 411 VVPEFAEAVFSSRPGALTRPVQTKFGLHIIKVTGFDQNNLVCSEVVRLIRPSTETVESAR 470

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE----SDLHPQFQNLLKKSQNNTT 258
           + A   +++           + K+     G+                     K ++ + +
Sbjct: 471 RLATAFQMQAKDQGFDKSAISEKLPVAKTGEFGKHTPIAAVGFNDKINAFAFKAAEGDLS 530

Query: 259 NPYVTQKGVEYIAICDKRDLG---GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
               T+KG   + +  K D G    +  LK  ++A+    K E    + +  L + 
Sbjct: 531 EVIETEKGFYVMRLTGKNDTGYRLLDDDLKKRITAELVREKKEAALEKQLASLSAK 586


>gi|20808476|ref|NP_623647.1| parvulin-like peptidyl-prolyl isomerase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517095|gb|AAM25251.1| Parvulin-like peptidyl-prolyl isomerase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 264

 Score = 64.3 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/298 (12%), Positives = 83/298 (27%), Gaps = 43/298 (14%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK---LQKIN 69
           +K +    +L +F +  +    S         +++G  IT  ++ +  A LK    +  +
Sbjct: 1   MKKIVLLLILPVFALSILSGCGSKQ-----IASVHGIPITQAELEREKAFLKNDFAKMSD 55

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
            EL K A++ L  +   + E +K GI      +N  +      T L+ ED          
Sbjct: 56  EELTKTALENLKAKKAVEYEAQKEGIAVTDEELNKAWQNIKDKTKLTKEDLK-------- 107

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                        +  D + N +         E+    +  K+      +    +     
Sbjct: 108 -----------DILLSDKLFNKYTKDITVNPEEVEQFYETHKDYYTTVKVYEISVRD--- 153

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                    +       +            E+++      + G    +  S         
Sbjct: 154 ---------KDTADMVYQKLKSGEDFSKLFEQYSIDRISGNGGFMGEIPVSQ----KFFG 200

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
           +    +    P         I    ++ +     +K  +       K      + +K+
Sbjct: 201 VSLKPDTIYEPIPVNNEGYIILKTTEQIIKPFDEVKDGIELYLLNQKKLDFYHKKIKE 258


>gi|237736222|ref|ZP_04566703.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium mortiferum ATCC
           9817]
 gi|229421775|gb|EEO36822.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium mortiferum ATCC
           9817]
          Length = 575

 Score = 64.3 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/204 (10%), Positives = 60/204 (29%), Gaps = 2/204 (0%)

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
           A+    S    ++   K+G+  +         + +   +  +        + ++ A  +K
Sbjct: 270 AKKYYDSQIKIANEAKKRGVTADETLPVDYQFAQYQKGLFENIKSGIKPTDADLKAYFEK 329

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
                      +  +  +            K   +     L       K ++ +      
Sbjct: 330 NSLKYDTFPSAQADIAIVKIEPSSEDKVKAKAEAEEILKTLTSENFKEKAKELSQGPSAG 389

Query: 230 SIGKAQYLLESDLHPQFQNLLKKSQNN--TTNPYVTQKGVEYIAICDKRDLGGEIALKAY 287
           + G+  +  + D+   FQ  + + +       P  T  G   I I D+ D   +      
Sbjct: 390 NGGELGWFSKGDMVEPFQKAVFEGEVGKVYPTPVETVFGYHLILIEDRNDKESKAKASHI 449

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSN 311
           L            + + +++L++ 
Sbjct: 450 LIIPKVSEATINSKEKEIEELKNK 473



 Score = 39.7 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 73/225 (32%), Gaps = 9/225 (4%)

Query: 4   KVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK----- 58
           K    +  FI  +T  F+     +  +    S++ ++     ++G+ I+  D+ K     
Sbjct: 5   KFRKHIKPFIWFITILFIASSAMLAYMNMKSSYSRANVYAFKLDGDKISKIDVEKTKANL 64

Query: 59  ---RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
                  L  +     +E IA  ++I   L  +  E+  +   ++ VN    +   N+  
Sbjct: 65  TQGYSRYLGDKLDKDLIEVIAFDDIINRNLTLKIAEELNLKVPNSEVNAQ-YEAIENSVG 123

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
           + E F   L  QG     FK  +    +     +          E  +    +    +  
Sbjct: 124 NKEQFKRMLAVQGYTKKTFKNEIKNNMLIEKTFQKIQEGIVPTEEEIMNNYNENKNTLYS 183

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            + L       I   K Q       ++ +  +   ++     + +
Sbjct: 184 EKSLDEAKEDIIKSLKEQKGMEEYLKLLEKIKVSAKIEDISQEYQ 228


>gi|78357053|ref|YP_388502.1| peptidyl-prolyl cis-trans isomerase C [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219458|gb|ABB38807.1| peptidyl-prolyl cis-trans isomerase C [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 93

 Score = 64.3 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 9/81 (11%), Positives = 26/81 (32%), Gaps = 1/81 (1%)

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNN 256
            ++   + ++         +   + +        G      +  + P+F + +     N 
Sbjct: 13  TEEACLELKKRIEAGEAFADIAREHSRCPSGRRGGDLGKFRKGQMVPEFDEVVFSGDLNV 72

Query: 257 TTNPYVTQKGVEYIAICDKRD 277
              P  TQ G   + I ++ +
Sbjct: 73  VHGPVRTQFGFHLLEITERSE 93


>gi|56476342|ref|YP_157931.1| putative rotamase (prolyl cis-trans isomerase) [Aromatoleum
           aromaticum EbN1]
 gi|56312385|emb|CAI07030.1| putative Rotamase (prolyl cis-trans isomerase) [Aromatoleum
           aromaticum EbN1]
          Length = 250

 Score = 64.3 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/270 (8%), Positives = 60/270 (22%), Gaps = 26/270 (9%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              I+ E I  G+  + + L                 LI E ++ +    +         
Sbjct: 4   IVRIDDESIGSGEFVRILKLTGR-----------FDSLIDEIVRDRLTVHAAKKQGVAVS 52

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                + A           +      +             I   + +   M +    +  
Sbjct: 53  ADEIQERADQFRRVLGLHRAADMNHYLDARGVSLDEFEAFITDSLYQEKMMQRV-CSDQA 111

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +    Q          +   VL               +  +                 + 
Sbjct: 112 VEEYFQLNSPKFDSIEVSHIVL-----------ETEGQAKEMMSLLAEDPDSFTELAREH 160

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQ-NLLKKSQNNTTNPYVTQKG--VEYIAICDKRDLG 279
           +        G    ++   L  + +  +   +  +   P+    G   E   +  K    
Sbjct: 161 SIADTRDDGGFIGKVMRGSLKTEIEAKVFNAAPGDLLGPFAAPDGAFYEIFLVNAKNPAR 220

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
            +    A +        +     ++V ++R
Sbjct: 221 LDEETAAEVRRLLREGWLAARAQDHVIEMR 250


>gi|222839387|gb|EEE77724.1| predicted protein [Populus trichocarpa]
          Length = 235

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 77/277 (27%), Gaps = 48/277 (17%)

Query: 44  TTINGEVITDGDISKRIALLKLQKIN--GELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
             +NG+ +           ++        ELE    +E+I   +  QE  K  +      
Sbjct: 2   AVVNGKAVPKARAEALKQQIEQSGRPVTPELEGQIKEEVIAREIFMQEANKRSLANSEAY 61

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
                                               LA Q+I    +  DF  K    + 
Sbjct: 62  KQQL-------------------------------ELARQTILIRALFEDFQKKNPVTDA 90

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           E  A   K       +    + +    +++ +      K  K  E+            +K
Sbjct: 91  EAKAEYDKAVAANSGKEYKASHILVESEDRAKAIIAEIKAGKKFEDI----------AKK 140

Query: 222 FASKI-HDVSIGKAQYLLESDLHPQFQN--LLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
            +         G   +    +  P+F    +  +    T  P  TQ G   I + D R  
Sbjct: 141 ESKDPGSGARGGDLDWANPGNYVPEFSEALIKLEKGGMTQEPVKTQFGYHIIRLDDARQA 200

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             E+     +  Q      ++  A++ + LR  A I 
Sbjct: 201 --ELPKFEEVKPQIVQQLQQQKLAQFQESLREKAKIQ 235


>gi|152955225|emb|CAM59673.1| parvulin-type peptidyl prolyl cis/trans isomerase [Lotus japonicus]
          Length = 289

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/108 (12%), Positives = 36/108 (33%), Gaps = 1/108 (0%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN 255
              QK + D  +   +     +   +++        G   ++ +  + P+F+     +  
Sbjct: 93  EEDQKLLLDLLQRISKGEDLSDLAVEYSICPSKDEGGMLGWVRKGQMVPEFEEAAFGAPL 152

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALK-AYLSAQNTPTKIEKHEA 302
           N      TQ G   + +  +R+      ++ A L A+       +   
Sbjct: 153 NKVVRCKTQFGWHLLQVLSEREESLLQDIQPAELHAKFQDPNFSEEAQ 200


>gi|186470963|ref|YP_001862281.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phymatum STM815]
 gi|184197272|gb|ACC75235.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phymatum STM815]
          Length = 259

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 13/156 (8%), Positives = 45/156 (28%), Gaps = 7/156 (4%)

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQN---QGFVQKRIKDAEESRLRLPKDCNKLE 220
                  ++        R +LF++          +      +    ++     +     +
Sbjct: 88  YYAANPGRHAPGERVHARHILFAVTPGVDIEALRRLAEASLVDLRCDAVEHGERFARAAK 147

Query: 221 KFASKIHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAIC--DKR 276
           + ++     + G+  +   ++  P+    L              T+ G   + +   ++ 
Sbjct: 148 ELSNCPTGDAGGELGWFTAAECVPELARELFGLPYVGVLPRLVATRFGFHIVDVLARERA 207

Query: 277 DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
           +      ++A ++             +YV  L + A
Sbjct: 208 NTPPFETVRAAIAQTLRQHAFANALRQYVSLLAAQA 243


>gi|292493646|ref|YP_003529085.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
           halophilus Nc4]
 gi|291582241|gb|ADE16698.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
           halophilus Nc4]
          Length = 308

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/237 (8%), Positives = 57/237 (24%), Gaps = 14/237 (5%)

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
           E ++                   +  + A +       +        + +  Q +   ++
Sbjct: 51  EAKQWQGLTGDRERLRDLALDFHSNWVLAAEAEDLGLAEDPKVAAQLRAVRRQVLARALM 110

Query: 149 KNDFMLKYGNLEMEIP----ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV---QKR 201
           K          + ++           K+        R     + +            ++R
Sbjct: 111 KKVAGEAAVPSDRDLKALARERYSLHKDKLRTAEKRRVAHILLAEPADCPCDERPPARER 170

Query: 202 IKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKA-QYLLE-SDLHPQFQNLLK--KSQNN 256
                   L          + +         G+   ++     L   F++         +
Sbjct: 171 AAALRRELLAGGDFGAAARERSRDKGTAPDGGELPGWIKRDGRLVKPFEDAAFALTKPGD 230

Query: 257 TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            + P  T  GV  I + + +           +  +       +  A  +++ RS + 
Sbjct: 231 ISKPVETPFGVHLIKLLEVKPSR--QLSFEEVKGKLMRQVRAEVRASAMEQKRSQSY 285


>gi|254499150|ref|ZP_05111837.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254351629|gb|EET10477.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 624

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/267 (10%), Positives = 73/267 (27%), Gaps = 18/267 (6%)

Query: 52  TDGDISKRIALLKLQKINGELE---KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
           T       +    L             A+ + I   +K     +       +        
Sbjct: 141 TQLSFQNEVKQGMLLNQQRFAFIGSSFALPDEIERFVKLYMQNRDYDYVTISA------- 193

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
            AR    +     +  D        F     +   +  +  N+        + +I     
Sbjct: 194 -ARFEKDAHVSPEAIADYYKQHQKEFMAPEQVSLDYVLLSMNNIKKHIKISDDDIKRFYN 252

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
           + +N  +     +         +  ++  + +  K A+++   L KD  + EK  + + D
Sbjct: 253 ENQNNYLTPAQWQVAHILFATPEDVSKDELDQIQKKADDAYAALQKDPAQFEKLVTTLSD 312

Query: 229 VSI-----GKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEI- 282
             +     G   ++                    + P  T+ G E   +   + +  +  
Sbjct: 313 DKLSVAEKGALPWITAGQNDYDKILSNLTKPGEISAPEKTKHGYEIFKLIAYKPVTMKSL 372

Query: 283 -ALKAYLSAQNTPTKIEKHEAEYVKKL 308
             ++  +  Q      +   A  +++L
Sbjct: 373 AEVETTIKEQLLAEMAQTQYAHALEQL 399



 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 60/217 (27%), Gaps = 11/217 (5%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+   +   +  L    + I F +  +  Y     ++  + T+NGE +T+       
Sbjct: 1   MLQKLNERIQGVVAWLVVILIGITFTLFGVDYYFQSHQTTNSKVTVNGEPLTEQAFEINY 60

Query: 61  ALLKLQK--------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF---FVQH 109
              +  +           +L+   + +++   +  Q    +G     N  N       Q 
Sbjct: 61  RRARGMQDIAQMTAEDEKKLQNQVLDQMVTNEVMVQAAHTNGFNVSLNQANAAILNIPQF 120

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
             +   S+E +   L         F+  +    +            +   +      K  
Sbjct: 121 QEDGHFSSEKYQQALSAALFTQLSFQNEVKQGMLLNQQRFAFIGSSFALPDEIERFVKLY 180

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           M+N       I    F    +          +    E
Sbjct: 181 MQNRDYDYVTISAARFEKDAHVSPEAIADYYKQHQKE 217


>gi|134277039|ref|ZP_01763754.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           305]
 gi|134250689|gb|EBA50768.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
           305]
          Length = 644

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/303 (7%), Positives = 69/303 (22%), Gaps = 29/303 (9%)

Query: 26  CIVPIVSYKSWAMSSRIRT---TINGEVITDGDISKRIALLKLQ-KINGELEKIAVQELI 81
                 + +   +S  +       +G      D  +   +L +Q     + ++     L 
Sbjct: 107 LSASDGAVRQTLLSDPVIASLKKADG----SFDAERYTQMLAMQGMTPDQYQERVRYNLA 162

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ---------GIGDN 132
           ++ +    +  +              +  R         + +  K              +
Sbjct: 163 LQQIPASIVSSAFTPKSVARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAH 222

Query: 133 HFKQYLAIQSIWPDVV--KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                    +    +V  +          +++I             +  +R     I   
Sbjct: 223 KQAFATRETATIQYLVYSQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAA 282

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-----SKIHDVSIGKAQYLLESDLHPQ 245
           K  +          AE+    +    ++  + A             G   ++        
Sbjct: 283 KDASAAEKAAAKAKAEQLLAEVKAHPDRFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGG 342

Query: 246 FQNLLKK---SQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKH 300
                      ++  +       G   +   D +    +    +K  ++   T     K 
Sbjct: 343 AAFDDAAFALKKDEISGVVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLTQQFAAKA 402

Query: 301 EAE 303
            A+
Sbjct: 403 FAD 405



 Score = 51.6 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/236 (8%), Positives = 67/236 (28%), Gaps = 18/236 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIF---CIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
           +     +  +L+  + +LI+     IV I  ++ +   S     +NG  IT  +    + 
Sbjct: 1   MLDFFRNHQRLMMFFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGTLR 60

Query: 62  LLKLQKIN-------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF-- 106
               Q                 E  +  +  LI +     E ++  ++     V      
Sbjct: 61  QQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTLLS 120

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
                +   +   F +    Q +           + +  ++          +      + 
Sbjct: 121 DPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKSV 180

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
            +++  +  ++  ++ ++    D   + Q    +     +  +           ++
Sbjct: 181 ARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQY 236


>gi|90407687|ref|ZP_01215866.1| peptidyl-prolyl cis-trans isomerase C [Psychromonas sp. CNPT3]
 gi|90311156|gb|EAS39262.1| peptidyl-prolyl cis-trans isomerase C [Psychromonas sp. CNPT3]
          Length = 93

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 1/79 (1%)

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTT 258
           +  +D ++         +  +K ++     + G         + P+F + +         
Sbjct: 15  ELCEDLKKQIEAGSDFTSIAQKHSTCPSGATGGDLGQFGPGQMVPEFDKVVFSAPIGEVQ 74

Query: 259 NPYVTQKGVEYIAICDKRD 277
            P  TQ G   + + ++ D
Sbjct: 75  GPVKTQFGYHLLEVTERDD 93


>gi|78357081|ref|YP_388530.1| hypothetical protein Dde_2038 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219486|gb|ABB38835.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 335

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/309 (13%), Positives = 88/309 (28%), Gaps = 26/309 (8%)

Query: 18  TYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN------GE 71
              V+    I+     K       +  T+NG  +   ++  R  L  L           +
Sbjct: 5   IAAVVAACVIMAAAGCKDDVEQQGVVATVNGSPVYLQELEARYDLDHLSWSGAMVPSVDQ 64

Query: 72  LEKI---AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
           L K    A+  LIV+ L +Q++EKSG+      V     +   +      +F   L +  
Sbjct: 65  LRKDYGSALAGLIVQRLVEQDLEKSGLDVTDEEVLKAEEEVRAD--YPPGEFEKVLVEDY 122

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
           I    ++  L                       E     +   +             +  
Sbjct: 123 IDLATWRYMLRQHLQREKFRSEILRPAISLSFEEAEDYYKAHLSDF-----YLPERINFL 177

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
                ++G V+K      E + R     +  +    ++                    Q 
Sbjct: 178 YISGPDRGTVEKARDLLTEGKDRAEVLGSFSQLSVRELKMREDRIHGTWK--------QL 229

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY--LSAQNTPTKIEKHEAEYVK 306
           L K      +     + G E   +            +AY  +       K+++  A++++
Sbjct: 230 LAKLEDGQASPVLNGEAGYEAFIMLGLLPEKVLGPSQAYPIIERLLIEEKMQQVYAQWLE 289

Query: 307 KLRSNAIIH 315
           K   +A + 
Sbjct: 290 KRLESAEVK 298


>gi|260591262|ref|ZP_05856720.1| putative peptidyl-prolyl cis-trans isomerase [Prevotella veroralis
           F0319]
 gi|260537127|gb|EEX19744.1| putative peptidyl-prolyl cis-trans isomerase [Prevotella veroralis
           F0319]
          Length = 474

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/281 (9%), Positives = 74/281 (26%), Gaps = 36/281 (12%)

Query: 36  WAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGI 95
           +  S     TING+ ++  +                 E +  ++ I + +      K  +
Sbjct: 18  FGQSDPTIMTINGQPVSRSEFE-------YSYNKNNAEGVIDKKSIADYVDLFINYKLKV 70

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
               +          +      +                      Q     +        
Sbjct: 71  QAALDARLDTLSSFKQEFLTYRDQ---------------------QIRPSFLTN----SD 105

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR-LPK 214
                 +I    ++        +    +L  +     + +    K + D+  + L+    
Sbjct: 106 IEKAARDIYQETKESIEANGGLWCCAHILVGLNQRATKEEELKAKVLADSIYNALQHGAN 165

Query: 215 DCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAI 272
                +K+++      + G+   L +     +F++ +        + P ++  G   I +
Sbjct: 166 FGELAKKYSADRESAQNGGELPLLQKGQTVQEFEHAMLALKPGEMSKPTLSPYGYHIIKM 225

Query: 273 CDKRDLGGEIALKAYLSAQNTPT-KIEKHEAEYVKKLRSNA 312
                L    +L A +          ++   + +  L   A
Sbjct: 226 IAHEGLAPYDSLHARILQFIEMRGLRDQIVDKKLDSLVQQA 266


>gi|21672423|ref|NP_660490.1| survival protein SurA precursor [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25091307|sp|Q8KA01|SURA_BUCAP RecName: Full=Chaperone surA homolog; Flags: Precursor
 gi|21623033|gb|AAM67701.1| survival protein SurA precursor [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 432

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 47/158 (29%), Gaps = 2/158 (1%)

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           +I   + + K     E+ I+  L          Q               +   D    + 
Sbjct: 273 KINKIENENKENLTTEFHIQHCLIRPSVILDDKQAKNSIYYIYNNIKNKKYSFDYAVQKL 332

Query: 222 FASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDL-G 279
                     G   ++        F+N      +N  + P  +  G   I + D R +  
Sbjct: 333 SHDVYSSHKKGDLGWISTDFFSNDFRNFLTDLRKNEISKPIKSNFGWHIIKLLDIRQVDK 392

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
                K  +       KI+K    ++++L+ ++ I  +
Sbjct: 393 SNRIDKNLVYRFLLEKKIKKERYNWIRQLKKSSYIKIF 430



 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/283 (12%), Positives = 85/283 (30%), Gaps = 15/283 (5%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK-------RIALLKLQK 67
            +  + +L +F     ++Y       +I   +N ++I + D+++           +K+  
Sbjct: 2   KVYFFLILYVFLSFFSITYSKELEIDKIIAIVNNQIILNSDVNQVLFSLKEEDQRVKIPL 61

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS---FL 124
               L    +++LI ETL  +E +K  I    + VN    ++A    ++ E+        
Sbjct: 62  KINFLRNKIIKKLITETLILEEAKKFNIVVTDDQVNNVLSKYALKKNITIEELKRNILMN 121

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           +       +        S+   ++++  +    ++  +           T  E     + 
Sbjct: 122 NTNTSFSYNDYFNKIKNSLKVKIIQDYVLHNRVHISEKEVDLFLNKLINTQNELKKIDIN 181

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
                   +      K  K   +   +  K       +       +       + S    
Sbjct: 182 CIFLPFIKEKNKIFIKNTKILADHFAKKIKKDASFNYYYEYFKKNNNIFLSKEIRSKSLK 241

Query: 245 QFQNLLKK-----SQNNTTNPYVTQKGVEYIAICDKRDLGGEI 282
             + +         +N    P +  KG   + I    +   E 
Sbjct: 242 YLKKIFLNKLKIIKKNQILGPILGLKGFYILKINKIENENKEN 284


>gi|89100502|ref|ZP_01173363.1| YacD [Bacillus sp. NRRL B-14911]
 gi|89084768|gb|EAR63908.1| YacD [Bacillus sp. NRRL B-14911]
          Length = 296

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 76/291 (26%), Gaps = 35/291 (12%)

Query: 15  LLTTYFV--LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           ++ + FV  +I   ++ I     +A S      +  + IT  +    +            
Sbjct: 9   IIASLFVLNIIFILLLTIRPAVLFAGSGETVAEVGKDKITREEWLNEM--------EQRY 60

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            K  + +LI + +     EK  +    + V             +                
Sbjct: 61  GKEVLNDLIDQKVIGAMAEKYDVEVSKDAVERELTLVKTMYQGNRLQQL----------- 109

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             +     Q  +  +++          E E+     + K++             +   K 
Sbjct: 110 -DESKWKEQIKYSLLLEELLTRDVVVTEEEMKDYYDQNKSLFQVPDSYHISQIVVKTKKE 168

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL---HPQFQNL 249
             Q   +                   +E+   +      G+  ++ E D           
Sbjct: 169 AEQTIKE--------LENGSSFPVLAMERSIDEFTANQGGETGFISEEDERFSQDFIDEA 220

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIE 298
            K  +   + P   + G   I + +  D        +K  +  Q    +++
Sbjct: 221 AKLKEGEWSEPVEVEDGYAVILLHEHLDGRNYAFKDVKNQIRRQVALEQMD 271


>gi|51594518|ref|YP_068709.1| peptidyl-prolyl cis-trans isomerase [Yersinia pseudotuberculosis IP
           32953]
 gi|108806143|ref|YP_650059.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis Antiqua]
 gi|108810256|ref|YP_646023.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis Nepal516]
 gi|145600740|ref|YP_001164816.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis Pestoides F]
 gi|153947180|ref|YP_001399170.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pseudotuberculosis
           IP 31758]
 gi|153997073|ref|ZP_02022206.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis CA88-4125]
 gi|162419617|ref|YP_001605102.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis Angola]
 gi|165926365|ref|ZP_02222197.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939696|ref|ZP_02228239.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009691|ref|ZP_02230589.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213502|ref|ZP_02239537.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167402058|ref|ZP_02307537.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421055|ref|ZP_02312808.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425941|ref|ZP_02317694.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468459|ref|ZP_02333163.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis FV-1]
 gi|218930874|ref|YP_002348749.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis CO92]
 gi|229837207|ref|ZP_04457372.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Yersinia pestis
           Pestoides A]
 gi|229839569|ref|ZP_04459728.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229900131|ref|ZP_04515268.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229900422|ref|ZP_04515551.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Yersinia pestis
           Nepal516]
 gi|270488780|ref|ZP_06205854.1| PPIC-type PPIASE domain protein [Yersinia pestis KIM D27]
 gi|51587800|emb|CAH19402.1| peptidyl-prolyl cis-trans isomerase [Yersinia pseudotuberculosis IP
           32953]
 gi|108773904|gb|ABG16423.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis Nepal516]
 gi|108778056|gb|ABG12114.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis Antiqua]
 gi|115349485|emb|CAL22459.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis CO92]
 gi|145212436|gb|ABP41843.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis Pestoides F]
 gi|149289379|gb|EDM39457.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis CA88-4125]
 gi|152958675|gb|ABS46136.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pseudotuberculosis
           IP 31758]
 gi|162352432|gb|ABX86380.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis Angola]
 gi|165912386|gb|EDR31020.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921889|gb|EDR39086.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991613|gb|EDR43914.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205175|gb|EDR49655.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166961184|gb|EDR57205.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048532|gb|EDR59940.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055089|gb|EDR64888.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229682441|gb|EEO78528.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Yersinia pestis
           Nepal516]
 gi|229686911|gb|EEO78990.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229695935|gb|EEO85982.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229706150|gb|EEO92159.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Yersinia pestis
           Pestoides A]
 gi|270337284|gb|EFA48061.1| PPIC-type PPIASE domain protein [Yersinia pestis KIM D27]
 gi|320013526|gb|ADV97097.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 93

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 1/76 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           +K+  D               +KF++     + G      + D+ P F + +        
Sbjct: 15  EKQANDILAQLNNGANFQELAKKFSNCPSKRNGGDLGEFNKGDMVPAFDKAVFSCELLQP 74

Query: 258 TNPYVTQKGVEYIAIC 273
             P  TQ G   I + 
Sbjct: 75  YGPVKTQFGYHIIKVL 90


>gi|145346556|ref|XP_001417752.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577980|gb|ABO96045.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 230

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 46/136 (33%), Gaps = 7/136 (5%)

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKIHDVSIGKAQYL 237
               +L    D   +      + +   ++S   L         +++        G   Y 
Sbjct: 61  HASHILCGTGDAGKRKCQDYAEMLTPYQDSAHTLERAFAELARRYSECPTGSDGGDLGYF 120

Query: 238 LESDLHPQFQNLLKKSQ---NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS-AQNT 293
              ++   F++++  S+   +    P  T+ G   + +  +     +   +A L   +  
Sbjct: 121 PRGEMSRDFESVVFDSKTPLDAVVGPVETRNGWHVMLVHHRHLADEDAKERARLKSEEMK 180

Query: 294 PTKIE--KHEAEYVKK 307
             ++E  + + EY ++
Sbjct: 181 RERLERAEKQKEYQEE 196


>gi|213970614|ref|ZP_03398740.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           tomato T1]
 gi|301386322|ref|ZP_07234740.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           tomato Max13]
 gi|302060903|ref|ZP_07252444.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           tomato K40]
 gi|302133966|ref|ZP_07259956.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213924611|gb|EEB58180.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           tomato T1]
 gi|331015428|gb|EGH95484.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 93

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 25/80 (31%), Gaps = 1/80 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNT 257
           +++  + +             +  +S       G         +  +F  ++  +  N  
Sbjct: 14  EEKCNELKTQIEGGADFAEVAKANSSCPSSRQGGDLGSFGPGQMVKEFDTVVFSAPVNTV 73

Query: 258 TNPYVTQKGVEYIAICDKRD 277
             P  TQ G   + +  ++D
Sbjct: 74  QGPVKTQFGYHLLEVTSRQD 93


>gi|330808744|ref|YP_004353206.1| peptidylprolyl isomerase (peptidyl-prolyl cis-trans isomerase)
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327376852|gb|AEA68202.1| peptidylprolyl isomerase (peptidyl-prolyl cis-trans isomerase)
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 93

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 9/81 (11%), Positives = 24/81 (29%), Gaps = 1/81 (1%)

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT 257
            + +  + +             +  +S       G         +  +F  ++  +  N 
Sbjct: 13  TEDKCNELKAQIEAGADFAEVAKANSSCPSSRQGGDLGSFGPGQMVKEFDTVVFSAPINV 72

Query: 258 T-NPYVTQKGVEYIAICDKRD 277
              P  TQ G   + +  ++D
Sbjct: 73  VQGPVKTQFGYHLLEVTSRQD 93


>gi|325294382|ref|YP_004280896.1| hypothetical protein Dester_0180 [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064830|gb|ADY72837.1| hypothetical protein Dester_0180 [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 440

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/339 (9%), Positives = 86/339 (25%), Gaps = 31/339 (9%)

Query: 1   MTSKVFTSLSDF---IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDIS 57
           M SK+  ++  F   + ++   FV  IF +    S    + S     T+NGE I   + +
Sbjct: 1   MLSKIRKNMRAFSLPLWIVAASFVGTIFLVWGKGSLTGPSGSE--VATVNGEPIDLIEFN 58

Query: 58  KRI------------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           +                 +    + E++  A+Q LI   L  +E +K GI      V   
Sbjct: 59  REYNQLTNQLQQQFGENYRKLFPDKEIKIAALQRLINRKLVLEEAKKEGIQVSDWAVAKR 118

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
                       +       +    +    +    +     +++    +      +    
Sbjct: 119 IRSFP-FLQKDGKFSEELYKEFLKANRLSPKVFEDKIREDLLIEKIMAVIDKAPSVTTFE 177

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
            +   +    +      +          ++  +++  ++              L K    
Sbjct: 178 LQNLYRKTFGKREFKYKLFLKKDYKPSISEKELREFYRENISQFKEKTGKKYFLIKIPKS 237

Query: 226 IHDVSI-----GKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQK--------GVEYIAI 272
             D             L + +    F       +   +  +  +                
Sbjct: 238 QKDSEGLARKVYNLAKLGKVEKLNDFHPQQVNDKKLISEKFKDKNFGFYSDESNYYVFFK 297

Query: 273 CDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            +         +K  +       K  +   +  ++    
Sbjct: 298 KEGEKAKPFETVKKDIEKTLKEKKAVELAKKSAEEFLKK 336


>gi|312961354|ref|ZP_07775859.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           fluorescens WH6]
 gi|311285012|gb|EFQ63588.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           fluorescens WH6]
          Length = 93

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 9/81 (11%), Positives = 24/81 (29%), Gaps = 1/81 (1%)

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NN 256
            + +  + +             +  +S       G         +  +F  ++  +  N 
Sbjct: 13  TEDKCNELKAQIEGGADFAEVAKANSSCPSSRQGGDLGSFGPGQMVKEFDTVVFSAPVNT 72

Query: 257 TTNPYVTQKGVEYIAICDKRD 277
              P  TQ G   + +  ++D
Sbjct: 73  VQGPVKTQFGYHLLEVTSRQD 93


>gi|255547349|ref|XP_002514732.1| rotamase, putative [Ricinus communis]
 gi|223546336|gb|EEF47838.1| rotamase, putative [Ricinus communis]
          Length = 145

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 9/103 (8%), Positives = 30/103 (29%), Gaps = 2/103 (1%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
                R +L        +    + +    +   ++   +      +++        G   
Sbjct: 44  TYVKARHILCEKQGKINEAYKKL-QDGWLSNGDKVPPAEFAKLAAEYSECPSGKKGGDLG 102

Query: 236 YLLESDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAICDKRD 277
           +     +   FQ +   +    T+ P+ +  G   I    +++
Sbjct: 103 WFPRGKMAGPFQEVAFNTVVGATSAPFKSTHGYHIILCEGRKN 145


>gi|325523743|gb|EGD02000.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           TJI49]
          Length = 261

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 47/172 (27%), Gaps = 5/172 (2%)

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
           + +          +      +      R  ++                 +++R + A   
Sbjct: 77  ERELTHLPEPDRADCERYYAQHPARFRRNDIVYASHVLFAVTDRVPLAPLRQRAEAALAD 136

Query: 209 RLRLPKDCNK-LEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ--NNTTNPYVTQK 265
            +  P          ++       G    LL  D  P+F+  L  S           T+ 
Sbjct: 137 VVAAPDTFEAVARASSNCPSAQLGGSLGQLLRGDTVPEFEAALFDSDGIGVLPKLVNTRF 196

Query: 266 GVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           G   + I  +   D        A ++A  +    E+   +YV  L   A + 
Sbjct: 197 GFHIVRIERRVPGDTVPFDEAAAQIAAHLSARVRERAMRQYVAILAGKAHLE 248


>gi|307133009|ref|YP_003885025.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Dickeya
           dadantii 3937]
 gi|306530538|gb|ADN00469.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Dickeya
           dadantii 3937]
          Length = 93

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +++  D      +        +K ++     + G      + D+ P F + +      
Sbjct: 13  DTEQQATDILAQLEKGADFQQLAKKHSTCPSKHNGGDLGEFRKGDMVPDFDKAVFSCELL 72

Query: 256 NTTNPYVTQKGVEYIAIC 273
               P  TQ G   I + 
Sbjct: 73  KPFGPVKTQFGYHIIKVL 90


>gi|327402946|ref|YP_004343784.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fluviicola taffensis
           DSM 16823]
 gi|327318454|gb|AEA42946.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fluviicola taffensis
           DSM 16823]
          Length = 459

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/276 (8%), Positives = 76/276 (27%), Gaps = 19/276 (6%)

Query: 19  YFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--INGELEKIA 76
             +  +F +     +    M  ++   +   ++   ++  +   LK          + + 
Sbjct: 5   LLISFLFTLAFTNVFAQPKMIDKVIGQVGDNIVLYSELEGQKQSLKQNSAVPESIDQCVL 64

Query: 77  VQELIVETLKKQEIEKSGITFD-------SNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
           +++++   L   + E   I                      +N      +  +     G 
Sbjct: 65  LEQMLYNFLLVNQAELDSIQISDEQVDAEMENRLRVIENQMKNVKDDKGNPITIESFYGK 124

Query: 130 GDNHFKQYLAIQS---IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR---TV 183
             +  K+   +     +    V+           ME+      +   ++     +     
Sbjct: 125 TKSQIKEEFRVTIKKRLQGQEVERGITADLDVSPMEVENFFNSIPKDSLPYINSQLSFQQ 184

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL--LESD 241
           +   P     ++   QK+I +  +S +           F++     S             
Sbjct: 185 IAIFPKITKSDKEIAQKKIVEIRKSVVSGKMTMC-AAAFSNSDDPGSAKNCGRYEATRGM 243

Query: 242 LHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR 276
           +   F+           +  + T+ G  ++ + D++
Sbjct: 244 MARTFEATAYSLKVGEISEVFETEFGFHFMQLIDRK 279


>gi|86749346|ref|YP_485842.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris HaA2]
 gi|86572374|gb|ABD06931.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris HaA2]
          Length = 350

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/263 (10%), Positives = 75/263 (28%), Gaps = 27/263 (10%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            +  I   +    I+  +I   +A L  +     L +                       
Sbjct: 76  KADDIIARVGSTNISAEEIRGYVAALGER-DLAALRQ----------------------- 111

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
           D N ++        N  +  E  +   D+Q        +     ++   +       +  
Sbjct: 112 DPNLLSQAVRMMLANRLVMQEIAAKKWDQQPSVAEKLDRVRESAAVELYLQTVSTPPERF 171

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E ++       +   +           +   K  ++    K  K  E+ + +L     
Sbjct: 172 PSEDDLQRVYDANRAALLMPRQFELAQIFVALPKDADKAAEDKAKKSVEDIQRKLKAPGV 231

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR 276
                A++  + + G   ++ ES + P+ +  + + S+N  ++P     G  ++ + D +
Sbjct: 232 DFAAVAAEAGNANGGALGWVAESQIRPEIRAKVMELSKNAVSDPIKLDDGWHFVKVLDTK 291

Query: 277 DLGGEIALKAYLSAQNTPTKIEK 299
                      +          +
Sbjct: 292 --APYTRTLPEVRDGLIAQIRTE 312


>gi|28870204|ref|NP_792823.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28853450|gb|AAO56518.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 93

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 25/80 (31%), Gaps = 1/80 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNT 257
           +++  + +             +  +S       G         +  +F  ++  +  N  
Sbjct: 14  EEKCDELKTQIEGGADFAEVAKANSSCPSSRQGGDLGSFGPGQMVKEFDTVVFSAPVNTV 73

Query: 258 TNPYVTQKGVEYIAICDKRD 277
             P  TQ G   + +  ++D
Sbjct: 74  QGPVKTQFGYHLLEVTSRQD 93


>gi|330875454|gb|EGH09603.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 93

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 24/80 (30%), Gaps = 1/80 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNT 257
           + +  + +             +  +S       G         +  +F  ++  +  N  
Sbjct: 14  EDKCNELKAQIEGGADFAEVAKANSSCPSSRQGGDLGSFGPGQMVKEFDTVVFSAPVNTV 73

Query: 258 TNPYVTQKGVEYIAICDKRD 277
             P  TQ G   + +  ++D
Sbjct: 74  QGPVKTQFGYHLLEVTSRQD 93


>gi|313683491|ref|YP_004061229.1| hypothetical protein Sulku_2369 [Sulfuricurvum kujiense DSM 16994]
 gi|313156351|gb|ADR35029.1| hypothetical protein Sulku_2369 [Sulfuricurvum kujiense DSM 16994]
          Length = 277

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 83/296 (28%), Gaps = 29/296 (9%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           +I     + +Y   A    +   +    IT  +I + +        +G     +   LI 
Sbjct: 3   LITLSTLLAAYLWSAPIGGVAVLVKNTPITLFEIQEEMK------QSGTSANQSADTLIR 56

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           + L++ E ++  IT  S  +N    + A    LS E F + +           +    +S
Sbjct: 57  KKLEQLEAQEKKITVSSAEINEELNRMAVQNKLSMEQFLNAMQTVRGLSEKDLRARVEES 116

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           I    + +               N+    ++          + +   +  +         
Sbjct: 117 IKGQKLYSSIAFSKMGQPTAEEENEYYQLHMDEFSRPESFEVTTYVSSSQEALTAKIADP 176

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYV 262
               ES     +     +                          Q L K    + +    
Sbjct: 177 MRHIESISSKDETIPYAKIN--------------------PQLAQLLNKIPNGSFSPVLP 216

Query: 263 TQ-KGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
               G     + DK ++  E    ++  ++      K  +   +Y  +LR +A I 
Sbjct: 217 NGKNGFMSFYMRDKLNVVTENLDTVRPQIANAILGEKRNQVLNDYFTRLRLSADIK 272


>gi|297733955|emb|CBI15202.3| unnamed protein product [Vitis vinifera]
          Length = 175

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 9/103 (8%), Positives = 31/103 (30%), Gaps = 2/103 (1%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
                R +L        +    + +    +   ++   +      +++        G   
Sbjct: 74  TYVKARHILCEKQGKINEAYKKL-QDGWLSNGDKVPPAEFAKLAAEYSECPSGKKGGDLG 132

Query: 236 YLLESDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAICDKRD 277
           +     +   FQ++   +    T+ P+ +  G   I    +++
Sbjct: 133 WFPRGKMAGPFQDVAFSTVIGATSAPFKSTHGYHIILCEGRKN 175


>gi|240949547|ref|ZP_04753887.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus minor NM305]
 gi|240296120|gb|EER46781.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus minor NM305]
          Length = 624

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/245 (7%), Positives = 60/245 (24%), Gaps = 6/245 (2%)

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
           I  + +I   +++  I  S             +   R+  L+    +     Q +     
Sbjct: 154 IVREGMIFSQIEEGIINTSFDLPAQQEALAKLLFQKRDVRLATYSLADEAKNQTVSPEEL 213

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
           + +           +   +        ++    Q         Y      F         
Sbjct: 214 QSFYEAHKKQLLTPETFTVEYLVLTPKDVEKRIQITDEQIATYYDKNKAQFVTKGEANLA 273

Query: 195 QGFVQKRIKDAE--ESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLK 251
              V    +     +            ++ ++  +     G   +         F+N   
Sbjct: 274 HIQVANEAEANAIAQQLNNGADFATLAKEKSTDKLSAAQGGNLGWTKAGTFPQAFENAAS 333

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
           +      + P         I + D++  ++     +K  ++       +    +   + +
Sbjct: 334 QLQVGQVSQPIKIDNAYHIIKVIDRKAENIIPLAQVKDKITETIRKELLASEYSTVARDM 393

Query: 309 RSNAI 313
            ++A 
Sbjct: 394 ANSAF 398



 Score = 40.8 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 67/238 (28%), Gaps = 20/238 (8%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVI---TDGDIS 57
           M  K     +         F L+    V          +      +NGE I   T  D  
Sbjct: 1   MIEKWHDRTNSL--GFKIIFTLVSLSFVLGGIGSGLVATDDSAVKVNGEGISQRTFTDAK 58

Query: 58  KRIALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
            R   +   +  G             E  +  +  LI + L +Q  +   +    + +  
Sbjct: 59  NRQQNILYSQKGGEAWDLLDKPEYAREFNQSVLNSLINDELLRQYAKSLKLDVGVDQIKS 118

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
             V  A        D   +             Y A   +   ++ +       N   ++P
Sbjct: 119 EIVHDANFQQNGKFDNKLYQQTLRNAGLTTDGYAA--IVREGMIFSQIEEGIINTSFDLP 176

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           A ++ +  +  ++  +R   +S+ D         ++     E  + +L        ++
Sbjct: 177 AQQEALAKLLFQKRDVRLATYSLADEAKNQTVSPEELQSFYEAHKKQLLTPETFTVEY 234


>gi|225457367|ref|XP_002284794.1| PREDICTED: similar to peptidyl-prolyl cis-trans isomerase PPIC-type
           family protein isoform 1 [Vitis vinifera]
          Length = 144

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 9/103 (8%), Positives = 31/103 (30%), Gaps = 2/103 (1%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
                R +L        +    + +    +   ++   +      +++        G   
Sbjct: 43  TYVKARHILCEKQGKINEAYKKL-QDGWLSNGDKVPPAEFAKLAAEYSECPSGKKGGDLG 101

Query: 236 YLLESDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAICDKRD 277
           +     +   FQ++   +    T+ P+ +  G   I    +++
Sbjct: 102 WFPRGKMAGPFQDVAFSTVIGATSAPFKSTHGYHIILCEGRKN 144


>gi|225457365|ref|XP_002284796.1| PREDICTED: similar to peptidyl-prolyl cis-trans isomerase PPIC-type
           family protein isoform 2 [Vitis vinifera]
          Length = 158

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 9/103 (8%), Positives = 31/103 (30%), Gaps = 2/103 (1%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
                R +L        +    + +    +   ++   +      +++        G   
Sbjct: 57  TYVKARHILCEKQGKINEAYKKL-QDGWLSNGDKVPPAEFAKLAAEYSECPSGKKGGDLG 115

Query: 236 YLLESDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAICDKRD 277
           +     +   FQ++   +    T+ P+ +  G   I    +++
Sbjct: 116 WFPRGKMAGPFQDVAFSTVIGATSAPFKSTHGYHIILCEGRKN 158


>gi|254448800|ref|ZP_05062257.1| peptidyl-prolyl cis-trans isomerase D, putative [gamma
           proteobacterium HTCC5015]
 gi|198261641|gb|EDY85929.1| peptidyl-prolyl cis-trans isomerase D, putative [gamma
           proteobacterium HTCC5015]
          Length = 643

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 13/149 (8%), Positives = 44/149 (29%), Gaps = 6/149 (4%)

Query: 171 KNITVREYLIRTVLFSIPDNKLQN-QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HD 228
           +  +  E     +LF+   +  ++ +  V+   +                ++ +      
Sbjct: 262 RYTSQEERSASHILFAFDSDADEDARAAVRSEAEQVLTQINEGGDFSALAKEHSDDPGSA 321

Query: 229 VSIGKAQYLLESDLHPQFQN--LLKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIAL 284
              G    + +  + P+F+        +   ++   +Q G   I + +           +
Sbjct: 322 EQGGSLGVVQKGVMVPEFEQAVFNLPEEGAVSDLVESQFGYHIIRLDEYTPAEAQPFDEI 381

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            A +  +    K        + ++ + A 
Sbjct: 382 SAKIRQELLDNKARLRYDSDIDEMSNLAF 410



 Score = 44.7 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 74/234 (31%), Gaps = 15/234 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +   ++  + L+     L +F +VP++      M      T++GE ++    ++R+
Sbjct: 1   MLLAIREKVTGAVALVIIA-ALGLFMVVPMLYDYVAGMGDNSAITVDGESVSIQQYNQRL 59

Query: 61  ALLKLQKIN------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
           +  + +                 L K    + I + L++Q     G       +     +
Sbjct: 60  SQNRQRLTQAFGGELPESFGDQLLAKRTTDQFIQQLLQEQATLNDGYAISDEDLVRVIQE 119

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
             +       D  ++  +          Y   Q++    V+  F           P   +
Sbjct: 120 APQFQTDGQFDPEAYKRQLRSIGYSPALY--EQTMTKRFVQGQFQEGITQTAFVAPGQLE 177

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +M  +  +E  I  + FS    +   +    +     E+ R +         ++
Sbjct: 178 QMAALMHQERDIEYIAFSGEAFRSDIELSDAEIEAYFEDHREQFMHPEKVSVEY 231



 Score = 37.7 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 3/51 (5%)

Query: 269 YIAICDKRD---LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + + DKR         + +  +  Q   +K     A  + +LR  A I  
Sbjct: 583 VVKLLDKRPGQWEQLTQSEQEQIKQQLLASKGGMDYAAVLNQLREEADIDI 633


>gi|55980321|ref|YP_143618.1| peptidyl-prolyl cis-trans isomerase [Thermus thermophilus HB8]
 gi|55771734|dbj|BAD70175.1| peptidyl-prolyl cis-trans isomerse, PpiC family [Thermus
           thermophilus HB8]
          Length = 608

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/303 (9%), Positives = 67/303 (22%), Gaps = 26/303 (8%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISK-RIALLKLQKINGELEKIAVQELIVETLKKQ 88
                +     +    +NG+ + + D+ + +            L K  V    +E +   
Sbjct: 28  FTPQAAQQTRGKPVLWVNGKALYELDLLRLQGNDPLYAASPEGLLKTLVDTYFLEQVILT 87

Query: 89  EIEKS---GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
           E  K     +   S  V     +     GL  +        Q    +   +      +  
Sbjct: 88  EALKQDAARVRVSSAEVRQEVNRIREQFGLKDKAAYEQFLNQVGYTDAQLRAEVKTQLQI 147

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
                         E E+    +  K     E  ++     + D  L  +          
Sbjct: 148 QKRLEQIRSGAKPTEEEVRFYYEVFKENYRTEPRVKARQIVVDDKALAEELA-------- 199

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF----------QNLLKKSQN 255
                          + +  +     G                        + +      
Sbjct: 200 -AKAKAGEDFAALARQHSK-VGAEQGGALGAGPGEAEPKPVTQVVFPTEVGEAVFALKGP 257

Query: 256 NTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
               P         + + +           +K  ++      K       Y+++LR  A 
Sbjct: 258 GVVGPIAAGGRYYIVKVEEYLPSTLPAFEEVKDRVAQDAERAKGNGVLEAYLEELRKKAQ 317

Query: 314 IHY 316
           + +
Sbjct: 318 VRF 320



 Score = 59.7 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/294 (9%), Positives = 73/294 (24%), Gaps = 55/294 (18%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKS 93
             +A  +     +N + I   ++   +  +   +    L +  + EL V+          
Sbjct: 324 NPYAYQNPPVAKVNEKEILLSEV---LQPVFSNQQTVALVQQGLGELAVQFFL------- 373

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
             T ++       V+ AR +G                          +     +      
Sbjct: 374 PQTLENLIDRELLVEAARKSG------------------KPFIGSKAEIAEAYLRYE--T 413

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                 E E  A   +   +       + +  +            + + K    + LR  
Sbjct: 414 RDVTASEEEARAFYSENPALFTVPASAKVIGVNF---------KEEAQAKAFRAAALRGG 464

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--------QNLLKKSQNNTTNPYVTQK 265
                 +       + ++     +  + L            +   +      +     + 
Sbjct: 465 DLEALAKA-----QEGTVTDYGTVNPNQLPAVLDRLVFKITETFPQGPLGEVSEVIKMED 519

Query: 266 G-VEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G    + I D++  +L G   +           K  +     ++ LR  A I  
Sbjct: 520 GSYTVLLISDRKAEELKGFAQVAEEARQGAVNRKRSEKAQALIQALREEAKIEN 573


>gi|309378643|emb|CBX22714.1| putative cell-binding factor [Neisseria lactamica Y92-1009]
          Length = 288

 Score = 63.9 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/305 (10%), Positives = 80/305 (26%), Gaps = 25/305 (8%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK----INGE 71
           +    +  +  +    S  +         T+NG+ I    I  ++A  + +      + +
Sbjct: 1   MKAKILTSVALLACSGSLFAQT-----LATVNGQKIDSSVIDAQVAAFRAENSSAEDSPQ 55

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           L +  + + I  T+  QE+++  +   +   +      A       +             
Sbjct: 56  LRRALLNQEITHTVVAQEVKRLKLDRSAEFKDMLAKLRAEAEKSGDDK---------KPS 106

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                      +                E +  A    ++        ++          
Sbjct: 107 FKTVWQAVEYGLNGRAYALHIAKTQPVSEQDAKAAYDNIRGFYKGTQEVQLGEILTDKED 166

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
              +     + K   ++ L+     +  ++       V +       E  + P +Q +  
Sbjct: 167 NAKKAVAGLKAKKGFDAVLKQYSLNDHTKQTGKPDGYVPLKDL----EQGVPPLYQAIKD 222

Query: 252 KSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
             +   T  P           + D+RD+         +  Q T     +     V  L  
Sbjct: 223 LKKGEFTATPLKNGDFYGVYYVNDRRDVKV--PSFDEMKEQLTGDLQAERIDRAVGALLD 280

Query: 311 NAIIH 315
            A I 
Sbjct: 281 KADIK 285


>gi|330821358|ref|YP_004350220.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           gladioli BSR3]
 gi|327373353|gb|AEA64708.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           gladioli BSR3]
          Length = 264

 Score = 63.5 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 51/185 (27%), Gaps = 5/185 (2%)

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
                 +    ++  +        E +             +  L+          +    
Sbjct: 67  HAELDDATLDALLARELTHLPKPTEADCRRYYTHHPERFRQGELVHASHILFAVTERVPL 126

Query: 196 GFVQKRIKDAEESRLRLPKDCNK-LEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ 254
             +++R + A    L  P+       + ++       G    LL  D  P+F+  L  ++
Sbjct: 127 APLRERAEAALAEVLAAPERFEALARESSNCPSAAVGGSLGQLLRGDCVPEFEAALFGNE 186

Query: 255 --NNTTNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
                     T+ G   + I  +   +L    A+   ++             +YV  L  
Sbjct: 187 ALGVLPGLVNTRHGFHIVRIERRVPGELQPFEAVSGRIAGFLAERVRRDAMHQYVAILAG 246

Query: 311 NAIIH 315
            A I 
Sbjct: 247 AARIE 251


>gi|240141517|ref|YP_002965997.1| putative peptidyl-prolyl cis-trans isomerse D [Methylobacterium
           extorquens AM1]
 gi|240011494|gb|ACS42720.1| putative peptidyl-prolyl cis-trans isomerse D [Methylobacterium
           extorquens AM1]
          Length = 634

 Score = 63.5 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/403 (8%), Positives = 88/403 (21%), Gaps = 90/403 (22%)

Query: 1   MTSKVFTSLSDFI-KLLTTYFVLIIFCIVPIVSYKSW--AMSSRIRTTINGEVITDGDIS 57
           M   + ++   ++ K++ +     +   V I   + +    SS    T+    I+  ++ 
Sbjct: 1   MLQSIRSASQHWLGKVVLSVIFTFLIAGVAIFGVEEFFRGGSSTAVATVGKTPISAEEVR 60

Query: 58  KRIALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNT--- 101
                   +                  LE+  + +LI E    Q+    G+     T   
Sbjct: 61  TAYQNQLQRYQAQLKRTLTPDQARAMGLERQVLAQLITEAALDQKTTDLGLAVSDATVLR 120

Query: 102 --------------VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
                          +              E       +  I        +  + + P  
Sbjct: 121 AIQDEPSFKNANGSFDRALFFQTLQRAGLNEAMFVREQRSVIARLQLADAIVAEMLVPQA 180

Query: 148 VKNDFMLKYG--------------------NLEMEIPANKQKMKNITVREYLIRTVLFSI 187
           ++                              +  + A  +  K            L  +
Sbjct: 181 IREAVHRYSTERRDAAVLTLAPSAAGEIPAPTDEALNAYYENNKASFRAPEYRSLNLLVL 240

Query: 188 PDNKLQNQGFV------------------QKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
               L     V                   +R    + S            K  S     
Sbjct: 241 DPAALAKPDEVSDDEARKVYDANPGRFGKAERRTIQQISFPDEAAAAEARAKIESGESPF 300

Query: 230 SIG-----------KAQYLLESDL--HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
                             + +++L             Q   + P   + G   + +    
Sbjct: 301 ETVAADRGLDPKQLDLGTMTKAELFDPAVGNAAFALEQGKVSEPVKGRFGTVLLRVTAIE 360

Query: 277 D--LGGEIALKAYLSAQNTPTKIE----KHEAEYVKKLRSNAI 313
              +     +K  +  +    ++         + ++  R++A 
Sbjct: 361 PGTVKPFDEVKDEIRKEIALKRVRDGGFDKVQDAIEDARASAK 403


>gi|170726976|ref|YP_001761002.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella woodyi
           ATCC 51908]
 gi|169812323|gb|ACA86907.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella woodyi
           ATCC 51908]
          Length = 270

 Score = 63.5 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/296 (8%), Positives = 72/296 (24%), Gaps = 44/296 (14%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVET 84
             +       + +       ++NG +I +  ++  +      +    + + A Q L+++ 
Sbjct: 1   MSLCGTNPSTTPSKERLPVISVNGVLIEETQLANELQYHPHGEF-DVVVQRAGQALVIQQ 59

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
           L  ++  K GI     +                                           
Sbjct: 60  LLLEQAVKEGIDVSGESEEAGV-------------------------------------- 81

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK--RI 202
             +++        + +  +   K      T    +    +     N   +     K   +
Sbjct: 82  QLLLQTQVKYDDPDEDDCLRYFKNNRDKFTTAPLMEVDHILLAAANDDLDARDDAKSDAM 141

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN-PY 261
                 +  L       +  +      + G    +      P+F+  L          P 
Sbjct: 142 DIISTLKNDLKLFGELAKHHSVCPSKETGGSLGQISNGQTVPEFERQLMMLPEGLAEKPL 201

Query: 262 VTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            ++ G+  + +  K +        ++  +               Y+  L   A I 
Sbjct: 202 ESRYGLHVVNVARKVEGKALDYSLVQDKVRGYLVHRASHLAIQAYIHGLVQKADIQ 257


>gi|114799875|ref|YP_760276.1| putative peptidylprolyl cis-trans isomerase [Hyphomonas neptunium
           ATCC 15444]
 gi|114740049|gb|ABI78174.1| putative peptidylprolyl cis-trans isomerase [Hyphomonas neptunium
           ATCC 15444]
          Length = 372

 Score = 63.5 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/192 (10%), Positives = 56/192 (29%), Gaps = 6/192 (3%)

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
           +   ++  ++    +++   V+  +        E          +       L  + +  
Sbjct: 59  EPERNSEGQEETPEEALIRAVLNEEVDADPAADEAVRAVYDGNPEGFRSPPLLEASHILV 118

Query: 187 IPDNKLQN--QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD-LH 243
            P +  +   +   +K      + +             ++       G    L   D L 
Sbjct: 119 PPADASEEAYRAAREKARALIADLQANPSGFARMAASRSACPSASEGGSLGQLRPGDVLP 178

Query: 244 PQFQNLLKKSQNNT-TNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKH 300
           P +  L    +      P  T+ G   + +  + D        ++ +++ Q       K 
Sbjct: 179 PIWTALTNMEEGTIRAEPVATEHGWHVLRLDHRSDGERLPFDYVRPHIALQLEARAWTKS 238

Query: 301 EAEYVKKLRSNA 312
            A YV +L + +
Sbjct: 239 AALYVDRLLAES 250


>gi|46579881|ref|YP_010689.1| peptidyl-prolyl cis-trans isomerase C [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602653|ref|YP_967053.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           vulgaris DP4]
 gi|46449297|gb|AAS95948.1| peptidyl-prolyl cis-trans isomerase C [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120562882|gb|ABM28626.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           vulgaris DP4]
 gi|311234118|gb|ADP86972.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           vulgaris RCH1]
          Length = 94

 Score = 63.5 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 7/79 (8%), Positives = 19/79 (24%), Gaps = 1/79 (1%)

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNN 256
            ++   + +                +        G         + P+F + +       
Sbjct: 13  TEEACNELKTRIEGGEDFAEVARASSRCPSGKRGGDLGEFPRGAMVPEFDEAVFTGEVGK 72

Query: 257 TTNPYVTQKGVEYIAICDK 275
              P  TQ G   + +  +
Sbjct: 73  VLGPIRTQFGYHLVEVTSR 91


>gi|74317816|ref|YP_315556.1| hypothetical protein Tbd_1798 [Thiobacillus denitrificans ATCC
           25259]
 gi|74057311|gb|AAZ97751.1| hypothetical protein Tbd_1798 [Thiobacillus denitrificans ATCC
           25259]
          Length = 316

 Score = 63.5 bits (152), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/318 (9%), Positives = 83/318 (26%), Gaps = 58/318 (18%)

Query: 13  IKLLTTYFVLIIFCIVPIVSY------KSWAMSSRIRTTINGEVITDGDISKRIALLKLQ 66
           ++ +   +V ++   +            +   +S++   +NG  +T   ++  +  +   
Sbjct: 1   MQHIKKAYVSLVLAALVTGCGDKKEEAAADKPASQVAAKVNGTELTVHQVNYALQRIPNL 60

Query: 67  KINGE-------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
             +         +  +  QEL+V+   ++++++                           
Sbjct: 61  DKDQAKPASLQVVRNLVDQELVVQRALEEKLDRDPRVV---------------------- 98

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
                                Q +    +           + EI         +  +  +
Sbjct: 99  -------------QAVDSARRQILAEAYMARKLGTPSEPSDGEISEYFNSHPEMFAQRKI 145

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
            R    SI   K ++    ++   +A ++              A     V          
Sbjct: 146 YRLQEVSIQAPKEKHDAIRKQL--EASKTLNDFLAWLKAENLPAKVGQAVK-------PA 196

Query: 240 SDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE-IALKAYLSAQNTPTKIE 298
             L       L +  N          G+  + + D +         K  ++        +
Sbjct: 197 EQLPAAVLPKLAQMPNGQALVANAPNGLLVLVVADSQAQPVTLEQAKPAIARALQAETRQ 256

Query: 299 KHEAEYVKKLRSNAIIHY 316
           K     +  L++NA I Y
Sbjct: 257 KAAKAELDALKANAKIEY 274


>gi|300697132|ref|YP_003747793.1| isomerase [Ralstonia solanacearum CFBP2957]
 gi|299073856|emb|CBJ53380.1| putative isomerase [Ralstonia solanacearum CFBP2957]
          Length = 269

 Score = 63.5 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 78/293 (26%), Gaps = 54/293 (18%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSG 94
           + A+   +   +NG  +T   + + IA    Q    ++ +   Q+LI   L +Q+  K+ 
Sbjct: 16  ADALPPGVIALVNGTQVTQAQLDRAIAQSGAQANP-QIAQALKQQLIARELFRQQAAKNP 74

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
                  V                                 Q      I    +K++   
Sbjct: 75  AYEKLPAVKLAM-----------------------------QEAHDAVITQAWLKDNIKP 105

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
                E         + ++  +EY  R +         Q    +++              
Sbjct: 106 APITDEQVKARYDAIVASLGDKEYKARVIQLGDDVTAAQVLELLKQ-----------GGD 154

Query: 215 DCNKLEKFASKIHDVSIGKAQYL---------LESDLHPQFQNLLKKSQNNT--TNPYVT 263
                +++++  + V  G   ++            +L       +         T P   
Sbjct: 155 FAKLAQQYSTAPNKVRGGDMDWVSFKVPAEEGKTQNLPLPLAREIAALGIGATSTAPVEV 214

Query: 264 QKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                 + +   R   +     +K  +       ++E+   + V  L   A +
Sbjct: 215 GSQRYIVKVEAARPTQVPAYDMVKPAIRQALESAELERVTVQVVGGLLKQAKV 267


>gi|188584391|ref|YP_001927836.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           populi BJ001]
 gi|179347889|gb|ACB83301.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           populi BJ001]
          Length = 634

 Score = 63.5 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/403 (9%), Positives = 93/403 (23%), Gaps = 90/403 (22%)

Query: 1   MTSKVFTSLSDFI-KLLTTYFVLIIFCIVPIVSYKSW--AMSSRIRTTINGEVITDGDIS 57
           M   + ++   ++ K++ T     +   V I   + +    SS    T+    I+  ++ 
Sbjct: 1   MLQSIRSASQHWLGKVVLTVIFTFLIAGVAIFGVEEFFRGGSSTTVATVGKTPISAEEVR 60

Query: 58  KRIALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSN---- 100
                   +                  LE+  + +LI E    Q+    G+         
Sbjct: 61  TAYQNQLQRYQAQLKRTLTPDQARAMGLERQVLAQLITEAALDQKTADLGLAVSDAAVLR 120

Query: 101 -------------TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
                        + +              E       +  I        +  +   P  
Sbjct: 121 AIQDEPSFKNANGSFDRALFFQTLQRAGLNEAMFVREQRSVIARLQLADAIVAELPVPQA 180

Query: 148 VKNDFMLKYG--------------------NLEMEIPANKQKMKNITVREYLIRTVLFSI 187
           ++                              E E+ A     K            L  +
Sbjct: 181 MREAVHRYSTERRDAAVLTLAPSVAGEIPAPTEEELSAYYDNNKASFRAPEYRSLNLLVL 240

Query: 188 PDNKLQNQGFV--QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG------------- 232
               L     V  ++  K  + +  R  K   +  +  S   + +               
Sbjct: 241 DPAALAKPDEVSEEEARKVYDANHSRFGKPERRTIQQISFPDEAAAKEARAKIESGETPF 300

Query: 233 --------------KAQYLLESDL--HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
                             L +++L             Q   + P   + G   + +    
Sbjct: 301 ETVAAARGLDPKQLDLGTLTKAELFDPAVGDAAFALEQGKVSEPVKGRFGTVLLRVTAIE 360

Query: 277 D--LGGEIALKAYLSAQNTPTKIE----KHEAEYVKKLRSNAI 313
              +     +K  +  +    ++         + ++  R++A 
Sbjct: 361 PGTVKPFDEVKDEIRREIALKRVRDGGFDKVQDAIEDARASAK 403


>gi|146281972|ref|YP_001172125.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas stutzeri A1501]
 gi|145570177|gb|ABP79283.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas stutzeri A1501]
 gi|327480218|gb|AEA83528.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas stutzeri DSM
           4166]
          Length = 93

 Score = 63.5 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 8/81 (9%), Positives = 26/81 (32%), Gaps = 1/81 (1%)

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT 257
            + +  + + +           ++ ++       G         +  +F  ++  +  N 
Sbjct: 13  TEAKCNELKAAIEGGADFAQVAKENSTCPSSRQGGDLGSFGPGQMVKEFDTVVFSAPLNV 72

Query: 258 T-NPYVTQKGVEYIAICDKRD 277
              P  TQ G   + +  ++D
Sbjct: 73  VQGPVKTQFGYHLLEVTSRQD 93


>gi|284035739|ref|YP_003385669.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirosoma linguale
           DSM 74]
 gi|283815032|gb|ADB36870.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirosoma linguale
           DSM 74]
          Length = 797

 Score = 63.5 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/291 (9%), Positives = 66/291 (22%), Gaps = 27/291 (9%)

Query: 52  TDGDISKRIALLKLQKINGELEKIAV-QELIVETLKKQEIEKSGITF-----------DS 99
           T     + +   + Q     L    + + L  E  ++ + + +               D+
Sbjct: 89  TTEAFREEMNTYRKQLAQSYLTDKVLVESLAAEAYQRMQEDVNASHIFIPVSEYAQPSDT 148

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK----NDFMLK 155
                  +   +      +      +                    + V       +   
Sbjct: 149 LVAYQTIMSLRKQALEGTDFTKLARENSKDVKTAQNGGSLGYIAAFENVYPLETAAYTTP 208

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD-------NKLQNQGFVQKRIKDAEES 208
              + M +                 R  +                 Q   Q+RI      
Sbjct: 209 VNGISMPVRTRFGYHILKVNNRRPSRGRVRVAHILVRMSPAADEAGQKAAQERINKVYAQ 268

Query: 209 RLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQK 265
             R           +       + G           P F++         + + P  T  
Sbjct: 269 LQRGESFEQVCRLVSDDATSKANGGVLPPFEPGRWVPAFEDAAFALSKPGDYSKPVKTNY 328

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQN-TPTKIEKHEAEYVKKLRSNAIIH 315
           G   I + +++ L     L   L  +  T ++ +      V++L+    + 
Sbjct: 329 GWHIIKLIERKGLESFTTLAPSLRQRVTTDSRADMLRQVTVQRLQKEYPVQ 379


>gi|127513432|ref|YP_001094629.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella loihica
           PV-4]
 gi|126638727|gb|ABO24370.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella loihica
           PV-4]
          Length = 621

 Score = 63.5 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/260 (8%), Positives = 59/260 (22%), Gaps = 8/260 (3%)

Query: 55  DISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV--NYFFVQHARN 112
            +  +    +         +  V  ++          +        T    Y  V     
Sbjct: 144 QLGYQANSFRDMMRGDMTRRQLVVTVVGSEFVLPGEAEYLAKIQGQTRDIRYHVVDAEPM 203

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
               +              + F +   I   + ++  N         + E      + K 
Sbjct: 204 LATVSVSDEEANTYYQQNQSLFVRPETISLDYIELSANQLASAIQVSDEEAKTYYDENKA 263

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSI 231
             ++          +     ++    +      +             +  +         
Sbjct: 264 QYLQPEKRLAAHILVSLGDDEDAAKAKAEAIMTK--LKAGEDFEALAKSDSDDSFSGEQG 321

Query: 232 GKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYL 288
           GK  +  +  +   F   L    +   ++   T  G   I + D +        A+K  +
Sbjct: 322 GKLDWFEQGVMEAPFDQALFALEKGQYSDIVKTSFGYHIIKLLDLQAASTSPFEAVKDKI 381

Query: 289 SAQNTPTKIEKHEAEYVKKL 308
            AQ    K         ++L
Sbjct: 382 VAQIQQDKAVNEFYTLQQRL 401



 Score = 63.2 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 66/238 (27%), Gaps = 19/238 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+       I       V++ F    + SY   +       T+NGE I+   + +  
Sbjct: 1   MLEKIREGSQGVIAKGILVLVILSFAFTGVSSYLGSSSEPS-AATVNGEEISKSALEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     +++  ++ LI + L  Q     G+T     +  
Sbjct: 60  QSERARLEQQLGDMYDTLASNESYLASVKQNVLERLIADKLVDQAAADLGLTVSDQQIKT 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
             +           D   +L            +     +  D+ +   ++     E  +P
Sbjct: 120 AIMNEPAFQTDGKFDNDRYLALIRQLGYQANSF--RDMMRGDMTRRQLVVTVVGSEFVLP 177

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
              + +  I  +   IR  +              ++     ++++    +       +
Sbjct: 178 GEAEYLAKIQGQTRDIRYHVVDAEPMLATVSVSDEEANTYYQQNQSLFVRPETISLDY 235


>gi|123440559|ref|YP_001004553.1| peptidyl-prolyl cis-trans isomerase C [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|238750649|ref|ZP_04612148.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia rohdei ATCC
           43380]
 gi|238759819|ref|ZP_04620976.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia aldovae
           ATCC 35236]
 gi|332159789|ref|YP_004296366.1| peptidyl-prolyl cis-trans isomerase C [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|122087520|emb|CAL10301.1| peptidyl-prolyl cis-trans isomerase C [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|238701962|gb|EEP94522.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia aldovae
           ATCC 35236]
 gi|238711039|gb|EEQ03258.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia rohdei ATCC
           43380]
 gi|318607672|emb|CBY29170.1| peptidyl-prolyl cis-trans isomerase ppiC [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325664019|gb|ADZ40663.1| peptidyl-prolyl cis-trans isomerase C [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330859832|emb|CBX70164.1| peptidyl-prolyl cis-trans isomerase C [Yersinia enterocolitica
           W22703]
          Length = 93

 Score = 63.5 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 1/76 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           +K+  D               +KF++     + G      + D+ P F + +        
Sbjct: 15  EKQANDILAQLNNGANFQELAKKFSNCPSKRNGGDLGEFNKGDMVPAFDKAVFSCELLQP 74

Query: 258 TNPYVTQKGVEYIAIC 273
             P  TQ G   I + 
Sbjct: 75  YGPVKTQFGYHIIKVL 90


>gi|238798858|ref|ZP_04642326.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia mollaretii
           ATCC 43969]
 gi|238717308|gb|EEQ09156.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia mollaretii
           ATCC 43969]
          Length = 98

 Score = 63.5 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 1/76 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           +K+  D               +KF++     + G      + D+ P F + +        
Sbjct: 20  EKQANDILAQLNNGADFQELAKKFSNCPSKRNGGDLGEFNKGDMVPAFDKAVFSCELLQP 79

Query: 258 TNPYVTQKGVEYIAIC 273
             P  TQ G   I + 
Sbjct: 80  YGPVKTQFGYHIIKVL 95


>gi|325277737|ref|ZP_08143302.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas sp.
           TJI-51]
 gi|324097130|gb|EGB95411.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas sp.
           TJI-51]
          Length = 93

 Score = 63.5 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 8/82 (9%), Positives = 24/82 (29%), Gaps = 1/82 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-N 255
             + +  + +             +  ++       G         +  +F  ++  +  N
Sbjct: 12  ASEDKCNELKAQIEAGADFAEIAKANSTCPSSRQGGDLGSFGPGQMVKEFDTVVFSAPVN 71

Query: 256 NTTNPYVTQKGVEYIAICDKRD 277
               P  TQ G   + +  ++D
Sbjct: 72  TVQGPVKTQFGYHLLEVTSRQD 93


>gi|93278583|pdb|1ZK6|A Chain A, Nmr Solution Structure Of B. Subtilis Prsa Ppiase
          Length = 93

 Score = 63.5 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 2/80 (2%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL-LESDLHPQF-QNLLKKSQ 254
             +K  ++ E+   +  K  +  +++++       G   +   E  +   F +   K   
Sbjct: 13  ADKKTAEEVEKKLKKGEKFEDLAKEYSTDSSASKGGDLGWFAKEGQMDETFSKAAFKLKT 72

Query: 255 NNTTNPYVTQKGVEYIAICD 274
              ++P  TQ G   I   +
Sbjct: 73  GEVSDPVKTQYGYHIIKKTE 92


>gi|89891030|ref|ZP_01202538.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteria
           bacterium BBFL7]
 gi|89516674|gb|EAS19333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteria
           bacterium BBFL7]
          Length = 658

 Score = 63.5 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 59/225 (26%), Gaps = 5/225 (2%)

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
               N++       A  + L+                 F  +  +               
Sbjct: 148 WNKINSIKNELDNGADFSQLARTKSEGPSAGNEGKLGWFSVFRMVYPFENAAFNTPVGKH 207

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
                 +   +  K+         +        D +  ++    KRI+D  +      K 
Sbjct: 208 SDIFRTDFGYHIVKVFEDRPARGEVTVSHIMTFDARDASEKTAAKRIQDVYKQLQESGKF 267

Query: 216 CNKLEKFASKIH-DVSIGKAQYLLESDLHPQFQNLLKK---SQNNTTNPYVTQKGVEYIA 271
                +F+  +      GK        L+      +      + + + P+ ++ G   + 
Sbjct: 268 EELAREFSDDMSSASRGGKLDRFGTGGLNAPVFEDIAFGLEEKGSYSAPFKSKFGWHIVK 327

Query: 272 ICDKRDLGGEIALKAYLSAQNT-PTKIEKHEAEYVKKLRSNAIIH 315
           + +K  +G    L   L  +     +  K    + K LR    + 
Sbjct: 328 LIEKHPVGSYEELAPSLKEKIRKSPRARKITDSFNKGLREKYNVK 372


>gi|238755780|ref|ZP_04617112.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia ruckeri
           ATCC 29473]
 gi|238706007|gb|EEP98392.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia ruckeri
           ATCC 29473]
          Length = 93

 Score = 63.5 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 1/76 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           +K+  D               +K ++     + G      + D+ P F + +        
Sbjct: 15  EKQANDILAQLNNGANFQELAKKHSNCPSKRNGGDLGEFNKGDMVPAFDKAVFSCELLQP 74

Query: 258 TNPYVTQKGVEYIAIC 273
             P  TQ G   I + 
Sbjct: 75  YGPVKTQFGYHIIKVL 90


>gi|26989798|ref|NP_745223.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           KT2440]
 gi|148547861|ref|YP_001267963.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           F1]
 gi|170721885|ref|YP_001749573.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           W619]
 gi|24984695|gb|AAN68687.1|AE016497_12 peptidyl-prolyl cis-trans isomerase C [Pseudomonas putida KT2440]
 gi|148511919|gb|ABQ78779.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           F1]
 gi|169759888|gb|ACA73204.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           W619]
 gi|313498898|gb|ADR60264.1| PpiC [Pseudomonas putida BIRD-1]
          Length = 93

 Score = 63.5 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 8/80 (10%), Positives = 24/80 (30%), Gaps = 1/80 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNT 257
           + +  + +             +  ++       G         +  +F  ++  +  N  
Sbjct: 14  EDKCNELKAQIEAGADFAEIAKANSTCPSSRQGGDLGSFGPGQMVKEFDTVVFSAPVNTV 73

Query: 258 TNPYVTQKGVEYIAICDKRD 277
             P  TQ G   + +  ++D
Sbjct: 74  QGPVKTQFGYHLLEVTSRQD 93


>gi|302753416|ref|XP_002960132.1| hypothetical protein SELMODRAFT_74131 [Selaginella moellendorffii]
 gi|300171071|gb|EFJ37671.1| hypothetical protein SELMODRAFT_74131 [Selaginella moellendorffii]
          Length = 148

 Score = 63.2 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 12/103 (11%), Positives = 31/103 (30%), Gaps = 2/103 (1%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
                R VL             +Q    +  +      +      +F+        G   
Sbjct: 47  TYVKARHVLCEKQGRINDAYKKLQDGWINNGDKVP-PAEFAKVAAEFSECPSGKKGGDLG 105

Query: 236 YLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRD 277
           +     +   FQ +   +   +T+ P+ +  G  +I +  +++
Sbjct: 106 WFPRGKMAGPFQEVAFSTPVGSTSAPFKSTHGYHFILVEGRKN 148


>gi|46199933|ref|YP_005600.1| hypothetical protein TTC1631 [Thermus thermophilus HB27]
 gi|46197560|gb|AAS81973.1| hypothetical conserved protein [Thermus thermophilus HB27]
          Length = 608

 Score = 63.2 bits (151), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/303 (9%), Positives = 67/303 (22%), Gaps = 26/303 (8%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISK-RIALLKLQKINGELEKIAVQELIVETLKKQ 88
                      +    +NG+ + + D+ + +            L K  V    +E +   
Sbjct: 28  FTPQAGQQTRGKPVLWVNGKALYELDLLRLQGNDPLYAASPEGLLKTLVDTYFLEQVILT 87

Query: 89  EIEKS---GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
           E  K     +   S  V     +     GL  +        Q    +   +      +  
Sbjct: 88  EALKQDAARVRVSSAEVRQEVNRIREQFGLKDKAAYEQFLNQVGYTDAQLRAEVKTQLQI 147

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
                         E E+    +  K     E  ++     + D  L  +   +      
Sbjct: 148 QKRLEQIRSGAKPTEEEVRFYYEVFKENYRTEPRVKARQIVVDDKALAEELAAK------ 201

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK----------SQN 255
                          + +  +     G                ++               
Sbjct: 202 ---AKAGEDFAALARQHSK-VGAEQGGALGAGPGEAEPKPVTQVVFPTEVGEAVFALKGP 257

Query: 256 NTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
               P         + + +           +K  ++      K       Y+++LR  A 
Sbjct: 258 GVVGPIAAGGRYYIVKVEEYLPSTLPAFEEVKDRVAQDAERAKGNGVLEAYLEELRKKAQ 317

Query: 314 IHY 316
           + +
Sbjct: 318 VRF 320



 Score = 59.7 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/294 (9%), Positives = 73/294 (24%), Gaps = 55/294 (18%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKS 93
             +A  +     +N + I   ++   +  +   +    L +  + EL V+          
Sbjct: 324 NPYAYQNPPVAKVNEKEILLSEV---LQPVFSNQQTVALVQQGLGELAVQFFL------- 373

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
             T ++       V+ AR +G                          +     +      
Sbjct: 374 PQTLENLIDRELLVEAARKSG------------------KPFIGSKAEIAEAYLRYE--T 413

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                 E E  A   +   +       + +  +            + + K    + LR  
Sbjct: 414 RDVTASEEEARAFYSENPALFTVPASAKVIGVNF---------KEEAQAKAFRAAALRGG 464

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--------QNLLKKSQNNTTNPYVTQK 265
                 +       + ++     +  + L            +   +      +     + 
Sbjct: 465 DLEALAKA-----QEGTVTDYGTVNPNQLPAVLDRLVFKITETFPQGPLGEVSEVIKMED 519

Query: 266 G-VEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G    + I D++  +L G   +           K  +     ++ LR  A I  
Sbjct: 520 GSYTVLLISDRKAEELKGFAQVAEEARQGAVNRKRSEKAQALIQALREEAKIEN 573


>gi|331000013|ref|ZP_08323709.1| PPIC-type PPIASE domain protein [Parasutterella excrementihominis
           YIT 11859]
 gi|329573161|gb|EGG54778.1| PPIC-type PPIASE domain protein [Parasutterella excrementihominis
           YIT 11859]
          Length = 270

 Score = 63.2 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/300 (9%), Positives = 89/300 (29%), Gaps = 49/300 (16%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ--KINGELEKIAVQ 78
           VL  F +   ++    A  ++   T+NG+ ++  +  + +  L+        +L+  A  
Sbjct: 5   VLKSFVLAAALAGVLPAAVAQTAFTVNGQFVSVEEQKQLMDFLRANGVTNEKQLKNAARS 64

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
            L+ + + +Q     G+  D         + A+                           
Sbjct: 65  ILLEQKIIEQAARNEGLLEDPRVRVLISEKQAQ--------------------------- 97

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
               ++  ++   +  ++   E ++      + +      +    +      + +     
Sbjct: 98  ----LYGSILSRRYASEHPITEEQVRNRYDSLLSSYDPHEIKFRHILVKTPEEAREIIQS 153

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYLL-ESDLHPQFQNLLKKSQNN 256
            K                +  ++ +       + G+  +    + L P     +   Q  
Sbjct: 154 LKV----------GSDFGSLAKERSLDQSTSQNGGQIPFTNIRNVLVPGLAEAILALQPG 203

Query: 257 --TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                P+ ++ G   + + +KR++         +  +           E++  L+ +A I
Sbjct: 204 DLLPVPFKSKLGYHVVLLEEKREVPF--PSYEEVKPKVLSELERLQTTEFLNDLQKDAKI 261


>gi|322379060|ref|ZP_08053463.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter suis
           HS1]
 gi|321148552|gb|EFX43049.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter suis
           HS1]
          Length = 267

 Score = 63.2 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 64/242 (26%), Gaps = 9/242 (3%)

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
              + KQ                  ++ A N  L   +                     Q
Sbjct: 25  DFDVIKQRNPNFDFNKLKPEQKKALLEQAINNLLIEREAKKEKLDDTAEFAKRMAGYKKQ 84

Query: 142 SI---WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
            +   W          +    +      +        +E   R +L     +  +    +
Sbjct: 85  LLVEIWAKHQAEAIGKEDIPEDQLRKYYQDNKTQFVQQEAKARHILVKTEADAKRVISEL 144

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNT 257
            K  K   E         N+     +  +  + G      ++ + P+F N +      + 
Sbjct: 145 NKTPKTRIEK--EFIDIANRESIDPNTKNSKNGGDLGKFQKNQMAPEFSNAVFALKPGSY 202

Query: 258 TN-PYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           T  P  T+ G   I +  K +         +  +       + +++    ++KLR N  I
Sbjct: 203 TKTPVKTEFGYHVIYLMSKNEPKTPTFEQARQTIIGILKEHQFQEYVKGELEKLRKNVRI 262

Query: 315 HY 316
           + 
Sbjct: 263 NI 264


>gi|255014827|ref|ZP_05286953.1| parvulin-like peptidyl-prolyl isomerase [Bacteroides sp. 2_1_7]
          Length = 522

 Score = 63.2 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 13/150 (8%), Positives = 44/150 (29%), Gaps = 4/150 (2%)

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-S 224
                K    R ++   ++    D+ +Q+      + +   +            ++++  
Sbjct: 218 KVHSRKPNPGRVHVAHILIAFPKDSAIQDSSAFLAKAQAIYKQVQEGADFGELAKEYSGD 277

Query: 225 KIHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLGGEI 282
                  G   +    ++   F+          + +    T+ G   I + DK+      
Sbjct: 278 AASAKKEGVLPWFGVGEMVQPFEQAAFALSKPGDLSEVVETRFGYHIIKLIDKKGRPSFE 337

Query: 283 ALKAYLSAQNTPTKIE-KHEAEYVKKLRSN 311
             +  LS +    +   +    +  +++  
Sbjct: 338 EEEKALSRRMGQGERNFELYKAFDDRMKKE 367



 Score = 40.8 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/262 (10%), Positives = 58/262 (22%), Gaps = 40/262 (15%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           +LI   +   V+  +   S  +  T+ G+ +   +                         
Sbjct: 4   LLISLGVFACVTVNAQTASDSVVMTVAGKQVPLSEF------------------------ 39

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
                     +   +   +      +V+  +N  L   +  S    Q             
Sbjct: 40  -----IFIAEKNGEVDLSNTKSVKNYVELFKNFKLKVAEAESLGIDQTSSFKSELDGYRA 94

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           Q                + E E  A +           L   +         ++   V +
Sbjct: 95  QL---------IDSYMSDKEGEKAAARAVYDRGDHSVELTHILFRLPEKTVSKDTVAVYQ 145

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY--LLESDLHPQFQNLLKKSQNNTT 258
                 E   +        +  A K  +    +     L    L               +
Sbjct: 146 EAMRVYERLQKGEDMETVGKALAEKDKEHVACEYVRCLLPMQSLKVFEDAAYSLPIGVVS 205

Query: 259 NPYVTQKGVEYIAICDKRDLGG 280
            P  T+ G   I +  ++   G
Sbjct: 206 EPVRTKLGFHLIKVHSRKPNPG 227


>gi|207723025|ref|YP_002253444.1| ppic-type peptidyl-prolyl cis-trans isomerase protein [Ralstonia
           solanacearum MolK2]
 gi|206588214|emb|CAQ18779.1| ppic-type peptidyl-prolyl cis-trans isomerase protein [Ralstonia
           solanacearum MolK2]
          Length = 268

 Score = 63.2 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/286 (11%), Positives = 75/286 (26%), Gaps = 54/286 (18%)

Query: 42  IRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           +   +NG  +T   + + IA    Q    ++ +   Q+LI   L +Q+  K+        
Sbjct: 22  VIALVNGTQVTQAQLDRAIAQSGAQANP-QIAQALKQQLIARELFRQQAAKNPAYEKLPA 80

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
           V                                 Q      I    +K++        E 
Sbjct: 81  VKLAM-----------------------------QEAHDAVITQAWLKDNIKPAPITDEQ 111

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
                   + ++  +EY  R +         Q    +++                   ++
Sbjct: 112 VKARYDAIVASLGDKEYKARVIQLGDDVTAAQVLALLKQ-----------GGDFAKLAQQ 160

Query: 222 FASKIHDVSIGKAQYL---------LESDLHPQFQNLLKKSQNNT--TNPYVTQKGVEYI 270
           +++  + V  G   ++            +L       +         T P         +
Sbjct: 161 YSTAPNKVRGGDMDWVSFKVPAEEGKTQNLPLPLAREIAALGIGATSTAPVEVGSQRYIV 220

Query: 271 AICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            +   R   +     +K  +       ++E+   + V  L   A +
Sbjct: 221 KVEAARPTQVPAYDTVKPAIRQALESAELERVTVQVVGGLLKQAKV 266


>gi|329119300|ref|ZP_08247987.1| peptidyl-prolyl cis-trans isomerase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464647|gb|EGF10945.1| peptidyl-prolyl cis-trans isomerase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 603

 Score = 63.2 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/382 (8%), Positives = 89/382 (23%), Gaps = 75/382 (19%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVI------------- 51
           +F ++  +         LI    V   +    A  S     + GE I             
Sbjct: 1   MFATVEKYSGPAKIMLGLIALTFVGFGAGGIIATGSDYIVKVGGEKISTQNVQEAQREQN 60

Query: 52  ----------------------------TDGDISK----------------RIALLKLQK 67
                                       ++  + +                        +
Sbjct: 61  LGSGQDALAYLTERAYLAEGAKMMGIGVSEAQLKQVIVDDPGFHDENGRFSEAKFRLFLQ 120

Query: 68  INGELEKIAVQELIVETLKKQEIE-----------KSGITFDSNTVNYFFVQHARNTGLS 116
             G  E+  ++ L      +  +            ++         +      A +    
Sbjct: 121 QGGLTEERFLENLRNSFALQNLVNLAGGGNIVSSAQAEQYAALMLADREIRSIALDPKTF 180

Query: 117 AEDFSSFLDKQGIGDNHFKQYLA-IQSIWPDVVK---NDFMLKYGNLEMEIPANKQKMKN 172
           A    +         +  K      Q++    ++             E E+    ++ + 
Sbjct: 181 AAQIKADDAALKAYYDKDKSKYRLPQAVKYQYIELSPRTLAESQKVGEDELKKAFEEQQK 240

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
                  +  ++     +  + +   +K + +A+ +  +  +   K  + A      + G
Sbjct: 241 NAAPTREVAHIMLKTEGDAAKTKAEAEKILAEAKAAPEKFAELAAKYSQDAG--TAQTGG 298

Query: 233 KAQYLLESD-LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ 291
               + +   L   F+  +             +     + + + R        K  L A 
Sbjct: 299 SLGAVGKDSPLPEAFKTAVSALGQGDIALVEGEGAFHIVRVGNVRSGLSFEEAKPALEAA 358

Query: 292 NTPTKIEKHEAEYVKKLRSNAI 313
               K  +  A+    LR  A 
Sbjct: 359 LKEKKAREAVAKTRDTLRQIAF 380


>gi|254360504|ref|ZP_04976653.1| peptidylprolyl isomerase [Mannheimia haemolytica PHL213]
 gi|153091044|gb|EDN73049.1| peptidylprolyl isomerase [Mannheimia haemolytica PHL213]
          Length = 623

 Score = 63.2 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/251 (5%), Positives = 53/251 (21%), Gaps = 13/251 (5%)

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH--ARNTGLSAEDFSSFLD 125
             G L+    + +I         +                +   A+              
Sbjct: 156 QEGMLQSQLQEGIINSDFNVPAQQALLAKLLLQQREVRLAEFSVAKEMENQTASEQELRA 215

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
                         +   +  +   D   K      +I     + K   V +        
Sbjct: 216 YYEANKTKLLAPEKLAVEYVTLSPKDVESKVEITNEQIQTYYDRNKADYVTKGEAHLAHI 275

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ 245
            +             +  +   +  +         K +  +   + G   +         
Sbjct: 276 QVASEAEAQAIEQALKNGEDFATLAKN--------KSSDTLSANNGGDLGWAKAGTFPKA 327

Query: 246 FQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEI--ALKAYLSAQNTPTKIEKHEA 302
           F++ +   +    +           I + +++         +K  ++       +     
Sbjct: 328 FEDAVANLTAGQMSAAVKVDNAYHIIKVLERKPEQVIELAQVKDKIAQTIRQELVLTEYF 387

Query: 303 EYVKKLRSNAI 313
              +++ + A 
Sbjct: 388 TVAREMANKAF 398



 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 69/238 (28%), Gaps = 20/238 (8%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+    +  +      F L+    V                 +NGE I+    +  +
Sbjct: 1   MIEKMHERTNGPV--FKIIFALVSISFVIGGIGTGLISQDNSVAKVNGEEISQQLFNNTL 58

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                    +  +  +  LI E L +Q  ++  +   ++ +  
Sbjct: 59  NREQNRLNAELGSRFWDLMDSPEYAAQFNQSVLNGLIDEELLRQYAKELKLGISADQIKS 118

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
             V               +       +     Y A   +   ++++       N +  +P
Sbjct: 119 EIVNSQMFQQDGKFSNELYQQTLRHNNLSADGYAA--IVQEGMLQSQLQEGIINSDFNVP 176

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           A +  +  + +++  +R   FS+           Q+     E ++ +L        ++
Sbjct: 177 AQQALLAKLLLQQREVRLAEFSVAKEMENQTASEQELRAYYEANKTKLLAPEKLAVEY 234


>gi|83311573|ref|YP_421837.1| parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magneticum AMB-1]
 gi|82946414|dbj|BAE51278.1| Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magneticum AMB-1]
          Length = 106

 Score = 63.2 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 9/89 (10%), Positives = 24/89 (26%), Gaps = 1/89 (1%)

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
           +     +++      I + +E   +         +++        G      +  + P+F
Sbjct: 18  MRSQATRSKDEALTEINNIKEEINQGADFGQMARQYSDCPSSEDGGDLGEFPKGAMVPEF 77

Query: 247 QNLLKK-SQNNTTNPYVTQKGVEYIAICD 274
           +           +    T  G   I   D
Sbjct: 78  EVAAFALKSGEVSGVVETPFGFHLIQRTD 106


>gi|150008996|ref|YP_001303739.1| parvulin-like peptidyl-prolyl isomerase [Parabacteroides distasonis
           ATCC 8503]
 gi|149937420|gb|ABR44117.1| parvulin-like peptidyl-prolyl isomerase [Parabacteroides distasonis
           ATCC 8503]
          Length = 522

 Score = 63.2 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 13/150 (8%), Positives = 44/150 (29%), Gaps = 4/150 (2%)

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-S 224
                K    R ++   ++    D+ +Q+      + +   +            ++++  
Sbjct: 218 KVHSRKPNPGRIHVAHILIAFPKDSAIQDSSAFLAKAQAIYKQVQEGADFGELAKEYSGD 277

Query: 225 KIHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLGGEI 282
                  G   +    ++   F+          + +    T+ G   I + DK+      
Sbjct: 278 AASAKKEGVLPWFGVGEMVQPFEQAAFALSKPGDLSEVVETRFGYHIIKLIDKKGRPSFE 337

Query: 283 ALKAYLSAQNTPTKIE-KHEAEYVKKLRSN 311
             +  LS +    +   +    +  +++  
Sbjct: 338 EEEKALSRRMGQGERNFELYKAFDDRMKKE 367



 Score = 40.8 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 27/262 (10%), Positives = 58/262 (22%), Gaps = 40/262 (15%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           +LI   +   V+  +   S  +  T+ G+ +   +                         
Sbjct: 4   LLISLGVFACVTVNAQTASDSVVMTVAGKQVPLSEF------------------------ 39

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
                     +   +   +      +V+  +N  L   +  S    Q             
Sbjct: 40  -----IFIAEKNGEVDLSNTKSVKNYVELFKNFKLKVAEAESLGIDQTSSFKSELDGYRA 94

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           Q                + E E  A +           L   +         ++   V +
Sbjct: 95  QL---------IDSYMSDKEGEKAAARAVYDRGDHSVELTHILFRLPEKTVSKDTVAVYQ 145

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY--LLESDLHPQFQNLLKKSQNNTT 258
                 E   +        +  A K  +    +     L    L               +
Sbjct: 146 EAMRVYERLQKGEDMETVGKALAEKDKEHVACEYVRCLLPMQSLKVFEDAAYSLPIGVVS 205

Query: 259 NPYVTQKGVEYIAICDKRDLGG 280
            P  T+ G   I +  ++   G
Sbjct: 206 EPVRTKLGFHLIKVHSRKPNPG 227


>gi|152991383|ref|YP_001357105.1| hypothetical protein NIS_1642 [Nitratiruptor sp. SB155-2]
 gi|151423244|dbj|BAF70748.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 279

 Score = 63.2 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 90/284 (31%), Gaps = 26/284 (9%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKS 93
               +   I   +N E IT  +I+K I    L        + A+Q LI E L+ ++I+K 
Sbjct: 15  SYGKIIDGIAVIVNDEPITLYEINKVINTTGLS------RREAIQLLIREKLENEQIKKL 68

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
           G+T D   ++    + A+  G         +  QG     FK+ L  Q +   +      
Sbjct: 69  GVTVDDIELDQALEKIAKQKGTDLFGLQEAIISQGGDWEKFKEGLRKQLLRKKL-YAALT 127

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
            +      E    +    +    E      +        +    + +       +   L 
Sbjct: 128 RQQTQKLSEKDLKEYYETHKNEFEIAKEADIVKYISPSKEVLAKIAQNPLYQPSNNALLQ 187

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAIC 273
           K   K+               Q +           L +  + + T           I I 
Sbjct: 188 KGEEKI-------------DLQKVN----PQFAYLLNQTPEGSFTKILPMGDKYLLIYIK 230

Query: 274 DK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            K  ++       K Y+  + + T   K+  EY  KL+++A I 
Sbjct: 231 HKYGKEYIPFEEAKGYILNRLSKTSGVKNVKEYFDKLKASANIK 274


>gi|56461511|ref|YP_156792.1| parvulin-like peptidyl-prolyl isomerase [Idiomarina loihiensis
           L2TR]
 gi|56180521|gb|AAV83243.1| Parvulin-like peptidyl-prolyl isomerase [Idiomarina loihiensis
           L2TR]
          Length = 92

 Score = 63.2 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 11/80 (13%), Positives = 20/80 (25%), Gaps = 1/80 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN- 255
             +   +  +E   +  K      K +        G         + P F  ++      
Sbjct: 12  ETKDEAEKLKEQLTKGAKFAELARKHSLCPSGKKGGDLGEFSRGQMVPAFDKVVFGKPTL 71

Query: 256 NTTNPYVTQKGVEYIAICDK 275
               P  TQ G   I    +
Sbjct: 72  EVHGPVKTQFGWHLIKTLSR 91


>gi|330968107|gb|EGH68367.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 93

 Score = 63.2 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 24/80 (30%), Gaps = 1/80 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNT 257
           + +  + +             +  +S       G         +  +F  ++  +  N  
Sbjct: 14  EDKCNELKTQIEGGADFAEVAKANSSCPSSRQGGDLGSFGPGQMVKEFDTVVFSAPVNTV 73

Query: 258 TNPYVTQKGVEYIAICDKRD 277
             P  TQ G   + +  ++D
Sbjct: 74  QGPVKTQFGYHLLEVTSRQD 93


>gi|167622122|ref|YP_001672416.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           halifaxensis HAW-EB4]
 gi|167352144|gb|ABZ74757.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           halifaxensis HAW-EB4]
          Length = 271

 Score = 63.2 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/221 (9%), Positives = 58/221 (26%), Gaps = 4/221 (1%)

Query: 99  SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGN 158
               N  F    +  G +       +++              Q I   +       +   
Sbjct: 37  QYHSNSDFDVVVQQAGQTLVIRQLLIEQAKQNGVDVTADNEEQGIGQLLADKVVYQEPSE 96

Query: 159 LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
            +        + K +T     +  +L        + +   ++  ++      +      +
Sbjct: 97  EDCLRYFQNNREKFVTAPLLEVDHILLPASAEDEEAKEVARQNAENILVQLSQDISCFAE 156

Query: 219 -LEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR 276
             +K+++     + G    +      P+F+   ++  +     P  ++ G   + I  K 
Sbjct: 157 LAKKYSACPSKETGGSLGQISSGQTVPEFEQQLMQHGEGLVEQPLASRYGFHVVNIARKV 216

Query: 277 DLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           D        +   +               Y+  L   A I 
Sbjct: 217 DGKQLDYNMVADKVKGYLVHRASRLAIQAYIHGLVEVAEIE 257


>gi|283851044|ref|ZP_06368329.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio sp.
           FW1012B]
 gi|283573690|gb|EFC21665.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio sp.
           FW1012B]
          Length = 650

 Score = 63.2 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/200 (8%), Positives = 52/200 (26%), Gaps = 9/200 (4%)

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
                      + F     I+  + +             + +I    +  +    +   +
Sbjct: 208 DQIKAYYEARKDQFATPAQIRIDYVEFTPKALAKPAEVTDADIETAYKANQKKYAKPEQV 267

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI---GKAQYL 237
           R   F +       +  V       ++   +L    +         ++          +L
Sbjct: 268 RVRHFLVMLPADAPKEAVDAATAKLKDLAAKLKAGADFASLLPKNPNNPEGLIGEDWAWL 327

Query: 238 LESDLHPQF----QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEI--ALKAYLSAQ 291
            +  L  +F    +      ++    P  T  G+  I   + +  G +    +K  + + 
Sbjct: 328 PKGSLPKEFGAFEEKAFSLKKDEIGEPVRTALGLHLIQAGEHQAAGEKTLAEVKDEIRSD 387

Query: 292 NTPTKIEKHEAEYVKKLRSN 311
               K      + +  ++  
Sbjct: 388 LAEQKAADKLTKALDTIQEK 407



 Score = 55.8 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/325 (8%), Positives = 70/325 (21%), Gaps = 42/325 (12%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +      +   +    ++++F    + S++       +  TI+G+ +   D  K  
Sbjct: 1   MLDPMRKYAQSWGIKIVFGLIILVFVFWGVGSFQGDKA--TVLATIDGQPVLIKDYEKAY 58

Query: 61  ALLKLQKINGE------------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
                   N                      ++   L + +  K GI      +     +
Sbjct: 59  QENLRLVKNKNPNVTDKDLQDGGFRWQVFSNMVTTRLLEDQAAKLGIAVSPEELRAEIAK 118

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
                  S +  +   +     ++              +++                  +
Sbjct: 119 IPAFQNESKQFDAKRYENLLQANDVTPGEFEADFRQNLLLE-KLAAYVSLPAAVTDTEAR 177

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
            + +    +  I  + F   D          +     E  + +          +      
Sbjct: 178 SIFDFMREQATIHYIPFKTEDFTKGVAPTADQIKAYYEARKDQFATPAQIRIDYV----- 232

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP-YVTQKGVEYIAICDKRDLGGEIALKAY 287
                           +F           T+    T           K+    E     +
Sbjct: 233 ----------------EFTPKALAKPAEVTDADIETAY-----KANQKKYAKPEQVRVRH 271

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNA 312
                     ++       KL+  A
Sbjct: 272 FLVMLPADAPKEAVDAATAKLKDLA 296


>gi|330958458|gb|EGH58718.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 93

 Score = 63.2 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 24/80 (30%), Gaps = 1/80 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           + +  + +             +  +S       G         +  +F  ++  +  N  
Sbjct: 14  EDKCNELKTQIEGGADFAEIAKANSSCPSSRQGGDLGSFGPGQMVKEFDTVVFSAPVNVV 73

Query: 259 -NPYVTQKGVEYIAICDKRD 277
             P  TQ G   + +  ++D
Sbjct: 74  QGPVKTQFGYHLLEVTSRQD 93


>gi|238765154|ref|ZP_04626087.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia
           kristensenii ATCC 33638]
 gi|238696644|gb|EEP89428.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia
           kristensenii ATCC 33638]
          Length = 99

 Score = 63.2 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 1/76 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           +K+  D               +KF++     + G      + D+ P F + +        
Sbjct: 21  EKQANDILAQLNNGANFQELAKKFSNCPSKRNGGDLGEFNKGDMVPAFDKAVFSCELLQP 80

Query: 258 TNPYVTQKGVEYIAIC 273
             P  TQ G   I + 
Sbjct: 81  YGPVKTQFGYHIIKVL 96


>gi|296313595|ref|ZP_06863536.1| hypothetical protein NEIPOLOT_00406 [Neisseria polysaccharea ATCC
           43768]
 gi|296839829|gb|EFH23767.1| hypothetical protein NEIPOLOT_00406 [Neisseria polysaccharea ATCC
           43768]
          Length = 288

 Score = 63.2 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/305 (10%), Positives = 79/305 (25%), Gaps = 25/305 (8%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK----INGE 71
           +    +     +    S  +         T+NG+ I    I  ++A  + +      + +
Sbjct: 1   MKAKILTSAALLACSGSLFAQT-----LATVNGQKIDSSVIDAQVAAFRAENSRAEDSPQ 55

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           L +  + + I  T+  QE+++  +   +   +      A       +             
Sbjct: 56  LRRALLNQEITNTVVAQEVKRLKLDRSAEFKDMLAKLRAEAEKSGDDK---------KPS 106

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                      +                E +  A    +         ++         +
Sbjct: 107 FKTVWQAVEYGLNGRAYALHIAKTQPVSEQDAKAAYDNISGFYKGTQEVQLGEILTDKEE 166

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
              +     + K   ++ L+     +  ++       V +       E  + P +Q +  
Sbjct: 167 NAKKAVAGLKAKKGFDAVLKQYSLNDHTKQTGKPDGYVPLKDL----EQGVPPLYQAIKD 222

Query: 252 KSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
             +   T  P           + D+RD+         +  Q T     +     V  L  
Sbjct: 223 LKKGEFTATPLKNGDFYGVYYVNDRRDVKV--PSFDEMKEQLTGDLQAERIDRAVGALLD 280

Query: 311 NAIIH 315
            A I 
Sbjct: 281 KADIK 285


>gi|317046370|ref|YP_004114018.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. At-9b]
 gi|316947987|gb|ADU67462.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. At-9b]
          Length = 93

 Score = 63.2 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 9/76 (11%), Positives = 21/76 (27%), Gaps = 1/76 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           + + K       +        +K ++     + G      +  + P F + +        
Sbjct: 15  EAKAKALLAQLEKGANFQQLAKKHSTCPSGRNGGDLGEFRKGQMVPAFDKAVFSCPLLQP 74

Query: 258 TNPYVTQKGVEYIAIC 273
             P  T  G   I + 
Sbjct: 75  YGPVKTAFGYHIIKVL 90


>gi|160902059|ref|YP_001567640.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Petrotoga mobilis
           SJ95]
 gi|160359703|gb|ABX31317.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Petrotoga mobilis
           SJ95]
          Length = 667

 Score = 63.2 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/246 (11%), Positives = 72/246 (29%), Gaps = 8/246 (3%)

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT--GLSAEDFSSFLDKQGI 129
           L+   V  L  E + +   E+S +   +  VN                ++ +     Q  
Sbjct: 103 LDNQVVDLLFDEKIVRYYAEQSDLLPSNEEVNNQINTQVDQYITQYKFDETNWNNMLQYY 162

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
           G     + + I  +   V  +       +    +             E +          
Sbjct: 163 GSEQNIRNILISGLQQTVETDLINNAVKDAVASVSREDALAYIEQNFESIKNDYEEVRVQ 222

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQN 248
           + L +       IK+   +        +    ++    +  + G+  ++   +    F++
Sbjct: 223 HILLSDEATANSIKEMIATGE--ITFEDAASLYSLDTSNATNSGEIGWIKHGNYEQSFED 280

Query: 249 LLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYV 305
            +          P  T +G   I + DK+  +   +I L   + A+   T   +    ++
Sbjct: 281 AVFNGQVGEIIGPVQTSEGFHLIRVLDKKIFEKPEDIFLYVDVYAEVESTVQGQKYDNWL 340

Query: 306 KKLRSN 311
              + +
Sbjct: 341 SNYKES 346


>gi|152972767|ref|YP_001337913.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|206579081|ref|YP_002241160.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae 342]
 gi|238892378|ref|YP_002917112.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262040912|ref|ZP_06014138.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288937798|ref|YP_003441857.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Klebsiella variicola
           At-22]
 gi|330012128|ref|ZP_08307290.1| peptidyl-prolyl cis-trans isomerase [Klebsiella sp. MS 92-3]
 gi|150957616|gb|ABR79646.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|206568139|gb|ACI09915.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae 342]
 gi|238544694|dbj|BAH61045.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259041801|gb|EEW42846.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288892507|gb|ADC60825.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Klebsiella variicola
           At-22]
 gi|328533943|gb|EGF60602.1| peptidyl-prolyl cis-trans isomerase [Klebsiella sp. MS 92-3]
          Length = 93

 Score = 63.2 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 1/81 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +K   D  E            +K +        G      +  + P F + +    + 
Sbjct: 13  KEEKLALDLLEQLKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPEL 72

Query: 256 NTTNPYVTQKGVEYIAICDKR 276
             T P  TQ G   I +  ++
Sbjct: 73  EPTGPLHTQFGYHIIKVLYRK 93


>gi|167898198|ref|ZP_02485600.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 7894]
 gi|167922759|ref|ZP_02509850.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei BCC215]
          Length = 265

 Score = 63.2 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 44/174 (25%), Gaps = 5/174 (2%)

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           ++  +                        R  ++                 +++  +   
Sbjct: 79  LLARELTPLPEPTRDACERYYLNHAARFRRCDIVYASHILFAVTDATPLAPLRREAEATL 138

Query: 207 ESRLRLPKDCNK-LEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKKSQNNTTNPYVT 263
              L  P+       + ++       G    LL  D  P+F                  T
Sbjct: 139 ARVLAEPQTFEARARELSNCPSAQVGGSLGQLLRGDSVPEFDAAVFDTTDSGVLPRLVNT 198

Query: 264 QKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           + G   + I  +   D     A+ A ++A        K   +YV  L S A I 
Sbjct: 199 RFGFHIVRIERRVPGDPVPFDAVAAEIAAFLAERVRHKAIQQYVTILASGARIE 252


>gi|78485939|ref|YP_391864.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomicrospira
           crunogena XCL-2]
 gi|78364225|gb|ABB42190.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomicrospira
           crunogena XCL-2]
          Length = 102

 Score = 63.2 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 11/81 (13%), Positives = 22/81 (27%), Gaps = 1/81 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +      ++             + +        G         + P+F Q +   +  
Sbjct: 22  KTEAECLALKQQINDFETFDQLAREHSLCPSGRVGGDLGIFGPGKMVPEFDQVVFNDAIG 81

Query: 256 NTTNPYVTQKGVEYIAICDKR 276
               P  TQ G   I I D++
Sbjct: 82  EVHGPVPTQFGYHLIWITDRK 102


>gi|154494369|ref|ZP_02033689.1| hypothetical protein PARMER_03724 [Parabacteroides merdae ATCC
           43184]
 gi|154085813|gb|EDN84858.1| hypothetical protein PARMER_03724 [Parabacteroides merdae ATCC
           43184]
          Length = 532

 Score = 63.2 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 13/150 (8%), Positives = 44/150 (29%), Gaps = 4/150 (2%)

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
                +       +   ++    D+    +     R ++               ++++S 
Sbjct: 224 KIHSRRRNPGLVRVAHVLIPFEKDSVKFGEAETLARAEEVYRKAKDGADFAMLAKEYSSD 283

Query: 226 I-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLGGEI 282
                  G+       ++   F+       +    + P  T+ G   I + +K+ +    
Sbjct: 284 AGSAKRGGELPAFGVGEMVEPFEVAAFALNTPGELSRPVKTRFGYHIIKLIEKKGIPSFD 343

Query: 283 ALKAYLSAQNTPTKIE-KHEAEYVKKLRSN 311
             K   S Q    +   ++   + ++++  
Sbjct: 344 DKKKAWSRQMAQGERNFEYYGAFDERMKKE 373



 Score = 40.8 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/258 (8%), Positives = 58/258 (22%), Gaps = 40/258 (15%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           +L++  +   ++  +      +  T+ G+ I   +                         
Sbjct: 10  LLVLSLVFACMTGNAQVSVDSVVMTVAGKQIPLDEF------------------------ 45

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
                     + S +          +V+  +N  L   +       +             
Sbjct: 46  -----IFIAQKNSEVNLSDRKSVNAYVELFKNFKLKVAEAEDLGLDKTKAFKDELDSYRA 100

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           Q     +          + + E  A +           L   +         ++   V +
Sbjct: 101 QLTSSYL---------SDKDGEEAAVRAVYDRYGEVLELSHILFRLPQRTLSKDTVPVYQ 151

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ--YLLESDLHPQFQNLLKKSQNNTT 258
           +  +A E            ++      +    +     L    +             + +
Sbjct: 152 KAIEAYERIQAGEDFAAVGKELKDADKENVGYEYVHCLLPMQTVKAFENVAYSLPVGSVS 211

Query: 259 NPYVTQKGVEYIAICDKR 276
            P  T  G   I I  +R
Sbjct: 212 LPVRTTMGFHIIKIHSRR 229


>gi|119945608|ref|YP_943288.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas
           ingrahamii 37]
 gi|119864212|gb|ABM03689.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas
           ingrahamii 37]
          Length = 93

 Score = 63.2 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 11/80 (13%), Positives = 26/80 (32%), Gaps = 1/80 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           ++   D ++         +  +K +S       G         + P+F   +      + 
Sbjct: 14  EESCLDIKQQIEAGTDFADLAKKHSSCPSGAQGGALGEFGPGMMVPEFDAVVFSADVGSV 73

Query: 258 TNPYVTQKGVEYIAICDKRD 277
             P  TQ G   + +  ++D
Sbjct: 74  QGPVKTQFGYHLLEVTSRQD 93


>gi|260654850|ref|ZP_05860338.1| putative fibrous sheath CABYR-binding protein [Jonquetella anthropi
           E3_33 E1]
 gi|260630565|gb|EEX48759.1| putative fibrous sheath CABYR-binding protein [Jonquetella anthropi
           E3_33 E1]
          Length = 570

 Score = 63.2 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/328 (10%), Positives = 86/328 (26%), Gaps = 23/328 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSY------KSWAMSSRIRTTINGEVITDGDISK 58
           + TSL   IK +   F++     +P++        K+  +   +  +I+G      ++ K
Sbjct: 8   ILTSLRTQIKWILVAFLVAFGLSIPLMYGVGRHDEKNKGVRDHVVASIDGREYKLSELHK 67

Query: 59  RIALLKLQKINGELE-------KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
            +     +      +       +  +  L  +    + I++ GI      VN    Q   
Sbjct: 68  AMQGFAERNNIKLTQENLPAVYQQTLDSLATQIALDKAIKERGIEPTEAQVNEQLKQLEV 127

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
                    ++     G      K  LA       ++  +      + +         + 
Sbjct: 128 QYVTKEAFLANLRAT-GSSLEQVKANLAHDLAVRQLLTQESESATVDDQQVKSLYDLFVT 186

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
                 Y    V     + + +              +           +K        + 
Sbjct: 187 MKQPMVYRPSGVEGHHAEFRTKEAAEA------FLAAVKAGEDWKTAADKAGDNKIGSTD 240

Query: 232 GKAQ-YLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK--RDLGGEIALKAYL 288
           GK   ++ ++D+  +F  L      + T   +                        +  L
Sbjct: 241 GKMTSFVSDTDVKERFPFLGTMKDGDYTLQQIADGDFLVFRRVGATAEKTLTFEEAQPQL 300

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            A          + E++  L+    +  
Sbjct: 301 KALALNQARMVKQQEFLTALKDKVKVEI 328


>gi|110597632|ref|ZP_01385917.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
           ferrooxidans DSM 13031]
 gi|110340752|gb|EAT59229.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
           ferrooxidans DSM 13031]
          Length = 702

 Score = 63.2 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 11/102 (10%), Positives = 26/102 (25%), Gaps = 2/102 (1%)

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGK 233
                   +L             V++      +         +   K+++     ++ G 
Sbjct: 344 QPVARASHILLRFNPASRAEVQKVRELSLLISQQLQAGVPFESLARKYSADPGSALNGGD 403

Query: 234 AQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICD 274
             +     + P+F              P  TQ G+  I +  
Sbjct: 404 IGWFSRERMVPEFAAAVFNARPGAVIGPVQTQFGLHIIKVTG 445



 Score = 47.0 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 2/74 (2%)

Query: 244 PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY--LSAQNTPTKIEKHE 301
           P  + +        ++P  T  G   + +  +    G         ++ Q    K E+  
Sbjct: 625 PLVEAMSGMVVGKLSSPVKTTDGYALVLLTKRALPEGLDPKAEKVTVTPQLLRAKQEQLF 684

Query: 302 AEYVKKLRSNAIIH 315
           AE+   +R NA + 
Sbjct: 685 AEFFAAVRKNAKVE 698


>gi|304310966|ref|YP_003810564.1| Probably peptidyl-prolyl CIS-trans isomerase C [gamma
           proteobacterium HdN1]
 gi|301796699|emb|CBL44911.1| Probably peptidyl-prolyl CIS-trans isomerase C [gamma
           proteobacterium HdN1]
          Length = 264

 Score = 63.2 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/275 (10%), Positives = 77/275 (28%), Gaps = 42/275 (15%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             ++NG  I +  I   +A     +   +  + A   L++  L  Q+    G+  D    
Sbjct: 15  LVSVNGVEIPEAAIKAEMAAEYADEERVKAWEKAATALVIRELLLQQASLQGLEGDEA-- 72

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                              S+  +    +    +        PD+++             
Sbjct: 73  -ECIDTLLSRNIEVPTADESYCRRFFEENPARFRS-------PDLIEAR----------- 113

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                               +  + P +        ++ ++  E  R    +      ++
Sbjct: 114 ------------------HILFAAAPGDWDARDLAQEEAVRIIERLRATPEQFAEYANEY 155

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN-PYVTQKGVEYIAICDK--RDLG 279
           ++       G    L +    P+F++ +          P  ++ G   + I  +      
Sbjct: 156 SACPSREEGGSLGQLSKGSTVPEFESAIFGLPTGLHGTPIESRYGYHVVWIDHRVDGQPL 215

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
               +K  ++         +  ++Y++ L  +A I
Sbjct: 216 PYEHVKEGVARYLEDNVFRQGLSQYLQLLAGSATI 250


>gi|238789352|ref|ZP_04633138.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia
           frederiksenii ATCC 33641]
 gi|238794291|ref|ZP_04637904.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia intermedia
           ATCC 29909]
 gi|238722495|gb|EEQ14149.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia
           frederiksenii ATCC 33641]
 gi|238726375|gb|EEQ17916.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia intermedia
           ATCC 29909]
          Length = 98

 Score = 63.2 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 1/76 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           +K+  D               +KF++     + G      + D+ P F + +        
Sbjct: 20  EKQANDILAQLNNGANFQELAKKFSNCPSKRNGGDLGEFNKGDMVPAFDKAVFSCELLQP 79

Query: 258 TNPYVTQKGVEYIAIC 273
             P  TQ G   I + 
Sbjct: 80  YGPVKTQFGYHIIKVL 95


>gi|73538831|ref|YP_299198.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
           JMP134]
 gi|72122168|gb|AAZ64354.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
           JMP134]
          Length = 250

 Score = 62.8 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/275 (10%), Positives = 74/275 (26%), Gaps = 45/275 (16%)

Query: 44  TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            T+NG  +TD DI + +   +  +                           +   S  + 
Sbjct: 3   VTVNGVELTDDDIEREMDQHRDARNPA-----------------------HMATVSAILR 39

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
                 A   G++  D         +  +      A +S       +             
Sbjct: 40  RLMRTEAERLGIAGGDTDDDALALALLAHEAPVPDADESSCRRHYDSR------------ 87

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
                  +        +  +LF +      +    +  ++     +       +  +  +
Sbjct: 88  -----PDRFREGEWVEVEHILFQVTPRVPLD-ALREVALQTLALIKGDPSSFASHAQALS 141

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ--NNTTNPYVTQKGVEYIAICDKRDLG-- 279
           +       G+   +   +  P+F+  +  +           T+ G+  + + D+ D    
Sbjct: 142 NCPSGAGGGRLGRVFRGETAPEFERAVFSAPVQGLLPQLVETRFGLHIVRVLDRCDGTRL 201

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
               ++A ++   T    ++   +Y   L   A I
Sbjct: 202 PFDMVRADIAHALTAAARDRAWKQYASLLIGRASI 236


>gi|54297774|ref|YP_124143.1| hypothetical protein lpp1825 [Legionella pneumophila str. Paris]
 gi|53751559|emb|CAH12977.1| hypothetical protein lpp1825 [Legionella pneumophila str. Paris]
          Length = 624

 Score = 62.8 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/233 (9%), Positives = 67/233 (28%), Gaps = 8/233 (3%)

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
                EI++    +       +    +      A+     +       +         ++
Sbjct: 167 FALSDEIKRFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTSEQVTL 226

Query: 144 WPDVVK-NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
              ++  +D   +      +I +  ++ K+  +     R         +   +       
Sbjct: 227 DYVLLSMHDIKSQIKISPDQIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIK 286

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDV-----SIGKAQYLLESDLHPQFQNLLKKSQNNT 257
           + A+E    L K   + +K+ +   D      + G   ++                    
Sbjct: 287 QKADEVYSDLKKHPEQFDKYVASKSDDKLSITNKGILPWITGGQNEYGRALSNLTRPGQI 346

Query: 258 TNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKL 308
           + P  T+ G E   +   + +  +    ++  +  Q T    +   A+ +++L
Sbjct: 347 SIPVQTKYGYEIFKLIAYKPVTTKSLQEVENIMKDQLTSDMAQAKYAQVLEQL 399



 Score = 60.8 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/319 (10%), Positives = 74/319 (23%), Gaps = 24/319 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+   +   +  L    + I F +  +  Y      S  +  +N + IT        
Sbjct: 1   MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSRQISDAKVIVNDKPITMQAFETNY 60

Query: 61  ALLKLQK--------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
              + Q+            L+   + ++I   +  Q   K G        N   VQ  + 
Sbjct: 61  RRTRAQQDLPQMTAADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQANAAIVQIPQF 120

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
                     +           + +         + +  F     +  +     +     
Sbjct: 121 QEDGHFSAQRYQQALSGALFTPETFQNEVRQGMLLNQQRFAFMGTSFALSDEIKRFVRLY 180

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
           +  R+Y     L    D   Q     +  IK       +      ++      +    I 
Sbjct: 181 MQTRDYDY---LTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTSEQVTLDYVLLSMHDIK 237

Query: 233 KAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN 292
               +    +   ++               T        I            +  +  + 
Sbjct: 238 SQIKISPDQIKSYYEENKSNYL--------TPAQWRVAHILFAVPENATKEEQDSIKQKA 289

Query: 293 TP-----TKIEKHEAEYVK 306
                   K  +   +YV 
Sbjct: 290 DEVYSDLKKHPEQFDKYVA 308


>gi|302804512|ref|XP_002984008.1| hypothetical protein SELMODRAFT_423141 [Selaginella moellendorffii]
 gi|300148360|gb|EFJ15020.1| hypothetical protein SELMODRAFT_423141 [Selaginella moellendorffii]
          Length = 148

 Score = 62.8 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 12/103 (11%), Positives = 31/103 (30%), Gaps = 2/103 (1%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
                R VL             +Q    +  +      +      +F+        G   
Sbjct: 47  TYVKARHVLCEKQGRINDAYKKLQDGWLNNGDKVP-PAEFAKVAAEFSECPSGKKGGDLG 105

Query: 236 YLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRD 277
           +     +   FQ +   +   +T+ P+ +  G  +I +  +++
Sbjct: 106 WFPRGKMAGPFQEVAFSTPVGSTSAPFKSTHGYHFILVEGRKN 148


>gi|149909113|ref|ZP_01897771.1| peptidyl-prolyl cis-trans isomerase C [Moritella sp. PE36]
 gi|149807864|gb|EDM67809.1| peptidyl-prolyl cis-trans isomerase C [Moritella sp. PE36]
          Length = 92

 Score = 62.8 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 9/78 (11%), Positives = 25/78 (32%), Gaps = 1/78 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNT 257
           + +  + +          +  +K ++       G         + P+F  ++  +  N  
Sbjct: 14  EAKCNELKAQIEAGADFADVAKKNSNCPSAAKGGDLGKFGPGMMVPEFDKVVFSAPLNTV 73

Query: 258 TNPYVTQKGVEYIAICDK 275
             P  TQ G   + +  +
Sbjct: 74  QGPVKTQFGYHLLDVTSR 91


>gi|189499340|ref|YP_001958810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
           phaeobacteroides BS1]
 gi|189494781|gb|ACE03329.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
           phaeobacteroides BS1]
          Length = 701

 Score = 62.8 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 11/96 (11%), Positives = 31/96 (32%), Gaps = 2/96 (2%)

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLES 240
            +L       +  +   +   +   +      K  +   +++       + G   +   +
Sbjct: 349 HILIPFSKGDVSGEKEARGLAEKIMQEIRSGKKFADLAMQYSQDPGSAANGGDLGWFSRT 408

Query: 241 DLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDK 275
            + P+F  +  + +      P  TQ G+  I +  K
Sbjct: 409 AMVPEFAQVVFRAATGTLAGPVETQYGLHIIKVTGK 444



 Score = 39.7 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 2/73 (2%)

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEA 302
             + ++       + P   + G   I +  K   D     + KA L       K E+   
Sbjct: 624 LIEAIIGMEPGTVSKPVAVKGGRALIVLRGKAYPDTADLESEKARLLPMLEKVKQERFIQ 683

Query: 303 EYVKKLRSNAIIH 315
           +Y    R  A I 
Sbjct: 684 DYFTAERRAATIE 696


>gi|255645973|gb|ACU23475.1| unknown [Glycine max]
          Length = 146

 Score = 62.8 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 9/103 (8%), Positives = 31/103 (30%), Gaps = 2/103 (1%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
                R +L        +    + +        ++   +     ++++        G   
Sbjct: 45  TYVKARHILCEKQGKINEAYKKL-QDGWLCNGDKVPPAEFAKIAQEYSECPSGKKGGDLG 103

Query: 236 YLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRD 277
           +     +   FQ++   +    T+ P+ +  G   I    +++
Sbjct: 104 WFPRGKMAGPFQDVAFNTPVGATSAPFKSTHGYHIILSEGRKN 146


>gi|239908536|ref|YP_002955278.1| peptidyl-prolyl cis-trans isomerase [Desulfovibrio magneticus RS-1]
 gi|239798403|dbj|BAH77392.1| peptidyl-prolyl cis-trans isomerase [Desulfovibrio magneticus RS-1]
          Length = 650

 Score = 62.8 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 57/166 (34%), Gaps = 7/166 (4%)

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ-GFVQKRIKDAEESRLR 211
             +  + ++E      + K     +  +R +L  +P +  Q      +KR+K   +   +
Sbjct: 242 PAEITDTDIEADFKANQKKYERPEQVRVRHILMMLPPDAPQEVVDAAEKRLKAMADDVRK 301

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK----SQNNTTNPYVTQKGV 267
                  + K  +    +      +L +  L  +F    +K     ++  ++P  T  G+
Sbjct: 302 GKDFATLIPKDPANADGIIGEDWAWLPKGSLPKEFAPFEEKAFTLKKDEVSDPVRTSLGL 361

Query: 268 EYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             I   +K+  G      +K  + A     +      + +  ++  
Sbjct: 362 HLIQGGEKQASGQRALAEVKDEIRADLAEQRAADKLTKSLDAIQEK 407



 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/326 (9%), Positives = 79/326 (24%), Gaps = 42/326 (12%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +      +   +    ++I+F    + ++        +  T+NG+ I   D  K+ 
Sbjct: 1   MLDPMRKYAQSWGIKIVFGLIIIVFVFWGVGNFNGDRA--TVLATVNGQPILIKDYEKQY 58

Query: 61  ALLKLQKINGE------------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
                   N                      ++   L + + +  GI   +  +     +
Sbjct: 59  QENLRLVKNKNPNVTDKDLQDGGFRWQVFTNMVTTKLLEDQAKTLGIAVTAGELRSEIAK 118

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
                  S +  +   +     ++              ++        G       A  +
Sbjct: 119 IPAFQNESKQFDAKRYENLLKANDVSPGEFEADF-RQQLLLEKLAAFVGLPAQVAEAEAR 177

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
            + +    + +I+ + F+  D         ++  K  E  +            F      
Sbjct: 178 SIFDFMREQAIIKYIPFAATDFTKGVTISDEQIAKYYEARKDEFATPAQVKIDFV----- 232

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP-YVTQKGVEYIAICDKRDLGGEIALKAY 287
                           +F           T+                K+    E     +
Sbjct: 233 ----------------EFTPKAMAKPAEITDTDIEADF-----KANQKKYERPEQVRVRH 271

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAI 313
           +     P   ++      K+L++ A 
Sbjct: 272 ILMMLPPDAPQEVVDAAEKRLKAMAD 297


>gi|32266195|ref|NP_860227.1| hypothetical protein HH0696 [Helicobacter hepaticus ATCC 51449]
 gi|32262245|gb|AAP77293.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 264

 Score = 62.8 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 91/285 (31%), Gaps = 33/285 (11%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKS 93
               + + +   +NG  IT  +I+       LQ      ++ A+  LI E LK  EIE+ 
Sbjct: 4   AYGEVIAGVAIRVNGHAITLYEIA------SLQSHLKISKQAAIDMLINERLKDDEIERF 57

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
            I+ +   ++      A N  LS ++F        +    ++  +  Q    ++++    
Sbjct: 58  KISIEDFKIDEEIALLAANANLSKDEFLR-KATHTMSLQEYRTQIKKQLQTKELMQRILA 116

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                   E        ++        +  +               +  K   +   ++ 
Sbjct: 117 SNISISS-EDELLTYYTRHKKEFLIPSQVRVVRYFSQTDNALQKAIQSPKQNIKGVQKVN 175

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVT--QKGVEYIA 271
           +                      +  S L+PQ   +   + NN   P +T    G     
Sbjct: 176 ET---------------------IALSSLNPQIAQVFIHTPNNEFTPVLTTGGNGFVSFL 214

Query: 272 ICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           + ++           K  ++ +    K +   AE+  K+RS+A I
Sbjct: 215 VKERLGETPINFEEAKPLINQKIMAQKEQSIIAEHFNKIRSSANI 259


>gi|251787801|ref|YP_003002522.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya zeae
           Ech1591]
 gi|271502416|ref|YP_003335442.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya dadantii
           Ech586]
 gi|247536422|gb|ACT05043.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya zeae
           Ech1591]
 gi|270345971|gb|ACZ78736.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya dadantii
           Ech586]
          Length = 93

 Score = 62.8 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +++  D      +        +K ++     + G      + D+ P F + +      
Sbjct: 13  DTEQQATDILAQLEKGADFQQLAKKHSTCPSKRNGGDLGEFRKGDMVPDFDKAVFSCELL 72

Query: 256 NTTNPYVTQKGVEYIAIC 273
               P  TQ G   I + 
Sbjct: 73  KPFGPVKTQFGYHIIKVL 90


>gi|195620008|gb|ACG31834.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Zea mays]
          Length = 151

 Score = 62.8 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 9/103 (8%), Positives = 29/103 (28%), Gaps = 2/103 (1%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
                R VL        +    +Q    +  +      +     ++++        G   
Sbjct: 50  TYVKARHVLCEKQGKINEAYKKLQDGWLNNGDKVP-PAEFAKVAQEYSECPSGKKGGDLG 108

Query: 236 YLLESDLH-PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
           +     +  P  +      +   + P+ +  G  +I    +++
Sbjct: 109 WFPRGKMAGPFQEVAFNTPEGTVSAPFKSTHGYHFILCEGRKN 151


>gi|163793237|ref|ZP_02187213.1| Parvulin-like peptidyl-prolyl isomerase [alpha proteobacterium
           BAL199]
 gi|159181883|gb|EDP66395.1| Parvulin-like peptidyl-prolyl isomerase [alpha proteobacterium
           BAL199]
          Length = 626

 Score = 62.8 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/387 (8%), Positives = 86/387 (22%), Gaps = 77/387 (19%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEV-ITDGDISKR 59
           M   + + ++     +    +++ F I  I        + ++  ++  E   T  +++  
Sbjct: 1   MLQFIRSKVTSIFVKILFVMLIVSFAIWGIGDVFFGNPAGKVAISVGDETRFTTQEVAGE 60

Query: 60  IALLK---------LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
               +          Q I   +    +  ++ E L         ++  ++ V  F     
Sbjct: 61  FETARRRIGVPLTVEQAIQLGMLDQVMNNMVTEGLMIAATRSLDLSVGTDRVAEFVRSRF 120

Query: 111 RNTGLSAEDFSSFL--DKQGIGDNHFKQYLAIQSIWPDVV-------------------- 148
            +     +           G  +  F   L        ++                    
Sbjct: 121 TDQTGQFDRARYQTTLANNGWSEEEFILRLRQDFARRQLIDALTAADAAPEAAVDRVFAY 180

Query: 149 --KNDFMLKYGNL---------EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGF 197
             +                     +   N     + +  E      +     +       
Sbjct: 181 RQERRIAEVVTIPAAAVPEPTAPDDAALNSYFEASKSGYEEPEYRSIAWAQVSPAAVAKT 240

Query: 198 V------------QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG------------- 232
           +            ++  + A+  R  + +   + E  +   H    G             
Sbjct: 241 LDIPEGDVRAAYDERADQLAKPERREVQQILFETEDASKAAHARIAGGEDFVAVAKDTTG 300

Query: 233 ------KAQYLLESDLHP-QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIA 283
                     L    L       +   +QN  + P  +  G     +   +         
Sbjct: 301 ADEAALDLGALARDGLPTGTADAVFALAQNAVSEPVKSGFGWHLFRVRSIQPGTTVTYEE 360

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKKLRS 310
            K  +  +    +      E   KL  
Sbjct: 361 AKGRIRDELAHDRALDVVYETANKLED 387


>gi|256841003|ref|ZP_05546510.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298375772|ref|ZP_06985728.1| ppic-type ppiase domain-containing protein [Bacteroides sp. 3_1_19]
 gi|256736846|gb|EEU50173.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298266809|gb|EFI08466.1| ppic-type ppiase domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 533

 Score = 62.8 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 13/150 (8%), Positives = 44/150 (29%), Gaps = 4/150 (2%)

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-S 224
                K    R ++   ++    D+ +Q+      + +   +            ++++  
Sbjct: 229 KVHSRKPNPGRIHVAHILIAFPKDSAIQDSSAFLAKAQAIYKQVQEGADFGELAKEYSGD 288

Query: 225 KIHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLGGEI 282
                  G   +    ++   F+          + +    T+ G   I + DK+      
Sbjct: 289 AASAKKEGVLPWFGVGEMVQPFEQAAFALSKPGDLSEVVETRFGYHIIKLIDKKGRPSFE 348

Query: 283 ALKAYLSAQNTPTKIE-KHEAEYVKKLRSN 311
             +  LS +    +   +    +  +++  
Sbjct: 349 EEEKALSRRMGQGERNFELYKAFDDRMKKE 378



 Score = 42.7 bits (98), Expect = 0.063,   Method: Composition-based stats.
 Identities = 29/274 (10%), Positives = 63/274 (22%), Gaps = 40/274 (14%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +   +K      +LI   +   V+  +   S  +  T+ G+ +   +             
Sbjct: 3   IRAMVKEFLMKKLLISLGVFACVTVNAQTASDSVVMTVAGKQVPLSEF------------ 50

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
                                 +   +   +      +V+  +N  L   +  S    Q 
Sbjct: 51  -----------------IFIAEKNGEVDLSNTKSVKNYVELFKNFKLKVAEAESLGIDQT 93

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                       Q I   +          + E E  A +           L   +     
Sbjct: 94  SSFKSELDGYRAQLIDSYM---------SDKEGEKAAARAVYDRGDHSVELTHILFRLPE 144

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY--LLESDLHPQF 246
               ++   V +      E   +        +  A K  +    +     L    L    
Sbjct: 145 KTVSKDTVAVYQEAMRVYERLQKGEDMETVGKALAEKDKEHVACEYVRCLLPMQSLKVFE 204

Query: 247 QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
                      + P  T+ G   I +  ++   G
Sbjct: 205 DAAYSLPIGVVSEPVRTKLGFHLIKVHSRKPNPG 238


>gi|261401822|ref|ZP_05987947.1| conserved hypothetical protein [Neisseria lactamica ATCC 23970]
 gi|269208029|gb|EEZ74484.1| conserved hypothetical protein [Neisseria lactamica ATCC 23970]
          Length = 288

 Score = 62.8 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/305 (10%), Positives = 80/305 (26%), Gaps = 25/305 (8%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK----INGE 71
           +    +  +  +    S  +         T+NG+ I    I  ++A  + +      + +
Sbjct: 1   MKAKILTSVALLACSGSLFAQT-----LATVNGQKIDSSVIDAQVAAFRAENSSAEDSPQ 55

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           L +  + + I  T+  QE+++  +   +   +      A       +             
Sbjct: 56  LRRALLNQEITHTVVAQEVKRLKLDRSAEFKDMLAKLRAEAEKSGDDK---------KPS 106

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                      +                E +  A    ++        ++          
Sbjct: 107 FKTVWQAVEYGLNGRAYALHIAKTQPVSEQDAKAAYDNIRGFYKGTQEVQLGEILTDKED 166

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
              +     + K   ++ L+     +  ++       V +       E  + P +Q +  
Sbjct: 167 NAKKAVAGLKAKKGFDAVLKQYSLNDHTKQTGKPDGYVPLKDL----EQGVPPLYQAIKD 222

Query: 252 KSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
             +   T  P           + D+R++         +  Q T     +     V  L  
Sbjct: 223 LKKGEFTATPLKNGDFYGVYYVNDRREVKV--PSFDEMKEQLTGDLQAERIDRAVGALLG 280

Query: 311 NAIIH 315
            A I 
Sbjct: 281 KADIK 285


>gi|293602043|ref|ZP_06684498.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
           43553]
 gi|292819573|gb|EFF78599.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
           43553]
          Length = 93

 Score = 62.8 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 8/81 (9%), Positives = 25/81 (30%), Gaps = 1/81 (1%)

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NN 256
            + +  + + +           ++ +S       G         +  +F  ++  +    
Sbjct: 13  TEAKCNELKTAIENGADFAQVAKENSSCPSSRDGGNLGTFGPGQMVKEFDTVVFSAPVGV 72

Query: 257 TTNPYVTQKGVEYIAICDKRD 277
              P  TQ G   + +  ++D
Sbjct: 73  VQGPVKTQFGYHLVEVTSRQD 93


>gi|207738621|ref|YP_002257014.1| ppic-type peptidyl-prolyl cis-trans isomerase protein [Ralstonia
           solanacearum IPO1609]
 gi|206591989|emb|CAQ58895.1| ppic-type peptidyl-prolyl cis-trans isomerase protein [Ralstonia
           solanacearum IPO1609]
          Length = 268

 Score = 62.8 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/286 (11%), Positives = 75/286 (26%), Gaps = 54/286 (18%)

Query: 42  IRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           +   +NG  +T   + + IA    Q    ++ +   Q+LI   L +Q+  K+        
Sbjct: 22  VIALVNGTQVTQAQLDRAIAQSGAQANP-QIAQALKQQLIARELFRQQAAKNPAYEKLPA 80

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
           V                                 Q      I    +K++        E 
Sbjct: 81  VKQAM-----------------------------QEAHDAVITQAWLKDNIKPAPITDEQ 111

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
                   + ++  +EY  R +         Q    +++                   ++
Sbjct: 112 VKARYDAIVASLGDKEYKARVIQLGDDVTAAQVLELLKQ-----------GGDFAKLAQQ 160

Query: 222 FASKIHDVSIGKAQYLLESD-----------LHPQFQNLLKKSQNNTTNPYVTQKGVEYI 270
           +++  + V  G   ++               L    +         +T P         +
Sbjct: 161 YSTAPNKVRGGDMDWVSFKVPAEEGKTQNLPLPLAREIAALGIGATSTAPVEVGSQRYIV 220

Query: 271 AICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            +   R   +     +K  +       ++E+   + V  L   A +
Sbjct: 221 KVEAARPTQVPAYDTVKPAIRQALESAELERVTVQVVGGLLKQAKV 266


>gi|194292769|ref|YP_002008676.1| peptidyl-prolyl cis-trans isomerase [Cupriavidus taiwanensis LMG
           19424]
 gi|193226673|emb|CAQ72624.1| Peptidyl-prolyl cis-trans isomerase [Cupriavidus taiwanensis LMG
           19424]
          Length = 250

 Score = 62.8 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 13/173 (7%), Positives = 46/173 (26%), Gaps = 5/173 (2%)

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           + +     +          +    +           +LF +      +    +   +   
Sbjct: 66  LAREAATPEADEASCRRHYDSHPGRFREGEWVEADHILFQVTPRVPLD-ALREVAAQTLA 124

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQ 264
             R       +     ++     + G+   +   +  P+F+  L   +          ++
Sbjct: 125 LVRGDPASFAHHARALSNCPSGANGGRLGRVFRGETAPEFERALFAAQQDGVLPQLLESR 184

Query: 265 KGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            G+  + I ++          ++  ++        ++   +Y   L   A I 
Sbjct: 185 YGLHIVRILERCPGTRLPFETVRGEIARALGAAARDRAWKQYASLLIGRARIE 237


>gi|64213910|gb|AAY41234.1| putative peptidyl-prolyl cis-trans isomerase [Gossypium hirsutum]
          Length = 143

 Score = 62.8 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 9/103 (8%), Positives = 31/103 (30%), Gaps = 2/103 (1%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
                R +L        +    + +    +   ++   +     ++++        G   
Sbjct: 42  TYVKARHILCEKQGKINEAYKKL-QDGWLSNGDKVPPAEFAKVAQEYSECPSGKKGGDLG 100

Query: 236 YLLESDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAICDKRD 277
           +     +   FQ +   +    T+ P+ +  G   I    +++
Sbjct: 101 WFPRGKMAGPFQEVAFNTVIGATSAPFKSTHGYHIILCEGRKN 143


>gi|290513194|ref|ZP_06552556.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella sp. 1_1_55]
 gi|289774405|gb|EFD82411.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella sp. 1_1_55]
          Length = 93

 Score = 62.8 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 1/81 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +K   D  E            +K +        G      +  + P F + +    + 
Sbjct: 13  KEEKLALDLLEQLKGGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPEL 72

Query: 256 NTTNPYVTQKGVEYIAICDKR 276
             T P  TQ G   I +  ++
Sbjct: 73  EPTGPLHTQFGYHIIKVLYRK 93


>gi|307297956|ref|ZP_07577760.1| conserved hypothetical protein [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916042|gb|EFN46425.1| conserved hypothetical protein [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 339

 Score = 62.8 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 102/336 (30%), Gaps = 35/336 (10%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDG-----------DISKRI- 60
           +K      +L++   V + S       + I   +NGE+IT             +ISKRI 
Sbjct: 1   MKKFIAALILLLITAVAL-SQTETLSETGIAAEVNGEIITMDTFLSKVLPNYTEISKRIE 59

Query: 61  -----------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
                           QK+  E E+ +++ LI ETL  Q  ++ GI  D   +     + 
Sbjct: 60  EVDPLFSEMLLNTEAGQKLLEEYERNSLEALIEETLLIQYAKEVGIEADIEALREVVSKS 119

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
             +T    +   S  D   +   +     + ++    VV++    +  +   E       
Sbjct: 120 IMDTLTELQIEKSDADLFYVLKGYIDGLSSYEA---KVVRDLAYKEVLSSLYEAVTVNAT 176

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
           +    + +Y +        + +  +   +         S  +                +V
Sbjct: 177 VTEEEIEQYYLANSSRYAVEEERADMKVLLFDSFSEAYSVWKAASRDANPSSVLDTFPEV 236

Query: 230 SIGKAQYLLESDLHPQFQNLLKKSQNN--TTNPYVTQKGVEYIAICDKRDLGGE--IALK 285
             G         L+P+    L K       ++          I +      G +    ++
Sbjct: 237 QSGSYTREEIEALNPELVKSLFKPTEGELLSSVVTLDNKYAVIYLESYSPAGAKGIEDVR 296

Query: 286 AYLSAQNTPTKIEKHEAEYVKK----LRSNAIIHYY 317
             +       K +     + ++     +  A+I  Y
Sbjct: 297 EEIQGILISEKKDLFWRIWQEQEFKPFKEEAVIKRY 332


>gi|329767659|ref|ZP_08259179.1| hypothetical protein HMPREF0428_00876 [Gemella haemolysans M341]
 gi|328839086|gb|EGF88672.1| hypothetical protein HMPREF0428_00876 [Gemella haemolysans M341]
          Length = 312

 Score = 62.8 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/310 (12%), Positives = 97/310 (31%), Gaps = 26/310 (8%)

Query: 13  IKLLTTYFV-LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
           +K      + + +   V  ++  S   +  I +      +T+ DI + I          +
Sbjct: 1   MKKFKKAILPIALSISVIGLAGCSTGGTKYISSKAGD--VTEKDIVESI-------GASQ 51

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           L K A   +I + L     +K     D  T++    +     G   +       +Q +  
Sbjct: 52  LSKTATSMMIQKVLL----DKYKNKIDQKTIDEQLQKAQEQYGGKDKF------EQLLKQ 101

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
             F        +     +   +  Y     +      +          I   + S  +  
Sbjct: 102 QGFTLDKYKDGLKVKAAQTLLINDYAGTNDDKLKESYEKNKHQYHLAHILVSVKSESNPN 161

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLE--SDLHPQFQN 248
             +    +K+ ++  +            ++ +    +  + G   +  +  +    +F++
Sbjct: 162 GLSDEEAKKKAEEVLKKLKDGGDFATLAKENSNDTANASNGGDLGWSSKEDNSFVKEFKD 221

Query: 249 LLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEI--ALKAYLSAQNTPTKIEKHEAEYV 305
                S++ T++   T  G   I + D++D   +      A  +A+    K     ++ +
Sbjct: 222 AAYALSKDKTSDVVKTSFGYHIIKVLDEKDSSFDELKPALAEKAAEEAVKKDSTIVSKAL 281

Query: 306 KKLRSNAIIH 315
           KKL     + 
Sbjct: 282 KKLFEEYNVK 291


>gi|332665904|ref|YP_004448692.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332334718|gb|AEE51819.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 656

 Score = 62.8 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/273 (10%), Positives = 71/273 (26%), Gaps = 41/273 (15%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +L+I C   ++ +        +  T++G  +   +        K    N +  + 
Sbjct: 1   MAKNLLLLIGCFFSLMVFSQAQDKDPVLFTVDGTPVHVSEFK--YIYSKTNGKNADFSRA 58

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +QE +    K +   K       +TV                                 
Sbjct: 59  TLQEYLDLYTKFKLKVKKAKDMKLDTVQ--------------------------VLQEEL 92

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
                Q     ++      K      E       +            +     + K  + 
Sbjct: 93  AGYRRQLADSYLLNKQVTEKLTKELFERSQYDLDIS---------HILFALPAEAKGADT 143

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD-VSIGKAQYLL---ESDLHPQFQNLLK 251
               ++  +     L+        ++ ++      + G   ++     +  +P      +
Sbjct: 144 VSTFRQAMEVRARLLKGEDFATIAKQVSADKSAATNGGNIGFVTAMFPNGFYPLESVAYR 203

Query: 252 KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL 284
            S +  + P  T  G   + +  KR   GE+ +
Sbjct: 204 SSFDQVSMPVRTSVGYHLVKVHSKRPARGEVEV 236



 Score = 60.5 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/131 (9%), Positives = 34/131 (25%), Gaps = 3/131 (2%)

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
              +            +        +  L  +    +           G   ++  +   
Sbjct: 238 HILLRTEDADAMAVKMQIDTLYAALKKGLNFEELAAKNSQDTRTADKGGYVGFVTINRFE 297

Query: 244 PQFQNLLKK--SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN-TPTKIEKH 300
             F++         + + P+ T  G   I    K+++     ++  L A+     + E  
Sbjct: 298 QAFEDAAFSVAKDGDYSKPFQTSVGWHIIKRISKKEIQPYDQMRGQLEARIKRDARFEMA 357

Query: 301 EAEYVKKLRSN 311
               V  ++  
Sbjct: 358 RKAMVDDIKRE 368


>gi|310779548|ref|YP_003967881.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ilyobacter
           polytropus DSM 2926]
 gi|309748871|gb|ADO83533.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ilyobacter
           polytropus DSM 2926]
          Length = 575

 Score = 62.8 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 41/162 (25%), Gaps = 8/162 (4%)

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           ++ D    Y   E E+    +K K            +        +              
Sbjct: 307 LEKDIKDSYKVSEDELKNFFEKNKLAYDTAASSDANIVEFKAEVSEKDKETALEKAKEIL 366

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP--YVTQK 265
                        K++        G   +  +  +   F++ + K ++    P    TQ 
Sbjct: 367 KEATPENFEELAIKYSEGPSGPKGGDLGWFEKGQMVKPFEDAVFKGESGKVYPEIVETQF 426

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
           G   I + +K         KA         KI     + +K 
Sbjct: 427 GHHIIYVEEK------EESKAKARHILITNKISDETKKLLKD 462


>gi|94986748|ref|YP_594681.1| parvulin-like peptidyl-prolyl isomerase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94730997|emb|CAJ54360.1| Parvulin-like peptidyl-prolyl isomerase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 305

 Score = 62.4 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/321 (12%), Positives = 99/321 (30%), Gaps = 39/321 (12%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK------ 58
           +F  L  FI + T Y+ +  F +  + ++      S +   +NGE IT   +        
Sbjct: 1   MFNWLYIFI-IFTLYYCVFPFSLYAVENFP-----SGVMAIVNGEPITLQQVEALHDVSG 54

Query: 59  RIALLKLQKINGELEKIAVQELIV-ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
            I  L+ +     L++     L           E   +       +    ++        
Sbjct: 55  NILPLREKPEVHFLQEQYGDSLYTLIIYTLMSQELGKLGLKVTEQDVLLAENEIKQDYVG 114

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
           EDF   L ++ +    ++Q +  +  +     +    K+     EI     K  +     
Sbjct: 115 EDFEKSLQEEYLDIETWRQLMKQRLTFQRFQHHILRPKFTLSSDEIEEYYFKHYSEFFIP 174

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
             +  +       +++N    + + KD                      +D+  G    +
Sbjct: 175 EKVEII----WYQEVENSQQRKAKHKDC-------------------DRNDIEQGDIIRV 211

Query: 238 LESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTP 294
               L  + +   +K      T  +   +  +Y  +  +        I   + +      
Sbjct: 212 ALDRLPAKMRQDLMKIKPGEYTPRHKEGEIYQYAFLRKRYPAHQADIIEAYSRIELILLE 271

Query: 295 TKIEKHEAEYVKKLRSNAIIH 315
            K+E+   ++++++   A I 
Sbjct: 272 QKMEQAYEDWLEQVIPQAKIK 292


>gi|304398127|ref|ZP_07380002.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. aB]
 gi|304354413|gb|EFM18785.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. aB]
          Length = 93

 Score = 62.4 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 9/78 (11%), Positives = 20/78 (25%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +   K+      +        +K ++       G      +  + P F + +      
Sbjct: 13  KEEALAKEILAKLAKGGNFQELAKKHSTCPSGRKGGDLGEFRQGQMVPAFDKAVFTCPLL 72

Query: 256 NTTNPYVTQKGVEYIAIC 273
               P  T  G   I + 
Sbjct: 73  TPYGPVKTGFGYHIIKVL 90


>gi|167624635|ref|YP_001674929.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           halifaxensis HAW-EB4]
 gi|167354657|gb|ABZ77270.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           halifaxensis HAW-EB4]
          Length = 92

 Score = 62.4 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 10/80 (12%), Positives = 25/80 (31%), Gaps = 1/80 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             + + +D ++  L      +  +  +S       G         +  +F + +     N
Sbjct: 12  DTEAQCQDLKQQILDGADFGDVAKANSSCPSSAQGGDLGSFGPGMMVKEFDEVVFSAPLN 71

Query: 256 NTTNPYVTQKGVEYIAICDK 275
               P  TQ G   + +  +
Sbjct: 72  EVQGPVKTQFGYHLLEVTSR 91


>gi|152993831|ref|YP_001359552.1| peptidyl-prolyl cis-trans isomerase C [Sulfurovum sp. NBC37-1]
 gi|151425692|dbj|BAF73195.1| peptidyl-prolyl cis-trans isomerase C [Sulfurovum sp. NBC37-1]
          Length = 93

 Score = 62.4 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 9/71 (12%), Positives = 24/71 (33%), Gaps = 1/71 (1%)

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQ 264
           E+            +++++       G+     +  + P+F + +          P  TQ
Sbjct: 22  EKINSGETTFEAAAKEYSTCPSGARGGELGTFSQGQMVPEFDKVVFNDEVGIVHGPVKTQ 81

Query: 265 KGVEYIAICDK 275
            G   + I ++
Sbjct: 82  FGYHLLEITER 92


>gi|854592|emb|CAA60941.1| ESS1 [Saccharomyces cerevisiae]
 gi|1015652|emb|CAA89541.1| ESS1 [Saccharomyces cerevisiae]
          Length = 190

 Score = 62.4 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/193 (7%), Positives = 45/193 (23%), Gaps = 12/193 (6%)

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           LI    + +    + +  D  +              S +    F  +         +   
Sbjct: 6   LIPTHNRLRHHNDAPMPSDVASRTGLPTPWTVRYSKSKKREYFFNPETKHSQWEEPEGTN 65

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
              +   +  +    +   L + I                  +          Q+     
Sbjct: 66  KDQLHKHLRDHPV--RVRCLHILIKH---------KDSRRPASHRSENITISKQDATDEL 114

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT 258
           K +    +   +        ++ +        G   +    ++ P F++   +      +
Sbjct: 115 KTLITRLDDDSKTNSFEALAKERSDCSSYKRGGDLGWFGRGEMQPSFEDAAFQLKVGEVS 174

Query: 259 NPYVTQKGVEYIA 271
           +   +  GV  I 
Sbjct: 175 DIVESGSGVHVIK 187


>gi|83747578|ref|ZP_00944615.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum UW551]
 gi|83725758|gb|EAP72899.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum UW551]
          Length = 281

 Score = 62.4 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/286 (11%), Positives = 75/286 (26%), Gaps = 54/286 (18%)

Query: 42  IRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           +   +NG  +T   + + IA    Q    ++ +   Q+LI   L +Q+  K+        
Sbjct: 35  VIALVNGTQVTQAQLDRAIAQSGAQANP-QIAQALKQQLIARELFRQQAAKNPAYEKLPA 93

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
           V                                 Q      I    +K++        E 
Sbjct: 94  VKQAM-----------------------------QEAHDAVITQAWLKDNIKPAPITDEQ 124

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
                   + ++  +EY  R +         Q    +++                   ++
Sbjct: 125 VKARYDAIVASLGDKEYKARVIQLGDDVTAAQVLELLKQ-----------GGDFAKLAQQ 173

Query: 222 FASKIHDVSIGKAQYLLESD-----------LHPQFQNLLKKSQNNTTNPYVTQKGVEYI 270
           +++  + V  G   ++               L    +         +T P         +
Sbjct: 174 YSTAPNKVRGGDMDWVSFKVPAEEGKTQNLPLPLAREIAALGIGATSTAPVEVGSQRYIV 233

Query: 271 AICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            +   R   +     +K  +       ++E+   + V  L   A +
Sbjct: 234 KVEAARPTQVPAYDTVKPAIRQALESAELERVTVQVVGGLLKQAKV 279


>gi|157962465|ref|YP_001502499.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella pealeana
           ATCC 700345]
 gi|157847465|gb|ABV87964.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella pealeana
           ATCC 700345]
          Length = 92

 Score = 62.4 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 24/80 (30%), Gaps = 1/80 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             + +  + ++  L      +  +  +S       G         +  +F + +     N
Sbjct: 12  DTEAQCLELKQQILDGADFGDVAKANSSCPSSAQGGDLGSFGPGMMVKEFDEVVFSAPLN 71

Query: 256 NTTNPYVTQKGVEYIAICDK 275
               P  TQ G   + +  +
Sbjct: 72  EVQGPVKTQFGYHLLEVTSR 91


>gi|162451238|ref|YP_001613605.1| foldase protein prsA precursor [Sorangium cellulosum 'So ce 56']
 gi|161161820|emb|CAN93125.1| Foldase protein prsA precursor (EC 5.2.1.8) [Sorangium cellulosum
           'So ce 56']
          Length = 605

 Score = 62.4 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/245 (10%), Positives = 68/245 (27%), Gaps = 10/245 (4%)

Query: 59  RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
           R   ++ ++      K   +++   T       +     +        +  AR      E
Sbjct: 137 RYLDVRNRQTKKFDNKQYEKQIRNITKMSPTDFREYQRKELIAARMRELIRARVRVGENE 196

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQS--IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            F  F  ++      + ++       +  D  +        N + E+    +  K     
Sbjct: 197 AFEQFSREKSTRTLAYVRFDRRFYSDLIVDTSEKAIQAWADNNKEELDKAWEGRKAQYQP 256

Query: 177 EYLIRTVLFSIPDNKLQNQ------GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS 230
           E  +  VL      +   Q         + RI+ A +   +     +     +       
Sbjct: 257 ECRVARVLAVEVRPEEAEQGPEAGKAAAKARIEGAVQRLKKGESFADVARSASDDPSAAR 316

Query: 231 IGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDK-RDLGGEIALKAYL 288
            G+   + +  L    ++   +    + ++   T+ G   I +    +D   E   +   
Sbjct: 317 GGELGCVAKGRLSKPVEDKLFEMKAGDVSDLIETEDGFHVIKLEQIAKDAEAEKIGRQET 376

Query: 289 SAQNT 293
           +    
Sbjct: 377 ARDLY 381


>gi|170727411|ref|YP_001761437.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella woodyi
           ATCC 51908]
 gi|169812758|gb|ACA87342.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella woodyi
           ATCC 51908]
          Length = 92

 Score = 62.4 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 8/78 (10%), Positives = 25/78 (32%), Gaps = 1/78 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           +++ +  ++  +      +  +  +S       G         +  +F + +     N  
Sbjct: 14  EEKCEALKQEIMGGADFADVAKANSSCPSGAQGGDLGSFGPGMMVKEFDEVVFSAPLNEV 73

Query: 258 TNPYVTQKGVEYIAICDK 275
             P  TQ G   + +  +
Sbjct: 74  QGPVKTQFGYHLLEVTSR 91


>gi|134283497|ref|ZP_01770197.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 305]
 gi|167723620|ref|ZP_02406856.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei DM98]
 gi|134245246|gb|EBA45340.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 305]
          Length = 265

 Score = 62.4 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 46/180 (25%), Gaps = 4/180 (2%)

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
             ++   + +    L     +               R+ +  + +     +        +
Sbjct: 73  DDALDALLARELTPLPEPTRDACERYYLNHAARFRRRDIVYASHILFAVTDATPLAPLRR 132

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKKSQNNT 257
           +                 +  + ++       G    LL  D  P+F             
Sbjct: 133 EAEATLARVLAEPQTFEARARELSNCPSAQVGGSLGQLLRGDSVPEFDAAVFDTTDSGVL 192

Query: 258 TNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                T+ G   + I  +   D     A+ A ++A        K   +YV  L S A I 
Sbjct: 193 PRLVNTRFGFHIVRIERRVPGDPVPFDAVAAEIAAFLAERVRHKAIQQYVTILASGARIE 252


>gi|53722183|ref|YP_111168.1| rotamase/peptidyl-prolyl cis-trans isomerase family protein
           [Burkholderia pseudomallei K96243]
 gi|76817394|ref|YP_335277.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia pseudomallei
           1710b]
 gi|126456222|ref|YP_001075575.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Burkholderia pseudomallei 1106a]
 gi|167742587|ref|ZP_02415361.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 14]
 gi|167819750|ref|ZP_02451430.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 91]
 gi|167849600|ref|ZP_02475108.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei B7210]
 gi|167906559|ref|ZP_02493764.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei NCTC
           13177]
 gi|167914915|ref|ZP_02502006.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 112]
 gi|217419213|ref|ZP_03450720.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 576]
 gi|226200237|ref|ZP_03795782.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei Pakistan
           9]
 gi|242311165|ref|ZP_04810182.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 1106b]
 gi|254190243|ref|ZP_04896752.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|254193423|ref|ZP_04899857.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei S13]
 gi|254263976|ref|ZP_04954841.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 1710a]
 gi|254300502|ref|ZP_04967948.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 406e]
 gi|52212597|emb|CAH38623.1| putative rotamase/peptidyl-prolyl cis-trans isomerase family
           protein [Burkholderia pseudomallei K96243]
 gi|76581867|gb|ABA51341.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia pseudomallei
           1710b]
 gi|126229990|gb|ABN93403.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 1106a]
 gi|157810082|gb|EDO87252.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 406e]
 gi|157937920|gb|EDO93590.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|169650176|gb|EDS82869.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei S13]
 gi|217398517|gb|EEC38532.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 576]
 gi|225927745|gb|EEH23787.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei Pakistan
           9]
 gi|242134404|gb|EES20807.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 1106b]
 gi|254214978|gb|EET04363.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 1710a]
          Length = 265

 Score = 62.4 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 46/180 (25%), Gaps = 4/180 (2%)

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
             ++   + +    L     +               R+ +  + +     +        +
Sbjct: 73  DDALDALLARELTPLPEPTRDACERYYLNHAARFRRRDIVYASHILFAVTDATPLAPLRR 132

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKKSQNNT 257
           +                 +  + ++       G    LL  D  P+F             
Sbjct: 133 EAEATLARVLAEPQTFEARARELSNCPSAQVGGSLGQLLRGDSVPEFDAAVFDTTDSGVL 192

Query: 258 TNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                T+ G   + I  +   D     A+ A ++A        K   +YV  L S A I 
Sbjct: 193 PRLVNTRFGFHIVRIERRVPGDPVPFDAVAAEIAAFLAERVRHKAIQQYVTILASGARIE 252


>gi|329297876|ref|ZP_08255212.1| peptidyl-prolyl cis-trans isomerase C [Plautia stali symbiont]
          Length = 82

 Score = 62.4 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 9/78 (11%), Positives = 21/78 (26%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             + + K       +        +K ++     + G      +  + P F + +      
Sbjct: 2   KQEAQAKALLAQLEKGANFQQLAKKHSTCPSGRNGGDLGEFRKGQMVPTFDKAVFTCPLL 61

Query: 256 NTTNPYVTQKGVEYIAIC 273
               P  T  G   I + 
Sbjct: 62  QPYGPVKTAFGYHIIKVL 79


>gi|317010879|gb|ADU84626.1| hypothetical protein HPSA_03125 [Helicobacter pylori SouthAfrica7]
          Length = 414

 Score = 62.4 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/290 (12%), Positives = 85/290 (29%), Gaps = 35/290 (12%)

Query: 32  SYKSWAMSSRIR----TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKK 87
           +     +  ++       +NG  IT   I +       Q+ +   +  A   LI E +K 
Sbjct: 148 NAAGNTLEDKVVGGISLLVNGSPITLYQIQEE------QEKSKVSKAQARDRLIAERIKN 201

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           QEIE+  I  D + ++      A+  G+  + F   L  +G     ++  L       ++
Sbjct: 202 QEIERLKIHVDDDKLDQEMAMMAQQQGMDLDHFKQMLMAEGHYKL-YRDQLKEHLEMQEL 260

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           ++N  +        E    +   K+                    ++             
Sbjct: 261 LRNILLTNVDTSS-ETKMREYYNKHKEQFSIPTEVETVRYTSTNQEDLERAMADPNLEIP 319

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGV 267
              +  +                       +++      Q  +  ++ + T       G 
Sbjct: 320 GVTKANEKIE--------------------MKTLNPQIAQVFISHAEGSFTPVMNGGGGQ 359

Query: 268 EY---IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                I     ++       K +++ +      +K   E+ +KLR  + I
Sbjct: 360 FITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEKLRVKSRI 409


>gi|190150329|ref|YP_001968854.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307263670|ref|ZP_07545279.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189915460|gb|ACE61712.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306870983|gb|EFN02718.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 625

 Score = 62.4 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 16/252 (6%), Positives = 53/252 (21%), Gaps = 15/252 (5%)

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH--ARNTGLSAEDFSSFLD 125
             G L     + +I       E E                 +  A+              
Sbjct: 156 NEGMLFSQIQEGVIGSEFNVPEQEALLAKLLLQKRQVRLANYSIAKEATNQTASAEELQK 215

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
                 +   +   +   +  +   D        + ++    +K K     +   R    
Sbjct: 216 YYDAHKSELIEPEKLTVEYVTLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHI 275

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHP 244
            + +                 E            +  ++  +     G   +        
Sbjct: 276 QLANETDAKAVA---------EQVKNGADFAELAKTKSTDKLSAAQGGDLGWAKAGTFPK 326

Query: 245 QFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHE 301
            F+           +           I + +++   +     +K  ++       +    
Sbjct: 327 AFEAAAASLQDGQVSAVVNVDGAYHIIKVLERKAETVIPLEQVKDQITKTIRQELLLTEY 386

Query: 302 AEYVKKLRSNAI 313
           +   +++ + A 
Sbjct: 387 SNIAREMANRAF 398



 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 61/233 (26%), Gaps = 23/233 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +      F L+    V                 +NG  IT    +   
Sbjct: 1   MIENMHERTKGPV--FKIIFALVSLSFVITGIGTGLVGGDTAAVKVNGTEITQQAFNAAR 58

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              +                      +  +  +  L+ E L +Q  ++  +   +  +  
Sbjct: 59  NRQQSVLNAQMGERFWDLLDTPEYAKQFNQSVLNGLVDEELLRQYAKELKLGISAEQIKS 118

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
                    ++   S + +   L   G+  + +   +    ++  + +     ++     
Sbjct: 119 EIVNSPVFQQDGKFSNDLYQQTLRSNGLSADGYAAIVNEGMLFSQIQEGVIGSEFNVP-- 176

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
           E  A   K+     +  L    +     N+  +   +QK     +   +   K
Sbjct: 177 EQEALLAKLLLQKRQVRLANYSIAKEATNQTASAEELQKYYDAHKSELIEPEK 229


>gi|237508659|ref|ZP_04521374.1| ppic-type ppiase domain protein [Burkholderia pseudomallei MSHR346]
 gi|235000864|gb|EEP50288.1| ppic-type ppiase domain protein [Burkholderia pseudomallei MSHR346]
          Length = 265

 Score = 62.4 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 46/180 (25%), Gaps = 4/180 (2%)

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
             ++   + +    L     +               R+ +  + +     +        +
Sbjct: 73  DDALDALLARELTPLPEPTRDACERYYLNHAARFRRRDIVYASHILFAVTDGTPLAPLRR 132

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKKSQNNT 257
           +                 +  + ++       G    LL  D  P+F             
Sbjct: 133 EAEATLARVLAEPQTFEARARELSNCPSAQVGGSLGQLLRGDSVPEFDAAVFDTTDSGVL 192

Query: 258 TNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                T+ G   + I  +   D     A+ A ++A        K   +YV  L S A I 
Sbjct: 193 PRLVNTRFGFHIVRIERRVPGDPVPFDAVAAEIAAFLAERVRHKAIQQYVTILASGARIE 252


>gi|206580899|ref|YP_002241159.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae 342]
 gi|206569957|gb|ACI11733.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae 342]
          Length = 93

 Score = 62.4 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 1/83 (1%)

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKS 253
           Q   +K   +      R     +  ++++        G      +  +   F Q +    
Sbjct: 11  QVKEEKLAHEILAKLERGISFDHLAKRYSKCPSGRHGGDLGEFPQGTMVGPFDQAVFSCP 70

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
                 P  T+ G   I +  +R
Sbjct: 71  LLKPYGPVKTKFGYHIIKVLYRR 93


>gi|146299175|ref|YP_001193766.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacterium
           johnsoniae UW101]
 gi|146153593|gb|ABQ04447.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacterium
           johnsoniae UW101]
          Length = 699

 Score = 62.4 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/257 (10%), Positives = 61/257 (23%), Gaps = 18/257 (7%)

Query: 50  VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
            I+D DI   +   + +    E  +     L+ +   KQ+         +          
Sbjct: 207 KISDSDIVDYMKKNEKKFKADETRE-IQYVLVEDKASKQDEADIKAKITALLSGSVVYNA 265

Query: 110 ARNTGLSAEDFSSFLD--------KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
                 +   F +  +             D+ +    A+ ++  D + +          +
Sbjct: 266 KTGKNDTLPGFRNATNIAEFVNANSDVPYDSTYVPKNALPAVDADKLFSLPAGAIYGPYV 325

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE---------ESRLRL 212
                              +     I     Q     +KR K+           + +   
Sbjct: 326 YGKYYAISKSLGFKAGVNAKASHILIGYEGSQTPNQKEKRTKEEAKAKAEEILAQVQSNP 385

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAI 272
                     +        G   Y  +  +   F + +  +         T  G   I I
Sbjct: 386 DSFMMLAFTSSDDSSAQQGGDLGYFGQGQMVKPFNDFVFNNGIGKVGLVETPFGFHVIKI 445

Query: 273 CDKRDLGGEIALKAYLS 289
            DK+D      +   + 
Sbjct: 446 TDKQDGIRLATIAQKIE 462


>gi|323336931|gb|EGA78188.1| Ess1p [Saccharomyces cerevisiae Vin13]
          Length = 190

 Score = 62.4 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/193 (7%), Positives = 45/193 (23%), Gaps = 12/193 (6%)

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           LI    + +    + +  D  +              S +    F  +         +   
Sbjct: 6   LIPTHNRLRHHNDAPMPSDVASSTGLPTPWTVRYSKSKKREYFFNPETKHSQWEEPEGTN 65

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
              +   +  +    +   L + I                  +          Q+     
Sbjct: 66  KDQLHKHLRDHPV--RVRCLHILIKH---------KDSRRPASHRSENITISKQDATDEL 114

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT 258
           K +    +   +        ++ +        G   +    ++ P F++   +      +
Sbjct: 115 KTLITRLDDDSKTNSFEALAKERSDCSSYKRGGDLGWFGRGEMQPSFEDAAFQLKVGEVS 174

Query: 259 NPYVTQKGVEYIA 271
           +   +  GV  I 
Sbjct: 175 DIVESGSGVHVIK 187


>gi|167855404|ref|ZP_02478170.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus parasuis 29755]
 gi|167853470|gb|EDS24718.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus parasuis 29755]
          Length = 624

 Score = 62.4 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/282 (7%), Positives = 71/282 (25%), Gaps = 21/282 (7%)

Query: 53  DGDISKRIALLKLQKINGELEKIAV---------------QELIVETLKKQEIEKSGITF 97
             +I    A  +  K N  L + A+               + ++   +++  +  S    
Sbjct: 117 KSEIVNSPAFQQDGKFNNNLYQQALRNNGLTADGYAAIVYEGMLFAQIQEAIVNSSFTVP 176

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
               +    +   R   L+    +  ++ Q       + Y           +   +    
Sbjct: 177 AQQELLAKLLLQKRQVRLATYSIAKEVNNQTASTEEMQAYYEANKANFVNPEKLTVEYIS 236

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV--QKRIKDAEESRLRLPKD 215
               ++    Q         Y      ++           V  +    +  ++  +    
Sbjct: 237 IEPKDLANKIQVTNEQIDTYYQTNKAKYTTKGEAKIAHIQVATEAEANEIVQALAKGEDF 296

Query: 216 CNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAIC 273
               +  +   +     G   +         F++         T+ P         I + 
Sbjct: 297 AQLAKAKSQDKLSAAQGGDLGWAKAGVFPKAFEDAANMLDAGKTSQPIKVDNAFHIIKVL 356

Query: 274 DK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           ++    +     +KA ++       +    +   +++ + A 
Sbjct: 357 ERNVETVVPLEKVKAQITDTIRNELLLTEYSNITREMANVAF 398



 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/182 (8%), Positives = 49/182 (26%), Gaps = 21/182 (11%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+      ++      F L+    V          +      +NGE I+    S+  
Sbjct: 1   MIEKMHEKSGGWV--FKIIFALVSLSFVLGGIGGGLMATDNSVAKVNGEEISQQVFSRAK 58

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              +                      +  +  +  L+ + L +Q  +   I   ++ +  
Sbjct: 59  NQQQNILNAQLGERFWDLMDNPIYVKQFHESILNGLVDDELLRQYAKSLKIDVSADQIKS 118

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
                    ++   +   +   L   G+  + +   +    ++  + +      +     
Sbjct: 119 EIVNSPAFQQDGKFNNNLYQQALRNNGLTADGYAAIVYEGMLFAQIQEAIVNSSFTVPAQ 178

Query: 162 EI 163
           + 
Sbjct: 179 QE 180


>gi|21554407|gb|AAM63512.1| peptidyl-prolyl cis-trans isomerase-like protein [Arabidopsis
           thaliana]
          Length = 299

 Score = 62.4 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 13/117 (11%), Positives = 41/117 (35%), Gaps = 3/117 (2%)

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN 259
           +   + ++  L   +  +   +++        G   ++    + P+F+    K++ +   
Sbjct: 109 ELFAELQKKFLDGEEMSDLAAEYSICPSKKDGGILGWVKLGQMVPEFEEAAFKAELDQVV 168

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
              TQ G+  + +  +R+   +I +   L ++             +  +R    I  
Sbjct: 169 RCRTQFGLHLLQVLSEREPVKDIQV-EELHSKMQDPVFMDEAQ--LIDVREPNEIEI 222


>gi|224143511|ref|XP_002336050.1| predicted protein [Populus trichocarpa]
 gi|222869555|gb|EEF06686.1| predicted protein [Populus trichocarpa]
          Length = 141

 Score = 62.4 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 9/103 (8%), Positives = 29/103 (28%), Gaps = 2/103 (1%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
                R +L        +    + +    +   ++   +      +++        G   
Sbjct: 40  TYVKARHILCEKQGKINEAYQKL-QDGWLSNGDKVPPAEFAKLASEYSECPSGKKGGDLG 98

Query: 236 YLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
           +     +   FQ+         T+ P+ +  G   I    +++
Sbjct: 99  WFPRGKMAGPFQDVAFATQIGATSAPFKSTHGYHVILCEGRKN 141


>gi|224098920|ref|XP_002311318.1| predicted protein [Populus trichocarpa]
 gi|222851138|gb|EEE88685.1| predicted protein [Populus trichocarpa]
          Length = 148

 Score = 62.4 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 9/103 (8%), Positives = 29/103 (28%), Gaps = 2/103 (1%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
                R +L        +    + +    +   ++   +      +++        G   
Sbjct: 47  TYVKARHILCEKQGKINEAYQKL-QDGWLSNGDKVPPAEFAKLASEYSECPSGKKGGDLG 105

Query: 236 YLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
           +     +   FQ+         T+ P+ +  G   I    +++
Sbjct: 106 WFPRGKMAGPFQDVAFATQIGATSAPFKSTHGYHVILCEGRKN 148


>gi|18419898|ref|NP_568372.1| rhodanese-like domain-containing protein / PPIC-type PPIASE
           domain-containing protein [Arabidopsis thaliana]
 gi|13877805|gb|AAK43980.1|AF370165_1 putative peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana]
 gi|16323478|gb|AAL15233.1| putative peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana]
 gi|332005309|gb|AED92692.1| rhodanese and PPIC-type PPIASE domain-containing protein
           [Arabidopsis thaliana]
          Length = 299

 Score = 62.4 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 14/117 (11%), Positives = 41/117 (35%), Gaps = 3/117 (2%)

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN 259
           +   + ++  L   +  +   +++        G   ++    + P+F+    K++ N   
Sbjct: 109 ELFAELQKKFLDGEEMSDLAAEYSICPSKKDGGILGWVKLGQMVPEFEEAAFKAELNQVV 168

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
              TQ G+  + +  +R+   +I +   L ++             +  +R    I  
Sbjct: 169 RCRTQFGLHLLQVLSEREPVKDIQV-EELHSKMQDPVFMDEAQ--LIDVREPNEIEI 222


>gi|320540341|ref|ZP_08039993.1| putative peptidyl-prolyl cis-trans isomerase (rotamase D) [Serratia
           symbiotica str. Tucson]
 gi|320029661|gb|EFW11688.1| putative peptidyl-prolyl cis-trans isomerase (rotamase D) [Serratia
           symbiotica str. Tucson]
          Length = 628

 Score = 62.4 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/357 (9%), Positives = 88/357 (24%), Gaps = 86/357 (24%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKIN----------------GELEKIAVQELIVETLK 86
              +NG+VI    + +     + +                     + +  + +LI   L 
Sbjct: 42  AAKVNGQVIERAQLEQVFQSERQRMQQQLGDQFSVLAGNEGYMQRMRQQVLSQLIDNMLL 101

Query: 87  KQEIEKSGITFDSNTVNYFF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            Q  +K G++     +            +       +   L   G   + F Q +  Q +
Sbjct: 102 AQYAKKLGLSVSDEQIKNAIRKTPYFQTDGQFDNAKYLDLLGSMGYTVDDFAQSMRQQLV 161

Query: 144 WPDVVKN---------------------------------DFMLKYGNLEMEIPANKQKM 170
              V +                                      K    + E+ A  Q+ 
Sbjct: 162 NQQVTQAFGESGFMLPAESQAMAALLLQQRNVRLATIDLSALQAKQNVSDDELKAYYQQN 221

Query: 171 KNITVREYLIRTV-------------------LFSIPDNKLQNQGFVQKRIKDAEESR-- 209
           +N  +    I+                     + +  D    + G  +++     + +  
Sbjct: 222 QNSFIAPEQIKVSYISIDAVSMQDKVKVSDTDISAYYDRHKSSYGQPERKNYSVIQLKTE 281

Query: 210 ----------LRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
                      +        +  ++  I   + G+   L       + +      +   +
Sbjct: 282 TEANAVLSELKKGGDFATLAKDKSTDIISRRTGGELGLLEPETTADELKQAHLTEKGQLS 341

Query: 259 NPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           +   +  G   + + D      +    +   ++ Q    K         +K+ + A 
Sbjct: 342 SVVNSSIGYLIVRLNDIEPEKMKPLSDVHETIAKQVRREKAIDAYYALQQKVSAAAT 398


>gi|288937797|ref|YP_003441856.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Klebsiella variicola
           At-22]
 gi|290513193|ref|ZP_06552555.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella sp. 1_1_55]
 gi|288892506|gb|ADC60824.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Klebsiella variicola
           At-22]
 gi|289774404|gb|EFD82410.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella sp. 1_1_55]
          Length = 93

 Score = 62.4 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 10/81 (12%), Positives = 23/81 (28%), Gaps = 1/81 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +K   +      R     +  ++++        G      +  +   F Q +      
Sbjct: 13  KEEKLAHEILAKLERGISFDHLAKRYSKCPSGRHGGDLGEFPQGTMVGPFDQAVFSCPLL 72

Query: 256 NTTNPYVTQKGVEYIAICDKR 276
               P  T+ G   I +  +R
Sbjct: 73  KPYGPVKTKFGYHIIKVLYRR 93


>gi|256828005|ref|YP_003156733.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256577181|gb|ACU88317.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfomicrobium
           baculatum DSM 4028]
          Length = 93

 Score = 62.4 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 7/71 (9%), Positives = 19/71 (26%), Gaps = 1/71 (1%)

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQ 264
           ++              ++        G         +  +F Q    ++      P  TQ
Sbjct: 22  KKITEEGGDFAEIARNYSQCPSGKRGGDLGTFGPGQMVAEFDQVCFNEAVGVVHGPVKTQ 81

Query: 265 KGVEYIAICDK 275
            G   + + ++
Sbjct: 82  FGFHLVEVTER 92


>gi|218262309|ref|ZP_03476823.1| hypothetical protein PRABACTJOHN_02497 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223460|gb|EEC96110.1| hypothetical protein PRABACTJOHN_02497 [Parabacteroides johnsonii
           DSM 18315]
          Length = 532

 Score = 62.4 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 15/150 (10%), Positives = 45/150 (30%), Gaps = 4/150 (2%)

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
                K       +   ++    D+    +     R ++  +            ++++S 
Sbjct: 224 KIHSRKQNPGLVRVAHVLIPFEKDSVKFGEAETLARAEEVYQKAKDGADFAELAKEYSSD 283

Query: 226 I-HDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLGGEI 282
                  G+       ++   F+       +    + P  T+ G   I + +K+ L    
Sbjct: 284 AGSAKRGGELPAFGVGEMVEPFEVAAFALNTPGELSRPVKTRFGYHIIKLIEKKGLPSFE 343

Query: 283 ALKAYLSAQNTPTKIE-KHEAEYVKKLRSN 311
             K   S Q    +   ++   + ++++  
Sbjct: 344 DKKKGWSRQMAQGERNFEYYGAFDERMKKE 373



 Score = 40.8 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/262 (8%), Positives = 60/262 (22%), Gaps = 40/262 (15%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           +L++  +   ++  +   +  +  T+ G+ I   +                         
Sbjct: 10  LLVLSLVFACMTGNAQVPADSVVMTVAGKQIPLDEF------------------------ 45

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
                     + S +          +V+  +N  L   +       +             
Sbjct: 46  -----IFIAQKNSEVNLSDRKSVNAYVELFKNFKLKVAEAEDLELDKTKAFKDELDSYRA 100

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           Q     +          + + E  A +           L   +         ++   V +
Sbjct: 101 QLTSSYL---------SDKDGEEAAVRAIYDRYGEVLELSHILFRLPQRTLSKDTVPVYQ 151

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ--YLLESDLHPQFQNLLKKSQNNTT 258
           +  +A E            ++      +    +     L    +             + +
Sbjct: 152 KAIEAYERIQAGEDFATVGKELKEADKENVGYEYVHCLLPMQTVKAFENVAYSMPVGSVS 211

Query: 259 NPYVTQKGVEYIAICDKRDLGG 280
            P  T  G   I I  ++   G
Sbjct: 212 LPVRTTMGFHIIKIHSRKQNPG 233


>gi|34556608|ref|NP_906423.1| hypothetical protein WS0160 [Wolinella succinogenes DSM 1740]
 gi|34482322|emb|CAE09323.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 279

 Score = 62.4 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 44/295 (14%), Positives = 103/295 (34%), Gaps = 25/295 (8%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           + +   +   +   +  + + I   +N + +T  ++ K   L  +       ++ A++ L
Sbjct: 5   IFLSLGLCASMVLAAPTLVNGISFYVNNQPVTLLELYKTAQLANVS------KERAMEML 58

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I + L + EIE+ GI+ +   VN    + A++ G + E F SFLD++G+    +K+ L  
Sbjct: 59  IDKMLHQDEIERYGISTNEIEVNQEVERIAKSNGATLEQFRSFLDQKGVNWESYKEDLKE 118

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           + +   +            + E         N  +     R           +    + K
Sbjct: 119 KVLKDKLYDKIVANNLRMAD-ERELVAYYESNKNLFSIPARIETIKYSSKNQEALVSLLK 177

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP 260
                 +  +  P+     +        +               QF  +    +++ T  
Sbjct: 178 NPLSQPKGLISEPETILTQKINPKLAALLQETPLG---------QFTQIFTIGEDHLTFL 228

Query: 261 YVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             ++  +  I            + K  +  +    K +K   E+ +KLR++A + 
Sbjct: 229 VKSKGDLVLI---------PFESAKEAVFHRLMMEKEDKVIREHFEKLRASAKVK 274


>gi|110639457|ref|YP_679666.1| peptidyl-prolyl cis-trans isomerase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110282138|gb|ABG60324.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 130

 Score = 62.4 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 12/112 (10%), Positives = 27/112 (24%)

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
                       +       P    +     Q   +             +   ++ S   
Sbjct: 17  CAKVATEHPCPAVEASHILTPAESPEQFENAQDTAEVIIAKLKNGESFSDLALQYGSDGT 76

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
               G   +     +   F++    +  N      TQ GV  + +  K+D+ 
Sbjct: 77  KTQGGNLGWFTRGMMVQPFEDSCYNATINKPLIVKTQFGVHVVKVTGKKDIP 128


>gi|187251884|ref|YP_001876366.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Elusimicrobium
           minutum Pei191]
 gi|186972044|gb|ACC99029.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Elusimicrobium
           minutum Pei191]
          Length = 390

 Score = 62.4 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 47/332 (14%), Positives = 97/332 (29%), Gaps = 62/332 (18%)

Query: 47  NGEVITDGDISKRIALLKLQKI------------NGELEKIAVQELIVETLKKQEIEKSG 94
           NG+ I   D  K     + Q                +LEK  + ++I + L  Q  EK G
Sbjct: 33  NGKPILQSDFDKVAGAFEAQYTAAAPKLMEQPGVKLKLEKEVLDQMINDELLFQAAEKEG 92

Query: 95  ITFDSNTVNYFFVQHAR-------------NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
           +    + ++    Q                +     + F + L K+GI    F+  L  Q
Sbjct: 93  VKAREDEIDEAVKQAKDALIPAADEKGKPISEKERTKQFDAALKKEGISQKQFRDKLKKQ 152

Query: 142 SIWPDVVKNDFMLKYGNLEM-------------------------------EIPANKQKM 170
            +    V+   + K   +E                                E+ A   ++
Sbjct: 153 IMSRKYVETAIVTKVKPVEEADAKALYDQVKAVMKKDSKKTALIKPEEHKKEVEAIAMRL 212

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI--HD 228
           + ++  +  I  +    P     ++   ++ +    + ++    D +   +  S      
Sbjct: 213 EQLSAPKVRIGHIFLEAPKAAGADKIKEKEALAKEIKKKIDGGMDFSTAVRQFSDDKNSQ 272

Query: 229 VSIGKAQYLL--ESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR--DLGGEIAL 284
            + G    +    +                 ++P  T  G   I I +K   +      +
Sbjct: 273 STGGDMILIKGAPNTPKEIDTKAFSLDVGKVSDPIKTDFGFHIIKIKEKSAAEEITYEKV 332

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                      +I+    E++K L S A I  
Sbjct: 333 AREFGQYIAAQRIQVAINEHIKDLNSKAEIKI 364


>gi|256822557|ref|YP_003146520.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kangiella koreensis
           DSM 16069]
 gi|256796096|gb|ACV26752.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kangiella koreensis
           DSM 16069]
          Length = 272

 Score = 62.4 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 17/181 (9%), Positives = 57/181 (31%), Gaps = 5/181 (2%)

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
            +  + D+++N+   +  + E      +Q          +  + +              +
Sbjct: 78  EEQAFQDLIENNINYQEVSDEDCQRYYEQNQAKFMTAPIMEVSHILLAVAPDDIEGRIEK 137

Query: 200 KRIKDAE--ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT 257
           K + +    +         + + +++    + + G    + +    P+F+  L       
Sbjct: 138 KTVAEKLISKLLKDSSLFTDMVIEYSGCPSNKTGGSLGQISKGQTVPEFERQLFPLDEGI 197

Query: 258 T-NPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              P  ++ G   + I  K D        +   +       +  +  ++Y+ +L  ++ I
Sbjct: 198 YDKPIESRYGYHIVFINKKIDGNQLEYSMVSEKIHDYLNVRRHRQAVSDYLYQLVEDSTI 257

Query: 315 H 315
            
Sbjct: 258 E 258


>gi|71660705|ref|XP_822068.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Trypanosoma
           cruzi strain CL Brener]
 gi|70887461|gb|EAO00217.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, putative
           [Trypanosoma cruzi]
          Length = 124

 Score = 62.4 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 3/78 (3%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTT 258
           R  +A +         +   +++      S G   +    ++   FQ           T 
Sbjct: 48  RAMEALKKINEGSSFADVAREYSED-KARSGGDLGWKRRGEMVGPFQEAAFALPKGGMTP 106

Query: 259 NPYVTQKGVEYIAICDKR 276
            P  T  G   I + DK+
Sbjct: 107 EPVKTSFGYHIILVEDKQ 124


>gi|226192799|pdb|3GPK|A Chain A, Crystal Structure Of Ppic-Type Peptidyl-Prolyl Cis-Trans
           Isomerase Domain At 1.55a Resolution.
 gi|226192800|pdb|3GPK|B Chain B, Crystal Structure Of Ppic-Type Peptidyl-Prolyl Cis-Trans
           Isomerase Domain At 1.55a Resolution
          Length = 112

 Score = 62.4 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 10/98 (10%), Positives = 26/98 (26%), Gaps = 1/98 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
             +         +N+  V    +   E   +         +++        G   ++  +
Sbjct: 8   YRIGEIFLAATEENKPQVFANAEKIVEQLKQGGSFVAYARQYSEASTAAVGGDLGWIRLA 67

Query: 241 DLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAICDKRD 277
            L  +               P   + G   + + DKR+
Sbjct: 68  QLPTELATTAASXGPGQLAGPVEIRGGFSILYLIDKRE 105


>gi|307250251|ref|ZP_07532205.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306857692|gb|EFM89794.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 625

 Score = 62.4 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 16/252 (6%), Positives = 53/252 (21%), Gaps = 15/252 (5%)

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH--ARNTGLSAEDFSSFLD 125
             G L     + +I       E E                 +  A+              
Sbjct: 156 NEGMLFSQIQEGVIGSEFNVPEQEALLAKLLLQKRQVRLANYSIAKEATNQTASAEELQK 215

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
                 +   +   +   +  +   D        + ++    +K K     +   R    
Sbjct: 216 YYDAHKSELIEPEKLTVEYVTLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHI 275

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHP 244
            + +                 E            +  ++  +     G   +        
Sbjct: 276 QLANETDAKAVA---------EQVKNGADFAELAKTKSTDKLSAAQGGDLGWAKAGTFPK 326

Query: 245 QFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHE 301
            F+           +           I + +++   +     +K  ++       +    
Sbjct: 327 AFEAAAASLQDGQVSAVVNVDGAYHIIKVLERKAETVIPLEQVKDQITKTIRQELLLTEY 386

Query: 302 AEYVKKLRSNAI 313
           +   +++ + A 
Sbjct: 387 SNIAREMANRAF 398



 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 61/233 (26%), Gaps = 23/233 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +      F L+    V                 +NG  IT    +   
Sbjct: 1   MIENMHERTKGPV--FKIIFALVSLSFVITGIGTGLVGGDTAAVKVNGTEITQQAFNAAK 58

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              +                      +  +  +  L+ E L +Q  ++  +   +  +  
Sbjct: 59  NRQQSVLNAQMGERFWDLLDTPEYAKQFNQSVLNGLVDEELLRQYAKELKLGISAEQIKS 118

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
                    ++   S + +   L   G+  + +   +    ++  + +     ++     
Sbjct: 119 EIVNSPVFQQDGKFSNDLYQQTLRSNGLSADGYAAIVNEGMLFSQIQEGVIGSEFNVP-- 176

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
           E  A   K+     +  L    +     N+  +   +QK     +   +   K
Sbjct: 177 EQEALLAKLLLQKRQVRLANYSIAKEATNQTASAEELQKYYDAHKSELIEPEK 229


>gi|144897804|emb|CAM74668.1| peptidyl-prolyl cis/trans isomerase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 212

 Score = 62.4 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 6/86 (6%), Positives = 20/86 (23%), Gaps = 1/86 (1%)

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
           +  +  +++     +I   +           +    +        G         +  +F
Sbjct: 124 MHSSAERSKAEALAQINAIKADIAAGADFAKQAIDHSDCPSGREGGDLGDFGRGQMVGEF 183

Query: 247 QNLLKK-SQNNTTNPYVTQKGVEYIA 271
           +           ++   T  G   I 
Sbjct: 184 ETAAFALDVGQISDVVETPFGYHLIQ 209



 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/138 (9%), Positives = 32/138 (23%), Gaps = 9/138 (6%)

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
               S+     +++      I D +    +         + +        G         
Sbjct: 13  MYQGSMRSTATRSKDEALAMITDLKAQIAKGADFAQLAAQNSDCPSGREGGDLGTFGPGM 72

Query: 242 LHP-QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH 300
           + P         ++   ++   T  G   I     R +       +++      +     
Sbjct: 73  MVPDFDAAAFALAEGEISDVVETPFGFHLIQ----RTVPEAQIRASHILLMYEGSMHSSA 128

Query: 301 EAEYVKKLRS----NAII 314
           E    + L       A I
Sbjct: 129 ERSKAEALAQINAIKADI 146


>gi|255570207|ref|XP_002526064.1| rotamase, putative [Ricinus communis]
 gi|223534645|gb|EEF36341.1| rotamase, putative [Ricinus communis]
          Length = 294

 Score = 62.4 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 9/108 (8%), Positives = 32/108 (29%), Gaps = 1/108 (0%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN 255
               K + + ++         +    ++        G   ++ + ++ P+F+     +  
Sbjct: 98  EDDLKLLVELQQRIAGGEDLSDLAVDYSICPSKAEGGMLGWVRKGEMVPEFEEAAFNAPL 157

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALK-AYLSAQNTPTKIEKHEA 302
           N      T+ G   + +   R+      ++      +    K  +   
Sbjct: 158 NKVVKCKTKFGWHLLQVLSDREESVLKDIQPDEFHVKMQDPKFVEEAQ 205


>gi|241889428|ref|ZP_04776729.1| peptidylprolyl isomerase PrsA1 [Gemella haemolysans ATCC 10379]
 gi|241863971|gb|EER68352.1| peptidylprolyl isomerase PrsA1 [Gemella haemolysans ATCC 10379]
          Length = 312

 Score = 62.4 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 85/275 (30%), Gaps = 24/275 (8%)

Query: 13  IKLLTTYFV-LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
           +K      + + +   V  ++  S   +  I +      +T+ DI + I          +
Sbjct: 1   MKKFKKAILPIALSISVIGLAGCSAGGTKYISSKAGD--VTEKDIVESI-------GASQ 51

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           L K A   +I + L     +K     D  +++    +     G   +       +Q +  
Sbjct: 52  LSKTATSMMIQKVLL----DKYKNKIDQKSIDEQLQKAQEQYGGKDKF------EQLLKQ 101

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
             F        +     +   +  Y     E      +          I   + S  +  
Sbjct: 102 QGFTLDKYKDGLKVKAAQTLLINDYAGTNDEKLKESYEKNKHQYHLAHILISVKSESNPN 161

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLE--SDLHPQFQN 248
             +    +K+ +D  +            ++ +    +  + G   +  +  +    +F++
Sbjct: 162 GLSDEEAKKKAEDVLKKLKDGGDFATLAKENSNDTANASNGGDLGWSSKEDNSFVKEFKD 221

Query: 249 LLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEI 282
                S++ T++   T  G   I + D++D   + 
Sbjct: 222 AAYALSKDKTSDVVKTSFGYHIIKVLDEKDSSFDE 256


>gi|163751092|ref|ZP_02158322.1| peptidyl-prolyl cis-trans isomerase C [Shewanella benthica KT99]
 gi|161329048|gb|EDQ00120.1| peptidyl-prolyl cis-trans isomerase C [Shewanella benthica KT99]
          Length = 92

 Score = 62.4 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 9/78 (11%), Positives = 26/78 (33%), Gaps = 1/78 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNT 257
           +++ +  ++  L      +  +  +S       G         +  +F  ++  +  N  
Sbjct: 14  EEKCEALKQEILGGADFADVAKANSSCPSSAQGGDLGSFGPGMMVKEFDAVVFHAPLNEV 73

Query: 258 TNPYVTQKGVEYIAICDK 275
             P  TQ G   + +  +
Sbjct: 74  QGPVKTQFGYHLLEVTSR 91


>gi|95930881|ref|ZP_01313612.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133123|gb|EAT14791.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 664

 Score = 62.4 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/265 (11%), Positives = 76/265 (28%), Gaps = 18/265 (6%)

Query: 57  SKRIALLKLQKINGELEKIAVQE--LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
            + I++L  Q++  EL +   ++  L+  T  +   E      D         ++   + 
Sbjct: 155 EQYISVLSYQRMTPELFEQMQKQQMLVNLTQAQIRSEAVVTDEDVADEYRRLNENVNLSY 214

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK----------NDFMLKYGNLEMEIP 164
           ++ +  +         D     Y A Q  +    +           D++ +    E +I 
Sbjct: 215 VAFKTGAFTDAVDVTDDALTAYYEANQEAFRVAQQVNLSLVTLSPADYLDQVVLEEGDIQ 274

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL--PKDCNKLEKF 222
               +          +      IP  +  +    +K+   AE+   +          +++
Sbjct: 275 RYYDRHLATYAIPEQMAAAHILIPVAQDADDAQREKQRVLAEQVLEKAQTGDFAKLAKQY 334

Query: 223 A-SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN-TTNPYVTQKGVEYIAICDKRDL-- 278
           +         G         + P F+      Q +  +    T+ G   I   +  +   
Sbjct: 335 SADTATAQKGGDLGLFQRGVMDPAFEAAAFALQKDALSPIVETRFGYHIIKGGEHIEAGF 394

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAE 303
                ++  +       +  K   E
Sbjct: 395 TPLADVRDEVEKALRLDEARKLAYE 419



 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/196 (7%), Positives = 54/196 (27%), Gaps = 18/196 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSR---IRTTINGEVITDGDIS 57
           M   +       +  +  + ++  F     + +       R   +   +NG  I+     
Sbjct: 19  MLDLIRKKQKTTVVKVVFWVIIATFIGTIFLVWGKGRDQQRDITVAAQVNGTDISFEQFR 78

Query: 58  KRI-------------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
                                 +   +L + ++  LI + L  +E E+  ++   + +  
Sbjct: 79  TTYSNMYNLYHNLYGQNFTPELEKQLQLTRQSINLLIDQALLLEEAERMHVSISDDELVK 138

Query: 105 FFVQHARNTGLSAEDFSSFLD--KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
              +          +   ++             + +  Q +  ++ +     +    + +
Sbjct: 139 AIAEVPAFQVDGVFNKEQYISVLSYQRMTPELFEQMQKQQMLVNLTQAQIRSEAVVTDED 198

Query: 163 IPANKQKMKNITVREY 178
           +    +++       Y
Sbjct: 199 VADEYRRLNENVNLSY 214


>gi|325981594|ref|YP_004293996.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas sp.
           AL212]
 gi|325531113|gb|ADZ25834.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas sp.
           AL212]
          Length = 93

 Score = 62.4 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 6/80 (7%), Positives = 23/80 (28%), Gaps = 1/80 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-N 255
             +++  + +             ++ +        G+        +  +F  ++  +   
Sbjct: 12  KTEEQCNNLKAEIESGADFGTLAQEHSLCPSGKQGGELGEFGRGQMVQEFDTVVFSAPVG 71

Query: 256 NTTNPYVTQKGVEYIAICDK 275
               P  TQ G   + +  +
Sbjct: 72  EVQGPVKTQFGYHLLEVTQR 91


>gi|148925955|ref|ZP_01809642.1| major antigenic peptide PEB3\cell binding factor 2 [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|145844941|gb|EDK22045.1| major antigenic peptide PEB3\cell binding factor 2 [Campylobacter
           jejuni subsp. jejuni CG8486]
          Length = 207

 Score = 62.4 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/203 (11%), Positives = 64/203 (31%), Gaps = 8/203 (3%)

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
             +   + +       +   A  +I  +V +   +        ++ A   + K+  V+  
Sbjct: 7   QDAKKQNLEKDPLYTKELDRAKDAILVNVYQEKILNTIKIDAAKVKAFYDQNKDKYVKPA 66

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYL 237
            ++     +   K       + +    +E   +  +     ++ +         G+  + 
Sbjct: 67  RVQAKHILVATEKEAKDIINELKGLKGKELDAKFSE---LAKEKSIDPGSKNQGGELGWF 123

Query: 238 LESDLHPQFQNLLKKSQNN--TTNPYVTQKGVEYIAICD--KRDLGGEIALKAYLSAQNT 293
            +S +   F +     +N   TT P  T  G   I   +   +       +K  +     
Sbjct: 124 DQSTMVKPFTDAAFALKNGTITTTPVKTNFGYHVILKENSQAKGQIKFDEVKQGIENGLK 183

Query: 294 PTKIEKHEAEYVKKLRSNAIIHY 316
             + +K   +  + L ++A + Y
Sbjct: 184 FEEFKKVINQKGQDLLNSAKVEY 206


>gi|330721601|gb|EGG99623.1| Peptidyl-prolyl cis-trans isomerase ppiC [gamma proteobacterium
           IMCC2047]
          Length = 93

 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 8/81 (9%), Positives = 24/81 (29%), Gaps = 1/81 (1%)

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNN 256
            +++ +  +             ++ +S       G         +  +F + +     N 
Sbjct: 13  TEEQCQQIKTDIENGADFGEMAKQHSSCPSGGRGGDLGEFGPGQMVREFDEVVFSAPLNT 72

Query: 257 TTNPYVTQKGVEYIAICDKRD 277
              P  TQ G   + +  + +
Sbjct: 73  VQGPVKTQFGYHLLEVTSRTE 93


>gi|71277915|ref|YP_270304.1| peptidyl-prolyl cis-trans isomerase C [Colwellia psychrerythraea
           34H]
 gi|71143655|gb|AAZ24128.1| peptidyl-prolyl cis-trans isomerase C [Colwellia psychrerythraea
           34H]
          Length = 92

 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 8/80 (10%), Positives = 25/80 (31%), Gaps = 1/80 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-N 255
             +++    +             ++ ++   +   G         + P+F  ++  +  N
Sbjct: 12  DTEEKCLALKAEIEAGKDFAEVAKEHSNCPSNAQGGDLGSFGPGQMVPEFDKVVFSAPLN 71

Query: 256 NTTNPYVTQKGVEYIAICDK 275
               P  TQ G   + +  +
Sbjct: 72  TVQGPVQTQFGYHLLEVTAR 91


>gi|289666150|ref|ZP_06487731.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 294

 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/252 (9%), Positives = 65/252 (25%), Gaps = 12/252 (4%)

Query: 66  QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
           +     + +I  Q L  +  +   +      F+  +             L   + +  + 
Sbjct: 32  RSNQAPVLQIGKQSLDAQEYRALALAGLPQDFNPASAADPEFVREFADRLLLVEQARRVH 91

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
            Q       +   A  +I    V+            +I A      +     +L    + 
Sbjct: 92  LQDDPVVAARIRQATDAILAKAVQTRARESARIDASQIKAQFDAHPHDYDEVHLSHLFVA 151

Query: 186 SIPDNKLQ-----NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKA-QYLL 238
             P  + +            R +  ++             + +         G+     L
Sbjct: 152 LKPQGEARRGTPLTDAQALARAQRLKQQLESGTPFAELAMRESDDGSTAAEGGELSPIFL 211

Query: 239 ESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE 298
            +        +   +    + P    +G   I +  +R    + A       Q      +
Sbjct: 212 RNVADAFVAPVQDLAVGQVSAPVRGPEGYHLIRVDARRPATLDSA-----RGQIEVQLRD 266

Query: 299 KHEAEYVKKLRS 310
           +  A+ +++LR 
Sbjct: 267 QAAADALEQLRQ 278


>gi|118595140|ref|ZP_01552487.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylophilales
           bacterium HTCC2181]
 gi|118440918|gb|EAV47545.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylophilales
           bacterium HTCC2181]
          Length = 262

 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/305 (14%), Positives = 86/305 (28%), Gaps = 52/305 (17%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDG--DISKRIALLKLQKINGEL 72
           ++  YF  I+     I S    A       ++N + I     +  K     + Q+++ ++
Sbjct: 1   MIRLYFYSILVLSALIHSSFINAE----IASVNDKQIKSSYLEFIKTEVSKQGQQVDKKM 56

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           E+  V  LI   +  Q+   SG+  +   V                              
Sbjct: 57  ERTIVNRLIDLEVINQKARSSGLLSNERVVAQA--------------------------- 89

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                L+ Q +   +   D+++     E E+     + K          + +     NK 
Sbjct: 90  ----ELSNQELIYTLYLQDYIINNPVTEEEVATAYNQYKAAFNESEFKASHILLTSKNKA 145

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHP-QFQNLL 250
           +             +            +K +       + G   +  +  +    F  + 
Sbjct: 146 E----------LIIKKLDAGESFGVLAKKESEDNDTKNNNGDLGWFSKETMVQSIFDAVK 195

Query: 251 KKSQNNT-TNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
                     P  TQ G   I + D R L  E   +            +    +++  LR
Sbjct: 196 NTGSGEIFPKPVKTQFGWHVIKVDDVRPLEVETFAQKE--EFIKTELQKIKLKQHLSLLR 253

Query: 310 SNAII 314
           S A I
Sbjct: 254 SGARI 258


>gi|307726843|ref|YP_003910056.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1003]
 gi|307587368|gb|ADN60765.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1003]
          Length = 259

 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/166 (8%), Positives = 43/166 (25%), Gaps = 9/166 (5%)

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE-----ESRLR 211
              E                   +R            + G ++KR +        E+   
Sbjct: 79  EPTEDACRRYHAAQPGRFAVGERVRARHVLFAVTPGLDIGALRKRAESCLLELRCENGTV 138

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKKSQNNTTNPYVTQKGVEY 269
             +        ++       G   +L   +  P+F  +   +       +   ++ G+  
Sbjct: 139 SDRFARVARDMSNCPSGAYGGDLGWLRIDECAPEFAKELFGRPDIGVLPHLVHSRFGLHV 198

Query: 270 IAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           + + ++    +     ++  ++             +Y+  L   A 
Sbjct: 199 VEVMERDPGIVPEFDTVREAVAQALRQQAFATALRQYISVLAGRAD 244


>gi|153809074|ref|ZP_01961742.1| hypothetical protein BACCAC_03382 [Bacteroides caccae ATCC 43185]
 gi|149128407|gb|EDM19626.1| hypothetical protein BACCAC_03382 [Bacteroides caccae ATCC 43185]
          Length = 515

 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/299 (10%), Positives = 80/299 (26%), Gaps = 43/299 (14%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           ++    ++  F    I  +   A    +   +NG+ I   +                   
Sbjct: 1   MMKRGLLVAWFWFFGISVF---AQEDPVLMRVNGKDILRSEFE----------------- 40

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
                                  D+      + +    + L  E                
Sbjct: 41  -------------YSYRHRTGNADAKLSPKEYAELFAQSKLKVEAAKVAGLDTTTMFRKL 87

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
           ++    Q +   +     +     +       + +          I  +   +P      
Sbjct: 88  QEAWRSQLLKSYLTDKQVLDSCIRV-----LYQDRGLKGLGSRVRIMQIFKYLPQTITAK 142

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-S 253
               +K   D+    LR   D +          D       +L       +F+N+    S
Sbjct: 143 HLEEEKNRIDSIWQSLRTQSDLDFARLVEMYSEDKRSM---WLERLQTTSEFENVAFSLS 199

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK-IEKHEAEYVKKLRSN 311
               ++P+ T +G+  I + D+++      +   L+ +    + ++K     V++L+ +
Sbjct: 200 TGEISHPFFTPEGLHIIKVIDRKENPSYGEVYEKLAERLIRKEGVDKATETIVERLKRD 258


>gi|148244746|ref|YP_001219440.1| peptidyl-prolyl cis-trans isomerase D [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326573|dbj|BAF61716.1| peptidyl-prolyl cis-trans isomerase D [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 615

 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/251 (7%), Positives = 60/251 (23%), Gaps = 15/251 (5%)

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
                      L+                +     + ++    +  +      +   K  
Sbjct: 153 QELRRTQIKSNLLDSAFITPSQLLRLQKLNDQKRKFSYIIIQTDNHIKEVKVDAQSVKDF 212

Query: 129 IGDNHFKQYLAIQSIWP--DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
             +     +   Q      ++  N+   K    + E+    +  +     E   +     
Sbjct: 213 YDNKKSLFFAPEQVKIEFIELSLNEIAKKIKVSDNELFNFYENEQENFTTEEERQAQHIL 272

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQ 245
           + D             +                ++++         G   +     + P+
Sbjct: 273 LTDELTA---------QKVVTLLDNGGDFVKLAKQYSQDSGSKDDAGNLGFFTRGIMVPE 323

Query: 246 FQNLLK-KSQNNTTNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEA 302
           F+  +        ++   ++ G   I + +   + L      K  +       + +K   
Sbjct: 324 FEKKVFAMKSGEVSDLVKSKFGYHIIKLNNIKVKTLKSFDIAKQEILDLYIQKQAQKVFY 383

Query: 303 EYVKKLRSNAI 313
              ++L S A 
Sbjct: 384 NLTEQLASLAY 394



 Score = 44.3 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 30/267 (11%), Positives = 85/267 (31%), Gaps = 15/267 (5%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +      +I  L    ++I F +  I  Y + A + +   + +G  I+  +     
Sbjct: 1   MLVSIRNKTKGWISYLIIGLIIIPFALFGISEYFTGASNIK-VASFDGVDISKEEFLSEF 59

Query: 61  ALLKLQKING-----------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
              K                  L++  + +++ + L +Q   K      ++ +N      
Sbjct: 60  NPQKRWLQKELDKKYDKKFDFILKQSILNQMLNKHLLEQLSRKLSYETTTSELNNII--- 116

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
             N     E   S    + +   +       ++I    ++   +         I  ++  
Sbjct: 117 RANDLFKEEGRFSLEKYKKLLRLNGYTTEKYETIKLQELRRTQIKSNLLDSAFITPSQLL 176

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
                  +    + +    DN ++      + +KD  +++  L     +++    ++   
Sbjct: 177 RLQKLNDQKRKFSYIIIQTDNHIKEVKVDAQSVKDFYDNKKSLFFAPEQVKIEFIELSLN 236

Query: 230 SIGKAQYLLESDLHPQFQNLLKKSQNN 256
            I K   + +++L   ++N  +     
Sbjct: 237 EIAKKIKVSDNELFNFYENEQENFTTE 263


>gi|167577892|ref|ZP_02370766.1| peptidylprolyl isomerase [Burkholderia thailandensis TXDOH]
          Length = 265

 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 42/161 (26%), Gaps = 4/161 (2%)

Query: 159 LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
            +      +         + +  + +     +        ++       +R         
Sbjct: 92  HDDCERYYRNHAARFRRHDIVHASHILFAVTDATPLALLRREAEAALARARAAPQTFETL 151

Query: 219 LEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKKSQNNTTNPYVTQKGVEYIAICDK- 275
             + ++       G    LL  D  P+F                  T+ G   + I  + 
Sbjct: 152 ARELSNCPSSAVGGNLGQLLRGDSVPEFDAAVFDTPELGVLPRLVNTRFGFHIVRIERRV 211

Query: 276 -RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             D     A+ A ++A        K   +YV  L S A I 
Sbjct: 212 PGDPVPFDAVAADIAAFLAQRVRHKAIQQYVTILASGARIE 252


>gi|167616017|ref|ZP_02384652.1| peptidylprolyl isomerase [Burkholderia thailandensis Bt4]
 gi|257142572|ref|ZP_05590834.1| peptidylprolyl isomerase [Burkholderia thailandensis E264]
          Length = 265

 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 41/161 (25%), Gaps = 4/161 (2%)

Query: 159 LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
            +      +         + +  + +     +        ++       +          
Sbjct: 92  HDDCERYYRNHAARFRRHDIVHASHILFAVTDATPLALLRREAEAALARALAAPQTFETL 151

Query: 219 LEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKKSQNNTTNPYVTQKGVEYIAICDK- 275
             + ++       G    LL  D  P+F                  T+ G   + I  + 
Sbjct: 152 ARELSNCPSSAVGGNLGQLLRGDSVPEFDAAVFDTPELGVLPRLVNTRFGFHIVRIERRV 211

Query: 276 -RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             D     A+ A ++A        K   +YV  L S A I 
Sbjct: 212 PGDPVPFDAVAADIAAFLAQRVRHKAIQQYVTILASGARIE 252


>gi|117929118|ref|YP_873669.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidothermus
           cellulolyticus 11B]
 gi|117649581|gb|ABK53683.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidothermus
           cellulolyticus 11B]
          Length = 321

 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/275 (9%), Positives = 60/275 (21%), Gaps = 41/275 (14%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL----- 63
           +  +   L    +      +                T+    ITD  + K   ++     
Sbjct: 1   MRRWHSPLLAAMLGTAALAISACGPAHPGA----AATVGDVRITDAQVQKAANVMLQDSG 56

Query: 64  ---KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
                Q     L +  +  LI + L ++     G+T     V +      +  G      
Sbjct: 57  TRAAAQADPAGLRRDVLTRLIKDVLLQRAAASRGVTVSEADVQHELALAEQQEG------ 110

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
                               Q                +        +     +T  + + 
Sbjct: 111 -----------------SRAQLEAAAASNGIAAADLHDYLYYYLLEQGLAAALTKDQVVA 153

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
              +  I          V  +                  ++++      + G    +   
Sbjct: 154 VAHVKVISLTDKSTADTVLAK------VTANPGDFAQLAKQYSQDQSAANGGDVGEVPID 207

Query: 241 DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK 275
            L    +  ++    NT        G   I + D+
Sbjct: 208 GLSDPLKTDIQNKPLNTPFLESDSSGYYIIMVVDR 242


>gi|83717644|ref|YP_439449.1| peptidylprolyl isomerase [Burkholderia thailandensis E264]
 gi|83651469|gb|ABC35533.1| peptidylprolyl isomerase [Burkholderia thailandensis E264]
          Length = 250

 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 41/161 (25%), Gaps = 4/161 (2%)

Query: 159 LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
            +      +         + +  + +     +        ++       +          
Sbjct: 77  HDDCERYYRNHAARFRRHDIVHASHILFAVTDATPLALLRREAEAALARALAAPQTFETL 136

Query: 219 LEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKKSQNNTTNPYVTQKGVEYIAICDK- 275
             + ++       G    LL  D  P+F                  T+ G   + I  + 
Sbjct: 137 ARELSNCPSSAVGGNLGQLLRGDSVPEFDAAVFDTPELGVLPRLVNTRFGFHIVRIERRV 196

Query: 276 -RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             D     A+ A ++A        K   +YV  L S A I 
Sbjct: 197 PGDPVPFDAVAADIAAFLAQRVRHKAIQQYVTILASGARIE 237


>gi|167828135|ref|ZP_02459606.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 9]
          Length = 190

 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 44/174 (25%), Gaps = 5/174 (2%)

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           ++  +                        R  ++                 +++  +   
Sbjct: 4   LLARELTPLPEPTRDACERYYLNHAARFRRRDIVYASHILFAVTDATPLAPLRREAEATL 63

Query: 207 ESRLRLPKDCNK-LEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKKSQNNTTNPYVT 263
              L  P+       + ++       G    LL  D  P+F                  T
Sbjct: 64  ARVLAEPQTFEARARELSNCPSAQVGGSLGQLLRGDSVPEFDAAVFDTTDSGVLPRLVNT 123

Query: 264 QKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           + G   + I  +   D     A+ A ++A        K   +YV  L S A I 
Sbjct: 124 RFGFHIVRIERRVPGDPVPFDAVAAEIAAFLAERVRHKAIQQYVTILASGARIE 177


>gi|261343042|ref|ZP_05970900.1| peptidyl-prolyl cis-trans isomerase [Enterobacter cancerogenus ATCC
           35316]
 gi|288314605|gb|EFC53543.1| peptidyl-prolyl cis-trans isomerase [Enterobacter cancerogenus ATCC
           35316]
          Length = 93

 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 1/81 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +K  +D  E            +K +        G      +  + P F + +      
Sbjct: 13  KEEKLAQDLLEQLKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVL 72

Query: 256 NTTNPYVTQKGVEYIAICDKR 276
             T P  TQ G   I +  ++
Sbjct: 73  EPTGPLHTQFGYHVIKVLYRK 93


>gi|70730930|ref|YP_260671.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas fluorescens
           Pf-5]
 gi|68345229|gb|AAY92835.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas fluorescens
           Pf-5]
          Length = 93

 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 9/82 (10%), Positives = 25/82 (30%), Gaps = 1/82 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             + +  + +             +K ++       G         +  +F  ++  +  N
Sbjct: 12  ASEAKCNELKAEIEAGADFAEVAKKNSTCPSSRDGGNLGSFGPGQMVKEFDTVVFSAPVN 71

Query: 257 TT-NPYVTQKGVEYIAICDKRD 277
               P  TQ G   + +  ++D
Sbjct: 72  VVQGPVKTQFGYHLLEVTSRQD 93


>gi|316956573|gb|EFV46854.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Trichinella
           spiralis]
          Length = 183

 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/158 (7%), Positives = 32/158 (20%), Gaps = 2/158 (1%)

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
           G          +         +         P +          +         +    +
Sbjct: 23  GWEKRMSRKTGEPYYYNVYSHESQWRRP-TEPALPNMSSASSSSSSSTSRNEQVKCSHIL 81

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGK 233
              +   R   +         +  +       +E      +      K++      + G 
Sbjct: 82  VKHKNSRRPSSWKEAVITRSKEDALHLIQAYRDEISSGKAEFRTLASKYSDCSSAKNGGD 141

Query: 234 AQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYI 270
             Y     +   F+           + P  T+ G+  I
Sbjct: 142 LGYFKRGQMQKPFEEAAFALTLGELSQPVETESGIHII 179


>gi|209884190|ref|YP_002288047.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oligotropha
           carboxidovorans OM5]
 gi|209872386|gb|ACI92182.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oligotropha
           carboxidovorans OM5]
          Length = 274

 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/278 (11%), Positives = 83/278 (29%), Gaps = 37/278 (13%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             ++NG VI    I++ +             + A + L+V  L  QE  + G        
Sbjct: 14  AISVNGVVIAREAIAQEVQNHPA-DKPIHAWQAAARALVVRELLLQEAARLG-------- 64

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                ++ + + D   ++  A ++    +V+ +      +    
Sbjct: 65  ---------------------IETEPLCDPDGRRETAEEAAMRALVEREVKTPEPDEATC 103

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD--CNKLE 220
               +Q ++     +      +        +      +   +   + ++       +   
Sbjct: 104 RRFYEQHLQRFRTGDLYEVAHILIAASRGDEAARLAARASAETILAAVKADPHVFADMAS 163

Query: 221 KFAS-KIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR--- 276
             ++        G+   +      P+F+ +L++ Q        T+ G   + + D+R   
Sbjct: 164 NHSACSTSAAEGGRLGQITRGQTVPEFEAVLERMQPGEIAIAETRYGFHVVRM-DRRAEG 222

Query: 277 DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                   K  ++     +   +  A+Y+  L   A I
Sbjct: 223 QTLPFELAKERIAGYLAASVEHRALAQYISILAGQAEI 260


>gi|316964063|gb|EFV49351.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Trichinella
           spiralis]
          Length = 183

 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/158 (7%), Positives = 32/158 (20%), Gaps = 2/158 (1%)

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
           G          +         +         P +          +         +    +
Sbjct: 23  GWEKRMSRKTGEPYYYNVYSHESQWRRP-TEPALPNMSSASSSSSSSTSRNEQVKCSHIL 81

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGK 233
              +   R   +         +  +       +E      +      K++      + G 
Sbjct: 82  VKHKNSRRPSSWKEAVITRSKEDALHLIQAYRDEISSGKAEFRTLASKYSDCSSAKNGGD 141

Query: 234 AQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYI 270
             Y     +   F+           + P  T+ G+  I
Sbjct: 142 LGYFKRGQMQKPFEEAAFALTLGELSQPVETESGIHII 179


>gi|257455225|ref|ZP_05620460.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enhydrobacter
           aerosaccus SK60]
 gi|257447187|gb|EEV22195.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enhydrobacter
           aerosaccus SK60]
          Length = 622

 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/400 (10%), Positives = 97/400 (24%), Gaps = 89/400 (22%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTIN----GEVITDGDIS 57
              +   L  ++        L+   I    S             +             I+
Sbjct: 1   MESLRNFLKGWMGKALLVLFLLPLAITGFESIVRSGDDPNAVAKVAELNVDNATLQTMIN 60

Query: 58  KRIALLKLQ-------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
            R   L  Q         + +L +  +  LI   L   +  + G T    T+    +   
Sbjct: 61  NRRETLLEQVNGDASLLNSDKLREQMLHNLIDRYLIINQANQLGFTVSDATITQMLMAEK 120

Query: 111 ----RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP--------------------- 145
                +   S E F+S+L  +G+        +    +                       
Sbjct: 121 TFQDASGKFSNELFASYLTSRGMTKEQLFDSVRQDLLVTAFSRGIINTGIFAQGSIDKLM 180

Query: 146 ------------DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                        +  + F  +      EI +  QK +       ++      +  N L 
Sbjct: 181 SMQSESRPVQVLRLDWHSFAPQVQVTPQEIASYYQKNQATLKSSDMVDLTYLELNKNALP 240

Query: 194 NQGFVQKRIKDAEESRLRL----------------------------------PKDCNKL 219
                 + ++   +S L+                                          
Sbjct: 241 VAAPTAQELQQQYQSYLKNSNNQTEYELAMILMNGSQAQATLTSLKSKLDANQADFAALA 300

Query: 220 EKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK----SQNNTTNPYVTQKGVEYIAICD 274
           ++++         G    + +S     +  ++ +         T+P  T  G     +  
Sbjct: 301 KQYSQDEGSKNDGGNIGPITQSMFPNDYDTIMTQIKTLKVGQVTSPIKTNYGYHLFKLVK 360

Query: 275 K--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
              +      +L   L+ Q    K E    + + K+ ++A
Sbjct: 361 INGQTPPTIESLAPVLTEQIMAQKREAAYQDLIGKINNDA 400


>gi|217075350|gb|ACJ86035.1| unknown [Medicago truncatula]
          Length = 144

 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 10/103 (9%), Positives = 28/103 (27%), Gaps = 2/103 (1%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
                R +L        +    +Q    D  +      +     ++++        G   
Sbjct: 43  TYVKARHILCEKQGKINEAYKKLQDGWLDNGDKVP-PAEFAKVAQEYSECPSGKKGGDLG 101

Query: 236 YLLESDLH-PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
           +     +  P  +         T+ P+ +  G   I    +++
Sbjct: 102 WFPRGKMAGPFQEVAFNTPVGVTSAPFKSTHGYHIILSEGRKN 144


>gi|299139204|ref|ZP_07032380.1| conserved hypothetical protein [Acidobacterium sp. MP5ACTX8]
 gi|298598884|gb|EFI55046.1| conserved hypothetical protein [Acidobacterium sp. MP5ACTX8]
          Length = 262

 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 48/154 (31%), Gaps = 12/154 (7%)

Query: 26  CIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ----KINGELEKIAVQELI 81
            + P +         R+   +NG++I D D+++   L   Q             A++ LI
Sbjct: 48  AVAPQMPLAQGMALDRVVAIVNGDLILDSDVNEETRLQVFQPYRNPNADTSRDRAIERLI 107

Query: 82  VETLKKQE--------IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
             +L  Q+        I    +  D + +             + + ++ FL   G  +  
Sbjct: 108 NRSLILQQLKLQPEDPITDDQVRKDLDNLRKNIPACKPYNCETPDGWNKFLATNGFTEAT 167

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
                  +      ++  F L       EI +  
Sbjct: 168 LISRWRSRMEVLRFIEERFRLGIKVKPEEIKSYY 201


>gi|317053465|ref|YP_004119232.1| nitrogen fixation protein NifM [Pantoea sp. At-9b]
 gi|255761142|gb|ACU32741.1| nitrogen fixation cis-trans peptidyl prolyl isomerase [Pantoea sp.
           At-9b]
 gi|316953204|gb|ADU72676.1| nitrogen fixation protein NifM [Pantoea sp. At-9b]
          Length = 261

 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/263 (7%), Positives = 69/263 (26%), Gaps = 8/263 (3%)

Query: 54  GDISKRIALLKLQKI--NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
            ++ +R + ++L +     + + ++V +L       Q   +        T      +   
Sbjct: 2   SELWERFSRMQLAQTRWQCQPDSLSVSQLAEFNRLWQRQRQMEYAVAGATGEELIPETCL 61

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
               ++             +         +    ++       +    +        +  
Sbjct: 62  ANMTTSLSPLLSTHDFSAAERLSIIQHHTRM---EIQLARVAEQAPVPDDLQVLAWYRRH 118

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
                    R     +           ++  +   +         +  ++++     +  
Sbjct: 119 QGQFMRPEQRLCWHLLLTTDQDGPAVHRQMQQLRLQITNNRQAFSSLAQRWSHCPSALEG 178

Query: 232 GKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA--YL 288
           G+  ++    L     + L     N  + P  TQ G   +     R         A   +
Sbjct: 179 GRMGWIGRGLLYPELEEVLFAMKPNAVSQPIATQLGWHLLWCEMIRPPAPMEQEAALTRV 238

Query: 289 SAQNTPTKIEKHEAEYVKKLRSN 311
            +  T    ++ + +++K+L   
Sbjct: 239 RSLLTRQNQQQWQRQWLKQLLEK 261


>gi|160947370|ref|ZP_02094537.1| hypothetical protein PEPMIC_01304 [Parvimonas micra ATCC 33270]
 gi|158446504|gb|EDP23499.1| hypothetical protein PEPMIC_01304 [Parvimonas micra ATCC 33270]
          Length = 328

 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/323 (9%), Positives = 79/323 (24%), Gaps = 25/323 (7%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           + +      +   L    +    S    AM       I  + IT   + K    + +   
Sbjct: 1   MKNRFIKFASAIALSAMLLTACASAPRGAM-----VKIGEKYITKDQVQKEYDRVIVSYS 55

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
           + +  K        +       +     F +  V                     + K  
Sbjct: 56  DEQKAKYDESTEEGKKASLTLKQNILDMFSNIEVVKQKFAKLEKEYKDEGKSEEEIAKVS 115

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
           + +      LA          N+ + K    E E+    +     T  +           
Sbjct: 116 VTEQEINDNLAKVKEQLGDKFNEELEKAKLTEDELKYKIEDNLYSTKFQTWFSENYDPTD 175

Query: 189 DNKLQNQG----------------FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV-SI 231
           +  ++                     ++  K  +       K  +   + +       + 
Sbjct: 176 EEIMEKYKGSDFDGPQINASHILVENEEDAKKVKSRLEAGEKFEDVATEVSKDPSAKKNK 235

Query: 232 GKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYL 288
           G      +  +  +F +   K      ++P  T+ G   I + +  +   +     K  +
Sbjct: 236 GVLGTFTKGVMVKEFYDAAVKLKVGEISDPVKTKFGYHIIKLNEIVEDYDKFSDESKKRI 295

Query: 289 SAQNTPTKIEKHEAEYVKKLRSN 311
                 + + +      +K++  
Sbjct: 296 KQNLKKSLLSEKFKTEFEKIQKE 318


>gi|261327012|emb|CBH09987.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, putative
           [Trypanosoma brucei gambiense DAL972]
          Length = 122

 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 3/82 (3%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKKSQ 254
               R  +A E         N    ++      S G   ++    +  +F  +       
Sbjct: 42  EKLSRALEALEKIKAGESFANVARDYSED-KARSGGDLGWVTRGAMVGEFSEKAFALPKG 100

Query: 255 NNTTNPYVTQKGVEYIAICDKR 276
             T  P  T+ G   I + DK+
Sbjct: 101 GMTQEPVKTKFGYHIIFVEDKQ 122


>gi|72386957|ref|XP_843903.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Trypanosoma
           brucei TREU927]
 gi|62359031|gb|AAX79480.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, putative
           [Trypanosoma brucei]
 gi|70800435|gb|AAZ10344.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, putative
           [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
          Length = 122

 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 3/82 (3%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKKSQ 254
               R  +A E         N    ++      S G   ++    +  +F  +       
Sbjct: 42  EKLSRALEALEKIKAGESFANVARDYSED-KARSGGDLGWVTRGAMVGEFSEKAFALPKG 100

Query: 255 NNTTNPYVTQKGVEYIAICDKR 276
             T  P  T+ G   I + DK+
Sbjct: 101 GMTQEPVKTKFGYHIIFVEDKQ 122


>gi|313901127|ref|ZP_07834615.1| PPIC-type PPIASE domain protein [Clostridium sp. HGF2]
 gi|312954085|gb|EFR35765.1| PPIC-type PPIASE domain protein [Clostridium sp. HGF2]
          Length = 332

 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/326 (13%), Positives = 88/326 (26%), Gaps = 30/326 (9%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVS----------YKSWAMSSRIRTTINGEVITDGDISK 58
           +    K      + +IF    I S           KS      +        IT  ++  
Sbjct: 2   IKILKKQWFVVLIALIFIGFAIFSVYDTNKGKLPGKSVDGKDVVAGLKGDVNITADEL-- 59

Query: 59  RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
               L        L      E+I  ++K  +  K       + +       A ++G  AE
Sbjct: 60  -YKNLSKTYGKSMLFMKFQAEVINSSIKTTDELKKTAEEYESNIKQSAESQAASSGTDAE 118

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
              S    Q    +       +     + ++ND++ K+                   +  
Sbjct: 119 ALISQNIAQYGFTSDQLYDYCMTVAKMEKMQNDYISKH-------LDELFTPIYKEKKSR 171

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
            +  +L  + D     +  ++K     E++  +     +  +K++        G   Y+ 
Sbjct: 172 TVSHILIKMEDANKPTKKELEKVQ-KVEDALKKGDSFADVAKKYSDDGSASDGGYLGYMD 230

Query: 239 ESD--LHPQFQNLLKKSQNNTTNPYVTQ----KGVEYIAIC--DKRDLGGEIALKAYLSA 290
                +        K     T++          G   I +   DK  L  +   K  L  
Sbjct: 231 SDTSYVDSFKNAAFKLKAKETSDWVKESNDSYNGWHLIKVEETDKAKLEKDKKAKDSLYK 290

Query: 291 QNTPTKIEKHEAEYVKKLRSNAIIHY 316
                  E     Y+ +      I Y
Sbjct: 291 AIANG-TENLSNTYLWEAAKKLDIKY 315


>gi|50084586|ref|YP_046096.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase)
           [Acinetobacter sp. ADP1]
 gi|2623969|emb|CAA05330.1| putative peptidyl-prolyl cis-trans isomerase [Acinetobacter sp.
           ADP1]
 gi|49530562|emb|CAG68274.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase)
           [Acinetobacter sp. ADP1]
          Length = 622

 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 66/232 (28%), Gaps = 6/232 (2%)

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           L+ +    Q           +  +     + +N  ++ ++ + + +K             
Sbjct: 169 LVSKFDLHQIAVLQTEQRTIHLASIKLDDYKKNINVTNQEIADYYNKHKNKFKQVASVDV 228

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
              +      +         E++   N          + L++ +L +      ++    Q
Sbjct: 229 DYIVVSPAQVSSAPAAVTEAELQQAYNAFVETQKKDAKRLVKHILITA---DGRSDAEAQ 285

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNT 257
           K   D               ++++       + G             F   ++       
Sbjct: 286 KIANDVYAKIQAGTHFSEAAKQYSDDTSSKNNGGVVDAYQPGIFSKDFDQAVESLKNGQV 345

Query: 258 TNPYVTQKGVEYIAICDKR-DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
           + P  TQ G   I +   +  L    A KA L+A+   +K      + + +L
Sbjct: 346 SKPVKTQYGYHIIEVETAQVKLPSLEAEKARLTAEIQKSKSANAYTDTINRL 397



 Score = 58.1 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/318 (11%), Positives = 88/318 (27%), Gaps = 19/318 (5%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
                  +  ++  +     L    +V I  Y      + +  T+NG+ I+  D+     
Sbjct: 1   MESFRKVIKGWLGKVLLILFLTPLALVGIEGYFGGGNKADVAKTVNGQDISKKDLENLTK 60

Query: 62  LLKLQK-----------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
             K Q                +E+ A+  LI  +L  Q+ EK GI+     +     Q  
Sbjct: 61  TYKDQYLSLAKGDETLLNQSYIEENALNTLIARSLLLQQAEKLGISLSDAQIEKMLAQQP 120

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                     + + +         +  +A   +  D           +  +    +  ++
Sbjct: 121 SFQENGKFSETLYSNYLRSVGMTSQALIAS--LRQDHALKMLTSSVTDTALVSKFDLHQI 178

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS 230
             +   +  I      + D K       Q+      + + +  +  +    +        
Sbjct: 179 AVLQTEQRTIHLASIKLDDYKKNINVTNQEIADYYNKHKNKFKQVASVDVDYIVVSPAQV 238

Query: 231 IGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA 290
                 + E++L   +   ++  + +             +   D R       +   + A
Sbjct: 239 SSAPAAVTEAELQQAYNAFVETQKKDAKRLVK-----HILITADGRSDAEAQKIANDVYA 293

Query: 291 QNTP-TKIEKHEAEYVKK 307
           +    T   +   +Y   
Sbjct: 294 KIQAGTHFSEAAKQYSDD 311


>gi|163846602|ref|YP_001634646.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222524398|ref|YP_002568869.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus sp.
           Y-400-fl]
 gi|163667891|gb|ABY34257.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222448277|gb|ACM52543.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus sp.
           Y-400-fl]
          Length = 490

 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/204 (7%), Positives = 43/204 (21%), Gaps = 28/204 (13%)

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                 +    Q++     +     +       +                 R +L ++  
Sbjct: 238 RQPELSKDEFRQALLDQYRERLLNEQIQ---ARLVPEDGFTYKTEAERVSARQILVAVTP 294

Query: 190 NKLQNQGFVQKRI-------KDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESD 241
                   ++          ++                + +  I    + G       + 
Sbjct: 295 PAEATPEQIEAAFAAALPAAQEIVAQLRNGADFATLAAERSDDIGSRENGGDIGSFDRNG 354

Query: 242 L--------HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNT 293
                                N  ++P  TQ G   + I D+     E            
Sbjct: 355 FADNGATYPPELVAAAFSLPVNQVSDPIRTQFGWHILEITDQTIPSQEEQ---------L 405

Query: 294 PTKIEKHEAEYVKKLRSNAIIHYY 317
                +    ++ + R+ A +  +
Sbjct: 406 SQARTEAFDRWIAEQRAAADVRRF 429


>gi|152972768|ref|YP_001337914.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238892379|ref|YP_002917113.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262040911|ref|ZP_06014137.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330012127|ref|ZP_08307289.1| peptidyl-prolyl cis-trans isomerase [Klebsiella sp. MS 92-3]
 gi|150957617|gb|ABR79647.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238544695|dbj|BAH61046.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259041800|gb|EEW42845.1| peptidyl-prolyl cis-trans isomerase C [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328533942|gb|EGF60601.1| peptidyl-prolyl cis-trans isomerase [Klebsiella sp. MS 92-3]
          Length = 93

 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 10/81 (12%), Positives = 24/81 (29%), Gaps = 1/81 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +K   +      R     +  ++++      + G      +  +   F Q +      
Sbjct: 13  KEEKLALEILAKLERGVSFDHLAKRYSKCPSGRNGGDLGEFQQGAMVGPFDQAVFSCPLL 72

Query: 256 NTTNPYVTQKGVEYIAICDKR 276
               P  T+ G   I +  +R
Sbjct: 73  KPYGPVKTKFGYHIIKVLYRR 93


>gi|127513398|ref|YP_001094595.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella loihica
           PV-4]
 gi|126638693|gb|ABO24336.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella loihica
           PV-4]
          Length = 92

 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 9/78 (11%), Positives = 22/78 (28%), Gaps = 1/78 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           ++     ++  L         +  +S       G         +  +F + +     N  
Sbjct: 14  EEECAQIKQQILDGADFGEMAKAHSSCPSGAQGGDLGSFGPGMMVREFDEVVFSAPLNEV 73

Query: 258 TNPYVTQKGVEYIAICDK 275
             P  TQ G   + +  +
Sbjct: 74  QGPVKTQFGYHLLEVTSR 91


>gi|41152183|ref|NP_957042.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Danio
           rerio]
 gi|37747984|gb|AAH59553.1| Protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1
           [Danio rerio]
          Length = 159

 Score = 62.0 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/106 (11%), Positives = 29/106 (27%), Gaps = 1/106 (0%)

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
             +    +       R   +   +        +Q   K  E+ +    +  +   +F+  
Sbjct: 50  KVRCSHLLVKHSQSRRPSSWREENITRSKDEALQLIQKYIEQIKSGEEEFESLASQFSDC 109

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
               + G         +   F++        + + P  T  GV  I
Sbjct: 110 SSARNGGDLGLFGRGQMQKPFEDASFALKVGDMSGPVFTDSGVHII 155


>gi|299132103|ref|ZP_07025298.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Afipia sp. 1NLS2]
 gi|298592240|gb|EFI52440.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Afipia sp. 1NLS2]
          Length = 274

 Score = 61.6 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 81/277 (29%), Gaps = 35/277 (12%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             ++NG VI+   I++ +             + A + L+V  L  QE  + G        
Sbjct: 14  AISVNGVVISREAIAQEVQNHPA-DKPIHAWQAAARALVVRELLLQEAARLG-------- 64

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM-LKYGNLEM 161
                                ++ + + D   ++  A ++    +V+ +    +      
Sbjct: 65  ---------------------IETEALCDPDGRRETAEEAAMRALVEREVKTPEPDEAAC 103

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ-GFVQKRIKDAEESRLRLPKDCNKLE 220
                +   +      Y    +L + P +    +    ++        +       +   
Sbjct: 104 RRFYEQNIQRFRLGDLYEAAHILIAAPRDNQAARVAAREQAETILAAVKENPAVFADMAS 163

Query: 221 KFAS-KIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
             ++        G+   +       +F+  L++ Q        T+ G   + +  + +  
Sbjct: 164 NHSACSTSAAEGGRLGQISRGQTVAEFEAALERMQPGEMAIAETRYGFHVVRLDRRAEGQ 223

Query: 280 --GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                  K  ++     +   +  A+Y+  L   A I
Sbjct: 224 TLPFELAKERIAGYLATSVEHRALAQYISILAGQAEI 260


>gi|307571805|emb|CAR84984.1| protein export peptidyl-prolyl isomerase protein [Listeria
           monocytogenes L99]
          Length = 279

 Score = 61.6 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/290 (9%), Positives = 78/290 (26%), Gaps = 40/290 (13%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
           + S  +      +  T +   +T  ++   +          +     VQ+L  E +   +
Sbjct: 1   MFSLAACGGGGDVVKT-DSGDVTKDELYDAMK--------DKYGSEFVQQLTFEKILGDK 51

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
            + S    D            +        +              ++    Q  +  +V+
Sbjct: 52  YKVSDEDVD------------KKFNEYKSQYGDQFSAVLAQSGLTEKSFKSQLKYNLLVQ 99

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
                     +  +    +                +             + + K+ E+  
Sbjct: 100 KATEANTDTSDKVLKKYYET---------------WQPDITVSHILVADENKAKEVEQKL 144

Query: 210 LRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKG 266
               K  +  +++++      + G+        + P F+      K++ + + P  TQ G
Sbjct: 145 KDGAKFADLAKEYSTDTATKENGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYG 204

Query: 267 VEYIAICDKRDLGGEIALKAYLSA-QNTPTKIEKHEAEYVKKLRSNAIIH 315
              I +            K  + A         ++  + +KK   +A + 
Sbjct: 205 YHIIQMDKPATKTTFEKDKKAVKASYLESQLTTENMQKTLKKEYKDANVK 254


>gi|301021433|ref|ZP_07185457.1| PPIC-type PPIASE domain protein [Escherichia coli MS 69-1]
 gi|300398069|gb|EFJ81607.1| PPIC-type PPIASE domain protein [Escherichia coli MS 69-1]
          Length = 93

 Score = 61.6 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 21/78 (26%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +K   +  +            +K +        G      +  + P F + +      
Sbjct: 13  KEEKLALELLDQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVL 72

Query: 256 NTTNPYVTQKGVEYIAIC 273
             T P  TQ G   I + 
Sbjct: 73  EPTGPLHTQFGYHIIKVL 90


>gi|15616760|ref|NP_239972.1| survival protein SurA precursor [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11387168|sp|P57240|SURA_BUCAI RecName: Full=Chaperone surA homolog; Flags: Precursor
 gi|25403557|pir||B84946 peptidylprolyl isomerase (EC 5.2.1.8) surA [imported] - Buchnera
           sp. (strain APS)
 gi|10038823|dbj|BAB12858.1| survival protein surA precursor [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 430

 Score = 61.6 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 46/157 (29%), Gaps = 3/157 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +  N    K   +            P   L N    +K     E  +  +    + ++  
Sbjct: 271 LKVNDIHHKKENIVTEFYMQHCLIKPSVILTNTEAKKKIFNIYENIKKGIYTFDDAVKNL 330

Query: 223 ASKI-HDVSIGKAQYLLESDLH-PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           +         G   ++ +  L     +  L   +N  + P  +  G     I D+R +  
Sbjct: 331 SDDYYSSNKKGDLGWISKESLGFDLNKKFLILDKNEISEPVKSNWGWHIFKILDRRQVDA 390

Query: 281 E-IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                K          KI   +  +++ L++ A I  
Sbjct: 391 FYKLKKNQAFNIVLNQKIISEKNHWIEDLKNTAYIEI 427



 Score = 59.3 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 92/299 (30%), Gaps = 18/299 (6%)

Query: 33  YKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN-------GELEKIAVQELIVETL 85
                    I   +N E+I + D+++ +  LK  K           L++  +++LIV++L
Sbjct: 19  LAKNNQVDNITAIVNDEIILNSDVNEILVFLKKSKKKFIIPLKSDFLKEKVLEKLIVDSL 78

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF----LDKQGIGDNHFKQYLAIQ 141
             QE     I      ++      A    +S + F         K     ++F + + I 
Sbjct: 79  ILQEANSKNINITKEQIDTVIKNIALKKHISVDHFKKQILLRNIKNPSYYDNFIKKIEIL 138

Query: 142 SIWPDVVKNDFMLKYGNLEME---IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
                +   +   +    E E   I     K      +  L   +L S+  +        
Sbjct: 139 LKMKTIQDYELHKRINISEQEVNTIFKKLIKDNEKFKKINLSYILLPSLKQDSDNAVRNR 198

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNT 257
            K  ++      +       L +         + K  +    D+ +  F+ L    +   
Sbjct: 199 TKIAENIVYKLKKGYDFEKLLIECEKNKSTFIVKKMFWKPLLDIQNSFFKTLNIFKKGQI 258

Query: 258 TNPYVTQKGVEYIAICD---KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             P V  KG+  + + D   K++         +   + +         + +  +  N  
Sbjct: 259 LGPIVGDKGLYILKVNDIHHKKENIVTEFYMQHCLIKPSVILTNTEAKKKIFNIYENIK 317


>gi|332531965|ref|ZP_08407849.1| peptidyl-prolyl cis-trans isomerase PpiC [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038592|gb|EGI75035.1| peptidyl-prolyl cis-trans isomerase PpiC [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 93

 Score = 61.6 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 24/80 (30%), Gaps = 1/80 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           + +  D +    +        +  ++       G         + P+F + +     N  
Sbjct: 14  EAQCLDLKTKIEQGEDFAELAKAHSNCPSGQDGGALGEFGPGMMVPEFDKVVFSAPINQV 73

Query: 258 TNPYVTQKGVEYIAICDKRD 277
             P  TQ G   + +  + +
Sbjct: 74  QGPVQTQFGYHLLEVTSRSE 93


>gi|229590103|ref|YP_002872222.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens SBW25]
 gi|229361969|emb|CAY48869.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens SBW25]
          Length = 93

 Score = 61.6 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 9/81 (11%), Positives = 24/81 (29%), Gaps = 1/81 (1%)

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NN 256
            + +  + +             +  +S       G         +  +F  ++  +  N 
Sbjct: 13  TEDKCNELKAQIEGGADFAEIAKANSSCPSSRDGGNLGSFGPGQMVKEFDTVVFSAPVNT 72

Query: 257 TTNPYVTQKGVEYIAICDKRD 277
              P  TQ G   + +  ++D
Sbjct: 73  VQGPVKTQFGYHLLEVTSRQD 93


>gi|77361403|ref|YP_340978.1| peptidyl-prolyl cis-trans isomerase C (rotamase C)
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876314|emb|CAI87536.1| peptidyl-prolyl cis-trans isomerase C (rotamase C)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 93

 Score = 61.6 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 10/80 (12%), Positives = 25/80 (31%), Gaps = 1/80 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           + +  D +E   +        +  ++       G         + P+F + +     N  
Sbjct: 14  EAQCLDLKEKIEQGEDFAVLAKAHSNCPSGQDGGALGEFGPGMMVPEFDKVVFSAPINQV 73

Query: 258 TNPYVTQKGVEYIAICDKRD 277
             P  TQ G   + +  + +
Sbjct: 74  QGPVQTQFGYHLLEVTSRSE 93


>gi|152996616|ref|YP_001341451.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas sp.
           MWYL1]
 gi|150837540|gb|ABR71516.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas sp.
           MWYL1]
          Length = 92

 Score = 61.6 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 1/67 (1%)

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKG 266
              +        ++F++       G      + D+ P F + +          P  TQ G
Sbjct: 23  KLDKGADFHKLAKQFSTCPSGKKGGDLGEFRKGDMVPAFDKAVFGGPLYKIQGPVKTQFG 82

Query: 267 VEYIAIC 273
              I + 
Sbjct: 83  FHLIKVL 89


>gi|58698918|ref|ZP_00373781.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58534569|gb|EAL58705.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 578

 Score = 61.6 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/377 (8%), Positives = 84/377 (22%), Gaps = 77/377 (20%)

Query: 8   SLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ- 66
           ++ +F   +T   +  +   V + +  S          +  EVIT  +          Q 
Sbjct: 2   NVKNFFTKVTVVLLACLLIFVGVGNLLSGDDEKEEVARVGKEVITSDEYKSLYQNYGKQI 61

Query: 67  -------KINGELEKIAVQELIVETLKKQ-----------------------------EI 90
                  +   +L+   +  LI + L                                E 
Sbjct: 62  SGSDASREQVKKLKYDLLNALIEQKLLFNLTSELGLTVGEESIKNHIKNTKYFQNDKGEF 121

Query: 91  EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
           +K+      N ++    ++                               + I+    + 
Sbjct: 122 DKNKFHETLNDLHMTEKEYIAKLEKILPAMMFMTSLFKDNYPVTFGEKIDEQIYNSRYQT 181

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD------ 204
             +      E  +    +      +  Y      F  P+ +      ++++  +      
Sbjct: 182 RVVDIVKITEDAVTNIPEPDDQTLLDLYERNKSHFYYPEYRTAQYISLEQKYFEDQIKIS 241

Query: 205 ---------AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--------- 246
                     +E R +                     +        +  +F         
Sbjct: 242 DEEVDGIIEQQELRDQRDIFNIIFSTKEEAETARRAFEEGKTSFEQIVEEFGKAELEETR 301

Query: 247 --------------QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEI--ALKAYLSA 290
                         + +        +    +  G   I +     +  E    LK  + +
Sbjct: 302 VNNITKDFLPEDMREKVFALKVGEVSEVLASSFGWHIIKVESAHQISDEDLVDLKKDIKS 361

Query: 291 QNTPTKIEKHEAEYVKK 307
             T  K  +   +++ +
Sbjct: 362 VLTNQKSFERVNDFINQ 378


>gi|15606786|ref|NP_214166.1| hypothetical protein aq_1695 [Aquifex aeolicus VF5]
 gi|2984018|gb|AAC07562.1| putative protein [Aquifex aeolicus VF5]
          Length = 296

 Score = 61.6 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/309 (12%), Positives = 89/309 (28%), Gaps = 50/309 (16%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDIS-------KRIALLKLQKI 68
           +    ++I+F I  I S        +I   ++G  +T  ++        KRI  L   K 
Sbjct: 1   MKKPILVILFFIGFIFS--------QIVAEVDGYKVTKEELDTLFHVFWKRITHLSSAKP 52

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             E ++I + + + + L  +E +K GI      +N F  ++                   
Sbjct: 53  TQEDKRIFLIDYVADLLILKEAKKMGIEVSEKEINDFIRKYVGRKIKEKS---------- 102

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                    +  + +   +V      +  N   +I     +             +L    
Sbjct: 103 -----VINAVKAEILVEKLVDKLMKEQELNPSEDILRAYYEFYKREFYRPSSVKLLGIY- 156

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
                     +K  +   +   +      +  K +  +         +     L    + 
Sbjct: 157 -------VKSKKEAERISQILKQGEVPSTEDVKVSKPL---------WYSIPTLPKYIRR 200

Query: 249 LLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYV 305
             +  S    + P     G     I DK+  G       K+ +       K ++   +++
Sbjct: 201 NFRTLSVGEVSKPIKINDGYLVFKILDKKPAGFIPFERAKSLVKKMYLKEKRKEVFKKWL 260

Query: 306 KKLRSNAII 314
            ++     +
Sbjct: 261 SEVLKKYQV 269


>gi|295095199|emb|CBK84289.1| Parvulin-like peptidyl-prolyl isomerase [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 93

 Score = 61.6 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +K  +D  E            +K +        G      +  + P F + +      
Sbjct: 13  KEEKLAQDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVL 72

Query: 256 NTTNPYVTQKGVEYIAIC 273
             T P  TQ G   I + 
Sbjct: 73  EPTGPLHTQFGYHIIKVL 90


>gi|289626305|ref|ZP_06459259.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|330867003|gb|EGH01712.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 96

 Score = 61.6 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 10/74 (13%), Positives = 21/74 (28%), Gaps = 1/74 (1%)

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVT 263
             E            +  +S       G         +  +F  ++  +  N    P  T
Sbjct: 23  QIEGGADFADFAEIAKANSSCPSSRQGGDLGSFGPGQMVKEFDTVVFSAPVNTVQGPVKT 82

Query: 264 QKGVEYIAICDKRD 277
           Q G   + +  ++D
Sbjct: 83  QFGYHLLEVTSRQD 96


>gi|114327489|ref|YP_744646.1| peptidyl-prolyl cis-trans isomerase [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315663|gb|ABI61723.1| peptidyl-prolyl cis-trans isomerase [Granulibacter bethesdensis
           CGDNIH1]
          Length = 656

 Score = 61.6 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/388 (8%), Positives = 90/388 (23%), Gaps = 85/388 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVI--------T 52
           M +    SL+ +   L    +++ F         + A       T+NG  I         
Sbjct: 14  MLATFRNSLNAWPVRLLFGLLVLAFVGWGFSDVWTQATGGGALVTVNGSRIEPQAFQATY 73

Query: 53  DGDISKRIALLK--LQKINGELE----KIAVQELIVETLKKQEIEKSGITFDSNTVNYFF 106
             ++++    +    Q +  ++     + A+Q+++ ET+      K G+T     +    
Sbjct: 74  QRELNRVRQQMGGGRQDVPPDIRKMVAQQALQQMVTETVLDDLTRKMGLTTPDADIRQAT 133

Query: 107 VQHAR----NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND----------- 151
                            F + L+  G+ ++ +  YL        ++              
Sbjct: 134 YAMPAFKNDQGQFDQARFQAVLNSVGLTEDSYVAYLRRTITERQLLDAIRAGASAPKILV 193

Query: 152 ----------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                                         + ++                 R     +  
Sbjct: 194 APLFAWQKEQRSGDMIEVPVSAAPAPPQPTDKQLERYWANHPARYTAPEYRRIKAIVLTP 253

Query: 190 NKLQNQGFVQKR------------IKDAEESRLRLPKDCNKLEKFASKIHDVSIGK---- 233
             +     V ++                E+  + +    ++ +  A      +       
Sbjct: 254 ETVAKAIEVPEKDLRAWYDANGIHFDTPEKRDVSIVLVPDEAKAKALAEQWDNGADWKKI 313

Query: 234 -------------AQYLLESDLH-PQFQN--LLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
                           + +  L  P            +    P     G   + +   + 
Sbjct: 314 SALANSDGGSAVELTGITKQQLPVPDLMPLAFETTKTDQIAGPVHDSLGWHVVRVGKIQP 373

Query: 278 LG--GEIALKAYLSAQNTPTKIEKHEAE 303
                   +K  +    +  +  +   +
Sbjct: 374 ATHRSFEEMKEEIKQILSTQRAMEQIYD 401



 Score = 45.1 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 64/263 (24%), Gaps = 19/263 (7%)

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
            E+++   Q L  +   +Q  ++S    ++            +    A        +   
Sbjct: 380 EEMKEEIKQILSTQRAMEQIYDRSSHLDEAFAQGSTLDDKLPDADAVAAISGQLDMQGNT 439

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI--PANKQKMKNITVREYLIRTVLFSI 187
            +           +   ++   F +K G+    +      Q         Y    V   I
Sbjct: 440 REGTPAPIPGSDQLKQALITAAFSMKKGDAPHLVPVTPQSQPGTPAGPTTYFAVQVEDII 499

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
           P           +   D  + +    ++        +     S+  A  L    L     
Sbjct: 500 PGALRPFPEVKAEVTADWIQDKRHHSQEEAATRAMLALQEGKSVADAVTLSGGTLKQIPL 559

Query: 248 NLLKKSQNNTTN---------------PYVTQKGVEYIAICDK--RDLGGEIALKAYLSA 290
              K    + +                   T  G   I +          + A  +    
Sbjct: 560 LTRKGETGDVSADTRRALFALKLNDSTMVNTPDGFAIIRLTRILSPTEKDDPAAFSQARE 619

Query: 291 QNTPTKIEKHEAEYVKKLRSNAI 313
           Q T    E  E  ++  LRS A 
Sbjct: 620 QITQGLAEDLENTFLASLRSKAD 642


>gi|297812121|ref|XP_002873944.1| hypothetical protein ARALYDRAFT_488823 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297319781|gb|EFH50203.1| hypothetical protein ARALYDRAFT_488823 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 296

 Score = 61.6 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 11/87 (12%), Positives = 35/87 (40%)

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN 259
           +   + ++  L   +  +   +++        G   ++    + P+F+    K++ N   
Sbjct: 106 ELFAELQKRILEGEEMSDLAAEYSICPSKKDGGILGWVKLGQMVPEFEEAAFKAEPNQVV 165

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKA 286
              TQ G+  + +  +R+   +I ++ 
Sbjct: 166 RCRTQFGLHLLQVLSEREPVKDIQVEE 192


>gi|90416509|ref|ZP_01224440.1| peptidyl-prolyl cis-trans isomerase C2 [marine gamma
           proteobacterium HTCC2207]
 gi|90331708|gb|EAS46936.1| peptidyl-prolyl cis-trans isomerase C2 [marine gamma
           proteobacterium HTCC2207]
          Length = 93

 Score = 61.6 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 10/79 (12%), Positives = 23/79 (29%), Gaps = 1/79 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           +++  D ++         N   + +S       G         +  +F + +        
Sbjct: 14  EEKCADLKQQIEAGADFANVASEHSSCPSGSRGGDLGQFGPGQMVREFDEVVFSGELGMV 73

Query: 258 TNPYVTQKGVEYIAICDKR 276
             P  TQ G   + I  + 
Sbjct: 74  HGPVQTQFGYHLLEITSRE 92


>gi|291277475|ref|YP_003517247.1| hypothetical protein HMU12700 [Helicobacter mustelae 12198]
 gi|290964669|emb|CBG40524.1| putative periplasmic protein [Helicobacter mustelae 12198]
          Length = 300

 Score = 61.6 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 85/273 (31%), Gaps = 23/273 (8%)

Query: 42  IRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           I  T+NG+ IT   I +     KL       E+ A+  L+ + +K+QEI++  I  D   
Sbjct: 46  IAITVNGDPITLYQIKQTAKEQKL------TEEKAIDFLVAQKIKEQEIKRLKINIDEEK 99

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
           ++      A   G+  + F S + K+        +    + +    +    ++  GN   
Sbjct: 100 IDNEIQNMAYRNGMDTKTFLSAIKKEQHMSEREFKKHLKEQMETQELMRSVLMSNGNSAG 159

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           E        K+          ++        +      K    A     R+ +  +    
Sbjct: 160 EEEMRDYYNKHRGEFNMPKEVLVVRYSAKSSELLEEAIKHPDTAMRGVERVQEKMSLASL 219

Query: 222 FASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
                          +  +    +F  +L    N              I      +    
Sbjct: 220 APQ---------IGQVFATTKINEFTTILNAGNNTFVT--------FLIKEKIGEEQITF 262

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              K +++ +    + +K   ++ +K++  A I
Sbjct: 263 QQAKNFITQKLIEKRQDKILEDHFEKIKQKASI 295


>gi|193213470|ref|YP_001999423.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobaculum parvum
           NCIB 8327]
 gi|193086947|gb|ACF12223.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobaculum parvum
           NCIB 8327]
          Length = 701

 Score = 61.6 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/116 (12%), Positives = 33/116 (28%), Gaps = 4/116 (3%)

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGK 233
                   +L  +      +    Q   +   +             K++    +    G 
Sbjct: 344 EPMASASHILIRVNPADKASVESGQALARKILDELKNGASFAQLAAKYSQDPGNAQRGGF 403

Query: 234 AQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAIC--DKRDLGGEIALKA 286
             +  +  + P+F Q +          P +T+ G+  I I   D R +     ++ 
Sbjct: 404 LGWFTKERMVPEFTQAVFSGKPGQVVGPVLTRFGLHIIKIDGFDNRQIVCSEVVRQ 459



 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 28/98 (28%), Gaps = 5/98 (5%)

Query: 220 EKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL- 278
           +  +  I         Y  +  L      +     N  + P  T  G   + +  ++   
Sbjct: 604 KITSGIISWRDGNIDGYGSDRRLVEAMAGM---ELNKLSAPVQTSNGFALVKLDGRQLPY 660

Query: 279 -GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                  K  +  Q    K E+   EY +  R  A I 
Sbjct: 661 GLDLEVEKKRILPQLMKIKQEQLFNEYFEAARRTAKIE 698



 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 67/246 (27%), Gaps = 24/246 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           +  K+       + +L   FV +I     +               +NGE I   +  +  
Sbjct: 3   LMGKLRDKTHIVLFILVAAFVGLIVFEWGMNFTGPKQSRGGDVGAVNGEPIPAAEYEQLY 62

Query: 61  ALLKLQKINGE------------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF--- 105
            ++                    L + A   ++ +TL  Q ++K  +      V      
Sbjct: 63  NMVSTSFRQRNPGVEVTSRIDAGLREQAWNMVVDQTLINQLLKKYAVQVSDQEVLEAVNS 122

Query: 106 -------FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGN 158
                    Q+  +      D       +           A + +  +++ N  ++   +
Sbjct: 123 EVNPPGIIRQNFTDPKTGQIDRELLEKARQDPQAKEFWLKAQEMVRRELMINKLLMDLKS 182

Query: 159 LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ--GFVQKRIKDAEESRLRLPKDC 216
           + +       ++       +    + F        +      ++     E  + +  ++ 
Sbjct: 183 MAIVTDPEVTELVQRQYTTFSGSFIPFPYDFAGPASNFPVKDEEITAWYEAHKGQFQQEP 242

Query: 217 NKLEKF 222
            +  +F
Sbjct: 243 TRSAEF 248


>gi|219681515|ref|YP_002467900.1| survival protein SurA precursor [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471196|ref|ZP_05635195.1| survival protein SurA precursor [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219624358|gb|ACL30513.1| survival protein SurA precursor [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 430

 Score = 61.6 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 46/157 (29%), Gaps = 3/157 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +  N    K   +            P   L N    +K     E  +  +    + ++  
Sbjct: 271 LKVNDIHHKKENIVTEFYMQHCLIKPSVILTNTEAKKKIFNIYENIKKGIYTFDDAVKNL 330

Query: 223 ASKI-HDVSIGKAQYLLESDLH-PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           +         G   ++ +  L     +  L   +N  + P  +  G     I D+R +  
Sbjct: 331 SDDYYSSNKKGDLGWISKESLGFDLNKKFLILDKNEISEPVKSNWGWHIFKILDRRQVDA 390

Query: 281 E-IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                K          KI   +  +++ L++ A I  
Sbjct: 391 FYKLKKNQAFNIVLNQKIISEKNHWIEDLKNTAYIEI 427



 Score = 59.7 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 88/299 (29%), Gaps = 18/299 (6%)

Query: 33  YKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN-------GELEKIAVQELIVETL 85
                    I   +N E+I + D+++ +  LK  K           L++  +++LIV++L
Sbjct: 19  LAKNNQVDNITAIVNDEIILNSDVNEILVFLKKSKKKFIIPLKSDFLKEKVLEKLIVDSL 78

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNT----GLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
             QE     I      ++      A           +       K     ++F + + I 
Sbjct: 79  ILQEANSKNINITKEQIDTVIKNIALKKHISVNHFKKQILLRNIKNPSYYDNFIKKIEIL 138

Query: 142 SIWPDVVKNDFMLKYGNLEME---IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
                +   +   +    E E   I     K      +  L   +L S   +        
Sbjct: 139 LKMKTIQDYELHKRINISEQEVNTIFKKLIKDNEKFKKINLSYILLPSFKQDSDNAVRNR 198

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNT 257
            K  ++      +       L +         + K  +    D+ +  F+ L    +   
Sbjct: 199 TKIAENIVYKLKKGYDFEKLLIECEKNKSTFIVKKMFWKPLLDIQNSFFKTLNIFKKGQI 258

Query: 258 TNPYVTQKGVEYIAICD---KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             P V  KG+  + + D   K++         +   + +         + +  +  N  
Sbjct: 259 LGPIVGDKGLYILKVNDIHHKKENIVTEFYMQHCLIKPSVILTNTEAKKKIFNIYENIK 317


>gi|303236785|ref|ZP_07323364.1| PPIC-type PPIASE domain protein [Prevotella disiens FB035-09AN]
 gi|302482953|gb|EFL45969.1| PPIC-type PPIASE domain protein [Prevotella disiens FB035-09AN]
          Length = 407

 Score = 61.6 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/164 (10%), Positives = 43/164 (26%), Gaps = 4/164 (2%)

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL-QNQGFVQKRIKDAEESRLR 211
                    +I    +     +        +L S         Q  +  R        ++
Sbjct: 36  DADIEAEAQKIYKETRDRIEGSGGLIRCAHILLSAGQKASVAEQKEIADRADSLYNVIMK 95

Query: 212 LPKDCNKLEKFASKIH-DVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEY 269
                   +K++         G+   +        F+           ++P ++  G   
Sbjct: 96  GGNFAELAKKYSKDPSSAARGGELPLITRGQTVQAFEEALFSMKPGEISHPILSPFGYHI 155

Query: 270 IAICDKRDLGGEIALKAYLSAQNTPT-KIEKHEAEYVKKLRSNA 312
           I    K       +LKA +          E+   + ++K+ + A
Sbjct: 156 IKYVAKEQFQPYDSLKADIHQFIEARNLREQIIDQKLQKMATEA 199


>gi|298370084|ref|ZP_06981400.1| conserved hypothetical protein [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298281544|gb|EFI23033.1| conserved hypothetical protein [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 290

 Score = 61.6 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/298 (10%), Positives = 79/298 (26%), Gaps = 23/298 (7%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVET 84
                +++  S  +S++   T+NG  I    I  ++ +++ Q    +      + L    
Sbjct: 6   IISALVLAALSGTLSAKTLVTVNGTAIDSSTIDDQVKVIRSQNKQVQDSPALRKSLTERQ 65

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
           +    + +       +    F     ++   + +  +            F++        
Sbjct: 66  IIATVVSQEAKRLKLDQSAEFKKAAEQSRTAATKQGADKKPTFKTEWAVFEKD------- 118

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
             ++   F +           + +   N   + Y     +         N+   +     
Sbjct: 119 --LLGQAFAMHIAKQNPVQEKDIKTAYNDFSKFYKGTQEVQLGQIAARSNEDAQKA---- 172

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVSIGKA--QYLLESDL----HPQFQNLLKKSQNNT- 257
             +         N L++++        G     Y+   DL     P +  +    +    
Sbjct: 173 -IKDLEAKKSFANVLKQYSVDEQAKKAGGIARGYVPLKDLEQSAPPLYAAIKDLKKGGFT 231

Query: 258 TNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           + P           I D+RD+         +  +             +  L   A I 
Sbjct: 232 SAPLPNGNVYSVFYINDRRDIKV--PSYEEMKNEIGSELQASRIDAAIGALMQKADIK 287


>gi|303239171|ref|ZP_07325700.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio
           cellulolyticus CD2]
 gi|302593216|gb|EFL62935.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio
           cellulolyticus CD2]
          Length = 353

 Score = 61.6 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/339 (8%), Positives = 90/339 (26%), Gaps = 46/339 (13%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSS-----RIRTTINGEVITDGDISKRIALLKLQK 67
           +K + T+ +            KS  +S+      I  T+  E IT  +      +   QK
Sbjct: 3   LKKVITFALSASLVFSLSACNKSVKLSNGKNSTDIVGTVGDEKITATEFKFYATMEINQK 62

Query: 68  --------------------------INGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
                                         +    +  L    +     +K  +  +   
Sbjct: 63  ESQAGIADKSKDEKKKYWETKEGDVDRKQTVIDNTLNNLTELKVLLMSAKKDNVKLEQTD 122

Query: 102 VNYFFVQHARN-----TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
            +       +       G   E     ++K G+  + +K       +  +   +    K 
Sbjct: 123 FDDANKMIDQFVQNEAKGDKNEAEKVMMEKYGVSIDQYKLMYQDYMLAYNKYASSQPAKI 182

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ-----NQGFVQKRIKDAEESRLR 211
              + ++ +  +K K    +  +   ++ +      +          +K   D  +    
Sbjct: 183 EINDSDVKSEFEKNKEQYNKVTVKHVLVLTNDSTTNEPLPEDKVAEKKKLADDILKKAQA 242

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIA 271
                  +++++        G      + ++  +F++    ++        T  G   + 
Sbjct: 243 GEDFEALVKQYSEDPGSKDKGGEYTFPKGEMVKEFEDWAFNAKEGDMGVVQTTYGFHVMK 302

Query: 272 ICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
              + D   +         +   +       + + +L+ 
Sbjct: 303 FIKREDASFDAE-----KDKLKSSLQNAQYQKKLDELKK 336


>gi|255639033|gb|ACU19817.1| unknown [Glycine max]
          Length = 291

 Score = 61.6 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 10/100 (10%), Positives = 32/100 (32%), Gaps = 1/100 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN 255
              QK +   ++         +   +++        G   ++ +  + P+F+     +  
Sbjct: 95  EDDQKLLLYLQQKISSGEDLSDLAVEYSLCPSKEEGGMLGWVRKGQMVPEFEEAAFTAPL 154

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALK-AYLSAQNTP 294
           N      T+ G   + +  +R+      ++   L  +   
Sbjct: 155 NQVVRCKTKFGWHLLQVLSEREESILQDIQPDELHMKIQD 194


>gi|324007449|gb|EGB76668.1| PPIC-type PPIASE domain protein [Escherichia coli MS 57-2]
          Length = 117

 Score = 61.6 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +K   D  E            +K +        G      +  + P F + +      
Sbjct: 37  KEEKLALDLLEQIKNGADFSKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVL 96

Query: 256 NTTNPYVTQKGVEYIAIC 273
             T P  TQ G   I + 
Sbjct: 97  EPTGPLHTQFGYHIIKVL 114


>gi|294669107|ref|ZP_06734191.1| peptidyl-prolyl cis-trans isomerase D [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308921|gb|EFE50164.1| peptidyl-prolyl cis-trans isomerase D [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 566

 Score = 61.6 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/253 (11%), Positives = 75/253 (29%), Gaps = 3/253 (1%)

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            + I  L+ Q     +  +A    IV + + + I +               ++       
Sbjct: 127 DQLIEKLRHQFELQNVANLAANGNIVSSQQLERIARLMQAEREIRTAVVDPRNFAAGVKV 186

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            +        +        + +  + I  ++       +    E E+     + ++    
Sbjct: 187 DDAALKAYYDKDKSKYLIPKAVKFEYI--ELSAKTLADRQTVSEEEVKKAFAEQQSSAQP 244

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
           +  +  ++F++P    + +   +     AE             +         S G    
Sbjct: 245 KQEVSHIMFALPQGGDKAKIKAEAEKVLAEAKASPDNFAALAQKYSQDAATAQSGGALGV 304

Query: 237 LLESD-LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT 295
           + +S  L  +F+  + K          +  G   + I + +        KA L A+    
Sbjct: 305 VDKSSALPEEFKAAIAKLNKGDIALVESTAGFHIVRITNTQGQQSFDEAKASLEAELKQK 364

Query: 296 KIEKHEAEYVKKL 308
           K ++  A+  + L
Sbjct: 365 KAQQALAQMRQTL 377


>gi|294141729|ref|YP_003557707.1| peptidyl-prolyl cis-trans isomerase C [Shewanella violacea DSS12]
 gi|293328198|dbj|BAJ02929.1| peptidyl-prolyl cis-trans isomerase C [Shewanella violacea DSS12]
          Length = 92

 Score = 61.6 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 9/78 (11%), Positives = 25/78 (32%), Gaps = 1/78 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           +++ +  ++  L      +  +  +S       G         +  +F + +     N  
Sbjct: 14  EEKCEALKQEILGGADFGDVAKANSSCPSSAQGGDLGSFGPGMMVKEFDEVVFNAPLNEV 73

Query: 258 TNPYVTQKGVEYIAICDK 275
             P  TQ G   + +  +
Sbjct: 74  QGPVKTQFGYHLLEVTSR 91


>gi|323332847|gb|EGA74250.1| Ess1p [Saccharomyces cerevisiae AWRI796]
          Length = 190

 Score = 61.6 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/193 (8%), Positives = 46/193 (23%), Gaps = 12/193 (6%)

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           LI    + +    + +  D  +              S +    F  +         +   
Sbjct: 6   LIPTHNRLRHHNDAPMPSDVASSTGLPTPWTVRYSKSKKREYFFNPETKHSQWEEPEGTN 65

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
              +   +   D  ++   L + I                  +          Q+     
Sbjct: 66  KDQLHKHL--KDHPVRVRCLHILIKH---------KGSRRPASHRSENITISKQDATDEL 114

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT 258
           K +    +   +        ++ +        G   +    ++ P F++   +      +
Sbjct: 115 KTLITRLDDDSKTNSFEALAKERSDCSSYKRGGDLGWFGRGEMQPSFEDAAFQLKVGEVS 174

Query: 259 NPYVTQKGVEYIA 271
           +   +  GV  I 
Sbjct: 175 DIVESGSGVHVIK 187


>gi|47092734|ref|ZP_00230520.1| protein export protein [Listeria monocytogenes str. 4b H7858]
 gi|47018922|gb|EAL09669.1| protein export protein [Listeria monocytogenes str. 4b H7858]
          Length = 287

 Score = 61.6 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/305 (8%), Positives = 83/305 (27%), Gaps = 47/305 (15%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           + +     +  +    S              +   +T  ++ + +               
Sbjct: 1   MISVIAATLLLLAGCGSSA--------VVKTDAGSVTQDELYEAMKT--------TYGNE 44

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            VQ+L  + + + +   +    ++                  E +    +     +N  K
Sbjct: 45  VVQQLTFKKILEDKYTVTEKEVNAEY------------KKYEEQYGDSFESTLSSNNLTK 92

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
                   +  +V+          E ++    +        +  +R +L           
Sbjct: 93  TSFKENLEYNLLVQKATEANMNVSESKLKTYYKTW----EPDITVRHIL----------- 137

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLK--K 252
              +   K+ +       K  +  +++++      + G        ++   F+      +
Sbjct: 138 VDDEATAKEIQTKLKNGEKFTDLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYALE 197

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS-AQNTPTKIEKHEAEYVKKLRSN 311
           ++++ +    +  G   I +  K + G     KA +  A        ++    +KK    
Sbjct: 198 NKDDVSGIVKSTYGYHLIQLVKKTEKGTYAKEKANVKAAYIESQLTTENMIAALKKELKA 257

Query: 312 AIIHY 316
           A I  
Sbjct: 258 ANIDI 262


>gi|126443707|ref|YP_001062622.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Burkholderia pseudomallei 668]
 gi|126223198|gb|ABN86703.1| PPIC-type PPIASE domain protein [Burkholderia pseudomallei 668]
          Length = 265

 Score = 61.6 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 46/180 (25%), Gaps = 4/180 (2%)

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
             ++   + +    L     +               R+ +  + +     +        +
Sbjct: 73  DDALDALLARELTPLPEPTRDACERYYLNHAARFRRRDIVYASHILFAVTDATPLAPLRR 132

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKKSQNNT 257
           +                 +  + ++       G    LL  D  P+F             
Sbjct: 133 EAEATLARVLAEPQTFEARARELSNCPSAQVGGSLGQLLRGDSVPEFDAAVFDTTDSGVL 192

Query: 258 TNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                T+ G   + I  +   D     A+ A ++A        K   +YV  L S A I 
Sbjct: 193 PRLVNTRFGFHIVRIERRVPGDPVPFDAVAAEIAAFLAERVHHKAIQQYVTILASGARIE 252


>gi|331006497|ref|ZP_08329797.1| Peptidyl-prolyl cis-trans isomerase ppiC [gamma proteobacterium
           IMCC1989]
 gi|330419697|gb|EGG94063.1| Peptidyl-prolyl cis-trans isomerase ppiC [gamma proteobacterium
           IMCC1989]
          Length = 93

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 10/82 (12%), Positives = 30/82 (36%), Gaps = 1/82 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +++    ++         +  ++ +S       G+     +  + P+F + +  ++ N
Sbjct: 12  DTEEQCNKLKQDIEGGIAFTDIAKQHSSCPSGAQGGELGEFTQGQMVPEFDKVVFNEALN 71

Query: 256 NTTNPYVTQKGVEYIAICDKRD 277
               P  TQ G   + I  + +
Sbjct: 72  TVHGPVKTQFGYHLLEITARSE 93


>gi|225010080|ref|ZP_03700552.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteria
           bacterium MS024-3C]
 gi|225005559|gb|EEG43509.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteria
           bacterium MS024-3C]
          Length = 706

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 10/85 (11%), Positives = 29/85 (34%)

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS 253
            +   ++  +   E++             +        G   +  E  + P+F + +  +
Sbjct: 374 KEEARKEANRLLIEAKKSTTVFAELARDNSDGPTASRGGDLGFFQEGQMTPKFNDFVFSN 433

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDL 278
             +      T+ G   + + DK+D+
Sbjct: 434 SVDAIGLVETEFGFHIVRVDDKQDI 458



 Score = 47.0 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 46/163 (28%), Gaps = 13/163 (7%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
             K+    +  I ++       +   V   S     M      ++NGE I+  D  +++ 
Sbjct: 4   LEKIRQRTTVLILIIGLALFAFVISGVFTNSGSGSPMGGSAIGSVNGEEISIDDFRQKLE 63

Query: 62  -------------LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
                         L  Q  N  L    + + I +     E ++      +        +
Sbjct: 64  VAAQRAGSQATTVQLVNQVWNSSLRTSLLNQEIEDLGISVEGDQIMNFIKNTPSYSNQPE 123

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
                G+ +E            +N ++  L +Q     +    
Sbjct: 124 FQDENGIFSESLFIAAVADWKANNPYRYSLWLQDELAIMQSAK 166


>gi|226506196|ref|NP_001152416.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Zea mays]
 gi|195656053|gb|ACG47494.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Zea mays]
          Length = 151

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 10/103 (9%), Positives = 30/103 (29%), Gaps = 3/103 (2%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
                + VL        +    +Q    +  +      +     ++++        G   
Sbjct: 50  TYVKAKHVLCEKQGKINEAYKKLQDGWLNNGDKVP-PAEFAKVAQEYSECPSGKKGGDLG 108

Query: 236 YLLESDLH-PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
           +     +  P  +      +   + P+ +  G  +I +C+ R 
Sbjct: 109 WFPRGKMAGPFQEVAFNTPEGTVSAPFKSTHGYHFI-LCEVRK 150


>gi|95930624|ref|ZP_01313358.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133276|gb|EAT14941.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 93

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 9/70 (12%), Positives = 18/70 (25%), Gaps = 1/70 (1%)

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQK 265
           +            +KF+        G         +  +F + +          P  TQ 
Sbjct: 23  QIEAGATDFAECAQKFSQCPSGRKGGDLGQFAPGQMVKEFDEVVFSGEVGKVLGPVKTQF 82

Query: 266 GVEYIAICDK 275
           G   I +  +
Sbjct: 83  GYHLIEVTKR 92


>gi|296105332|ref|YP_003615478.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295059791|gb|ADF64529.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 93

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 23/81 (28%), Gaps = 1/81 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +K   D  E            +K +        G      +  + P F + +      
Sbjct: 13  KEEKLALDLLEQLKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVL 72

Query: 256 NTTNPYVTQKGVEYIAICDKR 276
             T P  TQ G   I +  ++
Sbjct: 73  EPTGPLHTQFGYHVIKVLYRK 93


>gi|188993651|ref|YP_001905661.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167735411|emb|CAP53626.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xanthomonas
           campestris pv. campestris]
          Length = 294

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/199 (9%), Positives = 48/199 (24%), Gaps = 12/199 (6%)

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
           D +     Q       +   A  +I    ++            ++ A      +      
Sbjct: 85  DQAHQERLQDDPVVAARIRQATDAILVKAMQTRVRQAAQIDAAQVQAQFDAHPHDYDEVQ 144

Query: 179 LIRTVLFSIPDNK-----LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIG 232
           L    +   P +        ++     R +  ++             + +         G
Sbjct: 145 LSHVFVALHPQSDARGGTELSELQAAARAQQLKQQLDAGTPFAELARRDSDDASTASDGG 204

Query: 233 KAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ 291
           +   +   ++   F   ++       + P     G   I + D R        +  +  Q
Sbjct: 205 QLSSIFLRNVADVFAASVQALGVGQVSAPVRGPDGYHLIRL-DARTPATFDTARGQIEVQ 263

Query: 292 NTPTKIEKHEAEYVKKLRS 310
                        +++LR 
Sbjct: 264 LRAQAETAA----LEQLRQ 278


>gi|323934167|gb|EGB30598.1| ppic-type ppiase domain-containing protein [Escherichia coli E1520]
          Length = 108

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 26/100 (26%), Gaps = 1/100 (1%)

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKA 234
              Y ++   +      L      +K   D  E            +K +        G  
Sbjct: 6   PDNYSLKARSWQKTAAALHILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDL 65

Query: 235 QYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAIC 273
               +  + P F + +        T P  TQ G   I + 
Sbjct: 66  GEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVL 105


>gi|306815185|ref|ZP_07449338.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli NC101]
 gi|305851554|gb|EFM52008.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli NC101]
          Length = 93

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +K   D  E            +K +        G      +  + P F + +      
Sbjct: 13  KEEKLALDLLEQIKNGADFSKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVL 72

Query: 256 NTTNPYVTQKGVEYIAIC 273
             T P  TQ G   I + 
Sbjct: 73  EPTGPLHTQFGYHIIKVL 90


>gi|237750606|ref|ZP_04581086.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
 gi|229373696|gb|EEO24087.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
          Length = 294

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/316 (14%), Positives = 106/316 (33%), Gaps = 42/316 (13%)

Query: 15  LLTTYFVLIIFCIVPI-------------VSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
           ++   F+  + C                 +   S  +   I   +NGE IT   I +   
Sbjct: 1   MIKKIFIFTLLCCSTFIYAESSSQSPASSLDSVSKNIVGGIALFVNGEPITLHAIKQVEN 60

Query: 62  LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
            L            A   L+ E LK+ EI++  I  +   ++    Q A+  G++ + F 
Sbjct: 61  ALHTD------RLRATDILVTEKLKEAEIKRLKIEINDIQLDSQIAQIAQQNGMNLDQFY 114

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
           + + ++G+    ++  L  Q +  ++++          E E+     +  +      + +
Sbjct: 115 AAIMREGMSLVEYRTKLKEQMLAQELMRKILFSSNVGQEDELRKYYNEHLDEF---VIPK 171

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
            V+     ++ +       +          +     KLE  +              L + 
Sbjct: 172 EVVGVKFVSRNKEILESFMQQGIDSTIPDSIAHTEEKLEIES--------------LPTQ 217

Query: 242 LHPQFQNLLKKSQNNTTNPYVTQKG-VEYIAICDK--RDLGGEIALKAYLSAQNTPTKIE 298
           +   F   L  +  + T  + +  G      I  K   +       K Y++ +      E
Sbjct: 218 VADIF---LATNAKSFTQVFESDNGDFVAFYIKGKISNEQVDFEKAKNYIAQKLIANNQE 274

Query: 299 KHEAEYVKKLRSNAII 314
           K  ++Y +++RS + I
Sbjct: 275 KILSDYFERVRSRSKI 290


>gi|219682071|ref|YP_002468455.1| survival protein SurA precursor [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219621804|gb|ACL29960.1| survival protein SurA precursor [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|311085883|gb|ADP65965.1| survival protein SurA precursor [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311087036|gb|ADP67116.1| survival protein SurA precursor [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087600|gb|ADP67679.1| survival protein SurA precursor [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 430

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 46/157 (29%), Gaps = 3/157 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +  N    K   +            P   L N    +K     E  +  +    + ++  
Sbjct: 271 LKVNDIHHKKENIVTEFYMQHCLIKPSVILTNTEAKKKIFNIYENIKKGIYTFDDAVKNL 330

Query: 223 ASKI-HDVSIGKAQYLLESDLH-PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           +         G   ++ +  L     +  L   +N  + P  +  G     I D+R +  
Sbjct: 331 SDDYYSSNKKGDLGWISKESLGFDLNKKFLILDKNEISEPVKSNWGWHIFKILDRRQVDA 390

Query: 281 E-IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                K          KI   +  +++ L++ A I  
Sbjct: 391 FYKLKKNQAFNIVLNQKIISEKNHWIEDLKNTAYIEI 427



 Score = 59.3 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 88/299 (29%), Gaps = 18/299 (6%)

Query: 33  YKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN-------GELEKIAVQELIVETL 85
                    I   +N E+I + D+++ +  LK  K           L++  +++LIV++L
Sbjct: 19  LAKNNQVDNITAIVNDEIILNSDVNEILVFLKKSKKKFIIPLKSDFLKEKVLEKLIVDSL 78

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNT----GLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
             QE     I      ++      A           +       K     ++F + + I 
Sbjct: 79  ILQEANSKNINITKEQIDTVIKNIALKKHISVNHFKKQILLRNIKNPSYYDNFIKKIEIL 138

Query: 142 SIWPDVVKNDFMLKYGNLEME---IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
                +   +   +    E E   I     K      +  L   +L S   +        
Sbjct: 139 LKMKTIQDYELHKRINISEQEVNTIFKKLIKDNEKFKKINLSYILLPSFKQDSDNAVRNR 198

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNT 257
            K  ++      +       L +         + K  +    D+ +  F+ L    +   
Sbjct: 199 IKIAENIVYKLKKGYDFEKLLIECEKNKSTFIVKKMFWKPLLDIQNSFFKTLNIFKKGQI 258

Query: 258 TNPYVTQKGVEYIAICD---KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             P V  KG+  + + D   K++         +   + +         + +  +  N  
Sbjct: 259 LGPIVGDKGLYILKVNDIHHKKENIVTEFYMQHCLIKPSVILTNTEAKKKIFNIYENIK 317


>gi|261749107|ref|YP_003256792.1| putative exported peptidyl-prolyl cis-trans isomerase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
 gi|261497199|gb|ACX83649.1| putative exported peptidyl-prolyl cis-trans isomerase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
          Length = 421

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/305 (11%), Positives = 96/305 (31%), Gaps = 27/305 (8%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSS--RIRTTINGEVITDGDISKRIALLKLQK 67
           + F KL    F +++  I+  + + S+       +   I  E++ D ++   +   K   
Sbjct: 3   NIFFKLKQECFFILLMLIIFCIPFPSFTFEKIGGMTAVIGDEILLDSEVKHYLNSNKKIT 62

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
               LE + + +LI+   KK    +       +    F  +   N   +          +
Sbjct: 63  PCKGLENLIIHKLILYHAKKDPSLQIDNQEIQSKKEEFLKEFNSNFSKNFSLEELTEKIK 122

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
                        +            ++    E++   NK+K K   + + +  + +   
Sbjct: 123 NNQYIEKFYQKMKE-----------DIEISPEEVKYFFNKEKEKLPIIPKKICVSYMILS 171

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF 246
           P    +++  +   +K  ++          K    +         G    + + ++  +F
Sbjct: 172 PKFSKEHREKIVNFLKKIKKEIHSDKDFSMKAILLSEDYSSAFKGGLINGVKKKNISKEF 231

Query: 247 QNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYV 305
           + ++    +   + P+ T  G   + +  KR    +      +       K  +      
Sbjct: 232 ERIVFSLEEKQISEPFETDLGFHLVKLEKKRGEEID------IRHILIQPKYTE------ 279

Query: 306 KKLRS 310
           ++LR 
Sbjct: 280 EELRK 284


>gi|332345756|gb|AEE59090.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli UMNK88]
          Length = 93

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +K   D  E            +K +        G      +  + P F + +      
Sbjct: 13  KEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVL 72

Query: 256 NTTNPYVTQKGVEYIAIC 273
             T P  TQ G   I + 
Sbjct: 73  EPTGPLHTQFGYHIIKVL 90


>gi|301047344|ref|ZP_07194429.1| PPIC-type PPIASE domain protein [Escherichia coli MS 185-1]
 gi|300300761|gb|EFJ57146.1| PPIC-type PPIASE domain protein [Escherichia coli MS 185-1]
          Length = 92

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +K   D  E            +K +        G      +  + P F + +      
Sbjct: 12  KEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVL 71

Query: 256 NTTNPYVTQKGVEYIAIC 273
             T P  TQ G   I + 
Sbjct: 72  EPTGPLHTQFGYHIIKVL 89


>gi|237727901|ref|ZP_04558382.1| peptidyl-prolyl cis-trans isomerase C [Citrobacter sp. 30_2]
 gi|226910350|gb|EEH96268.1| peptidyl-prolyl cis-trans isomerase C [Citrobacter sp. 30_2]
          Length = 93

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +K   D  E            +K +        G      +  + P F + +      
Sbjct: 13  KEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVL 72

Query: 256 NTTNPYVTQKGVEYIAIC 273
             T P  TQ G   I + 
Sbjct: 73  EPTGPLHTQFGYHIIKVL 90


>gi|33357145|pdb|1JNS|A Chain A, Nmr Structure Of The E. Coli Peptidyl-Prolyl CisTRANS-
           Isomerase Parvulin 10
 gi|33357146|pdb|1JNT|A Chain A, Nmr Structure Of The E. Coli Peptidyl-Prolyl CisTRANS-
           Isomerase Parvulin 10
          Length = 92

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +K   D  E            +K +        G      +  + P F + +      
Sbjct: 12  KEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVL 71

Query: 256 NTTNPYVTQKGVEYIAIC 273
             T P  TQ G   I + 
Sbjct: 72  EPTGPLHTQFGYHIIKVL 89


>gi|15804366|ref|NP_290406.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli O157:H7 EDL933]
 gi|15833963|ref|NP_312736.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. Sakai]
 gi|16131633|ref|NP_418223.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli str. K-12 substr. MG1655]
 gi|26250515|ref|NP_756555.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli CFT073]
 gi|74314289|ref|YP_312708.1| peptidyl-prolyl cis-trans isomerase C [Shigella sonnei Ss046]
 gi|82546130|ref|YP_410077.1| peptidyl-prolyl cis-trans isomerase C [Shigella boydii Sb227]
 gi|82779043|ref|YP_405392.1| peptidyl-prolyl cis-trans isomerase C [Shigella dysenteriae Sd197]
 gi|89110241|ref|AP_004021.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli str. K-12
           substr. W3110]
 gi|91213297|ref|YP_543283.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli UTI89]
 gi|110644105|ref|YP_671835.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli 536]
 gi|117626038|ref|YP_859361.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli APEC O1]
 gi|157144407|ref|YP_001451724.1| hypothetical protein CKO_00116 [Citrobacter koseri ATCC BAA-895]
 gi|157159000|ref|YP_001465256.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli E24377A]
 gi|157163250|ref|YP_001460568.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli HS]
 gi|168751733|ref|ZP_02776755.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4113]
 gi|168753669|ref|ZP_02778676.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4401]
 gi|168764147|ref|ZP_02789154.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4501]
 gi|168768053|ref|ZP_02793060.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4486]
 gi|168775677|ref|ZP_02800684.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4196]
 gi|168780671|ref|ZP_02805678.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4076]
 gi|168786610|ref|ZP_02811617.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC869]
 gi|168800992|ref|ZP_02825999.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC508]
 gi|170022196|ref|YP_001727150.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli
           ATCC 8739]
 gi|170083264|ref|YP_001732584.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli str. K-12 substr. DH10B]
 gi|187731031|ref|YP_001882399.1| peptidyl-prolyl cis-trans isomerase C [Shigella boydii CDC 3083-94]
 gi|188492216|ref|ZP_02999486.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli 53638]
 gi|191166088|ref|ZP_03027923.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli B7A]
 gi|191174379|ref|ZP_03035884.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli F11]
 gi|193066141|ref|ZP_03047196.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli E22]
 gi|193071034|ref|ZP_03051961.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli E110019]
 gi|194429785|ref|ZP_03062300.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli B171]
 gi|194434610|ref|ZP_03066866.1| peptidyl-prolyl cis-trans isomerase C [Shigella dysenteriae 1012]
 gi|194438654|ref|ZP_03070742.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli 101-1]
 gi|195938064|ref|ZP_03083446.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli O157:H7 str. EC4024]
 gi|208808398|ref|ZP_03250735.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4206]
 gi|208813213|ref|ZP_03254542.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4045]
 gi|208819051|ref|ZP_03259371.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4042]
 gi|209400598|ref|YP_002273294.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4115]
 gi|215489105|ref|YP_002331536.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli O127:H6 str. E2348/69]
 gi|217325985|ref|ZP_03442069.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. TW14588]
 gi|218550998|ref|YP_002384789.1| peptidyl-prolyl cis-trans isomerase C [Escherichia fergusonii ATCC
           35469]
 gi|218556338|ref|YP_002389252.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli IAI1]
 gi|218560842|ref|YP_002393755.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli S88]
 gi|218697493|ref|YP_002405160.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli 55989]
 gi|218707413|ref|YP_002414932.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli UMN026]
 gi|227888640|ref|ZP_04006445.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli 83972]
 gi|237702786|ref|ZP_04533267.1| peptidyl-prolyl cis-trans isomerase C [Escherichia sp. 3_2_53FAA]
 gi|238902858|ref|YP_002928654.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli BW2952]
 gi|253775598|ref|YP_003038429.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038988|ref|ZP_04873039.1| peptidyl-prolyl cis-trans isomerase C [Escherichia sp. 1_1_43]
 gi|254163720|ref|YP_003046828.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli B str. REL606]
 gi|254795774|ref|YP_003080611.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. TW14359]
 gi|256021482|ref|ZP_05435347.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Shigella sp.
           D9]
 gi|256026123|ref|ZP_05439988.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia sp.
           4_1_40B]
 gi|260846448|ref|YP_003224226.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O103:H2
           str. 12009]
 gi|260857818|ref|YP_003231709.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O26:H11
           str. 11368]
 gi|260870501|ref|YP_003236903.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O111:H-
           str. 11128]
 gi|261225549|ref|ZP_05939830.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261255596|ref|ZP_05948129.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. FRIK966]
 gi|283787544|ref|YP_003367409.1| peptidyl-prolyl cis-trans isomerase C [Citrobacter rodentium
           ICC168]
 gi|291285191|ref|YP_003502009.1| Peptidyl-prolyl cis-trans isomerase C [Escherichia coli O55:H7 str.
           CB9615]
 gi|293407407|ref|ZP_06651327.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli FVEC1412]
 gi|293413220|ref|ZP_06655882.1| peptidyl-prolyl cis-trans isomerase ppiC [Escherichia coli B354]
 gi|293417241|ref|ZP_06659866.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli B185]
 gi|293468094|ref|ZP_06664506.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli B088]
 gi|297519155|ref|ZP_06937541.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli OP50]
 gi|298383147|ref|ZP_06992741.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli FVEC1302]
 gi|300823307|ref|ZP_07103438.1| PPIC-type PPIASE domain protein [Escherichia coli MS 119-7]
 gi|300900680|ref|ZP_07118833.1| PPIC-type PPIASE domain protein [Escherichia coli MS 198-1]
 gi|300904026|ref|ZP_07121908.1| PPIC-type PPIASE domain protein [Escherichia coli MS 84-1]
 gi|300921519|ref|ZP_07137863.1| PPIC-type PPIASE domain protein [Escherichia coli MS 115-1]
 gi|300923275|ref|ZP_07139324.1| PPIC-type PPIASE domain protein [Escherichia coli MS 182-1]
 gi|300930062|ref|ZP_07145492.1| PPIC-type PPIASE domain protein [Escherichia coli MS 187-1]
 gi|300947369|ref|ZP_07161565.1| PPIC-type PPIASE domain protein [Escherichia coli MS 116-1]
 gi|300955223|ref|ZP_07167618.1| PPIC-type PPIASE domain protein [Escherichia coli MS 175-1]
 gi|300979304|ref|ZP_07174488.1| PPIC-type PPIASE domain protein [Escherichia coli MS 200-1]
 gi|301028986|ref|ZP_07192143.1| PPIC-type PPIASE domain protein [Escherichia coli MS 196-1]
 gi|301303670|ref|ZP_07209791.1| PPIC-type PPIASE domain protein [Escherichia coli MS 124-1]
 gi|301325465|ref|ZP_07218948.1| PPIC-type PPIASE domain protein [Escherichia coli MS 78-1]
 gi|301646160|ref|ZP_07246059.1| PPIC-type PPIASE domain protein [Escherichia coli MS 146-1]
 gi|307140476|ref|ZP_07499832.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli H736]
 gi|307313647|ref|ZP_07593267.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli W]
 gi|309784487|ref|ZP_07679125.1| peptidyl-prolyl cis-trans isomerase C [Shigella dysenteriae 1617]
 gi|309796284|ref|ZP_07690694.1| PPIC-type PPIASE domain protein [Escherichia coli MS 145-7]
 gi|312969494|ref|ZP_07783696.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli 2362-75]
 gi|312971941|ref|ZP_07786115.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli 1827-70]
 gi|331644509|ref|ZP_08345629.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli H736]
 gi|331649601|ref|ZP_08350683.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli M605]
 gi|331655460|ref|ZP_08356453.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli M718]
 gi|331660119|ref|ZP_08361055.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli TA206]
 gi|331670621|ref|ZP_08371458.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli TA271]
 gi|331679885|ref|ZP_08380548.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli H591]
 gi|331685496|ref|ZP_08386080.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli H299]
 gi|332282716|ref|ZP_08395129.1| peptidyl-prolyl cis-trans isomerase C [Shigella sp. D9]
 gi|71159799|sp|P0A9L7|PPIC_ECO57 RecName: Full=Peptidyl-prolyl cis-trans isomerase C; Short=PPIase
           C; AltName: Full=Parvulin; AltName: Full=Rotamase C
 gi|71159800|sp|P0A9L6|PPIC_ECOL6 RecName: Full=Peptidyl-prolyl cis-trans isomerase C; Short=PPIase
           C; AltName: Full=Parvulin; AltName: Full=Rotamase C
 gi|71159801|sp|P0A9L5|PPIC_ECOLI RecName: Full=Peptidyl-prolyl cis-trans isomerase C; Short=PPIase
           C; AltName: Full=Par10; AltName: Full=Parvulin; AltName:
           Full=Rotamase C
 gi|12518636|gb|AAG58970.1|AE005609_2 peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli O157:H7 str. EDL933]
 gi|26110945|gb|AAN83129.1|AE016769_244 Peptidyl-prolyl cis-trans isomerase C [Escherichia coli CFT073]
 gi|693800|gb|AAB32054.1| parvulin [Escherichia coli]
 gi|836657|gb|AAA67578.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli str. K-12
           substr. MG1655]
 gi|1790211|gb|AAC76780.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli str. K-12 substr. MG1655]
 gi|13364184|dbj|BAB38132.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. Sakai]
 gi|73857766|gb|AAZ90473.1| peptidyl-prolyl cis-trans isomerase C [Shigella sonnei Ss046]
 gi|81243191|gb|ABB63901.1| peptidyl-prolyl cis-trans isomerase C [Shigella dysenteriae Sd197]
 gi|81247541|gb|ABB68249.1| peptidyl-prolyl cis-trans isomerase C [Shigella boydii Sb227]
 gi|85676272|dbj|BAE77522.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli str. K12
           substr. W3110]
 gi|91074871|gb|ABE09752.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli UTI89]
 gi|110345697|gb|ABG71934.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli 536]
 gi|115515162|gb|ABJ03237.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli APEC O1]
 gi|157068930|gb|ABV08185.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli HS]
 gi|157081030|gb|ABV20738.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli E24377A]
 gi|157081612|gb|ABV11290.1| hypothetical protein CKO_00116 [Citrobacter koseri ATCC BAA-895]
 gi|169757124|gb|ACA79823.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli
           ATCC 8739]
 gi|169891099|gb|ACB04806.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli str. K-12 substr. DH10B]
 gi|187428023|gb|ACD07297.1| peptidyl-prolyl cis-trans isomerase C [Shigella boydii CDC 3083-94]
 gi|187768876|gb|EDU32720.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4196]
 gi|188014263|gb|EDU52385.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4113]
 gi|188487415|gb|EDU62518.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli 53638]
 gi|189001576|gb|EDU70562.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4076]
 gi|189359243|gb|EDU77662.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4401]
 gi|189362581|gb|EDU81000.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4486]
 gi|189365788|gb|EDU84204.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4501]
 gi|189373218|gb|EDU91634.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC869]
 gi|189376805|gb|EDU95221.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC508]
 gi|190903864|gb|EDV63578.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli B7A]
 gi|190905356|gb|EDV64990.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli F11]
 gi|192926238|gb|EDV80877.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli E22]
 gi|192955621|gb|EDV86097.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli E110019]
 gi|194412197|gb|EDX28504.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli B171]
 gi|194417129|gb|EDX33242.1| peptidyl-prolyl cis-trans isomerase C [Shigella dysenteriae 1012]
 gi|194422458|gb|EDX38457.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli 101-1]
 gi|208728199|gb|EDZ77800.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4206]
 gi|208734490|gb|EDZ83177.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4045]
 gi|208739174|gb|EDZ86856.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4042]
 gi|209161998|gb|ACI39431.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. EC4115]
 gi|209753548|gb|ACI75081.1| hypothetical protein ECs4709 [Escherichia coli]
 gi|209753550|gb|ACI75082.1| hypothetical protein ECs4709 [Escherichia coli]
 gi|209753552|gb|ACI75083.1| hypothetical protein ECs4709 [Escherichia coli]
 gi|209753554|gb|ACI75084.1| hypothetical protein ECs4709 [Escherichia coli]
 gi|209753556|gb|ACI75085.1| hypothetical protein ECs4709 [Escherichia coli]
 gi|215267177|emb|CAS11625.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli O127:H6 str. E2348/69]
 gi|217322206|gb|EEC30630.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. TW14588]
 gi|218354225|emb|CAV00876.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli 55989]
 gi|218358539|emb|CAQ91187.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           fergusonii ATCC 35469]
 gi|218363107|emb|CAR00747.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli IAI1]
 gi|218367611|emb|CAR05395.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli S88]
 gi|218434510|emb|CAR15437.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli UMN026]
 gi|222035479|emb|CAP78224.1| Peptidyl-prolyl cis-trans isomerase C [Escherichia coli LF82]
 gi|226838679|gb|EEH70707.1| peptidyl-prolyl cis-trans isomerase C [Escherichia sp. 1_1_43]
 gi|226902957|gb|EEH89216.1| peptidyl-prolyl cis-trans isomerase C [Escherichia sp. 3_2_53FAA]
 gi|227834479|gb|EEJ44945.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli 83972]
 gi|238861994|gb|ACR63992.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli BW2952]
 gi|242379308|emb|CAQ34119.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli BL21(DE3)]
 gi|253326642|gb|ACT31244.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975621|gb|ACT41292.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli B str. REL606]
 gi|253979777|gb|ACT45447.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli BL21(DE3)]
 gi|254595174|gb|ACT74535.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli O157:H7 str. TW14359]
 gi|257756467|dbj|BAI27969.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O26:H11
           str. 11368]
 gi|257761595|dbj|BAI33092.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O103:H2
           str. 12009]
 gi|257766857|dbj|BAI38352.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O111:H-
           str. 11128]
 gi|260451379|gb|ACX41801.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli
           DH1]
 gi|281180826|dbj|BAI57156.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli SE15]
 gi|282950998|emb|CBG90675.1| peptidyl-prolyl cis-trans isomerase C [Citrobacter rodentium
           ICC168]
 gi|290765064|gb|ADD59025.1| Peptidyl-prolyl cis-trans isomerase C [Escherichia coli O55:H7 str.
           CB9615]
 gi|291321472|gb|EFE60910.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli B088]
 gi|291425518|gb|EFE98556.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli FVEC1412]
 gi|291431009|gb|EFF04004.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli B185]
 gi|291468168|gb|EFF10665.1| peptidyl-prolyl cis-trans isomerase ppiC [Escherichia coli B354]
 gi|294491161|gb|ADE89917.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli IHE3034]
 gi|298276383|gb|EFI17902.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli FVEC1302]
 gi|299878029|gb|EFI86240.1| PPIC-type PPIASE domain protein [Escherichia coli MS 196-1]
 gi|300308057|gb|EFJ62577.1| PPIC-type PPIASE domain protein [Escherichia coli MS 200-1]
 gi|300317877|gb|EFJ67661.1| PPIC-type PPIASE domain protein [Escherichia coli MS 175-1]
 gi|300355829|gb|EFJ71699.1| PPIC-type PPIASE domain protein [Escherichia coli MS 198-1]
 gi|300403978|gb|EFJ87516.1| PPIC-type PPIASE domain protein [Escherichia coli MS 84-1]
 gi|300411587|gb|EFJ94897.1| PPIC-type PPIASE domain protein [Escherichia coli MS 115-1]
 gi|300420420|gb|EFK03731.1| PPIC-type PPIASE domain protein [Escherichia coli MS 182-1]
 gi|300453031|gb|EFK16651.1| PPIC-type PPIASE domain protein [Escherichia coli MS 116-1]
 gi|300462050|gb|EFK25543.1| PPIC-type PPIASE domain protein [Escherichia coli MS 187-1]
 gi|300524093|gb|EFK45162.1| PPIC-type PPIASE domain protein [Escherichia coli MS 119-7]
 gi|300840970|gb|EFK68730.1| PPIC-type PPIASE domain protein [Escherichia coli MS 124-1]
 gi|300847692|gb|EFK75452.1| PPIC-type PPIASE domain protein [Escherichia coli MS 78-1]
 gi|301075629|gb|EFK90435.1| PPIC-type PPIASE domain protein [Escherichia coli MS 146-1]
 gi|306906628|gb|EFN37140.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli W]
 gi|307555905|gb|ADN48680.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli ABU 83972]
 gi|307628840|gb|ADN73144.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli UM146]
 gi|308120166|gb|EFO57428.1| PPIC-type PPIASE domain protein [Escherichia coli MS 145-7]
 gi|308927593|gb|EFP73062.1| peptidyl-prolyl cis-trans isomerase C [Shigella dysenteriae 1617]
 gi|309704215|emb|CBJ03562.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli ETEC
           H10407]
 gi|310334318|gb|EFQ00523.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli 1827-70]
 gi|312286041|gb|EFR13959.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli 2362-75]
 gi|312948332|gb|ADR29159.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315063073|gb|ADT77400.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli W]
 gi|315138353|dbj|BAJ45512.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli DH1]
 gi|315254139|gb|EFU34107.1| PPIC-type PPIASE domain protein [Escherichia coli MS 85-1]
 gi|315284674|gb|EFU44119.1| PPIC-type PPIASE domain protein [Escherichia coli MS 110-3]
 gi|315293140|gb|EFU52492.1| PPIC-type PPIASE domain protein [Escherichia coli MS 153-1]
 gi|315300850|gb|EFU60072.1| PPIC-type PPIASE domain protein [Escherichia coli MS 16-3]
 gi|315618524|gb|EFU99110.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli 3431]
 gi|320176018|gb|EFW51087.1| Peptidyl-prolyl cis-trans isomerase ppiC [Shigella dysenteriae CDC
           74-1112]
 gi|320185436|gb|EFW60205.1| Peptidyl-prolyl cis-trans isomerase ppiC [Shigella flexneri CDC
           796-83]
 gi|320191130|gb|EFW65780.1| Peptidyl-prolyl cis-trans isomerase ppiC [Escherichia coli O157:H7
           str. EC1212]
 gi|320197589|gb|EFW72201.1| Peptidyl-prolyl cis-trans isomerase ppiC [Escherichia coli
           WV_060327]
 gi|320198516|gb|EFW73117.1| Peptidyl-prolyl cis-trans isomerase ppiC [Escherichia coli EC4100B]
 gi|320639260|gb|EFX08882.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. G5101]
 gi|320644645|gb|EFX13695.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H-
           str. 493-89]
 gi|320649970|gb|EFX18473.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H-
           str. H 2687]
 gi|320655316|gb|EFX23258.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320660941|gb|EFX28384.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320666065|gb|EFX33079.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli O157:H7
           str. LSU-61]
 gi|323155178|gb|EFZ41362.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli EPECa14]
 gi|323161160|gb|EFZ47078.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli E128010]
 gi|323167629|gb|EFZ53334.1| peptidyl-prolyl cis-trans isomerase C [Shigella sonnei 53G]
 gi|323173393|gb|EFZ59022.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli LT-68]
 gi|323177786|gb|EFZ63370.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli 1180]
 gi|323182549|gb|EFZ67953.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli 1357]
 gi|323189501|gb|EFZ74781.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli RN587/1]
 gi|323380865|gb|ADX53133.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli
           KO11]
 gi|323938916|gb|EGB35135.1| ppic-type ppiase domain-containing protein [Escherichia coli E482]
 gi|323943821|gb|EGB39916.1| ppic-type ppiase domain-containing protein [Escherichia coli H120]
 gi|323949338|gb|EGB45228.1| ppic-type ppiase domain-containing protein [Escherichia coli H252]
 gi|323954091|gb|EGB49888.1| ppic-type ppiase domain-containing protein [Escherichia coli H263]
 gi|323959034|gb|EGB54703.1| ppic-type ppiase domain-containing protein [Escherichia coli H489]
 gi|323969281|gb|EGB64581.1| ppic-type ppiase domain-containing protein [Escherichia coli TA007]
 gi|323974360|gb|EGB69488.1| ppic-type ppiase domain-containing protein [Escherichia coli
           TW10509]
 gi|324014721|gb|EGB83940.1| PPIC-type PPIASE domain protein [Escherichia coli MS 60-1]
 gi|324016175|gb|EGB85394.1| PPIC-type PPIASE domain protein [Escherichia coli MS 117-3]
 gi|324111004|gb|EGC04991.1| ppic-type ppiase domain-containing protein [Escherichia fergusonii
           B253]
 gi|324115760|gb|EGC09695.1| ppic-type ppiase domain-containing protein [Escherichia coli E1167]
 gi|325499251|gb|EGC97110.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           fergusonii ECD227]
 gi|326344234|gb|EGD67994.1| Peptidyl-prolyl cis-trans isomerase ppiC [Escherichia coli O157:H7
           str. 1125]
 gi|326347939|gb|EGD71653.1| Peptidyl-prolyl cis-trans isomerase ppiC [Escherichia coli O157:H7
           str. 1044]
 gi|330908079|gb|EGH36598.1| peptidyl-prolyl cis-trans isomerase ppiC [Escherichia coli AA86]
 gi|331036181|gb|EGI08416.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli H736]
 gi|331041471|gb|EGI13619.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli M605]
 gi|331046781|gb|EGI18865.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli M718]
 gi|331052687|gb|EGI24722.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli TA206]
 gi|331062094|gb|EGI34016.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli TA271]
 gi|331072432|gb|EGI43764.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli H591]
 gi|331077197|gb|EGI48411.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli H299]
 gi|332084709|gb|EGI89897.1| peptidyl-prolyl cis-trans isomerase C [Shigella boydii 5216-82]
 gi|332084933|gb|EGI90115.1| peptidyl-prolyl cis-trans isomerase C [Shigella dysenteriae 155-74]
 gi|332089057|gb|EGI94168.1| peptidyl-prolyl cis-trans isomerase C [Shigella boydii 3594-74]
 gi|332105068|gb|EGJ08414.1| peptidyl-prolyl cis-trans isomerase C [Shigella sp. D9]
          Length = 93

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +K   D  E            +K +        G      +  + P F + +      
Sbjct: 13  KEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVL 72

Query: 256 NTTNPYVTQKGVEYIAIC 273
             T P  TQ G   I + 
Sbjct: 73  EPTGPLHTQFGYHIIKVL 90


>gi|116334085|ref|YP_795612.1| peptidylprolyl isomerase [Lactobacillus brevis ATCC 367]
 gi|122269231|sp|Q03QE1|PRSA_LACBA RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|116099432|gb|ABJ64581.1| Parvulin-like peptidyl-prolyl isomerase [Lactobacillus brevis ATCC
           367]
          Length = 305

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 80/289 (27%), Gaps = 34/289 (11%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +  +F+ +   ++ +         S+   T NG  IT+                    K 
Sbjct: 1   MKKWFIALAGLLLTV---TLAGCGSQTVATTNGGKITES-------AYYSSLKGTSSGKQ 50

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +Q++I+  + +   ++ G     + V   F ++    G S                  +
Sbjct: 51  VLQQMILNKVLE---KQYGDKVSKSAVTKQFDKYKSQYGSSFSSVL-------SQSGMTQ 100

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             L  +     ++K          + ++    +  +           V  +      ++ 
Sbjct: 101 SSLKTEIRSNLLLKEAVKDNVTVTDAQLKKQFKSYEPE---------VSVAHILVSKKST 151

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESD---LHPQFQNLLK 251
                +   + +S     +     +K+++        GK      +D        +   K
Sbjct: 152 AQTIIKDLKSTKSSDMTSEFTKLAKKYSTDTATKNKGGKLSSFDSTDTSLDSTFKKAAFK 211

Query: 252 KSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
                 T  P  TQ G   I +      G     KA L+ Q     +  
Sbjct: 212 LKTGEYTATPVKTQYGYHVILMLKNPGKGTIKEHKAELTKQIIDNDMND 260


>gi|311086454|gb|ADP66535.1| survival protein SurA precursor [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 399

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 46/157 (29%), Gaps = 3/157 (1%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +  N    K   +            P   L N    +K     E  +  +    + ++  
Sbjct: 240 LKVNDIHHKKENIVTEFYMQHCLIKPSVILTNTEAKKKIFNIYENIKKGIYTFDDAVKNL 299

Query: 223 ASKI-HDVSIGKAQYLLESDLH-PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           +         G   ++ +  L     +  L   +N  + P  +  G     I D+R +  
Sbjct: 300 SDDYYSSNKKGDLGWISKESLGFDLNKKFLILDKNEISEPVKSNWGWHIFKILDRRQVDA 359

Query: 281 E-IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                K          KI   +  +++ L++ A I  
Sbjct: 360 FYKLKKNQAFNIVLNQKIISEKNHWIEDLKNTAYIEI 396



 Score = 51.6 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 86/285 (30%), Gaps = 18/285 (6%)

Query: 47  NGEVITDGDISKRIALLKLQKIN-------GELEKIAVQELIVETLKKQEIEKSGITFDS 99
           N E+I + D+++ +  LK  K           L++  +++LIV++L  QE     I    
Sbjct: 2   NDEIILNSDVNEILVFLKKSKKKFIIPLKSDFLKEKVLEKLIVDSLILQEANSKNINITK 61

Query: 100 NTVNYFFVQHARNT----GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
             ++      A           +       K     ++F + + I      +   +   +
Sbjct: 62  EQIDTVIKNIALKKHISVNHFKKQILLRNIKNPSYYDNFIKKIEILLKMKTIQDYELHKR 121

Query: 156 YGNLEME---IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
               E E   I     K      +  L   +L S   +         K  ++      + 
Sbjct: 122 INISEQEVNTIFKKLIKDNEKFKKINLSYILLPSFKQDSDNAVRNRIKIAENIVYKLKKG 181

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYIA 271
                 L +         + K  +    D+ +  F+ L    +     P V  KG+  + 
Sbjct: 182 YDFEKLLIECEKNKSTFIVKKMFWKPLLDIQNSFFKTLNIFKKGQILGPIVGDKGLYILK 241

Query: 272 ICD---KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           + D   K++         +   + +         + +  +  N  
Sbjct: 242 VNDIHHKKENIVTEFYMQHCLIKPSVILTNTEAKKKIFNIYENIK 286


>gi|89892051|gb|ABD78868.1| peptidyl-prolyl cis-trans isomerase [Trypanosoma cruzi]
 gi|322821330|gb|EFZ27686.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, putative
           [Trypanosoma cruzi]
          Length = 124

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 3/78 (3%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTT 258
           R  +A +         +   +++      S G   +    ++   FQ           T 
Sbjct: 48  RAMEALKKINEGSSFADVAREYSED-KARSGGDLGWKRRGEMVGPFQEAAFALPKGGMTL 106

Query: 259 NPYVTQKGVEYIAICDKR 276
            P  T  G   I + DK+
Sbjct: 107 EPVKTSFGYHIILVEDKQ 124


>gi|242237656|ref|YP_002985837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya dadantii
           Ech703]
 gi|242129713|gb|ACS84015.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya dadantii
           Ech703]
          Length = 93

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +++  D      +        +K ++     + G      + D+ P F + +      
Sbjct: 13  DTEQQAHDLLAQLEQGADFQQLAQKHSTCPSRRNGGDLGEFRKGDMVPAFDKAVFSCELL 72

Query: 256 NTTNPYVTQKGVEYIAIC 273
               P  TQ G   I + 
Sbjct: 73  KPFGPVKTQFGYHLIKVL 90


>gi|104782209|ref|YP_608707.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas entomophila L48]
 gi|95111196|emb|CAK15916.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase)
           [Pseudomonas entomophila L48]
          Length = 93

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 8/80 (10%), Positives = 24/80 (30%), Gaps = 1/80 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           + +  + +             +  ++       G         +  +F  ++  +  N  
Sbjct: 14  EDQCNELKAQIEAGADFAEIAKANSTCPSSRQGGDLGSFGPGQMVREFDTVVFSAPLNVV 73

Query: 259 -NPYVTQKGVEYIAICDKRD 277
             P  TQ G   + +  ++D
Sbjct: 74  QGPVKTQFGYHLLEVTSRQD 93


>gi|71891915|ref|YP_277645.1| peptidyl-prolyl cis-trans isomerase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|122070620|sp|Q493R5|SURA_BLOPB RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
           cis-trans isomerase surA; Short=PPIase surA; AltName:
           Full=Rotamase surA; Flags: Precursor
 gi|71796021|gb|AAZ40772.1| peptidyl-prolyl cis-trans isomerase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 425

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 100/270 (37%), Gaps = 13/270 (4%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE------ 73
             ++IF +   +   +     +I   +N  +I D DI   I +++   +NG         
Sbjct: 6   IFILIFTLKTNIVLGALKTVDKIVALVNHNIILDSDIRHNIYMIQDNILNGNDNILQDIS 65

Query: 74  --KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
             +  + +LI++ L  Q  ++  I  D   +N           ++ + F ++L   G+  
Sbjct: 66  HYQKILDQLIIDNLIFQISDQQKINIDHTQLNQMINCILNLYDMTFDKFRAYLYDIGLNY 125

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI-PANKQKMKNITVREYLIRTVLFSIPDN 190
             F        +   +  +    +   L  EI    K+       +++ +R + FS+P  
Sbjct: 126 EKFYFQQYQHMLKKQICDHVMHDRAHILTNEINKIVKKSNIIDINKQFKLRHITFSLPIQ 185

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS---IGKAQYLLESDLHPQF- 246
              +Q    +        +     +  +L +  S  + +    + + +++   D+   F 
Sbjct: 186 PTPSQIDRIEYFARLLIKKKEFNNNIKELIRTYSNKNIIQIIKVHETEWVSWKDIPIIFD 245

Query: 247 QNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
           + L   ++ +   P ++  G+  + I D R
Sbjct: 246 KYLQTINKGDVIGPIISCDGIHIVEIQDIR 275



 Score = 45.1 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/279 (11%), Positives = 75/279 (26%), Gaps = 20/279 (7%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   +I+K +    +  IN + +      L   T                      ++  
Sbjct: 152 ILTNEINKIVKKSNIIDINKQFK------LRHITFSLPIQPTPSQIDRIEYFARLLIKKK 205

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM--------- 161
                  E   ++ +K  I      +   +      ++ + ++      ++         
Sbjct: 206 EFNNNIKELIRTYSNKNIIQIIKVHETEWVSWKDIPIIFDKYLQTINKGDVIGPIISCDG 265

Query: 162 ----EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
               EI   + K   + V +   +          +     + +  ++ E+S         
Sbjct: 266 IHIVEIQDIRYKQIMLPVTKVTAKIFGIQNSCENISIVEQLLQIKENMEKSNTAFNMMIK 325

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
           +  K     +          L+       + L     N  + P  T  G   I + D   
Sbjct: 326 EKSKD-ICFNHYEENTICKDLDDFEPSIRKALSSLKSNEISIPVHTSCGWRLIQLIDISI 384

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           L     +           K ++    ++++LRS + I  
Sbjct: 385 LEYNEIMYERAYLYLLNNKFDEIMKNWIQELRSESYIKI 423


>gi|118579009|ref|YP_900259.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter
           propionicus DSM 2379]
 gi|118501719|gb|ABK98201.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter
           propionicus DSM 2379]
          Length = 243

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 10/80 (12%), Positives = 21/80 (26%), Gaps = 1/80 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQN 255
             +      +          +   + +S       G         + P+F + +     N
Sbjct: 11  DTEDLCLKLKTEIEAGADFADVARRESSCPSRQQGGDLGTFNPGQMVPEFDHAVFTGEVN 70

Query: 256 NTTNPYVTQKGVEYIAICDK 275
               P  TQ G   I +  +
Sbjct: 71  KLLGPVQTQFGYHLIEVTRR 90


>gi|229056773|ref|ZP_04196175.1| Foldase protein prsA 1 [Bacillus cereus AH603]
 gi|228720567|gb|EEL72131.1| Foldase protein prsA 1 [Bacillus cereus AH603]
          Length = 244

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 58/221 (26%), Gaps = 11/221 (4%)

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
             V    V           D      K                    + +          
Sbjct: 7   KQVLNNMVMEKVLIKNYKVDDKEVDKKFDEMKKQVGDQFDTLMKQQGLKEETVKNGVRAS 66

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
             +  A ++ + +  +++     V  S    K +      K      E   +        
Sbjct: 67  LAQEQAIEKTITDKELKDNYKPQVKASHILVKDEATAKKVK------EELGQGKSFEELA 120

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD 277
           ++++         G   +     +  +F++   K  ++  + P  TQ G   I + D ++
Sbjct: 121 KQYSEDTASKEKGGDLGFFEHGKMVKEFEDAAYKLKKDEVSEPVKTQFGYHIIKVTDIKE 180

Query: 278 L-GGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRSNAIIH 315
                   KA L  +    K +  +   + + K    A + 
Sbjct: 181 PEKSFEQSKADLKKELVAKKAQDGEFMNDLMMKEIKKADVK 221


>gi|152955223|emb|CAM59672.1| parvulin-type peptidyl-prolyl cis/trans isomerase [Lotus japonicus]
          Length = 145

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 9/103 (8%), Positives = 32/103 (31%), Gaps = 2/103 (1%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
                R +L        +    + +    +   ++   +     ++++        G   
Sbjct: 44  TYVKARHILCEKQGKINEAYKKL-QDGWLSNGDKVPPAEFAKIAQEYSECPSGKKGGDLG 102

Query: 236 YLLESDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAICDKRD 277
           +     +   FQ++   +    T+ P+ +  G   I    +++
Sbjct: 103 WFPRGKMAGPFQDVAFNTVVGATSAPFKSTHGYHIILSEGRKN 145


>gi|58697113|ref|ZP_00372552.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|225630407|ref|YP_002727198.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia sp. wRi]
 gi|58536595|gb|EAL59930.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|225592388|gb|ACN95407.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia sp. wRi]
          Length = 599

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/377 (8%), Positives = 84/377 (22%), Gaps = 77/377 (20%)

Query: 8   SLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ- 66
           ++ +F   +T   +  +   V + +  S          +  EVIT  +          Q 
Sbjct: 2   NVKNFFTKVTVVLLACLLIFVGVGNLLSGDDEKEEVARVGKEVITSDEYKSLYQNYGKQI 61

Query: 67  -------KINGELEKIAVQELIVETLKKQ-----------------------------EI 90
                  +   +L+   +  LI + L                                E 
Sbjct: 62  SGSDASREQVKKLKYDLLNALIEQKLLFNLTSELGLTVGEESIKNHIKNTKYFQNDKGEF 121

Query: 91  EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
           +K+      N ++    ++                               + I+    + 
Sbjct: 122 DKNKFHETLNDLHMTEKEYIAKLEKILPAMMFMTSLFKDNYPVTFGEKIDEQIYNSRYQT 181

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD------ 204
             +      E  +    +      +  Y      F  P+ +      ++++  +      
Sbjct: 182 RVVDIVKITEDAVTNIPEPDDQTLLDLYERNKSHFYYPEYRTAQYISLEQKYFEDQIKIS 241

Query: 205 ---------AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--------- 246
                     +E R +                     +        +  +F         
Sbjct: 242 DEEVDGIIEQQELRDQRDIFNIIFSTKEEAETARRAFEEGKTSFEQIVEEFGKAELEETR 301

Query: 247 --------------QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEI--ALKAYLSA 290
                         + +        +    +  G   I +     +  E    LK  + +
Sbjct: 302 VNNITKDFLPEDMREKVFALKVGEVSEVLASSFGWHIIKVESAHQISDEDLVDLKKDIKS 361

Query: 291 QNTPTKIEKHEAEYVKK 307
             T  K  +   +++ +
Sbjct: 362 VLTNQKSFERVNDFINQ 378


>gi|157374718|ref|YP_001473318.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sediminis
           HAW-EB3]
 gi|157317092|gb|ABV36190.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sediminis
           HAW-EB3]
          Length = 92

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 9/79 (11%), Positives = 25/79 (31%), Gaps = 1/79 (1%)

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNN 256
            + + ++ ++  L      +  +  +S       G         +  +F + +     N 
Sbjct: 13  TEVQCEELKQQILAGADFGDVAKANSSCPSGAQGGDLGSFGPGMMVKEFDEVVFSAPLNE 72

Query: 257 TTNPYVTQKGVEYIAICDK 275
              P  TQ G   + +  +
Sbjct: 73  VQGPVKTQFGYHLLEVTSR 91


>gi|115479119|ref|NP_001063153.1| Os09g0411700 [Oryza sativa Japonica Group]
 gi|50252332|dbj|BAD28365.1| putative peptidyl-prolyl cis-trans isomerase NIMA-interacting 4
           [Oryza sativa Japonica Group]
 gi|113631386|dbj|BAF25067.1| Os09g0411700 [Oryza sativa Japonica Group]
 gi|215764953|dbj|BAG86650.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215768084|dbj|BAH00313.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 148

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 12/103 (11%), Positives = 32/103 (31%), Gaps = 2/103 (1%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
                R VL        +    +Q    D  +      +     ++++        G   
Sbjct: 47  TYVKARHVLCEKQGKINEAYKKLQDGWLDNGDKVP-PAEFAKIAQEYSECPSGKKGGDLG 105

Query: 236 YLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRD 277
           +     +   FQ++   +    T+ P+ +  G  +I    +++
Sbjct: 106 WFPRGKMAGPFQDVAFSTPVGATSAPFKSTHGYHFILCEGRKN 148


>gi|219871319|ref|YP_002475694.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus parasuis SH0165]
 gi|219691523|gb|ACL32746.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus parasuis SH0165]
          Length = 624

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/282 (7%), Positives = 71/282 (25%), Gaps = 21/282 (7%)

Query: 53  DGDISKRIALLKLQKINGELEKIAV---------------QELIVETLKKQEIEKSGITF 97
             +I    A  +  K N  L + A+               + ++   +++  +  S    
Sbjct: 117 KSEIVNSPAFQQDGKFNNNLYQQALRNNGLTADGYAAIVYEGMLFAQIQEAIVNSSFTVP 176

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
               +    +   R   L+    +  ++ Q       + Y           +   +    
Sbjct: 177 AQQELLAKLLLQKRQVRLATYSIAKEVNNQTASAEEMQAYYEANKANFVNPEKLTVEYIS 236

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV--QKRIKDAEESRLRLPKD 215
               ++    Q         Y      ++           V  +    +  ++  +    
Sbjct: 237 IEPKDLANKIQVTNEQIDTYYQTNKAKYTTKGEAKIAHIQVATEAEANEIVQALAKGEDF 296

Query: 216 CNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAIC 273
               +  +   +     G   +         F++         T+ P         I + 
Sbjct: 297 AQLAKAKSQDKLSAAQGGDLGWAKAGVFPKAFEDAANMLDAGKTSQPIKVDNAFHIIKVL 356

Query: 274 DK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           ++    +     +KA ++       +    +   +++ + A 
Sbjct: 357 ERNVETVVPLEKVKAQITDTIRNELLLTEYSNITREMANVAF 398



 Score = 46.2 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 66/238 (27%), Gaps = 20/238 (8%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+      ++      F L+    V          +      +NGE I+    S+  
Sbjct: 1   MIEKMHEKSGGWV--FKIIFALVSLSFVLGGIGGGLIATDNSVAKVNGEEISQQVFSRAK 58

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              +                      +  +  +  L+ + L +Q  +   I   ++ +  
Sbjct: 59  NQQQNILNAQLGERFWDLMDNPIYVKQFHESILNGLVDDELLRQYAKSLKIDVSADQIKS 118

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
             V           + + +             Y A   ++  ++         N    +P
Sbjct: 119 EIVNSPAFQQDGKFNNNLYQQALRNNGLTADGYAA--IVYEGMLFAQIQEAIVNSSFTVP 176

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           A ++ +  + +++  +R   +SI           ++     E ++           ++
Sbjct: 177 AQQELLAKLLLQKRQVRLATYSIAKEVNNQTASAEEMQAYYEANKANFVNPEKLTVEY 234


>gi|218692055|ref|YP_002400267.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli ED1a]
 gi|218429619|emb|CAR10580.2| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli ED1a]
          Length = 93

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +K   D  E            +K +        G      +  + P F + +      
Sbjct: 13  KEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVL 72

Query: 256 NTTNPYVTQKGVEYIAIC 273
             T P  TQ G   I + 
Sbjct: 73  EPTGPLHTQFGYHIIKVL 90


>gi|15611671|ref|NP_223322.1| hypothetical protein jhp0604 [Helicobacter pylori J99]
 gi|4155156|gb|AAD06185.1| putative [Helicobacter pylori J99]
          Length = 413

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 91/291 (31%), Gaps = 37/291 (12%)

Query: 32  SYKSWAMSSRIR----TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKK 87
           +  +  +  ++       +NG  IT   I +       Q+ +   +  A   LI E +K 
Sbjct: 147 NATNNTLEDKVVGGISLLVNGSPITLYQIQEE------QEKSKVSKAQARDRLIAERIKN 200

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           QEIE+  I  D + ++      A+  G+  + F   L  +G     ++  L       ++
Sbjct: 201 QEIERLKIHVDDDKLDQEMAMMAQQQGMDLDHFKQMLMAEGHYKL-YRDQLKEHLEMQEL 259

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           ++N  +                              +         NQ  +++ + D   
Sbjct: 260 LRNILLTNVDTSSETKMREYYNKHKEQFSIPTEIETVRY----TSTNQEDLERAMADPNL 315

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKG- 266
               + K   K                  +    L+PQ   +    +  +  P +   G 
Sbjct: 316 EVPGVSKANEK------------------IEMKTLNPQIAQVFISHEQGSFTPVMNGGGG 357

Query: 267 -VEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                 I +KR          K +++ +      +K   E+ +KLR  + I
Sbjct: 358 QFITFYIKEKRGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEKLRVKSRI 408


>gi|71413418|ref|XP_808848.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Trypanosoma
           cruzi strain CL Brener]
 gi|70873138|gb|EAN86997.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, putative
           [Trypanosoma cruzi]
          Length = 124

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 3/82 (3%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK--KSQ 254
             Q R  +A +         +   +++      S G   +    ++   FQ         
Sbjct: 44  EKQGRAMEALKKINEGSSFADIAREYSED-KARSGGDLGWKRRGEMVGPFQEAAFALPKG 102

Query: 255 NNTTNPYVTQKGVEYIAICDKR 276
             T  P  T  G   I + DK+
Sbjct: 103 GMTPEPVRTSFGYHIILVEDKQ 124


>gi|126662093|ref|ZP_01733092.1| possible peptidyl-prolyl cis-trans isomerase [Flavobacteria
           bacterium BAL38]
 gi|126625472|gb|EAZ96161.1| possible peptidyl-prolyl cis-trans isomerase [Flavobacteria
           bacterium BAL38]
          Length = 653

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/274 (10%), Positives = 70/274 (25%), Gaps = 10/274 (3%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           +N   +T+  + +    +       E+    +  L+ E    Q+  K+            
Sbjct: 102 VNDSKVTNELVKEAYDRM-----QQEVRASHILVLVDEGALPQDTLKAYNKVIEIKRRLD 156

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
             +          +  S  +  G         +               +           
Sbjct: 157 AGEDFITVAQQTSEDPSVKENNGDLGYFSAFRMVYPFENAAYNTKVGQVSKPFRTRFGYH 216

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
             + +     R  +    +  +  N        +  I D  +   +     +  ++F+  
Sbjct: 217 IVKVLDKRVNRGEVTVAHIMIVKQNDAAQNEKAKTTIDDIYKKIQQGEAFESLAQQFSED 276

Query: 226 -IHDVSIGKAQYLLESDLHPQFQNLLKKS---QNNTTNPYVTQKGVEYIAICDKRDLGGE 281
                  G  Q      L  +    +      ++  + P+ +Q G   + + +K  +   
Sbjct: 277 KSSAPKGGVLQRFGSGQLSSEEFENVAFELKEKDQISVPFQSQFGWHIVKLIEKHPVRSF 336

Query: 282 IALKAYLSAQNT-PTKIEKHEAEYVKKLRSNAII 314
             +K  L  +     +         KKLR    I
Sbjct: 337 DEMKFELEEKIRKDERSLLITNSLAKKLRDKYTI 370



 Score = 59.3 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/176 (8%), Positives = 46/176 (26%), Gaps = 2/176 (1%)

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
            Q+               + ++     K+    +         ++        Q+     
Sbjct: 86  YQNELKSYRNQLSKNYVNDSKVTNELVKEAYDRMQQEVRASHILVLVDEGALPQDTLKAY 145

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYLLESDLHPQFQNL-LKKSQNNT 257
            ++ + +             ++ +       + G   Y     +   F+N          
Sbjct: 146 NKVIEIKRRLDAGEDFITVAQQTSEDPSVKENNGDLGYFSAFRMVYPFENAAYNTKVGQV 205

Query: 258 TNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           + P+ T+ G   + + DKR   GE+ +   +  +       +     +  +     
Sbjct: 206 SKPFRTRFGYHIVKVLDKRVNRGEVTVAHIMIVKQNDAAQNEKAKTTIDDIYKKIQ 261


>gi|50123136|ref|YP_052303.1| peptidyl-prolyl cis-trans isomerase C [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613662|emb|CAG77113.1| peptidyl-prolyl cis-trans isomerase C [Pectobacterium atrosepticum
           SCRI1043]
          Length = 93

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             ++   D      +        +K ++     + G      + D+ P F + +      
Sbjct: 13  DTEQLANDILAQLEKGADFQKLAQKHSTCPSKRNGGDLGEFRKGDMVPAFDKAVFSCELL 72

Query: 256 NTTNPYVTQKGVEYIAIC 273
               P  TQ G   I + 
Sbjct: 73  KPFGPVKTQFGYHVIKVL 90


>gi|47218949|emb|CAF98147.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1206

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/106 (10%), Positives = 29/106 (27%), Gaps = 1/106 (0%)

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
             +    +       R   +   +     +  ++      E+ +    K  +   +F+  
Sbjct: 47  KVRCSHLLVKHNQSRRPSSWRQQNITRTKEEALELIQGYIEDIKSGKEKFESLASQFSDC 106

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
               + G         +   F++        + + P  T  GV  I
Sbjct: 107 SSAKNGGDLGLFGRGQMQKPFEDASFALKVGDMSGPVFTDSGVHVI 152


>gi|322514009|ref|ZP_08067083.1| peptidyl-prolyl cis-trans isomerase [Actinobacillus ureae ATCC
           25976]
 gi|322120159|gb|EFX92120.1| peptidyl-prolyl cis-trans isomerase [Actinobacillus ureae ATCC
           25976]
          Length = 625

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/284 (5%), Positives = 62/284 (21%), Gaps = 32/284 (11%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKS 93
            +   +      +N E +    I + I             +  + +L+++  + +     
Sbjct: 143 NNGLSADGYAAIVN-EAMLFSQIQEGIVGSHFSVPAE---QELLAKLLLQKRQVRLAN-- 196

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
                           A                     N F +   +   +  +   +  
Sbjct: 197 -------------YSVAAEAQNQTASGEELQAYYDAHKNAFVEPEKLAIEYVTLTPENVA 243

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                 + +I    +K K   V +         + +                 +      
Sbjct: 244 KNVQVTDEQIATYYEKNKADYVTQGETHIAHIQVANEADAKALE---------QQLAGGA 294

Query: 214 KDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                 +  ++  +     G   +         F++          +           I 
Sbjct: 295 DFSALAKAKSTDKLSAAQGGDLGWAKVGTFPKAFEDAANGLQVGAVSQAVNVDGAYHIIK 354

Query: 272 ICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           +  ++         +K  ++       +    +   +++ + A 
Sbjct: 355 VLARKNEQAIPLEQVKDNIAKTIRNELLLTEYSNLAREMANKAF 398



 Score = 46.2 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/182 (8%), Positives = 48/182 (26%), Gaps = 21/182 (11%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+    +  +      F L+    V        A        +NG  I     +   
Sbjct: 1   MIEKMHERTNGPV--FKIIFALVSLSFVITGIGTGLAGVDTSAAKVNGTAIEQQAFNAAK 58

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           +  +                      +  +  +  LI + L +Q  +   +   +  +  
Sbjct: 59  SRQQNILNTQMGERFWDLLDTPEYAAQFNQSILNGLIDDELLRQYAQNLKLGISAEQIKS 118

Query: 105 FFVQ---HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
             V      ++   + + +   L   G+  + +   +    ++  + +      +     
Sbjct: 119 EIVHSPTFQQDGKFNNQLYQQALRNNGLSADGYAAIVNEAMLFSQIQEGIVGSHFSVPAE 178

Query: 162 EI 163
           + 
Sbjct: 179 QE 180


>gi|165976428|ref|YP_001652021.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165876529|gb|ABY69577.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 625

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/252 (6%), Positives = 54/252 (21%), Gaps = 15/252 (5%)

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH--ARNTGLSAEDFSSFLD 125
             G L     + +I       E E                 +  A+     A        
Sbjct: 156 NEGMLFSQIQEGVIGSDFNVPEQEALLAKLLLQKRQVRLANYSIAKEATNQAASAEELQK 215

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
                 +   +   +   +  +   D        + ++    +K K     +   R    
Sbjct: 216 YYDAHKSELIEPEKLTVEYVTLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHI 275

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHP 244
            + +                 E            +  ++  +     G   +        
Sbjct: 276 QLANETDAKAVA---------EQVKNGADFAELAKTKSTDKLSAAQGGDLGWAKAGTFPK 326

Query: 245 QFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHE 301
            F+           +           I + +++   +     +K  ++       +    
Sbjct: 327 AFEAAAASLQDGQVSAVVNVDGAYHIIKVLERKAETVIPLEQVKDQITKTIRQELLLTEY 386

Query: 302 AEYVKKLRSNAI 313
           +   +++ + A 
Sbjct: 387 SNIAREMANRAF 398



 Score = 42.7 bits (98), Expect = 0.070,   Method: Composition-based stats.
 Identities = 21/230 (9%), Positives = 55/230 (23%), Gaps = 21/230 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +      F L+    V                 +NG  IT    +   
Sbjct: 1   MIENMHERTKGPV--FKIIFALVSLSFVITGIGTGLVGGGTAAVKVNGTEITQQAFNAAK 58

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              +                      +  +  +  L+ E L +Q  ++  +   +  +  
Sbjct: 59  NRQQSVLNAQMGERFWDLLDTPEYAKQFNQSVLNGLVDEELLRQYAKELKLGISAEQIKS 118

Query: 105 FF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
                    ++   S + +   L   G+  + +   +    ++  + +      +   E 
Sbjct: 119 EIVNSPVFQQDGKFSNDLYQQTLRSNGLSADGYAAIVNEGMLFSQIQEGVIGSDFNVPEQ 178

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
           E    K  ++   VR         +        +         +E     
Sbjct: 179 EALLAKLLLQKRQVRLANYSIAKEATNQAASAEELQKYYDAHKSELIEPE 228


>gi|227114356|ref|ZP_03828012.1| peptidyl-prolyl cis-trans isomerase C [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 93

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             ++   D      +        +K ++     + G      + D+ P F + +      
Sbjct: 13  DTEQEANDILAQLEKGADFQKLAQKHSTCPSKRNGGDLGEFRKGDMVPAFDKAVFSCELL 72

Query: 256 NTTNPYVTQKGVEYIAIC 273
               P  TQ G   I + 
Sbjct: 73  KPFGPVKTQFGYHVIKVL 90


>gi|78187764|ref|YP_375807.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Chlorobium luteolum
           DSM 273]
 gi|78167666|gb|ABB24764.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Chlorobium luteolum
           DSM 273]
          Length = 701

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/103 (10%), Positives = 30/103 (29%), Gaps = 2/103 (1%)

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIG 232
           +        +L                + +D            +   ++++ I    S G
Sbjct: 342 SQPVARASHILIGFNPANRAEAQQAGAKAQDILRQLKGGASFADLARRYSADIGSARSGG 401

Query: 233 KAQYLLESDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAICD 274
           +  +     + P+F + +  +       P  T+ G+  I +  
Sbjct: 402 QLGWFRSERMVPEFADAVFSAAPGTVVGPVATRFGLHIIKVEG 444



 Score = 50.4 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 34/122 (27%), Gaps = 4/122 (3%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN 255
             +Q  +     +  ++         F +     S G           P  + +      
Sbjct: 578 KKLQALVSVPGATLQKIAAADKNFSLFTADDIRWSDGFIPGYGVDR--PLVEAMAGMPVQ 635

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIAL--KAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             + P     G     +  K    G      KA ++ +    K E+  +EY   +R  A 
Sbjct: 636 KLSLPVRGNDGFAVFMVQKKTLPEGLDPALEKAAVAPRLLQMKQEQLFSEYFASIRKQAK 695

Query: 314 IH 315
           I 
Sbjct: 696 IE 697


>gi|228472535|ref|ZP_04057295.1| PpiC-type secreted peptidyl-prolyl cis-trans isomerase
           [Capnocytophaga gingivalis ATCC 33624]
 gi|228275948|gb|EEK14704.1| PpiC-type secreted peptidyl-prolyl cis-trans isomerase
           [Capnocytophaga gingivalis ATCC 33624]
          Length = 707

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/259 (10%), Positives = 65/259 (25%), Gaps = 20/259 (7%)

Query: 50  VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
            ++D +I   +   K Q    E+        + ET  + +I++   +  +          
Sbjct: 211 KVSDAEIDAYVKAHKKQFEQKEMRN-IQFVWVTETASEADIKQVEQSLQALNAPRVVYNS 269

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI----------WPDVVKNDFMLKYGNL 159
            R    +   F +   K      +    +   S+            + + N  +      
Sbjct: 270 QRQANDTLPGFGALAAKDVPQFVNENSDVPFDSLYVSKDRLPADHAEALYNLPVGDLYGP 329

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDN--------KLQNQGFVQKRIKDAEESRLR 211
             E    +            +R     I             +++   + + +D       
Sbjct: 330 YKEANTYRYTRMLSKKPNAQMRASHILIAYKGSLPGNETITRSKEEAKAKAEDILAKVKA 389

Query: 212 LPKDCNKLEKFASKIH-DVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYI 270
                      +       + G   +     + P F + +   +        T  G   I
Sbjct: 390 GEDYAALAMVNSDDSSNAPNGGDLDFFSPGMMVPTFNDYVFHGKVGDIGLVETNFGFHII 449

Query: 271 AICDKRDLGGEIALKAYLS 289
            I D+R+      +   + 
Sbjct: 450 KITDQREGVQLATIVRNIE 468



 Score = 43.9 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 22/77 (28%), Gaps = 1/77 (1%)

Query: 239 ESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE 298
           +              Q   + P     GV  I +  K D+   +   +   A     K+ 
Sbjct: 625 QGSEPSVLGAAFALPQGKVSQPIAGDNGVYVIQVTQK-DIAPALPNYSSYMAPLRNQKLN 683

Query: 299 KHEAEYVKKLRSNAIIH 315
           +   +    L + A I 
Sbjct: 684 RASQDLFSALEATADIK 700


>gi|242049250|ref|XP_002462369.1| hypothetical protein SORBIDRAFT_02g024520 [Sorghum bicolor]
 gi|241925746|gb|EER98890.1| hypothetical protein SORBIDRAFT_02g024520 [Sorghum bicolor]
          Length = 152

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 10/103 (9%), Positives = 28/103 (27%), Gaps = 2/103 (1%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
                R VL        +    +Q    D  +      +     ++++        G   
Sbjct: 51  TYVKARHVLCEKQGKINEAYKKLQDGWLDNGDKVP-PAEFAKVAQEYSECPSGKKGGDLG 109

Query: 236 YLLESDLH-PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
           +     +  P  +          + P+ +  G  +I    +++
Sbjct: 110 WFPRGKMAGPFQEVAFNTPVGACSAPFKSTHGYHFILCEGRKN 152


>gi|285016918|ref|YP_003374629.1| ppic-type peptidyl-prolyl cis-trans isomerase; protein [Xanthomonas
           albilineans GPE PC73]
 gi|283472136|emb|CBA14643.1| hypothetical ppic-type peptidyl-prolyl cis-trans isomerase; protein
           [Xanthomonas albilineans]
          Length = 290

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/306 (9%), Positives = 72/306 (23%), Gaps = 36/306 (11%)

Query: 9   LSDFIKL--LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ 66
           +S F     +     L  F  + + +    A    +   +  +  T  +           
Sbjct: 1   MSLFFAKSAVLAVCALTAFVALAMPADVGTAAVDPVVLRVGAQQFTASEYHA-------- 52

Query: 67  KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
                        L  E  +                    +  AR   L  +   +   +
Sbjct: 53  -------------LAGEGTRGVASIDDPSVVRRFADRAILLDQARQQHLQDDPVVAARLR 99

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
           +           A       + ++    ++     +      +        ++       
Sbjct: 100 RAADAILADAARARLGATAQIDESMLHQQFAAYPDDYTEYHLRHL------FVALHPQGG 153

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQ 245
               +   +    +R +  +                +         G+        L   
Sbjct: 154 PRGGQSLTEAQALQRAEALKRQLDGGADFATLAMHESDDGATAAEGGQLSPTFGRYLADA 213

Query: 246 F-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
           F   + + + N  + P     G   I +  K D     A++  +  Q      E+  A+ 
Sbjct: 214 FVAPIHQLAVNQVSAPVRGPDGYHLIYLDAKTDAR-FEAVRGQIELQLR----EQAAADA 268

Query: 305 VKKLRS 310
           +++LR 
Sbjct: 269 MQRLRQ 274


>gi|320101858|ref|YP_004177449.1| hypothetical protein Isop_0305 [Isosphaera pallida ATCC 43644]
 gi|319749140|gb|ADV60900.1| hypothetical protein Isop_0305 [Isosphaera pallida ATCC 43644]
          Length = 449

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 73/293 (24%), Gaps = 19/293 (6%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKS 93
                 S     ING+VIT   +S      +            ++ LI   L  Q I+  
Sbjct: 69  AIPVNPSDPVAVINGQVITRQMLSDECVARRGV--------EILETLIARVLIDQAIQAQ 120

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
           G++  +  +N      A+         +             +QY          ++    
Sbjct: 121 GLSVTAEEINAEIDSVAQRM-AGLSREAWLKTLYKERGISPEQYARDIIYPTLALRKLAE 179

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRT----VLFSIPDNKLQNQGFVQKRIKDAEESR 209
                   ++           +R  +I      V   I      N G  +K   +     
Sbjct: 180 PLVQITPKDLQIAFDATYGDKLRCRMIMVDKLRVAQEIWQELKANPGGFEKIAMERSMDL 239

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLE-SDLHPQFQNLLKKSQNNTTNPYV-TQKGV 267
                     E  +      ++  A +               K    + T P   ++   
Sbjct: 240 NTRSLGGLIAEPISRHAAPETVSAAAFAQLVDGNPNDKDPSHKPKDGDITGPIQVSETSW 299

Query: 268 EYIAICDKRDLGGEIALKAYLSAQN----TPTKIEKHEAEYVKKLRSNAIIHY 316
             +          +      ++AQ       TKI++   E    L   A I  
Sbjct: 300 IILKREAVIPAQAKDPNDPAIAAQLEELVRDTKIKEKMGEVFNALMKRAQIEN 352


>gi|255636250|gb|ACU18465.1| unknown [Glycine max]
          Length = 292

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/100 (11%), Positives = 33/100 (33%), Gaps = 1/100 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN 255
              QK + D ++         +   +++        G   ++ +  + P+F+     +  
Sbjct: 96  EDDQKLLLDIQQRISSGEDLSDLAVEYSLCPSKEEGGMLGWVRKGQMVPEFEEAAFTAPL 155

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALK-AYLSAQNTP 294
           N      T+ G   + +  +R+      ++   L  +   
Sbjct: 156 NKVVSCKTKFGWHLLQVLSEREESILQDIQPDELHVKIQD 195


>gi|261823433|ref|YP_003261539.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pectobacterium
           wasabiae WPP163]
 gi|261607446|gb|ACX89932.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pectobacterium
           wasabiae WPP163]
          Length = 93

 Score = 61.2 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             ++   D      +        +K ++     + G      + D+ P F + +      
Sbjct: 13  DTEQLASDILAQLEKGADFQKLAQKHSTCPSKRNGGDLGEFRKGDMVPAFDKAVFSCELL 72

Query: 256 NTTNPYVTQKGVEYIAIC 273
               P  TQ G   I + 
Sbjct: 73  KPFGPVKTQFGYHVIKVL 90


>gi|297851036|ref|XP_002893399.1| peptidyl-prolyl cis-trans isomerase PPIC-type family protein
           [Arabidopsis lyrata subsp. lyrata]
 gi|297339241|gb|EFH69658.1| peptidyl-prolyl cis-trans isomerase PPIC-type family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 142

 Score = 60.8 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 10/103 (9%), Positives = 31/103 (30%), Gaps = 2/103 (1%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
                R VL        +    + +    +   ++   +      +++        G   
Sbjct: 41  TYVKARHVLCEKQGKINEAYKKL-QDGWLSNGDKVPPAEFAKIAAEYSECPSGKKGGDLG 99

Query: 236 YLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRD 277
           +     +   FQ++   +    T+ P+ +  G   I    +++
Sbjct: 100 WFPRGKMAGPFQDVAFNTPVGVTSAPFKSTHGYHIILSEGRKN 142


>gi|18395946|ref|NP_564250.1| peptidyl-prolyl cis-trans isomerase PPIC-type family protein
           [Arabidopsis thaliana]
 gi|9797744|gb|AAF98562.1|AC013427_5 Contains similarity to peptidyl-prolyl cis-trans isomerase EPVH
           from Homo sapiens gb|AF143096 and contains a Rotamase
           (PPIC-type PPIASE) PF|00639 domain. ESTs gb|T45176,
           gb|F14479, gb|AA586142, gb|F14459, gb|AI997648 come from
           this gene [Arabidopsis thaliana]
 gi|12083236|gb|AAG48777.1|AF332414_1 unknown protein [Arabidopsis thaliana]
 gi|21553425|gb|AAM62518.1| unknown [Arabidopsis thaliana]
 gi|332192582|gb|AEE30703.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Arabidopsis
           thaliana]
          Length = 142

 Score = 60.8 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 10/103 (9%), Positives = 31/103 (30%), Gaps = 2/103 (1%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
                R VL        +    + +    +   ++   +      +++        G   
Sbjct: 41  TYVKARHVLCEKQGKINEAYKKL-QDGWLSNGDKVPPAEFAKIAAEYSECPSGKKGGDLG 99

Query: 236 YLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRD 277
           +     +   FQ++   +    T+ P+ +  G   I    +++
Sbjct: 100 WFPRGKMAGPFQDVAFNTPVGVTSAPFKSTHGYHIILSEGRKN 142


>gi|157375095|ref|YP_001473695.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type [Shewanella
           sediminis HAW-EB3]
 gi|157317469|gb|ABV36567.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type [Shewanella
           sediminis HAW-EB3]
          Length = 270

 Score = 60.8 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/175 (9%), Positives = 44/175 (25%), Gaps = 5/175 (2%)

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
             +++   +      +             T    +    +               K   +
Sbjct: 82  QKLLETQVIYDDPKEDDCQRYFDNNRAKFTTMPLMEVDHILLAAAKDDIKGRDDAKTDAN 141

Query: 205 AEESRLRLPK--DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPY 261
              SRL+       +  +  ++     + G    +      P+F+   +   +   + P 
Sbjct: 142 DIISRLQDDPSLFADLAKHHSACPSKETGGSLGQISNGQTVPEFERQLMLLPEGLASKPL 201

Query: 262 VTQKGVEYIAICDKRDLGG--EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            ++ G+  + I  K +        +   +               Y+  L   A I
Sbjct: 202 ESRYGLHVVNIARKIEGKPLEYSMVYDKVRGYLVHRASHLAIQAYIHNLVQKADI 256


>gi|21244891|ref|NP_644473.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21110602|gb|AAM39009.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 320

 Score = 60.8 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/191 (10%), Positives = 48/191 (25%), Gaps = 12/191 (6%)

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
           Q       +   A  +I    V+            +I A      +     +L    +  
Sbjct: 119 QDDPVVAARIRQATDAILAKAVQTRARESAQIDAAQIKAQFDAHPHDYDEVHLSHVFVAL 178

Query: 187 IPDNKLQ-----NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKA-QYLLE 239
            P  + +            R +  ++             + +         G+     L 
Sbjct: 179 KPQGEARRGTPLTDAQALARAQRLKQQLESGTPFAELAMRQSDDASTAAEGGELSPMFLR 238

Query: 240 SDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
           +        +   +    + P    +G   I +  +R    + A       Q      ++
Sbjct: 239 NVADAFVAPVQDLAVGQVSVPVRGPEGYHLIRVDARRPATLDSA-----RGQIEVQLRDQ 293

Query: 300 HEAEYVKKLRS 310
             A  +++LR 
Sbjct: 294 AAANALEQLRQ 304


>gi|227325836|ref|ZP_03829860.1| peptidyl-prolyl cis-trans isomerase C [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 93

 Score = 60.8 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             ++   D      +        +K ++     + G      + D+ P F + +      
Sbjct: 13  DTEQEANDILAQLEKGADFQKLAQKHSTCPSKRNGGDLGEFRKGDMVPAFDKAVFSCELL 72

Query: 256 NTTNPYVTQKGVEYIAIC 273
               P  TQ G   I + 
Sbjct: 73  KPFGPVKTQFGYHVIKVL 90


>gi|209921249|ref|YP_002295333.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli SE11]
 gi|209914508|dbj|BAG79582.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli SE11]
          Length = 93

 Score = 60.8 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +K   D  E            +K +        G      +  + P F + +      
Sbjct: 13  KEEKLALDLLEQIKNGANFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVL 72

Query: 256 NTTNPYVTQKGVEYIAIC 273
             T P  TQ G   I + 
Sbjct: 73  EPTGPLHTQFGYHIIKVL 90


>gi|222055935|ref|YP_002538297.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
           FRC-32]
 gi|221565224|gb|ACM21196.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
           FRC-32]
          Length = 92

 Score = 60.8 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 22/80 (27%), Gaps = 1/80 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQN 255
             ++     +             +  ++    +  G      +  + P+F  ++     N
Sbjct: 12  DTEEECLKLKTEIENGADFAETAKLNSACPSRMRGGDLGTFAQGQMVPEFDQVVFSGDLN 71

Query: 256 NTTNPYVTQKGVEYIAICDK 275
               P  T  G   I I  +
Sbjct: 72  KVLGPVKTDFGYHLIEITKR 91


>gi|332293063|ref|YP_004431672.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332171149|gb|AEE20404.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 647

 Score = 60.8 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/289 (11%), Positives = 78/289 (26%), Gaps = 44/289 (15%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK--RIALLKLQKINGELEKIAVQEL 80
           +   ++ +  +        I  TIN EVI   + ++        +++      +  ++  
Sbjct: 4   LFLLLIFLCGFSFAHAQKDILLTINNEVIDSEEFTRVYEKNSELIKEDESNAPEDYLKLF 63

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I   LK QE  + G+    +  +      A+       D                     
Sbjct: 64  IDYKLKVQEAYRLGLNNKKSYQDELSAYRAQLAKNYLNDVK------------------- 104

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
             +  ++VK  +      L                       ++   PD    +     +
Sbjct: 105 --VTEELVKEAYDRTVNELNA------------------RHILVRVSPDASPSDTLVAYR 144

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDV-SIGKAQYLLESDLHPQFQNL-LKKSQNNTT 258
            I  A E  +            +       + G   +     +   F+N     + N  +
Sbjct: 145 NITQARERIINGENFEKVARAISEDPSAKKNGGNLGWFKAFKMVYPFENAAYNTAINEVS 204

Query: 259 NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
            P+ T  G   +     R   G++ + A++              E + +
Sbjct: 205 KPFRTSFGYHIVQPIAARKSKGKVQV-AHIMVALNQNDSTIIPEERINE 252



 Score = 60.8 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 75/272 (27%), Gaps = 16/272 (5%)

Query: 59  RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
               L   K+  EL K A    + E   +  + +       +     +    +       
Sbjct: 96  AKNYLNDVKVTEELVKEAYDRTVNELNARHILVRVSPDASPSDTLVAYRNITQARERIIN 155

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
             +     + I ++   +       W    K  +  +       I    +  +       
Sbjct: 156 GENFEKVARAISEDPSAKKNGGNLGWFKAFKMVYPFENAAYNTAINEVSKPFRTSFGYHI 215

Query: 179 LI-----------RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-I 226
           +            +     +  N+  +    ++RI +  +   +          ++    
Sbjct: 216 VQPIAARKSKGKVQVAHIMVALNQNDSTIIPEERINEVSKLLSQGASFETVALNYSDDRA 275

Query: 227 HDVSIGKAQYLLESDLHP---QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIA 283
                GK +   +  L     +      ++    + P+ T+ G   I +  K  +   + 
Sbjct: 276 SYKKGGKLEEFEQGQLSSAAFEKTAFSLENIGAISQPFKTEFGWHIIKLLSKTPVPTYLD 335

Query: 284 LKAYLSAQNTPTKIEKHEAEYVK-KLRSNAII 314
            +  L+ + T     +  +  +  KLR+   +
Sbjct: 336 ARVALTNKVTRDARAQVISNKLDSKLRNRYNV 367


>gi|253690377|ref|YP_003019567.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756955|gb|ACT15031.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 93

 Score = 60.8 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +++  D      +        +K ++     + G      + D+ P F + +      
Sbjct: 13  DTEQQANDILAQLEKGADFQKLAQKHSTCPSKRNGGDLGEFRKGDMVPAFDKAVFSCELL 72

Query: 256 NTTNPYVTQKGVEYIAIC 273
               P  TQ G   I + 
Sbjct: 73  KPFGPVKTQFGYHVIKVL 90


>gi|289670755|ref|ZP_06491830.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 252

 Score = 60.8 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/191 (10%), Positives = 49/191 (25%), Gaps = 12/191 (6%)

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
           Q       +   A  +I    V+            +I A      +     +L    +  
Sbjct: 51  QDDPVVAARIRQATDAILAKAVQTRARESARIDASQIKAQFDAHPHDYDEVHLSHLFVAL 110

Query: 187 IPDNKLQ-----NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKA-QYLLE 239
            P  + +            R +  ++             + +         G+     L 
Sbjct: 111 KPQGEARRGTPLTDAQALARAQRLKQQLESGTPFAELAMRESDDGSTAAEGGELSPIFLR 170

Query: 240 SDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
           +        +   +    + P    +G   I +  +R    + A       Q      ++
Sbjct: 171 NVADAFVAPVQDLAVGQVSAPVRGPEGYHLIRVDARRPATLDSA-----RGQIEVQLRDQ 225

Query: 300 HEAEYVKKLRS 310
             A+ +++LR 
Sbjct: 226 AAADALEQLRQ 236


>gi|158429497|pdb|2PV1|A Chain A, Crystallographic Structure Of Sura First Peptidyl-Prolyl
           Isomerase Domain Complexed With Peptide Weyipnv
 gi|158429499|pdb|2PV2|A Chain A, Crystallographic Structure Of Sura First Peptidyl-Prolyl
           Isomerase Domain Complexed With Peptide Nftlkfwdifrk
 gi|158429500|pdb|2PV2|B Chain B, Crystallographic Structure Of Sura First Peptidyl-Prolyl
           Isomerase Domain Complexed With Peptide Nftlkfwdifrk
 gi|158429501|pdb|2PV2|C Chain C, Crystallographic Structure Of Sura First Peptidyl-Prolyl
           Isomerase Domain Complexed With Peptide Nftlkfwdifrk
 gi|158429502|pdb|2PV2|D Chain D, Crystallographic Structure Of Sura First Peptidyl-Prolyl
           Isomerase Domain Complexed With Peptide Nftlkfwdifrk
          Length = 103

 Score = 60.8 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 7/97 (7%), Positives = 26/97 (26%), Gaps = 1/97 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
             ++    +         + + +   +               ++    ++ G+  +    
Sbjct: 7   HILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQ 66

Query: 241 DLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKR 276
           +L   F        + +   P  +  G   + + D R
Sbjct: 67  ELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLR 103


>gi|126653292|ref|ZP_01725403.1| hypothetical protein BB14905_08958 [Bacillus sp. B14905]
 gi|126589966|gb|EAZ84095.1| hypothetical protein BB14905_08958 [Bacillus sp. B14905]
          Length = 323

 Score = 60.8 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/303 (9%), Positives = 79/303 (26%), Gaps = 36/303 (11%)

Query: 6   FTSLSDFIKLLTTYFV--LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL 63
                  + ++    +  ++ F    I +      S      I+G+VIT  +    +   
Sbjct: 24  RLKTKPALSVIAVLLLGNILWFIAWAIPNKSQEIGSDEQVAAIDGDVITRQEWMIAM--- 80

Query: 64  KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
                     K  +Q L+ E++ ++  +   I      ++                    
Sbjct: 81  -----EERYGKETLQNLVNESVMEKAAKTYKIKVTDQEIDLELALMRS------AQDKFD 129

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
              Q +     +Q +  Q I   V+  D +       +E    + +    T   Y    +
Sbjct: 130 TAMQNLSAEQLRQKIRSQLILDKVLTKDVV--ISEESIEKYYEENQGLYNTKTSYRTNFI 187

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESD- 241
                          +K   +A               + +         G   +L E+  
Sbjct: 188 E-----------VDAKKAADEALGELKNGSDFSVLAREISLDSASASLGGDVGFLTENQE 236

Query: 242 --LHPQFQNLLKKSQNNTTNPYVTQKGVE-YIAICDKRDLGGE--IALKAYLSAQNTPTK 296
                    +     N  +  +    G    + + +  +        +K ++  +    +
Sbjct: 237 NVDPAIINAVKSTKANEVSKAFKLDNGHYGIVQVQEVLEGQSFTYDDVKEHIERELALEQ 296

Query: 297 IEK 299
           + +
Sbjct: 297 LPQ 299


>gi|254456904|ref|ZP_05070332.1| peptidyl-prolyl cis-trans isomerase [Campylobacterales bacterium GD
           1]
 gi|207085696|gb|EDZ62980.1| peptidyl-prolyl cis-trans isomerase [Campylobacterales bacterium GD
           1]
          Length = 92

 Score = 60.8 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 7/80 (8%), Positives = 19/80 (23%), Gaps = 1/80 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +      +          +  +  +        G         + P+F + +      
Sbjct: 12  ASEDECNTLKAEIENGASFESVAQAHSQCPSGAQGGDLGQFGPGQMVPEFDKAVFSGDVG 71

Query: 256 NTTNPYVTQKGVEYIAICDK 275
               P  TQ G   + +  +
Sbjct: 72  VLYGPIQTQFGYHLLEVTSR 91


>gi|313201571|ref|YP_004040229.1| EpsD family peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
           MP688]
 gi|312440887|gb|ADQ84993.1| peptidyl-prolyl cis-trans isomerase, EpsD family [Methylovorus sp.
           MP688]
          Length = 276

 Score = 60.8 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/277 (7%), Positives = 69/277 (24%), Gaps = 42/277 (15%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKING--ELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              ++G+ I+   +++ I  +     +   ++ K  + +LI + +      +  I   ++
Sbjct: 2   IAKVDGKEISLLQLNQAIKNVPNVNSSNVDQVRKQLLDKLIDQQIVLNVALEQKIDRSAD 61

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
            V                                 +    + I    + N    +     
Sbjct: 62  VVASI------------------------------EAAKREIIARAYLTNLVTSRIKPTP 91

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            ++         +     +      S+P     +     K         +        ++
Sbjct: 92  QQVKQYFDTHPELFSERKVYNLQDISLPAETEISPALTDKVNSSKSLQDIAEWLKTQNVK 151

Query: 221 KFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG- 279
             AS                 +     + LK  ++ + +          + +        
Sbjct: 152 FGASSYSK---------PAEQMPLDALSTLKSMRDGSVSLLTMDGSHHIVRLVAAVSAPM 202

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                K  +      ++ +K     + +L+  A + Y
Sbjct: 203 SYEQAKPMIQMYLVNSEGQKLIKSEITRLKEKAKVEY 239


>gi|186472670|ref|YP_001860012.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phymatum STM815]
 gi|184195002|gb|ACC72966.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phymatum STM815]
          Length = 250

 Score = 60.8 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/268 (11%), Positives = 73/268 (27%), Gaps = 26/268 (9%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              I+ EV+   D+ + I LLKL      L    +++++ + L     +K G+T      
Sbjct: 4   IVRIDDEVV---DVGEFIRLLKLTGQFESL----IEQMVRDKLAVHAAKKHGVTVS---- 52

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                + A           +    Q +             I   + +   + +    + E
Sbjct: 53  ADEIQERADQFRRVRGLHRAADMNQYLDTLKISLDDFEAFITDGLFQEKMLDQV-GSDSE 111

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           I               +   +L               K  +     R           + 
Sbjct: 112 IEEYFSMNSPKFDALEVSHILLDDEG-----------KAKEMISYLREDPDAFAEMAREH 160

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKG--VEYIAICDKRDLG 279
           +      S G    +L   L P  +  +  +   +   P+ +      E  A+  K    
Sbjct: 161 SIADTKDSGGVIGKVLRGSLKPDIEAKIFNAGVGDLLGPFASPDRSCFEIFAVTAKYPAQ 220

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKK 307
            +  + + +        +     E++ +
Sbjct: 221 LDADVASEIKRLLREQWLMARAQEHIIE 248


>gi|255639387|gb|ACU19989.1| unknown [Glycine max]
          Length = 146

 Score = 60.8 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 28/103 (27%), Gaps = 2/103 (1%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
                R +L        +    + +        ++   +     ++++        G   
Sbjct: 45  TYVEARRILCEKQGKINETYKKL-QDGWLGNGDKVPPAEFAKVAQEYSECPSGKKGGDLG 103

Query: 236 YLLESDLH-PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
           +     +  P  +         T+ P+ +  G   I    +++
Sbjct: 104 WFPRGRMAGPFQEVAFNTPVGATSAPFKSTHGYHIILSEGRKN 146


>gi|119898534|ref|YP_933747.1| hypothetical protein azo2243 [Azoarcus sp. BH72]
 gi|119670947|emb|CAL94860.1| conserved hypothetical secreted protein [Azoarcus sp. BH72]
          Length = 299

 Score = 60.8 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/287 (9%), Positives = 68/287 (23%), Gaps = 42/287 (14%)

Query: 33  YKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--ELEKIAVQELIVETLKKQEI 90
                    +   +N   I+   + + I   +    +         ++ LI E       
Sbjct: 23  GARSGSDEAVAARVNDRAISVSQVDQAIPRDEPMSADDIARARSAVLESLIDE------- 75

Query: 91  EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
                           +    N      +     + +        +    Q         
Sbjct: 76  --------------ELMVQKANARRLDLEPRVSEELEAARRRILARAYLEQVTA------ 115

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
               +  +  +              R Y            +L+    +  R +D+     
Sbjct: 116 -VDPRPDDEAVSAFYRSHPALFAERRIYSFHEFNIQARPERLEALRALAVRERDSAAIAA 174

Query: 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYI 270
            L ++        + +               L  +  N   + ++       T  G E +
Sbjct: 175 TLEREGLSFAARVAVLPA-----------EQLPFERLNAFSRLKDGDNLLTPTPYGAELV 223

Query: 271 AI-CDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            +   +R    E + +  +       +  +   +  ++LR +A I Y
Sbjct: 224 HLASSRRQPLDEASARPVIEQFLRNRERVELARDEARRLRKSAEIEY 270


>gi|148284256|ref|YP_001248346.1| hypothetical protein OTBS_0439 [Orientia tsutsugamushi str.
           Boryong]
 gi|146739695|emb|CAM79505.1| conserved hypothetical protein [Orientia tsutsugamushi str.
           Boryong]
          Length = 291

 Score = 60.8 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/315 (11%), Positives = 92/315 (29%), Gaps = 35/315 (11%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-- 70
           +  + T+F+ II       +  +     +I   ++G  IT   + K   ++     +   
Sbjct: 1   MNKILTFFLTIIVVCNSSGALAAT----KIVAIVDGTPITSHQLDKFGKVITFLHRSQSL 56

Query: 71  ------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                 EL  IA++ LI   +   E ++ GI    + +N F     +   L  + F   +
Sbjct: 57  TSISDSELTTIALEALIDRVIFLNEAKRYGIEASQDEINQFIAMEEKAINLPDQYFKYAI 116

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            +  +  + F  +  ++ I   + +        N+   +  + +  +             
Sbjct: 117 KEAEVSYDAFMMFYEVRVIISKINRMLAKSTNRNIVDLLLLSTKPTEVKF---------- 166

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYLLESDLH 243
                  L                           +++A+             +   D  
Sbjct: 167 -------LVASSTNTSNNYKKLLVLRSKISCNVDAKEYANLAEVKCITKDLNDINTHDRV 219

Query: 244 PQFQNLLKKSQNNTTNPYVTQKGVE-YIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEA 302
                L    +N+++    +   +  +  +C +            L  +    ++     
Sbjct: 220 ----ILESMKENSSSRIIESDNNILKFFHLCSREVKNVTEQEHNDLVNKVFSNQVNMELN 275

Query: 303 EYVKKLRSNAIIHYY 317
           ++  KL   A I  +
Sbjct: 276 KFRNKLLGRAYIKVF 290


>gi|255067238|ref|ZP_05319093.1| conserved hypothetical protein [Neisseria sicca ATCC 29256]
 gi|255048606|gb|EET44070.1| conserved hypothetical protein [Neisseria sicca ATCC 29256]
          Length = 287

 Score = 60.8 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/300 (11%), Positives = 92/300 (30%), Gaps = 27/300 (9%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVET 84
              + + +  S ++S++   T+NG+ I    I  ++A L+             +EL    
Sbjct: 6   LISMLMTALVSGSLSAQTLVTVNGQTIDSSVIDAQVAALRAANNKIPDSPELRRELTERQ 65

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
           +    + +       +    F          + +  +            F+  L  Q+  
Sbjct: 66  VINTVVSQEAKRLKLDQSAEFKQALEHARTDAKKQGADKKAHFKTEWAAFESDLLGQAYA 125

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
             V++          +++   +         +E  +  ++     +  +    +  +   
Sbjct: 126 IHVLRQ---NPVQEKDVKTAYDNFSNFYKGTQEVQLGEIITRTQADAQKAISDLNAK--- 179

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVSIGKA--QYLLESDL----HPQFQNLLKKSQN-NT 257
                       + L++++        G     Y+   DL     P +  +    +  +T
Sbjct: 180 --------KSFASVLKQYSIDERAKQAGGIQQGYVPLKDLQEAVPPLYAAVKDLKKGAHT 231

Query: 258 TNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           T P           + D+RD+        K+ ++     +++++     ++K    A I 
Sbjct: 232 TTPLQDSDVYAVFYVNDRRDVKLPSYDESKSSIAQDLQASRVDEALQSLLQK----ATIK 287


>gi|77920470|ref|YP_358285.1| peptidyl-prolyl cis-trans isomerase activity [Pelobacter
           carbinolicus DSM 2380]
 gi|77546553|gb|ABA90115.1| peptidyl-prolyl cis-trans isomerase activity [Pelobacter
           carbinolicus DSM 2380]
          Length = 93

 Score = 60.8 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 8/79 (10%), Positives = 20/79 (25%), Gaps = 1/79 (1%)

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNN 256
            ++     ++             +++        G         +  +F + +       
Sbjct: 13  TEEECLSLKKRIEAGETFAAIAGQYSKCPSGRQGGALGEFRPGQMVKEFDEVVFSGEIGK 72

Query: 257 TTNPYVTQKGVEYIAICDK 275
              P  TQ G   I I  +
Sbjct: 73  VLGPVKTQFGYHLIEILSR 91


>gi|237806951|ref|YP_002891391.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Tolumonas auensis
           DSM 9187]
 gi|237499212|gb|ACQ91805.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Tolumonas auensis
           DSM 9187]
          Length = 93

 Score = 60.8 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 10/78 (12%), Positives = 22/78 (28%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQN 255
             + +  D  +            +K+++       G      + D+   F N +      
Sbjct: 13  KTEAQALDIMKQLAAGADFQQLAKKYSTCPSKKRGGDLGEFKKGDMVASFDNAVFSCELL 72

Query: 256 NTTNPYVTQKGVEYIAIC 273
               P  T+ G   I + 
Sbjct: 73  QPVGPVKTRFGYHIIKVL 90


>gi|218885414|ref|YP_002434735.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756368|gb|ACL07267.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 94

 Score = 60.5 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 19/80 (23%), Gaps = 1/80 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +    + +   L            +        G         + P+F + +      
Sbjct: 12  DTEDACNELKARILAGEDFAEVARAHSKCPSGRRGGDLGEFPRGAMVPEFDEVVFTGEVG 71

Query: 256 NTTNPYVTQKGVEYIAICDK 275
               P  TQ G   I +  +
Sbjct: 72  TVLGPVRTQFGHHLIEVTAR 91


>gi|317014080|gb|ADU81516.1| hypothetical protein HPGAM_03410 [Helicobacter pylori Gambia94/24]
          Length = 415

 Score = 60.5 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 85/290 (29%), Gaps = 35/290 (12%)

Query: 32  SYKSWAMSSRIR----TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKK 87
           +  +  +  ++       +NG  IT   I +       Q+ +   +  A   LI E +K 
Sbjct: 149 NATNNTLEDKVVGGISLLVNGSPITLYQIQEE------QEKSKVSKAQARDRLIAERIKN 202

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           QEIE+  I  D + ++      A+  G+  + F   L  +G     ++  L       ++
Sbjct: 203 QEIERLKIHVDDDKLDQEMAMMAQQQGMDLDHFKQMLMAEGHYKL-YRDQLKEHLEMQEL 261

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           ++N  +        E    +   K+                    ++             
Sbjct: 262 LRNILLTNVDTSS-ETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMADPNLEVP 320

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGV 267
              +  +                       +++      Q  +   Q + T       G 
Sbjct: 321 GVSKANEKIE--------------------MKTLNPQIAQVFISHEQGSFTPVMNGGGGQ 360

Query: 268 EY---IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                I     ++       K +++ +      +K   E+ +KLR  + I
Sbjct: 361 FITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEKLRVKSRI 410


>gi|325283666|ref|YP_004256207.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
           proteolyticus MRP]
 gi|324315475|gb|ADY26590.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
           proteolyticus MRP]
          Length = 349

 Score = 60.5 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/267 (8%), Positives = 58/267 (21%), Gaps = 24/267 (8%)

Query: 35  SWAMSSRIRTTINGEV----ITDGDISKRIALLK---LQKINGELEKIAVQELIVETLKK 87
           S    + +   I        +T  D  +   L     L +    L    +        + 
Sbjct: 41  SGQPENDLLAIIGSGPGALRVTRADFDRAFRLAVGEVLNRQGLPLRDDLLTSFAPSRSQF 100

Query: 88  QEIEKSGITFDSNTVNYFFVQHAR----NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            E        +            +        S      + D         +     +  
Sbjct: 101 FEQFIHDKQVEYLARQALPEFTYQGPPRIGVHSFAQPQGYADYLTGAGYRDEADYLSEMA 160

Query: 144 WPDVV---KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
              ++   +++   ++   +  + +     ++  V+          +          V  
Sbjct: 161 RRALLDAYRSELRTRFTFSDAAVESYYALNRHSFVQREEACARHILVTSEVQARDLRVA- 219

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN 259
                    L            +         G+   L   +    F+  L  +   T  
Sbjct: 220 --------LLAGADFALLARSQSRDPGSASRGGELGCLAPGETVAAFEATLFGAALGTPQ 271

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKA 286
              T  G   + + ++   G     +A
Sbjct: 272 VVQTDHGWHVVEVTERHAAGVIPPEQA 298


>gi|309775740|ref|ZP_07670736.1| putative foldase protein PrsA [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916503|gb|EFP62247.1| putative foldase protein PrsA [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 332

 Score = 60.5 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/325 (12%), Positives = 88/325 (27%), Gaps = 28/325 (8%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVS----------YKSWAMSSRIRTTINGEVITDGDISK 58
           +    K      + +IF    I S           KS      +        IT  ++  
Sbjct: 2   IKILKKQWFVVLIALIFIGFAIFSVYDTNKGKLPGKSVDGKDVVAGLKGDVNITADEL-- 59

Query: 59  RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
               L        L      E+I +++K  +  K       + +       A ++G  A+
Sbjct: 60  -YKNLNKTYGKSMLFMKFQAEVIDKSVKTSDELKKTAETYESNIKQSAQSQASSSGADAD 118

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
              +    Q    +       +     + ++ND++ K+                   +  
Sbjct: 119 ALIAQNIAQYGFTSDQLYEYCMTVAKMEKLQNDYIDKH-------LDELFTPIYKEKKSR 171

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
            +  +L  + D K   +  ++K     E++  +     +  +K++        G   Y+ 
Sbjct: 172 TVSHILIKMEDAKNPTKKELEKVQ-KVEDALKKGDSFADVAKKYSDDSSASDGGYLGYMD 230

Query: 239 ESD--LHPQFQNLLKKSQNNTTNPYVTQ----KGVEYIAICDKRDLGGEIALK-AYLSAQ 291
                +        K     T++          G   I + +      E   K      +
Sbjct: 231 SDTSYVDSFKNAAFKLKAGETSDWVKESNDNYNGWHLIRVEETDKAKLEKDKKAKESLYK 290

Query: 292 NTPTKIEKHEAEYVKKLRSNAIIHY 316
                 +     Y+ +      I Y
Sbjct: 291 AIANGTQNLSNTYLWEAAKKLDIKY 315


>gi|213418227|ref|ZP_03351293.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 86

 Score = 60.5 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 2/83 (2%)

Query: 236 YLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNT 293
           +       P F++ L K      + P  +  G   I + D R +   + A K        
Sbjct: 1   WATPDIFDPAFRDALTKLHKGQISAPVHSSFGWHLIELLDTRKVDKTDAAQKDRAYRMLM 60

Query: 294 PTKIEKHEAEYVKKLRSNAIIHY 316
             K  +  A ++++ R++A +  
Sbjct: 61  NRKFSEEAATWMQEQRASAYVKI 83


>gi|209809291|ref|YP_002264829.1| peptidyl-prolyl cis-trans isomerase C [Aliivibrio salmonicida
           LFI1238]
 gi|208010853|emb|CAQ81253.1| peptidyl-prolyl cis-trans isomerase C [Aliivibrio salmonicida
           LFI1238]
          Length = 92

 Score = 60.5 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 27/75 (36%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +++ +D  +   +  K     +K++S       G      +  + PQF  +    +    
Sbjct: 15  KEQAEDIIKQLNKGAKFHVLAKKYSSCPSGKKGGDLGEFKKGQMVPQFDKVCFSGETLVP 74

Query: 259 NPYVTQKGVEYIAIC 273
           +   T+ G   I + 
Sbjct: 75  HLVKTKFGWHVIKVL 89


>gi|49073566|gb|AAT49329.1| PA4176 [synthetic construct]
          Length = 94

 Score = 60.5 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 25/80 (31%), Gaps = 1/80 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           + +  + + +            + +S       G         +  +F  ++  +  N  
Sbjct: 14  EAKCNELKTAIEGGADFAEVAREHSSCPSGRDGGNLGSFGPGQMVREFDQVVFSAPLNVV 73

Query: 259 -NPYVTQKGVEYIAICDKRD 277
             P  TQ G   + +  ++D
Sbjct: 74  QGPVKTQFGYHLLEVTSRQD 93


>gi|15599371|ref|NP_252865.1| peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa
           PAO1]
 gi|218889495|ref|YP_002438359.1| peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa
           LESB58]
 gi|254237056|ref|ZP_04930379.1| peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa
           C3719]
 gi|254242860|ref|ZP_04936182.1| peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa
           2192]
 gi|9950385|gb|AAG07563.1|AE004834_3 peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa
           PAO1]
 gi|126168987|gb|EAZ54498.1| peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa
           C3719]
 gi|126196238|gb|EAZ60301.1| peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa
           2192]
 gi|218769718|emb|CAW25478.1| peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa
           LESB58]
          Length = 93

 Score = 60.5 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 25/80 (31%), Gaps = 1/80 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           + +  + + +            + +S       G         +  +F  ++  +  N  
Sbjct: 14  EAKCNELKTAIEGGADFAEVAREHSSCPSGRDGGNLGSFGPGQMVREFDQVVFSAPLNVV 73

Query: 259 -NPYVTQKGVEYIAICDKRD 277
             P  TQ G   + +  ++D
Sbjct: 74  QGPVKTQFGYHLLEVTSRQD 93


>gi|284043450|ref|YP_003393790.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Conexibacter woesei
           DSM 14684]
 gi|283947671|gb|ADB50415.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Conexibacter woesei
           DSM 14684]
          Length = 379

 Score = 60.5 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/255 (9%), Positives = 53/255 (20%), Gaps = 18/255 (7%)

Query: 52  TDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
           T+  +  +   L     +  L   +V +L+       E E+ GI      V         
Sbjct: 98  TESQLVAQCRQL-----DEALRNRSVAQLVQMVWLDGETERLGIEVTDADVERAKRATFP 152

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
             G              + +   +  L    +   + ++         + EI A   + +
Sbjct: 153 RAGDMQRTLRQLG----MTERDVEFQLRFNQLSTRLTEHLQRRPVDVGDAEISAYYARNR 208

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
                       L         N          A  +  R        +           
Sbjct: 209 EQFAVPERRDLELILTRTETQANDAKRAVEGGTAWAAAARRWSTDELSK-------GNGG 261

Query: 232 GKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK--AYLS 289
                                 +     P   Q G   + +            +  A + 
Sbjct: 262 RLLGVARGQQDRALDAAAFDARRGVLLGPVRGQFGWYLVRVTRVTPSKQSTLAESSAQIR 321

Query: 290 AQNTPTKIEKHEAEY 304
                 + ++   EY
Sbjct: 322 ELVRQQESQRAMQEY 336


>gi|208434581|ref|YP_002266247.1| hypothetical protein HPG27_621 [Helicobacter pylori G27]
 gi|208432510|gb|ACI27381.1| hypothetical protein HPG27_621 [Helicobacter pylori G27]
          Length = 415

 Score = 60.5 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 85/290 (29%), Gaps = 35/290 (12%)

Query: 32  SYKSWAMSSRIR----TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKK 87
           +  +  +  ++       +NG  IT   I +       QK +   +  A   LI E +K 
Sbjct: 149 NAANNTLEDKVVGGISLLVNGSPITLYQIQEE------QKKSKVSKAQARDRLIAERIKN 202

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           QEIE+  I  D + ++      A+  G+  + F   L  +G     ++  L       ++
Sbjct: 203 QEIERLKIHVDDDKLDQEMAMMAQQQGMDLDHFKQMLMAEGHYKL-YRDQLKEHLEMQEL 261

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           ++N  +        E    +   K+                    ++             
Sbjct: 262 LRNILLTNVDTSS-ETKMREYYNKHKEQFSIPTEIETVRYTSTSQEDLERAMADPNLEIP 320

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGV 267
              +  +                       +++      Q  +   Q + T       G 
Sbjct: 321 GVSKANEKIE--------------------MKTLNPQIAQVFISHEQGSFTPVMNGGGGQ 360

Query: 268 EY---IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                I     ++       K +++ +      +K   E+ +KLR  + I
Sbjct: 361 FITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEKLRVKSRI 410


>gi|88857682|ref|ZP_01132325.1| peptidyl-prolyl cis-trans isomerase C (rotamase C)
           [Pseudoalteromonas tunicata D2]
 gi|88820879|gb|EAR30691.1| peptidyl-prolyl cis-trans isomerase C (rotamase C)
           [Pseudoalteromonas tunicata D2]
          Length = 92

 Score = 60.5 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 25/75 (33%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +++  D      +  K     +KF+S     + G         + PQF  ++   +    
Sbjct: 15  KEQADDIIAQLKKGAKFQTLAKKFSSCPSGKNGGDLGEFKRGQMVPQFDKVVFSCEVLEP 74

Query: 259 NPYVTQKGVEYIAIC 273
               T+ G   I + 
Sbjct: 75  QLVKTRFGWHVIKVL 89


>gi|308061989|gb|ADO03877.1| hypothetical protein HPCU_03575 [Helicobacter pylori Cuz20]
          Length = 403

 Score = 60.5 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 83/288 (28%), Gaps = 35/288 (12%)

Query: 34  KSWAMSSRIR----TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
               +  ++       +NG  IT   I +       Q+ +   +  A   LI E +K QE
Sbjct: 139 AGSTLEDKVVGGISLLVNGSPITLYQIQEE------QEKSKVSKAQARDRLIAERIKNQE 192

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
           IE+  I  D + ++      A+  G+  + F   L  +G     ++  L       ++++
Sbjct: 193 IERLKIHVDDDKLDQEMAMMAQQQGMDLDHFKQMLMAEGHYKL-YRDQLKEHLEMQELLR 251

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
           N  +        E    +   K+                    ++               
Sbjct: 252 NILLTNVDTSS-ETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMADPNLEIPGV 310

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY 269
            +  +                       +++      Q  +   Q + T       G   
Sbjct: 311 SKANEKIE--------------------MKTLNPQIAQVFISHEQGSFTPVMNGGGGQFI 350

Query: 270 ---IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              I     ++       K +++ +      +K   E+ +KLR  + I
Sbjct: 351 TFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEKLRVKSRI 398


>gi|119491393|ref|ZP_01623412.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lyngbya sp. PCC
           8106]
 gi|119453388|gb|EAW34551.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lyngbya sp. PCC
           8106]
          Length = 253

 Score = 60.5 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/271 (8%), Positives = 71/271 (26%), Gaps = 27/271 (9%)

Query: 45  TINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           T+N E IT   + + +  L+            +++ +++       +++     ++    
Sbjct: 7   TVNDEPIT---LGQSLRYLQSSGKLQSFIGEMLRQYVLDKEL--AAQENLNINSASVEQA 61

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
                        + F  +L++  +  + F Q +        +  +    +      E  
Sbjct: 62  VINFRLERNLSDPQAFQEWLERNQMSYDSFHQQVEAGFKRETLKLSIVQPQLEAYFQERK 121

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
           +                     +    + +    +   +  +E   R  +      +++ 
Sbjct: 122 SFLDT---------------IILSRIVVADYELAETLHRRLQEEEARFEQ---LAREYSL 163

Query: 225 KIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIA 283
                  G    +    L    + ++  +       P   +       +    +   E  
Sbjct: 164 TPERNVNGMMGAVSLGSLPENLKPIMTVATLGQIVGPVEIEGRWCIFRVEQLIEASFEDP 223

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
               L  +      E+   E +K L     I
Sbjct: 224 K---LKQKLQNELFERWINEKLKSLTVKMQI 251


>gi|119471814|ref|ZP_01614147.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Alteromonadales
           bacterium TW-7]
 gi|119445304|gb|EAW26593.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Alteromonadales
           bacterium TW-7]
          Length = 93

 Score = 60.5 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 24/80 (30%), Gaps = 1/80 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           + +  D +    +        +  ++       G         + P+F + +     N  
Sbjct: 14  EAQCLDLKTKIEQGEDFAELAKVHSNCPSGQDGGALGEFGPGMMVPEFDKVVFSAPINQV 73

Query: 258 TNPYVTQKGVEYIAICDKRD 277
             P  TQ G   + +  + +
Sbjct: 74  QGPVQTQFGYHLLEVTSRSE 93


>gi|225075434|ref|ZP_03718633.1| hypothetical protein NEIFLAOT_00439 [Neisseria flavescens
           NRL30031/H210]
 gi|224953252|gb|EEG34461.1| hypothetical protein NEIFLAOT_00439 [Neisseria flavescens
           NRL30031/H210]
          Length = 290

 Score = 60.5 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/304 (10%), Positives = 82/304 (26%), Gaps = 20/304 (6%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +  TYF   +   +   +  +         T+NG+ I    I  ++A ++    N +   
Sbjct: 1   MKKTYFTSALMLALTSGTLFAQT-----LATVNGQAIDSSVIDDQVASVRASNPNVQDTP 55

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
              Q L    +    + +       +    F     +    +A+  +            F
Sbjct: 56  ELRQMLTERQVISTVVTQEAKKLKLDQSAEFKTALEQARADAAKQGADKKATFKTEWAVF 115

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
           +  L  Q+    +V+          +++   N         +E  +  ++     N  + 
Sbjct: 116 ENDLLGQAFAAHIVRQ---YPVQEKDVKAAYNDFSNFYKGTQEVQLGEIVTDSSSNAQKA 172

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ 254
              +  +         +   D    +        V +       +    P +  +    +
Sbjct: 173 IADLDAKKS-FVSVLNQYSIDEAAKKAGGIPKAYVPLKDL----QESAPPLYAAVKDLKK 227

Query: 255 NNTTN-PYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
              T  P           + D+R+  +      K  + +     +++      +      
Sbjct: 228 GAHTKTPLQNGNLYAVFYVNDRRNVTVPSYETAKNEIGSDLQAARVDAAIQSLL----KK 283

Query: 312 AIIH 315
           A I 
Sbjct: 284 ASIK 287


>gi|189182933|ref|YP_001936718.1| hypothetical protein OTT_0026 [Orientia tsutsugamushi str. Ikeda]
 gi|189179704|dbj|BAG39484.1| hypothetical protein OTT_0026 [Orientia tsutsugamushi str. Ikeda]
          Length = 291

 Score = 60.5 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/315 (11%), Positives = 91/315 (28%), Gaps = 35/315 (11%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-- 70
           +  +  +F+ II       +  +     +I   ++G  IT   + K   ++     +   
Sbjct: 1   MNKILAFFLTIIVVCNSSGALAAT----KIVAIVDGTPITSHQLDKFRKVITFLHRSQSL 56

Query: 71  ------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                 EL  IA++ LI   +   E ++ GI    + +N F     +   L  + F   +
Sbjct: 57  TSISDSELTTIALEALIDRVIFLNEAKRYGIEASQDEINQFIAMEEKAINLPDQYFKYAI 116

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            +  +  + F  +  ++ I   + +        N+   +  + +  +             
Sbjct: 117 KESEVSYDAFLMFYEVRVIISKINRMLAKSTNRNIVDLLLLSTKPTEVKF---------- 166

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYLLESDLH 243
                  L                           +++A+             +   D  
Sbjct: 167 -------LVASNTNTSNNYKKMLVLRSKISCNVDAKEYANLAEVKCITKDLNDVNTHDRV 219

Query: 244 PQFQNLLKKSQNNTTNPYVTQKGVE-YIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEA 302
                L    +N+++    +   +  +  +C +            L  +    ++     
Sbjct: 220 ----ILESMKENSSSRIIESDNNILKFFHLCSREVKNVTEQEHNDLVNKVFSNQVNMELN 275

Query: 303 EYVKKLRSNAIIHYY 317
           ++  KL   A I  +
Sbjct: 276 KFRNKLLGRAYIKVF 290


>gi|114048893|ref|YP_739443.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-7]
 gi|117919077|ref|YP_868269.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           ANA-3]
 gi|113890335|gb|ABI44386.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-7]
 gi|117611409|gb|ABK46863.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           ANA-3]
          Length = 92

 Score = 60.5 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 8/75 (10%), Positives = 25/75 (33%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +++ +D  +   +        ++++S       G         + PQF  +    +    
Sbjct: 15  KEQAEDIIKQLNKGANFGALAKRYSSCPSAKKGGDLGEFKRGQMVPQFDKVAFSGELLVP 74

Query: 259 NPYVTQKGVEYIAIC 273
           +   T+ G   + + 
Sbjct: 75  HLVKTKFGWHVVKVL 89


>gi|315125622|ref|YP_004067625.1| peptidyl-prolyl cis-trans isomerase C (rotamase C)
           [Pseudoalteromonas sp. SM9913]
 gi|315014135|gb|ADT67473.1| peptidyl-prolyl cis-trans isomerase C (rotamase C)
           [Pseudoalteromonas sp. SM9913]
          Length = 93

 Score = 60.5 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 10/80 (12%), Positives = 26/80 (32%), Gaps = 1/80 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNT 257
           + +  D ++   +        +  ++       G         + P+F  ++  +  N  
Sbjct: 14  EAQCLDLKDKIEQGEDFAELAKLHSNCPSGQDGGALGEFGPGMMVPEFDKVVFSAPLNQV 73

Query: 258 TNPYVTQKGVEYIAICDKRD 277
             P  TQ G   + I  + +
Sbjct: 74  QGPVQTQFGYHLLEITSRSE 93


>gi|90414390|ref|ZP_01222367.1| putative peptidyl-prolyl cis-trans isomerase C [Photobacterium
           profundum 3TCK]
 gi|90324503|gb|EAS41059.1| putative peptidyl-prolyl cis-trans isomerase C [Photobacterium
           profundum 3TCK]
          Length = 92

 Score = 60.5 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 4/77 (5%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           Q++ +D  E   +  K     +K+++     S G      +  + PQF  +         
Sbjct: 15  QEKAEDIIEQLKKGAKFQTLAKKYSNCPSGKSGGDLGEFRKGQMVPQFDKV--CFTGELL 72

Query: 259 NP--YVTQKGVEYIAIC 273
            P    T+ G   + + 
Sbjct: 73  TPHLVKTKFGWHIVKVL 89


>gi|299470956|emb|CBN79940.1| peptidyl prolyl cis/trans isomerase like [Ectocarpus siliculosus]
          Length = 308

 Score = 60.5 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 11/88 (12%), Positives = 24/88 (27%), Gaps = 1/88 (1%)

Query: 209 RLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVE 268
                +  +     +S       G   +  +  +  +F+    ++   T     TQ G  
Sbjct: 118 IKSGEQFGDVATDMSSCPSKDKGGDLGWFKKGQMVAEFEAACFENDPGTIVKVQTQFGWH 177

Query: 269 YIAICDKRDLGGEIALKAYLSAQNTPTK 296
            +A+   R +         L       K
Sbjct: 178 VVALLS-RAILPRQMAVEELGEILELAK 204


>gi|320163725|gb|EFW40624.1| NIMA-interacting 1 [Capsaspora owczarzaki ATCC 30864]
          Length = 191

 Score = 60.5 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/158 (7%), Positives = 32/158 (20%), Gaps = 3/158 (1%)

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
           G      ++            K      ++  +           N           +   
Sbjct: 32  GWEIRHSATKKRAYYFHVPTQKSQWEPPALNSNAEDESESNDASNSSTMSQVRASHILAK 91

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGK 233
                  R   +   +        +    +   +   +     +  +  +      S G 
Sbjct: 92  HKDSR--RPSSWKTQNITRSRDEALAMIQQWRAQIVNKEKTFADIAKVESDCSSAKSGGD 149

Query: 234 AQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
             +     +   F++          + P  T  GV  I
Sbjct: 150 LGFFGPGQMQAPFEHATFALQVGELSEPVFTDSGVHII 187


>gi|88860987|ref|ZP_01135622.1| peptidyl-prolyl cis-trans isomerase C (rotamase C)
           [Pseudoalteromonas tunicata D2]
 gi|88816915|gb|EAR26735.1| peptidyl-prolyl cis-trans isomerase C (rotamase C)
           [Pseudoalteromonas tunicata D2]
          Length = 92

 Score = 60.5 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 8/78 (10%), Positives = 26/78 (33%), Gaps = 1/78 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNT 257
           ++   + ++            +  ++     + G+        + P+F  ++  +  N  
Sbjct: 14  EEHCLELKKQIESGADFAQVAKDHSTCPSGQAGGELGEFGPGMMVPEFDTVVFSAPVNTV 73

Query: 258 TNPYVTQKGVEYIAICDK 275
             P  TQ G   + +  +
Sbjct: 74  QGPVQTQFGYHLLEVTSR 91


>gi|268316847|ref|YP_003290566.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
           DSM 4252]
 gi|262334381|gb|ACY48178.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
           DSM 4252]
          Length = 684

 Score = 60.5 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/287 (8%), Positives = 69/287 (24%), Gaps = 44/287 (15%)

Query: 33  YKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEK 92
             + A +  +      EVI       + A     +  G   + A   L            
Sbjct: 22  QTNPAENPEVVAVAGSEVIDLTTFEDQYA-----RSVGNRLEAADDSL------------ 64

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
                        F++   N  L  ++  +    +            ++     +++ + 
Sbjct: 65  --------QAYQDFLERYVNYRLRVQEARARGYDRDSAIVAEASAYQLELARNHLMRQEV 116

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ-KRIKDAEESRLR 211
                     I    + +         I  +   +P +          +R++   +S  +
Sbjct: 117 ----------IEPLLRTLYARMPDMVDISHIFVRVPTDATPEDTLAAYRRLQALIDSVRQ 166

Query: 212 LPKDCNKLEKFASKIHDVSI-------GKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVT 263
                    + +      S        G   ++         +     +     +  + T
Sbjct: 167 GADFNEIAFRHSDDPSARSPRSTRGGWGHIGWIKMGQTIEPMETYAFNTPVGELSPIFRT 226

Query: 264 QKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
           + G   + + D++    ++     +       +        +  LR 
Sbjct: 227 RYGYHVLKVHDRKPAPYDVRAAHIMITPAPTPEDSARVRRTLDSLRQ 273



 Score = 58.9 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/152 (7%), Positives = 36/152 (23%), Gaps = 6/152 (3%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-H 227
             +     +     ++ +       +    +      +              + +     
Sbjct: 236 HDRKPAPYDVRAAHIMITPAPTPEDSARVRRTLDSLRQLVLSGKADFAELARQHSEDWRT 295

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKK---SQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL 284
               G   YL  +   P              + ++   T  G+    + D+R +      
Sbjct: 296 KSRGGDLGYLSFAQPMPVMVRDTLFALKEIGDVSHIVTTPFGLHIFQLKDRRPIPPTFEA 355

Query: 285 KAYLSAQNTPT--KIEKHEAEYVKKLRSNAII 314
                        ++++    +V +LR    +
Sbjct: 356 AYDTLLTVADRLGRLQEARNRFVAQLRRRLHV 387


>gi|210134866|ref|YP_002301305.1| hypothetical protein HPP12_0672 [Helicobacter pylori P12]
 gi|210132834|gb|ACJ07825.1| hypothetical protein HPP12_0672 [Helicobacter pylori P12]
          Length = 414

 Score = 60.5 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 85/290 (29%), Gaps = 35/290 (12%)

Query: 32  SYKSWAMSSRIR----TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKK 87
           +  +  +  ++       +NG  IT   I +       Q+ +   +  A   LI E +K 
Sbjct: 148 NAANNTLEDKVVGGISLLVNGSPITLYQIQEE------QERSKVSKAQARDRLIAERIKN 201

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           QEIE+  I  D + ++      A+  G+  + F   L  +G     ++  L       ++
Sbjct: 202 QEIERLKIHVDDDKLDQEMAMMAQQQGMDLDHFKQMLMAEGHYKL-YRDQLKEHLEMQEL 260

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           ++N  +        E    +   K+                    ++             
Sbjct: 261 LRNILLTNVDTSS-ETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMADPNLEIP 319

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGV 267
              +  +                       +++      Q  +   Q + T       G 
Sbjct: 320 GVSKANEKIE--------------------MKTLNPQIAQVFISHEQGSFTPVMNGGGGQ 359

Query: 268 EY---IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                I     ++       K +++ +      +K   E+ +KLR  + I
Sbjct: 360 FITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEKLRVKSRI 409


>gi|332285620|ref|YP_004417531.1| peptidyl-prolyl cis-trans isomerase C [Pusillimonas sp. T7-7]
 gi|330429573|gb|AEC20907.1| peptidyl-prolyl cis-trans isomerase C [Pusillimonas sp. T7-7]
          Length = 93

 Score = 60.5 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 9/81 (11%), Positives = 25/81 (30%), Gaps = 1/81 (1%)

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT 257
            + +  + + +            + +S       G         +  +F  ++  +  N 
Sbjct: 13  TEDKCNELKTAIEGGADFAEVARENSSCPSSRDGGNLGTFGPGQMVKEFDEVVFSAPVNV 72

Query: 258 T-NPYVTQKGVEYIAICDKRD 277
              P  TQ G   + +  ++D
Sbjct: 73  VQGPVKTQFGYHLVEVTSRQD 93


>gi|91200129|emb|CAJ73172.1| Strongly similar to peptidyl-prolyl cis-trans isomerase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 92

 Score = 60.5 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 11/79 (13%), Positives = 24/79 (30%), Gaps = 1/79 (1%)

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNN 256
            Q+  +D +       +     ++++        G         +  +F Q + +     
Sbjct: 13  TQQECEDIKSKIQNGEEFATMAQQYSQCPSGKQGGDLGEFGPGQMVKEFDQVVFRDEVGK 72

Query: 257 TTNPYVTQKGVEYIAICDK 275
              P  TQ G   I I  +
Sbjct: 73  VHGPICTQFGYHLIEITSR 91


>gi|327438069|dbj|BAK14434.1| parvulin-like peptidyl-prolyl isomerase [Solibacillus silvestris
           StLB046]
          Length = 324

 Score = 60.5 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/286 (9%), Positives = 74/286 (25%), Gaps = 34/286 (11%)

Query: 19  YFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQ 78
            F  +++ +    +             + G+ IT       +             K  +Q
Sbjct: 42  LFWFVLWLLPSDETTSEKEDGGEKIAAVEGDPITRQQWLAEM--------ENRYGKETLQ 93

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
            L+ E + ++  EK  +      ++            +     S   +Q          L
Sbjct: 94  SLVNEAVMEKAAEKYKLDVKEEEIDLEIALLRSAQDSNDSTLHSLSPEQ----------L 143

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
             +     ++           E E     +  K+I       RT +  +   +   +   
Sbjct: 144 RQKMRAQLILDKVLTNDIVVKENEAKKYYEDNKSIYNIPTTHRTSIIIVNSKEDAERVEK 203

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESD---LHPQFQNLLKKSQ 254
           + +                   + +         G   ++  S           + K  +
Sbjct: 204 ELK---------DGSDFAVLAREHSLDTASASLGGDIGFISSSQSAVDPAILPEVEKLKE 254

Query: 255 NNTTNPYVTQKG-VEYIAICDKRDLG--GEIALKAYLSAQNTPTKI 297
             T+ P+V   G    + + +  +        ++ ++  Q    ++
Sbjct: 255 KETSKPFVLSDGRYAIVKVTENMEGQSFSFDEVEGHVKRQLALEQL 300


>gi|269137453|ref|YP_003294153.1| parvulin-like peptidyl-prolyl isomerase [Edwardsiella tarda EIB202]
 gi|267983113|gb|ACY82942.1| parvulin-like peptidyl-prolyl isomerase [Edwardsiella tarda EIB202]
 gi|304557527|gb|ADM40191.1| parvulin-like peptidyl-prolyl isomerase [Edwardsiella tarda FL6-60]
          Length = 93

 Score = 60.5 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 9/78 (11%), Positives = 21/78 (26%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             Q   +   +   R  +      + +        G      +  + P+F + +      
Sbjct: 13  ESQAEAESLLQKLKRGAQFQTLARRHSRCPSKRQGGDLGEFTKGSMVPEFDRAVFSGPLL 72

Query: 256 NTTNPYVTQKGVEYIAIC 273
               P  T+ G   I + 
Sbjct: 73  TPIGPIKTRFGYHIIKVL 90


>gi|117925439|ref|YP_866056.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Magnetococcus sp.
           MC-1]
 gi|117609195|gb|ABK44650.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Magnetococcus sp.
           MC-1]
          Length = 636

 Score = 60.5 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/187 (10%), Positives = 51/187 (27%), Gaps = 6/187 (3%)

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV--REY 178
            +    Q    + +     ++  +  +       +    E +I A     K +       
Sbjct: 209 EALRAYQENNRDAYSIKQRVKVRYLLLDAESVRDELKVDEAKIIAYYDDNKPLYKTLESR 268

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
            +R +L          +   QK+I+DA++            +  +  +     G+     
Sbjct: 269 KLRHILAKFKAGDATAKAAAQKKIEDAKQRIANGESFAEVAKLLSEDVTASQGGELGVFQ 328

Query: 239 E-SDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTP 294
               L  +F+       +   +    +  G   I +      G      +K  ++ Q   
Sbjct: 329 RGGGLVERFEEAAFTLPEGKVSEVVESPFGFHLILVDHIDPAGTRSFEQVKPEIAEQLFQ 388

Query: 295 TKIEKHE 301
               +  
Sbjct: 389 EGAGEAI 395


>gi|290988271|ref|XP_002676845.1| predicted protein [Naegleria gruberi]
 gi|284090449|gb|EFC44101.1| predicted protein [Naegleria gruberi]
          Length = 113

 Score = 60.1 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 8/99 (8%), Positives = 30/99 (30%), Gaps = 2/99 (2%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
           +E   R +L        +    + +    + + ++   +     E+++        G   
Sbjct: 16  KEVQARHILCEKMGKAEEVMKKL-QEGWLSRDVKVPSSEFGKLAEQYSDCSSKNKGGNLG 74

Query: 236 YLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAIC 273
           +   + +   F +          +  + T+ G   + + 
Sbjct: 75  WFGRTKMVGPFSEVAFNTPVGEVSKIFKTEHGYHIVLVE 113


>gi|307637349|gb|ADN79799.1| hypothetical protein hp908_0672 [Helicobacter pylori 908]
 gi|325995941|gb|ADZ51346.1| hypothetical protein hp2018_0650 [Helicobacter pylori 2018]
 gi|325997535|gb|ADZ49743.1| hypothetical protein hp2017_0649 [Helicobacter pylori 2017]
          Length = 414

 Score = 60.1 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 85/290 (29%), Gaps = 35/290 (12%)

Query: 32  SYKSWAMSSRIR----TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKK 87
           +  +  +  ++       +NG  IT   I +       Q+ +   +  A   LI E +K 
Sbjct: 148 NATNNTLEDKVVGGISLLVNGSPITLYQIQEE------QEKSKVSKAQARDRLIAERIKN 201

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           QEIE+  I  D + ++      A+  G+  + F   L  +G     ++  L       ++
Sbjct: 202 QEIERLKIHVDDDKLDQEMAMMAQQQGMDLDHFKQMLMAEGHYKL-YRDQLKEHLEMQEL 260

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           ++N  +        E    +   K+                    ++             
Sbjct: 261 LRNILLTNVDTSS-ETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMSNPNLEVP 319

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGV 267
              +  +                       +++      Q  +   Q + T       G 
Sbjct: 320 GVSKANEKIE--------------------MKTLNPQIAQVFISHEQGSFTPVMNGGGGQ 359

Query: 268 EY---IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                I     ++       K +++ +      +K   E+ +KLR  + I
Sbjct: 360 FITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEKLRVKSRI 409


>gi|189425603|ref|YP_001952780.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi
           SZ]
 gi|189421862|gb|ACD96260.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi
           SZ]
          Length = 92

 Score = 60.1 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 8/79 (10%), Positives = 19/79 (24%), Gaps = 1/79 (1%)

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNN 256
            +      +             +  +S    +  G         +  +F + +       
Sbjct: 13  TEAECLKLKTEIEGGADFGEVAKLNSSCPSRMRGGDLGAFGPGQMVKEFDEVVFSGEIGK 72

Query: 257 TTNPYVTQKGVEYIAICDK 275
              P  TQ G   I +  +
Sbjct: 73  VLGPVRTQFGYHLIEVTKR 91


>gi|223997298|ref|XP_002288322.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975430|gb|EED93758.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 120

 Score = 60.1 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 4/72 (5%)

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ---NLLKKSQNNTTNPYVTQKGVEY 269
               +   ++++       G         +  +F       +        P  TQ G   
Sbjct: 48  NSFTSLASEYSTCPSKARGGSLGSFGPGTMVKEFDDVIFSPETKMGEVVGPVKTQFGYHL 107

Query: 270 IAICDKRDLGGE 281
           I + DKR  GG+
Sbjct: 108 I-VVDKRTGGGD 118


>gi|313636759|gb|EFS02412.1| foldase protein PrsA [Listeria seeligeri FSL S4-171]
          Length = 167

 Score = 60.1 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 45/135 (33%), Gaps = 4/135 (2%)

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLH 243
           +             + + K+ E+      K  +  +++++      + GK        + 
Sbjct: 25  WQPDITVSHILVADEAKAKEVEQKLKDGEKFADLAKEYSTDTATKDNGGKLAPFGPGKMD 84

Query: 244 PQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA-QNTPTKIEKH 300
           P F+      K++ + ++P  TQ G   I + +          K  +           ++
Sbjct: 85  PAFEKAAYALKNKGDISDPVKTQYGYHIIQMDEPATKTTFDKDKKAVKESYLQSQLTTEN 144

Query: 301 EAEYVKKLRSNAIIH 315
             + +KK   +A + 
Sbjct: 145 MQKTLKKEYKDANVK 159


>gi|237714319|ref|ZP_04544800.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D1]
 gi|229445483|gb|EEO51274.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D1]
          Length = 514

 Score = 60.1 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/290 (5%), Positives = 71/290 (24%), Gaps = 38/290 (13%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           ++   + +     +A    +   +NG  +   +          +                
Sbjct: 5   LLLGCISLFVVAVFAQEDPVLMRVNGREVLRSEFENAYRRYAERS--------------- 49

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
                          ++      +      + L  E   +             +    + 
Sbjct: 50  ---------------NARLSPKEYAALFAQSKLKVEAARAAGLDTTTVFRKQHEKCWTEL 94

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           +   ++    M     +  +    K +   + V +   R        +  + +  +    
Sbjct: 95  VESYLIDKQVMDSCARVLYQKMGLKARSGRVQVMQIFKRLPQTVTSRHLEEEKARMDSIY 154

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYV 262
           +  +           ++     +   +                       ++   + P+ 
Sbjct: 155 RVIQNQPDLNFNRLVEIYSDDKQSRWIEG-------LETTSEFEDVAFSLAKGTVSQPFF 207

Query: 263 TQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK-IEKHEAEYVKKLRSN 311
           T +G+  + + D+ +      +   L  +    + ++K  A  + +L+ +
Sbjct: 208 TPEGIHILKVIDREEAFAYEDVSGRLIERLRRKEILDKGTAAMLDRLKRS 257


>gi|107103693|ref|ZP_01367611.1| hypothetical protein PaerPA_01004764 [Pseudomonas aeruginosa PACS2]
 gi|116052218|ref|YP_788938.1| peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296387268|ref|ZP_06876767.1| peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa
           PAb1]
 gi|313109626|ref|ZP_07795572.1| peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa
           39016]
 gi|115587439|gb|ABJ13454.1| peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310882074|gb|EFQ40668.1| peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa
           39016]
          Length = 93

 Score = 60.1 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 8/80 (10%), Positives = 25/80 (31%), Gaps = 1/80 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           + +  + + +            + ++       G         +  +F  ++  +  N  
Sbjct: 14  EAKCNELKTAIEGGADFAEVAREHSTCPSGRDGGNLGSFGPGQMVREFDQVVFSAPLNVV 73

Query: 259 -NPYVTQKGVEYIAICDKRD 277
             P  TQ G   + +  ++D
Sbjct: 74  QGPVKTQFGYHLLEVTSRQD 93


>gi|323496638|ref|ZP_08101690.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Vibrio sinaloensis
           DSM 21326]
 gi|323318291|gb|EGA71250.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Vibrio sinaloensis
           DSM 21326]
          Length = 92

 Score = 60.1 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 9/75 (12%), Positives = 26/75 (34%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +++ +D  +   +  K     +K+++       G         + PQF  +    +    
Sbjct: 15  KEQAEDIIKQLKKGAKFQTLAKKYSTCPSGKRGGDLGEFKRGQMVPQFDKVCFSGETLVP 74

Query: 259 NPYVTQKGVEYIAIC 273
           +   T+ G   + + 
Sbjct: 75  HLVKTKFGWHVVKVL 89


>gi|294667019|ref|ZP_06732247.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|292603236|gb|EFF46659.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 294

 Score = 60.1 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/199 (10%), Positives = 49/199 (24%), Gaps = 12/199 (6%)

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
           + +     Q       +   A  +I    V+            +I A      +     +
Sbjct: 85  EQARREHLQDDPVVAARIRQATDAILAKAVQTRARESAQIDAAQIKAQFDAHPHDYDEVH 144

Query: 179 LIRTVLFSIPDNKLQ-----NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIG 232
           L    +   P    +            R +  ++             + +         G
Sbjct: 145 LSHLFVALKPQGAARRGTPLTDAQALARAQRLKQQLESGTPFAELAMRQSDDASTAAEGG 204

Query: 233 KA-QYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ 291
           +     L +        +   +    + P    +G   I +  +R    + A       Q
Sbjct: 205 ELSPMFLRNVADAFVAPVQDLAVGQVSAPVRGAEGYHLIRVDARRPATLDSA-----RGQ 259

Query: 292 NTPTKIEKHEAEYVKKLRS 310
                 ++  A  +++LR 
Sbjct: 260 IEVQLRDQAAANALEQLRQ 278


>gi|294626443|ref|ZP_06705043.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292599242|gb|EFF43379.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
          Length = 294

 Score = 60.1 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/199 (10%), Positives = 49/199 (24%), Gaps = 12/199 (6%)

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
           + +     Q       +   A  +I    V+            +I A      +     +
Sbjct: 85  EQARREHLQDDPVVAARIRQATDAILAKAVQTRARESAQIDAAQIKAQFDAHPHDYDEVH 144

Query: 179 LIRTVLFSIPDNKLQ-----NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIG 232
           L    +   P    +            R +  ++             + +         G
Sbjct: 145 LSHLFVALKPQGAARRGTPLTDAQALARAQRLKQQLESGTPFAELAMRQSDDASTAAEGG 204

Query: 233 KA-QYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ 291
           +     L +        +   +    + P    +G   I +  +R    + A       Q
Sbjct: 205 ELSPMFLRNVADAFVAPVQDLAVGQVSAPVRGAEGYHLIRVDARRPATLDSA-----RGQ 259

Query: 292 NTPTKIEKHEAEYVKKLRS 310
                 ++  A  +++LR 
Sbjct: 260 IEVQLRDQAAANALEQLRQ 278


>gi|297621734|ref|YP_003709871.1| hypothetical protein wcw_1516 [Waddlia chondrophila WSU 86-1044]
 gi|297377035|gb|ADI38865.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044]
          Length = 349

 Score = 60.1 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/326 (12%), Positives = 102/326 (31%), Gaps = 32/326 (9%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAM-----SSRIRTTINGEVITDGDISKRIALLK 64
           S F+ L+   F+L     V   S           ++RI   ING+ I+  D+ K++ +  
Sbjct: 4   SIFLTLVAALFMLGQLAAVSANSMFLAQPKHIFVNNRILAKINGQPISVIDVMKQMDMFF 63

Query: 65  LQKINGELE-------------KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
            ++                   K A+++LI + L K + ++  +      V         
Sbjct: 64  YRQFPQYANSPEARYQFYNMSWKRALEDLIDKELIKADAKEVNLPMTHGEVRQEIENIFG 123

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
              ++  D +    ++               +    V +  +       + +   K   +
Sbjct: 124 PNIIANLDKAGLTYEEAFDLTKEDILFKKMMMAR--VNSIVLRSITPQMV-VDHYKTWAE 180

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
             +  E  I  V+     +   +            +  + L +  + L     +    S+
Sbjct: 181 QNSQPEKWIYQVISVRGGSNEASSTIANTVHHLLRDKDVELSQLKSLL--HPDEFKLCSV 238

Query: 232 GKAQYLLESDLHPQFQNL-LKKSQNNTTNPY-------VTQ-KGVEYIAICDKRDLGGEI 282
            +   L  S++   ++ +         + P         T    + Y+   +K       
Sbjct: 239 SQEYSLSPSEISDSYREILSLLKPGAFSEPIAQKSRASKTDVYRIFYLKEIEKGGAPSFY 298

Query: 283 ALKAYLSAQNTPTKIEKHEAEYVKKL 308
            ++  L  Q    ++   +A+Y+ +L
Sbjct: 299 EIQNRLRDQLVEKEMATEQAKYLSRL 324


>gi|323354333|gb|EGA86173.1| Ess1p [Saccharomyces cerevisiae VL3]
          Length = 190

 Score = 60.1 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/193 (7%), Positives = 45/193 (23%), Gaps = 12/193 (6%)

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           LI    + +    + +  D  +              S +    F  +         +   
Sbjct: 6   LIPTHNRLRHHNDAPMPSDVASSTGLPTPWTVRYSKSKKREYFFNPETKHSQWEEPEGTN 65

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
              +   +  +    +   L + I                  +          Q+     
Sbjct: 66  KDQLHKHLRDHPV--RVRCLHILIKH---------KDSRRPASHRSENITISKQDATDEL 114

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT 258
           K +    +   +        ++ +        G   +    ++ P F++   +      +
Sbjct: 115 KTLITRLDDDSKTNSFEALAKERSDCSSYKRGGDLGWFGRGEMQPSFEDAAFQLKVGEVS 174

Query: 259 NPYVTQKGVEYIA 271
           +   +  GV  I 
Sbjct: 175 DIXESGSGVHVIK 187


>gi|239906715|ref|YP_002953456.1| hypothetical protein DMR_20790 [Desulfovibrio magneticus RS-1]
 gi|239796581|dbj|BAH75570.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 597

 Score = 60.1 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/308 (13%), Positives = 98/308 (31%), Gaps = 39/308 (12%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
             ++         +  A    +   +NG  I   ++  R  + ++ +    ++  AV++L
Sbjct: 13  AALVLSFCLWGCGRDTADEPGVVAVVNGSPIRLAELEMRNDVSRISQP--AVDNPAVEDL 70

Query: 81  -----------IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
                      +V  L  QE+++ G       +     + A       E F   L ++ I
Sbjct: 71  RAGLGAALADAVVARLVGQELKRLGQAPTPEELEKA--EAAVRADYPGEAFERMLLEEHI 128

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
               +++ LA +       ++  +        E  A  ++ +    R  ++   + S  D
Sbjct: 129 DLARWREMLADRLALEKFRQDVLLPGQRVGVSEAAAYYKEHQAAFARPAMVTLRVVSGRD 188

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
            +         R                      S   + S+G+   + E+ L   +++ 
Sbjct: 189 AEAVKAALAAARK---------------------SGQGEASLGREAVMPEAGLPQAWRDA 227

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK--AYLSAQNTPTKIEKHEAEYVK 306
              K     T P    +    + + ++         K  A + A+ T  K+ K    ++ 
Sbjct: 228 LRGKKPGEATPPLAMGREHVALVLVERTPAAMPDPAKAYARVEARLTEEKLTKAFDAWLA 287

Query: 307 KLRSNAII 314
           K    A I
Sbjct: 288 KALGQATI 295


>gi|262408152|ref|ZP_06084699.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_22]
 gi|294645122|ref|ZP_06722847.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|294809726|ref|ZP_06768413.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
 gi|262353704|gb|EEZ02797.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_22]
 gi|292639546|gb|EFF57839.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|294443060|gb|EFG11840.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 515

 Score = 60.1 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/290 (5%), Positives = 71/290 (24%), Gaps = 38/290 (13%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           ++   + +     +A    +   +NG  +   +          +                
Sbjct: 6   LLLGCISLFVVAVFAQEDPVLMRVNGREVLRSEFENAYRRYAERS--------------- 50

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
                          ++      +      + L  E   +             +    + 
Sbjct: 51  ---------------NARLSPKEYAALFAQSKLKVEAARAAGLDTTTVFRKQHEKCWTEL 95

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           +   ++    M     +  +    K +   + V +   R        +  + +  +    
Sbjct: 96  VESYLIDKQVMDSCARVLYQKMGLKARSGRVQVMQIFKRLPQTVTSRHLEEEKARMDSIY 155

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYV 262
           +  +           ++     +   +                       ++   + P+ 
Sbjct: 156 RVIQNQPDLNFNRLVEIYSDDKQSRWIEG-------LETTSEFEDVAFSLAKGTVSQPFF 208

Query: 263 TQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK-IEKHEAEYVKKLRSN 311
           T +G+  + + D+ +      +   L  +    + ++K  A  + +L+ +
Sbjct: 209 TPEGIHILKVIDREEAFAYEDVSGRLIERLRRKEILDKGTAAMLDRLKRS 258


>gi|152983709|ref|YP_001346304.1| peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa PA7]
 gi|150958867|gb|ABR80892.1| peptidyl-prolyl cis-trans isomerase C2 [Pseudomonas aeruginosa PA7]
          Length = 93

 Score = 60.1 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 8/80 (10%), Positives = 25/80 (31%), Gaps = 1/80 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           + +  + + +            + ++       G         +  +F  ++  +  N  
Sbjct: 14  EAKCNELKTAIEGGADFAEIARQHSTCPSGRDGGNLGSFGPGQMVREFDQVVFSAPLNVV 73

Query: 259 -NPYVTQKGVEYIAICDKRD 277
             P  TQ G   + +  ++D
Sbjct: 74  QGPVKTQFGYHLLEVTSRQD 93


>gi|217032492|ref|ZP_03437984.1| hypothetical protein HPB128_156g22 [Helicobacter pylori B128]
 gi|298736357|ref|YP_003728883.1| hypothetical protein HPB8_862 [Helicobacter pylori B8]
 gi|216945838|gb|EEC24459.1| hypothetical protein HPB128_156g22 [Helicobacter pylori B128]
 gi|298355547|emb|CBI66419.1| conserved hypothetical protein [Helicobacter pylori B8]
          Length = 408

 Score = 60.1 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 83/288 (28%), Gaps = 35/288 (12%)

Query: 34  KSWAMSSRIR----TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
               +  ++       +NG  IT   I +       Q+ +   +  A   LI E +K QE
Sbjct: 144 AGNTLEDKVVGGISLLVNGSPITLYQIQEE------QEKSKVSKAQARDRLIAERIKNQE 197

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
           IE+  I  D + ++      A+  G+  + F   L  +G     ++  L       ++++
Sbjct: 198 IERLKIHVDDDKLDQEMAMMAQQQGMDLDHFKQMLMAEGHYKL-YRDQLKEHLEMQELLR 256

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
           N  +        E    +   K+                    ++               
Sbjct: 257 NILLTNVDTSS-ETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMADPNLEIPGV 315

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY 269
            +  +                       +++      Q  +   Q + T       G   
Sbjct: 316 SKANEKIE--------------------MKTLNPQIAQVFISHEQGSFTPVMNGGGGQFI 355

Query: 270 ---IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              I     ++       K +++ +      +K   E+ +KLR  + I
Sbjct: 356 TFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEKLRVKSRI 403


>gi|317177476|dbj|BAJ55265.1| hypothetical protein HPF16_0668 [Helicobacter pylori F16]
          Length = 419

 Score = 60.1 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 89/289 (30%), Gaps = 37/289 (12%)

Query: 34  KSWAMSSRIR----TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
               +  ++       +NG  IT   I +       Q+ +   +  A   LI E +K QE
Sbjct: 155 AGSTLEDKVVGGISLLVNGSPITLYQIQEE------QEKSKVSKAQARDRLIAERIKNQE 208

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
           IE+  I  D + ++      A+  G+  + F   L  +G     ++  L       ++++
Sbjct: 209 IERLKIHVDDDKLDQEMAMMAQQQGMDLDHFKQMLMAEGHYKL-YRDQLKEHLEMQELLR 267

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
           N  +                              +         NQ  +++ + +     
Sbjct: 268 NILLTNVDTSSETKMREYYNKHKEQFSIPTEIETVRY----TSTNQEDLERAMSNPNLEV 323

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKG--- 266
             + K   K                  +    L+PQ   +    +  +  P +   G   
Sbjct: 324 PGVSKANEK------------------IEMKTLNPQIAQVFISHEQGSFTPIMNGGGGQF 365

Query: 267 -VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              YI     ++       K +++ +      +K   E+ +KLR  + I
Sbjct: 366 ITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEKLRVKSRI 414


>gi|283850615|ref|ZP_06367902.1| hypothetical protein DFW101DRAFT_0472 [Desulfovibrio sp. FW1012B]
 gi|283573858|gb|EFC21831.1| hypothetical protein DFW101DRAFT_0472 [Desulfovibrio sp. FW1012B]
          Length = 520

 Score = 60.1 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/296 (11%), Positives = 87/296 (29%), Gaps = 25/296 (8%)

Query: 31  VSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN------GELEKI---AVQELI 81
              +  A    +   +NG  I   D+  R  L +L           +L       + ++I
Sbjct: 26  GCKQDAAREPGVVAVVNGAPIRLPDLEARHGLGRLGAPEAGNPAVEQLRAEYGAVLADMI 85

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
           V  L +QE+ + G+      V     Q   +        +    ++ + +         +
Sbjct: 86  VARLVRQELARLGLAVTPAEVEAAEAQVRADYATGDSGDAF---ERMLLEERIDLGRWRE 142

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
            +   +    F  +       +  ++                       +       + R
Sbjct: 143 VLGDRLALAKFSREVLRQNARVDVSEAAAYYKE----------HIDAFTRPARVRLAEVR 192

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNP 260
            ++AE  +  L       +  + +  D    +   + E +L   ++  +K       +  
Sbjct: 193 GREAEAVQAALTAWRKSGQSASLESLDGITVREATVPEKNLAEPWRQAVKGLKPGEASGL 252

Query: 261 YVTQKGVEYIAICDKRDLGGEIALK--AYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                   ++ +  +         K  A + A+    K+EK  A ++ +  + A I
Sbjct: 253 LGADTETWFLVVLSREPATVFDPAKAYARVEAELGARKLEKTFAAWLAEALAGARI 308


>gi|188527492|ref|YP_001910179.1| hypothetical protein HPSH_03560 [Helicobacter pylori Shi470]
 gi|188143732|gb|ACD48149.1| hypothetical protein HPSH_03560 [Helicobacter pylori Shi470]
          Length = 426

 Score = 60.1 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 83/288 (28%), Gaps = 35/288 (12%)

Query: 34  KSWAMSSRIR----TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
               +  ++       +NG  IT   I +       Q+ +   +  A   LI E +K QE
Sbjct: 162 AGSTLEDKVVGGISLLVNGSPITLYQIQEE------QEKSKVSKAQARDRLIAERIKNQE 215

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
           IE+  I  D + ++      A+  G+  + F   L  +G     ++  L       ++++
Sbjct: 216 IERLKIHVDDDKLDQEMAMMAQQQGMDLDHFKQMLMAEGHYKL-YRDQLKEHLEMQELLR 274

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
           N  +        E    +   K+                    ++               
Sbjct: 275 NILLTNVDTSS-ETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMADHNLEIPGV 333

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY 269
            +  +                       +++      Q  +   Q + T       G   
Sbjct: 334 SKANEKIE--------------------MKTLNPQIAQVFISHEQGSFTPVMNGGGGQFI 373

Query: 270 ---IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              I     ++       K +++ +      +K   E+ +KLR  + I
Sbjct: 374 TFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEKLRVKSRI 421


>gi|261838101|gb|ACX97867.1| hypothetical protein KHP_0662 [Helicobacter pylori 51]
          Length = 411

 Score = 60.1 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 83/288 (28%), Gaps = 35/288 (12%)

Query: 34  KSWAMSSRIR----TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
               +  ++       +NG  IT   I +       Q+ +   +  A   LI E +K QE
Sbjct: 147 AGSTLEDKVVGGISLLVNGSPITLYQIQEE------QEKSKVSKAQARDRLIAERIKNQE 200

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
           IE+  I  D + ++      A+  G+  + F   L  +G     ++  L       ++++
Sbjct: 201 IERLKIHVDDDKLDQEMAMMAQQQGMDLDHFKQMLMAEGHYKL-YRDQLKEHLEMQELLR 259

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
           N  +        E    +   K+                    ++               
Sbjct: 260 NILLTNVDTSS-ETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMADPNLEIPGV 318

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY 269
            +  +                       +++      Q  +   Q + T       G   
Sbjct: 319 SKANEKIE--------------------MKTLNPQIAQVFISHEQGSFTPVMNGGGGQFI 358

Query: 270 ---IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              I     ++       K +++ +      +K   E+ +KLR  + I
Sbjct: 359 TFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEKLRVKSRI 406


>gi|15645283|ref|NP_207453.1| hypothetical protein HP0659 [Helicobacter pylori 26695]
 gi|2313789|gb|AAD07729.1| predicted coding region HP0659 [Helicobacter pylori 26695]
          Length = 414

 Score = 60.1 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 84/288 (29%), Gaps = 35/288 (12%)

Query: 34  KSWAMSSRIR----TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
            +  +  ++       +NG  IT   I +       Q+ +   +  A   LI E +K QE
Sbjct: 150 ANNTLEDKVVGGISLLVNGSPITLYQIQEE------QEKSKVSKAQARDRLIAERIKNQE 203

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
           IE+  I  D + ++      A+  G+  + F   L  +G     ++  L       ++++
Sbjct: 204 IERLKIHVDDDKLDQEMAMMAQQQGMDLDHFKQMLMAEGHYKL-YRDQLKEHLEMQELLR 262

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
           N  +        E    +   K+                    ++               
Sbjct: 263 NILLTNVDTSS-ETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMADPNLEIPGV 321

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY 269
            +  +                       +++      Q  +   Q + T       G   
Sbjct: 322 SKANEKIE--------------------MKTLNPQIAQVFISHEQGSFTPVMNGGGGQFI 361

Query: 270 ---IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              I     ++       K +++ +      +K   E+ +KLR  + I
Sbjct: 362 TFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEKLRVKSRI 409


>gi|255067897|ref|ZP_05319752.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria sicca ATCC
           29256]
 gi|255047885|gb|EET43349.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria sicca ATCC
           29256]
          Length = 616

 Score = 60.1 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 77/262 (29%), Gaps = 7/262 (2%)

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            + +A ++ +     L  +     I+   + +++ K            F  +   +    
Sbjct: 131 DQFVADIRERYALQSLINLVQNGAIISDAQAEQLIKLTQATRDIRSVTFNPEAFVSQVKV 190

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            +       +    D    Q + ++ I   +   D   K    E E+     +       
Sbjct: 191 DDAALKAYYEAHKKDYLIPQGVKLEYI--ALSAKDLADKQAVSEDEVKKAFDEQAPHLSP 248

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP--KDCNKLEKFASK-IHDVSIGK 233
              I  + F +P +  +      K   D   + L+       +  +K++         G 
Sbjct: 249 RREIAHIFFPVPQDADETVRAAIKAEADKVAAELKAKPADFADLAKKYSKDTASASKGGN 308

Query: 234 AQYLLE-SDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ 291
             YL +   L    +N+     +   ++   T  G + + + +  D       KA + A 
Sbjct: 309 LGYLSKDGGLGTDLENVAFSLPKGGISDVVQTPVGYDIVQVLNIEDKVSLEHEKARIEAD 368

Query: 292 NTPTKIEKHEAEYVKKLRSNAI 313
               K         +KL   A 
Sbjct: 369 LKLKKAASEFNSVKEKLSEEAF 390


>gi|332284237|ref|YP_004416148.1| peptidyl-prolyl cis-trans isomerase D [Pusillimonas sp. T7-7]
 gi|330428190|gb|AEC19524.1| peptidyl-prolyl cis-trans isomerase D [Pusillimonas sp. T7-7]
          Length = 655

 Score = 60.1 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/198 (10%), Positives = 58/198 (29%), Gaps = 6/198 (3%)

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
             D   + +K        +Q  A   +  +      + +  + +++    + K + +   
Sbjct: 208 DADIQDWYEKNKQSLELPEQLSAQYLLLNEEAAMANLPQISDEDLQKYYEQNKARYVQPA 267

Query: 177 EYLIRTVLFSIPDNKLQNQ--GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGK 233
              +  +  +IP +  + Q    + K    A+ ++          +  +         GK
Sbjct: 268 RVNVSHIQINIPADASEAQRSEALAKAQDIAKRAQADAAAFAELAQNESQDAGTAKEGGK 327

Query: 234 AQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSA 290
             ++ +     Q + ++        ++      G       +            KA + A
Sbjct: 328 LGWITKGSWPAQLEQVVFALKAGQVSDAVEGPGGYHVFLANEVQAEKGESFEEAKAKVQA 387

Query: 291 QNTPTKIEKHEAEYVKKL 308
           + +        A+   KL
Sbjct: 388 EVSRQLGADRYADMATKL 405



 Score = 52.4 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/262 (10%), Positives = 72/262 (27%), Gaps = 16/262 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T     ++L+    +L  F ++ +  Y ++        T+    IT  D  +  
Sbjct: 1   MFDFIRTH-QRLMQLVLLVLILPSFVLIGVSGYTNYVSGDHDIVTLGDTSITQQDFDQAR 59

Query: 61  -------------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
                        A       +       ++ LI  T+  +   K   +   + +     
Sbjct: 60  RNQLQQLQQSSQGAFDPAILDSPAARSALLESLIDRTVLVETATKERFSVSDSVLRQTIA 119

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
              +           + D         + +   Q    ++     +              
Sbjct: 120 SMPQLQVDGQFSAERYNDVLASAGLTTRDFEQSQ--RGELALGRVLGPVTMTASVPSVVI 177

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
            K+K     +  IR + F   + + + Q          E+++  L        ++     
Sbjct: 178 DKLKLALTEQRTIRLLAFPAAEQEKEVQITDADIQDWYEKNKQSLELPEQLSAQYLLLNE 237

Query: 228 DVSIGKAQYLLESDLHPQFQNL 249
           + ++     + + DL   ++  
Sbjct: 238 EAAMANLPQISDEDLQKYYEQN 259


>gi|254507147|ref|ZP_05119284.1| peptidyl-prolyl cis-trans isomerase C [Vibrio parahaemolyticus 16]
 gi|219549857|gb|EED26845.1| peptidyl-prolyl cis-trans isomerase C [Vibrio parahaemolyticus 16]
          Length = 92

 Score = 60.1 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 9/75 (12%), Positives = 26/75 (34%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +++ +D  +   +  K     +K+++       G         + PQF  +    +    
Sbjct: 15  KEQAEDIIKQLKKGAKFQTLAKKYSTCPSGKKGGDLGEFRRGQMVPQFDKVCFSGETLVP 74

Query: 259 NPYVTQKGVEYIAIC 273
           +   T+ G   + + 
Sbjct: 75  HLVKTKFGWHVVKVL 89


>gi|303257438|ref|ZP_07343451.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase
           [Burkholderiales bacterium 1_1_47]
 gi|302859795|gb|EFL82873.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase
           [Burkholderiales bacterium 1_1_47]
          Length = 261

 Score = 60.1 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/295 (9%), Positives = 86/295 (29%), Gaps = 49/295 (16%)

Query: 26  CIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ--KINGELEKIAVQELIVE 83
            +   ++    A  ++   T+NG+ ++  +  + +  L+        +LE  A   L+ +
Sbjct: 1   MLAAALAGVLPAAVAQTAFTVNGQFVSVEEQKQLMDFLRANGVTNEKQLENAARSILLEQ 60

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            + +Q     G+  D         + A+                               +
Sbjct: 61  KIIEQAARNEGLLEDPRVRVLISEKQAQ-------------------------------L 89

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
           +  ++   +  ++   E ++      + +      +    +      + +      K   
Sbjct: 90  YGSILSRRYASEHPITEEQVRNRYDSLLSSYDPHEIKFRHILVKTPEEAREIIQSLKV-- 147

Query: 204 DAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYLL-ESDLHPQFQNLLKKSQNN--TTN 259
                        +  ++ +       + G+  +    + L P     +   Q       
Sbjct: 148 --------GSDFGSLAKERSLDQSTSQNGGQIPFTNIRNVLVPGLAEAILALQPGDLLPV 199

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           P+ ++ G   + + +KR++         +  +           E++  L+ +A I
Sbjct: 200 PFKSKLGYHVVLLEEKREVP--FPSYEEVKPKVLSELERLQTTEFLNDLQKDAKI 252


>gi|24115070|ref|NP_709580.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Shigella
           flexneri 2a str. 301]
 gi|30064928|ref|NP_839099.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Shigella
           flexneri 2a str. 2457T]
 gi|110807533|ref|YP_691053.1| peptidyl-prolyl cis-trans isomerase C [Shigella flexneri 5 str.
           8401]
 gi|24054335|gb|AAN45287.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Shigella
           flexneri 2a str. 301]
 gi|30043189|gb|AAP18910.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Shigella
           flexneri 2a str. 2457T]
 gi|110617081|gb|ABF05748.1| peptidyl-prolyl cis-trans isomerase C [Shigella flexneri 5 str.
           8401]
 gi|281603167|gb|ADA76151.1| Peptidyl-prolyl cis-trans isomerase C [Shigella flexneri 2002017]
 gi|313647778|gb|EFS12225.1| peptidyl-prolyl cis-trans isomerase C [Shigella flexneri 2a str.
           2457T]
 gi|332750998|gb|EGJ81403.1| peptidyl-prolyl cis-trans isomerase C [Shigella flexneri 4343-70]
 gi|332751087|gb|EGJ81491.1| peptidyl-prolyl cis-trans isomerase C [Shigella flexneri K-671]
 gi|332751921|gb|EGJ82316.1| peptidyl-prolyl cis-trans isomerase C [Shigella flexneri 2747-71]
 gi|332764381|gb|EGJ94616.1| PPIC-type PPIASE domain protein [Shigella flexneri 2930-71]
 gi|332996860|gb|EGK16480.1| peptidyl-prolyl cis-trans isomerase C [Shigella flexneri VA-6]
 gi|332997909|gb|EGK17516.1| peptidyl-prolyl cis-trans isomerase C [Shigella flexneri K-218]
 gi|332998281|gb|EGK17883.1| peptidyl-prolyl cis-trans isomerase C [Shigella flexneri K-272]
 gi|333013578|gb|EGK32945.1| peptidyl-prolyl cis-trans isomerase C [Shigella flexneri K-304]
 gi|333013820|gb|EGK33183.1| peptidyl-prolyl cis-trans isomerase C [Shigella flexneri K-227]
          Length = 93

 Score = 60.1 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 20/78 (25%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +K   D               +K +        G      +  + P F + +      
Sbjct: 13  KEEKLALDLLVQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVL 72

Query: 256 NTTNPYVTQKGVEYIAIC 273
             T P  TQ G   I + 
Sbjct: 73  EPTGPLHTQFGYHIIKVL 90


>gi|118602656|ref|YP_903871.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567595|gb|ABL02400.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 615

 Score = 60.1 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/254 (11%), Positives = 72/254 (28%), Gaps = 14/254 (5%)

Query: 60  IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
           I    ++       +I    L    +   E+ K     D      +   HA +     + 
Sbjct: 145 IKYEAIKLQELTETQIKYNLLDSAFVIPTELAKLQKLNDQQRQFSYIAIHADDYVKEVKV 204

Query: 120 FSSFLDKQGIGDNHFKQY-LAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
               +                ++  + ++  N         + E+    +  +    RE 
Sbjct: 205 DVQSVKNFYNNKKALFFAPEQVKIEFVELSLNKISKNIKVSDDELFNFYKDEQERFTREE 264

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYL 237
             +     + D             +          K     E+++       + G   + 
Sbjct: 265 ERQAQHILLEDKSTA---------QKVIALLNNGGKFAKLAEQYSQDTASKANAGDLGFF 315

Query: 238 LESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTP 294
               + P+F+  +     N  ++   ++ G   I + +   + L    A+K+ L    T 
Sbjct: 316 TRGVMLPEFEKKVFAMKLNEVSDLVKSEFGYHIIKLNNIKVKTLKPFDAVKSELLDLYTQ 375

Query: 295 TKIEKHEAEYVKKL 308
           T+ +K      ++L
Sbjct: 376 TQAQKVFYSLTEQL 389



 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 70/226 (30%), Gaps = 12/226 (5%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +      ++  L    + I F +  I  Y    +S+ +  +++G  I+  +   + 
Sbjct: 1   MLGSIRNKTKGWVAYLIVGLITIPFVLFGISEYF-TGVSNIVIASVDGVDISKAEFLAKF 59

Query: 61  ALLKLQKING-----------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
              K +                L++  + ++I + L +Q   +      +N +N     +
Sbjct: 60  NPQKRRLQQELDKKYDTEFDAMLKQSILNQMIDKYLLEQLSNELSYETTANELNTIIQAN 119

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
                        +     +      +Y AI+       +  + L      +     K +
Sbjct: 120 NLFKKKGRFSLEKYKQLLRLNGYTTIKYEAIKLQELTETQIKYNLLDSAFVIPTELAKLQ 179

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
             N   R++    +       +++      K   + +++    P+ 
Sbjct: 180 KLNDQQRQFSYIAIHADDYVKEVKVDVQSVKNFYNNKKALFFAPEQ 225


>gi|71282523|ref|YP_267498.1| peptidyl-prolyl cis-trans isomerase C [Colwellia psychrerythraea
           34H]
 gi|71148263|gb|AAZ28736.1| peptidyl-prolyl cis-trans isomerase C [Colwellia psychrerythraea
           34H]
          Length = 92

 Score = 60.1 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 26/75 (34%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           ++  +D  E   +  K     +K++S       G         + PQF  +  K     +
Sbjct: 15  KEIAEDIIEQLGKGAKFQTLAKKYSSCPSGKKGGDLGEFKRGQMVPQFDKIAFKGALLES 74

Query: 259 NPYVTQKGVEYIAIC 273
           +   T+ G   I + 
Sbjct: 75  HLVKTKFGWHVIKVL 89


>gi|328953890|ref|YP_004371224.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454214|gb|AEB10043.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 629

 Score = 59.7 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/264 (10%), Positives = 67/264 (25%), Gaps = 13/264 (4%)

Query: 61  ALLKLQKINGELEKIAVQE----LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
             L   +   +  +  + +     I    K  E +                     +   
Sbjct: 141 RRLPASEYEEQERQQLLVQKMVHFITSFAKISEADLQEAYRLQQETVRVEYVVLGPSQFL 200

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML---KYGNLEMEIPANKQKMKNI 173
            E  +   + Q   ++H + +   + +    +   F     +      +I          
Sbjct: 201 KEQQAGAAEMQQYYESHPETFREPEKVKVRYIFFKFNDFDGQIKADREKIETYYYDHLED 260

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI-- 231
             R   IR     +           Q+    AE+   R     +  +       +     
Sbjct: 261 YSRPQTIRVSQLFLEPPSKAGTAEQQRFRLLAEKLLQRARAGESFEQLQKKYSPEAEGRI 320

Query: 232 --GKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK--RDLGGEIALKAY 287
             G+   +      P+++ +    +        T +G   I + D   R       ++A 
Sbjct: 321 QAGELGLVKRGQNIPEWEAVAFHLKKGGIGMAKTPRGYYLIKVNDILERKTPPLAEVQAQ 380

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSN 311
           +       + +K      + LR+ 
Sbjct: 381 VEKSWRAEEAKKLAHRQAEGLRAE 404



 Score = 55.8 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 69/237 (29%), Gaps = 19/237 (8%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +    S +        ++++F +  I S++S          ++G  I   +  K  
Sbjct: 1   MLDFMRKHASSWFVTGIIGAIVVVFVLWGIGSFRSAQFQE--VAEVDGAKIYLPEYYKAY 58

Query: 61  ALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
             L                     L + A+ ++I E L KQ   + G+      +  +  
Sbjct: 59  QNLVRNYQEQMGGESNEEVAKTLRLREQALGQMIDELLIKQASNRLGLNVTDAELRDYIR 118

Query: 108 Q---HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF-MLKYGNLEMEI 163
           +    A   G + + +   L ++ +  + +++    Q +   +V       K    +++ 
Sbjct: 119 RNPAFADERGFNEKRYHQLLARRRLPASEYEEQERQQLLVQKMVHFITSFAKISEADLQE 178

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
               Q+         L  +                 +   +      ++       +
Sbjct: 179 AYRLQQETVRVEYVVLGPSQFLKEQQAGAAEMQQYYESHPETFREPEKVKVRYIFFK 235


>gi|118580921|ref|YP_902171.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter
           propionicus DSM 2379]
 gi|118503631|gb|ABL00114.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter
           propionicus DSM 2379]
          Length = 93

 Score = 59.7 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 6/79 (7%), Positives = 19/79 (24%), Gaps = 1/79 (1%)

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNN 256
            ++     ++               +        G+        +  +F + +       
Sbjct: 13  TEEACLKLKQEIEAGADFAACARDHSLCPSSRQGGELGEFGPGQMVKEFDEVVFSAEVGT 72

Query: 257 TTNPYVTQKGVEYIAICDK 275
              P  TQ G   + +  +
Sbjct: 73  VQGPVKTQFGYHLVEVTRR 91


>gi|187251883|ref|YP_001876365.1| hypothetical protein Emin_1480 [Elusimicrobium minutum Pei191]
 gi|186972043|gb|ACC99028.1| hypothetical protein Emin_1480 [Elusimicrobium minutum Pei191]
          Length = 286

 Score = 59.7 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/312 (11%), Positives = 88/312 (28%), Gaps = 41/312 (13%)

Query: 15  LLTTYFVLIIFCIVPIVSY----KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING 70
           +     + ++  ++          + A  S     + G  IT  D    +    L +   
Sbjct: 1   MRRIVIISVLAALLSAGCKEEKPAAKAHPSNALANVGGVFITQKDFDNAVIDETLNRKYL 60

Query: 71  EL---EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
           E    +   +  L+ E L +Q   KSG               +  +    +  +   +  
Sbjct: 61  ETSFGKNALINALVREQLIQQASLKSG---------------SAQSEEFIKTITDIQNDF 105

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
                  K+ +A +     +       +    E EI    +K         ++       
Sbjct: 106 SKRLEETKKEVATKIWIDSLRNK---GEISVTEDEIKDYHKKYSYEMTIRQMLL------ 156

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS--IGKAQYLLESDLHPQ 245
                 +   +  R   A  +  R  +     ++++  + DVS    +  ++    L   
Sbjct: 157 ---TDPDTANLVLRELKATNNSNREKRFIELAKRYSIDLDDVSTDGKQFTFMPGEFLPEI 213

Query: 246 FQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYV 305
                  S       + T +G   I    ++ +  +   +  +       K +    +Y+
Sbjct: 214 ENASANSSSGLVQGFFKTSRGFHIIYKAGEKKITLK-DARDRIKNILEKKKFD----DYL 268

Query: 306 KKLRSNAIIHYY 317
           + L     +  Y
Sbjct: 269 ESLAVKYKVEVY 280


>gi|254456744|ref|ZP_05070172.1| conserved hypothetical protein [Campylobacterales bacterium GD 1]
 gi|207085536|gb|EDZ62820.1| conserved hypothetical protein [Campylobacterales bacterium GD 1]
          Length = 278

 Score = 59.7 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 79/289 (27%), Gaps = 23/289 (7%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVE 83
           IF  + +    S  +   I   + G  IT  DI K + L K+        K A   LI +
Sbjct: 4   IFLTIMLALTLSAEIVDGIAVIVKGSAITLYDIKKEMQLSKIDA------KSATDALIRK 57

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            L+ QEI++  I+  S  V     + A    LS  +F   +       +   +    + +
Sbjct: 58  ALENQEIDERKISVSSGEVYDDIKKTAERNKLSVSEFYEAVRNSSGLTSEELKEKIKEKL 117

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
               + +       +   E         +     +     +        Q          
Sbjct: 118 LSQKLYSAIAYSGVSEPTEDEIEAYFKSHKDSFAHPSGFKVLIYQSTNKQKLQEKIDNPM 177

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVT 263
                     +                      L  + L+     +        +     
Sbjct: 178 FYSPDISSNEQSLPYDRISPELAS--------LLERTSLNSFTAAVPDGKGGYMS----- 224

Query: 264 QKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
                   I   ++ G +  ++  +    T  + E+   +Y  +LR NA
Sbjct: 225 ---FYIKEIESAKETGLDS-VRNQIVNMITAEQREQVLGDYFARLRHNA 269


>gi|225568647|ref|ZP_03777672.1| hypothetical protein CLOHYLEM_04725 [Clostridium hylemonae DSM
           15053]
 gi|225162575|gb|EEG75194.1| hypothetical protein CLOHYLEM_04725 [Clostridium hylemonae DSM
           15053]
          Length = 350

 Score = 59.7 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/310 (7%), Positives = 73/310 (23%), Gaps = 16/310 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K     F +       +++       + +  T+  + IT  D++   A     +     
Sbjct: 1   MKKRVLLFAITGLLAAGVLTGCGSIDENDVVATVGEKEIT-ADVANFFARYTQAQYETYY 59

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA-----EDFSSFLDKQ 127
                 ++      + E  +  +           +    + G        E+ +      
Sbjct: 60  SGYLGDDMWNTDASEGETYEEFVKDSVLNELEKMIVLEEHMGDYDVSLTEEEKAVIEKSA 119

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI------TVREYLIR 181
              D         +           +      +    A +              +     
Sbjct: 120 KAFDEANTLESKEKISGSRKTVKRVLTLMAVQKKMAEAIEAGADTEVSDDEAAQKSMQYV 179

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI-GKAQYLLES 240
              +   D+  ++     +   +A++      +     + F++   +  +  +       
Sbjct: 180 LFPYKTTDDSGKSSDLSDEEKAEAKKKAGSFAEGAGTADDFSALATEQGVEAQTATFDSE 239

Query: 241 DLHPQ---FQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
              P     +      +   T    T  G     +    D     + K  +  +      
Sbjct: 240 STSPAEDVVKAADALGEGEVTGVIETDSGCYVAKVTSLLDREATDSKKESIVQERKTKLY 299

Query: 298 EKHEAEYVKK 307
                +++KK
Sbjct: 300 NDTCDKWIKK 309


>gi|290508670|ref|ZP_06548041.1| nitrogen fixation protein NifM [Klebsiella sp. 1_1_55]
 gi|289778064|gb|EFD86061.1| nitrogen fixation protein NifM [Klebsiella sp. 1_1_55]
          Length = 266

 Score = 59.7 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 10/163 (6%), Positives = 41/163 (25%), Gaps = 3/163 (1%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
              +    +                    R     +      +Q    +  +   +    
Sbjct: 98  IASQAPRPDPATVQAWYLRHQAQFMRPEQRLTRHLLLTVDGDDQAVYSRIRELHGQIEAS 157

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYI 270
                   ++ +     +  G+  ++    L     + L   ++N  + P  ++ G   +
Sbjct: 158 REAFAPLAQRHSHCPSALDGGRLGWIGRGLLYPQLEEALFALAENALSAPVASELGWHLV 217

Query: 271 AICDKRDLGGEIALK--AYLSAQNTPTKIEKHEAEYVKKLRSN 311
                R        +         +     +H+ +++ ++ + 
Sbjct: 218 WCEAIRPAAPMTPEQALESARDYLSQQSQRRHQRQWLAEMLAR 260


>gi|229367552|gb|ACQ58756.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Anoplopoma
           fimbria]
          Length = 156

 Score = 59.7 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 13/106 (12%), Positives = 31/106 (29%), Gaps = 1/106 (0%)

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
             +    +       R   +   +        ++   K  EE +    K  +   +F+  
Sbjct: 47  KVRCSHLLVKHTQSRRPSSWREQNITRTKDEALELIQKYIEEIKSGEEKFESLASQFSDC 106

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
               + G      +  +   F++        + + P  T+ GV  I
Sbjct: 107 SSAKNGGDLGQFGKGQMQKPFEDASFALKVGDMSGPVFTESGVHII 152


>gi|261380078|ref|ZP_05984651.1| conserved hypothetical protein [Neisseria subflava NJ9703]
 gi|284797294|gb|EFC52641.1| conserved hypothetical protein [Neisseria subflava NJ9703]
          Length = 290

 Score = 59.7 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/294 (10%), Positives = 82/294 (27%), Gaps = 15/294 (5%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVET 84
           F    +++  S  + ++   T+NG+ I    I  ++A ++    N +      Q L    
Sbjct: 6   FASALMLALTSSTLLAQTLVTVNGQAIDSSVIDDQVASVRASNPNVKDTPELRQMLTERQ 65

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
           +    + +       +    F     +    +A+  +            F+  L  Q+  
Sbjct: 66  VISTVVTQEAKKLKLDQSAEFKTALEQARADAAKQGADKKATFKTEWAVFENDLLGQAFA 125

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
             +V+          +++   N         +E  +  ++     N  +    +  +   
Sbjct: 126 AHIVRQ---NPIQEKDVKAAYNDFSNFYKGTQEVQLGEIVTDSSSNAQKAIADLDAKKS- 181

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN-PYVT 263
                 +   D    +        V +       +    P +  +    +   T  P   
Sbjct: 182 FVSVLNQYSIDEAAKKAGGIPKAYVPLKDL----QESAPPLYAAVKDLKKGAHTKTPLQN 237

Query: 264 QKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                   + D+R+  +    A K  +       +++      +      A I 
Sbjct: 238 GNLYAVFYVNDRRNVTVPSYEASKNEIGNDLQAARVDAAIQSLL----KKASIK 287


>gi|288934468|ref|YP_003438527.1| nitrogen fixation protein NifM [Klebsiella variicola At-22]
 gi|255761121|gb|ACU32721.1| nitrogen fixation protein NifM [Klebsiella variicola At-22]
          Length = 266

 Score = 59.7 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 11/163 (6%), Positives = 40/163 (24%), Gaps = 3/163 (1%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
              +    +                    R     +      +Q    +  +   +    
Sbjct: 98  IASQAPRPDPAAVQAWYLRHQAQFMRPEQRLTRHLLLTVDGDDQTVYSRIRELHGQIEAS 157

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYI 270
                   ++ +     +  G   ++    L     + L   ++N  + P  ++ G   I
Sbjct: 158 REAFAPLAQRHSHCPSALDGGLLGWIGRGLLYPQLEEALFALAENALSAPVASELGWHLI 217

Query: 271 AICDKRDLGGEIALK--AYLSAQNTPTKIEKHEAEYVKKLRSN 311
                R        +         +     +H+ +++ ++ + 
Sbjct: 218 WCEAIRPAAPMTPEQALESARDYLSQQSQRRHQRQWLAEMLAR 260


>gi|288575825|ref|ZP_05977675.2| conserved hypothetical protein [Neisseria mucosa ATCC 25996]
 gi|288566815|gb|EFC88375.1| conserved hypothetical protein [Neisseria mucosa ATCC 25996]
          Length = 298

 Score = 59.7 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/292 (10%), Positives = 75/292 (25%), Gaps = 11/292 (3%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVET 84
           F    +++  S ++ ++   T+NG+ I    I  ++A L+ +    +      QEL    
Sbjct: 14  FTAALVMAALSGSLFAQTLVTVNGQAIDSSVIDGQVAALRAENKQIQDSPQLRQELTNRQ 73

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
           +    I +       +          +    +  D       +               + 
Sbjct: 74  VISTVIAQEAKRRKLDQSAE----FKKALEQARADAKKQGADKKPSFKTEWAAFEDDLLG 129

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
             +  +       N +    +  +  K     + +    + +      Q      K  K 
Sbjct: 130 QALAIDVLRKNPVNEQEIKKSYDEFAKFYQGSQEVRLREIVTRTKADGQKAAADLKAKKA 189

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN-TTNPYVT 263
                 +   D    +        V +       +    P +  +    +   T+ P   
Sbjct: 190 FTAVLKQYSIDEEAKKAGGIPQAYVPLKDL----QEAAPPLYAAVKDLKKGEATSEPLQD 245

Query: 264 QKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                   + D+RD+         +              + ++ L   A I 
Sbjct: 246 GNSYAVFYVDDRRDVKV--PAFNEIKGSMARDLSTARIDDTMRALLQKADIK 295


>gi|300728336|ref|ZP_07061701.1| ppic-type ppiase domain protein [Prevotella bryantii B14]
 gi|299774401|gb|EFI71028.1| ppic-type ppiase domain protein [Prevotella bryantii B14]
          Length = 476

 Score = 59.7 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/285 (9%), Positives = 77/285 (27%), Gaps = 33/285 (11%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           +  +   + +     +  +  +   I G  ++  +                         
Sbjct: 3   IYALLTAMLLNGGMVFGQTDPVIMKIAGRPVSRSEFEYSYN------------------- 43

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
                       S    D  ++  +                + LD        F+ Y   
Sbjct: 44  ---------KNNSASVIDKKSIVDYVDLFINYKLKVKAAEDAHLDTLTSFQKEFESYRDQ 94

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           Q     + + +   +         + +Q++ N          +L    +   +    V+ 
Sbjct: 95  QVRPSFITEAEVEAEA---HKIYESERQRIDNNGGMIRPSHILLLLKQNAPAKAAEIVKN 151

Query: 201 RIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTT 258
           RI     +  +        +K++      V  G   ++++   + +F+++     +   +
Sbjct: 152 RIDSIYNALKKGANFQELAKKYSDDKGSAVQGGLLPWIVKGQTYKEFEDVAYSMKKGEMS 211

Query: 259 NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAE 303
            P+ +  G   I + DK       +LK  +        I +   +
Sbjct: 212 KPFSSPAGYHIILMTDKGKFFSYDSLKNNIYRFIEQRGIREQIID 256


>gi|241759275|ref|ZP_04757381.1| conserved hypothetical protein [Neisseria flavescens SK114]
 gi|241320411|gb|EER56708.1| conserved hypothetical protein [Neisseria flavescens SK114]
          Length = 289

 Score = 59.7 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/292 (9%), Positives = 82/292 (28%), Gaps = 12/292 (4%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVET 84
           F    +++  S  + ++   T+NG+ I    I  ++A ++    N +      Q L    
Sbjct: 6   FASALMLALTSGTLFAQTLVTVNGQAIDSSVIDDQVASVRASNPNVQDTPELRQMLTERQ 65

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
           +    + +       +    F     +    +A+  +            F+  L  Q+  
Sbjct: 66  IISTVVTQEAKKLKLDQSAEFKTALEQARADAAKQGADKKATFKTEWAVFENDLLGQAFA 125

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
             +V+          +++   N         +E  +  ++    + +        K+   
Sbjct: 126 AHIVRQ---YPVQEKDVKAAYNDFSNFYKGTQEVQLGEIVTDSSNAQKAIADLDAKKSFV 182

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN-PYVT 263
           +  ++  + +   K          + +       +    P +  +    +   T  P   
Sbjct: 183 SVLNQYSIDEAAKKAGGIPKAY--IPLKDL----QESAPPLYAAVKDLKKGAHTKTPLQN 236

Query: 264 QKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                   + D+R++            +             ++ L   A I 
Sbjct: 237 GNLYAVFYVNDRRNVTV--PSYEAAKNEIGSDLQAARVDAAIQSLLKKASIK 286


>gi|116786570|gb|ABK24159.1| unknown [Picea sitchensis]
          Length = 142

 Score = 59.7 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 28/103 (27%), Gaps = 2/103 (1%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
                R +L        +    + +    +   ++   +      +++        G   
Sbjct: 41  TYVKARHILCEKQGKINEAYKKL-QDGWLSNGDKVPPAEFAKVAAEYSECPSGKKGGDLG 99

Query: 236 YLLESDLH-PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
           +     +  P  +         T+ P+ +  G   I    +++
Sbjct: 100 FFPRGKMAGPFQEVAFNTPVGATSAPFKSTHGYHIILAEGRKN 142


>gi|213521163|gb|ACJ50520.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas fluorescens]
          Length = 279

 Score = 59.7 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 52/170 (30%), Gaps = 16/170 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSR-IRTTINGEVITDGDISKR 59
           M   +  +   +I       ++ +     I +    + +++     +NGE IT  ++S+ 
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIVALMAFTGIEAIFQASGNNKQDVAKVNGEEITQTELSQA 60

Query: 60  IALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF 106
           + + + Q +                L   A++ LI   L  Q    S   F    ++   
Sbjct: 61  VDMQRRQLMQQLGKDFDASLLDEKLLRDAALKGLIDRKLLLQGAADSKFGFSEAALDQVI 120

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
           +Q          +   F            Q+   Q +  +++        
Sbjct: 121 LQTPEFQVDGKFNAERFDQVVRQLGYSRLQF--RQMLTQEMLIGQVRAGI 168


>gi|320167884|gb|EFW44783.1| peptidyl-prolyl cis-trans isomerase [Capsaspora owczarzaki ATCC
           30864]
          Length = 179

 Score = 59.7 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 9/91 (9%), Positives = 23/91 (25%), Gaps = 1/91 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R   +   +        +    +   +   +     +  +  +      S G   +    
Sbjct: 85  RPSSWKTQNITRTRDEALAMIQQWRAQIVNKEKTFADIAKVESDCSSAKSGGDLGFFGPG 144

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            +   F++          + P  T  GV  I
Sbjct: 145 QMQAPFEHATFALQVGELSEPVFTDSGVHII 175


>gi|24372226|ref|NP_716268.1| peptidyl-prolyl cis-trans isomerase C [Shewanella oneidensis MR-1]
 gi|24346144|gb|AAN53713.1|AE015510_6 peptidyl-prolyl cis-trans isomerase C [Shewanella oneidensis MR-1]
          Length = 92

 Score = 59.7 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 8/75 (10%), Positives = 24/75 (32%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +++ +D  +            ++++S       G         + PQF  +    +    
Sbjct: 15  KEQAEDIIKQLNNGANFGALAKRYSSCPSAKKGGDLGEFKRGQMVPQFDKVAFSGELLVP 74

Query: 259 NPYVTQKGVEYIAIC 273
           +   T+ G   + + 
Sbjct: 75  HLVKTKFGWHVVKVL 89


>gi|116620016|ref|YP_822172.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116223178|gb|ABJ81887.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 313

 Score = 59.7 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/314 (5%), Positives = 75/314 (23%), Gaps = 38/314 (12%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSW--------AMSSRIRTTI-NGEVITDGDISKRIALLKL 65
           +  +   ++  C+    +  +              +     +G  +T  +  +    L  
Sbjct: 1   MKASSLCILFLCLGAAWAQTAAPPPATLPDVPDDTVIAIFGDGTKLTMAEFKRIYNALPP 60

Query: 66  QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
                 L   A  + + +    +++ K       +  + +                    
Sbjct: 61  ANQQMALRDRA--QWLHQWEMMRKLTKMAEQAKLDQESPYKEAIDYGRMNVLATAQITAT 118

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
              +     +   +  S      +      Y     +  A+  K K              
Sbjct: 119 VNAMTVEPAEIVKSYDSNKQKYTQVKVKAIYVAFSDDAAASTTKGKKPLTE--------- 169

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLL-ESDLH 243
                        + +++  + +          +++ +         G    L    ++ 
Sbjct: 170 ----------AEAKAKVEKLKAALKGGADFVKLVKENSDDETSREKGGDFATLRYTDNIP 219

Query: 244 PQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEA 302
             F+  +    + + + P     G   +     R     ++  + +              
Sbjct: 220 DAFRAAVFALKKGDVSEPLKQPNGFYLL-----RAEEVTVSPLSEVRDDIYNQLKNDRAT 274

Query: 303 EYVKKLRSNAIIHY 316
           +++ ++  ++ +  
Sbjct: 275 QWLDQVNRDSKVQI 288


>gi|254779354|ref|YP_003057459.1| hypothetical protein HELPY_0712 [Helicobacter pylori B38]
 gi|254001265|emb|CAX29242.1| Conserved hypothetical protein [Helicobacter pylori B38]
          Length = 420

 Score = 59.7 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 85/290 (29%), Gaps = 35/290 (12%)

Query: 32  SYKSWAMSSRIR----TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKK 87
           +  +  +  ++       +NG  IT   I +       Q+ +   +  A   LI E +K 
Sbjct: 154 NATNNTLEDKVVGGISLLVNGSPITLYQIQEE------QEKSKVSKAQARDRLIAERIKN 207

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           QEIE+  I  D + ++      A+  G+  + F   L  +G     ++  L       ++
Sbjct: 208 QEIERLKIHVDDDKLDQEMAMMAQQQGMDLDHFKQMLMAEGHYKL-YRDQLKEHLEMQEL 266

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           ++N  +        E    +   K+                    ++             
Sbjct: 267 LRNILLTNVDTSS-ETKMREYYNKHKEQFSIPTEIETVRYTSTSQEDLERAMADPNLEIP 325

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGV 267
              +  +                       +++      Q  +   Q + T       G 
Sbjct: 326 GVSKANEKIE--------------------MKTLNPQIAQVFISHEQGSFTPVMNGGGGQ 365

Query: 268 EY---IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                I     ++       K +++ +      +K   E+ +KLR  + I
Sbjct: 366 FITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEKLRVKSRI 415


>gi|94313616|ref|YP_586825.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Cupriavidus
           metallidurans CH34]
 gi|93357468|gb|ABF11556.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Cupriavidus
           metallidurans CH34]
          Length = 291

 Score = 59.7 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/331 (12%), Positives = 80/331 (24%), Gaps = 59/331 (17%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPI----VSYKSWAMSSRIRTTINGEVITDGDI 56
           M +   + LS   +L     +              S     +       +NG  I    +
Sbjct: 1   MNAIALSRLSGPARLALGLMLAACLAPCQAADDSGSGAGTGLPPGTLAVVNGVPIAQTQL 60

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
              + + + Q    ++ +   QELIV  + +Q  EK G       V       A      
Sbjct: 61  DDALRVAR-QADTPQMRQFFTQELIVREVLRQSAEKDGYDRRPEVVQAANTAKAS----- 114

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
                         + + +  L +  I    VK  +      +  E    +         
Sbjct: 115 -----------AEAELYLRDNLRLDPITDAQVKARYDEVVSMMGKEEYKVRIISVAD--- 160

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
                                  +  +   E           +  ++        G+  +
Sbjct: 161 ----------------------DRTARTVLEKLRAGVSFDELVRMYSVASSKEGGGEMPW 198

Query: 237 LL----------ESDLHPQFQNLLKKSQNNTT-NPYVTQKGVEYIAICDKR--DLGGEIA 283
           +           +       + +        T  P V       + +  KR   +     
Sbjct: 199 ITFRVPVVEGKSQGVPVAVAEAVSHLEVGAVTQEPVVVDNLRVIVRLDAKRATQVPAFDD 258

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           +K  +  Q     + K  A+ V  L   A I
Sbjct: 259 VKDDIRRQLHIVALNKARADVVGNLMQAATI 289


>gi|254284340|ref|ZP_04959308.1| putative peptidyl-prolyl cis-trans isomerase D [gamma
           proteobacterium NOR51-B]
 gi|219680543|gb|EED36892.1| putative peptidyl-prolyl cis-trans isomerase D [gamma
           proteobacterium NOR51-B]
          Length = 620

 Score = 59.7 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/286 (8%), Positives = 71/286 (24%), Gaps = 23/286 (8%)

Query: 48  GEVITDGDISKRIALLKLQKINGELEKIAV--QELIVETLKKQEIEKSGITFDSNTVNYF 105
           GE IT  +  +R  +    +    L    +  +       +   + +       +     
Sbjct: 111 GEEITAIEAFQRDGVFSPDQYKSVLANAGLTPERFRRMQSQDLMLSQLQGAISQSAFVSP 170

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD-----------------VV 148
               A     + E    +L+      +        +                      ++
Sbjct: 171 SEMEAAAKVWAEERDVRYLEAPLSDFDRPDSVDEAEIAEYYDNNQDRFVTEPAANVGYIL 230

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
                      E  +    + +++        R     I ++   +      R+ +    
Sbjct: 231 LAVEDFYEPVDEALVREQFEAVRDEYEVADQSRVSHILIIESDEDSDTSYADRVGEVARR 290

Query: 209 RLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKG 266
                       + +  +    S G+  +   +      +  +   S    + P  T  G
Sbjct: 291 LDAGEDFGQLAMELSDDVGSAGSGGELGFTDGTAFPEPMEEAIASLSVGAYSGPVETDAG 350

Query: 267 VEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
             +I + ++   +      L+  L      +  E+     V +L+ 
Sbjct: 351 THFIRVEERVAGERPDFATLREELEQAIKISNAERDLLLAVDELKD 396



 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/210 (10%), Positives = 50/210 (23%), Gaps = 16/210 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +          +    +++ F    + S       +     +NGE I+  ++   IA  K
Sbjct: 1   MREGAKSTAAKIVIGLIVLSFAAFGLESLLPGGSGTS-VAEVNGEEISPAELQNAIASQK 59

Query: 65  LQKIN-------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
            Q                  +   A++ LI   L  Q     G+   +  +         
Sbjct: 60  RQLTQIFGDRIDPAMLDDERIRPSALEGLIERKLLLQHAVDLGMIASAQAIGEEITAIEA 119

Query: 112 NTGLSAEDFSSFLD--KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
                      +              + +  Q +    ++            E+ A  + 
Sbjct: 120 FQRDGVFSPDQYKSVLANAGLTPERFRRMQSQDLMLSQLQGAISQSAFVSPSEMEAAAKV 179

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
                   YL   +      + +      +
Sbjct: 180 WAEERDVRYLEAPLSDFDRPDSVDEAEIAE 209


>gi|301104932|ref|XP_002901550.1| PpiC-type peptidyl-prolyl cis-trans isomerase, putative
           [Phytophthora infestans T30-4]
 gi|262100554|gb|EEY58606.1| PpiC-type peptidyl-prolyl cis-trans isomerase, putative
           [Phytophthora infestans T30-4]
          Length = 148

 Score = 59.7 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 27/85 (31%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
              + +K+ + +           ++ +        G         + P+F  +  +    
Sbjct: 48  ECDEILKELQAADDLESTFARLAKERSKCPSSRQGGDLGSFGRGQMVPEFDTVAFEKPVG 107

Query: 257 TTNPYVTQKGVEYIAICDKRDLGGE 281
             +   TQ G   + I D+  +G E
Sbjct: 108 EVHKVKTQFGWHLVLINDRSGMGDE 132


>gi|288817631|ref|YP_003431978.1| hypothetical protein HTH_0310 [Hydrogenobacter thermophilus TK-6]
 gi|288787030|dbj|BAI68777.1| hypothetical protein HTH_0310 [Hydrogenobacter thermophilus TK-6]
 gi|308751229|gb|ADO44712.1| Formiminotransferase domain protein [Hydrogenobacter thermophilus
           TK-6]
          Length = 444

 Score = 59.7 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/325 (10%), Positives = 89/325 (27%), Gaps = 22/325 (6%)

Query: 8   SLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI---ALLK 64
           +L  FI  + +     ++           ++  +    +NG  IT  D  + +   + ++
Sbjct: 10  TLLVFIVTVASG-AFFLWLFFTGSVRDITSVGKKCVAEVNGSCITLRDYRRELLRFSNIQ 68

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
            + +   ++K  ++ LI + L  Q+    G       V                  S + 
Sbjct: 69  SRDLEEVIKKQVIENLITQELLYQKARSLGFYASDEEVVSVIKSDPTFQEGGVFSASKYK 128

Query: 125 DKQGIGDNHF--KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI-- 180
           +            +    + +    +           E E   N      +   +  I  
Sbjct: 129 EMLARLGLEPGEYEDYIRRMLTVQKLLALVSNSVYLSEAEKNINLAVQSTLLSGKLYIIT 188

Query: 181 ----RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
                       +  +      ++  +  E+  +R+  + +K +            + Q 
Sbjct: 189 PSDVEVSYTPTQEEMMSFYEKNKELFRRPEKKLVRVWAEKDKAKVEEIYRAIKEGKQVQG 248

Query: 237 LLESDLHPQFQNLLKKSQNNTT------NPYVTQKG--VEYIAICDKRDLG--GEIALKA 286
             E  L      L K   +  +         VT++G     + +      G      +K 
Sbjct: 249 YTEYLLPDDANRLPKGVSSEVSKLDQKDGILVTKEGDEYLIVYLYRVEPAGIRSFEEVKE 308

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSN 311
            + +     +      +  +++   
Sbjct: 309 QIRSALIDKRKASLLRDKAQEIYKR 333



 Score = 38.1 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/267 (8%), Positives = 64/267 (23%), Gaps = 17/267 (6%)

Query: 50  VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
           +IT  D+   ++    Q+      +   +       K   +           +     + 
Sbjct: 186 IITPSDVE--VSYTPTQEEMMSFYEKNKELFRRPEKKLVRVWAEKDKAKVEEIYRAIKEG 243

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
            +  G +  ++    D   +      +   +      +V  +           +     +
Sbjct: 244 KQVQGYT--EYLLPDDANRLPKGVSSEVSKLDQKDGILVTKEGDEYLIVYLYRVEPAGIR 301

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
                  +     +              + KR+ + ++  ++                  
Sbjct: 302 SFEEVKEQIRSALIDKRKASLLRDKAQEIYKRLTEGKDVSVKYLTF--------EDTPVD 353

Query: 230 SIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS 289
            I     + E  +     +           PY   +G     I D++    +      L+
Sbjct: 354 QIMSIAKVKEGQVVSFILSKQ-----KVFGPYELSQGYGVFVITDRKKKPADEEEIKKLT 408

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                 K +      ++ L  +A I  
Sbjct: 409 QDILNMKSDATVNYLIEHLIRSAKIKI 435


>gi|124004173|ref|ZP_01689019.1| putative exported isomerase [Microscilla marina ATCC 23134]
 gi|123990243|gb|EAY29742.1| putative exported isomerase [Microscilla marina ATCC 23134]
          Length = 777

 Score = 59.7 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 48/157 (30%), Gaps = 4/157 (2%)

Query: 159 LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL-QNQGFVQKRIKDAEESRLRLPKDCN 217
            + ++    ++  +    E  +  +L  +      Q+      +I +  ++ L       
Sbjct: 117 DKAKVEELVREAYDRLKEEVRVSHILVKVDKEAEPQDTVVAYNKILELRKTVLNGKSFEQ 176

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKR 276
                +        G   Y     +   F+N   +    + ++   T+ G  ++ + D+R
Sbjct: 177 VASTHSQSPSAKQGGNIGYFTALQMVYPFENASYQTQVGSISDLLRTKFGYHFLKVTDRR 236

Query: 277 DLGGEIALKAYLSAQN--TPTKIEKHEAEYVKKLRSN 311
              G+I     +  Q      K        + K+   
Sbjct: 237 KASGKIQTAHIMIMQPAKANAKDSIEAKRKIDKIYER 273



 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/200 (8%), Positives = 53/200 (26%), Gaps = 5/200 (2%)

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
            ++  S+            +     ++                            +  + 
Sbjct: 181 HSQSPSAKQGGNIGYFTALQMVYPFENASYQTQVGSISDLLRTKFGYHFLKVTDRRKASG 240

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKA 234
           +      ++        ++    +++I    E             +F+         G  
Sbjct: 241 KIQTAHIMIMQPAKANAKDSIEAKRKIDKIYERLKAGEDWDKLCRQFSEDQPSKNKGGVL 300

Query: 235 QYLLESDLHPQFQNLLKK--SQNNTTNPYVTQK-GVEYIAICDKRDLGGEIALKAYLSAQ 291
                 +  P+F+    +     + + P  T   G   I +  KR L     ++ ++  +
Sbjct: 301 PEFGVGEAIPEFEQASFQLKEVGDFSKPVYTPYSGWHIIKLMKKRTLDTFTEVEPFIRQK 360

Query: 292 N-TPTKIEKHEAEYVKKLRS 310
               ++++     ++ KL+ 
Sbjct: 361 VAKDSRLKVTHRSFIAKLKK 380


>gi|59713880|ref|YP_206655.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Vibrio fischeri
           ES114]
 gi|197337353|ref|YP_002158333.1| peptidyl-prolyl cis-trans isomerase C [Vibrio fischeri MJ11]
 gi|59482128|gb|AAW87767.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Vibrio fischeri
           ES114]
 gi|197314605|gb|ACH64054.1| peptidyl-prolyl cis-trans isomerase C [Vibrio fischeri MJ11]
          Length = 92

 Score = 59.7 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 27/75 (36%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +++ +D  +   +  K     +K++S       G      +  + PQF  +    +    
Sbjct: 15  KEQAEDIIQQLKKGAKFHVLAKKYSSCPSGKRGGDLGEFKKGQMVPQFDKVCFSGETLVP 74

Query: 259 NPYVTQKGVEYIAIC 273
           +   T+ G   + + 
Sbjct: 75  HLVKTKFGWHVVKVL 89


>gi|39995929|ref|NP_951880.1| peptidyl-prolyl cis-trans isomerase C [Geobacter sulfurreducens
           PCA]
 gi|39982693|gb|AAR34153.1| peptidyl-prolyl cis-trans isomerase C [Geobacter sulfurreducens
           PCA]
          Length = 92

 Score = 59.7 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 9/78 (11%), Positives = 22/78 (28%), Gaps = 1/78 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNT 257
           +      +       +  +   + +        G      +  +  +F +++     N  
Sbjct: 14  EAECLQLKAEIEAGAEFADVARQHSLCPSRAQGGDLGTFTQGQMVKEFDDIVFSGEINKV 73

Query: 258 TNPYVTQKGVEYIAICDK 275
             P  TQ G   I I  +
Sbjct: 74  LGPVRTQFGYHLIEITKR 91


>gi|113968969|ref|YP_732762.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-4]
 gi|113883653|gb|ABI37705.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-4]
          Length = 92

 Score = 59.7 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 8/75 (10%), Positives = 25/75 (33%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +++ +D  +   +        ++++S       G         + PQF  +    +    
Sbjct: 15  KEQAEDIIKQLNKGANFGALAKRYSSCPSAKKGGDLGEFKRGQMVPQFDKVAFSGELLVL 74

Query: 259 NPYVTQKGVEYIAIC 273
           +   T+ G   + + 
Sbjct: 75  HLVKTKFGWHVVKVL 89


>gi|91228750|ref|ZP_01262661.1| peptidyl-prolyl cis-trans isomerase C [Vibrio alginolyticus 12G01]
 gi|153838954|ref|ZP_01991621.1| peptidyl-prolyl cis-trans isomerase C [Vibrio parahaemolyticus
           AQ3810]
 gi|254229070|ref|ZP_04922490.1| peptidyl-prolyl cis-trans isomerase C [Vibrio sp. Ex25]
 gi|260903134|ref|ZP_05911529.1| foldase protein PrsA [Vibrio parahaemolyticus AQ4037]
 gi|262396656|ref|YP_003288509.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio sp. Ex25]
 gi|269966089|ref|ZP_06180179.1| peptidyl-prolyl cis-trans isomerase C [Vibrio alginolyticus 40B]
 gi|91187696|gb|EAS74017.1| peptidyl-prolyl cis-trans isomerase C [Vibrio alginolyticus 12G01]
 gi|149747588|gb|EDM58518.1| peptidyl-prolyl cis-trans isomerase C [Vibrio parahaemolyticus
           AQ3810]
 gi|151938361|gb|EDN57199.1| peptidyl-prolyl cis-trans isomerase C [Vibrio sp. Ex25]
 gi|262340250|gb|ACY54044.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio sp. Ex25]
 gi|269829236|gb|EEZ83480.1| peptidyl-prolyl cis-trans isomerase C [Vibrio alginolyticus 40B]
 gi|308107784|gb|EFO45324.1| foldase protein PrsA [Vibrio parahaemolyticus AQ4037]
 gi|328470253|gb|EGF41164.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Vibrio
           parahaemolyticus 10329]
          Length = 92

 Score = 59.7 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 25/77 (32%), Gaps = 4/77 (5%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +++ +D  +   +  K     +K+++       G         + PQF  +         
Sbjct: 15  KEQAEDIIKQLKKGAKFQTLAKKYSTCPSGKRGGDLGEFRRGQMVPQFDKV--CFSGEVL 72

Query: 259 NP--YVTQKGVEYIAIC 273
            P    T+ G   + + 
Sbjct: 73  TPHLVKTKFGWHVVKVL 89


>gi|291238039|ref|XP_002738936.1| PREDICTED: CG11858-like [Saccoglossus kowalevskii]
          Length = 131

 Score = 59.7 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               ++ +A E      +      K++        G   ++    +   FQ+       +
Sbjct: 46  EKHSKVMEAMEKLKAGERFNEVATKYSED-KARQGGDLGWMTRGSMVGPFQDAAFALSPS 104

Query: 257 TTN-------PYVTQKGVEYIAICDKR 276
           TT        P  T+ G   I I  K+
Sbjct: 105 TTGNPVYTDPPVKTKFGYHIIMIEGKK 131


>gi|91079624|ref|XP_967576.1| PREDICTED: similar to dodo [Tribolium castaneum]
 gi|270004471|gb|EFA00919.1| hypothetical protein TcasGA2_TC003825 [Tribolium castaneum]
          Length = 159

 Score = 59.7 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 11/104 (10%), Positives = 24/104 (23%), Gaps = 1/104 (0%)

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
           Q    +   +   R   +   +        ++      E+         +   K++    
Sbjct: 52  QCSHLLVKHKDSRRPSSWREENITRTKDEALELVKSYREQIVQGKASFADLASKYSDCSS 111

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
               G         +   F+           + P  T  GV  I
Sbjct: 112 AKRGGDLGSFKRGAMQKPFEEASFALKVGELSEPVFTDSGVHII 155


>gi|88803462|ref|ZP_01118988.1| PPIC-type PPIASE domain protein [Polaribacter irgensii 23-P]
 gi|88781028|gb|EAR12207.1| PPIC-type PPIASE domain protein [Polaribacter irgensii 23-P]
          Length = 544

 Score = 59.7 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/167 (11%), Positives = 52/167 (31%), Gaps = 4/167 (2%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
           +  K G +                     +  L              + +I +       
Sbjct: 205 YTTKIGAVSHPFKTQFGFHILKVDDFRTSKGALEVAHILITDTTAVGKSKIAEVYAKIQE 264

Query: 212 LPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVE 268
                    +F+       + GK        +   F++     + + + + P+ T+ G  
Sbjct: 265 NETFEKLAAQFSMDTSSKRNGGKLNKFGIGKMVKPFEDAAFSLQKEGDVSKPFRTRFGWH 324

Query: 269 YIAICDKRDLGGEIALKAYLSAQN-TPTKIEKHEAEYVKKLRSNAII 314
            + +  K  +   + L+A L+ +    ++++  E   + KL+++  I
Sbjct: 325 IVKLLAKYPVKSFLELRAELTDKVKRSSRMQMSETAVINKLKASYSI 371



 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 36/300 (12%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K +      +IF +         + + +   TIN E+ T  D  +              
Sbjct: 1   MKKIVLSICFLIFVL------NLSSQNKKTLVTINNEITTVEDFKRIYEKNL-------- 46

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
              A+     +++KK                +  +   R+     + +   L    + D 
Sbjct: 47  --DAIDSKEAKSVKKNLTLYIDYRLKVAEAYHLKLDTLRSYQKEIKMYREQLMAPYLQDT 104

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            F   L  +  +    +            +       +    +     R +         
Sbjct: 105 TFISDLVKEIYFRTTNEVKAKHILVRTSEDAVPRDTLIAYNKITAIRNRII-------NG 157

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LK 251
           ++   V   + +               +         + G   Y     +   F+++   
Sbjct: 158 EDFEAVAVAVSEDV-----------SAQDDPRSGRKGNKGDLGYFDAFKMVSSFEDVAYT 206

Query: 252 KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
                 ++P+ TQ G   + + D R   G + + A++   +T    +   AE   K++ N
Sbjct: 207 TKIGAVSHPFKTQFGFHILKVDDFRTSKGALEV-AHILITDTTAVGKSKIAEVYAKIQEN 265


>gi|294637926|ref|ZP_06716195.1| peptidylprolyl isomerase PrsA2 [Edwardsiella tarda ATCC 23685]
 gi|291088952|gb|EFE21513.1| peptidylprolyl isomerase PrsA2 [Edwardsiella tarda ATCC 23685]
          Length = 93

 Score = 59.7 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 17/68 (25%), Gaps = 1/68 (1%)

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQK 265
           +   R         + +        G         + P+F   +  S       P  T+ 
Sbjct: 23  QKLRRGANFQALARRHSRCPSKRQGGDLGEFRRGSMVPEFDRAVFSSPLLTPVGPVKTRF 82

Query: 266 GVEYIAIC 273
           G   I + 
Sbjct: 83  GYHIIKVL 90


>gi|148234054|ref|NP_001089028.1| peptidylprolyl cis/trans isomerase, NIMA-interacting 1 [Xenopus
           laevis]
 gi|50416500|gb|AAH77181.1| LOC503670 protein [Xenopus laevis]
 gi|77748402|gb|AAI06674.1| LOC503670 protein [Xenopus laevis]
          Length = 159

 Score = 59.7 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 8/106 (7%), Positives = 28/106 (26%), Gaps = 1/106 (0%)

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
             +    +       R   +   +        ++      ++ +       +   +F+  
Sbjct: 50  KVRCSHLLVKHNQSRRPSSWRQDNITRTKDEALELINGYIQKIKSGDEDFESLASQFSDC 109

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
               + G      +  +   F++          + P  T+ G+  I
Sbjct: 110 SSAKAGGDLGSFGKGAMQKPFEDASFALRPGEMSGPVFTESGIHII 155


>gi|282859614|ref|ZP_06268717.1| PPIC-type PPIASE domain protein [Prevotella bivia JCVIHMP010]
 gi|282587617|gb|EFB92819.1| PPIC-type PPIASE domain protein [Prevotella bivia JCVIHMP010]
          Length = 377

 Score = 59.7 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/273 (8%), Positives = 64/273 (23%), Gaps = 34/273 (12%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELI 81
           + +  ++ ++  ++ A +  I  TING+ +T  +                          
Sbjct: 3   IKMLLLLSMIGLQAIAQTDSIVMTINGKAVTRSEFEYAYQ-------------------- 42

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
                  +  K+G           +  + +    + E                       
Sbjct: 43  -------KNNKNGRHIKIANFAKQYALYKQKVAAAEEARLDKTASFNEQVESLLSPTVAP 95

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
              P            +LE +      + +        + +    +         + + +
Sbjct: 96  VSIPT-----VSTPSASLEQDARRLYNEERREVEGNGGLVSYGEILIRINQHATAYEEDK 150

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL--LESDLHPQFQNLLKKSQNNTTN 259
            +   +S  R  +        A K      G+   +      L    + L          
Sbjct: 151 ARVLADSVYRALQGGADFATLAKKYSQTKGGRVFAVVGRNEVLEEVEKALFSMQAGELRA 210

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN 292
           P  +  G   + +  +        ++  L  Q 
Sbjct: 211 PVTSPFGFHILKVYAREQYPAYEVVRPRLIKQL 243


>gi|153834526|ref|ZP_01987193.1| peptidyl-prolyl cis-trans isomerase C [Vibrio harveyi HY01]
 gi|156976478|ref|YP_001447384.1| peptidyl-prolyl cis-trans isomerase C [Vibrio harveyi ATCC
           BAA-1116]
 gi|269962816|ref|ZP_06177156.1| peptidyl-prolyl cis-trans isomerase C [Vibrio harveyi 1DA3]
 gi|148869045|gb|EDL68086.1| peptidyl-prolyl cis-trans isomerase C [Vibrio harveyi HY01]
 gi|156528072|gb|ABU73157.1| hypothetical protein VIBHAR_05251 [Vibrio harveyi ATCC BAA-1116]
 gi|269832370|gb|EEZ86489.1| peptidyl-prolyl cis-trans isomerase C [Vibrio harveyi 1DA3]
          Length = 92

 Score = 59.7 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 25/77 (32%), Gaps = 4/77 (5%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +++ +D  +   +  K     +K+++       G         + PQF  +         
Sbjct: 15  KEQAEDIIQQLKKGAKFQTLAKKYSTCPSGKRGGDLGEFRRGQMVPQFDKV--CFSGEVL 72

Query: 259 NP--YVTQKGVEYIAIC 273
            P    T+ G   + + 
Sbjct: 73  TPHLVKTKFGWHVVKVL 89


>gi|110346942|ref|YP_665760.1| hypothetical protein Meso_4128 [Mesorhizobium sp. BNC1]
 gi|110283053|gb|ABG61113.1| hypothetical protein Meso_4128 [Chelativorans sp. BNC1]
          Length = 725

 Score = 59.7 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/196 (9%), Positives = 51/196 (26%), Gaps = 15/196 (7%)

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
              ++ +   + + +   +    + +I A     ++  V     R     I     +   
Sbjct: 510 ETRLRLLRQMMEQEEVDDRIEVSDEQIQAFYSDNRDRLVSPPKSRIRYVRIGLGSSEADA 569

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIH-----DVSIGKA-QYLLESDLH------- 243
              +   D    +L      +     A +           G+   ++ ES          
Sbjct: 570 SRARERSDEAYRKLTGAVPGSDFASVAQEYSEDVETASKGGEFPDWIGESGDPLGELMSH 629

Query: 244 PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHE 301
           P  + +          P+     +  + + ++           K ++    T  +     
Sbjct: 630 PFHEAIQDMEPGKVGKPFELGGSIYIVEVTERTLPQQLTLDEAKPFIEEYLTNQQHRSMA 689

Query: 302 AEYVKKLRSNAIIHYY 317
            E  ++    A +  Y
Sbjct: 690 EELQRRQLQEAKVQLY 705



 Score = 47.0 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/341 (9%), Positives = 82/341 (24%), Gaps = 43/341 (12%)

Query: 8   SLSDFIKLLTTYFVLIIFCIVPIVSYKSWAM-----SSRIRTTINGEVITDGDISKRIAL 62
           +L  ++  +     +    +     Y +        +  +  T  G  IT  DI   + +
Sbjct: 102 TLGQYVASIFAITTIPAALVFFSSDYFADMTLPSPPAPNVVATFEGGQITLEDIEAHLNM 161

Query: 63  LKLQK-INGELEKIAV----QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
           L       G + + A+    ++L+ + L  +         D +  +     +      S 
Sbjct: 162 LSSSTSNPGPMSQEALLETVEDLVSDQLILRWAANRKPEADESFQHAIKHINENLNLESF 221

Query: 118 EDFSSFLDKQG----IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
            D             I + + K     +      V+++        +          K  
Sbjct: 222 ADQLHTERISISESSIREYYDKNKARYEGRSFTEVRDEIRRTLVAEQEPAFVEDYLEKLR 281

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS--- 230
           T         L  +P    +      ++  D  +   R   D  +               
Sbjct: 282 TSASITRSFDLLDVPAPSQKELETYYRQNIDRFKLPRRAIVDELEFSASQFSPKAQQEAA 341

Query: 231 ---IGKAQ---------------YLLESDLHPQFQNLLKKS------QNNTTNPYVTQKG 266
              +G                  +   +++    +N                + +     
Sbjct: 342 SALLGIQGGATFQATAGRFSKARFSSRAEVPEGSRNPDWDKYVFALVPGELASVFQAGGS 401

Query: 267 VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
              + + +    G +    A +      T   + E  +   
Sbjct: 402 YYVVRLQEVMPAGAKS--FAEVRPTIMTTVRTQKEQRWFAD 440



 Score = 38.5 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 6/40 (15%), Positives = 17/40 (42%)

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           + +      ++  +       +      +Y++KLR++A I
Sbjct: 247 RYEGRSFTEVRDEIRRTLVAEQEPAFVEDYLEKLRTSASI 286


>gi|299529221|ref|ZP_07042666.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni S44]
 gi|298722844|gb|EFI63756.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni S44]
          Length = 263

 Score = 59.7 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 90/278 (32%), Gaps = 48/278 (17%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKIN--GELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG+ +    ++     ++        E+EK+   E+I   +  QE  + G+     
Sbjct: 29  VAIVNGKAVPMARVNALKTQIEASGQPVVPEMEKMIKDEVIAREIFMQEANRRGLAGSEA 88

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q++    + +DF  K    +
Sbjct: 89  YKQQ-------------------------------MEMARQTVLIRALFDDFRKKNPVTD 117

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E  A   K       +    + +    +++ +      K  K  E+            +
Sbjct: 118 AEAKAEYDKFVAANGGKEYKASHILVESEDRAKAIIAEVKAGKKFEDI----------AK 167

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDKRD 277
           K +         G   +   ++  P+F + L+K  +   T+ P  +Q G   I + D+R 
Sbjct: 168 KESKDPGSGARGGDLDWANPNNYVPEFTEALIKLKKGEMTDAPVKSQFGWHIIRMDDERQ 227

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
              E+     +  Q T    ++ E ++  +LR +A I 
Sbjct: 228 A--EMPKFEDVKPQITQQLQQQKEQQFQDQLRKSAKIQ 263


>gi|264679103|ref|YP_003279010.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni CNB-2]
 gi|262209616|gb|ACY33714.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni CNB-2]
          Length = 263

 Score = 59.7 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 90/278 (32%), Gaps = 48/278 (17%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKIN--GELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG+ +    ++     ++        E+EK+   E+I   +  QE  + G+     
Sbjct: 29  VAIVNGKAVPMARVNALKTQIEASGQPVVPEMEKMIKDEVIAREIFMQEANRRGLAGSEA 88

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q++    + +DF  K    +
Sbjct: 89  YKQQ-------------------------------MEMARQTVLIRALFDDFRKKNPVTD 117

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E  A   K       +    + +    +++ +      K  K  E+            +
Sbjct: 118 AEAKAEYDKFVAANGGKEYKASHILVESEDRAKAIIAEVKAGKKFEDI----------AK 167

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN-PYVTQKGVEYIAICDKRD 277
           K +         G   +   ++  P+F + L+K  +   T+ P  +Q G   I + D+R 
Sbjct: 168 KESKDPGSGARGGDLDWANPNNYVPEFTEALIKLKKGEMTDAPVKSQFGWHIIRMDDERQ 227

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
              E+     +  Q T    ++ E ++  +LR +A I 
Sbjct: 228 A--EMPKFEDVKPQITQQLQQQKEQQFQDQLRKSAKIQ 263


>gi|50603672|gb|AAH77447.1| Unknown (protein for IMAGE:4058360) [Xenopus laevis]
          Length = 158

 Score = 59.7 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 8/106 (7%), Positives = 26/106 (24%), Gaps = 1/106 (0%)

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
             +    +       R   +            ++      ++ +       +   +F+  
Sbjct: 49  KVRCSHLLVKHNQSRRPSSWRQDKITRSKDEALELINGYIQKMKSGDEDFESLASQFSDC 108

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
               + G      +  +   F++          + P  T  G+  I
Sbjct: 109 SSAKAGGDLGSFGKGAMQKPFEDASFALRPGEMSGPVFTDSGIHII 154


>gi|148227870|ref|NP_001084236.1| prolyl isomerase Pin1 b [Xenopus laevis]
 gi|7259613|gb|AAF43897.1|AF239760_1 prolyl isomerase Pin1 [Xenopus laevis]
          Length = 159

 Score = 59.7 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 8/106 (7%), Positives = 26/106 (24%), Gaps = 1/106 (0%)

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
             +    +       R   +            ++      ++ +       +   +F+  
Sbjct: 50  KVRCSHLLVKHNQSRRPSSWRQDKITRSKDEALELINGYIQKMKSGDEDFESLASQFSDC 109

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
               + G      +  +   F++          + P  T  G+  I
Sbjct: 110 SSAKAGGDLGSFGKGAMQKPFEDASFALRPGEMSGPVFTDSGIHII 155


>gi|42520635|ref|NP_966550.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|42410374|gb|AAS14484.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 602

 Score = 59.7 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/377 (7%), Positives = 81/377 (21%), Gaps = 77/377 (20%)

Query: 8   SLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ- 66
           ++ +F   +T   +  +   + I +  S          +  EVIT  +          Q 
Sbjct: 2   NVKNFFTKVTVVLLACLLIFMGIGNLLSGDDEKEEVARVGKEVITSDEYKSLYQNYGKQI 61

Query: 67  -------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                  +   +L+   +  LI + L      + G+T    ++               E 
Sbjct: 62  SGSDASREQVKKLKYDLLNGLIEQKLLFNLTSELGLTVGEESIKNHIKNTKYFQNDKGEF 121

Query: 120 -----------------------------FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
                                                             + I+    + 
Sbjct: 122 DKNKFYETLNDLHMTEKEYIAKLEKVLPAMMFMTSLFKDNYPVTFGEKIDEQIYKSRYQT 181

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD------ 204
             +      E  +    +      +  Y      F  P+ +      + ++  +      
Sbjct: 182 RVVDIVKITEDAVTNIPEPDDQALLDLYERNKSHFYYPEYRTAQYISLGQKYFEDQIKIS 241

Query: 205 ---------AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--------- 246
                     +E + +                     +        +  +F         
Sbjct: 242 DEEVDGIIEQQELKNQRDIFNAIFSTKEEAETARRAFEEGKTSFEQIVEEFGKAKLEETR 301

Query: 247 --------------QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEI--ALKAYLSA 290
                         + +        +    +  G   + +     +  E    LK  + +
Sbjct: 302 VNNITKDFLPEDVREKVFALKVGEVSEVLASSFGWHIVKVESAHQISDEDLVDLKKDIKS 361

Query: 291 QNTPTKIEKHEAEYVKK 307
             T  K  +   +++ +
Sbjct: 362 VLTNQKSFERVNDFINQ 378


>gi|308388554|gb|ADO30874.1| hypothetical protein NMBB_0386 [Neisseria meningitidis alpha710]
 gi|325136920|gb|EGC59517.1| hypothetical protein NMBM0579_0318 [Neisseria meningitidis M0579]
          Length = 288

 Score = 59.3 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/301 (9%), Positives = 78/301 (25%), Gaps = 17/301 (5%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +  +  +    S  +         T+NG+ I    I  ++A  + +    E    
Sbjct: 1   MKAKILTSVALLACSGSLFAQT-----LATVNGQKIDSSVIDAQVAAFRAENSRAEDTPQ 55

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
             Q L+   +    + +       +    F    A+    + +                K
Sbjct: 56  LRQSLLENEVVNTVVAQEVKRLKLDRSAEFKNALAKLRAEAKKSGDDKKPSFKTVWQAVK 115

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
                  +  +             E E+ A    +         ++         +   +
Sbjct: 116 YG-----LNGEAYALHIAKTQPVSEQEVKAAYDNISGFYKGTQEVQLGEILTDKEENAKK 170

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN 255
                + K   ++ L+     ++ ++  + +  V +       E  + P ++ +    + 
Sbjct: 171 AVADLKAKKGFDAVLKQYSLNDRTKQTGAPVGYVPLKDL----EQGVPPLYRAIKDLKKG 226

Query: 256 NTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             T  P           + D R++         +  Q       +     V  L   A I
Sbjct: 227 EFTATPLKNGDFYGVYYVNDSREVKV--PSFDEMKGQIAGNLQAERIDRAVGALLGKANI 284

Query: 315 H 315
            
Sbjct: 285 K 285


>gi|308184447|ref|YP_003928580.1| hypothetical protein HPSJM_03355 [Helicobacter pylori SJM180]
 gi|308060367|gb|ADO02263.1| hypothetical protein HPSJM_03355 [Helicobacter pylori SJM180]
          Length = 400

 Score = 59.3 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 88/288 (30%), Gaps = 35/288 (12%)

Query: 34  KSWAMSSRIR----TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
               +  ++       +NG  IT   I +       Q+ +   +  A   LI E +K QE
Sbjct: 136 AGSTLEDKVVGGISLLVNGSPITLYQIQEE------QEKSKVSKAQARDRLIAERIKNQE 189

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
           IE+  I  D + ++      A+  G+  + F   L  +G     ++  L       ++++
Sbjct: 190 IERLKIHVDDDKLDQEMAMMAQQQGMDLDHFKQMLMAEGHYKL-YRDQLKEHLEMQELLR 248

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
           N  +                              +         NQ  +++ + +     
Sbjct: 249 NILLTNVDTSSETKMREYYNKHKEQFSIPTEIETVRY----TSTNQEDLERAMSNPNLEV 304

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY 269
             + K   K+E                 +++      Q  +   Q + T       G   
Sbjct: 305 PGVSKANEKIE-----------------MKTLNPQIAQVFISHEQGSFTPVMNGGGGQFI 347

Query: 270 ---IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              I     ++       K +++ +      +K   E+ +KLR  + I
Sbjct: 348 TFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEKLRVKSRI 395


>gi|296272834|ref|YP_003655465.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Arcobacter
           nitrofigilis DSM 7299]
 gi|296097008|gb|ADG92958.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Arcobacter
           nitrofigilis DSM 7299]
          Length = 95

 Score = 59.3 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 9/73 (12%), Positives = 25/73 (34%), Gaps = 1/73 (1%)

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQ 264
           E+            E+++        G+     +  +  +F++++  +       P  T+
Sbjct: 23  EQIISGDLDFVEAAEQYSLCPSGDQGGELGTFGKGQMVKEFEDVVFSAPVGEIQGPVQTE 82

Query: 265 KGVEYIAICDKRD 277
            G   I +  + D
Sbjct: 83  FGYHLIEVTSRND 95


>gi|254883666|ref|ZP_05256376.1| LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase
           [Bacteroides sp. 4_3_47FAA]
 gi|254836459|gb|EET16768.1| LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase
           [Bacteroides sp. 4_3_47FAA]
          Length = 344

 Score = 59.3 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/208 (9%), Positives = 61/208 (29%), Gaps = 11/208 (5%)

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
           E    + +K         +           ++   +        E+    + +   ++  
Sbjct: 1   EKVEEYYNKTSTQIREMLRENIRDGKTVQKMQQQIVGDIKITPAEVRRYFKDLPQDSIPF 60

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI-----G 232
              +  +  I       Q  +++  K   +   R+          A    +        G
Sbjct: 61  IPTQVEVQIITMEPKIPQEEIERVKKTLRDYTERVTSGEIAFSTLARLYSEDEGSRRRGG 120

Query: 233 KAQYLLESDLHPQFQN--LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA 290
           +  ++  ++L P++ N     +  N  +    ++ G   I + +KR   G+     ++  
Sbjct: 121 ELGFMGRAELVPEYANVAFNLQDPNKVSKIVESEFGFHIIQLIEKR---GDRINTRHILL 177

Query: 291 QNT-PTKIEKHEAEYVKKLRSNAIIHYY 317
           +     K  +     +  + ++     +
Sbjct: 178 KPKVDEKDLEAALLRLDSIANDIRNEKF 205


>gi|323494654|ref|ZP_08099757.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Vibrio brasiliensis
           LMG 20546]
 gi|323311087|gb|EGA64248.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Vibrio brasiliensis
           LMG 20546]
          Length = 92

 Score = 59.3 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 9/75 (12%), Positives = 26/75 (34%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +++ +D  +   +  K     +K+++       G         + PQF  +    +    
Sbjct: 15  KEQAEDIIKQLKKGAKFQTLAKKYSNCPSGKRGGDLGEFKRGQMVPQFDKVCFSGETLVP 74

Query: 259 NPYVTQKGVEYIAIC 273
           +   T+ G   + + 
Sbjct: 75  HLVKTKFGWHVVKVL 89


>gi|120599379|ref|YP_963953.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           W3-18-1]
 gi|146292625|ref|YP_001183049.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           putrefaciens CN-32]
 gi|120559472|gb|ABM25399.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           W3-18-1]
 gi|145564315|gb|ABP75250.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           putrefaciens CN-32]
 gi|319425929|gb|ADV54003.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           putrefaciens 200]
          Length = 92

 Score = 59.3 bits (141), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 8/78 (10%), Positives = 24/78 (30%), Gaps = 1/78 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           +++ +  ++  +            +S       G+        +  +F + +     N  
Sbjct: 14  EEQCQALKQQIIDGADFAQIARAHSSCPSGAQGGELGSFGPGMMVREFDEVVFSAPLNEV 73

Query: 258 TNPYVTQKGVEYIAICDK 275
             P  TQ G   + +  +
Sbjct: 74  QGPVKTQFGYHLLEVTSR 91


>gi|325132900|gb|EGC55577.1| hypothetical protein NMBM6190_0280 [Neisseria meningitidis M6190]
          Length = 288

 Score = 59.3 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/301 (10%), Positives = 78/301 (25%), Gaps = 17/301 (5%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +  +  +    S  +         T+NG+ I    I  ++A  + +    E    
Sbjct: 1   MKAKILTSVALLACSGSLFAQT-----LATVNGQKIDSSVIDAQVAAFRAENSRAEDTPQ 55

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
             Q L+   +    + +       +    F    A+    + +                K
Sbjct: 56  LRQSLLENEVVNTVVAQEVKRLKLDRSAEFKNALAKLRAEAKKSGDDKKPSFKTVWQAVK 115

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
                  +  +             E E+ A    +         ++         +   +
Sbjct: 116 YG-----LNGEAYALHIAKTQPVSEQEVKAAYDNISGFYKGTQEVQLGEILTDKEENAKK 170

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN 255
                R K   ++ L+     ++ ++  + +  V +       E  + P +Q +    + 
Sbjct: 171 AVADLRAKKGFDAVLKQYSLNDRTKQTGAPVGYVPLKDL----EQGVPPLYQAIKDLKKG 226

Query: 256 NTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             T  P           + D R++         +  Q       +     V  L   A I
Sbjct: 227 EFTATPLKNGDFYGVYYVNDSREVKV--PSFDEMKGQIAGNLQAERIDRAVGALLGKANI 284

Query: 315 H 315
            
Sbjct: 285 K 285


>gi|110639640|ref|YP_679850.1| peptidyl-prolyl cis-trans isomerase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110282321|gb|ABG60507.1| peptidyl-prolyl cis-trans isomerase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 697

 Score = 59.3 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 13/135 (9%), Positives = 35/135 (25%), Gaps = 10/135 (7%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
             +  +   +  + +   +K+ +                 ++       + G   +  + 
Sbjct: 343 HILFRTNETDPAEKKAEAKKQAQQILAEIQNGASFEKMAAQYGGDGTAANGGDLGWFGKG 402

Query: 241 DLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE 298
            +   F+N +          N   TQ G   I +   +     +          +  K  
Sbjct: 403 QMVKPFENAIFGASKPGLLPNIVETQFGYHIIRVDVAKTGRKFLIA--------SVQKNV 454

Query: 299 KHEAEYVKKLRSNAI 313
           +     V  +  NA 
Sbjct: 455 EAFDNTVDSIYRNAD 469



 Score = 37.0 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 38/376 (10%), Positives = 96/376 (25%), Gaps = 61/376 (16%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           + +K+       +  +    +L +           ++  +     I+G  IT  +  K I
Sbjct: 3   IFNKINQRSGLVVGTIVAGLLLFLLGDAFTSKNSFFSSFNNKVGEIDGSNITVEEFQKEI 62

Query: 61  ----ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
               AL      N  ++ +A  +L+ E + K   EK+GI                +  + 
Sbjct: 63  TKAEALYGGNGNNANMDDLAWTQLVFERVNKVVYEKAGIEISEGEKVDLLEGEHMSDVVK 122

Query: 117 AE--------------DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE-- 160
            +              D      ++       +     + ++ + +++ +       E  
Sbjct: 123 QQFGSAEQLKQFLKYLDSDQIQSEEERASIKGRWRALKEYVYNERMRSKYETIIKKSEYV 182

Query: 161 --MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
              E       + +    EY+                  ++  +K  +           +
Sbjct: 183 TKAEAKRYYHALNDKAEAEYVYVPYFSINDTTITVTDAMLEDYLKAHKNEFEVEAGRSIE 242

Query: 219 LEKFASKIHDVSIG-------------------------------KAQYLLESDLHPQFQ 247
              F +    V                                     Y+  + L P   
Sbjct: 243 FAVFNNVPTGVDSSYVKKDLAELKDEFVLAKNDSAFIRSNSDAPADPSYVQLNQLPPALA 302

Query: 248 NLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL-----SAQNTPTKIE--K 299
             +     ++   P+    G     I         +A  +++            K E  K
Sbjct: 303 ARVNSLQIDSVYGPFSYGTGYSLTKILKIESDTNVMAKASHILFRTNETDPAEKKAEAKK 362

Query: 300 HEAEYVKKLRSNAIIH 315
              + + ++++ A   
Sbjct: 363 QAQQILAEIQNGASFE 378


>gi|303283972|ref|XP_003061277.1| peptidyl-prolyl cis-trans isomerase [Micromonas pusilla CCMP1545]
 gi|226457628|gb|EEH54927.1| peptidyl-prolyl cis-trans isomerase [Micromonas pusilla CCMP1545]
          Length = 210

 Score = 59.3 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 9/70 (12%), Positives = 21/70 (30%), Gaps = 1/70 (1%)

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
            +   +  K++        G         +  +F + +          P  TQ G   I 
Sbjct: 141 DRFAREAGKYSECPSKSKGGSLGTFKPGQMVKEFNDAVFDGPVMEIQGPVQTQFGYHLIL 200

Query: 272 ICDKRDLGGE 281
           + D+ +   +
Sbjct: 201 VTDRVEKEAK 210


>gi|163800282|ref|ZP_02194183.1| peptidyl-prolyl cis-trans isomerase C [Vibrio sp. AND4]
 gi|159175725|gb|EDP60519.1| peptidyl-prolyl cis-trans isomerase C [Vibrio sp. AND4]
          Length = 92

 Score = 59.3 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 25/77 (32%), Gaps = 4/77 (5%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +++ +D  +   +  K     +K+++       G         + PQF  +         
Sbjct: 15  KEQAEDIIQQLKKGAKFQTLAKKYSTCPSGKKGGDLGEFRRGQMVPQFDKV--CFSGEVL 72

Query: 259 NP--YVTQKGVEYIAIC 273
            P    T+ G   + + 
Sbjct: 73  TPHLVKTKFGWHVVKVL 89


>gi|289549224|ref|YP_003474212.1| hypothetical protein Thal_1456 [Thermocrinis albus DSM 14484]
 gi|289182841|gb|ADC90085.1| hypothetical protein Thal_1456 [Thermocrinis albus DSM 14484]
          Length = 444

 Score = 59.3 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/341 (9%), Positives = 85/341 (24%), Gaps = 28/341 (8%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI- 60
             +    L   + +++  F L +F    +        +      +NG  I+  D    + 
Sbjct: 5   IQRHRKFLVVTVSVVSFAFFLWLFLAGSVQDILRGKRA--CVAVVNGTCISLRDYRMELL 62

Query: 61  ---ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQHARNTGL 115
                LK +++ G +++  +  LIV  L  Q+  + G       V          +  G+
Sbjct: 63  PYSQFLKNEEMEGMIKEQVLDSLIVRELLYQKALEMGFVASDEEVIDTIKSDPTFQEGGV 122

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP----------- 164
            +      + ++   +    +    + +    + +         E E             
Sbjct: 123 FSASKYREVLERNNLEPAQYEEYLKKMLSIQKLVSFISNSVYITEKEKQANLLPYTTLLT 182

Query: 165 ---ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
                          E     +L     ++ + +   ++ ++  E  +     +     K
Sbjct: 183 GKLYLITPDSVKISYEPTDAELLNYYHQHREEFKRPEKRVVRLWETPQRDEALNIYNQLK 242

Query: 222 FASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL--G 279
            +                         + + S                + +         
Sbjct: 243 SSKVPTGYREVILPQQEAELSPVLRAEITRLSSKEPYTVTKDGDKFVVLWLYSWEPSGYE 302

Query: 280 GEIALKAYLSAQNTPT----KIEKHEAEYVKKLRSNAIIHY 316
               +K  +           K++       K L+    I Y
Sbjct: 303 DFNNVKDKIKQLLVQQKRLEKLQDVAQSAYKDLKEGKQIDY 343



 Score = 40.4 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 16/169 (9%), Positives = 44/169 (26%), Gaps = 6/169 (3%)

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
            +   +      + +  +       +     ++            + +    +Q   + A
Sbjct: 272 RLSSKEPYTVTKDGDKFVVLWLYSWEPSGYEDFNNVKDKIKQLLVQQKRLEKLQDVAQSA 331

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQK 265
            +      +   +   F+       +     + + DL     +           PY   +
Sbjct: 332 YKDLKEGKQIDYRYLAFSDTPIS-QLASLMKIPQEDLVKLLVSKET-----VFGPYAIAQ 385

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           G   + I  K     +   +  L       K +     Y++ L+  A I
Sbjct: 386 GYAVLKIESKTTKSLDDKQQKDLIKDILSLKTDSVLNYYLESLKKRAKI 434


>gi|332673506|gb|AEE70323.1| SurA domain protein [Helicobacter pylori 83]
          Length = 411

 Score = 59.3 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 81/288 (28%), Gaps = 35/288 (12%)

Query: 34  KSWAMSSRIR----TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
            +  +  ++       +NG  IT   I +       Q+ +   +  A   LI E +K QE
Sbjct: 147 ANSTLEDKVVGGISLLVNGSPITLYQIQEE------QEKSKVSKAQARDRLIAERIKNQE 200

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
           IE+  I  D + ++      A+  G+  + F   L  +G     ++  L       ++++
Sbjct: 201 IERLKIHVDDDKLDQEMAMMAQQQGMDLDHFKQMLMAEGHYKL-YRDQLKEHLEMQELLR 259

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
           N  +                              +     N+   +  +     +     
Sbjct: 260 NILLTNVDTSSETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMADPNLEVPGVS 319

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY 269
               K   K                            Q  +   Q + T       G   
Sbjct: 320 KANEKIEMKTLN---------------------PQIAQVFISHEQGSFTPVMNGGGGQFI 358

Query: 270 ---IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              I     ++       K +++ +      +K   E+ +KLR  + I
Sbjct: 359 TFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEKLRVKSRI 406


>gi|307190110|gb|EFN74266.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Camponotus
           floridanus]
          Length = 162

 Score = 59.3 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 9/92 (9%), Positives = 22/92 (23%), Gaps = 1/92 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R   +   +     +  ++      E+             K++        G        
Sbjct: 68  RPSSWREENITRSKEEALELVKSYREQIASGKATFAELASKYSDCSSAKRGGDLGPFSRG 127

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
            +   F+           ++P  T  G+  I 
Sbjct: 128 AMQKPFEQAAFTLKVGELSSPVHTDSGIHIIQ 159


>gi|284923881|emb|CBG36980.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli 042]
          Length = 93

 Score = 59.3 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 17/67 (25%), Gaps = 1/67 (1%)

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKG 266
                       +K +        G      +  + P F + +        T P  TQ G
Sbjct: 24  QIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFG 83

Query: 267 VEYIAIC 273
              I + 
Sbjct: 84  YHIIKVL 90


>gi|170682547|ref|YP_001746096.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli SMS-3-5]
 gi|170769831|ref|ZP_02904284.1| peptidyl-prolyl cis-trans isomerase C [Escherichia albertii
           TW07627]
 gi|218701311|ref|YP_002408940.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli IAI39]
 gi|300818755|ref|ZP_07098962.1| PPIC-type PPIASE domain protein [Escherichia coli MS 107-1]
 gi|300940009|ref|ZP_07154634.1| PPIC-type PPIASE domain protein [Escherichia coli MS 21-1]
 gi|331665422|ref|ZP_08366321.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli TA143]
 gi|331675247|ref|ZP_08375998.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli TA280]
 gi|170121269|gb|EDS90200.1| peptidyl-prolyl cis-trans isomerase C [Escherichia albertii
           TW07627]
 gi|170520265|gb|ACB18443.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli SMS-3-5]
 gi|218371297|emb|CAR19130.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia
           coli IAI39]
 gi|300455142|gb|EFK18635.1| PPIC-type PPIASE domain protein [Escherichia coli MS 21-1]
 gi|300528721|gb|EFK49783.1| PPIC-type PPIASE domain protein [Escherichia coli MS 107-1]
 gi|323964024|gb|EGB59514.1| ppic-type ppiase domain-containing protein [Escherichia coli M863]
 gi|327250628|gb|EGE62334.1| peptidyl-prolyl cis-trans isomerase C [Escherichia coli STEC_7v]
 gi|331057320|gb|EGI29309.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli TA143]
 gi|331067533|gb|EGI38937.1| peptidyl-prolyl cis-trans isomerase C (PPIase C)(Rotamase C)
           (Parvulin) [Escherichia coli TA280]
          Length = 93

 Score = 59.3 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 17/67 (25%), Gaps = 1/67 (1%)

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKG 266
                       +K +        G      +  + P F + +        T P  TQ G
Sbjct: 24  QIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFG 83

Query: 267 VEYIAIC 273
              I + 
Sbjct: 84  YHIIKVL 90


>gi|108563069|ref|YP_627385.1| hypothetical protein HPAG1_0644 [Helicobacter pylori HPAG1]
 gi|107836842|gb|ABF84711.1| hypothetical protein HPAG1_0644 [Helicobacter pylori HPAG1]
          Length = 414

 Score = 59.3 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 84/288 (29%), Gaps = 35/288 (12%)

Query: 34  KSWAMSSRIR----TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
            +  +  ++       +NG  IT   I +       Q+ +   +  A   LI E +K QE
Sbjct: 150 ANSTLEDKVVGGISLLVNGSPITLYQIQEE------QEKSKVSKAQARDRLIAERIKNQE 203

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
           IE+  I  D + ++      A+  G+  + F   L  +G     ++  L       ++++
Sbjct: 204 IERLKIHVDDDKLDQEMAMMAQQQGMDLDHFKQMLMAEGHYKL-YRDQLKEHLEMQELLR 262

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
           N  +        E    +   K+                    ++               
Sbjct: 263 NILLTNVDTSS-ETKMREYYNKHKEQFSIPTEIETVRYTSTSQEDLERAMADPNLEIPGV 321

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY 269
            +  +                       +++      Q  +   Q + T       G   
Sbjct: 322 SKANEKIE--------------------MKTLNPQIAQVFISHEQGSFTPVMNGGGGQFI 361

Query: 270 ---IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              I     ++       K +++ +      +K   E+ +KLR  + I
Sbjct: 362 TFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEKLRVKSRI 409


>gi|28900288|ref|NP_799943.1| peptidyl-prolyl cis-trans isomerase C [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260364362|ref|ZP_05777010.1| peptidyl-prolyl cis-trans isomerase C [Vibrio parahaemolyticus
           K5030]
 gi|260880855|ref|ZP_05893210.1| peptidyl-prolyl cis-trans isomerase C [Vibrio parahaemolyticus
           AN-5034]
 gi|260895998|ref|ZP_05904494.1| peptidyl-prolyl cis-trans isomerase C [Vibrio parahaemolyticus
           Peru-466]
 gi|28808599|dbj|BAC61776.1| peptidyl-prolyl cis-trans isomerase C [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308087035|gb|EFO36730.1| peptidyl-prolyl cis-trans isomerase C [Vibrio parahaemolyticus
           Peru-466]
 gi|308091575|gb|EFO41270.1| peptidyl-prolyl cis-trans isomerase C [Vibrio parahaemolyticus
           AN-5034]
 gi|308113698|gb|EFO51238.1| peptidyl-prolyl cis-trans isomerase C [Vibrio parahaemolyticus
           K5030]
          Length = 93

 Score = 59.3 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 25/77 (32%), Gaps = 4/77 (5%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +++ +D  +   +  K     +K+++       G         + PQF  +         
Sbjct: 15  KEQAEDIIKQLKKGAKFQTLAKKYSTCPSGKRGGDLGEFRRGQMVPQFDKV--CFSGEVL 72

Query: 259 NP--YVTQKGVEYIAIC 273
            P    T+ G   + + 
Sbjct: 73  TPHLVKTKFGWHVVKVL 89


>gi|169825702|ref|YP_001695860.1| hypothetical protein Bsph_0092 [Lysinibacillus sphaericus C3-41]
 gi|168990190|gb|ACA37730.1| Hypothetical yacD protein [Lysinibacillus sphaericus C3-41]
          Length = 323

 Score = 59.3 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/303 (10%), Positives = 79/303 (26%), Gaps = 36/303 (11%)

Query: 6   FTSLSDFIKLLTTYFV--LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL 63
                  + ++    +  ++ F    I +      S      I+G+VIT  +    +   
Sbjct: 24  RLKTKPALAVIAVLLLGNILWFIGWVIPNKGQEIGSDEQVAAIDGDVITRQEWMIAM--- 80

Query: 64  KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
                     K  +Q L+ ET+ ++  +   I      ++                    
Sbjct: 81  -----EERYGKETLQSLVNETVMEKAAKTYKIKVTDQEIDLELALMRS------AQDKFD 129

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
              Q +     +Q +  Q I   V+  D +       +E    + +    T   Y    +
Sbjct: 130 TAMQNLTAEQLRQKIRSQLILDKVLTKDVV--INEESIEKYYEENQGLYNTKTSYRTNFI 187

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESD- 241
                          +K   +A               + +         G   +L E+  
Sbjct: 188 E-----------VDAKKAADEALGELKNGSDFSVLAREISLDSASASLGGDVGFLTENQE 236

Query: 242 --LHPQFQNLLKKSQNNTTNPYVTQKGVE-YIAICDKRDLGGE--IALKAYLSAQNTPTK 296
                    +     N  +  +    G    + + +  +        +K ++  +    +
Sbjct: 237 NVDPAIINAVKSTKVNEVSKAFKLDNGHYGIVQVQEILEGQSFTYDDVKEHIERELALEQ 296

Query: 297 IEK 299
           + +
Sbjct: 297 LPQ 299


>gi|242247195|ref|NP_001156231.1| dodo-like [Acyrthosiphon pisum]
 gi|239793486|dbj|BAH72856.1| ACYPI007002 [Acyrthosiphon pisum]
          Length = 163

 Score = 59.3 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 12/104 (11%), Positives = 23/104 (22%), Gaps = 1/104 (0%)

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
           Q    +   E   R   +            +       E+            +K++    
Sbjct: 56  QCSHLLVKHEKSRRPSSWREERITRSKSEAIDIIKSYREQIVSGKASFAELAQKYSDCSS 115

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
               G         +   F++          + P  T  GV  I
Sbjct: 116 AKRGGDLGPFTRGTMQKPFEDASFALKIGELSEPIHTDSGVHII 159


>gi|325208828|gb|ADZ04280.1| conserved hypothetical protein [Neisseria meningitidis NZ-05/33]
          Length = 288

 Score = 59.3 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/301 (10%), Positives = 78/301 (25%), Gaps = 17/301 (5%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +  +  +    S  +         T+NG+ I    I  ++A  + +    E    
Sbjct: 1   MKAKILTSVALLACSGSLFAQT-----LATVNGQKIDSSVIDAQVAAFRAENSRAEDTPQ 55

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
             Q L+   +    + +       +    F    A+    + +                K
Sbjct: 56  LRQSLLENEVVNTVVAQEVKRLKLDRSAEFKNALAKLRAEAKKSGDDKKPSFKTVWQAVK 115

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
                  +  +             E EI A    +         ++         +   +
Sbjct: 116 YG-----LNGEAYALHIAKTQPVSEQEIKAAYDNISGFYKGTQEVQLGEILTDKEENAKK 170

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN 255
                + K   ++ L+     ++ ++  + +  V +       E  + P +Q +    + 
Sbjct: 171 AVADLKAKKGFDAVLKQYSLNDRTKQTGAPVGYVPLKDL----EQGVPPLYQAIKDLKKG 226

Query: 256 NTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             T  P           + D R++         +  Q       +     V  L   A I
Sbjct: 227 EFTATPLKNGDFYGVYYVNDSREVKV--PSFDEMKGQIAGNLQAERIDRAVGALLGKANI 284

Query: 315 H 315
            
Sbjct: 285 K 285


>gi|330842375|ref|XP_003293155.1| hypothetical protein DICPUDRAFT_157953 [Dictyostelium purpureum]
 gi|325076555|gb|EGC30332.1| hypothetical protein DICPUDRAFT_157953 [Dictyostelium purpureum]
          Length = 252

 Score = 59.3 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 61/226 (26%), Gaps = 15/226 (6%)

Query: 47  NGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF 106
           NGEVI   DISK      +   N ++  + +              +          + F+
Sbjct: 38  NGEVINQIDISKEK--YTVFGRNSDVSNVVLDH-------PSVSRRHAALVYHGVNDRFY 88

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
           +    +   +  +                 +    S    V+KN   ++   L+      
Sbjct: 89  LIDLNSAEGTMVNNEKIKPTTPTTVKEGFTFSFASSSKQFVLKNTAPVRAPTLQE----- 143

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
            +    +           +   +     +  + + ++  +       K  +  +K++   
Sbjct: 144 VRCRHLLVKHRGSRNPSSWRETNITRTKEEAIAQLLEYKKMIDSGKNKFEDLAKKYSDCS 203

Query: 227 HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                G   +     +   F+N          ++   T  GV  I 
Sbjct: 204 SAKRGGDLGHFKRGQMQKPFENCSFSLQVGQISDIVDTDSGVHIIQ 249


>gi|163859314|ref|YP_001633612.1| peptidylprolyl isomerase family protein [Bordetella petrii DSM
           12804]
 gi|163263042|emb|CAP45345.1| Peptidylprolyl isomerase family protein [Bordetella petrii]
          Length = 248

 Score = 59.3 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/276 (9%), Positives = 66/276 (23%), Gaps = 47/276 (17%)

Query: 44  TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
             +NG  + D D+ +    L         ++ A+  L++  +   E  + G   ++   +
Sbjct: 3   VIVNGVELNDADLEQE---LPNHGDAANPQRRAITALVLRRVMLDEARRLG--LNAENDD 57

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
                   +   + E   +   +              + +  D +      +     +  
Sbjct: 58  AAIDALLDSQAATPEPDDAACRRHYEMHPERFTV--GELVEADHILFQVTPQVDLQRLRE 115

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
            A     +                                          +        +
Sbjct: 116 RAEAALQQAQAEP------------------------------------ERFAELARALS 139

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP--YVTQKGVEYIAICDK--RDLG 279
           +       G    L   D  P+F+  +      T  P    T+ G+  + I       L 
Sbjct: 140 NCPSAAVGGSLGQLGRGDTVPEFERAVFGQPAGTVLPRLVETRHGLHIVRIVRHVAGRLL 199

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
               +   ++        +    +Y + L   A I 
Sbjct: 200 PYEQVAPRIAQALAAASRDTAWRQYTRMLVGRARIE 235


>gi|307200199|gb|EFN80493.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
           [Harpegnathos saltator]
          Length = 151

 Score = 59.3 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 9/92 (9%), Positives = 22/92 (23%), Gaps = 1/92 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R   +   +     +  ++      E+             K++        G        
Sbjct: 57  RPSSWREDNITRSKEEALELVKSFREQIASGKATFAELASKYSDCSSAKRGGDLGPFSRG 116

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
            +   F+           ++P  T  G+  I 
Sbjct: 117 AMQKPFEQAAFALKVGELSSPVHTDSGIHIIQ 148


>gi|255036260|ref|YP_003086881.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dyadobacter
           fermentans DSM 18053]
 gi|254949016|gb|ACT93716.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dyadobacter
           fermentans DSM 18053]
          Length = 774

 Score = 59.3 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/198 (9%), Positives = 42/198 (21%), Gaps = 11/198 (5%)

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I +        K             ++    +  +      S      +           
Sbjct: 56  IDDYQDSYNKNKFASDSTKALSPEEYLPLYTDLKIKVLQARSEGKDTTLDYREEIASYRD 115

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           Q     +V  D + K      +          +         ++    D    +     +
Sbjct: 116 QLAKNHLVDKDLVEKLTTEAYD---------RLKQEVRASHILVGVSEDASPADTLEAHR 166

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSI-GKAQYLLESD-LHPQFQNLLKKSQNNTT 258
                           +   +F+      +  G   Y      L+P             +
Sbjct: 167 AAIALRGRLEEGSDFADMASRFSKDPAAKTTRGDLGYFTAFQTLYPIETAAYTLPVGKIS 226

Query: 259 NPYVTQKGVEYIAICDKR 276
            P  T+ G   I + D+R
Sbjct: 227 QPVRTKAGYHLIKVNDRR 244



 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/287 (10%), Positives = 61/287 (21%), Gaps = 27/287 (9%)

Query: 52  TDGDISKRIALLKLQKIN---------GELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
           T  D  + IA  + Q             +L   A   L  E      +            
Sbjct: 102 TTLDYREEIASYRDQLAKNHLVDKDLVEKLTTEAYDRLKQEVRASHILVGVSEDASPADT 161

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------- 149
                      G   E             +   +       +    +             
Sbjct: 162 LEAHRAAIALRGRLEEGSDFADMASRFSKDPAAKTTRGDLGYFTAFQTLYPIETAAYTLP 221

Query: 150 -NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
                                 +       +   ++          +   + RI +A   
Sbjct: 222 VGKISQPVRTKAGYHLIKVNDRRTNRGMVRVAHIMVTVDTAGTPAQKESAKTRIDEAYAQ 281

Query: 209 RLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQK 265
                +    +EKF+       + G         + P+ +          + + P +T  
Sbjct: 282 LQAGDEWNLVVEKFSDDRESRKNGGLLPLFGTGQMVPEIEEAAFALTRPQSYSKPVLTMY 341

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY-VKKLRSN 311
           G   I + +KR +     +   L  +       K   +    +LR  
Sbjct: 342 GWHIIRLIEKRPIETFANMAPALRKKVVTDSRGKVIEQANATRLRKK 388


>gi|160882390|ref|ZP_02063393.1| hypothetical protein BACOVA_00339 [Bacteroides ovatus ATCC 8483]
 gi|156112203|gb|EDO13948.1| hypothetical protein BACOVA_00339 [Bacteroides ovatus ATCC 8483]
          Length = 516

 Score = 59.3 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/290 (6%), Positives = 74/290 (25%), Gaps = 40/290 (13%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           ++   + +     +A    +   +NG  I   +                           
Sbjct: 7   LLLGCISLFVVAVFAQEDPVLMRVNGREILRSEFE------------------------- 41

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
                    +     ++   +  +      + L  E   +            ++    + 
Sbjct: 42  -----YAYRRYAERSNARLSSKEYAALFAQSKLKVEAARAAGLDTTSVFRKQQEKCRTEL 96

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           +   ++    M        +    K +   + V +   R        +  + +  +    
Sbjct: 97  VESYLIDRQVMDSCARAIYQKMGLKARSGRVQVMQIFKRLPQTITSRHLEEEKTRMDSIY 156

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL-ESDLHPQFQNLLKKSQNNTTNPY 261
           +  +            +E ++            ++                ++   + P+
Sbjct: 157 RMIQNQPD--LNFNRLVEIYSDDKQSR------WIECLETTSEFENVAFSLAKGMASQPF 208

Query: 262 VTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK-IEKHEAEYVKKLRS 310
            T +G+  + + D+ +      + A L  +    + ++K     +++L+ 
Sbjct: 209 FTPEGIHILKVMDREETAAYENVSARLMERLRRKEILDKGTGAVLERLKK 258


>gi|255079356|ref|XP_002503258.1| peptidyl-prolyl cis-trans isomerase [Micromonas sp. RCC299]
 gi|226518524|gb|ACO64516.1| peptidyl-prolyl cis-trans isomerase [Micromonas sp. RCC299]
          Length = 216

 Score = 59.3 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 8/70 (11%), Positives = 20/70 (28%), Gaps = 1/70 (1%)

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
            +   +   ++        G         +  +F + +          P  TQ G   I 
Sbjct: 147 DRFAREAGNYSECPSKSKGGSLGTFKPGQMVKEFNDAVFNGPVGVIQGPVKTQFGYHLIL 206

Query: 272 ICDKRDLGGE 281
           + D+ +   +
Sbjct: 207 VTDRVEPEKK 216


>gi|149187216|ref|ZP_01865514.1| peptidyl-prolyl cis-trans isomerase C [Vibrio shilonii AK1]
 gi|148838752|gb|EDL55691.1| peptidyl-prolyl cis-trans isomerase C [Vibrio shilonii AK1]
          Length = 92

 Score = 59.3 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 9/75 (12%), Positives = 27/75 (36%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +++ +D  +   +  K     +K+++       G      +  + PQF  +    +    
Sbjct: 15  KEQAEDIIKQLKKGAKFQTLAKKYSTCPSGKKGGDLGEFRKGQMVPQFDKVCFSGETLVP 74

Query: 259 NPYVTQKGVEYIAIC 273
           +   T+ G   + + 
Sbjct: 75  HLVKTKFGWHVVKVL 89


>gi|15676260|ref|NP_273394.1| putative cell-binding factor [Neisseria meningitidis MC58]
 gi|121635519|ref|YP_975764.1| hypothetical protein NMC1825 [Neisseria meningitidis FAM18]
 gi|161870724|ref|YP_001599897.1| cell-binding factor, putative [Neisseria meningitidis 053442]
 gi|218768879|ref|YP_002343391.1| putative periplasmi hypothetical protein [Neisseria meningitidis
           Z2491]
 gi|254805619|ref|YP_003083840.1| Parvulin-like peptidyl-prolyl isomerase [Neisseria meningitidis
           alpha14]
 gi|304386526|ref|ZP_07368814.1| conserved hypothetical protein [Neisseria meningitidis ATCC 13091]
 gi|7225566|gb|AAF40788.1| putative cell-binding factor [Neisseria meningitidis MC58]
 gi|120867225|emb|CAM10994.1| putative periplasmi hypothetical protein [Neisseria meningitidis
           FAM18]
 gi|121052887|emb|CAM09239.1| putative periplasmi hypothetical protein [Neisseria meningitidis
           Z2491]
 gi|161596277|gb|ABX73937.1| cell-binding factor, putative [Neisseria meningitidis 053442]
 gi|254669161|emb|CBA07861.1| Parvulin-like peptidyl-prolyl isomerase [Neisseria meningitidis
           alpha14]
 gi|254670178|emb|CBA05266.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
           meningitidis alpha153]
 gi|254671970|emb|CBA04400.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
           meningitidis alpha275]
 gi|261391870|emb|CAX49329.1| conserved hypothetical periplasmic protein [Neisseria meningitidis
           8013]
 gi|304339355|gb|EFM05427.1| conserved hypothetical protein [Neisseria meningitidis ATCC 13091]
 gi|316984350|gb|EFV63324.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
 gi|319411180|emb|CBY91585.1| conserved hypothetical periplasmic protein [Neisseria meningitidis
           WUE 2594]
 gi|325128931|gb|EGC51785.1| hypothetical protein NMXN1568_0307 [Neisseria meningitidis N1568]
 gi|325130875|gb|EGC53605.1| hypothetical protein NMBOX9930304_0328 [Neisseria meningitidis
           OX99.30304]
 gi|325134926|gb|EGC57558.1| hypothetical protein NMBM13399_0343 [Neisseria meningitidis M13399]
 gi|325138885|gb|EGC61435.1| hypothetical protein NMBES14902_0329 [Neisseria meningitidis
           ES14902]
 gi|325140994|gb|EGC63500.1| hypothetical protein NMBCU385_0305 [Neisseria meningitidis CU385]
 gi|325143031|gb|EGC65383.1| hypothetical protein NMB9615945_0390 [Neisseria meningitidis
           961-5945]
 gi|325145140|gb|EGC67422.1| hypothetical protein NMBM01240013_0366 [Neisseria meningitidis
           M01-240013]
 gi|325198965|gb|ADY94421.1| conserved hypothetical protein [Neisseria meningitidis G2136]
 gi|325199539|gb|ADY94994.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
 gi|325202835|gb|ADY98289.1| conserved hypothetical protein [Neisseria meningitidis M01-240149]
 gi|325203458|gb|ADY98911.1| conserved hypothetical protein [Neisseria meningitidis M01-240355]
 gi|325205422|gb|ADZ00875.1| conserved hypothetical protein [Neisseria meningitidis M04-240196]
          Length = 288

 Score = 59.3 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/301 (10%), Positives = 78/301 (25%), Gaps = 17/301 (5%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +  +  +    S  +         T+NG+ I    I  ++A  + +    E    
Sbjct: 1   MKAKILTSVALLACSGSLFAQT-----LATVNGQKIDSSVIDAQVAAFRAENSRAEDTPQ 55

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
             Q L+   +    + +       +    F    A+    + +                K
Sbjct: 56  LRQSLLENEVVNTVVAQEVKRLKLDRSAEFKNALAKLRAEAKKSGDDKKPSFKTVWQAVK 115

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
                  +  +             E E+ A    +         ++         +   +
Sbjct: 116 YG-----LNGEAYALHIAKTQPVSEQEVKAAYDNISGFYKGTQEVQLGEILTDKEENAKK 170

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN 255
                + K   ++ L+     ++ ++  + +  V +       E  + P +Q +    + 
Sbjct: 171 AVADLKAKKGFDAVLKQYSLNDRTKQTGAPVGYVPLKDL----EQGVPPLYQAIKDLKKG 226

Query: 256 NTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             T  P           + D R++         +  Q       +     V  L   A I
Sbjct: 227 EFTATPLKNGDFYGVYYVNDSREVKV--PSFDEMKGQIAGNLQAERIDRAVGALLGKANI 284

Query: 315 H 315
            
Sbjct: 285 K 285


>gi|153000160|ref|YP_001365841.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS185]
 gi|160874787|ref|YP_001554103.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS195]
 gi|217973872|ref|YP_002358623.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS223]
 gi|304409751|ref|ZP_07391371.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS183]
 gi|307304107|ref|ZP_07583860.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           BA175]
 gi|151364778|gb|ABS07778.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS185]
 gi|160860309|gb|ABX48843.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS195]
 gi|217499007|gb|ACK47200.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS223]
 gi|304352269|gb|EFM16667.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS183]
 gi|306913005|gb|EFN43428.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           BA175]
 gi|315267025|gb|ADT93878.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS678]
          Length = 92

 Score = 59.3 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 9/78 (11%), Positives = 24/78 (30%), Gaps = 1/78 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           +++ +  ++  L            +S       G+        +  +F + +     N  
Sbjct: 14  EEQCQALKQQILEGADFAQIARAHSSCPSGAQGGELGSFGPGMMVREFDEVVFSAPLNEV 73

Query: 258 TNPYVTQKGVEYIAICDK 275
             P  TQ G   + +  +
Sbjct: 74  QGPVKTQFGFHLLEVTSR 91


>gi|126173880|ref|YP_001050029.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS155]
 gi|125997085|gb|ABN61160.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS155]
          Length = 92

 Score = 59.3 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 9/78 (11%), Positives = 24/78 (30%), Gaps = 1/78 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           +++ +  ++  L            +S       G+        +  +F + +     N  
Sbjct: 14  EEQCQALKQQILEGADFAQIARAHSSCPSGAQGGELGSFGPGMMVREFDEVVFSAPLNEV 73

Query: 258 TNPYVTQKGVEYIAICDK 275
             P  TQ G   + +  +
Sbjct: 74  QGPVKTQFGFHLLEVTSR 91


>gi|2246380|emb|CAB06699.1| peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana]
          Length = 221

 Score = 59.3 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/117 (11%), Positives = 41/117 (35%), Gaps = 3/117 (2%)

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN 259
           +   + ++  L   +  +   +++        G   ++    + P+F+    K++ N   
Sbjct: 31  ELFAELQKKFLDGEEMSDLAAEYSICPSKKDGGILGWVKLGQMVPEFEEAAFKAELNQVV 90

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
              TQ G+  + +  +R+   +I +   L ++             +  +R    I  
Sbjct: 91  RCRTQFGLHLLQVLSEREPVKDIQV-EELHSKMQDPVFMDEAQ--LIDVREPNEIEI 144


>gi|56118644|ref|NP_001008110.1| peptidylprolyl cis/trans isomerase, NIMA-interacting 1 [Xenopus
           (Silurana) tropicalis]
 gi|51895927|gb|AAH81312.1| peptidylprolyl cis/trans isomerase, NIMA-interacting 1 [Xenopus
           (Silurana) tropicalis]
          Length = 159

 Score = 59.3 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 8/106 (7%), Positives = 25/106 (23%), Gaps = 1/106 (0%)

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
             +    +       R   +            ++      ++ +       +   +F+  
Sbjct: 50  KVRCSHLLVKHNQSRRPSSWRQDRITRTKDEALEHINGYIQKIKSGDEDFESLASRFSDC 109

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
               + G         +   F++          + P  T  G+  I
Sbjct: 110 SSAKAGGDLGSFGRGAMQKPFEDASFALRPGEMSGPVFTDSGIHII 155


>gi|210608663|ref|ZP_03287940.1| hypothetical protein CLONEX_00119 [Clostridium nexile DSM 1787]
 gi|210152920|gb|EEA83926.1| hypothetical protein CLONEX_00119 [Clostridium nexile DSM 1787]
          Length = 344

 Score = 59.3 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/322 (7%), Positives = 77/322 (23%), Gaps = 21/322 (6%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           + +  K +  +       +V +    S+  +     T+ G+ I  G ++   A  +   I
Sbjct: 1   MRNLKKKVVVFATAASLAVVSMTGCASFENADT-VATVGGDKIPAG-VANFYARYQQGMI 58

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV----QHARNTGLSAEDFSSFL 124
              L  +    +  + + + +  +  +                  A    +  ++  S +
Sbjct: 59  ETNLGSMLGDNMWTQEVSEGKTYEDNVKDSVMDALQQMYILEDHMAEYEVVLTDEEKSAI 118

Query: 125 DKQGIGDNHFKQYLAIQSIWPDV-----------VKNDFMLKYGNLEMEIPANKQKMKNI 173
            +     +   +  A + +  +            ++               ++++  +  
Sbjct: 119 QEAAKKFDEGNELEAKELVSGETEYVERVLTLLTIQKKMTDAVTKDVSTEVSDEEAAQKS 178

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGK 233
                   T      ++K           + A           +       +  +     
Sbjct: 179 MQYVSFPYTTTDEEGNSKTLTDEEKAALKETAAAFLEGAKAAEDFAAYATEQGKEAQTAT 238

Query: 234 AQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNT 293
                 S                 T+   T+ G+    +    D     A K  +     
Sbjct: 239 FDSESTSPAAELIAAADSLGVGGFTDVIETENGLYVAKVTSLLDRDATDAKKETIVNSRK 298

Query: 294 PTKIEKHEAEYVKKLRSNAIIH 315
             K       +    + +  I 
Sbjct: 299 SEKFNGVYDGW----KKDTKIK 316


>gi|291550023|emb|CBL26285.1| PPIC-type PPIASE domain [Ruminococcus torques L2-14]
          Length = 351

 Score = 59.3 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/328 (6%), Positives = 73/328 (22%), Gaps = 36/328 (10%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVIT-----------DGDISKRIA 61
           +        +        ++      +     T+  E IT                   A
Sbjct: 4   LAKRLAVLAVAGTLTATSLTGCGTINTDETVATVGDEKITLGVANFYARLQQAQYENYYA 63

Query: 62  LLK--------------LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
            +                Q    + +K  ++ L    L  Q      +            
Sbjct: 64  SMMGTTAEEMWAKKASDDQTYEEQTKKRILENLENMYLVSQHASDYDVALTEEEQQAIKD 123

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
             A+    +++D    +           + + I +     ++          + +     
Sbjct: 124 AAAKFGEDNSDDVKKVVSGDEEEVAKVLELMTISNKMETAMEAGVDENV--SDEDAAQKS 181

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
            +    +           ++ D++ +      +   D  +    +    +     A    
Sbjct: 182 MQYLLFSYTTTDDSGKSQTLSDDEKEALKTTAQAFDDRLKGGEDMETVASAAGLTAQTAT 241

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY 287
             S          D           ++ + T+   T+ G+    +        +      
Sbjct: 242 FDS-----ESTSPDKDLIAAADALTNEGDVTDIIETENGIYIAKLTS----LLDREATDS 292

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                   + ++     +++ + +  I 
Sbjct: 293 KKESIVSERKQEQYDSLLEQWKKDTKIK 320


>gi|260777432|ref|ZP_05886326.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260607098|gb|EEX33372.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 92

 Score = 59.3 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 9/75 (12%), Positives = 27/75 (36%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +++ +D  +   +  K     +K+++       G      +  + PQF  +    +    
Sbjct: 15  KEQAEDIIKQLKKGAKFQTLAKKYSTCPSGKKGGDLGEFRKGQMVPQFDKVCFSGETLVP 74

Query: 259 NPYVTQKGVEYIAIC 273
           +   T+ G   + + 
Sbjct: 75  HLVKTKFGWHVVKVL 89


>gi|294461993|gb|ADE76552.1| unknown [Picea sitchensis]
          Length = 310

 Score = 59.3 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 10/107 (9%), Positives = 33/107 (30%), Gaps = 1/107 (0%)

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQ 264
            +          +   +++        G   ++ +  +  +F+     +  N      T+
Sbjct: 123 QQRIVREGVDLSDLATEYSICPSKEEGGMLGWVQKGQMVQEFEEAAFSAPLNKLVRCKTK 182

Query: 265 KGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            G   + +  +R+ G   A++     Q      +      +  +R +
Sbjct: 183 FGWHLLQVLSEREGGFLQAIEPE-ELQVKMQDADFITEAQLMDVRES 228


>gi|89901568|ref|YP_524039.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax
           ferrireducens T118]
 gi|89346305|gb|ABD70508.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax
           ferrireducens T118]
          Length = 263

 Score = 59.3 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 12/125 (9%), Positives = 35/125 (28%), Gaps = 4/125 (3%)

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLK 251
           N+           +      +        ++       G   +L+ +D  P+F  +    
Sbjct: 125 NRAETTLLDVRCHDGTGAEDRFAKAASTLSNCPSGAQGGHLGWLVAADCAPEFAKELFGH 184

Query: 252 KSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
                      ++ G+  + +  +         A++  ++             +Y++ L 
Sbjct: 185 TEVGVLPRLVHSRFGLHVVEVLAREPGAEQPFEAVRGAVAMSLRQKTYVTALRQYLQLLA 244

Query: 310 SNAII 314
             A I
Sbjct: 245 GQADI 249


>gi|151945094|gb|EDN63345.1| PPIase [Saccharomyces cerevisiae YJM789]
 gi|190409503|gb|EDV12768.1| ESS1 protein [Saccharomyces cerevisiae RM11-1a]
 gi|256269534|gb|EEU04819.1| Ess1p [Saccharomyces cerevisiae JAY291]
          Length = 170

 Score = 58.9 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 8/104 (7%), Positives = 26/104 (25%), Gaps = 1/104 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
            +           +          Q+     K +    +   +        ++ +     
Sbjct: 64  HILIKHKDSRRPASHRSENITISKQDATDELKTLITRLDDDSKTNSFEALAKERSDCSSY 123

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
              G   +    ++ P F++   +      ++   +  GV  I 
Sbjct: 124 KRGGDLGWFGRGEMQPSFEDAAFQLKVGEVSDIVESGSGVHVIK 167


>gi|37362669|ref|NP_012551.2| Ess1p [Saccharomyces cerevisiae S288c]
 gi|78099772|sp|P22696|ESS1_YEAST RecName: Full=Peptidyl-prolyl cis-trans isomerase ESS1;
           Short=PPIase ESS1; AltName: Full=Parvulin ESS1; AltName:
           Full=Processing/termination factor 1
 gi|758286|emb|CAA59961.1| Processing/Termination Factor 1 [Saccharomyces cerevisiae]
 gi|285812911|tpg|DAA08809.1| TPA: Ess1p [Saccharomyces cerevisiae S288c]
          Length = 170

 Score = 58.9 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 8/104 (7%), Positives = 26/104 (25%), Gaps = 1/104 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
            +           +          Q+     K +    +   +        ++ +     
Sbjct: 64  HILIKHKDSRRPASHRSENITISKQDATDELKTLITRLDDDSKTNSFEALAKERSDCSSY 123

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
              G   +    ++ P F++   +      ++   +  GV  I 
Sbjct: 124 KRGGDLGWFGRGEMQPSFEDAAFQLKVGEVSDIVESGSGVHVIK 167


>gi|1097162|prf||2113292A processing/termination factor
          Length = 170

 Score = 58.9 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 8/104 (7%), Positives = 26/104 (25%), Gaps = 1/104 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
            +           +          Q+     K +    +   +        ++ +     
Sbjct: 64  HILIKHKDSRRPASHRSENITISKQDATDELKTLITRLDDDSKTNSFEALAKERSDCSSY 123

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
              G   +    ++ P F++   +      ++   +  GV  I 
Sbjct: 124 KRGGDLGWFGRGEMQPSFEDAAFQLKVGEVSDIVESGSGVHVIK 167


>gi|298504944|gb|ADI83667.1| peptidylprolyl cis-trans isomerase, PpiC-type [Geobacter
           sulfurreducens KN400]
          Length = 92

 Score = 58.9 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 9/78 (11%), Positives = 22/78 (28%), Gaps = 1/78 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNT 257
           +      +       +  +   + +        G      +  +  +F +++     N  
Sbjct: 14  EAECLQLKSEIEAGAEFADVARRHSLCPSRAQGGDLGTFTQGQMVKEFDDIVFSGEINKV 73

Query: 258 TNPYVTQKGVEYIAICDK 275
             P  TQ G   I I  +
Sbjct: 74  LGPVRTQFGYHLIEITKR 91


>gi|66563115|ref|XP_624205.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
           [Apis mellifera]
          Length = 162

 Score = 58.9 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 9/92 (9%), Positives = 22/92 (23%), Gaps = 1/92 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R   +   +     +  ++      E+             K++        G        
Sbjct: 68  RPSSWREENITRSKEEALELIKSYREQIVSGKVTFAELASKYSDCSSAKRGGDLGPFSRG 127

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
            +   F+           ++P  T  G+  I 
Sbjct: 128 AMQKPFEQAAFALKVGELSSPVHTDSGIHIIQ 159


>gi|237719063|ref|ZP_04549544.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_2_4]
 gi|229451442|gb|EEO57233.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_2_4]
          Length = 514

 Score = 58.9 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/290 (6%), Positives = 74/290 (25%), Gaps = 40/290 (13%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           ++   + +     +A    +   +NG  I   +                           
Sbjct: 5   LLLGCISLFVVAVFAQEDPVLIRVNGREILRSEFE------------------------- 39

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
                    +     ++   +  +      + L  E   +            ++    + 
Sbjct: 40  -----YAYRRYAERSNARLSSKEYAALFAQSKLKVEAARAAGLDTTSVFRKQQEKCRTEL 94

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           +   ++    M        +    K +   + V +   R        +  + +  +    
Sbjct: 95  VESYLIDRQVMDSCARAIYQKMGLKARSGRVQVMQIFKRLPQTITSRHLEEEKTRMDSIY 154

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL-ESDLHPQFQNLLKKSQNNTTNPY 261
           +  +            +E ++            ++                ++   + P+
Sbjct: 155 RMIQNQPD--LNFNRLVEIYSDDKQSR------WIECLETTSEFENVAFSLAKGMASQPF 206

Query: 262 VTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK-IEKHEAEYVKKLRS 310
            T +G+  + + D+ +      + A L  +    + ++K     +++L+ 
Sbjct: 207 FTPEGIHILKVMDREETAAYENVSARLMERLRRKEILDKGTGAVLERLKK 256


>gi|146313640|ref|YP_001178714.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterobacter sp.
           638]
 gi|145320516|gb|ABP62663.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterobacter sp.
           638]
          Length = 93

 Score = 58.9 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +K   D  E            +K ++       G      +  + P F + +      
Sbjct: 13  KEEKLALDLLEQIKNGADFEKLAKKHSTCPSGKKGGHLGEFRQGQMVPAFDKVVFSCPVL 72

Query: 256 NTTNPYVTQKGVEYIAIC 273
             T P  TQ G   I + 
Sbjct: 73  EPTGPLHTQFGYHIIKVL 90


>gi|59801983|ref|YP_208695.1| hypothetical protein NGO1656 [Neisseria gonorrhoeae FA 1090]
 gi|194099536|ref|YP_002002666.1| Cell-binding factor, putative [Neisseria gonorrhoeae NCCP11945]
 gi|239999742|ref|ZP_04719666.1| Cell-binding factor, putative [Neisseria gonorrhoeae 35/02]
 gi|240014900|ref|ZP_04721813.1| Cell-binding factor, putative [Neisseria gonorrhoeae DGI18]
 gi|240017348|ref|ZP_04723888.1| Cell-binding factor, putative [Neisseria gonorrhoeae FA6140]
 gi|240081490|ref|ZP_04726033.1| Cell-binding factor, putative [Neisseria gonorrhoeae FA19]
 gi|240113770|ref|ZP_04728260.1| Cell-binding factor, putative [Neisseria gonorrhoeae MS11]
 gi|240116505|ref|ZP_04730567.1| Cell-binding factor, putative [Neisseria gonorrhoeae PID18]
 gi|240118728|ref|ZP_04732790.1| Cell-binding factor, putative [Neisseria gonorrhoeae PID1]
 gi|240121970|ref|ZP_04734932.1| Cell-binding factor, putative [Neisseria gonorrhoeae PID24-1]
 gi|240124267|ref|ZP_04737223.1| Cell-binding factor, putative [Neisseria gonorrhoeae PID332]
 gi|240126477|ref|ZP_04739363.1| Cell-binding factor, putative [Neisseria gonorrhoeae SK-92-679]
 gi|240128940|ref|ZP_04741601.1| Cell-binding factor, putative [Neisseria gonorrhoeae SK-93-1035]
 gi|254494530|ref|ZP_05107701.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|260439738|ref|ZP_05793554.1| Cell-binding factor, putative [Neisseria gonorrhoeae DGI2]
 gi|268595556|ref|ZP_06129723.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268597591|ref|ZP_06131758.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268599842|ref|ZP_06134009.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268602176|ref|ZP_06136343.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268604442|ref|ZP_06138609.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268682896|ref|ZP_06149758.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268685062|ref|ZP_06151924.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268687326|ref|ZP_06154188.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291042988|ref|ZP_06568726.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293398329|ref|ZP_06642520.1| cell-binding factor [Neisseria gonorrhoeae F62]
 gi|59718878|gb|AAW90283.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|193934826|gb|ACF30650.1| Cell-binding factor, putative [Neisseria gonorrhoeae NCCP11945]
 gi|226513570|gb|EEH62915.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268548945|gb|EEZ44363.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268551379|gb|EEZ46398.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268583973|gb|EEZ48649.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268586307|gb|EEZ50983.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268588573|gb|EEZ53249.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268623180|gb|EEZ55580.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268625346|gb|EEZ57746.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268627610|gb|EEZ60010.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291013127|gb|EFE05096.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291611253|gb|EFF40337.1| cell-binding factor [Neisseria gonorrhoeae F62]
          Length = 288

 Score = 58.9 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/301 (10%), Positives = 77/301 (25%), Gaps = 17/301 (5%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +  +  +    S  +         T+NG+ I    I  ++A  + +    E    
Sbjct: 1   MKAKILTSVALLACSGSLFAQT-----LATVNGQKIDSSVIDAQVAAFRAENSRAEDTPQ 55

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
             Q L+   +    + +       +    F    A+    + +                K
Sbjct: 56  LRQSLLENEVVNTVVAQEVKRLKLDRSAEFKDALAKLRAEAKKSGDDKKPSFKTVWQAVK 115

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
                  +  +             E E+ A    +         ++         +   +
Sbjct: 116 YG-----LNGEAYALHIAKTQPVSEQEVKAVYDNISGFYKGTQEVQLGEILTDKEENAKK 170

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN 255
                + K   ++ L+     ++ ++  +    V +       E  + P +Q +    + 
Sbjct: 171 AVADLKAKKGFDAVLKQYSLNDRTKRTGAPDGYVPLKDL----EQGVPPLYQAIKDLKKG 226

Query: 256 NTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             T  P           + D R++         +  Q       +     V  L   A I
Sbjct: 227 EFTATPLKNGDFYGVYYVNDSREVKV--PSFDEMKGQIAGNLQAERIDRAVGALLGKANI 284

Query: 315 H 315
            
Sbjct: 285 K 285


>gi|317181972|dbj|BAJ59756.1| hypothetical protein HPF57_0682 [Helicobacter pylori F57]
          Length = 411

 Score = 58.9 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 89/289 (30%), Gaps = 37/289 (12%)

Query: 34  KSWAMSSRIR----TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
               +  ++       +NG  IT   I +       Q+ +   +  A   LI E +K QE
Sbjct: 147 AGSTLEDKVVGGISLLVNGSPITLYQIQEE------QEKSKVSKAQARDRLIAERIKNQE 200

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
           IE+  I  D + ++      A+  G+  + F   L  +G     ++  L       ++++
Sbjct: 201 IERLKIHVDDDKLDQEMAMMAQQQGMDLDHFKQMLMAEGHYKL-YRDQLKEHLEMQELLR 259

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
           N  +                              +         NQ  +++ + +     
Sbjct: 260 NILLTNVDTSSETKMREYYNKHKEQFSIPTEIETVRY----TSTNQEDLERAMSNPNLEV 315

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKG--- 266
             + K   K                  +    L+PQ   +    +  +  P +   G   
Sbjct: 316 PGVSKANEK------------------IEMKTLNPQIAQVFISHEQGSFTPIMNGGGGQF 357

Query: 267 -VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              YI     ++       K +++ +      +K   E+ +KLR  + I
Sbjct: 358 ITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEKLRVKSRI 406


>gi|260172003|ref|ZP_05758415.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D2]
 gi|315920316|ref|ZP_07916556.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D2]
 gi|313694191|gb|EFS31026.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D2]
          Length = 515

 Score = 58.9 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/290 (6%), Positives = 74/290 (25%), Gaps = 40/290 (13%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           ++   + +     +A    +   +NG  I   +                           
Sbjct: 6   LLLGCISLFVVAVFAQEDPVLMRVNGREILRSEFE------------------------- 40

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
                    +     ++   +  +      + L  E   +            ++    + 
Sbjct: 41  -----YAYRRYAERSNARLSSKEYAALFAQSKLKVEAARAAGLDTTSVFRKQQEKCRTEL 95

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           +   ++    M        +    K +   + V +   R        +  + +  +    
Sbjct: 96  VESYLIDRQVMDSCARAIYQKMGLKARSGRVQVMQIFKRLPQTITSRHLEEEKTRMDSIY 155

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL-ESDLHPQFQNLLKKSQNNTTNPY 261
           +  +            +E ++            ++                ++   + P+
Sbjct: 156 RMIQNQPD--LNFNRLVEIYSDDKQSR------WIECLETTSEFENVAFSLAKGMASQPF 207

Query: 262 VTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK-IEKHEAEYVKKLRS 310
            T +G+  + + D+ +      + A L  +    + ++K     +++L+ 
Sbjct: 208 FTPEGIHILKVMDREETAAYENVSARLMERLRRKEILDKGAGAVLERLKK 257


>gi|116696205|ref|YP_841781.1| peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16]
 gi|113530704|emb|CAJ97051.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16]
          Length = 250

 Score = 58.9 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 14/155 (9%), Positives = 45/155 (29%), Gaps = 5/155 (3%)

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
            + +  +           +LF +      +    +   +     R             ++
Sbjct: 84  YDSRPERFRDGEWVEADHILFQVTPRVPLD-ALREIAAQTLALVRGDPSTFPEHARALSN 142

Query: 225 KIHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLG--G 280
                + G+   +   +  P+F+  L   +      +   T+ G+  + + ++       
Sbjct: 143 CPSGANGGRLGRVFRGETAPEFERALFAAQQDGVLPHLLETRYGLHIVRVLERCPGTRLP 202

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
             A++  ++        ++   +Y   L   A I 
Sbjct: 203 FDAVRGDIARALASAARDRAWKQYASLLIGRARIE 237


>gi|311106144|ref|YP_003978997.1| PPIC-type PPIASE domain-containing protein 2 [Achromobacter
           xylosoxidans A8]
 gi|310760833|gb|ADP16282.1| PPIC-type PPIASE domain protein 2 [Achromobacter xylosoxidans A8]
          Length = 253

 Score = 58.9 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/276 (10%), Positives = 69/276 (25%), Gaps = 47/276 (17%)

Query: 44  TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
             +NG  + D D+ +    L      G   + A+  L++  +   E  + G   D+    
Sbjct: 3   VIVNGVELNDADLERE---LPPHAEAGNPMREAITALVLRRVLLDEAGRLG--LDAADEE 57

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
                       + E   +   +          ++A + I  D +            +  
Sbjct: 58  GAIGALLAREAPAPEADEAACRRYYQMHPQR--FMAGELIEADHILFQVTPGVNLDML-- 113

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
                                                      E      +      + +
Sbjct: 114 ----------------------------------RAHANVVLAELLEDPSRFAEVAREQS 139

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKRD--LG 279
           +       G    L   D  P+F+  +    +         T+ G+  + +  + +  + 
Sbjct: 140 NCPSAALGGSLGQLGRGDTVPEFERAVFALPAGGLLPQLLETRHGLHIVRVTRRIEGRMQ 199

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
               + A ++   +    +    +Y K L   A I 
Sbjct: 200 PYEHVAAQIATALSSMSRDTAWRQYAKLLVERADIQ 235


>gi|319760272|ref|YP_004124210.1| chaperone surA [Candidatus Blochmannia vafer str. BVAF]
 gi|318038986|gb|ADV33536.1| chaperone surA [Candidatus Blochmannia vafer str. BVAF]
          Length = 433

 Score = 58.9 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 99/293 (33%), Gaps = 15/293 (5%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKL--------QKINGELEKIAVQELIVE 83
           +Y     + +    +N  +I   D+  +I ++KL           +  L KIA+++LI +
Sbjct: 19  TYSILQTTDKTVALVNNAIILHSDLLNKINIIKLNPFNSPDHLTKDKYLYKIALEQLITD 78

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            L  Q   K  I  + N +++      ++  ++   F S L+K G+    +   +  + +
Sbjct: 79  HLITQVANKKNININYNQIDHIIDHITQSRNMTHTQFLSHLNKYGLNYTQYSSEIYQEIL 138

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNI--TVREYLIRTVLFSIPDNKLQNQGFVQKR 201
              +  +           EI    Q+   +    +  L+  ++        Q        
Sbjct: 139 NKVICNHAICQHINISSYEINDIIQQSNFVDFKKKFKLMHIIIELPIYPSSQQINSYNNL 198

Query: 202 IKDAEESRLRLPKDCNKLEKFASKI--HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTT 258
            +   +         + +  + S      +++ K  ++   ++   F          +  
Sbjct: 199 SRLLIKKIESKTNAQDLIYTYYSNNIFPRITVKKTSWISWQNIPMIFDQSLQSAKPGDVI 258

Query: 259 NPYVTQKGVEYIAICDK-RDLGGEIALKAYLSAQNTPTKIEKHE-AEYVKKLR 309
            P  +  G+  +AI D          ++  +++        +    + + +L+
Sbjct: 259 GPIHSYDGIHILAIQDILDKQHTFPIIRVKINSILFKHVSNEQYIKKQLLQLK 311



 Score = 45.8 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 32/276 (11%), Positives = 80/276 (28%), Gaps = 14/276 (5%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT---VNYFFV 107
           I+  +I+  I          + +   +  +I+E       ++     + +          
Sbjct: 153 ISSYEINDIIQQSNFVDFKKKFK---LMHIIIELPIYPSSQQINSYNNLSRLLIKKIESK 209

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND-------FMLKYGNLE 160
            +A++   +    + F        +              +                G   
Sbjct: 210 TNAQDLIYTYYSNNIFPRITVKKTSWISWQNIPMIFDQSLQSAKPGDVIGPIHSYDGIHI 269

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
           + I     K     +    I ++LF    N+   +  + +   + E  R        +  
Sbjct: 270 LAIQDILDKQHTFPIIRVKINSILFKHVSNEQYIKKQLLQLKTELENHRTTFDIVLKEKS 329

Query: 221 KFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           K     +   + +   L   DL  Q ++LL   +N  ++P         I + D + +  
Sbjct: 330 KNFYSENYDHLEQWIDLDHFDLSVQ-KSLLALKKNQISDPIYIFNKWGIIKLIDIKKVNY 388

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
              ++          K  +    +++KL+S + I  
Sbjct: 389 SEIIRERAYLFLLSQKYNETLNNWIQKLKSESYIKI 424


>gi|261250951|ref|ZP_05943525.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio orientalis CIP
           102891]
 gi|260937824|gb|EEX93812.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio orientalis CIP
           102891]
          Length = 92

 Score = 58.9 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 9/75 (12%), Positives = 26/75 (34%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +++ +D  +   +  K     +K+++       G         + PQF  +    +    
Sbjct: 15  KEQAEDIIKQLKKGAKFQTLAKKYSTCPSGKKGGDLGEFRRGQMVPQFDKVCFSGETLVP 74

Query: 259 NPYVTQKGVEYIAIC 273
           +   T+ G   + + 
Sbjct: 75  HLVKTKFGWHVVKVL 89


>gi|255656245|ref|ZP_05401654.1| putative protein export chaperone [Clostridium difficile QCD-23m63]
          Length = 140

 Score = 58.9 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 9/122 (7%), Positives = 36/122 (29%), Gaps = 7/122 (5%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQN 255
            ++K  ++  +            +K++      S G   +  +  +   F+       + 
Sbjct: 14  ELKKEAEEILKKAQAGEDFATLAKKYSEDSSAESGGDLGFFGKGQMVESFEKAAFALKKG 73

Query: 256 NTT-NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             +     +  G   I   D++           + +    +   + ++  ++ L+    +
Sbjct: 74  EVSNKLVESDYGYHIIKKTDEKYQP-----FEEIKSDLVSSLTSEKQSLLIQNLKEKYNV 128

Query: 315 HY 316
             
Sbjct: 129 KI 130


>gi|323347922|gb|EGA82182.1| Ess1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 170

 Score = 58.9 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 8/104 (7%), Positives = 26/104 (25%), Gaps = 1/104 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
            +           +          Q+     K +    +   +        ++ +     
Sbjct: 64  HILIKHKXSRRPASHRSENITISKQDATDELKTLITRLDDDSKTNSFEALAKERSDCSSY 123

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
              G   +    ++ P F++   +      ++   +  GV  I 
Sbjct: 124 KRGGDLGWFGRGEMQPSFEDAAFQLKVGEVSDIVESGSGVHVIK 167


>gi|323304351|gb|EGA58124.1| Ess1p [Saccharomyces cerevisiae FostersB]
          Length = 170

 Score = 58.9 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 8/104 (7%), Positives = 26/104 (25%), Gaps = 1/104 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
            +           +          Q+     K +    +   +        ++ +     
Sbjct: 64  HILIKHKXSRRPASHRSENITISKQDATDELKTLITRLDDDSKTNSFEALAKERSDCSSY 123

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
              G   +    ++ P F++   +      ++   +  GV  I 
Sbjct: 124 KRGGDLGWFGRGEMQPSFEDAAFQLKVGEVSDIVESGSGVHVIK 167


>gi|15601706|ref|NP_233337.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121586688|ref|ZP_01676472.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae 2740-80]
 gi|121726404|ref|ZP_01679678.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae V52]
 gi|147672166|ref|YP_001215127.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae O395]
 gi|153212171|ref|ZP_01947966.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae 1587]
 gi|153801415|ref|ZP_01956001.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae MZO-3]
 gi|153818331|ref|ZP_01970998.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae NCTC 8457]
 gi|153821043|ref|ZP_01973710.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae B33]
 gi|153824744|ref|ZP_01977411.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae MZO-2]
 gi|153827820|ref|ZP_01980487.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae 623-39]
 gi|227812519|ref|YP_002812529.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae M66-2]
 gi|229505907|ref|ZP_04395416.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae BX
           330286]
 gi|229510239|ref|ZP_04399719.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae B33]
 gi|229514365|ref|ZP_04403826.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae TMA 21]
 gi|229517631|ref|ZP_04407076.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae RC9]
 gi|229522478|ref|ZP_04411894.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae TM
           11079-80]
 gi|229526497|ref|ZP_04415901.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae bv.
           albensis VL426]
 gi|229528148|ref|ZP_04417539.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae 12129(1)]
 gi|229605439|ref|YP_002876143.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae MJ-1236]
 gi|254224743|ref|ZP_04918359.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae V51]
 gi|254284579|ref|ZP_04959546.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae AM-19226]
 gi|254850119|ref|ZP_05239469.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae MO10]
 gi|255746306|ref|ZP_05420253.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholera CIRS 101]
 gi|262158187|ref|ZP_06029305.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae INDRE
           91/1]
 gi|262169214|ref|ZP_06036907.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae RC27]
 gi|262191931|ref|ZP_06050098.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae CT
           5369-93]
 gi|262403035|ref|ZP_06079595.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio sp. RC586]
 gi|297579998|ref|ZP_06941925.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae RC385]
 gi|298499727|ref|ZP_07009533.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae MAK 757]
 gi|9658391|gb|AAF96849.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121549116|gb|EAX59151.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae 2740-80]
 gi|121631152|gb|EAX63527.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae V52]
 gi|124116723|gb|EAY35543.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae 1587]
 gi|124123081|gb|EAY41824.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae MZO-3]
 gi|125622806|gb|EAZ51124.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae V51]
 gi|126511144|gb|EAZ73738.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae NCTC 8457]
 gi|126521417|gb|EAZ78640.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae B33]
 gi|146314549|gb|ABQ19089.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae O395]
 gi|148876665|gb|EDL74800.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae 623-39]
 gi|149741700|gb|EDM55729.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae MZO-2]
 gi|150425364|gb|EDN17140.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae AM-19226]
 gi|227011661|gb|ACP07872.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae M66-2]
 gi|227015600|gb|ACP11809.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae O395]
 gi|229334510|gb|EEN99995.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae 12129(1)]
 gi|229336655|gb|EEO01673.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae bv.
           albensis VL426]
 gi|229340463|gb|EEO05469.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae TM
           11079-80]
 gi|229345667|gb|EEO10640.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae RC9]
 gi|229348345|gb|EEO13303.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae TMA 21]
 gi|229352684|gb|EEO17624.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae B33]
 gi|229356258|gb|EEO21176.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae BX
           330286]
 gi|229371925|gb|ACQ62347.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae MJ-1236]
 gi|254845824|gb|EET24238.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae MO10]
 gi|255736060|gb|EET91458.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholera CIRS 101]
 gi|262022495|gb|EEY41203.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae RC27]
 gi|262030065|gb|EEY48711.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae INDRE
           91/1]
 gi|262032165|gb|EEY50736.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio cholerae CT
           5369-93]
 gi|262350534|gb|EEY99667.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio sp. RC586]
 gi|297535644|gb|EFH74478.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae RC385]
 gi|297541708|gb|EFH77759.1| peptidyl-prolyl cis-trans isomerase C [Vibrio cholerae MAK 757]
 gi|327485928|gb|AEA80334.1| Peptidyl-prolyl cis-trans isomerase ppiC [Vibrio cholerae
           LMA3894-4]
          Length = 92

 Score = 58.9 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 4/77 (5%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +++  D      +  K     +K+++       G      +  + P F       Q    
Sbjct: 15  KEQADDILAQLKKGAKFHVLAKKYSTCPSGKKGGDLGEFRQGQMVPAFDKA--CFQGEVL 72

Query: 259 NP--YVTQKGVEYIAIC 273
            P    T+ G   + + 
Sbjct: 73  TPQLVKTKFGWHVVKVL 89


>gi|262039460|ref|ZP_06012764.1| foldase protein PrsA [Leptotrichia goodfellowii F0264]
 gi|261746527|gb|EEY34062.1| foldase protein PrsA [Leptotrichia goodfellowii F0264]
          Length = 607

 Score = 58.9 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/268 (11%), Positives = 75/268 (27%), Gaps = 7/268 (2%)

Query: 44  TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
             I  + +   D  K    +    +  +  K     L            S   +      
Sbjct: 237 IKIKNDDVKKIDYKKMYENITKTIVEKDGYKFEGGSL--NEKIITMFVNSENGYSEALRE 294

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
                   +     E                     +                   +  +
Sbjct: 295 EAKKSLESDLNKLIEIAKKAKAAGIKASPEAAGIQELNDYAKKYYSYLIDTYKPTEQAML 354

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
                K +   ++  +   V+         +   V+K+ ++  ++   +     K ++ +
Sbjct: 355 ERFNSKRETYNIQNTIAGQVVGDYFQPSKADFDEVKKKAEELIKTV-NVENFGQKAKELS 413

Query: 224 SKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
                  + G+   +  S + P+F + + K  +     P  TQ G   I + DK     +
Sbjct: 414 QDPGSKDNGGQLGVIDLSGMVPEFAEAVKKAEKGKIVGPVKTQFGYHIIYVEDKDSSNSD 473

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKKLR 309
            A  +++    TP+  E  + E +KK++
Sbjct: 474 KAKVSHIL--LTPSVSEATKQELIKKMK 499



 Score = 43.1 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 32/282 (11%), Positives = 80/282 (28%), Gaps = 31/282 (10%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ------ 66
           I L+  + + +++     +    +    ++   +NGE I   D+ K  A L  +      
Sbjct: 15  IALIIAFALSMVYAGWNFLKNNVFIERKKVIAEVNGEKIYADDMEKSYADLSSRLDSIVA 74

Query: 67  ------------------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
                                  L +  ++ LI + L     +   +   S  ++     
Sbjct: 75  QRKQQIAQLGGNPDNFKSLPEELLREYLLKGLIDQKLLLSSAKDLKVKVSSADIDKIVEN 134

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
             +  G   E+F   L   G     +K+++  + +   V +        + E    A ++
Sbjct: 135 DQKQAG-GKENFIRLLGTNGYNLTTYKEFIRDKMLLEKVAEKIESSSKISDEELKKAYER 193

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
                   +         I      N+  +            ++    + ++K   K   
Sbjct: 194 YKYFNFQDQTFEEAKPQLIETLNGDNEQMLISSYLVKAWKNAKIKIKNDDVKKIDYKKMY 253

Query: 229 VSI------GKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQ 264
            +I                L+ +   +   S+N  +     +
Sbjct: 254 ENITKTIVEKDGYKFEGGSLNEKIITMFVNSENGYSEALREE 295


>gi|311029004|ref|ZP_07707094.1| hypothetical protein Bm3-1_00328 [Bacillus sp. m3-13]
 gi|311032299|ref|ZP_07710389.1| hypothetical protein Bm3-1_17466 [Bacillus sp. m3-13]
          Length = 309

 Score = 58.9 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/315 (9%), Positives = 85/315 (26%), Gaps = 45/315 (14%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIV-----------SYKSWAMSSRIRTTINGE 49
           M  K          ++    ++    +  +V           +       + I  T+   
Sbjct: 1   MNEKRRLKQKWVWNIIFGLVIINCLTLAVVVKQTFSLREASDASAFVNGQANIVATVGDT 60

Query: 50  VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
           VIT  D+ + +  +  Q     L K+   E++ +  KK ++  S  + D           
Sbjct: 61  VITRKDMLEELEGMYGQ---EMLTKMVNNEVVKQIAKKYKVTVSEQSVDREW-------- 109

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
                   +   +   +  +  N  ++ +  Q     +++   +      E E+ +  Q+
Sbjct: 110 --------KMIKTMYSRSPLHTNTSEELVKEQIRSSLLLEELLVKDVNIPEAELESYYQE 161

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHD 228
            K +   E         +      +    +                 +   + ++  +  
Sbjct: 162 NKQLYTIEDAFHLSHIIVETKDEADAVVKE---------LEDGSNFTSLAMEVSTDELTA 212

Query: 229 VSIGKAQYLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIA 283
              G   +L                   +   ++P    +    I + +K D        
Sbjct: 213 NQGGDLGFLTHESQVYPTAYMAEAANLKEKTWSDPISVDEKYAIIYLYEKMDGVTYSFDE 272

Query: 284 LKAYLSAQNTPTKIE 298
           +K  +        ++
Sbjct: 273 VKDQIRRHLAMEHMD 287


>gi|259147486|emb|CAY80738.1| Ess1p [Saccharomyces cerevisiae EC1118]
          Length = 170

 Score = 58.9 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 10/124 (8%), Positives = 32/124 (25%), Gaps = 3/124 (2%)

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
           K+       +  + +      +K+   R              +        K +    + 
Sbjct: 46  KDQLHKHLKDHPVRVRCLHILIKHKGSRRPASHRSENITISKQDATDEL--KTLITRLDD 103

Query: 209 RLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGV 267
             +        ++ +        G   +    ++ P F++   +      ++   +  GV
Sbjct: 104 DSKTNSFEALAKERSDCSSYKRGGDLGWFGRGEMQPSFEDAAFQLKVGEVSDIVESGSGV 163

Query: 268 EYIA 271
             I 
Sbjct: 164 HVIK 167


>gi|207093124|ref|ZP_03240911.1| hypothetical protein HpylHP_10109 [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 331

 Score = 58.9 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 80/272 (29%), Gaps = 31/272 (11%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           +NG  IT   I +       Q+ +   +  A   LI E +K QEIE+  I  D + ++  
Sbjct: 83  VNGSPITLYQIQEE------QEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQE 136

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
               A+  G+  + F   L  +G     ++  L       ++++N  +        E   
Sbjct: 137 MAMMAQQQGMDLDHFKQMLMAEGHYKL-YRDQLKEHLEMQELLRNILLTNVDTSS-ETKM 194

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
            +   K+                    ++                +  +           
Sbjct: 195 REYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMADPNLEIPGVSKANEKIE-------- 246

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY---IAICDKRDLGGEI 282
                       +++      Q  +   Q + T       G      I     ++     
Sbjct: 247 ------------MKTLNPQIAQVFISHEQGSFTPVMNGGGGQFITFYIKEKKGKNEVSFS 294

Query: 283 ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             K +++ +      +K   E+ +KLR  + I
Sbjct: 295 QAKQFIAQKLVEESKDKILEEHFEKLRVKSRI 326


>gi|156373135|ref|XP_001629389.1| predicted protein [Nematostella vectensis]
 gi|156216388|gb|EDO37326.1| predicted protein [Nematostella vectensis]
          Length = 150

 Score = 58.9 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 8/97 (8%), Positives = 21/97 (21%), Gaps = 1/97 (1%)

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKA 234
                 R   +            +       E+ +       +  +  +      + G  
Sbjct: 50  KHSESRRPSSWKTDKITRSKDEALAILKGYQEQIKSGEATLEDLAKTESDCSSAKNGGDL 109

Query: 235 QYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            +     +   F+           + P  T  G+  I
Sbjct: 110 GFFGRGQMQKPFETATFSLRVGEMSEPVFTDSGIHLI 146


>gi|304313026|ref|YP_003812624.1| hypothetical protein HDN1F_34090 [gamma proteobacterium HdN1]
 gi|301798759|emb|CBL46992.1| Hypothetical protein HDN1F_34090 [gamma proteobacterium HdN1]
          Length = 750

 Score = 58.9 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/266 (10%), Positives = 76/266 (28%), Gaps = 16/266 (6%)

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
                 ++L ++    ++ AV +L     +                     Q   +    
Sbjct: 474 ESAPQSIRLDQVLRSADEAAVLKLRRGDTETFGRLTVIYARTRLHEGLLLKQQRLDDVDL 533

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
           +      +D++   +      + I+           +    + E++    K +     + 
Sbjct: 534 STLNQIVIDRERRVEMEEAAGVRIEMHHSPEQIRRLIKTITDTEIDAYYEKHQRDFQQIG 593

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
           E   R +  S   +  +    ++K +   E  R             AS   +   G    
Sbjct: 594 EVSARHITVSSQKDADRVVDEIRKGLSFEEAVRK---------YSLASDKTENPPGSMGR 644

Query: 237 LLESD--LHPQFQNLLKKSQNNTTNPYVTQKG--VEYIAICDKRDL---GGEIALKAYLS 289
           +  ++  L    +  L       +N +    G   E + +  +  +     + ++++ + 
Sbjct: 645 ISRTEKNLSFLQKLTLILPAGEVSNSFRMPDGKSWEILWVDSRTAVSLPKSDESVRSEIR 704

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAIIH 315
                 K +   A+ V  L   A + 
Sbjct: 705 RTLAQEKAQTQFADQVADLWQRAEVQ 730


>gi|315123321|ref|YP_004065327.1| peptidyl-prolyl cis-trans isomerase C (rotamase C)
           [Pseudoalteromonas sp. SM9913]
 gi|315017081|gb|ADT70418.1| peptidyl-prolyl cis-trans isomerase C (rotamase C)
           [Pseudoalteromonas sp. SM9913]
          Length = 92

 Score = 58.9 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 24/75 (32%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           ++  +D  +   +  K     +K++S       G         + PQF  +         
Sbjct: 15  KEIAEDIIKQLGKGAKFQTLAKKYSSCPSGKKGGDLGEFRRGQMVPQFDKVAFSGAILEP 74

Query: 259 NPYVTQKGVEYIAIC 273
           +   T+ G   I + 
Sbjct: 75  HLVKTKFGWHVIKVL 89


>gi|297379859|gb|ADI34746.1| Hypothetical protein HPV225_0667 [Helicobacter pylori v225d]
          Length = 411

 Score = 58.9 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 83/288 (28%), Gaps = 35/288 (12%)

Query: 34  KSWAMSSRIR----TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
               +  ++       +NG  IT   I +       Q+ +   +  A   LI E +K QE
Sbjct: 147 AGSTLEDKVVGGISLLVNGSPITLYQIQEE------QEKSKVSKAQARDRLIAERIKNQE 200

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
           IE+  I  D + ++      A+  G+  + F   L  +G     ++  L       ++++
Sbjct: 201 IERLKIHVDDDKLDQEMAMMAQQQGMDLDHFKQMLMAEGHYKL-YRDQLKEHLEMQELLR 259

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
           N  +        E    +   K+                    ++               
Sbjct: 260 NILLTNVDTSS-ETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMSNPNLEIPGV 318

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY 269
            +  +                       +++      Q  +   Q + T       G   
Sbjct: 319 SKANEKIE--------------------MKTLNPQIAQVFISHEQGSFTPVMNGGGGQFI 358

Query: 270 ---IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              I     ++       K +++ +      +K   E+ +KLR  + I
Sbjct: 359 TFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEKLRVKSRI 406


>gi|293393860|ref|ZP_06638167.1| peptidyl-prolyl cis-trans isomerase C [Serratia odorifera DSM 4582]
 gi|291423687|gb|EFE96909.1| peptidyl-prolyl cis-trans isomerase C [Serratia odorifera DSM 4582]
          Length = 93

 Score = 58.9 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 21/76 (27%), Gaps = 1/76 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           +K   +      R         K+++     + G      +  +   F + +        
Sbjct: 15  EKLANELLAKLKRGVSFDTLARKYSTCPSKRNGGSLGEFNKGTMVAAFDKAVFSIPLLKP 74

Query: 258 TNPYVTQKGVEYIAIC 273
             P  TQ G   I + 
Sbjct: 75  YGPVKTQFGYHIIKVL 90


>gi|256823777|ref|YP_003147740.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kangiella koreensis
           DSM 16069]
 gi|256797316|gb|ACV27972.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kangiella koreensis
           DSM 16069]
          Length = 95

 Score = 58.9 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 9/82 (10%), Positives = 20/82 (24%), Gaps = 3/82 (3%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             +K     +    +        ++ +        G         +   F N +    + 
Sbjct: 12  KTEKEALALKAKLEKGADFYQLAKRHSMCPSKKQGGDLGEFKRGQMVKPFDNAVFAKGSE 71

Query: 257 ---TTNPYVTQKGVEYIAICDK 275
                 P  T+ G   I +  K
Sbjct: 72  DKPLIGPVKTRFGYHLIKVLYK 93


>gi|78223024|ref|YP_384771.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           metallireducens GS-15]
 gi|78194279|gb|ABB32046.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           metallireducens GS-15]
          Length = 92

 Score = 58.9 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 10/79 (12%), Positives = 21/79 (26%), Gaps = 1/79 (1%)

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNN 256
            +      +              K ++    +  G     +   +  +F + +     N 
Sbjct: 13  TEAECLQLKAEIEAGADFAEIARKNSACPSRMQGGDLGAFVPGQMVKEFDEVVFSGEINK 72

Query: 257 TTNPYVTQKGVEYIAICDK 275
              P  TQ G   I I  +
Sbjct: 73  VLGPVRTQFGYHLIEITKR 91


>gi|283834548|ref|ZP_06354289.1| peptidyl-prolyl cis-trans isomerase [Citrobacter youngae ATCC
           29220]
 gi|291069678|gb|EFE07787.1| peptidyl-prolyl cis-trans isomerase [Citrobacter youngae ATCC
           29220]
          Length = 93

 Score = 58.9 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 20/78 (25%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +K   D  E            +K +        G      +  + P F + +      
Sbjct: 13  KEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKLVFSCPVL 72

Query: 256 NTTNPYVTQKGVEYIAIC 273
               P  TQ G   + + 
Sbjct: 73  EPVGPLHTQFGYHIVKVL 90


>gi|323308448|gb|EGA61693.1| Ess1p [Saccharomyces cerevisiae FostersO]
          Length = 170

 Score = 58.9 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 8/104 (7%), Positives = 26/104 (25%), Gaps = 1/104 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
            +           +          Q+     K +    +   +        ++ +     
Sbjct: 64  HILIKHKGSRRPASHRSENITISKQDATDELKTLITRLDDDSKTNSFEALAKERSDCSSY 123

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
              G   +    ++ P F++   +      ++   +  GV  I 
Sbjct: 124 KRGGDLGWFGRGEMQPSFEDAAFQLKVGEVSDIVESGSGVHVIK 167


>gi|295088064|emb|CBK69587.1| PPIC-type PPIASE domain. [Bacteroides xylanisolvens XB1A]
          Length = 419

 Score = 58.9 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/291 (6%), Positives = 75/291 (25%), Gaps = 40/291 (13%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           ++   + +     +A    +   +NG  +   +          +                
Sbjct: 7   LLLGCISLFVVAVFAQEDPVLMRVNGREVLRSEFENAYRRYAERSNAQ------------ 54

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
                                  +      + L  E   +             +    + 
Sbjct: 55  ------------------LSPKEYAALFAQSKLKVEAARAAGLDTTAVFRKQHEKRRTEL 96

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           +   ++    M     +  +    K +   + V +   R        +  + +  +    
Sbjct: 97  VESYLIDKQVMDSCARVLYQKMGLKARNGRVQVMQIFKRLPQTVTSRHLEEEKARMDSIY 156

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN-TTNPY 261
           +  +            +E ++            ++   +   +F+++         + P+
Sbjct: 157 RVIQNQPD--LNFNRLVEIYSDDKQSR------WIEGLETTSEFEDVAFSLAKAAVSQPF 208

Query: 262 VTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK-IEKHEAEYVKKLRSN 311
            T +G+  + + D+ +      +   L  +    + ++K  A  + +L+ +
Sbjct: 209 FTPEGIHILKVIDREEAFAYENVSGRLIERLRRKEILDKGTAAMLDRLKRS 259


>gi|317180456|dbj|BAJ58242.1| hypothetical protein HPF32_0660 [Helicobacter pylori F32]
          Length = 411

 Score = 58.9 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 89/289 (30%), Gaps = 37/289 (12%)

Query: 34  KSWAMSSRIR----TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
               +  ++       +NG  IT   I +       Q+ +   +  A   LI E +K QE
Sbjct: 147 AGSTLEDKVVGGISLLVNGSPITLYQIQEE------QEKSKVSKAQARDRLIAERIKNQE 200

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
           IE+  I  D + ++      A+  G+  + F   L  +G     ++  L       ++++
Sbjct: 201 IERLKIHVDDDKLDQEMAMMAQQQGMDLDHFKQMLMAEGHYKL-YRDQLKEHLEMQELLR 259

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
           N  +                              +         NQ  +++ + +     
Sbjct: 260 NILLTNVDTSSETKMREYYNKHKEQFSIPTEIETVRY----TSTNQEDLERAMSNPNLEV 315

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKG--- 266
             + K   K                  +    L+PQ   +    +  +  P +   G   
Sbjct: 316 PGVSKANEK------------------IEMKTLNPQIAQVFISHEQGSFTPIMNGGGGQF 357

Query: 267 -VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              YI     ++       K +++ +      +K   E+ +KLR  + I
Sbjct: 358 ITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEKLRVKSRI 406


>gi|308182851|ref|YP_003926978.1| hypothetical protein HPPC_03490 [Helicobacter pylori PeCan4]
 gi|308065036|gb|ADO06928.1| hypothetical protein HPPC_03490 [Helicobacter pylori PeCan4]
          Length = 405

 Score = 58.9 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 89/288 (30%), Gaps = 35/288 (12%)

Query: 34  KSWAMSSRIR----TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
            +  +  ++       +NG  IT   I +       Q+ +   +  A   LI E +K QE
Sbjct: 141 ANSTLEDKVVGGISLLVNGSPITLYQIQEE------QEKSKVSKAQARDRLIAERIKNQE 194

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
           IE+  I  D + ++      A+  G+  + F   L  +G     ++  L       ++++
Sbjct: 195 IERLKIHVDDDKLDQEMAMMAQQQGMDLDHFKQMLMAEGHYKL-YRDQLKEHLEMQELLR 253

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
           N  +                              +         NQ  +++ + +     
Sbjct: 254 NILLTNVDTSSETKMREYYNKHKDQFSIPTEVETVRY----TSTNQEDLERAMSNPNLEV 309

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY 269
             + K   K+E                 +++      Q  +   Q + T       G   
Sbjct: 310 PGVSKANEKIE-----------------MKTLNPQIAQVFISHEQGSFTPVMNGGGGQFI 352

Query: 270 ---IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              I     ++       K +++ +      +K   E+ +KLR  + I
Sbjct: 353 TFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEKLRVKSRI 400


>gi|260596006|ref|YP_003208577.1| peptidyl-prolyl cis-trans isomerase C [Cronobacter turicensis
           z3032]
 gi|260215183|emb|CBA27011.1| Peptidyl-prolyl cis-trans isomerase C [Cronobacter turicensis
           z3032]
          Length = 129

 Score = 58.9 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +K   D  E            +K +        G      +  + P F + +      
Sbjct: 49  KEEKLALDLLEQIKNGGDFEKLAKKHSICPSGKKGGHLGEFRQGQMVPAFDKVVFSCPVL 108

Query: 256 NTTNPYVTQKGVEYIAIC 273
             T P  TQ G   I + 
Sbjct: 109 EPTGPLHTQFGYHIIKVL 126


>gi|269122654|ref|YP_003310831.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sebaldella
           termitidis ATCC 33386]
 gi|268616532|gb|ACZ10900.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sebaldella
           termitidis ATCC 33386]
          Length = 600

 Score = 58.9 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/162 (7%), Positives = 43/162 (26%), Gaps = 4/162 (2%)

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
             Y   + ++       +      + +   +     +  +      K+  +  +  L   
Sbjct: 335 DSYNPSDADLKKIYDADQGKYDIRHSVGGYVVGDFFDPTEADKENTKKSAEELKKTLTPE 394

Query: 214 KDCNKLEKFASKI-HDVSIGKAQYLLESD--LHPQFQNLLKKSQNNTTNPYVTQKGVEYI 270
                 +K +         G+  ++  +   +    + +    +     P  T+ G   I
Sbjct: 395 NFVETAKKVSEDPGSKDQGGELGWVDSNTNFVPEFLEAIKSAQKGQIIGPVQTEFGSHII 454

Query: 271 AICDKRDLGGEIALKAYLSAQNT-PTKIEKHEAEYVKKLRSN 311
            + D      +    +++           K   + +  L+  
Sbjct: 455 YVEDVDSANPDKKKVSHILLLPKPSEASRKELVDRLDTLKKE 496



 Score = 42.7 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 28/281 (9%), Positives = 85/281 (30%), Gaps = 22/281 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCI---VPIVSYKSWAMSSRIRTTINGEVITDGDIS 57
           M  + F  L   + +L    +L+   +     I + K+   ++ +   +NG  I   D+ 
Sbjct: 1   MALRKFKKLMVPLSVLFIAAMLVPIFLKIGESIRAGKNIQQNNEVIAEVNGHKIHRLDLE 60

Query: 58  K----------RIALLKLQK--------INGELEKIAVQELIVETLKKQEIEKSGITFDS 99
           +          +I  +K Q+         +  ++K+ + EL+   L     E   I    
Sbjct: 61  RGVAGVKNKIMQIKSMKAQQGIEDNSEVPDDIIKKVILGELVSNALLVSSAEDLKIKASD 120

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
             +N    +            +         +   K+ +        V++        + 
Sbjct: 121 KEINDKINEIKAGVAKGESFLNYLQSMGIANEKELKRMIKESIEVSRVLETQQKAHKLSE 180

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
           E      +         +   +           +    ++  + + +  + ++    +++
Sbjct: 181 EDLKKYYEMYRYTDFQDQTFEQAKPTIEDYVGKEYSDLIRNSLIEKQREKAKIVFKDDEI 240

Query: 220 EKFASKIHDVSIGKAQY-LLESDLHPQFQNLLKKSQNNTTN 259
           +K   ++      K  Y   E+ +  +   ++  +    + 
Sbjct: 241 KKLYEEMVRPIAEKEGYSFKEALMDTRILMMVVSTGTEYSE 281


>gi|217033711|ref|ZP_03439138.1| hypothetical protein HP9810_5g53 [Helicobacter pylori 98-10]
 gi|216943900|gb|EEC23337.1| hypothetical protein HP9810_5g53 [Helicobacter pylori 98-10]
          Length = 411

 Score = 58.9 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 89/289 (30%), Gaps = 37/289 (12%)

Query: 34  KSWAMSSRIR----TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
               +  ++       +NG  IT   I +       Q+ +   +  A   LI E +K QE
Sbjct: 147 AGSTLEDKVVGGISLLVNGSPITLYQIQEE------QEKSKVSKAQARDRLIAERIKNQE 200

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
           IE+  I  D + ++      A+  G+  + F   L  +G     ++  L       ++++
Sbjct: 201 IERLKIHVDDDKLDQEMAMMAQQQGMDLDHFKQMLMAEGHYKL-YRDQLKEHLEMQELLR 259

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
           N  +                              +         NQ  +++ + +     
Sbjct: 260 NILLTNVDTSSETKMREYYNKHKEQFSIPTEIETVRY----TSTNQEDLERAMSNPNLEV 315

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKG--- 266
             + K   K                  +    L+PQ   +    +  +  P +   G   
Sbjct: 316 PGVSKANEK------------------IEMKTLNPQIAQVFISHEQGSFTPIMNGGGGQF 357

Query: 267 -VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              YI     ++       K +++ +      +K   E+ +KLR  + I
Sbjct: 358 ITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEKLRVKSRI 406


>gi|125601574|gb|EAZ41150.1| hypothetical protein OsJ_25646 [Oryza sativa Japonica Group]
          Length = 239

 Score = 58.9 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/118 (10%), Positives = 35/118 (29%), Gaps = 8/118 (6%)

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQK 265
           +          +   +++      + G   ++    + P+F+     +  N      T+ 
Sbjct: 53  KNIITGGADLSDLAVEYSLCPSKENGGMLGWVRRGQMVPEFEEAAFGAPLNKVVRCKTKF 112

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS-----NAIIHYY 317
           G   + +  +R+    E      L A+       +     +  +R       A +  +
Sbjct: 113 GWHLLQVLAEREQCVVEDIPPEELHAKMQDPNFLEEAQ--LIDVREPDEVDKASLEGF 168


>gi|125559665|gb|EAZ05201.1| hypothetical protein OsI_27400 [Oryza sativa Indica Group]
          Length = 302

 Score = 58.9 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/118 (10%), Positives = 35/118 (29%), Gaps = 8/118 (6%)

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQK 265
           +          +   +++      + G   ++    + P+F+     +  N      T+ 
Sbjct: 116 KNIITGGADLSDLAVEYSLCPSKENGGMLGWVRRGQMVPEFEEAAFGAPLNKVVRCKTKF 175

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS-----NAIIHYY 317
           G   + +  +R+    E      L A+       +     +  +R       A +  +
Sbjct: 176 GWHLLQVLAEREQCVVEDIPPEELHAKMQDPNFLEEAQ--LIDVREPDEVDKASLEGF 231


>gi|115474191|ref|NP_001060694.1| Os07g0687500 [Oryza sativa Japonica Group]
 gi|50509156|dbj|BAD30296.1| peptidyl-prolyl cis-trans isomerase-like protein [Oryza sativa
           Japonica Group]
 gi|113612230|dbj|BAF22608.1| Os07g0687500 [Oryza sativa Japonica Group]
          Length = 302

 Score = 58.9 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/118 (10%), Positives = 35/118 (29%), Gaps = 8/118 (6%)

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQK 265
           +          +   +++      + G   ++    + P+F+     +  N      T+ 
Sbjct: 116 KNIITGGADLSDLAVEYSLCPSKENGGMLGWVRRGQMVPEFEEAAFGAPLNKVVRCKTKF 175

Query: 266 GVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS-----NAIIHYY 317
           G   + +  +R+    E      L A+       +     +  +R       A +  +
Sbjct: 176 GWHLLQVLAEREQCVVEDIPPEELHAKMQDPNFLEEAQ--LIDVREPDEVDKASLEGF 231


>gi|157368404|ref|YP_001476393.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Serratia
           proteamaculans 568]
 gi|157320168|gb|ABV39265.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Serratia
           proteamaculans 568]
          Length = 111

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 21/76 (27%), Gaps = 1/76 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           +K   +      R         K+++     + G      +  +   F + +        
Sbjct: 33  EKLADELLAKLKRGVSFDTLARKYSTCPSKRNGGSLGEFNKGTMVAAFDKAVFSIPLLKP 92

Query: 258 TNPYVTQKGVEYIAIC 273
             P  TQ G   I + 
Sbjct: 93  YGPVKTQFGYHIIKVL 108


>gi|27367962|ref|NP_763489.1| peptidyl-prolyl cis-trans isomerase ppiC [Vibrio vulnificus CMCP6]
 gi|37676090|ref|NP_936486.1| parvulin-like peptidyl-prolyl isomerase [Vibrio vulnificus YJ016]
 gi|320158234|ref|YP_004190612.1| peptidyl-prolyl cis-trans isomerase ppiC [Vibrio vulnificus
           MO6-24/O]
 gi|27359535|gb|AAO08479.1| Peptidyl-prolyl cis-trans isomerase ppiC [Vibrio vulnificus CMCP6]
 gi|37200630|dbj|BAC96456.1| parvulin-like peptidyl-prolyl isomerase [Vibrio vulnificus YJ016]
 gi|319933546|gb|ADV88409.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio vulnificus
           MO6-24/O]
          Length = 92

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 22/77 (28%), Gaps = 4/77 (5%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +++ +D      +  K     +K +        G         + PQF  +         
Sbjct: 15  KEQAEDIIAQLKKGAKFHVLAKKHSLCPSGKRGGDLGEFKRGQMVPQFDKV--CFTGEVL 72

Query: 259 NP--YVTQKGVEYIAIC 273
            P    T+ G   + + 
Sbjct: 73  TPHLVKTKFGWHVLKVL 89


>gi|16762221|ref|NP_457838.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16767186|ref|NP_462801.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29143710|ref|NP_807052.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56415769|ref|YP_152844.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62182385|ref|YP_218802.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161617027|ref|YP_001590992.1| hypothetical protein SPAB_04855 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167553321|ref|ZP_02347071.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167994605|ref|ZP_02575696.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168234229|ref|ZP_02659287.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168238365|ref|ZP_02663423.1| peptidyl-prolyl cis-trans isomerase C (PPIase C) [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168244961|ref|ZP_02669893.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168263199|ref|ZP_02685172.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168822964|ref|ZP_02834964.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194446230|ref|YP_002043149.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194451515|ref|YP_002047932.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194470361|ref|ZP_03076345.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194735487|ref|YP_002116844.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197264763|ref|ZP_03164837.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197364698|ref|YP_002144335.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198245194|ref|YP_002217849.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200388005|ref|ZP_03214617.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204930319|ref|ZP_03221296.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205354518|ref|YP_002228319.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207859123|ref|YP_002245774.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213027842|ref|ZP_03342289.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213051681|ref|ZP_03344559.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213421551|ref|ZP_03354617.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213425874|ref|ZP_03358624.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213581335|ref|ZP_03363161.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213609769|ref|ZP_03369595.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213648396|ref|ZP_03378449.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213864702|ref|ZP_03386821.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|224585732|ref|YP_002639531.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238912918|ref|ZP_04656755.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289825744|ref|ZP_06544912.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|61229953|sp|P0A265|PPIC_SALTY RecName: Full=Peptidyl-prolyl cis-trans isomerase C; Short=PPIase
           C; AltName: Full=Parvulin; AltName: Full=Rotamase C
 gi|61229954|sp|P0A266|PPIC_SALTI RecName: Full=Peptidyl-prolyl cis-trans isomerase C; Short=PPIase
           C; AltName: Full=Parvulin; AltName: Full=Rotamase C
 gi|25512550|pir||AE0923 peptidyl-prolyl cis-trans isomerase C [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|6960285|gb|AAF33475.1| 95% identity with E. coli peptidyl-prolyl cis-trans isomerase C
           (PPIC) (SPP39159); contains similarity to Pfam family
           PF00639 (PPIC-type PPIASE domain), score=155.9,
           E=6.8e-43, N=1 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16422478|gb|AAL22760.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16504525|emb|CAD09407.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139345|gb|AAO70912.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56130026|gb|AAV79532.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62130018|gb|AAX67721.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161366391|gb|ABX70159.1| hypothetical protein SPAB_04855 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404893|gb|ACF65115.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194409819|gb|ACF70038.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194456725|gb|EDX45564.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194710989|gb|ACF90210.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197096175|emb|CAR61771.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197243018|gb|EDY25638.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197288728|gb|EDY28103.1| peptidyl-prolyl cis-trans isomerase C (PPIase C) [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197939710|gb|ACH77043.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199605103|gb|EDZ03648.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204320723|gb|EDZ05925.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205274299|emb|CAR39321.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205322213|gb|EDZ10052.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205327563|gb|EDZ14327.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205331808|gb|EDZ18572.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205336238|gb|EDZ23002.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205340710|gb|EDZ27474.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205348090|gb|EDZ34721.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206710926|emb|CAR35291.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224470260|gb|ACN48090.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261249040|emb|CBG26898.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996191|gb|ACY91076.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160432|emb|CBW19959.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915033|dbj|BAJ39007.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320088327|emb|CBY98087.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321225436|gb|EFX50493.1| Peptidyl-prolyl cis-trans isomerase ppiC [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322612992|gb|EFY09943.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322617420|gb|EFY14320.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625588|gb|EFY22410.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627011|gb|EFY23804.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631273|gb|EFY28036.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638306|gb|EFY35005.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642844|gb|EFY39430.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647000|gb|EFY43502.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650388|gb|EFY46801.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656322|gb|EFY52616.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657547|gb|EFY53817.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665958|gb|EFY62139.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322666697|gb|EFY62874.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671060|gb|EFY67190.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322679233|gb|EFY75285.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681637|gb|EFY77664.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686036|gb|EFY82024.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322716878|gb|EFZ08449.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323132263|gb|ADX19693.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323192662|gb|EFZ77890.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197831|gb|EFZ82962.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203720|gb|EFZ88741.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205405|gb|EFZ90379.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210776|gb|EFZ95652.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215942|gb|EGA00675.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221435|gb|EGA05853.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323227335|gb|EGA11502.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231732|gb|EGA15843.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236147|gb|EGA20224.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239616|gb|EGA23664.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244288|gb|EGA28296.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249615|gb|EGA33527.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250293|gb|EGA34179.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256500|gb|EGA40231.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259802|gb|EGA43435.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265210|gb|EGA48708.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268361|gb|EGA51833.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326625636|gb|EGE31981.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326629653|gb|EGE35996.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332990751|gb|AEF09734.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 93

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 23/81 (28%), Gaps = 1/81 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +K   D  E            +K +        G      +  + P F + +      
Sbjct: 13  KEEKLALDLLEQIKNGGDFEKLAKKHSICPSGKKGGHLGEFRQGQMVPAFDKVVFSCPVL 72

Query: 256 NTTNPYVTQKGVEYIAICDKR 276
             T P  TQ G   I +  ++
Sbjct: 73  EPTGPLHTQFGYHIIKVLYRK 93


>gi|148260583|ref|YP_001234710.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidiphilium cryptum
           JF-5]
 gi|326403778|ref|YP_004283860.1| putative peptidylprolyl isomerase [Acidiphilium multivorum AIU301]
 gi|146402264|gb|ABQ30791.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidiphilium cryptum
           JF-5]
 gi|325050640|dbj|BAJ80978.1| putative peptidylprolyl isomerase [Acidiphilium multivorum AIU301]
          Length = 248

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/159 (8%), Positives = 39/159 (24%), Gaps = 5/159 (3%)

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
                +      + + +  T   +    +L +   +    +   +             P 
Sbjct: 79  DVSEADCRAEFARHRARFRTPPLFEAAHILIAADMSSEDARAPARAEAARLASLLAARPD 138

Query: 215 -DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTN-PYVTQKGVEYIA 271
                  + ++       G    +   D+ P+  ++    +       P  T+ G   + 
Sbjct: 139 SFARLAREHSACPSGADGGGLGQITARDVTPEIASMLAAMTPGTICPVPVPTRHGYHLLR 198

Query: 272 ICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
           +  + D       A++  +               Y   L
Sbjct: 199 LDRREDGRDLPFEAVRDRIRDHLRQRAWLDAARAYAATL 237


>gi|326334983|ref|ZP_08201183.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325692788|gb|EGD34727.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 707

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/258 (9%), Positives = 63/258 (24%), Gaps = 18/258 (6%)

Query: 50  VITDGDISKRIALLKLQKINGELEKIAV-----------QELIVETLKKQEIEKSGITFD 98
            I+D +I   +   K Q    ++  +             ++ I + LK     +      
Sbjct: 211 KISDNEIQDYVKAHKKQYQQKDMRNLQFVLASEVASPEDKKAIEQDLKALNNPRILYNNQ 270

Query: 99  SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGN 158
           +   +             AE  +   D         K  L +         +   L    
Sbjct: 271 TQKSDTLPGFSQVPLKDIAEFVNENSDTPFDSLYVSKDKLPVNFADTLYNLSIGELYGPY 330

Query: 159 LEMEIPANKQKMKNITVREYLIRTVLFSIPDN------KLQNQGFVQKRIKDAEESRLRL 212
            +       + +  I   E     +L +   +        + +   + + +         
Sbjct: 331 QDGNAYKYTRMLSKIPNGEVRASHILIAYQGSLPGNDAITRTKEEAKAKAEGILAQIKAG 390

Query: 213 PKDCNKLEKFASKIH-DVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIA 271
                  +  +       + G   +     +   F + +  ++        T  G   I 
Sbjct: 391 GDYTALAQANSDDASNAQNGGDLDFFSRGMMVQPFNDYVFHAKVGDIGLVETNFGFHIIK 450

Query: 272 ICDKRDLGGEIALKAYLS 289
           I D R+      +   + 
Sbjct: 451 ITDLREGVKLATITRNIE 468



 Score = 41.2 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 1/63 (1%)

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             N  + P V   GV  I +  K D+   +   +         K+ +   +    L   A
Sbjct: 639 PPNKVSKPIVGDNGVYVIQVIQK-DVAPALPNYSSYMGILRNQKLNRASQDLFSALEQTA 697

Query: 313 IIH 315
            I 
Sbjct: 698 EIK 700


>gi|56757089|gb|AAW26716.1| SJCHGC03333 protein [Schistosoma japonicum]
          Length = 136

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK---- 252
               +  +A E      +     E ++      S G   ++    +   FQ+        
Sbjct: 51  EKYSKCLEALEQLKNGKRFNQVAELYSED-KARSGGDLGWMSRGSMVGAFQDAAFNLPVS 109

Query: 253 ---SQNNTTNPYVTQKGVEYIAICDKR 276
              +   T +P  TQ G   I +  +R
Sbjct: 110 TLENPKYTVSPVKTQYGYHIIMVEGRR 136


>gi|85711461|ref|ZP_01042519.1| Parvulin-like peptidyl-prolyl isomerase [Idiomarina baltica OS145]
 gi|85694613|gb|EAQ32553.1| Parvulin-like peptidyl-prolyl isomerase [Idiomarina baltica OS145]
          Length = 92

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 9/73 (12%), Positives = 19/73 (26%), Gaps = 1/73 (1%)

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN-NTTNPYV 262
           + ++      K  +   K +        G        ++ P F  ++          P  
Sbjct: 19  ELKKQLANGAKFADLARKHSLCPSGKQGGDLGEFRRGEMVPAFDKVVFGQPTLEVHGPVK 78

Query: 263 TQKGVEYIAICDK 275
           T  G   I    +
Sbjct: 79  TAFGYHLIKTLSR 91


>gi|332978701|gb|EGK15395.1| peptidyl-prolyl cis-trans isomerase [Psychrobacter sp. 1501(2011)]
          Length = 92

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 7/80 (8%), Positives = 23/80 (28%), Gaps = 4/80 (5%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           ++  ++      +        +K ++       G      +  + P F  +         
Sbjct: 15  KELAEEIIAKLKKGAHFDVLAKKHSTCPSGKKGGDLGEFRKGQMVPAFDKV--CFNGELL 72

Query: 259 NP--YVTQKGVEYIAICDKR 276
            P    T+ G   + +  ++
Sbjct: 73  TPHLVKTKFGWHVVKVLYRK 92


>gi|239995310|ref|ZP_04715834.1| peptidyl-prolyl cis-trans isomerase C [Alteromonas macleodii ATCC
           27126]
 gi|332143295|ref|YP_004429033.1| peptidyl-prolyl cis-trans isomerase C [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327553317|gb|AEB00036.1| peptidyl-prolyl cis-trans isomerase C [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 93

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 9/76 (11%), Positives = 19/76 (25%), Gaps = 1/76 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN- 255
             +K      E   +        ++ +        G         +   F +++ K    
Sbjct: 12  KTEKEALSILEQLKKGKDFATLAKRHSKCPSGKRGGDLGEFRRGQMVKAFDDVVFKKDVL 71

Query: 256 NTTNPYVTQKGVEYIA 271
               P  T+ G   I 
Sbjct: 72  KVHGPVKTRFGYHLIK 87


>gi|91793769|ref|YP_563420.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           denitrificans OS217]
 gi|91715771|gb|ABE55697.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           denitrificans OS217]
          Length = 92

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 9/76 (11%), Positives = 23/76 (30%), Gaps = 1/76 (1%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTN 259
             +D ++  +          + +S       G         +  +F  ++  +  N    
Sbjct: 16  ECEDLKQQIIAGADFAQIAREHSSCPSAAEGGNLGSFGPGMMVQEFDAVVFSAPLNEVQG 75

Query: 260 PYVTQKGVEYIAICDK 275
           P  TQ G   + +  +
Sbjct: 76  PVKTQFGYHLLEVTQR 91


>gi|150026459|ref|YP_001297285.1| hypothetical protein FP2430 [Flavobacterium psychrophilum JIP02/86]
 gi|149773000|emb|CAL44484.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
          Length = 701

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 24/99 (24%)

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
            K   +    K +    +               +        G   Y  +  +   F N 
Sbjct: 369 EKRTKEQAKAKAVSLLAQVLANPSAFQMLAYTNSDDSSSQQGGDLGYFSQGQMVKPFNNF 428

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
           +  +         T  G   I + DK+D      L   +
Sbjct: 429 VFSNPVGKIGLVETDFGFHIINVTDKQDAVRLATLAQKI 467


>gi|299148146|ref|ZP_07041208.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_23]
 gi|298512907|gb|EFI36794.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_23]
          Length = 516

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/290 (6%), Positives = 74/290 (25%), Gaps = 40/290 (13%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           ++   + +     +A    +   +NG  I   +          +                
Sbjct: 7   LLLGCISLFVVAVFAQEDPVLMRVNGREILRSEFEYAYRRYAERS--------------- 51

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
                          ++   +  +      + L  E   +            ++    + 
Sbjct: 52  ---------------NARLSSKEYAALFAQSKLKVEAARAAGLDTTSIFRKQQEKCRTEL 96

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           +   ++    M        +    K +   + V +   R        +  + +  +    
Sbjct: 97  VESYLIDRQVMDSCARAIYQKMGLKARSGRVQVMQIFKRLPQTITSRHLEEEKTRMDSIY 156

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL-ESDLHPQFQNLLKKSQNNTTNPY 261
           +  +            +E ++            ++                ++   + P+
Sbjct: 157 RMIQNQPD--LNFNRLVEIYSDDKQSR------WIECLETTSEFENVAFSLAKGMASQPF 208

Query: 262 VTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK-IEKHEAEYVKKLRS 310
            T +G+  + + D+ +      + A L  +    + ++K     +++L+ 
Sbjct: 209 FTPEGIHILKVMDREETAAYENVSARLMERLRRKEILDKGTGAVLERLKK 258


>gi|227511814|ref|ZP_03941863.1| peptidylprolyl isomerase [Lactobacillus buchneri ATCC 11577]
 gi|227084904|gb|EEI20216.1| peptidylprolyl isomerase [Lactobacillus buchneri ATCC 11577]
          Length = 295

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 90/285 (31%), Gaps = 34/285 (11%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           ++   FV++      ++     + S     TING  IT     + +             +
Sbjct: 2   IMKKGFVILAGIGAGLILSACSSQS---VATINGSNITKDAYYQEMK-------ESPSGQ 51

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
            A+ ++I++   +   ++ G    +  V        +  G     FS+FL + G+  + +
Sbjct: 52  QALGQMILDKGLE---KQYGNKVKNTAVTRQLNTVKKQYG---ASFSAFLTQNGLTASQY 105

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
           K+ L    +    +K +     G L+ +    + K+                     L +
Sbjct: 106 KRNLKEDLLLKAAIKANTKFTPGMLKQQFKHYQPKVTVNQ----------------ILVS 149

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-S 253
           +    +++ D   +     K        A+               + L P F+    K  
Sbjct: 150 KKATAQKVIDQLNAGHSFAKLATAYSTDAATKKKSGRISPFDNTNTTLDPNFKKAAFKLK 209

Query: 254 QNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
               T  P  TQ G E I + +    G     K  L  Q   TK 
Sbjct: 210 TGQYTKTPVKTQYGYEVIQMVNHPAKGTHQNHKEALKNQIVDTKA 254


>gi|197249971|ref|YP_002148838.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197213674|gb|ACH51071.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 93

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 23/81 (28%), Gaps = 1/81 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +K   D  E            +K +        G      +  + P F + +      
Sbjct: 13  KEEKLALDLLEQIKNGGDFEKLAKKHSICPSGKKGGHLGEFRQGQMVPAFDKVVFSCPVL 72

Query: 256 NTTNPYVTQKGVEYIAICDKR 276
             T P  TQ G   I +  ++
Sbjct: 73  EPTGPLHTQFGYHIIKVLYRK 93


>gi|332025211|gb|EGI65389.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Acromyrmex
           echinatior]
          Length = 162

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 9/92 (9%), Positives = 21/92 (22%), Gaps = 1/92 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R   +   +     +  +       E+             K++        G        
Sbjct: 68  RPSSWREENITRSKEEALDLVKSYREQIASGKATFAELASKYSDCSSAKRGGDLGPFSRG 127

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
            +   F+           ++P  T  G+  I 
Sbjct: 128 AMQKPFEQAAFALKVGELSSPVHTDSGIHIIQ 159


>gi|84385275|ref|ZP_00988307.1| peptidyl-prolyl cis-trans isomerase [Vibrio splendidus 12B01]
 gi|84379872|gb|EAP96723.1| peptidyl-prolyl cis-trans isomerase [Vibrio splendidus 12B01]
          Length = 92

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 9/75 (12%), Positives = 25/75 (33%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           ++  +D  +   +  K     +K ++       G      +  + PQF  +    +    
Sbjct: 15  KEVAEDIIKQLKKGAKFQTLAKKHSTCPSGKKGGDLGEFKKGQMVPQFDKVCFSGETLVP 74

Query: 259 NPYVTQKGVEYIAIC 273
           +   T+ G   + + 
Sbjct: 75  HLVKTKFGWHVVKVL 89


>gi|238020925|ref|ZP_04601351.1| hypothetical protein GCWU000324_00822 [Kingella oralis ATCC 51147]
 gi|237867905|gb|EEP68911.1| hypothetical protein GCWU000324_00822 [Kingella oralis ATCC 51147]
          Length = 290

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 69/278 (24%), Gaps = 21/278 (7%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             T+NG  I   ++ +R+  +         +   +++ I +                   
Sbjct: 24  VVTVNGTKIDSSELDRRVQAVVAGSQGQVQDSPELRQFIAQQTVL------ETVVTQAAK 77

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                +        +E       +       FKQ  A       ++   +     N    
Sbjct: 78  KQGLDKSKEYKDAESESMKQAKAQGADKQADFKQQWAD--YQNQLLMQVYARDVINKNPV 135

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
             A  Q+  N   + Y     +          +          E              K+
Sbjct: 136 TDAQVQQRYNEIKQRYDNTDEVQIGEIITDNAEQIKAA-----ERDLKAKKSFAEVARKY 190

Query: 223 ASKIHDVSIGKA--QYLLESDL----HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
           +   +  + G     Y+   DL       +Q +    +   + P    K      I DKR
Sbjct: 191 SIDPNIKAGGAVFSDYISLRDLQEARPNIYQAIGSLKKGQYSKPISGDKLHAVYYINDKR 250

Query: 277 DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            +  E      +          +   E V  L  NA I
Sbjct: 251 KISIE--PLDKIKEGLRAGLANERVQEAVGNLMQNASI 286


>gi|254418583|ref|ZP_05032307.1| PPIC-type PPIASE domain protein [Brevundimonas sp. BAL3]
 gi|196184760|gb|EDX79736.1| PPIC-type PPIASE domain protein [Brevundimonas sp. BAL3]
          Length = 367

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/179 (9%), Positives = 52/179 (29%), Gaps = 6/179 (3%)

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
            +++   V++ + ++   + +          K          + +   P  + +      
Sbjct: 68  EEALIRAVLEAEILVDAPSRDECRRVYDHAPKRFCTPALTEASHILLAPQTQDEAAWAEA 127

Query: 200 KRIKDAEESRLRLPKD--CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT 257
           +    A  + L        +  ++ +        G    +   DL  + +  L   Q+  
Sbjct: 128 QAAAKAAITELAAYPHRFADLAQRLSDCPSKGVGGSLGQISPGDLAAEVEAGLDALQDGE 187

Query: 258 --TNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             + P  ++ G   + +  + +        +   ++            A YV  L + A
Sbjct: 188 TASEPVRSRFGWHVLRLDRRIEGRQLPFEHVLPRIALHLESRAWTAAAARYVSGLAAEA 246


>gi|90567994|dbj|BAE92208.1| peptidyl-prolyl cis-trans isomerase C [Flavobacterium
           psychrophilum]
          Length = 701

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 24/99 (24%)

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
            K   +    K +    +               +        G   Y  +  +   F N 
Sbjct: 369 EKRTKEQAKAKAVSLLAQVLANPSAFQMLAYTNSDDSSSQQGGDLGYFSQGQMVKPFNNF 428

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
           +  +         T  G   I + DK+D      L   +
Sbjct: 429 VFSNPVGKIGLVETDFGFHIINVTDKQDAVRLATLAQKI 467


>gi|88606731|ref|YP_504706.1| hypothetical protein APH_0074 [Anaplasma phagocytophilum HZ]
 gi|88597794|gb|ABD43264.1| conserved hypothetical protein [Anaplasma phagocytophilum HZ]
          Length = 393

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 81/264 (30%), Gaps = 14/264 (5%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI---ALLKLQKINGEL 72
           ++ +F  + F  + I   K  A   +I   ++ +V+T  D+ +R                
Sbjct: 1   MSRWFPWLCFLCLVIPCGKGCASV-KIEAVVDDKVLTSLDVDRREHANGFFYKTAYAEGN 59

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE-DFSSFLDKQGIGD 131
            +  +  LI E + + E ++ GIT +   V     +     GL +           G+  
Sbjct: 60  RREVLGLLIDEVILELEAKQLGITVEKQEVAQEVERLFSVLGLCSGLSLDECAAGNGLDA 119

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
              + ++  + IW  ++           + E+     + K+  +   L    +F      
Sbjct: 120 ASIESHVRSRVIWSKILSTRVAPFLSVADDEVSQYVAEAKSDALETVLDLEQVFVPFR-A 178

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
                 V   +    E      +           +   ++G    +  S L        +
Sbjct: 179 GAVLDSVASELHKGVELTKIAERYREHGVYVDRTMGASAVGFVHDVKVSLL--------R 230

Query: 252 KSQNNTTNPYVTQKGVEYIAICDK 275
             + +   P    KG   + +  K
Sbjct: 231 AKEGSIIGPVRIDKGHLLLKLLSK 254


>gi|307132747|ref|YP_003884763.1| peptidyl-prolyl cis-trans isomerase ppiD [Dickeya dadantii 3937]
 gi|306530276|gb|ADN00207.1| Peptidyl-prolyl cis-trans isomerase ppiD [Dickeya dadantii 3937]
          Length = 270

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/135 (11%), Positives = 40/135 (29%), Gaps = 2/135 (1%)

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
                E+    ++  +   R     T    +  +  +     Q+      + R       
Sbjct: 114 EPQPAEVRRWYRQHADRFRRPEQRLTRHLLLTVDGNRPSVD-QQVAGMLRQLRADPDGFA 172

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK 275
           +  ++ +     +  G   ++    L P  ++ L   +    + P  T+ G+  +     
Sbjct: 173 SLAQRHSHCPTALEGGLMGWVSRGLLFPALEHCLFALAAGELSEPVETELGLHLLRCEAI 232

Query: 276 RDLGGEIALKAYLSA 290
           R        +A + A
Sbjct: 233 RPAAPLPEAEALVKA 247


>gi|167950935|ref|ZP_02538009.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Endoriftia
          persephone 'Hot96_1+Hot96_2']
          Length = 79

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 1/69 (1%)

Query: 1  MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
          M   +      +I       + I F +  I  Y   A +  +  ++N E IT+ D+ +R 
Sbjct: 1  MLQAIRDKAQGWIAWAIVILISIPFALWGIQEYLG-AGAEPVVASVNDEEITERDLDQRF 59

Query: 61 ALLKLQKIN 69
             + Q   
Sbjct: 60 NTFRQQLRE 68


>gi|225715790|gb|ACO13741.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Esox
           lucius]
          Length = 142

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 26/87 (29%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               +  +A E      +      +++        G   ++    +   FQ+      N+
Sbjct: 57  EKHSKCMEAMEKLKAGVRFSEVASQYSED-KARQGGDLGWMTRGSMTGPFQDAAFALPNS 115

Query: 257 TT-------NPYVTQKGVEYIAICDKR 276
           T         P  T+ G   I +  K+
Sbjct: 116 TMDKPIYTDPPVKTKFGYHIIMVEGKK 142


>gi|168467674|ref|ZP_02701511.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195629962|gb|EDX48622.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 93

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 23/81 (28%), Gaps = 1/81 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +K   D  E            +K +        G      +  + P F + +      
Sbjct: 13  KEEKLALDLLEQIKNGGDFEKLAKKHSICPSGKKGGHLGEFRQGQMVPAFDKVVFFCPVL 72

Query: 256 NTTNPYVTQKGVEYIAICDKR 276
             T P  TQ G   I +  ++
Sbjct: 73  EPTGPLHTQFGYHIIKVLYRK 93


>gi|307610560|emb|CBX00148.1| hypothetical protein LPW_18931 [Legionella pneumophila 130b]
          Length = 316

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 57/218 (26%), Gaps = 8/218 (3%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+   +   +  L    + I F +  +  Y      S  +  +N + IT        
Sbjct: 1   MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSRQISDAKVIVNDKPITMQAFETNY 60

Query: 61  ALLKLQK--------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
              + Q+            L+   + ++I   +  Q   K G        N   VQ  + 
Sbjct: 61  RRTRAQQDLPQMTAADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQANAAIVQIPQF 120

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
                     +           + +         + +  F     +  +     +     
Sbjct: 121 QEDGHFSAQRYQQALSGALFTPETFQKEVRQGMLLNQQRFAFMGTSFALSDEIKRFVRLY 180

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
           +  R+Y   TV     + + +      K   +    + 
Sbjct: 181 MQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKF 218


>gi|109898004|ref|YP_661259.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas
           atlantica T6c]
 gi|109700285|gb|ABG40205.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas
           atlantica T6c]
          Length = 91

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 21/76 (27%), Gaps = 1/76 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN- 255
             +K  +  +    +        +K +        G         +   F +++ K +  
Sbjct: 11  KTEKEAQQLKAQLDKGANFQQLAKKHSLCPSGKKGGDLGEFSPGTMVKAFDSVVFKKEIL 70

Query: 256 NTTNPYVTQKGVEYIA 271
               P  TQ G   I 
Sbjct: 71  TVHGPVKTQFGYHLIK 86


>gi|119468650|ref|ZP_01611702.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Alteromonadales
           bacterium TW-7]
 gi|119447706|gb|EAW28972.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Alteromonadales
           bacterium TW-7]
          Length = 92

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 24/75 (32%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           ++  +D  +   +  K     +K++S       G         + PQF  +         
Sbjct: 15  KEIAEDIIKQLGKGAKFQTLAKKYSSCPSGKKGGDLGEFRRGQMVPQFDKIAFNGAILEP 74

Query: 259 NPYVTQKGVEYIAIC 273
           +   T+ G   I + 
Sbjct: 75  HLVKTKFGWHVIKVL 89


>gi|238021983|ref|ZP_04602409.1| hypothetical protein GCWU000324_01888 [Kingella oralis ATCC 51147]
 gi|237866597|gb|EEP67639.1| hypothetical protein GCWU000324_01888 [Kingella oralis ATCC 51147]
          Length = 610

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/165 (9%), Positives = 46/165 (27%), Gaps = 7/165 (4%)

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
            D   K    + EI A     K     +  +  +L   P +         +   +   + 
Sbjct: 222 KDIAGKQSVSDAEIEAAYNASKGSLKPKRRVSHILIEAPKSADAATREKARAEAEKIAAE 281

Query: 210 LRL--PKDCNKLEKFASKI-HDVSIGKAQYLLESD---LHPQFQNLLKKSQNNTTNPYVT 263
            +    +     ++ +  +    + G    + +                ++   +    +
Sbjct: 282 AKAHPEQFAEIAKRASQDVGSAANGGDLGEIAQDGKIGSKALEDAAFALNKGEVSGVVES 341

Query: 264 QKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
             G   + + D  D+    A K  + +     K ++   +  + L
Sbjct: 342 DFGYHVLRVTDIADVSL-AAQKDSIRSSLQAKKAQQEYNKQREAL 385



 Score = 51.6 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/216 (11%), Positives = 62/216 (28%), Gaps = 4/216 (1%)

Query: 5   VFTSLSDFIK--LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIAL 62
           +F S++ F     +    + + F     VS +  +  + I   +  ++IT   + + +  
Sbjct: 1   MFHSVNKFRTPVTILLSLIAVSFMGYGFVSLQGISRDNYIV-KVGDQIITRYALDQAVQN 59

Query: 63  LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
            +         +   Q L+      +  ++ GI      +    V + +    S +    
Sbjct: 60  TEA-AGEPASREAVFQTLLQRAYLLEGAKQLGIVVSDEQIKQIVVDNPQFHDTSGKFDPK 118

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
                       ++           V         N   +  A +     +  R      
Sbjct: 119 LFQAYLTNTRQSEESFMQAQRENLSVAALLQTLNSNAVSDFQAQQVINAVLAPRSTRAYV 178

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
           +      +K++      K+  +A +    LP+    
Sbjct: 179 LNPQAFADKVKADDAALKKYYEANKKDYLLPQGAKF 214


>gi|91087021|ref|XP_974228.1| PREDICTED: similar to peptidyl-prolyl cis-trans isomerase
           [Tribolium castaneum]
 gi|270010516|gb|EFA06964.1| hypothetical protein TcasGA2_TC009923 [Tribolium castaneum]
          Length = 128

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------L 249
             Q +  +A E      K       ++        G   ++    +   FQ+        
Sbjct: 43  EKQGKCLEALEKLKAGQKFPEVAAAYSED-KARQGGDLGWMTRGSMVGPFQDAAFALPVS 101

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKR 276
              +   T  P  T+ G   I +  K+
Sbjct: 102 NVNNPVYTDPPVKTKFGYHIIMVEGKK 128


>gi|324997548|ref|ZP_08118660.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudonocardia sp.
           P1]
          Length = 475

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/293 (9%), Positives = 79/293 (26%), Gaps = 24/293 (8%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA-VQE------------LIVETLK 86
             +    +G+ +T  D+++++  L       + ++ A +              ++++   
Sbjct: 164 DDVAFRADGQDVTVEDLNRQMDTLSALYGMTKPQEPAELDTYQRDFAKASAIGMVIDRAA 223

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
            +           + +  +  Q+  N   +   F   L + G  +      +  Q     
Sbjct: 224 AERGIVVAERAAQDYLGRYIEQYFGNGADARAAFVEALGQAGTSEPAVLGEIKRQMAAAQ 283

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           + +          + ++       ++              + D     Q     +     
Sbjct: 284 LFQQVTADIPQVTDADVETAFGDRRDALAMPERRAVSNIVVRDEAAAQQILGDLQGGRPF 343

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT-NPYVTQK 265
               R         + A      + G    L  + L   F +    ++ N    P  TQ 
Sbjct: 344 ADVAR--------ARSADAATREAGGAIGTLAAAQLEKPFADAAFGAEPNVPFGPVKTQH 395

Query: 266 GVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           G     + + +         ++  L  +    +       ++     +A + Y
Sbjct: 396 GWNVGVVSEVQAAVPADLQTVREPLRQRLQGERSADAWQAFLGNRLDDAGVRY 448


>gi|315586661|gb|ADU41042.1| SurA domain protein [Helicobacter pylori 35A]
          Length = 405

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 89/289 (30%), Gaps = 37/289 (12%)

Query: 34  KSWAMSSRIR----TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
               +  ++       +NG  IT   I +       Q+ +   +  A   LI E +K QE
Sbjct: 141 AGSTLEDKVVGGISLLVNGSPITLYQIQEE------QEKSKVSKAQARDRLIAERIKNQE 194

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
           IE+  I  D + ++      A+  G+  + F   L  +G     ++  L       ++++
Sbjct: 195 IERLKIHVDDDKLDQEMAMMAQQQGMDLDHFKQMLMAEGHYKL-YRDQLKEHLEMQELLR 253

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
           N  +                              +         NQ  +++ + +     
Sbjct: 254 NILLTNVDTSSETKMREYYNKHKEQFSIPTEIETVRY----TSTNQEDLERAMSNPNLEV 309

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKG--- 266
             + K   K                  +    L+PQ   +    +  +  P +   G   
Sbjct: 310 PGVSKANEK------------------IEMKTLNPQIAQVFISHEQGSFTPIMNGGGGQF 351

Query: 267 -VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              YI     ++       K +++ +      +K   E+ +KLR  + I
Sbjct: 352 ITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEKLRVKSRI 400


>gi|297519828|ref|ZP_06938214.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
           OP50]
          Length = 141

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/140 (11%), Positives = 38/140 (27%), Gaps = 17/140 (12%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     ++     +N + I+ G      
Sbjct: 1   MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNY-AAKVNDQEISRGQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119

Query: 105 FFVQHARNTGLSAEDFSSFL 124
                         D S + 
Sbjct: 120 AIFATPAFQVDGKFDNSRYN 139


>gi|156935892|ref|YP_001439808.1| hypothetical protein ESA_03780 [Cronobacter sakazakii ATCC BAA-894]
 gi|161505574|ref|YP_001572686.1| hypothetical protein SARI_03744 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|311281540|ref|YP_003943771.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterobacter cloacae
           SCF1]
 gi|156534146|gb|ABU78972.1| hypothetical protein ESA_03780 [Cronobacter sakazakii ATCC BAA-894]
 gi|160866921|gb|ABX23544.1| hypothetical protein SARI_03744 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|308750735|gb|ADO50487.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterobacter cloacae
           SCF1]
          Length = 93

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +K   D  E            +K +        G      +  + P F + +      
Sbjct: 13  KEEKLALDLLEQIKNGGDFEKLAKKHSICPSGKKGGHLGEFRQGQMVPAFDKVVFSCPVL 72

Query: 256 NTTNPYVTQKGVEYIAIC 273
             T P  TQ G   I + 
Sbjct: 73  EPTGPLHTQFGYHIIKVL 90


>gi|256084172|ref|XP_002578305.1| rotamase [Schistosoma mansoni]
 gi|238663674|emb|CAZ34543.1| rotamase, putative [Schistosoma mansoni]
          Length = 1421

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 8/87 (9%)

Query: 197  FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK---- 252
              Q +  +A E      +     E ++      S G   ++    +   FQ+        
Sbjct: 1336 EKQSKCLEALEQLKNGKRFNQVAEIYSED-KARSGGDLGWMSRGSMVGAFQDAAFNLPIS 1394

Query: 253  ---SQNNTTNPYVTQKGVEYIAICDKR 276
               +   T  P  TQ G   I +  +R
Sbjct: 1395 TLENPKYTDPPVKTQYGYHIIMVEGRR 1421


>gi|170585656|ref|XP_001897598.1| parvulin-type peptidyl-prolyl cis-trans isomerase, Bm parvulin
           [Brugia malayi]
 gi|158594905|gb|EDP33482.1| parvulin-type peptidyl-prolyl cis-trans isomerase, Bm parvulin
           [Brugia malayi]
          Length = 126

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             Q +  +A E      K       ++        G   ++    +   FQ+      N+
Sbjct: 41  EKQGKAMEAIEKLKSGSKFNEVAANYSED-KAKLGGDLGWMTRGSMVGTFQDAAFALPNS 99

Query: 257 TT-------NPYVTQKGVEYIAICDKR 276
           T         P  TQ G   I +  K+
Sbjct: 100 TVDRPVYTDPPVRTQFGYHIIMVEAKK 126


>gi|317178978|dbj|BAJ56766.1| hypothetical protein HPF30_0669 [Helicobacter pylori F30]
          Length = 416

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 89/289 (30%), Gaps = 37/289 (12%)

Query: 34  KSWAMSSRIR----TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
               +  ++       +NG  IT   I +       Q+ +   +  A   LI E +K QE
Sbjct: 152 AGSTLEDKVVGGISLLVNGSPITLYQIQEE------QEKSKVSKAQARDRLIAERIKNQE 205

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
           IE+  I  D + ++      A+  G+  + F   L  +G     ++  L       ++++
Sbjct: 206 IERLKIHVDDDKLDQEMAMMAQQQGMDLDHFKQMLMAEGHYKL-YRDQLKEHLEMQELLR 264

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
           N  +                              +         NQ  +++ + +     
Sbjct: 265 NILLTNVDTSSETKMREYYNKHKEQFSIPTEIETVRY----TSTNQEDLERAMSNPNLEV 320

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKG--- 266
             + K   K                  +    L+PQ   +    +  +  P +   G   
Sbjct: 321 PGVSKANEK------------------IEMKTLNPQIAQVFISHEQGSFTPIMNGGGGQF 362

Query: 267 -VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              YI     ++       K +++ +      +K   E+ +KLR  + I
Sbjct: 363 ITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEKLRVKSRI 411


>gi|254372658|ref|ZP_04988147.1| hypothetical protein FTCG_00222 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254374119|ref|ZP_04989601.1| peptidylprolyl isomerase [Francisella novicida GA99-3548]
 gi|151570385|gb|EDN36039.1| hypothetical protein FTCG_00222 [Francisella novicida GA99-3549]
 gi|151571839|gb|EDN37493.1| peptidylprolyl isomerase [Francisella novicida GA99-3548]
          Length = 92

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 10/81 (12%), Positives = 22/81 (27%), Gaps = 2/81 (2%)

Query: 197 FVQKRIKDAEESRLRLP-KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQ 254
             +   +  ++              K +        G      +  + P+F + +     
Sbjct: 11  QSESECQQIKKDITEGKITFEEAARKHSLCPSGARGGDLGTFSQGQMVPEFDRVVFNDEL 70

Query: 255 NNTTNPYVTQKGVEYIAICDK 275
           N    P  TQ G   + I  +
Sbjct: 71  NKVHGPVQTQFGYHLLEITSR 91


>gi|119945335|ref|YP_943015.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas
           ingrahamii 37]
 gi|119863939|gb|ABM03416.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas
           ingrahamii 37]
          Length = 92

 Score = 58.5 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 9/75 (12%), Positives = 25/75 (33%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +++  +      +  K     +K+++       G      +  + P F  +    +  T 
Sbjct: 15  KEKADEILLQLKKGAKFQILAKKYSTCPSGKKGGDLGEFKKGQMVPAFDKVAFTGEILTP 74

Query: 259 NPYVTQKGVEYIAIC 273
           +   T+ G   I + 
Sbjct: 75  HLVKTKFGWHVIKVL 89


>gi|308063548|gb|ADO05435.1| hypothetical protein HPSAT_03485 [Helicobacter pylori Sat464]
          Length = 416

 Score = 58.1 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 84/288 (29%), Gaps = 35/288 (12%)

Query: 34  KSWAMSSRIR----TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
            +  +  ++       +NG  IT   I +       Q+ +   +  A   LI E +K QE
Sbjct: 152 ANSTLEDKVVGGISLLVNGSPITLYQIQEE------QEKSKVSKAQARDRLIAERIKNQE 205

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
           IE+  I  D + ++      A+  G+  + F   L  +G     ++  L       ++++
Sbjct: 206 IERLKIHVDDDKLDQEMAMMAQQQGMDLDHFKQMLMAEGHYKL-YRDQLKEHLEMQELLR 264

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
           N  +        E    +   K+                    ++               
Sbjct: 265 NILLTNVDTSS-ETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMSNPNLEIPGV 323

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY 269
            +  +                       +++      Q  +   Q + T       G   
Sbjct: 324 SKANEKIE--------------------MKTLNPQIAQVFISHEQGSFTPVMNGGGGQFI 363

Query: 270 ---IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              I     ++       K +++ +      +K   E+ +KLR  + I
Sbjct: 364 TFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEKLRVKSRI 411


>gi|88801073|ref|ZP_01116621.1| peptidyl-prolyl cis-trans isomerase C [Reinekea sp. MED297]
 gi|88776212|gb|EAR07439.1| peptidyl-prolyl cis-trans isomerase C [Reinekea sp. MED297]
          Length = 94

 Score = 58.1 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 9/81 (11%), Positives = 23/81 (28%), Gaps = 1/81 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN- 255
             ++  +  +    R         ++++       G         +   F +++ K    
Sbjct: 14  KTREEAEKLKARLQRGEDFAKLARRYSTCPSAKKGGDLGEFRRGQMAKPFDDVVFKKAEL 73

Query: 256 NTTNPYVTQKGVEYIAICDKR 276
               P  T+ G   I    +R
Sbjct: 74  EIHGPVKTRFGFHLIQTLYRR 94


>gi|224103965|ref|XP_002313264.1| predicted protein [Populus trichocarpa]
 gi|222849672|gb|EEE87219.1| predicted protein [Populus trichocarpa]
          Length = 296

 Score = 58.1 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 9/92 (9%), Positives = 26/92 (28%), Gaps = 1/92 (1%)

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIA 271
                +   +++        G   ++ +  + P+F+     +  N      T+ G   + 
Sbjct: 116 GEDLSDLAVEYSLCPSKEEGGMLGWVRKGQMVPEFEEAAFSAPLNKVVRCKTKFGWHLLQ 175

Query: 272 ICDKRDLGGE-IALKAYLSAQNTPTKIEKHEA 302
           +  +R+           L  +       K   
Sbjct: 176 VISEREESLLGEIQADELHVKIQDPTFAKEAQ 207


>gi|71278338|ref|YP_270156.1| peptidyl-prolyl cis-trans isomerase C [Colwellia psychrerythraea
           34H]
 gi|71144078|gb|AAZ24551.1| peptidyl-prolyl cis-trans isomerase C [Colwellia psychrerythraea
           34H]
          Length = 92

 Score = 58.1 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 9/76 (11%), Positives = 20/76 (26%), Gaps = 1/76 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-N 255
             +K   + +    +        +K +        G         +   F +++ K    
Sbjct: 12  KTEKLAVELKTQLDKGANFGALAKKHSLCPSKKKGGDLGEFRRGQMVKAFDDVVFKRPLL 71

Query: 256 NTTNPYVTQKGVEYIA 271
               P  T+ G   I 
Sbjct: 72  KVHGPIKTKFGYHLIK 87


>gi|225012326|ref|ZP_03702762.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteria
           bacterium MS024-2A]
 gi|225003303|gb|EEG41277.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteria
           bacterium MS024-2A]
          Length = 704

 Score = 58.1 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 58/226 (25%), Gaps = 17/226 (7%)

Query: 52  TDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
           T+ D+S     L   K             + +TL+     K+   F        F    R
Sbjct: 246 TEDDLSSIRLRLDALKEERVAYNDV--SKLTDTLEGFRSTKNIADFIDEYSEESFDSVYR 303

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
             G    +++  L K   G+               ++            + I  N     
Sbjct: 304 ARGEFNNEYADILFKLSKGEVFGPYRDRGDFKISRLIDRKVNASLRASHILIAFNGATRA 363

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
              V                        +  +  + +R         + +++        
Sbjct: 364 PSEV---------------SRTKAEAKSEANRVYKMARRASSDFEALVREYSDGPTKTRG 408

Query: 232 GKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
           G   +  E D+  +  N   K++        T+ G   + + DK D
Sbjct: 409 GDLGFFREGDMAQELFNFTNKNKVGNIGLVETEFGFHIVKVTDKDD 454


>gi|120602307|ref|YP_966707.1| hypothetical protein Dvul_1261 [Desulfovibrio vulgaris DP4]
 gi|120562536|gb|ABM28280.1| conserved hypothetical protein [Desulfovibrio vulgaris DP4]
          Length = 328

 Score = 58.1 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/306 (9%), Positives = 87/306 (28%), Gaps = 28/306 (9%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE------LEK 74
           VL +  ++        A+   +  T+NG  +    +              E      L  
Sbjct: 17  VLAVTLLLSAGGCADDALPPGVVATVNGHPVNMKLLQATHDAYAQSWTGAEGPSVEALRS 76

Query: 75  I---AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
                + +L+V+ L  Q++   G +     +     +           F + L +  +  
Sbjct: 77  QYGAVLADLVVQELVLQKLAAVGASVTDAELGAA--EAEVRGDYPEGMFEAALVEDYLDL 134

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
             +++ L  +       +     +      E+ +  +  +        +R ++       
Sbjct: 135 EVWREMLRRRLALTKFAQVVLRSEVAISLEEVESWYRAHQGEFRLAARVRFIM------- 187

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
                 V+   ++  E+           E+       +S  +   +    +   +Q  L 
Sbjct: 188 ------VEGDTREGVEAATGAVASGAAPEEVEKAFPGMSGNEL-LIRRDRIPAAWQKALA 240

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY--LSAQNTPTKIEKHEAEYVKKL 308
                  + P   +       + +         + AY  +  +    K++     +V++ 
Sbjct: 241 ALKPGGVSPPIAFEGRWVAFRLIESLPAQDMSVVDAYPVIERRLLEEKLDAAFDVWVERN 300

Query: 309 RSNAII 314
            + A +
Sbjct: 301 LAGAKV 306


>gi|317012477|gb|ADU83085.1| hypothetical protein HPLT_03295 [Helicobacter pylori Lithuania75]
          Length = 419

 Score = 58.1 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 88/288 (30%), Gaps = 35/288 (12%)

Query: 34  KSWAMSSRIR----TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
               +  ++       +NG  IT   I +       Q+ +   +  A   LI E +K QE
Sbjct: 155 AGNTLEDKVVGGISLLVNGSPITLYQIQEE------QEKSKVSKAQARDRLIAERIKNQE 208

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
           IE+  I  D + ++      A+  G+  + F   L  +G     ++  L       ++++
Sbjct: 209 IERLKIHVDDDKLDQEMAMMAQQQGMDLDHFKQMLMAEGHYKL-YRDQLKEHLEMQELLR 267

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
           N  +                              +         NQ  +++ + D     
Sbjct: 268 NILLTNVDTSSETKMREYYNKHKEQFSIPTEIETVRY----TSTNQEDLERAMTDPNLEI 323

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY 269
             + K   K+E                 +++      Q  +   Q + T       G   
Sbjct: 324 PGVSKANEKIE-----------------MKTLNPQIAQVFISHEQGSFTPVMNGGGGQFI 366

Query: 270 ---IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              I     ++       K +++ +      +K   E+ +KLR  + I
Sbjct: 367 TFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEKLRVKSRI 414


>gi|257470876|ref|ZP_05634966.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium ulcerans ATCC
           49185]
 gi|317065078|ref|ZP_07929563.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313690754|gb|EFS27589.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 584

 Score = 58.1 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/267 (10%), Positives = 74/267 (27%), Gaps = 16/267 (5%)

Query: 56  ISKRIALLKLQKINGELEKIAVQELIVETL-----KKQEIEKSGITFDSNTVNYFFVQHA 110
           + K    +KL+ ++ E +    +  + E        +         F +N       + +
Sbjct: 219 LDKARKNMKLENVSQEYKAYVERNEMEEDGFAVSNIEMAKRTLNNLFITNGDRDKARELS 278

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
           +    +    +    ++GI  +           +   +  +        + ++    +K 
Sbjct: 279 KEYYRAQIKLAKIAIERGITVDETLPLDYKFEEYKKGLFENIKNSLNPSDAQLKEYFEKN 338

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS 230
           K +        + +  +  +         K   +     L         +K +      +
Sbjct: 339 KLVYDTFPSSDSYIAILKVDASAEDKAAAKAKAEELLKTLTPENFAEVAKKNSDGPSSPN 398

Query: 231 IGKAQYLLESDLHPQFQNLLKKSQNN--TTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
            G   +  + D+   FQ  +   +       P  T  G   I I D++    +   +A  
Sbjct: 399 GGDLGWFSKKDMVEPFQKAVFSGEVGKIYPQPVETIFGEHLIYIEDRK----DDEERAKA 454

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           S      K+ +            A I 
Sbjct: 455 SHILIVPKVSEATINI-----KKAEIE 476


>gi|206580185|ref|YP_002237552.1| nitrogen fixation protein NifM [Klebsiella pneumoniae 342]
 gi|206569243|gb|ACI11019.1| nitrogen fixation protein NifM [Klebsiella pneumoniae 342]
          Length = 266

 Score = 58.1 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 10/163 (6%), Positives = 40/163 (24%), Gaps = 3/163 (1%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
              +    +                    R     +      +Q    +  +   +    
Sbjct: 98  IASQAPRPDPATVQAWYLRHQAQFMRPEQRLTRHLLLTVDGDDQTVYSRIRELHGQIEAS 157

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYI 270
                   ++ +     +  G   ++    L     + L   ++N  + P  ++ G   +
Sbjct: 158 REAFAPLAQRHSHCPSALDGGLLGWIGRGLLYPQLEEALFALAENALSAPVASELGWHLV 217

Query: 271 AICDKRDLGGEIALK--AYLSAQNTPTKIEKHEAEYVKKLRSN 311
                R        +         +     +H+ +++ ++ + 
Sbjct: 218 WCEAIRPAAPMTPEQALESARDYLSQQSQRRHQRQWLAEMLAR 260


>gi|42521061|ref|NP_966976.1| hypothetical protein WD1266 [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410802|gb|AAS14910.1| hypothetical protein WD_1266 [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 399

 Score = 58.1 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 82/245 (33%), Gaps = 22/245 (8%)

Query: 37  AMSSRIRTTINGEVITDGDISKRIALLK-----LQKINGELEKIAVQELIVETLKKQEIE 91
           A    I   +NGE I++ DI KRI  +            E +   ++ELI E +   E +
Sbjct: 36  ATEIEIVADVNGEPISNLDIEKRINFINSLFGTQSVNQKEAKPQVLRELIDEIIIINEAQ 95

Query: 92  KSGITFDSNTVNYFFVQHARN-TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
           +  I   +  ++   +        L A +   +++K  I     ++ +  Q +W  +++ 
Sbjct: 96  RLNIKLSNEELDNAIMLFLTQSFKLKANEVDQYIEKHNIDLGILRKQIKCQLLWGKIIEV 155

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
             +      + E+   K++ +           ++    D  +        +     ++  
Sbjct: 156 RIVPFINISDKEVDDVKRQTEKPDYLITFQEFIIPDQKDKDVYGIAEDLVKKLRNSDNPE 215

Query: 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYI 270
              K        +        GK + +LE               ++   P+   +G   I
Sbjct: 216 SPIKMRKATVNLSQL-----KGKLKSVLEG-----------LETSDIAGPFSFSEGYSVI 259

Query: 271 AICDK 275
            + DK
Sbjct: 260 KVIDK 264


>gi|227508896|ref|ZP_03938945.1| peptidylprolyl isomerase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227191657|gb|EEI71724.1| peptidylprolyl isomerase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 295

 Score = 58.1 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/288 (11%), Positives = 71/288 (24%), Gaps = 40/288 (13%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           ++   FV++      ++       S     TING  IT     + +        +    +
Sbjct: 2   IMKKGFVILAGIGAGLILSACSNQS---VATINGSNITKDAYYQEMK-------DSPSGQ 51

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
            A+ ++I++   +   ++ G    +  V        +  G S              +   
Sbjct: 52  QALGQMILDKGLE---KQYGNKVKNTAVTRQLNTVKKQYGASFGA-------FLTQNGLT 101

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                       +++             +    +                +       Q 
Sbjct: 102 ASQYKRNLKEDLLLRAAIKADTKFTPDMLKQQFK---------------HYQPKVTVNQI 146

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYL--LESDLHPQFQNLLK 251
               +   +                  +++        G+        + L P F+    
Sbjct: 147 LVSKKATAQKVINQLNAGHSFAKLAAAYSTDTATKKKSGRISPFDNTNTTLDPNFKKAAF 206

Query: 252 K-SQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
           K      T  P  TQ G E I + +    G     K  L  Q   TK 
Sbjct: 207 KLKTGQYTKTPVKTQYGYEVIQMVNHPAKGTYQNHKEALKNQIVDTKA 254


>gi|261839514|gb|ACX99279.1| peptidoglycan-associated lipoprotein precursor [Helicobacter pylori
           52]
          Length = 426

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 89/289 (30%), Gaps = 37/289 (12%)

Query: 34  KSWAMSSRIR----TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
               +  ++       +NG  IT   I +       Q+ +   +  A   LI E +K QE
Sbjct: 162 AGSTLEDKVVGGISLLVNGSPITLYQIQEE------QEKSKVSKAQARDRLIAERIKNQE 215

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
           IE+  I  D + ++      A+  G+  + F   L  +G     ++  L       ++++
Sbjct: 216 IERLKIHVDDDKLDQEMAMMAQQQGMDLDHFKQMLMAEGHYKL-YRDQLKEHLEMQELLR 274

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
           N  +                              +         NQ  +++ + +     
Sbjct: 275 NILLTNVDTSSETKMREYYNKHKEQFSIPTEIETVRY----TSTNQEDLERAMSNPNLEV 330

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKG--- 266
             + K   K                  +    L+PQ   +    +  +  P +   G   
Sbjct: 331 PGVSKANEK------------------IEMKTLNPQIAQVFISHEQGSFTPIMNGGGGQF 372

Query: 267 -VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              YI     ++       K +++ +      +K   E+ +KLR  + I
Sbjct: 373 ITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEKLRVKSRI 421


>gi|270290459|ref|ZP_06196684.1| foldase prsA [Pediococcus acidilactici 7_4]
 gi|304384659|ref|ZP_07367005.1| peptidyl-prolyl cis-trans isomerase [Pediococcus acidilactici DSM
           20284]
 gi|270281240|gb|EFA27073.1| foldase prsA [Pediococcus acidilactici 7_4]
 gi|304328853|gb|EFL96073.1| peptidyl-prolyl cis-trans isomerase [Pediococcus acidilactici DSM
           20284]
          Length = 300

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/310 (11%), Positives = 79/310 (25%), Gaps = 45/310 (14%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
            +K +   F  I                 +   T +G  IT  +    +           
Sbjct: 3   LMKKVLLGFASIAMAFTLAACGS------KTVATTSGGKITQDEYYSSLKDTSN------ 50

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
             K  +QE+IV  + +++          +          +      + + S        +
Sbjct: 51  -GKQVLQEMIVNKVLEKQYGDKVTKKVVD----------KQYNAYKDQYGSSFKDILASN 99

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
              +  L  Q     ++K            ++    +  +                    
Sbjct: 100 GMTEASLRKQIRSNALLKEAVKDNDKISSSDLKKEWKSYQPK---------------VTV 144

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS-IGKAQYL--LESDLHPQFQN 248
            Q     +   +D  +            +K+++     +  GK        + L   F++
Sbjct: 145 AQILVSKKSTAEDVIKQLNDGKDFAKLAKKYSTDSSSKNKGGKIAPFDDTNTTLDSDFKD 204

Query: 249 LLKKSQNN--TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH--EAEY 304
              K      TT P  TQ G + I + DK   G        L  +     +       + 
Sbjct: 205 AAFKLDEGKYTTKPVKTQYGYQVIKMLDKPAKGKMSDHTKELKERIWNKDMSDAPTLRKV 264

Query: 305 VKKLRSNAII 314
           + K+     +
Sbjct: 265 ITKVLKKGNV 274


>gi|213586381|ref|ZP_03368207.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 102

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 9/102 (8%), Positives = 29/102 (28%), Gaps = 5/102 (4%)

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNN 256
            Q++ +   E              +++    +  G+  +    +L   F        + +
Sbjct: 1   AQRQAESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGD 60

Query: 257 TTNPYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTP 294
              P  +  G   + + D R     +        ++  + + 
Sbjct: 61  IVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSA 102


>gi|58584292|ref|YP_197865.1| parvulin-like peptidyl-prolyl isomerase, SurA [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
 gi|58418608|gb|AAW70623.1| Parvulin-like peptidyl-prolyl isomerase, SurA [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 384

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 79/245 (32%), Gaps = 19/245 (7%)

Query: 37  AMSSRIRTTINGEVITDGDISKRIALL-----KLQKINGELEKIAVQELIVETLKKQEIE 91
           A+   I   +NGE I++ DI KRI L             EL+   +++LI E +   E +
Sbjct: 18  AVEIEIIADVNGEPISNLDIEKRINLTHSLFGTQSIDKNELKLQILKQLIDEIIIINEAQ 77

Query: 92  KSGITFDSNTVNYFFVQHARN-TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
           +  I      ++   V        L   +   +  +  IG N  K+ +  Q +W  +++ 
Sbjct: 78  RLNIKLSDEELSNAVVLFLTQSFKLKDNEVDQYAKEHNIGLNILKRQIECQLLWDKIIEV 137

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
             +      + E+  N  K +       +                G  +  ++    +  
Sbjct: 138 RIVPFINISDKEV--NNAKGQIEKPDYLITFQEFIIPNQKDADVYGIAEDLVEKLRNNNN 195

Query: 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYI 270
               +     +  +   +   G  + +LE                +   P  + +    +
Sbjct: 196 DFIPEAPIKMRKVTVNLNQLKGNLKSILEG-----------LKTGDIAGPVSSSEDYSIV 244

Query: 271 AICDK 275
            + DK
Sbjct: 245 KVIDK 249


>gi|77362220|ref|YP_341794.1| peptidyl-prolyl cis-trans isomerase C (rotamase C)
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76877131|emb|CAI89348.1| peptidyl-prolyl cis-trans isomerase C (rotamase C)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 92

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 23/75 (30%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           ++  +D      +  K     +K++S       G         + PQF  +         
Sbjct: 15  KEIAEDIITQLGKGAKFQTLAKKYSSCPSGKKGGDLGEFRRGQMVPQFDKIAFNGAILEP 74

Query: 259 NPYVTQKGVEYIAIC 273
           +   T+ G   I + 
Sbjct: 75  HLVKTKFGWHVIKVL 89


>gi|270264226|ref|ZP_06192493.1| hypothetical protein SOD_g01590 [Serratia odorifera 4Rx13]
 gi|270041875|gb|EFA14972.1| hypothetical protein SOD_g01590 [Serratia odorifera 4Rx13]
          Length = 93

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 21/76 (27%), Gaps = 1/76 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           +K   D      R         K++S     + G      +  +   F + +        
Sbjct: 15  EKLANDLLAKLKRGVSFDTLARKYSSCPSKRNGGALGEFNKGTMVAAFDKAVFSIPLLKP 74

Query: 258 TNPYVTQKGVEYIAIC 273
             P  TQ G   I + 
Sbjct: 75  YGPVKTQFGYHIIKVL 90


>gi|261406730|ref|YP_003242971.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           Y412MC10]
 gi|261283193|gb|ACX65164.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           Y412MC10]
          Length = 363

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/349 (9%), Positives = 103/349 (29%), Gaps = 36/349 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K F SL           +++   ++   ++           T++G  I   +  + I
Sbjct: 4   MVHK-FCSLKWLFIAGFFILIVVTILLIAKPAFTQTHHEDAYIATVDGVEIHVSEFQRAI 62

Query: 61  ALLKL--------------------------QKINGELEKIAVQELIVET--LKKQEIEK 92
              +                           +     ++K A+++ I +       + ++
Sbjct: 63  DANRAGIIKYFHEKYDAAPSAAFWTTPYGGNEIPLELIKKKALEDSINQKIRQILAKEQE 122

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS---IWPDVVK 149
                        F    +    + ++           +  + +Y+   +   +   +++
Sbjct: 123 VLPDISYAGFIQNFNLENQRRQQAIKNHQVIFGPAQYTEEAYYEYMMANTALSVKNHLME 182

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
           +D+      L     ANK+++ +      + +  L  +  N+  +     +  +  E++R
Sbjct: 183 HDWKPSEQQLITFYEANKRRLYHAPATVKVRQLSLSFLDANRNVDTLLKTQVKRKIEKAR 242

Query: 210 LRLPKDCNKLEKFASKIHDVSIGK----AQYLLESDLHPQFQNLLKKSQNNTTNPYVTQK 265
            ++    +  +       D  + +          +   P  Q          +       
Sbjct: 243 EKISSGISFEQAVKDIKQDDRVTEEVYNLDSYRHNVRSPVAQASADLLPGEVSEIIEENG 302

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
               +   +K  LG +      +  Q     I+    +YV++  ++A +
Sbjct: 303 RFYLMQCMEKDQLGSKYLAFDGIREQVLKDYIDNQYEQYVRERLTDAKV 351


>gi|295700334|ref|YP_003608227.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1002]
 gi|295439547|gb|ADG18716.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1002]
          Length = 250

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/270 (11%), Positives = 68/270 (25%), Gaps = 26/270 (9%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              I+ EV+   D+ + I LLKL            + LI + ++ +    +         
Sbjct: 4   IVRIDDEVV---DVDEFIRLLKLTGQ--------FESLIEQIVRDKLTVHAAKKQGVTVS 52

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                Q A           +      +   H         I   + +   +      +  
Sbjct: 53  ADEIQQRADQFRRVRGLHRAADMNHYLDALHVSLDEFEVFITDGLYQEKMLDDI-GNDAA 111

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           I               +   VL S             K  +             +   + 
Sbjct: 112 IRDYFALNSPKFDAIEVSHIVLDSEG-----------KAKEMISYLHDDPDAFADMAREH 160

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQ-NLLKKSQNNTTNPYVTQKG--VEYIAICDKRDLG 279
           +      S G    +L   L P  +  +   +  +   P+ +      E  A+  K    
Sbjct: 161 SIADTRESGGVIGKVLRGSLKPDIEAKIFNAAVGDLLGPFPSADRSCFEIFAVTAKYPAT 220

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
            +  +   +      + +     E+V + R
Sbjct: 221 LDADVATEIRRLLRESWLIARAQEHVIEAR 250


>gi|322420018|ref|YP_004199241.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
 gi|320126405|gb|ADW13965.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
          Length = 93

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 8/80 (10%), Positives = 17/80 (21%), Gaps = 1/80 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             ++     +                +        G         +  +F + +      
Sbjct: 12  ATEEACIALKSQIEAGADFAEVARANSLCPSGNQGGLLGEFGPGQMVREFDEVVFSGEVG 71

Query: 256 NTTNPYVTQKGVEYIAICDK 275
               P  TQ G   I I  +
Sbjct: 72  KVLGPVKTQFGYHLIEITSR 91


>gi|170749508|ref|YP_001755768.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656030|gb|ACB25085.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 633

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/402 (8%), Positives = 94/402 (23%), Gaps = 89/402 (22%)

Query: 1   MTSKVFTSLSDFI-KLLTTYFVLIIFCIVPIVSYKSW--AMSSRIRTTINGEVITDGDIS 57
           M   +  +   ++ K++ T    ++   V I   + +    +S    T+    IT   + 
Sbjct: 1   MLQGIRNASQHWLGKIVLTIIFTLLIAGVGIFGVEEFFRGGASNKVATVGSTPITAEQVR 60

Query: 58  KRIALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           +       +                  L++  + +LI E    Q+    G+     +V  
Sbjct: 61  QAYQNQLQRYQTQLKRPLTPDQARMLGLDRQVMSQLITEAALDQKTHDLGLAVPDASVIK 120

Query: 105 FFVQHA--RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK------- 155
              +    +N     E    +   Q  G N        +S+   +   + +         
Sbjct: 121 AIHEEKSFQNQQGQFEPQLFYQTLQRAGLNEGLFVREQRSVIARLQLAEAVSSDLHVPLA 180

Query: 156 ----------------------------YGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
                                           + E+    +  K+           L  +
Sbjct: 181 MREAVHRYTTERRAAAYLMLTPSVAGQIPDPTDDELKTWYEANKSGFRAPEFRSVNLLVV 240

Query: 188 PDNKLQNQGF------------------------VQKRIKDAEESRLRLPKDCNKLEKFA 223
               +                             +Q+ +     +     K      K  
Sbjct: 241 EPEAMAKPDAITEADARAAYALNKDRYGTPEKRTIQQIVFPDAAAAEAARKAITDGSKTF 300

Query: 224 SKIHDVSIGK-----AQYLLESDL--HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
             +               L +S+L             +   + P   + G   + +    
Sbjct: 301 DAVAAERGTDEKDLTLGTLTKSELFDKAVADAAFALPEGGVSQPVQGRFGTVLLRVTKIE 360

Query: 277 --DLGGEIALKAYLSAQNTPTKIE---KHEAEYVKKLRSNAI 313
              +    A++  +       +     +   + ++  R+ A 
Sbjct: 361 AGTVKPFEAVEGEIRKALALARARDAMETTRDAIEDQRAGAK 402


>gi|332995558|gb|AEF05613.1| peptidyl-prolyl cis-trans isomerase C [Alteromonas sp. SN2]
          Length = 92

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 9/76 (11%), Positives = 21/76 (27%), Gaps = 1/76 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN- 255
             +K      E   +        ++ ++       G         +   F +++ K +  
Sbjct: 12  KTEKEAFAILEQLKKGKDFSTLAKRHSTCPSGKKGGDLGEFRRGQMVKAFDDVVFKKEVL 71

Query: 256 NTTNPYVTQKGVEYIA 271
               P  T+ G   I 
Sbjct: 72  KVHGPVKTRFGYHLIK 87


>gi|325285709|ref|YP_004261499.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cellulophaga lytica
           DSM 7489]
 gi|324321163|gb|ADY28628.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cellulophaga lytica
           DSM 7489]
          Length = 700

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 1/104 (0%)

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
                + +   +KR ++  +   +   +        +        G   Y  +  + P+F
Sbjct: 361 NPEVKRTKEEAKKRAEELLKDAKKGDVEFSVLARDNSDGPSASRGGDLGYSQQGRMTPKF 420

Query: 247 QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA 290
              +  +   T     T+ G   + I DK+DL     L   + A
Sbjct: 421 DEFMFSNNVGTIGMVETEFGFHIVKIDDKQDLVRVATLARAIEA 464



 Score = 44.3 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 31/381 (8%), Positives = 89/381 (23%), Gaps = 68/381 (17%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           +   +    +  I ++       +   +      S   +      ING+ I+     + +
Sbjct: 3   ILENIRKRTTVLILIIGLALFAFVISGIFSADGMSGVKTGTTVAEINGKDISIDKFRREV 62

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
                +   G      V  +  + +K   +         +      +    +    +++ 
Sbjct: 63  EAASNRFGAGATSMQVVNSVWDQEVKNAILSDEFDDLGISIEQDQIINFIASNPGFSQNP 122

Query: 121 SSFLD--------------------KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
               +                             ++   +Q+       N      G   
Sbjct: 123 QYQNENGVFDEYIFKEFISTLKTENPAQYALWLQQEQAIMQAAKEQTYFNLVKAGLGATL 182

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E   + +   +    +Y+          +   ++  +   IKD EE   +      +  
Sbjct: 183 KEGELDYKLANDKIDIKYVRVPYTSIADSSVAVSKDEIAAYIKDHEEDFKQEKARDFQFV 242

Query: 221 KFASKIH-------------------DVSIGKAQYLLESDL------------------- 242
            F  K                     + +     +    ++                   
Sbjct: 243 YFEEKPSLEDEKAVEAKVVSLLNDKVEYNDTILGFRNTKNIEEFLDRNSDLKYDTIYKTK 302

Query: 243 ----HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL------SAQN 292
                     L+  +  +   PY      +   + DK+  G   A    +       A  
Sbjct: 303 NVLSPKFADTLMALNIGDIYGPYRDGNYFKVTKMMDKKKDGNVKASHILVAWEGAERANP 362

Query: 293 TPTKIEKHEAEYVKKLRSNAI 313
              + ++   +  ++L  +A 
Sbjct: 363 EVKRTKEEAKKRAEELLKDAK 383


>gi|296235752|ref|XP_002763032.1| PREDICTED: hypothetical protein LOC100394726 [Callithrix jacchus]
          Length = 235

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/87 (12%), Positives = 24/87 (27%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------L 249
               +I +A E      +      +++        G   ++    +   FQ         
Sbjct: 150 EKHSKIMEAMEKLKSGMRFNEVAAQYSED-KARQGGDLGWMTRGSMVGPFQEAAFALPVS 208

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKR 276
                  T  P  T+ G   I +  ++
Sbjct: 209 GMDKPVFTDPPVKTKFGYHIIMVEGRK 235


>gi|326315452|ref|YP_004233124.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323372288|gb|ADX44557.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 303

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/178 (9%), Positives = 49/178 (27%), Gaps = 11/178 (6%)

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
             ++          +    + ++  +    R      V        +     VQ+  + A
Sbjct: 110 QAIEALLEQAIAVPDPLEESCRRHYEAHAARYRDGERVHLRHILYAVTPGVDVQRLRERA 169

Query: 206 EESRLR-------LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK--KSQNN 256
           E + L+                + ++       G   +L   D  P+F   +   +    
Sbjct: 170 EATLLQLRCADDGGEAFARAARESSNCPTGAEGGDLGWLARGDCAPEFAREVFGAQEVGV 229

Query: 257 TTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
                 ++ G+  + +  +      G   ++  ++             +Y++ L   A
Sbjct: 230 LPRLVHSRFGLHVVEVVARDAGRQRGYGEVREAVALALRQQAWVNALRQYLQVLAGEA 287


>gi|114563785|ref|YP_751298.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           frigidimarina NCIMB 400]
 gi|114335078|gb|ABI72460.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           frigidimarina NCIMB 400]
          Length = 92

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 9/79 (11%), Positives = 27/79 (34%), Gaps = 1/79 (1%)

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT 257
            Q++ +  ++         +  +  +S       G+        +  +F +++  +  N 
Sbjct: 13  TQEQCESLKQQIEAGADFADVAKANSSCPSGAQGGELGSFGPGMMVKEFDDVVFSAPLNV 72

Query: 258 T-NPYVTQKGVEYIAICDK 275
              P  TQ G   + +  +
Sbjct: 73  VQGPVKTQFGFHLLEVTSR 91


>gi|299536706|ref|ZP_07050016.1| hypothetical protein BFZC1_11817 [Lysinibacillus fusiformis ZC1]
 gi|298727820|gb|EFI68385.1| hypothetical protein BFZC1_11817 [Lysinibacillus fusiformis ZC1]
          Length = 323

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/303 (10%), Positives = 81/303 (26%), Gaps = 36/303 (11%)

Query: 6   FTSLSDFIKLLTTYFV--LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL 63
                  + ++    +  ++ F    I +      S      I+G+VIT  +    +   
Sbjct: 24  RLKTKPALAVIAVLLLGNVLWFISWLIPNKGQEIGSDEQVAAIDGDVITRQEWMIAM--- 80

Query: 64  KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
                     K  +Q L+ ET+ ++  +   I      ++                    
Sbjct: 81  -----EERYGKETLQNLVNETVMEKAAKTYKIKVTDKEIDLELALMRS------AQDKFD 129

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
              Q +     +Q +  Q I   V+  D +++  N+E     N+      T        V
Sbjct: 130 TAMQNLSAEQLRQKIRSQLILDKVLTKDVVIEEENVEKYYEENQGLYNTKTSYRTNFIEV 189

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESD- 241
                          +K   +A               + +         G   +L E+  
Sbjct: 190 -------------DSKKAADEALGELKNGSDFTVLAREISVDSASASLGGDIGFLTENQE 236

Query: 242 --LHPQFQNLLKKSQNNTTNPYVTQKGVE-YIAICDKRDLGGE--IALKAYLSAQNTPTK 296
                    +     N  +  +    G    + + +  +        +K ++  +    +
Sbjct: 237 NVDPAIINTVKSLKANEVSKAFKLDNGHYGIVQVQEVLEGQSFTYDDVKEHIERELALEQ 296

Query: 297 IEK 299
           + +
Sbjct: 297 LPQ 299


>gi|242243062|ref|ZP_04797507.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus epidermidis
           W23144]
 gi|242233520|gb|EES35832.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus epidermidis
           W23144]
          Length = 322

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/309 (11%), Positives = 90/309 (29%), Gaps = 30/309 (9%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +  +          +    S  + +  + + ++  G+V     ++  +  +  ++I    
Sbjct: 1   MNKIIVPVTASALLLGACGSNATESKDNTLISSKAGDV----KVADVMKKMGKEQIANTS 56

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
             I + +++ +  K           D+  ++    +  +  G   +  S    +      
Sbjct: 57  FSIVLNKILADKYK--------DKVDTKDIDKDIKKEEKQYGGKDQFESMLKQQ-----G 103

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                   Q       K   + K    + EI        +      LI+    S     L
Sbjct: 104 MSLDDYKEQKKLSAYQKQLLLDKVNVSDKEIK-----ENSKKASHILIKVKSKSSDKEGL 158

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNL-L 250
            ++   +K  K  +E      K     +K +         G   Y+++  +   F+    
Sbjct: 159 SDKKAKEKAEKIQKEVEKNPNKFGEIAKKESMDSSSAKKDGSLGYVIKGQMVDSFEKALF 218

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH---EAEYVKK 307
           K  +   +    T  G   I            + K+ +  +    K++K      +  K+
Sbjct: 219 KLKEGEVSKVVKTDYGYHIIKAD---KETDFNSEKSNIKQKLIEEKVQKKPKLLTDAYKE 275

Query: 308 LRSNAIIHY 316
           L     + Y
Sbjct: 276 LLKEYKVDY 284


>gi|198283164|ref|YP_002219485.1| hypothetical protein Lferr_1036 [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|198247685|gb|ACH83278.1| hypothetical protein Lferr_1036 [Acidithiobacillus ferrooxidans
           ATCC 53993]
          Length = 522

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/229 (10%), Positives = 59/229 (25%), Gaps = 14/229 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWA-MSSRIRTTINGEVITDGDISKR 59
           M          ++       + + F +  +  Y      +S +  T++G+ I+D    KR
Sbjct: 1   MMETFRNFGRSWVAKSLMVLIALSFVLWGVSGYLFSGHSTSSVVATVDGQKISDAAFQKR 60

Query: 60  IALLKLQKI-------------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF 106
           +     +               +       +  LI   L   E  + G+      +    
Sbjct: 61  MKDALARYSHIFGATTAAKMAADRSFGLEVLNGLIDNMLLGMEAGRLGLQVPDAALAKKI 120

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
                     A   + +            Q+  +      + +   + +      ++ A 
Sbjct: 121 ESIPAFQEKGAFSKNLYQKLLAANGMTPAQFEDMLRESMRLEQLQVVPQVIATASKVEAT 180

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
           +    +   R+     +  S      +           A   + RLP  
Sbjct: 181 RIWAWSQEYRDVSTVDIRDSDFAAAARPTATQVADYYHAHMDQFRLPAQ 229



 Score = 41.2 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 3/59 (5%)

Query: 261 YVTQKGVEYIAICDKRD---LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             T  G +  A+              + A + A     +       Y+K LR +A +  
Sbjct: 454 VKTSSGYQIFAVTRVTAPAAAAINPKVTAQIRASLEEQRGRLLSTAYLKDLREHARVKI 512


>gi|148653021|ref|YP_001280114.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp.
           PRwf-1]
 gi|148572105|gb|ABQ94164.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp.
           PRwf-1]
          Length = 92

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 7/77 (9%), Positives = 21/77 (27%), Gaps = 4/77 (5%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           ++  ++      +        +K ++       G      +  + P F  +         
Sbjct: 15  KELAEEIIAKLNKGAHFDVLAKKHSTCPSGKKGGDLGEFRKGQMVPAFDKV--CFNGELL 72

Query: 259 NP--YVTQKGVEYIAIC 273
            P    T+ G   + + 
Sbjct: 73  TPHLVKTKFGWHVVKVL 89


>gi|324513446|gb|ADY45525.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Ascaris
           suum]
          Length = 125

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             Q +  +A E      K       ++      S G   ++    +   FQ+       +
Sbjct: 40  EKQSKALEAMEKLKSGMKFNEVAANYSED-KARSGGDLGWMTRGSMVGAFQDAAFALPTS 98

Query: 257 TTN-------PYVTQKGVEYIAICDKR 276
           T +       P  TQ G   I +  K+
Sbjct: 99  TVDKPVYTDPPVKTQFGYHIIMVEGKK 125


>gi|258622473|ref|ZP_05717495.1| peptidyl-prolyl cis-trans isomerase C [Vibrio mimicus VM573]
 gi|258625154|ref|ZP_05720070.1| peptidyl-prolyl cis-trans isomerase C [Vibrio mimicus VM603]
 gi|261212993|ref|ZP_05927277.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio sp. RC341]
 gi|262164493|ref|ZP_06032231.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio mimicus VM223]
 gi|262173338|ref|ZP_06041015.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio mimicus MB-451]
 gi|258582529|gb|EEW07362.1| peptidyl-prolyl cis-trans isomerase C [Vibrio mimicus VM603]
 gi|258585173|gb|EEW09900.1| peptidyl-prolyl cis-trans isomerase C [Vibrio mimicus VM573]
 gi|260838058|gb|EEX64735.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio sp. RC341]
 gi|261890696|gb|EEY36683.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio mimicus MB-451]
 gi|262026873|gb|EEY45540.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio mimicus VM223]
          Length = 92

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 22/77 (28%), Gaps = 4/77 (5%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +++  D      +  K     +K++        G      +  + P F       Q    
Sbjct: 15  KEQADDILAQLKKGAKFHVLAKKYSLCPSGKKGGDLGEFRQGQMVPAFDKA--CFQGEVL 72

Query: 259 NP--YVTQKGVEYIAIC 273
            P    T+ G   + + 
Sbjct: 73  TPQLVKTKFGWHVVKVL 89


>gi|329925505|ref|ZP_08280379.1| PPIC-type PPIASE domain protein [Paenibacillus sp. HGF5]
 gi|328939788|gb|EGG36128.1| PPIC-type PPIASE domain protein [Paenibacillus sp. HGF5]
          Length = 311

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/295 (9%), Positives = 79/295 (26%), Gaps = 30/295 (10%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKK 87
               +   W   S+   +I    IT+ +    +             +  +  ++      
Sbjct: 32  FSQEASPPWKAGSQPVASIQDRAITEDEWVDELK--------KRYGREMLMTMLNRHAVA 83

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
            E +  GI   +  V       +R+ G        FL +        +  L  ++ +  +
Sbjct: 84  LEAKAKGIDVTAAEVETEIEVMSRSYG----SKERFLSEMEDQLGITESELKTETTYRLL 139

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           ++          E +I +  ++  +    +  +   +  +       +           +
Sbjct: 140 LEKIATSDVHIEEQQIDSYLEQYPDQFRPKKQLNLSMIEVASEDEAERVM---------D 190

Query: 208 SRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDL---HPQFQNLLKKSQNNTTNPYVT 263
                    +   + +  +      G+   + E D        +  L     +   P   
Sbjct: 191 RLENGEDFADLAAQVSLDEYTREDGGQIGLVEEDDPFLPPELLEAALSLEPGDIAGPVSL 250

Query: 264 QKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN--AII 314
                 + + D  +     E +++  +  Q    +         ++LR    A I
Sbjct: 251 TDTYAIVYVKDIIEPQAPSEESIRKAVRKQLALEQSVSLSE-LERQLREKYEARI 304


>gi|255533907|ref|YP_003094279.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter heparinus
           DSM 2366]
 gi|255346891|gb|ACU06217.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter heparinus
           DSM 2366]
          Length = 698

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/121 (12%), Positives = 40/121 (33%), Gaps = 6/121 (4%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN 255
              +K     +             ++++        G+        + P F++     + 
Sbjct: 362 DKAKKLADSLKTLVQNGASFAALAKQYSIDGSKDKGGELGTFSRGQMVPVFEDAAFNGKA 421

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN--TPTKIEKHEAE---YVKKLRS 310
                  +Q GV  I I +K+    ++A  AY+      +    +    +   ++ +++S
Sbjct: 422 GDLKVVTSQFGVHLIKI-EKQIGSSKVAKLAYIEKGLASSNKTRDAAYKKASAFLNEVKS 480

Query: 311 N 311
           N
Sbjct: 481 N 481



 Score = 35.8 bits (80), Expect = 8.3,   Method: Composition-based stats.
 Identities = 21/255 (8%), Positives = 58/255 (22%), Gaps = 17/255 (6%)

Query: 60  IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
           +      +         +  L  +  K  ++EK      +        +   N   ++  
Sbjct: 130 VQYFGNPQTGEVNRAEVLASLKQQD-KNPQLEKQWELLQNEIEKQALQKKYANLISNSIY 188

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
            ++        + +         +    V           E +      + K        
Sbjct: 189 VTTLEANDDYQNRNKLASFKYTLLDYAAV---PDATVKPTESDYSDYYNENKKRFENPSE 245

Query: 180 IRTVLFS-IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK----IHDVSIGKA 234
            R+  +     +  +      K   D   +  R   + +      S        +S GK 
Sbjct: 246 TRSFEYVAFSVSPTKEDSAAVKTQVDKLAADFRTAANDSLFAAVNSDVKVPYAYMSKGKL 305

Query: 235 QYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP 294
                         +      +   P  +    + I + D R    +    +++    + 
Sbjct: 306 D-------PAVDSVVFNLPAGSYYGPRFSGNSYKLIKVIDTR-FSPDSVKASHILLDPSK 357

Query: 295 TKIEKHEAEYVKKLR 309
                   +    L+
Sbjct: 358 MGGADKAKKLADSLK 372


>gi|163755251|ref|ZP_02162371.1| possible peptidyl-prolyl cis-trans isomerase [Kordia algicida OT-1]
 gi|161324671|gb|EDP96000.1| possible peptidyl-prolyl cis-trans isomerase [Kordia algicida OT-1]
          Length = 660

 Score = 58.1 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/306 (12%), Positives = 79/306 (25%), Gaps = 46/306 (15%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +     L +  +V   ++   +   ++  TI GE     + S+            + ++ 
Sbjct: 1   MKNSIQLFLILLVSFTTF-GQSKKDKVLFTIEGEPTYVSEFSRVYKKNLDIIDEKDQKE- 58

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
                I E        K                         E  S   +  G      +
Sbjct: 59  -----IEEYFDLFVEYK-------------LKLKEAKNLKLDEKDSYVKELAGYRKQLSR 100

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
            Y+   +    + K  +                    +         ++    D   ++ 
Sbjct: 101 NYMTDNNATEKLTKEAYDR------------------LQKEVKASHILINVSLDAAPKDT 142

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV-------SIGKAQYLLESDLHPQFQN 248
                +I D  +S L          K +             + G   Y     +   F++
Sbjct: 143 LAAYNKIMDIRKSILEGADFGEMAVKHSDDPSAKGNQKVAANKGNLGYFSAFRMVYPFES 202

Query: 249 -LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
                 +   + P  TQ G   + + D RD  GEI +   L       + ++   + +K 
Sbjct: 203 AAFNTQKGEVSMPVRTQFGYHIVKVEDIRDNAGEITVAHILLLDKKEGENKEDPEQKIKD 262

Query: 308 LRSNAI 313
           + S   
Sbjct: 263 IYSQIQ 268



 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 41/138 (29%), Gaps = 5/138 (3%)

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESD 241
            +  +   + +N+   +++IKD               ++F+      V+ G         
Sbjct: 241 HILLLDKKEGENKEDPEQKIKDIYSQIQDGGDFGALAKRFSEDRSSGVNKGILPKFGRGR 300

Query: 242 LHPQFQNLLKK---SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE 298
           L  +    +          + P+ ++ G   + +  K  +      K  L  +    K  
Sbjct: 301 LRSKIFEDVAFSLDKAKEISKPFKSEFGWHIVQLISKHPMKSYEEEKPLLERKIKNDKRA 360

Query: 299 KHEA-EYVKKLRSNAIIH 315
                  +KK+     I 
Sbjct: 361 NVINTSILKKINQLYKIE 378


>gi|302783795|ref|XP_002973670.1| hypothetical protein SELMODRAFT_99510 [Selaginella moellendorffii]
 gi|300158708|gb|EFJ25330.1| hypothetical protein SELMODRAFT_99510 [Selaginella moellendorffii]
          Length = 253

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/119 (10%), Positives = 42/119 (35%), Gaps = 2/119 (1%)

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS 253
            +  +Q   +  +          +   + +      + G   ++ +  + P+F+     +
Sbjct: 55  KEDQLQLLTELQKRLVQEDIDLSDLATEHSICPSKKNGGMLGWVSKGRMVPEFEEAAFSA 114

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALK-AYLSAQNTPTKIEKHEAEY-VKKLRS 310
             N      T+ G   + +  +R  G  + ++   L+ +    +  ++     V++L+ 
Sbjct: 115 PLNKIVRAKTKFGWHLLQVLSERFSGFLVEIQPEELAKRMKDPEFRENAQLLDVRELKE 173


>gi|229366844|gb|ACQ58402.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Anoplopoma
           fimbria]
          Length = 127

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------LLKKS 253
           +  +A E      +      +++        G   ++    +   FQ+            
Sbjct: 46  KCMEAMEKLKAGVRFSEVASQYSED-KARQGGDLGWMTRGSMVGPFQDAAFALPISSMDK 104

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
              T  P  T+ G   I +  K+
Sbjct: 105 PVYTDPPVKTKFGYHIIMVEGKK 127


>gi|326492403|dbj|BAK01985.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326502962|dbj|BAJ99109.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 302

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/92 (11%), Positives = 30/92 (32%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN 255
               + + D E+S        +   + +      + G   ++    + P+F+     +  
Sbjct: 106 EKDARLLVDLEKSIASGADLSDLAVEHSLCPSKENGGMLGWVRRGQMVPEFEEAAFSAPL 165

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALKAY 287
           N      T+ G   + +  +RD      ++  
Sbjct: 166 NKVVRCKTKFGWHLVQVLSERDQCLLQDIQPE 197


>gi|109947398|ref|YP_664626.1| hypothetical protein Hac_0844 [Helicobacter acinonychis str.
           Sheeba]
 gi|109714619|emb|CAJ99627.1| conserved hypothetical protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 404

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/298 (12%), Positives = 90/298 (30%), Gaps = 37/298 (12%)

Query: 25  FCIVPIVSYKSWAMSSRIR----TTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
                  +  +  +  ++       +NG  IT   I +       Q+     +  A   L
Sbjct: 131 AIFGNSNNSSNKTLEDKVVGGISLLVNGSPITLYQIQEE------QEKFKVSKNQARDRL 184

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I + +K QEIE+  I  D + ++      A+  G+  + F   +  +      ++  L  
Sbjct: 185 IADRIKNQEIERLKIHIDDDRLDQEMAMMAQQQGMDLDHFKQMIMAE-GHYKTYRDQLKE 243

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
                ++++N  +                         +    +         +Q  +++
Sbjct: 244 HLEMQELLRNILLTNVDTSSETKMREYYNKHKEQFSIPMEVETVRY----SSTSQEDLER 299

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP 260
            + D       + K                      +    L+PQ   +    + ++  P
Sbjct: 300 AMSDPNLEVPGVNKANET------------------IEMKTLNPQIAQVFISHEKDSFTP 341

Query: 261 YVTQKG----VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            +   G      YI     ++       K +++ +      +K   E+ +KLR  + I
Sbjct: 342 IMNGGGGQFITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEKLRVKSRI 399


>gi|317504768|ref|ZP_07962727.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315664099|gb|EFV03807.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 470

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 77/289 (26%), Gaps = 36/289 (12%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           I   ++   S         +  TING+ +            K Q  NG   K        
Sbjct: 2   ISLAMLLCGSMAFGQTDDPVLMTINGKPVKRSAFEFAYK--KYQTANGFERKSVGD---- 55

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
                                  + +   N  L  E+  S                  Q 
Sbjct: 56  -----------------------YAEQYANDKLKVEEALSQRLDTLPSFLQLFAAYRNQQ 92

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL-FSIPDNKLQNQGFVQKR 201
           I   +       +       + A  Q+  + +     +R +L         Q +  V++R
Sbjct: 93  IPQTLDN---DAETEVEARRLYAFTQQRVDASGGMIKVREILLRLGQRASKQTEIEVKQR 149

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGK-AQYLLESD-LHPQFQNLLKKSQNNTTN 259
           I     +            +++      ++G+   +LL    L           +   + 
Sbjct: 150 IDSIYNALQHGADFGEMARRYSDNKTATNLGEHQPWLLPGQTLPEFETQAYALKKGEMST 209

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT-KIEKHEAEYVKK 307
           P++T  G   I I DK       +++  L    +      K  A  +++
Sbjct: 210 PFLTPAGYHIILIEDKSAYFPYDSVRNDLLRFVSQRNLRNKLTAARLQE 258


>gi|298480173|ref|ZP_06998371.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D22]
 gi|298273454|gb|EFI15017.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D22]
          Length = 515

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/290 (5%), Positives = 69/290 (23%), Gaps = 38/290 (13%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           ++   + +     +A    +   +NG  +   +          +                
Sbjct: 6   LLLGCISLFVVAVFAQEDPVLMRVNGREVLRSEFENAYRRYAERSNAQ------------ 53

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
                                  +      + L  E   +             +    + 
Sbjct: 54  ------------------LSPKEYAALFVQSKLKVEAARAAGLDTTTVFRKQHEKRRTEL 95

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           +   ++    M     +  +    K +   + V +   R        +  + +  +    
Sbjct: 96  VESYLIDKQVMDSCARVLYQKMGLKARSGRVQVMQIFKRLPQTVTFRHLEEEKVRMDSIY 155

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYV 262
           +  +           ++     +   +                       ++   + P+ 
Sbjct: 156 RVIQNQPDLNFNRLVEIYSDDKQSRWIEG-------LETTSEFEDVAFSLAKGAVSQPFF 208

Query: 263 TQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK-IEKHEAEYVKKLRSN 311
           T +G+  + + D+ +      +   L  +    + ++K  A  + +L+ +
Sbjct: 209 TPEGIHILKVIDREEAFAYENVSGRLIERLRRKEILDKGTAAMLDRLKRS 258


>gi|302783100|ref|XP_002973323.1| hypothetical protein SELMODRAFT_232038 [Selaginella moellendorffii]
 gi|302789630|ref|XP_002976583.1| hypothetical protein SELMODRAFT_105619 [Selaginella moellendorffii]
 gi|300155621|gb|EFJ22252.1| hypothetical protein SELMODRAFT_105619 [Selaginella moellendorffii]
 gi|300159076|gb|EFJ25697.1| hypothetical protein SELMODRAFT_232038 [Selaginella moellendorffii]
          Length = 123

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 8/76 (10%), Positives = 17/76 (22%), Gaps = 1/76 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             V K     +E      K  +   + +        G   +     +   F+        
Sbjct: 44  QAVAKLEHIRDEILSGRAKFSDLATQLSDCSSAKRGGDLGWFGRGQMQKSFEEATYSLKV 103

Query: 255 NNTTNPYVTQKGVEYI 270
              +    +  G   I
Sbjct: 104 GELSGIVDSDSGAHII 119


>gi|224098208|ref|XP_002194667.1| PREDICTED: putative peptidyl-prolyl cis-trans isomerase
           NIMA-interacting 4 variant 1 [Taeniopygia guttata]
          Length = 137

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 23/83 (27%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------LLKKS 253
           R  +A E      +      +++        G   ++    +   FQ             
Sbjct: 56  RAMEAMEKLKSGQRFSEVAAQYSED-KARQGGDLGWMTRGSMVGPFQEAAFALPVSSMDK 114

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
              T  P  T+ G   I +  ++
Sbjct: 115 PVYTDPPVKTKFGYHIIMVEGRK 137


>gi|254782280|sp|B5KFL3|PIN4_TAEGU RecName: Full=Peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4; AltName: Full=Parvulin-14; Short=Par14; AltName:
           Full=Peptidyl-prolyl cis-trans isomerase Pin4;
           Short=PPIase Pin4; AltName: Full=Rotamase Pin4
 gi|197129863|gb|ACH46361.1| putative peptidyl-prolyl cis-trans isomerase NIMA-interacting 4
           variant 1 [Taeniopygia guttata]
          Length = 128

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 23/83 (27%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------LLKKS 253
           R  +A E      +      +++        G   ++    +   FQ             
Sbjct: 47  RAMEAMEKLKSGQRFSEVAAQYSED-KARQGGDLGWMTRGSMVGPFQEAAFALPVSSMDK 105

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
              T  P  T+ G   I +  ++
Sbjct: 106 PVYTDPPVKTKFGYHIIMVEGRK 128


>gi|190347260|gb|EDK39502.2| hypothetical protein PGUG_03600 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 175

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/162 (8%), Positives = 38/162 (23%), Gaps = 5/162 (3%)

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
             T       +    +             + +      +  F       + +I  +   +
Sbjct: 15  SRTHNKEYFLNQATRESSWEPPFGTDKSKLDAYISQYKERGFKP-VVPSDGKIRTSHFLV 73

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS 230
           K+   R          I   + +     +K     ++      K     E  +       
Sbjct: 74  KHKDSRRPRSWKSPDGISLTRDEAIAIAKK---YRQQIVNGDKKLSELAEHESDCSSHSQ 130

Query: 231 IGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIA 271
            G   +  +  + P F+           ++   +  G+  I 
Sbjct: 131 GGDLGFFGKGQMQPSFEEAAFGLHVGEISDLVESDSGIHIIQ 172


>gi|326795759|ref|YP_004313579.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas
           mediterranea MMB-1]
 gi|326546523|gb|ADZ91743.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas
           mediterranea MMB-1]
          Length = 92

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 10/78 (12%), Positives = 21/78 (26%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +   +  +E   +        +K +        G      + ++   F +   K    
Sbjct: 12  KSKAEAEQLKERLDKGEDFHKLAKKHSLCPSGKRGGDLGEFRKGEMVSAFDRAAFKGPLL 71

Query: 256 NTTNPYVTQKGVEYIAIC 273
               P  TQ G   I + 
Sbjct: 72  AVQGPVKTQFGFHLIKVL 89


>gi|293369502|ref|ZP_06616081.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
 gi|292635387|gb|EFF53900.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
          Length = 515

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/290 (6%), Positives = 71/290 (24%), Gaps = 40/290 (13%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           ++   + +     +A    +   +NG  I   +                           
Sbjct: 6   LLLGCISLFVVAVFAQEDPVLMRVNGREILRSEFE------------------------- 40

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
                    +     ++   +  +      + L  E   +            ++    + 
Sbjct: 41  -----YAYRRYAERSNARLSSKEYAALFAQSKLKVEAARAAGLDTTSAFRKQQEKCRTEL 95

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           +   ++                  ++           +  +   +P          +K  
Sbjct: 96  VESYLLDRQV-----MDSCARAIYQKMGLKARSGRVQVMQIFKRLPQTITSRHLEEEKTR 150

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL-ESDLHPQFQNLLKKSQNNTTNPY 261
            D+    ++   D N          D       ++                ++   + P+
Sbjct: 151 MDSIYQAIQNQPDLNFNRLVEIYSDDKQSR---WIECLETTSEFENVAFSLAKGMASQPF 207

Query: 262 VTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK-IEKHEAEYVKKLRS 310
            T +G+  + + D+ +      + A L  +    + ++K     +++L+ 
Sbjct: 208 FTPEGIHILKVMDREETAAYENVSARLMERLRRKEILDKGTGAVLERLKK 257


>gi|167765434|ref|ZP_02437547.1| hypothetical protein BACSTE_03824 [Bacteroides stercoris ATCC
           43183]
 gi|167697062|gb|EDS13641.1| hypothetical protein BACSTE_03824 [Bacteroides stercoris ATCC
           43183]
          Length = 518

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/264 (7%), Positives = 68/264 (25%), Gaps = 37/264 (14%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVE 83
           +  I   VS+ +++    +   +NG+ +   +                            
Sbjct: 8   LVMIFSGVSWFAFSQQDPVLMRVNGKDVLRSEFEYYYNKDAAS----------------- 50

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
                              + +          +         +    D        +++ 
Sbjct: 51  -----------------FASGYVAPEKYAERFADFKLKVSAAETAGLDTALSFREKVENY 93

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
              ++K+                 +           +  +   +P N   +         
Sbjct: 94  RNRLIKSYLTDTAVIENEARRLYDKMKAGHHAGRVRVSHIFKYLPQNVSGHALRKAVAGM 153

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYV 262
           D+    LR  +     +    +  D    +  ++    +  +F+N+  + S    + P+ 
Sbjct: 154 DSIYEYLRRNQTPEAFDACVKRFSDEK--QPFWVSWLQMPVEFENVAFELSAGEVSQPFF 211

Query: 263 TQKGVEYIAICDKRDLGGEIALKA 286
           T +G+  + + ++ ++     +K 
Sbjct: 212 TPQGIHIVKVIERMEMPSFDDVKN 235



 Score = 37.0 bits (83), Expect = 4.1,   Method: Composition-based stats.
 Identities = 23/266 (8%), Positives = 75/266 (28%), Gaps = 21/266 (7%)

Query: 56  ISKRIALLKLQKINGELEK--IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
           + K       +    EL +     + L     K            +          A   
Sbjct: 258 LKKEYGYAPDKTGMDELIRTGQTKRTLFTLAGKSYTGNDFICFAVAYPAGIRRQLDAFVM 317

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
               +  +  L+++     +  +    + +   +   +   +  + E  +    +K ++ 
Sbjct: 318 KTVLDYENVCLERKYPELRYQVEEYRNRLLLDKITGQEIQKRIESDEAGLQTYFEKHRSD 377

Query: 174 TV---REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS 230
                + Y    +         Q + F++   ++  +  +RL  +     +  ++    +
Sbjct: 378 YQWREQRYKGIVLHGVSKRIVKQARKFLKSLPEEEWKDAIRLTFNAGAQPQIQAEQGTFA 437

Query: 231 IGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA 290
            G       +          K +    + P+         A+  K+    +      +  
Sbjct: 438 SGD------NVYVDDLVFKGKDAAPMVSFPFT--------AVLGKKVKAPDD--YREVKD 481

Query: 291 QNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +         E +++ +LR++A +  
Sbjct: 482 RVVTDYRNCLEKQWITRLRTSAKVEI 507


>gi|197119010|ref|YP_002139437.1| PpiC-type peptidylprolyl cis-trans isomerase [Geobacter
           bemidjiensis Bem]
 gi|197088370|gb|ACH39641.1| peptidylprolyl cis-trans isomerase, PpiC-type [Geobacter
           bemidjiensis Bem]
          Length = 93

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 8/80 (10%), Positives = 20/80 (25%), Gaps = 1/80 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             ++     +          +   + +        G+        +  +F + +      
Sbjct: 12  ATEQECVALKTKIESGADFGDCARESSLCPSGNQGGRLGEFRPGQMVREFDEVVFSGEVG 71

Query: 256 NTTNPYVTQKGVEYIAICDK 275
               P  TQ G   I I  +
Sbjct: 72  KVLGPVKTQFGYHLIEIMSR 91


>gi|99035882|ref|ZP_01314934.1| hypothetical protein Wendoof_01000229 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 413

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 82/245 (33%), Gaps = 22/245 (8%)

Query: 37  AMSSRIRTTINGEVITDGDISKRIALLK-----LQKINGELEKIAVQELIVETLKKQEIE 91
           A    I   +NGE I++ DI KRI  +            E +   ++ELI E +   E +
Sbjct: 50  ATEIEIVADVNGEPISNLDIEKRINFINSLFGTQSVNQKEAKPQVLRELIDEIIIINEAQ 109

Query: 92  KSGITFDSNTVNYFFVQHARN-TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
           +  I   +  ++   +        L A +   +++K  I     ++ +  Q +W  +++ 
Sbjct: 110 RLNIKLSNEELDNAIMLFLTQSFKLKANEVDQYIEKHNIDLGILRKQIKCQLLWSKIIEV 169

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
             +      + E+   K++ +           ++    D  +        +     ++  
Sbjct: 170 RIVPFINISDKEVDDVKRQTEKPDYLITFQEFIIPDQKDKDVYGIAEDLVKKLRNSDNPE 229

Query: 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYI 270
              K        +        GK + +LE               ++   P+   +G   I
Sbjct: 230 SPIKMRKATVNLSQL-----KGKLKSVLEG-----------LETSDIAGPFSFSEGYSVI 273

Query: 271 AICDK 275
            + DK
Sbjct: 274 KVIDK 278


>gi|311276483|ref|XP_003135228.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4-like [Sus scrofa]
          Length = 131

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT-- 258
           +I +A E      K      +++        G   ++    +   FQ        +    
Sbjct: 50  KILEAMEKLKSGMKFNEVAAQYSED-KARQGGDLGWMTRGSMVGPFQEAAFALPISVLDK 108

Query: 259 -----NPYVTQKGVEYIAICDKR 276
                 P  T+ G   I +  ++
Sbjct: 109 PVFTDPPVKTKFGYHIIMVEGRK 131


>gi|149277612|ref|ZP_01883753.1| peptidylprolyl cis-trans isomerase [Pedobacter sp. BAL39]
 gi|149231845|gb|EDM37223.1| peptidylprolyl cis-trans isomerase [Pedobacter sp. BAL39]
          Length = 695

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/121 (10%), Positives = 36/121 (29%), Gaps = 6/121 (4%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN 255
               K     +              +++        G+        +  +F+N     + 
Sbjct: 359 DKATKLADSLKTLVQNGANFATLAAQYSVDGSKDKGGELGTFSRGQMVAEFENAAFNGKA 418

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN--TPTKIEKHEAE---YVKKLRS 310
                  +Q GV  I I +K+    ++   AY+      +    +    +   ++ +++ 
Sbjct: 419 GDLKVVTSQFGVHLIKI-EKQVGSSKVVKLAYIEKSLAPSNKTKDAAYKKASNFLAEVKD 477

Query: 311 N 311
           N
Sbjct: 478 N 478


>gi|56708512|ref|YP_170408.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89256686|ref|YP_514048.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           holarctica LVS]
 gi|110670983|ref|YP_667540.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115315096|ref|YP_763819.1| peptidylprolyl isomerase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|118497285|ref|YP_898335.1| parvulin-like peptidyl-prolyl isomerase domain-containing protein
           [Francisella tularensis subsp. novicida U112]
 gi|134301685|ref|YP_001121653.1| peptidyl-prolyl cis-trans isomerase C [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|156502846|ref|YP_001428911.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|167010492|ref|ZP_02275423.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           holarctica FSC200]
 gi|187931510|ref|YP_001891494.1| parvulin-like peptidyl-prolyl isomerase domain [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|194323588|ref|ZP_03057365.1| ppic-type ppiase domain protein, putative [Francisella tularensis
           subsp. novicida FTE]
 gi|208779078|ref|ZP_03246424.1| ppic-type ppiase domain protein, putative [Francisella novicida
           FTG]
 gi|224457677|ref|ZP_03666150.1| parvulin-like peptidyl-prolyl isomerase domain [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254369547|ref|ZP_04985558.1| hypothetical protein FTAG_01432 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|254371139|ref|ZP_04987141.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875361|ref|ZP_05248071.1| peptidyl-prolyl cis-trans isomerase C [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|290954279|ref|ZP_06558900.1| peptidyl-prolyl cis-trans isomerase C [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295312306|ref|ZP_06803095.1| peptidyl-prolyl cis-trans isomerase C [Francisella tularensis
           subsp. holarctica URFT1]
 gi|11228666|gb|AAG33118.1|AF240631_1 putative peptidyl-prolyl cis-trans isomerase [Francisella
           tularensis subsp. tularensis]
 gi|11228669|gb|AAG33119.1|AF247642_1 putative peptidylprolyl isomerase [Francisella tularensis subsp.
           holarctica]
 gi|11228672|gb|AAG33120.1|AF247685_1 putative parvulin [Francisella tularensis subsp. mediasiatica]
 gi|11228676|gb|AAG33122.1|AF247687_1 putative parvulin [Francisella tularensis subsp. holarctica]
 gi|11228678|gb|AAG33123.1|AF247688_1 putative parvulin [Francisella novicida]
 gi|11228680|gb|AAG33124.1|AF247689_1 putative parvulin [Francisella tularensis subsp. tularensis]
 gi|11228682|gb|AAG33125.1|AF247690_1 putative parvulin [Francisella tularensis subsp. holarctica]
 gi|21952446|gb|AAM82565.1|AF524865_1 peptidyl-prolyl trans isomerase [Francisella tularensis subsp.
           tularensis]
 gi|56605004|emb|CAG46105.1| Peptidyl-prolyl cis-trans isomerase. [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89144517|emb|CAJ79832.1| Peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           holarctica LVS]
 gi|110321316|emb|CAL09488.1| Peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115129995|gb|ABI83182.1| peptidylprolyl isomerase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|118423191|gb|ABK89581.1| parvulin-like peptidyl-prolyl isomerase domain [Francisella
           novicida U112]
 gi|134049462|gb|ABO46533.1| peptidyl-prolyl cis-trans isomerase C [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|151569379|gb|EDN35033.1| hypothetical protein FTBG_00899 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|156253449|gb|ABU61955.1| peptidyl-prolyl cis-trans isomerase domain protein [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|157122501|gb|EDO66636.1| hypothetical protein FTAG_01432 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|187712419|gb|ACD30716.1| parvulin-like peptidyl-prolyl isomerase domain [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|194322443|gb|EDX19924.1| ppic-type ppiase domain protein, putative [Francisella tularensis
           subsp. novicida FTE]
 gi|208744878|gb|EDZ91176.1| ppic-type ppiase domain protein, putative [Francisella novicida
           FTG]
 gi|254841360|gb|EET19796.1| peptidyl-prolyl cis-trans isomerase C [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282159725|gb|ADA79116.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           tularensis NE061598]
 gi|328676774|gb|AEB27644.1| Peptidyl-prolyl cis-trans isomerase ppiC [Francisella cf. novicida
           Fx1]
          Length = 92

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 9/81 (11%), Positives = 22/81 (27%), Gaps = 2/81 (2%)

Query: 197 FVQKRIKDAEESRLRLP-KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQ 254
             +   +  ++              K +        G      +  + P+F + +     
Sbjct: 11  QSESECQQIKKDITEGKITFEEAARKHSLCPSGARGGDLGTFSQGQMVPEFDRVVFNDEL 70

Query: 255 NNTTNPYVTQKGVEYIAICDK 275
           +    P  TQ G   + I  +
Sbjct: 71  HKVHGPVQTQFGYHLLEITSR 91


>gi|315304396|ref|ZP_07874697.1| peptidylprolyl isomerase PrsA1 [Listeria ivanovii FSL F6-596]
 gi|313627234|gb|EFR96066.1| peptidylprolyl isomerase PrsA1 [Listeria ivanovii FSL F6-596]
          Length = 245

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/211 (8%), Positives = 58/211 (27%), Gaps = 4/211 (1%)

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
             +  G   +     ++ +               +    +  +         + +    +
Sbjct: 8   FEKILGDKYKVTDEQVNSEFKKYKSQYGDQFDAVLAQSGLTEETFKSQLKYNLLVQKATE 67

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IH 227
              + + +        +             + + K+ E+      K  +  +++++    
Sbjct: 68  ANTDTSDKALKEYYKTWQPDITVSHILVADEAKAKEVEQKLKDGAKFADLAKEYSTDTAT 127

Query: 228 DVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK 285
             + G+        + P F+      K++ + + P  TQ G   I +            K
Sbjct: 128 KDNGGELAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMDKPATKTTYDKDK 187

Query: 286 AYLSA-QNTPTKIEKHEAEYVKKLRSNAIIH 315
             +           ++  + +KK   +A + 
Sbjct: 188 KAVKESYLQSQLTTENMQKTLKKEYKDANVK 218


>gi|261403937|ref|YP_003240178.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           Y412MC10]
 gi|261280400|gb|ACX62371.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           Y412MC10]
          Length = 311

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/295 (9%), Positives = 79/295 (26%), Gaps = 30/295 (10%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKK 87
               +   W   S+   +I    IT+ +    +             +  +  ++      
Sbjct: 32  FSQEASPPWKTGSQPVASIQDRAITEDEWVDELK--------KRYGREMLMTMLNRHAVA 83

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
            E +  GI   +  V       +R+ G        FL +        +  L  ++ +  +
Sbjct: 84  LEAKAKGIDVTTAEVETEIEVMSRSYG----SKERFLSEMEDQLGITESELKTETTYRLL 139

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           ++          E +I +  ++  +    +  +   +  +       +           +
Sbjct: 140 LEKIATSDVHIEEQQIDSYLEQYPDQFRPKKQLNLSMIEVASEDEAERVM---------D 190

Query: 208 SRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDL---HPQFQNLLKKSQNNTTNPYVT 263
                    +   + +  +      G+   + E D        +  L     +   P   
Sbjct: 191 RLENGEDFADLAAQVSLDEYTREDGGQIGLVEEDDPFLPPELLEAALSLEPGDIAGPISL 250

Query: 264 QKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN--AII 314
                 + + D  +     E +++  +  Q    +         ++LR    A I
Sbjct: 251 TDTYAIVYVRDIIEPQAPSEESIRKAVRKQLALEQSVSLTELE-RQLREKYEARI 304


>gi|325981959|ref|YP_004294361.1| peptidyl-prolyl cis-trans isomerase, EpsD family [Nitrosomonas sp.
           AL212]
 gi|325531478|gb|ADZ26199.1| peptidyl-prolyl cis-trans isomerase, EpsD family [Nitrosomonas sp.
           AL212]
          Length = 322

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/308 (12%), Positives = 89/308 (28%), Gaps = 43/308 (13%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN- 69
             I ++   F+ ++          +      I  ++NG  IT   ++  I    ++    
Sbjct: 7   RMISIIGLVFITVLTLTACDKESNTKKSGQSIV-SVNGSEITMLQLNDEIRRSNIRADQY 65

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
               +  ++ LI   L   E  ++ +      +      +A                   
Sbjct: 66  ESAREQLLESLIARQLIVDEAIRNKLDRTPEVMQARERANA------------------- 106

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                      Q I    ++          + EI    QK   +  +    +    +   
Sbjct: 107 -----------QVIAQAYLQGIISKIEKPSKAEIEDYFQKNPELFAQR---KQFDLTTVR 152

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
               +     KR+ DA +S   +    +K +                   +DL  Q   +
Sbjct: 153 IATSDVSEELKRVIDAAKSIEEVVTWLDKNKIQY-------FRTLATRSSADLPLQLVLM 205

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA-YLSAQNTPTKIEKHEAEYVKKL 308
           L++   +T      Q+    I++   ++        A  +       K ++     + +L
Sbjct: 206 LREKSKDTIYIINEQEKSILISVNAIKNNSVSETAAAPQIERFLINQKYKEATDAEITRL 265

Query: 309 RSNAIIHY 316
           R++A I Y
Sbjct: 266 RTSAKIEY 273


>gi|120600309|ref|YP_964883.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           W3-18-1]
 gi|126172833|ref|YP_001048982.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS155]
 gi|146291762|ref|YP_001182186.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           putrefaciens CN-32]
 gi|153002247|ref|YP_001367928.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS185]
 gi|160876971|ref|YP_001556287.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS195]
 gi|217974834|ref|YP_002359585.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS223]
 gi|120560402|gb|ABM26329.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           W3-18-1]
 gi|125996038|gb|ABN60113.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS155]
 gi|145563452|gb|ABP74387.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           putrefaciens CN-32]
 gi|151366865|gb|ABS09865.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS185]
 gi|160862493|gb|ABX51027.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS195]
 gi|217499969|gb|ACK48162.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS223]
 gi|315269174|gb|ADT96027.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS678]
 gi|319424998|gb|ADV53072.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           putrefaciens 200]
          Length = 92

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 9/75 (12%), Positives = 25/75 (33%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +++ +D  +            ++F+S       G      +  + PQF  +    +    
Sbjct: 15  KEQAEDIVKQLNNGANFAVLAKRFSSCPSAKKGGDLGEFKKGQMVPQFDKVAFSGELLVP 74

Query: 259 NPYVTQKGVEYIAIC 273
           +   T+ G   + + 
Sbjct: 75  HIVKTKFGWHVVKVL 89


>gi|302787911|ref|XP_002975725.1| hypothetical protein SELMODRAFT_103417 [Selaginella moellendorffii]
 gi|300156726|gb|EFJ23354.1| hypothetical protein SELMODRAFT_103417 [Selaginella moellendorffii]
          Length = 253

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/180 (8%), Positives = 58/180 (32%), Gaps = 9/180 (5%)

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            + +   I+ I   V   +    +  +  +         +      ++   L    D   
Sbjct: 1   MWPRQQRIECIAAQVRFRENSATFIFIPRDSSLFPSPGTSGNQDREILVQHLLVKEDQLQ 60

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
                 ++ +++  +         +   + +      + G   ++ +  + P+F+     
Sbjct: 61  LLTELQKRLVQEDIDL-------SDLATEHSICPSKKNGGMLGWVSKGRMVPEFEEAAFS 113

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK-AYLSAQNTPTKIEKHEAEY-VKKLRS 310
           +  N      T+ G   + +  +R  G  + ++   L+ +    +  ++     V++L+ 
Sbjct: 114 APLNKIVRAKTKFGWHLLQVLSERFSGFLVEIQPEELAKRMKDPEFRENAQLLDVRELKE 173


>gi|54302531|ref|YP_132524.1| putative peptidyl-prolyl cis-trans isomerase C [Photobacterium
           profundum SS9]
 gi|46915953|emb|CAG22724.1| putative peptidyl-prolyl cis-trans isomerase C [Photobacterium
           profundum SS9]
          Length = 122

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 4/77 (5%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           Q++ +D  E   +  K     +K+++     S G      +  + PQF  +         
Sbjct: 45  QEKAEDIIEQLKKGAKFQTLAKKYSNCPSGKSGGDLGEFRKGQMVPQFDKV--CFTGELL 102

Query: 259 NP--YVTQKGVEYIAIC 273
            P    T+ G   + + 
Sbjct: 103 TPHLVKTKFGWHIVKVL 119


>gi|16800550|ref|NP_470818.1| hypothetical protein lin1482 [Listeria innocua Clip11262]
 gi|46396989|sp|Q92BR2|PRSA1_LISIN RecName: Full=Foldase protein prsA 1; Flags: Precursor
 gi|16413955|emb|CAC96713.1| lin1482 [Listeria innocua Clip11262]
          Length = 294

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/281 (9%), Positives = 78/281 (27%), Gaps = 39/281 (13%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS 99
           S      +   +T  ++ + +                VQ+L  + + + +   +    ++
Sbjct: 24  SSAVVKTDAGNVTQDELYEAMKT--------TYGNEVVQQLTFKKILEDKYTVTEKEVNA 75

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
                             E +    +     +N  K        +  +V+          
Sbjct: 76  EY------------KKYEEQYGDSFESTLSSNNLTKTSFKENLEYNLLVQKATEANMNVS 123

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
           E ++    +           +R +L              +   K+ +       K  +  
Sbjct: 124 ESKLKTYYKTW----EPNITVRHIL-----------VDDEATAKEIQTKLKNGEKFADLA 168

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKR 276
           +++++      + G        ++   F+      K++++ +    +  G   I +  K 
Sbjct: 169 KEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYALKNKDDVSGIVKSTYGYHLIQLVKKT 228

Query: 277 DLGGEIALKAYLS-AQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           + G     KA +  A        ++    +KK    A I  
Sbjct: 229 EKGTYAKEKANVKAAYIKSQLTSENMTAALKKELKAANIDI 269


>gi|313618921|gb|EFR90776.1| foldase protein PrsA [Listeria innocua FSL S4-378]
          Length = 294

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/281 (9%), Positives = 79/281 (28%), Gaps = 39/281 (13%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS 99
           S      +   +T  ++ + +                VQ+L  + + + +   +    ++
Sbjct: 24  SSAVVKTDAGNVTQDELYEAMKT--------TYGNEVVQQLTFKKILEDKYTVTEKEVNA 75

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
                             E +    +     +N  K        +  +V+          
Sbjct: 76  EY------------KKYEEQYGDSFESTLSSNNLTKTSFKENLEYNLLVQKATEANMNVS 123

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
           E ++    +        +  +R +L              +   K+ +       K  +  
Sbjct: 124 ESKLKTYYKTW----EPDITVRHIL-----------VDDEATAKEIQTKLKNGEKFADLA 168

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKR 276
           +++++      + G        ++   F+      K++++ +    +  G   I +  K 
Sbjct: 169 KEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYALKNKDDVSGIVKSTYGYHLIQLVKKT 228

Query: 277 DLGGEIALKAYLS-AQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           + G     KA +  A        ++    +KK    A I  
Sbjct: 229 EKGTYAKEKANVKAAYIKSQLTSENMTAALKKELKAANIDI 269


>gi|281500878|pdb|3KAD|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
           Inhibitors
 gi|281500879|pdb|3KAF|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
           Inhibitors
 gi|317455039|pdb|2XP6|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
           By Structure-Guided Fragment Evolution
          Length = 167

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 25/103 (24%), Gaps = 1/103 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +       R   +         +  ++      ++ +       +   +F+     
Sbjct: 61  CSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSA 120

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            + G         +   F++          + P  T  G+  I
Sbjct: 121 KARGDLGAFSRGQMAKPFEDASFALRTGEMSGPVFTDSGIHII 163


>gi|291615694|ref|YP_003518436.1| PpiC [Pantoea ananatis LMG 20103]
 gi|291150724|gb|ADD75308.1| PpiC [Pantoea ananatis LMG 20103]
 gi|327395959|dbj|BAK13381.1| peptidyl-prolyl cis-trans isomerase C PpiC [Pantoea ananatis
           AJ13355]
          Length = 93

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 8/76 (10%), Positives = 17/76 (22%), Gaps = 1/76 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
           + +     E   +         K +      + G         +   F + +        
Sbjct: 15  EAQAIALLEKLQKGENFQQLARKHSVCPSGRNGGDLGEFRRGKMVAAFDKAVFTCPLLQP 74

Query: 258 TNPYVTQKGVEYIAIC 273
             P  T  G   I + 
Sbjct: 75  FGPVKTAFGYHIIKVL 90


>gi|218961685|ref|YP_001741460.1| hypothetical protein; putative signal peptide [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730342|emb|CAO81254.1| hypothetical protein; putative signal peptide [Candidatus
           Cloacamonas acidaminovorans]
          Length = 679

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/315 (10%), Positives = 81/315 (25%), Gaps = 31/315 (9%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFC--IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIAL 62
           +F  L  ++ ++     + +    +   +S  +    S I    NG VIT  DI  +I+ 
Sbjct: 1   MFRHLHFYLGIVLMLVSIFLTAENVPVTLSKNNSNNDSDILAEYNGGVITRKDIELKISK 60

Query: 63  LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
           L  Q  +                           + +       +       +  +    
Sbjct: 61  LPPQYQS--------------------------RYKTVGGQMEVLNAIAAEEVFYQKARQ 94

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
              +           +  +    +  K +        + ++ +   +  +   +   I  
Sbjct: 95  MGLENDPIVLEHISAIEKRFYIQEYYKRNVSDLVFITDDDLLSYYNQNLSQFYQYPYITI 154

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI-GKAQYLLESD 241
                 +     +   + +   +  +        +  +    +I +V + G    +    
Sbjct: 155 DYIQAENEDAAKKALAELKKGISFATVSDTYNQNSYAKGLKGRIKNVRLNGNIPGIGNDI 214

Query: 242 LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE 301
                    +    N   P  T  G   + I D   + G       +  +         E
Sbjct: 215 ELENIIRNAQVDTLNFIGPVKTDYGWHILRIVDW--IEGYQKDFNEVKPEIEQRVRPMKE 272

Query: 302 AEYVKKLRSNAIIHY 316
            E +  L  N  I Y
Sbjct: 273 RELLNALTDNLKIKY 287


>gi|159162312|pdb|1FJD|A Chain A, Human Parvulin-Like Peptidyl Prolyl CisTRANS ISOMERASE,
           Hpar14
          Length = 104

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------LLKKS 253
           +I +A E      +      +++        G   ++    +   FQ             
Sbjct: 23  KIMEAMEKLKSGMRFNEVAAQYSED-KARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDK 81

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
              T  P  T+ G   I +  ++
Sbjct: 82  PVFTDPPVKTKFGYHIIMVEGRK 104


>gi|332532929|ref|ZP_08408801.1| peptidyl-prolyl cis-trans isomerase PpiC [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037595|gb|EGI74047.1| peptidyl-prolyl cis-trans isomerase PpiC [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 92

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 25/75 (33%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           ++  +D  +   +  K     +K++S       G         + PQF  +  K      
Sbjct: 15  KEIAEDIIKQLGKGAKFQTLAKKYSSCPSGKKGGDLGEFRRGQMVPQFDKIAFKGAILEP 74

Query: 259 NPYVTQKGVEYIAIC 273
           +   T+ G   I + 
Sbjct: 75  HLVKTKFGWHVIKVL 89


>gi|308050216|ref|YP_003913782.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ferrimonas balearica
           DSM 9799]
 gi|307632406|gb|ADN76708.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ferrimonas balearica
           DSM 9799]
          Length = 93

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 9/76 (11%), Positives = 23/76 (30%), Gaps = 1/76 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN-NT 257
           + + ++  +   +        +K ++       G      + D+ P F   +        
Sbjct: 15  EAKAQELLQQLEKGANFQTLAKKHSTCPSGKKGGHLGEFRKGDMVPTFDKAVFTGPILKP 74

Query: 258 TNPYVTQKGVEYIAIC 273
             P  T+ G   I + 
Sbjct: 75  IGPVKTKFGFHIIKVL 90


>gi|183179758|ref|ZP_02957969.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae MZO-3]
 gi|183013169|gb|EDT88469.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae MZO-3]
          Length = 157

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/157 (8%), Positives = 42/157 (26%), Gaps = 17/157 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++   ++     +    +++ F    + +Y   +  +     +    I+ GD  +  
Sbjct: 1   MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYL-ISGGNNAAAKVGNAEISRGDFEQAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                       K  +  ++ + L +Q     G+      V  
Sbjct: 60  QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRLSDEQVRQ 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
             ++  +       D +++                 Q
Sbjct: 120 LILEIPQFQSQGVFDSAAYQRLCVAQLTPEMYADTTQ 156


>gi|113970791|ref|YP_734584.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-4]
 gi|114048018|ref|YP_738568.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-7]
 gi|117921059|ref|YP_870251.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           ANA-3]
 gi|113885475|gb|ABI39527.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-4]
 gi|113889460|gb|ABI43511.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-7]
 gi|117613391|gb|ABK48845.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
           ANA-3]
          Length = 92

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 9/78 (11%), Positives = 25/78 (32%), Gaps = 1/78 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +++ +  ++  L            +S       G+        +  +F  ++  +  N  
Sbjct: 14  EEQCQALKQQILDGADFAQIARAHSSCPSGAQGGELGSFGPGMMVREFDEVVFSAPLNVV 73

Query: 259 -NPYVTQKGVEYIAICDK 275
             P  TQ G   + +  +
Sbjct: 74  QGPVKTQFGYHLLEVTSR 91


>gi|302697383|ref|XP_003038370.1| hypothetical protein SCHCODRAFT_63954 [Schizophyllum commune H4-8]
 gi|300112067|gb|EFJ03468.1| hypothetical protein SCHCODRAFT_63954 [Schizophyllum commune H4-8]
          Length = 165

 Score = 57.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 9/91 (9%), Positives = 22/91 (24%), Gaps = 1/91 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R   +  P      +  ++       +      K     +  +        G   +    
Sbjct: 71  RPSSWKEPTITRSKEEAIEILRGYQAQIGGNPDKFAELAQAHSDCSSHAHGGDLGWFSRG 130

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            +   F++          ++   T  GV  I
Sbjct: 131 QMQKPFEDTTYGLEVGQMSDVISTDSGVHLI 161


>gi|194692444|gb|ACF80306.1| unknown [Zea mays]
          Length = 306

 Score = 57.4 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 10/98 (10%), Positives = 28/98 (28%), Gaps = 1/98 (1%)

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQK 265
           +          +   + +      + G   ++    + P+F+     +  N      T+ 
Sbjct: 120 KNIIAEGADLSDLAVEHSLCPSKENGGMLGWVRRGQMVPEFEEAAFSAPLNKVVRCKTKF 179

Query: 266 GVEYIAICDKRDLGGEIALK-AYLSAQNTPTKIEKHEA 302
           G   + +  +RD      +    L A+       +   
Sbjct: 180 GWHLVQVLAERDQCVLQDIDPEELHAKLQDPSFLEEAQ 217


>gi|332375258|gb|AEE62770.1| unknown [Dendroctonus ponderosae]
          Length = 159

 Score = 57.4 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/104 (10%), Positives = 26/104 (25%), Gaps = 1/104 (0%)

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
           Q    +   +   R   +         +  ++      E+             K++    
Sbjct: 52  QCSHLLVKHKDSRRPSSWREEVITRSKEEALELVKMYREQIAQGKASFAELATKYSDCSS 111

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
               G      +  +   F++          ++P  T  GV  I
Sbjct: 112 AKRGGDLGPFGKGAMQKPFEDSAFSLKVGELSDPVFTDSGVHII 155


>gi|313623769|gb|EFR93906.1| foldase protein PrsA [Listeria innocua FSL J1-023]
          Length = 294

 Score = 57.4 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/281 (9%), Positives = 79/281 (28%), Gaps = 39/281 (13%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS 99
           S      +   +T  ++ + +                VQ+L  + + + +   +    ++
Sbjct: 24  SSAVVKTDAGNVTQDELYEAMKT--------TYGNEVVQQLTFKKILEDKYTVTEKEVNA 75

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
                             E +    +     +N  K        +  +V+          
Sbjct: 76  EY------------KKYEEQYGDSFESTLSSNNLTKTSFKENLEYNLLVQKATEANMNVS 123

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
           E ++    +        +  +R +L              +   K+ +       K  +  
Sbjct: 124 ESKLKTYYKTW----EPDITVRHIL-----------VDDEATAKEIQTKLKNGEKFADLA 168

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKR 276
           +++++      + G        ++   F+      K++++ +    +  G   I +  K 
Sbjct: 169 KEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYALKNKDDISGIVKSTYGYHLIQLVKKT 228

Query: 277 DLGGEIALKAYLS-AQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           + G     KA +  A        ++    +KK    A I  
Sbjct: 229 EKGTYAKEKANVKAAYIKSQLTSENMTAALKKELKAANIDI 269


>gi|254585847|ref|XP_002498491.1| ZYRO0G11572p [Zygosaccharomyces rouxii]
 gi|238941385|emb|CAR29558.1| ZYRO0G11572p [Zygosaccharomyces rouxii]
          Length = 162

 Score = 57.4 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 6/77 (7%), Positives = 23/77 (29%), Gaps = 1/77 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQ 254
               + ++  +          +  ++ +        G   +  + ++ P F+      + 
Sbjct: 83  EQAIQELEQLQNRIESGESFESLAKERSDCSSFKRGGDLGWFGKGEMQPTFEKTAFHLNV 142

Query: 255 NNTTNPYVTQKGVEYIA 271
              ++   +  GV  I 
Sbjct: 143 GQVSSIVESDSGVHLIK 159


>gi|241668619|ref|ZP_04756197.1| parvulin-like peptidyl-prolyl isomerase domain-containing protein
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254877153|ref|ZP_05249863.1| peptidyl-prolyl cis-trans isomerase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|11228674|gb|AAG33121.1|AF247686_1 putative parvulin [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254843174|gb|EET21588.1| peptidyl-prolyl cis-trans isomerase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 92

 Score = 57.4 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 9/81 (11%), Positives = 23/81 (28%), Gaps = 2/81 (2%)

Query: 197 FVQKRIKDAEESRLRLP-KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQ 254
             +   +  ++             +K +        G      +  + P+F + +     
Sbjct: 11  QSESECQQIKKDISEGKITFEEAAKKHSLCPSGARGGDLGTFSQGQMVPEFDKVVFNDEL 70

Query: 255 NNTTNPYVTQKGVEYIAICDK 275
           +    P  TQ G   + I  +
Sbjct: 71  HKVHGPVQTQFGYHLLEITSR 91


>gi|332307005|ref|YP_004434856.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332174334|gb|AEE23588.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 91

 Score = 57.4 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 20/76 (26%), Gaps = 1/76 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN- 255
             +K  +  +    +        +K +        G         +   F N++ K    
Sbjct: 11  KTEKEAQQLKTQLDKGANFQQLAKKHSLCPSGKKGGDLGEFSPGTMVKAFDNVVFKKDIL 70

Query: 256 NTTNPYVTQKGVEYIA 271
               P  TQ G   I 
Sbjct: 71  TVHGPVKTQFGFHLIK 86


>gi|58698186|ref|ZP_00373108.1| conserved hypothetical protein [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225630920|ref|YP_002727711.1| hypothetical protein WRi_012370 [Wolbachia sp. wRi]
 gi|58535336|gb|EAL59413.1| conserved hypothetical protein [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225592901|gb|ACN95920.1| hypothetical protein WRi_012370 [Wolbachia sp. wRi]
          Length = 381

 Score = 57.4 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 81/245 (33%), Gaps = 22/245 (8%)

Query: 37  AMSSRIRTTINGEVITDGDISKRIALLK-----LQKINGELEKIAVQELIVETLKKQEIE 91
           A    I   +NGE I++ DI KRI  +            E +   ++ELI E +   E +
Sbjct: 18  ATEIEIVADVNGEPISNLDIEKRINFINSLFGTQSVNQKEAKPQVLRELIDEIVIINEAQ 77

Query: 92  KSGITFDSNTVNYFFVQHARN-TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
           +  I   +  ++   +        L A +   +++K  I     ++ +  Q +W  +++ 
Sbjct: 78  RLNIKLSNEELDNAIMLFLTQSFKLKANEVDQYIEKHNIDLGILRKQIKCQLLWSKIIEV 137

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
             +      + EI   K++ +           ++    D  +        +      +  
Sbjct: 138 RIVPFINISDKEINDVKRQTEKPNYLITFQEFIIPDQKDKDVYGIAEDLVKKLRNSNNPE 197

Query: 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYI 270
              K        +        GK + +LE               ++   P+   +G   I
Sbjct: 198 SPIKMRKATVNLSQL-----KGKLKSVLEG-----------LETSDIAGPFSFSEGYSVI 241

Query: 271 AICDK 275
            + DK
Sbjct: 242 KVIDK 246


>gi|332187280|ref|ZP_08389019.1| hypothetical protein SUS17_2464 [Sphingomonas sp. S17]
 gi|332012701|gb|EGI54767.1| hypothetical protein SUS17_2464 [Sphingomonas sp. S17]
          Length = 296

 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/317 (9%), Positives = 70/317 (22%), Gaps = 57/317 (17%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKS---WAMSSRIRTTINGEVITDGDISKRIALL--- 63
              I    +  + +I     + + +      ++     T+NG  I   D+ +++  L   
Sbjct: 22  RSLILYAISAVLGLIIAGYGLFTAQGTRVGGIAPENAATVNGAPILRADLIQQVGSLYSI 81

Query: 64  KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
              + +    + A+ ++I E L  Q   + G+  D   V    V                
Sbjct: 82  SFAQASAAQRRKALDDMIREELHVQRGIEVGLPADDIDVRAALVGA-------------- 127

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                                  V ++    +    E+                 +    
Sbjct: 128 -------------------TDAQVAQDTLTEQPSAAELRA-WYVAHPDTYAAEGTMTLHE 167

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
                           +    A    L+     +  E++                     
Sbjct: 168 WIVPGAADAARAVAALRAGTPAATLGLKTSGRVDDGEEYYFAARIHLG-----------P 216

Query: 244 PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIE--K 299
             F    +      + P     G   +A+              +  +       KI   +
Sbjct: 217 ALFAIARRMRAGEVSEPIHAADGFHILAMVANAPPVPTPFAVARDQVLRDVQADKIARLQ 276

Query: 300 HEAEYVKKLRSNAIIHY 316
              +    L   A I  
Sbjct: 277 GANDRF--LYKRADIKI 291


>gi|328675822|gb|AEB28497.1| Peptidyl-prolyl cis-trans isomerase ppiC [Francisella cf. novicida
           3523]
          Length = 92

 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 9/81 (11%), Positives = 22/81 (27%), Gaps = 2/81 (2%)

Query: 197 FVQKRIKDAEESRLRLP-KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQ 254
             +   +  ++              K +        G      +  + P+F + +     
Sbjct: 11  QSESECQQIKKDITEGKITFEEAARKHSLCPSGARGGDLGTFSQGQMVPEFDRVVFNDEL 70

Query: 255 NNTTNPYVTQKGVEYIAICDK 275
           +    P  TQ G   + I  +
Sbjct: 71  HTVHGPVQTQFGYHLLEITSR 91


>gi|194273637|gb|ACF39177.1| putative parvulin [Francisella novicida]
          Length = 88

 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 9/81 (11%), Positives = 22/81 (27%), Gaps = 2/81 (2%)

Query: 197 FVQKRIKDAEESRLRLP-KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQ 254
             +   +  ++              K +        G      +  + P+F + +     
Sbjct: 7   QSESECQQIKKDITEGKITFEEAARKHSLCPSGARGGDLGTFSQGQMVPEFDRVVFNDEL 66

Query: 255 NNTTNPYVTQKGVEYIAICDK 275
           +    P  TQ G   + I  +
Sbjct: 67  HTVHGPVQTQFGYHLLEITSR 87


>gi|317406836|gb|EFV86940.1| hypothetical protein HMPREF0005_05960 [Achromobacter xylosoxidans
           C54]
          Length = 104

 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 3/75 (4%)

Query: 237 LLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNT 293
           +  + L P+ + ++++        P  +  G   + + D R         +K  L A   
Sbjct: 1   MPLAQLTPEMRPVIEQLKAGEVAAPVQSAAGFHILKLVDLRAASVAPYEQVKDELRAALR 60

Query: 294 PTKIEKHEAEYVKKL 308
             + E     Y++ L
Sbjct: 61  TQRQELAARAYLEGL 75


>gi|219124233|ref|XP_002182413.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406374|gb|EEC46314.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 76

 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 19/72 (26%), Gaps = 3/72 (4%)

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ---NLLKKSQNNTTNPYVT 263
           +            +K+++       G      +  + P F             T  P  T
Sbjct: 5   KINNDANLFAKYAKKYSACPSKNQGGNLGKFKQGAMAPPFDKACFSPISKVGETLGPIQT 64

Query: 264 QKGVEYIAICDK 275
           Q G   I I  +
Sbjct: 65  QFGWHLIYIQSR 76


>gi|27468439|ref|NP_765076.1| hypothetical protein SE1521 [Staphylococcus epidermidis ATCC 12228]
 gi|46396902|sp|Q8CNR4|PRSA_STAES RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|27315986|gb|AAO05120.1|AE016749_66 prsA [Staphylococcus epidermidis ATCC 12228]
          Length = 325

 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/309 (12%), Positives = 94/309 (30%), Gaps = 27/309 (8%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +KL+    V +    + + +  S A  S+     +  +I+      ++A +  +    ++
Sbjct: 1   MKLMNKIIVPVTASALLLGACGSNATESK-----DNTLISSKAGDVKVADVMKKMGKEQI 55

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
              +   ++ + L     +K     D+  ++    +  +  G   +  S    +      
Sbjct: 56  ANTSFSIVLNKVL----ADKYKDKVDTKDIDKDIKKEEKQYGGKDQFESMLKQQ-----G 106

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                   Q       K   + K    + EI        +      LI+    S     L
Sbjct: 107 MSFDDYKEQKKLSAYQKQLLLDKVNVSDKEIK-----ENSKKASHILIKVKSKSSDKEGL 161

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNL-L 250
            ++   +K  K  +E      K     +K +         G   Y+++  +   F+    
Sbjct: 162 SDKKAKEKAEKIQKEVEKNPNKFGEIAKKESMDSSSAKKDGSLGYVIKGQMVDSFEKALF 221

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH---EAEYVKK 307
           K  +   +    T  G   I            + K+ +  +    K++K      +  K+
Sbjct: 222 KLKEGEVSKVVKTDYGYHIIKAD---KETDFNSEKSNIKQKLIEEKVQKKPKLLTDAYKE 278

Query: 308 LRSNAIIHY 316
           L     + Y
Sbjct: 279 LLKEYKVDY 287


>gi|312129915|ref|YP_003997255.1| ppic-type peptidyl-prolyl cis-trans isomerase [Leadbetterella
           byssophila DSM 17132]
 gi|311906461|gb|ADQ16902.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leadbetterella
           byssophila DSM 17132]
          Length = 768

 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/220 (8%), Positives = 57/220 (25%), Gaps = 4/220 (1%)

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
           +  ++ D   +                    F+ +         +    Q      +   
Sbjct: 51  RKELSIDLENMVKLDSGSHEEILQELLQRKLFIAEARSQGMDTTENFREQI--QSHLSLA 108

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                 +         +  +            +   P     +   +   +       ++
Sbjct: 109 VASALEDHSEIRKLENEAYERYLKEVNASHLFVPISPYAAPADTLKLYNELLQIRNMAIQ 168

Query: 212 LPKDCNKLEKFASKI-HDVSIGKAQYLLESDLH-PQFQNLLKKSQNNTTNPYVTQKGVEY 269
                 + ++++       S G+  +     L  P    + K  +++ + P  T  G   
Sbjct: 169 NKDFETQAKRWSKDPKTASSGGQLGWFSVFYLVYPLESAVYKVPKDSISLPVRTPAGYHL 228

Query: 270 IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
           I + D R   G + ++         ++ ++   + +  LR
Sbjct: 229 IKVNDIRKSSGMVQIQHIFKHIGPESEDKETLRKQLDSLR 268



 Score = 41.2 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/154 (9%), Positives = 45/154 (29%), Gaps = 3/154 (1%)

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
               +          +    +F     + +++  ++K++       L        +E+ +
Sbjct: 226 YHLIKVNDIRKSSGMVQIQHIFKHIGPESEDKETLRKQLDSLRTEILNGLPFETAVEQHS 285

Query: 224 SK-IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
                  + G  Q        P F+  +    +   + P  +  G+  + + D+      
Sbjct: 286 DDFNSKPNKGILQPFGVGKTEPGFEEAVFALKKGEISMPIQSSTGLHLVKVIDRLKPLTR 345

Query: 282 IALKAYLSAQNTPTKIEKHEA-EYVKKLRSNAII 314
                   A+ T     ++   + +   R+   +
Sbjct: 346 SQFIEQNRAKITTDSRGEYLRLKQINDFRAKNNV 379


>gi|163858138|ref|YP_001632436.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Bordetella petrii DSM 12804]
 gi|163261866|emb|CAP44168.1| PPIC-type PPIASE domain protein [Bordetella petrii]
          Length = 248

 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/156 (11%), Positives = 49/156 (31%), Gaps = 4/156 (2%)

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
              +   + ++     +  +LF +       +   +      E  R       +   +++
Sbjct: 80  YYEQHPGQFLSGALVEVWHILFQLTPRVDPRRLRARAGEVLQEVHRAAPDAFADYARQYS 139

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN--TTNPYVTQKGVEYIAICDKRDLGG- 280
           + +     G+   +   D  P+F+  +     +        T+ G   +    K +    
Sbjct: 140 NCMSAQEGGRLGDIGRGDTLPEFEQAVFAMPAHTLLDRLVQTRHGFHIVRTGRKVEGTPM 199

Query: 281 -EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
              A+ A ++A        +   +Y++ L   A I 
Sbjct: 200 AFDAVHARIAAWLAQASERRATHQYLQWLVGQARIE 235


>gi|148973943|ref|ZP_01811476.1| peptidyl-prolyl cis-trans isomerase C [Vibrionales bacterium
           SWAT-3]
 gi|145965640|gb|EDK30888.1| peptidyl-prolyl cis-trans isomerase C [Vibrionales bacterium
           SWAT-3]
          Length = 92

 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 9/75 (12%), Positives = 26/75 (34%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +++ +D  +   +  K     +K ++       G      +  + PQF  +    +    
Sbjct: 15  KEQAEDIIKQLKKGAKFQTLAKKHSTCPSGKKGGDLGEFQKGQMVPQFDKVCFSGETLVP 74

Query: 259 NPYVTQKGVEYIAIC 273
           +   T+ G   + + 
Sbjct: 75  HLVKTKFGWHVVKVL 89


>gi|126322893|ref|XP_001363694.1| PREDICTED: similar to protein (peptidyl-prolyl cis/trans isomerase)
           NIMA-interacting 1 [Monodelphis domestica]
          Length = 159

 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 7/106 (6%), Positives = 25/106 (23%), Gaps = 1/106 (0%)

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
             +    +       R   +         +  ++      ++ +           +++  
Sbjct: 50  KVRCSHLLVKHNQSRRPSSWRQEKITRSKEEALELINGYIQKIKSGEDDFETLASQYSDC 109

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
               + G         +   F++          + P  T  G+  I
Sbjct: 110 SSAKARGDLGTFGRGQMQKPFEDASFALRTGEMSGPVFTDSGIHII 155


>gi|57867315|ref|YP_188945.1| protein export protein PrsA [Staphylococcus epidermidis RP62A]
 gi|293366181|ref|ZP_06612867.1| foldase PrsA [Staphylococcus epidermidis M23864:W2(grey)]
 gi|81674051|sp|Q5HN96|PRSA_STAEQ RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|57637973|gb|AAW54761.1| protein export protein PrsA, putative [Staphylococcus epidermidis
           RP62A]
 gi|291319703|gb|EFE60063.1| foldase PrsA [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329734300|gb|EGG70615.1| putative foldase protein PrsA [Staphylococcus epidermidis VCU045]
 gi|329737249|gb|EGG73503.1| putative foldase protein PrsA [Staphylococcus epidermidis VCU028]
          Length = 325

 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/309 (12%), Positives = 94/309 (30%), Gaps = 27/309 (8%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +KL+    V +    + + +  S A  S+     +  +I+      ++A +  +    ++
Sbjct: 1   MKLMNKIIVPVTASALLLGACGSNATESK-----DNTLISSKAGDVKVADVMKKMGKEQI 55

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
              +   ++ + L     +K     D+  ++    +  +  G   +  S    +      
Sbjct: 56  ANTSFSIVLNKVL----ADKYKDKVDTKDIDKDIKKEEKQYGGKDQFESMLKQQ-----G 106

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                   Q       K   + K    + EI        +      LI+    S     L
Sbjct: 107 MSLDDYKEQKKLSAYQKQLLLDKVNVSDKEIK-----ENSKKTSHILIKVKSKSSDKEGL 161

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNL-L 250
            ++   +K  K  +E      K     +K +         G   Y+++  +   F+    
Sbjct: 162 SDKKAKEKAEKIQKEVEKNPNKFGEIAKKESMDSSSAKKDGSLGYVIKGQMVDSFEKALF 221

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH---EAEYVKK 307
           K  +   +    T  G   I            + K+ +  +    K++K      +  K+
Sbjct: 222 KLKEGEVSKVVKTDYGYHIIKAD---KETDFNSEKSNIKQKLIEEKVQKKPKLLTDAYKE 278

Query: 308 LRSNAIIHY 316
           L     + Y
Sbjct: 279 LLKEYKVDY 287


>gi|114776940|ref|ZP_01451983.1| peptidyl-prolyl cis-trans isomerase C [Mariprofundus ferrooxydans
           PV-1]
 gi|114553026|gb|EAU55457.1| peptidyl-prolyl cis-trans isomerase C [Mariprofundus ferrooxydans
           PV-1]
          Length = 100

 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 1/77 (1%)

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTT 258
            + +  +              K ++       G      E  +  +F +++  ++ +   
Sbjct: 22  AQCEALKAEIEAGADFAELARKHSTCPSASKGGDLGEFRERQMVKEFNDVVFSAELHTVH 81

Query: 259 NPYVTQKGVEYIAICDK 275
            P  TQ G   I I  +
Sbjct: 82  GPVKTQFGYHLIEITAR 98


>gi|15606037|ref|NP_213414.1| hypothetical protein aq_592 [Aquifex aeolicus VF5]
 gi|2983223|gb|AAC06821.1| hypothetical protein aq_592 [Aquifex aeolicus VF5]
          Length = 437

 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/331 (11%), Positives = 98/331 (29%), Gaps = 21/331 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVIT----DGDI 56
           M   +       + ++T   +  +F +  +   K     +    T+  E IT      ++
Sbjct: 1   MFGLIQKHKRIAVIIVTLASLSFLFWMFSVSDVKQMLTGNPCVATVGDECITLREYRFEL 60

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF---VQHARNT 113
            K    L+ ++      ++A+  LI + +   + ++ G       V              
Sbjct: 61  LKYSNFLQDERTEKLARRVALNSLITKEVLYLKAKELGWYVSDEEVVEVIKNDENFKEKG 120

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
             S E +   L++ G+    +++ +    +   V+       Y   +      +     +
Sbjct: 121 KFSVEKYRETLNRFGLTPAEYEEIVRKSLMAQRVLNFLREGVYVLPDELDIQKRFYSLRV 180

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC----NKLEKFASKIHDV 229
             + YLI+     +     + +          +                 EK      ++
Sbjct: 181 EGKLYLIKPSDVKVDYEPSEEEIKEYYEKNKEKFKEEEKEVVYVWSLKDKEKVKEYYENL 240

Query: 230 SIGKAQ----YLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE---- 281
             G          E+      + + + +Q N        +    +    K + G +    
Sbjct: 241 KKGSIPSGYTEFNENLPPKVKEAVKELNQENRIKVVRVGENYYLLYYKGKENAGYKPLEE 300

Query: 282 --IALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
               +K  L A+    K+++   E  K L+ 
Sbjct: 301 VKEEIKKELVAKKQREKLKEFAQEVFKNLKE 331



 Score = 35.8 bits (80), Expect = 8.5,   Method: Composition-based stats.
 Identities = 14/119 (11%), Positives = 38/119 (31%), Gaps = 1/119 (0%)

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN- 256
            +K+ +  +E    + K+  + ++   K    S    + +    +  Q   L        
Sbjct: 311 AKKQREKLKEFAQEVFKNLKEGKEVGVKPLAFSSASLEEIQRILMVEQKDLLNLVFGKEK 370

Query: 257 TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
              PY +  G   + + +++    +      +  +    K       +V+KL     + 
Sbjct: 371 VYGPYPSLAGYGILVVKNRKFEELKPEQVKEIERELKDNKFNDLAGLFVEKLIKEYGVK 429


>gi|86144485|ref|ZP_01062817.1| peptidyl-prolyl cis-trans isomerase [Vibrio sp. MED222]
 gi|218676075|ref|YP_002394894.1| Peptidyl-prolyl cis-trans isomerase C [Vibrio splendidus LGP32]
 gi|85837384|gb|EAQ55496.1| peptidyl-prolyl cis-trans isomerase [Vibrio sp. MED222]
 gi|218324343|emb|CAV25695.1| Peptidyl-prolyl cis-trans isomerase C [Vibrio splendidus LGP32]
          Length = 92

 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 9/75 (12%), Positives = 24/75 (32%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           ++  +D      +  K     +K ++       G      +  + PQF  +    +    
Sbjct: 15  KELAEDIMTQLKKGAKFQTLAKKHSTCPSGKKGGDLGEFKKGQMVPQFDKICFSGETLVP 74

Query: 259 NPYVTQKGVEYIAIC 273
           +   T+ G   + + 
Sbjct: 75  HLVKTKFGWHVVKVL 89


>gi|119386937|ref|YP_917992.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paracoccus
           denitrificans PD1222]
 gi|119377532|gb|ABL72296.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paracoccus
           denitrificans PD1222]
          Length = 267

 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 40/127 (31%), Gaps = 2/127 (1%)

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
           +         +      E R    +      ++++     + G    L   D  P+F  +
Sbjct: 130 DTSARTEARARAEAVLAELRAEPRRFAELAARYSACSSKTAGGMLGQLTSGDTVPEFDAV 189

Query: 250 LKKSQNNTTNPYVTQKGVEYIAIC--DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
           L   +        T+ G+  I +    + ++    ++   L   +      +   +Y+  
Sbjct: 190 LATMEEGALALAETRYGLHVIRLDARARGEVLPFESVLPQLRQAHDKAAWLRASRDYLDG 249

Query: 308 LRSNAII 314
           L + A I
Sbjct: 250 LVAGAEI 256


>gi|304410941|ref|ZP_07392558.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS183]
 gi|307304888|ref|ZP_07584638.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           BA175]
 gi|304350838|gb|EFM15239.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           OS183]
 gi|306912290|gb|EFN42714.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
           BA175]
          Length = 92

 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 9/75 (12%), Positives = 25/75 (33%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +++ +D  +            ++F+S       G      +  + PQF  +    +    
Sbjct: 15  KEQAEDIVKQLNNGANFSVLAKRFSSCPSAKKGGDLGEFKKGQMVPQFDKVAFSGELLVP 74

Query: 259 NPYVTQKGVEYIAIC 273
           +   T+ G   + + 
Sbjct: 75  HIVKTKFGWHVVKVL 89


>gi|73662267|ref|YP_301048.1| peptidyl-prolyl cis trans isomerase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72494782|dbj|BAE18103.1| peptidyl-prolyl cis trans isomerase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 330

 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 88/309 (28%), Gaps = 30/309 (9%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
            K +          +    +  + +    I ++  G+V     +   +  +  ++I    
Sbjct: 4   FKKVLLPVTASALLLGACGNSATDSKEDTIISSKAGDV----KVEDVMNKMGDEQIANTS 59

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
             I + +L+ +  K           ++  ++    +  +  G   +  S    ++     
Sbjct: 60  FSIMLNKLLADKYK--------DDVNTKDIDKEVEKEQKQYGGKDQFESMLKQQKMS--- 108

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                   Q       K     K    + EI               LI+          L
Sbjct: 109 --IGDYKEQKKLQAYQKELLNDKVSMSDKEIK-----ENTKKGSHILIKVKENKDDKEGL 161

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNL-L 250
            ++    K  K  +E      K     +K +  K      G   Y+++  +  +F+    
Sbjct: 162 SDKEAKAKAEKIQKEVEKHPDKFGEIAKKESMDKASAKKDGSLGYVVKGQMEDKFEKALF 221

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE---KHEAEYVKK 307
           K  +   ++   T  G   I              K  L AQ   TKI+   K   +  K+
Sbjct: 222 KLKEGKVSDVVKTDYGYHIIKAD---KENDFDKEKGKLKAQLIQTKIQKDPKLLTDAYKE 278

Query: 308 LRSNAIIHY 316
           L     + Y
Sbjct: 279 LLDEYKVDY 287


>gi|289809592|ref|ZP_06540221.1| peptidyl-prolyl cis-trans isomerase C [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 72

 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 1/65 (1%)

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIA 271
                  +K +        G      +  + P F + +        T P  TQ G   I 
Sbjct: 8   GDFEKLAKKHSICPSGKKGGHLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIK 67

Query: 272 ICDKR 276
           +  ++
Sbjct: 68  VLYRK 72


>gi|304413823|ref|ZP_07395240.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Candidatus
           Regiella insecticola LSR1]
 gi|304283543|gb|EFL91938.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Candidatus
           Regiella insecticola LSR1]
          Length = 623

 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/362 (9%), Positives = 90/362 (24%), Gaps = 86/362 (23%)

Query: 37  AMSSRIRTTINGEVITDGDISKRIALLKLQKING----------------ELEKIAVQEL 80
             ++     +NGE I+   + +     + +                    +L +  +++L
Sbjct: 35  GGANDYAAKVNGEKISQAKLEQAFQSERARMQQQLGEQFSTLASNESYMSKLRQQTLEQL 94

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN-------- 132
           I   L  Q  +K G+T     V     Q       +  D + +L+               
Sbjct: 95  INNVLLNQYTQKLGLTVSDEQVKESIRQIPYFQTDNKFDNTKYLNLINSMGYKPDQFAQL 154

Query: 133 ----------------------HFKQYLAIQSIWPDVVK------NDFMLKYGNLEMEIP 164
                                    +  A   +    V+      N           E+ 
Sbjct: 155 QLQQLILQQLLQAVGSSEFILPMEMKKTAELVLQQRDVRLATIDVNALQAHQKVTNTELK 214

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR------------- 211
               + K   +    I+     +   ++Q +  V ++  ++   + +             
Sbjct: 215 NYYHQNKKDFIAPAEIKISYIFMDMAEIQKKITVSEKEIESYYQQHKNNYIQPERKHFSV 274

Query: 212 ------------------LPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK 252
                                     ++ +   I   + G   +L  S    + +     
Sbjct: 275 IQLKTEKEAQAILAELKTGADFATLAKQKSVDIISRKNGGTLGWLEASMTLDELKQANLT 334

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGG--EIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
            +   ++   +  G   + + D +         ++  L  +    K         +++ +
Sbjct: 335 EKGQLSDVIKSSVGYLIVRLNDIKPEQSRAFKEVRTELLKKVQQEKTLDAYYALQQQVST 394

Query: 311 NA 312
            A
Sbjct: 395 AA 396


>gi|195611718|gb|ACG27689.1| isomerase [Zea mays]
          Length = 306

 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/98 (10%), Positives = 28/98 (28%), Gaps = 1/98 (1%)

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQK 265
           +          +   + +      + G   ++    + P+F+     +  N      T+ 
Sbjct: 120 KNIIAEGADLSDLAVEHSLCPSKENGGMLGWVRRGQMVPEFEEAAFSAPLNKVVRCKTKF 179

Query: 266 GVEYIAICDKRDLGGEIALK-AYLSAQNTPTKIEKHEA 302
           G   + +  +RD      +    L A+       +   
Sbjct: 180 GWHLVQVLAERDQCVLQDIDPEQLHAKLQDPSFLEEAQ 217


>gi|167628081|ref|YP_001678581.1| parvulin-like peptidyl-prolyl isomerase domain-containing protein
           [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167598082|gb|ABZ88080.1| parvulin-like peptidyl-prolyl isomerase domain protein [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 92

 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 9/71 (12%), Positives = 21/71 (29%), Gaps = 1/71 (1%)

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQ 264
           ++            +K +        G      +  + P+F + +     +    P  TQ
Sbjct: 21  KDISEGKITFEEAAKKHSLCPSGARGGDLGTFSQGQMVPEFDKVVFNDELHKVHGPVQTQ 80

Query: 265 KGVEYIAICDK 275
            G   + I  +
Sbjct: 81  FGYHLLEITSR 91


>gi|120609364|ref|YP_969042.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
           AAC00-1]
 gi|120587828|gb|ABM31268.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
           AAC00-1]
          Length = 303

 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/180 (8%), Positives = 51/180 (28%), Gaps = 6/180 (3%)

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF--SIPDNKLQNQG 196
           A Q+I   + +   +                 +        +R VL+  +   +  + + 
Sbjct: 108 ATQAIEALLEQALAVPDPSEDACRRHYEAHTARYRDGERVHLRHVLYAVTPGVDVQRLRE 167

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK--KSQ 254
             +  +     +            ++++       G   +L   D  P+F   +   +  
Sbjct: 168 RAEAELLQLRCAHDGGEAFARAARQWSNCPTGAEGGDLGWLARGDCAPEFAREVFGAQEV 227

Query: 255 NNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
                   ++ G+  + +  +      G   ++  ++             +Y++ L   A
Sbjct: 228 GVLPRLVHSRFGLHVVEVVARDAGRQRGYGEVREAVALALRQQSWVNALRQYLQVLAGEA 287


>gi|1574034|gb|AAC22665.1| peptidyl-prolyl cis-trans isomerse, putative [Haemophilus
           influenzae Rd KW20]
          Length = 594

 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/352 (10%), Positives = 90/352 (25%), Gaps = 83/352 (23%)

Query: 44  TTINGEVITDGDISKRIAL---LKLQKING-------------ELEKIAVQELIVETLKK 87
             +NGEVI+  D   R      ++ Q+                 L +  V  +I + L +
Sbjct: 16  AKVNGEVISQQDFLNRYNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLR 75

Query: 88  QEIEKSGITFDSNTVNYFF---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
           Q +++  +      +                    +   L +  +  + +   L      
Sbjct: 76  QYVKELKLGVSDEMIKRAIVTDPNFQVKGKFDNAVYQRILQQNHLTSDGYASILRASLPL 135

Query: 145 PDVVK---------------------------------NDFMLKYGNLEMEIPANKQKMK 171
             +                                    D M K    + EI    +  +
Sbjct: 136 EQIQNGVANSEFIVPAQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQ 195

Query: 172 NITVREYLIRTVL----------------------------FSIPDNKLQNQGFVQKRIK 203
              V+   ++                                 +  +    Q   ++  K
Sbjct: 196 KSFVQPEQVKVQYIDLSADNISRNLQVTDVEIAQYYQDNKAQFMTQHLAHIQFANEQDAK 255

Query: 204 DAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPY 261
            A E   +     +  +  +  KI   + G   ++ E++L   F++          + P 
Sbjct: 256 VAYEELQKGANFADVAKAKSLDKISGENGGDLGWVNENELPKAFEDAAAALQVGQYSQPI 315

Query: 262 VTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                   + + +++       +KA ++     + +E       K+    A 
Sbjct: 316 NVDGNYHIVLVQERK-AQSLENVKAQIADLVRKSLMESRYFSLEKQASDKAF 366


>gi|164686191|ref|ZP_02210221.1| hypothetical protein CLOBAR_02629 [Clostridium bartlettii DSM
           16795]
 gi|164601793|gb|EDQ95258.1| hypothetical protein CLOBAR_02629 [Clostridium bartlettii DSM
           16795]
          Length = 198

 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/191 (10%), Positives = 57/191 (29%), Gaps = 8/191 (4%)

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
           + K+     +  +    Q I  +++   ++ +Y N+  +   N  +      ++     +
Sbjct: 1   MKKEYFEKFNLTEEKLKQRIKKELMGAKYLEEYSNVSEDEARNYFEKNKNDYKQIRASHI 60

Query: 184 LFSIPDNKLQN-----QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
           L S  D+  +      +   +K  ++  +  L         ++++        G   Y  
Sbjct: 61  LISNYDSNNKEVSDDKKEENKKTAEEVLKLALDGEDFATLAKEYSDDSSASKGGDLGYFT 120

Query: 239 ESDLHPQF-QNLLKKSQNNTT-NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK 296
           + ++   F +                T  G   I    ++D   +      +      TK
Sbjct: 121 QDEMVSAFSKAAFSLKTGEIYNKVVETSSGYHIIKKTGEKDQDFDDVKDDLIK-TLESTK 179

Query: 297 IEKHEAEYVKK 307
                 +   K
Sbjct: 180 QSTLMQDLYTK 190


>gi|150011009|gb|ABR57161.1| foldase protein precursor [Staphylococcus xylosus]
          Length = 329

 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/309 (12%), Positives = 90/309 (29%), Gaps = 30/309 (9%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K +          +    +  + +    I ++  G+V     +   +  +  ++I    
Sbjct: 4   LKKVILPVTASALLLGACGNSATDSKEDTIISSKAGDV----KVEDVMNKIGDEQIANSS 59

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
             I + +L+ +  K           ++  ++    +  +  G   +  S    ++     
Sbjct: 60  FSILLNKLLADKYK--------DEVNTKDIDKEVEKEQKQYGGKDQFESMLKQQKMSLG- 110

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                   Q       K     K    + EI               LI+          L
Sbjct: 111 ----DYKEQKKLQAYQKELLNDKVDISDKEIK-----KDTKKGSHILIKVKENKDDKEGL 161

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNL-L 250
            ++    K  K  ++      K     +K +  K      G   Y+++  +  +F+    
Sbjct: 162 SDKDAKAKAEKIQKQVEKDPDKFGEIAKKESMDKSSGKKDGSLGYVIKGQMEDKFEKALF 221

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH---EAEYVKK 307
           K  + N ++   T  G   I              K  L +Q   +K++K      +  K+
Sbjct: 222 KLKEGNISDVVKTDYGYHIIKAD---KQDDFDKEKGKLKSQLIQSKVQKEPKLLTDAYKE 278

Query: 308 LRSNAIIHY 316
           L     + Y
Sbjct: 279 LLDEYKVDY 287


>gi|319639214|ref|ZP_07993965.1| hypothetical protein HMPREF0604_01589 [Neisseria mucosa C102]
 gi|317399398|gb|EFV80068.1| hypothetical protein HMPREF0604_01589 [Neisseria mucosa C102]
          Length = 290

 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/304 (8%), Positives = 72/304 (23%), Gaps = 20/304 (6%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +  TYF   +   +   +  +         T+NG+ I    I  ++A ++    N +   
Sbjct: 1   MKKTYFASALMLALTSGTLFAQT-----LVTVNGQAIDSSVIDDQVASVRASNPNIQDTP 55

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
              Q L    +    + +       +               +  D +     +       
Sbjct: 56  ELRQMLTERQVISTVVTQEAKKLKLDQSAE----FKAALEQARADAAKQGADKKPTFKTE 111

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                   +      +         +    A           + +    + +  ++  Q 
Sbjct: 112 WAAFENDLLGQAFAAHIIRQFPVQEKDVKAAYNDFSNFYKGTQEVQLGEIVTDSNSNAQK 171

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ 254
                   K       +   D    +        V +       +    P ++ +    +
Sbjct: 172 AIADLDAKKSFVSVLNQYSIDEAAKKAGGIPKAYVPLKDL----QESAPPLYEAVKDLKK 227

Query: 255 NNTTN-PYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
              T  P           + D+R+  +    A K  + +     ++       +      
Sbjct: 228 GAHTKTPLQNGNLYAVFYVNDRRNVTVPSYEASKNEIGSDLQGARVNAAIQSLL----KK 283

Query: 312 AIIH 315
           A I 
Sbjct: 284 ASIK 287


>gi|282875776|ref|ZP_06284643.1| PPIC-type PPIASE domain protein [Staphylococcus epidermidis SK135]
 gi|281294801|gb|EFA87328.1| PPIC-type PPIASE domain protein [Staphylococcus epidermidis SK135]
 gi|329724902|gb|EGG61405.1| PPIC-type PPIASE domain protein [Staphylococcus epidermidis VCU144]
          Length = 325

 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/309 (12%), Positives = 94/309 (30%), Gaps = 27/309 (8%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +KL+    V +    + + +  S A  S+     +  +I+      ++A +  +    ++
Sbjct: 1   MKLMNKIIVPVTASALLLGACGSNATESK-----DNTLISSKAGDVKVADVMKKMGKEQI 55

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
              +   ++ + L     +K     D+  ++    +  +  G   +  S    +      
Sbjct: 56  ANTSFSIVLNKVL----ADKYKDKVDTKDIDKDIKKEEKQYGGKDQFESMLKQQ-----G 106

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                   Q       K   + K    + EI        +      LI+    S     L
Sbjct: 107 MSLDDYKEQKKLSAYQKQLLLDKVNVSDKEIK-----ENSKKASHILIKVKSKSSDKEGL 161

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNL-L 250
            ++   +K  K  +E      K     +K +         G   Y+++  +   F+    
Sbjct: 162 SDKKAKEKAEKIQKEVEKNPNKFGEIAKKESMDSSSAKKDGSLGYVIKGQMVDSFEKALF 221

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH---EAEYVKK 307
           K  +   +    T  G   I            + K+ +  +    K++K      +  K+
Sbjct: 222 KLKEGEVSKVVKTDYGYHIIKAD---KETDFNSEKSNIKQKLIEEKVQKKPKLLTDAYKE 278

Query: 308 LRSNAIIHY 316
           L     + Y
Sbjct: 279 LLKEYKVDY 287


>gi|213018605|ref|ZP_03334413.1| hypothetical protein C1A_378 [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212995556|gb|EEB56196.1| hypothetical protein C1A_378 [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 365

 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 85/245 (34%), Gaps = 28/245 (11%)

Query: 37  AMSSRIRTTINGEVITDGDISKRIALLKLQK-----INGELEKIAVQELIVETLKKQEIE 91
           A    I   +NGE I++ DI +RI  +            E++   +++LI E +   E +
Sbjct: 8   ATEIEIVADVNGEPISNLDIERRINFINSLLGTQKINQKEVKSQILRQLIDEIIIVSEAQ 67

Query: 92  KSGITFDSNTVNYFFVQHARN-TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
           K  I   +  +N            L A++   ++ K  I  N  K+ +  Q +W  +++ 
Sbjct: 68  KMNIELSNEELNNAVTLFLTQSLKLKADEVDQYVKKHNIDLNTLKKQIKCQLLWNKIIEV 127

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
             +      + E+   +++ +           ++      +   +        ++     
Sbjct: 128 GVVPLINISDQEVDDARKQKEKSDYLITFQEFIIPDQKIAEDLVKKLRTSNNPESSIKMS 187

Query: 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYI 270
           +   + ++L+           GK + +LE               ++   P    +G   I
Sbjct: 188 KATVNLSQLK-----------GKLKDVLEG-----------LEISDVAGPVSLSEGYSVI 225

Query: 271 AICDK 275
            + DK
Sbjct: 226 KVIDK 230


>gi|125605671|gb|EAZ44707.1| hypothetical protein OsJ_29333 [Oryza sativa Japonica Group]
          Length = 162

 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 7/60 (11%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 219 LEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRD 277
            ++++        G   +     +   FQ++   +    T+ P+ +  G  +I    +++
Sbjct: 103 AQEYSECPSGKKGGDLGWFPRGKMAGPFQDVAFSTPVGATSAPFKSTHGYHFILCEGRKN 162


>gi|260774240|ref|ZP_05883155.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio metschnikovii CIP
           69.14]
 gi|260611201|gb|EEX36405.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio metschnikovii CIP
           69.14]
          Length = 92

 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 4/77 (5%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +++  +  +   +  K     +K++        G      +  + P F       Q    
Sbjct: 15  KEQADELLQQLKKGAKFQTLAKKYSLCPSGKRGGDLGEFRQGQMVPAFDKA--CFQGEIL 72

Query: 259 NP--YVTQKGVEYIAIC 273
            P    T+ G   I + 
Sbjct: 73  TPQLVKTKFGWHVIKVL 89


>gi|226329062|ref|ZP_03804580.1| hypothetical protein PROPEN_02965 [Proteus penneri ATCC 35198]
 gi|225202248|gb|EEG84602.1| hypothetical protein PROPEN_02965 [Proteus penneri ATCC 35198]
          Length = 276

 Score = 57.4 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/238 (8%), Positives = 69/238 (28%), Gaps = 19/238 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + ++ ++    +    +++ F +  +  Y   +  +     +NG  I+   + +  
Sbjct: 1   MMDNIRSTANNPFIKILLAVIILSFVLTGVGGYLFSSGVND-AAEVNGYKISRSQLEQAY 59

Query: 61  ALLKLQKINGE----------------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + Q                     + + A+  LI + L  Q  +K GI+     +  
Sbjct: 60  QQRRAQLQQDMGENFAALASSEEGQKLIRQQALDLLINQALLDQFAQKLGISAGDQQIRD 119

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
                         D   ++D     +     +   + I  +++           +  + 
Sbjct: 120 AIFALPYFQTNGKFDNKKYVDLLKGNNIDADAF--AEGIRQNLINQQLKFSIQGTDFALD 177

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +  ++   + ++   +R     I     +     ++     E++             +
Sbjct: 178 SEVKEFAGLMLQSRNVRLASLDIQPFLEKETASDEEVKAFYEQNNQMFIAPEQFKISY 235


>gi|254367995|ref|ZP_04984015.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           holarctica 257]
 gi|134253805|gb|EBA52899.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
           holarctica 257]
          Length = 92

 Score = 57.0 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 9/75 (12%), Positives = 21/75 (28%), Gaps = 1/75 (1%)

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNP 260
            +  ++             K +        G      +  + P+F + +     +    P
Sbjct: 17  QQIKKDITEGKITFEEAARKHSLCPSGARGGDLGTFSQGQMVPEFDRVVFNDELHKVHGP 76

Query: 261 YVTQKGVEYIAICDK 275
             TQ G   + I  +
Sbjct: 77  VQTQFGYHLLEITSR 91


>gi|296232841|ref|XP_002761761.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           1-like isoform 2 [Callithrix jacchus]
          Length = 174

 Score = 57.0 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 25/103 (24%), Gaps = 1/103 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +       R   +         +  ++      ++ +       +   +F+     
Sbjct: 57  CSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSA 116

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            + G         +   F++          + P  T  G+  I
Sbjct: 117 KARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHII 159


>gi|194213203|ref|XP_001493704.2| PREDICTED: similar to protein (peptidyl-prolyl cis/trans isomerase)
           NIMA-interacting 1 [Equus caballus]
          Length = 236

 Score = 57.0 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 25/103 (24%), Gaps = 1/103 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +       R   +         +  ++      ++ +       +   +F+     
Sbjct: 130 CSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSA 189

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            + G         +   F++          + P  T  G+  I
Sbjct: 190 KARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHII 232


>gi|149242227|pdb|2ITK|A Chain A, Human Pin1 Bound To D-Peptide
 gi|151567939|pdb|2Q5A|A Chain A, Human Pin1 Bound To L-Peptide
 gi|281500875|pdb|3KAB|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
           Inhibitors
 gi|281500880|pdb|3KAG|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
           Inhibitors
 gi|281500881|pdb|3KAH|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
           Inhibitors
 gi|281500882|pdb|3KAI|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
           Inhibitors
 gi|281500890|pdb|3KCE|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
           Inhibitors
 gi|310689927|pdb|3ODK|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
           By Structure-Guided Fragment Evolution
 gi|317455036|pdb|2XP3|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
           By Structure-Guided Fragment Evolution
 gi|317455037|pdb|2XP4|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
           By Structure-Guided Fragment Evolution
 gi|317455038|pdb|2XP5|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
           By Structure-Guided Fragment Evolution
 gi|317455040|pdb|2XP7|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
           By Structure-Guided Fragment Evolution
 gi|317455041|pdb|2XP8|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
           By Structure-Guided Fragment Evolution
 gi|317455042|pdb|2XP9|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
           By Structure-Guided Fragment Evolution
 gi|317455043|pdb|2XPA|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
           By Structure-Guided Fragment Evolution
 gi|317455044|pdb|2XPB|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
           By Structure-Guided Fragment Evolution
          Length = 167

 Score = 57.0 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 25/103 (24%), Gaps = 1/103 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +       R   +         +  ++      ++ +       +   +F+     
Sbjct: 61  CSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSA 120

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            + G         +   F++          + P  T  G+  I
Sbjct: 121 KARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHII 163


>gi|118089325|ref|XP_420136.2| PREDICTED: similar to Protein (peptidyl-prolyl cis/trans isomerase)
           NIMA-interacting, 4 (parvulin) [Gallus gallus]
          Length = 125

 Score = 57.0 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 23/83 (27%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------LLKKS 253
           R  +A E      +      +++        G   ++    +   FQ             
Sbjct: 44  RAMEAMEKLKAGVRFSEVASQYSED-KARQGGDLGWMTRGSMVGPFQEAAFALPVSSMDK 102

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
              T  P  T+ G   I +  ++
Sbjct: 103 PVYTDPPVKTKFGYHIIMVEGRK 125


>gi|114675259|ref|XP_001161914.1| PREDICTED: similar to Chain B, Structural Basis For The
           Phosphoserine-Proline Recognition By Group Iv Ww Domains
           isoform 1 [Pan troglodytes]
 gi|119604464|gb|EAW84058.1| protein (peptidylprolyl cis/trans isomerase) NIMA-interacting 1,
           isoform CRA_b [Homo sapiens]
          Length = 174

 Score = 57.0 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 25/103 (24%), Gaps = 1/103 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +       R   +         +  ++      ++ +       +   +F+     
Sbjct: 57  CSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSA 116

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            + G         +   F++          + P  T  G+  I
Sbjct: 117 KARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHII 159


>gi|10120798|pdb|1F8A|B Chain B, Structural Basis For The Phosphoserine-Proline Recognition
           By Group Iv Ww Domains
          Length = 167

 Score = 57.0 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 25/103 (24%), Gaps = 1/103 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +       R   +         +  ++      ++ +       +   +F+     
Sbjct: 61  CSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSA 120

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            + G         +   F++          + P  T  G+  I
Sbjct: 121 KARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHII 163


>gi|281500876|pdb|3KAC|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
           Inhibitors
 gi|281500877|pdb|3KAC|B Chain B, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
           Inhibitors
          Length = 123

 Score = 57.0 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 25/103 (24%), Gaps = 1/103 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +       R   +         +  ++      ++ +       +   +F+     
Sbjct: 17  CSHLLVKHSQSRRPSSWRQEQITRTQEEALELINGYIQKIKSGEEDFESLASQFSDCSSA 76

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            + G         +   F++          + P  T  G+  I
Sbjct: 77  KARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHII 119


>gi|253700225|ref|YP_003021414.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
 gi|251775075|gb|ACT17656.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
          Length = 93

 Score = 57.0 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 8/80 (10%), Positives = 20/80 (25%), Gaps = 1/80 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             ++     +          +   + +        G+        +  +F + +      
Sbjct: 12  ATEQECVALKTKIEAGADFGDCARENSLCPSGNQGGRLGEFRPGQMVREFDEVVFSGEVG 71

Query: 256 NTTNPYVTQKGVEYIAICDK 275
               P  TQ G   I I  +
Sbjct: 72  KVLGPVKTQFGYHLIEIMSR 91


>gi|146416499|ref|XP_001484219.1| hypothetical protein PGUG_03600 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 175

 Score = 57.0 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/162 (8%), Positives = 38/162 (23%), Gaps = 5/162 (3%)

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
             T       +    +             + +      +  F       + +I  +   +
Sbjct: 15  SRTHNKEYFLNQATRELSWEPPFGTDKSKLDAYISQYKERGFKP-VVPSDGKIRTSHFLV 73

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS 230
           K+   R          I   + +     +K     ++      K     E  +       
Sbjct: 74  KHKDSRRPRSWKSPDGISLTRDEAIAIAKK---YRQQIVNGDKKLSELAEHESDCSSHSQ 130

Query: 231 IGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIA 271
            G   +  +  + P F+           ++   +  G+  I 
Sbjct: 131 GGDLGFFGKGQMQPSFEEAAFGLHVGEISDLVESDSGIHIIQ 172


>gi|61228635|sp|P0A3Y9|NIFM_KLEPN RecName: Full=Protein nifM
 gi|61228636|sp|P0A3Z0|NIFM_KLEOX RecName: Full=Protein nifM
 gi|43835|emb|CAA31679.1| unnamed protein product [Klebsiella pneumoniae]
 gi|43886|emb|CAA29313.1| nifM (AA 1-266) [Klebsiella pneumoniae]
 gi|149250|gb|AAA25105.1| nifM [Klebsiella pneumoniae]
 gi|225920|prf||1403297C nifM gene
          Length = 266

 Score = 57.0 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/166 (7%), Positives = 48/166 (28%), Gaps = 3/166 (1%)

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
           ++   D   +    ++                   R     +       +   Q+ +   
Sbjct: 92  ELAFADIARQAPQPDLSTVQAWYLRHQTQFMRPEQRLTRHLLLTVDNDREAVHQRILGLY 151

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQ 264
            +            ++ +     +  G+  ++    L+PQ +  L   ++N  + P  ++
Sbjct: 152 RQINASRDAFAPLAQRHSHCPSALEEGRLGWISRGLLYPQLETALFSLAENALSLPIASE 211

Query: 265 KGVEYIAICDKRDLGGEIALK--AYLSAQNTPTKIEKHEAEYVKKL 308
            G   +     R        +              ++H+ ++++++
Sbjct: 212 LGWHLLWCEAIRPAAPMEPQQALESARDYLWQQSQQRHQRQWLEQM 257


>gi|242023877|ref|XP_002432357.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting, putative
           [Pediculus humanus corporis]
 gi|212517780|gb|EEB19619.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting, putative
           [Pediculus humanus corporis]
          Length = 160

 Score = 57.0 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 11/104 (10%), Positives = 25/104 (24%), Gaps = 1/104 (0%)

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
           Q    +   E   R   +            ++      E+            ++++    
Sbjct: 53  QCSHLLVKHENSRRPSSWREEKITRSKSEALELLKSYREQIVSGAASFAELAQQYSDCSS 112

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
               G      +  +   F+ +         + P  T  GV  I
Sbjct: 113 AKRGGDLGPFGKGAMQKPFEQVAFALKVGELSEPVDTDSGVHII 156


>gi|169335547|ref|ZP_02862740.1| hypothetical protein ANASTE_01962 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258285|gb|EDS72251.1| hypothetical protein ANASTE_01962 [Anaerofustis stercorihominis DSM
           17244]
          Length = 504

 Score = 57.0 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/261 (7%), Positives = 68/261 (26%), Gaps = 12/261 (4%)

Query: 53  DGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
             +  ++    K Q++      +  ++       K+   K      ++         +  
Sbjct: 218 SSESEQKTDEQKQQELKESTVAMVKEKAAFYAAGKEAKTKIDTKKVNSKKAENESLSSMF 277

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
              +     +         +   +++A   ++ + ++          +       +  K 
Sbjct: 278 GSDTLTSVYNAYGLTKKQYDEAGKWIATADLYKEALEEKVTYDKPTEKDAEKEFNKNTKA 337

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
                   + +L S      +      ++  D ++   +  K+    E            
Sbjct: 338 YDKSTVSAKHILTSDKSLAKEIYEQATQKGADFDQIMSKYQKNSAVQEAS---------- 387

Query: 233 KAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG-EIALKAYLSA 290
                    +   F +      + +   P  T+ G   I + DK  +       K  + +
Sbjct: 388 DLGAFTYPSMVEDFSKAAFDAEKGSVVGPVKTEYGYHVIYVYDKNTVEPKFEDSKDTILS 447

Query: 291 QNTPTKIEKHEAEYVKKLRSN 311
           +       +   +  + ++  
Sbjct: 448 KLDSQNKLEAVNKLDEDIKDK 468


>gi|109131190|ref|XP_001092957.1| PREDICTED: hypothetical protein LOC699273 isoform 2 [Macaca
           mulatta]
          Length = 164

 Score = 57.0 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------LLKKS 253
           +I +A E      +      +++        G   ++    +   FQ             
Sbjct: 83  KIMEAMEKLKSGMRFNEVASQYSED-KARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDK 141

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
              T  P  T+ G   I +  ++
Sbjct: 142 PVFTDPPVKTKFGYHIIMVEGRK 164


>gi|61358821|gb|AAX41625.1| protein NIMA-interacting 1 [synthetic construct]
          Length = 163

 Score = 57.0 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 25/103 (24%), Gaps = 1/103 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +       R   +         +  ++      ++ +       +   +F+     
Sbjct: 57  CSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSA 116

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            + G         +   F++          + P  T  G+  I
Sbjct: 117 KARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHII 159


>gi|22597180|gb|AAN03477.1| prolyl isomerase Ess1 [Cryptococcus neoformans var. neoformans]
          Length = 178

 Score = 57.0 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 9/92 (9%), Positives = 22/92 (23%), Gaps = 1/92 (1%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
            R V  +I  ++ Q           +        +        +        G   +   
Sbjct: 83  WRNVRITITSDEAQAIIEQHIAYLQSLPPADLPKEFAKIASTESDCSSARKGGDLGWFGR 142

Query: 240 SDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYI 270
             +   F++    +     +    T  G+  I
Sbjct: 143 GQMQKPFEDATFNTPVGQLSGIVKTDSGIHVI 174


>gi|256599529|pdb|2ZQV|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
           Cis-Trans Isomerase
          Length = 163

 Score = 57.0 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 25/103 (24%), Gaps = 1/103 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +       R   +         +  ++      ++ +       +   +F+     
Sbjct: 57  CSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSA 116

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            + G         +   F++          + P  T  G+  I
Sbjct: 117 KARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHII 159


>gi|145347174|ref|XP_001418050.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578278|gb|ABO96343.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 106

 Score = 57.0 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/96 (11%), Positives = 27/96 (28%), Gaps = 1/96 (1%)

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             +  ++ + +    +   D         K     E+ ++       G+        +  
Sbjct: 10  HVLVKDRARAEALKAEIEADVAGGAPLRAKFARVAEQHSTCPSAKKGGELGAFKPGQMVK 69

Query: 245 QF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
           +F   +          P  TQ G   I + D+ +  
Sbjct: 70  EFDAVVFSGEIGAVLGPVDTQFGSHLILVTDREEAK 105


>gi|281421755|ref|ZP_06252754.1| chaperone SurA [Prevotella copri DSM 18205]
 gi|281404250|gb|EFB34930.1| chaperone SurA [Prevotella copri DSM 18205]
          Length = 328

 Score = 57.0 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 54/154 (35%), Gaps = 5/154 (3%)

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
           +        ++       ++   +L        + Q  V++RI    ++  +     +  
Sbjct: 89  KRYDDVEPCELMPDKGSVHVAHILLRLGQKASYREQEVVERRIDSIYQALCKGADFADLA 148

Query: 220 EKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD 277
           +K +      V+ G   +  +      F+ +     +   + P++++ G   + + DK D
Sbjct: 149 KKCSDDKGSAVNGGTLAWFTKGQTVQAFEKVAFSLRKGEISRPFMSEFGYHIVKLLDKHD 208

Query: 278 LGGEIALKAYLSAQNTP---TKIEKHEAEYVKKL 308
            G +    A    +N      + E+ E   + ++
Sbjct: 209 DGNQKKYVADAKVENWRGTYQQQEEVENLLLNEI 242


>gi|309806668|ref|ZP_07700664.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners
           LactinV 03V1-b]
 gi|312870840|ref|ZP_07730945.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LEAF
           3008A-a]
 gi|308166973|gb|EFO69156.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners
           LactinV 03V1-b]
 gi|311093530|gb|EFQ51869.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LEAF
           3008A-a]
          Length = 297

 Score = 57.0 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/294 (11%), Positives = 78/294 (26%), Gaps = 41/294 (13%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
           F K L T  ++  F  V + +       S+      G  IT  D   ++           
Sbjct: 3   FKKSLKTLLLIAAFSGVALTATGC----SKTVANYKGGKITQEDFYNKVK-------KSP 51

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
             +  +  +I+    +Q+          NT              + + + +  +     +
Sbjct: 52  AGQAILANMIINRTLQQQYGSQVSKKKVNTAYD----------NARKQYGARFEMVLQQN 101

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
               +          +++          + +              +  ++ +L       
Sbjct: 102 GMTPEAYKESIQTNLLLQAALKDIKPITKAQEKKAW----KEYQPKVRVQHIL------- 150

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESD---LHPQFQ 247
                  +   K   E   +     +  +K+++      + GK +    SD        +
Sbjct: 151 ----VEKEDTAKKVIEELGKGASFKDLAKKYSTDTGTSKNAGKIEPFDSSDTTLDADFKE 206

Query: 248 NLLKKSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH 300
              K      T  P  TQ G   I +      G   + K+ + A+      +  
Sbjct: 207 AAFKLKTGEYTKKPVKTQFGYHIIKMIKHPSKGSFQSHKSEIIARIYQKMAQDQ 260


>gi|17537235|ref|NP_496824.1| hypothetical protein Y48C3A.16 [Caenorhabditis elegans]
 gi|5832912|emb|CAB55116.1| C. elegans protein Y48C3A.16, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 126

 Score = 57.0 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             Q +  +A E      K      +++      S G   ++    +   FQ+      N+
Sbjct: 41  EKQGKALEAIEKLKSGMKFNEVAAQYSED-KARSGGDLGWMTRGSMVGPFQDAAFALSNS 99

Query: 257 -------TTNPYVTQKGVEYIAICDKR 276
                  T  P  T+ G   I +  K+
Sbjct: 100 SCDKPIYTDPPVKTKFGYHVIMVEGKK 126


>gi|254284437|ref|ZP_04959405.1| PPIC-type PPIASE domain protein [gamma proteobacterium NOR51-B]
 gi|219680640|gb|EED36989.1| PPIC-type PPIASE domain protein [gamma proteobacterium NOR51-B]
          Length = 294

 Score = 57.0 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/284 (7%), Positives = 73/284 (25%), Gaps = 31/284 (10%)

Query: 26  CIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETL 85
            ++ I++  + A  +       G  + + +I        L      L +  V+       
Sbjct: 8   FLLLIMAMSASADEAAPVFNAGGVTVKESEI-----RYLLGNTAEALRERIVES------ 56

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
                       +        +   R   ++         K      +    +       
Sbjct: 57  ----------PEERQAFIEKLLAQKRLAEMADNVVGEVGSKDYWELQYDLIRVRQAFTIA 106

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
              +   +     +  E    ++    +   +  +  +L         ++   + ++KD 
Sbjct: 107 KFKEGLTVPDMSVIAREEYMARKNDIAVVPEKRKVAHILL--TCEPGCDREAKKAQLKDF 164

Query: 206 EESRLRLPKDCNKLEKFASK-IHDVSIGKAQY---LLESDLHPQFQNLLK--KSQNNTTN 259
             S     K  +  ++++       + G+        + ++   F+      ++  + + 
Sbjct: 165 SASIAEGAKFADLAKQYSEDFASARNGGRLGTAIAKDDGNIAFAFRKASFALENPGDLSP 224

Query: 260 PYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHE 301
           P  T  G   I + +           L+  +          +  
Sbjct: 225 PVETLFGYHLIVLEEIEPSYTVPFERLRDQIVQLLEREWTNEQV 268


>gi|242001848|ref|XP_002435567.1| rotamase, putative [Ixodes scapularis]
 gi|215498903|gb|EEC08397.1| rotamase, putative [Ixodes scapularis]
          Length = 132

 Score = 57.0 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             Q ++ +A E      K       ++        G   ++    +   FQ+       +
Sbjct: 47  EKQSKVLEALEKIKGGMKFNEAAATYSED-KARQGGDLGWMTRGSMVGPFQDAAFALPIS 105

Query: 257 TT-------NPYVTQKGVEYIAICDKR 276
           T         P  T+ G   I +  K+
Sbjct: 106 TLANPVYTDPPVKTKFGYHIIMVEGKK 132


>gi|256599528|pdb|2ZQU|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
           Cis-Trans Isomerase
          Length = 163

 Score = 57.0 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 25/103 (24%), Gaps = 1/103 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +       R   +         +  ++      ++ +       +   +F+     
Sbjct: 57  CSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSA 116

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            + G         +   F++          + P  T  G+  I
Sbjct: 117 KARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHII 159


>gi|317009325|gb|ADU79905.1| hypothetical protein HPIN_03345 [Helicobacter pylori India7]
          Length = 411

 Score = 57.0 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 80/272 (29%), Gaps = 31/272 (11%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           +NG  IT   I +       Q+ +   +  A   LI E +K QEIE+  I  D + ++  
Sbjct: 163 VNGSPITLYQIQEE------QEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQE 216

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
               A+  G+  + F   L  +G     ++  L       ++++N  +        E   
Sbjct: 217 MAMMAQQQGMDLDHFKQMLMAEGHYKL-YRDQLKEHLEMQELLRNILLTNVDTSS-ETKM 274

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
            +   K+                    ++                +  +           
Sbjct: 275 REYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMSNPNLEVPGVSKANEKIE-------- 326

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY---IAICDKRDLGGEI 282
                       +++      Q  +   Q + T       G      I     ++     
Sbjct: 327 ------------MKTLNPQIAQVFISHEQGSFTPVMNGGGGQFITFYIKEKKGKNEVSFS 374

Query: 283 ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             K +++ +      +K   E+ +KLR  + I
Sbjct: 375 QAKQFIAQKLVEESKDKILEEHFEKLRVKSRI 406


>gi|114051057|ref|NP_001040140.1| peptidyl-prolyl cis-trans isomerase [Bombyx mori]
 gi|87248189|gb|ABD36147.1| peptidyl-prolyl cis-trans isomerase [Bombyx mori]
          Length = 135

 Score = 57.0 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK----- 251
             Q +  +A E      K  +    ++        G   ++    +   FQ+        
Sbjct: 50  EKQSKCLEALEKLKAGQKFPDVAAAYSED-KARQGGDLGWMTRGSMVGPFQDAAFALPIS 108

Query: 252 --KSQNNTTNPYVTQKGVEYIAICDKR 276
              +   T  P  T+ G   I +  K+
Sbjct: 109 SVTNPVYTNPPVKTKLGYHIIMVEGKK 135


>gi|125981737|ref|XP_001354872.1| GA14299 [Drosophila pseudoobscura pseudoobscura]
 gi|195167040|ref|XP_002024342.1| GL14862 [Drosophila persimilis]
 gi|54643184|gb|EAL31928.1| GA14299 [Drosophila pseudoobscura pseudoobscura]
 gi|194107715|gb|EDW29758.1| GL14862 [Drosophila persimilis]
 gi|225581071|gb|ACN94647.1| GA14299 [Drosophila miranda]
          Length = 163

 Score = 57.0 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/122 (9%), Positives = 29/122 (23%), Gaps = 1/122 (0%)

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
           +   K G+   + PA  Q +  +   +   R   +         +           +   
Sbjct: 39  EIAKKSGSNAADGPAEVQCLHLLVKHKGSRRPSSWREQHITRTKEEAQLLLEVYRNKIVQ 98

Query: 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEY 269
           +          ++        G         + P F+      +    +    T  G+  
Sbjct: 99  QETTFEELARSYSDCSSAKRGGDLGKFGRGQMQPPFEKAAFALNVGQLSGIVDTDSGLHI 158

Query: 270 IA 271
           I 
Sbjct: 159 IQ 160


>gi|332253263|ref|XP_003275765.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           1-like [Nomascus leucogenys]
          Length = 163

 Score = 57.0 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 25/103 (24%), Gaps = 1/103 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +       R   +         +  ++      ++ +       +   +F+     
Sbjct: 57  CSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSA 116

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            + G         +   F++          + P  T  G+  I
Sbjct: 117 KARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHII 159


>gi|225436662|ref|XP_002276538.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296083867|emb|CBI24255.3| unnamed protein product [Vitis vinifera]
          Length = 296

 Score = 57.0 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 8/73 (10%), Positives = 26/73 (35%)

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAIC 273
              +   +++        G   ++ +  + P+F+    K+  N      T+ G   + + 
Sbjct: 118 DLSDLAVEYSICPSKEEGGMLGWVRKGQMVPEFEEAAFKAPLNKVVRCKTKFGWHLLQVI 177

Query: 274 DKRDLGGEIALKA 286
            +R+      ++ 
Sbjct: 178 SEREESLLQDIQP 190


>gi|77736211|ref|NP_001029804.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Bos taurus]
 gi|75060706|sp|Q5BIN5|PIN1_BOVIN RecName: Full=Peptidyl-prolyl cis-trans isomerase NIMA-interacting
           1; AltName: Full=Peptidyl-prolyl cis-trans isomerase
           Pin1; Short=PPIase Pin1; AltName: Full=Rotamase Pin1
 gi|60650278|gb|AAX31371.1| protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1
           [Bos taurus]
 gi|86827588|gb|AAI12584.1| Peptidylprolyl cis/trans isomerase, NIMA-interacting 1 [Bos taurus]
 gi|296485898|gb|DAA28013.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Bos taurus]
          Length = 163

 Score = 57.0 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 25/103 (24%), Gaps = 1/103 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +       R   +         +  ++      ++ +       +   +F+     
Sbjct: 57  CSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSA 116

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            + G         +   F++          + P  T  G+  I
Sbjct: 117 KARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHII 159


>gi|300985812|ref|ZP_07177604.1| PPIC-type PPIASE domain protein [Escherichia coli MS 45-1]
 gi|300407963|gb|EFJ91501.1| PPIC-type PPIASE domain protein [Escherichia coli MS 45-1]
          Length = 93

 Score = 57.0 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 20/78 (25%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +K   D  E            +K +        G      +  + P F + +      
Sbjct: 13  KEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVL 72

Query: 256 NTTNPYVTQKGVEYIAIC 273
             T    TQ G   I + 
Sbjct: 73  EPTGSLHTQFGYHIIKVL 90


>gi|256599538|pdb|2ZR5|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
           Cis-Trans Isomerase
          Length = 163

 Score = 57.0 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 8/91 (8%), Positives = 24/91 (26%), Gaps = 1/91 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R   +         +  ++      ++ +       +   +F+      + G        
Sbjct: 69  RPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRG 128

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            +   F++          + P  T  G+  I
Sbjct: 129 QMQKPFEDASFALRTGEMSGPVFTDSGIHII 159


>gi|147815086|emb|CAN74567.1| hypothetical protein VITISV_015712 [Vitis vinifera]
          Length = 241

 Score = 57.0 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 7/73 (9%), Positives = 25/73 (34%)

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAIC 273
              +   +++        G   ++ +  + P+F+     +  N      T+ G   + + 
Sbjct: 118 DLSDLAVEYSICPSKEEGGMLGWVRKGQMVPEFEEAAFXAPLNKVVRCKTKFGWHLLQVI 177

Query: 274 DKRDLGGEIALKA 286
            +R+      ++ 
Sbjct: 178 SEREESLLQDIQP 190


>gi|256599539|pdb|2ZR6|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
           Cis-Trans Isomerase
          Length = 163

 Score = 57.0 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 25/103 (24%), Gaps = 1/103 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +       R   +         +  ++      ++ +       +   +F+     
Sbjct: 57  CSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSA 116

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            + G         +   F++          + P  T  G+  I
Sbjct: 117 KARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHII 159


>gi|150025240|ref|YP_001296066.1| peptidyl-prolyl cis-trans isomerase precursor [Flavobacterium
           psychrophilum JIP02/86]
 gi|149771781|emb|CAL43255.1| Probable peptidyl-prolyl cis-trans isomerase precursor
           [Flavobacterium psychrophilum JIP02/86]
          Length = 658

 Score = 57.0 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/124 (12%), Positives = 34/124 (27%), Gaps = 5/124 (4%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQF---QNLLK 251
              +  I+D      +     +   +F+         G         L  +         
Sbjct: 253 EKAKATIQDIYTKLKQGENFESLASQFSQDKNSAPKGGLLPRFASGQLSSEEFENAAFAL 312

Query: 252 KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNT-PTKIEKHEAEYVKKLRS 310
              N  + P+ +Q G   + + +K+ +     ++  L  +     +          KLR 
Sbjct: 313 TKPNEYSAPFESQFGWHIVKLVEKQPIKKLNEMEKELDEKIRKDDRSRLITNSLTNKLRK 372

Query: 311 NAII 314
              I
Sbjct: 373 KYTI 376



 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 62/240 (25%), Gaps = 12/240 (5%)

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I +     +        + + V     +           +   ++K         +    
Sbjct: 31  IDDKPYYTDEFSRVYNKNIDLVKDESQKDLNKYMELFVGYKLKINKANKIGLQNNEKYIN 90

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           +        +       + ++     ++              ++    +    +      
Sbjct: 91  ELKSYRTQLSK--NYTSDTKVTKALIEEGYNRSLKEIRASHILITVDENAVPADTLKAYN 148

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYLLESDLHPQFQNL-LKKSQNNTT 258
           +  D  +  L   K  +    F+       + G   Y     +   F+ +     +   +
Sbjct: 149 QAIDIRKKALVGEKFEDLAVTFSQDPSSKENKGDLGYFSAFRMIYPFETVAYNTKKGQIS 208

Query: 259 NPYVTQKGVEYIAICDKRDLGGEIALKAYL--------SAQNTPTKIEKHEAEYVKKLRS 310
            P  T+ G   I I D R+  GEI +   +        S   T  K +    +   KL+ 
Sbjct: 209 MPVRTKFGYHLIYITDSRENRGEITVAHIMILKSPKAESEITTTEKAKATIQDIYTKLKQ 268


>gi|119503317|ref|ZP_01625401.1| peptidyl-prolyl cis-trans isomerase D [marine gamma proteobacterium
           HTCC2080]
 gi|119460963|gb|EAW42054.1| peptidyl-prolyl cis-trans isomerase D [marine gamma proteobacterium
           HTCC2080]
          Length = 624

 Score = 57.0 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 54/166 (32%), Gaps = 6/166 (3%)

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
           ++DF+     + ++   +  + +     + LI  +L        ++     +R+ DA   
Sbjct: 237 RDDFLAPVDQVALQEQFDSIQDEYTVAEQTLIAHILLIQ--GDDESVEAYTRRVDDAASR 294

Query: 209 RLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKG 266
                   +   + +  +      G+  +   +      ++ +   +    +    T  G
Sbjct: 295 IAADEDFADLAAELSDDVGSAALGGELGFTDGTVFPEAMESAVNSLAVGEVSAGVKTDAG 354

Query: 267 VEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
             +I I ++   +      LK  L       + ++     V +LR 
Sbjct: 355 THFIRILERVAGETPDYEQLKNELEKSMQEAEADQTLLVTVDELRE 400



 Score = 51.6 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 45/154 (29%), Gaps = 14/154 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +     +    +  + +++ F    +      +  +     +NG  IT  ++   I
Sbjct: 1   MMQSIRAGTQNTGFKILIFLIILSFAGFGLEQVIFGSSGTS-VAEVNGTEITPQELQVAI 59

Query: 61  ALLKLQKIN-------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
              K Q +                +   A++ELI  TL  Q   ++ +   S  +     
Sbjct: 60  EGQKRQLMQIFGDNIDPEMLDDDRIRPRALEELIERTLLLQAATENAMVASSRAIGEIVG 119

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
                    A D   +           +++   Q
Sbjct: 120 SIDVFKVDGAFDADQYKVVLANAGYTPERFRREQ 153


>gi|319401108|gb|EFV89327.1| PPIC-type PPIASE domain protein [Staphylococcus epidermidis FRI909]
          Length = 326

 Score = 57.0 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/309 (12%), Positives = 94/309 (30%), Gaps = 27/309 (8%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +KL+    V +    + + +  S A  S+     +  +I+      ++A +  +    ++
Sbjct: 1   MKLMNKIIVPVTASALLLGACGSNATESK-----DNTLISSKAGDVKVADVMKKMGKEQI 55

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
              +   ++ + L     +K     D+  ++    +  +  G   +  S    +      
Sbjct: 56  ANTSFSIVLNKIL----ADKYKDKVDTKDIDKDIKKEEKQYGGKDQFESMLKQQ-----G 106

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                   Q       K   + K    + EI        +      LI+    S     L
Sbjct: 107 MSLDDYKEQKKLSAYQKQLLLDKVNVSDKEIK-----ENSKKASHILIKVKSKSSDKEGL 161

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNL-L 250
            ++   +K  K  +E      K     +K +         G   Y+++  +   F+    
Sbjct: 162 SDKKAKEKAEKIQKEVEKNPNKFREIAKKESMDSSSAKKDGSLGYVIKGQMVDSFEKALF 221

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH---EAEYVKK 307
           K  +   +    T  G   I            + K+ +  +    K++K      +  K+
Sbjct: 222 KLKEGEVSKVVKTDYGYHIIKAD---KETDFNSEKSNIKQKLIEEKVQKKPKLLTDAYKE 278

Query: 308 LRSNAIIHY 316
           L     + Y
Sbjct: 279 LLKEYKVDY 287


>gi|291407685|ref|XP_002720151.1| PREDICTED: protein (peptidyl-prolyl cis/trans isomerase)
           NIMA-interacting, 4 (parvulin)-like [Oryctolagus
           cuniculus]
          Length = 131

 Score = 57.0 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------LLKKS 253
           +I +A E      K      +++        G   ++    +   FQ             
Sbjct: 50  KIMEAMEKLKSGMKFSEVAAQYSED-KARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDK 108

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
              T  P  T+ G   I +  ++
Sbjct: 109 PVFTDPPVKTKFGYHIIMVEGRK 131


>gi|123476934|ref|XP_001321637.1| PPIC-type PPIASE domain containing protein [Trichomonas vaginalis
           G3]
 gi|121904467|gb|EAY09414.1| PPIC-type PPIASE domain containing protein [Trichomonas vaginalis
           G3]
          Length = 154

 Score = 57.0 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/133 (9%), Positives = 32/133 (24%), Gaps = 11/133 (8%)

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ----------GFV 198
           +  +     N    I          T     +  VL  +  +                  
Sbjct: 18  QVYYYNSVTNESTWIRPVPFPGDKNTAEWPPMVYVLHILIKHNQSEHPNPALKRTREEAQ 77

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS-QNNT 257
               +  +       K  +  +  +        G   ++    + P+F+ +         
Sbjct: 78  NIINEIHQILLTDNKKFESIAKDRSDCESAKFNGVLGWIARKKMPPEFEKVAWGLGIGQI 137

Query: 258 TNPYVTQKGVEYI 270
           + P+ T +G   +
Sbjct: 138 SKPFETVEGFHIV 150


>gi|30584149|gb|AAP36323.1| Homo sapiens protein (peptidyl-prolyl cis/trans isomerase)
           NIMA-interacting, 4 (parvulin) [synthetic construct]
          Length = 132

 Score = 56.6 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------LLKKS 253
           +I +A E      +      +++        G   ++    +   FQ             
Sbjct: 50  KIMEAMEKLKSGMRFNEVAAQYSED-KARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDK 108

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
              T  P  T+ G   I +  ++
Sbjct: 109 PVFTDPPVKTKFGYHIIMVEGRK 131


>gi|24373397|ref|NP_717440.1| peptidyl-prolyl cis-trans isomerase C [Shewanella oneidensis MR-1]
 gi|24347669|gb|AAN54884.1|AE015627_2 peptidyl-prolyl cis-trans isomerase C [Shewanella oneidensis MR-1]
          Length = 92

 Score = 56.6 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 9/78 (11%), Positives = 24/78 (30%), Gaps = 1/78 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           + + +  ++  L            +S       G+        +  +F  ++  +  N  
Sbjct: 14  EDQCQALKQQILDGADFAQIARAHSSCPSGAQGGELGSFGPGMMVREFDEVVFSAPLNVV 73

Query: 259 -NPYVTQKGVEYIAICDK 275
             P  TQ G   + +  +
Sbjct: 74  QGPVKTQFGYHLLEVTSR 91


>gi|301058980|ref|ZP_07199949.1| tetratricopeptide repeat protein [delta proteobacterium NaphS2]
 gi|300446976|gb|EFK10772.1| tetratricopeptide repeat protein [delta proteobacterium NaphS2]
          Length = 824

 Score = 56.6 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/159 (9%), Positives = 41/159 (25%), Gaps = 4/159 (2%)

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             + +  I+                N + E+ +          +   +        ++++
Sbjct: 658 QERLWADIERRLQSYRSKRAFCSPRNPKTEVESTHLSKLKTEEKNRHLWHGSGKKSESRV 717

Query: 193 QNQGFVQKRIKDAEESRLRLPK---DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
           +      K    A+E    L         + +++        G   Y+   D+    + +
Sbjct: 718 RISIISVKEQPIAQEILRELKAGGNFSELVRRYSIGPGAEHGGDIGYIAPGDMVEDLRAV 777

Query: 250 LKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY 287
                    +    T  G   I   D+R     +  +  
Sbjct: 778 AMNLKVGQYSGTVETGNGYFIIMKTDERSSPQTLPEETQ 816


>gi|114564788|ref|YP_752302.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           frigidimarina NCIMB 400]
 gi|114336081|gb|ABI73463.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           frigidimarina NCIMB 400]
          Length = 92

 Score = 56.6 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 20/72 (27%), Gaps = 4/72 (5%)

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP--Y 261
           D  +      K     +K +S     S G      +  + P F  +          P   
Sbjct: 20  DIIKQLNNGAKFDVLAKKHSSCPSAKSGGNLGEFKKGQMVPPFDKV--CFNGELITPHLV 77

Query: 262 VTQKGVEYIAIC 273
            T+ G   + + 
Sbjct: 78  KTKFGWHVVKVL 89


>gi|299822144|ref|ZP_07054030.1| peptidyl-prolyl cis-trans isomerase [Listeria grayi DSM 20601]
 gi|299815673|gb|EFI82911.1| peptidyl-prolyl cis-trans isomerase [Listeria grayi DSM 20601]
          Length = 287

 Score = 56.6 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/256 (7%), Positives = 66/256 (25%), Gaps = 20/256 (7%)

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                   +      L  +  ++     +      +       +  +    +   +    
Sbjct: 29  KSDQGDVTKDELYDALKDKDGEQVLQLLTFNKILDDKYKVSDKEVDKKYNAAKAQYGDQF 88

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
                  N  ++   +      + +          + ++    +  +      +++    
Sbjct: 89  ASALQQANLTEKMYKLSLKNELLRQKATKAYIKVTDKKLQDYYKTWQPKITVSHIL---- 144

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLH 243
                         +K     E+      K  +  +K+++        GK        + 
Sbjct: 145 -----------VADKKTADKVEQELKDGKKFADLAKKYSTDTASKTKGGKLDAFGTGQMD 193

Query: 244 PQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--K 299
           P F+      K + + + P  +Q G   I + +          KA +      +++   +
Sbjct: 194 PAFEKAAYALKEKGDISKPVKSQFGYHVIQLDEPAKKATFEKDKAQVKKDYIDSQMNNAE 253

Query: 300 HEAEYVKKLRSNAIIH 315
                +KK   +A + 
Sbjct: 254 VVQAALKKEFKDANVK 269


>gi|225575736|ref|ZP_03784346.1| hypothetical protein RUMHYD_03829 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037049|gb|EEG47295.1| hypothetical protein RUMHYD_03829 [Blautia hydrogenotrophica DSM
           10507]
          Length = 419

 Score = 56.6 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/335 (10%), Positives = 86/335 (25%), Gaps = 41/335 (12%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN------- 69
                L     +  ++        +   T++ E I+ G +S      + Q          
Sbjct: 44  IIVAALTGAIALSGLAGCGQLDGGKTVATVDKEEISMGVLSFMTRYQQAQTAQMYMSMLG 103

Query: 70  --------------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
                                 L   A+++L    L K   ++  +T             
Sbjct: 104 SDPSSMWDQVEDEKKGTTYGDSLRDDALEQLEEMCLLKIHADEYEVTVTKEEQEKIQRAA 163

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM-------- 161
            +    ++E+  S L         F +         + +K D  +   + E         
Sbjct: 164 KQFMEDNSEEVKSELVVSQKDVERFLELTTYYQKMQEPIKADADMNVTDEEAAQTTVTYT 223

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           ++     +      +E   +    +    +      +     D +     + +D + L +
Sbjct: 224 KVDPPDTEATTDEEKEDSGQEEKDAKTKAQEILDQVLATEDADMDAIAKSVDEDLSALSE 283

Query: 222 FASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN--TTNPYVTQKGVEYIAICDKRDLG 279
             S                +L    +  +K  Q+    ++          + +    D  
Sbjct: 284 SFSTNEAEEEEDETDTSTGNLPDAVKEAVKGLQDGEVVSSLIQDGDSYYVVRLDSAFDQE 343

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                K  +       + ++   + V++ R  A I
Sbjct: 344 ATENQKDSI----ISERKQELYDDTVEEWRDKADI 374


>gi|5453898|ref|NP_006212.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Homo
           sapiens]
 gi|114675261|ref|XP_001161990.1| PREDICTED: hypothetical protein LOC745021 isoform 2 [Pan
           troglodytes]
 gi|296232839|ref|XP_002761760.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           1-like isoform 1 [Callithrix jacchus]
 gi|297703517|ref|XP_002828684.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           1-like [Pongo abelii]
 gi|3024406|sp|Q13526|PIN1_HUMAN RecName: Full=Peptidyl-prolyl cis-trans isomerase NIMA-interacting
           1; AltName: Full=Peptidyl-prolyl cis-trans isomerase
           Pin1; Short=PPIase Pin1; AltName: Full=Rotamase Pin1
 gi|3891861|pdb|1PIN|A Chain A, Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo Sapiens
 gi|34810641|pdb|1NMV|A Chain A, Solution Structure Of Human Pin1
 gi|1332710|gb|AAC50492.1| Pin1 [Homo sapiens]
 gi|12804093|gb|AAH02899.1| Peptidylprolyl cis/trans isomerase, NIMA-interacting 1 [Homo
           sapiens]
 gi|47115245|emb|CAG28582.1| UBL5 [Homo sapiens]
 gi|54695532|gb|AAV38138.1| protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1
           [Homo sapiens]
 gi|61358816|gb|AAX41624.1| protein NIMA-interacting 1 [synthetic construct]
 gi|119604463|gb|EAW84057.1| protein (peptidylprolyl cis/trans isomerase) NIMA-interacting 1,
           isoform CRA_a [Homo sapiens]
 gi|123990187|gb|ABM83904.1| protein (peptidylprolyl cis/trans isomerase) NIMA-interacting 1
           [synthetic construct]
 gi|123999297|gb|ABM87225.1| protein (peptidylprolyl cis/trans isomerase) NIMA-interacting 1
           [synthetic construct]
 gi|158255584|dbj|BAF83763.1| unnamed protein product [Homo sapiens]
 gi|168279071|dbj|BAG11415.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [synthetic
           construct]
 gi|1589005|prf||2209428A peptidyl-Pro isomerase
          Length = 163

 Score = 56.6 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 25/103 (24%), Gaps = 1/103 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +       R   +         +  ++      ++ +       +   +F+     
Sbjct: 57  CSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSA 116

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            + G         +   F++          + P  T  G+  I
Sbjct: 117 KARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHII 159


>gi|325922613|ref|ZP_08184364.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas gardneri ATCC
           19865]
 gi|325546908|gb|EGD18011.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas gardneri ATCC
           19865]
          Length = 292

 Score = 56.6 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/191 (9%), Positives = 48/191 (25%), Gaps = 12/191 (6%)

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
           Q       +   A  +I    V+            ++ A      +      L    +  
Sbjct: 91  QDDPVVAARIRQATDAILAKAVQARTRENAHIDAAQVQAQFNAHPHDYDEVRLSHVFVAL 150

Query: 187 IPDNKLQ-----NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYLLES 240
            P    +     +      R +  +             ++ +         G+   +   
Sbjct: 151 QPQGDARRGTPLSDAQALARAQQLKRQLDSGTPFEEVAKRESDDGSTAAEGGELSSIFLR 210

Query: 241 DLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
           ++   F   ++       + P    +G   I + D R        +  +  Q      ++
Sbjct: 211 NVADVFAAPVQALGVGEVSAPVRGPEGYHLIRV-DARVPATLETARGQIEVQLR----DQ 265

Query: 300 HEAEYVKKLRS 310
                +++LR 
Sbjct: 266 AATAALERLRQ 276


>gi|153004697|ref|YP_001379022.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152028270|gb|ABS26038.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 584

 Score = 56.6 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 75/270 (27%), Gaps = 44/270 (16%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             T+  EVIT  D+ +  A+    +  G   K    +L+   +  + I         + +
Sbjct: 72  VATVADEVITVDDLRELAAITHQDRAEGMTGKADFTKLVERLVAVRTIVAEARAIGLDDL 131

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                  A N                            + I  D+V+            E
Sbjct: 132 EEVKKPIADN---------------------------KERIRFDLVRKHASKDVTVDPAE 164

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +     + +                           +   K    +     +     +K 
Sbjct: 165 VKRLYDEARRE---------------WRIRSVFFGQEAEAKKFTAALAAGGEFDALAKKA 209

Query: 223 ASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           A      S   +Q++  S++     + + K +    T P     G   + + +KR +  +
Sbjct: 210 AEDKVARSGEGSQWIRVSEIQVSVAKEVEKLAPGKATAPLKAGPGWTVVRLDEKRSVE-D 268

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            AL+A + +      + K    Y  KL+  
Sbjct: 269 EALRAKIESTVRGEAVAKALQAYYAKLKKQ 298



 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/327 (10%), Positives = 91/327 (27%), Gaps = 46/327 (14%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTING-EVITDGDISKRI 60
               +  L   +  + T  +  +    P   +++     R+   + G + +T G++++ +
Sbjct: 288 LQAYYAKLKKQLVRIDTKLLRAVSFDKPKGGFEALRKDRRVVARVEGAKPVTLGEVAESL 347

Query: 61  AL--------LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
           A          + Q    + ++ A+  L+ + L   E E+  +                 
Sbjct: 348 ARPLFHGVAPAQEQGKLDKQKQDALDALVSKRLVTIEAERLRLDDTPEAKRRA------- 400

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
                                         ++   +    + +    E E  A  +K K+
Sbjct: 401 -----------------------AEFETNLLFTTFIDRVVIPEVKVTEAEDRAAYEKRKD 437

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
                   R    +  D K   +     +     +            E+   ++      
Sbjct: 438 EFKYPAFYRLEGLAFQDAKNAQKALKSLQGGTDFKWLRSNSDGLVPEEEQVFRLDATQ-- 495

Query: 233 KAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSA 290
               +    +  +F+  L  +Q+       ++     + +             ++  +  
Sbjct: 496 ---TISARAMPEEFRKALAGAQDGDVRLVASKDQHYVVRVAQFTPESVRPFEEVRPEIHK 552

Query: 291 QNTPTKIEKHEAEYVKKLRSNAIIHYY 317
               T I +    +V+KLR    ++ Y
Sbjct: 553 DVFGTAIARALDGWVEKLRDAHEVNVY 579


>gi|297710312|ref|XP_002831846.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4-like isoform 1 [Pongo abelii]
 gi|332263759|ref|XP_003280920.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4-like isoform 1 [Nomascus leucogenys]
 gi|20139299|sp|Q9Y237|PIN4_HUMAN RecName: Full=Peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4; AltName: Full=Parvulin-14; Short=Par14; Short=hPar14;
           AltName: Full=Parvulin-17; Short=Par17; Short=hPar17;
           AltName: Full=Peptidyl-prolyl cis-trans isomerase Pin4;
           Short=PPIase Pin4; AltName: Full=Peptidyl-prolyl
           cis/trans isomerase EPVH; Short=hEPVH; AltName:
           Full=Rotamase Pin4
 gi|4689436|gb|AAD27893.1|AF143096_1 peptidyl-prolyl cis-trans isomerase EPVH [Homo sapiens]
 gi|5420453|dbj|BAA82320.1| parvulin [Homo sapiens]
 gi|57163115|emb|CAI39856.1| protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4
           (parvulin) [Homo sapiens]
          Length = 131

 Score = 56.6 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------LLKKS 253
           +I +A E      +      +++        G   ++    +   FQ             
Sbjct: 50  KIMEAMEKLKSGMRFNEVAAQYSED-KARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDK 108

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
              T  P  T+ G   I +  ++
Sbjct: 109 PVFTDPPVKTKFGYHIIMVEGRK 131


>gi|15597192|ref|NP_250686.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa
           PAO1]
 gi|107101424|ref|ZP_01365342.1| hypothetical protein PaerPA_01002464 [Pseudomonas aeruginosa PACS2]
 gi|116049947|ref|YP_791243.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218892046|ref|YP_002440913.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa
           LESB58]
 gi|254235079|ref|ZP_04928402.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa
           C3719]
 gi|254240433|ref|ZP_04933755.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa
           2192]
 gi|296389594|ref|ZP_06879069.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa
           PAb1]
 gi|313111192|ref|ZP_07797014.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa
           39016]
 gi|9947998|gb|AAG05384.1|AE004626_3 peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa
           PAO1]
 gi|115585168|gb|ABJ11183.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126167010|gb|EAZ52521.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa
           C3719]
 gi|126193811|gb|EAZ57874.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa
           2192]
 gi|218772272|emb|CAW28054.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa
           LESB58]
 gi|310883516|gb|EFQ42110.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa
           39016]
          Length = 92

 Score = 56.6 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 6/77 (7%), Positives = 20/77 (25%), Gaps = 1/77 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-N 255
             +      ++   +        +K ++       G    +    +     N + +    
Sbjct: 12  KTEAEAAQLKQRLAKGEDFATLAKKHSTCPSGKRGGDLGEVRPGQMVRSIDNAIFRKPVG 71

Query: 256 NTTNPYVTQKGVEYIAI 272
               P  +Q G   + +
Sbjct: 72  VLQGPLKSQFGYHLLEV 88


>gi|327292088|ref|XP_003230752.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4-like, partial [Anolis carolinensis]
          Length = 116

 Score = 56.6 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 24/87 (27%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------L 249
             Q R  +A E      +      +++        G   ++    +   FQ         
Sbjct: 31  EKQSRALEALEKLKAGMRFSEVASQYSED-KARQGGDLGWMARGSMVGPFQEAAFALPVS 89

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKR 276
                  T  P  T+ G   I +  ++
Sbjct: 90  SMDKPVYTDPPVKTKFGYHIIMVEGRK 116


>gi|170084513|ref|XP_001873480.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651032|gb|EDR15272.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 163

 Score = 56.6 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 8/91 (8%), Positives = 21/91 (23%), Gaps = 1/91 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R   +   +     +   +       +      K      K +        G   +    
Sbjct: 69  RPSSWKEENITRTKEEATEILRGHEAKINGSTDKFTELASKHSDCSSHTHGGDLGWFGRG 128

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            +   F++          ++   T  GV  +
Sbjct: 129 QMQKPFEDAAYGLKVGEISDVISTDSGVHLV 159


>gi|114052054|ref|NP_001040206.1| rotamase Pin1 [Bombyx mori]
 gi|87248389|gb|ABD36247.1| rotamase Pin1 [Bombyx mori]
          Length = 169

 Score = 56.6 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 9/91 (9%), Positives = 23/91 (25%), Gaps = 1/91 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R   +         +  +    +   +   R  K       ++        G      + 
Sbjct: 75  RPSSWREEHITRTKEEALDILQEYRRKIIDREAKFEELASTYSDCSSAKRDGDLGRFKKG 134

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            +   F+++         + P  T  G+  I
Sbjct: 135 QMQKPFEDVAFSLKIGQLSQPVHTDSGIHII 165


>gi|268532952|ref|XP_002631604.1| Hypothetical protein CBG20785 [Caenorhabditis briggsae]
 gi|187023057|emb|CAP37736.1| hypothetical protein CBG_20785 [Caenorhabditis briggsae AF16]
          Length = 120

 Score = 56.6 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             Q +  +A E      K      +++      S G   ++    +   FQ+      N+
Sbjct: 35  EKQGKALEAIEKLKSGMKFNEVAAQYSED-KARSGGDLGWMTRGSMVGPFQDAAFALSNS 93

Query: 257 -------TTNPYVTQKGVEYIAICDKR 276
                  T  P  T+ G   I +  K+
Sbjct: 94  SCDKPIYTDPPVKTKFGYHVIMVEGKK 120


>gi|256599537|pdb|2ZR4|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
           Cis-Trans Isomerase
          Length = 163

 Score = 56.6 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 25/103 (24%), Gaps = 1/103 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +       R   +         +  ++      ++ +       +   +F+     
Sbjct: 57  CSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSA 116

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            + G         +   F++          + P  T  G+  I
Sbjct: 117 KARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHII 159


>gi|110591318|pdb|2F21|A Chain A, Human Pin1 Fip Mutant
          Length = 162

 Score = 56.6 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 25/103 (24%), Gaps = 1/103 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +       R   +         +  ++      ++ +       +   +F+     
Sbjct: 56  CSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSA 115

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            + G         +   F++          + P  T  G+  I
Sbjct: 116 KARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHII 158


>gi|321477932|gb|EFX88890.1| hypothetical protein DAPPUDRAFT_191361 [Daphnia pulex]
          Length = 158

 Score = 56.6 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/106 (10%), Positives = 25/106 (23%), Gaps = 1/106 (0%)

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
             Q    +       R   +   +  +  +  +   +   E+             K++  
Sbjct: 49  KVQCSHLLVKHRDSRRPSSWRQDNITISKEEAMDLLVGYQEQIINGEASFAELASKYSDC 108

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                 G         +   F++          + P  T  GV  I
Sbjct: 109 SSAKKGGDLGSFGRGAMQKPFEDAAFSLKVGGMSEPVWTDSGVHII 154


>gi|259501419|ref|ZP_05744321.1| peptidylprolyl isomerase PrsA1 [Lactobacillus iners DSM 13335]
 gi|302190860|ref|ZP_07267114.1| peptidylprolyl isomerase [Lactobacillus iners AB-1]
 gi|309805385|ref|ZP_07699434.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners
           LactinV 09V1-c]
 gi|312875036|ref|ZP_07735054.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LEAF
           2053A-b]
 gi|315653171|ref|ZP_07906096.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus iners ATCC
           55195]
 gi|325911618|ref|ZP_08174026.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners UPII
           143-D]
 gi|259167168|gb|EEW51663.1| peptidylprolyl isomerase PrsA1 [Lactobacillus iners DSM 13335]
 gi|308165312|gb|EFO67546.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners
           LactinV 09V1-c]
 gi|311089431|gb|EFQ47857.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LEAF
           2053A-b]
 gi|315489536|gb|EFU79173.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus iners ATCC
           55195]
 gi|325476604|gb|EGC79762.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners UPII
           143-D]
          Length = 297

 Score = 56.6 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/294 (11%), Positives = 78/294 (26%), Gaps = 41/294 (13%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
           F K L T  ++  F  V + +       S+      G  IT  D   ++           
Sbjct: 3   FKKSLKTLLLIAAFSGVALTATGC----SKTVANYKGGKITQEDFYNKVK-------KSP 51

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
             +  +  +I+    +Q+          NT              + + + +  +     +
Sbjct: 52  AGQAILANMIINKTLQQQYGSQVSKKKVNTAYD----------NARKQYGARFEMVLQQN 101

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
               +          +++          + +              +  ++ +L       
Sbjct: 102 GMTPEAYKESIQTNLLLQAALKDIKPITKAQEKKAW----KEYQPKVRVQHIL------- 150

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESD---LHPQFQ 247
                  +   K   E   +     +  +K+++      + GK +    SD        +
Sbjct: 151 ----VEKEDTAKKVIEELGKGASFKDLAKKYSTDTGTSKNAGKIEPFDSSDTTLDADFKE 206

Query: 248 NLLKKSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH 300
              K      T  P  TQ G   I +      G   + K+ + A+      +  
Sbjct: 207 AAFKLKTGEYTKKPVKTQFGYHIIKMIKHPSKGSFQSHKSEIIARIYQKMAQDQ 260


>gi|301780252|ref|XP_002925543.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4-like [Ailuropoda melanoleuca]
          Length = 131

 Score = 56.6 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK-------KS 253
           +I +A E      +      +++        G   ++    +   FQ             
Sbjct: 50  KIMEAMEKLKSGMRFSEVATQYSED-KARQGGDLGWMTRGSMVGPFQEAAFALPVSGLDK 108

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
              T  P  T+ G   I +  K+
Sbjct: 109 PVFTDPPVKTKFGYHIIMVEGKK 131


>gi|315924902|ref|ZP_07921119.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315621801|gb|EFV01765.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 509

 Score = 56.6 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/295 (10%), Positives = 76/295 (25%), Gaps = 23/295 (7%)

Query: 40  SRIRTTINGEVITDGDISKRI-------------ALLKLQKINGELEKIAVQELIVETLK 86
            +   T++ + +T G+                  A    +     + +   + +      
Sbjct: 190 DKSVGTVDKKKVTHGEYYYYYVGKVLSTYASTGSAPATDRATQKRINQSVFKTIGTYRGM 249

Query: 87  KQEIEKSGITFDSNTV--NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
            Q  +   I   S+ V      +          +       +         +    +   
Sbjct: 250 IQYCKDHHIKISSDAVAAQQKLLNMTLKMYFPKDSTLDSYLQNYGMTAAIFRKYQKEEAK 309

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
               +            ++  + Q +K                  + L     + K+I  
Sbjct: 310 GRAAQAAIRSAL---AKDVKVSNQDVKEYYESHESTYNPKTVSACHILTKDPVLAKKIAK 366

Query: 205 AEESRLRLPKDCNKLEKFASKIHDV--SIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPY 261
             +           + K+++K +              + + P F +     S+N    P 
Sbjct: 367 EAKGIKTKAAFKKLMRKYSTKTNKKVLESMDLGAFKSARMVPAFSKAAFNASKNTAVGPV 426

Query: 262 VTQKGVEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEKHEAEYVKKLRS-NAII 314
            T  G   I + DK          KA ++      + +K   + +K L+   A +
Sbjct: 427 KTTNGYHVIFVYDKTQKKDSWKNHKAAITQSIQQNESKKAYQKQIKDLQDVKADV 481


>gi|308480673|ref|XP_003102543.1| hypothetical protein CRE_04023 [Caenorhabditis remanei]
 gi|308261275|gb|EFP05228.1| hypothetical protein CRE_04023 [Caenorhabditis remanei]
          Length = 119

 Score = 56.6 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             Q +  +A E      K      +++      S G   ++    +   FQ+      N+
Sbjct: 34  EKQGKALEAIEKLKAGMKFNEVASQYSED-KARSGGDLGWMTRGSMVGPFQDAAFALSNS 92

Query: 257 -------TTNPYVTQKGVEYIAICDKR 276
                  T  P  T+ G   I +  K+
Sbjct: 93  SCDKPIYTDPPVKTKFGYHVIMVEGKK 119


>gi|42523892|ref|NP_969272.1| hypothetical protein Bd2456 [Bdellovibrio bacteriovorus HD100]
 gi|39576099|emb|CAE80265.1| unnamed protein product [Bdellovibrio bacteriovorus HD100]
          Length = 345

 Score = 56.6 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/336 (11%), Positives = 93/336 (27%), Gaps = 27/336 (8%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+   ++         F  II   V                 +N  +I+  D  +  
Sbjct: 5   MADKMKRGINAKSVTAMVIFGAIIMVFVFFGMPGQMGAGVGSVARVNNTLISLADFQQEE 64

Query: 61  ALLKLQKIN------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF-- 106
             ++    N              L + A++ L+   L  Q  +KSGI      V  F   
Sbjct: 65  NRIQQYYQNLFGNQMDFGSQRQLLRQQALENLVRMELVSQAAQKSGILATDAEVRDFIVK 124

Query: 107 -VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
            +   +  G+  +DF     +Q        +    + I     +  F L      +E+  
Sbjct: 125 DIPFFQQNGMFQKDFYMRYIEQTRTTPANFEDKVRKDISNVRTRALFELATQPTAVELKK 184

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
                     +  ++   + S    K   +      IK  +E+ ++  +     +    K
Sbjct: 185 ---IQDLRAAKINVLFVKIDSEAATKALTKEKADAAIKALDEALVKGDEAAVNAQLKELK 241

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN-------PYVTQKGVEYIAICDKRDL 278
                 G    L          ++  ++    +                  + + + +  
Sbjct: 242 ATWEETG-LVELGSETFPKITSSVATEAVFELSKTEPLLKRLVRDGNSKYVLKLKESKVE 300

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             +  L+   +      + +     ++   RS + +
Sbjct: 301 EVK-TLEPMSAEMMQKRRGDGMFEAWINMFRSKSHV 335


>gi|221128893|ref|XP_002155754.1| PREDICTED: similar to Y48C3A.16 [Hydra magnipapillata]
          Length = 141

 Score = 56.6 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             Q +  +A        +  +   +++      S G   +++   +   FQ+     Q +
Sbjct: 56  EKQGKCLEAMALLKAGKRFSDVATQYSED-KARSGGDLGWMVRGSMVGPFQDAAFALQPS 114

Query: 257 TT-------NPYVTQKGVEYIAICDKR 276
           T         P  T  G   I I  K+
Sbjct: 115 TVDNPIYTDPPVKTNFGYHIIMIEGKK 141


>gi|261378345|ref|ZP_05982918.1| conserved hypothetical protein [Neisseria cinerea ATCC 14685]
 gi|269145451|gb|EEZ71869.1| conserved hypothetical protein [Neisseria cinerea ATCC 14685]
          Length = 288

 Score = 56.6 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/305 (11%), Positives = 85/305 (27%), Gaps = 25/305 (8%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE---- 71
           +    +  +  +    S  +         T+NG+ I    I  ++A  + +    E    
Sbjct: 1   MKAKILTSVAMLACSGSLFAQT-----LATVNGQKIDSSVIDAQVAAFRAENSRAEDSPR 55

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           L +  ++  +V T+  QE+++  +   +   +     HA       +   SF       +
Sbjct: 56  LRQALLKNEVVNTVVAQEVKRLKLDQSAEFKDTLAKLHAEAKKSGDDKKPSFKTVWSAVE 115

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                      +                E +  A    +         ++          
Sbjct: 116 YE---------LNGRAYALHIAKTQPVSEQDAKAAYDNISGFYKGTQEVQLGEVLTDKED 166

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
              +     + K   ++ L+     ++ ++  +    V +       E D  P +Q +  
Sbjct: 167 NAKKAVADLKAKKGFDAVLKQYSLNDRAKQTGAPDEYVPLKNL----EQDALPLYQAVKD 222

Query: 252 KSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
             +   T  P           + D+R++         L  Q       +     V  L +
Sbjct: 223 LKKGEFTAVPLKNGDFYGVYYVNDRRNVKV--PSFDELKEQIAGDLQAERIDRAVGALLN 280

Query: 311 NAIIH 315
            A I 
Sbjct: 281 KADIK 285


>gi|110590724|pdb|1ZCN|A Chain A, Human Pin1 Ng Mutant
          Length = 161

 Score = 56.6 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 25/103 (24%), Gaps = 1/103 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +       R   +         +  ++      ++ +       +   +F+     
Sbjct: 55  CSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSA 114

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            + G         +   F++          + P  T  G+  I
Sbjct: 115 KARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHII 157


>gi|309807374|ref|ZP_07701339.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners
           LactinV 01V1-a]
 gi|309810061|ref|ZP_07703907.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners SPIN
           2503V10-D]
 gi|312872215|ref|ZP_07732288.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LEAF
           2062A-h1]
 gi|312873587|ref|ZP_07733634.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LEAF
           2052A-d]
 gi|308169383|gb|EFO71436.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners
           LactinV 01V1-a]
 gi|308169560|gb|EFO71607.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners SPIN
           2503V10-D]
 gi|311090840|gb|EFQ49237.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LEAF
           2052A-d]
 gi|311092299|gb|EFQ50670.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners LEAF
           2062A-h1]
          Length = 297

 Score = 56.6 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/294 (10%), Positives = 77/294 (26%), Gaps = 41/294 (13%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
           F K L T  ++  F  V + +       S+      G  IT  D   ++           
Sbjct: 3   FKKSLKTLLLIAAFSGVALTATGC----SKTVANYKGGKITQEDFYNKVK-------KSP 51

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
             +  +  +I+    +Q+          NT              + + + +  +     +
Sbjct: 52  AGQAILANMIINRTLQQQYGSQVSKKKVNTAYD----------NARKQYGARFEMVLQQN 101

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
               +          +++          + +              +  ++ +L       
Sbjct: 102 GMTPEAYKESIQTNLLLQAALKDIKPITKAQEKKAW----KEYQPKVRVQHIL------- 150

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESD---LHPQFQ 247
                  +   K   E   +     +  +K+++      + GK +    SD        +
Sbjct: 151 ----VEKEDTAKKVIEELGKGASFKDLAKKYSTDTGTSKNAGKIEPFDSSDTTLDADFKE 206

Query: 248 NLLKKSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH 300
              K      T  P  TQ G   I +      G   + K+ +  +      +  
Sbjct: 207 AAFKLKTGEYTKKPVKTQFGYHIIKMIKHPSKGSFQSHKSEIITRIYQKMAQDQ 260


>gi|168011406|ref|XP_001758394.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690429|gb|EDQ76796.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 119

 Score = 56.6 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 7/76 (9%), Positives = 19/76 (25%), Gaps = 1/76 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             V K ++   +         +   + +        G   +     +   F+      + 
Sbjct: 40  DAVAKLMQFKSDIESGRATLADLATQNSDCSSAKRGGDLGWFGRGQMQEPFERATFNLNV 99

Query: 255 NNTTNPYVTQKGVEYI 270
              ++   T  G   I
Sbjct: 100 GELSDIIDTDSGSHII 115


>gi|66817294|ref|XP_642500.1| hypothetical protein DDB_G0277775 [Dictyostelium discoideum AX4]
 gi|60470582|gb|EAL68561.1| hypothetical protein DDB_G0277775 [Dictyostelium discoideum AX4]
          Length = 124

 Score = 56.6 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 1/81 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-N 255
             + ++ +A           +  +  +     VS G   Y+   D+  +F +        
Sbjct: 44  EKEAKLMEAVNLIKSGKTFNSVAQSHSEDKARVSSGLLGYIGRGDMVQEFTDRAFNQPIG 103

Query: 256 NTTNPYVTQKGVEYIAICDKR 276
             + P+ TQ G   I + DK+
Sbjct: 104 VVSEPFRTQFGYHIILVEDKK 124


>gi|259090316|pdb|3IK8|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (I)
 gi|259090317|pdb|3IK8|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (I)
 gi|259090318|pdb|3IKD|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (I)
 gi|259090319|pdb|3IKD|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (I)
 gi|259090320|pdb|3IKG|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (I)
 gi|259090321|pdb|3IKG|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (I)
 gi|293651898|pdb|3JYJ|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
 gi|293651899|pdb|3JYJ|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
 gi|294979472|pdb|3I6C|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
 gi|294979473|pdb|3I6C|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
          Length = 123

 Score = 56.6 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 25/103 (24%), Gaps = 1/103 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +       R   +         +  ++      ++ +       +   +F+     
Sbjct: 17  CSHLLVKHSQSRRPSSWRQEQITRTQEEALELINGYIQKIKSGEEDFESLASQFSDCSSA 76

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            + G         +   F++          + P  T  G+  I
Sbjct: 77  KARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHII 119


>gi|56754325|gb|AAW25350.1| SJCHGC06702 protein [Schistosoma japonicum]
          Length = 153

 Score = 56.6 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/107 (10%), Positives = 23/107 (21%), Gaps = 1/107 (0%)

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
             +    +       R   +  P+        +    K  ++               +  
Sbjct: 44  KVRCAHLLVKHNQSRRPSSWKQPNITRSKDEALTLIKKYKKQIETGECTFEELARTESDC 103

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
               S G   +     +   F+    K        P  T  G+  I 
Sbjct: 104 SSAHSGGDLDFFSRGQMQKPFEEAAFKLKIGEMCGPVYTDSGIHLIK 150


>gi|256599526|pdb|2ZQS|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
           Cis-Trans Isomerase
          Length = 163

 Score = 56.6 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 25/103 (24%), Gaps = 1/103 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +       R   +         +  ++      ++ +       +   +F+     
Sbjct: 57  CSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDASSA 116

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            + G         +   F++          + P  T  G+  I
Sbjct: 117 KARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHII 159


>gi|125972872|ref|YP_001036782.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum ATCC 27405]
 gi|256005741|ref|ZP_05430696.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum DSM 2360]
 gi|281417071|ref|ZP_06248091.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum JW20]
 gi|125713097|gb|ABN51589.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum ATCC 27405]
 gi|255990314|gb|EEU00441.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum DSM 2360]
 gi|281408473|gb|EFB38731.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum JW20]
 gi|316940891|gb|ADU74925.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum DSM 1313]
          Length = 463

 Score = 56.6 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/333 (10%), Positives = 93/333 (27%), Gaps = 23/333 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRI----RTTINGE----VIT 52
           M  K  T++   + +L    ++ +       S ++    S+        ING      I 
Sbjct: 1   MVHKKKTAVITGVAVLVGIVIIALAVGYNYYSKRNKPQESKEFGFQALKINGTYVSTDIM 60

Query: 53  DGDISKRIALLK-----LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
             + +K     K     L+  + E   + + ++I   L +  +        +++    ++
Sbjct: 61  KEERNKFFEKYKRNADVLRMNDHERNDMLLDQVIERLLLEDYVNNKSGVTATDSEVEDYI 120

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
                        +    +    +   K  +    +    +      K   L  +     
Sbjct: 121 NRFIKPRYGDSLGTFMSSQGYTNEEEMKAGIKEYILKHKALYKAAKEKNVTLTEQELDEG 180

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI- 226
            +   I  ++  IR +      ++ + +   +K   +               ++++    
Sbjct: 181 YEKHKIQNKKVDIRHI---FISSQERGKEEAKKLADEIYNRLKNNEDFETLAKQYSDDEK 237

Query: 227 HDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK 285
              S G    L        F N            P    +G E + +     +      +
Sbjct: 238 TKESGGVITELRAGFNEAVFDNAVFTAEAGQLLEPIEVARGYEIVYVD---KVTDFYRTR 294

Query: 286 AYLSAQNTPTKIEK--HEAEYVKKLRSNAIIHY 316
              +   T  K  +     E+ ++ + N  I  
Sbjct: 295 DEYAELLTVDKFMQSDAYKEWFEEYKKNYDIEI 327


>gi|224824985|ref|ZP_03698091.1| putative peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
           2002]
 gi|224602656|gb|EEG08833.1| putative peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
           2002]
          Length = 277

 Score = 56.6 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 50/150 (33%), Gaps = 7/150 (4%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN 69
           + F+  +    + + F    + SY   A+       +    I   D+ +    L+ Q  +
Sbjct: 8   NKFVIKVILGAIALTFVGFGVGSYT-TAVDEPYLAKVGNVKIHKQDLDRA---LEGQPAD 63

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF---FVQHARNTGLSAEDFSSFLDK 126
               +  ++ LI + L   +   +G+T     +            N   SAE +  FL  
Sbjct: 64  AATRQAVLENLIRQQLLLADAHAAGLTVSDAQLRKAIASIPALQENGAFSAERYKQFLAG 123

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
           +      F++ +    +    + +    + 
Sbjct: 124 RYQSSVAFEELVKRDILLQGQLTSLLGSQI 153


>gi|312884158|ref|ZP_07743870.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309368206|gb|EFP95746.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 92

 Score = 56.6 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 7/75 (9%), Positives = 24/75 (32%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +++ +D  +   +  K     ++ ++       G         +  QF  +    +    
Sbjct: 15  KEQAEDIIKQLKKGAKFQTLAKRHSTCPSGKRGGDLGEFKRGQMVAQFDKVCFSGETLVP 74

Query: 259 NPYVTQKGVEYIAIC 273
           +   T+ G   + + 
Sbjct: 75  HLVKTKFGWHVVKVL 89


>gi|197302599|ref|ZP_03167654.1| hypothetical protein RUMLAC_01328 [Ruminococcus lactaris ATCC
           29176]
 gi|197298497|gb|EDY33042.1| hypothetical protein RUMLAC_01328 [Ruminococcus lactaris ATCC
           29176]
          Length = 368

 Score = 56.6 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/326 (8%), Positives = 82/326 (25%), Gaps = 34/326 (10%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +  F K +    +      + + +            T+  E IT G ++   A L+  + 
Sbjct: 1   MVRFGKKVAVLTLAGAIAAMSV-TGCGSIKEDATVATVGEEKITLG-VANFYARLQQGQY 58

Query: 69  N--------------------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
                                       + +   ++ L    L  Q   +  ++   +  
Sbjct: 59  ETYYAGMMGTTGEAMWSQDASDGKDYEEQTKDNIMESLENLYLLSQHASEYNVSLSDDEK 118

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN-DFMLKYGNLEM 161
                   +    + +     +           + L IQ+     +K+ + +      + 
Sbjct: 119 KAIKDAAEQFGKDNTDQVKDVVSGSTDTIEKLLELLTIQNKMDTAIKDTETVTADDITDD 178

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           E      +    +           ++ D++ +      +   D+ +          +   
Sbjct: 179 EAAQKSMQYVLFSYTTKDDSGNSTTLSDDEKETLKTTAQNFVDSVKGGADFGTAATEAGV 238

Query: 222 FASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
            A      S          +           ++ + T    T  G+    +    D    
Sbjct: 239 EAQTATFDS-----ESTSPNSDLIAAADALVNEGDVTEVIETDNGLYVAKLTSLLDREAT 293

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKK 307
            + KA +  +    K ++    + + 
Sbjct: 294 DSKKASIVTERKQEKYDEVLKGWKED 319


>gi|75075274|sp|Q4R383|PIN1_MACFA RecName: Full=Peptidyl-prolyl cis-trans isomerase NIMA-interacting
           1; AltName: Full=Peptidyl-prolyl cis-trans isomerase
           Pin1; Short=PPIase Pin1
 gi|67972184|dbj|BAE02434.1| unnamed protein product [Macaca fascicularis]
          Length = 163

 Score = 56.6 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 25/103 (24%), Gaps = 1/103 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +       R   +         +  ++      ++ +       +   +F+     
Sbjct: 57  CSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSA 116

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            + G         +   F++          + P  T  G+  I
Sbjct: 117 KARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHII 159


>gi|119774399|ref|YP_927139.1| peptidyl-prolyl cis-trans isomerase C [Shewanella amazonensis SB2B]
 gi|119766899|gb|ABL99469.1| peptidyl-prolyl cis-trans isomerase C [Shewanella amazonensis SB2B]
          Length = 92

 Score = 56.6 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 7/78 (8%), Positives = 26/78 (33%), Gaps = 1/78 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           Q++ +  ++         +   + ++       G+        +  +F  ++  +  +  
Sbjct: 14  QEQCEVLKKLIEGGADFADIAREHSACPSGSQGGELGSFGPGMMVREFDEVVFSAPLHVV 73

Query: 259 -NPYVTQKGVEYIAICDK 275
             P  TQ G   + +  +
Sbjct: 74  QGPVKTQFGYHLLEVTSR 91


>gi|260813904|ref|XP_002601656.1| hypothetical protein BRAFLDRAFT_114914 [Branchiostoma floridae]
 gi|229286955|gb|EEN57668.1| hypothetical protein BRAFLDRAFT_114914 [Branchiostoma floridae]
          Length = 151

 Score = 56.2 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 8/91 (8%), Positives = 19/91 (20%), Gaps = 1/91 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R   +         +  ++      +                +        G   +    
Sbjct: 57  RPSSWKQDKITRTQEEALELLNDFRQRIVSGEVTLAVLAATESDCSSARKGGDLGFFGPG 116

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            +   F+    K      + P  T  G+  I
Sbjct: 117 QMQKPFEEATFKLKVGELSEPVFTDSGIHII 147


>gi|254503805|ref|ZP_05115956.1| hypothetical protein SADFL11_3844 [Labrenzia alexandrii DFL-11]
 gi|222439876|gb|EEE46555.1| hypothetical protein SADFL11_3844 [Labrenzia alexandrii DFL-11]
          Length = 635

 Score = 56.2 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 12/207 (5%), Positives = 50/207 (24%), Gaps = 18/207 (8%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +      +I  L    ++  F I  +  +      +     +  + ++  +  +      
Sbjct: 1   MRKGAGTWIAKLFIALLIFSFAIWGVTDFLQGYGQNT-VAKVGEKEVSLLEFDRMYRQDL 59

Query: 65  LQKINGELE-------------KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
            +                    + A+  LI +       ++  +    + +         
Sbjct: 60  NRLGQQFGRPLTPQEGASLGIPQQALARLIGQAAMSNAAQELKVGISDDRLGAIIQSDPA 119

Query: 112 NTG----LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
             G             L+     ++ +      ++    V++                + 
Sbjct: 120 FQGASGRYDRSRLQQVLNANDYREDEYVVLRRQEAERGQVIEGLIGGMSAPQAYLAAFDA 179

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQN 194
            + +  +V    I        ++  ++
Sbjct: 180 FQNETRSVEYVAIAAEQIGDIEDPAED 206


>gi|152984891|ref|YP_001348658.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa PA7]
 gi|150960049|gb|ABR82074.1| peptidyl-prolyl cis-trans isomerase C1 [Pseudomonas aeruginosa PA7]
          Length = 92

 Score = 56.2 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 7/77 (9%), Positives = 19/77 (24%), Gaps = 1/77 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-N 255
                 +  ++   R         K ++       G    +    +     N + +    
Sbjct: 12  KTAAEAEQLKQRLARGEDFATLARKHSTCPSGKRGGDLGEVRPGQMVRPIDNAIFRKPVG 71

Query: 256 NTTNPYVTQKGVEYIAI 272
               P  +Q G   + +
Sbjct: 72  VLQGPLKSQFGYHLLEV 88


>gi|115725323|ref|XP_790053.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
 gi|115958685|ref|XP_001194858.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 113

 Score = 56.2 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               +  +A E      +  +  EK++        G   ++    +   FQ+     Q +
Sbjct: 28  EKHSKAMEALEKIKAGERFNSVAEKYSED-KARQGGDLGWMTRGSMVGPFQDAAFALQPS 86

Query: 257 TT-------NPYVTQKGVEYIAICDKR 276
           +T        P  T+ G   I I  K+
Sbjct: 87  STDKPIYTDPPVKTKHGYHIIMIEGKK 113


>gi|321253954|ref|XP_003192910.1| transcriptional elongation regulator [Cryptococcus gattii WM276]
 gi|317459379|gb|ADV21123.1| transcriptional elongation regulator, putative [Cryptococcus gattii
           WM276]
          Length = 178

 Score = 56.2 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/92 (9%), Positives = 22/92 (23%), Gaps = 1/92 (1%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
            R    +IP ++ Q           +        +        +        G   +   
Sbjct: 83  WRNDKITIPPDEAQAIIEKHIAYLQSLPPADVPKEFARIASTESDCSSAKKGGDLGWFGR 142

Query: 240 SDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYI 270
             +   F++    +     +    T  G+  I
Sbjct: 143 GQMQKPFEDATFNTPVGQLSGIVKTDSGIHVI 174


>gi|296116178|ref|ZP_06834796.1| peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977284|gb|EFG84044.1| peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 639

 Score = 56.2 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/390 (8%), Positives = 90/390 (23%), Gaps = 85/390 (21%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSR--IRTTINGEVITDGDISKRIALL 63
              +  ++  +      + F    +        + R  +   +  + I      + +   
Sbjct: 3   RIFVDSWVGRVIVGLFFLTFVGWGVGDVLMNIGTERADVVARVGPDPILVPAYEQALRTE 62

Query: 64  KLQKING---------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV- 107
             Q                   ++ +  +Q LI++          G+    + V      
Sbjct: 63  MPQIAQQMHLDDPSQIPAATREQIAQQVLQRLILQDEVALAARNHGLLVPDSAVRAEIFA 122

Query: 108 ---QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV--------------KN 150
                 +N       F++ L   G+ +    + +  +     ++              + 
Sbjct: 123 IPAFQDKNGKFDRTTFNNRLRSSGMTEARLIELVRAEQASKALMEPIRNGAGAPDLLTRR 182

Query: 151 DFMLKYGNLEMEI--------------------PANKQKMKNITVREYLIRTVLFSIPDN 190
            F L+    +++I                                     R V+ S    
Sbjct: 183 IFDLEAQTRKVDIVRVPFAAQTPAAPSDAQARRFHTNHPWLFEAPEYRHARIVVLSPETV 242

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD---------VSIG--------- 232
                          E+   R      +  +  +  ++            G         
Sbjct: 243 ARSMTIPDADLHHMYEQQAQRFNTPETRSVQVITAPNEARARELLTTWQGGASWDAMQKS 302

Query: 233 --------KAQYLLESDLH--PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL--GG 280
                   +   +  S +      + +     +  + P  T  G     +          
Sbjct: 303 AGKDSASVEMDDIRISSIPSQELGRQIFNAPSDTVSPPIHTDGGWAIFRVLHVTPAHISD 362

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
             + +  L AQ    +++    + V+KL+ 
Sbjct: 363 FESARPALQAQALAERVQAQIGDRVQKLQD 392


>gi|228965301|ref|ZP_04126394.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228794386|gb|EEM41899.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 94

 Score = 56.2 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 4/78 (5%)

Query: 242 LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE 301
           +    +   K      ++P  T  G   I + DK++L     +K  +       +++   
Sbjct: 1   MKEFEEAAYKLDAGQVSDPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDLEQQRLQDTT 60

Query: 302 AEY----VKKLRSNAIIH 315
            ++    V  L ++A I 
Sbjct: 61  GKWKQQVVNDLLNDADIK 78


>gi|311248730|ref|XP_003123277.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           1-like [Sus scrofa]
          Length = 163

 Score = 56.2 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 25/103 (24%), Gaps = 1/103 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +       R   +         +  ++      ++ +       +   +F+     
Sbjct: 57  CSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCNSA 116

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            + G         +   F++          + P  T  G+  I
Sbjct: 117 KARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHII 159


>gi|332016995|gb|EGI57794.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Acromyrmex
           echinatior]
          Length = 127

 Score = 56.2 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             Q +I +A E      K       ++      S G   ++    +   FQ+       +
Sbjct: 42  EKQSKILEALEKLKAGQKFNEIAATYSED-KARSGGDLGWMTRGSMVGPFQDAAFALPVS 100

Query: 257 -------TTNPYVTQKGVEYIAICDKR 276
                  T  P  T+ G   I +  K+
Sbjct: 101 SLGSPVYTDPPVKTKFGYHIIMVEGKK 127


>gi|307208736|gb|EFN86013.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4
           [Harpegnathos saltator]
          Length = 126

 Score = 56.2 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             Q +I +A E      K       ++      S G   ++    +   FQ+       +
Sbjct: 41  EKQSKILEALEKLKAGQKFNEVAATYSED-KARSGGDLGWMTRGSMVGPFQDAAFALPIS 99

Query: 257 -------TTNPYVTQKGVEYIAICDKR 276
                  T  P  T+ G   I +  K+
Sbjct: 100 SLASPVYTDPPVKTKFGYHIIMVESKK 126


>gi|322788443|gb|EFZ14112.1| hypothetical protein SINV_03411 [Solenopsis invicta]
          Length = 129

 Score = 56.2 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             Q +I +A E      K       ++      S G   ++    +   FQ+       +
Sbjct: 44  EKQSKILEALEKLKAGQKFNEVAATYSED-KARSGGDLGWMTRGSMVGPFQDAAFALPIS 102

Query: 257 -------TTNPYVTQKGVEYIAICDKR 276
                  T  P  T+ G   I +  K+
Sbjct: 103 SLASPVYTDPPVKTKFGYHIIMVEGKK 129


>gi|45361247|ref|NP_989201.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Xenopus
           (Silurana) tropicalis]
 gi|82202394|sp|Q6P4K8|PIN4_XENTR RecName: Full=Peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4; AltName: Full=Parvulin-14; Short=Par14; AltName:
           Full=Peptidyl-prolyl cis-trans isomerase Pin4;
           Short=PPIase Pin4; AltName: Full=Rotamase Pin4
 gi|38648988|gb|AAH63359.1| protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4
           (parvulin) [Xenopus (Silurana) tropicalis]
          Length = 127

 Score = 56.2 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 10/83 (12%), Positives = 25/83 (30%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------LLKKS 253
           ++ +A E      +      +++        G   ++    +   FQ+            
Sbjct: 46  KVMEAMEKLKSGVRFSEVATQYSED-KARQGGDLGWMTRGSMVGPFQDAAFALPVSTMDK 104

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
              T  P  T+ G   I +  ++
Sbjct: 105 PVYTDPPVKTKFGYHIIMVEGRK 127


>gi|312113659|ref|YP_004011255.1| hypothetical protein Rvan_0880 [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218788|gb|ADP70156.1| hypothetical protein Rvan_0880 [Rhodomicrobium vannielii ATCC
           17100]
          Length = 365

 Score = 56.2 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 89/268 (33%), Gaps = 10/268 (3%)

Query: 53  DGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA-- 110
              + +      L +  G   K  ++ LI + LK Q  ++  IT     V     Q A  
Sbjct: 99  KKQLVEEAKGRVLSEGGGTSRKQVIETLIEDKLKLQAAKRLEITVSDKEVEEVLAQRAGG 158

Query: 111 -RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
                    +F    +  GI     +  +  Q  W DV++  +  +   +          
Sbjct: 159 GDGKKPQLNEFYQQFEADGISRKTVQNIIRAQLAWRDVIRRQYGPRIAAMLA----ALPT 214

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
                    +   V          ++  V +R+ +AE  R +     +  ++ A  + D 
Sbjct: 215 DDQKPADGDIQFDVRVLRLAVAGSDERAVSQRMMEAENLRSKFTSCADLPKR-AKLVADA 273

Query: 230 SIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
           S+        +  +   Q L+ K S+   T P +    VE  AIC K  +          
Sbjct: 274 SVKAVDKAKLASFNKDAQPLILKASEGQMTPPILVSGAVEAYAICKKGVVLKRNPAAEQ- 332

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                  + ++    Y+++L+ +A I Y
Sbjct: 333 KPDARAQEYDRFSRRYLQELKKSASIDY 360


>gi|225025209|ref|ZP_03714401.1| hypothetical protein EIKCOROL_02106 [Eikenella corrodens ATCC
           23834]
 gi|224941967|gb|EEG23176.1| hypothetical protein EIKCOROL_02106 [Eikenella corrodens ATCC
           23834]
          Length = 288

 Score = 56.2 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/278 (10%), Positives = 67/278 (24%), Gaps = 20/278 (7%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKING-----ELEKIAVQELIVETLKKQEIEKSGITF 97
             T+N   I    I +++ ++  Q         EL +   + L+   L  QE  +  +  
Sbjct: 24  VVTVNNTRIDSSAIDQQVKIINEQSNGQVTDSPELRENIARRLVTRELMIQESRRLRLNE 83

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                        +    +  D  +  + +        +          +V +       
Sbjct: 84  SPE--------FKQIIERARTDARTSGEDRKPTFRQDWETFEGNVTAQALVAHILRSNPV 135

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
                  A ++        + +    +     +  Q      +R +   +   +   D  
Sbjct: 136 TEAQVQQAYQEITNRYRGTQEVKLGEIILNNRDNAQKAVADLRRGRRFTDVARQYTIDTP 195

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN-PYVTQKGVEYIAICDKR 276
                        +       E      +  +    Q   T  P  +        +  KR
Sbjct: 196 SRANGGISPTFTPLKDL----EEGAPMVYNAVKSLGQGKFTETPVESNGIFAIFYMEAKR 251

Query: 277 DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            +       A L  Q           + + +L   A I
Sbjct: 252 PVRV--PPFAQLKPQIQQDLQNLLIEQEIARLYQQANI 287


>gi|325913389|ref|ZP_08175756.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners UPII
           60-B]
 gi|329919662|ref|ZP_08276640.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners SPIN
           1401G]
 gi|325477315|gb|EGC80460.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners UPII
           60-B]
 gi|328937314|gb|EGG33738.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners SPIN
           1401G]
          Length = 297

 Score = 56.2 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/294 (10%), Positives = 77/294 (26%), Gaps = 41/294 (13%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
           F K L T  ++  F  V + +       S+      G  IT  D   ++           
Sbjct: 3   FKKSLKTLLLIAAFSGVALTATGC----SKTVANYKGGKITQEDFYNKVK-------KSP 51

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
             +  +  +I+    +Q+          NT              + + + +  +     +
Sbjct: 52  AGQAILANMIINKTLQQQYGSQVSKKKVNTAYD----------NARKQYGARFEMVLQQN 101

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
               +          +++          + +              +  ++ +L       
Sbjct: 102 GMTPEAYKESIQTNLLLQAALKDIKPITKAQEKKAW----KEYQPKVRVQHIL------- 150

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESD---LHPQFQ 247
                  +   K   E   +     +  +K+++      + GK +    SD        +
Sbjct: 151 ----VEKEDTAKKVIEELGKGASFKDLAKKYSTDTGTSKNAGKIEPFDSSDTTLDADFKE 206

Query: 248 NLLKKSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH 300
              K      T  P  TQ G   I +      G   + K+ +  +      +  
Sbjct: 207 AAFKLKTGEYTKKPVKTQFGYHIIKMIKHPSKGSFQSHKSEIITRIYQKMAQDQ 260


>gi|284040908|ref|YP_003390838.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirosoma linguale
           DSM 74]
 gi|283820201|gb|ADB42039.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirosoma linguale
           DSM 74]
          Length = 133

 Score = 56.2 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 2/75 (2%)

Query: 208 SRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQK 265
                        +++       + GK  +       P+F Q + + S++  + P+ T+ 
Sbjct: 48  KLKAGYAFDKLALEYSQDYGSFTAGGKLGWQKPDIFVPEFNQVISQMSKDQFSKPFKTEF 107

Query: 266 GVEYIAICDKRDLGG 280
           G   + + DK+    
Sbjct: 108 GYHIVQLLDKKPGEV 122


>gi|331701588|ref|YP_004398547.1| Foldase protein prsA [Lactobacillus buchneri NRRL B-30929]
 gi|329128931|gb|AEB73484.1| Foldase protein prsA [Lactobacillus buchneri NRRL B-30929]
          Length = 298

 Score = 56.2 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 80/282 (28%), Gaps = 37/282 (13%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           +I     ++S+   A  S+   T NG  IT+               +    K  +Q++I+
Sbjct: 9   LIVLAGIMMSFTLAACGSKTVATTNGGKITES-------AYYSSLKSTSSGKQVLQQMIL 61

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
             + +++  K       + VN  F ++ +  G S              +      L    
Sbjct: 62  NKVLEKQYGK---DVKDSQVNSEFAKYKKQYGSSFNSVL-------QQNGMTASQLKDSI 111

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
               ++K          + ++    +  +                     Q     +   
Sbjct: 112 RSNLLLKQAVKDNVKITDAQLETQFKSYQPK---------------VTVNQILVSKKSTA 156

Query: 203 KDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYL--LESDLHPQFQNLLKK-SQNNTT 258
           +             +  +K+++        G+        + L   F+    K      T
Sbjct: 157 EKVISELKDGKSFSSLAKKYSTDTATKNKGGRIAAFDNTNTSLDANFKKAAFKLKNGEYT 216

Query: 259 N-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
             P  TQ G + I + +    G     ++ L  Q   +K+  
Sbjct: 217 KTPVKTQYGYQVIQMVNHPSKGTWKQHESELKDQIVTSKMSD 258


>gi|170725314|ref|YP_001759340.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella woodyi
           ATCC 51908]
 gi|169810661|gb|ACA85245.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella woodyi
           ATCC 51908]
          Length = 92

 Score = 56.2 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 9/77 (11%), Positives = 23/77 (29%), Gaps = 4/77 (5%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           ++  ++  +   +  K     +K ++       G      +  + P F  +         
Sbjct: 15  KELAEEIIQKLNKGAKFDQLAKKHSTCPSGKKGGSLGEFKKGQMVPAFDKV--CFTGELI 72

Query: 259 NP--YVTQKGVEYIAIC 273
            P    T+ G   I + 
Sbjct: 73  TPHLVKTKFGWHVIKVL 89


>gi|221133455|ref|ZP_03559760.1| peptidyl-prolyl cis-trans isomerase C [Glaciecola sp. HTCC2999]
          Length = 92

 Score = 56.2 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 22/76 (28%), Gaps = 1/76 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN- 255
             +K+  D      +        ++ ++       G         +  QF +++ K    
Sbjct: 12  KTEKQALDILAQIKQGKDFGKLAKQHSTCPSRKRGGDLGEFKRGQMVKQFDDVVFKKPIL 71

Query: 256 NTTNPYVTQKGVEYIA 271
               P  T+ G   I 
Sbjct: 72  TVHGPVKTKFGYHLIK 87


>gi|255514246|gb|EET90507.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Micrarchaeum acidiphilum ARMAN-2]
          Length = 91

 Score = 56.2 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 9/70 (12%), Positives = 24/70 (34%), Gaps = 1/70 (1%)

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPY 261
           ++  +   +        E+++        G   +  +  +  +F++   K  +  T+   
Sbjct: 19  QEVLDKLAKGESFAKLAEEYSIDGSRKRGGDLGFFGKGVMVREFEDAAFKLEKGQTSGIV 78

Query: 262 VTQKGVEYIA 271
            TQ G   I 
Sbjct: 79  KTQFGYHIIK 88


>gi|288958078|ref|YP_003448419.1| peptidyl-prolyl cis-trans isomerase D [Azospirillum sp. B510]
 gi|288910386|dbj|BAI71875.1| peptidyl-prolyl cis-trans isomerase D [Azospirillum sp. B510]
          Length = 626

 Score = 56.2 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/378 (7%), Positives = 79/378 (20%), Gaps = 78/378 (20%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVI----TDGDI 56
           M   +      ++  +    +++ F I  I      +        +    I     D + 
Sbjct: 1   MLQFIRNFAGSWVVKILFVLLILSFGIWGIGDVFRSSTP-TTVAEVGKVEIGQQALDQEF 59

Query: 57  SKRIALLKL---------QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
            +++  L+          Q     L + ++Q LI  TL        GI      V     
Sbjct: 60  RRQMERLRPMLGGNLTTDQAKRFGLLEQSLQSLIQRTLFDLAATDMGIAVGPEVVRLRIA 119

Query: 108 QHARNTGLSAEDFSSFLD---KQGIGDNHFKQYLAIQSIWPDVV---------------- 148
                     +   +      +           +  +     +V                
Sbjct: 120 DEPAFRNQQGKFDPNIFRSVLRNNQLTEDGYVAMIQRETARQLVAGAVSAGLAPPQPLVQ 179

Query: 149 -------KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP------------- 188
                  +             I            + Y    V F+ P             
Sbjct: 180 DLYRFRGEKRVAEVVTLPNASIGDVGAPDDAAIKQAYEDHQVRFTAPEYRALTVARLSPD 239

Query: 189 ---DNKLQNQGFVQKRIKDA----------------EESRLRLPKDCNKLEKFASKIHDV 229
               +   +   ++K  ++                  +   +  +     +         
Sbjct: 240 ALAKDIKIDDAQLRKAYEERANEFGAPEKRTVQMVVVDDEAKAKRIAEAAKAKGLAEAAK 299

Query: 230 SIG----KAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK 285
             G        + ++DL               ++   +  G   +A+        +    
Sbjct: 300 ETGVEPVSLDNIGKADLPEIGDAAFALEPGKPSDAIKSALGWHVMAVTGVTPASTKS--F 357

Query: 286 AYLSAQNTPTKIEKHEAE 303
             +  Q      ++   +
Sbjct: 358 EDVRDQLAAEMKKEQALD 375


>gi|127513936|ref|YP_001095133.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella loihica
           PV-4]
 gi|126639231|gb|ABO24874.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella loihica
           PV-4]
          Length = 92

 Score = 56.2 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 9/77 (11%), Positives = 23/77 (29%), Gaps = 4/77 (5%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           ++  ++  E   +  K     +K ++       G      +  + P F  +         
Sbjct: 15  KELAEEIIEKLNKGAKFDQLAKKHSTCPSGKKGGSLGEFKKGQMVPAFDKV--CFSGELI 72

Query: 259 NP--YVTQKGVEYIAIC 273
            P    T+ G   + + 
Sbjct: 73  TPHLVKTKFGWHVVKVL 89


>gi|94969792|ref|YP_591840.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94551842|gb|ABF41766.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 654

 Score = 56.2 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 67/238 (28%), Gaps = 3/238 (1%)

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           + +      + +       +  +       +    S  +  ++ +               
Sbjct: 178 VADADIDNLVRQQQTKVKFDYASLSLADIEKGINPSDAEMKAWYEAHKDQFKDSLPEKRK 237

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
                 +      ++  + +++   N  K +    +   ++ +L  +P           K
Sbjct: 238 IKYVSVIGSKLPGVQPSDADIQKYYNDHKTEFTIPQTATVQHILVMVPQGADAKTDAAAK 297

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTN 259
              +    + R   +  +L K  S          +   + +L  +F++        +   
Sbjct: 298 AKAEDYLKQARGGANFGELAKKYSDDKGTGDSTLEVTPQGNLVKEFKDASLAGKTGDILG 357

Query: 260 PYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           P  TQ G   I I      G      +K+ ++      K      +    LR++A + 
Sbjct: 358 PVKTQFGYHIIKIQKNEPAGARSLDEVKSQIAIVMGGQKAADAAQKAADNLRNSARVQ 415



 Score = 44.7 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 71/233 (30%), Gaps = 24/233 (10%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWA----------MSSRIRTTINGEVITDGDISKRIALL 63
           K +    +L + C++ +V+                       ++GE IT  D SK    +
Sbjct: 12  KKIVLGGLLTVICVMMVVTLIPGGGIFGFGDTTVTGDSDLAKVDGEAITAADASKAAQNM 71

Query: 64  KLQKINGE-----LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ-------HAR 111
             Q+         L   AV+ LI +     E  + G+      +     +         +
Sbjct: 72  AQQQRYPAQFVPFLMPQAVEMLIKQKAVLDEAHRMGLNVSDEELRAVLHKGQFGEILFPK 131

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
              +  + + +F+  Q        +    +SI    ++          + +I    ++ +
Sbjct: 132 GNYVGDDAYQNFVQSQFSMTVPQFELELKKSIEIQKLRGVVEASATVADADIDNLVRQQQ 191

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
                +Y   ++          +     K   +A + + +      +  K+ S
Sbjct: 192 TKVKFDYASLSLADIEKGINPSDAEM--KAWYEAHKDQFKDSLPEKRKIKYVS 242


>gi|223984303|ref|ZP_03634447.1| hypothetical protein HOLDEFILI_01741 [Holdemania filiformis DSM
           12042]
 gi|223963736|gb|EEF68104.1| hypothetical protein HOLDEFILI_01741 [Holdemania filiformis DSM
           12042]
          Length = 365

 Score = 56.2 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/275 (10%), Positives = 65/275 (23%), Gaps = 25/275 (9%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSY---------KSWAMSSRIRTTINGEVITDGDISKR 59
           L    K      V ++     I                    +  +I  + IT G+    
Sbjct: 2   LQTLKKYWFVCLVGVLLIGASIYFAYDQNKGKLPGKSVGGEDVVFSIGDQDITAGEFYDT 61

Query: 60  I-ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
           +   + +  +   +EK  V   I  T + +   +S     +      +    +   L+A 
Sbjct: 62  LFNEMGVAGVYQFMEKAVVDPSIETTEEMKTQAQSYADSITAQYQSTYGDQYKEMLLTAL 121

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
           +   +     + D         Q                +                 +  
Sbjct: 122 NGVGYSKLSDLTDYFIHIQKTQQM-------------IKDYINAHADEYIPAYVEAKKPR 168

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
           ++  +L  + D     +    +     +             E        V  G   Y+ 
Sbjct: 169 IVSHILIKMDDPANPTEEETNRVNAVKDALASGRDFGEVAQELSEDSGSAVQNGSIGYMD 228

Query: 239 ESD--LHPQFQNLLKKSQNNTTNPYVTQKGVEYIA 271
                + P  +  L  ++   +    T  G   I 
Sbjct: 229 ADSQLVSPFLETALAMNEGEVSEWIQTTYGWHIIK 263


>gi|145299728|ref|YP_001142569.1| peptidyl-prolyl cis-trans isomerase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852500|gb|ABO90821.1| peptidyl-prolyl cis-trans isomerase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 92

 Score = 56.2 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 26/78 (33%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQN 255
             +K+  + +E   +        ++F++       G      + D+   F + + K    
Sbjct: 12  KTEKQCLEIKEKLAKGADFGQMAKRFSTCASSKRSGDLGEFSKGDMVKPFDDAVFKGELL 71

Query: 256 NTTNPYVTQKGVEYIAIC 273
               P  T+ G   I + 
Sbjct: 72  TVLGPVRTKFGFHLIKVL 89


>gi|82931574|ref|XP_922271.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4-like [Mus musculus]
 gi|148677150|gb|EDL09097.1| mCG140299 [Mus musculus]
          Length = 131

 Score = 56.2 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------LLKKS 253
           +I +A E      +      +++        G   ++    +   FQ             
Sbjct: 50  KIMEAMEKLKSGMRFSEVATQYSED-KARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDK 108

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
              T  P  T+ G   I +  ++
Sbjct: 109 PVFTDPPVKTKFGYHIIMVEGRK 131


>gi|113931156|ref|NP_081457.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Mus
           musculus]
 gi|82905251|ref|XP_897983.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4-like [Mus musculus]
 gi|20139149|sp|Q9CWW6|PIN4_MOUSE RecName: Full=Peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4; AltName: Full=Parvulin-14; Short=Par14; AltName:
           Full=Peptidyl-prolyl cis-trans isomerase Pin4;
           Short=PPIase Pin4; AltName: Full=Rotamase Pin4
 gi|12845707|dbj|BAB26863.1| unnamed protein product [Mus musculus]
 gi|111600200|gb|AAI19358.1| Protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4
           (parvulin) [Mus musculus]
 gi|111601005|gb|AAI19356.1| Protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4
           (parvulin) [Mus musculus]
 gi|123229763|emb|CAM24632.1| protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 4
           (parvulin) [Mus musculus]
 gi|148682182|gb|EDL14129.1| mCG116634 [Mus musculus]
 gi|149042164|gb|EDL95871.1| rCG36372, isoform CRA_a [Rattus norvegicus]
          Length = 131

 Score = 56.2 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------LLKKS 253
           +I +A E      +      +++        G   ++    +   FQ             
Sbjct: 50  KIMEAMEKLKSGMRFSEVATQYSED-KARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDK 108

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
              T  P  T+ G   I +  ++
Sbjct: 109 PVFTDPPVKTKFGYHIIMVEGRK 131


>gi|314936106|ref|ZP_07843453.1| foldase protein PrsA [Staphylococcus hominis subsp. hominis C80]
 gi|313654725|gb|EFS18470.1| foldase protein PrsA [Staphylococcus hominis subsp. hominis C80]
          Length = 329

 Score = 56.2 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 73/230 (31%), Gaps = 17/230 (7%)

Query: 91  EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
           +K     D+  ++    +  +  G   + F S L +QG+  + +K+   + +    ++ +
Sbjct: 80  DKYKDKVDTKRIDDDIKKEEKQYG-GKDQFESMLKQQGMTLDDYKEQKRLSAYQKQLLND 138

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
              +    ++ +       +  +                   + Q  V+K     +E   
Sbjct: 139 KIKVSDKEIKDDTKKASHILIKVKSDSDKEGLSDKKAKAKAEKIQKEVEKNPNKFDELAK 198

Query: 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEY 269
           +   D    +K          G   Y+++  +  +F + L K  +   ++   T+ G   
Sbjct: 199 KESMDSASAKK---------GGSLGYVIKGQMVDKFDKALFKLKEGQISDIVKTEYGYHI 249

Query: 270 IAICDKRDLGGEIALKAYLSAQNTPTKIE---KHEAEYVKKLRSNAIIHY 316
           I              K+ L  +    K++   K      K L     + Y
Sbjct: 250 IKAN---KEDDFNKQKSQLKTKIIEQKVQKNPKLLTNAYKDLLKEYNVDY 296


>gi|190571205|ref|YP_001975563.1| hypothetical protein WPa_0803 [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190357477|emb|CAQ54911.1| hypothetical protein WP0803 [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 375

 Score = 56.2 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 85/245 (34%), Gaps = 28/245 (11%)

Query: 37  AMSSRIRTTINGEVITDGDISKRIALLKLQK-----INGELEKIAVQELIVETLKKQEIE 91
           A    I   +NGE I++ DI +RI  +            E++   +++LI E +   E +
Sbjct: 18  ATEIEIVADVNGEPISNLDIERRINFINSLLGTQKINQKEVKSQILRQLIDEIIIVSEAQ 77

Query: 92  KSGITFDSNTVNYFFVQHARN-TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
           K  I   +  +N            L A++   ++ K  I  N  K+ +  Q +W  +++ 
Sbjct: 78  KMNIELSNEELNNAVTLFLTQSLKLKADEVDQYVKKHNIDLNTLKKQIKCQLLWNKIIEV 137

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
             +      + E+   +++ +           ++      +   +        ++     
Sbjct: 138 GVVPLINISDQEVDDARKQKEKSDYLITFQEFIIPDQKIAEDLVKKLRTSNNPESSIKMS 197

Query: 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYI 270
           +   + ++L+           GK + +LE               ++   P    +G   I
Sbjct: 198 KATVNLSQLK-----------GKLKDVLEG-----------LEISDVAGPVSLSEGYSVI 235

Query: 271 AICDK 275
            + DK
Sbjct: 236 KVIDK 240


>gi|156541530|ref|XP_001603612.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 130

 Score = 56.2 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             Q +I +A E      K       ++      S G   ++    +   FQ        +
Sbjct: 45  EKQSKILEAMEKLKAGQKFNEVAATYSED-KARSGGDLGWMTRGSMVGPFQEAAFALPIS 103

Query: 257 -------TTNPYVTQKGVEYIAICDKR 276
                  T  P  T+ G   I +  K+
Sbjct: 104 SLGSPVYTDPPVKTKFGYHIIMVEGKK 130


>gi|93006642|ref|YP_581079.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter
           cryohalolentis K5]
 gi|92394320|gb|ABE75595.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter
           cryohalolentis K5]
          Length = 92

 Score = 56.2 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 9/77 (11%), Positives = 23/77 (29%), Gaps = 4/77 (5%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +++ +D      +        +K+++       G      + D+ P F            
Sbjct: 15  KEQAEDILAKLKKGNMFDVLAKKYSTCPSAKKGGSLGEFKQGDMVPPFDK--ICFSGELL 72

Query: 259 NP--YVTQKGVEYIAIC 273
            P    T+ G   + + 
Sbjct: 73  TPHLVKTKFGWHVVKVL 89


>gi|126662091|ref|ZP_01733090.1| peptidyl-prolyl cis-trans isomerase (survival protein)
           [Flavobacteria bacterium BAL38]
 gi|126625470|gb|EAZ96159.1| peptidyl-prolyl cis-trans isomerase (survival protein)
           [Flavobacteria bacterium BAL38]
          Length = 451

 Score = 56.2 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/243 (11%), Positives = 74/243 (30%), Gaps = 8/243 (3%)

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           K     L      +  I  +    + + +N          G   +    +  K       
Sbjct: 71  KQLEDRLYAHHAIQDSIIVTDAEVN-SFLNEQLDAAVEQIGSIDKVVKYYNKKNVEELRS 129

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                   +   D ++   +        E+    + +    +  +     +  I  N + 
Sbjct: 130 HFFDAVKMNKLTDQMQKKILESVEITPEEVRNFFKGIPADEIPTFGAEMEVAQIVVNPVV 189

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEK---FASKI-HDVSIGKAQYLLESDLHPQFQNL 249
            +   ++ I    E R  +    +   K   F+       + G  +   ++    +F+++
Sbjct: 190 GEDEKKRVIDKLNEIRQDVINGSSFFSKAVLFSEDPGSSSNGGFYKMNRKTAFVKEFKDV 249

Query: 250 LKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
               ++   + P+ T+ G   I +   +    E  L+  L +     +  K   E ++++
Sbjct: 250 AFSLAEGEISEPFETEFGYHIIKVEKIKGQEVE--LRHILISPKVSIQAMKDAKEKIEQI 307

Query: 309 RSN 311
           R+ 
Sbjct: 308 RNK 310


>gi|66472646|ref|NP_001018389.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Danio
           rerio]
 gi|82228864|sp|Q503Y7|PIN4_DANRE RecName: Full=Peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4; AltName: Full=Parvulin-14; Short=Par14; AltName:
           Full=Peptidyl-prolyl cis-trans isomerase Pin4;
           Short=PPIase Pin4; AltName: Full=Rotamase Pin4
 gi|63101795|gb|AAH95126.1| Zgc:110008 [Danio rerio]
 gi|182889122|gb|AAI64671.1| Zgc:110008 protein [Danio rerio]
          Length = 128

 Score = 56.2 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------LLKKS 253
           +  +A E      +      +++        G   ++    +   FQ+            
Sbjct: 47  KCMEAMEKIKSGMRFSEVAAQYSED-KARQGGDLGWMTRGSMVGPFQDAAFALPISTMDK 105

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
              T  P  T+ G   I +  K+
Sbjct: 106 PVYTDPPVKTKFGYHIIMVEGKK 128


>gi|327277093|ref|XP_003223300.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           1-like [Anolis carolinensis]
          Length = 92

 Score = 56.2 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 7/66 (10%), Positives = 18/66 (27%), Gaps = 1/66 (1%)

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQ 264
           ++ +           +F+      + G         +   F++          + P  T 
Sbjct: 23  QKIKSGEEDFETLASQFSDCSSAKAGGDLGTFGRGQMQKPFEDASFALRTGEMSGPVFTD 82

Query: 265 KGVEYI 270
            G+  I
Sbjct: 83  SGIHII 88


>gi|304361792|gb|ADM26246.1| MIP25048p [Drosophila melanogaster]
          Length = 303

 Score = 56.2 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/196 (6%), Positives = 41/196 (20%), Gaps = 1/196 (0%)

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
            G       S  +         K +  +          +          +     +    
Sbjct: 82  FGWEERIAHSTKECYFYDTITRKVHFTLPPSHHREKDRNAWGAILGDYSDFNDQLRCRHI 141

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
           +       R   +     +   Q  + K +   +  +    +        +        G
Sbjct: 142 LVKHSESDRCSSYRERMVRRTKQEALNKIMHARDLIQSGKFEFAELANMISDCCSARHGG 201

Query: 233 KAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ 291
               L  +     F+  +        +  + T+ G   +       +      +     +
Sbjct: 202 DLGPLSLTQTPFVFERNILLLKDGELSEIFQTKAGYHILLRTPINYINYSTKNRRRRLKK 261

Query: 292 NTPTKIEKHEAEYVKK 307
                 +     ++KK
Sbjct: 262 IFIANEKAKSKAHLKK 277


>gi|220904184|ref|YP_002479496.1| hypothetical protein Ddes_0911 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868483|gb|ACL48818.1| hypothetical protein Ddes_0911 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 390

 Score = 56.2 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 80/288 (27%), Gaps = 31/288 (10%)

Query: 40  SRIRTTINGEVITDGDIS-----KRIALLKLQKIN-GELEKI---AVQELIVETLKKQEI 90
             +  T+NGE I    +      +  AL  +Q+ +   +++    A+  LI+  L  QE+
Sbjct: 51  EGVVATVNGEPIYLRTVQALLDGRSAALDTMQRPSLENMKRQYGDALGTLIIYALVNQEL 110

Query: 91  EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
               I    + V         + G   E+ + FL ++ +  N ++  +          K 
Sbjct: 111 RSLQIPVTESAVESAVANVRADYG-GEEELARFLAEESLDGNEWRLLMRDYLAMQSFEKR 169

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF--SIPDNKLQNQGFVQKRIKDAEES 208
             +         +    ++ +        +   L                       EE 
Sbjct: 170 VLLPGIRISLDSVRGYYKRHETEFNLPETLDICLTSAVDRQAVDNFCASFASVGPVREEQ 229

Query: 209 RLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVE 268
              L   C +    A   +    G                L K +      P        
Sbjct: 230 TGELLLQCVEAGA-AQLPNAWQKG----------------LEKLAPGQCLPPRQEGDRWF 272

Query: 269 YIAICDKRDLGGEIALKAY--LSAQNTPTKIEKHEAEYVKKLRSNAII 314
            +A+  +         +AY  +       + E   A ++    S A +
Sbjct: 273 GLALVRRNPAHVMSVAEAYPLIENILREREKEAAFAHWLTAALSRAQV 320


>gi|319892874|ref|YP_004149749.1| Foldase protein PrsA precursor [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162570|gb|ADV06113.1| Foldase protein PrsA precursor [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464093|gb|ADX76246.1| foldase protein PrsA [Staphylococcus pseudintermedius ED99]
          Length = 318

 Score = 56.2 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/251 (11%), Positives = 64/251 (25%), Gaps = 12/251 (4%)

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
            ++ K    E I     K  + K       + V+   +    +  +         +    
Sbjct: 45  EDVLKEIGNEQIASQSFKVLLNKILEKKYGDKVDQKQIDKETDEEIEKYGGKKQFESLLK 104

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                      Q       K     K    + EI               LI+        
Sbjct: 105 QQGMTIDDYKEQRKLVSYQKELLNEKVKVSDKEIK-----ESTKKASHILIKVKQDKDDK 159

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
             L ++   +K  +  E+            ++ +        G   Y+++  +   F+  
Sbjct: 160 EGLSDKDAKKKIDEIKEKLDKNPKDFDKIAKEESMDSTKDKNGSLGYVIKGQMVKPFEEA 219

Query: 250 -LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK---HEAEYV 305
             K  +   ++   T+ G   I              K+ L  +    K+++      +  
Sbjct: 220 LFKLKEGQISDVVKTEYGYHIIRAD---KEDDFDKEKSKLKEKIIQNKLQEDPKILTDAY 276

Query: 306 KKLRSNAIIHY 316
           K L     + Y
Sbjct: 277 KDLLDEYNVDY 287


>gi|90408115|ref|ZP_01216285.1| peptidyl-prolyl cis-trans isomerase C [Psychromonas sp. CNPT3]
 gi|90310801|gb|EAS38916.1| peptidyl-prolyl cis-trans isomerase C [Psychromonas sp. CNPT3]
          Length = 92

 Score = 56.2 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 23/70 (32%)

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVT 263
           D  +   +  K     +K++S       G      +  + P F  +   +Q  T     T
Sbjct: 20  DIMQQLKKGAKFQTLAKKYSSCPSAKKGGSLGEFKKGSMVPAFDKVCFSAQILTPQIVKT 79

Query: 264 QKGVEYIAIC 273
           + G   I + 
Sbjct: 80  KFGWHVIKVL 89


>gi|260769945|ref|ZP_05878878.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio furnissii CIP
           102972]
 gi|260615283|gb|EEX40469.1| peptidyl-prolyl cis-trans isomerase PpiC [Vibrio furnissii CIP
           102972]
 gi|315182059|gb|ADT88972.1| peptidyl-prolyl cis-trans isomerase C [Vibrio furnissii NCTC 11218]
          Length = 92

 Score = 56.2 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 25/75 (33%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +++  D  +   +  K     +K++        G      +  + PQF     K +  T 
Sbjct: 15  KEQADDIMQQLKKGAKFQTLAKKYSLCPSGKKGGDLGEFRQGQMVPQFDKACFKGEILTP 74

Query: 259 NPYVTQKGVEYIAIC 273
               T+ G   I + 
Sbjct: 75  QLVKTKFGWHVIKVL 89


>gi|156370357|ref|XP_001628437.1| predicted protein [Nematostella vectensis]
 gi|156215413|gb|EDO36374.1| predicted protein [Nematostella vectensis]
          Length = 108

 Score = 56.2 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               +  +A E      K       ++        G   ++    +   FQ    + Q +
Sbjct: 23  EKHSKAMEAMEKLKAGQKFNEVATAYSED-KARQGGDLGWMTRGSMVGPFQEAAFELQTS 81

Query: 257 TTN-------PYVTQKGVEYIAICDKR 276
           T +       P  T+ G   I +  K+
Sbjct: 82  TVDRPVYTDPPVKTKFGYHIIMVEGKK 108


>gi|157963035|ref|YP_001503069.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella pealeana
           ATCC 700345]
 gi|167625206|ref|YP_001675500.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           halifaxensis HAW-EB4]
 gi|157848035|gb|ABV88534.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella pealeana
           ATCC 700345]
 gi|167355228|gb|ABZ77841.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           halifaxensis HAW-EB4]
          Length = 92

 Score = 56.2 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 4/72 (5%)

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP--Y 261
           D  +   +  K     +K ++       G      +  + PQF  +          P   
Sbjct: 20  DIIKQLNKGAKFDVLAKKHSTCPSGKKGGSLGEFKKGQMVPQFDKV--CFTGELITPHLV 77

Query: 262 VTQKGVEYIAIC 273
            T+ G   I + 
Sbjct: 78  KTKFGWHVIKVL 89


>gi|74007777|ref|XP_849819.1| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase
           NIMA-interacting 4 (Rotamase Pin4) (PPIase Pin4) [Canis
           familiaris]
          Length = 224

 Score = 56.2 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------LLKKS 253
           +I +A E      +      +++        G   ++    +   FQ             
Sbjct: 143 KIMEAMEKLKSGMRFNEVATQYSED-KARQGGDLGWMTRGSMVGPFQEAAFALPVSGPDE 201

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
              T  P  T+ G   I +  ++
Sbjct: 202 PVFTDPPIRTEFGYHIIMVEGRK 224


>gi|317494801|ref|ZP_07953212.1| ppic-type ppiase domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316917126|gb|EFV38474.1| ppic-type ppiase domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 93

 Score = 56.2 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 21/78 (26%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +K+  D  E            +K +        G      +  + P F + +      
Sbjct: 13  KEEKQALDLLEQLKNGGDFEKLAKKHSICPSGRKGGHLGEFKQGAMVPAFDKVVFSCPLL 72

Query: 256 NTTNPYVTQKGVEYIAIC 273
               P  TQ G   I + 
Sbjct: 73  EPYGPLHTQFGYHIIKVL 90


>gi|156541340|ref|XP_001599709.1| PREDICTED: similar to ENSANGP00000014025 [Nasonia vitripennis]
          Length = 162

 Score = 56.2 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 10/92 (10%), Positives = 21/92 (22%), Gaps = 1/92 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R   +            ++   +  E+         +   K++        G        
Sbjct: 68  RPSSWRESTITRSKAEALELVKEYREQIVSGEASFGSLASKYSDCSSAKRNGDLGPFGRG 127

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
            +   F+           + P  T  GV  I 
Sbjct: 128 AMQKPFEEAAFALKVGQISQPIDTDSGVHIIQ 159


>gi|322828325|gb|EFZ32193.1| peptidyl-prolyl cis-trans isomerase/rotamase, putative [Trypanosoma
           cruzi]
          Length = 117

 Score = 55.8 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 7/104 (6%), Positives = 26/104 (25%), Gaps = 1/104 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
            +           +         +     + +  + A+          +   + +     
Sbjct: 11  HLLIKFDGSRNCVSHRTGKSTADVTYDAALAELKQWAKRIADGEITFEDAARQRSDCGSY 70

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
            S G   +     +   F++  +  +    +    T+ G+  I 
Sbjct: 71  NSGGDLGFFGPGVMMKPFEDAARSLNVGEVSGVVRTESGLHIIK 114


>gi|159162752|pdb|1NMW|A Chain A, Solution Structure Of The Ppiase Domain Of Human Pin1
          Length = 114

 Score = 55.8 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 25/103 (24%), Gaps = 1/103 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +       R   +         +  ++      ++ +       +   +F+     
Sbjct: 8   CSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSA 67

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            + G         +   F++          + P  T  G+  I
Sbjct: 68  KARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHII 110


>gi|116492445|ref|YP_804180.1| peptidylprolyl isomerase [Pediococcus pentosaceus ATCC 25745]
 gi|122266091|sp|Q03GD4|PRSA_PEDPA RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|116102595|gb|ABJ67738.1| Parvulin-like peptidyl-prolyl isomerase [Pediococcus pentosaceus
           ATCC 25745]
          Length = 295

 Score = 55.8 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/287 (11%), Positives = 71/287 (24%), Gaps = 43/287 (14%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K +   F  I                ++   T +G  IT  +    +        N   
Sbjct: 1   MKKVLIGFASIAMAFTLAACG------NKTVATTSGGKITQDEYYSSLK-------NTTS 47

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            K  +QE+IV  + +++                     +      + + S        + 
Sbjct: 48  GKQVLQEMIVNKVLEKQYGDKVSKKTVT----------KQYNSYKDQYGSSFKSILSSNG 97

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                L  Q     ++K            ++    +  +                     
Sbjct: 98  MTTSSLKTQIRSNLLLKEAVKANDKISNADLKKEWKSYEPK---------------VTVA 142

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYL--LESDLHPQFQNL 249
           Q     +   +D  +            +++++        GK        S L   F+  
Sbjct: 143 QILVSKKSTAEDIIKKLNDGGDFTKLAKQYSTDSSTKNKGGKIAAFDDTNSTLDSSFKKA 202

Query: 250 LKKSQNN--TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP 294
             K      TT P  T+ G + I + +K   G        L  +   
Sbjct: 203 AFKLDEGKYTTTPVKTEYGYQVIKMINKPSKGKMSDHTKELKERIWN 249


>gi|242051344|ref|XP_002463416.1| hypothetical protein SORBIDRAFT_02g043490 [Sorghum bicolor]
 gi|241926793|gb|EER99937.1| hypothetical protein SORBIDRAFT_02g043490 [Sorghum bicolor]
          Length = 304

 Score = 55.8 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 8/82 (9%), Positives = 25/82 (30%)

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQK 265
           +          +   + +      + G   ++ +  + P+F+     +  N      T+ 
Sbjct: 118 KSIIAGGADLSDLAVEHSLCPSKENGGMLGWVRKGQMVPEFEEAAFSAPLNKVVRCKTKF 177

Query: 266 GVEYIAICDKRDLGGEIALKAY 287
           G   + +  +RD      +   
Sbjct: 178 GWHLLQVLAERDQCVLQDIDPE 199


>gi|323491007|ref|ZP_08096201.1| hypothetical protein GPDM_16601 [Planococcus donghaensis MPA1U2]
 gi|323395363|gb|EGA88215.1| hypothetical protein GPDM_16601 [Planococcus donghaensis MPA1U2]
          Length = 313

 Score = 55.8 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/294 (8%), Positives = 81/294 (27%), Gaps = 34/294 (11%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           ++    +L            +    +    +++GE IT  +    +          +  +
Sbjct: 30  MVIGVLLLFNILWFIAWLIPNDTGKAEKVASVSGEAITREEWLASM--------EEQHGR 81

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
            A+ EL+ E +     +  GI      ++        +   +     +  D         
Sbjct: 82  EALLELVNEKVMATAAQDYGIEVSDKEIDLELALVRSSRDGTEAALYTVDDA-------- 133

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                 +     +++          + EI A     +++   +   RT +  +  +    
Sbjct: 134 --RQREKIKAQLILEKVLTKDVVIEKEEIKAFYDDNESLYDVKDSYRTRIIVLNSSAEAE 191

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESD---LHPQFQNLL 250
                    +  +   +         + +         G   Y+   +        + + 
Sbjct: 192 ---------ETIKELEKGSSFEATARERSIDSATGNLGGDIGYISNGEPGVDANVAKAVS 242

Query: 251 KKSQNNTTNPYVTQKG-VEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHE 301
           K      ++P   + G    I++ +K          ++ +++ +    ++ +  
Sbjct: 243 KVEVGGWSSPLPLETGKTAIISVTEKVNGQTFSYEDVEGHINRELALEQLPQAV 296


>gi|330975098|gb|EGH75164.1| periplasmic folding chaperone [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 239

 Score = 55.8 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/173 (10%), Positives = 50/173 (28%), Gaps = 19/173 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++ +     I +  +   + +    +NGE I+  ++S+ +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGLIIALMAFTGIEAMFTATSNKQNAAEVNGEDISQNELSQAV 60

Query: 61  ALLK-----------------LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            + +                        L + A++ LI   L  Q    +  +F    ++
Sbjct: 61  DMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADAKFSFSDAALD 120

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
              +Q              F            Q+   Q +  +++        
Sbjct: 121 QQLLQTPEFQVDGKFSADRFDQVIRQLGYSRLQF--RQMLGQEMLIGQVRAGV 171


>gi|262274058|ref|ZP_06051870.1| peptidyl-prolyl cis-trans isomerase PpiC [Grimontia hollisae CIP
           101886]
 gi|262221868|gb|EEY73181.1| peptidyl-prolyl cis-trans isomerase PpiC [Grimontia hollisae CIP
           101886]
          Length = 92

 Score = 55.8 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 21/66 (31%)

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGV 267
              +  K     +K++        G         + PQF  +   ++  T +   T+ G 
Sbjct: 24  QLKKGAKFQTLAKKYSLCPSGKKGGDLGEFRRGQMVPQFDKVCFNAEILTPHIVKTKFGW 83

Query: 268 EYIAIC 273
             + + 
Sbjct: 84  HVVKVL 89


>gi|167043769|gb|ABZ08460.1| putative PPIC-type PPIASE domain protein [uncultured marine
           microorganism HF4000_APKG3D20]
          Length = 625

 Score = 55.8 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 12/129 (9%), Positives = 28/129 (21%), Gaps = 4/129 (3%)

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
           W  V+ N+   K     +E      +    +      +    +        Q    +  +
Sbjct: 497 WYYVISNEVYDKI---HLERKDFVARKIAASHVLVAFKGASRAKASITRTKQEAKARAEE 553

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYV 262
             ++             K +        G         +   F +          +    
Sbjct: 554 LRKQIVEGGKDFAEMASKNSDGPSASEGGDLGEFDFDGMAKPFSEAAFALEVGAVSVVVE 613

Query: 263 TQKGVEYIA 271
           T+ G   I 
Sbjct: 614 TEFGFHVIK 622


>gi|71652260|ref|XP_814791.1| peptidyl-prolyl cis-trans isomerase/rotamase [Trypanosoma cruzi
           strain CL Brener]
 gi|70879793|gb|EAN92940.1| peptidyl-prolyl cis-trans isomerase/rotamase, putative [Trypanosoma
           cruzi]
          Length = 117

 Score = 55.8 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 8/104 (7%), Positives = 26/104 (25%), Gaps = 1/104 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
            +           +         L     + +  + A+          +   + +     
Sbjct: 11  HLLIKFDGSRNCVSHRTGKSTADLTYDAALAELKQWAKRIADGEITFEDAARQRSDCGSY 70

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
            S G   +     +   F++  +  +    +    T+ G+  I 
Sbjct: 71  NSGGDLGFFGPGVMMKPFEDAARSLNVGEVSGVVRTESGLHIIK 114


>gi|315644393|ref|ZP_07897533.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus vortex
           V453]
 gi|315280270|gb|EFU43562.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus vortex
           V453]
          Length = 311

 Score = 55.8 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/302 (9%), Positives = 80/302 (26%), Gaps = 32/302 (10%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELI 81
           ++   I    +  S    S    +I    IT+ +    +             +  +  ++
Sbjct: 26  VLFSGIFSQEASPSLKDGSLAVASIQDRAITEDEWVDELK--------KRYGREMLMTML 77

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
                  E +  GI   +  V+      +R+ G        FL +        +  L ++
Sbjct: 78  NRQAVALEAKAKGIDITTAEVDAEIDVMSRSYG----SKERFLSEMENQLGITEAELRME 133

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
           + +  +++            +I A  +   +    +  +   +  +      NQ      
Sbjct: 134 TTYRMLLEKIATSDVYIEPQQIDAYLELYPDQFRPKKQLNLSMIEVASEDEANQAM---- 189

Query: 202 IKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDL---HPQFQNLLKKSQNNT 257
                +             + +  +      G+   + E D           L+    + 
Sbjct: 190 -----DRLENGEDFAALASEISLDEYTREEGGQIGLIEEDDPFLPPALLDAALELEPGDI 244

Query: 258 TNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE---AEYVKKLRSN--A 312
             P         + + D   +  +   +  +          +     +E  ++LR    A
Sbjct: 245 AGPISLTDTYAIVYLHDI--IEPKAPSEDKIREAVRKQLALEQSISLSELERQLREKYEA 302

Query: 313 II 314
            I
Sbjct: 303 RI 304


>gi|261330093|emb|CBH13077.1| PPIase, putative [Trypanosoma brucei gambiense DAL972]
          Length = 115

 Score = 55.8 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 7/77 (9%), Positives = 24/77 (31%), Gaps = 1/77 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +++  K ++              + +      S G   +    ++   F++ ++    
Sbjct: 36  DAIKELQKWSQRIASGEVSFEEAASQRSDCGSYASGGDLGFFSSGEMMKPFEDAVRALKI 95

Query: 255 NNTTNPYVTQKGVEYIA 271
            + +    T  G+  I 
Sbjct: 96  GDISPIVQTDSGLHIIK 112


>gi|251811182|ref|ZP_04825655.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|251805310|gb|EES57967.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus epidermidis
           BCM-HMP0060]
          Length = 322

 Score = 55.8 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/249 (13%), Positives = 69/249 (27%), Gaps = 18/249 (7%)

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           ++          L K   +K     D+  ++    +  +  G   +  S    +      
Sbjct: 49  KEQIANTSFSIVLNKVLADKYKDKVDTKDIDKDIKKEEKQYGGKDQFESMLKQQ-----G 103

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                   Q       K   + K    + EI        +      LI+    S     L
Sbjct: 104 MSLDDYKEQKKLSAYQKQLLLDKVNVSDKEIK-----ENSKKASHILIKVKSKSSDKEGL 158

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNL-L 250
            ++   +K  K  +E      K     +K +         G   Y+++  +   F+    
Sbjct: 159 SDKKAKEKAEKIQKEVEKNPNKFGEIAKKESMDSSSAKKDGSLGYVIKGQMVDSFEKALF 218

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH---EAEYVKK 307
           K  +   +    T  G   I            + K+ +  +    K++K      +  K+
Sbjct: 219 KLKEGEVSKVVKTDYGYHIIKAD---KETDFNSEKSNIKQKLIEEKVQKKPKLLTDAYKE 275

Query: 308 LRSNAIIHY 316
           L     + Y
Sbjct: 276 LLKEYKVDY 284


>gi|148225514|ref|NP_001084775.1| protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4
           (parvulin) [Xenopus laevis]
 gi|47125169|gb|AAH70686.1| MGC83096 protein [Xenopus laevis]
          Length = 127

 Score = 55.8 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 10/83 (12%), Positives = 25/83 (30%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------LLKKS 253
           ++ +A E      +      +++        G   ++    +   FQ+            
Sbjct: 46  KVMEAMEKLKSGVRFSEVATQYSED-KARQGGDLGWMTRGSMVGPFQDAAFALSVSTMDK 104

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
              T  P  T+ G   I +  ++
Sbjct: 105 PVYTDPPVKTKFGYHIIMVEGRK 127


>gi|157785591|ref|NP_001099127.1| protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4
           (parvulin) [Bos taurus]
 gi|254782279|sp|A6QPY8|PIN4_BOVIN RecName: Full=Peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4; AltName: Full=Parvulin-14; Short=Par14; AltName:
           Full=Peptidyl-prolyl cis-trans isomerase Pin4;
           Short=PPIase Pin4; AltName: Full=Rotamase Pin4
 gi|151556240|gb|AAI49560.1| PIN4 protein [Bos taurus]
 gi|296470836|gb|DAA12951.1| protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4
           (parvulin) [Bos taurus]
          Length = 131

 Score = 55.8 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT-- 258
           +I +A E      K      +++        G   ++    +   FQ        +    
Sbjct: 50  KILEAMEKLKSGMKFNEVAAQYSED-KARQGGDLGWMTRGSMVGPFQEAAFALPISVLDK 108

Query: 259 -----NPYVTQKGVEYIAICDKR 276
                 P  T+ G   I +  ++
Sbjct: 109 PVFTDPPVKTKFGYHIIMVEGRK 131


>gi|162450295|ref|YP_001612662.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Sorangium
           cellulosum 'So ce 56']
 gi|161160877|emb|CAN92182.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Sorangium
           cellulosum 'So ce 56']
          Length = 239

 Score = 55.8 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 10/95 (10%), Positives = 31/95 (32%), Gaps = 2/95 (2%)

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS-IGKAQY 236
            + +    + P  +        +  +   +++    K  + +++++ +       G    
Sbjct: 141 VMYKGSRRAPPTVERTKDEAKARATEAMTKAKADPSKFTDVVKEYSDEPGADKRGGDLGK 200

Query: 237 LLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYI 270
             +  + P+FQ    K      ++   T  G   I
Sbjct: 201 FPKGAMVPEFQAGLEKIKVGQVSDLVETPFGYHVI 235


>gi|12963653|ref|NP_075860.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Mus
           musculus]
 gi|20139259|sp|Q9QUR7|PIN1_MOUSE RecName: Full=Peptidyl-prolyl cis-trans isomerase NIMA-interacting
           1; AltName: Full=Peptidyl-prolyl cis-trans isomerase
           Pin1; Short=PPIase Pin1
 gi|6468200|dbj|BAA87037.1| PIN1 [Mus sp.]
 gi|6468202|dbj|BAA87038.1| PIN1 [Mus sp.]
 gi|12832817|dbj|BAB22270.1| unnamed protein product [Mus musculus]
 gi|12833994|dbj|BAB22743.1| unnamed protein product [Mus musculus]
 gi|26343949|dbj|BAC35631.1| unnamed protein product [Mus musculus]
 gi|54887364|gb|AAH38254.1| Protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1
           [Mus musculus]
 gi|74151907|dbj|BAE29739.1| unnamed protein product [Mus musculus]
 gi|74227721|dbj|BAE35702.1| unnamed protein product [Mus musculus]
 gi|148693178|gb|EDL25125.1| protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1,
           isoform CRA_b [Mus musculus]
          Length = 165

 Score = 55.8 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 8/106 (7%), Positives = 26/106 (24%), Gaps = 1/106 (0%)

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
             +    +       R   +         +  ++      ++ +       +   +F+  
Sbjct: 56  KVRCSHLLVKHSQSRRPSSWRQEKITRSKEEALELINGYIQKIKSGEEDFESLASQFSDC 115

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
               + G         +   F++          + P  T  G+  I
Sbjct: 116 SSAKARGDLGPFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHII 161


>gi|269986643|gb|EEZ92924.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Parvarchaeum acidiphilum ARMAN-4]
          Length = 91

 Score = 55.8 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 1/79 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQN 255
             Q       E   +        E+F+        G+  Y     +  +F+      ++ 
Sbjct: 13  KKQSLAYSILERINKGESFSKLAEEFSIDSSRRRGGELGYFGRGIMVKEFEKAAFSLNKG 72

Query: 256 NTTNPYVTQKGVEYIAICD 274
             + P  TQ G   I   D
Sbjct: 73  QISQPIKTQFGYHIIKRLD 91


>gi|254255307|ref|ZP_04948623.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa
           AUO158]
 gi|124901044|gb|EAY71794.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa
           AUO158]
          Length = 292

 Score = 55.8 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/282 (8%), Positives = 65/282 (23%), Gaps = 44/282 (15%)

Query: 36  WAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGI 95
            A +  +  T+NG  +   ++ + +           +    +Q L+   L +Q  E+ G+
Sbjct: 41  SADAGDVVATVNGVAVHRAELDEAM-----IGRQESMRPQVLQGLVARELLRQAAERDGL 95

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
                                                      A       +     +  
Sbjct: 96  GNTEPVRAA-------------------------------MRKARIDTENRLYIARHVST 124

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
               + ++     ++           + +    +   +    +    +       R    
Sbjct: 125 EPVTDTDVRRRYDEIAGQFGPYQYQVSRMTFTDEPTARFALALLGSGESFANVAARTHAT 184

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT-NPYVTQKGVEYIAICD 274
             + +  + K             +    P  Q +   +  + T  P           + D
Sbjct: 185 DVQTDWISFKTPPAEG-----RTQGLPLPLAQTIAAMNAGDITHTPVRAGDRFIVARLDD 239

Query: 275 KRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           +RD            +       + +   A  + +L   A I
Sbjct: 240 RRDAVVPSFAQASGAMRNALERKRADDAFAALIAQLAQKAAI 281


>gi|75773864|gb|AAI04654.1| PIN4 protein [Homo sapiens]
          Length = 141

 Score = 55.8 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------LLKKS 253
           +I +A E      +      +++        G   ++    +   FQ             
Sbjct: 60  KIMEAMEKLKSGMRFNEVAAQYSED-KARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDK 118

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
              T  P  T+ G   I +  ++
Sbjct: 119 PVFTDPPVKTKFGYHIIMVEGRK 141


>gi|311233706|gb|ADP86560.1| SurA domain protein [Desulfovibrio vulgaris RCH1]
          Length = 328

 Score = 55.8 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/306 (9%), Positives = 83/306 (27%), Gaps = 28/306 (9%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE------LEK 74
           VL +  ++        A+   +  T+NG  +    +              E      L  
Sbjct: 17  VLAVTLLLSAGGCADDALPPGVVATVNGHPVNMKLLQATHDAYAQSWTGAEGPSVEALRS 76

Query: 75  I---AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
                + +L+V+ L  Q++   G +     +     +           F + L +  +  
Sbjct: 77  QYGAVLADLVVQELVLQKLAAVGASVTDAELGAA--EAEVRGDYPEGMFEAALVEDYLDL 134

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
             +++ L  +       +     +      E+ +  +  +        +R ++      +
Sbjct: 135 EVWREMLRRRLALTKFAQVVLRSEVAISLEEVESWYRGHQGEFRLAARVRFIMVEGDTRE 194

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
                        A E   +                 +S  +   +    +   +Q  L 
Sbjct: 195 GVEAAAGAVASGAAPEEVEK-------------AFPGMSGNEL-LIRRDRIPAAWQKALA 240

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY--LSAQNTPTKIEKHEAEYVKKL 308
                  + P   +       + +         + AY  +  +    K++     +V++ 
Sbjct: 241 ALKPGGVSPPIAFEGRWVAFRLIESLPAQDMSVVDAYPVIERRLLEEKLDAAFDVWVERN 300

Query: 309 RSNAII 314
            + A +
Sbjct: 301 LAGAKV 306


>gi|218885390|ref|YP_002434711.1| hypothetical protein DvMF_0286 [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756344|gb|ACL07243.1| hypothetical protein DvMF_0286 [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 415

 Score = 55.8 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/287 (11%), Positives = 87/287 (30%), Gaps = 29/287 (10%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQ--------KINGELEKIAVQELIVETLKKQEIE 91
             +  T+N + IT   +     +  +         +         + +LIV+ L  Q + 
Sbjct: 40  EGVVATVNEQPITLRTLEAVHDMSSMSWSGHAPSVEQLQAQYGAVLSDLIVQELVAQALA 99

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
           +  I      V     +        A +F   L ++ I  + ++  L  +      ++  
Sbjct: 100 RENIAVSDGEVAEA--EAEVRGDYPAGEFEKSLVEEYIDLDLWRSRLRARIAMQKFMRLI 157

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                     E+       +       L R V F +     +      +       S   
Sbjct: 158 LRPTISIPLEEVETYYAAHR---QDYRLPRRVQFLVVAGPDKAAVDKARA-----LSLGG 209

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVE-Y 269
                 +  + +  + +V       +    L   + + L   +    +     + G + +
Sbjct: 210 AKPADVEAAQPSVTVREVK------MRRDRLPALWSKELAGLAPGQASAVKQGEWGYQSF 263

Query: 270 IAICDKRDLGGEIA-LKAYLSAQNTPTKIEKHEAEYVK-KLRSNAII 314
           + + +  +   E++     +       K+++  A +++ +LR  A I
Sbjct: 264 LLVGEIAEKQLELSHAYPLVERVLLERKMDEAYARWMEAELR-TARI 309


>gi|71417797|ref|XP_810661.1| peptidyl-prolyl cis-trans isomerase/rotamase [Trypanosoma cruzi
           strain CL Brener]
 gi|70875226|gb|EAN88810.1| peptidyl-prolyl cis-trans isomerase/rotamase, putative [Trypanosoma
           cruzi]
          Length = 117

 Score = 55.8 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 8/104 (7%), Positives = 26/104 (25%), Gaps = 1/104 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
            +           +         L     + +  + A+          +   + +     
Sbjct: 11  HLLIKFDGSRNCVSHRTGKSTADLTYDAALAELKQWAKRIADGDITFEDAARQRSDCGSY 70

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
            S G   +     +   F++  +  +    +    T+ G+  I 
Sbjct: 71  NSGGDLGFFGPGVMMKPFEDAARSLNVGEVSGVVRTESGLHIIK 114


>gi|94500758|ref|ZP_01307287.1| peptidyl-prolyl cis-trans isomerase C [Oceanobacter sp. RED65]
 gi|94427080|gb|EAT12061.1| peptidyl-prolyl cis-trans isomerase C [Oceanobacter sp. RED65]
          Length = 92

 Score = 55.8 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 9/74 (12%), Positives = 26/74 (35%), Gaps = 1/74 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN-NT 257
           +K  ++ ++   +        +++++       G      + D+   F +++ K      
Sbjct: 14  KKLAEELKQRLAKGEDFGKLAKQYSTCPSKKQGGNLGEFHKGDMVKAFDDVVFKRPILKV 73

Query: 258 TNPYVTQKGVEYIA 271
             P  T+ G   I 
Sbjct: 74  HGPIKTRFGYHLIK 87


>gi|21233477|ref|NP_639394.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66770441|ref|YP_245203.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21115325|gb|AAM43276.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575773|gb|AAY51183.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 322

 Score = 55.8 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 35/316 (11%), Positives = 82/316 (25%), Gaps = 41/316 (12%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRI---RTTINGEVITDGDISKRIA 61
           V T +S  ++ L     L +  I  + S ++    S +    TT+             + 
Sbjct: 22  VITEISCMLQSLCLSGALALGLIAGVPSAQAATADSGVSHSVTTV-------------LQ 68

Query: 62  LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
           + K      E   +A+ +L                 +           A        D +
Sbjct: 69  IGKQAFTAPEYRALALADL-------------PRGANPAGAADPAFVRAFADRRLLLDQA 115

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
             +  Q       +   A  +I  D ++            ++ A      +      L  
Sbjct: 116 RQVHLQDDPVVAVQLRQATDAILADAMQRRARTTAHIDAAQVQAQFNAHPHDYDEVRLSH 175

Query: 182 TVLFSIPDNKLQ-----NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQ 235
             +   P    +     +      R +  +             ++ +         G+  
Sbjct: 176 VFVALQPQGDARRGAPLSDAQALARAQQLKRQLDSGTPFEEVAKRESDDGSTAAEGGELS 235

Query: 236 YLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP 294
            +   ++   F   ++     + + P    +G   I +  +     E A       Q   
Sbjct: 236 SIFLRNVADVFAAPVQALGVGDVSAPVRGPEGYHLIRVDARIPATLETA-----RGQIEV 290

Query: 295 TKIEKHEAEYVKKLRS 310
              E+     +++LR 
Sbjct: 291 QLREQAATAALERLRQ 306


>gi|221116075|ref|XP_002158589.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 149

 Score = 55.8 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 7/125 (5%), Positives = 25/125 (20%), Gaps = 1/125 (0%)

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
               +                +    +   +   R   +         +  +       +
Sbjct: 21  YFNTETNESQWEKPDNEEFQVRASHLLVKHKGSRRPSSWKQNVITRTEEEALDIIKNYHK 80

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
           +            +  +      + G   +     +   F+        N  + P  +  
Sbjct: 81  QITSGKTTLAALAQSESDCSSAKNGGDLGFFGPGQMQKSFEEAAFALKINEMSGPVYSDS 140

Query: 266 GVEYI 270
           G+  I
Sbjct: 141 GIHLI 145


>gi|58264984|ref|XP_569648.1| transcriptional elongation regulator [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134109581|ref|XP_776905.1| hypothetical protein CNBC3960 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259585|gb|EAL22258.1| hypothetical protein CNBC3960 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57225880|gb|AAW42341.1| transcriptional elongation regulator, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 178

 Score = 55.8 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 8/92 (8%), Positives = 21/92 (22%), Gaps = 1/92 (1%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
            R    +I  ++ Q           +        +        +        G   +   
Sbjct: 83  WRNDKITITSDEAQAIIEQHIAYLQSLPPADLPKEFAKIASTESDCSSARKGGDLGWFGR 142

Query: 240 SDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYI 270
             +   F++    +     +    T  G+  I
Sbjct: 143 GQMQKPFEDATFNTPVGQLSGIVKTDSGIHVI 174


>gi|228475889|ref|ZP_04060599.1| foldase protein PrsA [Staphylococcus hominis SK119]
 gi|228270044|gb|EEK11514.1| foldase protein PrsA [Staphylococcus hominis SK119]
          Length = 319

 Score = 55.8 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 73/230 (31%), Gaps = 17/230 (7%)

Query: 91  EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
           +K     D+  ++    +  +  G   + F S L +QG+  + +K+   + +    ++ +
Sbjct: 70  DKYKDKVDTKRIDDDIKKEEKQYG-GKDQFESMLKQQGMTLDDYKEQKRLSAYQKQLLND 128

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
              +    ++ +       +  +                   + Q  V+K     +E   
Sbjct: 129 KIKVSDKEIKDDTKKASHILIKVKSDSDKEGLSDKKAKAKAEKIQKEVEKNPNKFDELAK 188

Query: 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEY 269
           +   D    +K          G   Y+++  +  +F + L K  +   ++   T+ G   
Sbjct: 189 KESMDSASAKK---------GGSLGYVIKGQMVDKFDKALFKLKEGQISDIVKTEYGYHI 239

Query: 270 IAICDKRDLGGEIALKAYLSAQNTPTKIE---KHEAEYVKKLRSNAIIHY 316
           I              K+ L  +    K++   K      K L     + Y
Sbjct: 240 IKAN---KEDDFNKQKSQLKTKIIEQKVQKNPKLLTNAYKDLLKEYNVDY 286


>gi|90577547|ref|ZP_01233358.1| peptidyl-prolyl cis-trans isomerase C [Vibrio angustum S14]
 gi|90440633|gb|EAS65813.1| peptidyl-prolyl cis-trans isomerase C [Vibrio angustum S14]
          Length = 108

 Score = 55.8 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 12/91 (13%), Positives = 24/91 (26%), Gaps = 16/91 (17%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF------------ 246
           ++   D  E   +  K     +K ++       G      +  + PQF            
Sbjct: 15  KELADDILEHLKKGAKFQELAKKHSTCPSGKKGGDLGEFRKGAMVPQFDKAVFSGKAIST 74

Query: 247 ----QNLLKKSQNNTTNPYVTQKGVEYIAIC 273
               +      +     P  T+ G   I + 
Sbjct: 75  SEALKKKNNNLRGLIPEPVKTKFGWHIIKVL 105


>gi|72392211|ref|XP_846906.1| peptidyl-prolyl cis-trans isomerase/rotamase [Trypanosoma brucei
           TREU927]
 gi|62175211|gb|AAX69357.1| peptidyl-prolyl cis-trans isomerase/rotamase, putative [Trypanosoma
           brucei]
 gi|70802936|gb|AAZ12840.1| peptidyl-prolyl cis-trans isomerase/rotamase, putative [Trypanosoma
           brucei brucei strain 927/4 GUTat10.1]
          Length = 115

 Score = 55.8 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 7/77 (9%), Positives = 24/77 (31%), Gaps = 1/77 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             +++  K ++              + +      S G   +    ++   F++ ++    
Sbjct: 36  DAIKELQKWSQRIASGEVSFEEAASQRSDCGSYASGGDLGFFSSGEMMKPFEDAVRALKI 95

Query: 255 NNTTNPYVTQKGVEYIA 271
            + +    T  G+  I 
Sbjct: 96  GDISPIVQTDSGLHIIK 112


>gi|307721945|ref|YP_003893085.1| SurA domain-containing protein [Sulfurimonas autotrophica DSM
           16294]
 gi|306980038|gb|ADN10073.1| SurA domain protein [Sulfurimonas autotrophica DSM 16294]
          Length = 278

 Score = 55.8 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 40/290 (13%), Positives = 84/290 (28%), Gaps = 31/290 (10%)

Query: 31  VSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEI 90
            ++ +  +   +   +  + IT  DI K +    L              LI + L++ EI
Sbjct: 11  FAFVNADVYDGVAVVVEDKAITLLDIQKEMQAEHLDAKKAS------DILIRKKLEELEI 64

Query: 91  EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
            K  I+  S  V     + A   GL+       + +Q   ++   +    Q +    +  
Sbjct: 65  AKRNISVSSAEVYDDIKKMAEANGLTISQLYDAIREQNGLNSEEFKEKIKQKLLSQKLYA 124

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
              +   +   +    +    +     +     +                          
Sbjct: 125 AIAMSSLSEPNDEEIKEYYKLHTDKFNHPESFSVIIYSAKDKSRLKEKTDNPMFYAPDIS 184

Query: 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQK--GV- 267
              +                      L  + + P+  N+L+K+  +   P ++    G  
Sbjct: 185 TQEQV---------------------LFYNKISPKLANILQKTPQDHFTPILSDGKGGFM 223

Query: 268 -EYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             YI    K       +LK  +       K E   ++Y  +LR NA I+ 
Sbjct: 224 SFYIKSVAKSKETDLKSLKPQIMNAIMADKREAVLSDYFARLRDNADINI 273


>gi|329314517|gb|AEB88930.1| Foldase protein prsA [Staphylococcus aureus subsp. aureus T0131]
          Length = 320

 Score = 55.8 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/309 (11%), Positives = 81/309 (26%), Gaps = 27/309 (8%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K++    V +    + + +  + A  S+        +I+     K   +     +    
Sbjct: 1   MKMINKLIVPVTASALLLGACGASATDSK-----ENTLISS----KAGDVTVADTMKKIG 51

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           +         E L K   +K     +   ++    +  +  G   +   +   +      
Sbjct: 52  KDQITNASFTEMLNKILADKYKNKVNDKKIDEQIEKMQKQYGGKDKFEKALQQQ-----G 106

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                           K     K    + EI        +      LI+          L
Sbjct: 107 LTADKYKENLRTAAYHKELLSDKIKISDSEIK-----EDSKKASHILIKVKSKKSDKEGL 161

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNL-L 250
            ++   QK  +  +E      K     +K +         G+  Y+L+      F+    
Sbjct: 162 DDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDKDFEKALF 221

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE---KHEAEYVKK 307
           K      +    +  G   I            + K  L  +    K++   K   +  K 
Sbjct: 222 KLKDGEVSEVVKSSFGYHIIKAD---KPTDFNSEKQSLKEKLVDQKVQKNPKLLTDAYKD 278

Query: 308 LRSNAIIHY 316
           L     + +
Sbjct: 279 LLKEYDVDF 287


>gi|332882479|ref|ZP_08450097.1| PPIC-type PPIASE domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332679539|gb|EGJ52518.1| PPIC-type PPIASE domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 705

 Score = 55.8 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/239 (8%), Positives = 53/239 (22%), Gaps = 2/239 (0%)

Query: 53  DGDISKRIALLKLQKINGELEKIAVQELIVETLK-KQEIEKSGITFDSNTVNYFFVQHAR 111
             +  + I  + + +     +  A +E I + L+ +          D+            
Sbjct: 230 KQEAYRNIQYIVVNEKPSAADTQAEKEAINKLLQPEIVFNNQTHANDTIAGFAQTKNVKE 289

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
                ++     L                      V           L   I  +     
Sbjct: 290 FVDRHSDTPYDTLFVSKEDLRSAYADTLFALPVGKVFGPYEEDGNLKLSRMIAKDPNGAV 349

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD-VS 230
             +      +    + P+     +    K      E++           + + +      
Sbjct: 350 KASHILIAYKGSQAATPNTTRTKEEAKAKAESLLAEAKAAGADFAALASENSDEPGANYR 409

Query: 231 IGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS 289
            G   +     +   F+  +  +   T     T  G   + + DK        +   + 
Sbjct: 410 GGDLGFFKRGAMVKPFEQFVFANPVGTIGIVETDFGYHVVKVTDKAPTVQLATITRKVE 468


>gi|292486653|ref|YP_003529523.1| peptidyl-prolyl cis-trans isomerase C [Erwinia amylovora CFBP1430]
 gi|292897890|ref|YP_003537259.1| peptidyl-prolyl cis-trans isomerase C [Erwinia amylovora ATCC
           49946]
 gi|291197738|emb|CBJ44833.1| peptidyl-prolyl cis-trans isomerase C [Erwinia amylovora ATCC
           49946]
 gi|291552070|emb|CBA19107.1| peptidyl-prolyl cis-trans isomerase C [Erwinia amylovora CFBP1430]
 gi|312170719|emb|CBX78981.1| peptidyl-prolyl cis-trans isomerase C [Erwinia amylovora ATCC
           BAA-2158]
          Length = 93

 Score = 55.8 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +K   D  E   +        +K ++       G      +  + P F + +      
Sbjct: 13  KEEKLALDLLEQLRQGADFEKLAKKHSTCPSGKKGGHLGEFKQGAMVPAFDKVVFSCPLI 72

Query: 256 NTTNPYVTQKGVEYIAIC 273
               P  TQ G   I + 
Sbjct: 73  EPQGPLHTQFGYHIIKVL 90


>gi|313219707|emb|CBY30627.1| unnamed protein product [Oikopleura dioica]
          Length = 158

 Score = 55.8 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 7/87 (8%), Positives = 21/87 (24%), Gaps = 1/87 (1%)

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
           +   +  +  +  +++  K   +         +   + +        G         +  
Sbjct: 68  WRNDNITISKEEALEQLNKYMVQIESGERSFADLASEVSDCSSAKRGGDLGPFGRGQMQR 127

Query: 245 QFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            F+           +    T  GV  I
Sbjct: 128 PFEEATFALKVGEMSGVVDTDSGVHII 154


>gi|157376732|ref|YP_001475332.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sediminis
           HAW-EB3]
 gi|157319106|gb|ABV38204.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sediminis
           HAW-EB3]
          Length = 92

 Score = 55.8 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 4/77 (5%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           ++  +D  +   +  K     +K ++       G      +  + P F  +         
Sbjct: 15  KELAEDIIKQLNKGAKFDVLAKKHSTCPSGKKGGSLGEFKKGQMVPPFDKV--CFTGELI 72

Query: 259 NP--YVTQKGVEYIAIC 273
            P    T+ G   I I 
Sbjct: 73  TPHLVKTKFGWHVIKIL 89


>gi|168041763|ref|XP_001773360.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675402|gb|EDQ61898.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 237

 Score = 55.8 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 13/129 (10%), Positives = 36/129 (27%), Gaps = 10/129 (7%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN 255
             +Q  +    +         +   + +        G   ++      P+F+    K+  
Sbjct: 41  DQLQLLLDIQRQVMQDGVDLSDLAAEHSICASKDVGGMLGWISLGRTVPEFEEAAFKAPL 100

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE--AEYVKKLRS--- 310
           N      T+ G   + +  +R+      L+     + +    +        +  +R    
Sbjct: 101 NKLVRVKTKHGWHLLQVLSEREASF---LRDIDVQELSTNMEDPEFLQNAQLLDVREPDE 157

Query: 311 --NAIIHYY 317
              A I  +
Sbjct: 158 IATASIEGF 166


>gi|330448427|ref|ZP_08312075.1| PPIC-type PPIASE domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492618|dbj|GAA06572.1| PPIC-type PPIASE domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 108

 Score = 55.5 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 12/91 (13%), Positives = 25/91 (27%), Gaps = 16/91 (17%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF------------ 246
           ++   D  E   +  K  +  +K ++       G      +  + PQF            
Sbjct: 15  KELADDILEQLKKGAKFQDLAKKHSTCPSGKKGGDLGEFRKGAMVPQFDKAVFSGNAIST 74

Query: 247 ----QNLLKKSQNNTTNPYVTQKGVEYIAIC 273
               +      +     P  T+ G   I + 
Sbjct: 75  SQALKMKNNNLRGLIPEPVKTKFGWHVIKVL 105


>gi|300714778|ref|YP_003739581.1| peptidyl-prolyl cis-trans isomerase C [Erwinia billingiae Eb661]
 gi|299060614|emb|CAX57721.1| Peptidyl-prolyl cis-trans isomerase C [Erwinia billingiae Eb661]
          Length = 93

 Score = 55.5 bits (131), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +K  +D      +        +K ++       G      +  + P F + +      
Sbjct: 13  KEEKLAQDILAELEKGADFEKLAKKHSTCPSGKKGGHLGEFKQGAMVPAFDKVVFSCPLI 72

Query: 256 NTTNPYVTQKGVEYIAIC 273
               P  TQ G   I + 
Sbjct: 73  VPYGPLHTQFGYHIIKVL 90


>gi|310766107|gb|ADP11057.1| Peptidyl-prolyl cis-trans isomerase C [Erwinia sp. Ejp617]
          Length = 93

 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +K   D  E   +        +K ++       G      +  + P F + +      
Sbjct: 13  KEEKLAFDLLEQLKQGADFEKLAKKHSTCPSGKKGGHLGEFKQGAMVPAFDKVVFSCPLI 72

Query: 256 NTTNPYVTQKGVEYIAIC 273
               P  TQ G   I + 
Sbjct: 73  EPQGPLHTQFGYHIIKVL 90


>gi|46580311|ref|YP_011119.1| hypothetical protein DVU1902 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449728|gb|AAS96378.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 312

 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/306 (9%), Positives = 83/306 (27%), Gaps = 28/306 (9%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE------LEK 74
           +L +  ++        A+   +  T+NG  +    +              E      L  
Sbjct: 1   MLAVTLLLSAGGCADDALPPGVVATVNGHPVNMKLLQATHDAYAQSWTGAEGPSVEALRS 60

Query: 75  I---AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
                + +L+V+ L  Q++   G +     +     +           F + L +  +  
Sbjct: 61  QYGAVLADLVVQELVLQKLAAVGASVTDAELGAA--EAEVRGDYPEGMFEAALVEDYLDL 118

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
             +++ L  +       +     +      E+ +  +  +        +R ++      +
Sbjct: 119 EVWREMLRRRLALTKFAQVVLRSEVAISLEEVESWYRGHQGEFRLAARVRFIMVEGDTRE 178

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
                        A E   +                 +S  +   +    +   +Q  L 
Sbjct: 179 GVEAAAGAVASGAAPEEVEK-------------AFPGMSGNEL-LIRRDRIPAAWQKALA 224

Query: 252 K-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY--LSAQNTPTKIEKHEAEYVKKL 308
                  + P   +       + +         + AY  +  +    K++     +V++ 
Sbjct: 225 ALKPGGVSPPIAFEGRWVAFRLIESLPAQDMSVVDAYPVIERRLLEEKLDAAFDVWVERN 284

Query: 309 RSNAII 314
            + A +
Sbjct: 285 LAGAKV 290


>gi|291535575|emb|CBL08687.1| hypothetical protein ROI_15630 [Roseburia intestinalis M50/1]
          Length = 347

 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/326 (7%), Positives = 75/326 (23%), Gaps = 47/326 (14%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI----- 68
               T  +L     + +++        +   T+NGE +  G  +      +         
Sbjct: 3   SRKITALLLSSAMALSVLTGCGGVNKDKTVATLNGEPVKLGVANFAARFGQAGADDFYTA 62

Query: 69  ------------------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
                                 +   +  L    + +  +++  ++   +         A
Sbjct: 63  YFGKNVWTSDLYGNGTTGQDNFKDSVMDSLEDMYVLQLHMDEYNVSITDDEKAAITAAAA 122

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
           +    +++D  + L         +     IQS     +         + E +  A     
Sbjct: 123 QFMEDNSKDAINALGATQEIVEEYLTLETIQSKMKAAIVAGADTNVTDEEAKTGAYSYVG 182

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS 230
            + T               ++ ++   V    ++ EE   ++       ++         
Sbjct: 183 ISKTT--------------HQDESGNTVDYTDEEKEELAAKVADFAKAAKEDGLDAAAED 228

Query: 231 IGK---AQYLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL 284
            G         + D          L    +   T+            +    D   +   
Sbjct: 229 AGYTVSTGTFTQEDDSVDDNLLAALKNLKEGEVTDLIDGDSSYFVARL----DKEVDEDA 284

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRS 310
                      + +    E +   + 
Sbjct: 285 TEETRQSIIEQRKDDLYDETLDGWKE 310


>gi|227485002|ref|ZP_03915318.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236999|gb|EEI87014.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
           51172]
          Length = 302

 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/315 (10%), Positives = 79/315 (25%), Gaps = 43/315 (13%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL----------------- 63
           + +  CI  + S       +     ++G+ I      K +                    
Sbjct: 12  LSLCTCICLLASCAKSKDEANSIAIVDGKSIAKQSFDKELEFYLAFYTKKYGDSYLESKN 71

Query: 64  -KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
            K +     L    +  +I + +   ++    I  D NT N       +  G      ++
Sbjct: 72  AKGKTNKEILRDDLLDSMIKDQVMLNDLADKKIEIDDNTANKLRSDMEKELGDKNSLKAN 131

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
                    +                      K  + E+       +  +   +      
Sbjct: 132 IKALNMSEADFSDVIFNDSIRKMHYEYFLTHNKIKDSEILQYYKANEELHKMYKY----- 186

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
               +  +  +    V+ +IK+  + R  L       +   S    +             
Sbjct: 187 --NVLVFDTKEACEEVKAKIKNQVDFRQALKSPVKNFDVINSDFVYID------------ 232

Query: 243 HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEA 302
            P       K ++  ++ +        + I            +  L  Q     ++    
Sbjct: 233 DPLLVKSKLKEKDKVSDIFEDNNKFMILMIN------SYNENENELLMQTKDKYLKDAYD 286

Query: 303 EYVKKLRSNAIIHYY 317
           +Y+ KL  +A I  +
Sbjct: 287 DYLNKLVKSAKIKVF 301


>gi|74228245|dbj|BAE23993.1| unnamed protein product [Mus musculus]
          Length = 165

 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 9/106 (8%), Positives = 27/106 (25%), Gaps = 1/106 (0%)

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
             +    +       RT  +         +  ++      ++ +       +   +F+  
Sbjct: 56  KVRCSHLLVKHSQSRRTSSWRQEKITRSKEEALELINGYIQKIKSGEEDFESLASQFSDC 115

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
               + G         +   F++          + P  T  G+  I
Sbjct: 116 SSAKARGDLGPFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHII 161


>gi|150866261|ref|XP_001385798.2| Peptidyl-prolyl cis-trans isomerase [Scheffersomyces stipitis CBS
           6054]
 gi|149387517|gb|ABN67769.2| Peptidyl-prolyl cis-trans isomerase [Scheffersomyces stipitis CBS
           6054]
          Length = 177

 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/124 (10%), Positives = 33/124 (26%), Gaps = 2/124 (1%)

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
             F        ++     +    +       +   +  PD    ++      +K  +   
Sbjct: 51  KHFRANGNKPVVQDDGKVRVSHLLIKNVQSRKPRSWKSPDGITLSRDEAISILKKHQARI 110

Query: 210 LRLP-KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGV 267
           L    K     E  +        G   +  +  + P+F+      +    ++   T  GV
Sbjct: 111 LNGEIKLSELAETESDCSSHSQGGDLGFFGKGQMQPKFEEAAYGLNVGEISDIIETDSGV 170

Query: 268 EYIA 271
             + 
Sbjct: 171 HILQ 174


>gi|222056243|ref|YP_002538605.1| hypothetical protein Geob_3161 [Geobacter sp. FRC-32]
 gi|221565532|gb|ACM21504.1| conserved hypothetical protein [Geobacter sp. FRC-32]
          Length = 580

 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/282 (8%), Positives = 74/282 (26%), Gaps = 33/282 (11%)

Query: 41  RIRTTI-NGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS 99
           R+  TI   + IT  D+ + +                      +     +    G   + 
Sbjct: 321 RVIATIKGDKPITVADLGEMLK--------------------QKFFHGVKEAAKGKRINE 360

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
             +   +                    +   +    +      ++   ++     +    
Sbjct: 361 QKMPALYDIFYARLYPMEAKKLGLDKTESYKNR--IKDFRDSLLFGMFIQKVVASEIKVT 418

Query: 160 EMEIPANKQKMKNITVREYLIRTV-LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
           + EI A+     +      +++   L     +  +      ++  + +  +         
Sbjct: 419 DEEIKAHYNAEIDEFSLPEMLKLRGLAFTRKDFAEAAMEKLQKGTEYQWLQANAEGLVPG 478

Query: 219 LEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGV-EYIAICDKRD 277
             +               +    L  + Q  +  ++      + T +G    I + +   
Sbjct: 479 DTEGLMSFSQTP------VTRKSLPEKMQEAIAAAKPGEYRLFETPEGFVYVIQVQEVIP 532

Query: 278 LGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
              +    +K  ++ +    K+ K   ++ +KLR    +  Y
Sbjct: 533 AKPQPLEQVKQSITKEVFNQKLNKSVEDWGQKLREAYKVQVY 574



 Score = 44.3 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 33/286 (11%), Positives = 66/286 (23%), Gaps = 51/286 (17%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL-----EKIAVQELIVETLKKQE 89
           S   +S    T+  +V+T  + ++ +A L  +    E        I +  LI   L  QE
Sbjct: 56  SPKFASVPVATVGDDVVTMEEFNQSLAALHQRAGEDESAGKKDYNIVLNRLINSKLIVQE 115

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
            E  G+                                                    ++
Sbjct: 116 AENMGLADLPEVKEK-------------------------------------------LE 132

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
           +   +       E      K        +    V      +   ++    K +  A ++ 
Sbjct: 133 DFPRMAIKEELKEQQIKDLKPAEADTERFYKEAVKELKVKSVRFDKEDDAKELARAVQAG 192

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY 269
               +  N L +                 +  L      +        +           
Sbjct: 193 GNFDELANSLIESGKATGVKEGEFV--KAKELLPQVAHIVSSLRVGGISPVVQVGPAYTI 250

Query: 270 IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN-AII 314
           + + D R    ++  +     Q    K  +   EY   L    A I
Sbjct: 251 LKLEDIRYPADDMEAREAAREQALALKQLQVLTEYNGMLVKKYAKI 296


>gi|326202453|ref|ZP_08192322.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987571|gb|EGD48398.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           papyrosolvens DSM 2782]
          Length = 363

 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/270 (11%), Positives = 83/270 (30%), Gaps = 11/270 (4%)

Query: 52  TDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
           T  D +++      ++   +    ++QE+ ++ +K +E        D + +     Q  +
Sbjct: 76  TKFDWNQKYQGSTAKEQIKKATLDSIQEIKIQLIKAKEAGVKLEKADLDNIEKAIDQRIQ 135

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
           N G S  +    L           + +  + +           K    + EI       K
Sbjct: 136 NAGGSRAEAEKQLKNDYGVSLADYKEVYKELVLSQKYMESERNKVKITDDEIKKQYDAHK 195

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGF-VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS 230
               +  +   ++ +             +K  K+  ++ L+  +    ++  A K  D  
Sbjct: 196 ADYDKVTVTHILVATQDLQTGAAFTEGKKKEAKEKADNLLKQIQQGADMQALAEKNSDDK 255

Query: 231 IGK-------AQYLLESDLHPQFQNLLKKSQN-NTTNPYVTQKGVEYIAICDKRDLGGEI 282
                          +  + PQF++    +     T    T  G   +   +KR+     
Sbjct: 256 GQDGKVNNKGVYTFSKGKMVPQFEDWAFANHKAGDTGVVETSYGYHVMK-FEKREETKFD 314

Query: 283 ALKAYLSAQNTPTKIE-KHEAEYVKKLRSN 311
            +K  + +    T+   +   + +   +  
Sbjct: 315 DVKDEIKSTILNTRFNDEFITKKLDSWKKE 344


>gi|121591689|ref|ZP_01678920.1| chaperone SurA [Vibrio cholerae 2740-80]
 gi|121546451|gb|EAX56679.1| chaperone SurA [Vibrio cholerae 2740-80]
          Length = 133

 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 49/115 (42%), Gaps = 8/115 (6%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE- 71
           +KL     + ++  +    ++        +   +N  VI   D+   +  +K      + 
Sbjct: 1   MKLWKPTLISVLSALTLFNAHAEPKQLDSVAVIVNSGVILQSDVDSALKTIKANAKQNKQ 60

Query: 72  -------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                  L +  +++LI++TL++QE ++ G+  D N +N    + A+N   + E 
Sbjct: 61  PLPQETVLREQVLEKLIIDTLQQQEADRIGVKIDDNRLNEAIKEIAKNNQQTQEQ 115


>gi|307171509|gb|EFN63350.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Camponotus
           floridanus]
          Length = 125

 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             Q +I +A E      K       ++      S G   ++    +   FQ+       +
Sbjct: 40  EKQSKILEALEKLKAGQKFNEVAATYSED-KARSGGDLGWMTRGSMVGPFQDAAFALPIS 98

Query: 257 -------TTNPYVTQKGVEYIAICDKR 276
                  T  P  T+ G   I +  K+
Sbjct: 99  NLASPIYTDPPVKTKFGYHIIMVEGKK 125


>gi|313607374|gb|EFR83765.1| foldase protein PrsA [Listeria monocytogenes FSL F2-208]
          Length = 257

 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/233 (8%), Positives = 63/233 (27%), Gaps = 5/233 (2%)

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
           K E+  +      +            +            K     + +    +       
Sbjct: 1   KDELYDAMKDKYGSEFVQQLTFEKVLSDKYKVSDEDVDKKFNEYKSQYGDQFSAVLAQSG 60

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           + +  F  +     + +    +   + + +        +             + + K+ E
Sbjct: 61  LTEKSFKSQLKYN-LLVQKATEANTDTSDKVLKDYYKTWQPDITVSHILVADENKAKEVE 119

Query: 207 ESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVT 263
           +      K  +  +++++      + G+        + P F+      K++ + + P  T
Sbjct: 120 QKLKDGAKFADLAKEYSTDTATKENDGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKT 179

Query: 264 QKGVEYIAICDKRDLGGEIALKAYLSA-QNTPTKIEKHEAEYVKKLRSNAIIH 315
           Q G   I +            K  + A         ++  + +K+    A + 
Sbjct: 180 QYGYHIIQMDKPATKTTFEKDKKAVKASYLESQLTTENMQKTLKEEFKKANVE 232


>gi|291540816|emb|CBL13927.1| hypothetical protein RO1_36800 [Roseburia intestinalis XB6B4]
          Length = 361

 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/326 (7%), Positives = 75/326 (23%), Gaps = 47/326 (14%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI----- 68
               T  +L     + +++        +   T+NGE +  G  +      +         
Sbjct: 17  SRKITALLLSSAMALSVLTGCGGVNKDKTVATLNGEPVKLGVANFAARFGQAGADDFYTA 76

Query: 69  ------------------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
                                 +   +  L    + +  +++  ++   +         A
Sbjct: 77  YFGKNVWTSDLYGNGTTGQDNFKDSVMDSLEDMYVLQLHMDEYNVSITDDEKAAITAAAA 136

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
           +    +++D  + L         +     IQS     +         + E +  A     
Sbjct: 137 QFMEDNSKDAINALGATQEIVEEYLTLETIQSKMKAAIVAGADTNVTDEEAKTGAYSYVG 196

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS 230
            + T               ++ ++   V    ++ EE   ++       ++         
Sbjct: 197 ISKTT--------------HQDESGNTVDYTDEEKEELAAKVADFAKAAKEDGLDAAAED 242

Query: 231 IGK---AQYLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL 284
            G         + D          L    +   T+            +    D   +   
Sbjct: 243 AGYTVSTGTFTQEDDSVDDNLLAALKNLKEGEVTDLIDGDSSYFVARL----DKEVDEDA 298

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRS 310
                      + +    E +   + 
Sbjct: 299 TEETRQSIIEQRKDDLYDETLDGWKE 324


>gi|229044062|ref|ZP_04191750.1| Foldase protein prsA 1 [Bacillus cereus AH676]
 gi|228725273|gb|EEL76542.1| Foldase protein prsA 1 [Bacillus cereus AH676]
          Length = 94

 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 4/78 (5%)

Query: 242 LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE 301
           +    +   K      ++P  T  G   I + DK++L     +K  +       +++   
Sbjct: 1   MKEFEEAAYKLDAGQVSDPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDIEQQRLQDTT 60

Query: 302 AEY----VKKLRSNAIIH 315
            ++    V  L  +A I 
Sbjct: 61  GKWKQQVVNDLLKDADIK 78


>gi|242016524|ref|XP_002428837.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting, putative
           [Pediculus humanus corporis]
 gi|212513573|gb|EEB16099.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting, putative
           [Pediculus humanus corporis]
          Length = 121

 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             Q +  +A        K     ++++      + G   ++    +   FQ+       +
Sbjct: 36  EKQGKCLEALGKLKEGMKFNEVAQQYSED-KARAGGDLGWMTRGSMVGPFQDAAFALPVS 94

Query: 257 -------TTNPYVTQKGVEYIAICDKR 276
                  T  P  T+ G   I +  K+
Sbjct: 95  SLSSPVFTDPPVKTKFGYHIIMVEGKK 121


>gi|292490958|ref|YP_003526397.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
           halophilus Nc4]
 gi|291579553|gb|ADE14010.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
           halophilus Nc4]
          Length = 250

 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/265 (11%), Positives = 73/265 (27%), Gaps = 26/265 (9%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              I+ EVIT     K + L           +  ++E++ + LK    ++ G++  ++ +
Sbjct: 4   IVRIDDEVITADAFLKTLKLTGR-------FEELIEEMVRDKLKVHAAKRQGVSLTTDEI 56

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                Q  R  GL      +             +   I+ ++ + +           +  
Sbjct: 57  QERADQFRRVYGLHRAKDMNQFLDAIGVSLDDFENFIIEILYQEKIMAKV-----CSDDA 111

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           I    +          L   VL S             K  +                ++ 
Sbjct: 112 IEEYFRMHSPKFESIELGHIVLDSEG-----------KAKEIFSLLEEEPELFPELAKEH 160

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKG--VEYIAICDKRDLG 279
           +        G    +L   L    ++ +  +       P+ +  G   E   +  K +  
Sbjct: 161 SIADTRDHHGMVGKVLRGSLQTDIESKVFNAPVGEPLGPFASSDGSFFEIFQVTAKHEAK 220

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEY 304
            +   K+ +        +     E+
Sbjct: 221 LDEETKSEVRRLVVDDWLSTQAQEH 245


>gi|223999243|ref|XP_002289294.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220974502|gb|EED92831.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 118

 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 4/85 (4%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS-IGKAQYLLESDLHPQFQNLLKKSQ 254
              ++     +E +    K  N  +  +      S  GK        + P F   +   +
Sbjct: 31  DAEKRLTDMKKEIKQDYNKFKNLAKMHSKCPSGKSAGGKLGKFKPGMMVPPFDKAIFAKE 90

Query: 255 ---NNTTNPYVTQKGVEYIAICDKR 276
                   P  T  G   I I ++ 
Sbjct: 91  SKVGEVIGPVQTNFGWHLIWIEERE 115


>gi|89072826|ref|ZP_01159383.1| peptidyl-prolyl cis-trans isomerase C [Photobacterium sp. SKA34]
 gi|89051348|gb|EAR56803.1| peptidyl-prolyl cis-trans isomerase C [Photobacterium sp. SKA34]
          Length = 108

 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/91 (13%), Positives = 24/91 (26%), Gaps = 16/91 (17%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF------------ 246
           ++   D  E   +  K     +K ++       G      +  + PQF            
Sbjct: 15  KELADDILEQLKKGAKFQELAKKHSTCPSGKKGGDLGEFRKGAMVPQFDKAVFSGKAIST 74

Query: 247 ----QNLLKKSQNNTTNPYVTQKGVEYIAIC 273
               +      +     P  T+ G   I + 
Sbjct: 75  SEALKKKNNNLRGLIPEPVKTKFGWHIIKVL 105


>gi|38679892|ref|NP_006214.2| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 isoform 1
           [Homo sapiens]
          Length = 156

 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------LLKKS 253
           +I +A E      +      +++        G   ++    +   FQ             
Sbjct: 75  KIMEAMEKLKSGMRFNEVAAQYSED-KARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDK 133

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
              T  P  T+ G   I +  ++
Sbjct: 134 PVFTDPPVKTKFGYHIIMVEGRK 156


>gi|331005209|ref|ZP_08328603.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium
           IMCC1989]
 gi|330420991|gb|EGG95263.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium
           IMCC1989]
          Length = 635

 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 68/235 (28%), Gaps = 15/235 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +         +     + I   +V + +    + +      ++G +IT+ D+   I
Sbjct: 1   MLQGMRNKTKGLTAVFLIGLLTIPLALVGVENLFYGSSTVGEAAEVDGTIITERDVQLAI 60

Query: 61  ALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
           +  + +  +               L +  +  L+  TL     EK  +TF    ++   V
Sbjct: 61  SRERQRLQSQFGENLPADFFTDERLRESVMSSLVQRTLMINIAEKGDMTFSDTEIDKTIV 120

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
                      D   FL       +    +     +  D++ N         +       
Sbjct: 121 DLPIFQLEGNFDQQRFLQGVRNLGHTPASFRT--LLKNDLLANQMQNAIVASDFITDKEI 178

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
             + +++ +      V   + +   +     ++     + ++ +         ++
Sbjct: 179 DSVVSLSRQTRDFSYVTLPLGELPQEMTVSDEEISTRYDLNKNQYLSTEEVAIEY 233



 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/260 (10%), Positives = 67/260 (25%), Gaps = 12/260 (4%)

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
           A  +    N  L       ++       +   S ++    T ++ +V          E  
Sbjct: 148 ASFRTLLKNDLLANQMQNAIVASDFITDKEIDSVVSLSRQTRDFSYVTL-----PLGELP 202

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI---PANKQKMKNITVRE 177
                        +           +V      L   ++E +I       Q+  +  V  
Sbjct: 203 QEMTVSDEEISTRYDLNKNQYLSTEEVAIEYIELNVASIEKDITITDEAIQQQYDSIVAS 262

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQY 236
           Y   T   +       +    Q++I   +E             +++       + G    
Sbjct: 263 YNATTQREAAHIMIEGDNEAAQQKIISVKEQLASGADFSALASEYSDDFGTRDNGGNLGV 322

Query: 237 LLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICD--KRDLGGEIALKAYLSAQNT 293
                    F+  L   ++   +          +I +    ++      + K  + ++  
Sbjct: 323 SAGDGFPEAFEEALLSLTEGQVSEAVEIDGATHFIKLIALTEKTAPTFDSQKIKIESELK 382

Query: 294 PTKIEKHEAEYVKKLRSNAI 313
             + E+     ++ L   A 
Sbjct: 383 RAQAEEQFILDLQTLEELAY 402


>gi|300175738|emb|CBK21281.2| unnamed protein product [Blastocystis hominis]
          Length = 155

 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%)

Query: 219 LEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            EK +        G   +     +   F++   +      +N   T  GV  I
Sbjct: 14  AEKESDCSSAKRGGDLGFFKRGQMQKPFEDCAFRLKVGEISNIIETDSGVHII 66


>gi|148657502|ref|YP_001277707.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseiflexus sp.
           RS-1]
 gi|148569612|gb|ABQ91757.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseiflexus sp.
           RS-1]
          Length = 520

 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/215 (6%), Positives = 48/215 (22%), Gaps = 22/215 (10%)

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
             E  +           H       + +    ++     +     +             +
Sbjct: 250 YDEYVNEMRRVDPQRRIHLTLDDFRRGLSNQFLRQALTRRVQEQLVPDSTFTPSADPSAI 309

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV-----S 230
               I   +        + +       +   E+ L   +      + A +  +      +
Sbjct: 310 ETRHILLKVTVPITATEEEREQAFAARRAEAEALLAEARAAADFGELARERSEDYNTRAA 369

Query: 231 IGKAQYLLESD--------LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEI 282
            G      +                 +   S+N    P  T  G   + +  +R +    
Sbjct: 370 GGALPSFDKDGKTPDGTQIDPALVAAIANASENEIVGPVRTSFGWHIVQLV-RRTVDSRE 428

Query: 283 ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
                  A        +    ++++ R+   +  +
Sbjct: 429 TQLNRARA--------EAFERWLEEQRAAVSVQRF 455


>gi|255690565|ref|ZP_05414240.1| peptidyl-prolyl cis-trans isomerase [Bacteroides finegoldii DSM
           17565]
 gi|260624026|gb|EEX46897.1| peptidyl-prolyl cis-trans isomerase [Bacteroides finegoldii DSM
           17565]
          Length = 515

 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/278 (6%), Positives = 65/278 (23%), Gaps = 38/278 (13%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSG 94
           ++A  + +   +NG  ++  +                                       
Sbjct: 18  AFAQENPVLMRVNGREVSRSEFE------------------------------YSYHHYR 47

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
                +     +           E   +            ++   I+ +   +V      
Sbjct: 48  AGGGRDLSPKEYALLFSQAIQKVEAAKAIRLDTTAAFRKQQEENRIKLMEDCLVDKQ--- 104

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
                     + ++        +  +  +   +P          +K   D+    +R   
Sbjct: 105 --TVDSCVRVSYQKMALKARTGQVQVMQIFKYLPQTITSRHLEEEKARMDSIYQAIRNQP 162

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICD 274
             +          D        L  +            S+   + P+ T  G+  + + D
Sbjct: 163 GLDFSALVKCYSDDRQNRWIGGLQTT--VEFENIAFALSKGEISEPFFTPAGIHILKVMD 220

Query: 275 KRDLGGEIALKAYLSAQNT-PTKIEKHEAEYVKKLRSN 311
           +++L     +   +  +        +   + +++L+  
Sbjct: 221 RKELPVYEDVVDGIVQRILHKEIRNQGIGKVIERLKRE 258


>gi|82751495|ref|YP_417236.1| peptidyl-prolyl cis-isomerase [Staphylococcus aureus RF122]
 gi|258423118|ref|ZP_05686012.1| peptidyl-prolyl cis-isomerase [Staphylococcus aureus A9635]
 gi|283770925|ref|ZP_06343817.1| foldase prsA [Staphylococcus aureus subsp. aureus H19]
 gi|123548081|sp|Q2YTZ6|PRSA_STAAB RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|82657026|emb|CAI81463.1| probable peptidyl-prolyl cis-isomerase [Staphylococcus aureus
           RF122]
 gi|257846682|gb|EEV70702.1| peptidyl-prolyl cis-isomerase [Staphylococcus aureus A9635]
 gi|283461072|gb|EFC08162.1| foldase prsA [Staphylococcus aureus subsp. aureus H19]
 gi|283471112|emb|CAQ50323.1| foldase protein PrsA [Staphylococcus aureus subsp. aureus ST398]
 gi|298695109|gb|ADI98331.1| probable peptidyl-prolyl cis-isomerase [Staphylococcus aureus
           subsp. aureus ED133]
          Length = 320

 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/309 (11%), Positives = 86/309 (27%), Gaps = 27/309 (8%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K++    V +    + + +  + A  S+        +I+       +A    +    ++
Sbjct: 1   MKMINKLIVPVTASALLLGACGASATDSK-----ENTLISSKAGDVTVADTMKKIGKDQI 55

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
              +  E++ + L     +K     +   ++    +  +  G   +   +   +      
Sbjct: 56  ANASFTEMLNKIL----ADKYKNKVNDKKIDEQIEKMQKQYGGKDKFEKALQQQ-----G 106

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                           K     K    + EI        +      LI+          L
Sbjct: 107 LTADKYKENLRTAAYHKELLSDKIKISDSEIK-----EDSKKASHILIKVKSKKSDKEGL 161

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNL-L 250
            ++   QK  +  +E      K     +K +         G+  Y+L+      F+    
Sbjct: 162 DDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDKDFEKALF 221

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE---KHEAEYVKK 307
           K      ++   +  G   I            + K  L  +    K++   K   +  K 
Sbjct: 222 KLKDGEVSDVVKSSFGYHIIKAD---KPTDFNSEKQSLKEKLVDQKVQKNPKLLTDAYKD 278

Query: 308 LRSNAIIHY 316
           L     + +
Sbjct: 279 LLKEYDVDF 287


>gi|269104517|ref|ZP_06157213.1| peptidyl-prolyl cis-trans isomerase PpiC [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161157|gb|EEZ39654.1| peptidyl-prolyl cis-trans isomerase PpiC [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 108

 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/91 (13%), Positives = 25/91 (27%), Gaps = 16/91 (17%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF------------ 246
           ++   D  E   +  K  +  +K ++       G      +  + PQF            
Sbjct: 15  KELADDILEQLKKGAKFQDLAKKHSTCPSGKKGGDLGEFRKGAMVPQFDKAVFSGKAIST 74

Query: 247 ----QNLLKKSQNNTTNPYVTQKGVEYIAIC 273
               +      +     P  T+ G   I + 
Sbjct: 75  SQALKLKNNNLRGLIPEPVKTKFGWHVIKVL 105


>gi|116788796|gb|ABK25005.1| unknown [Picea sitchensis]
 gi|116790870|gb|ABK25769.1| unknown [Picea sitchensis]
          Length = 123

 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/112 (11%), Positives = 29/112 (25%), Gaps = 1/112 (0%)

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
             ++ A+   +K+   R                     V +     EE      K  +  
Sbjct: 8   SQKVRASHLLIKHEGSRRPSSWQDPDGRRIKATTRDAAVAQLSALREEIVSGRAKFEDLA 67

Query: 220 EKFASKIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEYI 270
            +++        G         +   F++          ++   T+ GV  I
Sbjct: 68  ARYSDCKSAKKGGDLGPFGRGQMQKPFEDATYLLKVGEISDIVDTESGVHII 119


>gi|168052231|ref|XP_001778554.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162670008|gb|EDQ56584.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 119

 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 7/76 (9%), Positives = 18/76 (23%), Gaps = 1/76 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             V +  +   +         +   K +        G   +     +   F+        
Sbjct: 40  DAVAQLQQFKSDIESGKSTLADLASKNSDCSSAKRGGDLGWFGRGQMQEPFEKAAFALKV 99

Query: 255 NNTTNPYVTQKGVEYI 270
              ++   T+ G   I
Sbjct: 100 GELSDIIDTESGSHII 115


>gi|241153259|ref|XP_002407024.1| peptidyl-prolyl cis-trans isomerase, putative [Ixodes scapularis]
 gi|215494006|gb|EEC03647.1| peptidyl-prolyl cis-trans isomerase, putative [Ixodes scapularis]
          Length = 176

 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/109 (9%), Positives = 22/109 (20%), Gaps = 1/109 (0%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                     +       R   +         +  +       E+             +F
Sbjct: 64  AKGQVWCSHLLVKHRDSRRPSSWREEKITRSKEEALDIIKGYREQIASGKATFEELATQF 123

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
           +      + G         +   F+      +    + P  T  GV  I
Sbjct: 124 SDCSSAKNKGDLGTFGRGAMQKPFEEAAFALNVGELSEPVFTDSGVHLI 172


>gi|15924831|ref|NP_372365.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15927415|ref|NP_374948.1| hypothetical protein SA1659 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21283511|ref|NP_646599.1| hypothetical protein MW1782 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486658|ref|YP_043879.1| putative peptidyl-prolyl cis-isomerase [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|57650630|ref|YP_186723.1| protein export protein PrsA, putative [Staphylococcus aureus subsp.
           aureus COL]
 gi|87162356|ref|YP_494473.1| foldase protein PrsA precursor [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195663|ref|YP_500469.1| protein export protein PrsA [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150394374|ref|YP_001317049.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Staphylococcus
           aureus subsp. aureus JH1]
 gi|151221945|ref|YP_001332767.1| peptidyl-prolyl cis/trans-isomerase [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156980157|ref|YP_001442416.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|161510056|ref|YP_001575715.1| peptidylprolyl isomerase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142176|ref|ZP_03566669.1| peptidylprolyl isomerase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253315172|ref|ZP_04838385.1| foldase protein PrsA precursor [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|253732497|ref|ZP_04866662.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|255006629|ref|ZP_05145230.2| foldase protein PrsA precursor [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257793800|ref|ZP_05642779.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus A9781]
 gi|258413737|ref|ZP_05682010.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus A9763]
 gi|258420756|ref|ZP_05683695.1| foldase prsA [Staphylococcus aureus A9719]
 gi|258438417|ref|ZP_05689701.1| peptidyl-prolyl cis/trans-isomerase [Staphylococcus aureus A9299]
 gi|258443862|ref|ZP_05692201.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus A8115]
 gi|258447317|ref|ZP_05695464.1| peptidylprolyl isomerase [Staphylococcus aureus A6300]
 gi|258448200|ref|ZP_05696327.1| peptidyl-prolyl cis/trans-isomerase [Staphylococcus aureus A6224]
 gi|258452669|ref|ZP_05700668.1| foldase prsA [Staphylococcus aureus A5948]
 gi|258453367|ref|ZP_05701350.1| foldase prsA [Staphylococcus aureus A5937]
 gi|262052668|ref|ZP_06024860.1| hypothetical protein SA930_0804 [Staphylococcus aureus 930918-3]
 gi|269203478|ref|YP_003282747.1| protein export protein PrsA, putative [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282895139|ref|ZP_06303358.1| foldase prsA [Staphylococcus aureus A8117]
 gi|282924172|ref|ZP_06331847.1| foldase prsA [Staphylococcus aureus A9765]
 gi|282928579|ref|ZP_06336178.1| foldase prsA [Staphylococcus aureus A10102]
 gi|284024887|ref|ZP_06379285.1| protein export protein PrsA, putative [Staphylococcus aureus subsp.
           aureus 132]
 gi|294850269|ref|ZP_06791004.1| foldase prsA [Staphylococcus aureus A9754]
 gi|295406147|ref|ZP_06815955.1| foldase prsA [Staphylococcus aureus A8819]
 gi|296276027|ref|ZP_06858534.1| protein export protein PrsA, putative [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207443|ref|ZP_06923880.1| peptidyl-prolyl cis-trans isomerase [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297244929|ref|ZP_06928806.1| foldase prsA [Staphylococcus aureus A8796]
 gi|300911528|ref|ZP_07128973.1| peptidyl-prolyl cis-trans isomerase [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304380557|ref|ZP_07363232.1| peptidyl-prolyl cis-trans isomerase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|46396696|sp|P60747|PRSA_STAAM RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|46396697|sp|P60748|PRSA_STAAN RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|46396698|sp|P60749|PRSA_STAAW RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|56749190|sp|Q6G894|PRSA_STAAS RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|81694206|sp|Q5HET4|PRSA_STAAC RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|122540695|sp|Q2G2S6|PRSA_STAA8 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|123485269|sp|Q2FFQ5|PRSA_STAA3 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|189037914|sp|A7X3U8|PRSA_STAA1 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|189037915|sp|A6U2U4|PRSA_STAA2 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|189037916|sp|A6QI23|PRSA_STAAE RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|189037917|sp|A8YY10|PRSA_STAAT RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|13701634|dbj|BAB42927.1| prsA [Staphylococcus aureus subsp. aureus N315]
 gi|14247613|dbj|BAB58003.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|21204952|dbj|BAB95647.1| prsA [Staphylococcus aureus subsp. aureus MW2]
 gi|49245101|emb|CAG43567.1| putative peptidyl-prolyl cis-isomerase [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|57284816|gb|AAW36910.1| protein export protein PrsA, putative [Staphylococcus aureus subsp.
           aureus COL]
 gi|87128330|gb|ABD22844.1| foldase protein PrsA precursor [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203221|gb|ABD31031.1| protein export protein PrsA, putative [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|149946826|gb|ABR52762.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Staphylococcus
           aureus subsp. aureus JH1]
 gi|150374745|dbj|BAF68005.1| peptidyl-prolyl cis/trans-isomerase [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156722292|dbj|BAF78709.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|160368865|gb|ABX29836.1| peptidylprolyl isomerase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253723778|gb|EES92507.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|257787772|gb|EEV26112.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus A9781]
 gi|257839524|gb|EEV63995.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus A9763]
 gi|257843360|gb|EEV67770.1| foldase prsA [Staphylococcus aureus A9719]
 gi|257848461|gb|EEV72452.1| peptidyl-prolyl cis/trans-isomerase [Staphylococcus aureus A9299]
 gi|257851268|gb|EEV75211.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus A8115]
 gi|257853904|gb|EEV76860.1| peptidylprolyl isomerase [Staphylococcus aureus A6300]
 gi|257858439|gb|EEV81315.1| peptidyl-prolyl cis/trans-isomerase [Staphylococcus aureus A6224]
 gi|257859644|gb|EEV82493.1| foldase prsA [Staphylococcus aureus A5948]
 gi|257864459|gb|EEV87204.1| foldase prsA [Staphylococcus aureus A5937]
 gi|259159417|gb|EEW44469.1| hypothetical protein SA930_0804 [Staphylococcus aureus 930918-3]
 gi|262075768|gb|ACY11741.1| protein export protein PrsA, putative [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269941312|emb|CBI49709.1| putative peptidyl-prolyl cis-isomerase [Staphylococcus aureus
           subsp. aureus TW20]
 gi|282589788|gb|EFB94873.1| foldase prsA [Staphylococcus aureus A10102]
 gi|282592967|gb|EFB97969.1| foldase prsA [Staphylococcus aureus A9765]
 gi|282762483|gb|EFC02624.1| foldase prsA [Staphylococcus aureus A8117]
 gi|285817521|gb|ADC38008.1| Foldase protein PrsA precursor [Staphylococcus aureus 04-02981]
 gi|294822885|gb|EFG39319.1| foldase prsA [Staphylococcus aureus A9754]
 gi|294969144|gb|EFG45165.1| foldase prsA [Staphylococcus aureus A8819]
 gi|296887906|gb|EFH26802.1| peptidyl-prolyl cis-trans isomerase [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297178009|gb|EFH37257.1| foldase prsA [Staphylococcus aureus A8796]
 gi|300887160|gb|EFK82360.1| peptidyl-prolyl cis-trans isomerase [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|302751650|gb|ADL65827.1| peptidylprolyl isomerase, PrsA [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340886|gb|EFM06811.1| peptidyl-prolyl cis-trans isomerase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|312830213|emb|CBX35055.1| PPIC-type PPIASE domain protein [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315130515|gb|EFT86501.1| peptidylprolyl isomerase [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315196811|gb|EFU27155.1| peptidylprolyl isomerase [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320141309|gb|EFW33154.1| PPIC-type PPIASE domain protein [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320143563|gb|EFW35343.1| PPIC-type PPIASE domain protein [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329727671|gb|EGG64127.1| putative foldase protein PrsA [Staphylococcus aureus subsp. aureus
           21172]
 gi|329729514|gb|EGG65916.1| PPIC-type PPIASE domain protein [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329732962|gb|EGG69306.1| PPIC-type PPIASE domain protein [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 320

 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/309 (11%), Positives = 85/309 (27%), Gaps = 27/309 (8%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K++    V +    + + +  + A  S+        +I+       +A    +    ++
Sbjct: 1   MKMINKLIVPVTASALLLGACGASATDSK-----ENTLISSKAGDVTVADTMKKIGKDQI 55

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
              +  E++ + L     +K     +   ++    +  +  G   +   +   +      
Sbjct: 56  ANASFTEMLNKIL----ADKYKNKVNDKKIDEQIEKMQKQYGGKDKFEKALQQQ-----G 106

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                           K     K    + EI        +      LI+          L
Sbjct: 107 LTADKYKENLRTAAYHKELLSDKIKISDSEIK-----EDSKKASHILIKVKSKKSDKEGL 161

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNL-L 250
            ++   QK  +  +E      K     +K +         G+  Y+L+      F+    
Sbjct: 162 DDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDKDFEKALF 221

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE---KHEAEYVKK 307
           K      +    +  G   I            + K  L  +    K++   K   +  K 
Sbjct: 222 KLKDGEVSEVVKSSFGYHIIKAD---KPTDFNSEKQSLKEKLVDQKVQKNPKLLTDAYKD 278

Query: 308 LRSNAIIHY 316
           L     + +
Sbjct: 279 LLKEYDVDF 287


>gi|226323667|ref|ZP_03799185.1| hypothetical protein COPCOM_01442 [Coprococcus comes ATCC 27758]
 gi|225207851|gb|EEG90205.1| hypothetical protein COPCOM_01442 [Coprococcus comes ATCC 27758]
          Length = 347

 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/311 (8%), Positives = 75/311 (24%), Gaps = 36/311 (11%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK----- 67
           +K      +L + CI  +    S          +  E +T  D++   A  +  +     
Sbjct: 1   MKKRVVACILAVACIASLNGCGSKFNGQDTVVEVGDEKVT-ADVANFFARYQQAQFETTY 59

Query: 68  ------------------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
                                  +   +  L    +  +  +   ++   +         
Sbjct: 60  SSYLGDDFWGKEVTDGKTYEENYKDSIMDSLEEMYILDEHKDDYKVSLSDDEEKSIEDAA 119

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
            + T  +       +           + L +Q      +  D      + E      +  
Sbjct: 120 KKFTDSNDSAAKDAVSGDEKTVKKVLELLTLQKKMETAMTADVDTNVSDEEAAQKKLQYV 179

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
           + +   +    ++      D     +  V+K+ +D ++                +     
Sbjct: 180 LFSTKTKGSDGKS-----TDMSDDEKAEVKKKAEDFQKDAASAEDFSVFATAVGASAT-- 232

Query: 230 SIGKAQYLLESDLHPQ--FQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY 287
                 +  ++    +   +   K  +   T+      G     +    D       K  
Sbjct: 233 ---DLTFDSDTTSPNEDLIKAADKLKEGEVTDVIEADNGYYVAKVVSLLDRDATDTKKES 289

Query: 288 LSAQNTPTKIE 298
           + +Q    + +
Sbjct: 290 IVSQRKSDQYQ 300


>gi|213405975|ref|XP_002173759.1| peptidyl-prolyl cis-trans isomerase pin1 [Schizosaccharomyces
           japonicus yFS275]
 gi|212001806|gb|EEB07466.1| peptidyl-prolyl cis-trans isomerase pin1 [Schizosaccharomyces
           japonicus yFS275]
          Length = 179

 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 7/97 (7%), Positives = 24/97 (24%), Gaps = 1/97 (1%)

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKA 234
                 R   +   +     +          ++ R           + +        G  
Sbjct: 79  KHNQSRRPSSWKEANITRSKEEAYALAKNFLQQLRSGAVTMSELASRESDCSSAKRGGDL 138

Query: 235 QYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            +   +++   F++     + N  ++   +  G   I
Sbjct: 139 GFFGRNEMQKPFEDAAFALNPNQFSDIVESSSGFHII 175


>gi|85702071|ref|NP_001028940.1| peptidylprolyl cis/trans isomerase, NIMA-interacting 1, pseudogene
           1 [Mus musculus]
 gi|74208417|dbj|BAE26396.1| unnamed protein product [Mus musculus]
 gi|148695780|gb|EDL27727.1| mCG20568 [Mus musculus]
 gi|187955818|gb|AAI47364.1| Peptidylprolyl cis/trans isomerase, NIMA-interacting 1-like [Mus
           musculus]
 gi|187956101|gb|AAI47363.1| Peptidylprolyl cis/trans isomerase, NIMA-interacting 1-like [Mus
           musculus]
          Length = 159

 Score = 55.5 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 25/103 (24%), Gaps = 1/103 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +       R   +         +  ++       + +       +   +F+     
Sbjct: 53  CSHLLVKHSQSRRPSSWRQEKITRSKEEALELINGYIRKIKSGEEDFESLASQFSDCSSA 112

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            + G         +   F++          + P  T+ G+  I
Sbjct: 113 KARGDLGAFSRGQMEKPFEDASFALRTGEMSGPVFTESGIHII 155


>gi|298368785|ref|ZP_06980103.1| peptidyl-prolyl cis-trans isomerase [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282788|gb|EFI24275.1| peptidyl-prolyl cis-trans isomerase [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 610

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 76/262 (29%), Gaps = 11/262 (4%)

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            + +  ++ Q +   L+ +     IV  ++  ++        +     F  +        
Sbjct: 131 DQFVEEIRDQFLFQNLQNLVQNGTIVSDVQAAQLVNIAQATRTVRSVTFNPEAFAGQIKV 190

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            +            D    Q + I+ +   +       K    + E+        +    
Sbjct: 191 DDAILQRYYDANKKDYIIPQAVKIELV--ALTTQALADKQTVSDAELRQ----AFDKLPP 244

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP--KDCNKLEKFASKI-HDVSIGK 233
              I  +LF +  +    +    K   +   + ++          ++++       + G 
Sbjct: 245 RREIAHILFPVAQDASAEERAAAKAEAEKVLAMVKAKPSDFPALAKQYSKDPASASNGGN 304

Query: 234 AQYLLE-SDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ 291
             ++ +   L  +F+N      +   +N   T  G   I I + +D       KA L  +
Sbjct: 305 LGFMPKDGGLGAEFENAAFSMQKGEISNVVQTAYGYHIIKILNIQDKPVFEQEKAELEKE 364

Query: 292 NTPTKIEKHEAEYVKKLRSNAI 313
               K         +KL   A 
Sbjct: 365 LKLKKAAAGFNAAKEKLGEAAF 386



 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/146 (10%), Positives = 41/146 (28%), Gaps = 1/146 (0%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +F ++  +         LI    V           S     +  + I+D D++  +  ++
Sbjct: 1   MFHTVEKYKGPAQILLGLIALTFVGFGVSTVANPDSDYIVKVGNQKISDHDLNLAMQNIQ 60

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                 +      Q L+      Q  ++ GI      +    V        + +   + L
Sbjct: 61  AS-GGEQPRDAVFQSLLQRAYLTQGAKQMGIAVSQEQIKQIIVDDPSFHDANGKFSQALL 119

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKN 150
            +        +     +     + +N
Sbjct: 120 TQYLNQRRMSEDQFVEEIRDQFLFQN 145


>gi|91218479|ref|ZP_01255419.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Psychroflexus
           torquis ATCC 700755]
 gi|91183360|gb|EAS69763.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Psychroflexus
           torquis ATCC 700755]
          Length = 704

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/280 (10%), Positives = 74/280 (26%), Gaps = 21/280 (7%)

Query: 50  VITDGDISKRIALLKLQKINGELEK-----------IAVQELIVETLKKQEIEKSGITFD 98
            +T  DI   I + K +                         +++ + K   ++     +
Sbjct: 210 EVTKSDIQNYINVHKERFQQDAKRNLEYVYFEETPSEEDNSFVLDEVTKLTTDEKVEQSE 269

Query: 99  SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGN 158
             +             + +E   +                 ++    DV    +  +   
Sbjct: 270 GLSNFNTTDNVQEFIAVHSETPYNDNYTFEYNMKGEFALAILELDVNDVYGPYYENESYK 329

Query: 159 LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
           +   +   ++     T    +               +          +  R    K    
Sbjct: 330 ISKLVERTQKADSVKTSHILVTYNGSRVDASVTRTKEEAKVLADSLTDVVRRNSDKFAEL 389

Query: 219 LEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT-NPYVTQKGVEYIAICDKR 276
             +F+S      + G+  ++    L P+F + +       +     T  G   I + D+ 
Sbjct: 390 AGEFSSDRQSAENGGQLNWITYGALVPEFNDYVFDEAKVNSYGLVETDFGFHVIYLEDR- 448

Query: 277 DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL-RSNAIIH 315
                 +LK  L       ++E    + + +L RS++   
Sbjct: 449 -----TSLKDALKVATVTKRVEP-SEKTLNELYRSSSKFE 482


>gi|57101996|ref|XP_542080.1| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase
           NIMA-interacting 1 (Rotamase Pin1) (PPIase Pin1) [Canis
           familiaris]
          Length = 163

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 25/103 (24%), Gaps = 1/103 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +       R   +         +  ++      ++ +       +   +F+     
Sbjct: 57  CSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSA 116

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            + G         +   F++          + P  T  G+  I
Sbjct: 117 KARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHII 159


>gi|114205601|gb|AAI11395.1| PIN4 protein [Homo sapiens]
          Length = 142

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------LLKKS 253
           +I +A E      +      +++        G   ++    +   FQ             
Sbjct: 61  KIMEAMEKLKSGMRFNEVAAQYSED-KARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDK 119

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
              T  P  T+ G   I +  ++
Sbjct: 120 PVFTDPPVKTKFGYHIIMVEGRK 142


>gi|126342882|ref|XP_001372681.1| PREDICTED: similar to cAMP responsive element binding protein 5
           [Monodelphis domestica]
          Length = 183

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK-------KS 253
           RI +A E      +      +++        G   ++    +   FQ             
Sbjct: 102 RIMEAMEMLKSGVRFNEVASQYSED-KARQGGDLGWMTRGSMVGPFQEAAFALPVSGLDK 160

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
              T  P  T+ G   I I  ++
Sbjct: 161 PVYTDPPVKTKFGYHVIMIEGRK 183


>gi|50309377|ref|XP_454696.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643831|emb|CAG99783.1| KLLA0E16567p [Kluyveromyces lactis]
          Length = 162

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 8/111 (7%), Positives = 34/111 (30%), Gaps = 1/111 (0%)

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           E    + +  ++ ++    R       +N    +   ++ ++   +         +  ++
Sbjct: 49  EENPLRVRALHLLIKHKDSRRPASHRNENITITKDEAKEELETYIKRLNGGEPFESLAKE 108

Query: 222 FASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
            +        G   +    ++ P F+        +  ++   +  G+  I 
Sbjct: 109 RSDCSSAKRGGDLGFFGHGEMQPSFEKAAFALKIDQVSDIVESDSGLHIIK 159


>gi|303245476|ref|ZP_07331760.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ]
 gi|302493325|gb|EFL53187.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ]
          Length = 576

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/324 (13%), Positives = 88/324 (27%), Gaps = 32/324 (9%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +  +   F  L     V      +     +  A    +   + G  I   D+  R  L +
Sbjct: 1   MRLAAPSFRGLAVCLLVFFALSALLGGCGRDTAKEPGVVAMVGGAPIRLADVEARYDLGE 60

Query: 65  LQKIN------GELEKI---AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
           +            L       + ++IV  L +QE+ +   +     +     +   +   
Sbjct: 61  IGLPEVDNPPVETLRAAYGKVLADMIVARLVRQELARRHESVTEAEIAAVEKRVRAD--Y 118

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
             + F   L ++ I    +++ LA +       +    L+      E     +K  +   
Sbjct: 119 PGDSFDRMLLEERIDLARWREMLADRLALEKFTREVLRLEVRVEVTEAADYYKKHIDAFT 178

Query: 176 REYLIR--TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGK 233
               +R   V               +K  +  E    R                      
Sbjct: 179 TAPRMRLTRVQGRDGAAVKAALAAYRKSGRKLESLAGRSGITVRDAV------------- 225

Query: 234 AQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR-DLGGEIALK--AYLSA 290
              L E +L   ++  LK  +       +T+ G     I  +R         K  A + A
Sbjct: 226 ---LPEKNLPAPWREALKSLKEGEPTTILTEGGESLFCILQERLPAKVIDPAKAYARVEA 282

Query: 291 QNTPTKIEKHEAEYVKKLRSNAII 314
                K  K  A ++ +      I
Sbjct: 283 ILAGGKTAKAFAAWLAETLRTTKI 306


>gi|300214306|gb|ADJ78722.1| Foldase protein prsA [Lactobacillus salivarius CECT 5713]
          Length = 296

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 82/281 (29%), Gaps = 34/281 (12%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVE 83
           +  I  IV     A  S+   T +G  IT+ +    +             K  +Q++I+ 
Sbjct: 6   LVAISGIVLTFGLAACSKTVATTSGGKITESEYYSSMK-------KTSSGKQVLQQMILN 58

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            + ++E          N                 + + S  D     ++  K     +  
Sbjct: 59  KVLEKEYGSKVSDKKVN----------EQYNTYKKQYGSSFDSVLAQNDMTKSSFKQEIR 108

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
              ++K          + ++ A  ++ +                  + L ++    + I 
Sbjct: 109 SNLLLKEAVKDNTKITDKQLKAQWKEYEPK------------VTVAHILVSKKSTAEDII 156

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVS-IGKAQYL--LESDLHPQFQNLLKKSQNN--TT 258
           +  +            +K+++     +  GK       ++ L   F+      +    TT
Sbjct: 157 NKLKEDGSYANFKKLAKKYSTDSSTKNDGGKLAAFDNTDTSLDSTFKKAAFGLKQGSFTT 216

Query: 259 NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
            P  T+ G   I        G      + L +Q   +K+  
Sbjct: 217 EPVKTEYGYHVIYSIKNPGKGKMSDHTSELKSQIIDSKMSD 257


>gi|188532348|ref|YP_001906145.1| Peptidyl-prolyl cis-trans isomerase C [Erwinia tasmaniensis Et1/99]
 gi|259906858|ref|YP_002647214.1| Peptidyl-prolyl cis-trans isomerase C [Erwinia pyrifoliae Ep1/96]
 gi|188027390|emb|CAO95237.1| Peptidyl-prolyl cis-trans isomerase C [Erwinia tasmaniensis Et1/99]
 gi|224962480|emb|CAX53935.1| Peptidyl-prolyl cis-trans isomerase C [Erwinia pyrifoliae Ep1/96]
 gi|283476650|emb|CAY72478.1| peptidyl-prolyl cis-trans isomerase C [Erwinia pyrifoliae DSM
           12163]
          Length = 93

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             +K   D  E   +        +K ++       G      +  + P F + +      
Sbjct: 13  KEEKLALDLLEQLKQGADFEKLAKKHSTCPSGKKGGHLGEFKQGAMVPAFDKVVFSCPLI 72

Query: 256 NTTNPYVTQKGVEYIAIC 273
               P  TQ G   I + 
Sbjct: 73  EPQGPLHTQFGYHIIKVL 90


>gi|49484083|ref|YP_041307.1| peptidyl-prolyl cis-isomerase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257425953|ref|ZP_05602377.1| foldase prsA [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428618|ref|ZP_05605016.1| foldase prsA [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431255|ref|ZP_05607632.1| foldase prsA [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433935|ref|ZP_05610293.1| foldase prsA [Staphylococcus aureus subsp. aureus E1410]
 gi|257436851|ref|ZP_05612895.1| peptidyl-prolyl cis-isomerase [Staphylococcus aureus subsp. aureus
           M876]
 gi|282904416|ref|ZP_06312304.1| foldase protein PrsA [Staphylococcus aureus subsp. aureus C160]
 gi|282906239|ref|ZP_06314094.1| foldase prsA [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282909157|ref|ZP_06316975.1| foldase prsA [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911464|ref|ZP_06319266.1| foldase prsA [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914636|ref|ZP_06322422.1| foldase protein PrsA [Staphylococcus aureus subsp. aureus M899]
 gi|282919602|ref|ZP_06327337.1| foldase prsA [Staphylococcus aureus subsp. aureus C427]
 gi|282924982|ref|ZP_06332648.1| foldase prsA [Staphylococcus aureus subsp. aureus C101]
 gi|283958594|ref|ZP_06376045.1| foldase protein PrsA [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293503708|ref|ZP_06667555.1| foldase prsA [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510729|ref|ZP_06669434.1| foldase prsA [Staphylococcus aureus subsp. aureus M809]
 gi|293537271|ref|ZP_06671951.1| foldase protein PrsA [Staphylococcus aureus subsp. aureus M1015]
 gi|295428419|ref|ZP_06821048.1| foldase prsA [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590614|ref|ZP_06949252.1| peptidyl-prolyl cis-trans isomerase [Staphylococcus aureus subsp.
           aureus MN8]
 gi|56749225|sp|Q6GFL5|PRSA_STAAR RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|49242212|emb|CAG40919.1| putative peptidyl-prolyl cis-isomerase [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|257271647|gb|EEV03793.1| foldase prsA [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275459|gb|EEV06946.1| foldase prsA [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278203|gb|EEV08851.1| foldase prsA [Staphylococcus aureus subsp. aureus 68-397]
 gi|257282028|gb|EEV12165.1| foldase prsA [Staphylococcus aureus subsp. aureus E1410]
 gi|257284202|gb|EEV14325.1| peptidyl-prolyl cis-isomerase [Staphylococcus aureus subsp. aureus
           M876]
 gi|282313348|gb|EFB43744.1| foldase prsA [Staphylococcus aureus subsp. aureus C101]
 gi|282317412|gb|EFB47786.1| foldase prsA [Staphylococcus aureus subsp. aureus C427]
 gi|282321817|gb|EFB52142.1| foldase protein PrsA [Staphylococcus aureus subsp. aureus M899]
 gi|282325159|gb|EFB55469.1| foldase prsA [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327421|gb|EFB57716.1| foldase prsA [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331531|gb|EFB61045.1| foldase prsA [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282596034|gb|EFC00998.1| foldase protein PrsA [Staphylococcus aureus subsp. aureus C160]
 gi|283790743|gb|EFC29560.1| foldase protein PrsA [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920116|gb|EFD97184.1| foldase protein PrsA [Staphylococcus aureus subsp. aureus M1015]
 gi|291095374|gb|EFE25639.1| foldase prsA [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466620|gb|EFF09141.1| foldase prsA [Staphylococcus aureus subsp. aureus M809]
 gi|295127819|gb|EFG57456.1| foldase prsA [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575500|gb|EFH94216.1| peptidyl-prolyl cis-trans isomerase [Staphylococcus aureus subsp.
           aureus MN8]
 gi|312437694|gb|ADQ76765.1| peptidyl-prolyl cis-trans isomerase [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|315195752|gb|EFU26139.1| putative peptidyl-prolyl cis-isomerase [Staphylococcus aureus
           subsp. aureus CGS00]
          Length = 320

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/309 (11%), Positives = 86/309 (27%), Gaps = 27/309 (8%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K++    V +    + + +  + A  S+        +I+       +A    +    ++
Sbjct: 1   MKMINKLIVPVTASALLLGACGASATDSK-----ENTLISSKAGDVTVADTMKKIGKDQI 55

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
              +  E++ + L     +K     +   ++    +  +  G   +   +   +      
Sbjct: 56  ANASFTEMLNKIL----ADKYKNKVNDKKIDEQIEKMQKQYGGKDKFKKALQQQ-----G 106

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                           K     K    + EI        +      LI+          L
Sbjct: 107 LTADKYKENLRTAAYHKELLSDKIKISDSEIK-----EDSKKASHILIKVKSKKSDKEGL 161

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNL-L 250
            ++   QK  +  +E      K     +K +         G+  Y+L+      F+    
Sbjct: 162 DDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDKDFEKALF 221

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE---KHEAEYVKK 307
           K      ++   +  G   I            + K  L  +    K++   K   +  K 
Sbjct: 222 KLKDGEVSDVVKSSFGYHIIKAD---KPTDFNSEKQSLKEKLVDQKVQKNPKLLTDAYKD 278

Query: 308 LRSNAIIHY 316
           L     + +
Sbjct: 279 LLKEYDVDF 287


>gi|242374090|ref|ZP_04819664.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus epidermidis
           M23864:W1]
 gi|242348215|gb|EES39817.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus epidermidis
           M23864:W1]
          Length = 331

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 93/309 (30%), Gaps = 27/309 (8%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +KL+    V +    + + +  S A  S+     +  +I+      ++A +  +    ++
Sbjct: 1   MKLMNKIIVPVTASALLLGACGSNATESK-----DNTLISSKAGDVKVADVMKKIGKEQI 55

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
              +   ++ + L     +K     ++  V+    +  +  G   +  S    +      
Sbjct: 56  ANTSFNIVLNKILV----DKYKDKVNTKDVDEDIKKEEKQYGGKDQFESMLKQQ-----G 106

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                   Q       K   + K    + EI        +      LI+    S     L
Sbjct: 107 MSLDDYKEQKKLSAYQKQLLLDKVKVSDKEIK-----DDSKKASHILIKVKSKSSDKEGL 161

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNL-L 250
            ++   +K  K  +E      K     +K +         G   Y+++  +   F+    
Sbjct: 162 SDKKAKEKAEKIQKEVEKNPSKFGEIAKKESMDSSSAKKDGSLGYVIKGQMVDSFEKALF 221

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH---EAEYVKK 307
           K  +   +    T  G   I              K+ L  +    K++K      +  K 
Sbjct: 222 KLKEGQVSKVVKTDYGYHIIKAD---KETDFNKEKSNLKEKIIEQKVQKKPKLLTDAYKD 278

Query: 308 LRSNAIIHY 316
           L  +  + Y
Sbjct: 279 LLDDYKVDY 287


>gi|291387204|ref|XP_002710178.1| PREDICTED: protein (peptidyl-prolyl cis/trans isomerase)
           NIMA-interacting, 4 (parvulin)-like [Oryctolagus
           cuniculus]
          Length = 131

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------LLKKS 253
           +I +A E      K      +++        G   ++    +   FQ             
Sbjct: 50  KIMEAMEKLKSGMKFSEVAAQYSED-KARQGGNLGWMTRGSMVGPFQEAAFALPVSGMDK 108

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
              T  P  T+ G   I +  ++
Sbjct: 109 PVFTDPPVKTKFGYHIIMVEGRK 131


>gi|239995521|ref|ZP_04716045.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alteromonas
           macleodii ATCC 27126]
          Length = 101

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 33/102 (32%), Gaps = 17/102 (16%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  ++         +     +++ F    + SY   +  +    T+NGE I+  ++ +  
Sbjct: 1   MLERIREGSQGPWAMAIIALIVLSFVFAGVGSYL-TSSGTTAVATVNGEEISAQELERAY 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLK 86
              + Q  +                 +  +  +  LI E L 
Sbjct: 60  QNQRAQMESQYGESIAQLFSSEQYLADFRRNVLDRLIAEKLI 101


>gi|156323209|ref|XP_001618381.1| hypothetical protein NEMVEDRAFT_v1g9343 [Nematostella vectensis]
 gi|156198699|gb|EDO26281.1| predicted protein [Nematostella vectensis]
          Length = 72

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 7/67 (10%), Positives = 18/67 (26%), Gaps = 1/67 (1%)

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVT 263
            E+ +       +  +  +      + G   +     +   F+           + P  T
Sbjct: 3   QEQIKSGEATLEDLAKTESDCSSAKNGGDLGFFGRGQMQKPFETATFSLRVGEMSEPVFT 62

Query: 264 QKGVEYI 270
             G+  I
Sbjct: 63  DSGIHLI 69


>gi|148264051|ref|YP_001230757.1| hypothetical protein Gura_1994 [Geobacter uraniireducens Rf4]
 gi|146397551|gb|ABQ26184.1| hypothetical protein Gura_1994 [Geobacter uraniireducens Rf4]
          Length = 585

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 75/291 (25%), Gaps = 31/291 (10%)

Query: 31  VSYKSWAMSSRIRTTI-NGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
             +       R+   I   + IT  D++                    + L  +     +
Sbjct: 313 PGFAQLLKDRRVVVEIKGDKPITVADMA--------------------ESLSQKFFHGID 352

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
               G   +   ++  +        L                    +      ++   ++
Sbjct: 353 EAIKGKRINEQKMSALYDIFYARLYLKEAKKLGIDKT--GHYKDRIKDFKDSLLFGMFIQ 410

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
                +    + E  A   K         L+R +       K   +  + K  K  E   
Sbjct: 411 KVVAPEIKVSDDETKAYYNKHIGDYSTPELLR-IKGLAFTRKEYAEAAIDKLRKGTEYQW 469

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGV-E 268
           L+   +    ++ A  +          +  + L  + Q      +      Y + +G   
Sbjct: 470 LQANAEGQAAKESAGLLEFSPT----PVTRNGLPEKMQEATAGGKAGEYRLYESPEGFFY 525

Query: 269 YIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            + I D      +    ++  +  +    K+ +   E+  KLR    +  Y
Sbjct: 526 VLLIQDVVPAKPQPLENVQKVIVKKLFNAKLNQAVEEWGVKLRDAYKVQVY 576



 Score = 44.7 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 63/278 (22%), Gaps = 51/278 (18%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKI-----AVQELIVETLKKQEIEKSGITF 97
             T+  E +T  +++K +A L  +    +          +  LI   L  QE E  G   
Sbjct: 66  VATVGDEQVTLDELNKSLAALHERAGEDKTAGRKKYVTVLNRLINSRLIVQEAESMG--- 122

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                                      + +   D+  +  L  +                
Sbjct: 123 ----------------------LEELPEVKQKLDDFPRMALKEEL--------------- 145

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
               ++     +     V +Y    V      +    +    K +    ++     +  N
Sbjct: 146 ---KDLQIKSLQPDATEVEKYYKEAVKEWKIKSVKFEKEDDAKELARTVQAGGNFDELVN 202

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
            L                      L      +      + +             + D R 
Sbjct: 203 TLIDSGKATGTKEGEYV--KARDLLPQVANVVAGMRAGSVSPVIQVGPSYAIFKLEDVRY 260

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN-AII 314
             G    +     Q    K  +  A Y K L    A I
Sbjct: 261 PAGNAEAQDAAREQALAMKQIEALAAYNKSLTKKYAKI 298


>gi|330830348|ref|YP_004393300.1| peptidyl-prolyl cis-trans isomerase C [Aeromonas veronii B565]
 gi|328805484|gb|AEB50683.1| Peptidyl-prolyl cis-trans isomerase C [Aeromonas veronii B565]
          Length = 92

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 26/78 (33%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQN 255
             +K+  + +E   +        ++F++       G      + D+   F + + K    
Sbjct: 12  KTEKQCLEIKEKIEKGADFGQMAKRFSTCASAKRSGDLGEFNKGDMVKPFDDAVFKGELL 71

Query: 256 NTTNPYVTQKGVEYIAIC 273
               P  T+ G   I + 
Sbjct: 72  KVLGPVRTKFGFHLIKVL 89


>gi|302333506|gb|ADL23699.1| peptidylprolyl isomerase, PrsA [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 320

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/309 (11%), Positives = 86/309 (27%), Gaps = 27/309 (8%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K++    V +    + + +  + A  S+        +I+       +A    +    ++
Sbjct: 1   MKMINKLIVPVTASALLLGACGASATDSK-----ENTLISSKAGDVTVADTMKKIGKDQI 55

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
              +  E++ + L     +K     +   ++    +  +  G   +   +   +      
Sbjct: 56  ANASFTEMLNKIL----ADKYKNKVNDKKIDEQIEKMQKQYGGKDKFEKALQQQ-----G 106

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                           K     K    + EI        +      LI+          L
Sbjct: 107 LTADKYKENLRTAAYHKELLSDKIKISDSEIK-----EDSKKASHILIKVKSKKSDKEGL 161

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNL-L 250
            ++   QK  +  +E      K     +K +         G+  Y+L+      F+    
Sbjct: 162 DDKEAKQKAEEIQKEVSKNPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDKDFEKALF 221

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE---KHEAEYVKK 307
           K      ++   +  G   I            + K  L  +    K++   K   +  K 
Sbjct: 222 KLKDGEVSDVVKSSFGYHIIKAD---KPTDFNSEKQSLKEKLVDQKVQKNPKLLTDAYKD 278

Query: 308 LRSNAIIHY 316
           L     + +
Sbjct: 279 LLKEYDVDF 287


>gi|282917109|ref|ZP_06324867.1| foldase prsA [Staphylococcus aureus subsp. aureus D139]
 gi|282319596|gb|EFB49948.1| foldase prsA [Staphylococcus aureus subsp. aureus D139]
          Length = 320

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/309 (11%), Positives = 86/309 (27%), Gaps = 27/309 (8%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K++    V +    + + +  + A  S+        +I+       +A    +    ++
Sbjct: 1   MKMINKLIVPVTASALLLGACGASATDSK-----ENTLISSKAGDVTVADTMKKIGKDQI 55

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
              +  E++ + L     +K     +   ++    +  +  G   +   +   +      
Sbjct: 56  ANASFTEMLNKIL----ADKYKNKVNDKKIDEQIEKMQKQYGGKDKFEKALQQQ-----G 106

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                           K     K    + EI        +      LI+          L
Sbjct: 107 LTADKYKENLRTAAYHKELLSDKIKISDSEIK-----EDSKKASHILIKVKSKKSDKEGL 161

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNL-L 250
            ++   QK  +  +E      K     +K +         G+  Y+L+      F+    
Sbjct: 162 DDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDKDFEKALF 221

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE---KHEAEYVKK 307
           K      ++   +  G   I            + K  L  +    K++   K   +  K 
Sbjct: 222 KLKDGEVSDVVKSSFGYHIIKAD---KPTDFNSQKQSLKEKLVDQKVQKNPKLLTDAYKD 278

Query: 308 LRSNAIIHY 316
           L     + +
Sbjct: 279 LLKEYDVDF 287


>gi|91794656|ref|YP_564307.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           denitrificans OS217]
 gi|91716658|gb|ABE56584.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           denitrificans OS217]
          Length = 92

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 22/70 (31%)

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVT 263
           D  +      K     +K ++     + G      +  + PQF  +    +    +   T
Sbjct: 20  DIIKQLQNGAKFDVLAKKHSTCPSAKNGGNLGEFKKGQMVPQFDKVCFSGELIIPHLVKT 79

Query: 264 QKGVEYIAIC 273
           + G   I + 
Sbjct: 80  KFGWHVIKVL 89


>gi|315282338|ref|ZP_07870768.1| foldase protein PrsA [Listeria marthii FSL S4-120]
 gi|313614019|gb|EFR87733.1| foldase protein PrsA [Listeria marthii FSL S4-120]
          Length = 203

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 40/122 (32%), Gaps = 4/122 (3%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLK--KSQN 255
           +   K+ +       K  +  +++++      + G        ++   F+      K+ +
Sbjct: 58  EATAKEIQTKLKNGEKFADLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYALKNTD 117

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS-AQNTPTKIEKHEAEYVKKLRSNAII 314
           + +    +  G   I +  K + G     KA +  A        ++    +KK    A I
Sbjct: 118 DVSGIVKSTYGYHLIQLVKKTEKGTYEKEKANVKAAYIDSQLTSENMTAALKKELKAANI 177

Query: 315 HY 316
             
Sbjct: 178 DI 179


>gi|219118821|ref|XP_002180177.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408434|gb|EEC48368.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 92

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 22/76 (28%), Gaps = 4/76 (5%)

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ---NLLKKSQNNTTNP 260
           +     L         ++F++       G         +  +F       +        P
Sbjct: 15  EKIRGELAKDSFAKVAQQFSTCPSASQGGSLGSFYPGTMVKEFDAVIFDPETKLGEVVGP 74

Query: 261 YVTQKGVEYIAICDKR 276
             TQ G  +I + DKR
Sbjct: 75  VQTQFGNHFI-VVDKR 89


>gi|157817696|ref|NP_001100171.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Rattus
           norvegicus]
 gi|149020551|gb|EDL78356.1| protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1
           (predicted), isoform CRA_a [Rattus norvegicus]
 gi|165970767|gb|AAI58868.1| Peptidylprolyl cis/trans isomerase, NIMA-interacting 1 [Rattus
           norvegicus]
          Length = 165

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 25/103 (24%), Gaps = 1/103 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +       R   +         +  ++      ++ +       +   +F+     
Sbjct: 59  CSHLLVKHSQSRRPSSWRQEKITRSKEEALELINGYIQKIKSGEEDFESLASQFSDCSSA 118

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            + G         +   F++          + P  T  G+  I
Sbjct: 119 KARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHII 161


>gi|223043514|ref|ZP_03613559.1| foldase protein PrsA [Staphylococcus capitis SK14]
 gi|222443002|gb|EEE49102.1| foldase protein PrsA [Staphylococcus capitis SK14]
          Length = 333

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/308 (12%), Positives = 97/308 (31%), Gaps = 25/308 (8%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +KL+    V +    + + +  S A  S+     +  +I+      ++A +  +  N ++
Sbjct: 1   MKLMNKIIVPVTASALLLGACGSNATESK-----DNTLISSKAGDVKVADVMKKIGNEQI 55

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
              +   ++ + L     +K     D+  V+    +  +  G   +  S    +    D+
Sbjct: 56  ANTSFNIVLNKIL----ADKYKDKVDTKDVDEDIKKEEKQYGGKDQFESMLKQQGMSLDD 111

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
           + +Q          ++    +   G  +    A+   +K  +              +   
Sbjct: 112 YKEQKKLSAYQKQLLLDKVKVSDKGIKDNSKKASHILIKVKSKSSDKEGLSDKKAKEKAE 171

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LK 251
           + Q  V+K      E   +   D +  +K          G   Y+++  +   F+    K
Sbjct: 172 KIQKEVEKNPSKFGEIAKKESMDSSSAKKD---------GSLGYVIKGQMVDSFEKALFK 222

Query: 252 KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH---EAEYVKKL 308
             +   +    T  G   I              K+ L  +    K++K      +  K L
Sbjct: 223 LKEGQVSKVVKTDYGYHIIKAD---KENDFNKEKSNLKEKIIEQKVQKKPKLLTDAYKDL 279

Query: 309 RSNAIIHY 316
             +  + Y
Sbjct: 280 LDDYKVDY 287


>gi|146282555|ref|YP_001172708.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas stutzeri A1501]
 gi|145570760|gb|ABP79866.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas stutzeri A1501]
          Length = 92

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 6/77 (7%), Positives = 19/77 (24%), Gaps = 1/77 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-N 255
             +      ++             K+++       G    +    +      ++ K    
Sbjct: 12  KTEAEAAQLKKRLANGEAFDVLARKYSTCPSGKKGGDLGEVRPGQMVRSIDQVIFKKPLR 71

Query: 256 NTTNPYVTQKGVEYIAI 272
               P  +Q G   + +
Sbjct: 72  EVHGPVKSQFGYHLVQV 88


>gi|67484012|ref|XP_657226.1| peptidyl-prolyl cis-trans isomerase [Entamoeba histolytica
           HM-1:IMSS]
 gi|56474474|gb|EAL51841.1| peptidyl-prolyl cis-trans isomerase, putative [Entamoeba
           histolytica HM-1:IMSS]
          Length = 120

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/81 (12%), Positives = 28/81 (34%), Gaps = 2/81 (2%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-N 255
             Q +I +A               +++        G   +++   +   FQ++   +   
Sbjct: 41  EKQSKILEALAKLEEGKPFSQVATEYSED-KANQGGSLGWVIRGQMCGAFQDVAFNAPVG 99

Query: 256 NTTNPYVTQKGVEYIAICDKR 276
             T P+ T  G   + + +++
Sbjct: 100 KYTQPFKTPFGYHIVLVEERK 120


>gi|167523994|ref|XP_001746333.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775095|gb|EDQ88720.1| predicted protein [Monosiga brevicollis MX1]
          Length = 140

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/111 (11%), Positives = 31/111 (27%), Gaps = 8/111 (7%)

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGK 233
           +     +R +L       +Q    ++   K  +           ++    S+    S G 
Sbjct: 30  SGTAVEVRHILCEKHGKCMQALEKLRAAYKPEDGKPQSGLGVWTQVAMEFSEDKARSGGN 89

Query: 234 AQYLLESDLHPQFQNLLKKSQ-----NNTT---NPYVTQKGVEYIAICDKR 276
             ++    +   FQ+                   P  T+ G   I +  ++
Sbjct: 90  LGWMTRGGMVGPFQDTAFSMPITKPSGPVIFTDPPVKTKFGYHIIMVTGRK 140


>gi|255730987|ref|XP_002550418.1| peptidyl-prolyl cis-trans isomerase 1 [Candida tropicalis MYA-3404]
 gi|240132375|gb|EER31933.1| peptidyl-prolyl cis-trans isomerase 1 [Candida tropicalis MYA-3404]
          Length = 177

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 9/77 (11%), Positives = 22/77 (28%), Gaps = 1/77 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ- 254
             +Q+  K   + +    K  +     +        G   +  +  + P F+        
Sbjct: 98  EAIQQTKKHLAKIKNGEVKLGDLAVTESDCSSHERGGDLGFFSKGQMQPPFEEAAFNLHV 157

Query: 255 NNTTNPYVTQKGVEYIA 271
              +N   T  G+  + 
Sbjct: 158 GEVSNIVETNSGIHILQ 174


>gi|167383933|ref|XP_001736743.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting [Entamoeba
           dispar SAW760]
 gi|165900781|gb|EDR27021.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting, putative
           [Entamoeba dispar SAW760]
          Length = 120

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/81 (12%), Positives = 28/81 (34%), Gaps = 2/81 (2%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-N 255
             Q +I +A               +++        G   +++   +   FQ++   +   
Sbjct: 41  EKQSKILEALAKLEEGKPFSQVATEYSED-KANQGGSLGWVIRGQMCGAFQDVAFNAPVG 99

Query: 256 NTTNPYVTQKGVEYIAICDKR 276
             T P+ T  G   + + +++
Sbjct: 100 KYTQPFKTPFGYHIVLVEERK 120


>gi|45945695|gb|AAH05234.2| PIN4 protein [Homo sapiens]
 gi|47683021|gb|AAH70288.1| PIN4 protein [Homo sapiens]
          Length = 140

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------LLKKS 253
           +I +A E      +      +++        G   ++    +   FQ             
Sbjct: 59  KIMEAMEKLKSGMRFNEVAAQYSED-KARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDK 117

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
              T  P  T+ G   I +  ++
Sbjct: 118 PVFTDPPVKTKFGYHIIMVEGRK 140


>gi|330684763|gb|EGG96458.1| PPIC-type PPIASE domain protein [Staphylococcus epidermidis VCU121]
          Length = 330

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/313 (12%), Positives = 86/313 (27%), Gaps = 31/313 (9%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +  F K++       +              ++ I +           +   +  +   +I
Sbjct: 1   MKAFNKIMIPVTASALLLGACGSDATDSKENTLISSKAGDVK-----VEDVMKKIGKDQI 55

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             +   IA+ +++ +  K           D+  ++    +  +  G   +  S    +  
Sbjct: 56  ASKSFSIALDKILADKYK--------DKVDTKDIDKDIKKEEKQYGGKEQFESVLKQQ-- 105

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                       Q       K     K    + EI               LI+       
Sbjct: 106 ---GMSMDDYKDQKRLSAYQKELLNDKIKVSDKEIK-----DNTKKASHILIKVKSKDSD 157

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQF- 246
              L ++   QK  +  +E      K     +K +  K      G   Y+ +  +   F 
Sbjct: 158 KEGLSDKKAKQKAEEIQKEVSKDPSKFGEIAKKESMDKSSAKKDGSLGYVTKGQMMESFD 217

Query: 247 QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE---KHEAE 303
           + L K  +   +    T  G   I            + K+ L ++    KI+   K   +
Sbjct: 218 KALFKLKEGEVSKVVKTDYGYHIIKAD---KETDFNSEKSNLKSKILEQKIQKDPKLLTD 274

Query: 304 YVKKLRSNAIIHY 316
             K++     + Y
Sbjct: 275 AYKEILDEYKVDY 287


>gi|309789583|ref|ZP_07684164.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oscillochloris
           trichoides DG6]
 gi|308228319|gb|EFO81966.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oscillochloris
           trichoides DG6]
          Length = 317

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/294 (8%), Positives = 74/294 (25%), Gaps = 40/294 (13%)

Query: 31  VSYKSWAMSSRIRTTINGEVITDGDISKRIAL-----LKLQKINGELEKIAVQELIVETL 85
            +    + ++     +  +  T  D ++R+       +     +G+  +           
Sbjct: 30  GAALQVSATNPQILRVGPDTYTLNDFTQRMQADIGPAIANMIQSGQTREQI-------ET 82

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
              + +     FD+       +Q+AR+ G+  +      +   +                
Sbjct: 83  LANDQKVRAGIFDAMVQELLLMQYARSHGIGVDPAQVDANFFSMTRPFDPSDPFASPSAD 142

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
            +++    L    L     A+    + +                         +     A
Sbjct: 143 RLMQAQQQLTLEVLARNTRADMFHARMLQ---------------------LASEAEADQA 181

Query: 206 EESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQ 264
                      +  ++ +  +      G   +    +L P+  +       NT       
Sbjct: 182 LADLQAGADFASLAKERSKDLETAPKGGDLGWEPIGNLPPELDSAGFAQALNTPIKIQVG 241

Query: 265 KGVEYIAICDKRDLGGEIALKA-----YLSAQNTPTKI-EKHEAEYVKKLRSNA 312
           +      + +++        +A      L       +   +    +  +LR+ A
Sbjct: 242 ESWYVFEVLERQAGPNLEDKRAFEDFTQLQQSMGAQQFYTETFIPWYDQLRAAA 295


>gi|323339608|ref|ZP_08079882.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus ruminis ATCC
           25644]
 gi|323093003|gb|EFZ35601.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus ruminis ATCC
           25644]
          Length = 304

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 83/300 (27%), Gaps = 37/300 (12%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +  +FV     ++ +      A  S+   T +G  +T+ +    +             K 
Sbjct: 7   MKKWFVAAASVLMTL---SLAACGSKTVATTSGGKVTESEYYSSLK-------KTSSGKQ 56

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +QE+I+  +  +E          +     + +   ++  +    +++            
Sbjct: 57  VLQEMILNKILDKEYGDKVTDKKVDAEYNKYKKQYGSSFSTVLAQNNYTKS--------- 107

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
                      ++    +      +  + A  ++ +               +    +  +
Sbjct: 108 -SFKKNIRSSLLLHEALVANTKITDKMLEAQWKEYEPKIT-----------VAHILVAKK 155

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL--LESDLHPQFQNLLKKS 253
              +  I + ++            EK        + GK       ++ L   F+    K 
Sbjct: 156 SDAEAIINELKKDGSYKNFAKLAKEKSTDTGTKSNGGKLSAFDNTDTSLDSTFKKAAFKL 215

Query: 254 QNNT--TNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           +  T  T P  T  G   I        G     K  L  Q    K       Y++K+ S 
Sbjct: 216 KQGTFTTEPVKTSYGYHIIYSVKNPGKGKMSDHKKELKDQIINAKASDSS--YMQKILSK 273


>gi|71066028|ref|YP_264755.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter
           arcticus 273-4]
 gi|71039013|gb|AAZ19321.1| possible PpiC-type peptidyl-prolyl cis-trans isomerase
           [Psychrobacter arcticus 273-4]
          Length = 624

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/267 (8%), Positives = 72/267 (26%), Gaps = 19/267 (7%)

Query: 58  KRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
           ++  + K Q       ++++ +L    +         ++   +                 
Sbjct: 138 RQRNMTKNQLFAEFRNQLSLDQLNASIVGTAAYPMKAVSQLIDLQLESRNIWLHRFNW-- 195

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML------KYGNLEMEIPANKQKMK 171
           +D+ S +         +            +V   ++       +   +  E    + +  
Sbjct: 196 QDYVSQVKLNKSDIQAYYDANKDTLKSAAMVDLAYLQLSPQTIQVNEVTKEDLQQQYEAY 255

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
             ++     R +   +           + R    +    +        +  +      + 
Sbjct: 256 KQSLAVVDERKISQILLTGSDA-----KARADKVKARLAKGEVFTKLAKTESDDPSGEAG 310

Query: 232 GKAQYLLE----SDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICD--KRDLGGEIALK 285
           G           +D     + L   S  + + P  T  G +   + +     +    +++
Sbjct: 311 GDIGRFNPSVFGNDAAAVEKALEGLSVGDVSVPVKTSFGYQIFTVTEDSGSKIPSLESMR 370

Query: 286 AYLSAQNTPTKIEKHEAEYVKKLRSNA 312
             L+A+    K ++  A+ V  +   A
Sbjct: 371 DDLTAKAKEYKRQEVYADKVTAINDLA 397



 Score = 50.8 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 62/229 (27%), Gaps = 11/229 (4%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
             K+   L  +   +     L    ++ + SY    +       +    I   +    + 
Sbjct: 1   MDKLRDFLKSWPGRILLILCLSPLALLGVESYFGGNVDPNQIAQVGEASIGLSEYQTAVN 60

Query: 62  LLK----------LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
             +                 L +  ++ LI  TL +Q+  K G+T   +T+N    Q   
Sbjct: 61  NRRTELLDQVDDASLLNEDVLHEQVLKGLIDRTLLEQQAGKLGMTVSDDTINRLLRQEEI 120

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY-GNLEMEIPANKQKM 170
             G   E  +          N  K  L  +      +                  ++   
Sbjct: 121 FKGEDGEFSNDQFASFLRQRNMTKNQLFAEFRNQLSLDQLNASIVGTAAYPMKAVSQLID 180

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
             +  R   +    +    ++++      +   DA +  L+     +  
Sbjct: 181 LQLESRNIWLHRFNWQDYVSQVKLNKSDIQAYYDANKDTLKSAAMVDLA 229


>gi|45185568|ref|NP_983284.1| ACL120Wp [Ashbya gossypii ATCC 10895]
 gi|44981286|gb|AAS51108.1| ACL120Wp [Ashbya gossypii ATCC 10895]
          Length = 163

 Score = 55.1 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 7/87 (8%), Positives = 24/87 (27%), Gaps = 1/87 (1%)

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ 245
              ++   ++      ++   E   +  +      + +        G        ++ P 
Sbjct: 74  HRNEHITLDKAAAVAELEQYAERYRQGERFEELARERSDCSSYKRGGDLGTFGRGEMQPS 133

Query: 246 FQNLLKKSQ-NNTTNPYVTQKGVEYIA 271
           F+ +         ++   +  GV  I 
Sbjct: 134 FEKVAFALPVGGVSDVVESDSGVHLIK 160


>gi|329923364|ref|ZP_08278848.1| conserved domain protein [Paenibacillus sp. HGF5]
 gi|328941456|gb|EGG37748.1| conserved domain protein [Paenibacillus sp. HGF5]
          Length = 363

 Score = 55.1 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/349 (10%), Positives = 100/349 (28%), Gaps = 36/349 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K F SL           +++   ++   ++           T++G  I   +  + I
Sbjct: 4   MVHK-FCSLKWLFIAGFFILIVVTILLIAKPAFTQTHHEDAYIATVDGVEIHVSEFQRAI 62

Query: 61  ALLKL--------------------------QKINGELEKIAVQELIVET--LKKQEIEK 92
              +                           +     ++K A+++ I +       + + 
Sbjct: 63  DANRAGIIKYFHEKYDAAPSAAFWTTPYGGNEIPLELIKKKALEDSINQKIRQILAKEQG 122

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI---WPDVVK 149
                        F    +    + ++           +  + +Y+   ++      +++
Sbjct: 123 VLPDISYAGFMQNFNLENQRRQQAIKNHQVIFGPAQYTEEAYYEYVLANTVLSVKNHLME 182

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
           +D+      L     ANK+++ +      + +  L  +  N+  +     +  +  E +R
Sbjct: 183 HDWKPSEQQLITFYEANKRRLYHAPATVKVRQLSLSFLDANRNVDTLLKTQEKRKIETAR 242

Query: 210 LRLPKDCNKLEKFASKIHDV----SIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQK 265
            ++    +  +       D      +        +   P  Q          +       
Sbjct: 243 EKISSGVSFEQAVKDIKQDDRVTEQVYNLDSYRHNVRSPVAQASADLLPGEVSEIIEENG 302

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
               +   +K  LG +      +  Q     I+    EYV++  ++A +
Sbjct: 303 SFYLMLCMEKDQLGSKYLGFDGIREQVLKDYIDNQYEEYVRQRLTDAKV 351


>gi|251795790|ref|YP_003010521.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           JDR-2]
 gi|247543416|gb|ACT00435.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
           JDR-2]
          Length = 343

 Score = 55.1 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/327 (8%), Positives = 78/327 (23%), Gaps = 31/327 (9%)

Query: 18  TYFVLIIFCIVPIVSYKSWAMS-SRIRTTINGEVITDGDISKRIALLK------------ 64
              +      V        + S S    T+ G+ I+  +    +   K            
Sbjct: 8   VLLLASAGLAVAWPQPTGGSPSGSEAIATVGGQPISLDEFRLYMDKAKGEVTNYFSVTYG 67

Query: 65  -------------LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
                         ++    L+K A+++ +     +    ++G+    ++   F      
Sbjct: 68  AEDRKDYWTSAFGGERPIDRLKKQAMKDAVEGKTLQLLAVENGLAES-SSFADFTRNWND 126

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
           N    A+D        G+G+    Q+         +   + + +      +     +   
Sbjct: 127 NNQSRAKDLKQGKAIYGLGEYDLSQFYFYSISNLKLDLAEKLGERELKVTDQELLDRYQS 186

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
           +         T            +    K+I +A++            +K+       + 
Sbjct: 187 HAEFAGQTQLTYKELSIPFGDGEREQAYKQITEAQQELKAGLSFEEAAKKYTENGLRDNT 246

Query: 232 GKAQYLLESDLHPQF--QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS 289
                            Q   +      +       G   I + ++            + 
Sbjct: 247 VIIGGQDSPLQADAVLKQAAARLEIGEYSPVLDCGSGFSIIRLVNR--TDNFSVPLDSVK 304

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           AQ     ++     Y+        +  
Sbjct: 305 AQLQEEVLQLKFQAYLADQVKKRNVQI 331


>gi|221103350|ref|XP_002155257.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 149

 Score = 55.1 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 7/125 (5%), Positives = 25/125 (20%), Gaps = 1/125 (0%)

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
               +                +    +   +   R   +         +  +       +
Sbjct: 21  YFNTETNESQWEKPDNEEFQVRASHLLVKHKGSRRPSSWKQNVITRTEEEALDIIKNYHK 80

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
           +            +  +      + G   +     +   F+        N  + P  +  
Sbjct: 81  QITSGKTTLAALAQSESDCNSGKNGGDLGFFGPGQMQKSFEEAAFALKINEMSGPVYSDS 140

Query: 266 GVEYI 270
           G+  I
Sbjct: 141 GIHLI 145


>gi|255935639|ref|XP_002558846.1| Pc13g04100 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583466|emb|CAP91479.1| Pc13g04100 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 174

 Score = 55.1 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/164 (7%), Positives = 34/164 (20%), Gaps = 1/164 (0%)

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
                  S      F                   +   + +N       +   E     +
Sbjct: 10  WEVRHSNSKNLPYYFNPSTKESRWEPPAETDTDKLKVYMAQNHTPAARPDPSGEGEGKIR 69

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +       R   +   D     +  ++      +  +       +     +     
Sbjct: 70  CSHLLVKHRDSRRPSSWREADITRTKEEAIEILKGHEQRIQSGETTLGDLAVAESDCSSA 129

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
              G   +    ++  +F++          ++   T  GV  I 
Sbjct: 130 RKKGDLGFFGRGEMQKEFEDAAFGLQPGQVSSVIETASGVHLIE 173


>gi|227510549|ref|ZP_03940598.1| peptidylprolyl isomerase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227190201|gb|EEI70268.1| peptidylprolyl isomerase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 293

 Score = 55.1 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 80/280 (28%), Gaps = 37/280 (13%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           +I     ++S+   A  S+   T NG  IT+                    K  +Q++I+
Sbjct: 5   LIVLAGVLMSFTLAACGSKSVATTNGGKITES-------AYYSSLKGTSSGKQVLQQMIL 57

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
             + +++  K       + VN  F ++ +  G S              +      L    
Sbjct: 58  NKVLEKQYGKK---VKDSAVNKDFNKYKKQYGSSFNAVL-------QQNGMTASQLKDSI 107

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
               +++          + ++ A           +  +  +L S           ++   
Sbjct: 108 RSNLLLQQAVRDNTKFTDAQLKA----QFKSYQPKVTVNQILVSKKSTAETVIKQLKA-- 161

Query: 203 KDAEESRLRLPKDCNKLEKFASK-IHDVSIGKA---QYLLESDLHPQFQNLLKKSQNNTT 258
                         +  +K+++        G+         S      +   K    + T
Sbjct: 162 ---------GKSFSSLAKKYSTDTATKNKGGRISAFDNTNTSLDSNFKKAAFKLKNGDYT 212

Query: 259 N-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
             P  TQ G + I + +    G     ++ L  Q    ++
Sbjct: 213 KTPVKTQYGYQVIQMVNHPAKGTYKDHESELKTQLVDKRL 252


>gi|150020160|ref|YP_001305514.1| hypothetical protein Tmel_0255 [Thermosipho melanesiensis BI429]
 gi|149792681|gb|ABR30129.1| hypothetical protein Tmel_0255 [Thermosipho melanesiensis BI429]
          Length = 328

 Score = 54.7 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/319 (10%), Positives = 73/319 (22%), Gaps = 35/319 (10%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITD----------------GDISKRIALLKLQKING- 70
           + + S+     ++     +N EVIT                   I +    +      G 
Sbjct: 12  ISVFSFSEQLPATSTVAIVNEEVITLETLNSVADVQKLMVSISQIDQTFFNILSNTEEGI 71

Query: 71  ----ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
                 ++  +++L+ + L  Q  EK         V     +   N            + 
Sbjct: 72  KVILRYKRAILEQLVDKYLIVQFAEKYNARPSDEEVKQLVDEQLSNYLRDQGIDE---ET 128

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
                 +              +     L   NL   +  +     +     Y      ++
Sbjct: 129 FNFYLEYANMGSLEDFKKRMYLNTLVNLSIENLYKAVTKDATITVSEARDYYEKNIDKYA 188

Query: 187 IPDNKLQNQGFV--QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
            P         +      +D +             ++     +          L   L  
Sbjct: 189 TPTQYDLYLLKLSSDSVARDVKNRISGGESFEKVAKELGIDKYFYEGLSEGEELSQKL-- 246

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDK---RDLGGEIALKAYLSAQNTPTKI---E 298
            +  +    +     P   + G     I      R    E      +    +  K     
Sbjct: 247 -WMYIKNAPEGAILGPIDDKNGFYLFKILKIIPMRSKPFEEVKHDIIEEMLSSKKSTIWS 305

Query: 299 KHEAEYVKKLRSNAIIHYY 317
           +   +  KK +  + +  Y
Sbjct: 306 EFIDKEFKKFKEESDVKIY 324


>gi|114571246|ref|YP_757926.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Maricaulis maris
           MCS10]
 gi|114341708|gb|ABI66988.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Maricaulis maris
           MCS10]
          Length = 277

 Score = 54.7 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/186 (8%), Positives = 56/186 (30%), Gaps = 10/186 (5%)

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR------EYLIRTVLFSIPDNKL 192
             ++    +++    ++    E +  + ++   N   +            +L +   +  
Sbjct: 78  RPEAPDDSLIRVMLDVEVKTPEPDEASCRRYYDNNREKLRAPDLYEPAHILLQADRRDAP 137

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
             +  + +     E    +           +  +     G+   ++     P F+ +L +
Sbjct: 138 AFERALAEARTLLETLSEKPDLFARMARDRSDCVSATEGGRLGQVMRGQTTPAFEAVLAQ 197

Query: 253 SQNNTT--NPYVTQKGVEYIAICD--KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
            Q       P  T  GV  I +    + ++      +  +          +  +++V  +
Sbjct: 198 MQAGAIHPEPVETPYGVHIIRLDHAVRGNIPEFAQARPLVEEFLRDASWRRAVSQFVSLV 257

Query: 309 RSNAII 314
             +A +
Sbjct: 258 IGDAEV 263


>gi|118590091|ref|ZP_01547494.1| hypothetical protein SIAM614_11273 [Stappia aggregata IAM 12614]
 gi|118437063|gb|EAV43701.1| hypothetical protein SIAM614_11273 [Stappia aggregata IAM 12614]
          Length = 132

 Score = 54.7 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 2/118 (1%)

Query: 42  IRTTINGEVITDGDISKRIALLKLQKINGE--LEKIAVQELIVETLKKQEIEKSGITFDS 99
           I+  +N   ITD DIS+R  L+ + +       +K A +EL+ + +K  E E+ GI    
Sbjct: 14  IKIIVNDVPITDYDISQRARLITMTQRKSASIAKKQAEEELVDDQVKLAEAERVGIDVSK 73

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
           + V+  F   ARN  +S    S  L   G+  +  K+ L  Q  W  V+++ F  +  
Sbjct: 74  SEVDNAFNNIARNVKMSPAQLSKALRSGGVQPDTLKERLKAQLAWNQVLRSRFSGRIE 131


>gi|62739712|gb|AAH93700.1| Protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4
           (parvulin) [Homo sapiens]
 gi|85567709|gb|AAI12282.1| Protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4
           (parvulin) [Homo sapiens]
 gi|313883986|gb|ADR83479.1| protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4
           (parvulin) [synthetic construct]
          Length = 156

 Score = 54.7 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------LLKKS 253
           +I +A E      +      +++        G   ++    +   FQ             
Sbjct: 75  KIMEAMEKLKSGMRFNEVAAQYSED-KARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDK 133

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
              T  P  T+ G   I +  ++
Sbjct: 134 PVFTDPPVKTKFGYHIIMVEGRK 156


>gi|301166294|emb|CBW25869.1| peptidyl-prolyl cis-trans isomerase [Bacteriovorax marinus SJ]
          Length = 90

 Score = 54.7 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 6/66 (9%), Positives = 14/66 (21%), Gaps = 1/66 (1%)

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
           +              +++       G      +  +   F+           +    TQ 
Sbjct: 22  KKIEEGKTFEELARDYSNCPSGKDGGSLGSFGKGMMVKPFEQAAFALKVGEVSGAVRTQF 81

Query: 266 GVEYIA 271
           G   I 
Sbjct: 82  GYHLIK 87


>gi|329957339|ref|ZP_08297859.1| hypothetical protein HMPREF9445_02737 [Bacteroides clarus YIT
           12056]
 gi|328523052|gb|EGF50155.1| hypothetical protein HMPREF9445_02737 [Bacteroides clarus YIT
           12056]
          Length = 510

 Score = 54.7 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/294 (8%), Positives = 79/294 (26%), Gaps = 48/294 (16%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL-QKINGELEKIAVQELIVE 83
             +   +S+  ++    +   I G+ +   +        K          +   +  +  
Sbjct: 1   MMVFLGLSWSVFSQQDPVLMRIGGKDVLRSEFEYNYNRDKASLAPKDAAPEKYAERFVNF 60

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            LK                                       +    D        ++  
Sbjct: 61  KLKVAA-----------------------------------AEAAGLDTALAFRERVEGY 85

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
              ++K+         +       +        +  +  +   +P N             
Sbjct: 86  RSRLIKSYLTDTVVTEKAARRLYDKMKSGHRAGQVRVSHIFKYLPQNVSGAALRDAVARM 145

Query: 204 DAEESRLRLPKDCNKL----EKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT 258
           D+    L+   D        E+F+ +     +          +  +F++++   S    +
Sbjct: 146 DSIYEYLQRNPDSEAFDSCVERFSDEKQAFRVSWL------QMPVEFEDVVFGLSAGEMS 199

Query: 259 NPYVTQKGVEYIAICDKRDLGGEIALKAYL-SAQNTPTKIEKHEAEYVKKLRSN 311
            P+ T +G+  + + ++ ++    ++K  L + +     ++      V+KL+  
Sbjct: 200 QPFFTPQGIHIVKVLERLEMPSFESVKEELMARRAHRHGVDSGAEAQVEKLKKE 253


>gi|297670993|ref|XP_002813636.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4-like [Pongo abelii]
          Length = 157

 Score = 54.7 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------LLKKS 253
           +I +A E      +      +++        G   ++    +   FQ             
Sbjct: 76  KIMEAMEKLKSGMRFNEVAAQYSED-KARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDK 134

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
              T  P  T+ G   I +  ++
Sbjct: 135 PVFTDPPVKTKFGYHIIMVEGRK 157


>gi|226953081|ref|ZP_03823545.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
           [Acinetobacter sp. ATCC 27244]
 gi|226836173|gb|EEH68556.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
           [Acinetobacter sp. ATCC 27244]
          Length = 623

 Score = 54.7 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 66/234 (28%), Gaps = 6/234 (2%)

Query: 78  QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY 137
             L+ ++  +Q           +  +     + +    S ++ + + +K           
Sbjct: 167 NALVSKSDLQQLANLQTEQRTLHLASIKLDDYKKGVTASTQEITDYYNKHKNEFKQVASV 226

Query: 138 LAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGF 197
                +    +     L   + +++        K     +  ++ +L        ++   
Sbjct: 227 DVDYVVLSPALLEQANLAVTDADLQQAYAAFVEKQQQSVKREVKHIL---VTTDERDDAA 283

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ--YLLESDLHPQFQNLLKKSQN 255
            QK I D                +++      + G     Y   +        +      
Sbjct: 284 AQKLINDVYAKIQSGMTFAQAASQYSEDPSSKNQGGLVSAYAPGAFSADFDNAVNTLKNG 343

Query: 256 NTTNPYVTQKGVEYIAI-CDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
             + P  TQ G   I +     ++    + KA L+A+   TK     ++ V  L
Sbjct: 344 QVSKPVKTQYGYHIIEVQVPTVNIPSFESEKARLTAEVEKTKAANLFSDTVNNL 397



 Score = 54.3 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/320 (10%), Positives = 92/320 (28%), Gaps = 23/320 (7%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
                T +  ++  +     L    +V I  Y S    + +  ++NG+ I++ ++   I 
Sbjct: 1   MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFSGGNKADVAKSVNGQDISNKELESAIK 60

Query: 62  LLKLQK-----------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQ 108
             K Q                +++ A+  L+  +L  Q+ EK GI+     +        
Sbjct: 61  NYKDQYLALVQGDESLLNLSAIQERAMDALVARSLLSQQAEKLGISLSDAQLEQMLAQQP 120

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
             +  G  ++       +     N        Q     ++ +  +      + ++     
Sbjct: 121 SFQQNGQFSQQLYENYLRSVGLTNQALISSLRQDHALKMISSSLIDNALVSKSDLQQLAN 180

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
                          L         +   +       +    ++          +  + +
Sbjct: 181 LQTEQRTLHL-ASIKLDDYKKGVTASTQEITDYYNKHKNEFKQVASVDVDYVVLSPALLE 239

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
            +      + ++DL   +   ++K Q +             +   D+RD      L   +
Sbjct: 240 QANLA---VTDADLQQAYAAFVEKQQQSVKREVK-----HILVTTDERDDAAAQKLINDV 291

Query: 289 SAQNTPTK-IEKHEAEYVKK 307
            A+        +  ++Y + 
Sbjct: 292 YAKIQSGMTFAQAASQYSED 311


>gi|314934005|ref|ZP_07841370.1| foldase protein PrsA [Staphylococcus caprae C87]
 gi|313654155|gb|EFS17912.1| foldase protein PrsA [Staphylococcus caprae C87]
          Length = 333

 Score = 54.7 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/308 (12%), Positives = 96/308 (31%), Gaps = 25/308 (8%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +KL+    V +    + + +  S A  S+     +  +I+      ++A +  +  N ++
Sbjct: 1   MKLMNKIIVPVTASALLLGACGSNATESK-----DNTLISSKAGDVKVADVMKKIGNEQI 55

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
              +   ++ + L     +K     D+  V+    +  +  G   +  S    +    D+
Sbjct: 56  ANTSFNIVLNKIL----ADKYKDKVDTKDVDEDIKKEEKQYGGKDQFESILKQQGMSLDD 111

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
           + +Q          ++    +      +    A+   +K  +              +   
Sbjct: 112 YKEQKKLSAYQKQLLLDKVKVSDKNIKDNSKKASHILIKVKSKSSDKEGLSDKKAKEKAE 171

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LK 251
           + Q  V+K      E   +   D +  +K          G   Y+++  +   F+    K
Sbjct: 172 KIQKEVEKNPSKFGEIAKKESMDSSSAKKD---------GSLGYVIKGQMVDSFEKALFK 222

Query: 252 KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH---EAEYVKKL 308
             +   +    T  G   I              K+ L  +    K++K      +  K L
Sbjct: 223 LKEGQVSKVVKTDYGYHIIKAD---KENDFNKEKSNLKEKIIEQKVQKKPKLLTDAYKDL 279

Query: 309 RSNAIIHY 316
             +  + Y
Sbjct: 280 LDDYKVDY 287


>gi|321479467|gb|EFX90423.1| hypothetical protein DAPPUDRAFT_299806 [Daphnia pulex]
          Length = 130

 Score = 54.7 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK---- 252
             Q +I +A E      K       ++      S G   +++   +   FQ         
Sbjct: 45  EKQSKILEALEKLKAGMKFNEVAATYSED-KARSGGDLGWMVRGSMVGPFQEAAFALPIS 103

Query: 253 ---SQNNTTNPYVTQKGVEYIAICDKR 276
              +   T  P  T+ G   I +  K+
Sbjct: 104 SLGNPVYTDPPVKTKFGYHIIMVEGKK 130


>gi|294650670|ref|ZP_06728024.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292823461|gb|EFF82310.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 623

 Score = 54.7 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 66/234 (28%), Gaps = 6/234 (2%)

Query: 78  QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY 137
             L+ ++  +Q           +  +     + +    S ++ + + +K           
Sbjct: 167 NALVSKSDLQQLANLQTEQRTLHLASIKLDDYKKGVTASTQEITDYYNKHKNEFKQVASV 226

Query: 138 LAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGF 197
                +    +     L   + +++        K     +  ++ +L        ++   
Sbjct: 227 DVDYVVLSPALLEQANLAVTDADLQQAYAAFVEKQQQSVKREVKHIL---VTTDERDDAA 283

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ--YLLESDLHPQFQNLLKKSQN 255
            QK I D                +++      + G     Y   +        +      
Sbjct: 284 AQKLINDVYAKIQSGMTFAQAASQYSEDPSSKNQGGLVSAYAPGAFSADFDNAVNTLKNG 343

Query: 256 NTTNPYVTQKGVEYIAI-CDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
             + P  TQ G   I +     ++    + KA L+A+   TK     ++ V  L
Sbjct: 344 QVSKPVKTQYGYHIIEVQVPTVNIPSFESEKARLTAEVEKTKAANLFSDTVNNL 397



 Score = 54.3 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/320 (10%), Positives = 92/320 (28%), Gaps = 23/320 (7%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
                T +  ++  +     L    +V I  Y S    + +  ++NG+ I++ ++   I 
Sbjct: 1   MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFSGGNKADVAKSVNGQDISNKELESAIK 60

Query: 62  LLKLQK-----------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQ 108
             K Q                +++ A+  L+  +L  Q+ EK GI+     +        
Sbjct: 61  NYKDQYLALVQGDESLLNLSAIQERAMDALVARSLLSQQAEKLGISLSDAQLEQMLAQQP 120

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
             +  G  ++       +     N        Q     ++ +  M      + ++     
Sbjct: 121 SFQQNGQFSQQLYENYLRSVGLTNQALISSLRQDHALKMISSSLMDNALVSKSDLQQLAN 180

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
                          L         +   +       +    ++          +  + +
Sbjct: 181 LQTEQRTLHL-ASIKLDDYKKGVTASTQEITDYYNKHKNEFKQVASVDVDYVVLSPALLE 239

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
            +      + ++DL   +   ++K Q +             +   D+RD      L   +
Sbjct: 240 QANLA---VTDADLQQAYAAFVEKQQQSVKREVK-----HILVTTDERDDAAAQKLINDV 291

Query: 289 SAQNTPTK-IEKHEAEYVKK 307
            A+        +  ++Y + 
Sbjct: 292 YAKIQSGMTFAQAASQYSED 311


>gi|90022282|ref|YP_528109.1| cell wall hydrolase/autolysin [Saccharophagus degradans 2-40]
 gi|89951882|gb|ABD81897.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Saccharophagus
           degradans 2-40]
          Length = 92

 Score = 54.7 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 19/76 (25%), Gaps = 1/76 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN- 255
             +   +  ++            +K +        G         +   F N++ K    
Sbjct: 12  KTKSEAEKLKQQLANGADFGTLAKKHSLCASAKQGGDLGEFNPGQMVKAFDNVVFKKPIL 71

Query: 256 NTTNPYVTQKGVEYIA 271
               P  TQ G   I 
Sbjct: 72  TVHGPIKTQFGFHLIE 87


>gi|282851249|ref|ZP_06260614.1| PPIC-type PPIASE domain protein [Lactobacillus gasseri 224-1]
 gi|282557217|gb|EFB62814.1| PPIC-type PPIASE domain protein [Lactobacillus gasseri 224-1]
          Length = 303

 Score = 54.7 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/298 (11%), Positives = 72/298 (24%), Gaps = 33/298 (11%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
              +     I    +     +   T  G  IT+     ++          +  +  +  +
Sbjct: 13  AATVLAFAGIALSATACSGGKAVVTYKGGKITESQYYNKMK-------ESQAGQSTLASM 65

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           IV    + +  K       +          +        F S L++ G+  + FK  L  
Sbjct: 66  IVSDALESQYGKEVTQKQVDKEYN------KYKKQYGSQFDSVLEQNGMTASTFKDNLKT 119

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
             +    +    + K    + +      + +               +           Q 
Sbjct: 120 NLLTEAAL--KHIKKITPAQEKKAWKNYQPEVT--------VQHILVSKKSTAEDIIKQL 169

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN 259
           +     +   +        +  A K+             S L   F+    K      T 
Sbjct: 170 KDGGDFKKLAKKYSTDTATKNDAGKLPAFDSTD------STLDSSFKTAAFKLKTGEITT 223

Query: 260 -PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE--AEYVKKLRSNAII 314
            P  TQ G   I +      G     K  +  Q   +  E        +  +   A +
Sbjct: 224 TPVKTQYGYHVIKMIKHPAKGTLKEHKKQIDNQIYQSMSEDQSVMRSVIATVLKRADV 281


>gi|291231994|ref|XP_002735945.1| PREDICTED: protein (peptidyl-prolyl cis/trans isomerase)
           NIMA-interacting 1-like [Saccoglossus kowalevskii]
          Length = 152

 Score = 54.7 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 7/97 (7%), Positives = 19/97 (19%), Gaps = 1/97 (1%)

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKA 234
                 R   +   +     +  ++   +                   +        G  
Sbjct: 52  KHRESRRPASWKEDNITRTKEEALEILKEHRRRIVSGEISFAELASTESDCSSAKRGGDL 111

Query: 235 QYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                  +   F++          + P  T  G+  I
Sbjct: 112 GPFGRGQMQKPFEDATFALKVGELSEPVFTDSGIHII 148


>gi|184157984|ref|YP_001846323.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii ACICU]
 gi|332874443|ref|ZP_08442346.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6014059]
 gi|183209578|gb|ACC56976.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase)
           [Acinetobacter baumannii ACICU]
 gi|323517928|gb|ADX92309.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
           [Acinetobacter baumannii TCDC-AB0715]
 gi|332737287|gb|EGJ68211.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6014059]
          Length = 621

 Score = 54.7 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/396 (11%), Positives = 90/396 (22%), Gaps = 89/396 (22%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
                T +  ++  +     L    +V I  Y +    + +  T+NG+ I+  D+     
Sbjct: 1   MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQ 60

Query: 62  LLKLQK-----------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQ 108
             K Q                ++  A+  L+   L  Q+ EK GI+  +  +        
Sbjct: 61  RYKEQYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSNAQIEQMLAQQP 120

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK------------- 155
             +  G  ++       +     +        Q     ++ + F                
Sbjct: 121 SLQENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTSTFADYSLVSKVDLMQIAN 180

Query: 156 ---------------------YGNLEMEIPANKQKMKNITVRE----------------- 177
                                    + E      K +N   +                  
Sbjct: 181 LQTEQRTLHLASIKLDPYKAGLTASDQEATDYYNKHQNEFKQPASVDVDYVVLSPSLMAK 240

Query: 178 --YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG--- 232
                   L       ++ Q    KRI            D    +        +  G   
Sbjct: 241 PAPATDAELKQAYAKFVETQQKDAKRIVKHILITTDARDDAAAQKLAKDVYAKIQGGLSF 300

Query: 233 ---------KAQYLLESDLHPQFQNLLKK----------SQNNTTNPYVTQKGVEYIAIC 273
                          +  L   +   +                 + P  TQ G   I   
Sbjct: 301 AQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSLKNGQISQPVKTQYGYHIIEAE 360

Query: 274 -DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
                +    A K  L A+    K+    ++ V  L
Sbjct: 361 TQANQIPSFEAEKPRLIAEVEKNKVASVYSDTVNSL 396


>gi|300361160|ref|ZP_07057337.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus gasseri JV-V03]
 gi|300353779|gb|EFJ69650.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus gasseri JV-V03]
          Length = 298

 Score = 54.7 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/298 (11%), Positives = 72/298 (24%), Gaps = 33/298 (11%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
              +     I    +     +   T  G  IT+     ++          +  +  +  +
Sbjct: 8   AATVLAFAGIALSATACSGGKAVVTYKGGKITESQYYNKMK-------ESQAGQSTLASM 60

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           IV    + +  K       +          +        F S L++ G+  + FK  L  
Sbjct: 61  IVSDALESQYGKDVTQKQVDKEYN------KYKKQYGSQFDSVLEQNGMTASTFKDNLKT 114

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
             +    +    + K    + +      + +               +           Q 
Sbjct: 115 NLLTEAAL--KHIKKITPAQEKKAWKNYQPEVT--------VQHILVSKKSTAEDIIKQL 164

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN 259
           +     +   +        +  A K+             S L   F+    K      T 
Sbjct: 165 KDGGDFKKLAKKYSTDTATKNDAGKLPAFDSTD------STLDSSFKTAAFKLKTGEITT 218

Query: 260 -PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE--AEYVKKLRSNAII 314
            P  TQ G   I +      G     K  +  Q   +  E        +  +   A +
Sbjct: 219 TPVKTQYGYHVIKMIKHPAKGTLKEHKKQIDNQIYQSMSEDQSVMRSVIATVLKRADV 276


>gi|42519550|ref|NP_965480.1| peptidylprolyl isomerase [Lactobacillus johnsonii NCC 533]
 gi|46396699|sp|P60750|PRSA1_LACJO RecName: Full=Foldase protein prsA 1; Flags: Precursor
 gi|41583839|gb|AAS09446.1| protease maturation protein precursor [Lactobacillus johnsonii NCC
           533]
 gi|329667789|gb|AEB93737.1| protease maturation protein precursor [Lactobacillus johnsonii DPC
           6026]
          Length = 298

 Score = 54.7 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/301 (11%), Positives = 75/301 (24%), Gaps = 39/301 (12%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
              +     I    +     +   T  G  IT+     ++          +  +  +  +
Sbjct: 8   AATVLAFAGIALSATACSGGKAVVTYKGGKITESQYYDKMK-------ESQAGQSTLASM 60

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           IV    + +  K       +          +        F S L++ G+  + FK  L  
Sbjct: 61  IVSDALESQYGKDVTQKQVDKEYN------KYKKQYGSQFDSVLEQNGMTASTFKDNLKT 114

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
             +    +    + K    + +              E  ++ +L              + 
Sbjct: 115 NLLTEAAL--KHIKKITPAQEKKAWK------NYQPEVTVQHIL-----------VSKKS 155

Query: 201 RIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESD---LHPQFQNLLKKSQNN 256
             +D  +            +K+++        GK      +D            K     
Sbjct: 156 TAEDVIKQLQDGGDFKKLAKKYSTDTATKNDAGKLPAFDSTDSTLDSSFKTAAFKLKTGE 215

Query: 257 TTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH--EAEYVKKLRSNAI 313
            T  P  TQ G   I +      G     K  +  Q   +  E        +  +   A 
Sbjct: 216 ITTTPVKTQYGYHVIKMIKHPAKGTFKEHKKQIDNQIYQSMSEDQNVMRSVIATVLKRAD 275

Query: 314 I 314
           +
Sbjct: 276 V 276


>gi|209520345|ref|ZP_03269110.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           H160]
 gi|209499219|gb|EDZ99309.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           H160]
          Length = 250

 Score = 54.7 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/270 (11%), Positives = 68/270 (25%), Gaps = 26/270 (9%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              I+ EV+   D+ + I LLKL            + LI + ++ +    +         
Sbjct: 4   IVRIDEEVV---DVDEFIRLLKLTGQ--------FESLIEQIVRDKLTVHAAKKQGLAVT 52

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                Q A           +      +   H         I   + +   + +    +  
Sbjct: 53  ADEIQQRADQFRRVRGLHRAADMNHYLDALHVSLDEFEVFITDGLYQEKMLDEV-GNDAA 111

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           I               +   VL +             K  +                 + 
Sbjct: 112 IHDYFALNSPKFDAIEVSHIVLDNEG-----------KAKEMISYLHDDPDSFAEMAREH 160

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQ-NLLKKSQNNTTNPYVTQKG--VEYIAICDKRDLG 279
           +      S G    +L   L P  +  +   +  +   P+ +      E  A+  K    
Sbjct: 161 SIADTRESGGVIGKVLRGSLKPDIEAKIFNAAVGDLLGPFPSVDRSCFEIFAVTAKYPAT 220

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
            +  +   +      + +     E+V + R
Sbjct: 221 LDADVATEIRRLLRESWLIARAQEHVIEAR 250


>gi|297181721|gb|ADI17902.1| parvulin-like peptidyl-prolyl isomerase [uncultured
           Desulfobacterales bacterium HF0200_07G10]
          Length = 299

 Score = 54.7 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 32/103 (31%), Gaps = 1/103 (0%)

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQ 264
           ++           +  F++     + G   ++ E +L     Q + +    N   P  +Q
Sbjct: 21  KKQLDSGISFEEVVTNFSTCPSKENAGDLGWMPEGNLQSIMGQEVSESDIGNVIGPVHSQ 80

Query: 265 KGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
            G   + I +      E    A LS ++             K+
Sbjct: 81  YGYHILKISEIEVEKIEGPFNAELSMESANQIFPDVHNILFKE 123


>gi|163748477|ref|ZP_02155731.1| parvulin-like peptidyl-prolyl isomerase [Shewanella benthica KT99]
 gi|294142261|ref|YP_003558239.1| peptidyl-prolyl cis-trans isomerase C [Shewanella violacea DSS12]
 gi|161332055|gb|EDQ02732.1| parvulin-like peptidyl-prolyl isomerase [Shewanella benthica KT99]
 gi|293328730|dbj|BAJ03461.1| peptidyl-prolyl cis-trans isomerase C [Shewanella violacea DSS12]
          Length = 92

 Score = 54.7 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 4/77 (5%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +++ +D  +   +  K     +K +S       G      +  + PQF  +         
Sbjct: 15  KEQAEDIIKQLKKGVKFDVLAKKHSSCPSGKKGGSLGEFKKGQMVPQFDKV--CFTGELI 72

Query: 259 NP--YVTQKGVEYIAIC 273
            P    T+ G   I + 
Sbjct: 73  TPHLVKTKFGWHVIKVL 89


>gi|90021692|ref|YP_527519.1| hypothetical protein Sde_2047 [Saccharophagus degradans 2-40]
 gi|89951292|gb|ABD81307.1| hypothetical protein Sde_2047 [Saccharophagus degradans 2-40]
          Length = 289

 Score = 54.7 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/318 (9%), Positives = 80/318 (25%), Gaps = 49/318 (15%)

Query: 14  KLLTTYFVLIIFCIVPIV-------SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ 66
           K +++  + ++                 S A SS +  T+NG  IT  ++   I      
Sbjct: 5   KSISSIALAVLLVASGCSDKEPEEVVTSSSADSSEVVATVNGAPITSHELELAIERTLGA 64

Query: 67  KIN----GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
                   EL K  +  L+      Q                             +  + 
Sbjct: 65  NAELFMTDELAKKLLDSLVASKAIAQ-----------------------------KSEAL 95

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
                 +  +   +    + +    ++     +       +        N      + + 
Sbjct: 96  LSADDLVLLDLKTKAYREELLVKAYLEQKVTPQ-PVTAEMVKKYYLDNPNKFGGGSIKQF 154

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
               +     ++   + K   +   ++              + +              DL
Sbjct: 155 EYIQVQIQAKEDAASLLKVFNEITANKNWAQAVNTIKSTNGAWVVAHKSASL---NPKDL 211

Query: 243 HPQFQNLLKKSQNNTTNPYVTQKG--VEYIAICDKRD--LGGEIALKAYLSAQNTPTKIE 298
               ++++ K+      P     G     + + D++   L     +   +     P +++
Sbjct: 212 QEPLKSIVAKTGAGAVAPVDV-NGLVYTLVKVLDEKPLALKPLAEVSGEIRKSLAPLQLK 270

Query: 299 KHEAEYVKKLRSNAIIHY 316
           +   E        A++ Y
Sbjct: 271 QAVREISDSALKEAVVVY 288


>gi|253735279|ref|ZP_04869444.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|253726686|gb|EES95415.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus aureus subsp.
           aureus TCH130]
          Length = 320

 Score = 54.7 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/309 (11%), Positives = 85/309 (27%), Gaps = 27/309 (8%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K++    V +    + + +  + A  S+        +I+       +A    +    ++
Sbjct: 1   MKMINKLIVPVTASALLLGACGASATDSK-----ENTLISSKAGDVTVADTMKKIGKDQI 55

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
              +  E++ + L     +K     +   ++    +  +  G   +   +   +      
Sbjct: 56  ANASFTEMLNKIL----ADKYKNKVNDKKIDEQIEKMQKQYGGKDKFEKALQQQ-----G 106

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                           K     K    + EI        +      LI+          L
Sbjct: 107 LTADKYKENLRTAAYHKELLSDKIKISDSEIK-----EDSKKASHILIKVKSKKSDKEGL 161

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNL-L 250
            ++   QK  +  +E      K     +K +         G+  Y+L+      F+    
Sbjct: 162 DDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDKDFEKALF 221

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE---KHEAEYVKK 307
           K      +    +  G   I            + K  L  +    K++   K   +  K 
Sbjct: 222 KLKDGEVSEVVKSSFGYHVIKAD---KPTDFNSEKQSLKEKLVDQKVQKNPKLLTDAYKD 278

Query: 308 LRSNAIIHY 316
           L     + +
Sbjct: 279 LLKEYDVDF 287


>gi|303257435|ref|ZP_07343448.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderiales
           bacterium 1_1_47]
 gi|302859792|gb|EFL82870.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderiales
           bacterium 1_1_47]
          Length = 259

 Score = 54.7 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 63/238 (26%), Gaps = 17/238 (7%)

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           + +  +  ++       D                L  E        Q             
Sbjct: 23  VADQQELMKVLADRGVKDQKQQLEAARSILAQEKLIEEAAKKANIAQDPAVKALIAERQT 82

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           +    ++V+ +               ++  K     E  +R +L              ++
Sbjct: 83  EIYSAELVRKNAAAHPLTDADLKKTYEEVKKQYDPNEIKVRHIL-----------VKTEQ 131

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQY--LLESDLHPQFQNLLKKSQNNT 257
             KD  +S           ++ +         G+  +  +    +    +  +  ++   
Sbjct: 132 EAKDIIKSLNAGGDFATIAKEKSLDQGTAAQGGEIPFTNIRRIAIPGFAETAMALNKGAL 191

Query: 258 TN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              P+ +  G   I + DKR++         L  Q      ++   +Y+  L  NA I
Sbjct: 192 LPVPFHSALGYHVIQLQDKREVPL--PSFDALKPQIQNLAAQRQAQQYMADLMKNAKI 247


>gi|169845229|ref|XP_001829334.1| hypothetical protein CC1G_00513 [Coprinopsis cinerea okayama7#130]
 gi|116509399|gb|EAU92294.1| hypothetical protein CC1G_00513 [Coprinopsis cinerea okayama7#130]
          Length = 174

 Score = 54.7 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 8/91 (8%), Positives = 22/91 (24%), Gaps = 1/91 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R   +   +     +  ++       +      K     +  +        G   +    
Sbjct: 80  RPSSWKEENITRTKEEAIEILKGYEAQIGGDPAKFAELAQAHSDCSSHSHGGDLGWFGRG 139

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            +   F++          ++   T  GV  I
Sbjct: 140 QMQKPFEDATFALEVGKMSDVISTDSGVHLI 170


>gi|302842666|ref|XP_002952876.1| hypothetical protein VOLCADRAFT_82005 [Volvox carteri f.
           nagariensis]
 gi|300261916|gb|EFJ46126.1| hypothetical protein VOLCADRAFT_82005 [Volvox carteri f.
           nagariensis]
          Length = 253

 Score = 54.7 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/91 (9%), Positives = 21/91 (23%), Gaps = 1/91 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R   +  P      +  +    +  +              + +        G        
Sbjct: 159 RPSSWKEPVVTRTREEALAMIQRFHKMLVSGEADFATLASQESHCSSAKRGGDLGEFGRG 218

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
           D+   F++          + P  +  GV  I
Sbjct: 219 DMQKPFEDATYALKVGELSGPVFSDSGVHLI 249


>gi|116630072|ref|YP_815244.1| peptidylprolyl isomerase [Lactobacillus gasseri ATCC 33323]
 gi|238854106|ref|ZP_04644453.1| foldase protein PrsA 1 [Lactobacillus gasseri 202-4]
 gi|311110302|ref|ZP_07711699.1| foldase protein PrsA 1 [Lactobacillus gasseri MV-22]
 gi|116095654|gb|ABJ60806.1| Parvulin-like peptidyl-prolyl isomerase [Lactobacillus gasseri ATCC
           33323]
 gi|238833182|gb|EEQ25472.1| foldase protein PrsA 1 [Lactobacillus gasseri 202-4]
 gi|311065456|gb|EFQ45796.1| foldase protein PrsA 1 [Lactobacillus gasseri MV-22]
          Length = 298

 Score = 54.7 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/298 (11%), Positives = 72/298 (24%), Gaps = 33/298 (11%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
              +     I    +     +   T  G  IT+     ++          +  +  +  +
Sbjct: 8   AATVLAFAGIALSATACSGGKAVVTYKGGKITESQYYNKMK-------ESQAGQSTLASM 60

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           IV    + +  K       +          +        F S L++ G+  + FK  L  
Sbjct: 61  IVSDALESQYGKEVTQKQVDKEYN------KYKKQYGSQFDSVLEQNGMTASTFKDNLKT 114

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
             +    +    + K    + +      + +               +           Q 
Sbjct: 115 NLLTEAAL--KHIKKITPAQEKKAWKNYQPEVT--------VQHILVSKKSTAEDIIKQL 164

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN 259
           +     +   +        +  A K+             S L   F+    K      T 
Sbjct: 165 KDGGDFKKLAKKYSTDTATKNDAGKLPAFDSTD------STLDSSFKTAAFKLKTGEITT 218

Query: 260 -PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE--AEYVKKLRSNAII 314
            P  TQ G   I +      G     K  +  Q   +  E        +  +   A +
Sbjct: 219 TPVKTQYGYHVIKMIKHPAKGTLKEHKKQIDNQIYQSMSEDQSVMRSVIATVLKRADV 276


>gi|148555285|ref|YP_001262867.1| hypothetical protein Swit_2370 [Sphingomonas wittichii RW1]
 gi|148500475|gb|ABQ68729.1| hypothetical protein Swit_2370 [Sphingomonas wittichii RW1]
          Length = 286

 Score = 54.3 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/288 (9%), Positives = 64/288 (22%), Gaps = 44/288 (15%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIA--LLKLQKINGELEKIAVQELIVETLKKQE 89
           S        +I   +NGE I+  +++  +    +       +L K  +Q LI   L  Q+
Sbjct: 19  SGCHKEPKGQILAIVNGEEISLQELNAELQGTRIPDSVDRDKLRKQVLQRLIDRKLIVQK 78

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
             + G+      V                                      +++   ++ 
Sbjct: 79  AREQGLDKTPEYVTQQ-------------------------------RRLEENLLVTMLG 107

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
                     +                      +           +  +  R     E+ 
Sbjct: 108 QKIASTVPMPDDRDITQYIADNPTQFASRQRLLLDQIQFAAPKDPKQLLTLRDAHTLEAL 167

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY 269
               +                      +    L P    ++ +          +      
Sbjct: 168 ATGIQKLGLGMSRGK----------GVIDTGRLDPALVKVINQLPPGEPFVLPSNGQYVA 217

Query: 270 IAICDKRDLGGEIALKAYLSAQNTPTK-IEKHEAEYVKKLRSNAIIHY 316
             I  +        +    +A+    K +       V + R++A I Y
Sbjct: 218 SVIVGRDATPTPTPIARQAAAEMVRRKELVAESKAQVARARTSAEIQY 265


>gi|117619758|ref|YP_856089.1| peptidyl-prolyl cis-trans isomerase C [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561165|gb|ABK38113.1| peptidyl-prolyl cis-trans isomerase C [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 92

 Score = 54.3 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQN 255
             +K   + +E   +        ++F++       G      + D+   F + + K    
Sbjct: 12  KTEKECLEIKEKIAKGADFGQMAKRFSTCASSKRFGDLGEFSKGDMVKAFDDAVFKGELL 71

Query: 256 NTTNPYVTQKGVEYIAIC 273
               P  T+ G   I + 
Sbjct: 72  TVLGPVRTKFGFHLIKVL 89


>gi|227513558|ref|ZP_03943607.1| peptidylprolyl isomerase [Lactobacillus buchneri ATCC 11577]
 gi|227083431|gb|EEI18743.1| peptidylprolyl isomerase [Lactobacillus buchneri ATCC 11577]
          Length = 293

 Score = 54.3 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 80/280 (28%), Gaps = 37/280 (13%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           +I     ++S+   A  S+   T NG  IT+                    K  +Q++I+
Sbjct: 5   LIVLAGVLMSFTLAACGSKSVATTNGGKITES-------AYYSSLKGTSSGKQVLQQMIL 57

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
             + +++  K       + VN  F ++ +  G S              +      L    
Sbjct: 58  NKVLEKQYGKK---VKESAVNKDFNKYKKQYGSSFNAVL-------QQNGMTASQLKDSI 107

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
               +++          + ++ A           +  +  +L S           ++   
Sbjct: 108 RSNLLLQQAVRDNTKFTDAQLKA----QFKSYQPKVTVNQILVSKKSTAETVIKQLKA-- 161

Query: 203 KDAEESRLRLPKDCNKLEKFASK-IHDVSIGKA---QYLLESDLHPQFQNLLKKSQNNTT 258
                         +  +K+++        G+         S      +   K    + T
Sbjct: 162 ---------GKSFSSLAKKYSTDTATKNKGGRISAFDNTNTSLDSNFKKAAFKLKNGDYT 212

Query: 259 N-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
             P  TQ G + I + +    G     ++ L  Q    ++
Sbjct: 213 KTPVKTQYGYQVIQMVNHPAKGTYKDHESELKTQLVDKRL 252


>gi|163815686|ref|ZP_02207058.1| hypothetical protein COPEUT_01866 [Coprococcus eutactus ATCC 27759]
 gi|158448991|gb|EDP25986.1| hypothetical protein COPEUT_01866 [Coprococcus eutactus ATCC 27759]
          Length = 335

 Score = 54.3 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/310 (8%), Positives = 79/310 (25%), Gaps = 22/310 (7%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
            +I   +V      +      +    NG+ I   ++      +K +  +   + +  Q +
Sbjct: 5   CVIGMMLVGCGGNGNADTEKEVVFRYNGQDIYIDEVYVYARTVKERYESKYGKDVWGQSI 64

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           + +   +   E S      + +        ++         S    Q      F + L  
Sbjct: 65  VTDDGLEMNAEDSARRETISRIVKTKTLITKSDEYGISLTDSEQRMQEQDAEKFYELLTD 124

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF------SIPDNKLQN 194
           + I    ++ + + +              +   +  E                      +
Sbjct: 125 EQIAEVGLEENTVKQVLEESALADKIYTYVMKQSSTEISDEQARMSTFYDMFFECYSEDD 184

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ-----------YLLESDLH 243
            G +    +   + + +   +        S   +++I                +   ++ 
Sbjct: 185 FGNITLYPQSKIDVQKKKADEAYAAIVEESDNSNLNISFLGSAKSLKYAGTHTMSRDEIV 244

Query: 244 -----PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE 298
                     L   S  + +    T+ G     +    D       K  L+        +
Sbjct: 245 STYGQDTLDILYSLSDGDISPVVQTEYGYHIFQMISLTDETATAENKEKLTEAADGEYYD 304

Query: 299 KHEAEYVKKL 308
              ++++ +L
Sbjct: 305 NLMSDWIDEL 314


>gi|227530453|ref|ZP_03960502.1| peptidylprolyl isomerase [Lactobacillus vaginalis ATCC 49540]
 gi|227349631|gb|EEJ39922.1| peptidylprolyl isomerase [Lactobacillus vaginalis ATCC 49540]
          Length = 310

 Score = 54.3 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/279 (11%), Positives = 66/279 (23%), Gaps = 25/279 (8%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELI 81
           LI       +     A  S+   T +G  IT  +    +             K  +Q++I
Sbjct: 6   LIAMIACATLVLPLAACGSKAVATTSGGKITQEEYYNEMK-------TTTNGKQVLQQMI 58

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
           ++ + ++E  K       N                   + S            ++ L  Q
Sbjct: 59  LDKVLEKEYGKQVSDKQVN----------AQYNTYKNQYGSQFSAVLQQQGLTEKKLKQQ 108

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
                 ++            +I             +     +L    D+       +   
Sbjct: 109 IRSNLCLEAAVRSYTHITNAQINKQW----KKYEPKVQTAEILVGSKDDAQSIIDQLNNS 164

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT-NP 260
               +  +  +          ++K     +        S      +   K      T  P
Sbjct: 165 DHPYKTFKKLVKSKSTDA---STKNAGGKVAAFDNTSTSVDSAYKKAAFKLKTGEYTTEP 221

Query: 261 YVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
             T  G   I + +    G +      L  Q    K+  
Sbjct: 222 VKTDDGYVVIYMIEHPAKGKKSQHINDLKTQIVQEKMND 260


>gi|308066898|ref|YP_003868503.1| Parvulin-like peptidyl-prolyl isomerase [Paenibacillus polymyxa
           E681]
 gi|305856177|gb|ADM67965.1| Parvulin-like peptidyl-prolyl isomerase [Paenibacillus polymyxa
           E681]
          Length = 310

 Score = 54.3 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/313 (9%), Positives = 85/313 (27%), Gaps = 35/313 (11%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSR-----IRTTINGEVITDGDISKRIALLKLQKIN 69
           ++ T  V  +  ++ +         S+         +  E I++      +         
Sbjct: 13  IILTVSVAALGGLIMLRGLSKPGDVSKDDGDHTVAEMGQEGISEEQWVAELK-------- 64

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
                  + +++     + E ++ GI      +     Q ++      +   ++ D+   
Sbjct: 65  KRYGTDTLLQMLNRKAVQAETKRLGIKITQEDLQQVLEQDSK----GYDSDHAYFDEMQR 120

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                   L  ++ +   ++          E EI    ++          I+     + +
Sbjct: 121 QFGLDPVDLRNEAEYRIGLEKIATQGIQVQEAEIDEYWEQHPEEFAVGKQIQLAALYVDN 180

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES---DLHPQF 246
            +       + +  ++ +  ++        +  +        G+  ++ E          
Sbjct: 181 AEEAEALLDRVKQGESFDVLIQEYSGKPFGKDSS--------GQLGWVDEYDPLQPEAIM 232

Query: 247 QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE---AE 303
           +   + S  +   P     G   I + D R        K  +  Q   +          E
Sbjct: 233 KAARELSSGDVAGPISVNDGYAVIYVQDVR--LKNSPDKQQIRQQIRRSLALAQAAPLEE 290

Query: 304 YVKKLRSN--AII 314
             K LR    A I
Sbjct: 291 VEKSLRDKYGARI 303


>gi|262341372|ref|YP_003284227.1| peptidylprolyl isomerase [Blattabacterium sp. (Blattella germanica)
           str. Bge]
 gi|262272709|gb|ACY40617.1| peptidylprolyl isomerase [Blattabacterium sp. (Blattella germanica)
           str. Bge]
          Length = 410

 Score = 54.3 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/284 (11%), Positives = 88/284 (30%), Gaps = 15/284 (5%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSG 94
           S+     I   +  E+I D +I         +    +L+ + +++L++   KK    +  
Sbjct: 25  SFEKLEGIYAIVGNEIILDSEI----KTKNSKNCLDDLDDLLIEKLMLYHAKKDVSIQIS 80

Query: 95  ITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
                     F  + ++      E       K+       +       ++ +        
Sbjct: 81  NQELELKTQAFLSEMSKKYANQEEFLIQQFKKKEWIPKLTETIKNH--LYIEKFYQKITD 138

Query: 155 KYGNLEMEIPANKQKMKNITV---REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                  E+     K K+      ++  I  ++     +++     +    K  +E    
Sbjct: 139 NVEISPKEVKYFFTKNKSKIPFLPKKMCISYLVCIPKLSQMNRMKIIDFLKKIKKEIHSD 198

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
           +      +          + G  Q +  + L  +F++++   S+   + P+ T  G   I
Sbjct: 199 IDFSIQAILFSEDNYSASNGGLIQGIKINRLSKEFKHVVLSLSEKEISEPFETDSGFHII 258

Query: 271 AICDKRDLGGEIALKAYLSAQNTPTKIE-KHEAEYVKKLRSNAI 313
            +   +    +     ++  +   TK E +    +V  ++    
Sbjct: 259 KLEKNK----DEVDLRHILIKPKYTKHELRKTKSFVDSIQKRIF 298


>gi|307726909|ref|YP_003910122.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1003]
 gi|307587434|gb|ADN60831.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1003]
          Length = 250

 Score = 54.3 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/270 (11%), Positives = 73/270 (27%), Gaps = 26/270 (9%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              I+ EV+   D+++ I LLKL            + LI + ++ +    +         
Sbjct: 4   IVRIDDEVV---DVAEFIRLLKLTGQ--------FESLIEQIVRDKLTVHAAKKQGIVVT 52

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                + A           +    Q +   +         I   + +   + +    E  
Sbjct: 53  ADEIQERADQFRRVRGLHRATDMNQYLDVLNVSLDEFEAFITDGLYQEKMLDQV-GNEAA 111

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +               +   VL S             K  +     R       +   + 
Sbjct: 112 VRDYFALNSPKFDAIEVSHIVLDSEG-----------KAKEMISYLRDDPESFADMAREH 160

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQ-NLLKKSQNNTTNPYVTQKG--VEYIAICDKRDLG 279
           +      + G    +L   L P  +  +   +  +   P+ +      E  A+  K    
Sbjct: 161 SIADTREAGGVIGKVLRGSLKPDIEAKIFNAAVGDLLGPFPSADRSCFEIFAVTAKYPAT 220

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
            +  + A +      + +     E+V + R
Sbjct: 221 LDADVAAEVRRLLRESWLIARAQEHVIEAR 250


>gi|160896561|ref|YP_001562143.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Delftia acidovorans
           SPH-1]
 gi|160362145|gb|ABX33758.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Delftia acidovorans
           SPH-1]
          Length = 300

 Score = 54.3 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/207 (8%), Positives = 51/207 (24%), Gaps = 7/207 (3%)

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
             A      L       +              +++    L     +              
Sbjct: 80  RQAAQREGLLGADDAAGDDGVISERASQAIEQLLEQSLHLPEPGEDACRRHFDANPARFA 139

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR---LRLPKDCNKLEKFASKIHDVSI 231
             E +    +       +  +   Q+      E R       +      ++++       
Sbjct: 140 QGERVRLRHVLFAVTPGVDVRALTQRAEALLIELRCADDAGLRFAEAARQWSNCPSGQHG 199

Query: 232 GKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAY 287
           G+  +L  SD  P+F   +   +          ++ G+  + +C +           +  
Sbjct: 200 GELGWLGRSDCAPEFARDVFASQEIGVLPRLVHSRFGLHVVEVCAREAGVLPDWQQARPA 259

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAII 314
           ++             +Y++ L   + +
Sbjct: 260 VAQALHQQTWVSALHQYLQLLAGQSEV 286


>gi|194766868|ref|XP_001965546.1| GF22548 [Drosophila ananassae]
 gi|190619537|gb|EDV35061.1| GF22548 [Drosophila ananassae]
          Length = 173

 Score = 54.3 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/142 (6%), Positives = 27/142 (19%), Gaps = 1/142 (0%)

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                +     +        +      G    + P   Q +  +   +   R   +   +
Sbjct: 28  HTKESQWDQPTEPAKKAGASSGGGASGGGSGGDAPDEVQCLHLLVKHKGSRRPSSWREEN 87

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL-HPQFQN 248
                +           +              ++        G         +  P  + 
Sbjct: 88  ITRTKEEAQLLLEVYRNKIVQGEATFDELARSYSDCSSAKRGGDLGTFGRGQMQPPFEKA 147

Query: 249 LLKKSQNNTTNPYVTQKGVEYI 270
               +    +    T  G+  I
Sbjct: 148 AFGLNVGQLSGIVDTDSGLHII 169


>gi|38258251|sp|Q9LEK8|PIN1_DIGLA RecName: Full=Peptidyl-prolyl cis-trans isomerase Pin1;
           Short=PPIase Pin1; AltName: Full=DlPar13; AltName:
           Full=Rotamase Pin1
 gi|8670992|emb|CAB94994.1| peptidyl-prolyl cis-trans isomerase [Digitalis lanata]
          Length = 118

 Score = 54.3 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/115 (9%), Positives = 26/115 (22%), Gaps = 1/115 (0%)

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
               ++ A+   +K+   R             +       V +     +E         +
Sbjct: 1   MSSEKVRASHILIKHQGSRRKSSWKDPDGSLISATTRDDAVSQLQSLRQELLSDPASFSD 60

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
              + +        G         +   F+           ++   T  GV  I 
Sbjct: 61  LASRHSHCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEISDIVDTDSGVHIIK 115


>gi|325479322|gb|EGC82418.1| conserved domain protein [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 303

 Score = 54.3 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/327 (9%), Positives = 84/327 (25%), Gaps = 43/327 (13%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL--- 65
           + +   +        I   + +   K  +  +     ++G+ I+  D SK +   +    
Sbjct: 1   MKNLRAITNKLIFYAILAFLVLTGCKRSSNKTDAVAVVDGKEISSKDYSKELKFYQSYYS 60

Query: 66  ---------------QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
                             +  L K  +  +I + +   ++EK+ I  D N V        
Sbjct: 61  KLYGDNYLSEKNKNGLTNDEILRKELLDSMIKDKIMLSDLEKNKIKLDDNNVIKLTDNLK 120

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
           ++        ++       G+   +             +     +       +   K+  
Sbjct: 121 KSMNGEDSLGANVDALNANGNLFNEIIFNDAIRKSHY-EMFVSKQSVRDSDVLDFYKKNK 179

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS 230
           K   + +Y +           ++      K+  +     +R     N    ++       
Sbjct: 180 KYQKMYKYNLIVFDDENEAKDIKKNITNAKKFNEYLNKSVRNYDIVNSEFAYSDD----- 234

Query: 231 IGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA 290
                           +      +N  ++ +          I            +  L  
Sbjct: 235 -------------EVLKASKLTEKNRPSDVFKYNDKYIIAMIN------SYNENENELLM 275

Query: 291 QNTPTKIEKHEAEYVKKLRSNAIIHYY 317
                  +K   +Y+ KL  ++ I  Y
Sbjct: 276 NAKSVYQKKAYEDYLNKLIKSSKIKVY 302


>gi|47211406|emb|CAF94222.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 129

 Score = 54.3 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 23/83 (27%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------LLKKS 253
           +  +A E      +      +++        G   ++    +   FQ             
Sbjct: 48  KSMEAMEKLKAGVRFSEVATQYSED-KARQGGDLGWMTRGSMVGPFQEAAFALPISSMDK 106

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
              T  P  T+ G   I +  K+
Sbjct: 107 PVYTDPPVKTKFGYHIIMVEGKK 129


>gi|85858466|ref|YP_460668.1| peptidyl-prolyl cis-trans isomerase [Syntrophus aciditrophicus SB]
 gi|85721557|gb|ABC76500.1| peptidyl-prolyl cis-trans isomerase [Syntrophus aciditrophicus SB]
          Length = 533

 Score = 54.3 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/195 (10%), Positives = 59/195 (30%), Gaps = 17/195 (8%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +     +++       ++++F        ++    S     ++G+ I   ++ K  
Sbjct: 1   MLELMRKHAKNWLMKFLLGMIIVVFIF--YFGTRTGKEKSETVAIVDGKEIALAEVQKEY 58

Query: 61  ALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
           + L                    EL++ A+  LI + +  Q+  +  +T   + V  F +
Sbjct: 59  SNLAEFYRRQYGGSLTDEMLKGLELKQNALDSLIAQAIIMQKAGELNLTATDDEVRNFIM 118

Query: 108 QH--ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
            +   +  G   E     + +         +    + +    ++          + E+  
Sbjct: 119 AYPAFQRDGTFNEKIYQQMLRLNRMTPEEFEASQQRMLSAAKLEQLIQEAVKVSDQEVFD 178

Query: 166 NKQKMKNITVREYLI 180
                       YL+
Sbjct: 179 FFSFQNEQIKISYLM 193


>gi|89885882|ref|YP_516080.1| hypothetical protein Rfer_4396 [Rhodoferax ferrireducens T118]
 gi|89347880|gb|ABD72082.1| hypothetical protein Rfer_4396 [Rhodoferax ferrireducens T118]
          Length = 274

 Score = 54.3 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/219 (9%), Positives = 66/219 (30%), Gaps = 3/219 (1%)

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
            +   V    +         A    S+++K         +   ++     ++    +L  
Sbjct: 56  VNGEPVYEIELASMLQNMPHAVAVDSYINKVLSAQAAKTESAGLEVAARRLMAEREVLSN 115

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
                      + + +  + ++  R +  S+      +  F+    +DA +  L+L +  
Sbjct: 116 LYFSRIGEREVKGVSDAEIDQFYQRNLSDSMFARIGASY-FLSATDEDATQFALKLREGD 174

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
            +         + +     +      +   + +        +    T+ G   + + +  
Sbjct: 175 KEAAAKLKPFLNPAGKAIAFAPADFPYDMGKLIQTMKVGEVSGSLATRNGFFVVRVDEV- 233

Query: 277 DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            + G+      +  Q     + +   E +++LR  A I 
Sbjct: 234 -VPGKRPAIKEIKEQLRSALVNQRVGEKLQQLRKGAKIE 271


>gi|256599527|pdb|2ZQT|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
           Cis-Trans Isomerase
          Length = 163

 Score = 54.3 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 8/103 (7%), Positives = 24/103 (23%), Gaps = 1/103 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +       R   +         +  ++      ++ +       +   +F+     
Sbjct: 57  CSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSA 116

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            + G             F++          + P  T  G+  I
Sbjct: 117 KARGDLGAFSRGQAQKPFEDASFALRTGEMSGPVFTDSGIHII 159


>gi|171463604|ref|YP_001797717.1| hypothetical protein Pnec_0905 [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193142|gb|ACB44103.1| conserved hypothetical protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 482

 Score = 54.3 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/256 (8%), Positives = 70/256 (27%), Gaps = 27/256 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   V       ++ +    ++  F    + SY S+         +NG+ IT  ++    
Sbjct: 1   MFDTVR-KHQRILQFVLMLLIVPSFAFFGVSSYSSFLDKETDLVKVNGKSITAQEVDMAA 59

Query: 61  ALLKLQ-------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ----- 108
                +         + +  +  + EL+ + +    +    +      +           
Sbjct: 60  KRQAERVGGNVQIAQSLQFRQAILNELLQQRILGFAVSDLRLQVGKEALVKSLQNIPQIR 119

Query: 109 --HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------NDFML 154
             + ++       F   L   G+ +  F    A       +V             ++ + 
Sbjct: 120 ALYKQDGSFDDARFKQLLASNGLNEGQFYAGQAFDLKISQLVNSVARTEIGSPKLSEIVS 179

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
               +E ++       K+   +    +  L +      +     +    +    +    +
Sbjct: 180 TLYEMERQVQIMPFDAKDYLSKVNPSQEELQAFYAANSKLFESPEYVDVEYIVLKADSKE 239

Query: 215 DCNKLEKFASKIHDVS 230
           D     + A +   ++
Sbjct: 240 DAKVFSEKADQFTKIT 255


>gi|326431789|gb|EGD77359.1| parvulin-type peptidyl-prolyl cis-trans isomerase [Salpingoeca sp.
           ATCC 50818]
          Length = 149

 Score = 54.3 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 35/111 (31%), Gaps = 11/111 (9%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR--LPKDCNKLEKFASKIHDVSIGK 233
               +R +L       +Q    +++  K A+  + +           +F+      S G 
Sbjct: 40  TNVEVRHILCEKHSKAMQALEQLRQAYKPADGGKPQTGYSTWIKVASEFSED-KAKSGGN 98

Query: 234 AQYLLESDLHPQFQNLLK-----KSQNNTT---NPYVTQKGVEYIAICDKR 276
             ++    +   FQ+        K          P  T+ G   I + +K+
Sbjct: 99  LGWMARGSMVGPFQDAAFALEVSKPNGPVIFTDPPVKTKFGYHIIMVTNKK 149


>gi|193084249|gb|ACF09911.1| peptidyl-prolyl cis-trans isomerase ppiD [uncultured marine group
           III euryarchaeote KM3-28-E8]
          Length = 631

 Score = 54.3 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/249 (6%), Positives = 57/249 (22%), Gaps = 15/249 (6%)

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
            +          +  L  E    + +     ++++      +++   +   + E      
Sbjct: 153 SRLRQELSRAQVLGSLTSEVPVSEVLTNRLYSWNAEKRVAAYIKIQHDAIANIEKPDDAA 212

Query: 125 DKQGIGDNH--FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
            ++    N   F       + +  +   D        + +I     +  +          
Sbjct: 213 LQEYYKGNESLFTAPEYRSATYVHLTGKDVESDIDVSDADIQKLYDQNIDAFKVPERRTV 272

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
                      +     K                  L +      ++       + +  L
Sbjct: 273 QQMIF------STEEEAKTGAAHLAEGKTFAAVAKDLLRQDEDATNI----LGDVTKIHL 322

Query: 243 HPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEI--ALKAYLSAQNTPTKIEK 299
                + +   S    T P     G   + +   +    +    ++  + AQ    +  +
Sbjct: 323 PDTLAEAVFNLSDGQVTPPLEGPFGWYVMRVTAIKAPKTQQLLEVRIDIRAQLVQERSGE 382

Query: 300 HEAEYVKKL 308
              +    L
Sbjct: 383 ALYKLSNDL 391


>gi|90961451|ref|YP_535367.1| peptidylprolyl isomerase [Lactobacillus salivarius UCC118]
 gi|227890540|ref|ZP_04008345.1| peptidylprolyl isomerase [Lactobacillus salivarius ATCC 11741]
 gi|122449241|sp|Q1WUQ1|PRSA_LACS1 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|90820645|gb|ABD99284.1| Peptidyl-prolyl cis-trans isomerase [Lactobacillus salivarius
           UCC118]
 gi|227867478|gb|EEJ74899.1| peptidylprolyl isomerase [Lactobacillus salivarius ATCC 11741]
          Length = 296

 Score = 54.3 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 81/281 (28%), Gaps = 34/281 (12%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVE 83
           +  I  IV     A  S+   T +G  IT+ +    +             K  +Q++I+ 
Sbjct: 6   LVAISGIVLTFGLAACSKTVATTSGGKITESEYYSSMK-------KTSSGKQVLQQMILN 58

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            + ++E          N                 + + S  D     ++  K     +  
Sbjct: 59  KVLEKEYGSKVSDKKVN----------EQYNTYKKQYGSSFDSVLAQNDMTKSSFKQEIR 108

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
              ++K            ++ A  ++ +                  + L ++    + I 
Sbjct: 109 SNLLLKEAVKDNTKITNKQLKAQWKEYEPK------------VTVAHILVSKKSTAEDII 156

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVS-IGKAQYL--LESDLHPQFQNLLKKSQNN--TT 258
           +  +            +K+++     +  GK       ++ L   F+      +    TT
Sbjct: 157 NKLKEDGSYANFKKLAKKYSTDSSTKNDGGKLAAFDNTDTSLDSTFKKAAFGLKQGSFTT 216

Query: 259 NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
            P  T+ G   I        G      + L +Q   +K+  
Sbjct: 217 EPVKTEYGYHVIYSIKNPGKGKMSDHTSELKSQIIDSKMSD 257


>gi|13786637|pdb|1EQ3|A Chain A, Nmr Structure Of Human Parvulin Hpar14
          Length = 96

 Score = 54.3 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------LLKKS 253
           +I +A E      +      +++        G   ++    +   FQ             
Sbjct: 15  KIMEAMEKLKSGMRFNEVAAQYSED-KARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDK 73

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
              T  P  T+ G   I +  ++
Sbjct: 74  PVFTDPPVKTKFGYHIIMVEGRK 96


>gi|313637843|gb|EFS03178.1| foldase protein PrsA 1 [Listeria seeligeri FSL S4-171]
          Length = 160

 Score = 54.3 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/122 (12%), Positives = 37/122 (30%), Gaps = 4/122 (3%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLK--KSQN 255
           +   K+ +       K  +  +++++      + G        ++   F+      +  +
Sbjct: 15  EATAKEVQTKLKNGEKFTDLAKEYSTDTATSTNGGLLDPFGTGEMDEAFEKAAYALEKTD 74

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA-QNTPTKIEKHEAEYVKKLRSNAII 314
           + +    T  G   I +  K D       KA +           ++    +KK    A I
Sbjct: 75  DVSGIVKTSYGYHLIQLVKKIDKTTYAKDKAKVKEAYIQSQLTSENMTAALKKELKAANI 134

Query: 315 HY 316
             
Sbjct: 135 DI 136


>gi|295132519|ref|YP_003583195.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zunongwangia
           profunda SM-A87]
 gi|294980534|gb|ADF50999.1| PpiC-type secreted peptidyl-prolyl cis-trans isomerase
           [Zunongwangia profunda SM-A87]
          Length = 702

 Score = 54.3 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 26/112 (23%), Gaps = 10/112 (8%)

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD-VSIGKAQYLLESDLHPQFQNLLKK 252
                Q     A   +    K      +F+       + G   Y     + P F + +  
Sbjct: 368 ESAAKQLADSLAGVIKADKSKMAALATEFSDDPSAAQNSGDLGYFRPGMMVPTFDDFVLN 427

Query: 253 SQNNTTNPYVTQKGVEYIAIC---DKRDLGGEIALKAYL------SAQNTPT 295
           +   T     T  G   I I    D+        +   +        +    
Sbjct: 428 NNEGTVGVVETDFGYHVIYIEEQTDREKAVKIATVAREIDATEGTRNKLFNE 479



 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 52/154 (33%), Gaps = 6/154 (3%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
            +K+    S F+ +L     L  F +  ++    ++       T+NGE I+  + ++++ 
Sbjct: 4   LNKIRQR-SVFL-ILIIALALFSFVLADVIRSGGFSGKDNSIATVNGEEISREEFARQVE 61

Query: 62  LLKLQKINGELEKIAVQELIV----ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
             +           AV  +      + + ++++EK GI  +   V               
Sbjct: 62  AYQQNMRGNISTTQAVNRVWDQELNQIIVEEQVEKLGIRAEQAQVRQMMRAQMSQNPQFT 121

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
            +   F + +        +  + Q     +   +
Sbjct: 122 NEAGMFDENRVKEYVASLKQTSPQMYQQWLSYEE 155



 Score = 42.7 bits (98), Expect = 0.079,   Method: Composition-based stats.
 Identities = 15/120 (12%), Positives = 36/120 (30%), Gaps = 1/120 (0%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN 255
              +  I   + S   + +      K     + V++                 +      
Sbjct: 577 KQKKAEIIKEKISGTTVDQVAENQNKIVQTANAVNLSSPTLAGAGSEPEVVGAVYALGVG 636

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            T+ P V  KGV  + +  K +     + K +   + +  +   +     + L++ A I 
Sbjct: 637 ETSKPIVGDKGVYVVELVSKSEAPELDSYKPFAQQETSSRRQMANSRA-FEALKAKAEIE 695


>gi|331000016|ref|ZP_08323712.1| PPIC-type PPIASE domain protein [Parasutterella excrementihominis
           YIT 11859]
 gi|329573164|gb|EGG54781.1| PPIC-type PPIASE domain protein [Parasutterella excrementihominis
           YIT 11859]
          Length = 268

 Score = 54.3 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 63/238 (26%), Gaps = 17/238 (7%)

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           + +  +  ++       D                L  E        Q             
Sbjct: 32  VADQQELMKVLADRGVKDQKQQLEAARSILAQEKLIEEAAKKANIAQDPAVKALIAERQT 91

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           +    ++V+ +               ++  K     E  +R +L              ++
Sbjct: 92  EIYSAELVRKNAAAHPLTDADLKKTYEEVKKQYDPNEIKVRHIL-----------VKTEQ 140

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQY--LLESDLHPQFQNLLKKSQNNT 257
             KD  +S           ++ +         G+  +  +    +    +  +  ++   
Sbjct: 141 EAKDIIKSLNAGGDFATIAKEKSLDQGTAAQGGEIPFTNIRRIAIPGFAETAMALNKGAL 200

Query: 258 TN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              P+ +  G   I + DKR++         L  Q      ++   +Y+  L  NA I
Sbjct: 201 LPVPFHSALGYHVIQLQDKREVPL--PSFDALKPQIQNLAAQRQAQQYMADLMKNAKI 256


>gi|38258219|sp|Q94G00|PIN1_MALDO RecName: Full=Peptidyl-prolyl cis-trans isomerase Pin1;
           Short=PPIase Pin1; AltName: Full=MdPin1; AltName:
           Full=Rotamase Pin1
 gi|15077233|gb|AAK83088.1|AF290200_1 Pin1-type peptidyl-prolyl cis/trans isomerase [Malus x domestica]
          Length = 121

 Score = 54.3 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 8/76 (10%), Positives = 20/76 (26%), Gaps = 1/76 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQN 255
            V +     ++      K  +   +++        G       + +   F+         
Sbjct: 43  AVSQLKALRDDILSGKAKFDDLAARYSDCSSAKRGGDLGPFGRNQMQKPFEEATFALKVG 102

Query: 256 NTTNPYVTQKGVEYIA 271
             ++   T  GV  I 
Sbjct: 103 EMSDIVDTDSGVHIIK 118


>gi|300775367|ref|ZP_07085229.1| possible peptidyl-prolyl cis-trans isomerase [Chryseobacterium
           gleum ATCC 35910]
 gi|300506107|gb|EFK37243.1| possible peptidyl-prolyl cis-trans isomerase [Chryseobacterium
           gleum ATCC 35910]
          Length = 717

 Score = 54.3 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 75/280 (26%), Gaps = 20/280 (7%)

Query: 51  ITDGDISKRIALLKLQKINGELEKI------AVQELIVETLKKQEIEKSGITFDSNTVNY 104
           +T  D++  I    +         I      +      +    +EI K        +   
Sbjct: 215 VTTQDLADYIKKHPVMFKAEPSRNIGIVFFPSKPSAADDAAALKEITKLYSGGTDASGGT 274

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
              Q+ +N  +     S         +           I    V   F       E ++ 
Sbjct: 275 ENFQNTKNDSMFVTANSDAPFNPQYLNPAQLPPTIKDQITSAAVGQTFGP---YKEQDVY 331

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQN-----QGFVQKRIKDAEESRLRLPKDCNKL 219
              + +        L R +L +   +         +   +K            P    + 
Sbjct: 332 VVSKLVGKRPSDSTLSRHILIAFKGSPAGEGVTRTKEQAKKLADSIGAIVKATPAKFTEF 391

Query: 220 EKFASKI-HDVSIGKAQYLLESD-LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
            K +S        G   +        P+F   L  +    T    TQ G   I I DK+ 
Sbjct: 392 LKLSSDPNSAAQGGSLGWTTPETPFVPEFLAYLANNPKGATGVVETQFGYHIINIEDKKS 451

Query: 278 LGGEIALKAYLSAQ----NTPTKIEKHEAEYVKKLRSNAI 313
                 +   + A      T  + +K   +++++++  + 
Sbjct: 452 GSMGYKVANLVKAIKPSDATEAETDKKSRKFIQQVQGKSF 491



 Score = 47.4 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 7/151 (4%)

Query: 8   SLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ- 66
               ++ +      L+ F + P    K +  +  +   +NGE IT  + + ++ +L+ Q 
Sbjct: 8   RSKPWLLMGVIALALLAFLVNPDSIDKVFGKNPDVLGKVNGEKITREEFNDQLFVLQQQA 67

Query: 67  ----KINGELEKIAVQELIVETLKKQEIEK--SGITFDSNTVNYFFVQHARNTGLSAEDF 120
               +    LE+ A Q L+   L KQ+ EK    +T D       + Q         ++ 
Sbjct: 68  EQQGRPKNGLEEQAWQLLVQSKLIKQQFEKLGFEMTDDYFWNQIQYDQMFAQNQQFFDEK 127

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
            +F  ++   +    Q    Q     +    
Sbjct: 128 GNFKTQELKKEIETLQNTNPQGYAQWLKTRK 158


>gi|171059049|ref|YP_001791398.1| peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii SP-6]
 gi|170776494|gb|ACB34633.1| peptidyl-prolyl cis-trans isomerase, EpsD family [Leptothrix
           cholodnii SP-6]
          Length = 299

 Score = 54.3 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/293 (10%), Positives = 75/293 (25%), Gaps = 42/293 (14%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE--KIAVQELIVET 84
           ++          ++++   +N E I+   I+  +      K        K  ++ LI + 
Sbjct: 27  MLVACGGGDKKGATQVAAKVNKEEISVHQINFVLQRQPGLKPEQAPAATKAVLEGLIDQE 86

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
           L  QE ++  I  D   V                                 +    + + 
Sbjct: 87  LAIQEAQEQKIDRDPKVVMAI------------------------------EAAKREILA 116

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
                          + EI A  +    +  +  +     FSI       +         
Sbjct: 117 RAYADKLADTVSKPTDDEIAAYYKDKPALFAQRRVYTLHEFSIEAAGDAAKNVTALVQAA 176

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQ 264
                L        ++  +  +              +L     + +       +    + 
Sbjct: 177 KSSDELSKQLTAASVKFASRVVTQ---------PAENLPLAMIDRIGSLAEGQSLAIPSA 227

Query: 265 KGVEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            G+  + +   +         K  +       +  K  A+ +K+LR +A I Y
Sbjct: 228 NGISAVFVAAAKPQPVTAEQAKPAIEQFLLNDRKRKLVADEMKRLRGSAKISY 280


>gi|297568379|ref|YP_003689723.1| hypothetical protein DaAHT2_0398 [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924294|gb|ADH85104.1| hypothetical protein DaAHT2_0398 [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 559

 Score = 54.3 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/270 (11%), Positives = 84/270 (31%), Gaps = 17/270 (6%)

Query: 57  SKRIALLKLQKINGELEKIAV-----QELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
            +R+A L +   +       +     Q L              +  D+          A 
Sbjct: 281 EQRLAELDINAPDDAFGDEVLVATSRQNLTERDFIAMVRRDMTMRPDAAHA-------AF 333

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
           +   +AE     +D          + LA      +  K ++     +        +    
Sbjct: 334 DEEKAAEIKDRVVDGFIAQSLTNWESLARGYEKREPFKGEYDFHVNHRLSVTLERRLFAD 393

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
            + V + ++R        +  +        I + E    ++  +    ++F+  + +   
Sbjct: 394 QVKVDDDMVRRHYEENLAHFSRPAHVRLNIITNDEGPVNQVWAEVVAGKEFSRAVQEHFG 453

Query: 232 GKAQ--YLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK--RDLGGEIALKA 286
            +     +  + L P+ + +++K +   T+ P+  Q     + + D+   +      +  
Sbjct: 454 RRIPGQEVPINHLDPRVRGVVEKLAPGETSAPFDAQGSRVVVHLIDRVPENPLPFERVAG 513

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            +  +    K  +    Y+ +LR+ + I  
Sbjct: 514 NIRDRLVREKTAQLRQSYLDQLRARSRIEI 543



 Score = 38.5 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 7/84 (8%), Positives = 24/84 (28%), Gaps = 3/84 (3%)

Query: 236 YLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQN 292
           +     + P + +      +    +P     G+    + + +  D      ++  L    
Sbjct: 196 WHRPQGIAPGWAEIFNNMEKGEVADPEKHHGGLMLFHLKEVKGGDAEDFQRMRESLHRDV 255

Query: 293 TPTKIEKHEAEYVKKLRSNAIIHY 316
              +      + + +LR    +  
Sbjct: 256 WKEQEAALTRQLLAELRRKYQVEI 279


>gi|298207424|ref|YP_003715603.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Croceibacter
           atlanticus HTCC2559]
 gi|83850060|gb|EAP87928.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Croceibacter
           atlanticus HTCC2559]
          Length = 700

 Score = 54.3 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 1/104 (0%)

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
            +   Q     A   R    K  +    ++  K+     G   +     + P F + + +
Sbjct: 366 EEEAKQLADSLASVLRRDRNKFTDFATTYSADKVSGAKGGDLGFFTPGRMVPVFNDYVFQ 425

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK 296
           +         +Q G   I I ++ D    + L   +       K
Sbjct: 426 NNEGDLGVVKSQFGFHIIDIQEQTDKEKAVKLATIVREIEASEK 469



 Score = 43.5 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 68/240 (28%), Gaps = 7/240 (2%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
            +K+       I ++       +   V      S +       T+ GE I   + +K++ 
Sbjct: 4   LNKIRERSIFLIIIIALALFSFVLADVIRNGGFSSSKGENTVATVGGENIDRTEFAKQVD 63

Query: 62  LLKLQKINGELEKIAVQEL----IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
           L   Q         AV  +    + E +  Q+ EK GI      +              +
Sbjct: 64  LYSKQLGPNASTMQAVNRVYDAKVREVVLAQQFEKLGIEVSPEQLKATMALQLEGNPTFS 123

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
           ++  +F +++        +  + Q+        ++  +      E          +    
Sbjct: 124 DENGTFSEQKLQEYLANIKASSPQAYEQW---KNYEDQVALAAKETQYFNMIKAGVGATL 180

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
              +       +        +     D  E+++   +    ++    K    +    QY+
Sbjct: 181 LEGKQAYLLENNTVDVEYVKIPWTAVDESEAQVSKDEIKAYIKAHPDKYTVEAGRDLQYV 240


>gi|193083971|gb|ACF09646.1| peptidyl-prolyl cis-trans isomerase ppiC [uncultured marine
           crenarchaeote AD1000-56-E4]
          Length = 91

 Score = 54.3 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 22/76 (28%), Gaps = 1/76 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQN 255
             Q +     E   +  K      + ++       G   Y  +  +  +F +   K    
Sbjct: 13  EKQSQALQLLEEIKKGKKFGAVAREVSTCPSSKKDGDLGYFTKGMMVKEFDEVAFKLQIG 72

Query: 256 NTTNPYVTQKGVEYIA 271
             + P  TQ G   I 
Sbjct: 73  EVSEPVKTQFGYHLIK 88


>gi|192360509|ref|YP_001982979.1| putative peptidyl-prolyl cis-trans isomerase D [Cellvibrio
           japonicus Ueda107]
 gi|190686674|gb|ACE84352.1| putative peptidyl-prolyl cis-trans isomerase D [Cellvibrio
           japonicus Ueda107]
          Length = 284

 Score = 54.3 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/315 (8%), Positives = 80/315 (25%), Gaps = 46/315 (14%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSY----KSWAMSSRIRTTINGEVITDGDISKRIALLKLQK 67
            I + +    L++   + + +     KS  +S+ +  T+NGE IT   +   +  +   +
Sbjct: 1   MIAMFSKKLTLLVTLFLCLPACDRADKSTEVSASVVATVNGEAITREQVDYMLERMLGAQ 60

Query: 68  I----NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
                  EL    +  LI       +++ S    DS  V                     
Sbjct: 61  PLVPITRELRGKVLDSLIASKAMTLQVKSSMSEEDSQRVQRAVQA--------------- 105

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                            +    + +      +   +EM                     +
Sbjct: 106 --------------YEEELYVKEYLARYATPEPVTVEMVSAYYDAHPNEFGGGVLKHFQL 151

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
           L        + +      ++  + S     +      +   +  +             L 
Sbjct: 152 LLLRDSGDDKKRDAFLSAVESLKASTDWKARAGEWSRQLPIEYQE------GKYAPGLLD 205

Query: 244 PQFQNLLKKSQNN-TTNPYVTQKGVEYIAICDKRDLGGEIALK--AYLSAQNTPTKIEKH 300
            +   ++ +     T++     K +  + + D      +   +  A +  +    ++   
Sbjct: 206 ERLGKVIDQLGKQATSDLIYVDKAIYLVRVSDVVQTAPKPIAEVSADIRKKLAAQQLRAA 265

Query: 301 EAEYVKKLRSNAIIH 315
             +    +     + 
Sbjct: 266 VKKATDDVVKTMDVK 280


>gi|157864608|ref|XP_001681014.1| PPIase; peptidyl-prolyl cis-trans isomerase/rotamase [Leishmania
           major strain Friedlin]
 gi|68124307|emb|CAJ07069.1| putative PPIase [Leishmania major strain Friedlin]
          Length = 115

 Score = 54.3 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 19/77 (24%), Gaps = 1/77 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             V +  K  +              + +        G        ++   F++  K    
Sbjct: 36  EAVTELQKWCQSINDGKVTFEEAARQRSDCSSYARGGDLGVFGPGEMMKPFEDATKSLEV 95

Query: 255 NNTTNPYVTQKGVEYIA 271
              +   VT  GV  I 
Sbjct: 96  GQVSGIVVTDSGVHIIK 112


>gi|163742798|ref|ZP_02150183.1| hypothetical protein RG210_15675 [Phaeobacter gallaeciensis 2.10]
 gi|161384053|gb|EDQ08437.1| hypothetical protein RG210_15675 [Phaeobacter gallaeciensis 2.10]
          Length = 613

 Score = 54.3 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/385 (8%), Positives = 87/385 (22%), Gaps = 85/385 (22%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK- 64
              LS+    +    ++I       V++     S      +  + ++  D ++ +   + 
Sbjct: 5   MKKLSNTFVWILMGMLIIGLAGFGAVNFTGSVSS---VAVVGDQEVSVDDYARELQREQR 61

Query: 65  ------------LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
                        Q     L+++ +  LI      QE    G++     +     +    
Sbjct: 62  ALEAQTGQRVPIAQMTALGLDRVVLGRLIAIAALDQESSDLGLSIGDQNLFDEISRIPAF 121

Query: 113 T---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML--------------- 154
               G    D   +            +    +     +V+   M                
Sbjct: 122 QDGTGAFNRDTYQYALDNIGLTEAAFEADLRRESARTLVQGAIMAGTEMPDTLRDTLTSY 181

Query: 155 --------------------KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                               +    E E+ A      +             ++  + L +
Sbjct: 182 VGARRSFDWLTVSEDSIALTEVEPSEDELRAFYDANIDQFTLPRTKVITYAALRPDALVD 241

Query: 195 QGFVQKRIKDA-------------EESRLRLPKDCNKLEKFASKIHDVSIG--------- 232
           +  +     +                   RL          A    D++           
Sbjct: 242 EIEIDAAALEQLFNDRSAEYQVPERRLVERLVFANRDAADSAKAQLDINGTTFDALVADR 301

Query: 233 -------KAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IA 283
                      +   DL    Q++      +   P  +  G     I  + +        
Sbjct: 302 GLSLQDVDLGDVTMGDLASAGQDVFAAQVGDVVGPLDSDLGPALFRINGRLEARVTSLED 361

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKKL 308
           +K  L A+    +  +      +++
Sbjct: 362 VKDELRAELATDRARRLIETRSEEI 386


>gi|39997188|ref|NP_953139.1| hypothetical protein GSU2090 [Geobacter sulfurreducens PCA]
 gi|39984078|gb|AAR35466.1| hypothetical protein GSU2090 [Geobacter sulfurreducens PCA]
 gi|298506201|gb|ADI84924.1| conserved hypothetical protein [Geobacter sulfurreducens KN400]
          Length = 527

 Score = 54.3 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 80/281 (28%), Gaps = 12/281 (4%)

Query: 45  TINGEVITDGDISK-------RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
            + G  +++ DI         R           E+++   ++       +   E +    
Sbjct: 243 KVGGLEVSEADIQAWYQKNIDRYQGPAGILPLAEVKEKVREDARRFKAGQHAYELAAAAI 302

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
           + N         AR  G   E+ + F  +Q       +  L  ++    + + +      
Sbjct: 303 NKNKATGDIGAVARALGAKTEETALFTAQQPAPALAGETELIRRAFI--LKEGELGGPVE 360

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             +       ++ K   V                 +     +K+ ++A+    +      
Sbjct: 361 TKKGIYLIKIKERKPAEVPPLAQIRAQVEEKAKTAKAVDLAKKKAEEAQAKLAKGDSTGL 420

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
            L   +      + G    +  S    +    L  +      P           + ++ +
Sbjct: 421 TLRD-SGPFAFDAKGNIPTVGASPELMEAAFKLTTAAPAPKEPIRVGARWIAFRLKERTE 479

Query: 278 --LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                  A K  +  +  P K +    +++++LRS A I  
Sbjct: 480 LNAANFAAQKEKIKQEILPRKQDDEYRKWIEELRSKAKIEI 520


>gi|71023841|ref|XP_762150.1| hypothetical protein UM06003.1 [Ustilago maydis 521]
 gi|46101742|gb|EAK86975.1| hypothetical protein UM06003.1 [Ustilago maydis 521]
          Length = 174

 Score = 54.3 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/81 (11%), Positives = 22/81 (27%), Gaps = 1/81 (1%)

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
            Q+     K+ +   +      K  +     +      + G   +     +   F++   
Sbjct: 91  KQDAIEQLKKFEQELQQDSSKDKFASLASVHSDCSSARAGGDLGFFQRGQMQKPFEDAAF 150

Query: 252 K-SQNNTTNPYVTQKGVEYIA 271
                  ++   T  GV  I 
Sbjct: 151 GLKPGELSSIVDTDSGVHLIY 171


>gi|281338941|gb|EFB14525.1| hypothetical protein PANDA_015066 [Ailuropoda melanoleuca]
          Length = 95

 Score = 54.3 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK-------KS 253
           +I +A E      +      +++        G   ++    +   FQ             
Sbjct: 14  KIMEAMEKLKSGMRFSEVATQYSED-KARQGGDLGWMTRGSMVGPFQEAAFALPVSGLDK 72

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
              T  P  T+ G   I +  K+
Sbjct: 73  PVFTDPPVKTKFGYHIIMVEGKK 95


>gi|212636856|ref|YP_002313381.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           piezotolerans WP3]
 gi|212558340|gb|ACJ30794.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
           piezotolerans WP3]
          Length = 92

 Score = 54.3 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 4/77 (5%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           ++  +D  +   +  K     +K +S       G      +  + P F  +         
Sbjct: 15  KELAEDIIKQLNKGAKFDVLAKKHSSCPSGKKGGHLGEFKKGAMVPAFDKV--CFTGELL 72

Query: 259 NP--YVTQKGVEYIAIC 273
            P    T+ G   I + 
Sbjct: 73  TPHLVKTKFGWHVIKVL 89


>gi|149184601|ref|ZP_01862919.1| peptidyl-prolyl isomerase [Erythrobacter sp. SD-21]
 gi|148831921|gb|EDL50354.1| peptidyl-prolyl isomerase [Erythrobacter sp. SD-21]
          Length = 645

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/252 (10%), Positives = 67/252 (26%), Gaps = 23/252 (9%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSR----------IRTTINGEVITDG 54
           + T   +F K      + + F  +   ++ S  +S+               + G  I+  
Sbjct: 1   MLTFFRNFFKTKIGLAIALAFLGLIGFAFASMDVSNTGAFGGVAGGDSVAVVGGSKISTA 60

Query: 55  DISKRIALLKLQKINGELE------------KIAVQELIVETLKKQEIEKSGITFDSNTV 102
           ++++ +     +      +               ++ LI         E++G    +N V
Sbjct: 61  ELNEAMDNALRRAREENPDVTMQTLIAEGEMDRVLEGLIDRYALMAWAEENGFRAGANLV 120

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
           N    Q     G S    ++  +     ++     L  Q       +          ++ 
Sbjct: 121 NSEIRQIPAARGPSGNFETAAYEAFLRNNSITDSQLRQQLRTTVYFQQAVFPALYGTQL- 179

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
             +  +                        Q      +  +   E+R R  +   +  ++
Sbjct: 180 PESIARTYARSFKERRSGGIATIPAALFAPQGDPTDAQLSEFYAENRSRFVRPERRTLRY 239

Query: 223 ASKIHDVSIGKA 234
           A+       G  
Sbjct: 240 ATFDSSALGGSI 251



 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/261 (9%), Positives = 58/261 (22%), Gaps = 20/261 (7%)

Query: 48  GEVITDGDISKRIAL--LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
              ITD  + +++       Q +   L    + E I  T  +   E+             
Sbjct: 148 NNSITDSQLRQQLRTTVYFQQAVFPALYGTQLPESIARTYARSFKERRSGGI-------A 200

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
            +  A          +   +      + F +       +     +         + +I A
Sbjct: 201 TIPAALFAPQGDPTDAQLSEFYAENRSRFVRPERRTLRYATFDSSALGGSINPSDEDIAA 260

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
             Q                  +P  +       + R                       +
Sbjct: 261 YYQDNAEEYAARETRNLTQLIVPTREGAEALAARVR---------GGESFAQAASSSGLR 311

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAIC--DKRDLGGEIA 283
              +   +   +  +            S+   T P  +  G     +   D +       
Sbjct: 312 TTQLDGRERSDIRSAASQAVADAYFSASEGAVTAPARSSLGWHIARVNSVDPQPARSLAE 371

Query: 284 LKAYLSAQNTPTKIEKHEAEY 304
           ++  +       K ++  AE 
Sbjct: 372 VRDSIVEVLREQKRQRGIAEL 392


>gi|255021292|ref|ZP_05293340.1| Peptidyl-prolyl cis-trans isomerase ppiD [Acidithiobacillus caldus
           ATCC 51756]
 gi|254969155|gb|EET26669.1| Peptidyl-prolyl cis-trans isomerase ppiD [Acidithiobacillus caldus
           ATCC 51756]
          Length = 516

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/237 (8%), Positives = 54/237 (22%), Gaps = 18/237 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYK-SWAMSSRIRTTINGEVITDGDISKR 59
           M          +   +    + + F +  +  Y  S     ++   ++G+ I+     +R
Sbjct: 1   MLDAFRKLSQSWAAKIVLAVIALSFVLWGVSGYLFSNDSGEQVVAKVDGDKISAAIFQQR 60

Query: 60  I-------------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF 106
           +                     +       +  LI   L   E  K G+    + +    
Sbjct: 61  LHDAREHYAQVFGPEAAAQMAKDPSFAPDVLNGLIDNLLLAHEARKLGLQVPDSALAQKI 120

Query: 107 V---QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK-NDFMLKYGNLEME 162
                 A     S   +   L   G+    F+  L    +   +      +      + E
Sbjct: 121 EGISAFADKGKFSRAKYQEVLRANGLTPVKFEAMLRDSMLLEQLQAVPQILAVASRKDAE 180

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
              +  +         +                    ++ +       ++       
Sbjct: 181 SAWSWSQEYRDARVVQIPVRSFLKAATPTDAEVQSYYQQHQSDYALPAQVEVQYVTF 237


>gi|89093533|ref|ZP_01166481.1| peptidyl-prolyl cis-trans isomerase C [Oceanospirillum sp. MED92]
 gi|89082223|gb|EAR61447.1| peptidyl-prolyl cis-trans isomerase C [Oceanospirillum sp. MED92]
          Length = 93

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 8/72 (11%), Positives = 22/72 (30%), Gaps = 1/72 (1%)

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQ 264
           ++            +K++        G         +   F++++ K   +    P  T+
Sbjct: 22  KKRLKLGNDFGKLAKKYSLCPSGKRHGDLGEFRRGQMVKPFEDVVFKKPLHEVHGPVKTR 81

Query: 265 KGVEYIAICDKR 276
            G   I    ++
Sbjct: 82  FGWHLIETIYRK 93


>gi|88801328|ref|ZP_01116856.1| peptidylprolyl cis-trans isomerase [Polaribacter irgensii 23-P]
 gi|88781986|gb|EAR13163.1| peptidylprolyl cis-trans isomerase [Polaribacter irgensii 23-P]
          Length = 707

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 27/112 (24%)

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
           ++ + Q             R             +        G   +   + + P F++ 
Sbjct: 367 SRTKAQAEELADSILRVVKRSDSKFASLAKSLSSDTGSAAKGGDLDWFNYARMTPAFRDY 426

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE 301
              +         T  G   I I D ++    + L  Y S        E   
Sbjct: 427 AFTNSKGAVGVVETPFGYHVIRIDDTKNTQKVLKLSTYASKIIPSEATENDF 478



 Score = 40.4 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/125 (10%), Positives = 37/125 (29%), Gaps = 1/125 (0%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           + SK+       I ++       +     +  + S +  +     +NGE I+  + ++ +
Sbjct: 3   ILSKIRERSMFLIIIIGLALFAFVLDPSTLGDFFSSSKVNE-VGQVNGEAISRQEFAEAV 61

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
              K    +   E  A   +    L+K+  +        +                 ++ 
Sbjct: 62  DQYKQNSRSEVSEMQAANAVWDNILRKKIYKNQLEDAGISVGEQDVWSEILKVPSVQDNP 121

Query: 121 SSFLD 125
               +
Sbjct: 122 QFQNE 126


>gi|254517142|ref|ZP_05129200.1| probable peptidyl-prolyl cis-trans isomerase transmembrane protein
           [gamma proteobacterium NOR5-3]
 gi|219674647|gb|EED31015.1| probable peptidyl-prolyl cis-trans isomerase transmembrane protein
           [gamma proteobacterium NOR5-3]
          Length = 296

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/301 (10%), Positives = 83/301 (27%), Gaps = 32/301 (10%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQE 79
            + ++FC +   +  +   S  I        IT+ ++   + L+        + K+A  +
Sbjct: 2   ILAMMFCTIAQPTLGADPSSDVIVIKDGELEITEQEMQYALKLV-----PESVRKLAQDD 56

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
                                               +     +    +       +    
Sbjct: 57  ------------------PGTRYELLTEIVLPRKKAALASAFNPSQDEYWELRFAEIAAR 98

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
            + I   ++    +  +  L +E    + +   +   E     +LF  P    +     +
Sbjct: 99  QKIISTKLLAEYPVPDFKALALERYTLQPEKYGLVPEERKGSHILFRSPPGLDREP-LRE 157

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQ-YLLESD--LHPQFQNLLK--KS 253
           K      E R         +E ++         G    ++   D  + P F   L     
Sbjct: 158 KATNVLAELRSGAVTFTEAVELYSEDPGTAKKGGLLDRWITYGDPSISPPFSEALFAVDQ 217

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
               +    TQ G+  I +   +    +      + ++     ++++     +++ S  +
Sbjct: 218 PGLYSEVTDTQFGLHIIRLEAIKPSRIQE--FDEVKSKVLTEIVKEYRTLAQQEINSRFL 275

Query: 314 I 314
           I
Sbjct: 276 I 276


>gi|162455703|ref|YP_001618070.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sorangium cellulosum
           'So ce 56']
 gi|161166285|emb|CAN97590.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sorangium cellulosum
           'So ce 56']
          Length = 175

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/129 (6%), Positives = 29/129 (22%), Gaps = 9/129 (6%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG-------FVQKRIKD 204
                   E +    +++    +  + +    L  + +                + R ++
Sbjct: 44  VSAPIRAAEEDAAIERERAVIASQPKQIGARHLLVMHEGSKSKPEGLRRTRAEARARAQE 103

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVS-IGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYV 262
           A             + +++ +       G         +   F +          +    
Sbjct: 104 ALLKIRGGASFEEAVAEYSDEPGAAERGGDLGVFERGMMVKGFSDAAFALKIGEVSEIIE 163

Query: 263 TQKGVEYIA 271
           T  G   I 
Sbjct: 164 TPFGFHIIQ 172


>gi|119774802|ref|YP_927542.1| cell wall hydrolase/autolysin [Shewanella amazonensis SB2B]
 gi|119767302|gb|ABL99872.1| cell wall hydrolase/autolysin [Shewanella amazonensis SB2B]
          Length = 92

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 7/76 (9%), Positives = 21/76 (27%), Gaps = 1/76 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN- 255
             ++  +  +    +        ++++        G         +   F +++ K    
Sbjct: 12  KTREEAEKLKARIDKGEDFGKLAKQYSLCPSKRRSGDLGEFGPGQMVKAFDDVVFKKPIL 71

Query: 256 NTTNPYVTQKGVEYIA 271
               P  T+ G   I 
Sbjct: 72  EVHGPVKTRFGFHLIQ 87


>gi|145589120|ref|YP_001155717.1| hypothetical protein Pnuc_0937 [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047526|gb|ABP34153.1| hypothetical protein Pnuc_0937 [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 487

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/256 (10%), Positives = 72/256 (28%), Gaps = 27/256 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   V       ++++   F++  F +  I SY  +         +NG+ IT  ++    
Sbjct: 1   MFDTVR-KHQKLLQIVLMLFIVPSFVMFGISSYSGFLDKETDLVKVNGKPITAQEVDSAA 59

Query: 61  ALLKLQ-------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
                +         + +  +  + EL+ + +    +    +      +        +  
Sbjct: 60  KRQAERVGGNIQIAQSLQFRQAILNELLQQRILGFAVINLRLQVGKEALIKSLQNIPQIR 119

Query: 114 GLSAED-------FSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------NDFML 154
            L  +D       F   L   G+ +  F    A        V             ++ + 
Sbjct: 120 ALYRQDGSFDDVRFKQLLASNGLNEEQFYASQAFDLKISQFVNSVARTELPTPKLSEIVS 179

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
                E ++ +     K    +    +  L +  +   +     +    +    +    +
Sbjct: 180 TLYETERQVQSLSFDAKEYINKVNPTQEELQAFYNANTKLFESPEYIDVEYIVLKADPKE 239

Query: 215 DCNKLEKFASKIHDVS 230
           D       A +  +++
Sbjct: 240 DAKGFSAKADQFANMT 255


>gi|194466674|ref|ZP_03072661.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lactobacillus
           reuteri 100-23]
 gi|194453710|gb|EDX42607.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lactobacillus
           reuteri 100-23]
          Length = 311

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/284 (11%), Positives = 77/284 (27%), Gaps = 33/284 (11%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELI 81
           LI       +     A  ++   T NG  IT+ +    +             K  +Q++I
Sbjct: 6   LIAIIAGAALMMPLAACGNKAVATTNGGKITESEYYSSMKQTSA-------GKQVLQQMI 58

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
           ++ + +++  K                         +  + +   +    + F  YL  Q
Sbjct: 59  LDKVLEKQYGKEV--------------------SDKQVNAQYNTYKSEYGSDFNAYLQSQ 98

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
           ++    +K                          +++             + ++   +  
Sbjct: 99  NLTEKSLKQQIRSNLLLTAA-ARHYSHITTKQINKQWTKYQPKVQTATILVGSKSDAEDI 157

Query: 202 IKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYL--LESDLHPQFQNLLKKSQNN-- 256
           I    +S  +        +  +       + GK       ++ L   ++    K +    
Sbjct: 158 INQLNDSSNKYKTFKKLAKSKSTDSQTKNNGGKLPAFDNTDNQLDSAYKKAAFKLKTGEY 217

Query: 257 TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH 300
           TT P  T  G + I + +    G +      L  Q     +   
Sbjct: 218 TTTPVKTDDGYQVIYMIEHPAKGKKSQHINDLKNQIVQENMNNQ 261


>gi|119592218|gb|EAW71812.1| protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4
           (parvulin) [Homo sapiens]
          Length = 80

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 10/81 (12%), Positives = 22/81 (27%), Gaps = 8/81 (9%)

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------LLKKSQN 255
            +A E      +      +++        G   ++    +   FQ               
Sbjct: 1   MEAMEKLKSGMRFNEVAAQYSED-KARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPV 59

Query: 256 NTTNPYVTQKGVEYIAICDKR 276
            T  P  T+ G   I +  ++
Sbjct: 60  FTDPPVKTKFGYHIIMVEGRK 80


>gi|322488477|emb|CBZ23723.1| peptidyl-prolyl cis-trans isomerase/rotamase,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 115

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/77 (11%), Positives = 19/77 (24%), Gaps = 1/77 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             V +  K  +              + +        G        ++   F++  K    
Sbjct: 36  EAVTELQKWHQSIEEGKMTFEEAARQRSDCSSYARGGDLGVFGPGEMMKSFEDATKSLEV 95

Query: 255 NNTTNPYVTQKGVEYIA 271
              +   VT  G+  I 
Sbjct: 96  GQVSGIVVTDSGIHIIK 112


>gi|319779411|ref|YP_004130324.1| hypothetical protein TEQUI_1261 [Taylorella equigenitalis MCE9]
 gi|317109435|gb|ADU92181.1| hypothetical protein TEQUI_1261 [Taylorella equigenitalis MCE9]
          Length = 644

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/387 (10%), Positives = 91/387 (23%), Gaps = 86/387 (22%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK----RIA 61
           F   S ++  +    ++  F       Y   ++S +    +N E IT+   +K    R+ 
Sbjct: 5   FRKHSKWVLFIIIILIVPSFVFFGTSKYSGMSISEKPLVKVNKEKITERQFNKSWTERLN 64

Query: 62  LLKLQKING---------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
            L+ Q  N              + + +++ + L  Q   K+      + V        + 
Sbjct: 65  SLRDQLGNNFKVSEIDTPANRNLWLNKIVDDILITQTANKNKFFGSDSMVRSAIALDPKF 124

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQY----------------------------------- 137
                    ++       +   ++Y                                   
Sbjct: 125 AVDGKFSMENYNAFLTSANITSQEYENYLRANTGINLVVEPLINSTLVPLTTLEELKKHV 184

Query: 138 -LAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS---------- 186
               +         DF+      E E+    +K      R      V +           
Sbjct: 185 TKTREVQTKIFANEDFINAVSVDEKELEDWYKKNSEEKYRVPEYVNVEYFLLNQKAAVDL 244

Query: 187 -----------IPDNKLQNQGFVQKRIKDAEE---------SRLRLPKDCNKLEKFASKI 226
                        +N        ++R     +             L    NK E+F    
Sbjct: 245 VPQPNEDALKSYYENNKNRFSTEERRFVRHIQLDSEERAKAIYEELKTTPNKFEEFVLSD 304

Query: 227 H-----DVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
                   + G+  +L +SD+      +    +   T P           +        +
Sbjct: 305 SLDAGTKNNKGELGFLKKSDIPGIENTVFALDKPGITGPVKLGNSFHIFDVVQIEKAKVK 364

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKKL 308
                 L          +  ++   +L
Sbjct: 365 S--FEELKDTLVNEVKLQIASDKFAEL 389


>gi|227889497|ref|ZP_04007302.1| peptidylprolyl isomerase [Lactobacillus johnsonii ATCC 33200]
 gi|227849975|gb|EEJ60061.1| peptidylprolyl isomerase [Lactobacillus johnsonii ATCC 33200]
          Length = 298

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/301 (10%), Positives = 74/301 (24%), Gaps = 39/301 (12%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
              +     I    +     +   T  G  IT+     ++          +  +  +  +
Sbjct: 8   AATVLAFAGIALSATACSGGKAVVTYKGGKITESQYYDKMK-------ESQAGQSTLASM 60

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           IV    + +  K       +          +        F S L++ G+  + FK  L  
Sbjct: 61  IVSDALESQYGKDVTQKQVDKEYN------KYKKQYGSQFDSVLEQNGMTASTFKDNLKT 114

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
             +    +    + K    + +      + +       + +                 + 
Sbjct: 115 NLLTEAAL--KHIKKITPAQEKKAWKSYQPEITVQHILVSK-----------------KS 155

Query: 201 RIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESD---LHPQFQNLLKKSQNN 256
             +D  +            +K+++        GK      +D            K     
Sbjct: 156 TAEDVIKQLQDGGDFKKLAKKYSTDTATKNDAGKLPAFDSTDSTLDSSFKTAAFKLKTGE 215

Query: 257 TTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH--EAEYVKKLRSNAI 313
            T  P  TQ G   I +      G     K  +  Q   +  E        +  +   A 
Sbjct: 216 ITTTPVKTQYGYHVIKMIKHPAKGTFKEHKKQIDNQIYQSMSEDQNVMRSVIATVLKRAD 275

Query: 314 I 314
           +
Sbjct: 276 V 276


>gi|196015559|ref|XP_002117636.1| hypothetical protein TRIADDRAFT_51090 [Trichoplax adhaerens]
 gi|190579805|gb|EDV19894.1| hypothetical protein TRIADDRAFT_51090 [Trichoplax adhaerens]
          Length = 130

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/87 (12%), Positives = 24/87 (27%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               ++ +A               +++        G   ++    +   FQ      + +
Sbjct: 45  EKHSKVMEAMAKLKEGIAFNQVATQYSED-KARQGGDLGWMTRGSMVGPFQEAAFNLEPS 103

Query: 257 TT-------NPYVTQKGVEYIAICDKR 276
           T         P  T+ G   I I  K+
Sbjct: 104 TVASPSYTDPPVKTKFGYHIIMIEGKK 130


>gi|71065417|ref|YP_264144.1| peptidylprolyl isomerase [Psychrobacter arcticus 273-4]
 gi|71038402|gb|AAZ18710.1| peptidylprolyl isomerase [Psychrobacter arcticus 273-4]
          Length = 92

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 7/77 (9%), Positives = 20/77 (25%), Gaps = 4/77 (5%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           ++   D      +  +     +K ++       G      +  +   F  +         
Sbjct: 15  KELADDIIAKLKKGAQFDVLAKKHSTCPSGKKGGSLGEFKQGQMVQPFDKV--CFSGELF 72

Query: 259 NP--YVTQKGVEYIAIC 273
            P    T+ G   + + 
Sbjct: 73  TPHLVKTKFGWHVVKVL 89


>gi|254469828|ref|ZP_05083233.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudovibrio sp.
           JE062]
 gi|211961663|gb|EEA96858.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudovibrio sp.
           JE062]
          Length = 628

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/193 (10%), Positives = 53/193 (27%), Gaps = 16/193 (8%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDIS--- 57
           M   +  S+  +   +    +++ F +  I       + S    ++  + I+  D     
Sbjct: 1   MLDALRNSVGSWFAKILIGLLVLSFAVWGIADVF-TGIGSTSVASVGDKEISAQDFQRAY 59

Query: 58  -KRIALLKLQKINGELEK---------IAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
            + +  L  +      ++           +  L+ E     E  K  I      +     
Sbjct: 60  SRELDQLSRRVGQPVTQEQAAAFGVPAQVLGRLVAEAALDNEASKLRIGVSDEAIIKTIQ 119

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI--WPDVVKNDFMLKYGNLEMEIPA 165
           +     G++  D +              +++  Q +      +    +      E  + A
Sbjct: 120 ETPAFQGVNGYDRNRLGQVLYNLGMSEDEFVMQQQLVAERQQLAEAVIGGIVVPETMLEA 179

Query: 166 NKQKMKNITVREY 178
             +        EY
Sbjct: 180 FDKYAMEERTVEY 192


>gi|212690534|ref|ZP_03298662.1| hypothetical protein BACDOR_00016 [Bacteroides dorei DSM 17855]
 gi|237708010|ref|ZP_04538491.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 9_1_42FAA]
 gi|212666883|gb|EEB27455.1| hypothetical protein BACDOR_00016 [Bacteroides dorei DSM 17855]
 gi|229457996|gb|EEO63717.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 9_1_42FAA]
          Length = 446

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/199 (9%), Positives = 52/199 (26%), Gaps = 7/199 (3%)

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPD-VVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
           ++   +                Q  W    +   +++     E  +     + +      
Sbjct: 61  NYKLKVHYAHDTGIDTLSAFRRQMAWYRGKLLKKYLVDAEKEEQTVRQLYLRSEQRLQTN 120

Query: 178 YLIRTVLFSIPDNKL---QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGK 233
             IR    S    +    Q++  V +++     +            +++         G 
Sbjct: 121 DWIRIAHISKYLPQNVGRQDELRVLQQMDSVYAALQGGADFSALACRYSDDTTCKNMGGL 180

Query: 234 AQYLLES-DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN 292
             ++  + ++      L    +N  + P+ +  G+  I   D++        +  L    
Sbjct: 181 LPWMPVNKNMQEWIDKLASLEKNKISAPFYSPMGIHIIKWIDRKPGISFEEKREQLLNYL 240

Query: 293 TPTKIEKHEAEYVKKLRSN 311
                 +   E     R  
Sbjct: 241 -EKNGNRTWQELSAGQRER 258


>gi|109892824|sp|P0C1J8|PIN1_RHIOR RecName: Full=Peptidyl-prolyl cis-trans isomerase pin1;
           Short=PPIase pin1; AltName: Full=Parvulin pin1
          Length = 150

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/97 (9%), Positives = 19/97 (19%), Gaps = 1/97 (1%)

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKA 234
                 R   +         +  ++       +              ++        G  
Sbjct: 50  KSRESRRPSSWREEHITRSKEEALKILTDFQHKIESGQETLSALATNYSDCTSAKRGGDL 109

Query: 235 QYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            Y     +   F+           + P  T  GV  I
Sbjct: 110 GYFERGQMQKPFEEATFALQVGELSKPVWTDSGVHLI 146


>gi|148268312|ref|YP_001247255.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Staphylococcus
           aureus subsp. aureus JH9]
 gi|147741381|gb|ABQ49679.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Staphylococcus
           aureus subsp. aureus JH9]
          Length = 271

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/292 (11%), Positives = 81/292 (27%), Gaps = 24/292 (8%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K++    V +    + + +  + A  S+        +I+       +A    +    ++
Sbjct: 1   MKMINKLIVPVTASALLLGACGASATDSK-----ENTLISSKAGDVTVADTMKKIGKDQI 55

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
              +  E++ + L     +K     +   ++    +  +  G   +   +   +      
Sbjct: 56  ANASFTEMLNKIL----ADKYKNKVNDKKIDEQIEKMQKQYGGKDKFEKALQQQ-----G 106

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                           K     K    + EI        +      LI+          L
Sbjct: 107 LTADKYKQNLRTAAYHKELLSDKIKISDSEIK-----EDSKKASHILIKVKSKKSDKEGL 161

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNL-L 250
            ++   QK  +  +E      K     +K +         G+  Y+L+      F+    
Sbjct: 162 DDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDKDFEKALF 221

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEA 302
           K      +    +  G   I            + K  L  +    K++K + 
Sbjct: 222 KLKDGEVSEVVKSSFGYHIIKAD---KPTDFNSEKQSLKEKLVDQKVQKIQN 270


>gi|237725282|ref|ZP_04555763.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D4]
 gi|229436548|gb|EEO46625.1| peptidyl-prolyl cis-trans isomerase [Bacteroides dorei 5_1_36/D4]
          Length = 446

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/199 (9%), Positives = 52/199 (26%), Gaps = 7/199 (3%)

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPD-VVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
           ++   +                Q  W    +   +++     E  +     + +      
Sbjct: 61  NYKLKVHYAHDTGIDTLSAFRRQMAWYRGKLLKKYLVDAEKEEQTVRQLYLRSEQRLQTN 120

Query: 178 YLIRTVLFSIPDNKL---QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGK 233
             IR    S    +    Q++  V +++     +            +++         G 
Sbjct: 121 DWIRIAHISKYLPQNVGRQDELRVLQQMDSVYAALQGGADFSALACRYSDDTTCKNMGGL 180

Query: 234 AQYLLES-DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN 292
             ++  + ++      L    +N  + P+ +  G+  I   D++        +  L    
Sbjct: 181 LPWMPVNKNMQEWIDKLASLEKNKISAPFYSPMGIHIIKWIDRKPGISFEEKREQLLNYL 240

Query: 293 TPTKIEKHEAEYVKKLRSN 311
                 +   E     R  
Sbjct: 241 -EKNGNRTWQELSAGQRER 258


>gi|222151803|ref|YP_002560961.1| peptidyl-prolyl cis/trans-isomerase PrsA homolog [Macrococcus
           caseolyticus JCSC5402]
 gi|222120930|dbj|BAH18265.1| peptidyl-prolyl cis/trans-isomerase PrsA homolog [Macrococcus
           caseolyticus JCSC5402]
          Length = 303

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 94/303 (31%), Gaps = 27/303 (8%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +++  K++    + +    +              +       +   DI K +        
Sbjct: 1   MTNLKKIMMPAALSVSILGLAACGNGGGETLVSSKA----GDVKQSDIMKEL-------G 49

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
           N ++ K + Q +  + LK++  +K      +   +              ++ +     Q 
Sbjct: 50  NEQIAKTSFQLIFNDVLKEKYGKKIDEDKINKETDKEI-------KKYGDEKTFEQILQQ 102

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                  +    + +  +  K          + +I  N +K  +I +             
Sbjct: 103 QSSGMTVEQYKKKRVTDEYQKQFLNDTIKISDKDIKDNAKKASHILIAVKSDSNKDGLSD 162

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
                    + K++K  ++   ++ K     ++        + G+  Y+++      F+ 
Sbjct: 163 KEAKAKAEEILKQVKANKDDFKKIAK-----KESDDTQSAKNNGELGYVVKGQTVEAFEK 217

Query: 249 L-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
              K      +N   T+ G   I   D +D+  E   K  L+      K++ +   YV+ 
Sbjct: 218 ALFKLKPGEISNIVKTEFGYHIIMAEDDKDIAKE---KDKLAQTIRQNKLQDNPKLYVQA 274

Query: 308 LRS 310
           ++ 
Sbjct: 275 VQK 277


>gi|46125831|ref|XP_387469.1| hypothetical protein FG07293.1 [Gibberella zeae PH-1]
          Length = 470

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 6/85 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               + ++A        K      +++        G   +  +  L P+F+ +    + +
Sbjct: 387 EKHAKKEEALAKLNDGVKFDEVAREYSED-KARQGGSLGWKTKGSLDPKFEEVAFALETS 445

Query: 257 TT-NP----YVTQKGVEYIAICDKR 276
           TT +P      T  G   I +  ++
Sbjct: 446 TTNSPKFVEVKTGFGYHIIMVEGRK 470


>gi|22218833|pdb|1J6Y|A Chain A, Solution Structure Of Pin1at From Arabidopsis Thaliana
          Length = 139

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 8/77 (10%), Positives = 18/77 (23%), Gaps = 1/77 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             V++     E+             + +        G         +   F+        
Sbjct: 60  AAVEQLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKV 119

Query: 255 NNTTNPYVTQKGVEYIA 271
            + ++   T  GV  I 
Sbjct: 120 GDISDIVDTDSGVHIIK 136


>gi|296162711|ref|ZP_06845496.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           Ch1-1]
 gi|295887027|gb|EFG66860.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           Ch1-1]
          Length = 250

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 72/270 (26%), Gaps = 26/270 (9%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              I+ EV+   D+S+ I LLKL            + LI + ++ +    +         
Sbjct: 4   IVRIDDEVV---DVSEFIRLLKLTGQ--------FESLIEQIVRDKLTVHAAKKQGITVS 52

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                Q A           +    Q +   +         I   + +   + +    E  
Sbjct: 53  ADEIQQRADQFRRVRGLHRATDMNQYLDALNVSLDEFEAFITDGLYQEKMLDEI-GNEAA 111

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           I               +   VL S             K  +             +   + 
Sbjct: 112 IKDYFALNSPKFDAIEVSHIVLDSEG-----------KAKEMISYLHDDPDSFADMAREH 160

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQ-NLLKKSQNNTTNPYVTQKG--VEYIAICDKRDLG 279
           +      + G    +L   L P  +  +   +  +   P+ +      E  A+  K    
Sbjct: 161 SIADTREAGGVIGKVLRGSLKPDIEAKIFNAAVGDLLGPFPSADRSCFEIFAVTAKYPAT 220

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
            +  + A +      + +     E+V + R
Sbjct: 221 LDADVAAEVRRLLRESWLIARAQEHVIEAR 250


>gi|77918484|ref|YP_356299.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Pelobacter carbinolicus DSM 2380]
 gi|77544567|gb|ABA88129.1| PPIase domain protein [Pelobacter carbinolicus DSM 2380]
          Length = 291

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/281 (7%), Positives = 50/281 (17%), Gaps = 34/281 (12%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKS 93
                   +  T  G  +T  D+   +  LK         ++                  
Sbjct: 22  SEQKKGDNVLATFEGGSLTVEDVQAHLRKLKKNSRYRNNPELL----------------- 64

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
                      +   HA N  +                               +      
Sbjct: 65  --------TPEYAFDHAVNMEMVIAKGLKENLHLDPNIRAEIHGFMANLFLKVMQDRLVP 116

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                   E         +           +  I          +   +         + 
Sbjct: 117 QIDKARFTEEEVKAYFDAHPESYVTPALYDVRIIKAADKAELESLVAELGGGLTFEEAVR 176

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAI 272
                             G           P ++ +++K      + P         + +
Sbjct: 177 THSTDAA------TREKGGAVGRRPLKRFRPDWRGIVEKLEPGKVSEPTAIGDSWYLLKL 230

Query: 273 CDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             K +         KAY+      T+  +      +KL+  
Sbjct: 231 EGKTEPVSHVYEDKKAYVRNDLLYTRYREAWQGTYEKLKKE 271


>gi|255082788|ref|XP_002504380.1| peptidyl-prolyl cis-trans isomerase [Micromonas sp. RCC299]
 gi|226519648|gb|ACO65638.1| peptidyl-prolyl cis-trans isomerase [Micromonas sp. RCC299]
          Length = 196

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 34/118 (28%), Gaps = 9/118 (7%)

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQK 265
           E+    +          +        G   ++       +F+     +    T+   T  
Sbjct: 22  EQIAAGVATFAELAATHSKCPSGKQGGALGWISRGQTVGEFERAAFTTPVGGTSKATTSF 81

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY-VKKLRSN-----AIIHYY 317
           GV  I + D R     I     +S Q+    +E    E  +  +R       A I  +
Sbjct: 82  GVHLIEVLDARANAPTIV---DVSIQDLQEVLEGDLDEVNLIDVREQNEWDAARIEAF 136


>gi|198425666|ref|XP_002128194.1| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase
           NIMA-interacting 4 (Rotamase Pin4) (PPIase Pin4)
           (Parvulin 14) (hPar14) (Par14) (Peptidyl-prolyl
           cis/trans isomerase EPVH) [Ciona intestinalis]
          Length = 128

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK---- 252
               +  +A E      K     ++++      S G   +++   +   FQ         
Sbjct: 43  EKHSKCMEAMEKIKAGMKFNEVAQQYSED-KARSGGDLGWMIRGSMVGPFQEAAFALPVS 101

Query: 253 ---SQNNTTNPYVTQKGVEYIAICDKR 276
              S   T  P  T+ G   I +  K+
Sbjct: 102 SLASPKYTDPPVKTKFGYHIIMVEGKK 128


>gi|163736555|ref|ZP_02143974.1| putative peptidyl-prolyl cis-trans isomerse D [Phaeobacter
           gallaeciensis BS107]
 gi|161390425|gb|EDQ14775.1| putative peptidyl-prolyl cis-trans isomerse D [Phaeobacter
           gallaeciensis BS107]
          Length = 613

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/385 (8%), Positives = 85/385 (22%), Gaps = 85/385 (22%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK- 64
              LS+    +    ++I       V++     S      +  + ++  D ++ +   + 
Sbjct: 5   MKKLSNTFVWILMGMLIIGLAGFGAVNFTGSVSS---VAVVGDQEVSVDDYARELQREQR 61

Query: 65  ------------LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
                        Q     L+++ +  LI      QE    G++     +     +    
Sbjct: 62  ALEAQTGQRVPIAQMTALGLDRVVLGRLIAIAALDQESSDLGLSIGDQNLFDEISRIPAF 121

Query: 113 T---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML--------------- 154
               G    D   +            +    +     +V+   M                
Sbjct: 122 QDGTGAFNRDTYQYALDNIGLTEAAFEADLRRESARTLVQGAIMAGTEMPDTLRDTLTSY 181

Query: 155 --------------------KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                                    E E+        +             ++  + L +
Sbjct: 182 VGARRSFDWLTVSEESIALTAVEPSEDELRTFYDANIDQFTLPRTKVITYAALRPDALVD 241

Query: 195 QGFVQKRIKDA-------------EESRLRLPKDCNKLEKFASKIHDVSIG--------- 232
           +  +     +                   RL          A    D++           
Sbjct: 242 EIEIDAAALEQLFNDRSAEYQVPERRLVERLVFANRDAADSAKAQLDINGTTFDALVADR 301

Query: 233 -------KAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IA 283
                      +   DL    Q++      N   P  +  G     I  + +        
Sbjct: 302 GLSLQDVDLGDVTMGDLASAGQDVFAAQVGNVVGPLDSDLGPALFRINGRLEARVTSLED 361

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKKL 308
           +K  L A+    +  +      +++
Sbjct: 362 VKDELRAELATDRARRLIETRSEEI 386


>gi|289550444|ref|YP_003471348.1| Foldase protein PrsA precursor [Staphylococcus lugdunensis
           HKU09-01]
 gi|289179976|gb|ADC87221.1| Foldase protein PrsA precursor [Staphylococcus lugdunensis
           HKU09-01]
          Length = 322

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/252 (11%), Positives = 63/252 (25%), Gaps = 13/252 (5%)

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
            ++ K    E I  T     + K       + V+   +                 +    
Sbjct: 44  ADVMKKIGNEQIANTSFSIMLNKILEDKYKDKVDTKDIDDEIKQEQKKYGGKDQFESTLK 103

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                      Q       K     K    + ++        +      LI+        
Sbjct: 104 QQGMSLDDYKQQKKLAAYQKQLLADKIKVSDKDVK-----DNSKKASHILIKVKSKDSDK 158

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQN 248
             L ++   +K  +  ++      K     +K +         G   Y+++  +  +F+ 
Sbjct: 159 EGLSDKKAKEKAEEIQKQVEKDPSKFGEIAKKESMDSSSAKKDGSLGYVIKGQMVDEFEK 218

Query: 249 L-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE---KHEAEY 304
                 +   +    T  G   I            + KA +  +    K++   K   + 
Sbjct: 219 ALFDLKEGKVSKVIKTDYGYHIIKAD---KESDFNSEKANIKEKMIEQKVQKNPKLLTDA 275

Query: 305 VKKLRSNAIIHY 316
            K L     + Y
Sbjct: 276 YKDLLDQYKVDY 287


>gi|239637879|ref|ZP_04678840.1| foldase protein PrsA [Staphylococcus warneri L37603]
 gi|239596442|gb|EEQ78978.1| foldase protein PrsA [Staphylococcus warneri L37603]
          Length = 330

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/313 (12%), Positives = 86/313 (27%), Gaps = 31/313 (9%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +  F K++       +              ++ I +           +   +  +   +I
Sbjct: 1   MKAFNKIMIPVTASALLLGACGSDSTDSKENTLISSKAGDVK-----VEDVMKKIGKDQI 55

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             +   IA+ +++ +  K           D+  ++    +  +  G   +  S    +  
Sbjct: 56  ASKSFSIALDKILADKYK--------DKVDTKDIDKDIKKEEKQYGGKEQFESVLKQQ-- 105

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                       Q       K     K    + EI               LI+       
Sbjct: 106 ---GMSMDEYKDQKRLSAYQKELLNDKIKVSDKEIK-----DNTKKASHILIKVKSKDSD 157

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQF- 246
              L ++   QK  +  +E      K     +K +  K      G   Y+ +  +   F 
Sbjct: 158 KEGLSDKKAKQKAEEIQKEVSKDPSKFGEIAKKESMDKSTAKKDGSLGYVTKGQMMESFD 217

Query: 247 QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE---KHEAE 303
           + L K  +   T    T  G   I            + K+ L ++    KI+   K   +
Sbjct: 218 KALFKLKEGEVTKVVKTDYGYHIIKAD---KETDFNSEKSNLKSKILEQKIQKDPKLLTD 274

Query: 304 YVKKLRSNAIIHY 316
             K++     + Y
Sbjct: 275 AYKEILDEYKVDY 287


>gi|38637935|ref|NP_942909.1| peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16]
 gi|32527273|gb|AAP86023.1| probable peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
           H16]
          Length = 250

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/154 (10%), Positives = 44/154 (28%), Gaps = 5/154 (3%)

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
            + +  +           +LF +      +    +   +     R             ++
Sbjct: 84  YDSRPERFRDGEWVEADHILFQVTPRVPLD-ALREIAAQTLALVRGDPSTFAEHARALSN 142

Query: 225 KIHDVSIGKAQYLLESDLHPQFQNLLKK--SQNNTTNPYVTQKGVEYIAICDKRDLG--G 280
               V+ G+   +   +  P+F+  L              T+ G+  + I ++       
Sbjct: 143 CPSGVNGGRLGRVFRGETAPEFERALFGALQDGVLPQLVETRFGLHIVRILERYPGTRLP 202

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             A++  ++        ++   +Y   L   A I
Sbjct: 203 FDAVRGDIARALAAAARDRAWKQYASLLIGRARI 236


>gi|226944969|ref|YP_002800042.1| peptidyl-prolyl cis-trans isomerase [Azotobacter vinelandii DJ]
 gi|226719896|gb|ACO79067.1| peptidyl-prolyl cis-trans isomerase [Azotobacter vinelandii DJ]
          Length = 92

 Score = 53.9 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 5/77 (6%), Positives = 17/77 (22%), Gaps = 1/77 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-N 255
             +      ++             + +        G    +    L      ++ +    
Sbjct: 12  ASEAEAARLKQRLAGGEDFARLARRHSLCPSGKRGGDLGEIRPGQLVRPIDQVIFRKALR 71

Query: 256 NTTNPYVTQKGVEYIAI 272
               P  +Q G   + +
Sbjct: 72  EIHGPVKSQFGYHLVQV 88


>gi|152955221|emb|CAM59671.1| parvulin-type peptidyl-prolyl cis/trans isomerase [Lotus japonicus]
          Length = 122

 Score = 53.5 bits (126), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 8/76 (10%), Positives = 17/76 (22%), Gaps = 1/76 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQN 255
            V +     E+         +   + +        G         +   F+         
Sbjct: 44  AVAQLSTLREDILSGKANFEDVASRISDCSSAKRGGDLGPFGRGQMQKPFEEATFALKVG 103

Query: 256 NTTNPYVTQKGVEYIA 271
           + +    T  GV  I 
Sbjct: 104 DISEIVDTDSGVHIIK 119


>gi|24654671|ref|NP_728511.1| CG32845 [Drosophila melanogaster]
 gi|23092688|gb|AAN11433.1| CG32845 [Drosophila melanogaster]
          Length = 386

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/196 (6%), Positives = 41/196 (20%), Gaps = 1/196 (0%)

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
            G       S  +         K +  +          +          +     +    
Sbjct: 75  FGWEERIAHSTKECYFYDTITRKVHFTLPPSHHREKDRNAWGAILGDYSDFNDQLRCRHI 134

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
           +       R   +     +   Q  + K +   +  +    +        +        G
Sbjct: 135 LVKHSESDRCSSYRERMVRRTKQEALNKIMHARDLIQSGKFEFAELANMISDCCSARHGG 194

Query: 233 KAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ 291
               L  +     F+  +        +  + T+ G   +       +      +     +
Sbjct: 195 DLGPLSLTQTPFVFERNILLLKDGELSEIFQTKAGYHILLRTPINYINYSTKNRRRRLKK 254

Query: 292 NTPTKIEKHEAEYVKK 307
                 +     ++KK
Sbjct: 255 IFIANEKAKSKAHLKK 270


>gi|265754204|ref|ZP_06089393.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_33FAA]
 gi|263234913|gb|EEZ20468.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_33FAA]
          Length = 427

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/199 (9%), Positives = 52/199 (26%), Gaps = 7/199 (3%)

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPD-VVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
           ++   +                Q  W    +   +++     E  +     + +      
Sbjct: 42  NYKLKVHYAHDTGIDTLSAFRRQMAWYRGKLLKKYLVDAEKEEQTVRQLYLRSEQRLQTN 101

Query: 178 YLIRTVLFSIPDNKL---QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGK 233
             IR    S    +    Q++  V +++     +            +++         G 
Sbjct: 102 DWIRIAHISKYLPQNVGRQDELRVLQQMDSVYAALQGGADFSALACRYSDDTTCKNMGGL 161

Query: 234 AQYLLES-DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN 292
             ++  + ++      L    +N  + P+ +  G+  I   D++        +  L    
Sbjct: 162 LPWMPVNKNMQEWIDKLASLEKNKISAPFYSPMGIHIIKWIDRKPGISFEEKREQLLNYL 221

Query: 293 TPTKIEKHEAEYVKKLRSN 311
                 +   E     R  
Sbjct: 222 -EKNGNRTWQELSAGQRER 239


>gi|255711148|ref|XP_002551857.1| KLTH0B01540p [Lachancea thermotolerans]
 gi|238933235|emb|CAR21419.1| KLTH0B01540p [Lachancea thermotolerans]
          Length = 161

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/153 (7%), Positives = 44/153 (28%), Gaps = 7/153 (4%)

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK------NITVREYL 179
            +       K         P+  ++ +    G    ++              ++ ++   
Sbjct: 6   PEPWTVRFSKSKRREYFFHPETKQSQWEEPEGTDHQQLKQYLADHPLRVRCLHLLIKHKD 65

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
            R       ++   ++    + +   ++   +  +  +   + +        G   +   
Sbjct: 66  SRRPASHRSEHITLSKDEALQELAAYQQRLEQGERFEDLARERSDCSSFKRGGDLGFFAR 125

Query: 240 SDLHPQFQNLLKKSQNN-TTNPYVTQKGVEYIA 271
            ++ P F+++      +  + P  T  GV  I 
Sbjct: 126 GEMQPAFESVAFALPVSAVSAPVDTDSGVHLIK 158


>gi|145640429|ref|ZP_01796013.1| thymidylate kinase [Haemophilus influenzae R3021]
 gi|145275015|gb|EDK14877.1| thymidylate kinase [Haemophilus influenzae 22.4-21]
          Length = 137

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 58/141 (41%), Gaps = 8/141 (5%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAM-SSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           +        +   +  V++ S A    R+  T++G  + +  +       +         
Sbjct: 1   MKKFILKSFLLATLGCVAFTSMAQAEERVVATVDGIPVLESQV-------RANMGKKGDR 53

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           + A+ ++I + L ++ +++SG+  D   +++     A   GL+   F   LD QGI  N 
Sbjct: 54  QSAIDKIIDDILVQKAVQESGVKIDPREIDHIVEDTAARNGLTYGQFLDALDYQGISLNA 113

Query: 134 FKQYLAIQSIWPDVVKNDFML 154
           F+Q +A Q +    V   F  
Sbjct: 114 FRQQIANQMVMGLYVTKLFKK 134


>gi|260946952|ref|XP_002617773.1| hypothetical protein CLUG_01232 [Clavispora lusitaniae ATCC 42720]
 gi|238847645|gb|EEQ37109.1| hypothetical protein CLUG_01232 [Clavispora lusitaniae ATCC 42720]
          Length = 174

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/162 (10%), Positives = 44/162 (27%), Gaps = 2/162 (1%)

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
              +S      +   Q   ++ ++      +   +   + F        +      +   
Sbjct: 10  CIRVSKTHNKEYFLNQATQESSWEPPYGTDTAKLEAYLDKFRANGMKPVVAEDGKIRASH 69

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKIHDVS 230
            +       R   +  PD    ++      +K  ++  L    K  +  +  +      S
Sbjct: 70  LLIKNVTSRRPKSWKSPDPVTTSRDESIALLKGYQKRILNGEVKLADLAKTESDCSSHAS 129

Query: 231 IGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
            G   +     + P F+      +    ++   T  GV  I 
Sbjct: 130 GGDLGFFGRGQMQPAFEEAAFALNVGEFSDIVETDSGVHLIQ 171


>gi|195391926|ref|XP_002054610.1| GJ22713 [Drosophila virilis]
 gi|194152696|gb|EDW68130.1| GJ22713 [Drosophila virilis]
          Length = 130

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             Q +I +A E      K       ++        G   + +   +   FQ+       +
Sbjct: 45  EKQGKIMEALEKLKAGQKFPEVAAAYSED-KARQGGDLGWQIRGAMVGPFQDAAFALPIS 103

Query: 257 TT-------NPYVTQKGVEYIAICDKR 276
           T         P  T+ G   I +  K+
Sbjct: 104 TVNSPVYTDPPIKTKFGYHIIMVEGKK 130


>gi|159475603|ref|XP_001695908.1| peptidyl-prolyl cis-trans isomerase, parvulin-type [Chlamydomonas
           reinhardtii]
 gi|158275468|gb|EDP01245.1| peptidyl-prolyl cis-trans isomerase, parvulin-type [Chlamydomonas
           reinhardtii]
          Length = 255

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 8/91 (8%), Positives = 20/91 (21%), Gaps = 1/91 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R   +  P      +  +               +      + +        G        
Sbjct: 161 RPSSWKEPVVTRTREEALAMIEHFHSMLVKGEVEFAALAAQESHCSSAKRGGDLGEFGRG 220

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
           ++   F++          + P  +  GV  I
Sbjct: 221 EMQKPFEDATYALKVGELSGPVFSDSGVHLI 251


>gi|311744939|ref|ZP_07718724.1| putative peptidyl-prolyl cis-trans isomerase [Algoriphagus sp. PR1]
 gi|126577446|gb|EAZ81666.1| putative peptidyl-prolyl cis-trans isomerase [Algoriphagus sp. PR1]
          Length = 702

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 31/111 (27%), Gaps = 2/111 (1%)

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
            K   +           +LFS        +  V+ + ++                ++   
Sbjct: 336 YKISDQYEGAARMRASHILFSTEGMDDAAKANVRAQAEEVLADLKGGGNFALAASQYGQD 395

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICD 274
               + G   Y  ++D    F   +   KS+    N   T+ G   + +  
Sbjct: 396 GTSQNGGDLGYFKKADFVEPFAEAVFAAKSEGLINNLVETEYGFHIVEVTG 446


>gi|195131267|ref|XP_002010072.1| GI15719 [Drosophila mojavensis]
 gi|193908522|gb|EDW07389.1| GI15719 [Drosophila mojavensis]
          Length = 164

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 8/110 (7%), Positives = 23/110 (20%), Gaps = 1/110 (0%)

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           + P   Q +  +   +   R   +   +     +           +              
Sbjct: 51  DAPNEVQCLHLLVKHKGSRRPSSWREENITRTKEEAQMLLEIYRNKIVNNEATFEELARS 110

Query: 222 FASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
           ++        G         +   F+           ++   T  G+  I
Sbjct: 111 YSDCSSAKRGGDLGKFGRGQMQAPFEKAAFALKVGQLSDIVDTDSGLHII 160


>gi|170055273|ref|XP_001863510.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Culex
           quinquefasciatus]
 gi|167875254|gb|EDS38637.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Culex
           quinquefasciatus]
          Length = 135

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             Q +I +A E              ++        G   +     +   FQ+   +   +
Sbjct: 50  EKQSKILEAMEKLKEGQPFNVVATAYSED-KATKGGDLGWQPRGAMVGPFQDAAFELPIS 108

Query: 257 TTN-------PYVTQKGVEYIAICDKR 276
           T         P  T+ G   I +  K+
Sbjct: 109 TIGTPRYTDPPIKTKFGYHIIMVEGKK 135


>gi|149042165|gb|EDL95872.1| rCG36372, isoform CRA_b [Rattus norvegicus]
          Length = 80

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 10/81 (12%), Positives = 22/81 (27%), Gaps = 8/81 (9%)

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------LLKKSQN 255
            +A E      +      +++        G   ++    +   FQ               
Sbjct: 1   MEAMEKLKSGMRFSEVATQYSED-KARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPV 59

Query: 256 NTTNPYVTQKGVEYIAICDKR 276
            T  P  T+ G   I +  ++
Sbjct: 60  FTDPPVKTKFGYHIIMVEGRK 80


>gi|224476899|ref|YP_002634505.1| putative foldase protein prsA 1 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421506|emb|CAL28320.1| putative foldase protein prsA 1 [Precursor] [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 330

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 66/243 (27%), Gaps = 10/243 (4%)

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
            ++ K    + I  +  +  + K      S+ V+   +                 +    
Sbjct: 44  EDVMKKIGNDQIANSSFEILLGKLLEKKYSDKVDTKDIDQQIKDEQKQYGGKDQFESALK 103

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                      Q       K   M K    + E+               LI+        
Sbjct: 104 QQGMSLNDYKEQKKLQAYQKQLLMDKVKVSDKELK-----DDTKKASHILIKVKSDDKDK 158

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQF-Q 247
             L ++   +K  +  +E      K     +K +  K      G   Y+++  +   F +
Sbjct: 159 EGLSDKEAKKKAEEIHKEVEKNPDKFGEIAKKESMDKASAKKDGSLGYVIKGQMVKPFDK 218

Query: 248 NLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
            L K   +  ++   T  G   I            + ++ L +Q    K++K     V  
Sbjct: 219 ELFKLKDSQISDVVKTDYGYHIIKAD---KPTDFSSERSKLKSQIIQNKVQKDPQILVDA 275

Query: 308 LRS 310
            + 
Sbjct: 276 YKD 278


>gi|153814526|ref|ZP_01967194.1| hypothetical protein RUMTOR_00740 [Ruminococcus torques ATCC 27756]
 gi|317500569|ref|ZP_07958790.1| hypothetical protein HMPREF1026_00733 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089331|ref|ZP_08338232.1| hypothetical protein HMPREF1025_01815 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848020|gb|EDK24938.1| hypothetical protein RUMTOR_00740 [Ruminococcus torques ATCC 27756]
 gi|316898002|gb|EFV20052.1| hypothetical protein HMPREF1026_00733 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330405512|gb|EGG85044.1| hypothetical protein HMPREF1025_01815 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 356

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/324 (9%), Positives = 74/324 (22%), Gaps = 22/324 (6%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ-- 66
           +  F K      +  +     +        +     T+  E +  G ++    +++ Q  
Sbjct: 1   MVRFGKKAALLAMAGVLTAASVTGCSGAIDAEATVVTVGKEKVPLGVVNFYARMMQGQYE 60

Query: 67  ---------------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
                            +   +K   + +    ++  E                      
Sbjct: 61  TYYAGMMGTTAEELWTQDAGDDKTYEESVKDSVMEAVENMYLISQHSGEYEVVLTEDEKE 120

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
               +AE F      +        +    + +    +++    K      E  ++++  +
Sbjct: 121 AIQKAAEQFDKDNKDESKEAVSGYRKDIEKYLELMTIQSKMSEKMREGVNEEVSDEEAAQ 180

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
                 Y   T                 K    AE    R     +     A    +V  
Sbjct: 181 KSMEYVYFSYTSTDESGSVTELTDEEKAKAKSTAETIAERAKAGEDFAAVAAELGTEVQK 240

Query: 232 GKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA 290
                   S      +      ++ + T    +  GV    +        +        A
Sbjct: 241 TAFDAKSTSPDAALIEAANALAAEGDVTGAIESDAGVYVAKLTS----LLDREATDQKKA 296

Query: 291 QNTPTKIEKHEAEYVKKLRSNAII 314
                + ++     +KK R    I
Sbjct: 297 SIIEERKQEQYDSLLKKWRKETDI 320


>gi|332861031|ref|XP_001139476.2| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4-like [Pan troglodytes]
          Length = 94

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------LLKKS 253
           +I +A E      +      +++        G   ++    +   FQ             
Sbjct: 13  KIMEAMEKLKSGMRFNEVAAQYSED-KARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDK 71

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
              T  P  T+ G   I +  ++
Sbjct: 72  PVFTDPPVKTKFGYHIIMVEGRK 94


>gi|303327131|ref|ZP_07357573.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863119|gb|EFL86051.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
          Length = 373

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 80/288 (27%), Gaps = 33/288 (11%)

Query: 40  SRIRTTINGEVIT----DGDISKRIALLKLQK-----INGELEKIAVQELIVETLKKQEI 90
             +  T+NGE +        +  R A L   +             A+  LI+  L +QE+
Sbjct: 30  EGVVATVNGEPVHLRSVQSLLDSRSAALGTLQSSSLENMKLRYGEALGTLIIHALVRQEL 89

Query: 91  EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
           E   I      ++    Q          D S FL  + + +  ++  +          K 
Sbjct: 90  EHRQIPVGDAALDLAVAQV--RGDYEPGDLSRFLADESLDEADWQALMRDHLAMLTFEKR 147

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
             +        E+ A  ++ +        +   L                   +   +  
Sbjct: 148 VLLSGIRVGLDEVRAYYREHQADFQLPETLDLCL----------------ISGEERAALD 191

Query: 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKG-VEY 269
                     K       V   +   +   ++ P +       +     P   Q G  + 
Sbjct: 192 VFCAAFPAGRKTPRSDLLVQCLE---VRGDEVPPPWNKDTSVLKPGACAPARRQNGSWQT 248

Query: 270 IAICDKRDLGGEIALKAY--LSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +A+ +++         AY  +       K      ++++   S A+I 
Sbjct: 249 VALVERQKAHSLDMADAYPLIEHILLEQKKNAAFEQWLEGSLSRAVIK 296


>gi|327480810|gb|AEA84120.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas stutzeri DSM
           4166]
          Length = 98

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 6/77 (7%), Positives = 19/77 (24%), Gaps = 1/77 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-N 255
             +      ++             K+++       G    +    +      ++ K    
Sbjct: 18  KTEAEAAQLKKRLANGEAFDVLARKYSTCPSGKKGGDLGEVRLGQMVRSIDQVIFKKPLR 77

Query: 256 NTTNPYVTQKGVEYIAI 272
               P  +Q G   + +
Sbjct: 78  EVHGPVKSQFGYHLVQV 94


>gi|72110370|ref|XP_788025.1| PREDICTED: similar to peptidyl-prolyl cis/trans isomerase
           [Strongylocentrotus purpuratus]
 gi|115972960|ref|XP_001189684.1| PREDICTED: similar to peptidyl-prolyl cis/trans isomerase
           [Strongylocentrotus purpuratus]
          Length = 152

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 9/106 (8%), Positives = 23/106 (21%), Gaps = 1/106 (0%)

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
             +    +       R   +            +Q       +         +     +  
Sbjct: 43  KVRCSHLLVKHRDSRRPASWKDDRITRTKDDALQILKGHRAKIVAGDVTLGDLASTESDC 102

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                 G   +   + +   F+    K      ++P  T  G+  I
Sbjct: 103 SSAHKKGDLGFFGRNQMQKPFEEASFKLEVGQMSDPVFTDSGIHII 148


>gi|170690702|ref|ZP_02881868.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           graminis C4D1M]
 gi|170143951|gb|EDT12113.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           graminis C4D1M]
          Length = 250

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/270 (11%), Positives = 72/270 (26%), Gaps = 26/270 (9%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              I+ EV+   D+ + I LLKL            + LI + ++ +    +         
Sbjct: 4   IVRIDDEVV---DVGEFIRLLKLTGQ--------FESLIEQIVRDKLTVHAAKKQGIVVT 52

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                + A           +    Q +   +         I   + +   + +    +  
Sbjct: 53  ADDIQERADQFRRVRGLHRATDMNQYLDVLNVSLDEFEAFITDGLYQEKMLDQV-GNDAA 111

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +               +   VL S             K  +     R       +   + 
Sbjct: 112 VKDYFALNSPKFDAIEVSHIVLDSEG-----------KAKEMISYLRDDPDSFADMAREH 160

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKG--VEYIAICDKRDLG 279
           +      + G    +L   L P  +  +  +   +   P+ +      E  A+  K    
Sbjct: 161 SIADTREAGGVIGKVLRGSLKPDIEAKIFNAAVGDLLGPFPSADRSCFEIFAVTAKYPAT 220

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
            +  + A +      + +     E+V + R
Sbjct: 221 LDADVAAEVRRLLRESWLIARAQEHVIEAR 250


>gi|145609147|ref|XP_367478.2| hypothetical protein MGG_07389 [Magnaporthe oryzae 70-15]
 gi|145016566|gb|EDK00996.1| hypothetical protein MGG_07389 [Magnaporthe oryzae 70-15]
          Length = 178

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 10/177 (5%), Positives = 29/177 (16%), Gaps = 3/177 (1%)

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
             D +               S      F                   +   +    +   
Sbjct: 1   MADQHPETGLPPNWEVRLSKSKNLPYYFNTSNTTSRWEPPPGTDTDKLKQYM--GKYHSS 58

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
               +       +    +       R   +   +     +   +      +         
Sbjct: 59  ALPSDSPQAGQIRAAHLLIKHRDSRRPSSWKEENITRTKEDARRIIEAHKDRIASGEASL 118

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                  +        G   +    D+  +F+           +    T  G+  I 
Sbjct: 119 AALATTESDCSSARKRGDLGFFGRGDMQKEFEEAAFALKPGEISGVVDTASGLHLIE 175


>gi|322834954|ref|YP_004214981.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rahnella sp. Y9602]
 gi|321170155|gb|ADW75854.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rahnella sp. Y9602]
          Length = 122

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 1/78 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-N 255
             + +  D  E            +K ++       G      +  + P F  ++  +   
Sbjct: 42  KEEAQALDLLEQLKNGGDFEKLAKKHSTCPSGKKGGHLGEFKQGAMVPAFDKVVFSAPLI 101

Query: 256 NTTNPYVTQKGVEYIAIC 273
               P  TQ G   I I 
Sbjct: 102 EPQGPLHTQFGYHIIKIL 119


>gi|294788519|ref|ZP_06753761.1| putative peptidyl-prolyl cis-trans isomerase [Simonsiella muelleri
           ATCC 29453]
 gi|294483396|gb|EFG31081.1| putative peptidyl-prolyl cis-trans isomerase [Simonsiella muelleri
           ATCC 29453]
          Length = 609

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/391 (9%), Positives = 91/391 (23%), Gaps = 85/391 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIV-SYKSWAMSSRIRTTINGEVITDGDISKR 59
           M  K+F S+            LI    +    S  S+  +++    I  ++IT   +   
Sbjct: 1   MKIKMFASIEKHRTTAQVLLALIGISFIGFGASQFSFGSNNQYIVKIGDQIITRYQLDNA 60

Query: 60  IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR----NTGL 115
           +         G   +   ++L+      +  ++ G++     +    V +      N   
Sbjct: 61  VR-----ANQGATREAVFRQLMNRAYLTEGAKQLGLSISETELKQSIVNNKNFHDANGKF 115

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK-------------------------- 149
           S E F   L   G+ +  F +      +   + K                          
Sbjct: 116 STELFKQILASNGLSEQQFLESERETLLLESIGKILGSNVVADSQVAQFLNSTMAMRKIR 175

Query: 150 ------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
                   F  K    +  +       +        ++          L  +  V     
Sbjct: 176 NVGVNPQAFESKVKIDDASLKKFYDANQKSYTLPQAVQFEFVRFSPQTLAEKETVSDEEV 235

Query: 204 DAEESRLR---------------LPKDCNKLEKFAS-----------------------K 225
              +  ++                  + +K ++ A                         
Sbjct: 236 KQAQQDVQNSSTNKREIAHILIPFGSNKDKAKEEAQKIAKEAQANPDKFAELAKKYSQDS 295

Query: 226 IHDVSIGKAQYLLES---DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEI 282
                 G                 +          ++   +  G   I   +  +     
Sbjct: 296 DSKDKSGIIGEFSAQGNLVNDAFKKAAFGVESGGVSDVVESNFGYHIIRAKNLGNATASD 355

Query: 283 ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
              A  +A+    K ++   +  ++L + A 
Sbjct: 356 DTAARDAAKL--KKAQQTYTKLREELSAAAF 384


>gi|205372831|ref|ZP_03225640.1| protein export protein prsA [Bacillus coahuilensis m4-4]
          Length = 242

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/274 (8%), Positives = 69/274 (25%), Gaps = 41/274 (14%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING 70
            ++   T    ++   ++          +  +       +IT+ D+       +L     
Sbjct: 4   GYMYKRTVSLGIVSLLLLSGC------NNQEVIVEAENTLITEEDLYN-----QLLNNYR 52

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
              + A+++L +  + +           S  +           G   E++ +        
Sbjct: 53  PQVEQALRDLTLLHILE-----QNYDVSSEELQLELENAKEALGSQYEEYLNEYQIN--- 104

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
               ++    Q     + +   +      E ++                          +
Sbjct: 105 ----EEQFKEQLALQVLQRKAAISTLEATEKDLQDFYTTWTPA------------INVRH 148

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL----ESDLHPQF 246
            L +     K++ D  +S              +      S G    +     ++      
Sbjct: 149 ILVSDKETAKKVLDELQSGTAFEDLAETYSIDSLTAS--SGGNLGTISYLERDAFSTEML 206

Query: 247 QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           Q + +   N  + P  +  G   + I +K     
Sbjct: 207 QAMDELQVNEISQPIESPYGFHIVEITEKERKKT 240


>gi|297568735|ref|YP_003690079.1| hypothetical protein DaAHT2_0756 [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924650|gb|ADH85460.1| hypothetical protein DaAHT2_0756 [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 544

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/261 (10%), Positives = 74/261 (28%), Gaps = 16/261 (6%)

Query: 58  KRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
           + +A L L   N E   +A    ++   ++          +   +    V       L +
Sbjct: 278 EELADLVLIDNNQEPITVAQFWAVLGREQEFRRRHQFAAEEFERLKQRVVNGIIAQTLIS 337

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
            +  +    +        Q+     +  ++       +    E EI    Q+   +  R 
Sbjct: 338 WEADARDYHRREPLAPIYQFYRQHRLIQELDARLIQPRTVVEEAEIEDYYQRHPELFTRP 397

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
             +  +LF+ P   + +              R  +    +     +      +  +   +
Sbjct: 398 EELSFMLFTGPAELVDD-------------LRREIVGGRDFTAAISRHSPGGAPRQRLAV 444

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPT 295
            E D         + +    +  +        + +  +         A++  +       
Sbjct: 445 TELD-PAVAAVAAELAPGEVSRLFPLHNHYALLRLSGRHPGRLQPLAAVREEIRQTLQEQ 503

Query: 296 KIEKHEAEYVKKLRSNAIIHY 316
           K ++  AE + +LR +A I  
Sbjct: 504 KEQEVRAELINRLRQHAAIEI 524


>gi|32490767|ref|NP_871021.1| hypothetical protein WGLp018 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25165973|dbj|BAC24164.1| surA [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 452

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/304 (12%), Positives = 99/304 (32%), Gaps = 7/304 (2%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ-KINGELE 73
           +L      I FC+   V+        +I + +N +VI   D+ + I+      +     E
Sbjct: 34  ILLFKIFFISFCLFFNVNKSYSKEIDKIISIVNKKVILKSDVERIISDKNFNFENYFNSE 93

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
             +++ L++  L   E+ K+ +       +   + +        +  +    K+ I D  
Sbjct: 94  SESLKNLVLNKLIIDEVIKNKLNEYETFFSSDLLFNVNQNIFLEKYINLNKKKKEITDKS 153

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ--KMKNITVREYLIRTVLFSIPDNK 191
             +      ++ ++       K    E EI        +KN  ++  +   +L +     
Sbjct: 154 ILKLEPNNFLYWNIQYEKLKKKIYISEKEINYLSTILFLKNNNIKININHYILENPKIFS 213

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
            +N    ++ + +  +           + K+      V      +     L   F+  L 
Sbjct: 214 KKNIIEYKQIVNNLFKLLKNDKLSEKLIFKYLKNNKIVLGNFIGWNNLIKLPKYFRIFLF 273

Query: 252 --KSQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
             + +      +   K +    I + +            ++    +  + E +   Y+K+
Sbjct: 274 DLQKRKKIFGLFFLNKNLHLFQIKNIKYDKKIETEIKIKHILLIPSENRDENNTYFYLKQ 333

Query: 308 LRSN 311
           +++ 
Sbjct: 334 IKNQ 337



 Score = 42.7 bits (98), Expect = 0.078,   Method: Composition-based stats.
 Identities = 21/190 (11%), Positives = 54/190 (28%), Gaps = 3/190 (1%)

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
                   +Y  I        K  F L + N  + +   K    +  +   +    +  I
Sbjct: 258 WNNLIKLPKYFRIFLFDLQKRKKIFGLFFLNKNLHLFQIKNIKYDKKIETEIKIKHILLI 317

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQ- 245
           P              +   +   +     N  +K++      +  G+  Y  +       
Sbjct: 318 PSENRDENNTYFYLKQIKNQISSKEISFSNAAKKYSEDLYSALQGGEIDYDYKKIFDNFT 377

Query: 246 FQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEY 304
              + K  +   T P  + +G   + + + + +       K          K+ +    +
Sbjct: 378 LNKINKIKKGEITGPIRSLQGWHLVKLMNIKIVDNTYKIYKENAYKILFEKKLSEVIYNW 437

Query: 305 VKKLRSNAII 314
           ++   +N+ I
Sbjct: 438 LENEYNNSYI 447


>gi|213963094|ref|ZP_03391352.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
           sputigena Capno]
 gi|213954178|gb|EEB65502.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
           sputigena Capno]
          Length = 705

 Score = 53.5 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/263 (11%), Positives = 66/263 (25%), Gaps = 19/263 (7%)

Query: 46  INGEVIT--DGDISKRIALLKLQKINGELEKI----------AVQELIVETLKKQEIEKS 93
           I+ + IT  DG+I   I   + Q        I          A      +    + ++  
Sbjct: 206 IDDKNITVTDGEIQDYIKKHEKQFKQEAYRNIQYIVAAEKPSAKDMEAEKQSLLKLLQPE 265

Query: 94  GITFDSNTVNYFFVQHAR--NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
            +       N      A+  N     +  S+        +    +     +++   V   
Sbjct: 266 VVYNSKTNSNDTLPGFAKTKNIKEFVDRNSNVPYDSTFVNKDNIRSAYADTLYALPVGKV 325

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
           F     +  +++     K     V+   I                  ++    AEE   +
Sbjct: 326 FGPYEEDGNIKLSRMVAKEPAGAVKASHILIAYQGSQAATPNTTRTKEEAKAKAEELLAK 385

Query: 212 LPKDCNKLEKFASKIH-----DVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKG 266
                    + A +         S G   +  +  +   F+     +         T  G
Sbjct: 386 AKTAGTDFAELARENSEEPGAAYSGGDLGFFGKGAMVKPFEEFAFANPVGNIGLVETDFG 445

Query: 267 VEYIAICDKRDLGGEIALKAYLS 289
              + +  K +      +   + 
Sbjct: 446 FHVVKVTGKAEAVNIATISRAVE 468



 Score = 39.3 bits (89), Expect = 0.87,   Method: Composition-based stats.
 Identities = 12/119 (10%), Positives = 29/119 (24%), Gaps = 1/119 (0%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             +  I   +     L    +  +        + +     + E              Q  
Sbjct: 581 EKKAAILKEKAKGNSLQAIASANKTEVKSATGLVMKNPTIIGEGREPKVVGAAFGLKQGQ 640

Query: 257 TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            + P   +  V  I +  +         +          + E+     +K L ++A I 
Sbjct: 641 ISKPIDGENAVYVIQLISETIAPAITDYRTQA-ETVENLRTERAAQNILKSLENSATIK 698


>gi|195400745|ref|XP_002058976.1| GJ15247 [Drosophila virilis]
 gi|194141628|gb|EDW58045.1| GJ15247 [Drosophila virilis]
          Length = 165

 Score = 53.5 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 6/91 (6%), Positives = 17/91 (18%), Gaps = 1/91 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R   +   +     +           +              ++        G        
Sbjct: 71  RPSSWREENITRTKEEAQMLLEIYRNKIVNSEATFEELARSYSDCSSAKRGGDLGKFGRG 130

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            +   F+           ++   T  G+  I
Sbjct: 131 QMQAPFEKAAFALKVGQLSDIVDTDSGLHII 161


>gi|194741062|ref|XP_001953008.1| GF17558 [Drosophila ananassae]
 gi|194908758|ref|XP_001981834.1| GG11384 [Drosophila erecta]
 gi|195504429|ref|XP_002099075.1| GE23581 [Drosophila yakuba]
 gi|190626067|gb|EDV41591.1| GF17558 [Drosophila ananassae]
 gi|190656472|gb|EDV53704.1| GG11384 [Drosophila erecta]
 gi|194185176|gb|EDW98787.1| GE23581 [Drosophila yakuba]
          Length = 130

 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             Q +I +A E      K       ++        G   + +   +   FQ+       +
Sbjct: 45  EKQGKITEAMEKLKAGQKFPEVAAAYSED-KARQGGDLGWQIRGAMVGPFQDAAFALPIS 103

Query: 257 TT-------NPYVTQKGVEYIAICDKR 276
           T         P  T+ G   I +  K+
Sbjct: 104 TVNNPVYTDPPIKTKFGYHIIMVEGKK 130


>gi|83755097|gb|ABC46409.1| prolyl cis/trans isomerase [Trypanosoma cruzi]
          Length = 117

 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 7/104 (6%), Positives = 26/104 (25%), Gaps = 1/104 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
            +           +         +     + +  + A+          +   + +     
Sbjct: 11  HLLIKFDGSRNCVSHRTGKSTADVTYDAALAELKQWAKRIADGEITFEDAARQRSDCGSY 70

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
            S G   +     +   F++  +  +    +    T+ G+  I 
Sbjct: 71  NSGGDLGFFGPGVMMKPFEDAARSLNVEEVSGVVRTESGLHIIK 114


>gi|290997217|ref|XP_002681178.1| rotamase domain-containing protein [Naegleria gruberi]
 gi|284094801|gb|EFC48434.1| rotamase domain-containing protein [Naegleria gruberi]
          Length = 172

 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/155 (10%), Positives = 36/155 (23%), Gaps = 1/155 (0%)

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            E  S       I     +      +     + N+      N + E       +      
Sbjct: 14  KESSSRPGVFYYINKFTNETQWEKPTKSAKPLVNNNNTNNNNDDGEQVKVSHLLIKHNQS 73

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
                    +I  +K      ++   +D   +     K        +        G   +
Sbjct: 74  RNPSSWKEKNITRSKKDATEILEGLREDIFNAEDMAEKFQELASVHSDCSSAKRGGDLGF 133

Query: 237 LLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                +   F++   +      ++   T  GV  I
Sbjct: 134 FGRGQMQKPFEDASFRLKIGELSDIVSTDSGVHII 168


>gi|268319932|ref|YP_003293588.1| peptidylprolyl isomerase [Lactobacillus johnsonii FI9785]
 gi|262398307|emb|CAX67321.1| peptidylprolyl isomerase [Lactobacillus johnsonii FI9785]
          Length = 298

 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/301 (11%), Positives = 75/301 (24%), Gaps = 39/301 (12%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
              +     I    +     +   T  G  IT+     ++          +  +  +  +
Sbjct: 8   AATVLAFAGIALSATACSGGKAVVTYKGGKITESQYYDKMK-------ESQAGQSTLASM 60

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           IV    + +  K       +          +        F S L++ G+  + FK  L  
Sbjct: 61  IVSDALESQYGKDVTQKQVDKEYN------KYKKQYGSQFDSVLEQNGMTASTFKDNLKT 114

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
             +    +    + K    + +              E  ++ +L              + 
Sbjct: 115 NLLTEAAL--KHIKKITPAQEKKAWKSY------QPEVTVQHIL-----------VSKKS 155

Query: 201 RIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESD---LHPQFQNLLKKSQNN 256
             +D  +            +K+++        GK      +D            K     
Sbjct: 156 TAEDVIKQLQDGGDFKKLAKKYSTDTATKNDAGKLPAFDSTDSTLDSSFKTAAFKLKTGE 215

Query: 257 TTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH--EAEYVKKLRSNAI 313
            T  P  TQ G   I +      G     K  +  Q   +  E        +  +   A 
Sbjct: 216 ITTTPVKTQYGYHVIKMIKHPAKGTLKEHKKQIDNQIYQSMSEDQNVMRSVIATVLKRAD 275

Query: 314 I 314
           +
Sbjct: 276 V 276


>gi|257125090|ref|YP_003163204.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptotrichia
           buccalis C-1013-b]
 gi|257049029|gb|ACV38213.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptotrichia
           buccalis C-1013-b]
          Length = 608

 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 73/261 (27%), Gaps = 12/261 (4%)

Query: 59  RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
           ++  +  Q    +    AV E I        + ++   +    VN       +N     +
Sbjct: 254 KVKAVVAQNGEYKYTNEAVNEQI-----INSVSQTQQGYSDKLVNELKTTLKKNLDKFVK 308

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
                       D        ++                +          K  +   +  
Sbjct: 309 ISEKAKAAGIKADPDLIGVDQLRDYSQKYYNYLIDSYKPDDATLQARFNAKRDSYNTQNS 368

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYL 237
           +   V+         +    +K+  +  ++  +      K ++F+       + G     
Sbjct: 369 IGGYVIGEEYQAGESDFEGAKKQADEIMKTTTK-DNFAAKAKEFSKDPESAKNGGSLGET 427

Query: 238 -LESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN-TP 294
              S L P+F N +K     +   P  TQ G   I I  K      +A  +++       
Sbjct: 428 ADLSQLVPEFANAVKNGKAGDIVGPIKTQFGYHIIYIQSKDPKNDNVAKVSHILITPTIS 487

Query: 295 TKIEKHEAEYVKKLRSNAIIH 315
              ++   + V+ L+  A I 
Sbjct: 488 EASKQKVIKKVQNLK--AEIE 506



 Score = 38.1 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 72/241 (29%), Gaps = 27/241 (11%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSS--RIRTTINGEVITDGDISKRIALLKLQKIN--- 69
           ++  + + ++   +  +    +   +   +  T+NG  I   D  +    LK +      
Sbjct: 17  MMGIFGIGMLISGILFLKNNVFGALNHREVIATVNGIKIYRDDFERESYSLKNELNEITQ 76

Query: 70  ---------------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
                                  + +  +Q +I + +     +  GI    + VN  F  
Sbjct: 77  QKIQQLAQVGTNSGNIKSVPDDLVNEYVLQLIINKEILLSSAKNLGIKVSGSDVNKEFEN 136

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF-MLKYGNLEMEIPANK 167
           + + + L  ++F  +L   G   + FKQ +  Q I   + +  F   K    E++    +
Sbjct: 137 YRKQSKLGKKEFGEYLRSVGYNVSSFKQTIKDQKIIEKMREKIFSNDKITEEEIKKAYER 196

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
            K       +                    +        + + ++       E   +K+ 
Sbjct: 197 NKYTQSFANQDFDDVKDQIKETMTQDKNIMILNSYLAKAKEKTKIVFKDKNFENMYTKVK 256

Query: 228 D 228
            
Sbjct: 257 A 257


>gi|227524701|ref|ZP_03954750.1| peptidylprolyl isomerase [Lactobacillus hilgardii ATCC 8290]
 gi|227088185|gb|EEI23497.1| peptidylprolyl isomerase [Lactobacillus hilgardii ATCC 8290]
          Length = 293

 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 78/280 (27%), Gaps = 37/280 (13%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           +I     ++S+   A  S+   T NG  IT+                    K   Q++I+
Sbjct: 5   LIVLAGVLMSFTLAACGSKSVATTNGGKITES-------AYYSSLKGTSSGKQVFQQMIL 57

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
             + +++  K       + VN  F ++ +  G S              +      L    
Sbjct: 58  NKVLEKQYGKK---VKDSAVNKDFNKYKKQYGSSFNAVL-------QQNGMTASQLKDSI 107

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
               +++          + ++ A           +  +  +L S           ++   
Sbjct: 108 RSNLLLQQAVRDNTKFTDAQLKA----QFKSYQPKVTVNQILVSKKSTAETVIKQLKA-- 161

Query: 203 KDAEESRLRLPKDCNKLEKFASK-IHDVSIGKA---QYLLESDLHPQFQNLLKKSQNNTT 258
                         +  +K+++        G+         S      +   K      T
Sbjct: 162 ---------GKSFSSLAKKYSTDTATKNKGGRISAFDNTNTSLDSNFKKAAFKLKNGEYT 212

Query: 259 N-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
             P  TQ G + I + +    G     ++ L  Q    ++
Sbjct: 213 KTPVKTQYGYQVIQMVNHPAKGTYKDHESELKTQLVDKRL 252


>gi|330503610|ref|YP_004380479.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina NK-01]
 gi|328917896|gb|AEB58727.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina NK-01]
          Length = 92

 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 8/77 (10%), Positives = 18/77 (23%), Gaps = 1/77 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-N 255
             +      ++             K ++       G    +    +      ++ K    
Sbjct: 12  KTEAEAAALKKRIAAGEAFDVLARKHSTCPSGKKGGDLGEVRPGQMVRAVDQVIFKKPLR 71

Query: 256 NTTNPYVTQKGVEYIAI 272
               P  TQ G   I +
Sbjct: 72  EVHGPVKTQFGYHLIQV 88


>gi|187918726|ref|YP_001887757.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phytofirmans PsJN]
 gi|187717164|gb|ACD18387.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           phytofirmans PsJN]
          Length = 250

 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/270 (11%), Positives = 71/270 (26%), Gaps = 26/270 (9%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              I+ EV+   D+++ I LLKL            + LI + ++ +    +         
Sbjct: 4   IVRIDDEVV---DVAEFIRLLKLTGQ--------FESLIEQIVRDKLTVHAAKKQGITVT 52

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                Q A           +    Q +   +         I   + +   + +    E  
Sbjct: 53  ADEIQQRADQFRRVRGLHRATDMNQYLDALNVSLDEFEAFITDGLYQEKMLDEI-GNEAA 111

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           I               +   VL S             K  +             +   + 
Sbjct: 112 IKDYFALNSPKFDAIEVSHIVLDSEG-----------KAKEMISYLHDDPDSFADMAREH 160

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQ-NLLKKSQNNTTNPYVTQKG--VEYIAICDKRDLG 279
           +      + G    +L   L P  +  +   +  +   P+ +      E  A+  K    
Sbjct: 161 SIADTREAGGVIGKVLRGSLKPDIEAKIFNAAVGDLLGPFPSADRSCFEIFAVTAKYPAT 220

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
            +  + + +        +     E+V + R
Sbjct: 221 LDADVASEVRRLLREGWLISRAQEHVIEAR 250


>gi|294656749|ref|XP_459062.2| DEHA2D13464p [Debaryomyces hansenii CBS767]
 gi|199431711|emb|CAG87230.2| DEHA2D13464p [Debaryomyces hansenii]
          Length = 177

 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 7/165 (4%), Positives = 30/165 (18%), Gaps = 2/165 (1%)

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
             A     +                          +   + K         +  +     
Sbjct: 11  NWAIRVSRTHNKEYYLNQATKESSWEPPFGTDNDKLQKYIAKYKANGNKPVIPEDGKVRA 70

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
             +   + +    +                +       ++         +     +    
Sbjct: 71  SHILVKSNQSRRPK-SWKYPDGITRTRDEAILLLKSYQDKILGGEISLQDLASTESDCSS 129

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
               G   +  +  + P F+      +    ++   +  G+  I 
Sbjct: 130 HAQGGDLGFFGKGQMQPSFEEAAFGLNVGEISDIIESDSGIHLIQ 174


>gi|118387307|ref|XP_001026765.1| PPIC-type PPIASE domain containing protein [Tetrahymena
           thermophila]
 gi|89308532|gb|EAS06520.1| PPIC-type PPIASE domain containing protein [Tetrahymena thermophila
           SB210]
          Length = 118

 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/114 (13%), Positives = 29/114 (25%), Gaps = 1/114 (0%)

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
                I A     K+   R  L R     +     + +  V    +   +S         
Sbjct: 1   MNSQTIRAAHILQKHRGSRNPLDRVRNVQVTRTLDEAKKNVAAFREQIMKSADPQKTFME 60

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
             +K++      + G         +   F+           +N   +  GV  I
Sbjct: 61  IAQKYSECTSARNGGDLGEFGPGQMQESFEQAAYALKVGEISNLVESDSGVHII 114


>gi|46446030|ref|YP_007395.1| hypothetical protein pc0396 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399671|emb|CAF23120.1| hypothetical protein pc0396 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 375

 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/349 (12%), Positives = 103/349 (29%), Gaps = 54/349 (15%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMSS----------------RIRTTINGEVITDGD 55
           F+ +  T F+  +   +   + ++                     RI   ING+ I+  D
Sbjct: 16  FLVMKKTIFIASLSFFLTFYALEAIKSDDFLSSSRTEESKIFINNRILARINGKPISAYD 75

Query: 56  ISKRIALLKLQKINGELE-------------KIAVQELIVETLKKQEIEKSGITFDSNTV 102
           + K++ +   ++    L              K A+++LI + L   + ++S +   S  V
Sbjct: 76  LVKKMDVTFYKQFPQYLSSTEARYQYYQFSWKYALEDLINKELILADAQESKVEVTSGDV 135

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                       +++ D      ++          L         V    + +     + 
Sbjct: 136 RQEMELMFGPNIIASLDKIGLSFEEASKIVQGDILLKRMIGAR--VNGKAIRQVTPSRVR 193

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                       +R  +    + +I D  L+    + +           + +   KL++ 
Sbjct: 194 KSYEDFIKDPANIRLTIWNYKVLTIKDRNLKKSEEIAQAAYQLLRKGFSIEEVPAKLKE- 252

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQK---------------GV 267
                   +G+   +  S +    +  L KS     NP  T                   
Sbjct: 253 -----GKLLGRKGKVTVSKVIHNNEKELSKSYQQILNPLDTGMYSLPFENKSRVEHTTVY 307

Query: 268 EYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             + + +K          ++  L  +      ++    Y+KKLR +  +
Sbjct: 308 RILFVQEKIPGGYPSFKEMEPVLKERLLNQVADEETDLYLKKLREHFYV 356


>gi|91779615|ref|YP_554823.1| putative peptidyl-prolyl isomerase [Burkholderia xenovorans LB400]
 gi|91692275|gb|ABE35473.1| putative peptidyl-prolyl isomerase [Burkholderia xenovorans LB400]
          Length = 250

 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/270 (12%), Positives = 71/270 (26%), Gaps = 26/270 (9%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              I+ EV+   D+ + I LLKL            + LI + ++ +    +         
Sbjct: 4   IVRIDDEVV---DVGEFIRLLKLTGQ--------FESLIEQIVRDKLTVHAAKKQGITVS 52

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                Q A           +    Q +   +         I   + +   + +    E  
Sbjct: 53  ADEIQQRADQFRRVRGLHRATDMNQYLDALNVSLDEFEAFITDGLYQEKMLDEI-GNEAA 111

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           I               +   VL S             K  +             +   + 
Sbjct: 112 IKDYFALNSPKFDAIEVSHIVLDSEG-----------KAKEMISYLHDDPDSFADMAREH 160

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQ-NLLKKSQNNTTNPYVTQKG--VEYIAICDKRDLG 279
           +      + G    +L   L P  +  +   +  +   P+ +      E  A+  K    
Sbjct: 161 SIADTREAGGVIGKVLRGSLKPDIEAKIFNAAVGDLLGPFPSADRSCFEIFAVTAKYPAT 220

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
            +  + A +      + +     E+V + R
Sbjct: 221 LDADVAAEVRRLLRESWLIARAQEHVIEAR 250


>gi|145255175|ref|XP_001398885.1| peptidyl-prolyl cis-trans isomerase pin4 [Aspergillus niger CBS
           513.88]
 gi|134084475|emb|CAK43229.1| unnamed protein product [Aspergillus niger]
          Length = 124

 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 6/85 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               + ++A E      K      +F+        G   +     L   F+      + +
Sbjct: 41  EKFSKKEEALEKLRNGAKFDEVAREFSED-KARQGGSLGWKTRGSLDATFEKAAYDLEPS 99

Query: 257 TTN-P----YVTQKGVEYIAICDKR 276
           TT  P      T  G   I +  ++
Sbjct: 100 TTGNPKYVDVKTGFGYHIIMVEGRK 124


>gi|81428241|ref|YP_395241.1| peptidylprolyl isomerase [Lactobacillus sakei subsp. sakei 23K]
 gi|123564491|sp|Q38XZ9|PRSA_LACSS RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|78609883|emb|CAI54930.1| Protein maturation protease precursor (peptidylprolyl isomerase)
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 303

 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/307 (11%), Positives = 79/307 (25%), Gaps = 39/307 (12%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           ++  + +     ++ +         S    T+ G  +T  +  K I             K
Sbjct: 1   MMKKWLLAAASLLMVV---TLAGCGSNTIATLKGGKVTQDEFYKEIKETSA-------GK 50

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             VQ++I++   +++     +T   +                 + + S            
Sbjct: 51  QQVQQMILQKALQEQYGSKSLTKKIDKTY----------NTYKKQYGSSFTSVLAQSGLT 100

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
                 Q     +              ++    +  +                  + L  
Sbjct: 101 TSSFKNQITTQMLANAALKANKKVTNADLKKQWKTYEPK------------VEVQHILVE 148

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESD--LHPQFQNLLK 251
           +    + +    +            +K+++        GK      +D  L P F+    
Sbjct: 149 KKDTAETVISELKKDNSTKNFTALAKKYSTDTGTKKDGGKLPVFDSTDTSLDPTFKTAAF 208

Query: 252 KSQNN--TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE--AEYVKK 307
           K + N  TT P  T  G   I +      G     K  L+ Q            A+   K
Sbjct: 209 KLKTNEYTTTPVKTSYGYHVIRMIKNPGKGKMADHKKTLTDQVYAKWANDQTVMAKVYTK 268

Query: 308 LRSNAII 314
           +   A +
Sbjct: 269 VLKKADV 275


>gi|323528886|ref|YP_004231038.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1001]
 gi|323385888|gb|ADX57978.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           CCGE1001]
          Length = 250

 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/270 (11%), Positives = 71/270 (26%), Gaps = 26/270 (9%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              I+ EV+   D+ + I LLKL            + LI + ++ +    +         
Sbjct: 4   IVRIDDEVV---DVGEFIRLLKLTGQ--------FESLIEQIVRDKLTVHAAKKQGIVVT 52

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                + A           +    Q +   +         I   + +   + +    +  
Sbjct: 53  ADEIQERADQFRRVRGLHRATDMNQYLDVLNVSLDEFEAFITDGLYQEKMLDEV-GNDAA 111

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +               +   VL S             K  +             +   + 
Sbjct: 112 VRDYFALNSPKFDAIEVSHIVLDSEG-----------KAKEMISYLHDDPDSFADMAREH 160

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKG--VEYIAICDKRDLG 279
           +      + G    +L   L P  +  +  +   +   P+ +      E  A+  K    
Sbjct: 161 SIADTREAGGVIGKVLRGSLKPDIEAKIFNAAVGDLLGPFPSADRSCFEIFAVTAKYPAT 220

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
            +  + A +      + +     E+V + R
Sbjct: 221 LDADVAAEVRRLLRESWLIARAQEHVIEAR 250


>gi|325088478|gb|EGC41788.1| peptidyl-prolyl cis-trans isomerase [Ajellomyces capsulatus H88]
          Length = 181

 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 11/168 (6%), Positives = 34/168 (20%), Gaps = 1/168 (0%)

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
                         + ++   +         + L +          D     G+    + 
Sbjct: 11  EVRHSNSKNLPYYFNPATKESRWEPPTGTDTEKLKVYMAEHHSGPADRYTSGGSGGGSVE 70

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
              +    +       R   +   +     +  ++         R       +     + 
Sbjct: 71  GKIRASHLLIKHRESRRPSSWRESEITRSKEEALEILRGHERRIRAGEATLGDIAMSESD 130

Query: 225 KIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                  G   +    ++  +F+           +    T  GV  I 
Sbjct: 131 CSSARKKGDLGFFGRGEMQTEFEEAAFALQPGQVSGIVETASGVHLIE 178


>gi|330721963|gb|EGG99901.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium
           IMCC2047]
          Length = 154

 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 49/152 (32%), Gaps = 13/152 (8%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
              +  +    I  +    +++ F +  + +    +  S     +NG+ I++ ++ +   
Sbjct: 3   IQSIKDNSQGMIAKIIVGLIVLTFALFGVDAIVGNSGGSSKAAVVNGDEISEFELLRAAD 62

Query: 62  LLKLQK-------------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
             K +               +  +   A++ELI   L  Q  ++  I   +  V+   +Q
Sbjct: 63  FFKRRMLQEMGANADPDLIDDQLVRARALEELIQRQLLLQAADEQAIFVANGRVDQAILQ 122

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           +         D + +             Y A 
Sbjct: 123 NESFQTNGVFDRNIYEYTLRNLQMTPVDYKAH 154


>gi|240282343|gb|EER45846.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Ajellomyces capsulatus
           H143]
          Length = 196

 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 11/168 (6%), Positives = 34/168 (20%), Gaps = 1/168 (0%)

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
                         + ++   +         + L +          D     G+    + 
Sbjct: 26  EVRHSNSKNLPYYFNPATKESRWEPPTGTDTEKLKVYMAEHHSGPADRYTSGGSGGGSVE 85

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
              +    +       R   +   +     +  ++         R       +     + 
Sbjct: 86  GKIRASHLLIKHRESRRPSSWRESEITRSKEEALEILRGHERRIRAGEATLGDIAMSESD 145

Query: 225 KIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                  G   +    ++  +F+           +    T  GV  I 
Sbjct: 146 CSSARKKGDLGFFGRGEMQTEFEEAAFALQPGQVSGIVETASGVHLIE 193


>gi|303239800|ref|ZP_07326324.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
 gi|302592737|gb|EFL62461.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
          Length = 355

 Score = 53.1 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/327 (10%), Positives = 86/327 (26%), Gaps = 42/327 (12%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE-------- 71
           F  I+  ++ +  +  +  S+    TI GE IT  + +  +   K +             
Sbjct: 14  FASILVLLLAVAGWLYYVNSTNYVATIKGEKITTDEFNFFLGSTKTEMETNANVDKTSET 73

Query: 72  ------------------LEKIAVQ-------ELIVETLKKQEIEKSGITFDSNTVNYFF 106
                              ++ A+        + I    K  ++E+  +    +T++   
Sbjct: 74  ALNEFWNTKVEGVPARDYAKQQALDSAKEFKIQYIKAKEKGLKLEEGDLKDVKSTLDNIK 133

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
              + N G        F     IG + ++  L    +    V+ +      +        
Sbjct: 134 SGMSSNYGGDKLGEEEFKKTYNIGYDRYENILKDLMLVYKYVEGELPTFSVSETEMKDYY 193

Query: 167 KQKMKNITVREYLIRTV----LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           K+    +              L +  +   Q +   + +  D  E               
Sbjct: 194 KKSASAVDTVSVRRIMFATVDLQTGKEFTEQEKKDKKAQADDVLEKIKAGGDAEKLAVDL 253

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT--TNPYVTQKGVEYIAICDKRDLGG 280
           +             +  +             ++    T+   TQ G   + + D+     
Sbjct: 254 SDDTTVKDNKGLFEVTSNSNTNIPGFQEWALEHKIGDTDILTTQYGYFVVKVEDR---TT 310

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKK 307
              +K  +       K  +    + K+
Sbjct: 311 YDEVKDKVKEAVETQKYLERLENWKKE 337


>gi|241948727|ref|XP_002417086.1| peptidyl prolyl cis/trans isomerase, putative [Candida dubliniensis
           CD36]
 gi|223640424|emb|CAX44676.1| peptidyl prolyl cis/trans isomerase, putative [Candida dubliniensis
           CD36]
          Length = 177

 Score = 53.1 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 19/77 (24%), Gaps = 1/77 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ- 254
             +Q   K  E       K        +        G   +  +  + P F+        
Sbjct: 98  ESIQILKKHLERILSGEVKLSELATTESDCSSHDRGGDLGFFSKGQMQPPFEEAAFNLHV 157

Query: 255 NNTTNPYVTQKGVEYIA 271
              +N   T  GV  + 
Sbjct: 158 GEVSNIIETNSGVHILQ 174


>gi|147817758|emb|CAN66666.1| hypothetical protein VITISV_031726 [Vitis vinifera]
          Length = 143

 Score = 53.1 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 10/103 (9%), Positives = 28/103 (27%), Gaps = 3/103 (2%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
                R +L        +    +Q       +          +  +  +       G   
Sbjct: 43  TYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPPAEFAKQQNIQ--NVHSGKKGGDLG 100

Query: 236 YLLESDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAICDKRD 277
           +     +   FQ++   +    T+ P+ +  G   I    +++
Sbjct: 101 WFPRGKMAGPFQDVAFSTVIGATSAPFKSTHGYHIILCEGRKN 143


>gi|289672777|ref|ZP_06493667.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. syringae FF5]
          Length = 79

 Score = 53.1 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 6/75 (8%), Positives = 20/75 (26%), Gaps = 1/75 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
            +  +  +    +        +K +S       G    +    +      ++ K      
Sbjct: 1   AEEAEQLKLRIAKGEAFDVLAKKHSSCPSGKRGGDLGEVRPGQMVGAIDQVIFKKPLRVV 60

Query: 259 -NPYVTQKGVEYIAI 272
             P  ++ G   + +
Sbjct: 61  HGPIKSKFGYHLVQV 75


>gi|19074283|ref|NP_585789.1| PEPTIDYL PROLYL CIS TRANS ISOMERASE (NIMA-INTERACTING)
           [Encephalitozoon cuniculi GB-M1]
 gi|19068925|emb|CAD25393.1| PEPTIDYL PROLYL CIS TRANS ISOMERASE (NIMA-INTERACTING)
           [Encephalitozoon cuniculi GB-M1]
          Length = 150

 Score = 53.1 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/139 (9%), Positives = 37/139 (26%), Gaps = 2/139 (1%)

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA-NKQKMKNITVREYLIRTVLFSIPDNKLQ 193
              + I+    +     F         E       ++ +I ++    R  +    D    
Sbjct: 10  HPEMWIKLKDKETGSPYFYNTETAERTEKRPNEGFRLYHILIKHEKSRKPVDMSIDEAFS 69

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS 253
               + + ++     +           K +        G   ++  +++  +F+      
Sbjct: 70  RIKAIHEDLRAKAGDKNFRELFKEAAIKHSQCSSAKRGGDLGFVCGNEMMKEFEKPAFSL 129

Query: 254 -QNNTTNPYVTQKGVEYIA 271
            +   + P  T  G   I 
Sbjct: 130 GRGEMSGPVSTPSGFHIIY 148


>gi|315224705|ref|ZP_07866528.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
           ochracea F0287]
 gi|314945333|gb|EFS97359.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
           ochracea F0287]
          Length = 705

 Score = 53.1 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/256 (10%), Positives = 63/256 (24%), Gaps = 17/256 (6%)

Query: 50  VITDGDISKRIALLKLQKINGELEKIA------------VQELIVETLKKQEIEKSGITF 97
            +TD +I   I   + Q        I             ++      LK  + E    + 
Sbjct: 212 KVTDSEIQDYIKKHEKQFKQEAYRNIQYIVVSEKPSQTDIETEKESLLKLLQPEVVFNSK 271

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
            +           +N     +  S         +    +     +++   V   F     
Sbjct: 272 TNKNDTIAGFAKTKNIKDFVDRHSDVPYDSTFVNKDNLRSSYADTLFNLPVGKVFGPYQE 331

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
           +  +++     K     V+   I                  ++    AEE   +      
Sbjct: 332 DGSLKLSRMIAKQPGGAVKASHILIAYAGSQAATPNTTRTKEEAKAKAEELLAQAKVAGA 391

Query: 218 KLEKFASKIHDVSI-----GKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAI 272
              + A +  +        G   +  +  +   F+     +   T     T  G   + +
Sbjct: 392 DFAQLARENSEEPGAVYSAGDLGFFSKGAMVKPFEEFAFNNAVGTIGLVETDFGFHVVKV 451

Query: 273 CDKRDLGGEIALKAYL 288
            DK +      +   +
Sbjct: 452 TDKAEAVNIATISRKV 467


>gi|210622794|ref|ZP_03293348.1| hypothetical protein CLOHIR_01296 [Clostridium hiranonis DSM 13275]
 gi|210154050|gb|EEA85056.1| hypothetical protein CLOHIR_01296 [Clostridium hiranonis DSM 13275]
          Length = 144

 Score = 53.1 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/126 (12%), Positives = 44/126 (34%), Gaps = 5/126 (3%)

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNL 249
            + +  ++K  ++ ++            +K++         G   Y  +      F + +
Sbjct: 22  DEKKEEIKKTAEEVQKRAASGEDFAALAKKYSDDKKTGEKGGDLGYFTKDAKDALFTREV 81

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
            K  + + +    T  G E + I D +    EI        +     +++   ++V++L 
Sbjct: 82  FKLKKGDVSKLIATNNGYEIVKINDIK---SEIKELDKCKEEIKKKILDEKYIKHVEQLV 138

Query: 310 SNAIIH 315
             A + 
Sbjct: 139 EKAEVK 144


>gi|83310913|ref|YP_421177.1| parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magneticum AMB-1]
 gi|82945754|dbj|BAE50618.1| Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magneticum AMB-1]
          Length = 623

 Score = 52.8 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/190 (7%), Positives = 43/190 (22%), Gaps = 17/190 (8%)

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
                    + F            +  +D        E  +    ++             
Sbjct: 213 LEAYYKDNVSRFMAPEFRALTVLLLRPSDVAGGIDIDEEMVRDAYRQRIEEFSTPERRAV 272

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
                 ++    +           +            +       +  I     + ++DL
Sbjct: 273 SQIVFDESSAAAKAT---------DLVTGGKDLATIAKAL-----NSEIIDLGVIEKNDL 318

Query: 243 HPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE 301
                + + K S   T+ P  T  G   + +   +           + AQ      ++  
Sbjct: 319 PEGLAEAVFKLSSGATSQPVKTALGWHVVKVSQIQPGR--TRSFDEVKAQLEQDMRKEKA 376

Query: 302 AEYVKKLRSN 311
            + + +L + 
Sbjct: 377 TDGLSELANR 386


>gi|262370474|ref|ZP_06063800.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter johnsonii SH046]
 gi|262314816|gb|EEY95857.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter johnsonii SH046]
          Length = 621

 Score = 52.8 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/306 (11%), Positives = 88/306 (28%), Gaps = 23/306 (7%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
                  +  ++        L    +V I  Y S      ++ ++NG+ I++ ++    A
Sbjct: 1   MESFRKVIKGWLGKALLILFLTPLALVGIEGYFSSGSKDAVK-SVNGQDISEKELETLTA 59

Query: 62  LLKLQ-----------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQ 108
             K Q                ++  A+ +LI  TL  Q+ EK GI+     +        
Sbjct: 60  SFKEQFLAYANGDETLLNQSFIKDKAMDQLIANTLLLQQAEKLGISLSDTQIEQMIAQQP 119

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
             +  G  +E   S   +     +        Q     ++++ F+      +++I     
Sbjct: 120 SFQENGKFSETRYSSYLQSVGMSSDALVANLRQDHALKMMRSTFVDYALVSKLDIQQ-IA 178

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
            ++            L     N   +   ++   K       ++          A     
Sbjct: 179 NLQTEQRTVQFANVNLDEYKKNVKVSAQEIENYYKQHPAMFKQVASVDVDYVLLAPANVP 238

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
            +      + +++L   +   ++  ++N             +   D R           +
Sbjct: 239 AAASP---VTDAELQQAYTQFVEAQKDNVAPLVK-----HILITTDARTDAEAKKRAEEV 290

Query: 289 SAQNTP 294
            A+   
Sbjct: 291 VAKIKA 296



 Score = 52.4 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 59/231 (25%), Gaps = 4/231 (1%)

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           L+ +   +Q              N    ++ +N  +SA++  ++  +             
Sbjct: 168 LVSKLDIQQIANLQTEQRTVQFANVNLDEYKKNVKVSAQEIENYYKQHPAMFKQVASVDV 227

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
              +              + E++    +           L++ +L +             
Sbjct: 228 DYVLLAPANVPAAASPVTDAELQQAYTQFVEAQKDNVAPLVKHILITTDARTDAEAKKRA 287

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT 258
           + +    ++         +  +        + G      +      F   +        +
Sbjct: 288 EEVVAKIKAGTSFAAAAAQYSE--DTASKANGGALAVYNKGTFGDAFDQAVASLKSGQVS 345

Query: 259 NPYVTQKGVEYIAICD-KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
            P  T+ G   I        L      KA L+A+    K     ++ V  L
Sbjct: 346 APVKTEFGYHVIETDAPAVKLPSFENEKARLTAEVQKNKTANAFSDTVNSL 396


>gi|154274143|ref|XP_001537923.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Ajellomyces capsulatus
           NAm1]
 gi|150415531|gb|EDN10884.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Ajellomyces capsulatus
           NAm1]
          Length = 181

 Score = 52.8 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 11/168 (6%), Positives = 34/168 (20%), Gaps = 1/168 (0%)

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
                         + ++   +         + L +          D     G+    + 
Sbjct: 11  EVRHSNSKNLPYYFNPATKESRWEPPTGTDTEKLKVYMAEHHSGPADRYASGGSGGGSVE 70

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
              +    +       R   +   +     +  ++         R       +     + 
Sbjct: 71  GKIRASHLLIKHRESRRPSSWRESEITRSKEEALEILRGHERRIRAGEATLGDIAMSESD 130

Query: 225 KIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                  G   +    ++  +F+           +    T  GV  I 
Sbjct: 131 CSSARKKGDLGFFGRGEMQTEFEGAAFALQPGQVSGIVETASGVHLIE 178


>gi|126138552|ref|XP_001385799.1| peptidylprolyl cis/trans isomerase [Scheffersomyces stipitis CBS
           6054]
 gi|126093077|gb|ABN67770.1| peptidylprolyl cis/trans isomerase [Scheffersomyces stipitis CBS
           6054]
          Length = 176

 Score = 52.8 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/123 (9%), Positives = 33/123 (26%), Gaps = 1/123 (0%)

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
             +        +      +    +       R   +  PD     +    +++K  +   
Sbjct: 51  EKYRANGHKPVIREDGKVRVSHLLIKHNQSRRPRSWKSPDGITTTRDEAIQKLKQLQAKI 110

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVE 268
           L   K     E  +      + G   +  +  + P F+      +    ++   T  G+ 
Sbjct: 111 LNGEKLSELAESESDDSSHSTGGDLGFFGKGQMQPAFEEAAFGLNVGEISDIVETDSGLH 170

Query: 269 YIA 271
            + 
Sbjct: 171 LLE 173


>gi|255084659|ref|XP_002508904.1| predicted protein [Micromonas sp. RCC299]
 gi|226524181|gb|ACO70162.1| predicted protein [Micromonas sp. RCC299]
          Length = 116

 Score = 52.8 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 7/76 (9%), Positives = 18/76 (23%), Gaps = 1/76 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             + +     E+         +   K +        G   +     +   F++       
Sbjct: 37  AALDELEAYREQIESGAVTFADLAAKVSDCSSAKHGGDLGFFGPGKMQKAFEDGAFALQV 96

Query: 255 NNTTNPYVTQKGVEYI 270
              +    +  GV  I
Sbjct: 97  GEMSGVIDSDSGVHII 112


>gi|312868729|ref|ZP_07728921.1| putative foldase protein PrsA [Lactobacillus oris PB013-T2-3]
 gi|311095715|gb|EFQ53967.1| putative foldase protein PrsA [Lactobacillus oris PB013-T2-3]
          Length = 318

 Score = 52.8 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/287 (11%), Positives = 81/287 (28%), Gaps = 26/287 (9%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           + +  ++ +     ++     A  ++   T +G  IT  +    +             K 
Sbjct: 1   MKSKKLIAVIAGAALM-LPLAACGNKAVATTSGGKITQSEYYSSMKATSN-------GKQ 52

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +Q++I++ + ++E  K       N                   + S        +   +
Sbjct: 53  VLQQMILDKVLEKEYGKQVSDKQVN----------AQYNSYKSQYGSQFSSFLQQNGMTE 102

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           + L  Q     +++            +I A  +K +               +  +K   Q
Sbjct: 103 KSLKQQLRSNLLLEAAVRDYSHITNKQINAQWKKYQPKVQTAE-------ILVGSKNDAQ 155

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN 255
             + +    +++ +       +K    ++K +   +        S      +   K    
Sbjct: 156 DIIDQLNNSSDKYKTFKKLAKSKSTDTSNKDNGGRVPAFDNTDNSLDSAYKEAAFKLKTG 215

Query: 256 NTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE 301
             T  P  T  G + I + +    G +    A L  Q     +    
Sbjct: 216 EYTTTPVKTDDGYQVIYMIEHPAKGKKSQHIADLRTQIVQENMNNRT 262


>gi|294946367|ref|XP_002785041.1| peptidyl-prolyl cis-trans isomerase ESS1, putative [Perkinsus
           marinus ATCC 50983]
 gi|239898433|gb|EER16837.1| peptidyl-prolyl cis-trans isomerase ESS1, putative [Perkinsus
           marinus ATCC 50983]
          Length = 110

 Score = 52.8 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 8/85 (9%), Positives = 27/85 (31%), Gaps = 1/85 (1%)

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
             +  + +   +++     E+ +          +  +      + G   +    ++   F
Sbjct: 26  CHEISISHDEALKEIKDMIEKLKADRSIFSEMAKARSDCGSYKNGGDLGFFDRGEMQRPF 85

Query: 247 QNLLKK-SQNNTTNPYVTQKGVEYI 270
           +++         + P  T  GV +I
Sbjct: 86  EDVAFSLKIGELSGPVETDSGVSFI 110


>gi|325122070|gb|ADY81593.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 582

 Score = 52.8 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/305 (10%), Positives = 82/305 (26%), Gaps = 23/305 (7%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
                T +  ++  +     L    +V I  Y +    + +  T+NG+ I+  D+     
Sbjct: 1   MESFRTVIKGWLGKVLLILFLTPLALVGIEGYFNRGNKADVAKTVNGQEISKKDLETLTQ 60

Query: 62  LLKLQK-----------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQ 108
             K Q                ++  A+  L+   L  Q+ EK GI+     +        
Sbjct: 61  SYKEQYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQQP 120

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
             +  G  ++       +     +        Q     ++ + F       ++++     
Sbjct: 121 SLQENGQFSQKLYENYLRSIGMTSQGLIASLRQDHALKMLTSTFADYSLVSKVDL-MQIA 179

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
            ++      +L    L +       +           +    +           +  +  
Sbjct: 180 NLQTEQRTLHLASIKLDAYKTGLTASNQEATDYYNKHQNEFKQQASVDVDYVVLSPSMMA 239

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
                     E++L   +   ++  + +             +   D RD      L   +
Sbjct: 240 KPA----PATEAELQQAYAKFVETQKKDAKRTVK-----HILITTDARDDAAAQKLAKEV 290

Query: 289 SAQNT 293
            A+  
Sbjct: 291 YAKIQ 295



 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 55/194 (28%), Gaps = 4/194 (2%)

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
                  D      N FKQ  ++   +  +  +         E E+          T ++
Sbjct: 204 ASNQEATDYYNKHQNEFKQQASVDVDYVVLSPSMMAKPAPATEAELQQ-AYAKFVETQKK 262

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY- 236
              RTV   +     ++    QK  K+                +F+      + G     
Sbjct: 263 DAKRTVKHILITTDARDDAAAQKLAKEVYAKIQGGLSFAQAASQFSEDPSSKAKGGLVEA 322

Query: 237 LLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAIC-DKRDLGGEIALKAYLSAQNTP 294
                    F + +L       + P  TQ G   I        +    A KA L+A+   
Sbjct: 323 YAPGVFSDAFDKTVLSLKNGQVSQPVKTQYGYHIIEAETQANQIPSFEAEKARLTAEVEK 382

Query: 295 TKIEKHEAEYVKKL 308
            K+    ++ V  L
Sbjct: 383 NKVATVYSDAVNSL 396


>gi|325105922|ref|YP_004275576.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter saltans
           DSM 12145]
 gi|324974770|gb|ADY53754.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter saltans
           DSM 12145]
          Length = 699

 Score = 52.8 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/134 (10%), Positives = 37/134 (27%), Gaps = 5/134 (3%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           +     +           + +    +    +        ++F +     S G        
Sbjct: 347 KARHILLNPATEGGMDKAKSKADSIKNLIQKGASFAELAKEFGTDGSKDSGGDLGTFARG 406

Query: 241 DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH 300
            + P+F++ +            TQ GV  I I  +      + +          ++ E+ 
Sbjct: 407 SMVPKFEDAVFNGPVGQVFTLETQFGVHVIEIQKQIGSSKVVKVAVVDKQIAPSSQTEQA 466

Query: 301 EAEYVKKLRSNAII 314
             +     ++ A I
Sbjct: 467 AYQ-----KAQAFI 475


>gi|195453617|ref|XP_002073865.1| GK12925 [Drosophila willistoni]
 gi|194169950|gb|EDW84851.1| GK12925 [Drosophila willistoni]
          Length = 129

 Score = 52.8 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             Q +I +A E      K       ++        G   + +   +   FQ+       +
Sbjct: 44  EKQGKITEAMEKLKAGQKFPEVAAAYSED-KARQGGDLGWQIRGAMVGPFQDAAFALPIS 102

Query: 257 TT-------NPYVTQKGVEYIAICDKR 276
           T         P  T+ G   I +  K+
Sbjct: 103 TVNNPVYTDPPIKTKFGYHIIMVEGKK 129


>gi|68491571|ref|XP_710415.1| hypothetical protein CaO19.12663 [Candida albicans SC5314]
 gi|68491594|ref|XP_710404.1| hypothetical protein CaO19.5196 [Candida albicans SC5314]
 gi|66361212|pdb|1YW5|A Chain A, Peptidyl-Prolyl Isomerase Ess1 From Candida Albicans
 gi|12655856|gb|AAK00626.1| peptidyl prolyl cis/trans isomerase [Candida albicans]
 gi|46431598|gb|EAK91142.1| hypothetical protein CaO19.5196 [Candida albicans SC5314]
 gi|46431610|gb|EAK91153.1| hypothetical protein CaO19.12663 [Candida albicans SC5314]
 gi|238879094|gb|EEQ42732.1| peptidyl-prolyl cis-trans isomerase 1 [Candida albicans WO-1]
          Length = 177

 Score = 52.8 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/155 (9%), Positives = 36/155 (23%), Gaps = 2/155 (1%)

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
               +   Q   ++ +           +     F        +      +    +     
Sbjct: 20  HNKEYFLNQSTNESSWDPPYGTDKEVLNAYIAKFKNNGYKPLVNEDGQVRVSHLLIKNNQ 79

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKIHDVSIGKAQYL 237
             +   +  PD   + +    + +K   E  L    K        +        G   + 
Sbjct: 80  SRKPKSWKSPDGISRTRDESIQILKKHLERILSGEVKLSELANTESDCSSHDRGGDLGFF 139

Query: 238 LESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIA 271
            +  + P F+           +N   T  GV  + 
Sbjct: 140 SKGQMQPPFEEAAFNLHVGEVSNIIETNSGVHILQ 174


>gi|170100132|ref|XP_001881284.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164643963|gb|EDR08214.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 98

 Score = 52.8 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 8/86 (9%), Positives = 26/86 (30%), Gaps = 7/86 (8%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               +  +A +            ++++      + G   +++   +   FQ++      +
Sbjct: 14  EKHSKATEALQKIQEGQAFNKVAQEYSED-KAKAGGSLGWMVRGSMVGAFQDVAFALTPS 72

Query: 257 ------TTNPYVTQKGVEYIAICDKR 276
                  +    T  G   I +  +R
Sbjct: 73  TVDKPLVSGLVKTNFGYHIIMVEGRR 98


>gi|70726122|ref|YP_253036.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus haemolyticus
           JCSC1435]
 gi|68446846|dbj|BAE04430.1| peptidyl-prolyl cis/trans isomerase [Staphylococcus haemolyticus
           JCSC1435]
          Length = 324

 Score = 52.8 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/265 (11%), Positives = 70/265 (26%), Gaps = 9/265 (3%)

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
                 L   K      K  + ++  E +       +     ++           +  + 
Sbjct: 27  DSESNTLISSKAGDVKVKDVMNKIGDEQIASTSFSIALNKILADKYKDKVDTKDIDDEIK 86

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            E        Q       +            +   +  +    ++++   + K       
Sbjct: 87  KEQKQYGGKDQFESMLKQQGMSLDDYKEQKKL-AAYQKQLLADKVKVSDKELKENTKKAS 145

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQ 235
             LI+    S     L ++   +K  K  +E      K     +K +         G   
Sbjct: 146 HILIKVKSSSSDKEGLSDKKAKEKAEKIQKEVEKNPDKFGEIAKKESMDSSSAKKDGSLG 205

Query: 236 YLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP 294
           Y+++  +  +F+    K  +   ++   T  G   I              K+ L A+   
Sbjct: 206 YVVKGQMVSKFEKALFKLKEGQVSDVVKTDYGYHVIKAD---KESDFDKQKSKLKAKLIE 262

Query: 295 TKIE---KHEAEYVKKLRSNAIIHY 316
            K++   K      K L     + Y
Sbjct: 263 QKVQKDPKILTNAYKDLLKEYDVDY 287


>gi|284055341|pdb|2KGJ|A Chain A, Solution Structure Of Parvulin Domain Of Ppid From E.Coli
          Length = 102

 Score = 52.8 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 7/73 (9%), Positives = 26/73 (35%), Gaps = 1/73 (1%)

Query: 207 ESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQK 265
           +   +        ++ ++ I    + G   +L ++ +  + +N   K +   +    +  
Sbjct: 24  DELNKGGDFAALAKEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSV 83

Query: 266 GVEYIAICDKRDL 278
           G   + + D +  
Sbjct: 84  GFLIVRLDDIQAA 96


>gi|3004661|gb|AAC28408.1| dodo [Drosophila melanogaster]
          Length = 166

 Score = 52.8 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 9/155 (5%), Positives = 31/155 (20%), Gaps = 1/155 (0%)

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            + +     +      +   Y                        + P     +  +   
Sbjct: 8   PDGWEKRTSRSTGMSYYLNMYTKESQWDQPTEPAKKTGGGSAGGGDAPDEVHCLHLLVKH 67

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
           +   R   +   +     +           +   +          ++        G    
Sbjct: 68  KGSRRPSSWREANITRTKEEAQLLLEVYRNKIVQQEATFDELARSYSDCSSAKRGGDLGK 127

Query: 237 LLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                +   F++   K + N  +    +  G+  I
Sbjct: 128 FGRGQMQAAFEDAAFKLNVNQLSGIVDSDSGLHII 162


>gi|260550156|ref|ZP_05824370.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. RUH2624]
 gi|260406911|gb|EEX00390.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. RUH2624]
          Length = 621

 Score = 52.8 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/319 (10%), Positives = 84/319 (26%), Gaps = 23/319 (7%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
                T +  ++  +     L    +V I  Y +    + +  T+NG+ I+  D+     
Sbjct: 1   MESFRTVIKGWLGKVLLILFLTPLALVGINGYFNRGNKADVAKTVNGQDISKKDLETLTQ 60

Query: 62  LLKLQK-----------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQ 108
             K Q                ++  A+  L+   L  Q+ EK GI+     +        
Sbjct: 61  RYKEQYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQQP 120

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
             +  G  ++       +     +        Q     ++ + F       ++++     
Sbjct: 121 SLQENGQFSQKLYENYLRSIGMTSQALIASLRQDHALKMLTSTFSDYALVSKVDV-MQIA 179

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
            ++      +L    L +       +           +    +           +  +  
Sbjct: 180 NLQTEQRTLHLASIKLDTYKTGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSLMA 239

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
                     +++L   +   ++  Q N             +   D RD      L   +
Sbjct: 240 KPA----PATDAELKQAYAKFVETQQKNAKRVVK-----HILITTDARDDAAAQKLANEV 290

Query: 289 SAQNTPTKIEKHEAEYVKK 307
            A+          A    +
Sbjct: 291 YAKIQGGLSFAQAAAQFSE 309



 Score = 49.3 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 39/144 (27%), Gaps = 3/144 (2%)

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI- 226
                 T ++   R V   +     ++    QK   +                +F+    
Sbjct: 253 YAKFVETQQKNAKRVVKHILITTDARDDAAAQKLANEVYAKIQGGLSFAQAAAQFSEDPT 312

Query: 227 HDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICD-KRDLGGEIAL 284
                G  +          F + +        + P  TQ G   I        +    A 
Sbjct: 313 SKTKGGLVEAYAPGVFSDAFDKTVSSLKNGQVSQPVKTQYGYHIIEAETPANQIPSFEAE 372

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKL 308
           KA L+A+    K+    ++ V  L
Sbjct: 373 KARLTAEVEKNKVATVYSDTVNSL 396


>gi|163753204|ref|ZP_02160328.1| peptidyl-prolyl cis-trans isomerase [Kordia algicida OT-1]
 gi|161326936|gb|EDP98261.1| peptidyl-prolyl cis-trans isomerase [Kordia algicida OT-1]
          Length = 701

 Score = 52.8 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 12/116 (10%), Positives = 35/116 (30%), Gaps = 8/116 (6%)

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL-ESDLHPQFQNLLKK 252
            +   +         +    K  +  ++ +        G   +    + L P F+  + +
Sbjct: 364 KEEAKKTADSILTIVKRNKSKFADIAKEISDDTSKDKGGDLGWFTGATALTPTFKEFVFE 423

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
           ++        +  G   I I D+++       +  +    T  K  +   + +  L
Sbjct: 424 NETGDMGVVESPFGFHVIEIEDQKN-------EQKVVKLATINKQVEVTEQTLNDL 472



 Score = 37.7 bits (85), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 39/125 (31%), Gaps = 4/125 (3%)

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL 250
           + + +  + K      ++   L     K E+ A+ +   +                    
Sbjct: 574 RNKKKAEMIKANNAGSKTLAELASAAGKAEQQATSLSMAAPIIPG---AGAEKKVVGAAF 630

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
              +  T+     + GV  I + DK +   +      +       +  K  +  V+ L+S
Sbjct: 631 ALDKGATSGLIEGRTGVFMIQVVDKVEAPAKDTYLTEM-NTLRNQRATKATSSVVEALKS 689

Query: 311 NAIIH 315
           ++ I 
Sbjct: 690 SSEIE 694


>gi|119480665|ref|XP_001260361.1| peptidyl-prolyl cis/trans isomerase [Neosartorya fischeri NRRL 181]
 gi|119408515|gb|EAW18464.1| peptidyl-prolyl cis/trans isomerase [Neosartorya fischeri NRRL 181]
          Length = 178

 Score = 52.8 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 10/165 (6%), Positives = 31/165 (18%), Gaps = 2/165 (1%)

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL-EMEIPANK 167
                  S      F                 + +   +               +     
Sbjct: 13  WEVRHSNSKNLPYYFNPSTKESRWEPPTGTDTELLKVYMANYHSAPAVRPDGTGQGEGKI 72

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
           +    +       R   +   +     +  ++      +  R       +     +    
Sbjct: 73  RCSHLLIKHRDSRRPSSWREAEITRSKEEAIEILRGHEQRIRSGGVSLGDIAVSESDCSS 132

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
               G   +    ++  +F++          +    T  GV  I 
Sbjct: 133 ARKKGDLGFFGRGEMQKEFEDAAFALQPGQVSGIVETASGVHLIE 177


>gi|262376134|ref|ZP_06069364.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter lwoffii SH145]
 gi|262308735|gb|EEY89868.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter lwoffii SH145]
          Length = 621

 Score = 52.8 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 61/232 (26%), Gaps = 6/232 (2%)

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           L+     +Q  +        +  +     + ++  ++  D +++ +K             
Sbjct: 168 LVSPVEMQQIADLQTEQRHIHISSINLDSYKKDVKVTDADIAAYYEKHKTLFKQPTSVDV 227

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
              +          L   + E++              +  ++ +L +      ++    +
Sbjct: 228 DYVVLKPSDIQVQSLAVTDAELQEAYTAFVATQKQAVKPDVKHILITA---DSRSDAEAK 284

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNT 257
           K   +                +++         G      E      F   +        
Sbjct: 285 KLATEIAAKIKAGTTFAQAAAQYSEDPESKSKGGALAVYEEGVFGTAFDQTVSSLKSGQV 344

Query: 258 TNPYVTQKGVEYIAICDKR-DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
           + P  T  G   I++      +    + KA LS +    K     ++ V  L
Sbjct: 345 SAPVKTDYGYHIISVQTPDVAVPSFESQKARLSEEALAAKKSNAFSDTVNTL 396



 Score = 47.0 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/325 (10%), Positives = 81/325 (24%), Gaps = 22/325 (6%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTT-INGEVITDGDISKRI 60
                  +  ++  +     L    +V I  Y S   S       +NG  I+  ++    
Sbjct: 1   MEAFRKVIKGWLGKVLLVLFLTPLALVGIEGYFSSGNSD--AAKSVNGTEISQKELESLT 58

Query: 61  ALLKLQK-----------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
              K Q                +++ A+  L+  TL  Q+ E+ GI+     +     Q 
Sbjct: 59  KSFKEQYLSYANGDETLLNQSFIDQKAMDTLVARTLLLQQAEELGISLSDQQIEQMIAQQ 118

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
                      + + +         +       +   + K+  +    +  ++ P     
Sbjct: 119 PTFQQDGKFSNALYENYLKSIGMTNRA------LIESLRKDHALKMLSSTFLDYPLVSPV 172

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
                      +  +     N    +  V+    D      +      +          +
Sbjct: 173 EMQQIADLQTEQRHIHISSINLDSYKKDVKVTDADIAAYYEKHKTLFKQPTSVDVDYVVL 232

Query: 230 SIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS 289
                Q    +    + Q                      +   D R       L   ++
Sbjct: 233 KPSDIQVQSLAVTDAELQEAYTAFVATQKQAVK-PDVKHILITADSRSDAEAKKLATEIA 291

Query: 290 AQNTP-TKIEKHEAEYVKKLRSNAI 313
           A+    T   +  A+Y +   S + 
Sbjct: 292 AKIKAGTTFAQAAAQYSEDPESKSK 316


>gi|330808733|ref|YP_004353195.1| peptidylprolyl isomerase (peptidyl-prolyl cis-trans isomerase C)
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327376841|gb|AEA68191.1| peptidylprolyl isomerase (peptidyl-prolyl cis-trans isomerase C)
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 91

 Score = 52.8 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 5/77 (6%), Positives = 22/77 (28%), Gaps = 1/77 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
              +  +  ++   +        +K+++       G    +    +      ++ K    
Sbjct: 11  KTAEEAEQLKQRIAKGEAFDVLAKKYSTCPSGKRGGDLGEVRPGQMVGVIDAVIFKKPLR 70

Query: 257 TT-NPYVTQKGVEYIAI 272
               P  ++ G   + +
Sbjct: 71  VVHGPIKSKFGYHLVQV 87


>gi|302508515|ref|XP_003016218.1| hypothetical protein ARB_05616 [Arthroderma benhamiae CBS 112371]
 gi|291179787|gb|EFE35573.1| hypothetical protein ARB_05616 [Arthroderma benhamiae CBS 112371]
          Length = 150

 Score = 52.8 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 6/85 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               + ++A E      K  +   +F+        G   + +   L   F+    + + +
Sbjct: 67  EKHSKKEEALEKLRAGAKFDDVAREFSED-KARQGGSLGWKVRGSLDAAFEKAAYELEPS 125

Query: 257 TTN-P----YVTQKGVEYIAICDKR 276
           TT  P      T  G   I +  ++
Sbjct: 126 TTGNPKYVEVKTGFGYHIIMVEGRK 150


>gi|224543042|ref|ZP_03683581.1| hypothetical protein CATMIT_02242 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524067|gb|EEF93172.1| hypothetical protein CATMIT_02242 [Catenibacterium mitsuokai DSM
           15897]
          Length = 321

 Score = 52.8 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/268 (7%), Positives = 71/268 (26%), Gaps = 16/268 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K      + +   ++             +  + +   +   D+   +  +         
Sbjct: 1   MKAKKIAALCLASVLLLSGCGGKTVDGKSVVASTSEGNVYADDVYDTL--ISTSSGKSAA 58

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            +  + +LI +        K   +   +++   +           +  S         ++
Sbjct: 59  FQYVLDQLINKQYPITSDMKDNASDMLDSIKNSYKSKYGEDSYEKQFKSDLKSAGYTSES 118

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            +K+ L     + ++VK+     Y  +  +        K  T R   +  +  S P N  
Sbjct: 119 EYKKKLIYSLQYAELVKHYVKTHYDTVFED------YYKVATPRMISMIKISVSDPSNPT 172

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL------HPQF 246
            ++    K +++  +               ++       G    +  +            
Sbjct: 173 DSEKEKLKEVQELLKDGKSFGDVAKDYSDDSTTKSAK--GSLGVVDTTSNLTNTYGSTIN 230

Query: 247 QNLLKKSQNNTTNPYVTQKGVEYIAICD 274
           +     ++  T++      G   +    
Sbjct: 231 EAAFSLTEGQTSDVLTGNDGYYILKCTS 258


>gi|302338344|ref|YP_003803550.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635529|gb|ADK80956.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 511

 Score = 52.8 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/339 (10%), Positives = 85/339 (25%), Gaps = 45/339 (13%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVI----------TDGDISKRIAL 62
             +     +++ F   P +S+      S +  + NGE I              ++KR   
Sbjct: 31  FSVFILVLIVVTFVGAPAISHFGSQRGSIVFGSWNGEPIEYRPDNYLSRQRDMVAKRYQA 90

Query: 63  LKLQKING--------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
           +  Q            ++   A +  ++ +   +E +KSG+      V+     +     
Sbjct: 91  MFQQSQGQDNIDWQLFQVWNGAFELTVIHSAIMEEAQKSGLQVSDERVDRALTYYEGYWE 150

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
                  ++ +         + Y     I    V + F     + E     +    +   
Sbjct: 151 NGKFSPEAYRNTSSSEKFSVRNYYHESLIHQQWVSDVFSTHSSSAEKAFLLSLASPERNF 210

Query: 175 VREYLIRTVLFSIP----------------DNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
                      +                   +++  +   +      ++ R         
Sbjct: 211 RFVNWDLNSYPAEKVAEYGRQTGDLFAEGSFSRISLKDDKKSAEAVLKQLREETSTFEEL 270

Query: 219 LEKFASKIHDVSIGKAQYLLESDL------HPQFQNLLKKSQNNTTNPYVTQKGVEYIAI 272
               ++ I+    G+  Y++   L            +   +    +    T  G      
Sbjct: 271 ATAHSTDIYADKGGEMGYVMRYALQSDISNDKDLDEVFSLAPGEASGLVETPYGWAIYRS 330

Query: 273 CD-KRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
               RD     +  +    S      +      +Y   L
Sbjct: 331 NGPIRDADFTNDETIDKVRSYMLVNDRG--IVEDYFLDL 367


>gi|126662464|ref|ZP_01733463.1| peptidyl-prolyl cis-trans isomerase [Flavobacteria bacterium BAL38]
 gi|126625843|gb|EAZ96532.1| peptidyl-prolyl cis-trans isomerase [Flavobacteria bacterium BAL38]
          Length = 685

 Score = 52.8 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/250 (11%), Positives = 65/250 (26%), Gaps = 9/250 (3%)

Query: 45  TINGEVI--TDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
           T+N + +  +D +I   +     +  +     I    +  +  K+ E        D    
Sbjct: 205 TVNDDEVKVSDSEIIDFMKKSPKKYKSDNTSSIEFVLVENKPSKEDEQAMLSSIGDVKVK 264

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
               V    N G      S                   + ++   V   +     N    
Sbjct: 265 FDSVV----NVGEFVNANSDIKFDSTYVTKKDLPLDYQEQLFNLPVGGVYGPYVFNGHQC 320

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL--PKDCNKLE 220
           I     K  N + +   I       P +         + + +   ++ +           
Sbjct: 321 ISRMISKKANASAKASHILLAYKGAPQSSATRTKEEAQALANNLLAQAKANPENFAVLAM 380

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
             +       + G+   +    + PQF + +  +   +     T  G   I + DK +  
Sbjct: 381 ANSDDPGSKNNGGEYDNITPGQMVPQFNDFVFNNVIGSIGVVETDYGFHVIKVMDKYNSV 440

Query: 280 GEIALKAYLS 289
               +   + 
Sbjct: 441 LMGTVAQKIQ 450


>gi|78222137|ref|YP_383884.1| hypothetical protein Gmet_0917 [Geobacter metallireducens GS-15]
 gi|78193392|gb|ABB31159.1| conserved hypothetical protein [Geobacter metallireducens GS-15]
          Length = 549

 Score = 52.8 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 38/122 (31%), Gaps = 2/122 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
            + K+  +  +++L          +        + G    +  S    +    L      
Sbjct: 421 ELAKKKAEEAQAKLAKGDTAGLKLQETGSFAFDAKGNVPVIGTSPELMEAAFTLTDKAPA 480

Query: 257 TTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              P           + ++ +       A K  +  +  P K E+   +++K+LR+ A I
Sbjct: 481 PQAPVKIGNRWVAFRLKERTELNAAAFPAEKEKIKQELLPKKQEEELQKWLKELRAKAKI 540

Query: 315 HY 316
             
Sbjct: 541 EI 542



 Score = 40.8 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/245 (8%), Positives = 66/245 (26%), Gaps = 28/245 (11%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFC---IVPIVSYKSWAMSSRIRTTINGEVITDGDIS 57
           M   +       +  +    +++ F     +           S     ++   ++  +  
Sbjct: 22  MLGIMRKYKQSIVIKVVFGLIVLSFIGTIFLVWGKGDGGLTPSSYAVKVDRTKVSYEEFQ 81

Query: 58  KRIALLKLQ-------------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           +    L+               +    L+K A+  LI   L ++  +  G+      V  
Sbjct: 82  RTYYRLRDIYTQIYGPALTPEVEKQLNLKKQALDSLIDAALLRKAAKDMGVKVSEEEVQK 141

Query: 105 ---FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
                    +N    +  + + L    +    F+     + +     ++    K    + 
Sbjct: 142 AIAAIPAFQKNGAFDSAQYFAVLKANRLAPKEFEAGQKDELMVKKA-QDQIKAKVQVTDD 200

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
                         ++   R  L     +  + +G ++   ++  +   +   +    E+
Sbjct: 201 AARQLY--------KKRNDRLNLQFTSFSPEELKGEIKLSDQELTDFLAKNQNEFKTPEQ 252

Query: 222 FASKI 226
            +   
Sbjct: 253 ISVSY 257


>gi|21356303|ref|NP_651364.1| CG11858 [Drosophila melanogaster]
 gi|7301304|gb|AAF56433.1| CG11858 [Drosophila melanogaster]
 gi|17946706|gb|AAL49383.1| RH66629p [Drosophila melanogaster]
 gi|220958600|gb|ACL91843.1| CG11858-PA [synthetic construct]
          Length = 130

 Score = 52.8 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             Q +I +A E      K       ++        G   + +   +   FQ+       +
Sbjct: 45  EKQGKITEAMEKLKAGQKFPEVAAAYSED-KARQGGDLGWQIRGAMVGPFQDAAFALPIS 103

Query: 257 TT-------NPYVTQKGVEYIAICDKR 276
           T         P  T+ G   I +  K+
Sbjct: 104 TVNNPVYTDPPIKTKFGYHIIMVEGKK 130


>gi|319761381|ref|YP_004125318.1| hypothetical protein Alide_0662 [Alicycliphilus denitrificans BC]
 gi|317115942|gb|ADU98430.1| hypothetical protein Alide_0662 [Alicycliphilus denitrificans BC]
          Length = 293

 Score = 52.8 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/306 (9%), Positives = 81/306 (26%), Gaps = 45/306 (14%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTI-NGEVITDGDISKRIALLKLQKINGELEKIAVQE 79
           ++++   + + +  +    + +   + NGE IT+ D                     + +
Sbjct: 11  IVLLAGAMVLGAAFAQEAKNPVLARLGNGETITEKD---------------------LTQ 49

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
            +   +  + + ++     +        +     G S            +     K    
Sbjct: 50  YVGRRIDLKAVARNASGVTTVVQEMALARALALEGQSLG----------VPPRSEKGDTR 99

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
              I+   + +         + E  A     KN           L  +     +      
Sbjct: 100 FDDIYAHTIFSKISPACEAPKDEAAARDFYDKNPKAFTLPTAIRLSRVILPAAEKVDGEP 159

Query: 200 KRIKDAEESRLRLP---KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
                  + +       K  +   +        + G   +++ ++ +   + L   +Q +
Sbjct: 160 AGTWLMNQVQAIGAGRQKFEDAAHRAEQAYKLDAQGDLGWVMLNEENLILRALGDANQGD 219

Query: 257 TTNPYVTQKGVEYIAICDKRDLGG-------EIALKAYL---SAQNTPTKIEKHEAEYVK 306
              P      V    + +KR            +A K  +     Q      ++   +Y  
Sbjct: 220 IVGPVKDGDFVYLFQVAEKRPSQVVPWTEVSAVAAKRAVSYCREQARIDVQQRMFQKYGV 279

Query: 307 KLRSNA 312
           +L  NA
Sbjct: 280 QLDENA 285


>gi|325265262|ref|ZP_08131987.1| hypothetical protein HMPREF0240_04276 [Clostridium sp. D5]
 gi|324029441|gb|EGB90731.1| hypothetical protein HMPREF0240_04276 [Clostridium sp. D5]
          Length = 354

 Score = 52.8 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/331 (7%), Positives = 73/331 (22%), Gaps = 35/331 (10%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +  F K +       +F +  +        +  +   +  + I  G  +    + + Q  
Sbjct: 1   MGQFRKRVMIMAAAGLFAVSSLTGCGRSMNNDAVVAEVGEDKIALGVANFYARMQQAQYE 60

Query: 69  -------------------------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
                                        +   ++ L    L KQ      +    +   
Sbjct: 61  TYYAGMMGTTGEAMWAQEVEEDKDYEDTTKASILEALENMYLLKQHAADYKVELTDDDKK 120

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
                       +  +    +         F +   IQ+     +K     +  + E   
Sbjct: 121 AINKAAETFVEDNTLEDKEVVSGYEKYVKTFLELATIQTRMNAPMKEGVDEEVSDEEAAQ 180

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
            + +  + +    +    +           ++    K         L+     +     +
Sbjct: 181 KSMQYVLFSYNKTDADGNSE------AMTDDEKAALKETAQKFADDLKNSDKKDLEAAAS 234

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIA 283
               +V          S      +      +   T    +  G+    +        +  
Sbjct: 235 EAGLEVQTATFDSESTSPTADLVKAADALEEGGVTGIVESDNGIYVAKLTS----NLDRE 290

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                       + ++     V++ R +  I
Sbjct: 291 ATDAKKESIVEERKQEQYDSLVEQWRKDTEI 321


>gi|315657935|ref|ZP_07910809.1| peptidyl-prolyl cis-trans isomerase [Staphylococcus lugdunensis
           M23590]
 gi|315496971|gb|EFU85292.1| peptidyl-prolyl cis-trans isomerase [Staphylococcus lugdunensis
           M23590]
          Length = 322

 Score = 52.8 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/252 (11%), Positives = 63/252 (25%), Gaps = 13/252 (5%)

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
            ++ K    E I  T     + K       + V+   +                 +    
Sbjct: 44  ADVMKKIGNEQIANTSFSIMLNKILEDKYKDKVDTKDIDDEIKQEQKKYGGKDQFESTLK 103

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                      Q       K     K    + ++        +      LI+        
Sbjct: 104 QQGMSLDDYKQQKKLAAYQKQLLADKIKVSDKDVK-----DNSKKASHILIKVKSKDSDK 158

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQN 248
             L ++   +K  +  ++      K     +K +         G   Y+++  +  +F+ 
Sbjct: 159 EGLSDKKAKEKAEEIQKQVEKDPSKFGEIAKKESMDSSSAKKDGSLGYVIKGQIVDEFEK 218

Query: 249 L-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE---KHEAEY 304
                 +   +    T  G   I            + KA +  +    K++   K   + 
Sbjct: 219 ALFDLKEGKVSKVIKTDYGYHIIKAD---KESDFNSEKANIKEKMIEQKVQKNPKLLTDA 275

Query: 305 VKKLRSNAIIHY 316
            K L     + Y
Sbjct: 276 YKDLLDQYKVDY 287


>gi|159468868|ref|XP_001692596.1| peptidyl-prolyl cis-trans isomerase, parvulin-type [Chlamydomonas
           reinhardtii]
 gi|158278309|gb|EDP04074.1| peptidyl-prolyl cis-trans isomerase, parvulin-type [Chlamydomonas
           reinhardtii]
          Length = 248

 Score = 52.8 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 33/112 (29%), Gaps = 3/112 (2%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP 260
           + K+ EE             + ++       G+  +L      PQF+     +       
Sbjct: 58  KAKELEEKLAGGAAFEELAREHSTCGSAKKGGELGWLSRGTFFPQFEAAAFAAPVGGITR 117

Query: 261 YVTQKGVEYIAIC-DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             T +G+  I +  +K     +      L        + +     +  +R +
Sbjct: 118 ATTGRGLHVIKVLAEKFQATIQQMNPEELYEMIHNPALLEDVQ--LVDVRED 167


>gi|288800857|ref|ZP_06406314.1| putative PPIC-type PPIASE domain protein [Prevotella sp. oral taxon
           299 str. F0039]
 gi|288332318|gb|EFC70799.1| putative PPIC-type PPIASE domain protein [Prevotella sp. oral taxon
           299 str. F0039]
          Length = 461

 Score = 52.8 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/273 (11%), Positives = 74/273 (27%), Gaps = 35/273 (12%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
           + S    A    I   I+GE I                                      
Sbjct: 1   MCSAALSAQEHNIVMMIDGEPIARS-----------------------------IFIDAY 31

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
            +            Y F +   +  L  +  +    +  + + + K   +   +  DVV 
Sbjct: 32  KQNYPNGVSGKKELYHFAERYADYYLKCKVAAQQQQENAVENRNKKVVSSASILKNDVV- 90

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
                        I        +       ++ +   +     +      K   +A  ++
Sbjct: 91  --VSADIEQQARNIYNKIASEVSSKGGLVKLQDIHIYLSQRASKADEKNAKDQIEAIYNK 148

Query: 210 LRLPKDCNKLEKFAS--KIHDVSIGKAQYLLESD-LHPQFQNLLKKSQNNTTNPYVTQKG 266
           ++  +D  KL +  +   ++  + G+  +L +   L          S    + P+++  G
Sbjct: 149 VKAGEDFGKLAQLYTQNTLYRATKGELPWLAKGQTLSEFENVAFALSPGEVSKPFMSVDG 208

Query: 267 VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
              + +  K D      ++A +       K+ K
Sbjct: 209 YHLLYLQKKVDFLSYNEVRANIIDFILKEKVRK 241


>gi|328768505|gb|EGF78551.1| hypothetical protein BATDEDRAFT_30473 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 127

 Score = 52.8 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 26/87 (29%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ-------NL 249
               +I +A E      +     E+++      + G   ++    +   FQ         
Sbjct: 42  EKHSKIMEALELLKSGQRFDKVAEQYSED-KAKAGGSLGWMTRGSMVGVFQDAAFLLVPS 100

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKR 276
                  T  P  +  G   I + D++
Sbjct: 101 TPDKPIYTNPPVKSNFGYHIIMVEDRK 127


>gi|195573805|ref|XP_002104882.1| GD21195 [Drosophila simulans]
 gi|194200809|gb|EDX14385.1| GD21195 [Drosophila simulans]
          Length = 130

 Score = 52.8 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             Q +I +A E      K       ++        G   + +   +   FQ+       +
Sbjct: 45  EKQGKITEAMEKLKAGQKFPEVAAAYSED-KARQGGDLGWQIRGAMVGPFQDAAFALPIS 103

Query: 257 TT-------NPYVTQKGVEYIAICDKR 276
           T         P  T+ G   I +  K+
Sbjct: 104 TVNNPVYTDPPIKTKFGYHIIMVEGKK 130


>gi|86143854|ref|ZP_01062222.1| peptidyl-prolyl cis-trans isomerase [Leeuwenhoekiella blandensis
           MED217]
 gi|85829561|gb|EAQ48024.1| peptidyl-prolyl cis-trans isomerase [Leeuwenhoekiella blandensis
           MED217]
          Length = 707

 Score = 52.8 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/247 (9%), Positives = 63/247 (25%), Gaps = 11/247 (4%)

Query: 44  TTINGEVITDG----------DISKRIALLKLQKING-ELEKIAVQELIVETLKKQEIEK 92
            +++ E IT            + ++ I  +K  +    + E+   + L     K+ E   
Sbjct: 211 VSVSKEEITAYIKEHSNEFQTEAARNIRYVKFNEDPTLKDEEAVKESLTQLLEKRVEYTA 270

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
           +  T D+                 +++  +                        V     
Sbjct: 271 ATKTNDTVAGLATTTNPEDFVNEYSDERYTDAYLFKNELPSAAADELWALDEGAVYGPYK 330

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
             +   +   +   +      +    L    L +                  A   +   
Sbjct: 331 DGETFKISKVVAVTQIPDSVQSSHILLTYQGLANAGAQTRTKAEAKALADSLAGVIKAAP 390

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAI 272
            K  +   +F++       G   Y  +      F + +   +        ++ G   I I
Sbjct: 391 SKLADLAPEFSADGSKEKGGDLGYATKGRFVKPFNDFIFDGKTGDVGVVESRFGYHVIRI 450

Query: 273 CDKRDLG 279
            D++++ 
Sbjct: 451 TDQKNVQ 457



 Score = 40.8 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/263 (8%), Positives = 70/263 (26%), Gaps = 4/263 (1%)

Query: 56  ISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
           +  R     ++  + +  + A++   V    +   E     F+  T     V   +N   
Sbjct: 439 VESRFGYHVIRITDQKNVQRAIKLATVTKAVEPSQETINNVFNETTKFQMAVTEDKNGFD 498

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
                  +  +     N   + L  Q    ++++  F  +    ++E    +     + V
Sbjct: 499 DIAKEGGYNVRPVNNINALDETLPGQGSQREIIRWAFDEERKTGDVERFNVEGGYLVVQV 558

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK---FASKIHDVSIG 232
            +   + +L +   +         ++  +  +  +                     V++ 
Sbjct: 559 TKKTEKGLLPADEASPRVTPVLRNQKKAEQIKKNISGSDLSAIASANNTTVQTSPGVNLK 618

Query: 233 KAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN 292
                                +   + P    +GV  + +             ++   + 
Sbjct: 619 NPTLAGSGTEPKVVGKAFGLEEGEVSEPIEGNRGVYVVKVTKITPARELDNYASFAVQKQ 678

Query: 293 TPTKIEKHEAEYVKKLRSNAIIH 315
              +   +    ++ L+  A I 
Sbjct: 679 NADRATVNMRI-IQALKDAAEIE 700


>gi|217076606|ref|YP_002334322.1| basic membrane protein, putative [Thermosipho africanus TCF52B]
 gi|217036459|gb|ACJ74981.1| basic membrane protein, putative [Thermosipho africanus TCF52B]
          Length = 333

 Score = 52.4 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/320 (9%), Positives = 83/320 (25%), Gaps = 47/320 (14%)

Query: 33  YKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK------------------ 74
           +     ++     +NGE IT   +++   + KL     ++++                  
Sbjct: 17  FSEELPATSTVAVVNGEAITLEQLNRAADVQKLMIGISQVDQTFFSVLSNTEEGVKVILR 76

Query: 75  ---IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
              + + +L+ + L  Q  +K G       V     +   +            D      
Sbjct: 77  YKRVVLDDLVNKLLIVQFAQKYGARLSEEEVRNVVDKQISDYLDQQGIDEKTFDMYLQYA 136

Query: 132 NHFKQYLAIQSIWPDV--------VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
           N        + ++ +         + N         + E+    QK  +           
Sbjct: 137 NMGTLEDFKEKMYFETLVNLSLERLFNVVTKDATVSDEELMDYYQKHIDEYSTPTQYTLS 196

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
           L +  + K+ N    +    +  +S            +  ++                  
Sbjct: 197 LIAFDNEKVANAVKTKIVSGETFDSIASEYGISQFKYENIAEDTTFPG------------ 244

Query: 244 PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG--EIALKAYLSAQNTPTKIEKHE 301
             +  +    Q     P    +      + +   +       ++  +S      K +   
Sbjct: 245 KLWNYIKNAPQGALLGPIDVDEKYYIFKVENVVPMQSKKFDEVREEISNMILSEKKKNMW 304

Query: 302 AEYVK----KLRSNAIIHYY 317
           A ++     K ++ + +  Y
Sbjct: 305 ANFIDSEFSKFKNESTVEVY 324


>gi|70730940|ref|YP_260681.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas fluorescens
           Pf-5]
 gi|68345239|gb|AAY92845.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas fluorescens
           Pf-5]
          Length = 91

 Score = 52.4 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 5/77 (6%), Positives = 22/77 (28%), Gaps = 1/77 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-N 255
              +  +  ++   +        +K+++       G    +    +      ++ K    
Sbjct: 11  KTAEEAEQLKQRIAKGEAFDVLAKKYSTCPSGKRGGDLGEVRPGQMVGAIDQVIFKKPLR 70

Query: 256 NTTNPYVTQKGVEYIAI 272
               P  ++ G   + +
Sbjct: 71  TVHGPIKSKFGYHLVQV 87


>gi|255627135|gb|ACU13912.1| unknown [Glycine max]
          Length = 126

 Score = 52.4 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 12/111 (10%), Positives = 27/111 (24%), Gaps = 1/111 (0%)

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           E+ A+   +K+   R                  +  V +     ++         +   +
Sbjct: 13  EVRASHMLIKHEGSRRKASWKDPEGRIIKSTTRENAVSQLKALRDDIVSGKATFEDIASR 72

Query: 222 FASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
           F+        G         +   F+           ++   T  GV  I 
Sbjct: 73  FSDCSSAKRGGDLGPFGRGQMQKPFEEATFALKIGGISDIVDTDSGVHIIK 123


>gi|168047948|ref|XP_001776430.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672156|gb|EDQ58697.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 111

 Score = 52.4 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 9/105 (8%), Positives = 34/105 (32%), Gaps = 4/105 (3%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
               +R +L       +     + +R       ++   +     +K++        G   
Sbjct: 8   TYVKVRHILSEKQGLMMDVYNQL-QRGWLVFGHKVPPKEFSKLAKKYSECRSAKDGGDLG 66

Query: 236 YLLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
           ++  + L    P  +        + +N + + +G   + +  +++
Sbjct: 67  WVARAKLGTAGPFQEVSFTTPVGSCSNVFQSSQGFHVVLVEARKN 111


>gi|242776498|ref|XP_002478848.1| peptidyl-prolyl cis/trans isomerase [Talaromyces stipitatus ATCC
           10500]
 gi|218722467|gb|EED21885.1| peptidyl-prolyl cis/trans isomerase [Talaromyces stipitatus ATCC
           10500]
          Length = 216

 Score = 52.4 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 8/110 (7%), Positives = 28/110 (25%), Gaps = 1/110 (0%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                +    +       R   +   +     +  ++      +  +    +  +     
Sbjct: 88  AEGKIRCAHLLVKHRDSRRPSSWRESNITRTKEEAIEILRGHEQRIKSGEIRLADLAVSE 147

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
           +        G   +    ++  +F++          ++   TQ GV  I 
Sbjct: 148 SDCSSARKKGDLGFFGRGEMQKEFEDAAFALQPGEISSIVETQSGVHLIE 197


>gi|150003020|ref|YP_001297764.1| peptidyl-prolyl cis-trans isomerase [Bacteroides vulgatus ATCC
           8482]
 gi|149931444|gb|ABR38142.1| peptidyl-prolyl cis-trans isomerase [Bacteroides vulgatus ATCC
           8482]
          Length = 446

 Score = 52.4 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/175 (7%), Positives = 45/175 (25%), Gaps = 4/175 (2%)

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                  D        +      +++          +       Q  + +   +++    
Sbjct: 68  YAHDMGIDTLSVFRRQVDWYRGKLLRTYLADAEKEEQAARRLYLQGEQRLQANDWIKIAH 127

Query: 184 LFSIPDNKLQNQGF--VQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYLLES 240
           +          Q    V++++    E+            +++         G   ++  +
Sbjct: 128 ISKYLSQNASRQEEMRVRQQMDSVYEALREGADFATLARRYSDDEACKNVGGVLPWMPVN 187

Query: 241 -DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP 294
            ++      L    +N  + P+ +  G+  +   D+R        +  L      
Sbjct: 188 KNMQEWIDKLESLERNKISAPFYSPMGIHIVKWIDRRQGVSFEEKREQLLNYLEK 242


>gi|156741511|ref|YP_001431640.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseiflexus
           castenholzii DSM 13941]
 gi|156232839|gb|ABU57622.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseiflexus
           castenholzii DSM 13941]
          Length = 517

 Score = 52.4 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/215 (6%), Positives = 49/215 (22%), Gaps = 22/215 (10%)

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
             E  +           H       + ++   ++     K     +            ++
Sbjct: 261 YDEYVNEMRRVDPQRRIHLTIDDFRRGLYAQFLRQVLTSKVQEQLVPDATFTPTTDPSSI 320

Query: 176 REYLIRTVLFSI----PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVS 230
               I   +        + + +     +   +                 + +   +   +
Sbjct: 321 EVRHILLKVTVPLTATEEERERAFAARRAEAEALLADARAAADFAELARERSEDFNTKET 380

Query: 231 IGKAQYLLESD--------LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEI 282
            G      +               Q +   ++N+   P  T  G   + +  +R +    
Sbjct: 381 GGTLPLFDKDGKTTDGRQIDPAIVQAIANAAENDIVGPVRTSFGWHIVQLV-RRTVDTRE 439

Query: 283 ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
                  A        +    ++++ R+   I  +
Sbjct: 440 VQLNKARA--------EAFERWLEEQRAAINIQRF 466


>gi|320587658|gb|EFX00133.1| peptidyl-prolyl cis trans isomerase [Grosmannia clavigera kw1407]
          Length = 182

 Score = 52.4 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/167 (10%), Positives = 40/167 (23%), Gaps = 2/167 (1%)

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
                    S      F +               + +   + K     +    + +  A 
Sbjct: 13  PNWEVRHSNSKNLPYYFNNVDKTSRWEPPNQTNTEQLKLYMAKYHSGQRLQQQQAQQQAG 72

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASK 225
           K +  ++ V+    R           +++   +  I   E+   R            +  
Sbjct: 73  KIRAAHLLVKHRDSRRPASWREAEITRSKEEARSIISGYEDRMRRGEISLGELALTESDC 132

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                 G   Y    D+  +F++          +    T  G+  I 
Sbjct: 133 SSARKSGDLGYFGRGDMQKEFEDAAFALKPGEVSGIIETASGLHLIE 179


>gi|302653909|ref|XP_003018770.1| hypothetical protein TRV_07205 [Trichophyton verrucosum HKI 0517]
 gi|291182444|gb|EFE38125.1| hypothetical protein TRV_07205 [Trichophyton verrucosum HKI 0517]
          Length = 150

 Score = 52.4 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 6/85 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               + ++A E      K  +   +F+        G   + +   L   F+    + + +
Sbjct: 67  EKHSKKEEALEKLRAGAKFDDVAREFSED-KARQGGSLGWKVRGSLDAAFEKAAYELEPS 125

Query: 257 TTN-P----YVTQKGVEYIAICDKR 276
           TT  P      T  G   I +  ++
Sbjct: 126 TTGNPKYVEVKTGFGYHIIMVEGRK 150


>gi|15640000|ref|NP_219453.1| basic membrane protein (tpn39b) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189026239|ref|YP_001934011.1| basic membrane protein [Treponema pallidum subsp. pallidum SS14]
 gi|231640|sp|P29725|BMP_TREPA RecName: Full=Basic membrane protein; Flags: Precursor
 gi|155055|gb|AAA27475.1| basic membrane protein precursor [Treponema pallidum]
 gi|3323343|gb|AAC65966.1| basic membrane protein (tpn39b) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018814|gb|ACD71432.1| basic membrane protein [Treponema pallidum subsp. pallidum SS14]
 gi|291060373|gb|ADD73108.1| basic membrane protein [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 361

 Score = 52.4 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 46/346 (13%), Positives = 97/346 (28%), Gaps = 48/346 (13%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTIN---GEVITDGDISKRIALLKLQKING---ELE 73
           +++     V  + +     + +    +N    E +T G I  RI+ ++ +          
Sbjct: 4   YIVPALLCVAGMGFAHAQSALQPIAEVNLFRREPVTLGQIKARISAIEKEMGKKLSTAER 63

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT----------------GLSA 117
           +  +  LI E L  Q  EK+GI      VN +F                         + 
Sbjct: 64  RQFMDSLIDEKLFAQAAEKAGIQVTDAEVNQYFNGMLSQQIGRAVTEAEFANYVKEKQNI 123

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND----FMLKYGNLEMEIPANKQKMKNI 173
                   + G+    +K++L  Q      V       F    G  + +I +  +  K  
Sbjct: 124 SLDQFMKQQNGMTMAEYKKFLKTQVSTQRYVAQKKADEFRNLKGPEDSQIRSYYELNKQA 183

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGK 233
             R   ++  L S+P          + +    +     +    +   K        S G+
Sbjct: 184 FFRPDTVKLFLISVPKGSGPAAAKAKAQEFVKKLKSSGVKATADIKSKANGAQAGYSAGE 243

Query: 234 --AQY--LLESDLH---PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG------ 280
                  +  + L         +        ++   T    +   +  K +         
Sbjct: 244 IYLGKTAVTATQLGLTMEALLEIFGMGVGAVSDVNETANDYQCFIVLKKEEAKILTLSDL 303

Query: 281 ---------EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
                       +K  L++Q     +E    E   +LR +     +
Sbjct: 304 VEPDKTVSLYEFIKNLLTSQIQQKALEDAIREVSAELRKSGTYKVF 349


>gi|328543803|ref|YP_004303912.1| PpiC-type peptidyl-prolyl cis-trans isomerase [polymorphum gilvum
           SL003B-26A1]
 gi|326413547|gb|ADZ70610.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polymorphum gilvum
           SL003B-26A1]
          Length = 630

 Score = 52.4 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/236 (6%), Positives = 50/236 (21%), Gaps = 21/236 (8%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +      F+  +    +++ F +  I         + +   +    I+     +  
Sbjct: 1   MLDALRKGAGTFVAKIFIALLILSFAVWGIADIFQGFGRN-VAARVGDTEISLQSFDQAY 59

Query: 61  ALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
                                   L +  +  L+ E     +     +      +     
Sbjct: 60  RRELSALSRQIGRPLSTTEGAQIGLPQQVLGRLVAEAALDDDARAMTLGISDAELIRVIQ 119

Query: 108 QHARNT----GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
                     G      +  L   GI ++ +       +    + +            ++
Sbjct: 120 ADPVFQRPGGGFDRARLAQLLRANGISEDDYVVERRRLAERQQIAEALSGSLISP---QV 176

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
                       R      +  +   +  +      +   D   +  R P+     
Sbjct: 177 LLEAFNAYQNETRTVRYLLLTPAAVGSIAEPDDAALEAYFDDNRAAFRAPEYRRLA 232


>gi|322436235|ref|YP_004218447.1| hypothetical protein AciX9_2642 [Acidobacterium sp. MP5ACTX9]
 gi|321163962|gb|ADW69667.1| hypothetical protein AciX9_2642 [Acidobacterium sp. MP5ACTX9]
          Length = 257

 Score = 52.4 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 47/140 (33%), Gaps = 12/140 (8%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGE----LEKIAVQELIVETLKKQ------- 88
            ++   +NG++I + D+++       Q  +        +  VQ LI  +L  Q       
Sbjct: 57  DQVVAVVNGDLILESDVAEERRFGAFQPFSNPEGTYSREETVQRLIDRSLILQQARLQPD 116

Query: 89  -EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
             + K   T + N +        +    +   +  F++ QG       ++   +      
Sbjct: 117 DAVTKEQATSELNELRGVIPACKQYRCETDAGWQKFVEAQGFTVAELTKHWQQRMQVLKF 176

Query: 148 VKNDFMLKYGNLEMEIPANK 167
           ++  F +     + EI    
Sbjct: 177 IEVRFRMGIRITQQEIKDYY 196


>gi|167950975|ref|ZP_02538049.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 93

 Score = 52.4 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 241 DLHPQFQNLLKKSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
            + P    +    +   +  P  TQ G   I + D RDL         + ++ T    ++
Sbjct: 1   MVKPFADAVQAMEKGKYSEAPVKTQFGWHVILLEDSRDLPA--PSLDAVRSELTTRLQQQ 58

Query: 300 HEAEYVKKLRSNAIIHY 316
             A+Y+++LR+   +HY
Sbjct: 59  VLADYIQELRAKTKLHY 75


>gi|74662494|sp|Q7RYY4|PIN4_NEUCR RecName: Full=Peptidyl-prolyl cis-trans isomerase pin-4;
           Short=PPIase pin-4; AltName: Full=Parvulin-14;
           Short=Par14
          Length = 130

 Score = 52.4 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN 259
           + ++A               +++      + G   +  +  L P+F+ +      ++T++
Sbjct: 51  KKEEALAKIRDGADFGAVAREYSED-KARTGGSLGWKQKGTLDPEFEKVAFALETSSTSS 109

Query: 260 P----YVTQKGVEYIAICDKR 276
           P      TQ G   I +  K+
Sbjct: 110 PKIGEVKTQFGYHIIMVEGKK 130


>gi|313227202|emb|CBY22349.1| unnamed protein product [Oikopleura dioica]
          Length = 158

 Score = 52.4 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 7/87 (8%), Positives = 21/87 (24%), Gaps = 1/87 (1%)

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
           +   +  +  +  +++  K   +         +   + +        G         +  
Sbjct: 68  WRNNNITISKEEALEQLNKYMVQIESGERSFADLASEVSDCSSAKRCGDLGPFGRGQMQR 127

Query: 245 QFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            F+           +    T  GV  I
Sbjct: 128 PFEEATFALKVGEMSGVVDTDSGVHII 154


>gi|124003471|ref|ZP_01688320.1| ppic-type ppiase domain protein [Microscilla marina ATCC 23134]
 gi|123991040|gb|EAY30492.1| ppic-type ppiase domain protein [Microscilla marina ATCC 23134]
          Length = 693

 Score = 52.4 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/278 (8%), Positives = 62/278 (22%), Gaps = 21/278 (7%)

Query: 50  VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
            +TD ++   +     +  + E   +    L          E S    +           
Sbjct: 207 KVTDAELEAYMRDHADEYKSQETRSLEYYAL----SIDPSPEDSTKFANLIRQTAKDFAK 262

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM--LKYGNLEMEIPANK 167
           A N    A   S         D         +++                   +   ++ 
Sbjct: 263 AENDSAFAVINSDDPPNMNFQDPTKLPKEIWETVPTLTKGAVVGPLNNKNTYTIYKISDT 322

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
           +              +       + +     +K     ++         N+   + +   
Sbjct: 323 KADTANYYANVSNLLIKADSTMKQSEQDSARRKAEGILKKLLDNPGDFENQANTYNTDGT 382

Query: 228 DVSIGKAQYLLESDLHPQF--QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK 285
               G   +         F                  +  G   I +        ++   
Sbjct: 383 KGKGGALGWSNLKTFVKPFSEAIKGTDKIGVIPKVVKSAYGYHIIKVV--HPSTNKLYKV 440

Query: 286 AYLSAQNTPTK--IEKHEA---------EYVKKLRSNA 312
           A +     P K  I++            + +++LR+NA
Sbjct: 441 ATIKKTLLPGKSTIDEAFKTTDKLVNNSKTLEELRANA 478


>gi|225431173|ref|XP_002269631.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297735030|emb|CBI17392.3| unnamed protein product [Vitis vinifera]
          Length = 118

 Score = 52.4 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 8/76 (10%), Positives = 18/76 (23%), Gaps = 1/76 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQN 255
            V +     ++      K  +   + +        G         +   F+         
Sbjct: 40  AVTQIKAIRDDIISGKSKFSDVASQISDCSSAKRGGDLGPFGRGQMQKPFEEATYALKVG 99

Query: 256 NTTNPYVTQKGVEYIA 271
             ++   T  GV  I 
Sbjct: 100 EISDIVETDSGVHIIM 115


>gi|160895085|ref|ZP_02075859.1| hypothetical protein CLOL250_02636 [Clostridium sp. L2-50]
 gi|156863516|gb|EDO56947.1| hypothetical protein CLOL250_02636 [Clostridium sp. L2-50]
          Length = 365

 Score = 52.4 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/326 (9%), Positives = 89/326 (27%), Gaps = 29/326 (8%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMSSR------IRTTINGEVITDGDISKRIALLKL 65
           ++K      + +I   V +++  +    S+      I      + I   ++         
Sbjct: 19  WMKRRILKAISLICACVMLLTLAACGEESQDNTGKYIVFKFGNDNIYLDEVYIYAQTTID 78

Query: 66  QKING------------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
           +                      ++E++A +E+I   ++ + +      +  +       
Sbjct: 79  EYEKEYGSDIWGKTIETDGGIEMDVEEMARREVISNIVQTKALIAQADEYKISLTEEEQA 138

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
           Q  +         +    K+   +      +  ++     + +  M        +  A  
Sbjct: 139 QAEQEAEDFYNSLTDEQLKETGMEADTPSRVLQENALAKKIYDHVMSDSSAEVSDEQARM 198

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
               ++    Y        +  +K +     QK  +     + +L  + N    F    +
Sbjct: 199 TTFYDMFFECYYEDDFGNIVVYSKDKIAEQKQKADEAYTSIKQQLSDNPNLNITFLGHTN 258

Query: 228 DVSIGKAQYLLESDL-----HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEI 282
           ++    +  + +  +           L      + +    T+ G     +    D     
Sbjct: 259 NLRYAGSHTMSKDQILESYGQEVLDTLYDMQDGDISPVIETENGYHIFQMTYLTDEKATA 318

Query: 283 ALKAYLSAQNTPTKIEKHEAEYVKKL 308
             KA L+ +            +V K+
Sbjct: 319 TNKAELTKEANDAYFNNLLTNWVSKI 344


>gi|195354844|ref|XP_002043906.1| GM17827 [Drosophila sechellia]
 gi|194129144|gb|EDW51187.1| GM17827 [Drosophila sechellia]
          Length = 126

 Score = 52.4 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             Q +I +A E      K       ++        G   + +   +   FQ+       +
Sbjct: 41  EKQGKITEAMEKLKAGQKFPEVAAAYSED-KARQGGDLGWQIRGAMVGPFQDAAFALPIS 99

Query: 257 TT-------NPYVTQKGVEYIAICDKR 276
           T         P  T+ G   I +  K+
Sbjct: 100 TVNNPVYTDPPIKTKFGYHIIMVEGKK 126


>gi|310824216|ref|YP_003956574.1| ppic-type peptidyl-prolyl cis-trans isomerase [Stigmatella
           aurantiaca DW4/3-1]
 gi|309397288|gb|ADO74747.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stigmatella
           aurantiaca DW4/3-1]
          Length = 329

 Score = 52.4 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/249 (12%), Positives = 74/249 (29%), Gaps = 16/249 (6%)

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           +     +  I +      +   +    +         E F     +QG+  +      A 
Sbjct: 44  VTLEQLQTYISQMNPAARTRVQSVEQRREYAEGLARFELFVREAQRQGLEKDPEVLEAAK 103

Query: 141 QSIWPDVVKNDFMLKYGN-LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
           +++   ++  +F  K       +I A  +  K   V     R     +P  +       +
Sbjct: 104 RAMVQRLLHKEFEEKAAPVTPEDIAAYYEMNKAEFVSPARWRYSHLLVPAPQGSADRAAK 163

Query: 200 KRIKDAEESRLRLPKDCNK-------LEKFASKIHDVSIGKAQYLLESDLHPQFQNL--- 249
           K++  A   + R  +  +         E   +     +      +   +L  +       
Sbjct: 164 KKLAQALLEKARKLQPLDFDGFDALGGEASGNPDTKPASADTHLVTAEELKERLGPEVAA 223

Query: 250 ---LKKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEY 304
                +   +T+    + KG   + + D R        A+ + L ++    + +   + Y
Sbjct: 224 AAGKLQRVGDTSAVVESPKGFHLLKLTDLRPERNQPLDAVSSMLRSRIARERRDASVSAY 283

Query: 305 VKKLRSNAI 313
             KL+  A 
Sbjct: 284 TVKLQEQAQ 292


>gi|294775655|ref|ZP_06741163.1| PPIC-type PPIASE domain protein [Bacteroides vulgatus PC510]
 gi|294450499|gb|EFG18991.1| PPIC-type PPIASE domain protein [Bacteroides vulgatus PC510]
          Length = 441

 Score = 52.4 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/175 (7%), Positives = 45/175 (25%), Gaps = 4/175 (2%)

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                  D        +      +++          +       Q  + +   +++    
Sbjct: 63  YAHDMGIDTLSVFRRQVDWYRGKLLRTYLADAEKEEQAARRLYLQGEQRLQANDWIKIAH 122

Query: 184 LFSIPDNKLQNQGF--VQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYLLES 240
           +          Q    V++++    E+            +++         G   ++  +
Sbjct: 123 ISKYLSQNASRQEEMRVRQQMDSVYEALREGADFATLARRYSDDEACKNVGGVLPWMPVN 182

Query: 241 -DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP 294
            ++      L    +N  + P+ +  G+  +   D+R        +  L      
Sbjct: 183 KNMQEWIDKLESLERNKISAPFYSPMGIHIVKWIDRRQGVSFEEKREQLLNYLEK 237


>gi|115371844|ref|ZP_01459157.1| peptidyl-prolyl cis-trans isomerase D [Stigmatella aurantiaca
           DW4/3-1]
 gi|115371079|gb|EAU70001.1| peptidyl-prolyl cis-trans isomerase D [Stigmatella aurantiaca
           DW4/3-1]
          Length = 334

 Score = 52.4 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/249 (12%), Positives = 74/249 (29%), Gaps = 16/249 (6%)

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           +     +  I +      +   +    +         E F     +QG+  +      A 
Sbjct: 49  VTLEQLQTYISQMNPAARTRVQSVEQRREYAEGLARFELFVREAQRQGLEKDPEVLEAAK 108

Query: 141 QSIWPDVVKNDFMLKYGN-LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
           +++   ++  +F  K       +I A  +  K   V     R     +P  +       +
Sbjct: 109 RAMVQRLLHKEFEEKAAPVTPEDIAAYYEMNKAEFVSPARWRYSHLLVPAPQGSADRAAK 168

Query: 200 KRIKDAEESRLRLPKDCNK-------LEKFASKIHDVSIGKAQYLLESDLHPQFQNL--- 249
           K++  A   + R  +  +         E   +     +      +   +L  +       
Sbjct: 169 KKLAQALLEKARKLQPLDFDGFDALGGEASGNPDTKPASADTHLVTAEELKERLGPEVAA 228

Query: 250 ---LKKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEY 304
                +   +T+    + KG   + + D R        A+ + L ++    + +   + Y
Sbjct: 229 AAGKLQRVGDTSAVVESPKGFHLLKLTDLRPERNQPLDAVSSMLRSRIARERRDASVSAY 288

Query: 305 VKKLRSNAI 313
             KL+  A 
Sbjct: 289 TVKLQEQAQ 297


>gi|330950422|gb|EGH50682.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae Cit 7]
          Length = 91

 Score = 52.4 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 6/77 (7%), Positives = 20/77 (25%), Gaps = 1/77 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
              +  +  +    +        +K +S       G    +    +      ++ K    
Sbjct: 11  KTAEEAEQLKLRIAKGGAFDVLAKKHSSCPSGKRGGDLGEVRPGQMVGAIDQVIFKKPLR 70

Query: 257 TT-NPYVTQKGVEYIAI 272
               P  ++ G   + +
Sbjct: 71  VVHGPIKSKFGYHLVQV 87


>gi|294930458|ref|XP_002779567.1| peptidyl-prolyl cis-trans isomerase ESS1, putative [Perkinsus
           marinus ATCC 50983]
 gi|239888920|gb|EER11362.1| peptidyl-prolyl cis-trans isomerase ESS1, putative [Perkinsus
           marinus ATCC 50983]
          Length = 110

 Score = 52.4 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 8/85 (9%), Positives = 27/85 (31%), Gaps = 1/85 (1%)

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
             +  + +   +++     E+ +          +  +      + G   +    ++   F
Sbjct: 26  CHEISISHDEALKEIKDMIEKLKADKRIFSEMAKARSDCGSYKNGGDLGFFDRGEMQRPF 85

Query: 247 QNLLKK-SQNNTTNPYVTQKGVEYI 270
           +++         + P  T  GV +I
Sbjct: 86  EDVAFSLKIGELSGPVETDSGVSFI 110


>gi|162449966|ref|YP_001612333.1| peptidyl-prolyl cis-trans isomerase [Sorangium cellulosum 'So ce
           56']
 gi|161160548|emb|CAN91853.1| peptidyl-prolyl cis-trans isomerase [Sorangium cellulosum 'So ce
           56']
          Length = 302

 Score = 52.4 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/280 (9%), Positives = 64/280 (22%), Gaps = 41/280 (14%)

Query: 44  TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
             +    IT  ++ +R+A +                      + Q   ++      N VN
Sbjct: 2   ARVGDAAITASEVERRLAQVPP-------------------FQLQTFGRTPEEIRKNFVN 42

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
              V   R   L+    +  L ++    +  +  L    +     +        + E+  
Sbjct: 43  QVLV---RELLLAQGAAAQKLTERADVQDRVRGVLRSALLQRIQAEAAASSPVTDEEVRA 99

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
                + +  +     +  +L +           ++K         +   K  +K     
Sbjct: 100 YYEAHRDRFSSPAMVALWRILVATRGEAEAILAELKKDPSPQRFKEIAREKSLDKA---- 155

Query: 224 SKIHDVSIGKAQYLLES---------DLHPQFQNLLKKSQNN-TTNPYVTQKGVEYIAIC 273
                +  G   ++                                P     G   +   
Sbjct: 156 ---TSMRGGDLGFVASDGTTSEPGLKVDPGLLSAAAGVKDAELVPEPVPEGDGFAVLWRR 212

Query: 274 DKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             R             +       K E    + + +LR+ 
Sbjct: 213 QSRKPVSRSLEQEAPSIRQILAHGKAEAQVKQLLDRLRAQ 252


>gi|149244896|ref|XP_001526991.1| peptidyl-prolyl cis-trans isomerase 1 [Lodderomyces elongisporus
           NRRL YB-4239]
 gi|146449385|gb|EDK43641.1| peptidyl-prolyl cis-trans isomerase 1 [Lodderomyces elongisporus
           NRRL YB-4239]
          Length = 176

 Score = 52.4 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 7/77 (9%), Positives = 23/77 (29%), Gaps = 1/77 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ- 254
             +    K   +      K  +  +  +        G   +  + ++ P F++ +     
Sbjct: 97  EAISIAKKHLAQILSGEAKFADVAQAESDCSSHARGGDLGFFGKREMQPAFESTVYSMHV 156

Query: 255 NNTTNPYVTQKGVEYIA 271
              ++   T  G+  + 
Sbjct: 157 GEISDVIETDSGIHLVQ 173


>gi|259503634|ref|ZP_05746536.1| foldase PrsA1 [Lactobacillus antri DSM 16041]
 gi|259168408|gb|EEW52903.1| foldase PrsA1 [Lactobacillus antri DSM 16041]
          Length = 318

 Score = 52.4 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/293 (9%), Positives = 74/293 (25%), Gaps = 38/293 (12%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           + +  ++ +     ++     A  ++   T +G  IT  +    +             K 
Sbjct: 1   MKSKKLIAVIAGAALM-LPLAACGNKAVATTSGGKITQSEYYSSMKATSN-------GKQ 52

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +Q++I++ + ++E  K       N                   + S        +   +
Sbjct: 53  VLQQMILDKVLEKEYGKQVSDKQVN----------AQYNSYKSQYGSQFSSFLQQNGMTE 102

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    Q     +++                           ++          +  + ++
Sbjct: 103 KSFKQQLRSNLLLEAAV-----------RDYSHITNKRINAQWKKYQPKVQTAEILVGSK 151

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD------LHPQFQNL 249
              Q  I     S  +        +  ++   + + G    +   D           +  
Sbjct: 152 NDAQDIIDQLNSSSDKYKTFKKLAKSKSTDSSNKNNG--GRVPAFDNTDNSLDSAYKEAA 209

Query: 250 LKKSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE 301
            K      T  P  T  G + I + +    G +    A L  Q     +    
Sbjct: 210 FKLKTGEYTTTPVKTDDGYQVIYMIEHPAKGKKSQHIADLRTQIVQENMNNRT 262


>gi|256085044|ref|XP_002578734.1| rotamase [Schistosoma mansoni]
 gi|238664117|emb|CAZ34972.1| rotamase, putative [Schistosoma mansoni]
          Length = 154

 Score = 52.4 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 9/109 (8%), Positives = 24/109 (22%), Gaps = 2/109 (1%)

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK-LEKFA 223
              + +  +       R   +   +        +       ++          +     +
Sbjct: 43  NKVRCLHLLVKHNESRRPSSWKQQNITRSKDEALNLIKSKIKQQIESGEYTFEELARTES 102

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                 S G   +     +   F++   K        P  T  G+  I 
Sbjct: 103 DCSSAHSGGDLNFFSRGQMQKPFEDAAFKLEIGEMCGPVYTDSGIHLIK 151


>gi|300770131|ref|ZP_07080010.1| peptidylprolyl cis-trans isomerase [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300762607|gb|EFK59424.1| peptidylprolyl cis-trans isomerase [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 703

 Score = 52.4 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/127 (11%), Positives = 38/127 (29%), Gaps = 3/127 (2%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
           +     +           + +    +    +         +F+       + G       
Sbjct: 349 KASHILLNPTAEGGVDKAKAKADSIKNLIAKGEAFGPLAIQFSQDEGSKANGGDLGTFGR 408

Query: 240 SDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
             + P+F   + + +        +Q GV  + I   + +G    +KA +  +   +  E 
Sbjct: 409 GRMVPEFDKAVFEGKTGDVLIVNSQFGVHIVKIE--KQIGNSKVVKAAIVDKTISSGKET 466

Query: 300 HEAEYVK 306
            +A Y K
Sbjct: 467 IDAAYAK 473


>gi|237756262|ref|ZP_04584821.1| hypothetical protein SULYE_0873 [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691581|gb|EEP60630.1| hypothetical protein SULYE_0873 [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 460

 Score = 52.4 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 40/166 (24%), Gaps = 6/166 (3%)

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
             K    + +           +++      V   I     +       +         +L
Sbjct: 291 DKKVSFTKAQNEYYISLFNGESLKSIPYEQVKNEIKQKLERELSQKALQDMQKTTDITQL 350

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAI 272
            K     ++  S      +     +   DL+              + P  T+ G+    +
Sbjct: 351 LKQNKTEKQTISDNTIQELVVKFGIKREDLNKL----ANLKVGEISKPISTENGILIFKL 406

Query: 273 CDKRDLGGEI--ALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            + ++         K  +       K       YV  LR  A I  
Sbjct: 407 TEIKEPDKSQVDETKKTILPFIKSQKFNDVYQMYVDSLRKKAKIKI 452



 Score = 42.7 bits (98), Expect = 0.073,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 66/184 (35%), Gaps = 12/184 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI---- 56
           M  K+  S    I L  T F  +   IV I+ YK     +     +NG+ I   +     
Sbjct: 1   MFDKISQSKWKNIVLFITVFAFVATSIVAIIVYKLSGEING-VAEVNGKEIPFYEFNYAY 59

Query: 57  -----SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
                + ++  L +  +  +++K  V +LI + L  QE EK GIT  S  V    ++ + 
Sbjct: 60  EMTARNMQMQNLDISNLKDQIKKEVVNDLIEKELLYQEAEKEGITATSEQVKNEILKISA 119

Query: 112 N--TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
               G   +     +           + +  + +  + +K   +      + EI    +K
Sbjct: 120 FQVNGKFDKQIYLQIINSFGLTPDAFENILKKELSVNNLKTILLSTIYVSDEEIETFTKK 179

Query: 170 MKNI 173
               
Sbjct: 180 QLTR 183


>gi|73984320|ref|XP_849005.1| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase
           NIMA-interacting 4 (Rotamase Pin4) (PPIase Pin4)
           (Parvulin 14) (Par14) (Peptidyl-prolyl cis/trans
           isomerase EPVH) (hPar14) [Canis familiaris]
          Length = 131

 Score = 52.4 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ-------NLLKKS 253
           +I +A E      +      +++        G   ++    +   FQ             
Sbjct: 50  KIMEAMEKLKSGMRFNEVATQYSED-KARQGGDLGWMTRGSMVGPFQAAAFALPVSGPDK 108

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
              T  P  T+ G   I +  ++
Sbjct: 109 PVFTDPPIRTEFGYRIIMVEGRK 131


>gi|58584787|ref|YP_198360.1| parvulin-like peptidyl-prolyl isomerase, PPID [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
 gi|58419103|gb|AAW71118.1| Parvulin-like peptidyl-prolyl isomerase, PPID [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 602

 Score = 52.4 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/389 (9%), Positives = 92/389 (23%), Gaps = 81/389 (20%)

Query: 8   SLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI----------- 56
           ++ +F   +T   +  +     + ++ S          +  EVIT G+            
Sbjct: 2   NVKNFFTKVTAVILTCLLIFTGVGNFLSDENKKEEVARVGKEVITLGEYKLLYQSYGKQI 61

Query: 57  ------SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
                  +++  LK   +N  +E+  +  LI +       E       +           
Sbjct: 62  SGSDISEEQVKRLKYDLLNALIEQKLLFNLISDLGLVVGEESIKDHIRNTKYFQNDKGKF 121

Query: 111 RNTGLSAE--------------------DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
                                                             + I+ +  + 
Sbjct: 122 DKEKFHEALNSLHMTEGEYVAKLEKILPAIMFITSLFHDNYPVTFGEKIDEQIYKNRHQT 181

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK------- 203
             +      +  +    +    + +  Y      F  P+ +      + ++         
Sbjct: 182 RVVNIVKITQNAVTNVTEPDDRVLLDLYEKNKSHFYYPEYRTAQYISLGQKYFANQIQIS 241

Query: 204 ----------------------------DAEESRLRLPKDCNKLEKFASKIHDVSIGK-- 233
                                       +AE +R    +D    E+   K     + +  
Sbjct: 242 DREVDDIIKQQELKDQRDIFNLIFYTKEEAETARKEFEEDKVSFEQIVEKFGKTKLEETR 301

Query: 234 AQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEI--ALKAYLSA 290
              + +  L    +  +        +    +  G   I +     +  E    LK  +  
Sbjct: 302 INNITKDSLPEDMREKVFALKVGEVSEVLASSFGWHIIKVDSAHQISNENLVDLKKNIKL 361

Query: 291 QNTPTKIEKHEAEYVK----KLRSNAIIH 315
             T  K  +   +++     K+ + A I 
Sbjct: 362 VLTNQKSFEKVNDFINQVNYKIYNGATIE 390


>gi|297263527|ref|XP_002798823.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4-like [Macaca mulatta]
          Length = 197

 Score = 52.4 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 25/83 (30%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------LLKKS 253
           +I +A E      +      +++        G   ++    +   FQ             
Sbjct: 116 KIMEAVEKLKSGMRFNEVASQYSED-KARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDK 174

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
           +  T  P  T+ G   I +  ++
Sbjct: 175 RVFTDPPVKTKFGDHIIMVEGRK 197


>gi|195567999|ref|XP_002107543.1| GD17528 [Drosophila simulans]
 gi|194204953|gb|EDX18529.1| GD17528 [Drosophila simulans]
          Length = 166

 Score = 52.4 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/155 (7%), Positives = 31/155 (20%), Gaps = 1/155 (0%)

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            E +     +      +   Y                        + P   Q +  +   
Sbjct: 8   PEGWEKRTSRSTGMSYYLNMYTKESQWDQPTEPAKKAGGASAGVADAPDEVQCLHLLVKH 67

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
           +   R   +   +     +           +   +          ++        G    
Sbjct: 68  KGSRRPSSWREANITRTKEEAQLLLEVYRNKIVNQEATFEELARSYSDCSSAKRGGDLGK 127

Query: 237 LLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                +   F+    K + N  +    +  G+  I
Sbjct: 128 FGRGQMQAAFEEAAFKLNVNQLSGIVDSDSGLHII 162


>gi|77459306|ref|YP_348813.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           fluorescens Pf0-1]
 gi|77383309|gb|ABA74822.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Pseudomonas
           fluorescens Pf0-1]
          Length = 91

 Score = 52.4 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 6/77 (7%), Positives = 21/77 (27%), Gaps = 1/77 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-N 255
              +  +  ++            +KF++       G    +    +      ++ K    
Sbjct: 11  KTAEEAEKLKQRIANGEAFDVLAKKFSTCPSGKRGGDLGEVRPGQMVGAIDAVIFKKPLR 70

Query: 256 NTTNPYVTQKGVEYIAI 272
               P  ++ G   + +
Sbjct: 71  TVHGPIKSKFGYHLVQV 87


>gi|146307053|ref|YP_001187518.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina ymp]
 gi|145575254|gb|ABP84786.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           mendocina ymp]
          Length = 92

 Score = 52.4 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 8/77 (10%), Positives = 17/77 (22%), Gaps = 1/77 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-N 255
             +      ++             K +        G    +    +      ++ K    
Sbjct: 12  KTEAEAAALKKRIAAGEAFDMLARKHSICPSGKKGGDLGEVRPGQMVRAVDQVIFKKPLR 71

Query: 256 NTTNPYVTQKGVEYIAI 272
               P  TQ G   I +
Sbjct: 72  EVHGPVKTQFGYHLIQV 88


>gi|322496765|emb|CBZ31835.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 115

 Score = 52.4 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 20/77 (25%), Gaps = 1/77 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             V +  K  +              + +        G        ++   F++  K    
Sbjct: 36  EAVTELQKWRQSIEEGRVTFEEAARQRSDCSSYARGGDLGVFGPGEMMKPFEDATKSLEV 95

Query: 255 NNTTNPYVTQKGVEYIA 271
            + +   VT  GV  I 
Sbjct: 96  GHVSGIVVTDSGVHIIK 112


>gi|229590093|ref|YP_002872212.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Pseudomonas
           fluorescens SBW25]
 gi|312961365|ref|ZP_07775870.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           fluorescens WH6]
 gi|229361959|emb|CAY48859.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Pseudomonas
           fluorescens SBW25]
 gi|311285023|gb|EFQ63599.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
           fluorescens WH6]
          Length = 91

 Score = 52.4 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 5/77 (6%), Positives = 22/77 (28%), Gaps = 1/77 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
              +  +  ++   +        +K+++       G    +    +      ++ K    
Sbjct: 11  KTSEEAEQLKQRIAKGEAFDVLAKKYSTCPSGKRGGDLGEVRPGQMVGAIDAVIFKKPVK 70

Query: 257 TT-NPYVTQKGVEYIAI 272
               P  ++ G   + +
Sbjct: 71  VVHGPIKSKFGYHLVQV 87


>gi|303291045|ref|XP_003064809.1| peptidyl-prolyl cis-trans isomerase [Micromonas pusilla CCMP1545]
 gi|226453835|gb|EEH51143.1| peptidyl-prolyl cis-trans isomerase [Micromonas pusilla CCMP1545]
          Length = 280

 Score = 52.4 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 8/88 (9%), Positives = 24/88 (27%), Gaps = 1/88 (1%)

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV-SIGKAQYLLESDLHPQFQNLLKK 252
           +     +  +  E              +++       + G   ++        F++    
Sbjct: 84  DASDEAQLDELYERVVAGADDLATLAAEYSKCPSGKANGGLIGWIGRGQTVKPFEDAAFA 143

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           +         T  GV  + + D+R+   
Sbjct: 144 TPIGGVTRAKTTFGVHVVQVLDQREAPA 171


>gi|319938240|ref|ZP_08012637.1| hypothetical protein HMPREF9488_03473 [Coprobacillus sp. 29_1]
 gi|319806533|gb|EFW03191.1| hypothetical protein HMPREF9488_03473 [Coprobacillus sp. 29_1]
          Length = 311

 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/268 (8%), Positives = 71/268 (26%), Gaps = 16/268 (5%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVE 83
           +  +    S         +  +I+G+ I   DI +   L         L    + +LI  
Sbjct: 1   MLVLSGCSSSAVKEDGKYVVASIDGKNILADDIYE--KLSSSTAGKNALFTYLLDQLIT- 57

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
                    S +  +++ +        +N     ++    L+       +       +S+
Sbjct: 58  ---ANFPVTSDMKDNASNIVSNIEASYKNQYSDNDEAQKQLESALSSSGYESMDAYKESL 114

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
              +  ++F+ KY     +                   +++     +  +      +++ 
Sbjct: 115 IQSLQYSEFIKKYVKANFDEVFEDYY----KQEAPRYISMIKVSMSDPDKPTETETEKLN 170

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL------LESDLHPQFQNLLKKSQNNT 257
           + +               ++      + G    +       +S      +  L   +   
Sbjct: 171 EVKSLLKTDKGFAEIASSYSDDDSKSAKGNLGIIDSTSGLKDSYGEDVEKAALSLEKGKV 230

Query: 258 TNPYVTQKGVEYIAICDKRDLGGEIALK 285
           ++      G  ++          +  L+
Sbjct: 231 SDAIKGTNGYYFLYCTSTDKDTIKKDLE 258


>gi|227538586|ref|ZP_03968635.1| peptidylprolyl cis-trans isomerase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227241505|gb|EEI91520.1| peptidylprolyl cis-trans isomerase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 703

 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/127 (11%), Positives = 38/127 (29%), Gaps = 3/127 (2%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLE 239
           +     +           + +    +    +         +F+       + G       
Sbjct: 349 KASHILLNPTAEGGVDKAKAKADSIKNLIAKGEAFGPLAIQFSQDEGSKANGGDLGTFGR 408

Query: 240 SDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
             + P+F   + + +        +Q GV  + I   + +G    +KA +  +   +  E 
Sbjct: 409 GRMVPEFDKAVFEGKTGDVLIVNSQFGVHIVKIE--KQVGNSKVVKAAIVDKAISSGKET 466

Query: 300 HEAEYVK 306
            +A Y K
Sbjct: 467 IDAAYAK 473


>gi|170572126|ref|XP_001891992.1| Pin1-type peptidyl-prolyl cis-trans isomerase, BmPin1 [Brugia
           malayi]
 gi|158603155|gb|EDP39196.1| Pin1-type peptidyl-prolyl cis-trans isomerase, BmPin1 [Brugia
           malayi]
          Length = 186

 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/108 (11%), Positives = 30/108 (27%), Gaps = 1/108 (0%)

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
                +   +            I  +K   +  +    K  EE+  +  K  +  ++F+ 
Sbjct: 76  HCAHLLVKHSGSRRPSSWRSDVITRSKEDARKILAGYRKQIEEAXDKKSKLRDLAKEFSD 135

Query: 225 KIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIA 271
                  G   +     +   F++          ++   T  G+  I 
Sbjct: 136 CSSAKRGGDLGFFKRRQMQKSFEDAAFALGVGQLSDIVDTDSGLHLIY 183


>gi|262372262|ref|ZP_06065541.1| ppic-type ppiase domain-containing protein [Acinetobacter junii
           SH205]
 gi|262312287|gb|EEY93372.1| ppic-type ppiase domain-containing protein [Acinetobacter junii
           SH205]
          Length = 623

 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/317 (12%), Positives = 94/317 (29%), Gaps = 18/317 (5%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
                T +  ++  +     L    +V I  Y S    + +  ++NG+ I++ ++     
Sbjct: 1   MESFRTLIKGWLGKVLLVLFLTPLALVGIEGYFSGGNKADVAKSVNGQDISNKELETATK 60

Query: 62  LLKLQK-----------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
             K Q                +++ A+  LI  +L +Q+ EK GI+     +     Q  
Sbjct: 61  NYKDQYLSLVKGDESLLNLSLIQEKALDALIARSLLQQQAEKLGISLSDTQLEQMLAQQP 120

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                       + +         +  +A   +  D           +  +   ++ Q++
Sbjct: 121 SFQENGQFSQKLYENYLRSVGMTNQGLIAS--LRQDHALKMISSTLMDYALVSKSDLQQL 178

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS 230
            N+   +  +      + D K       Q+      + + +  +  N    +      + 
Sbjct: 179 ANLQTEQRTLHLASIKLDDYKKGITVSNQEIADYYNKHKNQFKQVANVDVDYVVLTPALL 238

Query: 231 IGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA 290
                   E++L   ++  + K Q +             +   D RD      L   + A
Sbjct: 239 PQANVAPSEAELQQAYKAFVDKQQKDVKREVK-----HILITTDSRDAATAQKLANDVYA 293

Query: 291 QNTPTKIEKHEAEYVKK 307
           +          A    +
Sbjct: 294 KIQSGMSFADAAAQFSE 310



 Score = 51.6 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 44/159 (27%), Gaps = 4/159 (2%)

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
                  E E+    +   +   ++   R V   +     ++    QK   D        
Sbjct: 240 QANVAPSEAELQQAYKAFVDKQQKDVK-REVKHILITTDSRDAATAQKLANDVYAKIQSG 298

Query: 213 PKDCNKLEKFASKIH-DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
               +   +F+         G  +          F N +        + P  TQ G   I
Sbjct: 299 MSFADAAAQFSEDPSSKTQGGLVEAYAPGVFSTDFDNAVNSLKNGQISKPVKTQYGYHII 358

Query: 271 AICD-KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
           A      D+    A K  L A+   TK     ++ V  L
Sbjct: 359 AANAPAIDIPSYEAEKPRLIAEVQKTKQANLFSDTVNSL 397


>gi|160913548|ref|ZP_02076239.1| hypothetical protein EUBDOL_00024 [Eubacterium dolichum DSM 3991]
 gi|158434100|gb|EDP12389.1| hypothetical protein EUBDOL_00024 [Eubacterium dolichum DSM 3991]
          Length = 334

 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/327 (9%), Positives = 83/327 (25%), Gaps = 29/327 (8%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIV----------SYKSWAMSSRIRTTINGEVITDGDISK 58
           +    +      V +IF    +           S K+      +    +   I   D+ K
Sbjct: 2   IEMLKRQWFVVLVALIFIGFAVFCIYDSNKDRVSGKTNDGKDVVAAMKDDTYIYADDLDK 61

Query: 59  RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
            +       +     +IAV   + + +K+ +  K+  +            +    G +  
Sbjct: 62  ILYNNYGSNLVSTKFQIAV---VSQAVKENDELKTQASNYKANFITQAESNMSMYGYTDL 118

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
                     +G ++                   M K  +  ++   +         ++ 
Sbjct: 119 KEYINAQLNPLGYDYDTLDEYAMLAVK-------MNKLTSDYVKAHLDTLFTDYYNAKQP 171

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYL 237
              + +     +        +++I+  E+            +K++       + G    +
Sbjct: 172 RTVSHILIKMADSQNPTEEEKEKIEKVEKELAAGKDFAEVAKKYSDDTGSKENGGYLGLM 231

Query: 238 LES-DLHPQFQNLLKK-SQNNTTNPYVTQK----GVEYIAICDK--RDLGGEIALKAYLS 289
            +       F+N   K      +           G   I + +     L  +  L+  + 
Sbjct: 232 DKDTQYVESFKNAAFKLKSGEVSEWVKEDNSSYKGWHMIKVHETDKDKLLKDKDLEDTIV 291

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                +         + +      I Y
Sbjct: 292 NAILNSDTSNAYGNAIWEASKKLDIKY 318


>gi|167756723|ref|ZP_02428850.1| hypothetical protein CLORAM_02264 [Clostridium ramosum DSM 1402]
 gi|167702898|gb|EDS17477.1| hypothetical protein CLORAM_02264 [Clostridium ramosum DSM 1402]
          Length = 332

 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/314 (7%), Positives = 85/314 (27%), Gaps = 30/314 (9%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSR--IRTTIN----GEVITDGDISKRIALLKLQKING 70
               V+  F +    +           +  ++N     + I   DI   +  +       
Sbjct: 7   AAALVVTSFLLTGCQNSSKTVKEDGKYVVASLNSGKKDKNIFADDIFNDV--ISTASGKS 64

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
                 +Q+L+ +     E  ++      + +  ++     +   +    +         
Sbjct: 65  SYFNAVLQQLMDQKFPIDEDMETDANETVDQIQTYYENQYGDNAETQLQTALSSSGFNSL 124

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
           D + +  + +      ++            +E   ++      T       +++     +
Sbjct: 125 DEYRENMVRVYQRCNFLL----------AYVEKNFDEVFDDYYTQASPREASLIKVSMTD 174

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYL-LESDLHPQFQN 248
                     ++ +            +  + ++   + + + GK   +   S L   F +
Sbjct: 175 VENPTADETAKLSEVTALLSSSKSFGDIAKDYSDDTNTNKNKGKLGIVDTTSGLSQTFGS 234

Query: 249 LLKKS-----QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAE 303
            ++          T+       G  ++ +        + ++K  +    +         +
Sbjct: 235 DVETKILALASGETSEAIKGTDGYYFVKVTS----TDKDSIKKEIKKDLSIDTPLIAYDK 290

Query: 304 YVKKL-RSNAIIHY 316
           Y+  +   +  + Y
Sbjct: 291 YMSYIVYQSYNVKY 304


>gi|301166280|emb|CBW25855.1| putative peptidyl-prolyl cis-trans isomerase [Bacteriovorax marinus
           SJ]
          Length = 100

 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 6/66 (9%), Positives = 19/66 (28%), Gaps = 1/66 (1%)

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
           E   +        ++ +        G     +   + P+ +  +     +  + P  ++ 
Sbjct: 31  EKLQQGEDFGELAKELSECNSSQKGGDLGLFVSGQVAPEVERAIYHLKIDEISEPVESEY 90

Query: 266 GVEYIA 271
           G   I 
Sbjct: 91  GFHIIQ 96


>gi|209547141|ref|YP_002279059.1| hypothetical protein Rleg2_5108 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209538385|gb|ACI58319.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 315

 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/253 (9%), Positives = 63/253 (24%), Gaps = 17/253 (6%)

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
            LI    +    ++  I    + V    V        +                      
Sbjct: 35  RLITPAPELATADREKIALTKDDVRQLAVTWLAQGRSAPTPDELRTLMDQKVTEEILFRE 94

Query: 139 AIQS---IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           A+        +++K     K   L  ++   ++         Y  R+  F++  +     
Sbjct: 95  AVSLGLDRDDEIIKRRLAQKMDFLAADLAKLEEPNNAQLEEWYAKRSDRFALSPHLSFRH 154

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKA-------QYLLESDLHPQF-- 246
            +       A           +   K A      S+                 +  +F  
Sbjct: 155 LYFSFDKHGAAAREAADAALPSVAGKPADSPEVGSVADPFMFRNFYGDATPEQMAKEFGP 214

Query: 247 ---QNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHE 301
              + L      +   P  +  G   I +       +     +   + +     +  + +
Sbjct: 215 DFAKALFTLKPGSWQGPIQSGYGWHLIWVDSIEPGRVPAFEEIAPAVKSAWLDERYSEVK 274

Query: 302 AEYVKKLRSNAII 314
           +  +K++RS  ++
Sbjct: 275 SNALKEMRSRYVV 287


>gi|312282999|dbj|BAJ34365.1| unnamed protein product [Thellungiella halophila]
          Length = 119

 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/114 (9%), Positives = 28/114 (24%), Gaps = 1/114 (0%)

Query: 159 LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
              ++ A+   +K+   R                  +  V++     E+         + 
Sbjct: 3   SRDQVKASHILIKHQGSRRKASWKDPEGKIIMTTTREAAVEQLKSIREDIVSGKANFEDV 62

Query: 219 LEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
             + +        G         +   F+         + ++   T  GV  I 
Sbjct: 63  ATRVSDCSSAKRGGDLGPFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIK 116


>gi|195152313|ref|XP_002017081.1| GL21710 [Drosophila persimilis]
 gi|194112138|gb|EDW34181.1| GL21710 [Drosophila persimilis]
          Length = 130

 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------L 249
             Q +I +A E      K       ++        G   + +   +   FQ+        
Sbjct: 45  EKQGKIMEAMEKLKAGQKFPEVATAYSED-KARQGGDLGWQIRGAMVGPFQDAAFALPIS 103

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKR 276
              +   T  P  T+ G   I +  K+
Sbjct: 104 NVNNPVYTDPPVKTKFGYHIIMVEGKK 130


>gi|153872834|ref|ZP_02001612.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Beggiatoa sp. PS]
 gi|152070703|gb|EDN68391.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Beggiatoa sp. PS]
          Length = 253

 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 69/231 (29%), Gaps = 41/231 (17%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +        +F  V  ++    A  +     INGEV+T  D    +     Q       +
Sbjct: 1   MFKLSIRTCLFSGVLFMTVAVHATPNEPLAIINGEVLTQQDYDDYVKARTTQTQRRATPE 60

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
           I ++EL+   L KQ+  K  +    + +                     +    +     
Sbjct: 61  ILLEELVQRELLKQDALKKKLEQHPDFIRKLTD----------------MRNSLLVAMAI 104

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
              L   ++    +K ++  +  ++E+              +EY IR +L          
Sbjct: 105 HDDLEKHALDEAALKKEYDKQIAHVEV-------------PKEYQIRHIL---------- 141

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHP 244
                ++ K       +        ++ +  K      G+  ++ +  + P
Sbjct: 142 -VETAEQAKAIIAELEQGKAFGELAKEKSIDKPSANKAGELGWITKQQIDP 191


>gi|257866945|ref|ZP_05646598.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           casseliflavus EC30]
 gi|257873278|ref|ZP_05652931.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           casseliflavus EC10]
 gi|257877021|ref|ZP_05656674.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           casseliflavus EC20]
 gi|257801001|gb|EEV29931.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           casseliflavus EC30]
 gi|257807442|gb|EEV36264.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           casseliflavus EC10]
 gi|257811187|gb|EEV40007.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           casseliflavus EC20]
          Length = 344

 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/293 (10%), Positives = 70/293 (23%), Gaps = 37/293 (12%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +L+    + + +  +   SS    T+ G  IT  D   +              + 
Sbjct: 1   MKKKLLLVAVSAMSLFALAACGNSSEEIATMKGGKITVQDFYDKAKTSSEN-------QQ 53

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           A++++I   + K   EK G       ++  F   A   G S    S+          +  
Sbjct: 54  ALRQMI---VLKVFNEKYGDDVTEEMIDEQFNNVAEQYGGSDSFESTLTAS-----GYTV 105

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    +      ++          + E+             + +                
Sbjct: 106 KSYRAELKEQLALREGLKANMDITDEEMKTAWDSFHPEVEAQIIKVAS------------ 153

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL--LKKS 253
                +    E  +          EK          G  ++   S   P           
Sbjct: 154 -EDDAKDVLEEAKKDDADFGEIAKEKSTDAATKEDGGTIKFDSTSTAVPNEVKTAAFDLK 212

Query: 254 QNNTTNPYVTQKG------VEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEK 299
               +                 + +   +D G ++   K  L+     T +  
Sbjct: 213 DGEISEVISATNTSTYTTEYYIVKMVKNQDKGNDMDKYKDELTEIAQNTLLND 265


>gi|118784241|ref|XP_313593.3| AGAP004321-PA [Anopheles gambiae str. PEST]
 gi|116128413|gb|EAA09299.3| AGAP004321-PA [Anopheles gambiae str. PEST]
          Length = 167

 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 8/107 (7%), Positives = 27/107 (25%), Gaps = 1/107 (0%)

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
              Q    +       R   +   +     +  ++      ++ +          ++++ 
Sbjct: 57  HEVQCAHLLVKHNKSRRPSSWREENITRSKEEALEILESYRKKIQSNEATLQELAQRYSD 116

Query: 225 KIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                  G         +   F++        + ++   T  GV  I
Sbjct: 117 CSSAKRGGDLGMFKRGMMQKPFEDAAFALKVGDMSDIVDTDSGVHLI 163


>gi|281355162|ref|ZP_06241656.1| hypothetical protein Vvad_PD3268 [Victivallis vadensis ATCC
           BAA-548]
 gi|281318042|gb|EFB02062.1| hypothetical protein Vvad_PD3268 [Victivallis vadensis ATCC
           BAA-548]
          Length = 314

 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/312 (4%), Positives = 79/312 (25%), Gaps = 25/312 (8%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           ++ +  ++++       +   +     +  T++   I   ++     L   ++     ++
Sbjct: 6   IIVSACIMLVAAGAEESAAGPFDFLPEVVATVDSVPIRRDEL--AAQLTLSRQAPPNADR 63

Query: 75  IAVQEL----IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
             +  L    + E +    I +              + + +            +      
Sbjct: 64  AVLARLMRQAVEERIYLDIIRQLLAEQRIVPDEASALAYLKEMNALLPRGIPGVPPAEFA 123

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
               +    + +      K  +       + E+    +  +   +    +   +  +  +
Sbjct: 124 RLAAEPQFQLNAALHRYFKQCYPDWVKVDDREVENAYRLDQQRFLLPEKLELGVIEVERS 183

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK---IHDVSIGKAQYLLESDLHPQFQ 247
           +   +  ++           +         + +         ++ +   +  + +     
Sbjct: 184 RDNARETIEDAR----ARLRQGENFDRVAAEVSPDGVKSSAETVMELFRISGAKIP---- 235

Query: 248 NLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYV 305
                     +    +      + + ++             YL  Q    K+ +     +
Sbjct: 236 ------VRGVSEVLESGDRFLLLMVRERIPARFVPLKDAAPYLREQLAAAKVGRALELLL 289

Query: 306 KKLRSNAIIHYY 317
           ++  +   I Y+
Sbjct: 290 RRELARRDIRYF 301


>gi|224097152|ref|XP_002310854.1| predicted protein [Populus trichocarpa]
 gi|222853757|gb|EEE91304.1| predicted protein [Populus trichocarpa]
          Length = 122

 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 8/75 (10%), Positives = 18/75 (24%), Gaps = 1/75 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQN 255
            + +     E+      K  +   + +        G         +   F+         
Sbjct: 44  AISELKAIREDIVSGKAKFEDVASRISDCSSAKRGGDLGPFGRGQMQKPFEETTFSLKVG 103

Query: 256 NTTNPYVTQKGVEYI 270
             ++   T  GV  I
Sbjct: 104 EISDIVDTDSGVHII 118


>gi|91215920|ref|ZP_01252889.1| PPIC-type PPIASE domain protein [Psychroflexus torquis ATCC 700755]
 gi|91185897|gb|EAS72271.1| PPIC-type PPIASE domain protein [Psychroflexus torquis ATCC 700755]
          Length = 643

 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/265 (9%), Positives = 82/265 (30%), Gaps = 12/265 (4%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I++G++++ +    +++  G          I+  L K E + + +   +  +        
Sbjct: 102 ISNGEVTEAM----VKEAYGRTRTEVRASHILLNLSKYEEDTAKVYNRALVLMKRAENGE 157

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
               L+ ++      ++  G+ ++     +   + DV     + +               
Sbjct: 158 DFGMLAKQNSEDPSAQRNEGNLNWFNTFKMVYEFEDVAYKLDVGEISKPVRSDFGYHIIK 217

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDV 229
           K               +  NK   +   ++  K   + +       +  ++++       
Sbjct: 218 KTGERASKGKLKTAHIMVVNKDSLRDPKEQIDKIYVKVK-SGDDFHDLAKQYSDDTDTAS 276

Query: 230 SIGKAQYLLESDLHP---QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA 286
             G         L+    + +    ++  + T P+ T+ G   + + +   +     +K 
Sbjct: 277 KGGYVAAFGIGGLNSKTYENEAFQLENIGDYTEPFQTKFGWHIVKLIEVEPIQSFQDIKE 336

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSN 311
            L  +    K        V K++ +
Sbjct: 337 DLKKRL---KSSSRSKLLVSKIKED 358



 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/215 (8%), Positives = 53/215 (24%), Gaps = 8/215 (3%)

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
           N +     + EL  +   +          +S  V            L             
Sbjct: 19  NAQDSNEVLFEL-DDESYEVGPFVESFQKNSELVASTKEDLEDYLRLYINFRLKIKSAYD 77

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
              +    Y    S +   + + ++      E  +     + +       +  + +    
Sbjct: 78  QELDTLNSYQKEFSKYYKQIADSYISNGEVTEAMVKEAYGRTRTE-----VRASHILLNL 132

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV-SIGKAQYLLESDLHPQFQ 247
               ++   V  R     +            ++ +       + G   +     +  +F+
Sbjct: 133 SKYEEDTAKVYNRALVLMKRAENGEDFGMLAKQNSEDPSAQRNEGNLNWFNTFKMVYEFE 192

Query: 248 NLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           ++  K      + P  +  G   I    +R   G+
Sbjct: 193 DVAYKLDVGEISKPVRSDFGYHIIKKTGERASKGK 227


>gi|315635433|ref|ZP_07890699.1| conserved hypothetical protein [Arcobacter butzleri JV22]
 gi|315480191|gb|EFU70858.1| conserved hypothetical protein [Arcobacter butzleri JV22]
          Length = 274

 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 88/282 (31%), Gaps = 29/282 (10%)

Query: 36  WAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGI 95
            +M + +   +N E IT  DI + +       +N   +  AV  LI + L  Q +++  I
Sbjct: 17  ASMVNGVAILVNEEPITLYDIERTM------VVNKIPKNEAVSYLIDKILYDQLVQEYNI 70

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
           T D   VN +  + A + G+    F + + ++    + F+       I   +V+     +
Sbjct: 71  TADIFEVNDYIEKLANSNGMDIYAFKAIVKQEYPDYSVFENEAKNTVIRQKLVQKLVKGQ 130

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
                 E                        +   K +N+    K     + S       
Sbjct: 131 LAIATDED---------------------MQLYYEKNRNKYLTAKTFDVTQYSSTSKEAL 169

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK 275
               +       +V     +   E         L     N+ T  +   K      I  K
Sbjct: 170 MEVAKNPIIIPSEVQRTSLKLNTEDIQAQLQYLLNGTKVNSFTPIFTANKQYVTFFITKK 229

Query: 276 RDLGG--EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                    ++KA +       + +K+  +Y +K +  A I 
Sbjct: 230 EGTAPLSYESVKARIFNDIMMNREQKYLKDYFEKQKLIADIK 271


>gi|195049626|ref|XP_001992755.1| GH24043 [Drosophila grimshawi]
 gi|193893596|gb|EDV92462.1| GH24043 [Drosophila grimshawi]
          Length = 165

 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 7/91 (7%), Positives = 18/91 (19%), Gaps = 1/91 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R   +   +     +           +   R          ++        G        
Sbjct: 71  RPSSWREENITRTKEEAQMLLEIYRNKIVNREATFEELARSYSDCSSAKRGGDLGKFGRG 130

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            +   F+           ++   T  G+  I
Sbjct: 131 QMQAPFEKAAFALKVGQLSDIVDTDSGLHII 161


>gi|2739197|gb|AAC49984.1| peptidyl-prolyl cis/trans isomerase [Emericella nidulans]
 gi|259479663|tpe|CBF70093.1| TPA: Peptidyl-prolyl cis/trans isomerase
           [Source:UniProtKB/TrEMBL;Acc:O42735] [Aspergillus
           nidulans FGSC A4]
          Length = 176

 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 8/164 (4%), Positives = 32/164 (19%), Gaps = 1/164 (0%)

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
                  S      F                ++++   +          +         +
Sbjct: 10  WEVRHSNSKNLPYYFNPATRESRWEPPADTDMETLKMYMATYHSGAATYHEAPSQEGKIR 69

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +       R   +   +     +   +      E       +  +     +     
Sbjct: 70  CSHLLVKHRDSRRPSSWREAEITRTKEEAREILRGHQERIMRGEIRLGDLAMSESDCSSA 129

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
              G   +    ++  +F+           ++   +  G+  I 
Sbjct: 130 RKKGDLGFFGRGEMQKEFEEAAFALQPGQVSDIVESGSGLHLIE 173


>gi|255026336|ref|ZP_05298322.1| hypothetical protein LmonocytFSL_08280 [Listeria monocytogenes FSL
           J2-003]
          Length = 247

 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/247 (10%), Positives = 72/247 (29%), Gaps = 31/247 (12%)

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
              VQ+L  + + + +   +    ++                  E +    +     +N 
Sbjct: 3   NEVVQQLTFKKILEDKYTVTEKEVNAEY------------KKYEEQYGDSFESTLSSNNL 50

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
            K        +  +V+          E ++ A  +        +  +R +L         
Sbjct: 51  TKTSFKENLEYNLLVQKATEANMDVSESKLKAYYKTW----EPDITVRHIL--------- 97

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLK- 251
                +   K+ +       K  +  +++++      + G        ++   F+     
Sbjct: 98  --VDDEATAKEIQTKLKNGEKFTDLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYA 155

Query: 252 -KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS-AQNTPTKIEKHEAEYVKKLR 309
            +++++ +    +  G   I +  K + G     KA +  A        ++    +KK  
Sbjct: 156 LENKDDVSGIVKSTYGYHLIQLVKKTEKGTYAKEKANVKAAYIKSQLTSENMTAALKKEL 215

Query: 310 SNAIIHY 316
             A I  
Sbjct: 216 KAANIDI 222


>gi|296825238|ref|XP_002850783.1| peptidyl-prolyl cis-trans isomerase pin4 [Arthroderma otae CBS
           113480]
 gi|238838337|gb|EEQ27999.1| peptidyl-prolyl cis-trans isomerase pin4 [Arthroderma otae CBS
           113480]
          Length = 130

 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 27/85 (31%), Gaps = 6/85 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               + ++A E      K      +F+        G   + +   L   F+ +    + +
Sbjct: 47  EKHSKKEEALEKLRSGAKFDEVAREFSED-KARQGGSLGWKVRGSLDAAFEKVAYDLEPS 105

Query: 257 TTN-P----YVTQKGVEYIAICDKR 276
           TT  P      T  G   I +  ++
Sbjct: 106 TTGNPKYVEVKTGFGYHIIMVEGRK 130


>gi|315928902|gb|EFV08160.1| surA N-terminal domain protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 186

 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 59/186 (31%), Gaps = 7/186 (3%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           I+       S  S    + I   ++ E IT  DI + +  LK+          A+  LI 
Sbjct: 4   ILLSFAFFASLASANTINAIAVVVDKEPITTYDIDQTMKALKID------RNKALGVLIN 57

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           E ++  ++++ GI  +   ++    +       +   F + L  +      F+       
Sbjct: 58  EKMEISQMKQLGIVVNDLELDDAINKMLAQNKTTLNAFKANLKSKNQSYEQFRTNFKKDL 117

Query: 143 IWPDVVKNDF-MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
               + +    M K    +       ++ K+       I   ++   + +        K+
Sbjct: 118 EKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANIYLSNNPQTLENIKNTKK 177

Query: 202 IKDAEE 207
                +
Sbjct: 178 QSLNHK 183


>gi|88811164|ref|ZP_01126420.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrococcus mobilis
           Nb-231]
 gi|88791703|gb|EAR22814.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrococcus mobilis
           Nb-231]
          Length = 250

 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/266 (11%), Positives = 71/266 (26%), Gaps = 27/266 (10%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              I+ E I+       +  LKL      L    ++EL+ E L     +++GI      +
Sbjct: 3   VAKIDEETISA---DGLVKWLKLNGTFDNL----IEELVSEKLTVHAAKRAGINITLEEI 55

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
              F Q  R  GL     +    +Q        +     +++ + +  +        +  
Sbjct: 56  QERFDQIRRVEGLHRAKDTQEFLQQLGVSLDDFEAYISDTLYKEKMLEEVRR-----DEA 110

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           I               +   V+               K  +    +            + 
Sbjct: 111 IQEYFSLNSPKFEGIEISHIVV-----------DSENKAREILSLAEEEPDMFAELAREH 159

Query: 223 A-SKIHDVSIGKAQYLLESDLHPQFQ-NLLKKSQNNTTNPYVTQKG--VEYIAICDKRDL 278
           +       + G    +L  +L  + +  +   S      P+ T      E   +  +   
Sbjct: 160 SLDDDTKHNGGLVGKVLRGELQDEIEAKVFNASAGELLGPFQTPDELFYEIFKVEARHPA 219

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEY 304
             +   +  +        +E    E+
Sbjct: 220 ILDTETEKEVRRLVYRAWLEARAQEH 245


>gi|189206624|ref|XP_001939646.1| peptidyl-prolyl cis-trans isomerase ssp1 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187975739|gb|EDU42365.1| peptidyl-prolyl cis-trans isomerase ssp1 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 194

 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/170 (9%), Positives = 36/170 (21%), Gaps = 3/170 (1%)

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
              +             +   +         + L          K      +   E +I 
Sbjct: 22  EVRRSNTKNLPYYFHAQTKDSRWEPPAGTDPERLKTYMAANHSSKGVAPAAFAPTEGKIR 81

Query: 165 --ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                 K ++           +    +   +       +IK  EE               
Sbjct: 82  CAHLLVKHRDSRRPASWREPKITRSIEEARELIRNYHAQIKAYEEGGDNAKSLSELATTE 141

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
           +        G   +    D+  +F+       +   ++   T  GV  I 
Sbjct: 142 SDCSSARKGGDLGFFGRGDMQKEFEQAAFALEKGQVSDMVETASGVHLIQ 191


>gi|109148909|ref|XP_001119408.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4-like, partial [Macaca mulatta]
          Length = 138

 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 25/83 (30%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------LLKKS 253
           +I +A E      +      +++        G   ++    +   FQ           + 
Sbjct: 57  KIMEAVEKLKSGMRFNEVASQYSED-KARQGGDLGWMTRGSMVGPFQEAAFALPVSGMEK 115

Query: 254 QNNTTNPYVTQKGVEYIAICDKR 276
              T  P  T+ G   I +  ++
Sbjct: 116 PVFTDPPVKTKFGDHIIMVEGRK 138


>gi|294898700|ref|XP_002776345.1| peptidylprolyl isomerase, putative [Perkinsus marinus ATCC 50983]
 gi|239883255|gb|EER08161.1| peptidylprolyl isomerase, putative [Perkinsus marinus ATCC 50983]
          Length = 84

 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 8/69 (11%), Positives = 18/69 (26%), Gaps = 1/69 (1%)

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPY 261
              E+ +             +      + G   Y    ++   F+           + P 
Sbjct: 12  YMIEKLKADKSLFPEMAMARSDCGSYKNGGDLGYFDRGEMQRPFEEAAFSLEVGELSGPV 71

Query: 262 VTQKGVEYI 270
            T+ GV  +
Sbjct: 72  ETESGVHVL 80


>gi|237734442|ref|ZP_04564923.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229382262|gb|EEO32353.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 332

 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/314 (7%), Positives = 85/314 (27%), Gaps = 30/314 (9%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSR--IRTTIN----GEVITDGDISKRIALLKLQKING 70
               V+  F +    +           I  ++N     + I   DI   +  +       
Sbjct: 7   AAALVVTSFLLTGCQNSSKTVKEDGKYIVASLNSGKKDKNIFADDIFNDV--ISTASGKS 64

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
                 +Q+L+ +     E  ++      + +  ++     +   +    +         
Sbjct: 65  SYFNAVLQQLMDQKFPIDEDMETDANETVDQIQTYYENQYGDNAETQLQTALSSSGFNSL 124

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
           D + +  + +      ++            +E   ++      T       +++     +
Sbjct: 125 DEYRENMVRVYQRCNFLL----------AYVEKNFDEVFDDYYTQASPREASLIKVSMTD 174

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYL-LESDLHPQFQN 248
                     ++ +            +  + ++   + + + GK   +   S L   F +
Sbjct: 175 VENPTADETAKLSEVTALLSSSKSFGDIAKDYSDDTNTNKNKGKLGIVDTTSGLSQTFGS 234

Query: 249 LLKKS-----QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAE 303
            ++          T+       G  ++ +        + ++K  +    +         +
Sbjct: 235 DVETKILALASGETSEAIKGTDGYYFVKVTS----TDKDSIKKEIKKDLSIDTPLIAYDK 290

Query: 304 YVKKL-RSNAIIHY 316
           Y+  +   +  + Y
Sbjct: 291 YMSYIVYQSYNVKY 304


>gi|327353064|gb|EGE81921.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Ajellomyces dermatitidis
           ATCC 18188]
          Length = 198

 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/192 (6%), Positives = 39/192 (20%), Gaps = 1/192 (0%)

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I+     ++              +              + ++   +     +     L +
Sbjct: 4   IISDKSNEQCLPHLQDESGLPPGWEVRHSNSKNLPYYFNPTTKESRWEPPADTDTDKLKV 63

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
                     D     G     +    +    +       R   +   +     +  ++ 
Sbjct: 64  YMAQHHSGPADRYTLGGAGGGPVEGKIRASHLLIKHRGSRRPSSWRESEITRSKEEALEI 123

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN 259
                E  R       +     +        G   +    ++  +F+           + 
Sbjct: 124 LRGHEERIRAGETTLGDIAMSESDCSSARKKGDLGFFGRGEMQAEFEEAAFALKPGQVSG 183

Query: 260 PYVTQKGVEYIA 271
              T  GV  I 
Sbjct: 184 IVETASGVHLIE 195


>gi|295657789|ref|XP_002789460.1| hypothetical protein PAAG_08629 [Paracoccidioides brasiliensis
           Pb01]
 gi|226283794|gb|EEH39360.1| hypothetical protein PAAG_08629 [Paracoccidioides brasiliensis
           Pb01]
          Length = 132

 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 6/85 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               + ++A E      K      +F+        G   + +   L   F+      + +
Sbjct: 49  EKHSKKEEALEKLRNGAKFDEVAREFSED-KARQGGSLGWKIRGSLDASFEKAAYDLEPS 107

Query: 257 TTN-P----YVTQKGVEYIAICDKR 276
           TT  P      T  G   I +  ++
Sbjct: 108 TTGNPKWTEVKTGFGYHIIMVEGRK 132


>gi|149199099|ref|ZP_01876139.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase)
           [Lentisphaera araneosa HTCC2155]
 gi|149137888|gb|EDM26301.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase)
           [Lentisphaera araneosa HTCC2155]
          Length = 92

 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 1/77 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-N 255
             ++  ++  E             K+++       G    L    L P    ++ K + N
Sbjct: 12  KQKRDAEEILEKLKSGADFAKFARKYSTCNSAKRGGDLGELRPGQLVPAINQIVFKKELN 71

Query: 256 NTTNPYVTQKGVEYIAI 272
               P  ++ G   + +
Sbjct: 72  VIHGPVKSKFGFHLVEV 88


>gi|312597019|pdb|2RQS|A Chain A, 3d Structure Of Pin From The Psychrophilic Archeon
           Cenarcheaum Symbiosum (Cspin)
          Length = 97

 Score = 52.0 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 8/68 (11%), Positives = 19/68 (27%), Gaps = 2/68 (2%)

Query: 206 EESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVT 263
           +E      K     ++ +         G   Y     +   F++   +      + P  +
Sbjct: 27  QERLKAGEKFGKLAKELSIDGGSAKRDGSLGYFGRGKMVKPFEDAAFRLQVGEVSEPVKS 86

Query: 264 QKGVEYIA 271
           + G   I 
Sbjct: 87  EFGYHVIK 94


>gi|320586255|gb|EFW98934.1| peptidyl-prolyl cis-trans isomerase [Grosmannia clavigera kw1407]
          Length = 139

 Score = 51.6 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 6/87 (6%)

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ 254
                K+ +   + R    K  +    F+        G   + +   L P F+ +     
Sbjct: 54  CEKHAKKEEALAKIRSEGAKFDDVARTFSED-KARQGGTLGWKVRGSLDPAFEEVAFALP 112

Query: 255 NNTT-NPY----VTQKGVEYIAICDKR 276
            +TT +P      T  G   I +  ++
Sbjct: 113 ASTTVSPVVGEAKTSFGYHIIMVEGRK 139


>gi|93140533|sp|Q4I665|PIN4_GIBZE RecName: Full=Peptidyl-prolyl cis-trans isomerase PIN4;
           Short=PPIase PIN4; AltName: Full=Parvulin-14;
           Short=Par14
          Length = 133

 Score = 51.6 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 6/85 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               + ++A        K      +++        G   +  +  L P+F+ +    + +
Sbjct: 50  EKHAKKEEALAKLNDGVKFDEVAREYSED-KARQGGSLGWKTKGSLDPKFEEVAFALETS 108

Query: 257 TT-NP----YVTQKGVEYIAICDKR 276
           TT +P      T  G   I +  ++
Sbjct: 109 TTNSPKFVEVKTGFGYHIIMVEGRK 133


>gi|28870210|ref|NP_792829.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213970608|ref|ZP_03398734.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           tomato T1]
 gi|301386316|ref|ZP_07234734.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. tomato Max13]
 gi|302060898|ref|ZP_07252439.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. tomato K40]
 gi|302133972|ref|ZP_07259962.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|28853456|gb|AAO56524.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213924605|gb|EEB58174.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           tomato T1]
 gi|330968409|gb|EGH68669.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331015438|gb|EGH95494.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 91

 Score = 51.6 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 6/77 (7%), Positives = 21/77 (27%), Gaps = 1/77 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
              +  +  ++   +        +K +S       G    +    +      ++ K    
Sbjct: 11  KTAEEAEQLKQRIAKGEAFDVLAKKHSSCPSGKRGGDLGEVRPGQMVGAIDQVIFKKPLR 70

Query: 257 TT-NPYVTQKGVEYIAI 272
               P  ++ G   + +
Sbjct: 71  VVHGPIKSKFGYHLVQV 87


>gi|15227956|ref|NP_179395.1| PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1);
           peptidyl-prolyl cis-trans isomerase [Arabidopsis
           thaliana]
 gi|38258260|sp|Q9SL42|PIN1_ARATH RecName: Full=Peptidyl-prolyl cis-trans isomerase Pin1;
           Short=PPIase Pin1; AltName: Full=PIN1At; AltName:
           Full=Rotamase Pin1
 gi|13430812|gb|AAK26028.1|AF360318_1 putative peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana]
 gi|4406814|gb|AAD20122.1| putative peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana]
 gi|15810551|gb|AAL07163.1| putative peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana]
 gi|15982815|gb|AAL09755.1| At2g18040/T27K22.9 [Arabidopsis thaliana]
 gi|21537274|gb|AAM61615.1| putative peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana]
 gi|330251625|gb|AEC06719.1| Peptidyl-prolyl cis-trans isomerase Pin1 [Arabidopsis thaliana]
          Length = 119

 Score = 51.6 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 8/77 (10%), Positives = 18/77 (23%), Gaps = 1/77 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             V++     E+             + +        G         +   F+        
Sbjct: 40  AAVEQLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKV 99

Query: 255 NNTTNPYVTQKGVEYIA 271
            + ++   T  GV  I 
Sbjct: 100 GDISDIVDTDSGVHIIK 116


>gi|154250196|ref|YP_001411021.1| hypothetical protein Fnod_1521 [Fervidobacterium nodosum Rt17-B1]
 gi|154154132|gb|ABS61364.1| hypothetical protein Fnod_1521 [Fervidobacterium nodosum Rt17-B1]
          Length = 328

 Score = 51.6 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/334 (10%), Positives = 89/334 (26%), Gaps = 44/334 (13%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K +  + VL+I   V             I   +NG  IT  + ++   + KL       
Sbjct: 1   MKKVCIFLVLLISFFVF--------AQQEIVAVVNGRSITMDEWNREANVQKLLLEIQNS 52

Query: 73  EK---------------------IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
            +                       +  LI +    Q  E   +  D  TV        +
Sbjct: 53  NETFYQILMTTQEGLVLIEKYKLKVLDTLIRKIAFIQFAESLKVQPDPQTVKNDVDNEIK 112

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
              +  +   + L+   +     +     Q ++  + +   +         +       +
Sbjct: 113 KMLVDLKMTETQLNDYLMQLGMGQLEDFRQKLY--LQRTYSLSLANVYTYYLKNATVSEE 170

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
            I       +          L       K + D+    +       ++ K  +    V+ 
Sbjct: 171 EIKAYYEKNKAKYTVPTQYDLLIFKAKDKAMADSIRQDVAKNISVEEISKKYNLSPHVNG 230

Query: 232 ----GKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALK 285
               G  + + ++     +  +   S+       +       I + D +         +K
Sbjct: 231 LVTQGDMEKIPQN----LWVIITSVSKGTILPAQLINNEYYIIRVRDVKPGSQKSLDEVK 286

Query: 286 AYLSAQNTPTKIEK---HEAEYVKKLRSNAIIHY 316
             +  +   TK ++     A+  +     + I  
Sbjct: 287 EEIKKELVSTKQKEVKDKVAKDFEDFLKKSKIEI 320


>gi|146077632|ref|XP_001463318.1| PPIase [Leishmania infantum JPCM5]
 gi|134067402|emb|CAM65675.1| putative PPIase [Leishmania infantum JPCM5]
          Length = 115

 Score = 51.6 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 20/77 (25%), Gaps = 1/77 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             V +  K  +              + +        G        ++   F++  K    
Sbjct: 36  EAVTELQKWRQSIEEGRVTFEEAARQRSDCSSYARGGDLGVFGPGEMMKSFEDATKSLEV 95

Query: 255 NNTTNPYVTQKGVEYIA 271
            + +   VT  GV  I 
Sbjct: 96  GHVSGIVVTDSGVHIIK 112


>gi|297832446|ref|XP_002884105.1| PIN1AT [Arabidopsis lyrata subsp. lyrata]
 gi|297329945|gb|EFH60364.1| PIN1AT [Arabidopsis lyrata subsp. lyrata]
          Length = 119

 Score = 51.6 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 8/77 (10%), Positives = 18/77 (23%), Gaps = 1/77 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             V++     E+             + +        G         +   F+        
Sbjct: 40  AAVEQLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLGPFGRGQMQKPFEEATYALKV 99

Query: 255 NNTTNPYVTQKGVEYIA 271
            + ++   T  GV  I 
Sbjct: 100 GDISDIVDTDSGVHIIK 116


>gi|256819263|ref|YP_003140542.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
           ochracea DSM 7271]
 gi|256580846|gb|ACU91981.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
           ochracea DSM 7271]
          Length = 705

 Score = 51.6 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/255 (10%), Positives = 62/255 (24%), Gaps = 17/255 (6%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIA------------VQELIVETLKKQEIEKSGITFD 98
           +TD +I   I   + Q        I             ++      LK  + E    +  
Sbjct: 213 VTDSEIQDYIKKHEKQFKQEAYRNIQYIVVSEKPSQTDIETEKESLLKLLQPEVVFNSKT 272

Query: 99  SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGN 158
           +           +N     +  S         +    +     +++   V   F     +
Sbjct: 273 NKNDTIAGFAKTKNIKDFVDRHSDVPYDSTFVNKDNLRSSYADTLFNLPVGKVFGPYEED 332

Query: 159 LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
             +++     K     V+   I                  ++    AEE   +       
Sbjct: 333 GSLKLSRMIAKQPGGAVKASHILIAYTGSQAATPNTTRTKEEAKAKAEELLAQAKAAGAD 392

Query: 219 LEKFASKIHDVSI-----GKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAIC 273
             + A +  +        G   +  +  +    +     +   T     T  G   + + 
Sbjct: 393 FAQLARENSEEPGAVYSAGDLGFFSKGAMVKPLEEFAFNNAVGTIGIVETAFGFHVVKVT 452

Query: 274 DKRDLGGEIALKAYL 288
           DK +      +   +
Sbjct: 453 DKAEAVNIATISRKV 467


>gi|253700332|ref|YP_003021521.1| hypothetical protein GM21_1709 [Geobacter sp. M21]
 gi|251775182|gb|ACT17763.1| conserved hypothetical protein [Geobacter sp. M21]
          Length = 526

 Score = 51.6 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 41/132 (31%), Gaps = 11/132 (8%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHP--------QF 246
             V++++ + + + +   K    L++ A         G   Y     +          + 
Sbjct: 389 AQVEQKLLEVKGAEVAKKKAEEALQQLAKGGAAAKETGNFGYSPAGAIPTVGTSPELMEA 448

Query: 247 QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA--YLSAQNTPTKIEKHEAEY 304
              L  +      P    +    + + ++ +       KA   +     P K +    ++
Sbjct: 449 AFALTPASPVAKQPVKVGERWYAVKLKNRVEAPTTDFAKASATIKQALLPKKQQDELDKW 508

Query: 305 VKKLRSNAIIHY 316
           +K LR  A I  
Sbjct: 509 LKGLRDKAKIEI 520



 Score = 45.8 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/259 (12%), Positives = 67/259 (25%), Gaps = 30/259 (11%)

Query: 1   MTSKVF-TSLSDFIKLLTTY----FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD 55
           M   +     S  IK++       FV  IF +       S         T++G  I+  D
Sbjct: 1   MLGIMRKYKQSILIKIVFVVIVLSFVGTIFLVWGRGGEGSADGPGGYAATVDGTKISMDD 60

Query: 56  ISKRIALLKLQ-------------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             K     +               +    L+K  +  ++   L  +E +K GI  + + V
Sbjct: 61  FQKNYYRTRNLYEQIYGRSLTPEMEKQMGLKKTTIGSMVDNVLTLKEAKKMGIKVNKDEV 120

Query: 103 NYF---FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
                       N       +   L    +    F++      +     +N    K    
Sbjct: 121 AAEIAKIPSFQNNGAFDFNLYQQTLKANRVTPKEFEETQEQDILVQKA-RNKVKEKATVT 179

Query: 160 EMEIPANKQKMKNI--------TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
           + ++    +K  +         +  +      L     N        Q +  +       
Sbjct: 180 DADVMQEFKKQNDKVNLQYVSFSPADVKGSIKLTDAELNVYLQDHQAQFKTPEQVSIAYT 239

Query: 212 LPKDCNKLEKFASKIHDVS 230
           L        K +    +  
Sbjct: 240 LVSPAALAAKVSVTPEEAQ 258



 Score = 41.2 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 22/66 (33%), Gaps = 2/66 (3%)

Query: 244 PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHE 301
                     Q     P  T KG+  + + DK+   +     ++A +  +    K  +  
Sbjct: 345 ELVTRAFALKQGELGGPVETAKGIYLLQVLDKKPSVVPPLAQVRAQVEQKLLEVKGAEVA 404

Query: 302 AEYVKK 307
            +  ++
Sbjct: 405 KKKAEE 410


>gi|253997164|ref|YP_003049228.1| EpsD family peptidyl-prolyl cis-trans isomerase [Methylotenera
           mobilis JLW8]
 gi|253983843|gb|ACT48701.1| peptidyl-prolyl cis-trans isomerase, EpsD family [Methylotenera
           mobilis JLW8]
          Length = 338

 Score = 51.6 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/309 (11%), Positives = 74/309 (23%), Gaps = 46/309 (14%)

Query: 13  IKLLTTYFVLIIFCIVPIVSY--KSWAMSSRIRTTINGEVITDGDISKRIALLK-LQKIN 69
           I++     ++ +   +   +    S A +S+    +NG+ IT   ++  +       +  
Sbjct: 20  IRMFALVVLVAMALQMTACNKKDNSAARASQTIARVNGDEITVHQVNNELQRANVKPEQQ 79

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
               K  VQ LI   +  Q    + +  +                               
Sbjct: 80  EAAAKQIVQALIDRQVLVQAAIDAKMDRN------------------------------P 109

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT-VLFSIP 188
                 +    Q +    +             +I   K    ++     +     L    
Sbjct: 110 RVVQAIESAKAQILAQAYIDEKLSQVAKVTVADIAQYKTTHADVFADRKMYLMDELSLPL 169

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
           D        V  + K   E    L +   K                       L      
Sbjct: 170 DAYSAELNAVADKAKSMAEIMQWLDEHGVKYNHQQVAH-----------ASETLPSPLLA 218

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLG-GEIALKAYLSAQNTPTKIEKHEAEYVKK 307
            L K +         ++G     I   ++    +   K  +       K +      +K+
Sbjct: 219 ELSKMKLQDIIFIRARQGNVIAQILQIKNAPAADDDTKKQVEQLIIAEKRKAIIEAEMKR 278

Query: 308 LRSNAIIHY 316
           L   A + Y
Sbjct: 279 LHEAAKVIY 287


>gi|154332458|ref|XP_001562603.1| PPIase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134059493|emb|CAM41720.1| putative peptidyl-prolyl cis-trans isomerase/rotamase [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 115

 Score = 51.6 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 8/77 (10%), Positives = 19/77 (24%), Gaps = 1/77 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
               +  +  +          +   + +     V  G        ++   F++  K    
Sbjct: 36  EAAAELQQWRQSIEDGKMTFEDAARQRSDCGSYVRGGDLGVFGPGEMMKPFEDATKGLEV 95

Query: 255 NNTTNPYVTQKGVEYIA 271
              +    T  GV  I 
Sbjct: 96  GQMSGLVATDSGVHLIK 112


>gi|330875443|gb|EGH09592.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 91

 Score = 51.6 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 6/77 (7%), Positives = 21/77 (27%), Gaps = 1/77 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
              +  +  ++   +        +K +S       G    +    +      ++ K    
Sbjct: 11  KTAEEAEQLKQRIAKGEAFDVLAKKHSSCPSGKRGGDLGEVRPGQMVGAMDQVIFKKPLR 70

Query: 257 TT-NPYVTQKGVEYIAI 272
               P  ++ G   + +
Sbjct: 71  VVHGPIKSKFGYHLVQV 87


>gi|323157884|gb|EFZ43987.1| chaperone surA domain protein [Escherichia coli EPECa14]
          Length = 64

 Score = 51.6 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 257 TTNPYVTQKGVEYIAICDKRDL-GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            + P  +  G   I + D R++   + A K          K  +  A ++++ R++A + 
Sbjct: 1   MSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVK 60

Query: 316 Y 316
            
Sbjct: 61  I 61


>gi|146322860|ref|XP_755189.2| peptidyl-prolyl cis/trans isomerase [Aspergillus fumigatus Af293]
 gi|129558496|gb|EAL93151.2| peptidyl-prolyl cis/trans isomerase [Aspergillus fumigatus Af293]
          Length = 175

 Score = 51.6 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 8/109 (7%), Positives = 25/109 (22%), Gaps = 1/109 (0%)

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
               +    +       R   +   +     +  ++      +  R       +     +
Sbjct: 66  EGKIRCSHLLIKHRDSRRPSSWREAEITRSKEEAIEILRGHEQRIRSGEVSLGDIAVSES 125

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                   G   +    ++  +F++          +    T  GV  I 
Sbjct: 126 DCSSARKKGDLGFFGRGEMQKEFEDAAFALQPGQVSGIVETASGVHLIE 174


>gi|159129278|gb|EDP54392.1| peptidyl-prolyl cis/trans isomerase [Aspergillus fumigatus A1163]
          Length = 192

 Score = 51.6 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 8/109 (7%), Positives = 25/109 (22%), Gaps = 1/109 (0%)

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
               +    +       R   +   +     +  ++      +  R       +     +
Sbjct: 83  EGKIRCSHLLIKHRDSRRPSSWREAEITRSKEEAIEILRGHEQRIRSGEVSLGDIAVSES 142

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                   G   +    ++  +F++          +    T  GV  I 
Sbjct: 143 DCSSARKKGDLGFFGRGEMQKEFEDAAFALQPGQVSGIVETASGVHLIE 191


>gi|326493260|dbj|BAJ85091.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 124

 Score = 51.6 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 6/65 (9%), Positives = 16/65 (24%), Gaps = 1/65 (1%)

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
           +         +   + +        G         +   F++          ++   T+ 
Sbjct: 56  QILAGRASFADLAAQHSDCSSARRGGDLGTFGRRQMQKPFEDATYALKVGEISDIIDTES 115

Query: 266 GVEYI 270
           GV  I
Sbjct: 116 GVHII 120


>gi|319941329|ref|ZP_08015660.1| hypothetical protein HMPREF9464_00879 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805250|gb|EFW02073.1| hypothetical protein HMPREF9464_00879 [Sutterella wadsworthensis
           3_1_45B]
          Length = 268

 Score = 51.6 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 58/239 (24%), Gaps = 17/239 (7%)

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
            +     E   +     +   N       R   +  +  S +  K+G+      +    +
Sbjct: 37  QQEAVATEAISNNPNPHAAIANPQIEDQVRQMVIEYKVMSQYAKKEGLDKQQAVKDDIER 96

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
                ++K+          +     K + +  + R       +  I          +   
Sbjct: 97  MTDMVLMKHAVNEYVKKNPVTEKELKDEYQKESDRWGKTEYRVRHILVKTQDEAKQI--- 153

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE----SDLHPQFQNLLKKSQNNT 257
               ++            EK   +      G   +         L      L K   +  
Sbjct: 154 ---IDQINKGASFAKIAAEKSLDEESKDRGGILDWTSASVFTGQLSSAIMGLKKGEMDKV 210

Query: 258 TNPYVTQKGVEYIAICDKRDL---GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
             P  +  G   + + D R         A K  L       K++    E V  LR+   
Sbjct: 211 --PVQSPAGFHVVKVEDVRPAELYPKYEARKEELRHILLQRKVQAFIHEQV--LRAEVK 265


>gi|225682401|gb|EEH20685.1| predicted protein [Paracoccidioides brasiliensis Pb03]
 gi|226289798|gb|EEH45282.1| predicted protein [Paracoccidioides brasiliensis Pb18]
          Length = 127

 Score = 51.6 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 6/85 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               + ++A E      K      +F+        G   + +   L   F+      + +
Sbjct: 44  EKHSKKEEALEKLRNGAKFDEVAREFSED-KARQGGSLGWKIRGSLDASFEKAAYDLEPS 102

Query: 257 TTN-P----YVTQKGVEYIAICDKR 276
           TT  P      T  G   I +  ++
Sbjct: 103 TTGNPKWTEVKTGFGYHIIMVEGRK 127


>gi|218261354|ref|ZP_03476208.1| hypothetical protein PRABACTJOHN_01874 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224075|gb|EEC96725.1| hypothetical protein PRABACTJOHN_01874 [Parabacteroides johnsonii
           DSM 18315]
          Length = 470

 Score = 51.6 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/210 (10%), Positives = 52/210 (24%), Gaps = 6/210 (2%)

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
              K   ++   + +K   ++      D +  +            S +      +   I 
Sbjct: 7   NQRKELFKQKEGKVIKYIAVDIRPSKEDYDKASAEIEALKSELATSEKVADLVTENSEIP 66

Query: 131 DNH-FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
               F    A+       VK   +        E    +               V   +  
Sbjct: 67  YMDAFFTENALDPEMKQFVKTANVGDVYGPVFENDKYRLFKLVDKTVAPDSVKVSHIMLA 126

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD----LHPQ 245
           N         K          +        +++++       G+  +  E+     ++  
Sbjct: 127 NTGDEAAIKAKADSL-LNVLKKGGDFAALAKEYSADQAAEKGGELGWFTEATALRGVNDD 185

Query: 246 FQNLLKKSQNNTTNPYVTQKGVEYIAICDK 275
           F+  +  +  N  +   +  G   I + DK
Sbjct: 186 FKKAVFSTPVNDYSIVKSLYGTHIIKVTDK 215


>gi|170059343|ref|XP_001865322.1| dodo [Culex quinquefasciatus]
 gi|167878150|gb|EDS41533.1| dodo [Culex quinquefasciatus]
          Length = 159

 Score = 51.6 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/106 (8%), Positives = 25/106 (23%), Gaps = 1/106 (0%)

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
             Q    +       R   +   +        +       ++ +          +K++  
Sbjct: 50  EVQCAHLLVKHRDSRRPGSWREENITRSKSEALLILEGYRKQIQSGEATLPELAQKYSDC 109

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                 G         +   F++        + ++   T  GV  I
Sbjct: 110 SSAKRGGDLGMFKRGMMQKPFEDAAFALKVGDMSDVVDTDSGVHLI 155


>gi|330752745|emb|CBL88208.1| peptidyl-prolyl cis-trans isomerase [uncultured Leeuwenhoekiella
           sp.]
          Length = 706

 Score = 51.6 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 29/112 (25%), Gaps = 1/112 (0%)

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
                 +     A   +    K      +F++       G   Y  +      F + +  
Sbjct: 370 SKTEAKKLADSLASVIKGSASKLAELAPQFSADGSKEKGGDLGYATKGRYVKPFNDFIFN 429

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA-QNTPTKIEKHEAE 303
                     +Q G   I I D+++    I L       + +   I +    
Sbjct: 430 GSTGEVGVVESQYGYHVIRIDDQKNKQRAIKLATVAKEIEPSQETINEVFNA 481



 Score = 43.9 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 62/246 (25%), Gaps = 17/246 (6%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD----IS 57
            +K+       I ++       +   V      S   S RI  ++N E I   +    + 
Sbjct: 4   LNKIRQRSVFLIAIIALALFAFVLADVLKNGGFSTEKSQRILGSVNDEDIEQQEFAGLVD 63

Query: 58  KRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
            + A         +    A ++ +   L  ++ +  GIT + + +N    +  +N     
Sbjct: 64  SQTARYGAGITTTQAVNAAWEQEVRRILLDEQYDDLGITVEQDRINDLLKEALQNDPNFQ 123

Query: 118 EDFSSFLD-------------KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
            D                             +     +    +  +           E  
Sbjct: 124 NDGVFSEQKLREYVATLKSTNPTMYAQWVDYEKQLANNEQQQIYFSLVKAGLNTSFKEGQ 183

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
              +   N+   EY+         D    ++  +   I+  +           +   F+ 
Sbjct: 184 MAYELENNLRDLEYVQIPYASISDDKVSVSKEDISNYIEKHKADFKSEASRNLRYVMFSE 243

Query: 225 KIHDVS 230
                 
Sbjct: 244 SASATD 249



 Score = 43.1 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 19/263 (7%), Positives = 72/263 (27%), Gaps = 4/263 (1%)

Query: 56  ISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
           +  +     ++  + + ++ A++   V    +   E     F++ T     V   +N+  
Sbjct: 438 VESQYGYHVIRIDDQKNKQRAIKLATVAKEIEPSQETINEVFNATTKFQMAVSEDKNSFE 497

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
                 ++  +         + L  Q    ++++  F       +++          + +
Sbjct: 498 KVAKSENYTVRPVNSIKALDETLPGQGSQREIIRWAFNEDTKTGDVQRFNVDGGYLVVQL 557

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKA- 234
                + ++     +         ++  +  + ++               +   +     
Sbjct: 558 TSKTEKGLMPVDQASPRVTPIIRNEKKAELIKKQISGKDLNAIASANNVSVQTANGVNLK 617

Query: 235 --QYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN 292
                                +   +NP    KGV  + + +           ++   +N
Sbjct: 618 NPTLAGAGTEPKVMGVAFGLDKGAVSNPIAGDKGVYVVKVTNVTPARKLDNYASFAMQKN 677

Query: 293 TPTKIEKHEAEYVKKLRSNAIIH 315
              +   +    ++ L+  A I 
Sbjct: 678 NADRANVNVV-LLQALKDAADIE 699


>gi|325117413|emb|CBZ52965.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Neospora
           caninum Liverpool]
          Length = 224

 Score = 51.6 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 5/60 (8%), Positives = 15/60 (25%), Gaps = 1/60 (1%)

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                   +++        G   +     +   F++          ++   T  G+  I 
Sbjct: 54  ENFAQLANQYSDCGSFQKGGDLGFFTRGMMQKPFEDASFALQVGEISDIVDTDSGLHLIY 113


>gi|71734207|ref|YP_274523.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257484583|ref|ZP_05638624.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|298486848|ref|ZP_07004904.1| Peptidyl-prolyl cis-trans isomerase ppiC [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|302189916|ref|ZP_07266589.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. syringae 642]
 gi|71554760|gb|AAZ33971.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298158715|gb|EFH99779.1| Peptidyl-prolyl cis-trans isomerase ppiC [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|320324315|gb|EFW80394.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320328562|gb|EFW84564.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330885577|gb|EGH19726.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330890135|gb|EGH22796.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           mori str. 301020]
 gi|330901181|gb|EGH32600.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330944620|gb|EGH46570.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           pisi str. 1704B]
 gi|330980410|gb|EGH78513.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           aptata str. DSM 50252]
 gi|330988820|gb|EGH86923.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331008130|gb|EGH88187.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 91

 Score = 51.6 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 6/77 (7%), Positives = 20/77 (25%), Gaps = 1/77 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
              +  +  +    +        +K +S       G    +    +      ++ K    
Sbjct: 11  KTAEEAEQLKLRIAKGEAFDVLAKKHSSCPSGKRGGDLGEVRPGQMVGAIDQVIFKKPLR 70

Query: 257 TT-NPYVTQKGVEYIAI 272
               P  ++ G   + +
Sbjct: 71  VVHGPIKSKFGYHLVQV 87


>gi|331249905|ref|XP_003337566.1| ESS1 protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309316556|gb|EFP93147.1| ESS1 protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 170

 Score = 51.6 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/166 (6%), Positives = 34/166 (20%), Gaps = 4/166 (2%)

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
            A+         +                   +     ++      +      E      
Sbjct: 1   MAQAHDWEYFYSNQLKKSCWDRPTEITPEEVEKLPGAHLLHGAVTSQGLGGATEKVRASH 60

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQ---KRIKDAEESRLRLPKDCNKLEKFASK 225
            +               +I   K +    ++    ++ +  +      +        +  
Sbjct: 61  LLVKHAQSRRPASWKEANITRTKEEAIEILKGYQSKLSEIGDKAELAEQFAELASAHSDC 120

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYI 270
               + G         +   F++       +  +    T+ GV  I
Sbjct: 121 SSHANGGDLGLFGRGQMQKPFEDATYALGIHELSPIVDTESGVHLI 166


>gi|261190124|ref|XP_002621472.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Ajellomyces dermatitidis
           SLH14081]
 gi|239591300|gb|EEQ73881.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Ajellomyces dermatitidis
           SLH14081]
 gi|239606360|gb|EEQ83347.1| peptidyl-prolyl cis-trans isomerase [Ajellomyces dermatitidis ER-3]
          Length = 181

 Score = 51.6 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/168 (7%), Positives = 34/168 (20%), Gaps = 1/168 (0%)

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
                         + ++   +     +     L +          D     G     + 
Sbjct: 11  EVRHSNSKNLPYYFNPTTKESRWEPPADTDTDKLKVYMAQHHSGPADRYTLGGAGGGPVE 70

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
              +    +       R   +   +     +  ++      E  R       +     + 
Sbjct: 71  GKIRASHLLIKHRGSRRPSSWRESEITRSKEEALEILRGHEERIRAGETTLGDIAMSESD 130

Query: 225 KIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                  G   +    ++  +F+           +    T  GV  I 
Sbjct: 131 CSSARKKGDLGFFGRGEMQAEFEEAAFALKPGQVSGIVETASGVHLIE 178


>gi|157736302|ref|YP_001488985.1| hypothetical protein Abu_0031 [Arcobacter butzleri RM4018]
 gi|157698156|gb|ABV66316.1| conserved hypothetical protein [Arcobacter butzleri RM4018]
          Length = 274

 Score = 51.6 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 88/282 (31%), Gaps = 29/282 (10%)

Query: 36  WAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGI 95
            +M + +   +N E IT  DI + +       +N   +  AV  LI + L  Q +++  I
Sbjct: 17  ASMVNGVAILVNEEPITLYDIERTM------VVNKIPKNEAVSYLIDKILYDQLVQEYNI 70

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
           T D   VN +  + A + G+    F + + ++    + F+       I   +V+     +
Sbjct: 71  TADIFEVNDYIEKLANSNGMDIYAFKAIIKQEYPDYSVFENEAKNTVIRQKLVQKLVKGQ 130

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
                 E                        +   K +N+    K     + S       
Sbjct: 131 LAIATDED---------------------MQLYYEKNRNKYLTAKTFDVTQYSSTSKEAL 169

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK 275
               +       +V     +   E         L     N+ T  +   K      I  K
Sbjct: 170 MEVAKNPIIIPSEVQRTSLKLNTEDIQAQLQYLLNGTKVNSFTPIFTANKQYVTFFITKK 229

Query: 276 RDLGG--EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                    ++KA +       + +K+  +Y +K +  A I 
Sbjct: 230 EGTAPLSYESVKARIFNDIMMNREQKYLKDYFEKQKLIADIK 271


>gi|254883668|ref|ZP_05256378.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 4_3_47FAA]
 gi|319642194|ref|ZP_07996854.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_40A]
 gi|254836461|gb|EET16770.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 4_3_47FAA]
 gi|317386180|gb|EFV67099.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_40A]
          Length = 446

 Score = 51.6 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/175 (7%), Positives = 45/175 (25%), Gaps = 4/175 (2%)

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                  D        +      +++          +       Q  + +   +++    
Sbjct: 68  YAHDMGIDTLSVFRRQVDWYRGKLLRTYLADAEKEEQAARRLYLQGEQRLQANDWIKIAH 127

Query: 184 LFSIPDNKLQNQGF--VQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYLLES 240
           +          Q    V++++    E+            +++         G   ++  +
Sbjct: 128 ISKYLSQNASRQEEMRVRQQMDSVYEALWEGADFATLARRYSDDEACKNVGGVLPWMPVN 187

Query: 241 -DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP 294
            ++      L    +N  + P+ +  G+  +   D+R        +  L      
Sbjct: 188 KNMQEWIDKLESLERNKISAPFYSPMGIHIVKWIDRRQGVSFEEKREQLLNYLEK 242


>gi|330958452|gb|EGH58712.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 91

 Score = 51.6 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 6/77 (7%), Positives = 21/77 (27%), Gaps = 1/77 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
              +  +  ++   +        +K +S       G    +    +      ++ K    
Sbjct: 11  KTAEEAEQLKQRIAKGEAFDVLAKKHSSCPSGKRGGDLGEVRPGQMVGAIDQIIFKKPLR 70

Query: 257 TT-NPYVTQKGVEYIAI 272
               P  ++ G   + +
Sbjct: 71  VVHGPVKSKFGYHLVQV 87


>gi|325568277|ref|ZP_08144644.1| peptidyl-prolyl cis-trans isomerase [Enterococcus casseliflavus
           ATCC 12755]
 gi|325158046|gb|EGC70199.1| peptidyl-prolyl cis-trans isomerase [Enterococcus casseliflavus
           ATCC 12755]
          Length = 344

 Score = 51.6 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/293 (10%), Positives = 70/293 (23%), Gaps = 37/293 (12%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +L+    + + +  +   SS    T+ G  IT  D   +              + 
Sbjct: 1   MKKKLILVAVSAMSLFALAACGNSSEEIATMKGGKITVQDFYDKAK-------TSTENQQ 53

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           A++E+I   + K   EK G       ++  F   A   G S    S+          +  
Sbjct: 54  ALREMI---VLKVFNEKYGDDVTEEMIDEQFNNVAEQYGGSDSFESTLTAS-----GYTV 105

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    +      ++          + ++             + +                
Sbjct: 106 KSYRAELKQQLALREGLKANMDITDEDMKTAWDSFHPEVEAQIIKVAS------------ 153

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL--LKKS 253
                +    E  +          EK          G  ++   S   P           
Sbjct: 154 -EDDAKDVLEEAKKDDADFGEIAKEKSTDAATKEDGGTIKFDSTSSAVPSEVKTAAFDLK 212

Query: 254 QNNTTNPYVTQKG------VEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEK 299
               +                 + +   +D G ++   K  L+     T +  
Sbjct: 213 DGEISEVISATNTSTYTTEYYIVKMVKNQDKGNDMDKYKDELTEIAQNTLLND 265


>gi|156845787|ref|XP_001645783.1| hypothetical protein Kpol_1010p41 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116451|gb|EDO17925.1| hypothetical protein Kpol_1010p41 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 164

 Score = 51.6 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/104 (11%), Positives = 32/104 (30%), Gaps = 1/104 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
            +  +   +   R       D  +  +  +++     E+ +          ++ +     
Sbjct: 58  CLHLLIKHKESRRPASHRSEDITISKEEAIEELKGYQEKLKNDPTLFEELAKERSDCSSF 117

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
              G   Y  + ++ P F+    K   N  ++   +  GV  I 
Sbjct: 118 KRGGDLGYFGKGEMQPSFEKAAFKLKINEISDIVESDSGVHLIK 161


>gi|258574209|ref|XP_002541286.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Uncinocarpus reesii
           1704]
 gi|237901552|gb|EEP75953.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Uncinocarpus reesii
           1704]
          Length = 440

 Score = 51.6 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 8/115 (6%), Positives = 25/115 (21%), Gaps = 1/115 (0%)

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
               +     +    +       R   +   +     +  ++      +          +
Sbjct: 13  PSASQKEGQIRASHLLIKHRDSRRPTSWREANITRTKEEAIEILNGHLKRIMAGEATLGD 72

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                +        G   +     +  +F++          +    TQ GV  I 
Sbjct: 73  IATTESDCSSARKKGDLGFFTHGVMQKEFEDASFALKPGQISGIVETQSGVHLIE 127


>gi|212532779|ref|XP_002146546.1| peptidyl-prolyl cis/trans isomerase [Penicillium marneffei ATCC
           18224]
 gi|210071910|gb|EEA25999.1| peptidyl-prolyl cis/trans isomerase [Penicillium marneffei ATCC
           18224]
          Length = 191

 Score = 51.6 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 8/110 (7%), Positives = 26/110 (23%), Gaps = 1/110 (0%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                +    +       R   +         +  ++      +  +    +  +     
Sbjct: 63  AEGKIRCAHLLVKHRDSRRPSSWRESTITRTKEEAIEILRGHEQRIKSGEVRLADLAVSE 122

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
           +        G   +    ++  +F+           ++   TQ GV  I 
Sbjct: 123 SDCSSARKKGDLGFFGHGEMQKEFEEAAFALQPGEVSSIVETQSGVHLIE 172


>gi|195999062|ref|XP_002109399.1| hypothetical protein TRIADDRAFT_21648 [Trichoplax adhaerens]
 gi|190587523|gb|EDV27565.1| hypothetical protein TRIADDRAFT_21648 [Trichoplax adhaerens]
          Length = 153

 Score = 51.6 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 7/108 (6%), Positives = 24/108 (22%), Gaps = 1/108 (0%)

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
               +    +       R   +   +        ++   +  ++             + +
Sbjct: 42  EDKVRASHLLVKHNESRRPSSWRQNEITRSKDDALKLIQEYRKKIVGGEITLGQLALEMS 101

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                   G   +     +   F++          + P  T  G+  I
Sbjct: 102 DCSSARKEGDLGFFGRGQMQKPFEDATYALQIGELSEPVFTDSGIHII 149


>gi|289620047|emb|CBI53491.1| unnamed protein product [Sordaria macrospora]
          Length = 130

 Score = 51.6 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/81 (13%), Positives = 27/81 (33%), Gaps = 6/81 (7%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP 260
           + ++A               +++      + G   +  +  L P+F+ +    + +TT  
Sbjct: 51  KKEEALAKIRDGADFGAVAREYSED-KARTGGSLGWKQKGTLDPEFERVAFALETSTTGK 109

Query: 261 -----YVTQKGVEYIAICDKR 276
                  T  G   I +  K+
Sbjct: 110 PQIGEAKTPFGYHIIMVEGKK 130


>gi|120437303|ref|YP_862989.1| PpiC-type secreted peptidyl-prolyl cis-trans isomerase [Gramella
           forsetii KT0803]
 gi|117579453|emb|CAL67922.1| PpiC-type secreted peptidyl-prolyl cis-trans isomerase [Gramella
           forsetii KT0803]
          Length = 706

 Score = 51.6 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/278 (10%), Positives = 59/278 (21%), Gaps = 20/278 (7%)

Query: 50  VITDGDISKRIALLKLQKINGELEK----------------IAVQELIVETLKKQEIEKS 93
            +T  DI   +     +                         A + L     ++ E   +
Sbjct: 212 EVTKSDIKSYLDNHSSRFETEASRSLQYVIFEESASGDDKTEAKETLNSLRNQRVEYNAA 271

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
               D+         +A   G +++       K     +             +       
Sbjct: 272 VGANDTLAGFDNTDDYATFVGNNSDLPFENRFKFRNDFSGNNAEAIFSLNEGETYGPYEE 331

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
             Y  L   I               +               +         A   +    
Sbjct: 332 NGYWKLSKVIQTKNIPDSVKASHILVTYQGSQLGAGVSRSKEEAQVLADSIAGVVKGDNA 391

Query: 214 KDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAI 272
           K      +F+    +    G   Y +   + P F N +  +         T  G   I+I
Sbjct: 392 KFAELASEFSADGSNKEQGGDLGYFVPGTMIPAFDNYVFDNSTGDVGVVETPLGYHVISI 451

Query: 273 CDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
            D+ +    + +             EK       ++  
Sbjct: 452 DDQTEAARAVKVATIAKEI---QASEKTMNNLFNEVTK 486



 Score = 49.3 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/201 (11%), Positives = 49/201 (24%), Gaps = 7/201 (3%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
            +K+       I ++       +   V      +   S     T+NG  I   + ++ + 
Sbjct: 4   LNKIRQRSVFLIIIIALALFSFVLADVIRNGGMASQSSQNTIATVNGNEIGREEFAREVE 63

Query: 62  LLKLQKINGELEKIAVQELIVET----LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
             +    N      AV  +  +     + ++E+EK GI      V         N     
Sbjct: 64  AFERNMGNNMSTTQAVNRIWEQKLRQVILEEEVEKLGIRAGEAQVTQLVRTQMANNPNFT 123

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
            +   F + +        +  + Q+         F                    +    
Sbjct: 124 NEAGMFDENRLREYVANLKETSPQAYEQW---QQFTSNLAETAKMNSYYNMVGAGVGATL 180

Query: 178 YLIRTVLFSIPDNKLQNQGFV 198
                      DN       V
Sbjct: 181 IEGEQAYRLQNDNINMKFVQV 201



 Score = 39.3 bits (89), Expect = 0.85,   Method: Composition-based stats.
 Identities = 14/176 (7%), Positives = 45/176 (25%), Gaps = 4/176 (2%)

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
               V++  F  +    ++             +     + ++     +        +++ 
Sbjct: 525 AQRRVIQWAFEDEAKVGDVRRFETNNGYVVAQLTSKRDKGLMSVEEASGEVTPILRKEKK 584

Query: 203 KDAEESRLRLPKDCNKLEKF---ASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN 259
               + RL+                    V++         +       +        ++
Sbjct: 585 AKLIKDRLKGSSLQEIANNQGVSVQNADAVNLSSPTLAGAGEEPEVVGAVFSLEPGKVSS 644

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           P   +KGV    +  K +     + K +   ++   + +         L+  A I 
Sbjct: 645 PIAGEKGVYVAELVSKFEAPTMDSYKGFAQQESAARRAQATMRI-FDALKKKAEIE 699


>gi|312217546|emb|CBX97494.1| hypothetical protein [Leptosphaeria maculans]
          Length = 258

 Score = 51.6 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/172 (6%), Positives = 32/172 (18%), Gaps = 5/172 (2%)

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
              +            S+   +         + L          K      +   + +I 
Sbjct: 13  EVRRSNTKNLPYYFQASTKDSRWEPPAGTDPEKLKQYMAIHHSSKGVAPAAFQPTKDKIR 72

Query: 165 ANK----QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
                               +         +L      Q +  +                
Sbjct: 73  CAHLLVKHADSRRPASWREPKITRTKAEAIELIEGYQRQIQAYEQGTDDPNAKSLSELAT 132

Query: 221 KFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
             +        G   +    D+  +F+    +  +   +    T  G+  I 
Sbjct: 133 TESDCSSARKGGDLGFFGRGDMQREFEEAAFRLEKGQVSEIVDTASGIHLIQ 184


>gi|255534296|ref|YP_003094667.1| Peptidyl-prolyl cis-trans isomerase [Flavobacteriaceae bacterium
           3519-10]
 gi|255340492|gb|ACU06605.1| Peptidyl-prolyl cis-trans isomerase [Flavobacteriaceae bacterium
           3519-10]
          Length = 716

 Score = 51.6 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/266 (11%), Positives = 73/266 (27%), Gaps = 12/266 (4%)

Query: 47  NGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF 106
           N   +T  D++  I    +         I +          Q+   +    +        
Sbjct: 212 NPVKVTTQDLADYIKKHPILFKRDASRNIGL-VYFPAAASPQDEAVTQAEINKLFAQGTE 270

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS---IWPDVVKNDFMLKYGNLEMEI 163
           +   +    +  + S F+        + + + A Q    I   V        +G  + + 
Sbjct: 271 MSGGKENFQNTTNDSMFVSLNSDLPFNPQYFSAEQLPVSIKDKVAAASVGTTFGPYKEQN 330

Query: 164 PANKQKMKNITVREYLIRTVLFSIPD------NKLQNQGFVQKRIKDAEESRLRLPKDCN 217
                K+ +    +  +   +           N+ +++   +K            P+   
Sbjct: 331 FYVVSKLLDKKPSDSTLSRHILVSYKGNQAGGNETRSKEEAKKLADSIGAVLKSAPQKFT 390

Query: 218 KLEKFASKI-HDVSIGKAQYLLESD-LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK 275
           +  K+++        G   +   +    PQ+ + L  +    T    T  G   I I DK
Sbjct: 391 EFLKYSADPGSAGQGGSVGWTTPATPFVPQYLSFLANNGKGATGVVETDYGYHIINIEDK 450

Query: 276 RDLGGEIALKAYLSAQNTPTKIEKHE 301
           +       +   +       K E   
Sbjct: 451 KTGAMTYKVANLVKTIKASDKTENEV 476



 Score = 38.9 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 68/199 (34%), Gaps = 9/199 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           +  ++       + ++    +   F + P    + +     +   +NGE IT  +   ++
Sbjct: 3   ILGQIRNRPWLLMGIIAVAMLA--FVVNPDSLEQLFGAKPGVYGKVNGEEITKEEYDDQL 60

Query: 61  ALLKLQKINGE-----LEKIAVQELIVETLKKQEIEKSGITF--DSNTVNYFFVQHARNT 113
            +L+ Q          L++ A Q ++   L KQ+ +K G+T   D       F       
Sbjct: 61  FMLQQQAQQQGQPATGLDEQAWQMMVQSKLIKQQFDKMGLTLTEDMFWNQLQFDPMFAQN 120

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
             + +   +F  ++        Q      ++ + ++    ++Y  +  ++ AN       
Sbjct: 121 QENFDAKGNFKGQEIKKQIAELQTSGNVEMYNNWLRTRRTIEYRMMARQVFANVSTGITA 180

Query: 174 TVREYLIRTVLFSIPDNKL 192
           + +E            N  
Sbjct: 181 SKKEAEEMMKQRDQVANID 199


>gi|34556675|ref|NP_906490.1| hypothetical protein WS0233 [Wolinella succinogenes DSM 1740]
 gi|34482389|emb|CAE09390.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 485

 Score = 51.6 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/368 (10%), Positives = 94/368 (25%), Gaps = 74/368 (20%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL--------- 63
           I +  +    +    V   +Y   + S      +    IT  ++ +  A L         
Sbjct: 14  ITIWISVIAFVGAGFVGWGAYSFSSSS-SWVAKVGETKITQTELEQEYARLYEFYNKIVG 72

Query: 64  ----KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT---GLS 116
               K Q     +EK A+  LI +TL     +  G+      V    V+           
Sbjct: 73  GSLDKEQAKALGIEKQALDSLISKTLMLNFAKDVGLRVSDEEVAKAVVKMEAFHVEGKFD 132

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV---------------------VKNDFML- 154
            + +   L++       F++ L    +   +                     +++   + 
Sbjct: 133 DKTYRKVLEENHYKPAAFERALHDSLLLEKLGVILTPSVTELEKESLGAAFYIQDKLSIK 192

Query: 155 -------KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
                  K    + E+ +   + +++ + + +   +     ++++       K   D+ +
Sbjct: 193 TLSSTSLKPVVSDEEVKSFWGENQDVYMTDRVYDIIYSLSKNDEISASDEELKIHYDSFK 252

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGK--------------------------AQYLLESD 241
           +            + A    +                                    E+ 
Sbjct: 253 NNYLGLDGRPLEFELARTRVEKDYKDAQAEKNALKTYIEFKKSPTPEGTRYSLAESDETL 312

Query: 242 LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG--EIALKAYLSAQNTPTKIEK 299
                  L +     T  P  + +G   I +   ++       A K          K   
Sbjct: 313 GDELLYRLSEAKVGETLKPVPSPEGYLTIKLMGIKESEPMKFEAAKELARNDLLAQKKRD 372

Query: 300 HEAEYVKK 307
              E  KK
Sbjct: 373 LLEEMAKK 380


>gi|195062884|ref|XP_001996270.1| GH22285 [Drosophila grimshawi]
 gi|193899765|gb|EDV98631.1| GH22285 [Drosophila grimshawi]
          Length = 130

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------L 249
             Q +I +A +      K       ++        G   + +   +   FQ+        
Sbjct: 45  EKQGKIMEAMDKLKAGQKFPEVATAYSED-KARQGGDLGWQIRGAMVGPFQDAAFALPIS 103

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKR 276
              +   T  P  T+ G   I +  K+
Sbjct: 104 NVNNPIYTDPPIKTKFGYHIIMVEGKK 130


>gi|313241741|emb|CBY33960.1| unnamed protein product [Oikopleura dioica]
          Length = 142

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             Q ++ +A                ++      S G   +LL   +   FQ    +   +
Sbjct: 57  EKQSKVLEAMGKLKEGQAFNTVATNYSED-KARSGGSLGWLLRGTMVGPFQEAAFQLPIS 115

Query: 257 TT-------NPYVTQKGVEYIAICDKR 276
           T         P  T+ G   I I  K+
Sbjct: 116 TCSNPSYTDPPVKTKFGYHIIMIEGKK 142


>gi|210620774|ref|ZP_03292241.1| hypothetical protein CLOHIR_00184 [Clostridium hiranonis DSM 13275]
 gi|210155168|gb|EEA86174.1| hypothetical protein CLOHIR_00184 [Clostridium hiranonis DSM 13275]
          Length = 339

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/328 (11%), Positives = 88/328 (26%), Gaps = 23/328 (7%)

Query: 2   TSKVFTSLSDFIKLLT-----------TYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEV 50
              +F+ +  +I  L              F+ +++  +  +       S  I   I+GE 
Sbjct: 3   NKNIFSKIKKYISKLLDSTLLIVIALLLIFLTMLYVYIRPIDSNIKNDSKEIVAYIDGEK 62

Query: 51  ITDGDISKRIALLKLQKINGELEKI----AVQELIVETLKKQEIEKSGITFDSNTVNYFF 106
           +   ++ KR         N  +E +      +ELI   + +  + +     + +      
Sbjct: 63  LRFNEVEKRAEETFYIDKNNTIENLGSDTYKKELIKYVVYEDILYRKAKEENIHVTKQEI 122

Query: 107 VQHA-RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
                         F+    +        K  L                K    + E  A
Sbjct: 123 EDTYCSVEKFITSKFNLDDAEFKNKYADDKNKLVKSMRKSIKAYKYLDEKTRVSDSEARA 182

Query: 166 NKQKMKNITVREYLIRTVLFSIPDN----KLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
                K+           + ++  +      +     + R  +         K  +  ++
Sbjct: 183 YYDAHKDKFREGVYRDIFISTVDSSGKKLSKEEIDNAENRANEIYRKLEEGCKFEDLEDE 242

Query: 222 FASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN--TTNPYVTQKGVEYIAICDKRDLG 279
           ++  I     G    L  S    + +N +   +       P  +  G   I      +  
Sbjct: 243 YSEDIEGTIPGGLGDLEMSFTDQKLRNKISTLKVGECIEKPLRSAYGYHIIKRVGTEE-E 301

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKK 307
               +K  + +  +  K  K     +K+
Sbjct: 302 PFDKVKEEIKSMLSYKKQIKLIESLMKE 329


>gi|159042823|ref|YP_001531617.1| hypothetical protein Dshi_0267 [Dinoroseobacter shibae DFL 12]
 gi|157910583|gb|ABV92016.1| hypothetical protein Dshi_0267 [Dinoroseobacter shibae DFL 12]
          Length = 449

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/294 (9%), Positives = 71/294 (24%), Gaps = 59/294 (20%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           ++        V   + A+S  +  T+N   IT+G     +  L    I  EL    +  L
Sbjct: 12  IIAPLLCWLAVLAAAPALSRDVLATVNRVEITEGHFEMFLRGLPRDYIRAELRPALLAHL 71

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I + +                        A       +    ++                
Sbjct: 72  IDQQVL-----------------------AERMAPRFDPDGYYIRL------------RQ 96

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
             +    +   F     + +  +    +    +    +   TV      +  Q       
Sbjct: 97  AKVAEAYLGARFDAISVSEDDLVDMYLKTYGRLA---WFDLTVATLPKRDAAQAFAQRVA 153

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTN 259
             K   E+      + +  E               +L   +L     +          ++
Sbjct: 154 LGKSFAEAAREAGAEASLFEA-------------DWLRRKELDPAILRAAAVLHSGGVSD 200

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           P  ++ G   +             ++  L+             + ++ LR+ + 
Sbjct: 201 PVRSRSGWHVVRADMIWHAPPFFGVRDELTKL-------ARFEQVLEALRTQSD 247


>gi|58337850|ref|YP_194435.1| peptidylprolyl isomerase [Lactobacillus acidophilus NCFM]
 gi|58255167|gb|AAV43404.1| PrtM precursor [Lactobacillus acidophilus NCFM]
          Length = 300

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/290 (8%), Positives = 72/290 (24%), Gaps = 39/290 (13%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIE 91
           +  S + S+    +  G  IT       +          +  K  +  +I+    +Q+  
Sbjct: 22  AACSNSGSNSTVASYKGGKITQQQYYDEMK-------KSQAGKSTLANMIINRALEQQYG 74

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
           K   +   +          +      + + S        +               + +  
Sbjct: 75  KYVSSKKVD----------KQYNNYKKQYGSQFSAVLQQNGMTASSFKENLKTNLLSEQA 124

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                   + +              +  ++ +L              +   +D  +    
Sbjct: 125 LKHIKKITKKQEQQAW----KSYQPKVTVQHIL-----------VAKKSTAQDIIKQLKD 169

Query: 212 LPKDCNKLEKFA-SKIHDVSIGKAQYL--LESDLHPQFQNLLKK-SQNNT-TNPYVTQKG 266
                +  +K++         GK       ++ L   F+    K       + P  +Q G
Sbjct: 170 GKSFSSLAKKYSLDTATKNKAGKLPSFDSTDNTLDSAFKTAAFKLKTGEVTSTPVKSQSG 229

Query: 267 VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE--AEYVKKLRSNAII 314
              I + +    G     K  +  +   +  +      + +  +   A +
Sbjct: 230 YHVIKMINHPAKGKFADHKKAIDDEIYASMAQDQSTMKDVIATVLKRADV 279


>gi|322419880|ref|YP_004199103.1| hypothetical protein GM18_2369 [Geobacter sp. M18]
 gi|320126267|gb|ADW13827.1| hypothetical protein GM18_2369 [Geobacter sp. M18]
          Length = 525

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 10/130 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP--------QFQN 248
            V+ +  + + + L   K    L++ A        G   Y     +          +   
Sbjct: 389 AVEAKAVEVKAADLAKKKAEEALQQLAKGAAAKETGSFGYAATGAVPTIGTSPELMEAAF 448

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA--YLSAQNTPTKIEKHEAEYVK 306
            L         P+        + +  + +       K    + A   P K ++   ++VK
Sbjct: 449 ALNAPNEAAKQPFKVGDRWYAVKLKSRTEAPLTDLAKDSGTIKAALLPKKQQEALDKWVK 508

Query: 307 KLRSNAIIHY 316
            LR  A I  
Sbjct: 509 GLRDKAKIDI 518



 Score = 38.5 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 62/237 (26%), Gaps = 26/237 (10%)

Query: 18  TYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI-------------ALLK 64
             F+  IF +            S    T+NG  I+  +  K               +L  
Sbjct: 23  LSFIGTIFLVWGKGGSDGQGGKSY-AATVNGTKISLDEFQKSYYRTRGLYEQIYGRSLTP 81

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF---FVQHARNTGLSAEDFS 121
             +    ++K+ +  L+   L   E +K G+      V           +N       + 
Sbjct: 82  EMEKQMGIKKLTINSLVDNVLIHAEAKKMGLKASKEEVAAEIAKIPAFQKNGAFDFGIYQ 141

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI-------- 173
             L    I    F++    + +     +N         + E+ A  +K K+         
Sbjct: 142 QTLKANRITPKDFEESQEQEMLLQKA-RNKVKDAAAVTDAEVKAAFKKQKDKIDLAYVSF 200

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS 230
           +  +      L              + +  +       L        K +    +V 
Sbjct: 201 SPADVKGSIKLTDQELTSYLQDHQNEFKTPEQVSVAYALVSPAQFAAKVSVTPEEVQ 257



 Score = 38.1 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 81/280 (28%), Gaps = 28/280 (10%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           IT  D  +      L +      K A    + +   K   +K     D   V++      
Sbjct: 149 ITPKDFEESQEQEMLLQKARNKVKDA--AAVTDAEVKAAFKKQKDKIDLAYVSFSPADVK 206

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
            +  L+ ++ +S+L          +Q     ++        F  K      E+    QK 
Sbjct: 207 GSIKLTDQELTSYLQDHQNEFKTPEQVSVAYALVSP---AQFAAKVSVTPEEVQTYYQKN 263

Query: 171 KNITVRE--YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
            +    +   L    +        Q Q   ++  + A ++  +     +     AS    
Sbjct: 264 IDRYQGKGGILPFAEVKEQASADAQKQKGAKEAYEKAADAVNKFRASADIDAAAASLGSK 323

Query: 229 VSIGKA--------QYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           V               + E+++       L   Q     P  T KG+  + + DK+    
Sbjct: 324 VEKTPLFSSKAPAAGLVGENEVV---ARALALKQGELGGPVETAKGIYLVKVLDKKPAAV 380

Query: 281 EIALKAYLSAQNTPTKIE--------KHEAEYVKKLRSNA 312
                + +        +E        K   E +++L   A
Sbjct: 381 --PPLSQIRGAVEAKAVEVKAADLAKKKAEEALQQLAKGA 418


>gi|237800449|ref|ZP_04588910.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331023308|gb|EGI03365.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 91

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 6/77 (7%), Positives = 21/77 (27%), Gaps = 1/77 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
              +  +  ++   +        +K +S       G    +    +      ++ K    
Sbjct: 11  KNAEEAEQLKQRIAKGEAFDVLAKKHSSCPSGKRGGDLGEVRPGQMVGAIDQVIFKKPLR 70

Query: 257 TT-NPYVTQKGVEYIAI 272
               P  ++ G   + +
Sbjct: 71  VVHGPVKSKFGYHLVQV 87


>gi|237831619|ref|XP_002365107.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 1, putative
           [Toxoplasma gondii ME49]
 gi|211962771|gb|EEA97966.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 1, putative
           [Toxoplasma gondii ME49]
 gi|221487040|gb|EEE25286.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting, putative
           [Toxoplasma gondii GT1]
 gi|221506728|gb|EEE32345.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting, putative
           [Toxoplasma gondii VEG]
          Length = 116

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 7/66 (10%), Positives = 19/66 (28%), Gaps = 1/66 (1%)

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
           +S +R         +++        G   +     +   F++          ++   T  
Sbjct: 48  KSSVRQENFAQLANQYSDCGSFQKGGDLGFFTRGMMQKPFEDASFALQVGEISDIIDTDS 107

Query: 266 GVEYIA 271
           G+  I 
Sbjct: 108 GLHLIY 113


>gi|332829600|gb|EGK02246.1| hypothetical protein HMPREF9455_01516 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 671

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/255 (9%), Positives = 61/255 (23%), Gaps = 35/255 (13%)

Query: 36  WAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGI 95
                 +  TI+G  +   ++              +     V   I   L          
Sbjct: 20  AQQDDTVVFTIDGVPVYKSEVEYAYKKGNANAETKQDFGDFVNSYINFKL---------- 69

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
                           N   +               + ++  +A Q +     +++++ K
Sbjct: 70  ----------------NVTEAKAQQLDTTASYQRQLSSYRSQMAQQYMNNTDYEDEYIEK 113

Query: 156 YGNLEME-IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
                 E +  N            L    L             ++      E S LR   
Sbjct: 114 IYKRMKENVEINHVMFPFDNKEIVLPADTLRMYKKAMEARAKILKGGFTGTELSTLRSGA 173

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAIC 273
                 +          G   ++       + ++ +     N  + P    +G   + + 
Sbjct: 174 MFYPRAES-------RNGYIGWVSPFMFAAKVEDAIYSLPLNEVSMPIRAARGYHIVQVL 226

Query: 274 DKRDLGGEIALKAYL 288
           ++R   G + ++  +
Sbjct: 227 NRRPAMGAVEIEQVV 241



 Score = 46.2 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 9/70 (12%), Positives = 24/70 (34%), Gaps = 1/70 (1%)

Query: 242 LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ-NTPTKIEKH 300
           +         +   + + P ++  G   I +  K        ++  L  +     K+++ 
Sbjct: 305 MDFTMAAFSLEKAGDISKPVMSNYGYHIIRLLRKIPTESLDVMRNQLRERILRSDKVQEL 364

Query: 301 EAEYVKKLRS 310
             E  + L+S
Sbjct: 365 SDEKRRSLKS 374


>gi|66046138|ref|YP_235979.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. syringae B728a]
 gi|63256845|gb|AAY37941.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. syringae B728a]
 gi|330970013|gb|EGH70079.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 91

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 6/77 (7%), Positives = 20/77 (25%), Gaps = 1/77 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
              +  +  +    +        +K +S       G    +    +      ++ K    
Sbjct: 11  KTAEEAEQLKLRIAKGEAFDVLAKKHSSCPSGKRGGDLGEVRPGQMVGAIDQVIFKKPLR 70

Query: 257 TT-NPYVTQKGVEYIAI 272
               P  ++ G   + +
Sbjct: 71  IVHGPIKSKFGYHLVQV 87


>gi|227904499|ref|ZP_04022304.1| peptidylprolyl isomerase [Lactobacillus acidophilus ATCC 4796]
 gi|227867754|gb|EEJ75175.1| peptidylprolyl isomerase [Lactobacillus acidophilus ATCC 4796]
          Length = 306

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/316 (8%), Positives = 80/316 (25%), Gaps = 41/316 (12%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
           F  +  ++K +     +    +    +  S + S+    +  G  IT       +     
Sbjct: 4   FNYMKSYMKKVAAVVAVAGVALST--AACSNSGSNSTVASYKGGKITQQQYYDEMK---- 57

Query: 66  QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
                +  K  +  +I+    +Q+  K   +   +          +      + + S   
Sbjct: 58  ---KSQAGKSTLANMIINRALEQQYGKYVSSKKVD----------KQYNNYKKQYGSQFS 104

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
                +               + +          + +              +  ++ +L 
Sbjct: 105 AVLQQNGMTASSFKENLKTNLLSEQALKHIKKITKKQEQQAW----KSYQPKVTVQHIL- 159

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYL--LESDL 242
                        +   +D  +         +  +K++         GK       ++ L
Sbjct: 160 ----------VAKKSTAQDIIKQLKDGKSFSSLAKKYSLDTATKNKAGKLPSFDSTDNTL 209

Query: 243 HPQFQNLLKK-SQNNT-TNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH 300
              F+    K       + P  +Q G   I + +    G     K  +  +   +  +  
Sbjct: 210 DSAFKTAAFKLKTGEVTSTPVKSQSGYHVIKMINHPAKGKFADHKKAIDDEIYASMAQDQ 269

Query: 301 E--AEYVKKLRSNAII 314
               + +  +   A +
Sbjct: 270 STMKDVIATVLKRADV 285


>gi|330937806|ref|XP_003305631.1| hypothetical protein PTT_18538 [Pyrenophora teres f. teres 0-1]
 gi|311317253|gb|EFQ86277.1| hypothetical protein PTT_18538 [Pyrenophora teres f. teres 0-1]
          Length = 191

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 8/105 (7%), Positives = 23/105 (21%), Gaps = 1/105 (0%)

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
            +           +         ++      Q +  +                  +    
Sbjct: 84  HRDSRRPASWREPKITRSLQEAREMIEGYHAQIKAYEDGTGEANAKSLSELATTESDCSS 143

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
               G   +  + D+  +F+       +   ++   T  GV  I 
Sbjct: 144 ARKGGDLGFFGKGDMQKEFEQAAFALEKGQVSDMVETASGVHLIQ 188


>gi|226500554|ref|NP_001150505.1| peptidyl-prolyl cis-trans isomerase 1 [Zea mays]
 gi|195639680|gb|ACG39308.1| peptidyl-prolyl cis-trans isomerase 1 [Zea mays]
          Length = 124

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 6/76 (7%), Positives = 17/76 (22%), Gaps = 1/76 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
               + +    +         +   + +        G         +   F++       
Sbjct: 45  DAAARLLDLRNQILSGQANFADLAARHSDCSSARRGGDLGTFGRRQMQKPFEDATYALKV 104

Query: 255 NNTTNPYVTQKGVEYI 270
              ++   T  GV  I
Sbjct: 105 GELSDIVDTDSGVHII 120


>gi|195448338|ref|XP_002071614.1| GK10078 [Drosophila willistoni]
 gi|194167699|gb|EDW82600.1| GK10078 [Drosophila willistoni]
          Length = 167

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 7/91 (7%), Positives = 18/91 (19%), Gaps = 1/91 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R   +   +     +           +              ++        G        
Sbjct: 73  RPSSWREENITRTKEEAQMLLEVYRNKIINEEATFDELARSYSDCSSAKRGGDLGKFGRG 132

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
           D+   F+      +    +    T  G+  I
Sbjct: 133 DMQAAFEKAAFALNVGQMSGIVDTDSGLHII 163


>gi|164659402|ref|XP_001730825.1| hypothetical protein MGL_1824 [Malassezia globosa CBS 7966]
 gi|159104723|gb|EDP43611.1| hypothetical protein MGL_1824 [Malassezia globosa CBS 7966]
          Length = 172

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 21/80 (26%), Gaps = 1/80 (1%)

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
                   +  +    S+  +        +++      S G         +   F++   
Sbjct: 89  KDEAITQLREFQQQLGSQPNVQTFSQLAGQYSDCSSARSGGDLGSFSRGQMQRPFEDAAF 148

Query: 252 K-SQNNTTNPYVTQKGVEYI 270
             S    ++   T  GV  I
Sbjct: 149 GLSVGEMSDIVETDSGVHLI 168


>gi|113868643|ref|YP_727132.1| parvulin-like peptidyl-prolyl isomerase [Ralstonia eutropha H16]
 gi|113527419|emb|CAJ93764.1| Parvulin-like peptidyl-prolyl isomerase [Ralstonia eutropha H16]
          Length = 250

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/270 (8%), Positives = 67/270 (24%), Gaps = 26/270 (9%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              I+ EV+   +  + + L           +  V++++ + L     ++ G+       
Sbjct: 4   IVRIDDEVLGFEEFVRLLKLTGQ-------FEGLVEQMVRDKLTVHAAKRQGVVVTPE-- 54

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                + A           +      +   +         +   + +   M +    E  
Sbjct: 55  --EIQERADQFRRVQGLHRAADMNHYLDALNISLDEFEAFVTDSLYQERMMEQV-CSEAA 111

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           + A             +   V+ S             K  +     +           + 
Sbjct: 112 VQAYFALNSPRFDSIEVSHIVVDSEG-----------KAKELISYLQDDPDAFAEMAREH 160

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQ-NLLKKSQNNTTNPYVTQKG--VEYIAICDKRDLG 279
           +        G+   +L   L    +  +      +   P+ +      E   + +K    
Sbjct: 161 SIADTRERGGEIGKVLRGSLKTDIEAKVFNAEPGDLLGPFPSADRSFFEVFLVREKHPAT 220

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
            +  +   +        +     E+V + R
Sbjct: 221 LDSEVAVEVRRLLREDWLMARAQEHVIEAR 250


>gi|118589929|ref|ZP_01547333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stappia aggregata
           IAM 12614]
 gi|118437426|gb|EAV44063.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stappia aggregata
           IAM 12614]
          Length = 630

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 8/128 (6%), Positives = 30/128 (23%), Gaps = 14/128 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +      ++  L    +++ F +  I  + +    +     +    ++  D  +  
Sbjct: 1   MLDALRKGAGTWVAKLFIALLIMSFAVWGISGFLTGVGQNT-AAKVGDTEVSLFDFDRAY 59

Query: 61  ALLKLQKINGELE-------------KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
                +                    +  + +L+ E       +   +      +     
Sbjct: 60  RQDLGRLAQQFGRQLTPAEGAALGVPQQTLGKLVAEAAMNNTAQNMKLGVSDERLATIIQ 119

Query: 108 QHARNTGL 115
                 G 
Sbjct: 120 SDPAFQGP 127


>gi|67539950|ref|XP_663749.1| hypothetical protein AN6145.2 [Aspergillus nidulans FGSC A4]
 gi|40738741|gb|EAA57931.1| hypothetical protein AN6145.2 [Aspergillus nidulans FGSC A4]
          Length = 210

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 8/164 (4%), Positives = 32/164 (19%), Gaps = 1/164 (0%)

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
                  S      F                ++++   +          +         +
Sbjct: 15  WEVRHSNSKNLPYYFNPATRESRWEPPADTDMETLKMYMATYHSGAATYHEAPSQEGKIR 74

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +       R   +   +     +   +      E       +  +     +     
Sbjct: 75  CSHLLVKHRDSRRPSSWREAEITRTKEEAREILRGHQERIMRGEIRLGDLAMSESDCSSA 134

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
              G   +    ++  +F+           ++   +  G+  I 
Sbjct: 135 RKKGDLGFFGRGEMQKEFEEAAFALQPGQVSDIVESGSGLHLIE 178


>gi|303316792|ref|XP_003068398.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240108079|gb|EER26253.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, putative
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 126

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 25/85 (29%), Gaps = 6/85 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               + ++A        K      +F+        G   + +   L   F+      + +
Sbjct: 43  EKHSKKEEALAKLRAGAKFDEVAREFSED-KARQGGSLGWKIRGSLDAAFEKAAYDLEPS 101

Query: 257 TTN-P----YVTQKGVEYIAICDKR 276
           TT  P      T  G   I +  ++
Sbjct: 102 TTASPKYAEVKTGFGYHIIMVEGRK 126


>gi|145355107|ref|XP_001421810.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582049|gb|ABP00104.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 95

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 7/78 (8%), Positives = 20/78 (25%), Gaps = 1/78 (1%)

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK- 252
            +  + + ++  +          +  +K +        G         +   F++     
Sbjct: 14  KEAAIDELLRYRDAVANGEATFADVAKKVSDCSSAKRGGDLGEFGPGQMQRAFEDATYAL 73

Query: 253 SQNNTTNPYVTQKGVEYI 270
                +    T  GV  I
Sbjct: 74  KIGEMSEAVETDSGVHVI 91


>gi|312079986|ref|XP_003142408.1| Pin1-type peptidyl-prolyl cis-trans isomerase [Loa loa]
 gi|307762427|gb|EFO21661.1| Pin1-type peptidyl-prolyl cis-trans isomerase [Loa loa]
          Length = 186

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/108 (11%), Positives = 28/108 (25%), Gaps = 1/108 (0%)

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
                +                I  +K   +  +    K  EE+  +  K     ++F+ 
Sbjct: 76  HCAHLLVKHNGSRRPSSWRSDVITRSKEDARKILIGYRKQIEEASDKKSKLRELAKEFSD 135

Query: 225 KIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIA 271
                  G   +     +   F++          ++   T  G+  I 
Sbjct: 136 CSSAKRGGDLGFFKRRQMQKSFEDAAFALGVGQLSDVVDTDSGLHLIY 183


>gi|213024001|ref|ZP_03338448.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 215

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/168 (11%), Positives = 50/168 (29%), Gaps = 20/168 (11%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     S+     +NG+ I+        
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL-IGGSNNYAAKVNGQEISRAQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 105 FFVQHARNT---GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
                             +++ +++ G+  + + Q L  Q     ++ 
Sbjct: 120 AIFATPAFQVDGKFDNNRYNAIVNQMGMTADQYTQALRNQLTTQQLIN 167


>gi|158423833|ref|YP_001525125.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Azorhizobium caulinodans ORS 571]
 gi|158330722|dbj|BAF88207.1| PPIC-type PPIASE domain protein [Azorhizobium caulinodans ORS 571]
          Length = 638

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/388 (8%), Positives = 90/388 (23%), Gaps = 86/388 (22%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI- 60
              +    S  I  +    + + F +  I S      S+     I G  I+     ++  
Sbjct: 11  LQNLRKGASGLIAKVFLLVLTVSFVLWGI-SGVFTNYSTGTVAEIGGTQISTDAYRQQYL 69

Query: 61  ------------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
                       A+   Q      ++  + ++I E    +   K G+      +      
Sbjct: 70  DQIQRIGRQAGRAITPDQARAFGFDRQVLNQMITEATLDEAARKLGLGMSDALIADSIRD 129

Query: 109 HARNTG-----LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND------------ 151
           +               F   L   G+ +  F      + +   ++++             
Sbjct: 130 NPALRPPGATAFDPAYFQQLLQANGLTEQRFLASERKRVLRQQLIESLGGARAPEVLKTA 189

Query: 152 --------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRTV-------- 183
                                       + ++ A     K +       +          
Sbjct: 190 VHSFENEERAVSYLDVTSSSVPAPAAPTDEQLKAYYDGHKVVFRAPEYRKLTLLVLTPAT 249

Query: 184 ----LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG------- 232
               +     +          R    E+  ++     ++ +  A  +  +  G       
Sbjct: 250 LAPWIQISDADAKAAYDRNAARFGTPEQRDVQQIVFPSEADAKA-ALDKIKGGTSFADIA 308

Query: 233 ----------KAQYLLESDL--HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
                         + +S +              + T++P   + G   + +        
Sbjct: 309 KARGLSDKDTNLGLVAKSAIIDPKVADAAFALPADGTSDPVQGRFGYALVHVTTIVPATV 368

Query: 281 EIALKAYLSAQNTPTK-IEKHEAEYVKK 307
           +    A + A       +E+   E + K
Sbjct: 369 K--PFAEVEAGLRRDLALERARRELLDK 394


>gi|154503863|ref|ZP_02040923.1| hypothetical protein RUMGNA_01689 [Ruminococcus gnavus ATCC 29149]
 gi|153795462|gb|EDN77882.1| hypothetical protein RUMGNA_01689 [Ruminococcus gnavus ATCC 29149]
          Length = 350

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/332 (9%), Positives = 80/332 (24%), Gaps = 34/332 (10%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +    K      V  I   V I    +   +     T+  E ++ G  +    + + Q  
Sbjct: 1   MVGLKKRGVITAVAGILAAVTITGCSAAPDNDATVVTVGTEKVSYGVANFYARMQQAQYE 60

Query: 69  -------------------------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
                                       ++   ++ L    L KQ   +  +        
Sbjct: 61  SFYAGLMGMSADTMWSQEVEEGKTYEENMKDSILESLENMYLVKQHASEYKVELTDEEKK 120

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
                       +  +    +         + +   IQ      +K        + +   
Sbjct: 121 KIDKAAEEFVEDNTLEDKEVVSGYKKYVKEYLELATIQQKMDAPMKEGVDENVSDEDAAQ 180

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
              +    + T ++   ++V     D++ + +    +   D   +      +        
Sbjct: 181 KKIEYVQFSYTKKDDSGQSVQM--TDDEKKAEKEKAQTFLDTVSADPDKDMNAAAASAEK 238

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIA 283
                    ++  L    L         ++  + T+   T  G+    +  K     +  
Sbjct: 239 EVQTATFDSESSTLNADLLK---AADALENVGDVTSLIETDDGIYVAKLTSK----LDRE 291

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                  +    + +K   + V+  R    I 
Sbjct: 292 ATDQKKKEIVEERKQKQYEDQVETWRKETDIK 323


>gi|94500922|ref|ZP_01307447.1| Parvulin-like peptidyl-prolyl isomerase [Oceanobacter sp. RED65]
 gi|94426862|gb|EAT11845.1| Parvulin-like peptidyl-prolyl isomerase [Oceanobacter sp. RED65]
          Length = 89

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 8/71 (11%), Positives = 23/71 (32%), Gaps = 1/71 (1%)

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQ 264
            ++           ++ ++       GK   + E D   + +  L+ +       P  T 
Sbjct: 18  IKNLEEGADFAQLAQEHSACPSAKDGGKLGNMSEQDFPAEIKEALESAPLGTVVGPIETH 77

Query: 265 KGVEYIAICDK 275
            G+  +   ++
Sbjct: 78  HGIHILRKDNR 88


>gi|257456351|ref|ZP_05621548.1| basic membrane protein [Treponema vincentii ATCC 35580]
 gi|257446437|gb|EEV21483.1| basic membrane protein [Treponema vincentii ATCC 35580]
          Length = 360

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/344 (12%), Positives = 102/344 (29%), Gaps = 49/344 (14%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K      ++ +   +   +  +    + ++ T     IT G +  R++ L+ +      
Sbjct: 1   MKKNVITLLIALSLSIGAFAQTNLQPIAEVKLT-GRAPITLGQLKTRVSALEKEIGRKMT 59

Query: 73  ---EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT---------------- 113
               +  +  LI E L  Q  EK GI    + VN +F ++  +                 
Sbjct: 60  FAERQQTLDGLINERLIVQAAEKDGIKIMDSEVNNYFNEYVSSQLGQQISEADFAKLIKE 119

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV----KNDFMLKYGNLEMEIPANKQK 169
             +         + G+    FK +L  Q      V    + +        + +I +  + 
Sbjct: 120 KTNMSLDEYMKAQNGMTLAEFKSFLRTQLTAQAYVMQKKQKELQSIPSPTDEQIRSYYEV 179

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
            K   V+   ++  L   P     +      +    ++         +   K   K    
Sbjct: 180 NKQSFVQPDTVQLFLVVAPKGDKPSAAEKTIKDIQ-KKLTANPKDTADIRTKSQEKNSTY 238

Query: 230 SIGKAQYLLESDLH--------PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG-- 279
             G+  ++ ++ L          +   +        +    T    +   + +K+D    
Sbjct: 239 QAGEI-FVSKTSLAAEQLGIPMDELLKIFNMKVGEVSPITETAVNYQCFVVIEKKDAKIL 297

Query: 280 ---------GEIALKAYLSAQNTPTKIEKHEAEYV----KKLRS 310
                    G ++L  Y+       +  +   + +     +LR 
Sbjct: 298 GLSDVVEPGGNVSLYEYIKKMVIMQRQNEALNDALVSVTNELRK 341


>gi|219118791|ref|XP_002180162.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408419|gb|EEC48353.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 163

 Score = 51.2 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/103 (10%), Positives = 30/103 (29%), Gaps = 1/103 (0%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
              +     + +  +  S    + + QG ++   ++A +            ++ +     
Sbjct: 57  HKDSKRPSSWRVPKITISREQAREELQGLLEILQEEAHDMGSLKATFEELAKEESDCSSA 116

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
              G         + P+F++          +    T  GV  I
Sbjct: 117 KRGGDLGVFGRGKMRPEFEHAAFALDVGQLSGLIDTSSGVHII 159


>gi|328865110|gb|EGG13496.1| hypothetical protein DFA_11257 [Dictyostelium fasciculatum]
          Length = 374

 Score = 50.8 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/91 (10%), Positives = 20/91 (21%), Gaps = 1/91 (1%)

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
                  +     +  + K     +       K      K++        G   +     
Sbjct: 281 RSWRQENEITRTKEEAMVKLQGYRDMITSGSHKFDELAHKYSDCSSAKRGGDLGFFTRGQ 340

Query: 242 LHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
           +   F++          T    T  GV  I 
Sbjct: 341 MQKAFEDASFALQVGEMTEIVSTDSGVHIIE 371


>gi|323438380|gb|EGA96144.1| peptidyl-prolyl cis-isomerase [Staphylococcus aureus O11]
 gi|323441708|gb|EGA99353.1| peptidyl-prolyl cis-isomerase [Staphylococcus aureus O46]
          Length = 213

 Score = 50.8 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 55/181 (30%), Gaps = 8/181 (4%)

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
                ++    +  +  + +++I  ++ K  +      LI+          L ++   QK
Sbjct: 3   DKYKENLRTAAYHKELLSDKIKISDSEIKEDSKKASHILIKVKSKKSDKEGLDDKEAKQK 62

Query: 201 RIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTT 258
             +  +E      K     +K +         G+  Y+L+      F+    K      +
Sbjct: 63  AEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDKDFEKALFKLKDGEVS 122

Query: 259 NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE---KHEAEYVKKLRSNAIIH 315
           +   +  G   I            + K  L  +    K++   K   +  K L     + 
Sbjct: 123 DVVKSSFGYHIIKAD---KPTDFNSEKQSLKEKLVDQKVQKNPKLLTDAYKDLLKEYDVD 179

Query: 316 Y 316
           +
Sbjct: 180 F 180


>gi|299470724|emb|CBN79770.1| peptidyl-prolyl cis-trans isomerase C [Ectocarpus siliculosus]
          Length = 184

 Score = 50.8 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 2/126 (1%)

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKA 234
            +    R         + + +    K  +  EE    L K     EK ++       G+ 
Sbjct: 55  EKMSDPRYARVRHILVEEKGEEGRSKLEEAKEEIAGDLDKFSEVAEKMSTCTSAPRGGRL 114

Query: 235 QYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICD-KRDLGGEIALKAYLSAQN 292
           + L   +  P+F ++           P  TQ G   I +    +       L   +  + 
Sbjct: 115 KLLARGETVPEFDDIAFNGELGVVHGPVETQFGTHLIYVESCNKPQNTWKMLFDDIVDKV 174

Query: 293 TPTKIE 298
           +  + E
Sbjct: 175 SGKEEE 180


>gi|326403424|ref|YP_004283505.1| hypothetical protein ACMV_12760 [Acidiphilium multivorum AIU301]
 gi|325050285|dbj|BAJ80623.1| hypothetical protein ACMV_12760 [Acidiphilium multivorum AIU301]
          Length = 628

 Score = 50.8 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/155 (10%), Positives = 37/155 (23%), Gaps = 12/155 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M S +   L ++I       ++ +F    + S      +S    T+ G+ I    ++   
Sbjct: 1   MLSMIRQLLDNWIVRAFFVVLIGVFVFWGVSSVVMGIGASDAIATVGGQPIKIEAVNAAY 60

Query: 61  ALLKLQKINGE------------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
                                      A+   I     + E  + G+      +      
Sbjct: 61  QRTLNAYATQNSGREPSKGERRLFADQALGTAIDRAAMELEARRMGVVAPPAAIRQQVFA 120

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
                G   +   +  +      N        +  
Sbjct: 121 IPAFHGPDGKFDKATFNAVLANHNLTPAAFMAEIA 155


>gi|148260238|ref|YP_001234365.1| hypothetical protein Acry_1235 [Acidiphilium cryptum JF-5]
 gi|146401919|gb|ABQ30446.1| hypothetical protein Acry_1235 [Acidiphilium cryptum JF-5]
          Length = 628

 Score = 50.8 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/155 (10%), Positives = 37/155 (23%), Gaps = 12/155 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M S +   L ++I       ++ +F    + S      +S    T+ G+ I    ++   
Sbjct: 1   MLSMIRQLLDNWIVRAFFVVLIGVFVFWGVSSVVMGIGASDAIATVGGQPIKIEAVNAAY 60

Query: 61  ALLKLQKINGE------------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
                                      A+   I     + E  + G+      +      
Sbjct: 61  QRTLNAYATQNSGREPSKGERRLFADQALGTAIDRAAMELEARRMGVVAPPAAIRQQVFA 120

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
                G   +   +  +      N        +  
Sbjct: 121 IPAFHGPDGKFDKATFNAVLANHNLTPAAFMAEIA 155


>gi|260891097|ref|ZP_05902360.1| putative chaperone SurA [Leptotrichia hofstadii F0254]
 gi|260859124|gb|EEX73624.1| putative chaperone SurA [Leptotrichia hofstadii F0254]
          Length = 608

 Score = 50.8 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 50/176 (28%), Gaps = 6/176 (3%)

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
           +     N  +  Y   E  + A     K+       I   +               K+  
Sbjct: 334 YSQKYYNYLIDTYKPDEAALQAKFNAKKDSYNIPNSIGGYVIGEEYQAGDGDFEAAKKQA 393

Query: 204 DAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYL-LESDLHPQFQNLLKK-SQNNTTNP 260
                         K ++F+       + G        S L P+F N +K     +   P
Sbjct: 394 QDIMKTTNKDNFAAKAKEFSKDPGSANNGGSLGETADLSQLVPEFANAVKSGKAGDIVGP 453

Query: 261 YVTQKGVEYIAICDKRDLGGEIALKAYLSAQN-TPTKIEKHEAEYVKKLRSNAIIH 315
             TQ G   I I  K      +A  +++          ++   + V+ L+  A I 
Sbjct: 454 IKTQFGYHIIYIQSKDANNENVAKVSHILITPTISEASKQKIIKKVQDLK--AEIE 507



 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/251 (12%), Positives = 76/251 (30%), Gaps = 25/251 (9%)

Query: 3   SKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIAL 62
            K    +S  +  +    +LI   +    +         +  T+NG  I   D  +    
Sbjct: 8   KKAIQIVSAVMIGIFGIAMLITGILFLKNNVFGAMNHREVIATVNGAKIYRDDFDRESYG 67

Query: 63  LKLQK------------------------INGELEKIAVQELIVETLKKQEIEKSGITFD 98
           LK Q                          +  + +  +Q +I + +        GI   
Sbjct: 68  LKAQLSEINQQKIQQLSQVGVSAENIKNIPDNIINEYVLQLMINKEVLLSSAHNLGIKVS 127

Query: 99  SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF-MLKYG 157
              +N  F  + + + ++ ++F+  L  +G     FK+ +  + I   + +  F   K  
Sbjct: 128 GAEINKEFNNYQKQSQMNRKEFADHLRNRGYNITSFKKAIKDEKIIEKMREKIFSNDKVT 187

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
           + E++    + K     + +           +        + K      + + ++     
Sbjct: 188 DEEIKKAYERNKYTQAFLNQDFEDVKEQIRENMTQDKNIMILKSYIAKAKEKTKIVFKNK 247

Query: 218 KLEKFASKIHD 228
             EK  + +  
Sbjct: 248 DFEKIYASMTA 258


>gi|327184064|gb|AEA32511.1| peptidylprolyl isomerase [Lactobacillus amylovorus GRL 1118]
          Length = 301

 Score = 50.8 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/313 (7%), Positives = 75/313 (23%), Gaps = 41/313 (13%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +  ++K +     +    +    +  S   S+    +  G  IT       +        
Sbjct: 1   MKSYMKKIAAVVAVAGVALST--AACSNGGSNSTVASYKGGKITQQQYYDEMK------- 51

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             +  K  +  +I+    +Q+  K   +   +     + +   +   +    +       
Sbjct: 52  KSQAGKSTLANMIINRALEQQYGKYVSSKKVDKQYNNYKKQYGSQFSAVLQQNGMTASSF 111

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
             +                +      +                     +  ++ +L    
Sbjct: 112 KENLKTNLLSEQALKHIKKISKKQEQQVWKS--------------YQPKVTVQHIL---- 153

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYL--LESDLHPQ 245
                     +   +   +         +  +K++         GK       ++ L   
Sbjct: 154 -------VAKKSTAQSIIKQLKDGKSFKSLAKKYSLDTATKNKAGKLPAFDSTDNTLDSS 206

Query: 246 FQNLLKK-SQNNT-TNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE-- 301
           F+    K       + P  +Q G   I +      G     K  +  +   +  +     
Sbjct: 207 FKTAAFKLKTGEVTSTPVKSQSGYHVIKMISHPAKGKFADHKKTIDDEIYASMAQDQATM 266

Query: 302 AEYVKKLRSNAII 314
            + +  +   A +
Sbjct: 267 KDVISTVLKRADV 279


>gi|310639535|ref|YP_003944293.1| ppic-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           polymyxa SC2]
 gi|309244485|gb|ADO54052.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
           polymyxa SC2]
          Length = 316

 Score = 50.8 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/310 (11%), Positives = 85/310 (27%), Gaps = 27/310 (8%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSR-----IRTTINGEVITDGDISKRIALLKLQKIN 69
           ++ T  V  +  ++ +         S+         +  E I++      +         
Sbjct: 13  IILTVSVAALGGLIMLRGLLKPGDVSKDDGDHTVAEMGQEGISEEQWVAELKKRYGTNT- 71

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
                  + +++     + E ++ GI      +     Q ++      +   ++ ++   
Sbjct: 72  -------LLQMLNRKAVQAEAKRLGIKITQEDLQQVLEQDSK----GYDSEHAYFEEMQR 120

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                   L  ++ +   ++          E EI    ++           +  L +I  
Sbjct: 121 QFGLNPVDLRNEAEYRIGLEKIATQGIQVEETEIDEYWEQHPEEFA--VGKQIKLAAIYV 178

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
            K +    +  R+K  E   + L +                +G              +  
Sbjct: 179 AKAEEAETLLDRVKQGESFDMLLREHSVSGNPLGEDHSG-QLGWLDEYDPFQPEAVMKAA 237

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT--KIEKHEAEYVKK 307
            + S  +   P     G   I + D R        K  +  Q   +    +    + V+K
Sbjct: 238 RELSSGDVAGPISVNDGYAVIYVQDVR--LKNSPDKQQIRQQIRRSLALAQAAPLDEVEK 295

Query: 308 -LRSN--AII 314
            LR    A I
Sbjct: 296 SLRDKYGARI 305


>gi|289626311|ref|ZP_06459265.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289650291|ref|ZP_06481634.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|330866996|gb|EGH01705.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 91

 Score = 50.8 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 6/77 (7%), Positives = 20/77 (25%), Gaps = 1/77 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-N 255
              +  +  +    +        +K +S       G    +    +      ++ K    
Sbjct: 11  KTAEEAEQLKLRIAKGEAFDVLAKKHSSCPSGKRGGDLGEVRPGQMVGAIDQVIFKKPLR 70

Query: 256 NTTNPYVTQKGVEYIAI 272
               P  ++ G   + +
Sbjct: 71  MVHGPIKSKFGYHLVQV 87


>gi|125776498|ref|XP_001359294.1| GA11241 [Drosophila pseudoobscura pseudoobscura]
 gi|54639037|gb|EAL28439.1| GA11241 [Drosophila pseudoobscura pseudoobscura]
          Length = 130

 Score = 50.8 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------L 249
             Q +I +A E      K       ++        G   + +   +   FQ+        
Sbjct: 45  EKQGKIMEAMEKLKAGQKFPEVATAYSED-KARQGGDLGWQIRGAMVGPFQDAAFALPIS 103

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKR 276
              +   T  P  T+ G   I +  K+
Sbjct: 104 NVNNPVYTDPPVKTKFGYHIIMVEGKK 130


>gi|328771505|gb|EGF81545.1| hypothetical protein BATDEDRAFT_10474 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 160

 Score = 50.8 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/91 (9%), Positives = 21/91 (23%), Gaps = 1/91 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R   +   +     +  +Q       +            +  +        G        
Sbjct: 66  RPSSWKEANISRSKEEAMQIIQNFRAKIESGEVDLSTLAKTESDCSSASRGGDLGKFGYG 125

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            +   F+           +NP V+  G+  I
Sbjct: 126 QMQASFEQAAFALKVGELSNPVVSDSGIHLI 156


>gi|299742349|ref|XP_001832406.2| peptidyl-prolyl cis-trans isomerase pin4 [Coprinopsis cinerea
           okayama7#130]
 gi|298405143|gb|EAU89440.2| peptidyl-prolyl cis-trans isomerase pin4 [Coprinopsis cinerea
           okayama7#130]
          Length = 139

 Score = 50.8 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/86 (10%), Positives = 26/86 (30%), Gaps = 7/86 (8%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               +  +A +            ++++      + G   +++   +   FQ+       +
Sbjct: 55  EKHSKASEALQKIQEGQAFNKVAQEYSED-KAKAGGSLGWMVRGSMVGAFQDAAFALTPS 113

Query: 257 T------TNPYVTQKGVEYIAICDKR 276
           T      +    T  G   I +  +R
Sbjct: 114 TVDKPITSGLVKTNFGYHIIMVEGRR 139


>gi|326470862|gb|EGD94871.1| peptidyl-prolyl cis-trans isomerase [Trichophyton tonsurans CBS
           112818]
 gi|326478426|gb|EGE02436.1| peptidyl-prolyl cis-trans isomerase pin4 [Trichophyton equinum CBS
           127.97]
          Length = 132

 Score = 50.8 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 27/85 (31%), Gaps = 6/85 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               + ++A E      K      +F+        G   + +   L   F+    + + +
Sbjct: 49  EKHSKKEEALEKLRAGAKFDEVAREFSED-KARQGGSLGWKVRGSLDAAFEKAAYELEPS 107

Query: 257 TTN-P----YVTQKGVEYIAICDKR 276
           TT  P      T  G   I +  ++
Sbjct: 108 TTGNPKYVEVKTGFGYHIIMVEGRK 132


>gi|315055243|ref|XP_003176996.1| peptidyl-prolyl cis-trans isomerase pin4 [Arthroderma gypseum CBS
           118893]
 gi|311338842|gb|EFQ98044.1| peptidyl-prolyl cis-trans isomerase pin4 [Arthroderma gypseum CBS
           118893]
          Length = 130

 Score = 50.8 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 27/85 (31%), Gaps = 6/85 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               + ++A E      K      +F+        G   + +   L   F+    + + +
Sbjct: 47  EKHSKKEEALEKLRAGAKFDEVAREFSED-KARQGGSLGWKVRGSLDAAFEKAAYELEPS 105

Query: 257 TTN-P----YVTQKGVEYIAICDKR 276
           TT  P      T  G   I +  ++
Sbjct: 106 TTGNPKYVEVKTGFGYHIIMVEGRK 130


>gi|153807136|ref|ZP_01959804.1| hypothetical protein BACCAC_01413 [Bacteroides caccae ATCC 43185]
 gi|149130256|gb|EDM21466.1| hypothetical protein BACCAC_01413 [Bacteroides caccae ATCC 43185]
          Length = 330

 Score = 50.8 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/188 (11%), Positives = 44/188 (23%), Gaps = 6/188 (3%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIAL--LKLQKINGELEKIAVQE 79
           L+      I    S      I   +NGE I   ++S +       L     E++   +  
Sbjct: 6   LLFLITFFISCNISNVNKDEIVAEVNGEKIYLSELSSQSKQEIFDLLNTAYEIKNRVLTN 65

Query: 80  LIVETLKKQEIEKSGI----TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           LI + L +   +   +      D        +         A +  SF  K  +      
Sbjct: 66  LIKQKLLENTAKNKNMSLEEFLDFLVQQKLLLDQDSIKKYYAINTESFYAKNSLIPLKKG 125

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
                 S    +          +L  +    +           +    +    +      
Sbjct: 126 TIEEELSFQQRLRNRIVQALVDSLYQKADIKRYIYPPKQPECVVRDLCVHYRGNLDSSTS 185

Query: 196 GFVQKRIK 203
             V     
Sbjct: 186 FIVASDYN 193


>gi|242077546|ref|XP_002448709.1| hypothetical protein SORBIDRAFT_06g031895 [Sorghum bicolor]
 gi|241939892|gb|EES13037.1| hypothetical protein SORBIDRAFT_06g031895 [Sorghum bicolor]
          Length = 209

 Score = 50.8 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/116 (9%), Positives = 29/116 (25%), Gaps = 1/116 (0%)

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
            + E ++ A+   +K+   R          +  +               ++      K  
Sbjct: 91  SSAEEKVRASHILIKHEGSRRKASWRDPEGVAISATTRDDAADLVRALRDQIVSGDRKFE 150

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
           +   + +        G         +   F+           ++   T+ GV  I 
Sbjct: 151 DIAAENSVCSSAKRGGDLGSFGRGKMQKAFEKAAFALKVGEISDVVDTESGVHIIK 206


>gi|312119670|ref|XP_003151720.1| hypothetical protein LOAG_16184 [Loa loa]
 gi|307753115|gb|EFO12349.1| hypothetical protein LOAG_16184 [Loa loa]
          Length = 55

 Score = 50.8 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 7/55 (12%)

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTT-------NPYVTQKGVEYIAICDKR 276
           ++ G   ++    +   FQ+       +T         P  TQ G   I +  K+
Sbjct: 1   MTGGDLGWMTRGSMVGTFQDAAFALPISTVDKPVYTDPPIRTQFGYHIIMVEAKK 55


>gi|238024473|ref|YP_002908705.1| hypothetical protein bglu_2g10690 [Burkholderia glumae BGR1]
 gi|237879138|gb|ACR31470.1| Hypothetical protein bglu_2g10690 [Burkholderia glumae BGR1]
          Length = 278

 Score = 50.8 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 44/162 (27%), Gaps = 9/162 (5%)

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK-------R 201
           K+ FM +    E EI A   K K+      L   ++    D         +K       +
Sbjct: 111 KDYFMRQITPSEAEISAYYNKHKSDYNLYSLSHILVKFEKDPSNLPAEQAKKIEAQAFNK 170

Query: 202 IKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTN 259
            +  E              + +      +  G+    +   L P F+  +    Q + T 
Sbjct: 171 AQAIEARLKAGADFHELAAQLSDDANSRIDGGRVPETMARFLAPAFKPEILAAKQGDITP 230

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE 301
           P  +  G   I +               ++        EK  
Sbjct: 231 PLKSSFGYHIIMVEGVVPSDMARNRADVINDIREGKLAEKQI 272


>gi|282891870|ref|ZP_06300349.1| hypothetical protein pah_c200o014 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498130|gb|EFB40470.1| hypothetical protein pah_c200o014 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 354

 Score = 50.8 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/330 (11%), Positives = 104/330 (31%), Gaps = 36/330 (10%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWA----------MSSRIRTTINGEVITDGDISKRIALL 63
           K +  + V        I      +          +++R+  T NG++IT  D+ K++ ++
Sbjct: 5   KKVLHFLVAFAALSSTIPLAAEPSLFRSQPEKIHVNNRVLATTNGKIITVMDVMKKMDIV 64

Query: 64  KLQKIN-------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
             +                       +Q+LI + L   + E+  +   +  V     +  
Sbjct: 65  FYRNFPEYASSVPARLQFYQTNWSDVLQDLIDKELVMADAEEMKLPLTNGDVRQEMEEIF 124

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
               +   D +     +          +     +   V      +     ++    +Q  
Sbjct: 125 GPDIIHNLDRAGLTYDEAWNSIKGDIIIRRMLYYR--VNTKAQAQATPQAIQTA-YEQYA 181

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK-FASKIHDV 229
           K     +     ++    +   +      +  +  +++ +++    + L+K     I  V
Sbjct: 182 KENVRPKEWTYYMISVRDEQDEKGAKIANQIYQQLQKTPVKIETLQDNLKKWLGDNIAQV 241

Query: 230 SIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPY--VTQKG----VEYIAICDKRD--LGG 280
           ++      +E+++  + + +    S  N + P    ++           +          
Sbjct: 242 NVSTKFSHMENEVSDENKQILATLSPGNYSKPIAQKSRATKSTVYRLFYLDSMNPGGAPP 301

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
              +K  + +  T   I K  A Y+++LR+
Sbjct: 302 FDEVKDEIKSYLTDEAISKETASYLERLRA 331


>gi|240849525|ref|NP_001155773.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4
           [Acyrthosiphon pisum]
 gi|239789189|dbj|BAH71234.1| ACYPI008778 [Acyrthosiphon pisum]
          Length = 126

 Score = 50.8 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK---- 252
             Q ++ +A E      K       ++        G   +++   +   FQ+        
Sbjct: 41  EKQSKVLEAMEKLKAGVKFNEVATLYSED-KARQGGDLGWMIRGSMVGPFQDAAFALSVS 99

Query: 253 ---SQNNTTNPYVTQKGVEYIAICDKR 276
              S   T  P  T+ G   I I  K+
Sbjct: 100 SLASPVYTDPPVKTKFGYHIIMIEGKK 126


>gi|163788664|ref|ZP_02183109.1| possible peptidyl-prolyl cis-trans isomerase [Flavobacteriales
           bacterium ALC-1]
 gi|159875901|gb|EDP69960.1| possible peptidyl-prolyl cis-trans isomerase [Flavobacteriales
           bacterium ALC-1]
          Length = 647

 Score = 50.8 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/276 (9%), Positives = 60/276 (21%), Gaps = 19/276 (6%)

Query: 60  IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
           +   K    N   E      L+ E   +   + +                     + A  
Sbjct: 92  LRYKKQLTKNYLSENKVTDVLVKEAYDRSNQDINASHILVRLAETETDTLKAYNEVLALR 151

Query: 120 FSSFLDKQGIGDNHFKQ---YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
             +  +                     +    K  +  +       +       +     
Sbjct: 152 ERAISEGFDKVKTEVHNGKTIFLEDLGYFSAFKMVYDFETAAYNTPVDEISMPFRTQFGY 211

Query: 177 EYLIRTVLFSIPDNKLQNQGFV-----------QKRIKDAEESRLRLPKDCNKLEKFASK 225
             +                  V           ++RI D  +   +        ++F+  
Sbjct: 212 HVVWVKEKRQSRGTVTAAHIMVALKQKDSLLDPEQRINDIYKKLNQGENFDALAKQFSDD 271

Query: 226 -IHDVSIGKAQYLLESDLHPQF---QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
                  GK        L  +    Q    K+  + + P+ T  G   +     + +   
Sbjct: 272 KSSSNKGGKLSPFKSGQLSSEEFESQAFGLKADGDVSKPFKTAYGWHIVKRIKLKPIQDF 331

Query: 282 IALKAYLSAQNTPTKIEKHEA-EYVKKLRSNAIIHY 316
             LK  L  +       K      V +L+    + Y
Sbjct: 332 KDLKPSLEVKVKRDSRSKLINAAMVSELKKRYNMSY 367


>gi|313222184|emb|CBY39168.1| unnamed protein product [Oikopleura dioica]
          Length = 132

 Score = 50.8 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             Q ++ +A                ++      S G   ++L   +   FQ    +   +
Sbjct: 47  EKQSKVLEAMGKLKEGQAFNTVATNYSED-KARSGGSLGWMLRGTMVGPFQEAAFQLPIS 105

Query: 257 TT-------NPYVTQKGVEYIAICDKR 276
           T         P  T+ G   I I  K+
Sbjct: 106 TCSNPSYTDPPVKTKFGYHIIMIEGKK 132


>gi|320581233|gb|EFW95454.1| Peptidylprolyl-cis/trans-isomerase (PPIase) [Pichia angusta DL-1]
          Length = 469

 Score = 50.8 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 8/92 (8%), Positives = 22/92 (23%), Gaps = 1/92 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R   +   +     +  V+       +             + +        G   Y    
Sbjct: 375 RPSSWKEQNITRTKEEAVELIKGYKAQIESGEASFEEIASEHSDCSSHSKNGDLGYFGPG 434

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
           ++ P F+           ++   +  G+  I 
Sbjct: 435 EMQPSFEKAAFGLQVGELSDVVESDSGIHLIE 466


>gi|148544489|ref|YP_001271859.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lactobacillus
           reuteri DSM 20016]
 gi|184153854|ref|YP_001842195.1| peptidylprolyl isomerase [Lactobacillus reuteri JCM 1112]
 gi|227363083|ref|ZP_03847219.1| peptidylprolyl isomerase [Lactobacillus reuteri MM2-3]
 gi|325682810|ref|ZP_08162326.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus reuteri MM4-1A]
 gi|148531523|gb|ABQ83522.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lactobacillus
           reuteri DSM 20016]
 gi|183225198|dbj|BAG25715.1| peptidylprolyl isomerase [Lactobacillus reuteri JCM 1112]
 gi|227071904|gb|EEI10191.1| peptidylprolyl isomerase [Lactobacillus reuteri MM2-3]
 gi|324977160|gb|EGC14111.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus reuteri MM4-1A]
          Length = 312

 Score = 50.8 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/290 (10%), Positives = 82/290 (28%), Gaps = 34/290 (11%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           + +  ++ I   V ++     A  ++   T +G  IT+ +    +             K 
Sbjct: 1   MKSKKLIAIIAGVALM-MPLAACGNKAVATTSGGKITESEYYSSMKQTSA-------GKQ 52

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +Q++I++ + +++  K                         +  + +   +    + F 
Sbjct: 53  VLQQMILDKVLEKQYGKEV--------------------SDKQVNAQYNTYKNEYGSDFN 92

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
            YL  Q++    +K                          +++             + ++
Sbjct: 93  AYLQSQNLTEKSLKQQIRSNLLLTAA-ARHYSHITTKQINKQWTKYQPKVQTATILVGSK 151

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYL--LESDLHPQFQNLLKK 252
              +  I    +S  +        +  +       + GK       ++ L   ++    K
Sbjct: 152 SDAEDIINQLNDSSNKYKTFKKLAKSKSTDSQTKNNGGKLPAFDNTDNQLDSAYKKAAFK 211

Query: 253 SQNN--TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH 300
            +    TT P  T  G + I + +    G +      L  Q     +   
Sbjct: 212 LKTGEYTTTPVKTDDGYQVIYMIEHPAKGKKSQHINDLKNQIVQENMNNQ 261


>gi|297696521|ref|XP_002825436.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4-like [Pongo abelii]
          Length = 127

 Score = 50.8 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 21/78 (26%), Gaps = 8/78 (10%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN-------LLKKS 253
           +I +A E      +      +++        G   ++    +   FQ             
Sbjct: 50  KIMEAMEKLKSGMRFNEVATQYSE-YKARQGGDLGWMTRGSMVGPFQEAAFTLPISGMDK 108

Query: 254 QNNTTNPYVTQKGVEYIA 271
              T  P  T+ G   I 
Sbjct: 109 PVFTDPPVKTKFGYHIIM 126


>gi|119503111|ref|ZP_01625196.1| PpiC-type peptidyl-prolyl cis-trans isomerase [marine gamma
           proteobacterium HTCC2080]
 gi|119461457|gb|EAW42547.1| PpiC-type peptidyl-prolyl cis-trans isomerase [marine gamma
           proteobacterium HTCC2080]
          Length = 297

 Score = 50.8 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/197 (8%), Positives = 45/197 (22%), Gaps = 9/197 (4%)

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
                  +   A +           +  +  L +E     +              +L   
Sbjct: 90  YHQFLFKQLETARELDKQLFQNELVLPDFEVLALERYKISKNDIAPVPEIREASHILRLC 149

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKA--QYLLESDLHP 244
            DN  +    ++      +    +     N   +F+         G+       +++   
Sbjct: 150 TDNCDEASEAIETLQSL-KNRLEQGESFANLAIEFSQDPGSKTRGGRLSQGIERDAENVD 208

Query: 245 QF---QNLLKKSQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEK 299
           Q               ++   ++ G   + +             ++  L A+      + 
Sbjct: 209 QVVRDALFAIPEVGGFSDIVRSRFGFHILKLESITASRTRSFEEVRPALVAEIEKRFRQD 268

Query: 300 HEAEYVKKLRSNAIIHY 316
              E +  L     I  
Sbjct: 269 AYRERLLSLAPEETIEI 285


>gi|255579823|ref|XP_002530749.1| 50S ribosomal protein L20, putative [Ricinus communis]
 gi|223529713|gb|EEF31655.1| 50S ribosomal protein L20, putative [Ricinus communis]
          Length = 224

 Score = 50.8 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 19/76 (25%), Gaps = 1/76 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQN 255
            V +     E+      K  +   +F+        G         +   F++        
Sbjct: 146 AVSQLKAFREDIVSGKAKFEDIASRFSDCSSAKRGGDLGPFSRGQMQKPFEDATYALKVG 205

Query: 256 NTTNPYVTQKGVEYIA 271
             +    T  GV  I 
Sbjct: 206 EISEIVDTDSGVHIIM 221


>gi|119192926|ref|XP_001247069.1| hypothetical protein CIMG_00840 [Coccidioides immitis RS]
 gi|303312467|ref|XP_003066245.1| peptidyl-prolyl cis-trans isomerase ssp-1, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240105907|gb|EER24100.1| peptidyl-prolyl cis-trans isomerase ssp-1, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|320033674|gb|EFW15621.1| peptidyl-prolyl cis-trans isomerase [Coccidioides posadasii str.
           Silveira]
          Length = 177

 Score = 50.8 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/111 (8%), Positives = 25/111 (22%), Gaps = 1/111 (0%)

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           +     +    +       R   +   +     +  ++      +          N    
Sbjct: 64  QKEGQIRASHLLIKHRDSRRPTSWREANITRSKEEAIEILNGHLQRIMSGEATLGNIAMT 123

Query: 222 FASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
            +        G   +     +  +F++          +    TQ GV  I 
Sbjct: 124 ESDCSSARKKGDLGFFGRGVMQKEFEDASFALKPGQISGIVETQSGVHLIE 174


>gi|194897597|ref|XP_001978686.1| GG19723 [Drosophila erecta]
 gi|190650335|gb|EDV47613.1| GG19723 [Drosophila erecta]
          Length = 169

 Score = 50.8 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/165 (7%), Positives = 35/165 (21%), Gaps = 1/165 (0%)

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
           +  +       E  +S         N + +            K        +   + P  
Sbjct: 1   MPDSEQLPEGWEKRTSRSTGMSYYLNVYTKESQWDQPTEPAKKTGGAGGASSGSGDAPDE 60

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
            Q +  +   +   R   +   +     +           +   +          ++   
Sbjct: 61  VQCLHLLVKHKGSRRPSSWREANITRTKEEAQMLLEVYRNKIVQQEATFDELARSYSDCS 120

Query: 227 HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                G         +   F+    K +    +    +  G+  I
Sbjct: 121 SSKRGGDLGKFGRGQMQAAFEEAAFKLNVGQLSGIVDSDSGLHII 165


>gi|295108815|emb|CBL22768.1| FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)
           [Ruminococcus obeum A2-162]
          Length = 510

 Score = 50.4 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/340 (9%), Positives = 88/340 (25%), Gaps = 46/340 (13%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSS--RIRTTINGEVITDGDISKRIALLKLQKI-- 68
           +   T    L       +++          +   T++G  I  G +S  +   + Q    
Sbjct: 4   MTKKTAVVALAGVMAAGMLTGCGEKALDGTKTVATVDGTEIPLGMLSLSVREGQAQAEAM 63

Query: 69  -----------------------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
                                    +  + A++++ +  + K++     +    +     
Sbjct: 64  YKSFMGGSDYSIWGTEAEKGKTYGEQAVEQALKDIELMCILKEKAADYDVEITEDDEKAI 123

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
               A     + ED    L         + +    +S   D +  D      + E +  +
Sbjct: 124 ADAAAAFMSANTEDTLKTLAVTEDQVKTYLELETYKSRMHDPIIADVDKNVSDEEAQQSS 183

Query: 166 NKQK--------MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
                          I  ++   + +L  +  +   +   + K + D+            
Sbjct: 184 FNYVSISTSDLSDDEIKQKKEDAQKILDGLNADPDGDFSEIAKSVDDSYTVLSGSFDTNE 243

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP--YVTQKGVEYIAICDK 275
              +  S   D +          +   +   +L+  ++    P    T      + +   
Sbjct: 244 DAAEEDSDDEDET-----TASSGNYPDEVMKVLRTLKDGEVGPDVIETDSSYYVVRLDKV 298

Query: 276 RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            D       K  + +        +   +++ +    A I 
Sbjct: 299 NDEDATATKKESIISTRENELYTETTDKWMDE----ADIK 334


>gi|258576633|ref|XP_002542498.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4
           [Uncinocarpus reesii 1704]
 gi|237902764|gb|EEP77165.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4
           [Uncinocarpus reesii 1704]
          Length = 124

 Score = 50.4 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 29/85 (34%), Gaps = 6/85 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               + ++A        K      +++        G   + +   L+ +F+ +  + + +
Sbjct: 41  EKHSKKEEALGKLRDGAKFDEVAREYSED-KARQGGSLGWKVRGSLNGEFEKVAYELEPS 99

Query: 257 TTN-P----YVTQKGVEYIAICDKR 276
           TT  P      T  G   I +  ++
Sbjct: 100 TTANPKYAEVKTGFGYHIIMVEGRK 124


>gi|225375823|ref|ZP_03753044.1| hypothetical protein ROSEINA2194_01455 [Roseburia inulinivorans DSM
           16841]
 gi|225212258|gb|EEG94612.1| hypothetical protein ROSEINA2194_01455 [Roseburia inulinivorans DSM
           16841]
          Length = 367

 Score = 50.4 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/313 (7%), Positives = 72/313 (23%), Gaps = 22/313 (7%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
            T  ++       ++        +    T++G+ I  G ++   A L+  + +       
Sbjct: 6   FTTLLVSSVLAASMLVGCGGINKNETVATLDGQEIKLG-VANFAARLQQAEADDFYRAYF 64

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS------AEDFSSFLDKQGIG 130
             ++    L          T +S       +   +N           ++ +   +     
Sbjct: 65  GDDVWSSDLYNNGTTMEDNTKNSVIEMIENLYILQNHMADYDVTLTDDETAKIAETAAQF 124

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME----IPANKQKMKNITVREYLIRTVLFS 186
                          + +  +++             I      + +          V  S
Sbjct: 125 MADNDDKAVNALGATEDIVKEYLTLVTVQSKMRAAIIADADTNVSDADANTSAYSYVNVS 184

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKA---QYLLES--D 241
               K  +    +    +  E    + K  +              G              
Sbjct: 185 KTSYKDADGNTQEYTDDEKAELADTVQKFHDAAADTTLDTAADEYGYTVSTGTFSSDNTT 244

Query: 242 LHPQF--QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
           L  +        KS+   ++   T      + + +  D       +  +       +   
Sbjct: 245 LDEEVLNALEGLKSEGELSDVVETDNYYYVLRLDEITDADATEEHRQEI----ISQRQSD 300

Query: 300 HEAEYVKKLRSNA 312
              E ++  +  A
Sbjct: 301 LYNEVLQGWKDEA 313


>gi|331006788|ref|ZP_08330054.1| peptidyl-prolyl cis-trans isomerase C [gamma proteobacterium
           IMCC1989]
 gi|330419406|gb|EGG93806.1| peptidyl-prolyl cis-trans isomerase C [gamma proteobacterium
           IMCC1989]
          Length = 91

 Score = 50.4 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 8/77 (10%), Positives = 24/77 (31%), Gaps = 1/77 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-N 255
             ++  +  ++   +        +K ++       G    + +  L    + ++ K    
Sbjct: 11  KNKEAAEKLKQRLSKGEAFDVLAKKHSTCNSAKKGGDLGEIRKGQLVKSVEQVIFKKPLK 70

Query: 256 NTTNPYVTQKGVEYIAI 272
               P  +Q G   I +
Sbjct: 71  QVHGPVKSQFGFHLIEV 87


>gi|17647355|ref|NP_523428.1| dodo [Drosophila melanogaster]
 gi|12644017|sp|P54353|DOD_DROME RecName: Full=Protein dodo
 gi|1147599|gb|AAC46958.1| dodo [Drosophila melanogaster]
 gi|7295516|gb|AAF50829.1| dodo [Drosophila melanogaster]
 gi|255760114|gb|ACU32641.1| SD16185p [Drosophila melanogaster]
          Length = 166

 Score = 50.4 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 7/106 (6%), Positives = 24/106 (22%), Gaps = 1/106 (0%)

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
               +  +   +   R   +   +     +           +   +          ++  
Sbjct: 57  EVHCLHLLVKHKGSRRPSSWREANITRTKEEAQLLLEVYRNKIVQQEATFDELARSYSDC 116

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                 G         +   F++   K + N  +    +  G+  I
Sbjct: 117 SSAKRGGDLGKFGRGQMQAAFEDAAFKLNVNQLSGIVDSDSGLHII 162


>gi|119713671|gb|ABL97722.1| hypothetical protein MBMO_EB0-39H12.0098 [uncultured marine
           bacterium EB0_39H12]
          Length = 269

 Score = 50.4 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 62/238 (26%), Gaps = 11/238 (4%)

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I E+     I                    R      E+       +   D +       
Sbjct: 32  IFESEINSLIGTWVTQVGREPTLQEIDGIIRQL--LDEEILYREAMKLGLDKNDIIIKRR 89

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
            +     ++ +      + E       + +    V + L  + ++   ++  +       
Sbjct: 90  LAQKIGFLRQEADSSLPSEEQVSDFYSKNIDKYFVAKRLTFSHVYFSTNDNGKTLAEEAL 149

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP 260
            +  +  S     +     + F+SK           +  S      +N+        + P
Sbjct: 150 ILIKSGASESDFGEPFLLGKNFSSKS-------ISEIERSFGKQFSENIQNIIPKEWSGP 202

Query: 261 YVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
             ++ G   I +    D        +K  +       K      EY+K+LR+   I  
Sbjct: 203 LDSEYGSHLIYVNSISDSFTPSLEEIKDIVINDVILEKQNNSVNEYLKELRNKYQIEI 260


>gi|156306337|ref|XP_001617585.1| hypothetical protein NEMVEDRAFT_v1g225960 [Nematostella vectensis]
 gi|156194689|gb|EDO25485.1| predicted protein [Nematostella vectensis]
          Length = 367

 Score = 50.4 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/120 (9%), Positives = 28/120 (23%), Gaps = 11/120 (9%)

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK 252
                        +++             +       + G+   +    + P F + +  
Sbjct: 144 KDEAKALANSLLAQAKSNPEGFSALAMANSDDPGSKNNGGEYDNITPGQMVPTFNDFVFN 203

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
           +   +     T  G   I +  K            +       K+E      + +L   A
Sbjct: 204 NPVGSIGVVETDYGFHVIKVSGK---------YDAIRLATIAKKVEP-SNATIDELYRKA 253


>gi|254411803|ref|ZP_05025579.1| PPIC-type PPIASE domain protein [Microcoleus chthonoplastes PCC
           7420]
 gi|196181525|gb|EDX76513.1| PPIC-type PPIASE domain protein [Microcoleus chthonoplastes PCC
           7420]
          Length = 205

 Score = 50.4 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/107 (12%), Positives = 34/107 (31%), Gaps = 3/107 (2%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNL-LKKSQ 254
              +  +  +  R++    C     ++       + G       ++L P+       +S+
Sbjct: 94  ERVEAERIIQLIRVQPASFCALALDYSQGKQSKENGGFLGIHFLAELQPEIAQAVTNRSE 153

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE 301
               +P  TQ G   + + +K        ++  +      T +E   
Sbjct: 154 GEVIDPIQTQLGYHILKL-EKWLPIEFREVREQILEYLFQTWLENKS 199


>gi|302675721|ref|XP_003027544.1| hypothetical protein SCHCODRAFT_86066 [Schizophyllum commune H4-8]
 gi|300101231|gb|EFI92641.1| hypothetical protein SCHCODRAFT_86066 [Schizophyllum commune H4-8]
          Length = 137

 Score = 50.4 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/86 (10%), Positives = 25/86 (29%), Gaps = 7/86 (8%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               +  +A +            ++++      + G   +++   +   FQ        +
Sbjct: 53  EKHSKATEALQKIQEGVAFNKVAQEYSED-KAKAGGSLGWMVRGSMVGPFQEAAFALTPS 111

Query: 257 T------TNPYVTQKGVEYIAICDKR 276
           T      +    T  G   I +  +R
Sbjct: 112 TVDKPITSGLVKTNFGYHIIMVEGRR 137


>gi|254495144|ref|ZP_05108068.1| peptidylprolyl isomerase [Polaribacter sp. MED152]
 gi|85819494|gb|EAQ40651.1| peptidylprolyl isomerase [Polaribacter sp. MED152]
          Length = 695

 Score = 50.4 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 39/115 (33%), Gaps = 1/115 (0%)

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQFQNLLKK 252
            +   Q         + R  K  +  ++F+S     V  G+  +   + + P F++   +
Sbjct: 359 EEEAKQLADSLLAVVKRRKSKFADLAKEFSSDQASAVKGGEYDWYNYNRMTPAFRDFTFE 418

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
            +    +   T  G   I I D+++    I +  +        + E       ++
Sbjct: 419 GKKGDMDVVKTPFGFHVIKIDDQKNKQKVIKMATFSKDIVPSEETENAVFRQAEE 473



 Score = 39.7 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 19/169 (11%), Positives = 48/169 (28%), Gaps = 1/169 (0%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
            SK+       I ++       +     +  + + +  +     ++GE I+  + +  + 
Sbjct: 4   LSKIRERSMFLIIIIGLALFAFVLDPSTLGDFFNSSKVNE-VGEVDGEAISRQEFANELE 62

Query: 62  LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
             K Q      E  A + +    ++K+  +                    N      +  
Sbjct: 63  SYKQQTGGRASEMQAAKTVWDNIVRKKIYKNQLNEAGITIGEADVWNEVVNAPFVQNNPQ 122

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
              +     +N FKQ+LA      + +   +      +      N    
Sbjct: 123 YQNEVGLFDENKFKQFLADTKENNEQLWAQWSSYMNQVRDNAETNTFNN 171


>gi|325266271|ref|ZP_08132950.1| peptidyl-prolyl cis-trans isomerase [Kingella denitrificans ATCC
           33394]
 gi|324982233|gb|EGC17866.1| peptidyl-prolyl cis-trans isomerase [Kingella denitrificans ATCC
           33394]
          Length = 292

 Score = 50.4 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/292 (7%), Positives = 64/292 (21%), Gaps = 11/292 (3%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVET 84
                     S  + ++   T+NG  I   ++  R   ++ Q      +   +++ I   
Sbjct: 6   MAAALAGVLLSAQLMAQTVVTVNGTKIDSDELDARAKFVQQQSQGQVKDSPELRQFIANE 65

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
           +  + +                  +      +          +        +    Q + 
Sbjct: 66  VVVETVVVQEAR---RLKLDQSADYKTAEADARRQARDRGLDKQPDFQANWKRFLNQVLM 122

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
               ++         E                + +    + +    + Q         K 
Sbjct: 123 DVYAQHIVQQNPVTDEQLQERYNAIKTRYDNTDEVQIGEIITDKAEQAQAAIRELAAKKS 182

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT--NPYV 262
             +   +   D       ++    +++       +      F  +        T      
Sbjct: 183 FADVARKYSIDPEVKAGQSAISDFMALVDL----KEARPKIFAAVQNLKAGEFTRQALNE 238

Query: 263 TQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             K      +  +R +  E      +         ++     V  L   A I
Sbjct: 239 DNKAFVVFYMSTRRKIAVE--PFEKVREGLLNNMRQERVQAAVGALMQKANI 288


>gi|121698307|ref|XP_001267778.1| peptidyl-prolyl cis/trans isomerase [Aspergillus clavatus NRRL 1]
 gi|119395920|gb|EAW06352.1| peptidyl-prolyl cis/trans isomerase [Aspergillus clavatus NRRL 1]
          Length = 188

 Score = 50.4 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 7/109 (6%), Positives = 25/109 (22%), Gaps = 1/109 (0%)

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
               +    +       R   +   +     +  ++      +  +       +     +
Sbjct: 77  DGKIRCSHLLVKHRDSRRPSSWREAEITRSKEEAIEILRGHEQRIQSGEVSLGDIAVSES 136

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                   G   +    ++  +F++          +    T  GV  I 
Sbjct: 137 DCSSARKKGDLGFFGRGEMQKEFEDAAFALQPGQVSGIVETASGVHLIE 185


>gi|320038240|gb|EFW20176.1| conserved hypothetical protein [Coccidioides posadasii str.
           Silveira]
          Length = 124

 Score = 50.4 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 25/85 (29%), Gaps = 6/85 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               + ++A        K      +F+        G   + +   L   F+      + +
Sbjct: 41  EKHSKKEEALAKLRAGAKFDEVAREFSED-KARQGGSLGWKIRGSLDAAFEKAAYDLEPS 99

Query: 257 TTN-P----YVTQKGVEYIAICDKR 276
           TT  P      T  G   I +  ++
Sbjct: 100 TTASPKYAEVKTGFGYHIIMVEGRK 124


>gi|326204847|ref|ZP_08194701.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           papyrosolvens DSM 2782]
 gi|325985059|gb|EGD45901.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           papyrosolvens DSM 2782]
          Length = 348

 Score = 50.4 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/331 (8%), Positives = 91/331 (27%), Gaps = 40/331 (12%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRI--------RTTINGEVITDGDISKRIA---- 61
           +   +  V +   +  ++   +   ++             +  + I+  D +  +     
Sbjct: 3   RKFVSALVAVALVLTAMIPAGNTFAAATTKTATPETYVAKVGTDNISKEDYNIFLKDAIS 62

Query: 62  ---------------LLKLQKINGELEKIAVQELIVETLKK---QEIEKSGITFDSNTVN 103
                           +   K +   +K+A+  ++   ++    +  + +    +++  N
Sbjct: 63  MIQSYFNSYNVDWNANINNMKASDYAKKLALDNVVDFKIQLSKAKAAKTALTKKETDDFN 122

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
                +  +   +  +    +  +        +             +     Y   + E+
Sbjct: 123 TNMNSYLNSLAATTAEQEKIIKNETGFTLSQFKSFYNNVSIVRKFSSQTQSSYKTTDTEL 182

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
                  K+   +  +   +  S  +N         +  K AE++  ++ +         
Sbjct: 183 KKFYDSNKDKFYKVIVGHILFLSNDENNQSTPQKDAEAKKKAEDTLKKVNEPNCDFAALV 242

Query: 224 SKIHDV-----SIGKAQYLLESDLHPQFQNLLKKSQNNT--TNPYVTQKGVEYIAICDKR 276
            ++ +        GK   +      P+F+N    S      T    T  G   + +    
Sbjct: 243 KELSEDPGSVEKGGKYTVMKNHQYVPEFENWAVDSSRKVGDTGIVKTSYGYHVMKLM--- 299

Query: 277 DLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
            +     LK  + +     + +     + K 
Sbjct: 300 KVYSFTQLKDDIKSGYISKRYDDDLNAWRKD 330


>gi|296812781|ref|XP_002846728.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Arthroderma otae CBS
           113480]
 gi|238841984|gb|EEQ31646.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Arthroderma otae CBS
           113480]
          Length = 218

 Score = 50.4 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 7/110 (6%), Positives = 23/110 (20%), Gaps = 1/110 (0%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                +    +       R   +   +        ++      +          +     
Sbjct: 58  AEGKIRASHLLIKHRESRRPSSWRESEITRSKSEAIEILRGHQKRIEAGEASLGDIATSE 117

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
           +        G   +    ++  +F+           ++   T  GV  I 
Sbjct: 118 SDCSSARKRGDLGFFGRGEMQAEFEQAAFALKVGQVSDIVETASGVHLIE 167


>gi|195952796|ref|YP_002121086.1| SurA domain [Hydrogenobaculum sp. Y04AAS1]
 gi|195932408|gb|ACG57108.1| SurA domain [Hydrogenobaculum sp. Y04AAS1]
          Length = 316

 Score = 50.4 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 89/284 (31%), Gaps = 25/284 (8%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKS 93
               + +R+  +INGE I + D+   +     +       K+A++ LI   L  Q + ++
Sbjct: 56  TPGVLVNRVVASINGEPILESDLKIAMVYFGTKDA-----KLALKRLIDIYLIYQYLSEN 110

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
            +    + ++      A    L+ E     L KQGI    F+ +L  + +          
Sbjct: 111 HMATPESFLDQTIKDLASQNNLTVEQLYEELKKQGISPKEFRDFLRKEILATAGFGEYLR 170

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                   +I   K K     +   +   ++     +KL              +      
Sbjct: 171 KAVKITPSDIELLKLKYGKPKIERDIELLIVPKKDKDKL-------------SKLLNGTT 217

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAIC 273
                  K      ++       + + DL       + K+          +  +    + 
Sbjct: 218 SLKTIASKLNLTPQELE------VAKGDLKKNLDEQVWKASKGDIVFAEGKNNIYIAKVK 271

Query: 274 DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           + + +   I L      +    K++K   E + KL+  + I  +
Sbjct: 272 NIKLVYQNIDLDKL-KKKLLEEKMKKKYDEILHKLKKESYIKVF 314


>gi|311032420|ref|ZP_07710510.1| molecular chaperone lipoprotein [Bacillus sp. m3-13]
          Length = 97

 Score = 50.4 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 2/77 (2%)

Query: 241 DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH 300
            L    +       N  + P  +  G   I + DK+D      +KA L  +   +K+ + 
Sbjct: 1   MLPEFEEAAYSLEVNEISEPVESMYGFHIIKVTDKKDKEPFEDMKAELKEEVLLSKVNEE 60

Query: 301 E--AEYVKKLRSNAIIH 315
                 V+K   NA I 
Sbjct: 61  ASVDTAVQKELDNANIK 77


>gi|227543912|ref|ZP_03973961.1| peptidylprolyl isomerase [Lactobacillus reuteri CF48-3A]
 gi|300909659|ref|ZP_07127120.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus reuteri SD2112]
 gi|227186113|gb|EEI66184.1| peptidylprolyl isomerase [Lactobacillus reuteri CF48-3A]
 gi|300893524|gb|EFK86883.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus reuteri SD2112]
          Length = 312

 Score = 50.4 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/284 (10%), Positives = 77/284 (27%), Gaps = 33/284 (11%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELI 81
           LI       +     A  ++   T +G  IT+ +    +             K  +Q++I
Sbjct: 6   LIAIIAGAALMMPLAACGNKAVATTSGGKITESEYYSSMKQTSA-------GKQVLQQMI 58

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
           ++ + +++  K                         +  + +   +    + F  YL  Q
Sbjct: 59  LDKVLEKQYGKEV--------------------SDKQVNAQYNTYKNEYGSDFNAYLQSQ 98

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
           ++    +K                          +++             + ++   +  
Sbjct: 99  NLTEKSLKQQIRSNLLLTAA-ARHYSHITNKQINKQWTKYQPKVQTATILVGSKSDAEDI 157

Query: 202 IKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYL--LESDLHPQFQNLLKKSQNN-- 256
           I    +S  +        +  +       + GK       ++ L   ++    K +    
Sbjct: 158 INQLNDSSNKYKTFKKLAKSKSTDSQTKNNGGKLPAFDNTDNQLDSAYKKAAFKLKTGEY 217

Query: 257 TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH 300
           TT P  T  G + I + +    G +      L  Q     +   
Sbjct: 218 TTTPVKTDDGYQVIYMIEHPAKGKKSQHINDLKNQIVQENMNNQ 261


>gi|23010100|ref|ZP_00050908.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 287

 Score = 50.4 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 48/166 (28%), Gaps = 18/166 (10%)

Query: 1   MTSKVFTSLSDFI-KLLTTYFVLIIFCIVPIVSYKSW--AMSSRIRTTINGEVITDGDIS 57
           M   +  +   ++ K++ T     +   V I   + +    SS    T+    I+  ++ 
Sbjct: 1   MLQSIRNASQHWLGKVVLTVIFTFLIAGVAIFGVEEFFRGGSSSTVATVGKTPISAEEVR 60

Query: 58  KRIALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
                   +                  LE+  + +LI E    Q+    G+      V  
Sbjct: 61  TAYQNQLQRYQAQLKRTLTPDQARSLGLERQVLSQLITEAALDQKTTDLGLAVSDAAVLR 120

Query: 105 FFV--QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
                   +N   + +    +   Q  G N        +S+   + 
Sbjct: 121 AIQDEPSFKNANGTFDRVLFYQTLQRAGLNEAMFVREQRSVIARLQ 166


>gi|51849615|dbj|BAD42337.1| trypsin [Nannochloris bacillaris]
          Length = 299

 Score = 50.4 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 9/135 (6%), Positives = 35/135 (25%), Gaps = 6/135 (4%)

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
            +   +          +       +     +       +R     +P          +  
Sbjct: 50  ILKQHLPMKRSFTSTISASSSSSPSPTSGISSDDPNRQVRVSHILLPPGSESTIEDFKS- 108

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPY 261
                +            ++ ++       G   ++ +     +F+     +  ++ +  
Sbjct: 109 -----QILNGTATLETLAKEHSTCPSASRGGDIGWIQKGRTVREFEIAAYSTPKDSFSTC 163

Query: 262 VTQKGVEYIAICDKR 276
            T+ GV  I + ++R
Sbjct: 164 TTKFGVHLIQVKEER 178


>gi|121702709|ref|XP_001269619.1| peptidyl-prolyl cis-trans isomerase [Aspergillus clavatus NRRL 1]
 gi|119397762|gb|EAW08193.1| peptidyl-prolyl cis-trans isomerase [Aspergillus clavatus NRRL 1]
          Length = 126

 Score = 50.4 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 27/85 (31%), Gaps = 6/85 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               + ++A E      K      +F+        G   + +   L+  F+      + +
Sbjct: 43  EKFSKKEEALEKLRNGAKFDEVAREFSED-KARQGGSLGWKVRGSLNGDFEKAAYDLEPS 101

Query: 257 TTN-P----YVTQKGVEYIAICDKR 276
           TT  P      T  G   I +  ++
Sbjct: 102 TTASPKYVEVKTGFGYHIIMVEGRK 126


>gi|157124569|ref|XP_001654110.1| rotamase [Aedes aegypti]
 gi|108873956|gb|EAT38181.1| rotamase [Aedes aegypti]
          Length = 159

 Score = 50.4 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 8/113 (7%), Positives = 26/113 (23%), Gaps = 1/113 (0%)

Query: 159 LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
              +  A  Q    +   +   R   +   +        +       ++ +         
Sbjct: 43  SPEQDTAEVQCAHLLVKHKGSRRPSSWREDNITRSKSEALGILEGYRKQIQSGEVTLPEL 102

Query: 219 LEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            ++++        G         +   F+           ++   T  G+  I
Sbjct: 103 AQQYSDCSSAKRGGDLGMFKRGMMQKPFEEAAFALKVGEMSDIVDTDSGLHLI 155


>gi|149370006|ref|ZP_01889857.1| peptidyl-prolyl cis-trans isomerase [unidentified eubacterium
           SCB49]
 gi|149356497|gb|EDM45053.1| peptidyl-prolyl cis-trans isomerase [unidentified eubacterium
           SCB49]
          Length = 701

 Score = 50.4 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/351 (9%), Positives = 84/351 (23%), Gaps = 61/351 (17%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           + SK+       I ++       +   V      S   +     TIN   ++  D   ++
Sbjct: 3   ILSKIRQKTVFLIVIIAMALFAFVLADVLKNGGGSSNKAQTRVATINDTELSQADFMAQV 62

Query: 61  ALLKLQKINGELE----KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
              + Q            +     +   L ++E EK GI  + + ++    +      L 
Sbjct: 63  QSTQQQMGPTATTASAVNVVWDREVKRVLLQEEFEKLGIRIEKDQLDAALAEGLAGNQLF 122

Query: 117 AEDFSSFLDKQGIGDN----------HFKQYLAIQSIWPDVVKNDFMLKYGN------LE 160
             +   F   +               + +       +   V++ ++M            E
Sbjct: 123 TNELGLFDRNRMNEYISDMKLNNPAAYQQWLTYENGVIQSVLELNYMNMIKGGLKSTLAE 182

Query: 161 MEIPANKQKMKNITVREYLIRTVLF------------SIPDNKLQNQGFVQKRIKDAEES 208
            E        K      ++  T +             S  ++   +     +   +  + 
Sbjct: 183 GEQQYRYDNDKINFQYVHVPYTSINDTEVAVSEDEIKSYVNDHAADFEVEAQTDIEYVKF 242

Query: 209 RLRLPKDCNKLEKFASKIHDVSIGKAQ----------------------------YLLES 240
                 +    ++ + K    +                                 Y  + 
Sbjct: 243 DEIASDEDIAAQEASLKEFLTAGKDNGADRVAFKDAENPEVYVNDYSDFTYVDRWYFSKD 302

Query: 241 DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ 291
              P               PY          + +KR L  +    +++  +
Sbjct: 303 IPAPLTAADSDLEVGEVVGPYKNVTNFNLTRVLEKRQL-ADSVQTSHIQVK 352



 Score = 42.7 bits (98), Expect = 0.067,   Method: Composition-based stats.
 Identities = 7/89 (7%), Positives = 25/89 (28%), Gaps = 2/89 (2%)

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLES-DLHPQFQNLLK 251
            +   ++        +                + +  + G+  YL  +  L       + 
Sbjct: 367 KEEAKKRADSIFNVVKRSPSTFAEVASATTDDVRNKANGGELGYLNPNVQLPETISEFVL 426

Query: 252 KSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           ++         T+ G   + + D +++  
Sbjct: 427 QADKGDMKLVETEFGYHVLHVTDVKNIQP 455


>gi|118576368|ref|YP_876111.1| parvulin-like peptidyl-prolyl isomerase [Cenarchaeum symbiosum A]
 gi|3599386|gb|AAC62692.1| peptidyl-prolyl cis/trans isomerase [Cenarchaeum symbiosum]
 gi|118194889|gb|ABK77807.1| parvulin-like peptidyl-prolyl isomerase [Cenarchaeum symbiosum A]
          Length = 92

 Score = 50.4 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 8/68 (11%), Positives = 19/68 (27%), Gaps = 2/68 (2%)

Query: 206 EESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVT 263
           +E      K     ++ +         G   Y     +   F++   +      + P  +
Sbjct: 22  QERLKAGEKFGKLAKELSIDGGSAKRDGSLGYFGRGKMVKPFEDAAFRLQVGEVSEPVKS 81

Query: 264 QKGVEYIA 271
           + G   I 
Sbjct: 82  EFGYHVIK 89


>gi|42521883|ref|NP_967263.1| peptidyl-prolyl cis-trans isomerase C [Bdellovibrio bacteriovorus
           HD100]
 gi|39574413|emb|CAE77917.1| peptidyl-prolyl cis-trans isomerase C [Bdellovibrio bacteriovorus
           HD100]
          Length = 90

 Score = 50.4 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 18/66 (27%), Gaps = 2/66 (3%)

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN--PYVTQK 265
           +           ++++        G      E  +   F+      + N T   P  T+ 
Sbjct: 22  ALKSGKTFEELAQRYSQCPSARVGGDLGVFAEGRMDEVFEEAAFALKVNETTLHPVRTRF 81

Query: 266 GVEYIA 271
           G   I 
Sbjct: 82  GYHIIR 87


>gi|331246221|ref|XP_003335744.1| hypothetical protein PGTG_16979 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309314734|gb|EFP91325.1| hypothetical protein PGTG_16979 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 124

 Score = 50.1 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 8/80 (10%)

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN------T 257
           +A               + +      + G   ++    +   FQ    + Q +       
Sbjct: 46  EAIARLKSGVSFDKVASELSED-KARNGGSLGWMTRGSMVGPFQEAAFQLQTSSVGSPIF 104

Query: 258 TNP-YVTQKGVEYIAICDKR 276
           T+P   T  G   I + +++
Sbjct: 105 TDPAIKTNFGYHVIMVEERK 124


>gi|68160702|gb|AAY86797.1| lr0370 [Lactobacillus reuteri]
          Length = 312

 Score = 50.1 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/284 (10%), Positives = 76/284 (26%), Gaps = 33/284 (11%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELI 81
           LI       +     A  ++   T +G  IT+ +    +             K  +Q++I
Sbjct: 6   LIAIIAGAALMMPLAACGNKAVATTSGGKITESEYYSSMKQTSA-------GKQVLQQMI 58

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
           ++ + +++  K                         +  + +   +      F  YL  Q
Sbjct: 59  LDKVLEKQYGKEV--------------------SDKQVNAQYNTYKNEYGADFNAYLQSQ 98

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
           ++    +K                          +++             + ++   +  
Sbjct: 99  NLTEKSLKQQIRSNLLLTAA-ARHYSHITNKQINKQWTKYQPKVQTATILVGSKSDAEDI 157

Query: 202 IKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYL--LESDLHPQFQNLLKKSQNN-- 256
           I    +S  +        +  +       + GK       ++ L   ++    K +    
Sbjct: 158 INQLNDSSNKYKTFKKLAKSKSTDSQTKNNGGKLPAFDNTDNQLDSAYKKAAFKLKTGEY 217

Query: 257 TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH 300
           TT P  T  G + I + +    G +      L  Q     +   
Sbjct: 218 TTTPVKTDDGYQVIYMIEHPAKGKKSQHINDLKNQIVQENMNNQ 261


>gi|303242616|ref|ZP_07329091.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio
           cellulolyticus CD2]
 gi|302589824|gb|EFL59597.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio
           cellulolyticus CD2]
          Length = 471

 Score = 50.1 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 81/287 (28%), Gaps = 17/287 (5%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLK----------KQEIEK 92
              + GE +         + + L+         A QE I + +              I K
Sbjct: 56  VLKVGGEFVDKKLFQDEKSQIYLKVDKQADLMQASQEEIDDRILSAVIDDAVVNNFLINK 115

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
           SG       ++ +   + ++   + EDF  FL           + +A   +    V  D 
Sbjct: 116 SGKQVTEAEIDEYIKVYIKSKYDNDEDFKVFLTTSDYESEDELRDVAKLFLLKLKVMPDI 175

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
             +YG    +   N++               ++    N+ ++         +  +     
Sbjct: 176 AAEYGITVTDKELNEEYESFKAANTEYTFRHIYIS--NEKKSDQEALNLANNIYKQLSEG 233

Query: 213 PKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                  +K++       + G  +Y+  S ++ + +             P   + G    
Sbjct: 234 ADFKELAKKYSDDQDTKNNGGLNEYVPFSSINEELKAAYSNAKVGELIAPVKMKSGYNIA 293

Query: 271 AICDKRDLGGEIALKAYLSAQNTPTKIE-KHEAEYVKKLRSNAIIHY 316
            I        +I               E     E+++K++S   I  
Sbjct: 294 LIEHIGKFYPDIESYK--KNMLLSKFNESDKYKEWLEKIKSQETIEI 338


>gi|164425050|ref|XP_957324.2| hypothetical protein NCU06433 [Neurospora crassa OR74A]
 gi|157070769|gb|EAA28088.2| predicted protein [Neurospora crassa OR74A]
          Length = 131

 Score = 50.1 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/79 (13%), Positives = 28/79 (35%), Gaps = 6/79 (7%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN 259
           + ++A               +++      + G   +  +  L P+F+ +      ++T++
Sbjct: 51  KKEEALAKIRDGADFGAVAREYSED-KARTGGSLGWKQKGTLDPEFEKVAFALETSSTSS 109

Query: 260 P----YVTQKGVEYIAICD 274
           P      TQ G   I +  
Sbjct: 110 PKIGEVKTQFGYHIIMVEG 128


>gi|154491017|ref|ZP_02030958.1| hypothetical protein PARMER_00934 [Parabacteroides merdae ATCC
           43184]
 gi|154088765|gb|EDN87809.1| hypothetical protein PARMER_00934 [Parabacteroides merdae ATCC
           43184]
          Length = 712

 Score = 50.1 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 59/241 (24%), Gaps = 16/241 (6%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           ++  DI K               K   ++   + +K   ++      D +  +       
Sbjct: 239 VSKSDIEKLYNQ----------RKELFKQKEGKVIKYIAVDIRPSKEDYDKASAEIESLK 288

Query: 111 RNTGLSAEDFSSFLDKQGIGDNH-FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
                S +      +   I     F    A+       VK   +        E    +  
Sbjct: 289 SELATSEKVADLVTENSEIPYMDAFFTENALDPEMKQFVKTANVGDVYGPVFENDKYRLF 348

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
                        V   +  N         K          +        +++++     
Sbjct: 349 KLVDKTVAPDSVKVSHIMLANTGDEAAIKAKADSL-LNVLKKGGDFVALAKEYSADQAAE 407

Query: 230 SIGKAQYLLESD----LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK 285
             G+  +  E+     ++  F+  +  +  N  +   +  G   I + DK     +  + 
Sbjct: 408 KGGELGWFTEATALRGVNDDFKKAVFSTPVNDYSIVKSLYGTHIIKVTDKTTNVDKYKVA 467

Query: 286 A 286
            
Sbjct: 468 D 468


>gi|326436433|gb|EGD82003.1| peptidylprolyl cis/trans isomerase [Salpingoeca sp. ATCC 50818]
          Length = 168

 Score = 50.1 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/147 (10%), Positives = 36/147 (24%), Gaps = 7/147 (4%)

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV------LF 185
                    +      VK  F +K      E P  +Q+ K +T    L +         +
Sbjct: 19  PTLPPNWVERMSRSRGVKYYFNVKTKESRWERPEPEQEKKTVTASHILCKHRDSRRPSSW 78

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ 245
              +     +  +    K  ++         +     +        G         +   
Sbjct: 79  REQNITRTKEEAIDIIKKHRQDIVDGKVTFEDVARTESDCSSAKRGGDLGPFTHDKMQKP 138

Query: 246 FQNLLKK-SQNNTTNPYVTQKGVEYIA 271
           F +          ++  ++  GV  I 
Sbjct: 139 FADAAFALEVGELSDVVISDSGVHIIK 165


>gi|317033797|ref|XP_001395465.2| peptidyl-prolyl cis-trans isomerase ssp-1 [Aspergillus niger CBS
           513.88]
          Length = 189

 Score = 50.1 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 7/109 (6%), Positives = 24/109 (22%), Gaps = 1/109 (0%)

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
               +    +       R   +   +     +  ++                 +     +
Sbjct: 78  EGKIRCSHLLVKHRESRRPSSWREAEITRSKEEAIEILRGHEARINAGEASLGDIAVSES 137

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                   G   +   +++  +F++          +    T  GV  I 
Sbjct: 138 DCSSARKRGDLGFFGRNEMQKEFEDAAFALQPGQVSGIVETASGVHLIE 186


>gi|134080181|emb|CAK46161.1| unnamed protein product [Aspergillus niger]
          Length = 177

 Score = 50.1 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 7/109 (6%), Positives = 24/109 (22%), Gaps = 1/109 (0%)

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
               +    +       R   +   +     +  ++                 +     +
Sbjct: 66  EGKIRCSHLLVKHRESRRPSSWREAEITRSKEEAIEILRGHEARINAGEASLGDIAVSES 125

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                   G   +   +++  +F++          +    T  GV  I 
Sbjct: 126 DCSSARKRGDLGFFGRNEMQKEFEDAAFALQPGQVSGIVETASGVHLIE 174


>gi|325123356|gb|ADY82879.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 97

 Score = 50.1 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 6/78 (7%), Positives = 24/78 (30%), Gaps = 1/78 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN 255
                  +  ++ +          +++++       G+   + +  L P    ++  +  
Sbjct: 12  KDKDLAEQLKKKLQSGAADFAKLAKQYSTCNSAKRGGELGEVKKGQLVPVIDKVVFTAAE 71

Query: 256 NT-TNPYVTQKGVEYIAI 272
                P  +Q G   + +
Sbjct: 72  RVLQGPIKSQFGYHLLEV 89


>gi|310801080|gb|EFQ35973.1| ppic-type ppiase domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 181

 Score = 50.1 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/92 (10%), Positives = 25/92 (27%), Gaps = 1/92 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R   +   D     +  ++      E+ +             +        G   Y  + 
Sbjct: 84  RPSSWREADITRSKEEALEIIKAHEEKIKSGQTTLGELALTESDCSSARKRGDLGYFGKG 143

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
           D+  +F++     +    +    T  G+  I 
Sbjct: 144 DMQKEFEDAAFGLNPGEISTIVETASGLHLIE 175


>gi|195490069|ref|XP_002092987.1| GE21032 [Drosophila yakuba]
 gi|194179088|gb|EDW92699.1| GE21032 [Drosophila yakuba]
          Length = 370

 Score = 50.1 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/151 (11%), Positives = 42/151 (27%), Gaps = 9/151 (5%)

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
            +    +       R   +  P  K   Q  + K ++ +        +  +     +   
Sbjct: 122 FRCSHILVKHVESDRCSSYRQPVVKRTRQEALNKILQASYLVESGESEFASLARTMSDCC 181

Query: 227 HDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK 285
                G    L  +     F+  + + +    ++ + T  G   +    +  +      K
Sbjct: 182 SARHGGDLGPLRLAQTSFSFEENILRLNTPEVSDIFQTNAGYHILW---RTPVDYRKRHK 238

Query: 286 AYLSAQNTPTKIEK-----HEAEYVKKLRSN 311
             L      TK +K      + +Y+  L   
Sbjct: 239 RGLKQLINATKRKKSKTHLVKNKYLSSLLRK 269


>gi|104782217|ref|YP_608715.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas entomophila L48]
 gi|95111204|emb|CAK15924.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase)
           [Pseudomonas entomophila L48]
          Length = 91

 Score = 50.1 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 7/76 (9%), Positives = 19/76 (25%), Gaps = 1/76 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
                 +  ++            +KF++       G    +    L      ++ K    
Sbjct: 11  KTADEAEKLKQRIANGEAFDVLAKKFSTCPSGKRGGDLGEVRPGQLVGAIDQVIFKKPLR 70

Query: 257 TT-NPYVTQKGVEYIA 271
               P  ++ G   + 
Sbjct: 71  VVHGPIKSKFGYHLVQ 86


>gi|315038920|ref|YP_004032488.1| peptidylprolyl isomerase [Lactobacillus amylovorus GRL 1112]
 gi|325957341|ref|YP_004292753.1| peptidylprolyl isomerase [Lactobacillus acidophilus 30SC]
 gi|312277053|gb|ADQ59693.1| peptidylprolyl isomerase [Lactobacillus amylovorus GRL 1112]
 gi|325333906|gb|ADZ07814.1| peptidylprolyl isomerase [Lactobacillus acidophilus 30SC]
          Length = 301

 Score = 50.1 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/313 (7%), Positives = 81/313 (25%), Gaps = 41/313 (13%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +  ++K +     +    +    +  S   S+    +  G  IT       +        
Sbjct: 1   MKSYMKKIAAVVAVAGVALST--AACSNGGSNSTVASYKGGKITQQQYYDEMK------- 51

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             +  K  +  +I+    +Q+  K   +   +     + +   +   +    +       
Sbjct: 52  KSQAGKSTLANMIINRALEQQYGKYVSSKKVDKQYNNYKKQYGSQFSAVLQQNGMTASSF 111

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                       +++  +++    +     +  +              +  ++ +L    
Sbjct: 112 -----------KENLKTNLLSEQALKHIKKISKKQEQQAW---KSYQPKVTVQHIL---- 153

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYL--LESDLHPQ 245
                     +   +   +         +  +K++         GK       ++ L   
Sbjct: 154 -------VAKKSTAQSIIKQLKDGKSFKSLAKKYSLDTATKNKAGKLPAFDSTDNTLDSS 206

Query: 246 FQNLLKK-SQNNT-TNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE-- 301
           F+    K       + P  +Q G   I +      G     K  +  +   +  +     
Sbjct: 207 FKTAAFKLKTGEVTSTPVKSQSGYHVIKMISHPAKGKFADHKKAIDDEIYASMAQDQATM 266

Query: 302 AEYVKKLRSNAII 314
            + +  +   A +
Sbjct: 267 KDVISTVLKRADV 279


>gi|156048410|ref|XP_001590172.1| hypothetical protein SS1G_08936 [Sclerotinia sclerotiorum 1980]
 gi|154693333|gb|EDN93071.1| hypothetical protein SS1G_08936 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 179

 Score = 50.1 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/167 (9%), Positives = 45/167 (26%), Gaps = 4/167 (2%)

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL---EMEIPA 165
               T  S      F + Q I           + +   + +N  + + G+    + E   
Sbjct: 10  WEVRTSKSKNIPYYFNEAQTISSWEPPANTDTEKLKAYMAENYSVSEIGDSANGQDENHG 69

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
             +    +   +   R   +   +     +  +   ++     R       +   + +  
Sbjct: 70  KIRASHLLVKHKGSRRPSSWREAEITRTKEEAMSIILQHEAHIRSGSTSLGDLAVRESDC 129

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                +G   +    D+  +F+           ++   T  G+  I 
Sbjct: 130 SSARKMGDLGFFGRGDMQKEFEEAAFALKPGEVSHVVETASGLHLIE 176


>gi|312131757|ref|YP_003999097.1| ppic-type peptidyl-prolyl cis-trans isomerase [Leadbetterella
           byssophila DSM 17132]
 gi|311908303|gb|ADQ18744.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leadbetterella
           byssophila DSM 17132]
          Length = 709

 Score = 50.1 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/136 (9%), Positives = 36/136 (26%), Gaps = 12/136 (8%)

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ-YLLESDLHPQFQN 248
              + +   +K+  +                +F S       G    +  +  +   F++
Sbjct: 362 MTQEQRDEAKKKALEILAQAKSGMDFAFLARQFGSDGTAQQGGDLGSFKNDGTMVKAFED 421

Query: 249 LLKKSQNNTTNP--YVTQKGVEYIAICDKRD----LGGEIALKAYLSAQNTPTKIEKHEA 302
            +         P    T  G   + + + +         I  + ++  + +    +K   
Sbjct: 422 AIFSFSGTGVLPNLVTTDFGYHIVKVTEPKSNLKYKLATITKELHVGDEGSNLVFQKASE 481

Query: 303 EY-----VKKLRSNAI 313
                  +K L   A 
Sbjct: 482 LMNSAKSIKDLEEAAK 497



 Score = 43.9 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 25/257 (9%), Positives = 67/257 (26%), Gaps = 16/257 (6%)

Query: 4   KVFTSLSDFIKLLTTYFVLIIFC--IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
           K+       + ++    +L I     V          +S     ING  I     +  + 
Sbjct: 6   KIREKSGVAVVVIAIALILFIVGGDFVAGSKGGGLFGNSNAVGEINGTTIDFQQFANLVE 65

Query: 62  LLKLQ-----------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
             ++Q           +   ++ +   ++LI E +  +  E  GIT     +        
Sbjct: 66  GQRMQYEASVGRSANEQEQAQIREQVWEKLIFEHVYSEAFEDLGITVSDEELREMVQGPK 125

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFK---QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
                  + FS          +                 ++ ++F  +  ++        
Sbjct: 126 NIHPFVKQQFSDQNGNFDATTHANFIAAYANNSMPAEQRIMWDNFKRELRDVRKREKYAN 185

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
               +  + +   +   ++  +       +V          ++   +  +   K     +
Sbjct: 186 LLNSSSYITKAEAKAEYYNTTNKASGKYLYVPFYSVADSTVKVSDGEIKSYFSKHKDDFN 245

Query: 228 DVSIGKAQYLLESDLHP 244
                   Y+  S L  
Sbjct: 246 AYDSRSLVYVTFSLLPT 262


>gi|331086144|ref|ZP_08335226.1| hypothetical protein HMPREF0987_01529 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406303|gb|EGG85817.1| hypothetical protein HMPREF0987_01529 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 353

 Score = 50.1 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/308 (7%), Positives = 78/308 (25%), Gaps = 38/308 (12%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI----------------------N 69
           +       S +  TI GE +T G  +      + +                         
Sbjct: 22  AGCGSVKDSDVVVTIGGEKVTVGVANFFARYQQAEYETYYSGVMGEDMWSTEISKGKSYE 81

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
             ++   ++ L    + +  +    +                    +  +    +     
Sbjct: 82  ETVKNQILETLENMYVLEDHMGDYKVEITEEEKKKISEAAKAFDEANGLEEKEAVSGTTE 141

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                   + IQ      +  D   +  + E    + +    ++T  +    T       
Sbjct: 142 NVERMLTLVTIQEKMQKAMVADVDTEVSDEEAAQKSMQYVNLSLTKTKEDGSTEQM---- 197

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
              + +   +K+ +  +++           ++      ++ +    +  E+    +    
Sbjct: 198 -TEEEKAEAKKKAEAFQKAVKEGADFARTAKE-----KELEVKTMTFDEETTTPDEGLMT 251

Query: 250 LKKS--QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
                 +   +    T  G   + +    D     A K  ++      + EK   +  ++
Sbjct: 252 KANKLGEGEVSEVIETDSGYYVLKVTSLLDREATDAEKESIA----EERKEKQYKDLCEE 307

Query: 308 LRSNAIIH 315
            + +  I 
Sbjct: 308 WKKDVKIE 315


>gi|195482278|ref|XP_002101983.1| GE17920 [Drosophila yakuba]
 gi|194189507|gb|EDX03091.1| GE17920 [Drosophila yakuba]
          Length = 169

 Score = 50.1 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/165 (7%), Positives = 34/165 (20%), Gaps = 1/165 (0%)

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
           +  +       E  +S         N + +            K            + P  
Sbjct: 1   MPDSEQLPEGWEKRTSRSTGMSYYLNVYTKESQWDQPTEPAKKTGGAGGASAGSGDAPDE 60

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
            Q +  +   +   R   +   +     +           +   +          ++   
Sbjct: 61  VQCLHLLVKHKGSRRPSSWREANITRTKEEAQLLLEVYRNKIVQQEATFDELARAYSDCS 120

Query: 227 HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                G         +   F++   K +    +       G+  I
Sbjct: 121 SAKRGGDLGRFGRGQMQAAFEDAAFKLNVGQLSGIVDGDSGLHII 165


>gi|332295221|ref|YP_004437144.1| hypothetical protein Thena_0367 [Thermodesulfobium narugense DSM
           14796]
 gi|332178324|gb|AEE14013.1| hypothetical protein Thena_0367 [Thermodesulfobium narugense DSM
           14796]
          Length = 178

 Score = 50.1 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 39/124 (31%), Gaps = 2/124 (1%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ--KINGELEKIAV 77
            VL+ F +V +V  K      ++  T+NG  IT   +      L     K N +L+K  +
Sbjct: 4   IVLLCFVLVFVVMVKPSFADDKVLATVNGTSITQSQVDAIYNNLPPNVDKTNPDLKKEIL 63

Query: 78  QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY 137
             LI   +   E +K G+  D   +                          + D     +
Sbjct: 64  NRLIENLVLLDEAKKEGLENDPKVIEAINNAKNEILINYLLQKHFAGQNFDVTDADVTNF 123

Query: 138 LAIQ 141
               
Sbjct: 124 YNQN 127


>gi|325281113|ref|YP_004253655.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Odoribacter
           splanchnicus DSM 20712]
 gi|324312922|gb|ADY33475.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Odoribacter
           splanchnicus DSM 20712]
          Length = 708

 Score = 50.1 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/255 (9%), Positives = 65/255 (25%), Gaps = 11/255 (4%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           +++G+I +     +      E  KI         +            ++       V+  
Sbjct: 228 VSNGEIKEYYNKHQKSFEQPESRKIV-------YVNFDIEPSGEDFSETEGAVNDLVKEF 280

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
             +    E  +   DK+   +   +  +A  S+   +  N+         +E  A K   
Sbjct: 281 EESADPLEFVNLSSDKKADRNYFKQDEIANDSMAQFLFNNE--KAVFGPYLENNAYKISR 338

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDV 229
                           +   + Q+    +           +        +  +      V
Sbjct: 339 VASVKMLPDSVRARHILIAPQNQDYAQAKNIADSLAGLLRKGADFEELAKTNSVDQNSAV 398

Query: 230 SIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK-RDLGGEIALKAYL 288
           + G   +     +   F +    ++ N     +TQ G   + + D  + +          
Sbjct: 399 NGGDLGWFTSRTMVQPFSDSAFFAKKNDIKVVLTQYGAHVLQVTDMAKPVKKIQIATVEK 458

Query: 289 SAQNTPTKIEKHEAE 303
               +     +   +
Sbjct: 459 EVSPSAKTTNQIYND 473


>gi|27597140|dbj|BAC55134.1| EpsD [Methylobacillus sp. 12S]
          Length = 234

 Score = 50.1 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/267 (7%), Positives = 69/267 (25%), Gaps = 47/267 (17%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK--LQKIN 69
           F+K     FV ++  +      +  + S ++   ++G+ I+   +++ +  +        
Sbjct: 3   FMK--KAVFVAMVVALAACGKSEEKSSSGQVAAIVDGKEISVLQLNQAMKNMPNVTADNA 60

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
             + K  +  L+ + +   +  +  +   +  ++                          
Sbjct: 61  DAVRKQLLDRLVDQQVVLNKALEEKVERSAEVISSI------------------------ 96

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV--REYLIRTVLFSI 187
                 +    + I    + N    +      ++ A       +    + Y ++ +    
Sbjct: 97  ------EAAKREIITRAYLTNMVSSRIKPSPQQVKAYFDGHPELFSARKVYNLQDIALPP 150

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
                     + +R K  +E    L     K    +                  +     
Sbjct: 151 GTAIPDELKALVERSKGLQEVAEWLKSQNVKFGASSYS-----------RPAEQVPTDAL 199

Query: 248 NLLKKSQNNTTNPYVTQKGVEYIAICD 274
            +LK  ++              + +  
Sbjct: 200 AVLKDQKDGAVLIVPMDGNPHIVKLIG 226


>gi|326469572|gb|EGD93581.1| peptidyl-prolyl cis-trans isomerase [Trichophyton tonsurans CBS
           112818]
 gi|326478902|gb|EGE02912.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Trichophyton equinum CBS
           127.97]
          Length = 178

 Score = 50.1 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 7/109 (6%), Positives = 24/109 (22%), Gaps = 1/109 (0%)

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
               +    +       R   +   +        ++      +  +       +     +
Sbjct: 67  EGKIRASHLLIKHRESRRPSSWRESEITRSKDEAIEILRNHKQRIQSGEASLGDIATSES 126

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                   G   +    ++  +F+           ++   T  GV  I 
Sbjct: 127 DCSSARKRGDLGFFGRGEMQAEFEQAAFALKVGEVSDIVETASGVHLIE 175


>gi|323453848|gb|EGB09719.1| hypothetical protein AURANDRAFT_16091 [Aureococcus anophagefferens]
          Length = 116

 Score = 50.1 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 7/63 (11%), Positives = 14/63 (22%), Gaps = 1/63 (1%)

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVE 268
            R        +  +        G   +     + P F+           +    +  GV 
Sbjct: 52  RREDLFKELAKAQSDCGSAKKGGDLGFFRRGKMSPPFEVAAFNLDVGELSKTVASSSGVH 111

Query: 269 YIA 271
            I 
Sbjct: 112 LIY 114


>gi|169632503|ref|YP_001706239.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
           [Acinetobacter baumannii SDF]
 gi|169794825|ref|YP_001712618.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
           [Acinetobacter baumannii AYE]
 gi|184159400|ref|YP_001847739.1| parvulin-like peptidyl-prolyl isomerase [Acinetobacter baumannii
           ACICU]
 gi|213157847|ref|YP_002320645.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii
           AB0057]
 gi|215482372|ref|YP_002324554.1| Peptidyl-prolyl cis-trans isomerase C [Acinetobacter baumannii
           AB307-0294]
 gi|239501754|ref|ZP_04661064.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
           baumannii AB900]
 gi|260557192|ref|ZP_05829408.1| peptidyl-prolyl cis-trans isomerase C [Acinetobacter baumannii ATCC
           19606]
 gi|301345444|ref|ZP_07226185.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
           baumannii AB056]
 gi|301510337|ref|ZP_07235574.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
           baumannii AB058]
 gi|301595025|ref|ZP_07240033.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
           baumannii AB059]
 gi|332852279|ref|ZP_08434084.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii
           6013150]
 gi|332870502|ref|ZP_08439266.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii
           6013113]
 gi|332876240|ref|ZP_08444015.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii
           6014059]
 gi|169147752|emb|CAM85615.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase)
           [Acinetobacter baumannii AYE]
 gi|169151295|emb|CAO99993.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase)
           [Acinetobacter baumannii]
 gi|183210994|gb|ACC58392.1| Parvulin-like peptidyl-prolyl isomerase [Acinetobacter baumannii
           ACICU]
 gi|193078274|gb|ABO13238.2| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
           baumannii ATCC 17978]
 gi|213057007|gb|ACJ41909.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii
           AB0057]
 gi|213985865|gb|ACJ56164.1| Peptidyl-prolyl cis-trans isomerase C [Acinetobacter baumannii
           AB307-0294]
 gi|260409298|gb|EEX02600.1| peptidyl-prolyl cis-trans isomerase C [Acinetobacter baumannii ATCC
           19606]
 gi|322509312|gb|ADX04766.1| ppiC [Acinetobacter baumannii 1656-2]
 gi|323519339|gb|ADX93720.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332729409|gb|EGJ60749.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii
           6013150]
 gi|332732239|gb|EGJ63507.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii
           6013113]
 gi|332735512|gb|EGJ66564.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii
           6014059]
          Length = 96

 Score = 50.1 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 6/68 (8%), Positives = 22/68 (32%), Gaps = 1/68 (1%)

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT-TNPYVTQ 264
           ++            +++++       G+   + +  L P    ++  +       P  +Q
Sbjct: 21  KKKLQSGADFAKLAKQYSTCNSAKRGGELGEVKKGQLVPVIDKVVFTAAERVLQGPIKSQ 80

Query: 265 KGVEYIAI 272
            G   + +
Sbjct: 81  FGYHLLEV 88


>gi|295660186|ref|XP_002790650.1| peptidyl-prolyl cis-trans isomerase ssp1 [Paracoccidioides
           brasiliensis Pb01]
 gi|34979129|gb|AAQ83700.1| peptidyl-prolyl cis/trans isomerase [Paracoccidioides brasiliensis]
 gi|226281525|gb|EEH37091.1| peptidyl-prolyl cis-trans isomerase ssp1 [Paracoccidioides
           brasiliensis Pb01]
          Length = 190

 Score = 50.1 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/110 (8%), Positives = 26/110 (23%), Gaps = 1/110 (0%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                +    +   +   R   +   +     +  ++   +  E  R       +     
Sbjct: 78  ADGKIRASHLLIKHQGSRRPSSWREAEITRSKEEALEILRRHEESIRSGEKTLGDIAMSE 137

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
           +        G   +    ++  +F+           +    T  GV  I 
Sbjct: 138 SDCSSARKRGDLGFFGRGEMQAEFEEAAFALEPGQVSGIVETASGVHLIE 187


>gi|78063929|ref|YP_373837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           383]
 gi|77971814|gb|ABB13193.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           383]
          Length = 236

 Score = 50.1 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/276 (11%), Positives = 72/276 (26%), Gaps = 55/276 (19%)

Query: 52  TDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
              D+   +     Q  + ++ +    +LI   L +Q  EK+                  
Sbjct: 1   MQADVDTLLRA-SGQPDSPQIRQAIKNQLITRVLVQQAAEKANYADKPEVKAAV------ 53

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
                                   Q     +     ++++   +    E       + + 
Sbjct: 54  ------------------------QQAKANAEVQLYLRDNVKPEPVTEEQVKARYDELVA 89

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
            +   EY  R ++   P         ++                     +++      + 
Sbjct: 90  TLGKNEYKPRLIIVQDPVTAATVLSELKA-----------GKSFEGLARQYSMAPSRDTG 138

Query: 232 GKAQYL---------LESDLHPQFQNLLKKSQNN--TTNPYVTQKGVEYIAICDKRD--L 278
           G+  ++           S L       L+K +    T++          + +  KR   +
Sbjct: 139 GELPWVSFHTPVTEGKTSGLPLPIAQALEKLKVGAATSDSIPVDGVRAIVKLDAKRPTQV 198

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            G    K  L  Q     +EK  A+ +  L  +A I
Sbjct: 199 PGFATAKPGLQQQLQAAAVEKASAQMIGNLLKDAKI 234


>gi|324526000|gb|ADY48617.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Ascaris
           suum]
          Length = 148

 Score = 50.1 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 19/67 (28%), Gaps = 1/67 (1%)

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQ 264
           EE+     K     ++F+        G         +   F++          ++   T 
Sbjct: 79  EEATDMKAKFKELAKEFSDCSSAKRGGDLGMFKRRQMQKPFEDAAFALKVGELSDIVETD 138

Query: 265 KGVEYIA 271
            G+  I 
Sbjct: 139 SGLHLIY 145


>gi|325277728|ref|ZP_08143294.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas sp. TJI-51]
 gi|324097138|gb|EGB95418.1| peptidyl-prolyl cis-trans isomerase C [Pseudomonas sp. TJI-51]
          Length = 91

 Score = 50.1 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 6/76 (7%), Positives = 19/76 (25%), Gaps = 1/76 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
                 +  ++            +KF++       G    +    +      ++ K    
Sbjct: 11  KTADEAEKLKQRIANGEAFDVLAKKFSTCPSGKRGGDLGEVRPGQMVGAIDQVIFKKPLR 70

Query: 257 TT-NPYVTQKGVEYIA 271
               P  ++ G   + 
Sbjct: 71  VVHGPIKSKFGYHLVQ 86


>gi|242207385|ref|XP_002469546.1| predicted protein [Postia placenta Mad-698-R]
 gi|220731350|gb|EED85195.1| predicted protein [Postia placenta Mad-698-R]
          Length = 143

 Score = 50.1 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/119 (10%), Positives = 34/119 (28%), Gaps = 2/119 (1%)

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
               +   E+   + +  ++ V+    R        N  +++    + ++  E      P
Sbjct: 21  DSVWDPPTELTQEQVRASHLLVKHRGSRRPSSWKEQNITRSKEEAIEILRGYEAEIDGSP 80

Query: 214 KDC-NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
           +       + +        G         +   F++     +    ++   T  GV  I
Sbjct: 81  ERFGELARQHSDCSSHAKDGDLGSFGPGQMQKPFEDATYALNVGQISDIVDTDSGVHLI 139


>gi|260548864|ref|ZP_05823086.1| peptidyl-prolyl cis-trans isomerase C [Acinetobacter sp. RUH2624]
 gi|293611035|ref|ZP_06693334.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|260408032|gb|EEX01503.1| peptidyl-prolyl cis-trans isomerase C [Acinetobacter sp. RUH2624]
 gi|292826687|gb|EFF85053.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 96

 Score = 50.1 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 6/68 (8%), Positives = 22/68 (32%), Gaps = 1/68 (1%)

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT-TNPYVTQ 264
           ++            +++++       G+   + +  L P    ++  +       P  +Q
Sbjct: 21  KKKLQSGADFAKLAKQYSTCNSAKRGGELGEVKKGQLVPVIDKVVFTAAERVLQGPIKSQ 80

Query: 265 KGVEYIAI 272
            G   + +
Sbjct: 81  FGYHLLEV 88


>gi|27379919|ref|NP_771448.1| peptidyl-prolyl cis-trans isomerse [Bradyrhizobium japonicum USDA
           110]
 gi|27353072|dbj|BAC50073.1| blr4808 [Bradyrhizobium japonicum USDA 110]
          Length = 632

 Score = 50.1 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/393 (9%), Positives = 91/393 (23%), Gaps = 84/393 (21%)

Query: 1   MTSKVFTSLSDFI-KLLTTYFVLIIFCIVPIVSYKSW--AMSSRIRTTINGEVITDGDIS 57
           M   +  + S+++ K +    + ++     I                 I    I+  +  
Sbjct: 1   MLRGMRKASSNWLGKTIMAVVMGVLIISFGIWGIADIFRGFGQSTVAKIGRTEISLNEFR 60

Query: 58  K----RIALLKLQKING---------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           +    R+  +  Q              L++  +Q+ I E    +E  + G+    + +  
Sbjct: 61  QIYTDRLQQISRQFGRPLTPDQARAFGLDRQVLQQTIAEAALDEEARRLGLGQSDDQIRQ 120

Query: 105 FFVQHARNTG----LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV------------- 147
             +      G      A  F + +   G  +  +       S+   +             
Sbjct: 121 VIMNDPNFKGVGGSFDANRFQAVIRNFGYTEQRYVSEQRKVSLRRQLTGTIGAGLEPPKA 180

Query: 148 --------------------------------------VKNDFMLKYGNLEMEIPANKQK 169
                                                    D  +++   E    A    
Sbjct: 181 MIDVLTRFQNEQRAIEFARLDAAQAGTIDAPSPEALAAYFEDHKVQFRAPEYRKIAFVVI 240

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
                 +   +         ++ +++    ++ +  +       +     E+ A  +   
Sbjct: 241 SPEEIGKWSEVSDEDAKKLFDQRKDRLGTPEKRQIHQIVFPNAAEAQTARERLAGGMSFE 300

Query: 230 SIG----------KAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
            +G              + +S L P              + P   + G   + +      
Sbjct: 301 DLGKERGLSASDVDLGLVTKSSLDPAVGDAAFALPAGEISQPIQGRLGTAIVKVDKIEPG 360

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
               A  A L          +     V  LR  
Sbjct: 361 V--EANYASLVGDIKREIATERARVKVADLRDK 391


>gi|262278967|ref|ZP_06056752.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259318|gb|EEY78051.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter calcoaceticus
           RUH2202]
          Length = 621

 Score = 50.1 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 55/194 (28%), Gaps = 4/194 (2%)

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
                  D      N FKQ  ++   +  V  +         E E+          T ++
Sbjct: 204 ASNQEATDYYNKHQNEFKQQASVDVDYVVVSPSLMAKPAPATEAELQQ-AYSKFVETQKK 262

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY- 236
              RTV   +     ++    QK  K+                +F+      + G     
Sbjct: 263 DAKRTVKHILITTDARDDAAAQKLAKEVYAKIQGGLTFAQAASQFSEDPSSKAKGGLVEA 322

Query: 237 LLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAIC-DKRDLGGEIALKAYLSAQNTP 294
                    F + ++       + P  TQ G   I        +    A KA L+A+   
Sbjct: 323 YAPGVFSDAFDKTVVSLKNGQISQPVKTQYGYHIIEAETQANQIPSFEAEKARLTAEVEK 382

Query: 295 TKIEKHEAEYVKKL 308
            K+    ++ V  L
Sbjct: 383 NKVATVYSDTVNSL 396



 Score = 49.3 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/305 (11%), Positives = 84/305 (27%), Gaps = 23/305 (7%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
                T +  ++  +     L    +V I  Y +    + +  T+NG+ I+  D+     
Sbjct: 1   MESFRTVIKGWLGKVLLILFLTPLALVGIEGYFNRGNKADVAKTVNGQEISKKDLETLTQ 60

Query: 62  LLKLQK-----------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQ 108
             K Q                ++  A+  L+   L  Q+ EK GI+     +        
Sbjct: 61  SYKEQYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDTQIEQMLAQQP 120

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
             +  G  ++       +     +        Q     ++ + F       ++++     
Sbjct: 121 SLQENGQFSQKLYENYLRSIGMTSQGLISSLRQDHALKMLTSTFSDYSLVSKVDLMQIAN 180

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
                         +          NQ       K   E + +   D + +    S +  
Sbjct: 181 LQTEQRTLHLASIKLDGYKTGLTASNQEATDYYNKHQNEFKQQASVDVDYVVVSPSLMAK 240

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
            +        E++L   +   ++  + +             +   D RD      L   +
Sbjct: 241 PAP-----ATEAELQQAYSKFVETQKKDAKRTVK-----HILITTDARDDAAAQKLAKEV 290

Query: 289 SAQNT 293
            A+  
Sbjct: 291 YAKIQ 295


>gi|169796089|ref|YP_001713882.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
           [Acinetobacter baumannii AYE]
 gi|213157178|ref|YP_002319223.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii
           AB0057]
 gi|215483544|ref|YP_002325763.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|301347497|ref|ZP_07228238.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii AB056]
 gi|301511279|ref|ZP_07236516.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii AB058]
 gi|169149016|emb|CAM86893.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase)
           [Acinetobacter baumannii AYE]
 gi|213056338|gb|ACJ41240.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii
           AB0057]
 gi|213987782|gb|ACJ58081.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii
           AB307-0294]
          Length = 621

 Score = 50.1 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 57/233 (24%), Gaps = 7/233 (3%)

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
            L+ +    Q           +  +     +      S ++ + + +K            
Sbjct: 168 SLVSKVDLMQIANLQTEQRTLHLASIKLDPYKAGLTASNQEATDYYNKHQNEFKQPASVD 227

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
               +    +             +  A   + +    +    R V   +     ++    
Sbjct: 228 VDYVVLSPSLMAKPAPATDAELKQAYAKFVETQQKDAK----RIVKHILITTDARDDAAA 283

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNN 256
           QK  KD                +F+         G  +          F + +L      
Sbjct: 284 QKLAKDVYAKIQGGLSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSLKNGQ 343

Query: 257 TTNPYVTQKGVEYIAIC-DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
            + P  TQ G   I        +    A K  L A+    K+    ++ V  L
Sbjct: 344 ISQPVKTQYGYHIIEAETQANQIPSFEAEKPRLIAEVEKNKVASVYSDTVNSL 396



 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/319 (10%), Positives = 83/319 (26%), Gaps = 23/319 (7%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
                T +  ++  +     L    +V I  Y +    + +  T+NG+ I+  D+     
Sbjct: 1   MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQ 60

Query: 62  LLKLQK-----------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQ 108
             K Q                ++  A+  L+   L  Q+ EK GI+     +        
Sbjct: 61  RYKEQYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQQP 120

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
             +  G  ++       +     +        Q     ++ + F       ++++     
Sbjct: 121 SLQENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTSTFADYSLVSKVDL-MQIA 179

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
            ++      +L    L         +           +    +           +  +  
Sbjct: 180 NLQTEQRTLHLASIKLDPYKAGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSLMA 239

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
                     +++L   +   ++  Q +             +   D RD      L   +
Sbjct: 240 KPA----PATDAELKQAYAKFVETQQKDAKRIVK-----HILITTDARDDAAAQKLAKDV 290

Query: 289 SAQNTPTKIEKHEAEYVKK 307
            A+          A    +
Sbjct: 291 YAKIQGGLSFAQAAAQFSE 309


>gi|145484021|ref|XP_001428033.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124395116|emb|CAK60635.1| unnamed protein product [Paramecium tetraurelia]
          Length = 115

 Score = 50.1 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 7/79 (8%), Positives = 20/79 (25%), Gaps = 1/79 (1%)

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
            +    +   +   +    L       ++ +        G         +  QF+++   
Sbjct: 33  SDADAEKGIREIRAQVENNLNLFAKIAQERSECSSCQKGGDLGDFTRGQMQKQFEDVAFA 92

Query: 253 -SQNNTTNPYVTQKGVEYI 270
                 + P  +  G   I
Sbjct: 93  LKVGELSQPVKSDSGWHII 111


>gi|82701375|ref|YP_410941.1| hypothetical protein Nmul_A0241 [Nitrosospira multiformis ATCC
           25196]
 gi|82409440|gb|ABB73549.1| hypothetical protein Nmul_A0241 [Nitrosospira multiformis ATCC
           25196]
          Length = 330

 Score = 50.1 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/292 (6%), Positives = 62/292 (21%), Gaps = 53/292 (18%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE-----LEKIAVQELIVETLKKQE 89
           S   +S++   +N   I+   ++  +A       N       + +  +  L+ + L    
Sbjct: 36  SSQPASQVAAKVNSGEISVHQLNYVLARATRNSANSPENASRIRREVLDRLVDQEL---- 91

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
                                     + E   +    +             + +    ++
Sbjct: 92  --------------------------AVEQAINKKLDRSPEVLMALDNARREILARAYLE 125

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK----RIKDA 205
                       E      +   +     +       +P +        +     +  + 
Sbjct: 126 QITAATPKPTVEEAKTYYSEHPQLFAERRIYNIQEIVLPSSAGVADELREMLDSGKPMED 185

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQK 265
               L+                              +  +    +   +          +
Sbjct: 186 IAKWLKGKDIKFAAGSA-------------TRSAEQIPLEILPKIHPLKPGQGLLIQGPQ 232

Query: 266 GVEYIAICDKRDLGGEIALK-AYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            +  + I   +      A     +       +  +     +K L++ A I Y
Sbjct: 233 SITLMRIAAAQTAPITEAAALPRIQQFLGNQRAAEAARGEIKALKAKANITY 284


>gi|303289267|ref|XP_003063921.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454237|gb|EEH51543.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 115

 Score = 50.1 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 6/76 (7%), Positives = 18/76 (23%), Gaps = 1/76 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             + + +    E         +   K +        G   +     +   F++       
Sbjct: 36  AAMDELMAYKAEIDAGNVTFADLAAKVSDCSSAKHGGDLGFFGPGKMQKAFEDGAFALEV 95

Query: 255 NNTTNPYVTQKGVEYI 270
              +    +  G+  I
Sbjct: 96  GAMSGVVDSDSGLHII 111


>gi|301594637|ref|ZP_07239645.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii AB059]
          Length = 606

 Score = 50.1 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 57/233 (24%), Gaps = 7/233 (3%)

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
            L+ +    Q           +  +     +      S ++ + + +K            
Sbjct: 153 SLVSKVDLMQIANLQTEQRTLHLASIKLDPYKAGLTASNQEATDYYNKHQNEFKQPASVD 212

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
               +    +             +  A   + +    +    R V   +     ++    
Sbjct: 213 VDYVVLSPSLMAKPAPATDAELKQAYAKFVETQQKDAK----RIVKHILITTDARDDAAA 268

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNN 256
           QK  KD                +F+         G  +          F + +L      
Sbjct: 269 QKLAKDVYAKIQGGLSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSLKNGQ 328

Query: 257 TTNPYVTQKGVEYIAIC-DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
            + P  TQ G   I        +    A K  L A+    K+    ++ V  L
Sbjct: 329 ISQPVKTQYGYHIIEAETQANQIPSFEAEKPRLIAEVEKNKVASVYSDTVNSL 381



 Score = 40.8 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 32/304 (10%), Positives = 78/304 (25%), Gaps = 23/304 (7%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK--------- 67
                L    +V I  Y +    + +  T+NG+ I+  D+       K Q          
Sbjct: 1   LLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQRYKEQYLAAVKGDES 60

Query: 68  --INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQHARNTGLSAEDFSSF 123
                 ++  A+  L+   L  Q+ EK GI+     +          +  G  ++     
Sbjct: 61  LLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQQPSLQENGQFSQKLYEN 120

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
             +     +        Q     ++ + F       ++++      ++      +L    
Sbjct: 121 YLRSIGMTSEGLIASLRQDHALKMLTSTFADYSLVSKVDL-MQIANLQTEQRTLHLASIK 179

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
           L         +           +    +           +  +            +++L 
Sbjct: 180 LDPYKAGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSLMAKPA----PATDAELK 235

Query: 244 PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAE 303
             +   ++  Q +             +   D RD      L   + A+          A 
Sbjct: 236 QAYAKFVETQQKDAKRIVK-----HILITTDARDDAAAQKLAKDVYAKIQGGLSFAQAAA 290

Query: 304 YVKK 307
              +
Sbjct: 291 QFSE 294


>gi|322698790|gb|EFY90557.1| peptidyl-prolyl cis/trans isomerase [Metarhizium acridum CQMa 102]
          Length = 198

 Score = 49.7 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 8/92 (8%), Positives = 22/92 (23%), Gaps = 1/92 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R   +   +        ++       + +       +     +        G   Y    
Sbjct: 101 RPSSWRESEITRSKDEAMEIIKAHEAKIKSGAISLGDLAPTESDCSSARKRGDLGYFGRG 160

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
           D+  +F++          +    T  G+  I 
Sbjct: 161 DMQKEFEDAAFALKPGEMSGVVETASGLHLIE 192


>gi|220928200|ref|YP_002505109.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           cellulolyticum H10]
 gi|219998528|gb|ACL75129.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           cellulolyticum H10]
          Length = 347

 Score = 49.7 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/330 (10%), Positives = 100/330 (30%), Gaps = 39/330 (11%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRI-------RTTINGEVITDGDISKRIALLKLQ 66
           +      + +   +  I+   +   ++            +  + I+  + +  +      
Sbjct: 3   RKFVNALITVAMVLTSIIPASNTFAATAKTATPETHVAKVGTDKISKEEYNFFLRDAISM 62

Query: 67  KIN-------------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF-- 105
             +                      +KIA+  ++   ++  + + + IT   N ++ F  
Sbjct: 63  IQSYFNSYNVDWNAKINDMKASEYAKKIALDNIVDFKIQLSKAKDAKITLTKNEMDEFNG 122

Query: 106 -FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
               +  +   + +D  + +  +        +             ++   K+   + E+ 
Sbjct: 123 NMNSYLNSLASTTKDQENIIKNETGFTLAQFKSFYNNVYIVRKFASETQKKFNCTDTELK 182

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
                 KN+  +  +   +  +  +N         +  K AEE+ L++    +       
Sbjct: 183 KYYNSNKNLFYKVVVGHILFLTTDENNQSTPKKEAEAKKKAEETLLKINSPNSDFAALVK 242

Query: 225 KIHDV-----SIGKAQYLLESDLHPQFQNLLKKSQNNT--TNPYVTQKGVEYIAICDKRD 277
           ++ +      + GK   +  +   P+FQN           T    T  G   + +     
Sbjct: 243 ELSEDPGSKETGGKYTVMNNNQFVPEFQNWAVNPSRKVGDTGIIKTSYGFHVMKLM---K 299

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
           +     LK+ + +     K + + + + K 
Sbjct: 300 IYSFNQLKSDIKSSYIIKKYDDNLSAWRKD 329


>gi|294810228|ref|ZP_06768893.1| hypothetical protein CW3_4061 [Bacteroides xylanisolvens SD CC 1b]
 gi|294442585|gb|EFG11387.1| hypothetical protein CW3_4061 [Bacteroides xylanisolvens SD CC 1b]
          Length = 327

 Score = 49.7 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/206 (10%), Positives = 60/206 (29%), Gaps = 5/206 (2%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIAL--LKLQKINGELEKIAVQE 79
             +F  + I         + +   +NGE I   +++ +       +     E++   +  
Sbjct: 3   FFLFSFLFIACNTPVINKNDVVAEVNGEQILLSELASQSKQEIFDILNTAYEIKSRVLAG 62

Query: 80  LIVETLKKQEIEKSGITFD---SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           LI + L +   +K  ++ +      V         +        +     +G      K 
Sbjct: 63  LIKQKLLEDAAKKENMSLEEFIDWFVQQKICVGQDSLKKRYGFNTQSFYVKGELIPLVKG 122

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
            L  +  +   +++  +    +   +    K+ +      E ++R +      N      
Sbjct: 123 SLEEKLSYQQKLRSRIVQALVDSLYQKADIKRFLYPPKQPECVVRDLCVYYRGNLDSPVS 182

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKF 222
           F+     + E             + +
Sbjct: 183 FIVASDYNCERCVQFEKTLSKLYDNY 208


>gi|322508302|gb|ADX03756.1| ppiD [Acinetobacter baumannii 1656-2]
          Length = 601

 Score = 49.7 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 57/233 (24%), Gaps = 7/233 (3%)

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
            L+ +    Q           +  +     +      S ++ + + +K            
Sbjct: 148 SLVSKVDLMQIANLQTEQRTLHLASIKLDPYKAGLTASDQEATDYYNKHQNEFKQPASVD 207

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
               +    +             +  A   + +    +    R V   +     ++    
Sbjct: 208 VDYVVLSPSLMAKPAPATDAELKQAYAKFVETQQKDAK----RIVKHILITTDARDDAAA 263

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNN 256
           QK  KD                +F+         G  +          F + +L      
Sbjct: 264 QKLAKDVYAKIQGGLSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSLKNGQ 323

Query: 257 TTNPYVTQKGVEYIAIC-DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
            + P  TQ G   I        +    A K  L A+    K+    ++ V  L
Sbjct: 324 ISQPVKTQYGYHIIEAETQANQIPSFEAEKPRLIAEVEKNKVASVYSDTVNSL 376



 Score = 36.6 bits (82), Expect = 5.1,   Method: Composition-based stats.
 Identities = 31/296 (10%), Positives = 78/296 (26%), Gaps = 23/296 (7%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK-----------INGELE 73
             +V I  Y +    + +  T+NG+ I+  D+       K Q                ++
Sbjct: 4   LALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQRYKEQYLAAVKGDESLLNLPVIQ 63

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQHARNTGLSAEDFSSFLDKQGIGD 131
             A+  L+   L  Q+ EK GI+  +  +          +  G  ++       +     
Sbjct: 64  AKALDILVSRNLLIQQAEKLGISLSNAQIEQMLAQQPSLQENGQFSQKLYENYLRSIGMT 123

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
           +        Q     ++ + F       ++++      ++      +L    L       
Sbjct: 124 SEGLIASLRQDHALKMLTSTFADYSLVSKVDL-MQIANLQTEQRTLHLASIKLDPYKAGL 182

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
             +           +    +           +  +            +++L   +   ++
Sbjct: 183 TASDQEATDYYNKHQNEFKQPASVDVDYVVLSPSLMAKPA----PATDAELKQAYAKFVE 238

Query: 252 KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
             Q +             +   D RD      L   + A+          A    +
Sbjct: 239 TQQKDAKRIVK-----HILITTDARDDAAAQKLAKDVYAKIQGGLSFAQAAAQFSE 289


>gi|225872276|ref|YP_002753731.1| hypothetical protein ACP_0603 [Acidobacterium capsulatum ATCC
           51196]
 gi|225791583|gb|ACO31673.1| hypothetical protein ACP_0603 [Acidobacterium capsulatum ATCC
           51196]
          Length = 245

 Score = 49.7 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 54/151 (35%), Gaps = 13/151 (8%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKR-----IALLKLQKINGELEKIA----VQEL 80
             +  S  +  R+   +NG+V+   D+ +      +  L+       +++ A    ++ L
Sbjct: 25  AAASGSPVVLDRVIAIVNGQVLLQSDVDEERRLSALEPLRNSAGPESIDQAARHLILRTL 84

Query: 81  IVETLKKQEIEKSGITF----DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           ++E +K+Q+   +            +     + A  +  S E ++ FL K G+ +   + 
Sbjct: 85  VLEQMKEQDQPTTVSQKWTQRGLTELRGTMTRCAPYSCTSQEGWALFLKKHGLTEGEAEA 144

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
             + +      +   F         +I    
Sbjct: 145 RWSQRMAIERFIDLRFRAGIHITREQIDTYY 175


>gi|303243162|ref|ZP_07329598.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio
           cellulolyticus CD2]
 gi|302589297|gb|EFL59109.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio
           cellulolyticus CD2]
          Length = 461

 Score = 49.7 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/258 (12%), Positives = 70/258 (27%), Gaps = 11/258 (4%)

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITF--DSNTVNYFFVQHARNTGLSAEDFSS 122
           LQK + E   + + +LI + +              D     Y     A     S E  + 
Sbjct: 83  LQKTDEERNDMFLDQLIEKVVMDDYFANKSNVKVSDEEVNAYVAKYVAPRYSGSEEQTTY 142

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
           F       +   K  +    +   V           L  +   +  +      ++  +R 
Sbjct: 143 FQSMGFANEEDMKNTIKDYLLKQQVYYAAATKAGLTLTDKERKDAYEEHKSYNKKVDLRN 202

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESD 241
           +L     N  + +   Q+                   ++++       + G+ + +L  +
Sbjct: 203 ILV--AINDKRTKEQAQELANTVYTKLKNGESFEALAKQYSDDSESKENGGQKKNVLPGN 260

Query: 242 LHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI--E 298
               + N   K        P    KG E + I     +      +   S      K    
Sbjct: 261 NETDYDNAVFKAEAGQLLEPIYLAKGYEIVKIE---KVTDFYHPEEEYSQTVLVEKFLNS 317

Query: 299 KHEAEYVKKLRSNAIIHY 316
               E+ + ++ +  I  
Sbjct: 318 DKYKEWFESIKKDYQIEI 335


>gi|302916033|ref|XP_003051827.1| hypothetical protein NECHADRAFT_79295 [Nectria haematococca mpVI
           77-13-4]
 gi|256732766|gb|EEU46114.1| hypothetical protein NECHADRAFT_79295 [Nectria haematococca mpVI
           77-13-4]
          Length = 132

 Score = 49.7 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 27/85 (31%), Gaps = 6/85 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               + ++A        K      +F+        G   +  +  L P+F+      + +
Sbjct: 49  EKHAKKEEALAKLNEGVKFDEVAREFSED-KARQGGSLGWKTKGSLDPKFEEAAFVLETS 107

Query: 257 TTNP-----YVTQKGVEYIAICDKR 276
           TT         T+ G   I +  ++
Sbjct: 108 TTASPKFVEVKTEFGYHIIMVEGRK 132


>gi|242212427|ref|XP_002472047.1| predicted protein [Postia placenta Mad-698-R]
 gi|220728870|gb|EED82755.1| predicted protein [Postia placenta Mad-698-R]
          Length = 149

 Score = 49.7 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 8/91 (8%), Positives = 22/91 (24%), Gaps = 1/91 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R   +   +     +  ++       E      +      + +        G        
Sbjct: 57  RPSSWKEQNITRSKEEAIEILRGYEAEIDGSPERFGELARQHSDCSSHAKDGDLGSFGPG 116

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            +   F++     +    ++   T  GV  I
Sbjct: 117 QMQKPFEDATYALNVGQISDIVDTDSGVHLI 147


>gi|169621117|ref|XP_001803969.1| hypothetical protein SNOG_13763 [Phaeosphaeria nodorum SN15]
 gi|160704180|gb|EAT78787.2| hypothetical protein SNOG_13763 [Phaeosphaeria nodorum SN15]
          Length = 395

 Score = 49.7 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/174 (8%), Positives = 35/174 (20%), Gaps = 7/174 (4%)

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
              +             +   +         + L          K      +     +I 
Sbjct: 221 EVRRSNTKNLPYYFHPETKDSRWEPPAGTDPEKLKEFMAANHSSKGVAPANFTQTGDKIR 280

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD------AEESRLRLPKDCNK 218
           A    +K+   R                  +   + + +       AE +          
Sbjct: 281 AAHLLVKHRDSRRPASWREPKITRSKSEAEELIKKYQSQILAFEAPAEHNDPNPKSLSEL 340

Query: 219 LEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
               +        G   +    D+  +F+N          +    T  G+  I 
Sbjct: 341 ATTESDCSSARKGGDLGFFGHGDMQKEFENAAFDLKPGGVSEIVDTASGLHLIQ 394


>gi|114778306|ref|ZP_01453165.1| peptidyl-prolyl cis-trans isomerase C1 [Mariprofundus ferrooxydans
           PV-1]
 gi|114551408|gb|EAU53964.1| peptidyl-prolyl cis-trans isomerase C1 [Mariprofundus ferrooxydans
           PV-1]
          Length = 99

 Score = 49.7 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 8/62 (12%), Positives = 17/62 (27%), Gaps = 1/62 (1%)

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYI 270
                    K++        G    +    L    +N++ K        P  +Q G   +
Sbjct: 34  GADFAALARKYSLCPSKKRGGDLGEIYPGQLVRPIENVIFKQPLLKLHGPVKSQFGYHLV 93

Query: 271 AI 272
            +
Sbjct: 94  IV 95


>gi|56752198|ref|YP_172899.1| hypothetical protein syc2189_d [Synechococcus elongatus PCC 6301]
 gi|81300715|ref|YP_400923.1| hypothetical protein Synpcc7942_1906 [Synechococcus elongatus PCC
           7942]
 gi|56687157|dbj|BAD80379.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81169596|gb|ABB57936.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 246

 Score = 49.7 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/264 (7%), Positives = 68/264 (25%), Gaps = 32/264 (12%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           +    + + D++  +            +   + EL+     +      GI    + +   
Sbjct: 14  VGDREVQESDLAALLQ-----------KHQLLPELVKR--MRFAQVIEGIEVQPDVLEQE 60

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
                +  G++ +     L +Q I    +   +  +       + +F  +  N  ++  +
Sbjct: 61  CQAWCKQNGIAPQQLPQLLAQQQISLEQWMSSVENRLRLRLFQEREFSHRAENRFLKRKS 120

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
               +    +R      +                      ++         +   +F+  
Sbjct: 121 QLDLVTYSLLRHSDGHLIQELY------------------QQLLHGEATFEDLATQFSQG 162

Query: 226 IHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL 284
               + GK   +  S       + L          P   +     I +   + +     +
Sbjct: 163 HEAKTAGKLGPVPLSQPHPALAEVLRTAQPGQILPPRNLESYWLIIRLDQLQPVAFNETI 222

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKL 308
           +  +  +     +     + +  L
Sbjct: 223 RRQMLQELFDEWLGAEVQQTLNTL 246


>gi|195346154|ref|XP_002039632.1| GM23077 [Drosophila sechellia]
 gi|194134858|gb|EDW56374.1| GM23077 [Drosophila sechellia]
          Length = 166

 Score = 49.7 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 7/91 (7%), Positives = 20/91 (21%), Gaps = 1/91 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R   +   +     +           +   +          ++        G        
Sbjct: 72  RPSSWREANITRTKEEAQLLLEVYRNKIVNQEATFEELARSYSDCSSAKRGGDLGKFGRG 131

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            +   F+    K + N  +    +  G+  I
Sbjct: 132 QMQAAFEEAAFKLNVNQLSGIVDSDSGLHII 162


>gi|293608199|ref|ZP_06690502.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828772|gb|EFF87134.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 621

 Score = 49.7 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 56/194 (28%), Gaps = 4/194 (2%)

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
                  D      N FKQ  ++   +  +  +         E E+          T ++
Sbjct: 204 ASNQEATDYYNKHQNEFKQQASVDVDYVVLSPSMMTKPAPATEAELQQ-AYAKFVETQKK 262

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
              RTV   +     ++    QK  K+                +F+      + G     
Sbjct: 263 DAKRTVKHILITTDARDDAAAQKLAKEVYAKIQGGLSFAQAASQFSEDPSSKAKGGLVEA 322

Query: 238 LESDL--HPQFQNLLKKSQNNTTNPYVTQKGVEYIAIC-DKRDLGGEIALKAYLSAQNTP 294
             S +      + +L       + P  TQ G   I        +    A KA L+A+   
Sbjct: 323 YASGVFSDAFDKTVLSLKNGQVSQPVKTQYGYHIIEAETQANQIPSFEAEKARLTAEVEK 382

Query: 295 TKIEKHEAEYVKKL 308
            K+    ++ V  L
Sbjct: 383 NKVATVYSDAVNSL 396



 Score = 49.7 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/305 (10%), Positives = 82/305 (26%), Gaps = 23/305 (7%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
                T +  ++  +     L    +V I  Y +    + +  T+NG+ I+  D+     
Sbjct: 1   MESFRTVIKGWLGKVLLILFLTPLALVGIEGYFNRGNKADVAKTVNGQEISKKDLETLTQ 60

Query: 62  LLKLQK-----------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQ 108
             K Q                ++  A+  L+   L  Q+ EK GI+     +        
Sbjct: 61  SYKEQYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQQP 120

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
             +  G  ++       +     +        Q     ++ + F       ++++     
Sbjct: 121 SLQENGQFSQKLYENYLRSIGMTSQGLIASLRQDHALKMLTSTFADYSLVSKVDL-MQIA 179

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
            ++      +L    L +       +           +    +           +  +  
Sbjct: 180 NLQTEQRTLHLASIKLDAYKTGLTASNQEATDYYNKHQNEFKQQASVDVDYVVLSPSMMT 239

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
                     E++L   +   ++  + +             +   D RD      L   +
Sbjct: 240 KPA----PATEAELQQAYAKFVETQKKDAKRTVK-----HILITTDARDDAAAQKLAKEV 290

Query: 289 SAQNT 293
            A+  
Sbjct: 291 YAKIQ 295


>gi|325662341|ref|ZP_08150950.1| hypothetical protein HMPREF0490_01689 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471343|gb|EGC74566.1| hypothetical protein HMPREF0490_01689 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 353

 Score = 49.7 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/306 (9%), Positives = 76/306 (24%), Gaps = 34/306 (11%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI----------------------N 69
           +       S +  TI GE +T G  +      + +                         
Sbjct: 22  AGCGSVKDSDVVVTIGGEKVTVGVANFFARYQQAEYETYYSGVMGEDMWSTEISKGKSYE 81

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
             ++   ++ L    + +  +    +                    +  +    +     
Sbjct: 82  ETVKNQILETLENMYVLEDHMGDYKVEITEEEKKKISEAAKAFDEANGLEEKEAVSGTTE 141

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                   + IQ      +  D   +  + E    + +    ++T  +    T       
Sbjct: 142 NVERMLTLVTIQEKMQKAMVADVDTEVSDEEAAQKSMQYVNLSLTKTKEDGSTEQM---- 197

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
                +    +  K AE  +  + ++ +  +    K  +V          +         
Sbjct: 198 ----TEEEKAEAKKKAEAFQKAVKEEADFAKTAKEKELEVKTMTFDEETTTPDEGLMTKA 253

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
            K  +   +    T  G   + +    D     A K  ++      + EK   +  ++ +
Sbjct: 254 NKLGEGEVSEVIETDSGYYVLKVTSLLDREATDAEKESIA----EERKEKQYKDLCEEWK 309

Query: 310 SNAIIH 315
            +  I 
Sbjct: 310 KDVKIE 315


>gi|332851740|ref|ZP_08433665.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013150]
 gi|332865885|ref|ZP_08436665.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013113]
 gi|332729747|gb|EGJ61082.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013150]
 gi|332734935|gb|EGJ66021.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013113]
          Length = 621

 Score = 49.7 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 57/233 (24%), Gaps = 7/233 (3%)

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
            L+ +    Q           +  +     +      S ++ + + +K            
Sbjct: 168 SLVSKVDLMQIANLQTEQRTLHLASIKLDPYKTGLTASNQEATDYYNKHQNEFKQPASVD 227

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
               +    +             +  A   + +    +    R V   +     ++    
Sbjct: 228 VDYVVLSPSLMAKPAPATDAELKQAYAKFVETQQKDAK----RIVKHILITTDARDDAAA 283

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNN 256
           QK  KD                +F+         G  +          F + +L      
Sbjct: 284 QKLAKDVYAKIQGGLSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSLKNGQ 343

Query: 257 TTNPYVTQKGVEYIAIC-DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
            + P  TQ G   I        +    A K  L A+    K+    ++ V  L
Sbjct: 344 ISQPVKTQYGYHIIEAETQANQIPSFEAEKPRLIAEVEKNKVASVYSDTVNSL 396



 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/319 (10%), Positives = 83/319 (26%), Gaps = 23/319 (7%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
                T +  ++  +     L    +V I  Y +    + +  T+NG+ I+  D+     
Sbjct: 1   MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQ 60

Query: 62  LLKLQK-----------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQ 108
             K Q                ++  A+  L+   L  Q+ EK GI+     +        
Sbjct: 61  RYKEQYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQQP 120

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
             +  G  ++       +     +        Q     ++ + F       ++++     
Sbjct: 121 SLQENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTSTFADYSLVSKVDL-MQIA 179

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
            ++      +L    L         +           +    +           +  +  
Sbjct: 180 NLQTEQRTLHLASIKLDPYKTGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSLMA 239

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
                     +++L   +   ++  Q +             +   D RD      L   +
Sbjct: 240 KPA----PATDAELKQAYAKFVETQQKDAKRIVK-----HILITTDARDDAAAQKLAKDV 290

Query: 289 SAQNTPTKIEKHEAEYVKK 307
            A+          A    +
Sbjct: 291 YAKIQGGLSFAQAAAQFSE 309


>gi|157110825|ref|XP_001651262.1| peptidyl-prolyl cis/trans isomerase, putative [Aedes aegypti]
 gi|108883863|gb|EAT48088.1| peptidyl-prolyl cis/trans isomerase, putative [Aedes aegypti]
          Length = 135

 Score = 49.7 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             Q +I +A E              ++        G   + +   +   FQ+       +
Sbjct: 50  EKQGKILEALEKLKEGQSFNVVATNYSED-KARQGGDLGWQIRGAMVGPFQDAAFALPIS 108

Query: 257 TT-------NPYVTQKGVEYIAICDKR 276
           T         P  T+ G   I +  K+
Sbjct: 109 TINAPKYTDPPIKTKFGYHIIMVEGKK 135


>gi|296283875|ref|ZP_06861873.1| peptidyl-prolyl isomerase [Citromicrobium bathyomarinum JL354]
          Length = 646

 Score = 49.7 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/376 (8%), Positives = 77/376 (20%), Gaps = 84/376 (22%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRI--RTTINGEVITDGDISKRIALLKLQKINGELE- 73
               + I F    + +  S+   S       +  E +T  ++ +       Q    E   
Sbjct: 21  FLVLIAIAFAAGDVGNSGSFGGLSGTNSVAVVGDEDVTTAELRQSADNAFRQVQQDEPTL 80

Query: 74  -----------KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
                         +  L+      +  +  G+    N +N      +   G      + 
Sbjct: 81  SMAEFVEDGGLMQVLDTLLDRVAVSEFGKMLGVRAGENLINSEIRMISAFRGPDGSFSTE 140

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKN-------------------------------- 150
                        Q +        + +                                 
Sbjct: 141 AYRAALQQQGLTDQIVRDDLSDGLIAQQVLVPAVFGAKFPDSIVARYATQLREKREGSIA 200

Query: 151 -----DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN----QGFVQKR 201
                 F  K    + ++       +   +R    +        ++L +         K+
Sbjct: 201 LVPAELFAPKDDPTDKQLQTFYNANRTDFMRPERRQVRYALFGADQLADSVEPTAAEIKK 260

Query: 202 IKDAEESRLRLPKDCNKL--------------EKFASKIHDVSIGK--------AQYLLE 239
             D      R  +D                  E+ A       I +           +  
Sbjct: 261 RYDDNADLYRASEDRTFTQLIVPTRQAAESFRERVADGASLTQIAEEAGLETQQIGPIKR 320

Query: 240 SDLHPQF-----QNLLKKSQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQN 292
            D   Q      + +    +        +  G   + I D +          +  ++   
Sbjct: 321 EDYAQQANAAVAEAVFSADRGEIAPIARSPLGYHVVRIDDVKTIPARTLAQARDEIADAL 380

Query: 293 TPTKIEKHEAEYVKKL 308
              K  +   E    +
Sbjct: 381 RADKQRRALTELASDI 396


>gi|255942625|ref|XP_002562081.1| Pc18g02370 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586814|emb|CAP94461.1| Pc18g02370 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 129

 Score = 49.7 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 6/85 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               + ++A E      K      +F+        G   +  +  L P F+N+  + + +
Sbjct: 46  EKHAKKEEALEKLRNGTKFDEVAREFSED-KARQGGSLGWKTKGGLDPAFENVAFELETS 104

Query: 257 TTNP-----YVTQKGVEYIAICDKR 276
           TT         T  G   I +  ++
Sbjct: 105 TTGNPKYAEVKTAFGYHIIMVEGRK 129


>gi|260555138|ref|ZP_05827359.1| ppic-type ppiase domain-containing protein [Acinetobacter baumannii
           ATCC 19606]
 gi|260411680|gb|EEX04977.1| ppic-type ppiase domain-containing protein [Acinetobacter baumannii
           ATCC 19606]
          Length = 621

 Score = 49.7 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 58/233 (24%), Gaps = 7/233 (3%)

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
            L+ +    Q           +  +     +      S ++ + + +K            
Sbjct: 168 SLVSKVDLMQIANLQTEQRTLHLASIKLDPYKAGLTASNQEATDYYNKHQNEFKQPASVD 227

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
               +    +             +  A   + +    +    R V   +     ++    
Sbjct: 228 VDYVVLSPSLMAKPAPATDAELKQAYAKFVETQQKDAK----RIVKHILITTDARDDAAA 283

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNN 256
           QK  KD                +F+         G  +          F + +L      
Sbjct: 284 QKLAKDVYAKIQGGLSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSLKNGQ 343

Query: 257 TTNPYVTQKGVEYIAIC-DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
            + P  TQ G   I        +    A K+ L A+    K+    ++ V  L
Sbjct: 344 ISQPVKTQYGYHIIEAETQANQIPSFEAEKSRLIAEVEKNKVASVYSDTVNSL 396



 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/319 (10%), Positives = 83/319 (26%), Gaps = 23/319 (7%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
                T +  ++  +     L    +V I  Y +    + +  T+NG+ I+  D+     
Sbjct: 1   MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQ 60

Query: 62  LLKLQK-----------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQ 108
             K Q                ++  A+  L+   L  Q+ EK GI+     +        
Sbjct: 61  RYKEQYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQQP 120

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
             +  G  ++       +     +        Q     ++ + F       ++++     
Sbjct: 121 SLQENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTSTFADYSLVSKVDL-MQIA 179

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
            ++      +L    L         +           +    +           +  +  
Sbjct: 180 NLQTEQRTLHLASIKLDPYKAGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSLMA 239

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
                     +++L   +   ++  Q +             +   D RD      L   +
Sbjct: 240 KPA----PATDAELKQAYAKFVETQQKDAKRIVK-----HILITTDARDDAAAQKLAKDV 290

Query: 289 SAQNTPTKIEKHEAEYVKK 307
            A+          A    +
Sbjct: 291 YAKIQGGLSFAQAAAQFSE 309


>gi|258545268|ref|ZP_05705502.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826]
 gi|258519481|gb|EEV88340.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826]
          Length = 610

 Score = 49.7 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 44/121 (36%), Gaps = 5/121 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +    ++ I  L      I    + +  +     ++    T+NG+ +      ++ 
Sbjct: 25  MLEDIREKKTNRITYLLVIIAGIGMLFIGVPYFNHGGETN--IATVNGQEVPLRAYQEQY 82

Query: 61  ALLKLQKI---NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
             ++ Q+      +L++ AV+ L+  TL +Q+   S      + +     +   N     
Sbjct: 83  RDIQQQQPDLSETDLKQRAVRSLVERTLFQQQALNSRYRLPDSALYRIIKEQFGNDENYQ 142

Query: 118 E 118
           +
Sbjct: 143 Q 143


>gi|261197425|ref|XP_002625115.1| peptidyl-prolyl cis-trans isomerase pin4 [Ajellomyces dermatitidis
           SLH14081]
 gi|239595745|gb|EEQ78326.1| peptidyl-prolyl cis-trans isomerase pin4 [Ajellomyces dermatitidis
           SLH14081]
 gi|239606739|gb|EEQ83726.1| peptidyl-prolyl cis-trans isomerase pin4 [Ajellomyces dermatitidis
           ER-3]
 gi|327354945|gb|EGE83802.1| peptidyl-prolyl cis-trans isomerase pin4 [Ajellomyces dermatitidis
           ATCC 18188]
          Length = 131

 Score = 49.7 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 6/85 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               + ++A E      K  +   +F+        G   + +   LH  F+ +  + + +
Sbjct: 48  EKHSKKEEAAEKLRNGAKFDDVAREFSED-KARQGGSLGWKVRGSLHGDFEKVAYELETS 106

Query: 257 TTN-P----YVTQKGVEYIAICDKR 276
           TT  P      T  G   I +  ++
Sbjct: 107 TTANPKWAEVKTGFGYHIIMVEGRK 131


>gi|255038469|ref|YP_003089090.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dyadobacter
           fermentans DSM 18053]
 gi|254951225|gb|ACT95925.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dyadobacter
           fermentans DSM 18053]
          Length = 705

 Score = 49.7 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/245 (6%), Positives = 53/245 (21%), Gaps = 11/245 (4%)

Query: 45  TINGEV-ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            ++  + +TD  + + ++  K +    +         I       +  K       N + 
Sbjct: 218 VVDTTIKVTDAQLEEYLSAHKKEYKGTDTRS------IEYVTFPVQPAKDDSAALYNEIK 271

Query: 104 YFFVQHA-RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                 A   +  +    ++ +                +++   V    +          
Sbjct: 272 ELARGLATAQSDSAFAAMNTDIPTPINQSYATMSDQLKEAVKTFVPGGVYGPYREGNTYY 331

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           I        +          ++ +   +         K      + +     +       
Sbjct: 332 IYKYGGTRSDSVSSAKASHILIRAENQSDSAKTAARVKAEGILAQIKAGANFEALAATSS 391

Query: 223 ASKIHDVSIGKAQYL-LESDLHPQFQNLLKKS--QNNTTNPYVTQKGVEYIAICDKRDLG 279
           A        G   Y      +   F+  +  +           +Q G   I +   +   
Sbjct: 392 ADPGSAQRGGDLGYFQNNGAMVKPFEEAVFSASAPGLIPRLVESQFGFHIIKVTAPKSNT 451

Query: 280 GEIAL 284
                
Sbjct: 452 LYRIA 456


>gi|299770348|ref|YP_003732374.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
           [Acinetobacter sp. DR1]
 gi|298700436|gb|ADI91001.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
           [Acinetobacter sp. DR1]
          Length = 621

 Score = 49.7 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 55/194 (28%), Gaps = 4/194 (2%)

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
                  D      N FKQ  ++   +  V  +         E E+          T ++
Sbjct: 204 ASNQEATDYYNKHQNEFKQQSSVDVDYVVVSPSLMAKPAPATEAELQQ-AYSKFVETQKK 262

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY- 236
              RTV   +     ++    QK  K+                +F+      + G     
Sbjct: 263 DAKRTVKHILITTDARDDAAAQKLAKEVYAKIQGGLTFAQAASQFSEDPSSKAKGGLVEA 322

Query: 237 LLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAIC-DKRDLGGEIALKAYLSAQNTP 294
                    F + ++       + P  TQ G   I        +    A KA L+A+   
Sbjct: 323 YAPGVFSDAFDKTVVSLKNGQISQPVKTQYGYHIIEAETQASQIPSFEAEKARLTAEVEK 382

Query: 295 TKIEKHEAEYVKKL 308
            K+    ++ V  L
Sbjct: 383 NKVATVYSDTVNSL 396



 Score = 48.9 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/305 (11%), Positives = 84/305 (27%), Gaps = 23/305 (7%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
                T +  ++  +     L    +V I  Y +    + +  T+NG+ I+  D+     
Sbjct: 1   MESFRTVIKGWLGKVLLILFLTPLALVGIEGYFNRGNKADVAKTVNGQEISKKDLETLTQ 60

Query: 62  LLKLQK-----------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQ 108
             K Q                ++  A+  L+   L  Q+ EK GI+     +        
Sbjct: 61  SYKEQYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDTQIEQMLAQQP 120

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
             +  G  ++       +     +        Q     ++ + F       ++++     
Sbjct: 121 SLQENGQFSQKLYENYLRSIGMTSQGLIASLRQDHALKMLTSTFSDYSLVSKVDLMQIAN 180

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
                         +          NQ       K   E + +   D + +    S +  
Sbjct: 181 LQTEQRTLHLASIKLDGYKTGLTASNQEATDYYNKHQNEFKQQSSVDVDYVVVSPSLMAK 240

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
            +        E++L   +   ++  + +             +   D RD      L   +
Sbjct: 241 PAP-----ATEAELQQAYSKFVETQKKDAKRTVK-----HILITTDARDDAAAQKLAKEV 290

Query: 289 SAQNT 293
            A+  
Sbjct: 291 YAKIQ 295


>gi|308804293|ref|XP_003079459.1| peptidyl-prolyl cis-trans isomerase C (ISS) [Ostreococcus tauri]
 gi|116057914|emb|CAL54117.1| peptidyl-prolyl cis-trans isomerase C (ISS) [Ostreococcus tauri]
          Length = 181

 Score = 49.7 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 1/64 (1%)

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                  EK ++       G+        +  +F +++     N    P  TQ G   I 
Sbjct: 113 ATFARVAEKESTCPSSKKGGELGSFRRGQMVREFDDVVFTGDLNTVLGPVDTQFGSHLIL 172

Query: 272 ICDK 275
           I D+
Sbjct: 173 ITDR 176


>gi|327303380|ref|XP_003236382.1| peptidyl-prolyl cis-trans isomerase [Trichophyton rubrum CBS
           118892]
 gi|326461724|gb|EGD87177.1| peptidyl-prolyl cis-trans isomerase [Trichophyton rubrum CBS
           118892]
          Length = 178

 Score = 49.7 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 7/109 (6%), Positives = 24/109 (22%), Gaps = 1/109 (0%)

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
               +    +       R   +   +        ++      +  +       +     +
Sbjct: 67  EGKIRASHLLIKHRDSRRPSSWRESEITRSKDEAIEILRNHKQRIQSGEASLGDIATSES 126

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                   G   +    ++  +F+           ++   T  GV  I 
Sbjct: 127 DCSSARKRGDLGFFGRGEMQAEFEQAAFALKVGEVSDIVETASGVHLIE 175


>gi|166031177|ref|ZP_02234006.1| hypothetical protein DORFOR_00863 [Dorea formicigenerans ATCC
           27755]
 gi|166029024|gb|EDR47781.1| hypothetical protein DORFOR_00863 [Dorea formicigenerans ATCC
           27755]
          Length = 353

 Score = 49.7 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/307 (9%), Positives = 79/307 (25%), Gaps = 36/307 (11%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKL-----------------------QKI 68
           +            T++   I D D++   A                           +  
Sbjct: 20  TGCGSLKGDETVATVDDTKI-DADLANFFARYTQATYETYYSAYLGEDMWNSDASDGETY 78

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
              ++   ++ L    L ++ +E   ++              +    ++ D  + +    
Sbjct: 79  EESVKSSVLKSLEDMILLEKHMEDYDVSITDEDKAMIKETTQQFLNDNSLDDKNLVSGNE 138

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
              N     +A+Q      ++     +  + E    +      +     Y  +    +  
Sbjct: 139 KTVNRALTLMAVQQKMRTAIQAGADTEVSDEEAAQKSMDYVFIS-----YQTKDDSGNSK 193

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
           D     +  ++ + +                E+  + +  ++         S      + 
Sbjct: 194 DVSDDEKAQLKSQAEAIASGLKEGGDLNALAEEQGATVQTLT---FDKDTTSPDEDLIKA 250

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
                +  +T+   T+KG     +        +        +Q    +  K   + VKK 
Sbjct: 251 ADALGEGESTDVIETEKGCYVAKVTS----LLDRTATDSKKSQIVQERQTKLYDDTVKKW 306

Query: 309 RSNAIIH 315
           R  A I 
Sbjct: 307 RKKADIK 313


>gi|242075004|ref|XP_002447438.1| hypothetical protein SORBIDRAFT_06g001060 [Sorghum bicolor]
 gi|241938621|gb|EES11766.1| hypothetical protein SORBIDRAFT_06g001060 [Sorghum bicolor]
          Length = 124

 Score = 49.3 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 6/66 (9%), Positives = 14/66 (21%), Gaps = 1/66 (1%)

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQ 264
            +         +   + +        G         +   F++          +    T 
Sbjct: 55  NQILSGQANFADLAARHSDCSSARRGGDLGTFGRKQMQKPFEDATYALKVGELSEIVDTD 114

Query: 265 KGVEYI 270
            GV  I
Sbjct: 115 SGVHVI 120


>gi|254426795|ref|ZP_05040502.1| hypothetical protein ADG881_25 [Alcanivorax sp. DG881]
 gi|196192964|gb|EDX87923.1| hypothetical protein ADG881_25 [Alcanivorax sp. DG881]
          Length = 455

 Score = 49.3 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/280 (7%), Positives = 67/280 (23%), Gaps = 34/280 (12%)

Query: 52  TDGDISKRIA-LLKLQKINGE---LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
           T  D+ +R    LK+Q  N     + +   Q+L +E +     + SG++           
Sbjct: 184 TLWDLYRRQNIQLKVQMHNLNTGFIREAIKQQLTMEYVFYWFDQHSGLSA---------- 233

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
                    A       D     +      L       +        +    ++     +
Sbjct: 234 ------RAIAAVDDCIDDAMSRDELLHDLGLMHDIHDDNPQLRALAAEVSQDQIAAYYQQ 287

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK----FA 223
            + +   V       +  +      +    +    K  +  +                ++
Sbjct: 288 HQDEFTRVERVHAYHLRVNSQAEADRIYAELLDVQKAQKAQKADSGDPAIAFADAVARYS 347

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQN--LLKKSQNNTTNPYVTQKG-----VEYIAICDKR 276
                   G   ++        +       +     + P+ +         E + +  K 
Sbjct: 348 VADDREQGGALGWIDRDSREDHWTQALAFVQPVQRVSPPFRSPATDSAPYWELLWVDQKE 407

Query: 277 ---DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                    +++   +      ++++     +      A 
Sbjct: 408 MGYQSVDSESVRYRAAQAIAREQMQQRFQTLLADATEAAT 447


>gi|262281146|ref|ZP_06058928.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257377|gb|EEY76113.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter calcoaceticus
           RUH2202]
          Length = 96

 Score = 49.3 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 6/68 (8%), Positives = 22/68 (32%), Gaps = 1/68 (1%)

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT-TNPYVTQ 264
           ++            +++++       G+   + +  L P    ++  +       P  +Q
Sbjct: 21  KKKLQSGADFAKLAKQYSTCNSAKRGGELGEVKKGQLVPVIDKVVFTAAERVLQGPIKSQ 80

Query: 265 KGVEYIAI 272
            G   + +
Sbjct: 81  FGYHLLEV 88


>gi|294888970|ref|XP_002772646.1| peptidyl-prolyl cis-trans isomerase pin1, putative [Perkinsus
           marinus ATCC 50983]
 gi|239877056|gb|EER04462.1| peptidyl-prolyl cis-trans isomerase pin1, putative [Perkinsus
           marinus ATCC 50983]
          Length = 129

 Score = 49.3 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 9/82 (10%), Positives = 23/82 (28%), Gaps = 1/82 (1%)

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
             D  + +   +++     E+ +             +      + G   Y    ++   F
Sbjct: 26  CHDISISHDEALKEIKDMIEKLKADKSLFPEMAMARSDCGSYKNGGDLGYFDRGEMQRPF 85

Query: 247 QNLLKK-SQNNTTNPYVTQKGV 267
           +           + P  T+ GV
Sbjct: 86  EEAAFNLEVGELSGPVETESGV 107


>gi|225710940|gb|ACO11316.1| Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Caligus
           rogercresseyi]
          Length = 151

 Score = 49.3 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 9/91 (9%), Positives = 22/91 (24%), Gaps = 1/91 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R   +   +     +  +      AE+ +       +    ++        G        
Sbjct: 57  RPSSWREENITRSKEEALSILNGYAEKIKSGAETLESLASTYSDCSSAKRGGDLGPFGRK 116

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
            +   F++          +    T  GV  I
Sbjct: 117 QMQKPFEDAAFALKVGEMSEAISTDSGVHLI 147


>gi|227892857|ref|ZP_04010662.1| peptidylprolyl isomerase [Lactobacillus ultunensis DSM 16047]
 gi|227865359|gb|EEJ72780.1| peptidylprolyl isomerase [Lactobacillus ultunensis DSM 16047]
          Length = 308

 Score = 49.3 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 81/290 (27%), Gaps = 39/290 (13%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIE 91
           +  S + S+    +  G  IT       +          +  K  +  +I+    +Q+  
Sbjct: 29  AACSNSGSNSTVASYKGGKITQQQYYDEMK-------KSQAGKSTLANMIINRALEQQYG 81

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
           K   +   +                   FS+ L + G+  + FK+ L    +    +   
Sbjct: 82  KYVSSKKVDKQYN------NYKKQYGSQFSAVLQQNGMTASSFKENLKTNLLSEQAL--K 133

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
            + K    + E              +  ++ +L              +   +   +    
Sbjct: 134 HIKKVTKSQEEKAWKSY------QPKVTVQHIL-----------VAKKSTAETIIKQLKD 176

Query: 212 LPKDCNKLEKFA-SKIHDVSIGKAQYL--LESDLHPQFQNLLKKSQNN--TTNPYVTQKG 266
                +  +K++         GK       ++ L   F+    K      T+ P  +Q G
Sbjct: 177 GKSFSSLAKKYSLDTATKNKAGKLPAFDSTDNTLDSAFKTAAFKLTTGEVTSTPVKSQSG 236

Query: 267 VEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE--AEYVKKLRSNAII 314
              I + +    G     K  +  +   +  +      + +  +   A +
Sbjct: 237 YHVIKMINHPAKGKFADHKKAIDDEIYASMAQDQATMKDVISTVLKRADV 286


>gi|284040856|ref|YP_003390786.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirosoma linguale
           DSM 74]
 gi|283820149|gb|ADB41987.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirosoma linguale
           DSM 74]
          Length = 706

 Score = 49.3 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/237 (9%), Positives = 52/237 (21%), Gaps = 11/237 (4%)

Query: 45  TINGE--VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
           TIN     +TD  +   ++  K +    +         I          K   +     +
Sbjct: 217 TINDTTVKVTDSQLEDYLSKHKDEYPGSDSRS------IQYVTFSVAPSKEDSSALYTQI 270

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                     T  S     +   +  +     +    +++  P          +      
Sbjct: 271 KSLARGLGAATNDSTFAQQNSDVRVPLYLTAGEMPEQLRAAIPTFAPGGIYGPFREGNTY 330

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                   K  T        +L          +   ++R +   +            +  
Sbjct: 331 FIYKYGGTKRDTNFTARASHILIQTKGLADSAKADARRRAEGILKQIQGGASFEALAQTN 390

Query: 223 ASKIHDVSIGKAQYLL-ESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKR 276
           +        G   Y      +   F+  +    S         T+ G   I +   +
Sbjct: 391 SDDGSRSVGGDLGYFKNNGQMVKPFETAVFGATSAGLIPRLVETEFGYHIINVTQPK 447


>gi|302509338|ref|XP_003016629.1| hypothetical protein ARB_04920 [Arthroderma benhamiae CBS 112371]
 gi|291180199|gb|EFE35984.1| hypothetical protein ARB_04920 [Arthroderma benhamiae CBS 112371]
          Length = 193

 Score = 49.3 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 7/109 (6%), Positives = 23/109 (21%), Gaps = 1/109 (0%)

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
               +    +       R   +   +        ++      +          +     +
Sbjct: 67  EGKIRASHLLIKHRESRRPSSWRESEITRSKDDAIEILRGHKQRIEAGEASLGDIATSES 126

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                   G   +    ++  +F+           ++   T  GV  I 
Sbjct: 127 DCSSARKRGDLGFFGRGEMQAEFEQAAFALKVGEVSDIVETASGVHLIE 175


>gi|238503942|ref|XP_002383203.1| peptidyl-prolyl cis-trans isomerase [Aspergillus flavus NRRL3357]
 gi|317138383|ref|XP_003189039.1| peptidyl-prolyl cis-trans isomerase pin4 [Aspergillus oryzae RIB40]
 gi|220690674|gb|EED47023.1| peptidyl-prolyl cis-trans isomerase [Aspergillus flavus NRRL3357]
          Length = 122

 Score = 49.3 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 6/85 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               + ++A E      K  +   +F+        G   + +   L   F+    + + +
Sbjct: 39  EKHSKKEEALEKLRNGSKFDDVAREFSED-KARQGGSLGWKVRGSLDGTFEKAAYELEPS 97

Query: 257 TTN-P----YVTQKGVEYIAICDKR 276
           TT  P      T  G   I +  ++
Sbjct: 98  TTANPKYVEVKTGFGYHIIMVEGRK 122


>gi|170721894|ref|YP_001749582.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           W619]
 gi|169759897|gb|ACA73213.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           W619]
          Length = 91

 Score = 49.3 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 6/76 (7%), Positives = 18/76 (23%), Gaps = 1/76 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
                 +  ++            +K ++       G    +    L      ++ K    
Sbjct: 11  KTADEAEKLKQRIANGEAFDVLAKKLSTCPSGKRGGDLGEVRPGQLVGAIDQVIFKKPLR 70

Query: 257 TT-NPYVTQKGVEYIA 271
               P  ++ G   + 
Sbjct: 71  VVHGPIKSKFGYHLVQ 86


>gi|169633493|ref|YP_001707229.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
           [Acinetobacter baumannii SDF]
 gi|169152285|emb|CAP01195.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase)
           [Acinetobacter baumannii]
          Length = 621

 Score = 49.3 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 58/233 (24%), Gaps = 7/233 (3%)

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
            L+ +    Q           +  +     +      S ++ + + +K            
Sbjct: 168 SLVSKVDLMQIANLQTEQRTLHLASIKLDPYKTGLTASNQEATDYYNKHQNEFKQPASVD 227

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
               +    +             +  A   + +    +    R V   +     ++    
Sbjct: 228 VDYVVLSPSLMAKPAPATDAELKQAYAKFVETQQKDAK----RIVKHILITTDARDDAAA 283

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNN 256
           QK  KD                +F+         G  +          F + +L      
Sbjct: 284 QKLAKDVYAKIQGGLSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSLKNGQ 343

Query: 257 TTNPYVTQKGVEYIAIC-DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
            + P  TQ G   I        +    A K+ L A+    K+    ++ V  L
Sbjct: 344 ISQPVKTQYGYHIIEAETQANQIPSFEAEKSRLIAEVEKNKVASVYSDTVNSL 396



 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/319 (10%), Positives = 83/319 (26%), Gaps = 23/319 (7%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
                T +  ++  +     L    +V I  Y +    + +  T+NG+ I+  D+     
Sbjct: 1   MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQ 60

Query: 62  LLKLQK-----------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQ 108
             K Q                ++  A+  L+   L  Q+ EK GI+     +        
Sbjct: 61  RYKEQYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQQP 120

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
             +  G  ++       +     +        Q     ++ + F       ++++     
Sbjct: 121 SLQENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTSTFADYSLVSKVDL-MQIA 179

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
            ++      +L    L         +           +    +           +  +  
Sbjct: 180 NLQTEQRTLHLASIKLDPYKTGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSLMA 239

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
                     +++L   +   ++  Q +             +   D RD      L   +
Sbjct: 240 KPA----PATDAELKQAYAKFVETQQKDAKRIVK-----HILITTDARDDAAAQKLAKDV 290

Query: 289 SAQNTPTKIEKHEAEYVKK 307
            A+          A    +
Sbjct: 291 YAKIQGGLSFAQAAAQFSE 309


>gi|254230430|ref|ZP_04923809.1| peptidyl-prolyl cis-trans isomerase D [Vibrio sp. Ex25]
 gi|151937031|gb|EDN55910.1| peptidyl-prolyl cis-trans isomerase D [Vibrio sp. Ex25]
          Length = 273

 Score = 49.3 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/229 (10%), Positives = 59/229 (25%), Gaps = 21/229 (9%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING---- 70
            +    +++ F    + SY     ++     +    I  G+        + +        
Sbjct: 6   KIILGLIILSFVFAGVGSYIVSGNNNS-AAKVGNTEIPRGEFEMAYQNERNRMQAQLGDY 64

Query: 71  ------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF---VQHARNTGL 115
                          K  +  +I + L  Q+ E  G+      V        Q   N   
Sbjct: 65  FSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDTQVRSMILDMPQFQSNGQF 124

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK-YGNLEMEIPANKQKMKNIT 174
             E + + L + G   + F +Y+  + +   ++      +     E++            
Sbjct: 125 DQEIYQASLRRAGFSPDSFAEYMRRELVREQLLNALQNSEFILPGEVQAEGKLFTQTRDI 184

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
               +         +   +      K   D      ++     +L   A
Sbjct: 185 RTIKIDLAEFAKNIELTDEEIQQYYKANPDNFTRPEQVKVAYIELSAEA 233


>gi|88608000|ref|YP_506608.1| hypothetical protein NSE_0732 [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600169|gb|ABD45637.1| hypothetical protein NSE_0732 [Neorickettsia sennetsu str.
           Miyayama]
          Length = 307

 Score = 49.3 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 56/166 (33%), Gaps = 12/166 (7%)

Query: 18  TYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL-EKIA 76
            + V+ +  ++  +S  S+++  +    +   +I++ D+      + +     +L     
Sbjct: 1   MFRVICVVFLLSFLSLPSYSIEVKTAAMVGDVIISNQDVRNYQNFVVMLGEKSDLSYSAV 60

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           ++++I   +  Q  ++ G+ F     +                 + F +           
Sbjct: 61  LEQMIDLEVCYQYAKRVGLPFSDQKYDAALKHLRALGINHGAHMALFEE----------- 109

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
           YL  Q    +VV      +    + +  A K+++        L R 
Sbjct: 110 YLKKQVFLSEVVDQIIRPRVRIDDSDFDAIKRELLKKKNTFKLKRI 155


>gi|227818745|ref|YP_002822716.1| hypothetical protein NGR_b05010 [Sinorhizobium fredii NGR234]
 gi|36958998|gb|AAQ87423.1| Hypothetical protein RNGR00297 [Sinorhizobium fredii NGR234]
 gi|227337744|gb|ACP21963.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
          Length = 291

 Score = 49.3 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/167 (10%), Positives = 43/167 (25%), Gaps = 16/167 (9%)

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI------KDAEESR 209
               E ++        ++  +E  +         ++  +     +R+       D     
Sbjct: 112 AEPKEDDLRQFYDAHPDMFRQEARVSFDHVFFSGSRRPDAAAEARRVLAASGGPDQTAII 171

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY 269
            +  +        A K  D        +         + ++         P  +  G   
Sbjct: 172 DQGDQWLAAAGLKAGKESD--------IAAQFGPAFARAVVALPTGEWMGPIESAYGQHL 223

Query: 270 IAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           + + +           +KA + AQ    +   +E  Y  +L     I
Sbjct: 224 VRVYEVVPAAGRPFAEVKAEVLAQWRDEQRRNYERRYFAELLKKYEI 270


>gi|328793049|ref|XP_001120560.2| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4-like, partial [Apis mellifera]
          Length = 127

 Score = 49.3 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 8/87 (9%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             Q +I +A E      K       ++      S G   ++++  +   FQ        +
Sbjct: 42  EKQSKILEALEKLKAGGKFNEVAAIYSED-KARSGGDLGWMIKGSMVGPFQEAAFALPIS 100

Query: 257 TT-------NPYVTQKGVEYIAICDKR 276
           +         P  T+ G   I +  K+
Sbjct: 101 SINSPIYTDPPIKTKFGYHIIMVESKK 127


>gi|326798824|ref|YP_004316643.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingobacterium sp.
           21]
 gi|326549588|gb|ADZ77973.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingobacterium sp.
           21]
          Length = 701

 Score = 49.3 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 45/141 (31%), Gaps = 4/141 (2%)

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
            + K      +      R +L +       ++   +          L+         +F 
Sbjct: 335 ESAKILDVRNSPDSVTARHILLNPATEGGVDKAMAKADSIK--NLILKGGNFAALAVEFG 392

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIA 283
           +     + G+        + P F+N +  ++        TQ GV  I +  ++ +     
Sbjct: 393 TDGTKDNGGELGTFARGSMIPAFENAVFDAKPGDVFVLNTQYGVHIIKVDAQKGMS--KV 450

Query: 284 LKAYLSAQNTPTKIEKHEAEY 304
           +KA +  ++  +  E   A Y
Sbjct: 451 VKAAIIDKSVSSSNETLRAAY 471


>gi|50546849|ref|XP_500894.1| YALI0B14663p [Yarrowia lipolytica]
 gi|49646760|emb|CAG83145.1| YALI0B14663p [Yarrowia lipolytica]
          Length = 185

 Score = 49.3 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 6/92 (6%), Positives = 23/92 (25%), Gaps = 1/92 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R   +   + +   +           + +       +     +        G   +  + 
Sbjct: 91  RPSSWKDANIERTKEEARAILEGHQAKIKAGETTIGDLAVSESDCSSARKRGDLGFFGKG 150

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
           ++  +F+           ++   T  G+  I 
Sbjct: 151 EMQAEFEQASFALENGQVSDIVETASGLHLIE 182


>gi|308496066|ref|XP_003110221.1| hypothetical protein CRE_06423 [Caenorhabditis remanei]
 gi|308245058|gb|EFO89010.1| hypothetical protein CRE_06423 [Caenorhabditis remanei]
          Length = 162

 Score = 49.3 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/116 (8%), Positives = 29/116 (25%), Gaps = 1/116 (0%)

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
              +++       +                I  +K      ++   ++  ++     K  
Sbjct: 44  KGSDLKSVQCLHLLVKHEGSRNPSSWRSDHITRSKEDAINILKNYERELRDASNIEGKFR 103

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
           +  ++F+        G         +   F++          +    T  GV  I 
Sbjct: 104 DLAKQFSDCSSAKRGGDLGPFERRQMQKPFEDASFALEVGEMSPIVDTSSGVHLIY 159


>gi|116308872|emb|CAH66008.1| H0613H07.6 [Oryza sativa Indica Group]
 gi|116317920|emb|CAH65943.1| H0716A07.1 [Oryza sativa Indica Group]
          Length = 123

 Score = 49.3 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 6/65 (9%), Positives = 15/65 (23%), Gaps = 1/65 (1%)

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
           +         +   + +        G         +   F++          ++   T  
Sbjct: 55  QILSGRANFADLAARHSDCSSARRGGDLGTFGRRQMQKPFEDATFALKVGEMSDTVDTDS 114

Query: 266 GVEYI 270
           GV  I
Sbjct: 115 GVHII 119


>gi|38344861|emb|CAE01287.2| OSJNBa0020P07.4 [Oryza sativa Japonica Group]
 gi|125589154|gb|EAZ29504.1| hypothetical protein OsJ_13578 [Oryza sativa Japonica Group]
          Length = 123

 Score = 49.3 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 6/65 (9%), Positives = 15/65 (23%), Gaps = 1/65 (1%)

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQK 265
           +         +   + +        G         +   F++          ++   T  
Sbjct: 55  QILSGRANFADLAARHSDCSSARRGGDLGTFGRRQMQKPFEDATFALKVGEMSDTVDTDS 114

Query: 266 GVEYI 270
           GV  I
Sbjct: 115 GVHII 119


>gi|145520387|ref|XP_001446049.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124413526|emb|CAK78652.1| unnamed protein product [Paramecium tetraurelia]
          Length = 119

 Score = 49.3 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/98 (10%), Positives = 25/98 (25%), Gaps = 1/98 (1%)

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGK 233
             R    R     +  +    +  +++     E +     K   +  +          G 
Sbjct: 18  QSRNPYDRVRDKQVTRSDADAEKGIREIRAQVENNLNLFAKIAQERSEKRQCSSCQKGGD 77

Query: 234 AQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                   +  QF+++         + P  +  G   I
Sbjct: 78  LGDFTRGQMQKQFEDVAFALKVGELSQPVKSDSGWHII 115


>gi|189426095|ref|YP_001953272.1| hypothetical protein Glov_3046 [Geobacter lovleyi SZ]
 gi|189422354|gb|ACD96752.1| conserved hypothetical protein [Geobacter lovleyi SZ]
          Length = 531

 Score = 49.3 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 39/137 (28%), Gaps = 2/137 (1%)

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
            V  ++       +     + K  E  +           +        S G    +  S 
Sbjct: 386 QVRTTVEQQLRALKAAELAKQKAVEAQKQLAGNGAGLKLQATPAFGYNSKGDLPGIGNSK 445

Query: 242 LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEK 299
              +    L  +    + P +       + +  +           K  +  Q  P K E+
Sbjct: 446 PLMEKVFELTTAGATPSEPMLVGNRWYAVRLKQRNAAPQADFAPRKDEVKRQLLPAKQEE 505

Query: 300 HEAEYVKKLRSNAIIHY 316
               ++K+LRS A I Y
Sbjct: 506 ALRAWLKELRSKAKIVY 522



 Score = 45.1 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/199 (11%), Positives = 53/199 (26%), Gaps = 23/199 (11%)

Query: 1   MTSKVFTS-----LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD 55
           M   +        +     ++   F+  IF +      +    S+     ++   I+   
Sbjct: 1   MLDVIRKKKESVVIKAVFVIIVLSFIGTIFLVWGKGD-EGMGRSAGYAAKVDRTTISLEA 59

Query: 56  ISKRIA-------------LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
                                   +    L + A+  LI  TL  +  +  G++     +
Sbjct: 60  YQNAYQNMAETYRQIFGANFTPELEKQLNLRQQAIDRLIDSTLIIKAAKSQGVSVSKEEI 119

Query: 103 NYFFVQH---ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
           +          +N       +   L    I  + F++    + +     +   M K    
Sbjct: 120 SAAIAGMSAFQQNGSFDFGLYQQMLKANRITPDAFEESKKRELLIEKT-RKAVMDKVVIS 178

Query: 160 EMEIPANKQKMKNITVREY 178
           + E      K ++     Y
Sbjct: 179 DDEALKQFHKEQDKLELSY 197


>gi|313608785|gb|EFR84595.1| foldase protein PrsA [Listeria monocytogenes FSL F2-208]
          Length = 126

 Score = 49.3 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 30/96 (31%), Gaps = 3/96 (3%)

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
                 + G        ++   F+      +++++ +    +  G   I +  K + G  
Sbjct: 5   DTATSTNGGLLDPFGPGEMDETFEKAAYALENKDDVSGIVKSTYGYHLIQLVKKTEKGTY 64

Query: 282 IALKAYLS-AQNTPTKIEKHEAEYVKKLRSNAIIHY 316
              KA +  A        ++    +KK    A I  
Sbjct: 65  AKEKANVKAAYIESQLTTENMTAALKKELKAANIDI 100


>gi|307319050|ref|ZP_07598480.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|306895157|gb|EFN25913.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
          Length = 289

 Score = 49.3 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/201 (7%), Positives = 45/201 (22%), Gaps = 6/201 (2%)

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            E   +   K+   D          +     +  D        E E+    +  ++    
Sbjct: 73  NERLMAREAKEMGLDQDDTVIRRRLAQKLRFIVEDTAQLAEPTEAELRQLYEANRSRFET 132

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
              +             +     K +     +        ++L           +  +  
Sbjct: 133 PGRLSFKQIYFDPEHRADAAAEAKTVLTELNALGESEPASDRLLLGNRFDDASELAISGM 192

Query: 237 LLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTP 294
                    F             P  +  G+  + +  +          +K  + A+   
Sbjct: 193 FGADFAREVFAV----EPGQWRGPVKSGYGLHLVFVMQRTATTPKPFETVKGDVLAEWRR 248

Query: 295 TKIEKHEAEYVKKLRSNAIIH 315
            K  +   +++  LR    + 
Sbjct: 249 LKQTELSRDFLAALRKKYGVE 269


>gi|156083549|ref|XP_001609258.1| peptidyl-prolyl cis-trans isomerase [Babesia bovis T2Bo]
 gi|154796509|gb|EDO05690.1| peptidyl-prolyl cis-trans isomerase, putative [Babesia bovis]
          Length = 187

 Score = 49.3 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/121 (9%), Positives = 31/121 (25%), Gaps = 1/121 (0%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
           F +   +    +      +K+   R  + R     +  +K +    V+        +  R
Sbjct: 64  FEMAMDHGPSTVRCAHILLKHTGSRNPINRNTNQRVTRSKEEAISMVRDYRNTIMSAPER 123

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
             +        +        G   +     +   F N          ++   +  G+  I
Sbjct: 124 DREFRRIATSISECSSASKGGDLGFFSREQMQASFSNAAFNLQVGEISDLVDSDSGIHII 183

Query: 271 A 271
            
Sbjct: 184 Y 184


>gi|239501895|ref|ZP_04661205.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii AB900]
          Length = 621

 Score = 49.3 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 57/233 (24%), Gaps = 7/233 (3%)

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
            L+ +    Q           +  +     +      S ++ + + +K            
Sbjct: 168 SLVSKVDLMQIANLQTEQRTLHLASIKLDPYKAGLTASNQEATDYYNKHQNEFKQPASVD 227

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
               +    +             +  A   + +    +    R V   +     ++    
Sbjct: 228 VDYVVLSPSLMAKPAPATDAELKQAYAKFVETQQKDAK----RIVKHILITTDARDDAAA 283

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNN 256
           QK  KD                +F+         G  +          F + +L      
Sbjct: 284 QKLAKDVYAKIQGGLSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSLKNGQ 343

Query: 257 TTNPYVTQKGVEYIAIC-DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
            + P  TQ G   I        +    A K  L A+    K+    ++ V  L
Sbjct: 344 ISQPVKTQYGYHIIEAETQANQIPSFEAEKPLLIAEVEKNKVASVYSDTVNSL 396



 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/319 (10%), Positives = 83/319 (26%), Gaps = 23/319 (7%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
                T +  ++  +     L    +V I  Y +    + +  T+NG+ I+  D+     
Sbjct: 1   MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQ 60

Query: 62  LLKLQK-----------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQ 108
             K Q                ++  A+  L+   L  Q+ EK GI+     +        
Sbjct: 61  RYKEQYLAAVKGDESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQQP 120

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
             +  G  ++       +     +        Q     ++ + F       ++++     
Sbjct: 121 SLQENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTSTFADYSLVSKVDL-MQIA 179

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
            ++      +L    L         +           +    +           +  +  
Sbjct: 180 NLQTEQRTLHLASIKLDPYKAGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSLMA 239

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
                     +++L   +   ++  Q +             +   D RD      L   +
Sbjct: 240 KPA----PATDAELKQAYAKFVETQQKDAKRIVK-----HILITTDARDDAAAQKLAKDV 290

Query: 289 SAQNTPTKIEKHEAEYVKK 307
            A+          A    +
Sbjct: 291 YAKIQGGLSFAQAAAQFSE 309


>gi|222629721|gb|EEE61853.1| hypothetical protein OsJ_16521 [Oryza sativa Japonica Group]
          Length = 200

 Score = 49.3 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 8/76 (10%), Positives = 17/76 (22%), Gaps = 1/76 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
                     E+      K  +   + +        G         +   F+  +     
Sbjct: 121 DAADLARALREKIVAGERKFEDVATEESDCNSAKRGGDLGPFERGKMQKAFEKAVLALKV 180

Query: 255 NNTTNPYVTQKGVEYI 270
              ++   T  GV  I
Sbjct: 181 GEISDVVDTDSGVHII 196


>gi|218195767|gb|EEC78194.1| hypothetical protein OsI_17801 [Oryza sativa Indica Group]
          Length = 106

 Score = 49.3 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 8/76 (10%), Positives = 17/76 (22%), Gaps = 1/76 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
                     E+      K  +   + +        G         +   F+  +     
Sbjct: 27  DAADLARALREKIVAGERKFEDVATEESDCNSAKRGGDLGPFERGKMQKAFEKAVLALKV 86

Query: 255 NNTTNPYVTQKGVEYI 270
              ++   T  GV  I
Sbjct: 87  GEISDVVDTDSGVHII 102


>gi|217976694|ref|YP_002360841.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocella
           silvestris BL2]
 gi|217502070|gb|ACK49479.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocella
           silvestris BL2]
          Length = 636

 Score = 49.3 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/202 (11%), Positives = 60/202 (29%), Gaps = 18/202 (8%)

Query: 1   MTSKVFTSLSDFIKL----LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVIT---- 52
           M   +  +   +I      +   F+++ F +  I        +++    +  E IT    
Sbjct: 1   MLDAMRAATKGWIGRTVMGIVLGFIILSFAVWGIGDIFRGFGANK-LAEVGNEQITTEAF 59

Query: 53  ----DGDISKRIALLKLQKINGE-----LEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
                 ++ +     +    N E     L++  +  L+ E +  QE    G+      + 
Sbjct: 60  RFAYQTELQRAQRQARRAITNDEAKRFGLDRQVLSRLVSEAVLDQETHALGLAMSDAEIA 119

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
                     G S +   +  ++    +   ++    +     + +         L++  
Sbjct: 120 RTIAADPSFKGASGQFDRARFEELLRDNGLTEKAFVREQRGVYLRQELIDSMTNGLQLPK 179

Query: 164 PANKQKMKNITVREYLIRTVLF 185
              +   +  T    L   VL 
Sbjct: 180 AMLELIHRYQTETRTLDYFVLP 201



 Score = 43.9 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 20/249 (8%), Positives = 60/249 (24%), Gaps = 20/249 (8%)

Query: 72  LEKIAVQELIV--ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
           L +  +  +    +  K           ++ T++YF +  A    ++             
Sbjct: 163 LRQELIDSMTNGLQLPKAMLELIHRYQTETRTLDYFVLPAAAAGTIALPSDDELGKYFED 222

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
               +        +   +            + +      ++K         R +      
Sbjct: 223 RKLGYSAPEYRTLVTLTLTPESIAKPDAVSDADALRRYDEIKGEKYGAPEKRQIDQLFFS 282

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
           +        +K           L    +  +  A +   +       +    L  +    
Sbjct: 283 DPAAAAAAREK-----------LDAGASFEDIVAQQGSTMKDVSLGLVTRGQLIDKAVAD 331

Query: 250 LKKSQNN--TTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIE---KHEA 302
           +  +      + P  TQ G   I +             +K  +  +   T+         
Sbjct: 332 VAFALPESAVSAPVKTQFGSVLIRVAAIEPSSAKPFEDVKEEIKREIATTRARGEIARLH 391

Query: 303 EYVKKLRSN 311
           + ++  R++
Sbjct: 392 DAIEDQRAS 400


>gi|50285435|ref|XP_445146.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524449|emb|CAG58046.1| unnamed protein product [Candida glabrata]
          Length = 173

 Score = 48.9 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 11/124 (8%), Positives = 34/124 (27%), Gaps = 2/124 (1%)

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
             F+    +  + +      +K+   R              +   +   + + +  E+  
Sbjct: 47  EQFISYLKDHPLRVRCLHILIKHKDSRRPASHRQEKITITKEEAIKELKEIQARLEEDQE 106

Query: 210 LRLPKDCNK-LEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGV 267
            +         ++ +        G   Y    ++ P F+        +  ++   +  GV
Sbjct: 107 QKKKHSFEAIAKERSDCSSFKRGGDLGYFGRGEMQPSFEKAAFALKIDEVSDIVESDSGV 166

Query: 268 EYIA 271
             I 
Sbjct: 167 HLIK 170


>gi|167033795|ref|YP_001669026.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           GB-1]
 gi|166860283|gb|ABY98690.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           GB-1]
          Length = 91

 Score = 48.9 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 6/76 (7%), Positives = 18/76 (23%), Gaps = 1/76 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
                 +  ++            +KF+        G    +    +      ++ K    
Sbjct: 11  KTADEAEKLKQRIANGEAFDVLAKKFSLCPSGKRGGDLGEVRPGQMVGAIDQVIFKKPLR 70

Query: 257 TT-NPYVTQKGVEYIA 271
               P  ++ G   + 
Sbjct: 71  VVHGPIKSKFGYHLVQ 86


>gi|75910422|ref|YP_324718.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anabaena variabilis
           ATCC 29413]
 gi|75704147|gb|ABA23823.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anabaena variabilis
           ATCC 29413]
          Length = 252

 Score = 48.9 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 28/264 (10%), Positives = 70/264 (26%), Gaps = 28/264 (10%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           I+   I+   I + +  L+     G+     +++ ++E   +    +  +  +       
Sbjct: 9   IDDRPIS---IEQTVKYLQSSGKLGQFISDVLRQYVIEQEIQ---GRDDVEINPALTEQT 62

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
            +       L+              D                    F  K   L+  +  
Sbjct: 63  VIDFRLKNQLADPQAFQDWLTNNGTDYARFHASIT-----------FNFKLEKLKTLVTE 111

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
            K     I  + +L R V+  I  +  +    +Q +I +               ++++  
Sbjct: 112 AKLPEYFIEQKIFLDRVVISRIVVDSRELAEELQLQIAE-------GGSFEQLAKEYSVL 164

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL 284
              +  G    +    +  + +  +   +      P           +        +   
Sbjct: 165 DDRLVNGMMGPISRGTMPDKLRAAIDVATPGQLVGPIEIDGRYGLFRVEQFLPASLDDI- 223

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKL 308
              L         EK  AE ++KL
Sbjct: 224 --QLKQALQNELFEKWLAEKIQKL 245


>gi|170585658|ref|XP_001897599.1| parvulin-type peptidyl-prolyl cis-trans isomerase, Bm parvulin
           [Brugia malayi]
 gi|158594906|gb|EDP33483.1| parvulin-type peptidyl-prolyl cis-trans isomerase, Bm parvulin
           [Brugia malayi]
          Length = 95

 Score = 48.9 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 7/52 (13%)

Query: 232 GKAQYLLESDLHPQFQNLLKKSQNNTT-------NPYVTQKGVEYIAICDKR 276
           G   ++    +   FQ+      N+T         P  TQ G   I +  K+
Sbjct: 44  GDLGWMTRGSMVGTFQDAAFALPNSTVDRPVYTDPPVRTQFGYHIIMVEAKK 95


>gi|126642856|ref|YP_001085840.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
           baumannii ATCC 17978]
          Length = 101

 Score = 48.9 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 6/68 (8%), Positives = 22/68 (32%), Gaps = 1/68 (1%)

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT-TNPYVTQ 264
           ++            +++++       G+   + +  L P    ++  +       P  +Q
Sbjct: 26  KKKLQSGADFAKLAKQYSTCNSAKRGGELGEVKKGQLVPVIDKVVFTAAERVLQGPIKSQ 85

Query: 265 KGVEYIAI 272
            G   + +
Sbjct: 86  FGYHLLEV 93


>gi|189461626|ref|ZP_03010411.1| hypothetical protein BACCOP_02285 [Bacteroides coprocola DSM 17136]
 gi|189431656|gb|EDV00641.1| hypothetical protein BACCOP_02285 [Bacteroides coprocola DSM 17136]
          Length = 453

 Score = 48.9 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/300 (10%), Positives = 78/300 (26%), Gaps = 43/300 (14%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           ++     L+      I  +   A  S I   I G+ +   +           K   E   
Sbjct: 1   MIKLIRQLLWLSWPFIPCFSFAAERSDILLRIGGQTVAKQEFEFYCKHSLAGKCQTESVN 60

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
            A  + +   LK  ++ +SG                                       +
Sbjct: 61  EAFDDFLFRKLKAADMRQSGCDT------------------------------LPAFRQY 90

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
            + +  + +   ++  +   +           +   +        I  +   +  +  + 
Sbjct: 91  CKVMRGELLKNVLLDKEQEERI----CRDLYRQTVERLSKSGWVKIEQITILLSQHAPKA 146

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ 254
                +   D+  ++L+   D             + + +        L      L   S+
Sbjct: 147 DERAARNRMDSIYAKLKSGADFTSFSCQPEGGTWIPVVEL-------LQEFADRLASLSK 199

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE--KHEAEYVKKLRSNA 312
           N  + P+ +  GV  I + D +        + YL A       +    + +   + R  A
Sbjct: 200 NEFSEPFFSPLGVHIIRLTDTKPCISYEEARPYLLAYMERLGADHPALKHDLFTQWREGA 259


>gi|171189871|gb|ACB42272.1| putative peptidylprolyl isomerase [Francisella tularensis subsp.
           holarctica]
          Length = 47

 Score = 48.9 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 1/46 (2%)

Query: 231 IGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDK 275
            G      +  + P+F + +     +    P  TQ G   + I  +
Sbjct: 1   GGDLGTFSQGQMVPEFDRVVFNVELHKVHGPVQTQFGYHLLEITSR 46


>gi|322705885|gb|EFY97468.1| peptidyl-prolyl cis/trans isomerase [Metarhizium anisopliae ARSEF
           23]
          Length = 228

 Score = 48.9 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/92 (8%), Positives = 22/92 (23%), Gaps = 1/92 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R   +   +        ++       + +       +     +        G   Y    
Sbjct: 134 RPSSWRESEITRSKDDAMEIIKAHEAKIKSGAISLGDLAPTESDCSSARKRGDLGYFGRG 193

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
           D+  +F++          +    T  G+  I 
Sbjct: 194 DMQKEFEDAAFALKPGEMSGVVETASGLHLIE 225


>gi|218533006|ref|YP_002423822.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           chloromethanicum CM4]
 gi|218525309|gb|ACK85894.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           chloromethanicum CM4]
          Length = 634

 Score = 48.9 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 50/166 (30%), Gaps = 18/166 (10%)

Query: 1   MTSKVFTSLSDFI-KLLTTYFVLIIFCIVPIVSYKSW--AMSSRIRTTINGEVITDGDIS 57
           M   + ++   ++ K++ +     +   V I   + +    SS    T+    I+  ++ 
Sbjct: 1   MLQSIRSASQHWLGKVVLSVIFTFLIAGVAIFGVEEFFRGGSSTAVATVGKTPISAEEVR 60

Query: 58  KRIALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
                   +                  LE+  + +LI E    Q+    G+     TV  
Sbjct: 61  TAYQNQLQRYQAQLKRTLTPDQARAMGLERQVLAQLITEAALDQKTTDLGLAVSDATVLR 120

Query: 105 FFV--QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
                   +N   S +    F   Q  G N        +S+   + 
Sbjct: 121 AIQDEPSFKNANGSFDRALFFQTLQRAGLNEAMFVREQRSVIARLQ 166



 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/89 (7%), Positives = 26/89 (29%), Gaps = 8/89 (8%)

Query: 233 KAQYLLESDL--HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYL 288
               + +++L             Q   + P   + G   + +       +     +K  +
Sbjct: 315 DLGTMTKAELFDPAVGNAAFALEQGKVSEPVKGRFGTVLLRVTAIEPGTVKPFDEVKDEI 374

Query: 289 SAQNTPTKIE----KHEAEYVKKLRSNAI 313
             +    ++         + ++  R++A 
Sbjct: 375 RKEIALKRVRDGGFDKVQDAIEDARASAK 403


>gi|163854063|ref|YP_001642106.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           extorquens PA1]
 gi|163665668|gb|ABY33035.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           extorquens PA1]
          Length = 634

 Score = 48.9 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 50/166 (30%), Gaps = 18/166 (10%)

Query: 1   MTSKVFTSLSDFI-KLLTTYFVLIIFCIVPIVSYKSW--AMSSRIRTTINGEVITDGDIS 57
           M   + ++   ++ K++ +     +   V I   + +    SS    T+    I+  ++ 
Sbjct: 1   MLQSIRSASQHWLGKVVLSVIFTFLIAGVAIFGVEEFFRGGSSTAVATVGKTPISAEEVR 60

Query: 58  KRIALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
                   +                  LE+  + +LI E    Q+    G+     TV  
Sbjct: 61  TAYQNQLQRYQAQLKRTLTPDQARAMGLERQVLAQLITEAALDQKTTDLGLAVSDATVLR 120

Query: 105 FFV--QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
                   +N   S +    F   Q  G N        +S+   + 
Sbjct: 121 AIQDEPSFKNANGSFDRALFFQTLQRAGLNEAMFVREQRSVIARLQ 166



 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/89 (7%), Positives = 26/89 (29%), Gaps = 8/89 (8%)

Query: 233 KAQYLLESDL--HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYL 288
               + +++L             Q   + P   + G   + +       +     +K  +
Sbjct: 315 DLGTMTKAELFDPAVGNAAFALEQGKVSEPVKGRFGTVLLRVTAIEPGTVKPFDEVKDEI 374

Query: 289 SAQNTPTKIE----KHEAEYVKKLRSNAI 313
             +    ++         + ++  R++A 
Sbjct: 375 RKEIALKRVRDGGFDKVQDAIEDARASAK 403


>gi|213581234|ref|ZP_03363060.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 203

 Score = 48.9 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 71/196 (36%), Gaps = 8/196 (4%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  +
Sbjct: 67  RHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANIAKQNNMTMDQMRSRLAYDGLNYS 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + I  +V  N+   +   L  E+ A  +++         +      I   + 
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDASTELNLSHILIALPEN 186

Query: 193 QNQGFVQKRIKDAEES 208
                V    + AE  
Sbjct: 187 PTSEQVNDAQRQAESI 202


>gi|330721567|gb|EGG99598.1| Peptidyl-prolyl cis-trans isomerase ppiC [gamma proteobacterium
           IMCC2047]
          Length = 92

 Score = 48.9 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/76 (10%), Positives = 19/76 (25%), Gaps = 1/76 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN- 255
             ++  +  ++            +K +        G         +     N++ K    
Sbjct: 12  KTKEEAEAIKKKLAGGADFATLAKKHSLCNSAKRGGDLGEFGPGKMIKAVDNVVFKKPVL 71

Query: 256 NTTNPYVTQKGVEYIA 271
               P  T+ G   I 
Sbjct: 72  KVHGPIKTKFGYHLIE 87


>gi|119496701|ref|XP_001265124.1| peptidyl-prolyl cis-trans isomerase [Neosartorya fischeri NRRL 181]
 gi|119413286|gb|EAW23227.1| peptidyl-prolyl cis-trans isomerase [Neosartorya fischeri NRRL 181]
          Length = 129

 Score = 48.9 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 28/85 (32%), Gaps = 6/85 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               + ++A E      K  +   +++        G   + +   L+  F+    + + +
Sbjct: 46  EKFSKKEEAVEKLRNGAKFDDVAREYSED-KARQGGSLGWKVRGSLNADFEKAAYELEPS 104

Query: 257 TTNP-----YVTQKGVEYIAICDKR 276
           TT         T  G   I +  ++
Sbjct: 105 TTANPKYVEVKTGFGYHIIMVEGRK 129


>gi|70990890|ref|XP_750294.1| peptidyl-prolyl cis-trans isomerase [Aspergillus fumigatus Af293]
 gi|74669729|sp|Q4WJM6|PIN4_ASPFU RecName: Full=Peptidyl-prolyl cis-trans isomerase pin4;
           Short=PPIase pin4; AltName: Full=Parvulin-14;
           Short=Par14
 gi|66847926|gb|EAL88256.1| peptidyl-prolyl cis-trans isomerase [Aspergillus fumigatus Af293]
 gi|159130767|gb|EDP55880.1| peptidyl-prolyl cis-trans isomerase [Aspergillus fumigatus A1163]
          Length = 129

 Score = 48.9 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 28/85 (32%), Gaps = 6/85 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               + ++A E      K  +   +++        G   + +   L+  F+    + + +
Sbjct: 46  EKFSKKEEALEKLRNGAKFDDVAREYSED-KARQGGSLGWKVRGSLNADFEKAAYELEPS 104

Query: 257 TTNP-----YVTQKGVEYIAICDKR 276
           TT         T  G   I +  ++
Sbjct: 105 TTANPKYVEVKTGFGYHIIMVEGRK 129


>gi|46124309|ref|XP_386708.1| hypothetical protein FG06532.1 [Gibberella zeae PH-1]
          Length = 177

 Score = 48.9 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/92 (9%), Positives = 24/92 (26%), Gaps = 1/92 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R   +   +     +   +   +  ++ +             +        G   Y    
Sbjct: 83  RPSSWREAEITRTKEEAFEIIKEHEQKIKSGSVSLGELALTESDCSSARKRGDLGYFGRG 142

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
           D+  +F++     S    +    T  G+  I 
Sbjct: 143 DMQKEFEDASFGLSPGQMSEIVETASGLHLIE 174


>gi|164425892|ref|XP_963036.2| peptidyl-prolyl cis-trans isomerase ssp-1 [Neurospora crassa OR74A]
 gi|189046952|sp|O60045|SSP1_NEUCR RecName: Full=Peptidyl-prolyl cis-trans isomerase ssp-1;
           Short=PPIase ssp-1
 gi|157071110|gb|EAA33800.2| peptidyl-prolyl cis-trans isomerase ssp-1 [Neurospora crassa OR74A]
          Length = 182

 Score = 48.9 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/170 (6%), Positives = 33/170 (19%), Gaps = 1/170 (0%)

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
              +      +      F+S                 ++             +    + +
Sbjct: 10  PEDWEVRHSQSKNLPYYFNSATKTSRWEPPSGTDVDKLKIYMAKYHSPTSQQQQQQQQQQ 69

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                +    +       R   +   +     Q  +       +  +             
Sbjct: 70  PQGKIRCAHLLVKHNQSRRPSSWRESEITRTKQEALTTLQGFEQRIKSGSISLGELALTE 129

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
           +        G   Y    D+  +F++          +    T  G+  I 
Sbjct: 130 SDCSSARKRGDLGYFGRGDMQKEFEDAAFALKPGEISGIVDTASGLHLIE 179


>gi|327307516|ref|XP_003238449.1| peptidyl-prolyl cis-trans isomerase [Trichophyton rubrum CBS
           118892]
 gi|326458705|gb|EGD84158.1| peptidyl-prolyl cis-trans isomerase [Trichophyton rubrum CBS
           118892]
          Length = 132

 Score = 48.9 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 6/85 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               + ++A E      K      +F+        G   + +   L   F+    + + +
Sbjct: 49  EKHSKKEEALEKLRAGVKFDEVAREFSED-KARQGGSLGWKVRGSLDAAFEKAAYELEPS 107

Query: 257 TTNP-----YVTQKGVEYIAICDKR 276
           TT         T  G   I +  ++
Sbjct: 108 TTGSPKYVEVKTGFGYHIIMVEGRK 132


>gi|317157350|ref|XP_001826421.2| peptidyl-prolyl cis-trans isomerase ssp-1 [Aspergillus oryzae
           RIB40]
          Length = 177

 Score = 48.9 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 7/109 (6%), Positives = 24/109 (22%), Gaps = 1/109 (0%)

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
               +    +   +   R   +   +     +  ++                 +     +
Sbjct: 66  EGKIRCSHLLVKHKDSRRPSSWKESEITRSKEEAIEILRGHETRINSGEVSLGDLAMSES 125

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                   G   +    ++  +F++          +    T  GV  I 
Sbjct: 126 DCSSARKKGDLGFFGRGEMQKEFEDAAFALQPGQVSGIVDTASGVHLIE 174


>gi|294507825|ref|YP_003571883.1| conserved hypothetical protein, secreted [Salinibacter ruber M8]
 gi|294344153|emb|CBH24931.1| conserved hypothetical protein, secreted [Salinibacter ruber M8]
          Length = 289

 Score = 48.9 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/290 (10%), Positives = 73/290 (25%), Gaps = 33/290 (11%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKK 87
             +   ++ A        +    +T  D+ + +A +   + + E  K A+ + +  TL  
Sbjct: 21  AGLAGCQTEAPPDSYVARVGTHYLTGADLDRMLAGMGPVRDSTEARKQAIDQWVTRTLLY 80

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           +E E+  ++ +         Q       +                  + Y         +
Sbjct: 81  REAERLNLSSNDEVQQRLRRQRRAVLVSALRTRLEEEADVRPTPEKVRTYFERHKEQLRL 140

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
            +    ++                         R  L + P         +         
Sbjct: 141 REPYVRVQ------------YLAAPDRPTAQTARQALRTPPAPPDTTWARLVAEY----- 183

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGV 267
                  D  +  + + +    S       L   +      L    +  TT         
Sbjct: 184 -----ATDTTRARRLSRRFVPQS------RLGQQVPALADRLADLQEGETTPVVQASGRY 232

Query: 268 EYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAE----YVKKLRSNAI 313
             + + D+R   G      ++  +       +   +     V++LR+ A 
Sbjct: 233 HVLRL-DRRLPEGTPPELDWVEPKIRRRLRIRARKQIHATEVQRLRNRAQ 281


>gi|83775165|dbj|BAE65288.1| unnamed protein product [Aspergillus oryzae]
          Length = 262

 Score = 48.9 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 7/109 (6%), Positives = 24/109 (22%), Gaps = 1/109 (0%)

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
               +    +   +   R   +   +     +  ++                 +     +
Sbjct: 151 EGKIRCSHLLVKHKDSRRPSSWKESEITRSKEEAIEILRGHETRINSGEVSLGDLAMSES 210

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                   G   +    ++  +F++          +    T  GV  I 
Sbjct: 211 DCSSARKKGDLGFFGRGEMQKEFEDAAFALQPGQVSGIVDTASGVHLIE 259


>gi|310791533|gb|EFQ27060.1| ppic-type ppiase domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 146

 Score = 48.9 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 6/81 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               + ++A        K      +F+        G   +  +  L P+F+++      +
Sbjct: 50  EKHAKKEEALAKLRDGTKFDEVAREFSED-KARQGGSLGWKTKGSLDPKFEDVAFALSTS 108

Query: 257 TTN-PY----VTQKGVEYIAI 272
           TT  P      T+ G   I +
Sbjct: 109 TTASPVYGEAKTEFGYHIIMV 129


>gi|126658177|ref|ZP_01729328.1| hypothetical protein CY0110_11602 [Cyanothece sp. CCY0110]
 gi|126620548|gb|EAZ91266.1| hypothetical protein CY0110_11602 [Cyanothece sp. CCY0110]
          Length = 257

 Score = 48.9 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/252 (10%), Positives = 73/252 (28%), Gaps = 21/252 (8%)

Query: 52  TDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
           T  D+ + I  LK      E+ +  +Q+ I+E       ++     +             
Sbjct: 6   TLIDVEEVIDYLKKNLKFKEICQQILQQRIIEQA---SQQRDLTITEEEIQAEADNIRRE 62

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
                A D  ++L+ + I  + ++  +    +   + +N F  +      +   N  ++ 
Sbjct: 63  KRLEKAVDTLAWLNGELITPDDWEAGIQDTLLRKKLAQNLFDKEVEKTFQQSWFNFDQVL 122

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
              +     +  L      + +   F Q       + + RL                   
Sbjct: 123 LYQIIVPYEKLALEIFYQIEEEEMSFYQAAHLYDIDEKRRL-----------------QC 165

Query: 232 GKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA 290
           G    +   ++ P+   ++   +      P+ T++G   I +           +   +  
Sbjct: 166 GYEGKVYRFNMKPELSPVIFAANPGEVIPPFKTEQGYHIIMVERFIKAQLTEEIYEQIIN 225

Query: 291 QNTPTKIEKHEA 302
           +     +     
Sbjct: 226 KMFDQWLSSELN 237


>gi|161528450|ref|YP_001582276.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosopumilus
           maritimus SCM1]
 gi|160339751|gb|ABX12838.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosopumilus
           maritimus SCM1]
          Length = 92

 Score = 48.9 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 19/67 (28%), Gaps = 2/67 (2%)

Query: 207 ESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQ 264
           E      K     ++ +         G   Y  +  +   F++   K      + P  ++
Sbjct: 23  EKLKSGEKFGKLAKELSIDSGSAKKNGNLGYFTKGMMVKPFEDAAFKLQVGEVSEPIKSE 82

Query: 265 KGVEYIA 271
            G   I 
Sbjct: 83  FGYHIIK 89


>gi|17229105|ref|NP_485653.1| hypothetical protein alr1613 [Nostoc sp. PCC 7120]
 gi|17135433|dbj|BAB77979.1| alr1613 [Nostoc sp. PCC 7120]
          Length = 252

 Score = 48.9 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/264 (10%), Positives = 70/264 (26%), Gaps = 28/264 (10%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           I+   I+   I + +  L+     G+     +++ ++E   +    +  +  +       
Sbjct: 9   IDDRPIS---IEQTVKYLQSSGKLGQFISDVLRQYVIEQEIQ---GRDDVEINPALTEQT 62

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
            +       L+              D                    F  K   L+  +  
Sbjct: 63  VIDFRLKNQLADPQAFQDWLTNNGTDYARFHASIT-----------FNFKLEKLKTLVTE 111

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
            K     I  + +L R V+  I  +  +    +Q +I +               ++++  
Sbjct: 112 AKLPEYFIEQKIFLDRVVISRIVVDSRELAEELQLQIAE-------GGSFEQLAKEYSIL 164

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL 284
              +  G    +    +  + +  +   +      P           +        +   
Sbjct: 165 DDRLVNGMMGPISRGTMPDKLRAAIDVATPGQLVGPIEIDGRYGLFRVEQFLPASLDDI- 223

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKL 308
              L         EK  AE ++KL
Sbjct: 224 --QLKQALQNELFEKWLAEKIQKL 245


>gi|161507900|ref|YP_001577864.1| peptidylprolyl isomerase [Lactobacillus helveticus DPC 4571]
 gi|160348889|gb|ABX27563.1| PrtM precursor protein [Lactobacillus helveticus DPC 4571]
          Length = 300

 Score = 48.9 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/285 (9%), Positives = 73/285 (25%), Gaps = 33/285 (11%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIE 91
           +  S + ++    +  G  IT       +          +  K A+  +I+    +Q+  
Sbjct: 22  AACSNSGNNATVASYKGGKITQQQYYDEMK-------KSQAGKSALANMIINRALEQQYG 74

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
           K   +   +     + +   +   +    +                   Q++  +++   
Sbjct: 75  KYVSSKKVDKKYSNYKKQYGSQFSAVLQQNGMTASTF-----------KQNLKTNLLSEA 123

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
            +     +  +      K     V           +           Q +   + +S  +
Sbjct: 124 ALKHINKISKKQEQQAWKNYQPKVT-----VQHILVAKKSTAESIIKQLKDGKSFKSLAK 178

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEY 269
                   +  A K+             + L   F+    K      T  P  +Q G   
Sbjct: 179 KYSLDTATKNKAGKLPAFDSTD------NTLDSAFKTAAFKLKTGEVTESPVKSQSGYHV 232

Query: 270 IAICDKRDLGGEIALKAYLSAQNTPTKIEKHE--AEYVKKLRSNA 312
           I +      G     K  +  +   +  +      + +  +  NA
Sbjct: 233 IKMISHPAKGKFADHKKAIDDEIYASMAQDQAVMKDVIATVLKNA 277


>gi|112148583|gb|ABI13576.1| protease maturation protein precursor [Lactobacillus helveticus
           CNRZ32]
 gi|328464668|gb|EGF36014.1| peptidylprolyl isomerase [Lactobacillus helveticus MTCC 5463]
          Length = 300

 Score = 48.9 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/285 (9%), Positives = 73/285 (25%), Gaps = 33/285 (11%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIE 91
           +  S + ++    +  G  IT       +          +  K A+  +I+    +Q+  
Sbjct: 22  AACSNSGNNATVASYKGGKITQQQYYDEMK-------KSQAGKSALANMIINRALEQQYG 74

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
           K   +   +     + +   +   +    +                   Q++  +++   
Sbjct: 75  KYVSSKKVDKKYSNYKKQYGSQFSAVLQQNGMTASTF-----------KQNLKTNLLSEA 123

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
            +     +  +      K     V           +           Q +   + +S  +
Sbjct: 124 ALKHINKISKKQEQQAWKNYQPKVT-----VQHILVAKKSTAESIIKQLKDGKSFKSLAK 178

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEY 269
                   +  A K+             + L   F+    K      T  P  +Q G   
Sbjct: 179 KYSLDTATKNKAGKLPAFDSTD------NTLDSAFKTAAFKLKTGEVTESPVKSQSGYHV 232

Query: 270 IAICDKRDLGGEIALKAYLSAQNTPTKIEKHE--AEYVKKLRSNA 312
           I +      G     K  +  +   +  +      + +  +  NA
Sbjct: 233 IKMISHPAKGKFADHKKAIDDEIYASMAQDQAVMKDVIATVLKNA 277


>gi|119597662|gb|EAW77256.1| hCG1789710 [Homo sapiens]
          Length = 131

 Score = 48.9 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 26/83 (31%), Gaps = 8/83 (9%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT--- 257
           +I +A E      +      +++        G   ++    +   FQ        +    
Sbjct: 50  KIMEAMEKLKSGMRFNEVATQYSED-KARQGGVLGWMTRGSMVGPFQEAAFALPISVMDK 108

Query: 258 ---TNP-YVTQKGVEYIAICDKR 276
              T+P   T+ G   I +  ++
Sbjct: 109 PVFTDPAVKTKFGYHIIMVEGRK 131


>gi|194290267|ref|YP_002006174.1| peptidylprolyl isomerase [Cupriavidus taiwanensis LMG 19424]
 gi|193224102|emb|CAQ70111.1| putative Peptidylprolyl isomerase [Cupriavidus taiwanensis LMG
           19424]
          Length = 250

 Score = 48.9 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/270 (10%), Positives = 68/270 (25%), Gaps = 26/270 (9%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              I+ EV+    + + + LLKL      L    V++++ + L     ++ G+       
Sbjct: 4   IVRIDDEVLG---VEEFVRLLKLTGQFEGL----VEQIVRDKLTVHAAKRQGMVVTPE-- 54

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                + A           +      +   +         I   + +   M +    E  
Sbjct: 55  --EIQERADQFRRVQGLHRAADMNHYLDALNVSLDEFEAFITDSLYQERMMAQV-CSEAA 111

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +               +   V+ S             K  +     +           + 
Sbjct: 112 VQEYFALNSPRFDSIEVSHIVVDSEG-----------KARELISYLQDDPEAFAEMAREH 160

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQ-NLLKKSQNNTTNPYVTQKG--VEYIAICDKRDLG 279
           +        G+   +L   L  + +  +      +   P+        E   +  K    
Sbjct: 161 SIADTRERGGEIGKVLRGSLKTEIEAKVFNAEPGDLLGPFPAADRSFFEVFLVRAKHPAT 220

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
            +  +   +        +     E+V + R
Sbjct: 221 LDSEVAVEVRRLLREDWLMARAQEHVIEAR 250


>gi|182678431|ref|YP_001832577.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182634314|gb|ACB95088.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 640

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/192 (8%), Positives = 49/192 (25%), Gaps = 21/192 (10%)

Query: 1   MTSKVFTSLSDFIKL----LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI 56
           M   +  +   +I      L    +++ F I  +        ++     +    IT    
Sbjct: 1   MLEAMRVATRGWIGRSLMTLVMGLIILSFIIWGVGDMFRNLGANT-LAKVGDTEITTQAY 59

Query: 57  SKRIALLKLQKINGE-------------LEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            +  + +  +                  L++  +  LI E    QE +K G+    + + 
Sbjct: 60  REAYSTILQRLQRQARRAITHEEARMLGLDRQILARLIGEATLNQEADKLGLALADSEIA 119

Query: 104 YFFVQ---HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
               +        G         L +              + +   ++ +  +      +
Sbjct: 120 RIIAKDELFKGANGAFDRQRFEALLRDNGMTEKTFVREQHELLLRHMITDAVVTGLSVPK 179

Query: 161 MEIPANKQKMKN 172
           + +         
Sbjct: 180 IMLEMIHAFQTE 191


>gi|28378171|ref|NP_785063.1| peptidylprolyl isomerase [Lactobacillus plantarum WCFS1]
 gi|254556379|ref|YP_003062796.1| peptidylprolyl isomerase [Lactobacillus plantarum JDM1]
 gi|300767131|ref|ZP_07077043.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308180351|ref|YP_003924479.1| peptidylprolyl isomerase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|46396873|sp|Q88X05|PRSA1_LACPL RecName: Full=Foldase protein prsA 1; Flags: Precursor
 gi|28271006|emb|CAD63911.1| peptidylprolyl isomerase [Lactobacillus plantarum WCFS1]
 gi|254045306|gb|ACT62099.1| peptidylprolyl isomerase [Lactobacillus plantarum JDM1]
 gi|300494950|gb|EFK30106.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308045842|gb|ADN98385.1| peptidylprolyl isomerase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 298

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/285 (10%), Positives = 66/285 (23%), Gaps = 40/285 (14%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K        ++                +   + +G  IT+      +            
Sbjct: 1   MKKWLIALAGVLLTFTLAGCGS------KTVASTSGGKITESQYYSSMK-------GTSS 47

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            K  +Q++I+  + +++      T              +        + S        + 
Sbjct: 48  GKQVLQQMILNKVLEKDYGSKVSTKQVT----------KQYNTYKSQYGSSFSTVLSQNG 97

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
              +    Q     ++K     K    +  +    +  +                  + L
Sbjct: 98  LTTKTFKEQLRSNLLLKEAVKDKVKITDKALKKQWKSYEPK------------VTVQHIL 145

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS-IGKA---QYLLESDLHPQFQN 248
             +     ++ DA +            +K+++     +  GK         S        
Sbjct: 146 VAKSATADKVLDALKKDSSQANFTKLAKKYSTDTTTKNDGGKLSAFDNTNTSYSSKFLTA 205

Query: 249 LLKKSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQN 292
             K      T     T  G E I +      G      A L  Q 
Sbjct: 206 AFKLKNGEYTTSAVKTSNGYEIIRMIKNPGKGKMSDHTADLKKQI 250


>gi|85704061|ref|ZP_01035164.1| hypothetical protein ROS217_13721 [Roseovarius sp. 217]
 gi|85671381|gb|EAQ26239.1| hypothetical protein ROS217_13721 [Roseovarius sp. 217]
          Length = 288

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/249 (7%), Positives = 50/249 (20%), Gaps = 2/249 (0%)

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
                   +V+  I+    + E   +                        E         
Sbjct: 24  DEEAPGTASVENQILIEAAEVERMAAAWEQRWQRPPSEAELSGLIGEAVREQVLYREALT 83

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
              D              + +  D        +  + A  +   +   +   +       
Sbjct: 84  LGLDRDDVVVRRHLRQKYEFLTQDLAYDTDPDDATLRAYFEAQGDRYAQSARVSFHQVLF 143

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ 247
              +   Q  +      A+      P     L    S   D++      +          
Sbjct: 144 SPTRRGAQAEIDAVQTLADLKWATEPGTAETLGDVTSLPSDLAGLDLHAIEAMFGPDFVA 203

Query: 248 NLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYV 305
            L          P V+  G+  + I ++          ++  +       +         
Sbjct: 204 ALQTVEPGRWAGPIVSDYGLHLVWITERAPGRRLAFEEVRQRVRDDWIYEQRVAANEAVY 263

Query: 306 KKLRSNAII 314
           ++L     +
Sbjct: 264 RRLLERYEV 272


>gi|26989789|ref|NP_745214.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           KT2440]
 gi|24984686|gb|AAN68678.1|AE016497_3 peptidyl-prolyl cis-trans isomerase C [Pseudomonas putida KT2440]
          Length = 91

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 6/76 (7%), Positives = 18/76 (23%), Gaps = 1/76 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
                 +  ++            +KF+        G    +    +      ++ K    
Sbjct: 11  KTADEAEKLKQRIANGEAFDVLAKKFSLCPSGKRGGDLGEIRPGQMVGAIDQVIFKKPLR 70

Query: 257 TT-NPYVTQKGVEYIA 271
               P  ++ G   + 
Sbjct: 71  VVHGPIKSKFGYHLVQ 86


>gi|213611260|ref|ZP_03370086.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 200

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 71/194 (36%), Gaps = 8/194 (4%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  +
Sbjct: 67  RHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANIAKQNNMTMDQMRSRLAYDGLNYS 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            ++  +  + I  +V  N+   +   L  E+ A  +++         +      I   + 
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDASTELNLSHILIALPEN 186

Query: 193 QNQGFVQKRIKDAE 206
                V    + AE
Sbjct: 187 PTSEQVNDAQRQAE 200


>gi|1688322|gb|AAB36960.1| PinA [Dictyostelium discoideum]
          Length = 243

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/88 (9%), Positives = 18/88 (20%), Gaps = 1/88 (1%)

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
           +         +  + K  +             +   K +        G         +  
Sbjct: 153 WRESKITRTKERAIAKLNEYRATIISGSATFEDLAHKNSDCSSAKRGGYLDPFKRGQMQR 212

Query: 245 QFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
            F++          +    T  GV  I 
Sbjct: 213 PFEDCAFSLKVGEVSGIVDTDSGVHIIE 240


>gi|66827051|ref|XP_646880.1| hypothetical protein DDB_G0268618 [Dictyostelium discoideum AX4]
 gi|60474962|gb|EAL72898.1| hypothetical protein DDB_G0268618 [Dictyostelium discoideum AX4]
          Length = 268

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/88 (9%), Positives = 18/88 (20%), Gaps = 1/88 (1%)

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
           +         +  + K  +             +   K +        G         +  
Sbjct: 178 WRESKITRTKERAIAKLNEYRATIISGSATFEDLAHKNSDCSSAKRGGYLDPFKRGQMQR 237

Query: 245 QFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
            F++          +    T  GV  I 
Sbjct: 238 PFEDCAFSLKVGEVSGIVDTDSGVHIIE 265


>gi|326385672|ref|ZP_08207302.1| hypothetical protein Y88_2730 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326209830|gb|EGD60617.1| hypothetical protein Y88_2730 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 286

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/182 (9%), Positives = 38/182 (20%), Gaps = 23/182 (12%)

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
            Q +   +  +         E E+ A           E  I                 + 
Sbjct: 100 RQRLIERMRMDMAPEPAEPSEDELMAFYATHAQSYSLEPSISFDHVYFLHAPADPAAVLA 159

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS-----Q 254
           +                    +                  S +   F            Q
Sbjct: 160 RL----------------NAGEKVEGDDFWMGRDLPRYGRSMISAMFGLPFLDKLETLPQ 203

Query: 255 NNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
                P  + KG  ++ + D+R         ++  +         ++     + +LRS  
Sbjct: 204 GRWVGPVASIKGTHFVRVNDRRPAIPRPYPEVRDLVLHDWKTAHADQALQSQLTRLRSRY 263

Query: 313 II 314
            +
Sbjct: 264 RV 265


>gi|224025971|ref|ZP_03644337.1| hypothetical protein BACCOPRO_02722 [Bacteroides coprophilus DSM
           18228]
 gi|224019207|gb|EEF77205.1| hypothetical protein BACCOPRO_02722 [Bacteroides coprophilus DSM
           18228]
          Length = 459

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/257 (10%), Positives = 71/257 (27%), Gaps = 35/257 (13%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKS 93
            S A + ++   I+G+ +TD ++    +   ++                  L  +     
Sbjct: 19  PSLAETGKVLMRIDGKEVTDTELEAYYSRSPVRSRETPQR------YFNHFLFFKLKVAD 72

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
            ++   +T+  F  Q+   +G   +       +      H  Q    + +    V+ +F+
Sbjct: 73  ALSMGWDTLPEFKQQYHVLSGEMLKPVLVKRQEMKAFFQHQYQEEKSRLLTNTWVRTEFL 132

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                                         L          +   Q  +  A  +     
Sbjct: 133 T-----------------------------LPLSQHPAKAEEDQAQSLMDSAYVALQNGM 163

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAIC 273
                  ++ S+   +  G     L   +    + L    +   + P+ +  G+  + + 
Sbjct: 164 TFSELTSRYVSQKPQLKSGTMWMPLVGLVPELAERLQNLDEGVVSRPFYSPVGMHIVRLL 223

Query: 274 DKRDLGGEIALKAYLSA 290
           D++D          L A
Sbjct: 224 DRKDGRDFRDTYPMLQA 240


>gi|227499518|ref|ZP_03929625.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
 gi|227218397|gb|EEI83648.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
          Length = 308

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/300 (9%), Positives = 81/300 (27%), Gaps = 8/300 (2%)

Query: 18  TYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAV 77
               +    ++   S  +++  + +  ++N + I+    SK +   +    +    +  +
Sbjct: 16  LVLAIFSIILLTSCSKTNFSNEN-VIASVNNKTISKDLYSKELKFYQ-SYYSKVYGENFL 73

Query: 78  QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY 137
            E         E+ +  +               +N     ++ S+ L K      + +  
Sbjct: 74  NEKNDRGKTNDEVLREDLVDSMIKDQVMLNDLEKNKIKLDDNKSNELKKLISDKLNGEDS 133

Query: 138 LAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGF 197
           L        V +N F     N  +     +  +K   +++  +          +   +  
Sbjct: 134 LKANIKALGVNENTFNDIIYNDSIRKAHYELFLKINKIKDSDVLEFYKKNKYIQKLYKYN 193

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT 257
                 + E   ++         K        +          D          K+++  
Sbjct: 194 ALVFEDEQEAKLIKDSIKDANDFKSYINKSVRNFSVINSDFVYDKDELLSLSKLKNKDKV 253

Query: 258 TNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           ++    +     + I            +  L  +     +E     Y+ KL   + I  +
Sbjct: 254 SDIIKYKNKYYILMIN------SFNENENELLLRAKDIYLENSYETYLDKLVKESNIKLF 307


>gi|88707182|ref|ZP_01104874.1| PpiC-type peptidyl-prolyl cis-trans isomerase domain protein
           [Congregibacter litoralis KT71]
 gi|88698587|gb|EAQ95714.1| PpiC-type peptidyl-prolyl cis-trans isomerase domain protein
           [Congregibacter litoralis KT71]
          Length = 295

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/308 (7%), Positives = 64/308 (20%), Gaps = 37/308 (12%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
            +K +      ++   V         ++        G VIT  +       +       +
Sbjct: 1   MMKRVLIAISALLSVAVFAADDAGVLIADS------GVVITTEEFEAIYDTMPPSL-KAK 53

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           +     + L +                                 +  D  +  D      
Sbjct: 54  MRDDVAERLEIINSLLVA----------------------RKLAAEADKITPSDDDYWTL 91

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
           +        + ++  +V       +  L  E    ++              +L   P   
Sbjct: 92  HAALVGAKYEYMFKRLVSEVSEPDFEPLARERYVTQKDKYAFVPEVRASSHILLISPPGI 151

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
            +      K     ++ R     +    E           G     +            +
Sbjct: 152 DRT-EVRAKAQGLLDQLRAGADFEAMVAEYSDDAGTRARKGSLGKYIRFGDPGITPPYSE 210

Query: 252 -----KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
                ++    +    +Q GV  I +   ++          +          +       
Sbjct: 211 ALFEIENVGEYSEVTDSQFGVHIIRLDAVQESAYAE--FDKVRDVIITEIKREFAGLARD 268

Query: 307 KLRSNAII 314
           ++R    I
Sbjct: 269 EVRGRFSI 276


>gi|299768860|ref|YP_003730886.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter sp.
           DR1]
 gi|298698948|gb|ADI89513.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter sp.
           DR1]
          Length = 96

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 6/68 (8%), Positives = 22/68 (32%), Gaps = 1/68 (1%)

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT-TNPYVTQ 264
           ++            +++++       G+   + +  L P    ++  +       P  +Q
Sbjct: 21  KKKLQNGADFAKIAKQYSTCNSAKRGGELGEVKKGQLVPVIDKVVFTAAERVLQGPIKSQ 80

Query: 265 KGVEYIAI 272
            G   + +
Sbjct: 81  FGYHLLEV 88


>gi|62184931|ref|YP_219716.1| hypothetical protein CAB299 [Chlamydophila abortus S26/3]
 gi|62147998|emb|CAH63749.1| putative exported protein [Chlamydophila abortus S26/3]
          Length = 361

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/304 (13%), Positives = 86/304 (28%), Gaps = 38/304 (12%)

Query: 34  KSWAMSSRIRTTINGE-VITDGDISKRIALLKLQKINGELEKI-------------AVQE 79
              A+  R+   I+ + V+T  D+ +++ LL        LE                ++ 
Sbjct: 47  AGIAIHDRVLFKIDDDTVVTTLDVIQKLNLLFASSYPQLLESYPARSQYYTAMWPVVLES 106

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           +I E L   + +   I  D  TVN               D S F     +      + + 
Sbjct: 107 VIDEFLMVADAKAKKIQVDPTTVNQEIEAMFGR------DLSFFYVHFDMTPEDIFKVVH 160

Query: 140 IQSIWPDVVKNDFMLKY--GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGF 197
              I   V+      K        +I  +  ++     +  L +  + +I          
Sbjct: 161 RTLIAQRVMGMMVRSKVMLKVTPGKIREHYNQLAEEAAKTTLWKYRVVTIKAATESLSSQ 220

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKI----------HDVSIGKAQYLLESDLHPQFQ 247
           +  RI           K+       +             +D  +  A  +  S ++    
Sbjct: 221 IADRICARLNETQSWNKERLSALALSQGGQFVCSEEFIRNDKELSDAHKMELSSVNYPLA 280

Query: 248 NLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
              +   +       +   +  +       +     ++  +         E  E++Y KK
Sbjct: 281 ICSQPKAH------KSGHKLYVLLEKSTLPMQPLEEIETQIKQTLFMHYAETIESQYKKK 334

Query: 308 LRSN 311
           LR+ 
Sbjct: 335 LRAR 338


>gi|148555266|ref|YP_001262848.1| hypothetical protein Swit_2351 [Sphingomonas wittichii RW1]
 gi|148500456|gb|ABQ68710.1| hypothetical protein Swit_2351 [Sphingomonas wittichii RW1]
          Length = 676

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 52/170 (30%), Gaps = 14/170 (8%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSR--IRTTINGEVITDGDISK 58
           M S    +LS +I L     VL+ F I  + S  S   +S       I+G  ++  D+ +
Sbjct: 32  MISFFRRALSSWIILGILALVLVAFIITGVESPGSIGGTSNGATVAKIDGGKVSTNDLLR 91

Query: 59  RI--ALLKLQKINGELE----------KIAVQELIVETLKKQEIEKSGITFDSNTVNYFF 106
           R+      L++   EL+          +     LI         ++ G       ++   
Sbjct: 92  RVQNQFDALRRERPELDHKSFLAAGGFEGVTNGLIDARAIDAWGKEQGFAIGKRLIDAQI 151

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
                  G++     + +  +       ++ L        +         
Sbjct: 152 AGMDAFRGITGAFDETVMRNRLAQARISERELRADIAGELMRNQILTPAV 201


>gi|307109392|gb|EFN57630.1| hypothetical protein CHLNCDRAFT_50865 [Chlorella variabilis]
          Length = 118

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 7/98 (7%), Positives = 22/98 (22%), Gaps = 1/98 (1%)

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGK 233
                        +  ++ +    V++  +    +              +      S G 
Sbjct: 17  KNSRRPSSWKEPVVTRSEEEALAMVKRFREQIAAAPDLAAAFAALATTESHCGSARSGGD 76

Query: 234 AQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
             +     +   F++          + P  +  G   I
Sbjct: 77  LGWFGRGQMQKAFEDAAFALQVGELSQPMFSDSGCHII 114


>gi|303389522|ref|XP_003072993.1| peptidyl-prolyl cis-trans isomerase [Encephalitozoon intestinalis
           ATCC 50506]
 gi|303302137|gb|ADM11633.1| peptidyl-prolyl cis-trans isomerase [Encephalitozoon intestinalis
           ATCC 50506]
          Length = 138

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/121 (9%), Positives = 34/121 (28%), Gaps = 1/121 (0%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
           +  +        P+   ++ +I ++    R  +    +        + + +K        
Sbjct: 16  YNTETAEKTQRKPSEGFRLYHILIKHEKSRKPVDVSVEEAFLKIKEIYEELKAKVNDSDF 75

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                    K +        G   ++  +++  +F+       +   + P  T  G   I
Sbjct: 76  KEIFKEYAYKHSQCSSSKRGGDLGFVCGNEMMKEFERPAFSLRRGEISAPVSTPSGFHII 135

Query: 271 A 271
            
Sbjct: 136 Y 136


>gi|262283150|ref|ZP_06060917.1| foldase prsA [Streptococcus sp. 2_1_36FAA]
 gi|262261402|gb|EEY80101.1| foldase prsA [Streptococcus sp. 2_1_36FAA]
          Length = 309

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/314 (8%), Positives = 78/314 (24%), Gaps = 40/314 (12%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K       + +  +  + +    + S +   T+ G+ IT  +   ++        +   
Sbjct: 1   MKKKIVAGAVTLLSVAVLAACGKTSGSDKDIITMKGDTITVSEFYDKVK-------SNPS 53

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            +  +  L ++ + +++  K     +         +   +        +   +       
Sbjct: 54  AQQVLLNLTIKEVFEKQYGKKVTDKEVEEAYEKSSKAYGDNFARVLAQAGLTED------ 107

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                   Q     +V+          E E+     K    +    +   ++    ++K 
Sbjct: 108 ----AYREQIRTNKLVEYAVK---KAAEKELTDENYKAAYESYTPEVTAQIIKVDSEDKA 160

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQF--QNL 249
           +      K                   +  +         G+ ++   +   P    +  
Sbjct: 161 KEVLAAAKA---------EGADFAQLAKDNSTDGDTKDKGGEIKFDSAATNVPDAVKKAA 211

Query: 250 LKKSQNNTTNPY-----VTQKGVEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEKHE-- 301
                N  ++         Q     + +  K +   +    K  L       K       
Sbjct: 212 FGLEANAVSDLVTVRSNQGQASYYIVKLVSKTEKSSKWEDYKDKLKQVILTAKQNNTSFI 271

Query: 302 AEYVKKLRSNAIIH 315
              V K   +A I 
Sbjct: 272 QSVVAKELKDANIK 285


>gi|46201422|ref|ZP_00055089.2| COG0760: Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 623

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/190 (7%), Positives = 40/190 (21%), Gaps = 17/190 (8%)

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
                    + F            +   D        E  +    Q+             
Sbjct: 213 LDAYYKDNLSRFMAPEYRALTVLLLRPADVANAIDIDEEMVRETYQQRIEEFSTPERRTV 272

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
                 ++    +           +            +   + I      +   + ++DL
Sbjct: 273 SQIVFDESSAAAKAT---------DMVTGGKDLAAVAKALNTDII-----ELGIVEKNDL 318

Query: 243 HPQFQNLLKKSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE 301
                  + K +   T  P  T  G   + +   +           +  Q      ++  
Sbjct: 319 PEGLAEAVFKLRAGATGQPVKTALGWHVVKVTQVQPGR--TRSFDEVKVQLEQDMRKEKA 376

Query: 302 AEYVKKLRSN 311
            + + +L + 
Sbjct: 377 TDGLSELANR 386


>gi|330889993|gb|EGH22654.1| periplasmic folding chaperone [Pseudomonas syringae pv. mori str.
           301020]
          Length = 208

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/173 (10%), Positives = 48/173 (27%), Gaps = 19/173 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  +   +I       ++ +     I +  +   + +    +NGE I+  ++S+ +
Sbjct: 1   MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDISQNELSQAV 60

Query: 61  ALL-----------------KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            +                          L + A + LI   L  Q    +  +F    ++
Sbjct: 61  DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESAPKGLIDRKLLLQGATDAKFSFSDAALD 120

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
              +Q              F            Q+   Q +  +++        
Sbjct: 121 QQLLQTPEFQVDGKFSADRFDQVIRQLGYSRLQF--RQMLGQEMLIGQVRAGV 171


>gi|329904824|ref|ZP_08273941.1| hypothetical protein IMCC9480_2247 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547816|gb|EGF32582.1| hypothetical protein IMCC9480_2247 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 129

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 1/81 (1%)

Query: 237 LLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE-IALKAYLSAQNTPT 295
              +DL P     L+  +               + + D +D      A    +       
Sbjct: 3   RTTADLPPPLVTKLQGMKKGQLFVIKENDRSLLVGLNDVKDSPVNAEAAAPQIEQFLRNQ 62

Query: 296 KIEKHEAEYVKKLRSNAIIHY 316
           K ++   + + +LRS A + Y
Sbjct: 63  KSQETAKDELARLRSIAKLEY 83


>gi|73540631|ref|YP_295151.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
           JMP134]
 gi|72118044|gb|AAZ60307.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
           JMP134]
          Length = 250

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/270 (7%), Positives = 59/270 (21%), Gaps = 26/270 (9%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              I+ EV+   +  + +                 + L+ + ++ +    +      +  
Sbjct: 4   IVRIDDEVLGVEEFIRLLKFTGQ-----------FEGLVEQMVRDKLTVHAAKRAGMSLA 52

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                + A           +      +             I   + +   M +    +  
Sbjct: 53  QEEIQERADQFRRVQGLHRAADMNHYLDALGVSLDEFEVFITDSLYQERMMEQV-CNDAA 111

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           +    Q          +   V+ S             K  +     +           + 
Sbjct: 112 VHEYFQLNSPRFDSIEVSHIVVDSEG-----------KAKELISYLQDDPDSFAEMAREH 160

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQ-NLLKKSQNNTTNPYVTQKG--VEYIAICDKRDLG 279
           +        G    +L   L    +  +      +   P+        E   +  K    
Sbjct: 161 SIADTRERGGDIGKVLRGSLKTDIEAKVFNAEAGDLLGPFPAADRSFFEVFLVRAKHPAT 220

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
            +  +   +        +     E+V + R
Sbjct: 221 LDSDVAVEVRRLLREEWLMARAQEHVIEAR 250


>gi|329113481|ref|ZP_08242262.1| Peptidyl-prolyl cis-trans isomerase D [Acetobacter pomorum DM001]
 gi|326697306|gb|EGE48966.1| Peptidyl-prolyl cis-trans isomerase D [Acetobacter pomorum DM001]
          Length = 639

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/395 (8%), Positives = 91/395 (23%), Gaps = 85/395 (21%)

Query: 1   MTSKVF-TSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSR-IRTTINGEVITDGDISK 58
           M S +    +  ++  +T   + + F    I     +      +   +  + ++  D++ 
Sbjct: 1   MISYLRRVFVESWLGRVTAIVIFLAFVGWGIGDVMGYMGEETDVVAKVGQQQVSSDDLAT 60

Query: 59  RIAL---------------LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            +                      +  ++    +  LI +       +K  +    + V 
Sbjct: 61  ALQSELPTIARQMGVSDPSHIPLAMQRQVAYQILHRLIGQAELLNTAQKLKVAVPDSAVR 120

Query: 104 YFF----VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK---------- 149
                       N       F+  L  +G+ +  F   +        +++          
Sbjct: 121 DEVFSLPYFKGANGQFDRASFNQKLHDRGLTEQRFLDMVRNDLTTRTILQPLAQAGSVSD 180

Query: 150 ---NDF-------------------MLKYGNLEMEIPANKQKMKNITVREYLIRT----- 182
                F                          +  +            R   +R      
Sbjct: 181 TMLQRFLTYGAKTRVVDFVSIPFAAQPTPKTPDDAVLQRYYNNHPWMFRTPELRHAKIVV 240

Query: 183 --------VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKA 234
                    +     +  +     + R    E   ++L    ++ +  A        G  
Sbjct: 241 LSPQTVADSITMDEADIKRIYDEQKSRYNVPETRDIQLITLQDQAQATAIANAWKVGGNW 300

Query: 235 QYLLES-------DLH----------PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
           Q +  S       ++              Q +    +   ++P  T+ G     +     
Sbjct: 301 QAIQNSAKDAAAVEMPNARPSTIPSTTLRQAVFHAPEGQVSDPLKTEGGWAVFRVTKITA 360

Query: 278 --LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
                    K  + +Q           E  +KL+ 
Sbjct: 361 PHTTPYEDAKKDILSQYRAAVAPSVAGERKRKLQD 395


>gi|320540196|ref|ZP_08039851.1| putative peptidyl-prolyl cis-trans isomerase C (rotamase C)
           [Serratia symbiotica str. Tucson]
 gi|320029862|gb|EFW11886.1| putative peptidyl-prolyl cis-trans isomerase C (rotamase C)
           [Serratia symbiotica str. Tucson]
          Length = 131

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/78 (12%), Positives = 18/78 (23%), Gaps = 5/78 (6%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +K          R         K++        G     ++  +   F   +        
Sbjct: 39  EKLTNVLLVELKRGVSFDTLARKYSGCPSKRHGGSLGEFIKGSMVAAFDKAVFSIP--LL 96

Query: 259 NP---YVTQKGVEYIAIC 273
            P     TQ G   I + 
Sbjct: 97  KPHGSVKTQFGYHIIKVL 114


>gi|3127915|emb|CAA06818.1| peptidylprolyl isomerase [Neurospora crassa]
          Length = 182

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/170 (6%), Positives = 34/170 (20%), Gaps = 1/170 (0%)

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
              +      +      F+S                 ++             +    + +
Sbjct: 10  PEDWEVRHSQSKNLPYYFNSATKTSRWEPPSGTDVDKLKIYMAKYHSPTSQQQQQQQQQQ 69

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                +    +       R   +   +     Q  +       +  +             
Sbjct: 70  PQGKIRCAHLLVKHNQSRRPSSWRESEITRTKQEALTTLQGFEQRIKSGSISLGELALTE 129

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
           +        G   Y    D+  +F++          ++   T  G+  I 
Sbjct: 130 SDCSSARKRGDLGYFGRGDMQKEFEDAAFALKPGEISDIVDTASGLHLIE 179


>gi|213402891|ref|XP_002172218.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4
           [Schizosaccharomyces japonicus yFS275]
 gi|212000265|gb|EEB05925.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4
           [Schizosaccharomyces japonicus yFS275]
          Length = 101

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 6/85 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               +I  A+E      +     ++F+        G   ++    +   FQ+   K + +
Sbjct: 18  EKHSKIMQAQEKLNAGERFDKVAQQFSED-KAKRGGNLGWMTRGSMVGPFQDAAFKLEPS 76

Query: 257 -----TTNPYVTQKGVEYIAICDKR 276
                 T    T  G   I I  K+
Sbjct: 77  KVDKPITTMVKTNFGYHIIMIEGKK 101


>gi|195583230|ref|XP_002081426.1| GD25716 [Drosophila simulans]
 gi|194193435|gb|EDX07011.1| GD25716 [Drosophila simulans]
          Length = 374

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/150 (9%), Positives = 37/150 (24%), Gaps = 8/150 (5%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +       R         +   Q  +   +   +  +    +     +  +     
Sbjct: 135 CRHILVKHNESDRCSSHRERVVRRTRQEALNMIMHARDLIQSGKCEFAELAKMISDCCSA 194

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY 287
              G    L  +     F+  +   +    +  + T  G   +     R        +  
Sbjct: 195 RHGGDLGPLSLTQTSFVFERNILLLNDGELSEIFQTNAGYHILL----RTPINFDNYRTQ 250

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           +S   T   I   +A+    L+ +    Y+
Sbjct: 251 MSRSLTKIVIANEKAKSKAHLKKS---KYF 277


>gi|268563356|ref|XP_002646914.1| Hypothetical protein CBG19616 [Caenorhabditis briggsae]
 gi|187024119|emb|CAP36829.1| hypothetical protein CBG_19616 [Caenorhabditis briggsae AF16]
          Length = 161

 Score = 48.5 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/116 (10%), Positives = 29/116 (25%), Gaps = 1/116 (0%)

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
              E+        +                I  +K      ++   K+ +++     K  
Sbjct: 43  KGSELTQVQCLHLLVKHEGSRNPSSWRSDRITRSKEDAINILRNYEKELKDASDVQGKFR 102

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
              ++F+        G         +   F++          ++   T  GV  I 
Sbjct: 103 ELAKQFSDCSSAKRGGDLGPFKRRQMQKPFEDASFALEVGEMSDIVDTDSGVHLIY 158


>gi|197118887|ref|YP_002139314.1| hypothetical protein Gbem_2510 [Geobacter bemidjiensis Bem]
 gi|197088247|gb|ACH39518.1| conserved hypothetical protein [Geobacter bemidjiensis Bem]
          Length = 526

 Score = 48.1 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/132 (12%), Positives = 42/132 (31%), Gaps = 11/132 (8%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD-VSIGKAQYLLESDLHP--------QF 246
             V++++ + + + +   K    L++ +         G   Y     +          + 
Sbjct: 389 AQVERKLLEVKGAEVAKKKAEEALQQLSKAGAATKETGNFGYSPAGAIPTVGTSPELMEA 448

Query: 247 QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA--YLSAQNTPTKIEKHEAEY 304
              L  +      P    +    + + ++ +       KA   +     P K ++   ++
Sbjct: 449 AFALTPANPVAKQPVKVGERWYAVKLKNRVEAPTTDFAKASATIKQTLLPKKQQEELDKW 508

Query: 305 VKKLRSNAIIHY 316
           +K LR  A I  
Sbjct: 509 LKGLRDKAKIDI 520



 Score = 47.0 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/258 (13%), Positives = 68/258 (26%), Gaps = 28/258 (10%)

Query: 1   MTSKVF-TSLSDFIKLLTTY----FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD 55
           M   +     S  IK++       F+  IF +      KS    +     ++G  I+  D
Sbjct: 1   MLGIMRKYKQSILIKIVFVVIVLSFIGTIFLVWGRGGDKSANGPAGYAAMVDGTKISMDD 60

Query: 56  ISKRIALLKLQ-------------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             K     +               +    L+K  +  +I   L  +E +K GI  D + V
Sbjct: 61  FQKNYYRTRNLYEQIYGRSLTPEMEKQMGLKKATISSMIDNVLTLKEAKKMGIKVDKDEV 120

Query: 103 NYFF--VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                 +   +N G           K         +    Q +     +N    K    +
Sbjct: 121 AAEIAKIPSFQNNGAFDFTLYQNTLKANRVTPKEFEETQEQDLLVQKARNKVKEKATVTD 180

Query: 161 MEIPANKQKMKNI--------TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
            ++    +K  +         +  +      L     N        Q +  +       L
Sbjct: 181 ADLMQEFKKQNDKVNLQYVSFSPADVKGSIKLTDAELNVYLQDHQAQFKTPEQVSIAYTL 240

Query: 213 PKDCNKLEKFASKIHDVS 230
                   K +    +  
Sbjct: 241 VSPAALAAKVSVTPEEAQ 258



 Score = 40.0 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 244 PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHE 301
                     QN    P  T KG+  + + DK+   +     ++A +  +    K  +  
Sbjct: 345 ELVARAFALKQNELGGPVETAKGIYLLKVLDKKPSVVPPLAQVRAQVERKLLEVKGAEVA 404

Query: 302 AEYVKK 307
            +  ++
Sbjct: 405 KKKAEE 410


>gi|195336282|ref|XP_002034770.1| GM14286 [Drosophila sechellia]
 gi|194127863|gb|EDW49906.1| GM14286 [Drosophila sechellia]
          Length = 374

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/153 (9%), Positives = 40/153 (26%), Gaps = 8/153 (5%)

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
               +       R   +     +   Q  + K +   +  +    +     +  +     
Sbjct: 135 CRHILVKHNESDRCSSYRERVVRRTRQEALNKIMHARDLIQSGKCEFAELAKMISDCCSA 194

Query: 229 VSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA-----ICDKRDLGGEI 282
              G    L  +     F+  +   +    +  + T  G   +        + R      
Sbjct: 195 RHGGDLGPLSLTQTSFVFERNILLLNDGELSEIFQTNAGYHILLRTPINFDNYRTKMSRS 254

Query: 283 ALKAYLSAQNTPTKIEKHEAEYVKKL--RSNAI 313
             K  ++ +   +K    +++Y   L  +  A 
Sbjct: 255 LTKIVIANEKAKSKAHLKKSKYFYNLTKKQKAF 287


>gi|284050762|ref|ZP_06380972.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Arthrospira
           platensis str. Paraca]
          Length = 274

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/254 (8%), Positives = 60/254 (23%), Gaps = 7/254 (2%)

Query: 62  LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
            L +   +      ++Q L      ++ +      +  +           N     +   
Sbjct: 25  FLTINDNDSITLSQSLQYLQNSGKLQEFLANILRQYVIDKELQSRDDTNSNAAAIEQAVI 84

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
           +F  ++ + D    Q    +     +    F  +  N           +K      +  R
Sbjct: 85  NFRLERNLSDPQAFQTWLDE---NRLTYKSFHDQVSNGFKRETLKLAVVKENLEEYFQER 141

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
                            +       +             +++        G    + ++ 
Sbjct: 142 KPFLDSVVMSRIVVDDYEMAQSLKSKIDSGEGSFEALAREYSVTTERRVNGMMGAVSKAT 201

Query: 242 LHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH 300
           L    +  ++         P+  +       I +  ++  E      +  Q      ++ 
Sbjct: 202 LPDTLKPTIEGAKVGQIIGPFEVEGRWCLFRIEEFIEVTLET---KGIKKQLQDELFDRW 258

Query: 301 EAEYVKKLRSNAII 314
             E +K L     I
Sbjct: 259 MNEQLKTLTVKMQI 272


>gi|302417108|ref|XP_003006385.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Verticillium albo-atrum
           VaMs.102]
 gi|261353987|gb|EEY16415.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Verticillium albo-atrum
           VaMs.102]
          Length = 177

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/92 (9%), Positives = 21/92 (22%), Gaps = 1/92 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R   +         +          E+ +       +     +        G   Y  + 
Sbjct: 83  RPSSWRQEKIDRTKEDAYSIIRGYEEKIKSGQSSLGDLAVTESDCSSARKRGDLGYFGQG 142

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
           D+  +F+           +    T  G+  I 
Sbjct: 143 DMQREFEEAAFALKVGEVSGIIETASGLHLIE 174


>gi|223996533|ref|XP_002287940.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977056|gb|EED95383.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 225

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 6/83 (7%), Positives = 22/83 (26%), Gaps = 4/83 (4%)

Query: 212 LPKDCNKLEKFASKIH-DVSIGKAQYLLESDL---HPQFQNLLKKSQNNTTNPYVTQKGV 267
           +   C   +K++      ++ G    L            +   +      + P  +  G 
Sbjct: 80  VDAFCIAAKKYSQDKDVAINGGLLGTLAPQGYCRAKELDKACYEVPLGEVSGPIESDYGY 139

Query: 268 EYIAICDKRDLGGEIALKAYLSA 290
             + + ++ +          +  
Sbjct: 140 HLLLVTERTNCPKLDGGYTEIRR 162


>gi|254483636|ref|ZP_05096858.1| PPIC-type PPIASE domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214036098|gb|EEB76783.1| PPIC-type PPIASE domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 284

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/196 (10%), Positives = 60/196 (30%), Gaps = 10/196 (5%)

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                  +      ++    ++     + +L  E    K +       + +   +LF++ 
Sbjct: 74  WQYQLGLEAYQRDFVFRQYRESLQTPDFSDLAQERYKLKYEKIAAIPEKRVSSHILFAVK 133

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS--IGKAQYLLESDLHPQF 246
                 +  +  + +   +           + +++ +   V       +++   +L    
Sbjct: 134 LGSSGKREEITPKAQGVLDQLRAGADFSKMVAEYSDEPGAVEKDGKFDKWVAYGELGVSP 193

Query: 247 QNLL----KKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKH 300
           +         S    ++   TQ G+  I +   ++        +KA +  +     I   
Sbjct: 194 RYTNGLFSIASVGEYSDLVSTQFGIHIIRLDGIQEKSYKPYEEVKADIIKELEAEYISLS 253

Query: 301 EAEYVK--KLRSNAII 314
             EYV    +  NA+I
Sbjct: 254 MKEYVGGFNITENAVI 269


>gi|325954706|ref|YP_004238366.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Weeksella virosa DSM
           16922]
 gi|323437324|gb|ADX67788.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Weeksella virosa DSM
           16922]
          Length = 720

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/113 (9%), Positives = 37/113 (32%), Gaps = 2/113 (1%)

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYL-LESDLHPQFQNLL 250
             +   +       E++    +     EK++         G   ++  ++ L P +++ +
Sbjct: 379 SKEEAKKLAETYLAEAKANPSQFGALAEKYSDDKGSATQKGSIGWVGQQNALTPVYRSFI 438

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAE 303
                 T +   ++ G   I + + ++  G          + +    +K   +
Sbjct: 439 FSKPVGTIDLVESEFGYHIIRVDEAKNKTGYQFAHLVKKIEPSKETSDKAFND 491



 Score = 38.1 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/246 (10%), Positives = 65/246 (26%), Gaps = 26/246 (10%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKS-----WAMSSRIRTTINGEVITDGDISKRI----AL 62
           ++ ++     L+ F    + S  S     +A    +  T+NGE I  G+    I     +
Sbjct: 12  WVIMIVIGVALVAFITGDLFSENSAIRKVFAGDPSVVGTVNGEKIGIGEYQNAINLTTNM 71

Query: 63  LKLQKI---NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
           L+ Q       +  +     L+   + +Q  +  G+         F  Q+          
Sbjct: 72  LQAQGQNVTPNQAAQQTWASLVSSKIVQQIADNIGLKVSDEEFWDFVAQNFGMGSGDEAK 131

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSI------WPDVVKNDFMLKYGNL--------EMEIPA 165
            +    +Q    N          +         ++   +               +++   
Sbjct: 132 NNIAQLEQAASANPEMMQQYQGWLSTANAIRSQLMLQKYSSYVKATTLVTSKEADIQQTY 191

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
           N +       +                ++     K+     E +  +          A+ 
Sbjct: 192 NAEMATIDYAKVDYGTLEKKLNVKVSDEDIKAYVKKHPKQFEVQPMVKLAYTFFPAKATA 251

Query: 226 IHDVSI 231
             + ++
Sbjct: 252 ADEQAV 257


>gi|220930452|ref|YP_002507361.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           cellulolyticum H10]
 gi|220000780|gb|ACL77381.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           cellulolyticum H10]
          Length = 363

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/300 (9%), Positives = 77/300 (25%), Gaps = 35/300 (11%)

Query: 36  WAMSSRIRTTINGEVITDGD------------ISKRI----------ALLKLQKINGELE 73
           ++MSS     +    IT  +            +                 +      +++
Sbjct: 35  FSMSSGDVGKVGELSITKQEYLVLSKFNMNSFLQNAQSADPAKFDWNQKYQGSTAKEQIK 94

Query: 74  KIAVQELIVETLKKQEIEKSGITF---DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
           K  +  +    ++  + +++GI     D + +     Q  +N G S       L +    
Sbjct: 95  KATLDSIQEIKIQLIKAKEAGIKLEKTDLDNIEAAINQRIQNAGGSRSQADKQLKQDYGV 154

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                + +  + +           K    + E+       K    +  +   ++ +    
Sbjct: 155 SLADYKEVYKELVLSQKYIESERNKVKVPDEEVKKQYDDHKADYDKVTVTHILIATQDLQ 214

Query: 191 KLQNQGF-----VQKRIKDAEESRLRLPKDCNKLEKFASKIHD----VSIGKAQYLLESD 241
                        + + ++  +            EK +          + G   ++    
Sbjct: 215 TGAAFTEGKKKEAKDKAENLLKQIQEGADMQALAEKNSDDKDQNGAVNNKGVYTFVKGQM 274

Query: 242 LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE 301
           +           +   T    T  G   +   +KR+      +K  + +     K E   
Sbjct: 275 VPQFEDWAFANRKAGDTGIVETSYGYHVMR-FEKREETKYDDVKDQIKSTILNKKFEDEF 333


>gi|260103202|ref|ZP_05753439.1| peptidylprolyl isomerase [Lactobacillus helveticus DSM 20075]
 gi|260082993|gb|EEW67113.1| peptidylprolyl isomerase [Lactobacillus helveticus DSM 20075]
          Length = 306

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/285 (9%), Positives = 73/285 (25%), Gaps = 33/285 (11%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIE 91
           +  S + ++    +  G  IT       +          +  K A+  +I+    +Q+  
Sbjct: 28  AACSNSGNNATVASYKGGKITQQQYYDEMK-------KSQAGKSALANMIINRALEQQYG 80

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
           K   +   +     + +   +   +    +                   Q++  +++   
Sbjct: 81  KYVSSKKVDKKYSNYKKQYGSQFSAVLQQNGMTASTF-----------KQNLKTNLLSEA 129

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
            +     +  +      K     V           +           Q +   + +S  +
Sbjct: 130 ALKHINKISKKQEQQAWKNYQPKVT-----VQHILVAKKSTAESIIKQLKDGKSFKSLAK 184

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEY 269
                   +  A K+             + L   F+    K      T  P  +Q G   
Sbjct: 185 KYSLDTATKNKAGKLPAFDSTD------NTLDSAFKTAAFKLKTGEVTESPVKSQSGYHV 238

Query: 270 IAICDKRDLGGEIALKAYLSAQNTPTKIEKHE--AEYVKKLRSNA 312
           I +      G     K  +  +   +  +      + +  +  NA
Sbjct: 239 IKMISHPAKGKFADHKKAIDDEIYASMAQDQAVMKDVIATVLKNA 283


>gi|302893486|ref|XP_003045624.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256726550|gb|EEU39911.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 177

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/98 (10%), Positives = 25/98 (25%), Gaps = 2/98 (2%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD-CNKLEKFASKIHDVSIGKA 234
           +    R           +++    + I+  E+                +        G  
Sbjct: 77  KHRDSRRPSSWREAEITRSKEDAYQIIQAHEDKIKSGSITLGELALTESDCSSARKRGDL 136

Query: 235 QYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
            Y  + D+  +F++          +    T  G+  I 
Sbjct: 137 GYFGKGDMQKEFEDAAFGLQPGQMSGIVETASGLHLIE 174


>gi|157151667|ref|YP_001450850.1| foldase protein PrsA [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|189037918|sp|A8AYJ0|PRSA_STRGC RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|157076461|gb|ABV11144.1| proteinase maturation protein, putative [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 309

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/314 (8%), Positives = 77/314 (24%), Gaps = 40/314 (12%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K       + +  +  + +    + S +   T+ G+ IT  +   ++        +   
Sbjct: 1   MKKKIVAGAVTLLSVAVLAACGKTSGSDKDIITMKGDTITVSEFYDKVK-------SNPS 53

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            +  +  L ++ + +++  K     +         +   +        +   +       
Sbjct: 54  AQQVLLNLTIKEVFEKQYGKKVTDKEVEEAYEKSSKAYGDNFARVLAQAGLTED------ 107

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                   Q     +V+          E E+     K         +   ++    ++K 
Sbjct: 108 ----AYREQIRTNKLVEYAVK---KAAEKELTDENYKAAYEAYTPEVTAQIIKVDSEDKA 160

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQF--QNL 249
           +      K                   +  +         G+ ++   +   P    +  
Sbjct: 161 KEVLAAAKA---------EGADFAQLAKDNSTDGDTKDKGGEIKFDSAATNVPDAVKKAA 211

Query: 250 LKKSQNNTTNPY-----VTQKGVEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEKHE-- 301
                N  ++         Q     + +  K +   +    K  L       K       
Sbjct: 212 FGLEANAVSDLVTVRSNQGQASYYIVKLVSKTEKSSKWEDYKDKLKQVILTAKQNNTSFI 271

Query: 302 AEYVKKLRSNAIIH 315
              V K   +A I 
Sbjct: 272 QSVVAKELKDANIK 285


>gi|332885978|gb|EGK06222.1| hypothetical protein HMPREF9456_00096 [Dysgonomonas mossii DSM
           22836]
          Length = 673

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/276 (9%), Positives = 71/276 (25%), Gaps = 47/276 (17%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           ++     +    Y        +   I+G+ +   ++ K      + + +GE         
Sbjct: 6   LVFFLITLHATFYLHAQQVDPVAIQIDGKPVFKSELEKAYRESNVSRSDGE--------- 56

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
                  +E     +    +         A+    +          +      + Q    
Sbjct: 57  -------KESLPDFVQSYIDFRLNIAEAKAQRIDTTGNYIRDLSAARVGMSRKYMQDTIC 109

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           ++ +   + N                                 +    + K+        
Sbjct: 110 ENDYLLKIYNRMQQNVEI-----------------------NHVLVPFEEKIIYPADTVV 146

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIH-------DVSIGKAQYLLESDLHPQFQNLLKKS 253
             + A + + RL K+    E ++  +        +   G   ++     + + +  +   
Sbjct: 147 LYQKAIDLQGRLSKNGFAAEGYSKVLSSSTVLDYNRQNGYIGWVAPFMFNAKVEQAIYSL 206

Query: 254 Q-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
             N  + P     G   I + +KR   G + ++  L
Sbjct: 207 HVNEVSMPIRCSDGYHIIQVLNKRPAVGSVDIEQVL 242



 Score = 43.1 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 5/75 (6%)

Query: 239 ESDLHPQF--QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK 296
           ES L P F       K + + + P  ++ G   I +  K  +     +K+ L A+     
Sbjct: 301 ESRLSPTFIEAAFNLKKEGDVSEPVQSEYGFHIIRLLKKIPVPSYADMKSALKARILE-- 358

Query: 297 IEKHEAEYVKKLRSN 311
                 E   + R  
Sbjct: 359 -SDKSEEMTIEKRKR 372


>gi|212527902|ref|XP_002144108.1| peptidyl-prolyl cis-trans isomerase [Penicillium marneffei ATCC
           18224]
 gi|210073506|gb|EEA27593.1| peptidyl-prolyl cis-trans isomerase [Penicillium marneffei ATCC
           18224]
          Length = 129

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 6/85 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               + ++A E      K  +   +F+        G   + +   LH  F+ +  + + +
Sbjct: 46  EKHSKKEEALEKLRNGAKFDDVAREFSED-KARQGGSLGWKVRGSLHGDFEKVAYELEPS 104

Query: 257 TTNP-----YVTQKGVEYIAICDKR 276
           TT         T  G   I +  ++
Sbjct: 105 TTASPKYAEVKTGFGYHIIMVEGRK 129


>gi|86159490|ref|YP_466275.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776001|gb|ABC82838.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 587

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/289 (9%), Positives = 64/289 (22%), Gaps = 28/289 (9%)

Query: 31  VSYKSWAMSSRIRTTINGE-VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
             +       R    I GE  IT  D++  +                      +     E
Sbjct: 319 PGFAVLVKDKRPIARIAGEAPITVSDLANAVG--------------------EKFFHGVE 358

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
             +     D            +               Q               ++   V+
Sbjct: 359 KPQQEKRVDKLKRPRLDGLIYKRVFTKEARVRKL--DQSEEYLRAVADQENSLVFGTFVQ 416

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
              +      + ++ A     ++      L R    + PD K   +   +       +  
Sbjct: 417 RVLVPDVSIKDADLRAYYDGHRDEFTAAPLYRLDQLAFPDMKGAQRAAERLARGTDFKWL 476

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY 269
               +      + A       +      L  DL     +           P    +G   
Sbjct: 477 KANAEGQLAPAQRALDFEGQLLSAKG--LPEDLAGALASAQVGDYRMHQGPR--GQGYVV 532

Query: 270 IAICDKRD-LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           + +      +      +  +  +     + +   ++  KLR+   I  +
Sbjct: 533 LVVSRTDPQVQPYEEARKDIQKKLFGQALNRAVTDWAAKLRAAHDIETF 581



 Score = 45.8 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/278 (9%), Positives = 66/278 (23%), Gaps = 53/278 (19%)

Query: 43  RTTINGEVITDGDISKRIALL----KLQKINGELEKIAVQELIVETLKKQEIEKSGITFD 98
              I+ +V+   D+ + +A                K+ +Q +I   L   E  + G+   
Sbjct: 74  IARIDDQVVPLADLQEALASTHGERSAGAATAPDFKVVLQRIIDSRLLIMEAREMGLDEL 133

Query: 99  SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGN 158
                                                  +       + ++         
Sbjct: 134 PELKEQL-------------------------------AVFKDVTLRETLQQQVTKDVKP 162

Query: 159 LEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
             +E+    ++                             ++     + +          
Sbjct: 163 DALEVERVYKESVRR---------------WKVRSLLFQKEEDAAAVKPALAGGKSFVEL 207

Query: 219 LEKFASKIHDVSIGKAQYLLESD-LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
            ++  ++      G+ + L     L      L    +   T P   Q G   + + D   
Sbjct: 208 AKQLVAEKKADGSGEPEVLPPDQILPAVAAALQPLHKGEVTAPLKLQNGFAILYVEDL-V 266

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKL-RSNAII 314
              + A +A   A +   +  +    + K+L R    I
Sbjct: 267 YPDDPAKRAEAEAASIDRQGGQILIAFRKELDRKYVKI 304


>gi|148547870|ref|YP_001267972.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           F1]
 gi|148511928|gb|ABQ78788.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           F1]
          Length = 91

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 4/86 (4%)

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNK---LEKFASKIHDVSIGKAQYLLESDLHPQF 246
            K Q +  + K   +AE+ R R+          +K +        G    +    +    
Sbjct: 1   MKAQARHILVKTADEAEKLRQRIANGEAFDVLAKKCSLCPSGKRGGDLGEIRPGQMVGAI 60

Query: 247 QNLLKKSQNNTT-NPYVTQKGVEYIA 271
             ++ K        P  ++ G   + 
Sbjct: 61  DQVIFKKPLRVVHGPIKSKFGYHLVQ 86


>gi|242785190|ref|XP_002480544.1| peptidyl-prolyl cis-trans isomerase [Talaromyces stipitatus ATCC
           10500]
 gi|218720691|gb|EED20110.1| peptidyl-prolyl cis-trans isomerase [Talaromyces stipitatus ATCC
           10500]
          Length = 127

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 6/85 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               + ++A E      K  +   +++        G   + +   LH  F+ +  + + +
Sbjct: 44  EKHSKKEEALEKLRNGAKFDDVAREYSED-KARQGGSLGWKVRGSLHGDFEKVAYELEPS 102

Query: 257 TTNP-----YVTQKGVEYIAICDKR 276
           TT         T  G   I +  ++
Sbjct: 103 TTANPKYAEVKTGFGYHIIMVEGRK 127


>gi|197123566|ref|YP_002135517.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           K]
 gi|196173415|gb|ACG74388.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
           K]
          Length = 590

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/286 (10%), Positives = 68/286 (23%), Gaps = 53/286 (18%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALL----KLQKINGELEKIAVQELIVETLKKQEI 90
           S   +      I+ +V+   ++ + +A      K         K  +Q LI   L   E 
Sbjct: 69  SPLFTQTPVARIDDQVVRLAELQEALATTHDERKAGAATAPDFKAVLQRLIDSRLLIMEA 128

Query: 91  EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
            + G+           V                                        ++ 
Sbjct: 129 REMGLDEAPEVKEQLTVF-------------------------------KDVTLRQTLQQ 157

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
                     +E+    ++                             ++     + +  
Sbjct: 158 QVTQDVKPDALEVERVYKESVRR---------------WKVRSLLFQKEEDAAAVKPALA 202

Query: 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESD-LHPQFQNLLKKSQNNTTNPYVTQKGVEY 269
                    ++  ++      G+ + L     L      L +  +   T P   QKG   
Sbjct: 203 GGKGFVELAKQLVAEKKAEGSGEPEVLPPDQTLPVVTTALQRLQKGQATPPLKLQKGFAI 262

Query: 270 IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL-RSNAII 314
           + + D      + A +A     +   +  +    + K+L R    I
Sbjct: 263 LYVEDI-VYPDDPAKRAEAEKASVDRQSGQVLTAFRKELDRKYVKI 307



 Score = 45.1 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 68/291 (23%), Gaps = 32/291 (10%)

Query: 31  VSYKSWAMSSRIRTTINGE-VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
             +       R    I GE  IT  D++  +                      +     E
Sbjct: 322 PGFAVLVKDKRPIVRIAGEAPITVADLANAVG--------------------EKFFHGVE 361

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
             +     D            +               Q        +      ++   V+
Sbjct: 362 KPQQEKRVDKLKRPRLDGLIYKRVFTKEARVRKL--DQSEEYLRAVEEYENSLVFGTFVQ 419

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
              +      + ++ A     ++      L R    + PD K   +   +       +  
Sbjct: 420 RVLVPDVSLKDDDLRAYYDGHRDEFTAAPLYRLDQLAFPDMKGAQRATERLARGTDFKWL 479

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGV-E 268
               +      + A        G+   L    L       L  +Q      +   +G   
Sbjct: 480 KANAEGQLPPAQRALDFE----GQL--LSAKGLPEDLAGALASAQVGDYRLHQGPRGQGY 533

Query: 269 YIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            + +  + D  +      K  +  +     + +   ++  KLR    I  Y
Sbjct: 534 VVQVVSRTDPQVQPFEEAKPDIQKKLFGQALNRAVTDWAAKLRDAHRIETY 584


>gi|227822015|ref|YP_002825986.1| peptidyl-prolyl cis-trans isomerse D [Sinorhizobium fredii NGR234]
 gi|227341015|gb|ACP25233.1| peptidyl-prolyl cis-trans isomerse D [Sinorhizobium fredii NGR234]
          Length = 630

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/396 (8%), Positives = 86/396 (21%), Gaps = 86/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD----I 56
           M   +  +    I       +++ F +    +      S  +  T+    ++  D     
Sbjct: 1   MLDSLRNAAQTRIVKGLLAILILSFMVWGGQTLMVTGTSDAVV-TVGDVKVSTSDYRLAY 59

Query: 57  SKRIALLKLQKINGELEKI------------------AVQELIVETLKKQEIEKSGITFD 98
            ++++LL  Q       +                   A+ +L  +       ++      
Sbjct: 60  ERQLSLLSRQLGTPLTRQQARAFGVEAQVYSQLVAGAALDQLAEDMNLGLSEDRLARLIG 119

Query: 99  SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS---------------- 142
            +   +           S+   ++ L +Q    N  +  +  Q                 
Sbjct: 120 EDPAFHGANGQFDRMTFSSVLRNAGLTEQDYIKNRSQVAVRSQIVDALSDGFAAPAILVD 179

Query: 143 -----------IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR---------- 181
                      I   ++ N  +        ++ A   +      R    R          
Sbjct: 180 AVGKYRHETRTIDYLLLSNANIDAVKAPGDDVLAPWFESHKANYRAPEYRKFSYIKLEPE 239

Query: 182 ----------TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
                       L +  + + ++      R  +      R   D    +  A    D  +
Sbjct: 240 DLVVNDAVTDEELRADYEKRKESFRTAATRTIEQLAFPSREAADAGAAKLSAGTSFDDLV 299

Query: 232 GKAQY---------LLESDLHPQ---FQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
                           +  +  Q          S    T       G   + + + R   
Sbjct: 300 KAEGKSAADVLLGDFTKERMPDQKAAEAAFAVASDGGVTPVVEGAFGPVILRVTNIRQET 359

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                   +  +           + +  L     I 
Sbjct: 360 V--RSFDEVKEELRKDIALSVARDQLVGLHDK--IE 391


>gi|227878123|ref|ZP_03996103.1| peptidylprolyl isomerase [Lactobacillus crispatus JV-V01]
 gi|256843679|ref|ZP_05549167.1| peptidylprolyl isomerase [Lactobacillus crispatus 125-2-CHN]
 gi|256850147|ref|ZP_05555577.1| peptidylprolyl isomerase [Lactobacillus crispatus MV-1A-US]
 gi|262047710|ref|ZP_06020663.1| peptidylprolyl isomerase [Lactobacillus crispatus MV-3A-US]
 gi|293380430|ref|ZP_06626499.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus crispatus
           214-1]
 gi|295693412|ref|YP_003602022.1| parvulin-like peptidyl-prolyl isomerase [Lactobacillus crispatus
           ST1]
 gi|227862293|gb|EEJ69832.1| peptidylprolyl isomerase [Lactobacillus crispatus JV-V01]
 gi|256615099|gb|EEU20300.1| peptidylprolyl isomerase [Lactobacillus crispatus 125-2-CHN]
 gi|256713119|gb|EEU28110.1| peptidylprolyl isomerase [Lactobacillus crispatus MV-1A-US]
 gi|260571995|gb|EEX28562.1| peptidylprolyl isomerase [Lactobacillus crispatus MV-3A-US]
 gi|290923009|gb|EFD99942.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus crispatus
           214-1]
 gi|295031518|emb|CBL50997.1| Parvulin-like peptidyl-prolyl isomerase [Lactobacillus crispatus
           ST1]
          Length = 298

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/313 (7%), Positives = 69/313 (22%), Gaps = 41/313 (13%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +  ++K +     +    +       S   +     +  G  IT       +        
Sbjct: 1   MKSYMKKIAAVVAVAGVALSTAACSNSGTKA--TVASYKGGKITQEQYYDEMK------- 51

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             +  K  +  +I+    +Q+  K       +          +      + + S      
Sbjct: 52  KSQAGKSTLANMIINRALEQQYGKYVSQKKVD----------KQYNNYKKQYGSQFSAVL 101

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
             +               + +          + +              +  ++ +L    
Sbjct: 102 QQNGMTASSFKQNIKTNLLSEQALKHIKKVTKKQEQQAW----KSYQPKVTVQHIL---- 153

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESD---LHP 244
                     +   +   +            +K++         GK      +D      
Sbjct: 154 -------VAKKSTAQSIIKQLKDGKSFKVLAKKYSLDTATKNKAGKLPSFDSTDTTLDSS 206

Query: 245 QFQNLLKKSQNNT-TNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE-- 301
                 K       + P  +Q G   I +      G     K  +  Q   +  +     
Sbjct: 207 FKTAAFKLKTGEVTSTPVKSQSGYHVIKMISHPAKGKFADHKKAIDDQIYASMAQDQATM 266

Query: 302 AEYVKKLRSNAII 314
            + +  +   A +
Sbjct: 267 KDVIATVLKKADV 279


>gi|254569388|ref|XP_002491804.1| Peptidylprolyl-cis/trans-isomerase (PPIase) [Pichia pastoris GS115]
 gi|238031601|emb|CAY69524.1| Peptidylprolyl-cis/trans-isomerase (PPIase) [Pichia pastoris GS115]
 gi|328351696|emb|CCA38095.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Pichia
           pastoris CBS 7435]
          Length = 168

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/160 (6%), Positives = 37/160 (23%), Gaps = 5/160 (3%)

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
              + +   +   +        +      S        +++ K  +   ++         
Sbjct: 10  RNWTIKISKTHQSEYFYNKETQESSWEPPSGTNLEALGEYIKKRLHDPEQVR----CAHL 65

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
           +   +   +   +  P      +  ++K     ++               +        G
Sbjct: 66  LVKHKNSRKPSSWKEPQITRTKEEAIEKLRGFQKQILDGSATLGQLAATESDCSSHARNG 125

Query: 233 KAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                    +HP F+           ++   +  GV  I 
Sbjct: 126 DLGLFGRKTMHPSFERAAFALQVGEISDIVESDSGVHLIE 165


>gi|149185664|ref|ZP_01863980.1| hypothetical protein ED21_21604 [Erythrobacter sp. SD-21]
 gi|148830884|gb|EDL49319.1| hypothetical protein ED21_21604 [Erythrobacter sp. SD-21]
          Length = 285

 Score = 48.1 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 16 LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ--KINGELE 73
          +     L++   + +      A + ++  T++G  IT G I+  +    +Q  + N EL 
Sbjct: 1  MRNVITLLLCSTLLVACEGGEAPTGQVAATVDGREITVGQINDELRASGIQADQSNEELA 60

Query: 74 KIAVQELIVETLKKQEIEKSG 94
            A+  +I  ++   E     
Sbjct: 61 NRALDAIINRSILAAEARDRE 81


>gi|222056568|ref|YP_002538930.1| hypothetical protein Geob_3486 [Geobacter sp. FRC-32]
 gi|221565857|gb|ACM21829.1| conserved hypothetical protein [Geobacter sp. FRC-32]
          Length = 526

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/249 (10%), Positives = 70/249 (28%), Gaps = 6/249 (2%)

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
            E++  A  + I +   ++  E    T + N         A + G+  ++   F  K   
Sbjct: 275 AEVKDRAKADAIKQKGTREAYETVADTINKNLKGGDIKAAAASLGVKVDETPLFTAKTAP 334

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                +  +  ++    + + +        +        + K   V          +   
Sbjct: 335 APLADEGEVIKRAFL--LKQGELGGPIETAKGIYIIKVMEKKPAAVPPLAEIKGQLTQKV 392

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
            + + +   +K+ ++A     +        E  A       +          +   F   
Sbjct: 393 TEEKARELAKKKAEEALAQLAKGTGTVKTQETGAFAYAANGVIPRIGTSPDLMEAAFNLT 452

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKK 307
                   T  +        + +  + +L        K  +     P K ++    ++K+
Sbjct: 453 AAAPTPKNT--FKAGDRWYAVKLKQRIELNRADFQKNKEQIRQTLLPKKQQEALDNWMKE 510

Query: 308 LRSNAIIHY 316
           L++ A I  
Sbjct: 511 LKAKAKIQI 519



 Score = 45.1 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/191 (10%), Positives = 57/191 (29%), Gaps = 19/191 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFC--IVPIVSYKSWAMSSRIRTTINGEVITDGDISK 58
           M   +       +  +    +++ F   I  +               +NG  I+  D  K
Sbjct: 1   MLGIMRKYKQSVLIKIVFCIIVLSFVGTIFLVWGRGDETTGGDFAAKVNGTKISMDDYLK 60

Query: 59  RIALLKLQKI-------------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
               +K                    + K+A+  LI   L  +E ++ GI  + + +   
Sbjct: 61  NYDRMKSLYQQIYGQAMTPDLEKQLGIRKMAINSLIDNALIVKEAKRMGIAVNKDEIANE 120

Query: 106 F---VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                   ++   + + ++  L    +   +F++    + +     +     +    + +
Sbjct: 121 IAKVPAFQKDGVFNFDQYTQMLKAYRMTPANFEEGQEQEMLVKKA-REKVKERATVSDQD 179

Query: 163 IPANKQKMKNI 173
           +     K  + 
Sbjct: 180 LQQAFNKQNDK 190


>gi|326503622|dbj|BAJ86317.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 221

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 6/76 (7%), Positives = 18/76 (23%), Gaps = 1/76 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
                     ++      +        +        G      +  +   F+  +     
Sbjct: 142 DAADLARALRDQIAAGELQFDAAARDNSDCNSAKRGGDLGPFEKGKMQKPFEKAVIALKV 201

Query: 255 NNTTNPYVTQKGVEYI 270
            + ++   T+ GV  I
Sbjct: 202 GDMSDVVDTESGVHII 217


>gi|281208876|gb|EFA83051.1| hypothetical protein PPL_03839 [Polysphondylium pallidum PN500]
          Length = 254

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/88 (7%), Positives = 27/88 (30%), Gaps = 1/88 (1%)

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
           +   +  +  +  +++  +   + +       +  ++F+        G         +  
Sbjct: 164 WRQDNITITKEEAIKQLQEYRNQIQTGQNSFESLAKQFSDCSSAKHGGMLDAFTRGQMQK 223

Query: 245 QFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
            F+++         ++   T  GV  I 
Sbjct: 224 PFEDMSFSLQVGQLSDIVSTDSGVHIIE 251


>gi|71031999|ref|XP_765641.1| peptidyl-prolyl cis-trans isomerase [Theileria parva strain Muguga]
 gi|68352598|gb|EAN33358.1| peptidyl-prolyl cis-trans isomerase, putative [Theileria parva]
          Length = 116

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 6/60 (10%), Positives = 15/60 (25%), Gaps = 1/60 (1%)

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIA 271
            +        +        G   +   + +   F +       N  ++   T  G+  I 
Sbjct: 54  QEFRRLATAKSECSSARKGGDLGFFDRNTMQKPFTEASFNLKVNEISDLVETDSGIHLIY 113


>gi|84999748|ref|XP_954595.1| peptidylprolyl isomerase [Theileria annulata]
 gi|65305593|emb|CAI73918.1| peptidylprolyl isomerase, putative [Theileria annulata]
          Length = 142

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/139 (9%), Positives = 38/139 (27%), Gaps = 1/139 (0%)

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
             +           ++   +        ++      +K+   R  + R    ++   K +
Sbjct: 1   MIRNFLNFLWNNTSLRFLIINTIIFAMDKVRCAHLLLKHTGSRNPVNRNTGMAVTRTKEE 60

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKK 252
               ++  ++   +S     +        +        G   +   + +   F +   K 
Sbjct: 61  AVSEMKGYLEMLRKSDNLDQEFRRLATAKSECSSARKGGDLGFFDRNTMQKPFTEASFKL 120

Query: 253 SQNNTTNPYVTQKGVEYIA 271
             N  ++   T  GV  I 
Sbjct: 121 EVNEISDLVETDSGVHLIY 139


>gi|154298944|ref|XP_001549893.1| hypothetical protein BC1G_11719 [Botryotinia fuckeliana B05.10]
 gi|150857624|gb|EDN32816.1| hypothetical protein BC1G_11719 [Botryotinia fuckeliana B05.10]
          Length = 124

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/81 (11%), Positives = 28/81 (34%), Gaps = 6/81 (7%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP 260
           ++ +A +         +   + +      + G   +    DL  +F+ +  + + +TT  
Sbjct: 45  KMTEALQKLEAGASFDSVAREMSED-KARAGGALGWKGRGDLDAEFEKVAFEMEASTTAK 103

Query: 261 -----YVTQKGVEYIAICDKR 276
                  T  G   + +  ++
Sbjct: 104 PKYREVKTGFGYHILMVEGRK 124


>gi|313498907|gb|ADR60273.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
           BIRD-1]
          Length = 91

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 5/76 (6%), Positives = 17/76 (22%), Gaps = 1/76 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
                 +  ++            +K +        G    +    +      ++ K    
Sbjct: 11  KTADEAEKLKQRIANGEAFDVLAKKCSLCPSGKRGGDLGEIRPGQMVGAIDQVIFKKPLR 70

Query: 257 TT-NPYVTQKGVEYIA 271
               P  ++ G   + 
Sbjct: 71  VVHGPIKSKFGYHLVQ 86


>gi|223998206|ref|XP_002288776.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975884|gb|EED94212.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 55

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 1/55 (1%)

Query: 222 FASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDK 275
            +      + G         +   F Q    ++      P  TQ G   I I ++
Sbjct: 1   HSGCPSAKNGGSLGEFGPGMMVKNFDQVCFNEAVGVVHGPISTQFGEHLILITER 55


>gi|257069381|ref|YP_003155636.1| SurA-like protein [Brachybacterium faecium DSM 4810]
 gi|256560199|gb|ACU86046.1| SurA-like protein [Brachybacterium faecium DSM 4810]
          Length = 269

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 65/176 (36%), Gaps = 12/176 (6%)

Query: 41  RIRTTINGEVITDGDISKRIALLKLQK-----------INGELEKIAVQELIVETLKKQE 89
            +  T+NGE I+  + ++       Q                L++   ++L+   L  Q 
Sbjct: 75  DVVATVNGEDISKDEFTQIYESQFQQMAMQQQSTGEEVDQAALKQQVAEQLVDNHLLLQG 134

Query: 90  IEKSGITFDSNTVNYFFVQHARNTG-LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
             ++GI      ++    + A+  G  SA++  S L++QG+ +   ++  A Q +    +
Sbjct: 135 ASEAGIEPTDEDIDATLEEIAQQNGLGSADEVVSTLEQQGMSEEDVREDAASQHMLTAYI 194

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
           + +  ++  + E       Q ++  +        V           Q  V ++  +
Sbjct: 195 EQEADIEEPSEEELQAQYDQLVEQQSQAGGESSEVPPFEDVQDQLAQQTVAQQQNE 250


>gi|154496043|ref|ZP_02034739.1| hypothetical protein BACCAP_00327 [Bacteroides capillosus ATCC
           29799]
 gi|150274598|gb|EDN01662.1| hypothetical protein BACCAP_00327 [Bacteroides capillosus ATCC
           29799]
          Length = 426

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/254 (10%), Positives = 69/254 (27%), Gaps = 22/254 (8%)

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
            A  ++I    +  E   +    +   ++         +G       +  +     D   
Sbjct: 134 AAFNQVIRN--QCAERNITLTDEEKAELDQQLADAVETSGGQDAFELALKEVNRTEDGLR 191

Query: 135 KQYLAIQSIWPDVVKNDFMLK--YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             Y A   ++  +    F  K        E+         + V+  L +TV  S      
Sbjct: 192 SMYEASNFLYASLQNQLFPAKDAASLTAEELAQWAADNGKMQVKHILFKTVDDSGNALSD 251

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEK----------FASKIHDVSIGKAQYLLESDL 242
           + +   +++ +D            N  ++          ++        G      E ++
Sbjct: 252 EEKEAAKQKAEDTLAQLQASDDMENLFDQLMNELSEDGRYSDGTLGAPDGYL--FGEGEM 309

Query: 243 HPQFQNLLKKS-QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE 301
             +F++  K   ++  +    T  G   +       L  +  +     A      +    
Sbjct: 310 VQEFEDAAKALGEHELSGIVETSYGYHILL-----RLPVDTEMAREAWASEQEANLSTQM 364

Query: 302 AEYVKKLRSNAIIH 315
            + +      A++ 
Sbjct: 365 NDQMTTWMDEAVVE 378


>gi|220918358|ref|YP_002493662.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956212|gb|ACL66596.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 587

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/286 (10%), Positives = 63/286 (22%), Gaps = 53/286 (18%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALL----KLQKINGELEKIAVQELIVETLKKQEI 90
           S   +      I+ +V+   ++ + +A      K         K  +Q LI   L   E 
Sbjct: 66  SPLFAQTPVARIDDQVVRLAELQEALAATHDERKAGAATSPDFKAVLQRLIDSRLLIMEA 125

Query: 91  EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
            + G+                                          +       + ++ 
Sbjct: 126 REMGLDELPELKEQL-------------------------------AVFKDVTLRETLQQ 154

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
                     +E+                    L    +                     
Sbjct: 155 QLTKDVKPDALEVER-----VYKESVRRWKVRSLLFRQEEDAAAVKPA----------LA 199

Query: 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESD-LHPQFQNLLKKSQNNTTNPYVTQKGVEY 269
                    ++  ++      G+ + L     L      L    +   T P   Q G   
Sbjct: 200 GGKGFAELAKQLIAEKKAEGTGEPEVLPPDQTLPAVAAALKPLQKGEATTPLKLQNGFAV 259

Query: 270 IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL-RSNAII 314
           + + D      + A +A     +   +  +    + K+L R    I
Sbjct: 260 LYVEDI-VYPSDPAKRAEAEKASVDRQSGQLLTAFRKELDRKYVKI 304



 Score = 43.5 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 28/291 (9%), Positives = 69/291 (23%), Gaps = 32/291 (10%)

Query: 31  VSYKSWAMSSRIRTTINGE-VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
             +       R    I GE  IT GD++  +                      +     E
Sbjct: 319 PGFAVLVKDKRPIVRIAGEAPITVGDLANAVG--------------------EKFFHGVE 358

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
             +     D            +               Q        +      ++   V+
Sbjct: 359 KPQQEKRVDKLKRPRLDGLIYKRVFTKEARVRKL--DQSEEYLRAVEDQENSMVFGTFVQ 416

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
              +      + ++ A     ++      L R    +  D K   +   +       +  
Sbjct: 417 RVLVPDVSLKDEDLRAYYDGHRDEFTSAPLYRLEQVAFADMKGAQRAAERLARGTDFKWL 476

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGV-E 268
               +      + A        G+   L    L       L  +Q      +   +G   
Sbjct: 477 KANAEGQLPPAQRALDFE----GQL--LSAKGLPEDLAGALGSAQVGDYRLHQGPRGQGY 530

Query: 269 YIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            + +  + +  +      +  +  +     + +   ++  KLR+   I  +
Sbjct: 531 VVLVVSRTEPQVQPYAEARPDIQKKLFGQALNRAVTDWAAKLRAAHEIETF 581


>gi|94497171|ref|ZP_01303743.1| hypothetical protein SKA58_13253 [Sphingomonas sp. SKA58]
 gi|94423276|gb|EAT08305.1| hypothetical protein SKA58_13253 [Sphingomonas sp. SKA58]
          Length = 650

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/399 (7%), Positives = 81/399 (20%), Gaps = 96/399 (24%)

Query: 9   LSDFIKLLTTYF-VLIIFCIVPIVSYK-------------SWAMSSRIRTTINGEVITDG 54
           LS F +++ + F  +  F  + +++               +            G  +T  
Sbjct: 2   LSVFRRIIHSKFGAIFAFLFLGVIAAAFILGDVTSGQFGGASLSGGGTAAKAKGYKLTVA 61

Query: 55  DISKRIALLKLQKINGELE------------KIAVQELIVETLKKQEIEKSGITFDSNTV 102
           ++  R+  +         E                 +L+     +   +  GI      V
Sbjct: 62  ELQDRVQRVFENARRSSPELQIGEFFAQGGGAQVFDQLVQSLTLRAYADDQGIHISKRLV 121

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND----------- 151
           +    Q       +    +         +   +Q L        + +             
Sbjct: 122 DAQIAQIPAFQDAAGNFSNDNFRALLARERLSEQALRDDISREILQRQLLAPIGIGARPS 181

Query: 152 --------------------------FMLKYGNLEMEIPANKQKMKNITVREYLIRT--- 182
                                     F+      + ++    +K  +        R    
Sbjct: 182 ENLVLPYASLLLEARQGQVAAIPAVAFLDDKDPTDAQLADFYKKNSDRFTIPEQRRIRYA 241

Query: 183 ----------------VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK- 225
                            + +  +    N    + R  +               +  A K 
Sbjct: 242 VVDAERFAQASMPSDAEISAYYNQNKANYAASENRSVEQLVLPTEAGAKAIAAQVKAGKS 301

Query: 226 -IHDVSIGKA----------QYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICD 274
                                 L  +        +    Q     P     G   + +  
Sbjct: 302 LPQAAQGAGLSVSTLDAQSRGQLTSATSKAVADAVFAARQGELIGPVRGPLGWLLLRVTA 361

Query: 275 K--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
              +      A++  +       K ++   ++  KL   
Sbjct: 362 VQDKPARPLAAVRDEIVKTLRVQKEKQLLGDFTAKLEDQ 400


>gi|261749602|ref|YP_003257288.1| peptidylprolyl cis-trans isomerase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497695|gb|ACX84145.1| peptidylprolyl cis-trans isomerase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 710

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/261 (12%), Positives = 64/261 (24%), Gaps = 4/261 (1%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           I   +I   I   K       L  ++      +   + E                  ++ 
Sbjct: 221 IGKNEIENFIKKHKFLYKRENLRSLSFAICRSKPSLEDEKNMKNKMEKLFHKFKSTNKNY 280

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                 +E                 Q   +Q+     +          +  +I   K   
Sbjct: 281 MFVLTKSEKPFDSNFYLKNHLPPILQNFVVQNNKIGSMFGPIKEDNTYVMAKIIGKKMIS 340

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI--HD 228
            ++     LI         NK   +   +   K  +  +    K    + K +  +    
Sbjct: 341 DSVLSSHILISHKEAIRSSNKRTKKEAEEIANKVYKILQKDPSKFEELVRKKSDDLINAK 400

Query: 229 VSIGKAQYLLESDLHPQ--FQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA 286
            + G   +L  ++ +    F     +++        TQ G   I I DK           
Sbjct: 401 KNQGSLGWLKYNEQNSIGKFNIFDSENKKRMIGLTETQFGYHIIRIDDKSVPKPAYQFAV 460

Query: 287 YLSAQNTPTKIEKHEAEYVKK 307
            +       K E      V+K
Sbjct: 461 IVKTLIPSKKTEDRLYSRVRK 481


>gi|163743877|ref|ZP_02151248.1| PPIC-type PPIASE domain protein [Phaeobacter gallaeciensis 2.10]
 gi|161382818|gb|EDQ07216.1| PPIC-type PPIASE domain protein [Phaeobacter gallaeciensis 2.10]
          Length = 78

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 21 VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN---GELEKIAV 77
          + +   +   +S  +   ++ +  T+NGE IT G +    A L  Q        L    +
Sbjct: 11 LALTVALTLPISAAAEPHANTVVATVNGEEITIGHMIIARATLPQQYQQLPDDVLYDAIL 70

Query: 78 QELIVE 83
           +LI +
Sbjct: 71 DQLIQQ 76


>gi|256003621|ref|ZP_05428610.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum DSM 2360]
 gi|281416651|ref|ZP_06247671.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum JW20]
 gi|255992412|gb|EEU02505.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum DSM 2360]
 gi|281408053|gb|EFB38311.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum JW20]
 gi|316939760|gb|ADU73794.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum DSM 1313]
          Length = 368

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/359 (11%), Positives = 97/359 (27%), Gaps = 46/359 (12%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRI------RTTINGEVITDG 54
           M +    S    +K+     V  I  +  +++      +  I         +NGE +   
Sbjct: 2   MENNAGISKKPVVKVHVILLVAGILVLSAVLAILVAYQAGLIYGDFSELARVNGEPVYVK 61

Query: 55  DISK-------------------------RIALLKLQKINGELEKIAVQELIVETLKKQE 89
           +                            R      +       K A+ +++   +++  
Sbjct: 62  EYKMKLLSNTTEVINYFSQSYAVETKENFRTDSYSGEAPVEMARKKALDDIVEVKVQQIL 121

Query: 90  IEKSGITFDSNTVN--YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
            ++ GI   ++            R    + +           G+  +  Y     +   +
Sbjct: 122 AKEKGIIESTDYREFLKELENENRQRKDALKSNKVVYGPDNYGEIEYFNYSFDNMV-SKL 180

Query: 148 VKNDFMLKYGNLEMEIPANKQ---KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
            +     +    E ++ +        +     +  I+ +     D K      ++ + + 
Sbjct: 181 KEKLKENELSIPEEKLESMYNLLKDTRFKLPDDIKIQVISIGFTDEKGIINDDLKSKARV 240

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVSIG-KAQYLLESDL------HPQFQNLLKKSQNNT 257
             E   +   +    E+ A   +  S   +  +  E  +             LK      
Sbjct: 241 KIEEAKKRIDNGEPFEEVALDYNPKSGVLEYVFTKEKQMAKDISHPELLDEALKLKPGQV 300

Query: 258 TNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +           I +C ++   G +  K     Q     IEK   EY+ KL   A +  
Sbjct: 301 SEIIERSTDFVLI-LCKEKKSTGYLPYKD-ARKQLLDELIEKDYQEYIDKLVEQADVKI 357


>gi|327403972|ref|YP_004344810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fluviicola taffensis
           DSM 16823]
 gi|327319480|gb|AEA43972.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fluviicola taffensis
           DSM 16823]
          Length = 737

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/275 (8%), Positives = 63/275 (22%), Gaps = 14/275 (5%)

Query: 44  TTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
             ++ + I   D  ++       ++    +       I  +    +     +        
Sbjct: 228 VKVSDKEI--RDYYEKNKEKPKYQVMAGRDVKFFDIAIEPSKSDIDTFNLEMKKIKTAFA 285

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML----KYGNL 159
                       S          Q                +P  +   F      +    
Sbjct: 286 ASTNDSLFILQNSELPRMYASGNQLTFRPEGDAKARQGMTYPVAMDTVFKTATVGQIVGP 345

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
             +    +           L    +          +    K++ D+    +        +
Sbjct: 346 YDDKGKTRIAKVLGFNSTVLKARHILINAPEGDAKKVASAKKLADSLVKLVNNANFAEFV 405

Query: 220 EKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
            K++         G  +  ++ ++   F     +    T     TQ G   + + D++  
Sbjct: 406 TKYSEDQGSKEKGGVYEDFMDYEMVEPFSKFAMEKPIGTIGVVKTQFGFHIMEVMDRK-A 464

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           G +  + A +     P        +    L+  A 
Sbjct: 465 GSKFPVLAVVEKTMLP------SEDTKADLKDKAY 493


>gi|170743494|ref|YP_001772149.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium sp.
           4-46]
 gi|168197768|gb|ACA19715.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium sp.
           4-46]
          Length = 632

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 6/88 (6%), Positives = 22/88 (25%), Gaps = 7/88 (7%)

Query: 233 KAQYLLESDL--HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYL 288
                  ++L             Q   + P   + G   + +       +     +   +
Sbjct: 315 DLGTFTRAELFDPAVADAAFALPQGTVSEPVKGRFGTVLLRVTAIEPGSIKPFEEVADQI 374

Query: 289 SAQNTPTKIE---KHEAEYVKKLRSNAI 313
             +    +     +   + ++  R+ A 
Sbjct: 375 RTEIARERARDGLEKVHDAIEDQRAGAK 402


>gi|149925857|ref|ZP_01914121.1| hypothetical protein LMED105_06517 [Limnobacter sp. MED105]
 gi|149825974|gb|EDM85182.1| hypothetical protein LMED105_06517 [Limnobacter sp. MED105]
          Length = 284

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/286 (9%), Positives = 67/286 (23%), Gaps = 56/286 (19%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
             +  S   S R   +ING  IT+ ++        +   +G    I +   I        
Sbjct: 53  FAAGDSSGKSDREVASINGMKITEMEL-------GVMLQSGVDRAIVIDRYIN------- 98

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
                                       E  ++    +    +       ++ +   V  
Sbjct: 99  --------------KVVAAERGREMYVEEAKAALRAAEREVLSTLYTTKRMEELRKAV-- 142

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
                     + ++ A           +    +   S     +Q      ++ +     +
Sbjct: 143 ---------SDDDVKAYYDANVLDQNFQQWKVSYYLSNDQKDVQQTLEKLRKGEKDALDQ 193

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEY 269
           L+   +       A  +                    + + K  +   +     + G+  
Sbjct: 194 LKPLVEQGDGYAVAQALPYNLG---------------RVVSKMKKGEFSEVLRLRNGLLV 238

Query: 270 IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           + I D + L         L          +     +++ R  A + 
Sbjct: 239 LKIEDSKQLK--KPTVEELKQDIVQALALEKFNAELEQARRQAKVE 282


>gi|255318653|ref|ZP_05359884.1| peptidyl-prolyl cis-trans isomerase C [Acinetobacter radioresistens
           SK82]
 gi|262379122|ref|ZP_06072278.1| peptidyl-prolyl cis-trans isomerase C [Acinetobacter radioresistens
           SH164]
 gi|255304335|gb|EET83521.1| peptidyl-prolyl cis-trans isomerase C [Acinetobacter radioresistens
           SK82]
 gi|262298579|gb|EEY86492.1| peptidyl-prolyl cis-trans isomerase C [Acinetobacter radioresistens
           SH164]
          Length = 94

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 8/68 (11%), Positives = 21/68 (30%), Gaps = 1/68 (1%)

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT-NPYVTQ 264
           ++            +++++       G+   + +  L P    L+          P  +Q
Sbjct: 21  KKKLQSGADFNKLAQQYSTCNSARRGGELGEVKKGQLVPVIDKLVFSGAERVIHGPVKSQ 80

Query: 265 KGVEYIAI 272
            G   + I
Sbjct: 81  FGFHLLEI 88


>gi|86131509|ref|ZP_01050107.1| peptidylprolyl isomerase [Dokdonia donghaensis MED134]
 gi|85817954|gb|EAQ39122.1| peptidylprolyl isomerase [Dokdonia donghaensis MED134]
          Length = 713

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/271 (8%), Positives = 64/271 (23%), Gaps = 24/271 (8%)

Query: 50  VITDGDISKRIALLKLQKINGELE-----KIAVQ-ELIVETLKKQEIEKSGITFDSNTVN 103
            ++  +I + +   K +    E       K   +  L  E   K E+ K    + +    
Sbjct: 212 PVSKDEIQEYVNDHKDEFQTEETRSIRFVKFVEEASLEDENALKAELSKLRNEYTARNGA 271

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV---------------- 147
               +       + E     +D   +       +                          
Sbjct: 272 TGVTETFAGFDKTEEIEDFLIDNSDVPFVDRWFFKKDLPSTNADTLFALGKGGVYGPYKD 331

Query: 148 -VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
               +        +M        +                        +   +       
Sbjct: 332 GRYMNLSRVVDVRKMPDSVKTSHILIDFQGAVTNTARGPIPSSATRSKEDAKKLADSLLS 391

Query: 207 ESRLRLPKDCNKLEKFASKIHD-VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQK 265
             +    K  +  ++F++   +  + G   Y   +     +++ +  +   T     T  
Sbjct: 392 VLKRNKNKFEDLAKEFSTDKSNSDNGGDLDYQNPNLFAAGYRDFIVDNNEGTIGIAETNF 451

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNTPTK 296
           G   I I D++++   I +   +       K
Sbjct: 452 GYHVINIVDQKNVQDVIKVATVVKEILPSDK 482



 Score = 38.5 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 21/77 (27%), Gaps = 1/77 (1%)

Query: 239 ESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE 298
             +            +   ++P    +GV  I +    +  G     A+   Q       
Sbjct: 631 AGNEPKVVGAAFGLKEGEVSSPIEGSRGVYVIEVVKVSEAPGLENYAAFAGQQ-AQKSRA 689

Query: 299 KHEAEYVKKLRSNAIIH 315
               + +  L+  A I 
Sbjct: 690 AVSTKVLNALKEAADIE 706


>gi|329942658|ref|ZP_08291437.1| hypothetical protein G5Q_0326 [Chlamydophila psittaci Cal10]
 gi|332287253|ref|YP_004422154.1| putative exported protein [Chlamydophila psittaci 6BC]
 gi|313847839|emb|CBY16833.1| putative exported protein [Chlamydophila psittaci RD1]
 gi|325507071|gb|ADZ18709.1| putative exported protein [Chlamydophila psittaci 6BC]
 gi|328814918|gb|EGF84907.1| hypothetical protein G5Q_0326 [Chlamydophila psittaci Cal10]
 gi|328914499|gb|AEB55332.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]
          Length = 361

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/304 (12%), Positives = 87/304 (28%), Gaps = 38/304 (12%)

Query: 34  KSWAMSSRIRTTINGE-VITDGDISKRIALLKLQKINGELEKI-------------AVQE 79
              A+  R+   I+ + V+T  D+ +++ LL        +E                ++ 
Sbjct: 47  AGIAIHDRVLFKIDDDTVVTTLDVIQKLNLLFASSYPQLMESYPARSQYYTAMWPVVLES 106

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           +I E L   + +   I  D  TVN               D S F     +  +   + + 
Sbjct: 107 VIDEFLMVADAKAKKIQVDPTTVNQEVEAMFGR------DLSFFYVHFDMTPDDVFKVVH 160

Query: 140 IQSIWPDVVKNDFMLKY--GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGF 197
              +   V+      K        +I  +  ++     +  L +  + +I          
Sbjct: 161 RTLVAQRVMGMMVRSKVMLKITPGKIREHYNQLAEEAAKTTLWKYRVVTIKAATESLSSQ 220

Query: 198 VQKRIKDAEESRLRLPKDCNKLEKFASKI----------HDVSIGKAQYLLESDLHPQFQ 247
           +  +I           K+       +             +D  +  A  +  S ++    
Sbjct: 221 IADKICARLNETQSWNKERLSALALSQGGQFVCSEEFIRNDKELSDAHKMELSSVNYPLA 280

Query: 248 NLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
              +   +       +   +  +       +     ++  +         E  E++Y KK
Sbjct: 281 MCSQPKAH------KSGHKLYVLLEKSTMPMQPLEEIETQIKQTLFMNYAESIESQYKKK 334

Query: 308 LRSN 311
           LR+ 
Sbjct: 335 LRAR 338


>gi|83815274|ref|YP_445915.1| hypothetical protein SRU_1798 [Salinibacter ruber DSM 13855]
 gi|83756668|gb|ABC44781.1| hypothetical protein SRU_1798 [Salinibacter ruber DSM 13855]
          Length = 304

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/290 (10%), Positives = 72/290 (24%), Gaps = 33/290 (11%)

Query: 28  VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKK 87
             +   ++ A        +    +T  D+ + +A +   + + E  K AV + +  TL  
Sbjct: 36  AGLAGCQTEAPPDSYVARVGTHYLTGADLDRMLAGMGPVRDSTEARKQAVDQWVTRTLLY 95

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           +E E+  ++ +         Q       +                  + Y         +
Sbjct: 96  REAERLNLSSNDEVQQRLRRQRRAVLVSALRTRLEEEADVRPTPEKVRTYFERHKEQLRL 155

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
            +    ++                         R  L + P                   
Sbjct: 156 REPYVRVQ------------YLAAPDRPTAQTARQALRTPPAPPDTTWA----------R 193

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGV 267
                  D  +  + + +    S       L   +      L    +  TT         
Sbjct: 194 LVTEYATDTTRARRLSRRFVPQS------RLGQQVPALADRLADLQEGETTPVVQASGRY 247

Query: 268 EYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAE----YVKKLRSNAI 313
             + + D+R   G      ++  +       +   +     V++LR+ A 
Sbjct: 248 HVLRL-DRRLSEGTPPELDWVEPKIRRRLRIRARKQIHATEVQRLRNRAQ 296


>gi|300707607|ref|XP_002996004.1| hypothetical protein NCER_100963 [Nosema ceranae BRL01]
 gi|239605260|gb|EEQ82333.1| hypothetical protein NCER_100963 [Nosema ceranae BRL01]
          Length = 138

 Score = 47.7 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/136 (8%), Positives = 38/136 (27%), Gaps = 7/136 (5%)

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
           +W  + + +    Y   +        +  +     +++   + S   N       +    
Sbjct: 1   MWHRLKEPETNKIYFYNDETKEKTYIRPNDGFRLYHILIKHINSRNPNDRSEVEALNLIN 60

Query: 203 KDAEESRLRL------PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQN 255
           K   + +  +           K    +        G   ++ +++++ +F+       + 
Sbjct: 61  KLYLDLQQNINIENFREYFKAKAMVVSECKSKSKGGDLGFVCKNEMYKEFEKAAFMLKRG 120

Query: 256 NTTNPYVTQKGVEYIA 271
               P  T  G   I 
Sbjct: 121 RLVGPVKTPSGFHIIY 136


>gi|327392985|dbj|BAK10407.1| peptidyl-prolyl cis-trans isomerase D PpiD [Pantoea ananatis
           AJ13355]
          Length = 309

 Score = 47.4 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/81 (11%), Positives = 26/81 (32%), Gaps = 2/81 (2%)

Query: 234 AQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQ 291
             +L  S    + +N   K +   +    +  G     + D     +     +++ ++ +
Sbjct: 1   MGWLEPSTTPDELKNAGLKEKGQLSGVIKSSVGFLIARLDDIIPEQVKPLADVRSEVADE 60

Query: 292 NTPTKIEKHEAEYVKKLRSNA 312
               K      +  +K+   A
Sbjct: 61  VKQEKAVDAFYKLQQKVSEAA 81


>gi|315050532|ref|XP_003174640.1| peptidyl-prolyl cis-trans isomerase ssp1 [Arthroderma gypseum CBS
           118893]
 gi|311339955|gb|EFQ99157.1| peptidyl-prolyl cis-trans isomerase ssp1 [Arthroderma gypseum CBS
           118893]
          Length = 219

 Score = 47.4 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 7/109 (6%), Positives = 23/109 (21%), Gaps = 1/109 (0%)

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
               +    +       R   +   +        ++      +          +     +
Sbjct: 108 EGKIRASHLLIKHNESRRPSSWRESEITRSKSEAIEILRSHKQRIEAGEASLGDIATSES 167

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                   G   +    ++  +F+           ++   T  GV  I 
Sbjct: 168 DCSSARKRGDLGFFGRGEMQAEFEQAAFALKVGEVSDIVETASGVHLIE 216


>gi|262195599|ref|YP_003266808.1| hypothetical protein Hoch_2377 [Haliangium ochraceum DSM 14365]
 gi|262078946|gb|ACY14915.1| hypothetical protein Hoch_2377 [Haliangium ochraceum DSM 14365]
          Length = 339

 Score = 47.4 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/275 (9%), Positives = 70/275 (25%), Gaps = 30/275 (10%)

Query: 42  IRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           +  T++G  +    +  +   L L +        A+ + +   L  +E E+ G++     
Sbjct: 67  VVATVDGAPVYGDCVRTQAQALGLDRAG------ALAQCVDFELLAREAERRGLSARPEV 120

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
                           ED               +     +++    V+            
Sbjct: 121 QAA---GERERVRRFIEDEFERRYPDPASAPRAELLEVYEALKGQYVRPALRHTAFLRVP 177

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
               ++         + L+  +  ++ +        +++  K+    R            
Sbjct: 178 VAEDSEAGGDEDRQAKALVDEIYAAVRERDDLETAELERVGKEIAGEREVEVLRAPLA-- 235

Query: 222 FASKIHDVSIGKAQYLLESDLHPQFQNL--LKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
                             + L P++               P  TQ G + I + +     
Sbjct: 236 ---------------YPGARLVPEYLEPALSLTEPGTVAPPARTQWGWDIILLTELEPAL 280

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
                   +  +       +   ++++ LR  A +
Sbjct: 281 DRSP--DEVIDELFQLWQRRAFQQWLRALREPAAV 313


>gi|324121062|gb|AAF60409.2| Hypothetical protein Y110A2AL.13 [Caenorhabditis elegans]
          Length = 161

 Score = 47.4 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/91 (12%), Positives = 26/91 (28%), Gaps = 1/91 (1%)

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
                I  +K      ++   K+ +++     K     ++F+        G         
Sbjct: 68  WRSDHITRSKDDAINILKNYEKELKDASNIEGKFRELAKQFSDCSSAKRGGDLGPFERRQ 127

Query: 242 LHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
           +   F++          ++   T  GV  I 
Sbjct: 128 MQKPFEDASFALEIGEMSDIVDTSSGVHLIY 158


>gi|39935954|ref|NP_948230.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris CGA009]
 gi|39649808|emb|CAE28330.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodopseudomonas
           palustris CGA009]
          Length = 633

 Score = 47.4 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/394 (8%), Positives = 93/394 (23%), Gaps = 85/394 (21%)

Query: 1   MTSKVFTSLSDFI-KLLTTYFVLIIFCIVPIVSYKSW--AMSSRIRTTINGEVITDGDIS 57
           M   +  + S++I K + T  + ++     +                 I    I+     
Sbjct: 1   MLRGMRKASSNWIGKTIMTIVMGVLIVSFGVWGIADVFRGFGRSTLAKIGSTEISTEQFR 60

Query: 58  KRIA-------------LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           +                L   Q     +++  +Q+ I E    ++  + G+         
Sbjct: 61  QTYNDRLQQIGRQFGRPLTPDQARAIGIDRQVLQQTIAEAALDEDARRLGLGQSDADTMK 120

Query: 105 FFVQHARNTGLSAEDFSSFLDK---------QGIGDNHFKQYLAIQSIWP---------- 145
             ++     G + +  ++   +         Q       +  L  Q              
Sbjct: 121 SILEDPNFKGANGQFDANRFQQLIRQFGFTEQRYLAEQRRVALRRQIAGSLTAGLEAPKT 180

Query: 146 ------------------DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
                              +              ++ A     K         +     +
Sbjct: 181 LMQALSQFQSEERAIDYLKLTDAQAGTIAAPSPADLTAFYDSHKAQFRAPEYRKISFLVV 240

Query: 188 PDNKLQNQGFV----QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG----------- 232
               +     V     +++ +  + +L  P+    L+     + +   G           
Sbjct: 241 TPESIAKWAEVSDADAQKLFEQRKDKLSTPEKRQLLQIVFPSVEEAQAGRAKIASGTSFA 300

Query: 233 -------------KAQYLLESDL--HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
                            + +S++              N  + P   Q G   + +     
Sbjct: 301 DLAKERGVKPADLDLGLVSQSEMLDQKVAAAAFALPLNEVSQPVQGQFGTVLLEVTKIE- 359

Query: 278 LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             G+    A ++A       ++   + V++L   
Sbjct: 360 -TGKQPDYASVAASLKRDLAQERARKQVQELHDK 392


>gi|209549414|ref|YP_002281331.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535170|gb|ACI55105.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 630

 Score = 47.4 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/396 (7%), Positives = 84/396 (21%), Gaps = 86/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI---- 56
           M   +  +   ++  L    ++  F I  +        +S    T+  + +   +     
Sbjct: 1   MFHILRRAAQTWVAKLLMLLLVASFGIWGVSRSLITGSNSTTVVTVGDQHVDVNEFHLAY 60

Query: 57  SKRIALLKLQKINGELEKIA------------------VQELIVETLKKQEIEKSGITFD 98
            +++A L  Q       + A                  + +L  +       ++      
Sbjct: 61  QRQVASLGQQFGTRLTPEQARAFGVEQQVLAQLVAGASLDQLAEDMNLGLSEDRLAQLIA 120

Query: 99  SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS---------------- 142
            +                +   ++ + +        K  +  Q                 
Sbjct: 121 DDPAFKAVNGKFDRELFISRLRNANIRQDDYIKERSKVAVRSQVVDAISNGFTAPKTLID 180

Query: 143 -----------IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                      I   ++ N  +        ++ A          +    R +++      
Sbjct: 181 ALKLYGNESRSIDYLLLTNANIEPIKAPADDVLAAWFDGVKQRYQAPEYRKLVYLSLQPA 240

Query: 192 LQNQGFVQKRIKDAEESRLR-----------LPKDCNKLEKFASKI-HDVSIG------- 232
                      +  E                + +     +  A      +  G       
Sbjct: 241 DIADAATVTDDQIHEAFDKSKDTYRTPESRTIEQLTFTSKDLAVAAETALKGGTSFDQLV 300

Query: 233 ----------KAQYLLESDLHPQF---QNLLKKSQNNTTNPYVTQKGVEYIAICDKRD-- 277
                           +  +  Q              TT       G   + I + +   
Sbjct: 301 SDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSKDGGTTPVVEGSFGSVILRITNIKPET 360

Query: 278 LGGEIALKAYLSAQN-TPTKIEKHEA--EYVKKLRS 310
                 +K  +  Q       ++     + ++ LR+
Sbjct: 361 TKNFDEVKEDIRKQLALSNASQEVINVHDRIEDLRA 396


>gi|325521604|gb|EGD00389.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
           TJI49]
          Length = 207

 Score = 47.4 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 63/221 (28%), Gaps = 44/221 (19%)

Query: 43  RTTINGEVITDGDISKRIALL--KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I        +A L  + Q  + +L++   QEL+   +  QE  + GI   ++
Sbjct: 25  IAVVNGTPIPKSRADAMVAQLVQQGQTDSPQLQQAVRQELVNREILMQEAIRRGIPNRAD 84

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                                                +A Q++    +  DF+ K    +
Sbjct: 85  VKAQV-------------------------------AVAQQTVVLRAMIEDFLKKNQPTD 113

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E+ A    +                + + +       + +            K  +  +
Sbjct: 114 AEVKARYDDLVKGVGGNREYHLHHILVDNEQQAKDLIAKIK---------AGAKFEDLAK 164

Query: 221 KFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN 259
           +++       + G   +       P+F    +K  +   T+
Sbjct: 165 QYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTD 205


>gi|125975643|ref|YP_001039553.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum ATCC 27405]
 gi|125715868|gb|ABN54360.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum ATCC 27405]
          Length = 382

 Score = 47.4 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/359 (11%), Positives = 97/359 (27%), Gaps = 46/359 (12%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRI------RTTINGEVITDG 54
           M +    S    +K+     V  I  +  +++      +  I         +NGE +   
Sbjct: 16  MENNAGISKKPVVKVHVILLVAGILVLSAVLAILVAYQAGLIYGDFSELARVNGEPVYVK 75

Query: 55  DISK-------------------------RIALLKLQKINGELEKIAVQELIVETLKKQE 89
           +                            R      +       K A+ +++   +++  
Sbjct: 76  EYKMKLLSNTTEVINYFSQSYAVETKENFRTDSYSGEAPVEMARKKALDDIVEVKVQQIL 135

Query: 90  IEKSGITFDSNTVN--YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
            ++ GI   ++            R    + +           G+  +  Y     +   +
Sbjct: 136 AKEKGIIESTDYREFLKELENENRQRKDALKSNKVVYGPDNYGEIEYFNYSFDNMV-SKL 194

Query: 148 VKNDFMLKYGNLEMEIPANKQ---KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
            +     +    E ++ +        +     +  I+ +     D K      ++ + + 
Sbjct: 195 KEKLKENELSIPEEKLESMYNLLKDTRFKLPDDIKIQVISIGFTDEKGIINDDLKSKARV 254

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVSIG-KAQYLLESDL------HPQFQNLLKKSQNNT 257
             E   +   +    E+ A   +  S   +  +  E  +             LK      
Sbjct: 255 KIEEAKKRIDNGEPFEEVALDYNPKSGVLEYVFTKEKQMAKDISHPELLDEALKLKPGQV 314

Query: 258 TNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           +           I +C ++   G +  K     Q     IEK   EY+ KL   A +  
Sbjct: 315 SEIIERSTDFVLI-LCKEKKSTGYLPYKD-ARKQLLDELIEKDYQEYIDKLVEQADVKI 371


>gi|260433616|ref|ZP_05787587.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417444|gb|EEX10703.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 613

 Score = 47.4 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/349 (8%), Positives = 75/349 (21%), Gaps = 82/349 (23%)

Query: 41  RIRTTINGEVITDG----DISKRIALLKLQKING---------ELEKIAVQELIVETLKK 87
           R    +  EVIT      ++ + I  ++ Q              L++ A+  L+      
Sbjct: 37  RTVAQVGDEVITVDAYARELQREIRAVEAQTGQPLQMSQARDLGLDQRALSRLVALAALD 96

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS---IW 144
            E+ + GI+     +    ++     G            Q       +            
Sbjct: 97  NEVAQLGISVGDENLQKEILRIQAFQGADGSFDREAYRFQLEQIGMTEAEFEEDLRKETA 156

Query: 145 PDVVKNDFMLKYGN-----------------------------------LEMEIPANKQK 169
             +V+   M                                         + +I A  + 
Sbjct: 157 RTIVQGAIMNGIEMPAVLTDTLADYVQARRSFTVATLSADALDAPVPEPTDADIQAFYEA 216

Query: 170 MKNITVREYLIRTVLFSIPDNKLQN------------QGFVQKRIKDAEESRLRLPKDCN 217
             +        +     +    LQ+                +++ +  E   +      +
Sbjct: 217 NTDRFTLPRTKKITYAVLSPAMLQDTVEVDEDALRRLYDQRKEQYQQPERRLVERLVYPS 276

Query: 218 KLEKFASKIHDVSIG-----------------KAQYLLESDLHPQFQNLLKKSQNNTTNP 260
           + E   +K      G                     +   DL      +      +   P
Sbjct: 277 EAEATEAKAQLEVGGVDFEQLVRARELELSDVDLGDVTRDDLGEAADAVFAAEVGDVVGP 336

Query: 261 YVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
             +  G     +              +  L  +    +  +      ++
Sbjct: 337 LPSAFGPALFRVNGTLAEHNVTFDEAEPELREELAAERARRVIESQAEE 385


>gi|330444318|ref|YP_004377304.1| hypothetical protein G5S_0644 [Chlamydophila pecorum E58]
 gi|328807428|gb|AEB41601.1| conserved hypothetical protein [Chlamydophila pecorum E58]
          Length = 359

 Score = 47.4 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/297 (13%), Positives = 96/297 (32%), Gaps = 24/297 (8%)

Query: 34  KSWAMSSRIRTTINGE-VITDGDISKRIALL-------------KLQKINGELEKIAVQE 79
              A+  R+   ++ E V+T  D+ +++ +L                +    +  + ++ 
Sbjct: 45  TGLAIHDRVLFKVDEENVVTTLDVIQKLNILFYTSYPHLIDSYPARSQYYSAMWPVVLES 104

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           ++ E L   + ++  +  D  TVN    +                 +  +        L 
Sbjct: 105 ILDEFLMYADAKEKKLDVDPTTVNQEIEKILGRDLTPFYSHFDMTPEDIVKVIERT--LT 162

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
            Q +   +V++  MLK    +++  A  +  +    R      VL      +       +
Sbjct: 163 AQRVMGMMVRSKAMLKVTPGKIK-EAYDKLAREAEKRFVWKYRVLTIKAATESLASSIAE 221

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL---LKKSQNN 256
           K      E++    +    L          S        + +L    +     +   +  
Sbjct: 222 KVSTRLNETKCWDKERLLSLVLSQGGQFTCS--DEFCRNDDELSESHKQELLEVAYPEKW 279

Query: 257 TTNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
              P  ++ G +   + DK    +     L+A +  +   ++  + E +Y +KLR+ 
Sbjct: 280 CGLPKASKSGYKLFVLVDKSVGSVAPLEELEAQIKQRLFASEAVELEKQYKEKLRAR 336


>gi|89898508|ref|YP_515618.1| hypothetical protein CF0701 [Chlamydophila felis Fe/C-56]
 gi|89331880|dbj|BAE81473.1| hypothetical protein [Chlamydophila felis Fe/C-56]
          Length = 360

 Score = 47.4 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 92/297 (30%), Gaps = 24/297 (8%)

Query: 34  KSWAMSSRIRTTIN-GEVITDGDISKRIALLKLQKINGELEKI-------------AVQE 79
              A+  R+   ++   V+T  D+  ++ LL        ++                ++ 
Sbjct: 46  AGIAIHDRVLFKVDEDNVVTTLDVIHKLNLLFASSYPQLVDSYPARSQYYTAMWPVVLES 105

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           +I E L   + +   I  DS TVN      A      ++ +  F        N   + L 
Sbjct: 106 VIDEFLMVADAKAKKIQVDSTTVNQEIE--AMFGRDLSQFYVHFEMTPEDIFNVVNRTLI 163

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
            Q +   +V++  MLK    ++      Q  ++          V+      +  +     
Sbjct: 164 AQRVMGMMVRSKVMLKVTPGKIR-EHYNQLAEDAAKTTVWKYRVVTIKAATESLSSQIAD 222

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT-- 257
           K      E++    +  + L          S  +     + +L    +  L         
Sbjct: 223 KVCARLNETQSWNKERLSALALSQGGQFVCS--EEFTRNDKELSEAHKMELSTVNYPLTI 280

Query: 258 -TNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            + P   + G +   + DK    +     ++  +         E  E++Y  KLR+ 
Sbjct: 281 CSQPKAHKSGYKLYVLLDKSAMTMQPLEEIETQIKQTLFMNYAETIESQYKMKLRAR 337


>gi|291546534|emb|CBL19642.1| hypothetical protein CK1_15290 [Ruminococcus sp. SR1/5]
          Length = 419

 Score = 47.4 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/338 (9%), Positives = 81/338 (23%), Gaps = 38/338 (11%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +  S+    K   T  V +    +           ++I  T+N + I  G +S    + +
Sbjct: 1   MRNSVK---KAAVTALVCVTAAGMMAGCGNKKLDGTKIAVTVNKQEIPFGVVSLAARMQQ 57

Query: 65  LQKINGELEKIAV----QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
            Q     + K+ +       I  T    + +++       T      +       ++E  
Sbjct: 58  AQA--EAMYKMYLGGGSDMSIWSTKMDDDSDETYGENAVTTSVETVEKMCLEKEHASEYD 115

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
               D +        +     +    + +           +E+     KMK+    +  +
Sbjct: 116 VEITDDEQKALEEAAKNFMAANSDETIAELAVDEDMVKTFLELETYDVKMKDAIEAKADV 175

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           +                       +++   +  ++  K      +            +  
Sbjct: 176 KLDEKEYQQMSFSYASAKVSGDDLSDDDIKKNKENLQKFYDKVKEDPAADFNTLGDKISE 235

Query: 241 DLHPQFQNLLKKSQNNTT-------------------------NPYVTQKGVEYIAICDK 275
           D+           + + +                             T      + +  K
Sbjct: 236 DMTATTGTCPTYEEGDDSAANGTTYPDEVRTALRKLDEGALNEEIIKTDSVWYVVRLDSK 295

Query: 276 RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
            D     + K       T TK +    +     +  A 
Sbjct: 296 NDKTATESKKE----SLTNTKKDDFYNDTTDGWKKKAD 329


>gi|291565694|dbj|BAI87966.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 254

 Score = 47.4 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/254 (8%), Positives = 60/254 (23%), Gaps = 7/254 (2%)

Query: 62  LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
            L +   +      ++Q L      ++ +      +  +           N     +   
Sbjct: 5   FLTINDNDSITLSQSLQYLQNSGKLQEFLANILRQYVIDKELQSRDDTNSNAAAIEQAVI 64

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
           +F  ++ + D    Q    +     +    F  +  N           +K      +  R
Sbjct: 65  NFRLERNLSDPQAFQTWLDE---NRLTYKSFHDQVSNGFKRETLKLAVVKENLEEYFQER 121

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
                            +       +             +++        G    + ++ 
Sbjct: 122 KPFLDSVVMSRIVVDDYEMAQSLKSKIDSGEGSFEALAREYSVTTERRVNGMMGAVSKAT 181

Query: 242 LHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH 300
           L    +  ++         P+  +       I +  ++  E      +  Q      ++ 
Sbjct: 182 LPDTLKPTIEGAKVGQIIGPFEVEGRWCLFRIEEFIEVTLET---KGIKKQLQDELFDRW 238

Query: 301 EAEYVKKLRSNAII 314
             E +K L     I
Sbjct: 239 MNEQLKTLTVKMQI 252


>gi|32170809|gb|AAP57685.1| GelI [Sphingomonas elodea]
          Length = 300

 Score = 47.4 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/295 (9%), Positives = 83/295 (28%), Gaps = 50/295 (16%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--LEKIAVQELIVETLK 86
              S +      ++  T++G+ IT  +++  +    + +       E++A+Q +I   + 
Sbjct: 19  GCGSKEGKLDKGQVVATVDGDEITVFELNAEVQAAPVPQGTDRKLAEQLALQRIIERKIL 78

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
            +   +  +    + +                                    A + I   
Sbjct: 79  SKIAREQKLDKTPSFLIQQ-------------------------------RRADELILTS 107

Query: 147 VVKNDFMLKYG-NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
           ++++          + ++   +    +   +  +        P     ++      +K  
Sbjct: 108 MLRDKIAGGISQPTDADVAQYQAAHPDRFAQRKVYSIEQIVFPPPSSSDKFKEFAPLKTL 167

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQK 265
           ++   +L  D  +  +  ++           L  + L P+    +            TQ+
Sbjct: 168 DQLAAKLTADGVQFRRAPTQ-----------LDTAALPPEIAGKIAALPAAEMFILPTQQ 216

Query: 266 GV--EYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA--IIHY 316
           G+    I     + L G+   +          +  K     + +    A   + Y
Sbjct: 217 GITANVITATTIQPLTGDQ-AREVALNALRTERFSKAADAQLNERLKKARETVKY 270


>gi|171685376|ref|XP_001907629.1| hypothetical protein [Podospora anserina S mat+]
 gi|170942649|emb|CAP68301.1| unnamed protein product [Podospora anserina S mat+]
          Length = 180

 Score = 47.4 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/177 (9%), Positives = 42/177 (23%), Gaps = 2/177 (1%)

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY 156
            + N        H      ++++   + +                      +      K 
Sbjct: 1   MNGNQQETGLPPHWEVRHSNSKNLPYYFNSVDRTSRWEPPAGTDPEKLKVYMATYHSAKA 60

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD- 215
                +  + K +  ++ V+    R           +++      IK  E+         
Sbjct: 61  PLPTGDAQSGKIRAAHLLVKHRDSRRASSWKEAEITRSKEEAMSIIKAHEQRIKSGEITL 120

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                  +        G   Y    D+  +F++      +   +    T  G+  I 
Sbjct: 121 GELALSESDCSSARKRGDLGYFGRGDMQKEFEDAAFALQKGEISGVVDTASGLHLIE 177


>gi|302837668|ref|XP_002950393.1| hypothetical protein VOLCADRAFT_60391 [Volvox carteri f.
           nagariensis]
 gi|300264398|gb|EFJ48594.1| hypothetical protein VOLCADRAFT_60391 [Volvox carteri f.
           nagariensis]
          Length = 175

 Score = 47.4 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/78 (11%), Positives = 24/78 (30%)

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
               + ++       G+  +L      PQF+     +         T +G+  I + ++R
Sbjct: 1   EMARQHSTCGSAKKGGELGWLSRGTFFPQFETAAFAAPVGGLARATTGRGLHVIKVLEER 60

Query: 277 DLGGEIALKAYLSAQNTP 294
                  +     ++   
Sbjct: 61  YQSAVQQISPQDLSELLS 78


>gi|226293704|gb|EEH49124.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Paracoccidioides
           brasiliensis Pb18]
          Length = 190

 Score = 47.4 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/92 (9%), Positives = 23/92 (25%), Gaps = 1/92 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R   +   +     +  ++   +  E  R       +     +        G   +    
Sbjct: 96  RPSSWREAEITRSKEEALEILRRHEESIRSGEKTLGDIAMSESDCSSARKRGDLGFFGRG 155

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
           ++  +F+           +    T  GV  I 
Sbjct: 156 EMQAEFEEAAFALEPGQLSGIVETASGVHLIE 187


>gi|115461134|ref|NP_001054167.1| Os04g0663800 [Oryza sativa Japonica Group]
 gi|113565738|dbj|BAF16081.1| Os04g0663800 [Oryza sativa Japonica Group]
          Length = 72

 Score = 47.4 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 8/66 (12%), Positives = 17/66 (25%), Gaps = 1/66 (1%)

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQ 264
           E+      K  +   + +        G         +   F+  +        ++   T 
Sbjct: 3   EKIVAGERKFEDVATEESDCNSAKRGGDLGPFERGKMQKAFEKAVLALKVGEISDVVDTD 62

Query: 265 KGVEYI 270
            GV  I
Sbjct: 63  SGVHII 68


>gi|313205229|ref|YP_004043886.1| hypothetical protein Palpr_2772 [Paludibacter propionicigenes WB4]
 gi|312444545|gb|ADQ80901.1| hypothetical protein Palpr_2772 [Paludibacter propionicigenes WB4]
          Length = 571

 Score = 47.4 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/196 (10%), Positives = 57/196 (29%), Gaps = 8/196 (4%)

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
                      FK+    +       + + + K    E E      +  +          
Sbjct: 362 IGMLNDPEFLTFKRNRQFKIYTQHYKETNVIPKVVVTEAESRKFYNQNIDKFKTFGSCEV 421

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
           +++   D++          ++  ++   +  +D  K  K               + +  L
Sbjct: 422 LIYKFKDSQTAGNSMPPIAVRYTQKPVPQEIQDRAKSIKIPEPTPATL-----KISDKTL 476

Query: 243 HPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEK 299
               ++ + +      + P     G   I +  K D  +     +K+ ++A+       +
Sbjct: 477 SANIKSAIIRLMPTQVSMPIQMNNGYWVIYLKSKSDLIIIPYEEVKSEIAAKLPEILSNQ 536

Query: 300 HEAEYVKKLRSNAIIH 315
              + + KL+ +  I 
Sbjct: 537 ILEQQISKLKLSYKIK 552



 Score = 38.1 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 31/302 (10%), Positives = 83/302 (27%), Gaps = 43/302 (14%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
            L  + F++ +   + ++   +   S+     I    +T  D                  
Sbjct: 14  SLFHSIFLISLLGFILLIESCTGYGSNDTLLQIGDYKVTVADYE---------------- 57

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
                        + E  +     D++       +   N       + +    +   D  
Sbjct: 58  -----------YMRNENNERYKLTDADLKKKIIDEGYINAYALENKYDTIASLKTRLDYA 106

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
            + Y A+Q     +    +       E ++    +K K     E+++      +      
Sbjct: 107 IRFYAAVQ--DGYMWNKKYKQALVVSETQLREAYEKQKLEYNIEFILFPDKGLLDKYCSS 164

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS 253
           +   +     ++ +SR+           +     ++                +  L++  
Sbjct: 165 HSAGLSSSDFNSIKSRIGSKSGVYSSSTYQRYPFNLPGLD------------YDKLIQCK 212

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           + +   P  T +G     + + R+        LK  L         +K++ E  K++   
Sbjct: 213 KGDVWGPVQTPEGYFIYRMVESRNTFKVPYNTLKPNLQKILEHKLAQKYDNERKKEVLQK 272

Query: 312 AI 313
           A 
Sbjct: 273 AK 274


>gi|329893793|ref|ZP_08269881.1| hypothetical protein IMCC3088_2019 [gamma proteobacterium IMCC3088]
 gi|328923516|gb|EGG30830.1| hypothetical protein IMCC3088_2019 [gamma proteobacterium IMCC3088]
          Length = 309

 Score = 47.0 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/331 (10%), Positives = 80/331 (24%), Gaps = 41/331 (12%)

Query: 1   MTSKVFTS-LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTIN------GEVITD 53
           M  K+  S    F+ L   ++                   +R++  ++      G  +TD
Sbjct: 1   MIQKLLQSRALGFLVLGAIFYAASQVVFPEPKPTIGPLAETRVQALVDEWQALMGRKMTD 60

Query: 54  GDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
            ++     LL  +     L   A++          E+           +           
Sbjct: 61  SELR---GLLVAELDRDILFAKALE---------LELHVIDPVIAQRLLRNVEFLGLYAE 108

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
              AE   S L  +    +   +   IQ     ++           + +I       +  
Sbjct: 109 QSDAEKIQSALAMRMHLGDEVVKRRLIQLAEEWLL--LHSPPKSLSDQDIRDYYSNNQAQ 166

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGK 233
                         P  +  +   +  ++    +   +                 +    
Sbjct: 167 FWAPERYTFSHVFFPREREADMRQLAAKLGTEIQDFDQALNY---------GAPFLPGYH 217

Query: 234 AQYLLESDLHPQFQNLL-------KKSQNNTTNPYVTQKGVEYIAICDK---RDLGGEIA 283
                   L  QF                   +P  +  G   + + +    R L  + A
Sbjct: 218 FTRQTAEQLARQFGAGFVSNFLALPPRVGEWQSPIASTFGWHLVWLQEVETGRTLSLDEA 277

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            K  + A     + +   ++    LR +  I
Sbjct: 278 QKD-IVATLQRERRDMALSDAKAVLRQDYEI 307


>gi|325134515|gb|EGC57160.1| hypothetical protein NMBM13399_0963 [Neisseria meningitidis M13399]
          Length = 512

 Score = 47.0 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/309 (11%), Positives = 83/309 (26%), Gaps = 22/309 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +F S+  +         LI    V           +     +  E I+D  I+  I   +
Sbjct: 1   MFHSIEKYRTPAQVLLGLIALTFVGFGVSTVSHPGADYIVQVGDEKISDHSINNAIQNEQ 60

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                G       Q L+     KQ  +  GI+  S  +    V        + +   + L
Sbjct: 61  A-DGGGPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFDHALL 119

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           ++     +  +     +      ++N          + +   + +      +        
Sbjct: 120 NRYLSQRHMSEDQFVEEIRDQFALQNLV--NLVQNSVLVGDAQAEQLIRLTQVNRTIRSH 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
              PD  +      +  ++    +  +       ++     ++       Q + E+++  
Sbjct: 178 TFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEVKN 237

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            F+  + +   N   P                        KA +  +    K      + 
Sbjct: 238 AFEERVARLPANEAKP-------------------SFEQEKAAVENELKMKKAVADFNKA 278

Query: 305 VKKLRSNAI 313
            +KL  +A 
Sbjct: 279 KEKLGDDAF 287


>gi|144898531|emb|CAM75395.1| peptidyl-prolyl cis-trans isomerse D [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 645

 Score = 47.0 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/284 (8%), Positives = 67/284 (23%), Gaps = 12/284 (4%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISK------RIALLKLQKINGELEKIAVQELIVETL 85
                     +   +  E      + +      R AL +      E  +     ++    
Sbjct: 127 GLSLATSDDEVIAKVAAEPSFRNQLGQFDRDLLRQALSRAGWSEQEFMRQEKDNIL--RT 184

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
           +  E    G+T                         +    Q    +        ++   
Sbjct: 185 QLAESLSGGLTAPQALTEPLIRWKRETRQAETVSIKASSMPQPAAPDAATLEQYYKANAN 244

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
             +  +F      L     A +       +     +         + +    +      +
Sbjct: 245 SFMAPEFRAITALLLRTTDAGRGLTVTDEMLTEAYKAREDEFHSPERRTVSQIVLADDAS 304

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQ-NLLKKSQNNTTNPYVTQ 264
            +    + K    ++  A  +  V++ +   + + DL  +    +    Q   T P  + 
Sbjct: 305 ADKAAEMVKAGKDIKVIAKDL-GVNVIELGLVEKGDLPDELAGPVFDVGQGALTQPVKSA 363

Query: 265 KGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
            G     +        +    A +        + +   + + +L
Sbjct: 364 LGWHVAKVTAI--TAEKTRSLAEVREMLAADILREKSMDRITEL 405


>gi|289677225|ref|ZP_06498115.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
           pv. syringae FF5]
          Length = 78

 Score = 47.0 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 7/67 (10%), Positives = 19/67 (28%), Gaps = 1/67 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNT 257
           +++  + +             +  +S       G         +  +F  ++  +  N  
Sbjct: 12  EEKCNELKAQIEGGADFAEIAKANSSCPSSRQGGDLGSFGPGQMVKEFDTVVFSAPVNTV 71

Query: 258 TNPYVTQ 264
             P  TQ
Sbjct: 72  QGPVKTQ 78


>gi|152990776|ref|YP_001356498.1| hypothetical protein NIS_1031 [Nitratiruptor sp. SB155-2]
 gi|151422637|dbj|BAF70141.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 490

 Score = 47.0 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 52/384 (13%), Positives = 101/384 (26%), Gaps = 77/384 (20%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI- 60
             K    L   I + T  FV   F       Y S + +      +  E IT  +  +R  
Sbjct: 5   MQKHKKYLVITIWISTIAFVGAGFVGWGAYKYGSASDA---VAEVGNEKITLKEFQQRYA 61

Query: 61  ------------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
                        L + Q     L+K+ + ELI E L +      G+      V      
Sbjct: 62  NVYNYYNKMLQGKLDQEQAKKMGLDKMVLNELIQEALLENYAHDLGLIVTDEEVAQKIAS 121

Query: 109 HA---RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK---------- 155
                +N       ++  L +  I    F+Q +  + +   + +     K          
Sbjct: 122 MKVFWQNGHFEKSLYNKLLQQNRIKPKDFEQSIRKELLLNKLHQALLYSKPLQLEFDTMA 181

Query: 156 ----------------------YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                                     E++   +K K +  T  +Y +  +   I   K+ 
Sbjct: 182 SALFMGDKIEYTVLTDKDIDVTVTRTELKKYYDKHKNEYKTAPKYDLSIIEMPIKHFKVS 241

Query: 194 NQG-----------------------FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS 230
            +                          +K++    + +    +   K  +F        
Sbjct: 242 EEELKSYYKQNRLKYKDANGKILPFDKAKKQVMHDLDIKKSKKEALKKYIQFKKGKLQAQ 301

Query: 231 IGKAQYLLESDLH-PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAY 287
                    +    P  Q + + SQN+   P + +     + +  K              
Sbjct: 302 KHLIVAQNNTSFPLPLMQKIAQASQNSVLKPILVEDRYVIVKVNKKIPPLPMPFEKAVTE 361

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSN 311
           +       K  +   E  KK+  N
Sbjct: 362 VKKDLLQQKRYQLLLEKAKKMVKN 385


>gi|86749913|ref|YP_486409.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris HaA2]
 gi|86572941|gb|ABD07498.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris HaA2]
          Length = 633

 Score = 47.0 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/167 (11%), Positives = 48/167 (28%), Gaps = 18/167 (10%)

Query: 1   MTSKVFTSLSDF----IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI 56
           M   +  + S++    I ++    +++ F +  I         S    TI G  IT    
Sbjct: 1   MLRGIRNASSNWVGKTIMMIVMGVLILSFAVWGIADIFRGFGRST-LATIGGTEITTEQF 59

Query: 57  SKRIA-------------LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            +                L   Q     +++  +Q++I E    ++  + G+        
Sbjct: 60  RQTYNDRLQQIGRQFGRPLTPDQARAFGIDRQVLQQVIAEAALDEDARRLGLGQSDEETM 119

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
              +      G+      +   +        +Q    +     + + 
Sbjct: 120 KSILNDPNFKGVGGAFDPNRFQQVIRQFGFTEQRYIAEQRKVALRRQ 166


>gi|32490901|ref|NP_871155.1| hypothetical protein WGLp152 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166107|dbj|BAC24298.1| ppiD [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 628

 Score = 47.0 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/204 (10%), Positives = 52/204 (25%), Gaps = 10/204 (4%)

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
           N    ++  +    K         +   I  +  ++       K      E+     K  
Sbjct: 202 NINSVSDSEAEAEYKLNSHKYVTPKKFNINYLKININDIKNKDKIIAKSKEVQEWYLKNI 261

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
                    R  +              ++ I    + +           K       V+ 
Sbjct: 262 KKFTLPEKKRYSIIQFDSE--------KEAIFYLNKIKNEKDFFEIAKNKSKDIFSSVNN 313

Query: 232 GKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK--RDLGGEIALKAYLS 289
           G   ++ E  +  + +    K++N  +    +  G   I + +   +           + 
Sbjct: 314 GDIGWIQEDFIIEEIKIANLKNKNEISKIIKSSSGYLIIMLTEIIPKVEQDLKYFYKEIE 373

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAI 313
                 K  K    Y++K++  A 
Sbjct: 374 NYIKEEKSIKIFNNYIEKIKILAK 397


>gi|316933952|ref|YP_004108934.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris DX-1]
 gi|315601666|gb|ADU44201.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris DX-1]
          Length = 633

 Score = 47.0 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/259 (11%), Positives = 66/259 (25%), Gaps = 17/259 (6%)

Query: 59  RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
               L  Q+      +IA          K  ++      +      +        G    
Sbjct: 151 EQRYLAEQRRVALRRQIAGTITAGLEPPKTLLQALSQFQNEERAIDYLKLTDAQAGTIEA 210

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
              + L           +    + I   VV  + + K+  +           +   +   
Sbjct: 211 PSPADLAAFYDSHKAQFRAPEYRKISFLVVTPESIGKWTEVSDADARKLFDQRKDRLSTP 270

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
             R +L  +  N  + Q    K                +  ++   K  D+       + 
Sbjct: 271 EKRQILQIVFPNAEEAQAARAKI--------ASGTSFADLAQERGVKSADL---DLGLVS 319

Query: 239 ESDL--HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK 296
           +S++              N  + P   Q G   + +       G+    A ++A      
Sbjct: 320 QSEMLDPKVAAAAFALPLNEVSQPVQGQFGTVLLEVTKIEP--GKQPDYASVAANLKREL 377

Query: 297 IEKHEAEYVKKLRSNAIIH 315
            ++   + V++L     I 
Sbjct: 378 AQERARKQVQELHDK--IE 394


>gi|323466054|gb|ADX69741.1| Foldase protein prsA 1 [Lactobacillus helveticus H10]
          Length = 306

 Score = 47.0 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/287 (8%), Positives = 68/287 (23%), Gaps = 33/287 (11%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIE 91
           +  S + ++    +  G  IT       +          +  K A+  +I+    +Q+  
Sbjct: 28  AACSNSGNNATVASYKGGKITQQQYYDEMK-------KSQAGKSALANMIINRALEQQYG 80

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
           K   +   +          +      + + S        +               + +  
Sbjct: 81  KYVSSKKVD----------KQYNNYKKQYGSQFSAVLQQNGMTASTFKQNLKTNLLSEAA 130

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                   + +     +  +               +           Q +   + +S  +
Sbjct: 131 LKHIKKISKKQEQQAWKNYQPKVT------VQHILVAKKSTAESIIKQLKDGKSFKSLAK 184

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTN-PYVTQKGVEY 269
                   +  A K+             + L   F+    K      T  P  +Q G   
Sbjct: 185 KYSLDTATKNKAGKLPAFDSTD------NTLDSAFKTAAFKLKTGEVTESPAKSQSGYHV 238

Query: 270 IAICDKRDLGGEIALKAYLSAQNTPTKIEKHE--AEYVKKLRSNAII 314
           I +      G     K  +  +   +  +      + +  +   A +
Sbjct: 239 IKMISHPAKGKFADHKKAIDDEIYASMAQDQAVMKDVIATVLKKADV 285


>gi|262369234|ref|ZP_06062562.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter johnsonii SH046]
 gi|262315302|gb|EEY96341.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter johnsonii SH046]
          Length = 94

 Score = 47.0 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 8/68 (11%), Positives = 22/68 (32%), Gaps = 1/68 (1%)

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT-TNPYVTQ 264
           ++            +++++       G+   + +  L P    L+  +       P  +Q
Sbjct: 21  KKKIHDGADFAKIAKQYSTCNSAKRGGELGEVKKGQLVPAIDKLVFSAAEKVLHGPIKSQ 80

Query: 265 KGVEYIAI 272
            G   + I
Sbjct: 81  FGFHLLEI 88


>gi|254295064|ref|YP_003061087.1| hypothetical protein Hbal_2717 [Hirschia baltica ATCC 49814]
 gi|254043595|gb|ACT60390.1| hypothetical protein Hbal_2717 [Hirschia baltica ATCC 49814]
          Length = 263

 Score = 47.0 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/252 (8%), Positives = 61/252 (24%), Gaps = 26/252 (10%)

Query: 67  KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126
               +L       L+      +  +                          E+       
Sbjct: 34  NEPIKLTSQVRDRLVENFEMLEGSKAQTADI-----------QKIENDFITEELLFKEAL 82

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
                       +          +         EM     +      T + Y +R V F 
Sbjct: 83  DQGIHLTDSTTRSSLLQKIRYKISGVPATPTPEEMLEFYTEHLDYYTTEKFYSVRQVFFE 142

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
              + ++++       +  E     +     +    A           + +  +D+   F
Sbjct: 143 DKPDDIEDKLVKLNAGESVEADTYWIGDYFPEYGLSA----------LRSIFGNDISASF 192

Query: 247 QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEY 304
                 +      P+ TQ+G   + + ++ +        ++  +      TK  +    Y
Sbjct: 193 DGF---TDGVWEGPFQTQRGWHLLRVEERFEPKILPFSEVQQQIERDYQHTKNAETLDTY 249

Query: 305 VKKLRSNAIIHY 316
           +++L+    +  
Sbjct: 250 IQQLKEKYDVEI 261


>gi|125973074|ref|YP_001036984.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum ATCC 27405]
 gi|256004577|ref|ZP_05429555.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum DSM 2360]
 gi|281417269|ref|ZP_06248289.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum JW20]
 gi|125713299|gb|ABN51791.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum ATCC 27405]
 gi|255991449|gb|EEU01553.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum DSM 2360]
 gi|281408671|gb|EFB38929.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum JW20]
 gi|316940705|gb|ADU74739.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum DSM 1313]
          Length = 413

 Score = 47.0 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/268 (9%), Positives = 68/268 (25%), Gaps = 9/268 (3%)

Query: 56  ISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
           I + I  +  Q       +   ++ + E       E   +    +       ++   T  
Sbjct: 139 IEEMIRNMAEQMKLSSPSEAESRDFLKEARDFINSELKAMRITMDEYIRDTAEYMIVTDF 198

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
             +     +        ++ + L IQ   P+      +         +      +     
Sbjct: 199 MEDLTKDIVVTDEEIKKYYDEQLKIQQENPEEAAYAEVQLIQPASSRVKHILIALPEEEQ 258

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR---LPKDCNKLEKFASKIHD---- 228
           +EY          + +   +  ++     AEE   +          ++++          
Sbjct: 259 QEYQNLKSEGKDEEAEAYLKEKLEAIKPKAEEVLNKAKNGEDFEALIKEYGEDPGMESEQ 318

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKA 286
              G         +       L       ++      G   I + +K +         K+
Sbjct: 319 YKDGYTVTKNSGFIKSFEDASLALGVGEISDLVEGPYGYHIIKVYEKTEAKPYTQEEKKS 378

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            + +     K      E +K+  S + I
Sbjct: 379 EIESLLKSQKKTNFMNEKMKEWESASTI 406


>gi|269958860|ref|YP_003328649.1| putative peptidyl-prolyl cis-trans isomerase [Anaplasma centrale
           str. Israel]
 gi|269848691|gb|ACZ49335.1| putative peptidyl-prolyl cis-trans isomerase [Anaplasma centrale
           str. Israel]
          Length = 632

 Score = 47.0 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/383 (7%), Positives = 91/383 (23%), Gaps = 85/383 (22%)

Query: 10  SDFI-KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI----SKRIALLK 64
           + F+  +L       +F     V       S R    +    ++  +        +A ++
Sbjct: 5   NVFVGAVLAAVLCAFVFVTFGSVLPFGDTASDRCVAKVGSNCLSLREYSTAYQGELAYIE 64

Query: 65  LQKING---------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
                           ++++ +  +I + + ++   + G+   S ++             
Sbjct: 65  SLVHQKLSEDDIRRFGVKEMTLNRMIDDMVLEKFARELGLRVSSKSIRDLIGDMPMFQDK 124

Query: 116 SAEDFS--------------------------------SFLDKQGIGDNHFKQYLAIQSI 143
           S +                                       + G   + +    A   +
Sbjct: 125 SGKLDERRFKDLLSDAGMTEASYIGKVRGSLPAFMLSECIFPRSGAVYSQYYDGFAQDVL 184

Query: 144 WPDVVKNDFM----------LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
              +                      + ++ A   +                 +  ++  
Sbjct: 185 RGIMQSRIVDVVEISPSAVENTPTPTDNDLEAMYSEGTRNGELVMPEYRSAKYMIVSEDD 244

Query: 194 NQGFVQKRIKDAEESRLRLPKD---------CNKLEKFASKIHDVSIGK----------- 233
               V     + E                   +   +  +    +  GK           
Sbjct: 245 ALEEVTASDDEVESEIKNSELHDQRDVLNLVFSSESEADAASQALKGGKTFEAVVKDAGT 304

Query: 234 ------AQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEI--AL 284
                  + + +  L  + ++ +   +    +  + +  G   + I ++  +  E    L
Sbjct: 305 TVEAITLKNVTKELLPVEVRSAVFGLNDGEVSGVFRSVVGWHIMKILNRHPISKEDLKKL 364

Query: 285 KAYLSAQNTPTKIEKHEAEYVKK 307
           K  ++A     K  +  +  ++K
Sbjct: 365 KERVAASIKRQKARELFSAGIRK 387


>gi|225678868|gb|EEH17152.1| peptidyl-prolyl cis-trans isomerase pin1 [Paracoccidioides
           brasiliensis Pb03]
          Length = 140

 Score = 47.0 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/92 (9%), Positives = 23/92 (25%), Gaps = 1/92 (1%)

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           R   +   +     +  ++   +  E  R       +     +        G   +    
Sbjct: 46  RPSSWREAEITRSKEEALEILRRHEESIRSGEKTLGDIAMSESDCSSARKRGDLGFFGRG 105

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
           ++  +F+           +    T  GV  I 
Sbjct: 106 EMQAEFEEAAFALEPGQLSGIVETASGVHLIE 137


>gi|240080666|ref|ZP_04725209.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           FA19]
 gi|268596788|ref|ZP_06130955.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268550576|gb|EEZ45595.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
          Length = 512

 Score = 47.0 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/309 (9%), Positives = 81/309 (26%), Gaps = 22/309 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +F S+  +         LI    V           +     +  E I++  I+  +   +
Sbjct: 1   MFHSIEKYRTPAQVLLGLIALTFVGFGVSTVSHPGADYIVQVGDEKISEHSINNAMQNEQ 60

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                        Q L+     KQ  +  GI+  S  +    V        + +   + L
Sbjct: 61  A-DGGSPWRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIVDDPNFHDANGKFSHALL 119

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            +     +  +     +      ++N          + +   + +      +        
Sbjct: 120 SQYLSQRHMSEDQFVEEIRDQFALQNLV--SLVQNGVLVGDAQAEQLIRLTQVNRTIRSH 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
              PD  +      +  ++    +  +       ++     ++       Q + E+++  
Sbjct: 178 TFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEVKN 237

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            F+  + +   +   P                        KA +  +    K      + 
Sbjct: 238 AFEERVARLPAHEAKP-------------------SFEQEKAAVENELKMKKAVADFNKA 278

Query: 305 VKKLRSNAI 313
            +KL  +A 
Sbjct: 279 KEKLGDDAF 287


>gi|312867264|ref|ZP_07727474.1| putative peptidylprolyl isomerase PrsA1 [Streptococcus
           parasanguinis F0405]
 gi|311097393|gb|EFQ55627.1| putative peptidylprolyl isomerase PrsA1 [Streptococcus
           parasanguinis F0405]
          Length = 314

 Score = 47.0 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/310 (9%), Positives = 87/310 (28%), Gaps = 36/310 (11%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMS-SRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +    V     ++ +V+  + A   ++   T+ G+ I+  D    I          +  +
Sbjct: 1   MKKKLVAGAVTLLSVVTLAACANGTNKDVVTMKGDAISVSDFYDEIK-------TNQGAQ 53

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             + ++ +  + ++E        + +         A+      + F ++L +QG+ +   
Sbjct: 54  QVLFQMTINKVFEKEYGSKVSDKEVDKEL------AKQKKQLGKQFDAYLAQQGLTEETA 107

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
           K+ +    +    V           + +                +   ++    ++K + 
Sbjct: 108 KKQIRSNMLLEYAVNQAAKKDIKESDYKAAFESY-------TPEVTAQIIKLNSEDKAKE 160

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ 254
                K          +        +    ++   S                +   K  +
Sbjct: 161 VLEAAKAEGADFAQIAKDNSTDTATKDKGGEVKFDSG------TAGIPSQVKEAAFKLDE 214

Query: 255 NNTTNPYVTQKG------VEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEK--HEAEYV 305
           N  ++      G         + +  K + G +    +  L       + +   +    +
Sbjct: 215 NGISDVITVSAGQNYSASYYIVKLNKKTEKGSDWKKYEKRLKEIIVDGRKQDTNYIRSII 274

Query: 306 KKLRSNAIIH 315
            K  +NA I 
Sbjct: 275 AKAMTNANIK 284


>gi|221215713|ref|ZP_03588674.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans CGD1]
 gi|221164415|gb|EED96900.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           multivorans CGD1]
          Length = 134

 Score = 47.0 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 33/120 (27%), Gaps = 13/120 (10%)

Query: 209 RLRLPKDCNKLEKFASKIHDVSIGKAQYL---------LESDLHPQFQNLLKKSQNNTTN 259
                   +   +++      S G+  ++             L       L+K       
Sbjct: 14  LKAGKSFESLARQYSIAPSRDSGGELPWVSFKTPATEGKTGGLPVAVAQALEKLPVGAVT 73

Query: 260 P--YVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                       + +  KR   +      +A +  Q     +EK  A++V  L  NA I 
Sbjct: 74  VDSIPADALRVIVKLDAKRTTQVPSFNQAQATIRRQLETLALEKASAQFVGTLLKNATIQ 133


>gi|312890294|ref|ZP_07749831.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mucilaginibacter
           paludis DSM 18603]
 gi|311297064|gb|EFQ74196.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mucilaginibacter
           paludis DSM 18603]
          Length = 704

 Score = 47.0 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 28/106 (26%)

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGK 233
           +      R +L SI       +   +           +             K   V  G 
Sbjct: 346 SPDSVKARHILISIQAEGSPEKAVAKADSLKKLIQSGKKTFAELAPLNSIDKGSAVKGGD 405

Query: 234 AQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
                   + P F++ +   +        +Q GV  I I D++   
Sbjct: 406 LGTFARGSMIPVFEDAVFNGKKGDIKIVTSQYGVHLIEILDQKGSS 451


>gi|85708717|ref|ZP_01039783.1| peptidyl-prolyl isomerase [Erythrobacter sp. NAP1]
 gi|85690251|gb|EAQ30254.1| peptidyl-prolyl isomerase [Erythrobacter sp. NAP1]
          Length = 645

 Score = 47.0 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 42/158 (26%), Gaps = 12/158 (7%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD----ISKRIALLK 64
           L  FI  L    +      +   +             + GE IT  +    ++  +   +
Sbjct: 15  LPIFIGFLVLVALAFAASDISGSATFGGLTGDDKVAVVGGEPITSNEMSGAMNNALDRAR 74

Query: 65  LQKINGELEKIA--------VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            Q     + ++         ++ LI      Q  ++ G+    N VN   +Q      ++
Sbjct: 75  DQNPTITMPQLVANDGLNRELELLIDRFAIGQFAQEYGLRAGENLVNSEILQIGAFRNVT 134

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
            E   +               L        + +     
Sbjct: 135 GEFDQATYQAALRRQGITDAILRKDIADGLLAQQLLRP 172


>gi|194098675|ref|YP_002001737.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           NCCP11945]
 gi|240016542|ref|ZP_04723082.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           FA6140]
 gi|240112969|ref|ZP_04727459.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           MS11]
 gi|240118019|ref|ZP_04732081.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           PID1]
 gi|240123573|ref|ZP_04736529.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           PID332]
 gi|240125755|ref|ZP_04738641.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           SK-92-679]
 gi|240128277|ref|ZP_04740938.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|260440465|ref|ZP_05794281.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           DGI2]
 gi|268599050|ref|ZP_06133217.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae MS11]
 gi|268603732|ref|ZP_06137899.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID1]
 gi|268682203|ref|ZP_06149065.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID332]
 gi|268684354|ref|ZP_06151216.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268686675|ref|ZP_06153537.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291043765|ref|ZP_06569481.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|193933965|gb|ACF29789.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           NCCP11945]
 gi|268583181|gb|EEZ47857.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae MS11]
 gi|268587863|gb|EEZ52539.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID1]
 gi|268622487|gb|EEZ54887.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID332]
 gi|268624638|gb|EEZ57038.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268626959|gb|EEZ59359.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291012228|gb|EFE04217.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 512

 Score = 47.0 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/309 (9%), Positives = 81/309 (26%), Gaps = 22/309 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +F S+  +         LI    V           +     +  E I++  I+  +   +
Sbjct: 1   MFHSIEKYRTPAQVLLGLIALTFVGFGVSTVSHPGADYIVQVGDEKISEHSINNAMQNEQ 60

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                        Q L+     KQ  +  GI+  S  +    V        + +   + L
Sbjct: 61  A-DGGSPWRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIVDDPNFHDANGKFSHALL 119

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            +     +  +     +      ++N          + +   + +      +        
Sbjct: 120 SQYLSQRHMSEDQFVEEIRDQFALQNLV--SLVQNGVLVGDAQAEQLIRLTQVNRTIRSH 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
              PD  +      +  ++    +  +       ++     ++       Q + E+++  
Sbjct: 178 TFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEVKN 237

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            F+  + +   +   P                        KA +  +    K      + 
Sbjct: 238 AFEERVARLPAHEAKP-------------------SFEQEKAAVENELKMKKAVADFNKA 278

Query: 305 VKKLRSNAI 313
            +KL  +A 
Sbjct: 279 KEKLGDDAF 287


>gi|59801181|ref|YP_207893.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           FA 1090]
 gi|240115723|ref|ZP_04729785.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           PID18]
 gi|268601403|ref|ZP_06135570.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID18]
 gi|59718076|gb|AAW89481.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           FA 1090]
 gi|268585534|gb|EEZ50210.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID18]
          Length = 512

 Score = 47.0 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/309 (9%), Positives = 81/309 (26%), Gaps = 22/309 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +F S+  +         LI    V           +     +  E I++  I+  +   +
Sbjct: 1   MFHSIEKYRTPAQVLLGLIALTFVGFGVSTVSHPGADYIVQVGDEKISEHSINNAMQNEQ 60

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                        Q L+     KQ  +  GI+  S  +    V        + +   + L
Sbjct: 61  A-DGGSPWRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIVDDPNFHDANGKFSHALL 119

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            +     +  +     +      ++N          + +   + +      +        
Sbjct: 120 SQYLSQRHMSEDQFVEEIRDQFALQNLV--SLVQNGVLVGDAQAEQLIRLTQVNRTIRSH 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
              PD  +      +  ++    +  +       ++     ++       Q + E+++  
Sbjct: 178 TFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEVKN 237

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            F+  + +   +   P                        KA +  +    K      + 
Sbjct: 238 AFEERVARLPAHEAKP-------------------SFEQEKAAVENELKMKKAVADFNKA 278

Query: 305 VKKLRSNAI 313
            +KL  +A 
Sbjct: 279 KEKLGDDAF 287


>gi|293399048|ref|ZP_06643213.1| peptidyl-prolyl cis-trans isomerase D [Neisseria gonorrhoeae F62]
 gi|291610462|gb|EFF39572.1| peptidyl-prolyl cis-trans isomerase D [Neisseria gonorrhoeae F62]
          Length = 512

 Score = 47.0 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/309 (9%), Positives = 80/309 (25%), Gaps = 22/309 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +F S+  +         LI    V           +     +  E I++  I+  +   +
Sbjct: 1   MFHSIEKYRTPAQVLLGLIALTFVGFGVSTVSHPGADYIVQVGDEKISEHSINNAMQNEQ 60

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                        Q L+     KQ  +  GI+  S  +             + +   + L
Sbjct: 61  A-DGGSPWRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIADDPNFHDANGKFSHALL 119

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            +     +  +     +      ++N          + +   + +      +        
Sbjct: 120 SQYLSQRHMSEDQFVEEIRDQFALQNLV--SLVQNGVLVGDAQAEQLIRLTQVNRTIRSH 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
              PD  +      +  ++    +  +       ++     ++       Q + E+++  
Sbjct: 178 TFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEVKN 237

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            F+  + +   +   P                        KA +  +    K      + 
Sbjct: 238 AFEERVARLPAHEAKP-------------------SFEQEKAAVENELKMKKAVADFNKA 278

Query: 305 VKKLRSNAI 313
            +KL  +A 
Sbjct: 279 KEKLGDDAF 287


>gi|302406618|ref|XP_003001145.1| peptidyl-prolyl cis-trans isomerase PIN4 [Verticillium albo-atrum
           VaMs.102]
 gi|261360403|gb|EEY22831.1| peptidyl-prolyl cis-trans isomerase PIN4 [Verticillium albo-atrum
           VaMs.102]
          Length = 131

 Score = 46.6 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 6/77 (7%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN- 259
           + ++A        K  +   +F+        G   +     L P F+ +    + ++T  
Sbjct: 44  KKEEALAKIRDGAKFDDVAREFSED-KARQGGSLGWKSRGSLDPAFEEVAFGLEASSTGS 102

Query: 260 P----YVTQKGVEYIAI 272
           P      T  G   I +
Sbjct: 103 PKWGEAKTGFGYHIIMV 119


>gi|171910549|ref|ZP_02926019.1| hypothetical protein VspiD_05235 [Verrucomicrobium spinosum DSM
           4136]
          Length = 297

 Score = 46.6 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 53/242 (21%), Gaps = 14/242 (5%)

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           LI          K G T                     E+           D        
Sbjct: 41  LITVNAATVTRLKEGWTRQFQRAPDADDMRGMVEAHIREEVLCREALAIGLDRDDTIVRR 100

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK-----LQN 194
             +   + +  D        E  I A  +K          +          K       N
Sbjct: 101 RLAQKMEFLTQDIATSAPPDEASINAFFKKNAGRYAPPARVSFRHVYFSREKRGEKLDAN 160

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ 254
                  ++D   S         +  +++++      G       + L    ++      
Sbjct: 161 AKEALAALQDGNASDEDFGDAFLQPFEYSNQSEADIAGIFGREFAAALMKSPESTWL--- 217

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEI--ALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
                P  +  GV  + I             ++  +       +      E +++++ N 
Sbjct: 218 ----GPVASTYGVHLVRITGSHASPPTELGKVREQVLRDLVDERRRTANEEVLQQMKKNY 273

Query: 313 II 314
            I
Sbjct: 274 EI 275


>gi|239998983|ref|ZP_04718907.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           35/02]
 gi|268594831|ref|ZP_06128998.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268548220|gb|EEZ43638.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|317164277|gb|ADV07818.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 512

 Score = 46.6 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/309 (9%), Positives = 81/309 (26%), Gaps = 22/309 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +F S+  +         LI    V           +     +  E I++  I+  +   +
Sbjct: 1   MFHSIEKYRTPAQVLLGLIALTFVGFGVSTVSHPGADYIVQVGDEKISEHSINNAMQNEQ 60

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                        Q L+     KQ  +  GI+  S  +    V        + +   + L
Sbjct: 61  A-DGGSPWRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIVDDPNFHDANGKFSHALL 119

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            +     +  +     +      ++N          + +   + +      +        
Sbjct: 120 SQYLSQRHMSEDQFVEEIRDQFALQNLV--SLVQNGVLVGDAQAEQLIRLTQVNRTIRSH 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
              PD  +      +  ++    +  +       ++     ++       Q + E+++  
Sbjct: 178 TFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEVKN 237

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            F+  + +   +   P                        KA +  +    K      + 
Sbjct: 238 AFEERVARLPAHEAKP-------------------SFEQEKAAVENELKMKKAVADFNKA 278

Query: 305 VKKLRSNAI 313
            +KL  +A 
Sbjct: 279 KEKLGDDAF 287


>gi|329765286|ref|ZP_08256866.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329138192|gb|EGG42448.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 92

 Score = 46.6 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 20/77 (25%), Gaps = 2/77 (2%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
             Q       E   +  K     ++ +         G   Y  +  +   F+    K   
Sbjct: 13  EKQSEAIAICERIKKGEKFGKLAKELSIDTGSAKKDGSLGYFTKGMMVKPFEEAAFKLQI 72

Query: 255 NNTTNPYVTQKGVEYIA 271
              + P  ++ G   I 
Sbjct: 73  GEMSEPVKSEFGYHIIK 89


>gi|240014107|ref|ZP_04721020.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           DGI18]
 gi|240121669|ref|ZP_04734631.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
           PID24-1]
 gi|254493775|ref|ZP_05106946.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 1291]
 gi|226512815|gb|EEH62160.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 1291]
          Length = 512

 Score = 46.6 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/309 (9%), Positives = 81/309 (26%), Gaps = 22/309 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +F S+  +         LI    V           +     +  E I++  I+  +   +
Sbjct: 1   MFHSIEKYRTPAQVLLGLIALTFVGFGVSTVSHPGADYIVQVGDEKISEHSINNAMQNEQ 60

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                        Q L+     KQ  +  GI+  S  +    V        + +   + L
Sbjct: 61  A-DGGSPWRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIVDDPNFHDANGKFSHALL 119

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            +     +  +     +      ++N          + +   + +      +        
Sbjct: 120 SQYLSQRHMSEDQFVEEIRDQFALQNLV--SLVQNGVLVGDAQAEQLIRLTQVNRTIRSH 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
              PD  +      +  ++    +  +       ++     ++       Q + E+++  
Sbjct: 178 TFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEVKN 237

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            F+  + +   +   P                        KA +  +    K      + 
Sbjct: 238 AFEERVARLPAHEAKP-------------------SFEQEKAAVENELKMKKAVADFNKA 278

Query: 305 VKKLRSNAI 313
            +KL  +A 
Sbjct: 279 KEKLGDDAF 287


>gi|325130315|gb|EGC53082.1| hypothetical protein NMBOX9930304_0938 [Neisseria meningitidis
           OX99.30304]
          Length = 512

 Score = 46.6 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/309 (10%), Positives = 82/309 (26%), Gaps = 22/309 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +F S+  +         LI    V           +     +  E I+D  I+  +   +
Sbjct: 1   MFHSIEKYRTPAQVLLGLIALTFVGFGVSTVSHPGADYIVQVGDEKISDHSINNAMQNEQ 60

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                        Q L+     KQ  +  GI+  S  +    V        + +   + L
Sbjct: 61  A-DGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFDHALL 119

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           ++     +  +     +      ++N          + +   + +      +        
Sbjct: 120 NRYLSQRHMSEDQFVEEIRDQFALQNLV--NLVQNGVLVGDAQAEQLIRLTQVNRTIRSH 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
              PD  +      +  ++    +  +       ++     ++       Q + E+++  
Sbjct: 178 TFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEVKN 237

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            F+  + +   N   P                        KA +  +    K      + 
Sbjct: 238 AFEERVARLPTNEAKP-------------------SFEQEKAAVENELKMKKAVADFNKA 278

Query: 305 VKKLRSNAI 313
            +KL  +A 
Sbjct: 279 KEKLGDDAF 287


>gi|193214031|ref|YP_001995230.1| hypothetical protein Ctha_0312 [Chloroherpeton thalassium ATCC
           35110]
 gi|193087508|gb|ACF12783.1| hypothetical protein Ctha_0312 [Chloroherpeton thalassium ATCC
           35110]
          Length = 287

 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/298 (9%), Positives = 79/298 (26%), Gaps = 28/298 (9%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
           VL +  +  +VS      +  +   +    +T  ++   I               A+   
Sbjct: 12  VLFLCVLFGMVSACESNSADSVVAKVGESNLTLSELQASIQYA---SPKDSATAAAI--Y 66

Query: 81  IVETLKKQEIEKSGITFDSNTVN-YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           I +      +       +  +      +       +  + F     K+      F+    
Sbjct: 67  IEDWKHTAALYDLACQANIESDPLAQVLLEKAKRRIFVQRFVDIEMKKAEAKGAFRVDSI 126

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
             S + ++ K +F+ +   +++      +   + +     +   L +   +  +     +
Sbjct: 127 EVSAYYEMHKQEFVYREPAVKL-----IRLYASSSDSATRMARALGNRRFSFDELVSEAK 181

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN 259
               + +       +D  +  + +    +  +               Q L K   +N + 
Sbjct: 182 IIAPELDTLNTHALQDSEEFVRISRLHLESDV-------------LQQLLEKMRPSNISP 228

Query: 260 PYVTQKGVEYIAICDKR----DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
                  +  +   + R          A    +  +    K      E  K+ R  A 
Sbjct: 229 IVKLNDSLFVVMRLETRVETGTEKPLEAAYDEIKQRLKLKKQNAFYIELQKRARKAAQ 286


>gi|126737880|ref|ZP_01753610.1| hypothetical protein RSK20926_19602 [Roseobacter sp. SK209-2-6]
 gi|126721273|gb|EBA17977.1| hypothetical protein RSK20926_19602 [Roseobacter sp. SK209-2-6]
          Length = 613

 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/405 (7%), Positives = 92/405 (22%), Gaps = 98/405 (24%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
              LS     +    +++       V++     S      +  E ++  +  + +   + 
Sbjct: 5   MKQLSKTFVWILMGMLIVGLAGFGAVNFSGSVSS---VALVGDEEVSVEEYFRELQREQR 61

Query: 66  QKINGE-------------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
                              L++  +  LI       E+   GI+     +     Q    
Sbjct: 62  SLQQQTGQVVTLAQMTAFGLDRAVLGRLISLAALDNEVNSLGISIGDENLLDELTQIPSF 121

Query: 113 TG----LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML-------------- 154
            G       E +   L    + +  F+  L  ++    V                     
Sbjct: 122 QGPSGNFDREAYRFALQNANLTEAEFEADLRKEAARTLVQGAIISNAEMPSTLADTLTKY 181

Query: 155 --------------------KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK--- 191
                               +    + E+ +  +            +     +  +    
Sbjct: 182 IGARRSFSYVLLEPAQFSLIQIVPDDAELKSFYEANPEAFRLPETKQITYARLSPDMILD 241

Query: 192 ---------LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG---------- 232
                           + + +  E   +      ++     +     +            
Sbjct: 242 GIEVDAEALKALYEERKDQYQVPERRLVERLVFSDQAAADRATADLQAGTVTFEELVGNR 301

Query: 233 -------KAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIA 283
                      + + DL    + +   +  + ++P  +  G     I  + D       A
Sbjct: 302 GLDLQDIDMGDVTKEDLGAAAEGVFAAAVGSVSSPLPSDLGPAIFRINGQLDARITSFEA 361

Query: 284 LKAYLSAQNTPTKIEKHEAEY-------------VKKLRSNAIIH 315
            +A L  +    +  +   +              +++L+  A + 
Sbjct: 362 AEAELRQELAADRARRVIEQQAESIDDILAGGATLEELKDEADME 406


>gi|121634931|ref|YP_975176.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
           meningitidis FAM18]
 gi|120866637|emb|CAM10388.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
           meningitidis FAM18]
 gi|325132578|gb|EGC55271.1| hypothetical protein NMBM6190_0987 [Neisseria meningitidis M6190]
 gi|325138351|gb|EGC60920.1| hypothetical protein NMBES14902_1084 [Neisseria meningitidis
           ES14902]
 gi|325142491|gb|EGC64895.1| hypothetical protein NMB9615945_0995 [Neisseria meningitidis
           961-5945]
 gi|325198371|gb|ADY93827.1| conserved hypothetical protein [Neisseria meningitidis G2136]
          Length = 512

 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/309 (10%), Positives = 82/309 (26%), Gaps = 22/309 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +F S+  +         LI    V           +     +  E I+D  I+  +   +
Sbjct: 1   MFHSIEKYRTPAQVLLGLIALTFVGFGVSTVSHPGADYIVQVGDEKISDHSINNAMQNEQ 60

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                        Q L+     KQ  +  GI+  S  +    V        + +   + L
Sbjct: 61  A-DGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFDHALL 119

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           ++     +  +     +      ++N          + +   + +      +        
Sbjct: 120 NRYLSQRHMSEDQFVEEIRDQFALQNLV--NLVQNGVLVGDAQAEQLIRLTQVNRTIRSH 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
              PD  +      +  ++    +  +       ++     ++       Q + E+++  
Sbjct: 178 TFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEVKN 237

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            F+  + +   N   P                        KA +  +    K      + 
Sbjct: 238 AFEERVARLPANEAKP-------------------SFEQEKAAVENELKMKKAVADFNKA 278

Query: 305 VKKLRSNAI 313
            +KL  +A 
Sbjct: 279 KEKLGDDAF 287


>gi|304322121|ref|YP_003855764.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Parvularcula
           bermudensis HTCC2503]
 gi|303301023|gb|ADM10622.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Parvularcula
           bermudensis HTCC2503]
          Length = 326

 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 51/174 (29%), Gaps = 13/174 (7%)

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
             + +    +      +     ++     ++      R  ++R +L     +  +    V
Sbjct: 138 RRRILSSAYLDQAIKREVSETHLKAAYAAEQRAAAADRRVVMRRLLV----SSEKEALSV 193

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNT 257
            +RI+          +     E  +S       G       S L     + +        
Sbjct: 194 ARRIQTGIPFGDMARRVSLDFETRSSA------GLLPPTRVSQLPTPIGETVAALPLGTV 247

Query: 258 TNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           + P  T++G   + +  + ++   I     L  +       K  A+ V K R+ 
Sbjct: 248 SAPVATEEGWYLLIVESRNEVK--IPPYEELRPRLMAELQRKTLAQTVAKARNR 299


>gi|17537729|ref|NP_494393.1| hypothetical protein Y110A2AL.13 [Caenorhabditis elegans]
          Length = 168

 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/98 (12%), Positives = 24/98 (24%), Gaps = 6/98 (6%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR-----LPKDCNKLEKFASKIHDVSIGKA 234
            R+   +   +   N            E  L+       K     ++F+        G  
Sbjct: 68  WRSDHITRSKDDAINILKSADLRNFHYEKELKDASNIEGKFRELAKQFSDCSSAKRGGDL 127

Query: 235 QYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                  +   F++          ++   T  GV  I 
Sbjct: 128 GPFERRQMQKPFEDASFALEIGEMSDIVDTSSGVHLIY 165


>gi|15677110|ref|NP_274262.1| peptidyl-prolyl cis-trans isomerase-related protein [Neisseria
           meningitidis MC58]
 gi|7226478|gb|AAF41619.1| peptidyl-prolyl cis-trans isomerase-related protein [Neisseria
           meningitidis MC58]
 gi|316985097|gb|EFV64050.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis H44/76]
 gi|325140532|gb|EGC63053.1| hypothetical protein NMBCU385_0927 [Neisseria meningitidis CU385]
 gi|325200131|gb|ADY95586.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
          Length = 512

 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/309 (11%), Positives = 83/309 (26%), Gaps = 22/309 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +F S+  +         LI    V           +     +  E I+D  I+  I   +
Sbjct: 1   MFHSIEKYRTPAQVLLGLIALTFVGFGVSTVSHPGADYIVQVGDEKISDHSINNAIQNEQ 60

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                G       Q L+     KQ  +  GI+  S  +    V        + +   + L
Sbjct: 61  A-DGGGPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFDHALL 119

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           ++     +  +     +      ++N          + +   + +      +        
Sbjct: 120 NRYLSQRHMSEDQFVEEIRDQFALQNLV--NLVQNGVLVGDAQAEQLIRLTQVNRTIRSH 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
              PD  +      +  ++    +  +       ++     ++       Q + E+++  
Sbjct: 178 TFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEVKN 237

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            F+  + +   N   P                        KA +  +    K      + 
Sbjct: 238 AFEERVARLPANEAKP-------------------SFEQEKAAVENELKMKKAVADFNKA 278

Query: 305 VKKLRSNAI 313
            +KL  +A 
Sbjct: 279 KEKLGDDAF 287


>gi|261392500|emb|CAX50051.1| putative peptidyl-prolyl cis-trans isomerase D (PPIase D; rotamase
           D) [Neisseria meningitidis 8013]
          Length = 512

 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/309 (10%), Positives = 82/309 (26%), Gaps = 22/309 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +F S+  +         LI    V           +     +  E I+D  I+  +   +
Sbjct: 1   MFHSIEKYRTPAQVLLGLIALTFVGFGVSTVSHPGADYIVQVGDEKISDHSINNAMQNEQ 60

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                        Q L+     KQ  +  GI+  S  +    V        + +   + L
Sbjct: 61  A-GGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFDHALL 119

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           ++     +  +     +      ++N          + +   + +      +        
Sbjct: 120 NRYLSQRHMSEDQFVEEIRDQFALQNLV--NLVQNGVLVGDAQAEQLIRLTQVNRTIRSH 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
              PD  +      +  ++    +  +       ++     ++       Q + E+++  
Sbjct: 178 TFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEVKN 237

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            F+  + +   N   P                        KA +  +    K      + 
Sbjct: 238 AFEERVARLPANEAKP-------------------SFEQEKAAVENELKMKKAVADFNKA 278

Query: 305 VKKLRSNAI 313
            +KL  +A 
Sbjct: 279 KEKLGDDAF 287


>gi|307942204|ref|ZP_07657555.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseibium sp.
           TrichSKD4]
 gi|307774490|gb|EFO33700.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseibium sp.
           TrichSKD4]
          Length = 635

 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/221 (7%), Positives = 51/221 (23%), Gaps = 14/221 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVI--------T 52
           M   +      ++  +    ++  F +  +    S    +     +    I         
Sbjct: 1   MLDALRKGAGTWVAKIFIALLVFSFAVWGVADVFSGFGQNT-VAKVGETEIATVAFDRAY 59

Query: 53  DGDISKRIALLKLQKINGE-----LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
             D+++    L       E     + +  +  +I E    +   +  +    + +     
Sbjct: 60  RQDLNRFGRQLGRPLSTTEGAQFGIPQQTLGRMIAEAALNETGRELNLGISDDHLAGIIQ 119

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
                         + L +        +    IQ       +       G++       +
Sbjct: 120 NDPNFRRAGGGYDRALLAQVLRNIGMSEDEYVIQQREFAERQQIAQAVSGDMPAPTAYLE 179

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
                      +   VL +    ++++           E  
Sbjct: 180 VLNAYENETRDISLIVLTAEQVGEIEDPDQAALEAYFEENK 220


>gi|163760078|ref|ZP_02167161.1| peptidyl-prolyl cis-trans isomerse D [Hoeflea phototrophica DFL-43]
 gi|162282477|gb|EDQ32765.1| peptidyl-prolyl cis-trans isomerse D [Hoeflea phototrophica DFL-43]
          Length = 651

 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/174 (9%), Positives = 46/174 (26%), Gaps = 14/174 (8%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI---- 56
           M   +      ++       ++  F +  I      A  S +  T+    ++  +     
Sbjct: 23  MLDTLRKGAKSWVAQFLLVLLVASFAVWGISGSILNAGGSAVV-TVGDTEVSPNEFRLAY 81

Query: 57  SKRIALLKLQKINGELEKIAV---------QELIVETLKKQEIEKSGITFDSNTVNYFFV 107
            +++A +  Q      ++ A           +LI   L  ++  +  +    + +     
Sbjct: 82  DRQMAAVGQQLGTRLTQEQARAFGIENQVYSQLIAGALLDEQAREMNLGLSDSRLAALIA 141

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
           Q A     ++    S   +        ++          V            + 
Sbjct: 142 QDAAFHDFNSRFDRSIFRRVLNSVGMSEEDYIRSRSQVAVRTQIVEAVAEGFDA 195


>gi|218768240|ref|YP_002342752.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
           meningitidis Z2491]
 gi|121052248|emb|CAM08573.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
           meningitidis Z2491]
 gi|254670088|emb|CBA04992.1| peptidyl-prolyl cis-trans isomerse D [Neisseria meningitidis
           alpha153]
 gi|325204222|gb|ADY99675.1| conserved hypothetical protein [Neisseria meningitidis M01-240355]
          Length = 512

 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/309 (11%), Positives = 83/309 (26%), Gaps = 22/309 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +F S+  +         LI    V           +     +  E I+D  I+  I   +
Sbjct: 1   MFHSIEKYRTPAQVLLGLIALTFVGFGVSTVSHPGADYIVQVGDEKISDHSINNAIQNEQ 60

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                G       Q L+     KQ  +  GI+  S  +    V        + +   + L
Sbjct: 61  A-DGGGPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFDHALL 119

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           ++     +  +     +      ++N          + +   + +      +        
Sbjct: 120 NRYLSQRHMSEDQFVEEIRDQFALQNLV--NLVQNGVLVGDAQAEQLIRLTQVNRTIRSH 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
              PD  +      +  ++    +  +       ++     ++       Q + E+++  
Sbjct: 178 TFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEVKN 237

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            F+  + +   N   P                        KA +  +    K      + 
Sbjct: 238 AFEERVARLPANEAKP-------------------SFEQEKAAVENELKMKKAVADFNKA 278

Query: 305 VKKLRSNAI 313
            +KL  +A 
Sbjct: 279 KEKLGDDAF 287


>gi|119513160|ref|ZP_01632209.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nodularia spumigena
           CCY9414]
 gi|119462181|gb|EAW43169.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nodularia spumigena
           CCY9414]
          Length = 252

 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/265 (11%), Positives = 69/265 (26%), Gaps = 28/265 (10%)

Query: 45  TINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           T+N + I    I++ +  L+            +++ ++E   +    +  I         
Sbjct: 8   TVNDQPIF---INQAVKYLQASGKLAHFIGDILRQYVIEQEIQ---NRDDIQISPALTEQ 61

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
             +       L+         +Q   D                    F  K   L++ I 
Sbjct: 62  TIIDFRLKNQLNDPQTFQEWLQQNATDYATFYESIA-----------FSFKLEKLKVLIA 110

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
             K     I  + +L R ++  I  +  +    +Q                    ++++ 
Sbjct: 111 EPKISEYFIERKIFLDRVIVSRIIVDNQEIAEELQ-------TQIEEGGSFEQLAKEYSL 163

Query: 225 KIHDVSIGKAQYLLESDLHPQFQ-NLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIA 283
               +  G    +    +  Q +  +   +      P   +       +        E  
Sbjct: 164 SEDRMVNGMMGPVSRGTMPDQLRAVIDIANPGKVVGPIEIEGRYGLFRVEQFLPASLEDM 223

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKKL 308
               L         EK   E ++KL
Sbjct: 224 ---QLKQALQNELFEKWLVEKIQKL 245


>gi|75676027|ref|YP_318448.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter
           winogradskyi Nb-255]
 gi|74420897|gb|ABA05096.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter
           winogradskyi Nb-255]
          Length = 636

 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/168 (10%), Positives = 47/168 (27%), Gaps = 16/168 (9%)

Query: 1   MTSKVFTSLSDFI-KLLTTYFVLIIFCIVPIVSYKSW--AMSSRIRTTINGEVITDGDIS 57
           M   +  + S+++ K L T  + ++     I                T+ G  I+     
Sbjct: 1   MLRGIRNASSNWLGKTLMTIVMGLLIVAFGIWGIADIFHGFGQSALATVGGTEISTEQFR 60

Query: 58  KRIALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           +       Q                  L++  +Q++I E    ++ ++ G+      +  
Sbjct: 61  QIYNDRLQQIGRQFGRPLPPDQVRALGLDRQILQQVIAEAALDEDAQRKGLKVSDEEIGR 120

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
                    G +    ++          + +Q    +     + +   
Sbjct: 121 QIKSDPNFKGANNAFDAARFAGLIRQLGYTEQRYVAEQRNMALRRQIV 168



 Score = 38.5 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/255 (7%), Positives = 61/255 (23%), Gaps = 15/255 (5%)

Query: 59  RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
               +  Q+      +I           K  +E      +      +    A   G    
Sbjct: 151 EQRYVAEQRNMALRRQIVGTMTAGVEPSKTLLEALNRFQNEQRTIDYVKLGAAQAGTIDP 210

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
             +  L           +    + +   V+  + + K+  +  +      + +   +   
Sbjct: 211 PTADQLSGYFDAHKVQFRAPEYRKVAFVVLTPEEVAKWTAVSDDDARKIYEERKDKLSTP 270

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
             R +   +  +    Q   +K                +   +      D+       + 
Sbjct: 271 ERRQLRQIMFPSVTDAQAAREKI--------AGGASFDDIARERGLATSDI---DLGTIS 319

Query: 239 ESDL--HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK 296
           ++++            + +  + P   + GV  I +   R   G       ++ +     
Sbjct: 320 KAEIIDPAIANAAFSINSDEVSQPTQGRFGVALIKV--GRIEPGNQPTYESVAEKLKRDV 377

Query: 297 IEKHEAEYVKKLRSN 311
                   +  L + 
Sbjct: 378 ALDRARAEINNLHNK 392


>gi|295698384|ref|YP_003603039.1| ppic-type ppiase domain protein [Candidatus Riesia pediculicola
           USDA]
 gi|291157251|gb|ADD79696.1| ppic-type ppiase domain protein [Candidatus Riesia pediculicola
           USDA]
          Length = 622

 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/260 (9%), Positives = 72/260 (27%), Gaps = 10/260 (3%)

Query: 62  LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
           LL+ Q     L +   +  + + + +       +    +     F+   R          
Sbjct: 132 LLRNQISGKTLSQEIKKNFLTKKVMQSYFLDEFLLPSESLEYAKFMFQKRKIQTLTLPIL 191

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
            +   Q + +   + Y         +      + Y  L++E       +K      Y   
Sbjct: 192 QYQKLQNVSEEEMEAYY-QNYPDQFLSSRKARISYIKLDIESQYENLNLKEEEFEFYKKN 250

Query: 182 TVLFSIPDNKLQNQGFVQ--KRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLL 238
              F+ P     +   +   K  +   E   +        +KF++        G   ++ 
Sbjct: 251 KKFFTNPPKNYYSMIQLDSIKDAELMIEKLSQGFSFEELAKKFSTDPFSAKKNGSIGWIE 310

Query: 239 ESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTK 296
           +  L     +   K     +     +       +     +     +  K+ +      +K
Sbjct: 311 KEFLPQVIVSANLKKIGQISKIIEFEGKYLIFRLDRSINKSYKTFLESKSEIHDILLKSK 370

Query: 297 IEKHEAE----YVKKLRSNA 312
             +   +     +++++ N+
Sbjct: 371 SSEKFYKIREFILEEIKENS 390


>gi|262371759|ref|ZP_06065038.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter junii SH205]
 gi|262311784|gb|EEY92869.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter junii SH205]
          Length = 96

 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 8/68 (11%), Positives = 22/68 (32%), Gaps = 1/68 (1%)

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT-TNPYVTQ 264
           ++            +++++       G+   + +  L P    L+  +       P  +Q
Sbjct: 21  KKRIQSGADFSKIAKQYSTCNSAKRGGELGEVKKGQLVPVIDKLVFTAAERILHGPIKSQ 80

Query: 265 KGVEYIAI 272
            G   + I
Sbjct: 81  FGFHLVEI 88


>gi|257125063|ref|YP_003163177.1| hypothetical protein Lebu_0266 [Leptotrichia buccalis C-1013-b]
 gi|257049002|gb|ACV38186.1| hypothetical protein Lebu_0266 [Leptotrichia buccalis C-1013-b]
          Length = 298

 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/303 (11%), Positives = 79/303 (26%), Gaps = 29/303 (9%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K      VL + C+  +    +   S ++                        K     
Sbjct: 1   MKNKIKIGVLTVLCVFALSCKNNAGQSGKVL------------------FESPDKQIKVY 42

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           E     EL          EK   +     +    +++       A         Q     
Sbjct: 43  ENEVNNELAKSLYSSGVDEKDLTSDQIAQMKQSIIKNIALNRALAIKGKEKKLDQDKKYT 102

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                L  Q +      N+   K    + +             R+     +   +     
Sbjct: 103 ESTDILQEQLLASLATLNEVNDKAKVTDADAKNIYDANAANFTRQEDSVRLQLIVF--NT 160

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF----QN 248
            +     + +K+A  +         K       + +   G+ Q +  + L  +F    + 
Sbjct: 161 SDSAKANQVLKEAIANPADFTSYARKYNANIQGVTEN--GETQEIPLTQLSSRFGPLNEA 218

Query: 249 LLKKSQNNTTNPYVT-QKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYV 305
           +         N  VT    +  + + ++  + L     +K  +  Q    K +  + +Y+
Sbjct: 219 IKDVKAGQIVNKVVTVGNDLYVVKVLERNGKGLIPFEKVKETIKTQLRNQKRQVEQQKYL 278

Query: 306 KKL 308
           K +
Sbjct: 279 KSI 281


>gi|22536972|ref|NP_687823.1| foldase protein PrsA [Streptococcus agalactiae 2603V/R]
 gi|46396914|sp|Q8E0C6|PRSA_STRA5 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|22533826|gb|AAM99695.1|AE014228_16 protease maturation protein, putative [Streptococcus agalactiae
           2603V/R]
          Length = 309

 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 78/301 (25%), Gaps = 30/301 (9%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
            L +  +  + +      +     T+ G+ IT  D   ++             K A Q +
Sbjct: 11  FLTLMSVATLAACSGKTSNGTNVVTMKGDTITVSDFYDQVK----------TSKAAQQSM 60

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           +   L +    + G       V+  + + A+  G S                   +    
Sbjct: 61  LTLILSRVFDTQYGDKVSDKKVSEAYNKTAKGYGNSFSSAL-------SQAGLTPEGYKQ 113

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           Q     +V+            E             + Y   T +  I  +       V K
Sbjct: 114 QIRTTMLVEYAVKEAAKKELTEA------NYKEAYKNYTPETSVQVIKLDAEDKAKSVLK 167

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP 260
            +K       ++ K+         +    S G    L +  +   F+       +  +  
Sbjct: 168 DVKADGADFAKIAKEKTTATDKKVEYKFDSAG--TTLPKEVMSAAFKLDKNGVSDVVSTV 225

Query: 261 YVTQK--GVEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEKHE--AEYVKKLRSNAIIH 315
             T        I + DK +   +  + K  L       K        + + K    A + 
Sbjct: 226 DSTTYKTSYYIIKVTDKTEKKSDWKSYKNRLKEVILKDKTSDRAFQNKVISKALEKANVK 285

Query: 316 Y 316
            
Sbjct: 286 I 286


>gi|218440506|ref|YP_002378835.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cyanothece sp. PCC
           7424]
 gi|218173234|gb|ACK71967.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cyanothece sp. PCC
           7424]
          Length = 248

 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/254 (9%), Positives = 74/254 (29%), Gaps = 31/254 (12%)

Query: 42  IRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           +   +  + IT+ D+   +   +L      +++I + + I E     E ++         
Sbjct: 3   VVLQVGEQKITESDLYPLLGQYRLL--PQLVKEIIIDQAIAEIECTPEEQQMARNL---- 56

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
                  + +N   S E   ++L +QGI     +     +       +  +  K     +
Sbjct: 57  ------FYQQNQLTSEEKIQAWLKQQGITREQLEYLSLRELKLEKFKQVTWGNKIEPYFL 110

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           +I                 +         + ++ G  Q+     ++      +     +K
Sbjct: 111 KIKG---------------KLDRVIYSLIRTKDTGIAQELYFRIQDQENTFEE---LAKK 152

Query: 222 FASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           ++      + G    +  +  HP    + +         P    + +  I +  +     
Sbjct: 153 YSQGPEAQTGGLIGPVELNVPHPTISQMLMGSQPGQLWPPTQIGEWIIIIRLEQRISTPL 212

Query: 281 EIALKAYLSAQNTP 294
           +   +  +  +   
Sbjct: 213 DQQTQQRILNELFQ 226


>gi|226951693|ref|ZP_03822157.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
           [Acinetobacter sp. ATCC 27244]
 gi|294651378|ref|ZP_06728696.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226837558|gb|EEH69941.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
           [Acinetobacter sp. ATCC 27244]
 gi|292822733|gb|EFF81618.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 96

 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 8/68 (11%), Positives = 22/68 (32%), Gaps = 1/68 (1%)

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT-TNPYVTQ 264
           ++            +++++       G+   + +  L P    L+  +       P  +Q
Sbjct: 21  KKRIQSGADFSKIAKQYSTCNSAKRGGELGEVKKGQLVPVIDKLVFSAAERVLHGPIKSQ 80

Query: 265 KGVEYIAI 272
            G   + I
Sbjct: 81  FGFHLLEI 88


>gi|290580866|ref|YP_003485258.1| putative protease maturation protein precursor [Streptococcus
           mutans NN2025]
 gi|254997765|dbj|BAH88366.1| putative protease maturation protein precursor [Streptococcus
           mutans NN2025]
          Length = 333

 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/313 (10%), Positives = 78/313 (24%), Gaps = 40/313 (12%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K  T    L+    +  ++  S    +    T+ G+ IT  D    +        +   
Sbjct: 1   MKKRTIATGLVTLLSIVTLAACSKTNQNSKIATMKGDTITVADFYNEVK------NSTAS 54

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           ++  +  L+ +  +KQ  +K      +   N     +  +   +        +       
Sbjct: 55  KQAVLSLLVSKVFEKQYGDKVSDKEVTKAYNEAAKYYGDSFSSALASRGYTKE------- 107

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                   Q     +++     +      EI     K      +  +   V+    ++K 
Sbjct: 108 ----DYKKQIRSEKLIEYAVKEEAK---KEITDASYKSAYKDYKPEVTAQVIQLDSEDKA 160

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
           ++     K          +     +K E                   +         L  
Sbjct: 161 KSVLEEAKADGADFAKIAKDNTKGDKTEYSFDSGS-----------TNLPSQVLSAALNL 209

Query: 253 SQNNTTNPYVTQKG------VEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEK--HEAE 303
            ++  ++                + I  K D   +  A K  L       K+        
Sbjct: 210 DKDGVSDVIKASDSTTYKPVYYIVKITKKTDKNADWKAYKKRLKEIIVSQKLNDSNFRNA 269

Query: 304 YVKKLRSNAIIHY 316
            + K    A +  
Sbjct: 270 VIGKAFKKANVKI 282


>gi|24379121|ref|NP_721076.1| foldase protein PrsA [Streptococcus mutans UA159]
 gi|46396905|sp|Q8CVC6|PRSA_STRMU RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|24377024|gb|AAN58382.1|AE014908_8 putative protease maturation protein precursor [Streptococcus
           mutans UA159]
          Length = 333

 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/313 (10%), Positives = 78/313 (24%), Gaps = 40/313 (12%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K  T    L+    +  ++  S    +    T+ G+ IT  D    +        +   
Sbjct: 1   MKKRTIATGLVTLLSIVTLAACSKTNQNSKIATMKGDTITVADFYNEVK------NSTAS 54

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           ++  +  L+ +  +KQ  +K      +   N     +  +   +        +       
Sbjct: 55  KQAVLSLLVSKVFEKQYGDKVSDKEVTKAYNEAAKYYGDSFSSALASRGYTKE------- 107

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                   Q     +++     +      EI     K      +  +   V+    ++K 
Sbjct: 108 ----DYKKQIRSEKLIEYAVKEEAK---KEITDASYKSAYKDYKPEVTAQVIQLDSEDKA 160

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
           ++     K          +     +K E                   +         L  
Sbjct: 161 KSVLEEAKADGADFAKIAKDNTKGDKTEYSFDSGS-----------TNLPSQVLSAALNL 209

Query: 253 SQNNTTNPYVTQKG------VEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEK--HEAE 303
            ++  ++                + I  K D   +  A K  L       K+        
Sbjct: 210 DKDGVSDVIKASDSTTYKPVYYIVKITKKTDKNADWKAYKKRLKEIIVSQKLNDSNFRNA 269

Query: 304 YVKKLRSNAIIHY 316
            + K    A +  
Sbjct: 270 VIGKAFKKANVKI 282


>gi|322707187|gb|EFY98766.1| Peptidyl-prolyl cis-trans isomerase PIN4 [Metarhizium anisopliae
           ARSEF 23]
          Length = 124

 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 26/85 (30%), Gaps = 6/85 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               + ++A        K       ++        G   +  +  L P+F+      + +
Sbjct: 41  EKHAKKEEALAKLNDGVKFDEVARNYSED-KARQGGALGWKTKGSLDPKFEEAAFALEPS 99

Query: 257 TT--NPY---VTQKGVEYIAICDKR 276
           TT         T+ G   I +  ++
Sbjct: 100 TTNNPKIAEAKTEFGYHIIMVEGRK 124


>gi|323488673|ref|ZP_08093915.1| SurA domain-containing protein [Planococcus donghaensis MPA1U2]
 gi|323397691|gb|EGA90495.1| SurA domain-containing protein [Planococcus donghaensis MPA1U2]
          Length = 253

 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 58/188 (30%), Gaps = 11/188 (5%)

Query: 41  RIRTTINGEVITDGDIS-----------KRIALLKLQKINGELEKIAVQELIVETLKKQE 89
            +   +NGE IT  D              +  L   +    +L++     L+ + L  QE
Sbjct: 61  EVVAEVNGEEITKEDFESIYTGQFEQMAMQSQLSGQEVDQSQLKEQVADSLVAQELLVQE 120

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
            EK  +T      N    + A+  GL++ D      K+               +  + + 
Sbjct: 121 TEKQKLTASEEQTNTALEELAQQNGLTSSDELLAALKEQGISEEEVMKQIETQVKIEQLI 180

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
                +    + E+     + K             F     +++ Q  VQK  +  +   
Sbjct: 181 AAETGEIKLTDEELQTYYDEAKAQQEEAGGEEIPAFEDVKPQIEEQLKVQKESEATQALI 240

Query: 210 LRLPKDCN 217
            +L +   
Sbjct: 241 AKLREQAE 248


>gi|50083929|ref|YP_045439.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase)
           [Acinetobacter sp. ADP1]
 gi|49529905|emb|CAG67617.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase)
           [Acinetobacter sp. ADP1]
          Length = 95

 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 8/68 (11%), Positives = 22/68 (32%), Gaps = 1/68 (1%)

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT-TNPYVTQ 264
           ++            +++++       G+   + +  L P    L+  +       P  +Q
Sbjct: 21  KKKIQDGADFTKIAKQYSTCNSAKRGGELGEVKKGQLVPVIDKLVFSAAERVLHGPIKSQ 80

Query: 265 KGVEYIAI 272
            G   + I
Sbjct: 81  FGFHLVEI 88


>gi|116208446|ref|XP_001230032.1| hypothetical protein CHGG_03516 [Chaetomium globosum CBS 148.51]
 gi|88184113|gb|EAQ91581.1| hypothetical protein CHGG_03516 [Chaetomium globosum CBS 148.51]
          Length = 181

 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/163 (7%), Positives = 39/163 (23%), Gaps = 5/163 (3%)

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK---YGNLEMEIPANKQKM 170
             S      +        + ++      +    +   ++            +    K + 
Sbjct: 16  RHSNSKNLPYYFNSVEKVSRWEPPAETDTEKLKLYMAEYHSNKGLAAGTGEDRQPGKIRA 75

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP-KDCNKLEKFASKIHDV 229
            ++ V+    R       +   + +    + IK  E                 +      
Sbjct: 76  AHLLVKHRDSRRPSSWRENTITRTKEDAYEIIKAHEARIKGGEVSLGQLALTESDCSSAR 135

Query: 230 SIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
             G   +    D+  +F++      +   +    T  G+  I 
Sbjct: 136 KQGDLGFFGRGDMQKEFEDAAFALREGEVSGIVDTASGLHLIE 178


>gi|332519007|ref|ZP_08395474.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lacinutrix algicola
           5H-3-7-4]
 gi|332044855|gb|EGI81048.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lacinutrix algicola
           5H-3-7-4]
          Length = 711

 Score = 46.6 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/149 (8%), Positives = 42/149 (28%), Gaps = 3/149 (2%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           + +K+       I ++       I   +       +  S  +  TING+ I+       +
Sbjct: 3   ILNKIRQKTVVLILVIALALFAFILSSLFDNKDALFNKSPNVVATINGKDISR---EAFM 59

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
           A ++ Q      +   + ++    +++  ++                   +    S+  F
Sbjct: 60  ARVEAQNNPNATQTQIMNQVYNAEVREAVMQSQFDKLGLTVGREQMRDLLKTNLASSPQF 119

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
            +          +       ++      +
Sbjct: 120 FNADGIFDENVLNNYIANLKETSPVAYRQ 148



 Score = 42.7 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 19/240 (7%), Positives = 66/240 (27%), Gaps = 11/240 (4%)

Query: 52  TDGDIS--KRIALLKLQKINGELEKIAVQ----ELIVETLKKQEIEKSGITFDSNTVNYF 105
           T  D+   + +  +K +++    ++ A+Q    +LI    +  + +   +   +      
Sbjct: 224 TKYDVEASRNLQYVKFEEVASVEDENAIQGELIKLIQNREEYVDGKNQMVAGFAEMNVEN 283

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
              +      +   +      +       +  ++  ++            +   ++    
Sbjct: 284 AEAYVNANSDAEIKYQDKFVYKSSLPRALQDSISNLNVGNVYGPYKDGQTFKITKLLEKR 343

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
                   +           +  +     +          +  +    K      +  + 
Sbjct: 344 QLADSIQSSHILIPFVGSQAATAETTKTKEEAKATADSIFKLVKNNKTKYAEVANEINTD 403

Query: 226 IHDVSIGKAQYLLESDLHPQ-----FQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
                 G   +   +  +P      F N L  +   + +  +T+ G   I I DK+++  
Sbjct: 404 GSKGKDGSIGWTRLTTYNPLGFDPDFANFLFFNDKGSIDVVLTKFGYHIIRIDDKKNVDT 463


>gi|188996999|ref|YP_001931250.1| hypothetical protein SYO3AOP1_1079 [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932066|gb|ACD66696.1| hypothetical protein SYO3AOP1_1079 [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 460

 Score = 46.6 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 51/344 (14%), Positives = 103/344 (29%), Gaps = 39/344 (11%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI---- 56
           M  K+  S    I L  T F  +   IV I+ YK     +     +NG+ I   +     
Sbjct: 1   MFDKISQSKWKNIVLFITVFAFVATSIVAIIVYKLSGEING-VAEVNGKEIPFYEFNYAY 59

Query: 57  -----SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
                + ++  L +  +  +++K  V +LI + L  QE EK GIT  S  V    ++ + 
Sbjct: 60  EMTARNMQMQNLDISNLKDQIKKEVVNDLIEKELLYQEAEKEGITATSEQVKNEILKISA 119

Query: 112 N--TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
               G   +     +           + +  + +  + +K   +      + EI    +K
Sbjct: 120 FQVNGKFDKQTYLQIINSFGLTPDAFENILRKELSVNNLKTILLSTIYVSDEEIETFTKK 179

Query: 170 ---------------------MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
                                       E   +  L     N    +  +QK   D  + 
Sbjct: 180 QLTRVSGEATIIKPNTPEITEEMIKKFYEEHKKDYLAQTGKNITVYKIDIQKLGDDKAQQ 239

Query: 209 RLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD----LHPQFQNLLKK-SQNNTTNPYVT 263
             +      K     S   +V       +  +     L  + Q  +   +++   +   T
Sbjct: 240 LAKQLFTQAKSGNLQSVPAEVEKVFEGDVFSNQEIQNLPKEIQEDVNSLNKDKKVSFTKT 299

Query: 264 QKGVEY-IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
           Q      +   +         +K  +  +      +K   +  K
Sbjct: 300 QNEYYISVFNGESLKSIPYEQVKNEIKQKLERELSQKALQDMQK 343



 Score = 42.4 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 16/158 (10%), Positives = 37/158 (23%), Gaps = 6/158 (3%)

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
             K    + +           +++      V   I     +       +         +L
Sbjct: 291 DKKVSFTKTQNEYYISVFNGESLKSIPYEQVKNEIKQKLERELSQKALQDMQKTTDITQL 350

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAI 272
            K     ++  S      +     +   DL+              + P  T+ G+    +
Sbjct: 351 LKQNKTEKQTISDNTIQELVVKFGIKREDLNKL----ANLKVGEISKPISTENGILIFKL 406

Query: 273 CDKRDLGGEI--ALKAYLSAQNTPTKIEKHEAEYVKKL 308
            + ++         K  +       K       YV  L
Sbjct: 407 TEIKEPDKSQVDETKRTILPFIKSQKFNDVYQMYVDSL 444


>gi|254805018|ref|YP_003083239.1| peptidyl-prolyl cis-trans isomerse D [Neisseria meningitidis
           alpha14]
 gi|254668560|emb|CBA06033.1| peptidyl-prolyl cis-trans isomerse D [Neisseria meningitidis
           alpha14]
 gi|319410487|emb|CBY90848.1| putative peptidyl-prolyl cis-trans isomerase D (PPIase D; rotamase
           D) [Neisseria meningitidis WUE 2594]
          Length = 512

 Score = 46.2 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/309 (11%), Positives = 83/309 (26%), Gaps = 22/309 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +F S+  +         LI    V           +     +  E I+D  I+  I   +
Sbjct: 1   MFHSIEKYRTPAQVLLGLIALTFVGFGVSTVSHPGADYIVQVGDEKISDHSINNAIQNEQ 60

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                G       Q L+     KQ  +  GI+  S  +    V        + +   + L
Sbjct: 61  A-DGGGPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFDHALL 119

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           ++     +  +     +      ++N          + +   + +      +        
Sbjct: 120 NRYLSQRHMSEDQFVEEIRDQFALQNLV--NLVQNGVLVGDAQAEQLIRLTQVNRTIRSH 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
              PD  +      +  ++    +  +       ++     ++       Q + E+++  
Sbjct: 178 TFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEVKN 237

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            F+  + +   N   P                        KA +  +    K      + 
Sbjct: 238 AFEERVARLPANEAKP-------------------SFEQEKAAVENELKMKKAVADFNKA 278

Query: 305 VKKLRSNAI 313
            +KL  +A 
Sbjct: 279 KEKLGDDAF 287


>gi|313668353|ref|YP_004048637.1| peptidyl-prolyl cis-trans isomerase [Neisseria lactamica ST-640]
 gi|313005815|emb|CBN87269.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria lactamica
           020-06]
          Length = 512

 Score = 46.2 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/309 (10%), Positives = 81/309 (26%), Gaps = 22/309 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +F S+  +         LI    V           +     +  E I++  ++  I   +
Sbjct: 1   MFHSIEKYKTPAQVLLGLIALTFVGFGVSTVSRPGADYIVRVGDEKISEQSLNAAIQNEQ 60

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                        Q L+     KQ  +  GI+  S  +    V          +   + L
Sbjct: 61  A-DGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDAGGKFDHALL 119

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           ++     +  +     +      ++N          + +   + +      +        
Sbjct: 120 NRYLSQRHMSEDQFVEEIRDQFALQNLV--NLVQNGVLVGDAQAEQLIRLTQVNRTIRSH 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
              PD  +      +  ++    +  +       ++     ++       Q + E+++  
Sbjct: 178 TFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQAVSETEVKN 237

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            F+  + +   N   P                        KA +  +    K      + 
Sbjct: 238 AFEERVARLPANEAKP-------------------SFEQEKASVENELKMKKAVADFNKA 278

Query: 305 VKKLRSNAI 313
            +KL  +A 
Sbjct: 279 KEKLGDDAF 287


>gi|25010882|ref|NP_735277.1| foldase protein PrsA [Streptococcus agalactiae NEM316]
 gi|77409622|ref|ZP_00786296.1| rotamase family protein [Streptococcus agalactiae COH1]
 gi|77413120|ref|ZP_00789320.1| rotamase family protein [Streptococcus agalactiae 515]
 gi|46396916|sp|Q8E602|PRSA_STRA3 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|23095261|emb|CAD46471.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160821|gb|EAO71932.1| rotamase family protein [Streptococcus agalactiae 515]
 gi|77171768|gb|EAO74963.1| rotamase family protein [Streptococcus agalactiae COH1]
          Length = 309

 Score = 46.2 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 78/301 (25%), Gaps = 30/301 (9%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
            L +  +  + +      +     T+ G+ IT  D   ++             K A Q +
Sbjct: 11  FLTLMSVATLAACSGKTSNGTNVVTMKGDTITVSDFYDQVK----------TSKAAQQSM 60

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           +   L +    + G       V+  + + A+  G S                   +    
Sbjct: 61  LTLILSRVFDTQYGDKVSDKKVSEAYNKTAKGYGNSFSSAL-------SQAGLTPEGYKQ 113

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           Q     +V+            E             + Y   T +  I  +       V K
Sbjct: 114 QIRTTMLVEYAVKEAAKKELTEA------NYKEAYKNYTPETSVQVIKLDAEDKAKSVLK 167

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP 260
            +K       ++ K+         +    S G    L +  +   F+       +  +  
Sbjct: 168 DVKADGADFAKIAKEKTTATDKKVEYKFDSAG--TSLPKEVMSAAFKLDKNGVSDVVSTV 225

Query: 261 YVTQK--GVEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEKHE--AEYVKKLRSNAIIH 315
             T        I + DK +   +  + K  L       K        + + K    A + 
Sbjct: 226 DSTTYKTSYYIIKVTDKTEKKSDWKSYKNRLKEVILKDKTSDRSFQNKVISKALEKANVK 285

Query: 316 Y 316
            
Sbjct: 286 I 286


>gi|291529969|emb|CBK95554.1| PPIC-type PPIASE domain [Eubacterium siraeum 70/3]
          Length = 472

 Score = 46.2 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 9/127 (7%), Positives = 41/127 (32%), Gaps = 6/127 (4%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGK--AQYLLESDLHPQFQNLLK-- 251
              +K     +++          +++++S   + + G+       +  +     + +   
Sbjct: 304 EIKEKADAALKKATAEGADFDAVVKEYSSAYSESTKGEQILVLNSKGLISDALYDAVFAL 363

Query: 252 KSQNNTTNPYVTQKGVEYIA-ICDKRDLGGE-IALKAYLSAQNTPTKIEKHEAEYVKKLR 309
           +   + +    T  G   +  + D +    +    +  +  +   ++  +     +++ R
Sbjct: 364 EKPGDISGLIPTDSGYYIVKYVSDAKVTDSDLSDYRKTVRQELLTSRQSEKTNAILEEWR 423

Query: 310 SNAIIHY 316
           S     Y
Sbjct: 424 SAVNYEY 430


>gi|322652566|gb|EFY48920.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
          Length = 141

 Score = 46.2 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/141 (11%), Positives = 38/141 (26%), Gaps = 17/141 (12%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T+ +  +  +    +++ F +  +  Y     S+     +NG+ I+        
Sbjct: 1   MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYL-IGGSNNYAAKVNGQEISRAQFENAF 59

Query: 61  ALLKLQKING----------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + +                     L +  +  LI E L  Q   +  +      V  
Sbjct: 60  NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119

Query: 105 FFVQHARNTGLSAEDFSSFLD 125
                         D + +  
Sbjct: 120 AIFATPAFQVDGKFDNNRYNA 140


>gi|148264907|ref|YP_001231613.1| hypothetical protein Gura_2867 [Geobacter uraniireducens Rf4]
 gi|146398407|gb|ABQ27040.1| hypothetical protein Gura_2867 [Geobacter uraniireducens Rf4]
          Length = 525

 Score = 46.2 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 260 PYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           P+        + +  + +         K  L     P K ++    ++K+L+S A I
Sbjct: 460 PFKVGNSWYAVKLKQRTEANTADFQKSKEQLKQALLPKKQQETLDNWLKELKSKAKI 516



 Score = 42.7 bits (98), Expect = 0.065,   Method: Composition-based stats.
 Identities = 22/179 (12%), Positives = 60/179 (33%), Gaps = 21/179 (11%)

Query: 15  LLTTYFVLIIFCIVP----IVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK------ 64
           L+   F +I+F  +     +        S      +NG  I+  +  K    +K      
Sbjct: 13  LIKIVFCVIVFSFIGTIFLVWGRGDKTDSGDFAAKVNGTKISFDEYQKNYYRMKGIYEQI 72

Query: 65  -------LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG--- 114
                    +    ++K A++ LI   L  +E ++ GI  + + ++    +         
Sbjct: 73  YGRSMTPEMEKQLGIKKTALESLIDNALILKEAKRLGIDVNRDEISAEIAKMPAFQKDGV 132

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
            + + ++  L    I   +F++ +    +     +     +    + ++    +K  + 
Sbjct: 133 FNFDQYTQMLKANRITPQNFEESMEEDMLVKKT-REKIKERATVSDQDLLQAFKKQNDK 190


>gi|319947343|ref|ZP_08021576.1| peptidyl-prolyl cis-trans isomerase [Streptococcus australis ATCC
           700641]
 gi|319746585|gb|EFV98845.1| peptidyl-prolyl cis-trans isomerase [Streptococcus australis ATCC
           700641]
          Length = 313

 Score = 46.2 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/315 (10%), Positives = 84/315 (26%), Gaps = 42/315 (13%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K       + +  +V + +         I  T+ G+ IT GD    I        N + 
Sbjct: 1   MKKKFVAGAVTLLSVVTLAACAKGGSDKDIV-TMKGDTITVGDFYDEIK-------NNQG 52

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            +  + ++ +  + ++E        D                   E F+S+L +QG+ + 
Sbjct: 53  AQQYLFQMTINKVFEKEYGSKVSDKDVEKKVDE------QKKQLGEAFNSYLTQQGLTEE 106

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             KQ +    +    V      +  +   +        +                     
Sbjct: 107 TNKQQIRSNLLLEYAVDQAISKELTDEAYKKAFETYTPEITANVI--------------- 151

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYLLESDLHPQFQNLLK 251
                 +K  +     +          ++ ++        G+ ++   +   P       
Sbjct: 152 -KLDSEEKANEVLASVKAEGADFAQIAKENSTDASTKEKGGEIKFDSGTTTVPTRVKEAA 210

Query: 252 KS--QNNTTNPY------VTQKGVEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEKH-- 300
                N  ++         +      + +  K + G +    +  L    T  +      
Sbjct: 211 SKLDVNGISDVVIDPASQKSAGAYYIVKVTKKEEKGSDWKKYEKRLKEILTAERKNDANF 270

Query: 301 EAEYVKKLRSNAIIH 315
               + K  +NA I 
Sbjct: 271 IRSIIAKAMTNANIK 285


>gi|322698453|gb|EFY90223.1| Peptidyl-prolyl cis-trans isomerase PIN4 [Metarhizium acridum CQMa
           102]
          Length = 124

 Score = 46.2 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 27/85 (31%), Gaps = 6/85 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               + ++A        K       ++        G   +  +  L P+F+ +    + +
Sbjct: 41  EKHAKKEEALAKLNDGVKFDEVARNYSED-KARQGGALGWKTKGSLDPKFEEVAFALEPS 99

Query: 257 TT--NPY---VTQKGVEYIAICDKR 276
           TT         T+ G   I +  ++
Sbjct: 100 TTNNPKIAEARTEFGYHIIMVEGRK 124


>gi|260663478|ref|ZP_05864368.1| peptidylprolyl isomerase [Lactobacillus fermentum 28-3-CHN]
 gi|260552019|gb|EEX25072.1| peptidylprolyl isomerase [Lactobacillus fermentum 28-3-CHN]
          Length = 325

 Score = 46.2 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/299 (9%), Positives = 77/299 (25%), Gaps = 34/299 (11%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           +       ++    A  ++   T +G  IT+ +    +             K  +Q++I+
Sbjct: 2   LAIIAGLALALPLAACGNKAVATTSGGKITESEYYSSMK-------QTSNGKQVLQQMIL 54

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           + + +++      T + N+    + +   ++  +         K              Q 
Sbjct: 55  DKVLEKQYGSKVSTSEVNSEYNAYKKEYGSSFSTVLSEEGLTAK----------SFKQQI 104

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
               ++K             +    +K +       ++              +       
Sbjct: 105 RSNLLLKAAVRNYSTFSSSALKKQWKKYEPKVQTAEIL----------VGSKETAQSIID 154

Query: 203 KDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYL--LESDLHPQFQNLLKK-SQNNTT 258
                S  +L +     +  ++      + G        ++ L   ++           T
Sbjct: 155 TLNNTSGSKLKEFKKLAKSKSTDTTTKSNGGVLSAFDNTDTSLPSAYRKAAFALKTGEYT 214

Query: 259 -NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK--HEAEYVKKLRSNAII 314
             P  T  G   I +      G   +  + L  Q     +         V K+     I
Sbjct: 215 TEPVKTDNGYYVIYMIKHPAKGKYSSHISDLKDQIVTQNLNNSTFLHNVVSKVLKKGDI 273


>gi|76788083|ref|YP_329554.1| foldase protein PrsA [Streptococcus agalactiae A909]
 gi|123601968|sp|Q3K1P9|PRSA_STRA1 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|76563140|gb|ABA45724.1| foldase protein PrsA [Streptococcus agalactiae A909]
 gi|319744849|gb|EFV97187.1| peptidyl-prolyl cis-trans isomerase [Streptococcus agalactiae ATCC
           13813]
          Length = 309

 Score = 46.2 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 78/301 (25%), Gaps = 30/301 (9%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
            L +  +  + +      +     T+ G+ IT  D   ++             K A Q +
Sbjct: 11  FLTLMSVATLAACSGKTSNGTNVVTMKGDTITVSDFYDQVK----------TSKAAQQSM 60

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           +   L +    + G       V+  + + A+  G S                   +    
Sbjct: 61  LTLILSRVFDTQYGDKVSDKKVSEAYNKTAKGYGNSFSSAL-------SQAGLTPEGYKQ 113

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           Q     +V+            E             + Y   T +  I  +       V K
Sbjct: 114 QIRTTMLVEYAVKEAAKKELTEA------NYKEAYKNYTPETSVQVIKLDAEDKAKSVLK 167

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP 260
            +K       ++ K+         +    S G    L +  +   F+       +  +  
Sbjct: 168 DVKADGADFAKIAKEKTTATDKKVEYKFDSAG--TSLPKEVMSAAFKLDKNGVSDVVSTV 225

Query: 261 YVTQK--GVEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEKHE--AEYVKKLRSNAIIH 315
             T        I + DK +   +  + K  L       K        + + K    A + 
Sbjct: 226 DSTTYKTSYYIIKVTDKTEKKSDWKSYKNRLKEVILKDKTSDRAFQNKVISKALEKANVK 285

Query: 316 Y 316
            
Sbjct: 286 I 286


>gi|254797079|ref|YP_003081917.1| hypothetical protein NRI_0706 [Neorickettsia risticii str.
           Illinois]
 gi|254590325|gb|ACT69687.1| conserved hypothetical protein [Neorickettsia risticii str.
           Illinois]
          Length = 307

 Score = 46.2 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 55/166 (33%), Gaps = 12/166 (7%)

Query: 18  TYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL-EKIA 76
            + V+ +  ++   S  S+++  +    +   +I++ D+     L+ +     +L    A
Sbjct: 1   MFRVICVVFLLSFFSLPSYSIEVKTAAMVGDVIISNQDVHNYQNLVVMLGEKSDLSYSAA 60

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           ++++I   +  Q  ++ G+ F     +                     +           
Sbjct: 61  LEQMIDLEVCYQYAKRVGLPFSDQKYDAALKHLQALGINRGAHVGLLEE----------- 109

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
           YL  Q    +VV      +    + +  A K+++        L R 
Sbjct: 110 YLKKQVFLSEVVDQIIRPRVRIDDSDFDAIKRELLKKKNTFKLKRI 155


>gi|134278147|ref|ZP_01764861.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 305]
 gi|134249931|gb|EBA50011.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei 305]
          Length = 280

 Score = 46.2 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/309 (7%), Positives = 72/309 (23%), Gaps = 59/309 (19%)

Query: 23  IIFCIVPIVSYKSWAMSSR----IRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQ 78
            +  +  +++  + A   +       T+N   +    +   I    L             
Sbjct: 11  AVSVLFGLLAATANAQQGKGGADAFATVNDVQLYRSQLEAFIKQSGLP-DTDATRAQIEN 69

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
           ++I   + +Q  EK+                                          Q  
Sbjct: 70  DMISGEVVRQAAEKANYGDRKEVA------------------------------AIVQMA 99

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
             ++     ++++  +   +           +      EY  + +               
Sbjct: 100 KTKAESELYLRDNVKVAPVSDSEVKARYDAMVAGAGRLEYKPQII-----------SVND 148

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL----------LESDLHPQFQN 248
                    +  +     +   +++   +  + G   ++           +    P  + 
Sbjct: 149 DATAGKVLAALKQGHSFDDLARQYSVASNRATGGAMGWVTFKTPVQEGQTQGVPFPMAKA 208

Query: 249 LLKKSQNNTTNP-YVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYV 305
           +                     I + D R         +K+ L  Q    + +K     V
Sbjct: 209 MANLKAGEYAQTAVALGDARVIIKMSDVRPTKILSYDEIKSALRQQLEAAERQKATDTLV 268

Query: 306 KKLRSNAII 314
           ++L + A +
Sbjct: 269 QQLLNEATV 277


>gi|296876819|ref|ZP_06900867.1| peptidyl-prolyl cis-trans isomerase [Streptococcus parasanguinis
           ATCC 15912]
 gi|296432321|gb|EFH18120.1| peptidyl-prolyl cis-trans isomerase [Streptococcus parasanguinis
           ATCC 15912]
          Length = 314

 Score = 46.2 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/310 (10%), Positives = 88/310 (28%), Gaps = 36/310 (11%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMS-SRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +    V     ++ +V+  + A S ++   T+ G+ IT  D    I        + +  +
Sbjct: 1   MKKKLVAGAVTLLSVVTLAACANSTNKDVVTMKGDTITVSDFYDEIK-------SNQGAQ 53

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             + ++ +  + ++E        + +         A+        F ++L +QG+ +   
Sbjct: 54  QVLFQMTINKVFEKEYGSKISDKEVDKEL------AKQKKQLGNQFDAYLAQQGLTEETA 107

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
           K+ +    +    V           + +                +   ++    ++K + 
Sbjct: 108 KKQIRSNMLLEYAVSQAAKKDIKESDYKTAFESY-------TPEVTAQIIKLDSEDKAKE 160

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ 254
                K          +        +    ++   S                +   K  +
Sbjct: 161 VLEAAKAEGADFAKIAKDNSTDTATKDKGGEVKFDSG------TADIPSQVKEAAFKLDE 214

Query: 255 NNTTNPYVTQKG------VEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEK--HEAEYV 305
           N  ++      G         + +  K + G +    +  L       + +   +    +
Sbjct: 215 NGISDVITVSAGQNYSASYYIVKLNKKTEKGSDWKKYEKRLKEIIIEGRKQDTNYIRSII 274

Query: 306 KKLRSNAIIH 315
            K  +NA I 
Sbjct: 275 AKAMTNANIK 284


>gi|262377504|ref|ZP_06070726.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter lwoffii SH145]
 gi|262307560|gb|EEY88701.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter lwoffii SH145]
          Length = 94

 Score = 46.2 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 9/75 (12%), Positives = 26/75 (34%), Gaps = 1/75 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT- 257
           ++  +  ++  L         +++++       G+   + +  L P    L+  +     
Sbjct: 14  KETAEQLKKKILSGADFNKIAKQYSTCNSAKRGGELGEVKKGQLVPVIDKLVFTAAERVL 73

Query: 258 TNPYVTQKGVEYIAI 272
             P  +Q G   + I
Sbjct: 74  HGPVKSQFGFHLVEI 88


>gi|304387500|ref|ZP_07369689.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis ATCC
           13091]
 gi|304338387|gb|EFM04508.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis ATCC
           13091]
          Length = 512

 Score = 46.2 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/309 (10%), Positives = 82/309 (26%), Gaps = 22/309 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +F S+  +         LI    V           +     +  E I+D  I+  +   +
Sbjct: 1   MFHSIEKYRTPAQILLGLIALTFVGFGVSTVSHPGADYIVQVGDEKISDHSINNAMQNEQ 60

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                        Q L+     KQ  +  GI+  S  +    V        + +   + L
Sbjct: 61  A-GGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFDHALL 119

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           ++     +  +     +      ++N          + +   + +      +        
Sbjct: 120 NRYLSQRHMSEDQFVEEIHDQFALQNLV--NLVQNGVLVGDAQAEQLIRLTQVNRTIRSH 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
              PD  +      +  ++    +  +       ++     ++       Q + E+++  
Sbjct: 178 TFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEVKN 237

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            ++  + +   N   P                        KA +  +    K      + 
Sbjct: 238 VYEERVARLPANEAKP-------------------SFEQEKAAIENELKMKKAVADFNKA 278

Query: 305 VKKLRSNAI 313
            +KL  +A 
Sbjct: 279 KEKLGDDAF 287


>gi|254671966|emb|CBA04388.1| peptidyl-prolyl cis-trans isomerse D [Neisseria meningitidis
           alpha275]
          Length = 512

 Score = 45.8 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/309 (11%), Positives = 83/309 (26%), Gaps = 22/309 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +F S+  +         LI    V           +     +  E I+D  I+  I   +
Sbjct: 1   MFHSIEKYRTPAQVLLGLIALTFVGFGVSTVSHPGADYIVQVGDEKISDHSINNAIQNEQ 60

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                G       Q L+     KQ  +  GI+  S  +    V        + +   + L
Sbjct: 61  A-DGGGPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFDHALL 119

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           ++     +  +     +      ++N          + +   + +      +        
Sbjct: 120 NRYLSQRHMSEDQFVEEIRDQFALQNLV--NLVQNGVLVGDAQAEQLIRLTQVNRTIRSH 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
              PD  +      +  ++    +  +       ++     ++       Q + E+++  
Sbjct: 178 TFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEVKN 237

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            F+  + +   N   P                        KA +  +    K      + 
Sbjct: 238 AFEERVARLPANEAKP-------------------SFEQEKAAVENELKMKKAVTDFNKA 278

Query: 305 VKKLRSNAI 313
            +KL  +A 
Sbjct: 279 KEKLGDDAF 287


>gi|227515601|ref|ZP_03945650.1| peptidylprolyl isomerase [Lactobacillus fermentum ATCC 14931]
 gi|227086031|gb|EEI21343.1| peptidylprolyl isomerase [Lactobacillus fermentum ATCC 14931]
          Length = 313

 Score = 45.8 bits (106), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/282 (9%), Positives = 73/282 (25%), Gaps = 32/282 (11%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           +       ++    A  ++   T +G  IT+ +    +             K  +Q++I+
Sbjct: 2   LAIIAGLALALPLAACGNKAVATTSGGKITESEYYSSMK-------QTSNGKQVLQQMIL 54

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           + + +++      T + N+    + +   ++  +         K              Q 
Sbjct: 55  DKVLEKQYGSKVSTSEVNSEYNAYKKEYGSSFSTVLSEEGLTAK----------SFKQQI 104

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
               ++K             +    +K +       ++              +       
Sbjct: 105 RSNLLLKAAVRNYSTFSSSALKKQWKKYEPKVQTAEIL----------VGSKETAQSIID 154

Query: 203 KDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYL--LESDLHPQFQNLLKK-SQNNTT 258
                S  +L +     +  ++      + G        ++ L   ++           T
Sbjct: 155 TLNNTSGSKLKEFKKLAKSKSTDTTTKSNGGVLSAFDNTDTSLPSAYRKAAFALKTGEYT 214

Query: 259 -NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
             P  T  G   I +      G   +  + L  Q     +  
Sbjct: 215 TEPVKTDNGYYVIYMIKHPAKGKYSSHISDLKDQIVTQNMNN 256


>gi|225180894|ref|ZP_03734342.1| SurA domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225168375|gb|EEG77178.1| SurA domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 241

 Score = 45.8 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 65/234 (27%), Gaps = 16/234 (6%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMS----SRIRTTINGEVITDGDISKRI 60
           +  +   F  LL    ++ +  +       +        ++   T+NG  IT  D S ++
Sbjct: 3   IIKTKKVFFTLLVFSVLISLVALGGCSEQATDGNEETDGNKAIATVNGVGITYDDFSAQL 62

Query: 61  ALLKLQKING-----------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
              +                  LE  AV+ LI E L  QE E   I    + ++    Q 
Sbjct: 63  LEFEQLAQMQGMSLEDPETVTILENQAVEVLINEQLLLQEAENKDIQISQSEIDEQIDQM 122

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
                     F   L  QG+        +    +   V          + +        +
Sbjct: 123 KS-GFEDDGQFEEALAAQGVEIEELADLIREDMLIQAVFAETVPNISVSEDEITDEEINE 181

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
           + +   +    + +     +           +     E +  +     +L + +
Sbjct: 182 VYDQQQQMAEAQGMDLPPLEELEAEVVAFIIQQMQEAEEKQAIENLLAELRENS 235


>gi|257083614|ref|ZP_05577975.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis Fly1]
 gi|256991644|gb|EEU78946.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis Fly1]
          Length = 336

 Score = 45.8 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/315 (7%), Positives = 78/315 (24%), Gaps = 41/315 (13%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K +    +L     + + S  + +  S+   T+ G  IT  D   +I             
Sbjct: 3   KRMKKKLILAAAGAMAVFSLAACSSGSKDIATMKGSTITVDDFYNQIK-------EQSTS 55

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           + A  ++++  + +++             +    +   +     E               
Sbjct: 56  QQAFSQMVIYKVFEEKYGD-------KVTDKAIQKKFDDAKKQVEAQGGKFSDALTQAGL 108

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
            ++    Q    + ++          + ++             + +              
Sbjct: 109 TEKSFKKQLKQAEAMQVGLKDHLKITDEDLKTAWASFHPEVEAQII-------------- 154

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQF--QNLL 250
            Q   +   K  ++            +  +         GK ++  +S   P    +   
Sbjct: 155 -QVASEDDAKAVKKEITDGGDFAKIAKDKSTDAATKKDGGKIKFDSQSTTVPAEVKEAAF 213

Query: 251 KKSQNNTTNPYVTQKG------VEYIAICDKRDLGGE-IALKAYLSAQNTPTKI--EKHE 301
           K      + P               + +   +  G +    +  +      TK+  +   
Sbjct: 214 KLKDGEVSEPIAATNAQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKIAEETKLADQTFV 273

Query: 302 AEYVKKLRSNAIIHY 316
           ++ +      A +  
Sbjct: 274 SKVISDELKAANVKI 288


>gi|322389168|ref|ZP_08062729.1| peptidyl-prolyl cis-trans isomerase [Streptococcus parasanguinis
           ATCC 903]
 gi|321144073|gb|EFX39490.1| peptidyl-prolyl cis-trans isomerase [Streptococcus parasanguinis
           ATCC 903]
          Length = 314

 Score = 45.8 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/310 (9%), Positives = 84/310 (27%), Gaps = 36/310 (11%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMS-SRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +    V     ++ +V+  + A   ++   T+ G+ IT  D    I          +  +
Sbjct: 1   MKKKLVAGAVTLLSVVTLAACANGTNKDIVTMKGDTITVSDFYNEIK-------TNQGAQ 53

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             + ++ +  + ++E        + +         A+        F ++L +QG+ +   
Sbjct: 54  QVLFQMTINKVFEKEYGSKVSDKEVDKEL------AKQKKQLGNRFDAYLAQQGLTEETA 107

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
           K+ +    +    V           + +                +   ++    ++K + 
Sbjct: 108 KKQIRSNMLLEYAVNQAAKKDIKESDYKAAFESY-------TPEVTAQIIKLDSEDKAKE 160

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ 254
                K          +        +    ++   S                +   K  +
Sbjct: 161 VLEAAKAEGADFAQIAKDNSTDTTTKDKGGEVKFDSG------TADIPSQVKEAAFKLDE 214

Query: 255 NNTTNPYVTQKG------VEYIAICDKRDLGGEIALKAYLSAQNT---PTKIEKHEAEYV 305
           N  ++      G         + +  K + G +         +       +   +    +
Sbjct: 215 NGISDVITVSAGQNYSASYYIVKLNKKTEKGSDWKKYEKRLKEIIVDGRKQDTNYIRSII 274

Query: 306 KKLRSNAIIH 315
            K  +NA I 
Sbjct: 275 AKAMTNANIK 284


>gi|295425340|ref|ZP_06818043.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus amylolyticus DSM
           11664]
 gi|295065116|gb|EFG56021.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus amylolyticus DSM
           11664]
          Length = 302

 Score = 45.8 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/288 (7%), Positives = 63/288 (21%), Gaps = 39/288 (13%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKS 93
                SS    +  G  IT       +          +  +  +  +I+     ++    
Sbjct: 23  ACSNGSSSTVASYKGGKITQQQYYDEMK-------KSQSGQSTLANMIIYRALNEQYGSK 75

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
             + + N          +      + + S        +               + +    
Sbjct: 76  VSSSEVN----------KQYNNYKKQYGSQFSAVLQQNGMTPSSFKQNLKTNLLSEAALK 125

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                 + +              +  ++ +L              +   +   +      
Sbjct: 126 DIKKVTKAQEKKAW----KTYQPKVTVQHIL-----------VSKKSTAQKIIKELKAGK 170

Query: 214 KDCNKLEKFA-SKIHDVSIGKAQYLLESD---LHPQFQNLLKKSQNNT-TNPYVTQKGVE 268
              +  +K++       + GK      +D            K       + P  +Q G  
Sbjct: 171 SFASLAKKYSLDTATKNNAGKLPAFDSTDTTLDPSFKTAAFKLKTGEVTSTPVKSQSGYH 230

Query: 269 YIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE--AEYVKKLRSNAII 314
            I +      G     K  +      +  +      E +  +   A +
Sbjct: 231 VIKMIKHPSKGTFAEHKKTIDNLIYASMAQDQTTMREVIATVLKRANV 278


>gi|293385010|ref|ZP_06630844.1| foldase protein PrsA [Enterococcus faecalis R712]
 gi|293389280|ref|ZP_06633742.1| foldase protein PrsA [Enterococcus faecalis S613]
 gi|312905999|ref|ZP_07765012.1| putative foldase protein PrsA [Enterococcus faecalis DAPTO 512]
 gi|312909345|ref|ZP_07768201.1| putative foldase protein PrsA [Enterococcus faecalis DAPTO 516]
 gi|291077688|gb|EFE15052.1| foldase protein PrsA [Enterococcus faecalis R712]
 gi|291081444|gb|EFE18407.1| foldase protein PrsA [Enterococcus faecalis S613]
 gi|310627994|gb|EFQ11277.1| putative foldase protein PrsA [Enterococcus faecalis DAPTO 512]
 gi|311290369|gb|EFQ68925.1| putative foldase protein PrsA [Enterococcus faecalis DAPTO 516]
          Length = 362

 Score = 45.8 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/315 (8%), Positives = 79/315 (25%), Gaps = 41/315 (13%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K +    +L     + + S  + +  S+   T+ G  IT  D   +I             
Sbjct: 19  KRMKKKLILAAAGAMAVFSLAACSSGSKDIATMKGSTITVDDFYNQIK-------EQSTS 71

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           + A  ++++  + +++             +    +   +     E               
Sbjct: 72  QQAFSQMVIYKVFEEKYGD-------KVTDKAIQKKFDDAKKQVEAQGGKFSDALTQAGL 124

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
            ++    Q    + ++          + ++             + +              
Sbjct: 125 TEKSFKKQLKQAEAMQVGLKDHLKITDEDLKTAWASFHPEVEAQII-------------- 170

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQF--QNLL 250
            Q   +   K  ++            +  +         GK ++  +S   P    +   
Sbjct: 171 -QVASEDDAKAVKKEITDGGDFAKIAKDKSTDAATKKDGGKIKFDSQSTTVPAEVKEAAF 229

Query: 251 KKSQNNTTNPYVTQKG------VEYIAICDKRDLGGE-IALKAYLSAQNTPTKI--EKHE 301
           K      + P               + +   +  G +    +  +      TK+  +  +
Sbjct: 230 KLKDGEVSEPIAATNAQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKIAEETKLADQTFQ 289

Query: 302 AEYVKKLRSNAIIHY 316
           A+ +      A +  
Sbjct: 290 AKVISDELKAANVKI 304


>gi|167749278|ref|ZP_02421405.1| hypothetical protein EUBSIR_00229 [Eubacterium siraeum DSM 15702]
 gi|167657771|gb|EDS01901.1| hypothetical protein EUBSIR_00229 [Eubacterium siraeum DSM 15702]
          Length = 472

 Score = 45.8 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 9/127 (7%), Positives = 41/127 (32%), Gaps = 6/127 (4%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGK--AQYLLESDLHPQFQNLLK-- 251
              +K     +++          +++++S   + + G+       +  +     + +   
Sbjct: 304 EIKEKADAALKKATADGADFDAVVKEYSSAYSESTAGEQILVLNSKGLISDALYDAVFAL 363

Query: 252 KSQNNTTNPYVTQKGVEYIA-ICDKRDLGGE-IALKAYLSAQNTPTKIEKHEAEYVKKLR 309
           +   + +    T  G   +  + D +    +    +  +  +   ++  +     +++ R
Sbjct: 364 EKPGDISGLIPTDSGYYIVKYVSDAKVTDSDLSDYRKTVRQELLTSRQSEKTNAILEEWR 423

Query: 310 SNAIIHY 316
           S     Y
Sbjct: 424 SAVNYEY 430


>gi|325144618|gb|EGC66917.1| hypothetical protein NMBM01240013_1034 [Neisseria meningitidis
           M01-240013]
 gi|325205986|gb|ADZ01439.1| conserved hypothetical protein [Neisseria meningitidis M04-240196]
          Length = 512

 Score = 45.8 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/309 (9%), Positives = 82/309 (26%), Gaps = 22/309 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +F S+  +         LI    V           +     +  E I++  ++  +   +
Sbjct: 1   MFHSIEKYRTPAQVLLGLIALTFVGFGVSTVSHPGADYIVQVGDEKISEQSLNAAVQNEQ 60

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                        Q L+     KQ  +  GI+  S  +    V        + +   + L
Sbjct: 61  A-DGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFDHALL 119

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           ++     +  +     +      ++N          + +   + +      +        
Sbjct: 120 NRYLSQRHMSEDQFVEEIRDQFALQNLV--NLVQNGVLVGDAQAEQLIRLTQVNRTIRSH 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
              PD  +      +  ++    +  +       ++     ++       Q + E+++  
Sbjct: 178 TFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEVKN 237

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            F+  + +   N   P                        KA +  +    K      + 
Sbjct: 238 AFEERVARLPANEAKP-------------------SFEQEKAAVENELKMKKAVADFNKA 278

Query: 305 VKKLRSNAI 313
            +KL  +A 
Sbjct: 279 KEKLGDDAF 287


>gi|158339544|ref|YP_001520933.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acaryochloris marina
           MBIC11017]
 gi|158309785|gb|ABW31401.1| conserved hypothetical protein, possible PpiC-type peptidyl-prolyl
           cis-trans isomerase [Acaryochloris marina MBIC11017]
          Length = 250

 Score = 45.8 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/229 (9%), Positives = 54/229 (23%), Gaps = 15/229 (6%)

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
           ELI    + Q + +      ++         +     + E F                  
Sbjct: 16  ELIPLLGQYQLLPQLLKELITDQAIQEVPLSSEERVQAVEQFYHQYQIGDDTQREAWLKH 75

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
              ++     +     K            Q   N    ++L     F      L      
Sbjct: 76  YCMTLQQMAAQAQRQFKLQ------KFKLQTWNNQVESDFLQHKGQFDQYVYSLIRVASA 129

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNT 257
           +   +     +       +   +++      + G    +  + +     Q L        
Sbjct: 130 EVAQELYFRLQGDEQAFSDLATQYSQGPEAQTGGLIGPVTATHMHPTLVQLLTNAQPGQV 189

Query: 258 TNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
             P    +    + +        +  + A L A      +E+   E+++
Sbjct: 190 RPPIRLGEWFVIVRL--------QTFISAQLDAPLRQQLLEQRFNEWLQ 230


>gi|319789891|ref|YP_004151524.1| hypothetical protein Theam_0916 [Thermovibrio ammonificans HB-1]
 gi|317114393|gb|ADU96883.1| hypothetical protein Theam_0916 [Thermovibrio ammonificans HB-1]
          Length = 187

 Score = 45.8 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 52/179 (29%), Gaps = 7/179 (3%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ----KINGELEKIAVQ 78
           +   ++ +V   S A S+++   +NG+ ITD D++  I  L  Q    K N    K  ++
Sbjct: 4   LTVALLTLVVATSSAASAKVLAEVNGKKITDKDLNAAIDSLPPQYHTLKNNPTFRKRMLE 63

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
            L+ E L  QE  K G+  D            R              K  +     K + 
Sbjct: 64  NLVKEELLYQEALKEGLENDPAFKRRLEQIKKRLLVQYLLSKHVKPPKVEVTKKEAKAFY 123

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGF 197
                   +  +    +     +E    +   +             +            
Sbjct: 124 EKN---KKMFTDATGKQVPFSAVEPFIMENLKRQKEQEALNRAVENYVKNLEAHAKVKI 179


>gi|218437417|ref|YP_002375746.1| hypothetical protein PCC7424_0412 [Cyanothece sp. PCC 7424]
 gi|218170145|gb|ACK68878.1| conserved hypothetical protein [Cyanothece sp. PCC 7424]
          Length = 241

 Score = 45.8 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/259 (12%), Positives = 82/259 (31%), Gaps = 24/259 (9%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           +    IT+ +I K++ L  +           V++++   + + E +K GIT D   +   
Sbjct: 2   VQTVKITEEEILKQVKLSSMMTD-------VVKDIVNRKIIEDETQKLGITVDEKELQQA 54

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
             +      L   + +       + +NH       + ++   + +           +I  
Sbjct: 55  ADKLRLMYQLYKAEDTWK----WLKENHLTVDDFEEIVFNKALSSKLA--VHLFNDKIEP 108

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
              + +       +   +L         ++    +     +E  +   +  ++  +    
Sbjct: 109 YYYEHQLDYTGVIMYEVILN--------DEELALELFYALQEGEITFSEIAHQYIE--DT 158

Query: 226 IHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL 284
                 G    +   DL P+    +          P VT KGV  I + +      +  L
Sbjct: 159 ELRRKGGYRGLVYRKDLKPEISATVFAAKPPQVIKPIVTSKGVHLILVEEIIQRQLDNPL 218

Query: 285 KAYLSAQNTPTKIEKHEAE 303
           +  ++       +EKH  +
Sbjct: 219 RHIIANSLFNEWLEKHTQQ 237


>gi|150388633|ref|YP_001318682.1| hypothetical protein Amet_0798 [Alkaliphilus metalliredigens QYMF]
 gi|149948495|gb|ABR47023.1| hypothetical protein Amet_0798 [Alkaliphilus metalliredigens QYMF]
          Length = 233

 Score = 45.8 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 66/232 (28%), Gaps = 17/232 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +FT  S     +    + ++                 +  T+NG  IT       +   K
Sbjct: 1   MFTKKSLLF--IVVGLIALLVIGCASEGENLSQDQGEVVATVNGASITREVFENTVERTK 58

Query: 65  LQKING--------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           L                   ++ + A+  L+ E +  QE ++ G       +        
Sbjct: 59  LNYQQQGIEFEGEEGEAMLVQVREQALNSLLQEEVLLQEAKEKGYDVSEEAIETELESMK 118

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                  E  ++ L+     ++  +  LA +      ++N+      + E       Q  
Sbjct: 119 GQFESEEEFEAA-LEFNQFTEDDLRNMLASEMAIEQFLQNELEEAPASDEEAQELYDQYA 177

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
             +                 +++ Q  +Q   ++ +E   +L     +  + 
Sbjct: 178 AQMKEIAEETGETEEMPAFEEVKEQLKMQIAQENQQELMAQLIDGLMEQSEI 229


>gi|149911665|ref|ZP_01900274.1| putative peptidyl-prolyl cis-trans isomerase C [Moritella sp. PE36]
 gi|149805246|gb|EDM65262.1| putative peptidyl-prolyl cis-trans isomerase C [Moritella sp. PE36]
          Length = 93

 Score = 45.8 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 8/76 (10%), Positives = 22/76 (28%), Gaps = 1/76 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVS-IGKAQYLLESDLHPQFQNLLKKSQNNT 257
           Q +  +  +   +        +  +         G      +  + P F  +   ++  T
Sbjct: 15  QDKAYEILKKLEKGENFQKLAKSHSICPSGKKDGGNLGEFRKGAMVPAFDKVCFNAEILT 74

Query: 258 TNPYVTQKGVEYIAIC 273
            +   T+ G   + I 
Sbjct: 75  PHLVKTKHGWHIVKIL 90


>gi|326790212|ref|YP_004308033.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           lentocellum DSM 5427]
 gi|326540976|gb|ADZ82835.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           lentocellum DSM 5427]
          Length = 337

 Score = 45.8 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/326 (9%), Positives = 97/326 (29%), Gaps = 29/326 (8%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVI-----------TDGDISKR-- 59
           +K ++   ++++   +        A    I  T+N E +           T   +     
Sbjct: 1   MKSISRTLIMLVLASIIAFGLTGCAKE-TIVATVNSEKVSEPLYRIFLWSTQRGLESILP 59

Query: 60  ----IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
               +  ++ +      ++ A++ +      KQ+ E++GI   +        + A+N   
Sbjct: 60  DIWDVDPIEGKTPEEFAKERALKSITYYVAVKQKAEEAGINKLTKEEKSAIKESAKNYVE 119

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
           + ++F +    +      F +Y  ++      +   ++     L+  +   +++ +  + 
Sbjct: 120 TNKEFVTNYGIKQKDYEKFLEYGKLEEKVVSQLGGTYIPNEEELKEAMKVLEEEGEFTSS 179

Query: 176 REYLIRTVLFSIPDNKL---QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
                  +                  +KR +D     L          K++      +  
Sbjct: 180 ATITHVLIKNKDEQGNTLPSDKDAEAKKRAEDVLNQALNGEDLTILARKYSEDAAVSTND 239

Query: 233 KAQYLLESDLHPQFQNLLKKSQN---NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS 289
                 + ++    + ++               T  G E + + +  D+      +A + 
Sbjct: 240 GQYTFKKGEMEESLEEVVFNEAKIGAVYPKLIETSMGYEIVKVEELNDMDEVTMKEAAIR 299

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAIIH 315
                   +      + +L +   + 
Sbjct: 300 KI-----QQDFVNHELSELSATYKVE 320


>gi|161870081|ref|YP_001599251.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis 053442]
 gi|161595634|gb|ABX73294.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis 053442]
          Length = 512

 Score = 45.8 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/309 (9%), Positives = 82/309 (26%), Gaps = 22/309 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +F S+  +         LI    V           +     +  E I++  ++  +   +
Sbjct: 1   MFHSIEKYRTPAQVLLGLIALTFVGFGVSTVSHPGADYIVQVGDEKISEQSLNAAVQNEQ 60

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                        Q L+     KQ  +  GI+  S  +    V        + +   + L
Sbjct: 61  A-DGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFDHALL 119

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           ++     +  +     +      ++N          + +   + +      +        
Sbjct: 120 NRYLSQRHMSEDQFVEEIRDQFALQNLV--NLVQNGVLVGDAQAEQLIRLTQVNRTIRSH 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
              PD  +      +  ++    +  +       ++     ++       Q + E+++  
Sbjct: 178 TFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEVKN 237

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            F+  + +   N   P                        KA +  +    K      + 
Sbjct: 238 AFEERVARLPANEAKP-------------------SFEQEKAAVENELKMKKAVADFNKA 278

Query: 305 VKKLRSNAI 313
            +KL  +A 
Sbjct: 279 KEKLGDDAF 287


>gi|325128356|gb|EGC51240.1| hypothetical protein NMXN1568_0938 [Neisseria meningitidis N1568]
          Length = 512

 Score = 45.8 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/309 (11%), Positives = 83/309 (26%), Gaps = 22/309 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +F S+  +         LI    V           +     +  E I+D  I+  I   +
Sbjct: 1   MFHSIEKYRTPAQVLLGLIALTFVGFGVSTVSHPGADYIVQVGDEKISDHSINNAIQNEQ 60

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                G       Q L+     KQ  +  GI+  S  +    V        + +   + L
Sbjct: 61  A-DGGGLSRDAVFQSLLQRAYLKQGSKLMGISVSSEQIKQIIVDDPNFHDANGKFDHALL 119

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           ++     +  +     +      ++N          + +   + +      +        
Sbjct: 120 NRYLSQRHMSEDQFVEEIRDQFALQNLV--NLVQNGVLVGDAQAEQLIRLTQVNRTIRSH 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
              PD  +      +  ++    +  +       ++     ++       Q + E+++  
Sbjct: 178 TFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEVKN 237

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            F+  + +   N   P                        KA +  +    K      + 
Sbjct: 238 AFEERVARLPTNEAKP-------------------SFEQEKAAVENELKMKKAVADFNKA 278

Query: 305 VKKLRSNAI 313
            +KL  +A 
Sbjct: 279 KEKLGDDAF 287


>gi|207109059|ref|ZP_03243221.1| hypothetical protein HpylH_06914 [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 240

 Score = 45.8 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 6/154 (3%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           +NG  IT   I +       Q+ +   +  A   LI E +K QEIE+  I  D + ++  
Sbjct: 70  VNGSPITLYQIQEE------QEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQE 123

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
               A+  G+  + F   L  +G    +  Q      +   +          + E ++  
Sbjct: 124 MAMMAQQQGMDLDHFKQMLMAEGHYKLYRDQLKEHLEMQELLRNILLTNVDTSSETKMRE 183

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
              K K        I TV ++  + +   +    
Sbjct: 184 YYNKHKEQFSIPTEIETVRYTSTNQEDLERAMAD 217


>gi|209526676|ref|ZP_03275200.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Arthrospira maxima
           CS-328]
 gi|209492912|gb|EDZ93243.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Arthrospira maxima
           CS-328]
          Length = 254

 Score = 45.8 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/254 (8%), Positives = 61/254 (24%), Gaps = 7/254 (2%)

Query: 62  LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
            L +   +      ++Q L      +  +      +  +       +   N     +   
Sbjct: 5   FLTINDNDSLTLSQSLQYLQNSGKLQDFLANILRQYVIDKELQSRDEVNSNAAAIEQAVI 64

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
           +F  ++ + D    Q    +     +    F  +  N           +K      +  R
Sbjct: 65  NFRLERNLSDPQAFQTWLDE---NRLTYKSFHDQVSNGFKRETLKLAVVKENLEEYFQER 121

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
                            +       +             +++        G    + ++ 
Sbjct: 122 KPFLDSVVLSRIVVDDYEMAESLKSKIASGEGSFEALAREYSLTTERRVNGMMGAVSKAT 181

Query: 242 LHPQFQNLLK-KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH 300
           L    ++ ++         P+  +       I +  D+  E      +  Q      ++ 
Sbjct: 182 LPDTLKSTIEGAKVGQIIGPFEVEGRWCLFRIEEFIDVTLET---KGIKKQLQDELFDRW 238

Query: 301 EAEYVKKLRSNAII 314
             E +K L     I
Sbjct: 239 MNEQLKTLTVKMQI 252


>gi|325185890|emb|CCA20396.1| PpiCtype peptidylprolyl cistrans isomerase putative [Albugo
           laibachii Nc14]
          Length = 177

 Score = 45.4 bits (105), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/104 (12%), Positives = 34/104 (32%)

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
           L       ++ +  V    ++  ES+    K        +        G   Y+ +  + 
Sbjct: 22  LAHARHILVETEDEVVTLYREIHESKHIELKFIRFARTHSQCSLSDRNGDIGYVKQGQMG 81

Query: 244 PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY 287
           P+   +L + + +T +   +  G   + I ++ D       +  
Sbjct: 82  PELNAILFEKELHTVHKVYSPLGWHLLYIIERIDAEALREREQQ 125


>gi|309378619|emb|CBX22797.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 512

 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/309 (9%), Positives = 81/309 (26%), Gaps = 22/309 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +F S+  +         LI    V           +     +  E I++  ++  +   +
Sbjct: 1   MFHSIEKYKTPAQVLLGLIALTFVGFGVSTVSHPGADYIVRVGDEKISEQSLNAAVQNEQ 60

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                        Q L+     KQ  +  GI+  S  +    V          +   + L
Sbjct: 61  A-DGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDAGGKFDHALL 119

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           ++     +  +     +      ++N          + +   + +      +        
Sbjct: 120 NRYLSQRHMSEDQFVEEIRDQFALQNLV--NLVQNGVLVGDAQAEQLIRLTQVNRTIRSH 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
              PD  +      +  ++    +  +       ++     ++       Q + E+++  
Sbjct: 178 TFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEVKN 237

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            ++  + +   N   P                        KA +  +    K      + 
Sbjct: 238 AYEERVARLPANEAKP-------------------SFEQEKAAVENELKMKKAVADFNKA 278

Query: 305 VKKLRSNAI 313
            +KL  +A 
Sbjct: 279 KEKLGDDAF 287


>gi|299783438|gb|ADJ41436.1| Peptidylprolyl isomerase [Lactobacillus fermentum CECT 5716]
          Length = 330

 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/282 (9%), Positives = 73/282 (25%), Gaps = 32/282 (11%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           +       ++    A  ++   T +G  IT+ +    +             K  +Q++I+
Sbjct: 7   LAIIAGLALALPLAACGNKAVATTSGGKITESEYYSSMK-------QTSNGKQVLQQMIL 59

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           + + +++      T + N+    + +   ++  +         K              Q 
Sbjct: 60  DKVLEKQYGSKVSTSEVNSEYNAYKKEYGSSFSTVLSEEGLTAK----------SFKQQI 109

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
               ++K             +    +K +       ++              +       
Sbjct: 110 RSNLLLKAAVRNYSTFSSSALKKQWKKYEPKVQTAEIL----------VGSKETAQSIID 159

Query: 203 KDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYL--LESDLHPQFQNLLKK-SQNNTT 258
                S  +L +     +  ++      + G        ++ L   ++           T
Sbjct: 160 TLNNTSGSKLKEFKKLAKSKSTDTTTKSNGGVLSAFDNTDTSLPSAYRKAAFALKTGEYT 219

Query: 259 -NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
             P  T  G   I +      G   +  + L  Q     +  
Sbjct: 220 TEPVKTDNGYYVIYMIKHPAKGKYSSHISDLKDQIVTQNLNN 261


>gi|195953257|ref|YP_002121547.1| hypothetical protein HY04AAS1_0882 [Hydrogenobaculum sp. Y04AAS1]
 gi|195932869|gb|ACG57569.1| conserved hypothetical protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 436

 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/315 (11%), Positives = 80/315 (25%), Gaps = 22/315 (6%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWA---MSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           + +  V   F +    +    +    S       NG+ I+  D  +R+A+   Q++   L
Sbjct: 14  ILSGIVTAAFFLWNFAAGNITSLFHSSENCIAKANGDCISIADF-RRVAMGTNQQMTPIL 72

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           ++  +  LI + L  ++ +K G       V     Q          +F  +         
Sbjct: 73  KQEILNSLIDDDLLYEQAKKEGFLVSDKEVADIISQDPSFQVDGKFNFDRYKAVLAEAGY 132

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
             + Y     I   +    + L   N              I       +  +       +
Sbjct: 133 TPETY--ESYIKKQLTIQKYTLFVTNASYVSDIELNAANMINNTLLSGKAYIIDPNSVNI 190

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY-LLESDLHPQFQNLLK 251
                 Q+      + +            +          +    L    + P F+   +
Sbjct: 191 NYTPTEQEIEDYYNKHKDEFKIVNPSSIIYWETTDKNKAREIYMALKSGKIPPGFKAFDE 250

Query: 252 KSQNNTTNPYV-------------TQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTK 296
           K+ + T    V                 +        ++         K  +       K
Sbjct: 251 KTMSKTFGAVVKALNPQNPVLVGNVGNNIYIFTYQSTKNAAIMPLSQAKNQVIQDLIMEK 310

Query: 297 IEKHEAEYVKKLRSN 311
                 ++ K + +N
Sbjct: 311 KILALKDFAKNIYNN 325


>gi|291556857|emb|CBL33974.1| PPIC-type PPIASE domain [Eubacterium siraeum V10Sc8a]
          Length = 472

 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/276 (7%), Positives = 77/276 (27%), Gaps = 22/276 (7%)

Query: 47  NGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF 106
           N E I + +       +    +  +        +       Q+     +  D    +   
Sbjct: 171 NDEKILEKEKELFNEYIAGFGLTEDTF-----LMWQTNTAIQKKVNDYLLKDITVSDSEI 225

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
             +       A+            D+ +K+    +      +K   +    +   EI A 
Sbjct: 226 DDYITKLKAEAKQAYEKSASSYATDSEYKKVWIPE--DARYIKYIAVGIASSDYAEINAA 283

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
           + +           R           +     +K     +++          +++++S  
Sbjct: 284 RNESGADDAEIDKKR---------DEKLAEIKEKADAALKKATADGADFDAVVKEYSSAY 334

Query: 227 HDVSIGK--AQYLLESDLHPQFQNLLK--KSQNNTTNPYVTQKGVEYIA-ICDKRDLGGE 281
            + + G+       +  +     + +   +   + +    T  G   +  + D +    +
Sbjct: 335 SESTAGEQILVLNSKGLISDALYDAVFALEKPGDISGLIPTDSGYYIVKYVSDAKVTDSD 394

Query: 282 IAL-KAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           ++  +  +  +   ++  +     +++ RS     Y
Sbjct: 395 LSNYRKTVRQELLTSRQSEKTNAILEEWRSAVNYEY 430


>gi|254712136|ref|ZP_05173947.1| peptidyl-prolyl cis-trans isomerase, putative [Brucella ceti
           M644/93/1]
 gi|261319794|ref|ZP_05958991.1| peptidyl-prolyl cis-trans isomerase [Brucella ceti M644/93/1]
 gi|261292484|gb|EEX95980.1| peptidyl-prolyl cis-trans isomerase [Brucella ceti M644/93/1]
          Length = 226

 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/207 (9%), Positives = 50/207 (24%), Gaps = 34/207 (16%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             ++NG  I + DI         +     L   A    + E L ++              
Sbjct: 51  AVSVNGVTIDEADILTEAQNHPAENPGAALFSAARALAVRELLLQRAR------------ 98

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                                ++ +   D   +      ++   V++ +  +       E
Sbjct: 99  ------------------EIGIEPEHEKDAEGRAETDEDALVRMVIEREVDV-PSASRDE 139

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE-- 220
                +  ++      ++      I  +    +     R      +   + +        
Sbjct: 140 AQRYYENNRHRFTSAPILEASHILIAADPADQETRDAARQTATRLAAAVIAEPATFASVA 199

Query: 221 -KFASKIHDVSIGKAQYLLESDLHPQF 246
            +++S       G    L      P+F
Sbjct: 200 LEYSSCPSGAQGGNLGQLTRGSTVPEF 226


>gi|171463490|ref|YP_001797603.1| hypothetical protein Pnec_0772 [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193028|gb|ACB43989.1| hypothetical protein Pnec_0772 [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 137

 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 14/103 (13%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRI------------RTTINGEVITDGDISKRIALLK 64
              F+  +  +  +      +  S++              T+NG  IT G ++  +  L 
Sbjct: 4   KQLFIFALCVLAGLAHLSVASAQSKVDSKTDPKSDYEFVATVNGSPITQGLLNLNVRALT 63

Query: 65  LQKING--ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
            Q      EL +   ++LI + L  QE  K G   + +  +  
Sbjct: 64  NQGQKDTPELRQAIKEDLINKELIAQEATKLGYAKEIDFPDQI 106


>gi|194864564|ref|XP_001971001.1| GG14671 [Drosophila erecta]
 gi|190652784|gb|EDV50027.1| GG14671 [Drosophila erecta]
          Length = 381

 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/188 (6%), Positives = 41/188 (21%), Gaps = 15/188 (7%)

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                     +S + D +           +           +          ++     +
Sbjct: 77  WEERIAANTKESYFYDTISRKVYFTLPPSDHREAERDAWNGSPRCTLRCRHILVKHNESD 136

Query: 191 ----------KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
                         +  + K ++  +       +        +        G    L  +
Sbjct: 137 RCSSYREPVVNRTKREALHKILQTRDLVGSGESEFAALARTISDCCSARHGGDLGPLRLT 196

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
                F+  +   +    +  + T  G   +    +  +      K     Q   +  +K
Sbjct: 197 QTSFGFEENILLLNTPELSEIFQTNAGYHILW---RTPVHNRKRNKRGSLEQLINS-TKK 252

Query: 300 HEAEYVKK 307
               ++KK
Sbjct: 253 EPKTHLKK 260


>gi|213419168|ref|ZP_03352234.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 170

 Score = 45.4 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 60/152 (39%), Gaps = 8/152 (5%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN--------GEL 72
           +L+   ++   S+ +  +  ++   +N  V+ + D+   +  +KL              L
Sbjct: 7   LLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATL 66

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
               ++ LI++ +  Q  +K G+      ++      A+   ++ +   S L   G+  +
Sbjct: 67  RHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANIAKQNNMTMDQMRSRLAYDGLNYS 126

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
            ++  +  + I  +V  N+   +   L  E+ 
Sbjct: 127 TYRNQIRKEMIISEVRNNEVRRRITVLPQEVD 158


>gi|262199092|ref|YP_003270301.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliangium ochraceum
           DSM 14365]
 gi|262082439|gb|ACY18408.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliangium ochraceum
           DSM 14365]
          Length = 650

 Score = 45.4 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/259 (5%), Positives = 46/259 (17%), Gaps = 13/259 (5%)

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            +R+           L +   ++      +            +         +       
Sbjct: 137 DERLKAWVNGMGLSSLGQFIEEQQRELEAQNMLELIRSAAVSTPEEARARFIYENTKATL 196

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE---MEIPANKQKMKNI 173
           A       D                      V+  +       +    E+   +      
Sbjct: 197 AVVQFRPGDYIRKIVLTPADTQKYLDDNRAEVQAKYDADAALYKGRGKEVQIRQIFFARQ 256

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIG 232
                            + ++   V  R        +          + +         G
Sbjct: 257 KPAVLRPGQEASEPAAGEEEDPALVAARQARVR--IVGGADFAAVASELSEDERTKAKGG 314

Query: 233 KAQYLLESDLH----PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
              +  + +           + +      +      +G     I   R+          +
Sbjct: 315 YLGWRSQENPGLGARELADGIKELGAGEVSEVISVPRGFYVFKIEGVREGDL---SFDQV 371

Query: 289 SAQNTPTKIEKHEAEYVKK 307
           + +       +  A+   +
Sbjct: 372 ALELAEQMAVESYAKLAAQ 390



 Score = 44.3 bits (102), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/112 (9%), Positives = 33/112 (29%), Gaps = 5/112 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIV----SYKSWAMSSRIRTTINGEVITDGDI 56
           M  ++  +   F+  +    ++  F          S+     S+    T++ E +    +
Sbjct: 1   MLEQLRQNSRSFLIWILFGIIIAAFVFTFGTQSDVSFSCTGPSADYAMTVDDEEVGIPAL 60

Query: 57  SKRIALLKLQKINGELEKI-AVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
              +  +     +       A+  L+   +  Q   ++G    +        
Sbjct: 61  RYGLNTIGRSGQSKAQRAQFALDGLLKREILAQASAEAGFHVSNEMAQIAIR 112


>gi|298243928|ref|ZP_06967735.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ktedonobacter
           racemifer DSM 44963]
 gi|297556982|gb|EFH90846.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ktedonobacter
           racemifer DSM 44963]
          Length = 485

 Score = 45.4 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/246 (5%), Positives = 52/246 (21%), Gaps = 15/246 (6%)

Query: 57  SKRIALLKLQKINGELEKIA---VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
             +  +   Q     L+  A   +Q  I    +     +              ++     
Sbjct: 174 DAQAKVKDTQTKKDTLDAQANNILQNQIPNAKQLYTQSQVANDSSDWLQQDAMIRQWEAN 233

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
             +            I            S      +        + ++      +  ++ 
Sbjct: 234 QGTNVRTQINPAPNTITQAFNAFKADTASSNGGYSQFLSSDNVSDQDIHDMITIKVRRDN 293

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIG 232
             +    + +  +            Q   + A +   +       ++  +  ++ +   G
Sbjct: 294 MQKYLAGQYITPAYQVQARGMTLDTQADAQKALDRLHKGDDFAKVVKDMSKDVNTNTKGG 353

Query: 233 KAQYLLESDL-----------HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
              +L+                  +    ++  N  +           + I   +     
Sbjct: 354 DFGWLVNGQYSLDYAQKVGGVVDNWLFASQRKVNELSPIISDAGAFHIVQITGIQQSRAV 413

Query: 282 IALKAY 287
            + K  
Sbjct: 414 DSAKLQ 419


>gi|209885424|ref|YP_002289281.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oligotropha
           carboxidovorans OM5]
 gi|209873620|gb|ACI93416.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oligotropha
           carboxidovorans OM5]
          Length = 704

 Score = 45.4 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 61/233 (26%), Gaps = 19/233 (8%)

Query: 1   MTSKVFTSLSD----FIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD- 55
           M   +    S+    +I  L    ++I F +  I      +       T+    I+    
Sbjct: 71  MLRGIRNVTSNRVGKWIMSLLFGVLIISFAVWGIADIFKGSTQ-TTLATVGNTEISMEQF 129

Query: 56  -------ISKRIALLKLQKINGE-----LEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
                  + +    ++      +     L++  +Q+ I E    +E  + G+T     + 
Sbjct: 130 RTAYTDKLQQISRQIRRPINANQGRAFGLDRQLLQQTIAEAALDEETRRLGLTMSDAEMI 189

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE-ME 162
                     G   +  +         + + +Q    +     + +         LE  +
Sbjct: 190 RTISGDPTFAGPDGKFDARRFAAAIRDNGYTEQRYVAEQRRVTLRRELVSSIVAGLEPSK 249

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
                        R      +              V     D  +++ R P+ 
Sbjct: 250 TQIEALSRFQNEQRTIDYAKIGPEQAGTIETPSQQVLDTYYDEHKAQFRAPEY 302


>gi|163781565|ref|ZP_02176565.1| hypothetical protein HG1285_01743 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882785|gb|EDP76289.1| hypothetical protein HG1285_01743 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 289

 Score = 45.4 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 5/128 (3%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS 99
            R+   +NGE I + ++        ++          ++ LI + L  Q +  +G+    
Sbjct: 35  DRVVANVNGEPILESELKVAQMFYGVKD-----RDKLIELLIQKHLIAQFLRDNGLKVPE 89

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
             V+      AR+ G S ++    L  +G+     + +L ++      ++   M +    
Sbjct: 90  GYVDTLIEDIARSNGKSVDELYRELYSKGLSPADLRSFLEVEVASTLGLREYLMSRVEVS 149

Query: 160 EMEIPANK 167
           ++EI   +
Sbjct: 150 DIEIEIER 157


>gi|186683556|ref|YP_001866752.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nostoc punctiforme
           PCC 73102]
 gi|186466008|gb|ACC81809.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nostoc punctiforme
           PCC 73102]
          Length = 251

 Score = 45.4 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/164 (8%), Positives = 38/164 (23%), Gaps = 3/164 (1%)

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
                +   D+        +     +          Y+     +            + + 
Sbjct: 85  LAHQRISVEDWSEIIRISLLSQKLKEHLFGVAVDDHYINNRDSYKRVALSQILVRDLTEA 144

Query: 202 IKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQ-YLLESDLHPQFQNLLKKSQNNTTN 259
           +K  +  R +    C    +++       +        L   L      +          
Sbjct: 145 MKITKALRDKKDSFCALALEYSQGKQSKENGAFVGIRFLTELLPEITNAIADIDVGELVG 204

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAE 303
           P  TQ G   + + +K        ++  +        +E+  A 
Sbjct: 205 PIQTQLGYHILRV-EKWFPSDLSEIREQILEFLFINWLEERTAS 247


>gi|332291258|ref|YP_004429867.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332169344|gb|AEE18599.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 713

 Score = 45.4 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/132 (9%), Positives = 35/132 (26%), Gaps = 1/132 (0%)

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
             + +                        +             +    K     ++F+S 
Sbjct: 351 KSRHILIDFKGAVTNTQRGPVPSSATRTKEEAKNLADSLLSVIKRNSGKFEELAKEFSSD 410

Query: 226 IHD-VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL 284
             +  + G   Y   +     +++ +  ++  +     T  G   I I D+++L   I +
Sbjct: 411 KSNSENGGDLDYQNPNLFAEGYRDFIVDNKTGSVGIAETNFGYHVIEITDQKNLQDVIKV 470

Query: 285 KAYLSAQNTPTK 296
              +       K
Sbjct: 471 ATVVKEIVPSDK 482



 Score = 43.5 bits (100), Expect = 0.045,   Method: Composition-based stats.
 Identities = 24/251 (9%), Positives = 64/251 (25%), Gaps = 6/251 (2%)

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE--DFSSFLDKQ 127
              ++  +Q++I      +EI  S  T  S        + A   G   E    + +  + 
Sbjct: 457 EITDQKNLQDVIKVATVVKEIVPSDKTISSIYNTTQKFELAAQDGDFQEVATENGYTVRP 516

Query: 128 GIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSI 187
                   + L  +     +V+  F  +    +++            V     +      
Sbjct: 517 VQRIRAMDENLPGEGAQRSIVQWAFEEEVSVGDIKRFPVNNGYIVAQVTRRTPKGTERVE 576

Query: 188 PDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA---SKIHDVSIGKAQYLLESDLHP 244
             +          +     + +L         +  +        +S+         +   
Sbjct: 577 DVSTQVTPILRNMKKAAIIKDKLSGATLAEMAQSQSQTVKTASAISMNAPTIAGAGNEPK 636

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
                    +   ++P    +GV  + +    +        A  + Q          ++ 
Sbjct: 637 VVGAAFGLKEGEISDPIEGSRGVYVVQVTKITEAPALE-NYASFATQEAQKARVAVSSKV 695

Query: 305 VKKLRSNAIIH 315
           +  L+  A I 
Sbjct: 696 LNALKEAAEIE 706


>gi|209542341|ref|YP_002274570.1| peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530018|gb|ACI49955.1| peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 643

 Score = 45.4 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/172 (11%), Positives = 48/172 (27%), Gaps = 18/172 (10%)

Query: 1   MTSKVFTS-LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSR--IRTTINGEVIT----D 53
           M S +  + +  ++  +    + + F    +    S   S R  +   +  + IT     
Sbjct: 1   MISFLRHAFVDSWLGRIIAGLLFLAFVGWGVGDVLSNIGSERADVVARVGDQTITTDSFL 60

Query: 54  GDISKRIALLKLQKINGELEKI-----------AVQELIVETLKKQEIEKSGITFDSNTV 102
             +   +  L  Q   G+  +I            +Q L+ ++       + G+T   + +
Sbjct: 61  SAVQNELQQLARQMGVGDPSQIPAAARGQAAQQVLQRLVTQSEMILAAGRLGVTVPDDVL 120

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
                      G       +  D +       +  L         V+     
Sbjct: 121 RDEVFGLQIFKGPDGRFDRALFDSRLRQIGMTEARLLDIVRTDLAVRALVEP 172


>gi|162147717|ref|YP_001602178.1| peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786294|emb|CAP55876.1| Peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 643

 Score = 45.4 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/172 (11%), Positives = 48/172 (27%), Gaps = 18/172 (10%)

Query: 1   MTSKVFTS-LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSR--IRTTINGEVIT----D 53
           M S +  + +  ++  +    + + F    +    S   S R  +   +  + IT     
Sbjct: 1   MISFLRHAFVDSWLGRIIAGLLFLAFVGWGVGDVLSNIGSERADVVARVGDQTITTDSFL 60

Query: 54  GDISKRIALLKLQKINGELEKI-----------AVQELIVETLKKQEIEKSGITFDSNTV 102
             +   +  L  Q   G+  +I            +Q L+ ++       + G+T   + +
Sbjct: 61  SAVQNELQQLARQMGVGDPSQIPAAARGQAAQQVLQRLVTQSEMILAAGRLGVTVPDDVL 120

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
                      G       +  D +       +  L         V+     
Sbjct: 121 RDEVFGLQIFKGPDGRFDRALFDSRLRQIGMTEARLLDIVRTDLAVRALVEP 172


>gi|284052749|ref|ZP_06382959.1| hypothetical protein AplaP_14868 [Arthrospira platensis str.
           Paraca]
 gi|291566013|dbj|BAI88285.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 246

 Score = 45.4 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 85/266 (31%), Gaps = 34/266 (12%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           IT  DI K++ L              ++ +I   +      ++GI  ++  +        
Sbjct: 7   ITAEDILKQVKLSIQIPD-------LIESIISRKIITDAATEAGIKVETEELQKAADTMR 59

Query: 111 R-NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
                 SA++  ++L+K  +  +  ++   +  I   +V + F  K              
Sbjct: 60  SLQNLHSAQETFAWLEKHHLSVDDLEEVAYMSIISQKLVAHLFADKV-------EPYFYD 112

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
            +       +   VL         ++    +     +E  +      +K  +        
Sbjct: 113 NQLDYAGVVMYEVVL--------DDEDLAMELFYAIQEGEMSFYDVAHKYIQDVE--LRR 162

Query: 230 SIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
             G    L   DL P+    +   +      P VT KGV  I + D         ++A L
Sbjct: 163 QGGYRGVLSRKDLQPEVSAAVFAATPPQLVKPIVTSKGVHLILVEDI--------IQAEL 214

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNAII 314
             +     +    +E+VKK   +A I
Sbjct: 215 DNKLRFQIVSDLFSEWVKKKVDSADI 240


>gi|225850233|ref|YP_002730467.1| hypothetical protein PERMA_0679 [Persephonella marina EX-H1]
 gi|225646664|gb|ACO04850.1| hypothetical protein PERMA_0679 [Persephonella marina EX-H1]
          Length = 461

 Score = 45.4 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 39/352 (11%), Positives = 102/352 (28%), Gaps = 40/352 (11%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M +K+  S      L  T F  +    V IV YK     +     +NG  I+  +   ++
Sbjct: 1   MFAKIAESKWMKFVLFITTFAFVGTAFVAIVIYKFAGNITG-AAVVNGREISLQEFYYQV 59

Query: 61  ALLKLQKING---------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
            +++ +  N          E+   A++ +I   L  QE EK GI      V    +    
Sbjct: 60  NVIQNRLENQGVDTAPLKKEIYDQALEAVIDRELLYQEAEKEGIAATKEEVKRAILDVEA 119

Query: 112 NTGLSAEDFSSFLD--KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
                      ++             + +  + +    +       +   + EI +   K
Sbjct: 120 FKEDGRFSKDRYIALLSGMNISPQLFEEIVRKDLSAQHLFTFLDASFYLSDEEINSYVYK 179

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
             +    ++L           +   + + + + +   +    +      ++K   +  + 
Sbjct: 180 QLSKLSGDFLYIKPQPLKISEEEAKRYYEKHKSEYTGKEGKEVIIYRIDIDKNNQEKSEK 239

Query: 230 SIGKAQ--------YLLESDLHPQFQNLLKKSQNNTTNP-------------------YV 262
                          +   D+   F++++    ++ +N                      
Sbjct: 240 LAKDLFLRLKKGETEIKNEDIKIIFKDVIYDDTDSISNIPEELKKKLKEISPDKNIIFVK 299

Query: 263 TQKGVEYIA-ICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI 313
           T         I   ++      +K  + ++      ++   E  +K+   + 
Sbjct: 300 TDDAYYLSRFIRAVKEPLPYEKVKDEIYSKLKEDYEKRAVKELYEKISKESD 351



 Score = 36.6 bits (82), Expect = 5.2,   Method: Composition-based stats.
 Identities = 29/270 (10%), Positives = 76/270 (28%), Gaps = 18/270 (6%)

Query: 50  VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
            I++ +  +     K +    E +++ +  +        +I+K+            F++ 
Sbjct: 197 KISEEEAKRYYEKHKSEYTGKEGKEVIIYRI--------DIDKNNQEKSEKLAKDLFLRL 248

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
            +       +    + K  I D+        + +   + +         ++ +      +
Sbjct: 249 KKGETEIKNEDIKIIFKDVIYDDTDSISNIPEELKKKLKEISPDKNIIFVKTDDAYYLSR 308

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA---SKI 226
                        V   I     ++      +    + S+       + ++K+     KI
Sbjct: 309 FIRAVKEPLPYEKVKDEIYSKLKEDYEKRAVKELYEKISKESDKGIQSLMKKYDGKLEKI 368

Query: 227 HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEI--AL 284
            D ++     +         +  +K  +         + G+    I        E    L
Sbjct: 369 KDETVRDLI-VRYGLTPEYMKLFIKDREG----IIPLKDGILVYKIDKVTPPTDEESGEL 423

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           K  +       K       Y+ KLR +A I
Sbjct: 424 KKLVEPLLKNEKYNTLVQMYIDKLRKDAEI 453


>gi|226199062|ref|ZP_03794624.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei Pakistan 9]
 gi|225928837|gb|EEH24862.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
           pseudomallei Pakistan 9]
          Length = 71

 Score = 45.4 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 2/54 (3%)

Query: 256 NTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
             + P     G   + + DKRD+         +  Q            ++ +LR
Sbjct: 13  GFSMPIRGSNGYHLLYVRDKRDIVA--PSLDQIREQLIELARVDKFERHLCELR 64


>gi|160871799|ref|ZP_02061931.1| putative peptidyl prolyl cis-trans isomerase D [Rickettsiella
           grylli]
 gi|159120598|gb|EDP45936.1| putative peptidyl prolyl cis-trans isomerase D [Rickettsiella
           grylli]
          Length = 484

 Score = 45.4 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 69/241 (28%), Gaps = 20/241 (8%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSW--AMSSRIRTTINGEVITDGDISK 58
           M   +      +I       ++IIF +  I  Y  +  + +++I   I G+++   D  K
Sbjct: 1   MLQSIRDKSQGWITNTVIGLLIIIFALWGIHGYVVFHESGNNKIVAKIAGQLLRQSDFEK 60

Query: 59  RIALLKLQKIN-------------GELEKIAVQELIVETLKKQEIEKSGITFDS---NTV 102
                  Q  +               L++  V+E  +  +      +S         ++ 
Sbjct: 61  IYQRAYQQNRDYLNQSFSHDKKKVEALKEQVVREWEITQVLVYAALQSKYRISQTLIDSF 120

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                        S E F S L         F + +    +   V +         L  +
Sbjct: 121 LLQVPAFQSAGQFSIEKFYSVLRANDYTKLEFLEEIKKMLLINQVQQG-ITQSAFVLPQD 179

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           I    +         YLI      +    + +        ++ ++   +  +   +  + 
Sbjct: 180 IRNYIEYNHQKRDFSYLIVPYSMFLNQQNIPDSRIFA-YYQENKQLFRQPEQVSIEYVQL 238

Query: 223 A 223
           +
Sbjct: 239 S 239


>gi|148262337|ref|YP_001229043.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           uraniireducens Rf4]
 gi|146395837|gb|ABQ24470.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
           uraniireducens Rf4]
          Length = 93

 Score = 45.4 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 8/82 (9%), Positives = 22/82 (26%), Gaps = 1/82 (1%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQN 255
             ++  +D ++             + +S       G         +  +F   +      
Sbjct: 12  ASKEVCEDLKKQIEAGADFAAVAREHSSCPSGKQGGGLGEFGPGQMVKEFDQAVFTGEVG 71

Query: 256 NTTNPYVTQKGVEYIAICDKRD 277
               P  TQ G   + +  + +
Sbjct: 72  KVLGPIQTQFGYHLLEVTSRTE 93


>gi|261365094|ref|ZP_05977977.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria mucosa ATCC
           25996]
 gi|288566520|gb|EFC88080.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria mucosa ATCC
           25996]
          Length = 511

 Score = 45.1 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 64/223 (28%), Gaps = 5/223 (2%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +F ++  +         LI    +      +    S     +  E I+D  ++  +   +
Sbjct: 1   MFHTVEKYKTPAQILLGLIALTFIGFGVETARNSGSDYIVKVGSEKISDHTLNNAVQAEQ 60

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV----QHARNTGLSAEDF 120
                G+  +     L+     K+  +  GI    + V    V     H  N   S   F
Sbjct: 61  A-AGGGQSREAIFSGLVQRAYLKEGAKMMGIDVSMDQVKQAIVDDPAFHDANGKFSQALF 119

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
           + +L ++ + ++ F   L  Q    +++         +        K    N T+R +  
Sbjct: 120 TQYLSQRHMSEDQFIDDLREQFALQNLINLVQNGAIISDSQAEQLIKLTQSNRTIRSFTF 179

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
           R   F+                   +    +  K        A
Sbjct: 180 RPETFAAQVKTDDATLQRYYESHKKDYLIPQAVKLEYVALNAA 222


>gi|309390238|gb|ADO78118.1| SurA domain protein [Halanaerobium praevalens DSM 2228]
          Length = 241

 Score = 45.1 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 81/232 (34%), Gaps = 33/232 (14%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSS-----RIRTTINGEVITDGDISKRIALLKLQK 67
           +K     F+L+   +VP+  +     S      ++   +NGE IT  ++++   L ++ +
Sbjct: 1   MKKFLVSFLLLTVLMVPMNVFAQDVDSDSKQEPKVVAVVNGEEITAQELAQNAKLNQILR 60

Query: 68  INGELEKIA---------------------VQELIVETLKKQEIEKSGITFDSNTVNYFF 106
              ++++                       +  LI  TL KQ ++ S I      ++  +
Sbjct: 61  QLSQVDQQLVKLLTNSEAGNKVLADLRKAKLDSLIDNTLLKQAVKDSDINLSQEEIDEIY 120

Query: 107 VQHA----RNTGLSAEDFSSFLDKQGIGD---NHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
            +      +   +  + F S L KQG  +      +     Q     +++ + +      
Sbjct: 121 NKQKSSILKQNKMDEKQFLSVLKKQGFENEAAYKNEFANNPQIKINKLIEKEVVDNIEVS 180

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
           E EI    ++ K+   +     +     P  +   +   Q +       +LR
Sbjct: 181 EKEIKEAYEQNKDAFAQTGQDVSYEQIKPRLEQMLKQQKQNQAIKEYLEKLR 232


>gi|315149423|gb|EFT93439.1| putative foldase protein PrsA [Enterococcus faecalis TX0012]
          Length = 341

 Score = 45.1 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/292 (7%), Positives = 68/292 (23%), Gaps = 36/292 (12%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +L     + + S  + +  S+   T+ G  IT  D   +I             + 
Sbjct: 1   MKKKLILAAAGAMAVFSLAACSSGSKDIATMKGSTITVDDFYNQIK-------EQSTSQQ 53

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           A  ++++  + +++             +    +   +     E                +
Sbjct: 54  AFSQMVIYKVFEEKYGD-------KVTDKAIQKKFDDAKKQVEAQGGKFSDALTQAGLTE 106

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    Q    + ++          + ++                                
Sbjct: 107 KSFKKQLKQTEAMQVGLKNHLKITDEDLKTAWASFHPE------------VEAQIIQVAS 154

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQ 254
               K +K          K        A+       GK ++  +S +  + +    K   
Sbjct: 155 EDDAKAVKKEITDGGDFTKIAKDKSTDAT--TKKDGGKIKFDSQSTIPTEVKEAAFKLKD 212

Query: 255 NNTTNPYVTQKG------VEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEK 299
              + P               + +   +  G +    +  +       K+  
Sbjct: 213 GEVSEPIAATNAQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKIAEKEKLSD 264


>gi|301091484|ref|XP_002895926.1| PpiC-type peptidyl-prolyl cis-trans isomerase, putative
           [Phytophthora infestans T30-4]
 gi|262096055|gb|EEY54107.1| PpiC-type peptidyl-prolyl cis-trans isomerase, putative
           [Phytophthora infestans T30-4]
          Length = 114

 Score = 45.1 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 6/96 (6%), Positives = 24/96 (25%)

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
             + ++  ++     +        +  +           E+     K     ++ +    
Sbjct: 15  CCIASVAGQDAAPVAIQAHASHILVDTEAEADDLSVQLGEASNLFLKFAQLAKEHSKCPS 74

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVT 263
               G         + P+F  +  + +    +   T
Sbjct: 75  SRKGGDLGTFDRGQMVPEFDKVAFEGEIGVVHKVKT 110


>gi|325685772|gb|EGD27846.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 313

 Score = 45.1 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/310 (10%), Positives = 78/310 (25%), Gaps = 33/310 (10%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING 70
           +F+K       ++       +S  + + SS       G  IT  +  + +          
Sbjct: 5   NFMKKHLKKIAVLAGAAAIGLSTAACSSSSATVVNYKGGKITQDEYYEAMKDTSA----- 59

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
              +  +  LI+    K +      +   N     + +   +   +   +S         
Sbjct: 60  --GQSTLVSLIIYRTLKAQYGDKVSSKKINAEYNKYKKQYGSNFSTVLSYSGLT------ 111

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                +                         +     +     T            +   
Sbjct: 112 ----TKSFKQNLATNLYSVAALKDLKKPTTTQEKNWWKSYHTKTT------VQHIVVDKK 161

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL 250
                   + +   +  +  +        +K A K+             + L   F++ +
Sbjct: 162 STAETVIKKLKSGTSFATLAKKYSTDTATKKKAGKLAAFDSTD------TSLSSTFKSAV 215

Query: 251 KKSQNN--TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT--KIEKHEAEYVK 306
            K +    TT P  T  G E I +    + G     K+++  Q             + + 
Sbjct: 216 WKLKEGEYTTTPVKTSSGYEVIKVLKTTEKGSYTKNKSFIDKQLYAKWAADSNTMTKIIS 275

Query: 307 KLRSNAIIHY 316
           K+   A ++ 
Sbjct: 276 KVLKKANVNI 285


>gi|218247468|ref|YP_002372839.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cyanothece sp. PCC
           8801]
 gi|257061196|ref|YP_003139084.1| hypothetical protein Cyan8802_3421 [Cyanothece sp. PCC 8802]
 gi|218167946|gb|ACK66683.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cyanothece sp. PCC
           8801]
 gi|256591362|gb|ACV02249.1| hypothetical protein Cyan8802_3421 [Cyanothece sp. PCC 8802]
          Length = 243

 Score = 45.1 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/256 (12%), Positives = 79/256 (30%), Gaps = 26/256 (10%)

Query: 50  VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
            ITD +I K++ L              ++ +I   +  +E    GI  ++  +     Q 
Sbjct: 6   AITDEEILKQVKLSGKI-------PEIIEGIINRQIITEEATNLGIKVETEELQQAADQF 58

Query: 110 A-RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
                  SA D   +L+K  +  + F++ L    +   +  + F         +I A   
Sbjct: 59  RLSKNLHSANDTHQWLEKNQLSVDDFEEMLYCTILSGKLANHLFN-------DQIEAYFY 111

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
           + +       +   +L +            ++ +   + +   +                
Sbjct: 112 QNQLNYAEVVMYEVILDNEDLAMELYYAIDEEEMSFWDVAHHYIQDQEL----------R 161

Query: 229 VSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY 287
              G  + +   DL P+    +   +      P +T +GV  + + +          +  
Sbjct: 162 RKGGYLETVKRQDLKPEISAAVFAATPPELLKPIMTSQGVHLVFVEEIIQPVLNEKKRYQ 221

Query: 288 LSAQNTPTKIEKHEAE 303
           + A      +++   E
Sbjct: 222 ILADLFSQWVKQKSEE 237


>gi|260807929|ref|XP_002598760.1| hypothetical protein BRAFLDRAFT_212895 [Branchiostoma floridae]
 gi|229284035|gb|EEN54772.1| hypothetical protein BRAFLDRAFT_212895 [Branchiostoma floridae]
          Length = 56

 Score = 45.1 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 7/52 (13%)

Query: 232 GKAQYLLESDLHPQFQNLLKKSQNNTT-------NPYVTQKGVEYIAICDKR 276
           G   ++    +   FQ+     Q +TT        P  T+ G   I I  K+
Sbjct: 4   GDLGWMTRGSMVGPFQDAAFALQPSTTQKPVYTNPPIRTKHGYHVIMIEGKK 55


>gi|85374123|ref|YP_458185.1| peptidyl-prolyl isomerase [Erythrobacter litoralis HTCC2594]
 gi|84787206|gb|ABC63388.1| peptidyl-prolyl isomerase [Erythrobacter litoralis HTCC2594]
          Length = 647

 Score = 45.1 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/259 (8%), Positives = 61/259 (23%), Gaps = 8/259 (3%)

Query: 59  RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
           R A+ +    +  +       LI + +       + I     +      +  R   ++  
Sbjct: 143 RAAIARQGLTDAVVRDDLGDGLIAQQVLVPGSFGATIPDKLASRYAALFKERRRGAIALI 202

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
             +SF       D   + Y           +   +      E  +              Y
Sbjct: 203 PSTSFAPDGEPTDAQVQAYYNANKGDYIRPERRVIRYATFGESAVADVGTPTAAEIANRY 262

Query: 179 LIRTVLFSIPDNKLQNQGFV--QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
                 ++  + +   Q  V  Q+  +   +             +  + +    IG    
Sbjct: 263 EQDASRYAASEERTLTQLIVPTQQAAQTFRDRVAGGASLETVARE--AGLEAQQIGPIDR 320

Query: 237 LLESDLHPQFQNLLKK--SQNNTTNPYVTQKGVEYIAICD--KRDLGGEIALKAYLSAQN 292
                             ++        +  G   + + D  + +       +  + +  
Sbjct: 321 SEYGAQASAQVAQAVFGTARGQVAPVARSGLGWHVVRVDDVNRIEGRSLAQAREEIVSTL 380

Query: 293 TPTKIEKHEAEYVKKLRSN 311
           T  +  +   E  + +   
Sbjct: 381 TQERRRRAFNELAESIEDR 399


>gi|23097538|ref|NP_691004.1| protein secretion protein [Oceanobacillus iheyensis HTE831]
 gi|22775761|dbj|BAC12039.1| protein secretion (post-translocation molecular chaperone)
           [Oceanobacillus iheyensis HTE831]
          Length = 303

 Score = 45.1 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/283 (9%), Positives = 76/283 (26%), Gaps = 35/283 (12%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS 99
           +    T+ GE I+  +    +  ++ QK         ++++I + +     E+ GI    
Sbjct: 45  NEAVATVAGEEISYDEWMTGLRNMQGQKH--------LKQMIDKEVVNTLAEQEGIEVSE 96

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
             ++          G+  ED +   +++   +  ++            ++          
Sbjct: 97  KIIDREVSFLYTMQGILTEDDAVEEEERWREEIKYRYQ----------LEQLLTKNIEIP 146

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
           E E+ +      N       ++     + D +   Q           +            
Sbjct: 147 EEELRSYYDTYGNQYDFSSSVKLSHILVEDMETAEQV---------YQELEDGASFRLLA 197

Query: 220 EKFA-SKIHDVSIGKAQYLLESD---LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK 275
            +++       + G    +  S    L            +  + P+  + GV  + +  K
Sbjct: 198 REYSIDDETRQNGGYMGSIYTSSQFLLDSYETQAANMENHTYSEPFQAENGVAIMYLHRK 257

Query: 276 RDLGGEIALKAYLSAQNTPT--KIEKHEAEYVKKLRSNAIIHY 316
                       +           E+       +L     I +
Sbjct: 258 LPAIKFT--YDEVQPYVHSEVAMHEEGLTLEADQLWEEVDIEW 298


>gi|307289621|ref|ZP_07569565.1| putative foldase protein PrsA [Enterococcus faecalis TX0109]
 gi|306499435|gb|EFM68808.1| putative foldase protein PrsA [Enterococcus faecalis TX0109]
 gi|315164537|gb|EFU08554.1| putative foldase protein PrsA [Enterococcus faecalis TX1302]
          Length = 362

 Score = 45.1 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/315 (8%), Positives = 79/315 (25%), Gaps = 41/315 (13%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K +    +L     + + S  + +  S+   T+ G  IT  D   +I             
Sbjct: 19  KRMKKKLILAAAGAMAVFSLAACSSGSKDIATMKGSTITVDDFYNQIK-------EQSTS 71

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           + A  ++++  + +++             +    +   +     E               
Sbjct: 72  QQAFSQMVIYKVFEEKYGD-------KVTDKAIQKKFDDAKKQVEAQGGKFSDALTQAGL 124

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
            ++    Q    + ++          + ++             + +              
Sbjct: 125 TEKSFKKQLKQAEAMQVGLKDHLKITDEDLKTAWASFHPEVEAQII-------------- 170

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQF--QNLL 250
            Q   +   K  ++            +  +         GK ++  +S   P    +   
Sbjct: 171 -QVASEDDAKAVKKEITDGGDFAKIAKDKSTDAATKKDGGKIKFDSQSTTVPAEVKEAAF 229

Query: 251 KKSQNNTTNPYVTQKG------VEYIAICDKRDLGGE-IALKAYLSAQNTPTKI--EKHE 301
           K      + P               + +   +  G +    +  +      TK+  +  +
Sbjct: 230 KLKDGEVSEPIAATNAQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKIAEDTKLADQTFQ 289

Query: 302 AEYVKKLRSNAIIHY 316
           A+ +      A +  
Sbjct: 290 AKVISDELKAANVKI 304


>gi|315173979|gb|EFU17996.1| putative foldase protein PrsA [Enterococcus faecalis TX1346]
          Length = 362

 Score = 45.1 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/315 (8%), Positives = 79/315 (25%), Gaps = 41/315 (13%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K +    +L     + + S  + +  S+   T+ G  IT  D   +I             
Sbjct: 19  KRMKKKLILAAAGAMAVFSLAACSSGSKDIATMKGSTITVDDFYNQIK-------EQSTS 71

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           + A  ++++  + +++             +    +   +     E               
Sbjct: 72  QQAFSQMVIYKVFEEKYGD-------KVTDKAIQKKFDDAKKQVEAQGGKFSDALTQAGL 124

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
            ++    Q    + ++          + ++             + +              
Sbjct: 125 TEKSFKKQLKQAEAMQVGLKDHLKITDEDLKTAWASFHPEVEAQII-------------- 170

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQF--QNLL 250
            Q   +   K  ++            +  +         GK ++  +S   P    +   
Sbjct: 171 -QVASEDDAKAVKKEITDGGDFAKIAKDKSTDAATKKDGGKIKFDSQSTTVPAEVKEAAF 229

Query: 251 KKSQNNTTNPYVTQKG------VEYIAICDKRDLGGE-IALKAYLSAQNTPTKI--EKHE 301
           K      + P               + +   +  G +    +  +      TK+  +  +
Sbjct: 230 KLKDGEVSEPIAATNAQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKIAEDTKLADQTFQ 289

Query: 302 AEYVKKLRSNAIIHY 316
           A+ +      A +  
Sbjct: 290 AKVISDELKAANVKI 304


>gi|116495203|ref|YP_806937.1| parvulin-like peptidyl-prolyl isomerase [Lactobacillus casei ATCC
           334]
 gi|191638713|ref|YP_001987879.1| Protein maturation protease (Peptidylprolyl isomerase)
           [Lactobacillus casei BL23]
 gi|227534778|ref|ZP_03964827.1| peptidylprolyl isomerase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|239632085|ref|ZP_04675116.1| protein maturation protease [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|116105353|gb|ABJ70495.1| Parvulin-like peptidyl-prolyl isomerase [Lactobacillus casei ATCC
           334]
 gi|190713015|emb|CAQ67021.1| Protein maturation protease (Peptidylprolyl isomerase)
           [Lactobacillus casei BL23]
 gi|227187534|gb|EEI67601.1| peptidylprolyl isomerase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|239526550|gb|EEQ65551.1| protein maturation protease [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|327382753|gb|AEA54229.1| Peptidyl-prolyl cis-trans isomerase [Lactobacillus casei LC2W]
 gi|327385940|gb|AEA57414.1| Peptidyl-prolyl cis-trans isomerase [Lactobacillus casei BD-II]
          Length = 300

 Score = 45.1 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/283 (11%), Positives = 73/283 (25%), Gaps = 36/283 (12%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +  + + ++   V +        SS     + G  +T  +    +             + 
Sbjct: 1   MKKWILGVVGLFVAV---TLAGCSSSTVANMKGAKVTKDEYYDAMK-------KTTTGQA 50

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            ++ +IV    +Q+          N+      +   ++  +  + + + +          
Sbjct: 51  TLRNMIVLKALEQQYPNKVSDKKVNSQFNTLKKQYGSSFDTTLEQNGYTESSFKDQIRTT 110

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
                       + ++  LK      E     Q  K           V         + +
Sbjct: 111 ------------LYSEVALKALKKPTEKQIAAQWKKYQPKITVQHILV---------KTE 149

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL--LESDLHPQFQNLLKK- 252
              ++ I D ++       +    +           GK       ++ L   F+    K 
Sbjct: 150 DEAKQIISDYQKDPTEKNFEALAKKNSIDTGTKDKGGKLTAFDNTDTSLDSTFKKAAFKL 209

Query: 253 -SQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNT 293
               + T  P  TQ G   I +      G     K  L  Q  
Sbjct: 210 TKAGDITTTPVKTQYGYHVIRVISVGKKGTMKEHKKDLENQLY 252


>gi|315641846|ref|ZP_07896850.1| peptidyl-prolyl cis-trans isomerase [Enterococcus italicus DSM
           15952]
 gi|315482521|gb|EFU73060.1| peptidyl-prolyl cis-trans isomerase [Enterococcus italicus DSM
           15952]
          Length = 341

 Score = 45.1 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/300 (12%), Positives = 67/300 (22%), Gaps = 39/300 (13%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +     +     +  +     +      + S     T+ G  IT  D      L    + 
Sbjct: 1   MGVLKNMKKKLILATLGLFSVMTLAACSSSSDETIATMKGNKITVSDFYAEAKLTSANQQ 60

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
                           + +   +K G       V+  + Q A+  G S E        Q 
Sbjct: 61  LAR----------NMIIYQAFEDKYGDKVSQKQVDKQYNQTAKQYGDSFES-------QL 103

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
               + K            ++          + +  A  +        + +         
Sbjct: 104 ESAGYTKDSYKKAIKQQLAMEAGLKAHVKLTDADYKAAWESFHPEVEAQIIQVAS----- 158

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ--F 246
                     + +    E S+          EK          GK  +   S   P    
Sbjct: 159 --------EDEAKEVKTEASKDGADFAKIAKEKSTDSTTKEDGGKVTFDSTSTTIPAEVQ 210

Query: 247 QNLLKKSQNNTTNPYVTQK------GVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEK 299
               K      ++P               I +      G ++   K  L    T TKI  
Sbjct: 211 AAAWKLKDGEISDPIAVTNSSTYTQSYYIIKMVKTSSKGNDMNKYKKTLKTIATNTKIND 270


>gi|118581468|ref|YP_902718.1| hypothetical protein Ppro_3065 [Pelobacter propionicus DSM 2379]
 gi|118504178|gb|ABL00661.1| conserved hypothetical protein [Pelobacter propionicus DSM 2379]
          Length = 527

 Score = 45.1 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 45/153 (29%), Gaps = 2/153 (1%)

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
              K++     +      + +  +   +    V      AE++  +L        +  S 
Sbjct: 368 YIVKVRQRIPSQVRPLNEIKAQVEQSFKAAKAVDLARGKAEQAARQLAAKKPLSSQSTSS 427

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIA 283
               + G    +  +    +    L  +    T P+        I +  + +        
Sbjct: 428 FGFSAKGDVPSIGNAPDLMEAAFRLTSASPAATAPFKVGDRWYAIRLKSRSEAPRAEFDR 487

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            K  +     P K ++    +VK+LR  A I  
Sbjct: 488 TKTAIKQGMLPVKQQEALTTWVKQLRGKAKIEI 520



 Score = 37.7 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 65/225 (28%), Gaps = 26/225 (11%)

Query: 18  TYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN-------- 69
             F+  +F +    S  S +  +     +N   I+  +       ++             
Sbjct: 23  LSFIGTMFLVWGKGSDGSGSSMAY-AAKVNRHKISLEEFQNAYQRMRNIYQQIYGQSLTP 81

Query: 70  -----GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF---VQHARNTGLSAEDFS 121
                  L+K A+  LI   L  +E +K GIT   + V+          ++   S + + 
Sbjct: 82  EIEKTLGLKKAALNSLIDTALILKEAKKMGITASKDEVSGAIAAMPMFQKDGVFSFDLYQ 141

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
             L    I    F++    + I     +        + +  +   +++           R
Sbjct: 142 QLLKSNRITAKEFEEAQQRELILKKTRQAIINKVAVSDQEALDLFRKEND---------R 192

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
             L  +        G ++    + +E   +        EK     
Sbjct: 193 IELEYLSYGPADVMGEIRPTEAELKEFLQKNQDRFRTAEKAEISY 237


>gi|261401210|ref|ZP_05987335.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria lactamica
           ATCC 23970]
 gi|269208789|gb|EEZ75244.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria lactamica
           ATCC 23970]
          Length = 512

 Score = 45.1 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/309 (9%), Positives = 82/309 (26%), Gaps = 22/309 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +F S+  +         LI    V      +    +     +  E I++  ++  +   +
Sbjct: 1   MFHSIEKYKTPAQVLLGLIALTFVGFGVSTASRPGADYIVQVGDEKISEQSLNAAVQNEQ 60

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                        Q L+     KQ  +  GI+  S  +    V          +   + L
Sbjct: 61  A-DGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDAGGKFDHALL 119

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           ++     +  +     +      ++N          + +   + +      +        
Sbjct: 120 NRYLSQRHMSEDQFVEEIRDQFALQNLV--NLVQNGVLVGDAQAEQLIRLTQVNRTIRSH 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
              PD  +      +  ++    +  +       ++     ++       Q + E+++  
Sbjct: 178 TFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQAVSETEVKN 237

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            ++  + +   N   P                        KA +  +    K      + 
Sbjct: 238 AYEERVARLPANEAKP-------------------SFEQEKAAVENELKMKKAVADFNKA 278

Query: 305 VKKLRSNAI 313
            +KL  +A 
Sbjct: 279 KEKLGDDAF 287


>gi|225375916|ref|ZP_03753137.1| hypothetical protein ROSEINA2194_01552 [Roseburia inulinivorans DSM
           16841]
 gi|225212237|gb|EEG94591.1| hypothetical protein ROSEINA2194_01552 [Roseburia inulinivorans DSM
           16841]
          Length = 333

 Score = 45.1 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/311 (9%), Positives = 88/311 (28%), Gaps = 25/311 (8%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           ++   K      ++ + C   +++              N EVI    ++ R  + ++  +
Sbjct: 1   MNSMKKNRKKMTLICLLCFSFLLTGCKIG---------NKEVIVSNTLNNR-QVFRIGNV 50

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITF------DSNTVNYFFVQHARNTGLSAEDFSS 122
           +  L++ A   L+             +                         +  +  + 
Sbjct: 51  SCGLKE-AKVYLVNYQNIYGTAYGLDLWQHDFGDSSLENYVKNITMQELAQVVCLDQLAK 109

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
             + +   +   K   A +  +  + +++     G  E +I    +         + +  
Sbjct: 110 EKEMELSEEEKEKTAQAAEEYFASLTEDE-TAYMGVSESDIKEYYEHYALAQKVYHSLTK 168

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ----YLL 238
            +     +       + +     E     +     + E FA+  ++ +  +       + 
Sbjct: 169 AVNEEVSDDEARVMEIMQIFVSDESRANEIASRLAQGEDFATLANNYN--ELGSIQVNIS 226

Query: 239 ESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
             DL    + +  +   +  +       G  +I   +K +     A KA +  +      
Sbjct: 227 RDDLPAAVEEIAFQMENDEVSGKITVDGGFYFIKCLNKYNQELTEANKANIVDKREKEAF 286

Query: 298 EKHEAEYVKKL 308
           +     +V  L
Sbjct: 287 DDEYNGFVSSL 297


>gi|328851900|gb|EGG01050.1| hypothetical protein MELLADRAFT_111323 [Melampsora larici-populina
           98AG31]
          Length = 188

 Score = 45.1 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 9/102 (8%), Positives = 24/102 (23%), Gaps = 1/102 (0%)

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
               + R    +    +   ++        + I           K  +  +  +      
Sbjct: 83  KHANSRRPSSWKETQITRTQSEAIEILKEHEEILRPLNGIQLNEKFQDLAKVHSDCSSYS 142

Query: 230 SIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
             G      +  +   F+ +  +      +    T  GV  I
Sbjct: 143 HGGDLGQFKKGQMQKSFEEVSFQLQIGELSKIVTTDSGVHLI 184


>gi|119475688|ref|ZP_01616041.1| hypothetical protein GP2143_17751 [marine gamma proteobacterium
           HTCC2143]
 gi|119451891|gb|EAW33124.1| hypothetical protein GP2143_17751 [marine gamma proteobacterium
           HTCC2143]
          Length = 300

 Score = 45.1 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/316 (7%), Positives = 72/316 (22%), Gaps = 46/316 (14%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           L  F      + +L          +     S R         ++  DI++       Q  
Sbjct: 6   LKFFRDPFIQFLILGSLVFTVFSVFTDGDSSDR------NITVSAMDIARLHGQWSTQYA 59

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
                   +  +I + ++++   +          +    +                    
Sbjct: 60  KQPTSAQ-LDSIIDQHIREEIFYREATKLRLGEEDIIIRRRMVQ---------------- 102

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                         +   +V+   + +    E+E      K +     +   R + +S  
Sbjct: 103 ----------KYMFLSESLVE---ITEPSGPELEDFYAANKQRYEIPEKLSFRHIYYSHN 149

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
                               +       +           +   +        +   F  
Sbjct: 150 SVSTAQDENNDAESAANNMVQSLNASQVDTSSWRKQGDAFMLQREYAAREPMQISELFGA 209

Query: 249 LLKKSQNNTT--------NPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIE 298
           +  +     +         P  +  G   + +  ++         +++ +       K  
Sbjct: 210 VFTQGLAGISDEDIAIWVGPIRSAYGWHAVKLLSRKPPATPLLADIRSKVVVDYIADKRR 269

Query: 299 KHEAEYVKKLRSNAII 314
           +  A+Y + +R+   I
Sbjct: 270 QTNADYYQSVRNQYQI 285


>gi|192291606|ref|YP_001992211.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris TIE-1]
 gi|192285355|gb|ACF01736.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris TIE-1]
          Length = 629

 Score = 45.1 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/390 (8%), Positives = 88/390 (22%), Gaps = 85/390 (21%)

Query: 5   VFTSLSDFI-KLLTTYFVLIIFCIVPIVSYKSW--AMSSRIRTTINGEVITDGDISKRIA 61
           +  + S++I K + T  + ++     +                 I    I+     +   
Sbjct: 1   MRKASSNWIGKTIMTIVMGVLIVSFGVWGIADVFRGFGRSTLAKIGSTEISTEQFRQTYN 60

Query: 62  -------------LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
                        L   Q     +++  +Q+ I E    ++  + G+           ++
Sbjct: 61  DRLQQIGRQFGRPLTPDQARAIGIDRQVLQQTIAEAALDEDARRLGLGQSDADTMKSILE 120

Query: 109 HARNTGLSAEDFSSFLDK---------QGIGDNHFKQYLAIQSIWP-------------- 145
                G + +  ++   +         Q       +  L  Q                  
Sbjct: 121 DPNFKGANGQFDANRFQQLIRQFGFTEQRYLAEQRRVALRRQIAGSLTAGLEPPKTLMQA 180

Query: 146 --------------DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                          +              ++ A     K         +     +    
Sbjct: 181 LSQFQNEERAIDYLKLTDAQAGTIAAPSPADLTAFYDSHKAQFRAPEYRKVSFLVVTPES 240

Query: 192 LQNQGFVQ------------------KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG- 232
           +     V                   ++ +  +     + +      K AS      +  
Sbjct: 241 IAKWAEVSDADAQKLFEQRKDKLSTPEKRQILQIVFPSVEEAQAARAKIASGTSFADLAK 300

Query: 233 ---------KAQYLLESDL--HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
                        + +S++              N  + P   Q G   + +       G+
Sbjct: 301 ERGVKPGDLDLGLVSQSEMLDQKVAAAAFALPLNEVSQPVQGQFGTVLLEVTKIEP--GK 358

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
               A ++A       ++   + V++L   
Sbjct: 359 QPDYASVAASLKRDLAQERARKQVQELHDK 388


>gi|67527584|ref|XP_661673.1| hypothetical protein AN4069.2 [Aspergillus nidulans FGSC A4]
 gi|74657276|sp|Q5B5W1|PIN4_EMENI RecName: Full=Peptidyl-prolyl cis-trans isomerase pin4;
           Short=PPIase pin4; AltName: Full=Parvulin-14;
           Short=Par14
 gi|40739767|gb|EAA58957.1| hypothetical protein AN4069.2 [Aspergillus nidulans FGSC A4]
 gi|259481343|tpe|CBF74769.1| TPA: Peptidyl-prolyl cis-trans isomerase pin4 (PPIase pin4)(EC
           5.2.1.8)(Parvulin pin4)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5B5W1] [Aspergillus
           nidulans FGSC A4]
          Length = 128

 Score = 45.1 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 27/85 (31%), Gaps = 6/85 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               + ++A E      K      +++        G   +  + +L   F+ +    + +
Sbjct: 45  EKFSKKEEALEKIRNGAKFDEVAREYSED-KARQGGSLGWKSKGELELPFEEVAFSLEQS 103

Query: 257 TTNP-----YVTQKGVEYIAICDKR 276
           TT         T  G   I +  ++
Sbjct: 104 TTGNPKIGEAKTGYGYHIIMVEGRK 128


>gi|213019460|ref|ZP_03335266.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|212994882|gb|EEB55524.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 578

 Score = 45.1 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/207 (11%), Positives = 60/207 (28%), Gaps = 21/207 (10%)

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
              D  + LD      ++F       + +  + +  F  +    + E+ +  +  +    
Sbjct: 177 PEPDDQALLDLYERNKSNFYYPEYRTAQYISLDQKYFEDQIRISDEEVDSIIEHQELKNQ 236

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
           R+                 +   +   +  EES+    +   +  K       V+     
Sbjct: 237 RDIFNVIF---------PTKEKAEIARRALEESKASFEQIIEEFNKVKLDETRVNN---- 283

Query: 236 YLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEI--ALKAYLSAQN 292
            + +  L    +  +        +    +  G   I +     +  E    LK  + +  
Sbjct: 284 -ITKDFLPENMREKVFALKTGEVSEVLTSNFGWHVIKVESIHQISDEDLVDLKKDIRSVL 342

Query: 293 TPTKIEKHEAEYVK----KLRSNAIIH 315
           T  K  +   +++     K+ + A I 
Sbjct: 343 TNQKSFEKVNDFINQVNYKIYNGATIE 369


>gi|196232956|ref|ZP_03131805.1| SurA domain protein [Chthoniobacter flavus Ellin428]
 gi|196222934|gb|EDY17455.1| SurA domain protein [Chthoniobacter flavus Ellin428]
          Length = 229

 Score = 45.1 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 55/169 (32%), Gaps = 13/169 (7%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKING----------ELEKIAVQELIVETLKKQEIEK 92
             T++G  I   ++ K  A L   +             +  ++ + E+I++ +     +K
Sbjct: 50  VATVDGAEIKKDELEKAFANLLAARKMSPDAIPAEQRLQGYRMVLDEIIIDKILA---KK 106

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
           S  T  ++       +  +    S  +    ++  G   +  K+ L  +      + +  
Sbjct: 107 SADTKVTDEEVNAQWERIKGNFGSEAELKKQVEAAGETLDKVKKGLHDRLAEEHWIDSQV 166

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
             K    + E     +K          +R     +  +K      V+++
Sbjct: 167 KDKVNVTDAEAEDFYKKHPEAFKTPEEVRASHILVKVDKDAKPEVVEEK 215


>gi|39997591|ref|NP_953542.1| hypothetical protein GSU2496 [Geobacter sulfurreducens PCA]
 gi|39984483|gb|AAR35869.1| hypothetical protein GSU2496 [Geobacter sulfurreducens PCA]
          Length = 571

 Score = 45.1 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/290 (10%), Positives = 72/290 (24%), Gaps = 31/290 (10%)

Query: 32  SYKSWAMSSRIRTTINGE-VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEI 90
            +  +    R   TI GE  +T  D+++ I +                           +
Sbjct: 306 GFLKFLEDKRPLATIKGEKPVTVADLAEAIRM----------------------KFYHGV 343

Query: 91  EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
           + +      N      +     T    ++       +               I+   V+ 
Sbjct: 344 DMAIDQKKVNKAKDSLLFEILATRAIEKEGRDKGFDKKKEYLDKVTDYQESVIFGHFVEK 403

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
                    E E+ A  +  K+      ++     +  D         + R     +   
Sbjct: 404 VIRPDVKVTEDELKAYYEAHKSEYSYPIMVVLDGIAFNDQNAAQSAAEKLRQGMDFKWFK 463

Query: 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGV-EY 269
              +     +       +        +    L      ++  +Q      Y    G    
Sbjct: 464 ENAEGHVDAKAAGVLQFEDVP-----VTLKTLPEGLNKVITGAQTGEYRVYSDPNGFTYV 518

Query: 270 IAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           I + +     +     ++A +       ++ K   E+  KLR  + +  +
Sbjct: 519 ILVRNVIPEQVQSFPEVEATIRKNVQSEQLNKLVVEWADKLRKASDVKIF 568


>gi|186681350|ref|YP_001864546.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nostoc punctiforme
           PCC 73102]
 gi|186463802|gb|ACC79603.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nostoc punctiforme
           PCC 73102]
          Length = 260

 Score = 45.1 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 74/273 (27%), Gaps = 36/273 (13%)

Query: 45  TINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
           TIN ++I+   I + +  L+     G+     +++ ++E   +           + T   
Sbjct: 8   TINDQIIS---IEEAVKYLQASGKLGQFIGDILRQHVIEEEIR--TRDDIEIGTAITEQA 62

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
                 +N     + F  +L         F   +        +       K    E +I 
Sbjct: 63  IIDFRLKNQLTDPQSFQEWLKTNNTDYATFHTSVTFGYKLEKL-------KAVVTEPKIQ 115

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
               + K    R  L R V+ +            ++   + +             ++++ 
Sbjct: 116 EYFIERKIFLDRIVLSRIVVNN------------RELADELQTQIEEGGSFEQLAKEYSL 163

Query: 225 KIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYV-----TQKG---VEYIAICDK 275
               +  G    +    +    +  +   S      P       + +G        +   
Sbjct: 164 SDDRIVNGMMGIVSRGSMPDILRAAIDVASPGQLIGPIEIVGKDSPQGEGPYGLFRVEQF 223

Query: 276 RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
                E      L         EK  AE ++KL
Sbjct: 224 LPASLEDT---QLKQALQNELFEKWLAEKIQKL 253


>gi|222086022|ref|YP_002544554.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Agrobacterium radiobacter K84]
 gi|221723470|gb|ACM26626.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Agrobacterium radiobacter K84]
          Length = 630

 Score = 44.7 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/166 (10%), Positives = 37/166 (22%), Gaps = 13/166 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVI--------T 52
           M   +      ++       ++  F I  I S      SS    T+  + I         
Sbjct: 1   MFDVLRKLAKTWVAKGIFVLLIAAFSIWGIESRMVTGGSSNAVVTVGDQKIDTNEFRLAY 60

Query: 53  DGDISKRIALLKLQKINGELE-----KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
              I      L++Q    +       +  V +L+      Q      +    + +     
Sbjct: 61  RRQIQAISQQLRMQITPEQARAFGIAQQTVAQLVAGASLDQLASDMNLGLSQDRLAQLIG 120

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
                  L+        +      N        +     V      
Sbjct: 121 DDPAFKALNGTFDRQKFESLLRNSNINPDDYIKERSKVAVRSQIVE 166


>gi|330994544|ref|ZP_08318468.1| Peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter sp.
           SXCC-1]
 gi|329758398|gb|EGG74918.1| Peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter sp.
           SXCC-1]
          Length = 665

 Score = 44.7 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/386 (7%), Positives = 86/386 (22%), Gaps = 86/386 (22%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSR--IRTTINGEVITDGDISKRIALLKLQ-- 66
            ++  +      + F    +        + R  +   +    I        +     Q  
Sbjct: 33  SWVGRIVAGLFFLAFIGFGVGDVLMNIGTERADVAARVGSRPILVQSYQNALQSEMPQVA 92

Query: 67  -------------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNT 113
                            ++ +  +Q L+++    +  ++ G+    + V           
Sbjct: 93  QSMHLSDPAQIPPATREQVARQVLQRLVLQAEIAEAADRHGLIVPDSVVRDEIFSIPAFR 152

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD------------------VVKNDF--- 152
           G + +   +  + +       +  L                          +V+  F   
Sbjct: 153 GTNGQFDRALFNDRLHRTGMTEGRLIELVRQEQASRVLLEPIRDGATVPDVMVRRLFDFE 212

Query: 153 ----------------MLKYGNLEMEIPANKQKMKNITVREYLIR------------TVL 184
                            +       ++                               +L
Sbjct: 213 AQTRTIDLVRVPFDSQQVTATPTPAQLARYHANHPWEFTAPEYRHARVVVLSADTIGRML 272

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG------------ 232
                   ++     +     E   +++     +    A +      G            
Sbjct: 273 DITDAELQKSYQDQAQTFSAPERRSVQIVTVPTQDRATALRARWTDAGAWAQVQKDAGRD 332

Query: 233 ----KAQYLLESDLHP-QFQNLLKKSQNNTT-NPYVTQKGVEYIAICDKRDL--GGEIAL 284
               +   + ++D+        +  +  + T  P  ++ G     +             +
Sbjct: 333 AAAVELPGMKQTDIPSADLGRAIFAAPVDVTQGPVKSEGGWVVFRVTTLTPAHTTPFADV 392

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRS 310
           K  L  Q   T+ +   A+ V+KL+ 
Sbjct: 393 KQALHDQIAHTRAQALLADRVQKLQD 418


>gi|895826|emb|CAA61475.1| nifM [Pantoea agglomerans]
          Length = 62

 Score = 44.7 bits (103), Expect = 0.016,   Method: Composition-based stats.
 Identities = 6/58 (10%), Positives = 20/58 (34%), Gaps = 2/58 (3%)

Query: 253 SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
                ++P  T+ G   +     R      +      +  Q    +   ++ +++++L
Sbjct: 2   EAGQLSSPVETELGWHLLLCEQIRLPQPLPKAEALTRVRQQLIARQQNHYQRQWLQQL 59


>gi|172065639|ref|YP_001816351.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MC40-6]
 gi|171997881|gb|ACB68798.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
           ambifaria MC40-6]
          Length = 279

 Score = 44.7 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/278 (11%), Positives = 68/278 (24%), Gaps = 48/278 (17%)

Query: 42  IRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
           +  T+NG  +   ++ + +                +Q L+   L +Q             
Sbjct: 34  VVATVNGVALHRVELDEAM-----TGRPESARGEVLQGLVARELLRQA------------ 76

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
                   A   GL          ++   D   + Y+A       V  ++   +Y  +  
Sbjct: 77  --------AERDGLGNAQPVRAAMQKAKVDTENRLYVARHLPMQPVTDDEVRQRYNEIVS 128

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG-FVQKRIKDAEESRLRLPKDCNKLE 220
           +I              Y  +    S  D         + ++ +       R      +  
Sbjct: 129 QI------------GPYQYKVSQMSFADEPTARFALALLEKGESFANVATRSHASDAQTS 176

Query: 221 KFASKIHDVSIGKAQYLLESDLH-PQFQNLLKKSQNNTT-NPYVTQKGVEYIAICDKRD- 277
             + +                L  P  Q L        T  P           + ++RD 
Sbjct: 177 WISFRQPVKDGQTLG------LPLPLAQALATMQPGQFTNAPLHVGDRFIVARLDERRDT 230

Query: 278 -LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            +       A +       +       ++ +L   A I
Sbjct: 231 VIPSYTQASAAMRKAMESKRNGDAFVTFIGQLARKAEI 268


>gi|163787467|ref|ZP_02181914.1| peptidyl-prolyl cis-trans isomerase [Flavobacteriales bacterium
           ALC-1]
 gi|159877355|gb|EDP71412.1| peptidyl-prolyl cis-trans isomerase [Flavobacteriales bacterium
           ALC-1]
          Length = 718

 Score = 44.7 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 62/233 (26%), Gaps = 6/233 (2%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
            +K+       I ++       +   +   S      S  +  T+NG+ I   D  +++ 
Sbjct: 4   LNKIRQRSLILILVIALALFSFVIGDLFKNSDALTGESQDVIATVNGKDINRLDFQQKVK 63

Query: 62  LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
             + +         A+  +  + L+K  ++        +          +        FS
Sbjct: 64  SYQERVGGRVSSTQAMNTIYNQELRKIVMKSEFEALGLSVEKDEMRDLLK------TSFS 117

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
           S+ + Q          L         ++             +  +       T+    ++
Sbjct: 118 SYPEFQDENGIFDVNRLNAFIANLKDLQGANPDSAPLGNFLVNYDSWTNNEQTIAANAVQ 177

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKA 234
              +++    +       +     +   + +          A  + +VS    
Sbjct: 178 QTYYNMIKAGVSTTISEAEDEYFGDAKTVDIRYVQVPYTSIADSLVEVSKNDI 230



 Score = 40.8 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 73/243 (30%), Gaps = 16/243 (6%)

Query: 50  VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
            ++  DIS  I   + +    E  +I   E   E  K  E           +    + + 
Sbjct: 224 EVSKNDISAYIKNNEEKYKVDERREIVYVEFKEEASKADEDRIKADLLKLKSDRPEWNES 283

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV--------VKNDFMLKYGNLE- 160
           ++NT       S+   +  I  N   +Y         +        +K D    YG    
Sbjct: 284 SKNTDTIPGFDSTTNVEDFINANSDIKYNDAFLRAAQLPATAKDTLMKLDVGSYYGPYRD 343

Query: 161 -MEIPANKQKMKNITVREYLIRTVLFSIP------DNKLQNQGFVQKRIKDAEESRLRLP 213
                 +K            +R +L           +  +     +              
Sbjct: 344 GEYFKLSKIITVKQLPDSVNVRHILVPFAGASNAGPDVTKTLAEAKITADSILAKIKSGT 403

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAIC 273
           K  + LE  + K+ + + G+ ++   + + P+F+     ++    +   T  G   I I 
Sbjct: 404 KFMDLLELSSDKVSNENDGELEFAYNAGMAPEFKAFSFDNKVGDIDVVGTSFGYHIIEIL 463

Query: 274 DKR 276
           +++
Sbjct: 464 EQK 466


>gi|190570945|ref|YP_001975303.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|190357217|emb|CAQ54634.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
          Length = 599

 Score = 44.7 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/207 (11%), Positives = 60/207 (28%), Gaps = 21/207 (10%)

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
              D  + LD      ++F       + +  + +  F  +    + E+ +  +  +    
Sbjct: 198 PEPDDQALLDLYERNKSNFYYPEYRTAQYISLDQKYFEDQIRISDEEVDSIIEHQELKNQ 257

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
           R+                 +   +   +  EES+    +   +  K       V+     
Sbjct: 258 RDIFNVIF---------PTKEKAEIARRALEESKASFEQIIEEFNKVKLDETRVNN---- 304

Query: 236 YLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEI--ALKAYLSAQN 292
            + +  L    +  +        +    +  G   I +     +  E    LK  + +  
Sbjct: 305 -ITKDFLPENMREKVFALKTGEVSEVLTSNFGWHVIKVESIHQISDEDLVDLKKDIRSVL 363

Query: 293 TPTKIEKHEAEYVK----KLRSNAIIH 315
           T  K  +   +++     K+ + A I 
Sbjct: 364 TNQKSFEKVNDFINQVNYKIYNGATIE 390


>gi|159044344|ref|YP_001533138.1| putative peptidyl-prolyl cis-trans isomerase [Dinoroseobacter
           shibae DFL 12]
 gi|157912104|gb|ABV93537.1| putative peptidyl-prolyl cis-trans isomerase [Dinoroseobacter
           shibae DFL 12]
          Length = 614

 Score = 44.7 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/162 (9%), Positives = 43/162 (26%), Gaps = 20/162 (12%)

Query: 8   SLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK 67
             S+F   +    +++      I S+           ++    IT  + ++ +       
Sbjct: 4   KTSNFFMFILLGLLIVALAGFGISSFGGSNAR---VGSVGDTDITVDEYARALQTQLRAA 60

Query: 68  INGE-------------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN-- 112
                            L++  + +L+       E  K G++     V            
Sbjct: 61  GQQRGRAVSMAEARELGLDRQVLAQLVNTAAIDNEAAKLGVSVGDMRVAEQIQTIPAFSG 120

Query: 113 --TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
              G   E +   L +  +    F+  +  ++    +     
Sbjct: 121 IGGGFDREAYEFTLQQNNLSPEEFEADVRNEAARNLLQAAVI 162


>gi|262340880|ref|YP_003283735.1| peptidylprolyl isomerase [Blattabacterium sp. (Blattella germanica)
           str. Bge]
 gi|262272217|gb|ACY40125.1| peptidylprolyl isomerase [Blattabacterium sp. (Blattella germanica)
           str. Bge]
          Length = 697

 Score = 44.7 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 31/283 (10%), Positives = 67/283 (23%), Gaps = 14/283 (4%)

Query: 49  EVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
             I + +I   I   K       L  ++   L        E                   
Sbjct: 214 HPIKNYEIYDYIKKNKFFYKTENLRNLSFVILRSHPSLDDEKNMDNKIRKLFQELKSSDH 273

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
           H+      +E                 Q    ++     +          +  ++   K 
Sbjct: 274 HSMIVSNQSERPFDSNFYLKKNLPPILQDFVEKNNRIGSMFGPVKENNIYIMAKLTGKKM 333

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
              ++     LI         N+   +       K     +    +    + K +     
Sbjct: 334 VHNSVLFSHILISHKEAVRSSNQRSKKKAENIAKKIYNTVQKNPYQFDALVMKKSDDFIK 393

Query: 229 VSIGKAQYLLESDLH--PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA 286
            + G   ++   + +   +      +++  T     T+ G   + I D++DL        
Sbjct: 394 NNKGNLGWMKYEEQNNLKKLDIFSSENKKGTIAFTETKFGYHILRIEDQKDLKPVYQFSI 453

Query: 287 YLSAQNTPTKIEKHE------------AEYVKKLRSNAIIHYY 317
            +       K E                  +  L +NA I  Y
Sbjct: 454 IIKTLVPSKKTEDLLHKNAVQFIKQNKNSNLNTLINNARIKKY 496


>gi|254417316|ref|ZP_05031059.1| hypothetical protein MC7420_8085 [Microcoleus chthonoplastes PCC
           7420]
 gi|196175854|gb|EDX70875.1| hypothetical protein MC7420_8085 [Microcoleus chthonoplastes PCC
           7420]
          Length = 245

 Score = 44.7 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/265 (9%), Positives = 63/265 (23%), Gaps = 31/265 (11%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              +    IT  ++   +A  +L      L +I + + I         E+     +    
Sbjct: 4   ILKVGDRTITAEEVIPLLAKYQLL--PQLLREIIIDQAI--ATLDCTDEEKNAACEQFYT 59

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                              S    + +     K     Q+ W   +++ F+ + G L+  
Sbjct: 60  KNQLTSEEERQAWRDRQDLSLEQVEELAVRGLKLEKFKQATWGHKIESYFLKRKGRLDRV 119

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           I +  +                                  +     +            +
Sbjct: 120 IYSLIRT--------------------------KEAAIAQELYFRIQEGEQSFNELARDY 153

Query: 223 ASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           +      + G    +  S       Q L          P         I +     +  +
Sbjct: 154 SQGPEAQTGGLVGPVELSTPHPTLAQMLTVSQPGQLLPPTRLGDWFIVIRLEKFLPVQLD 213

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVK 306
            A++  L  +   T +++   + + 
Sbjct: 214 DAMRQRLLDEMFTTWLKEQLRQQIS 238


>gi|297205678|ref|ZP_06923074.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus jensenii JV-V16]
 gi|297150256|gb|EFH30553.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus jensenii JV-V16]
          Length = 319

 Score = 44.7 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 37/318 (11%), Positives = 83/318 (26%), Gaps = 40/318 (12%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWA-MSSRIRTTINGEVITDGDISKRIALL 63
           +F  +  FI +   +        V  ++  + A  SS    +  G  IT  +  K +   
Sbjct: 8   MFIRMWRFISMNKYWKKAAAIVAVAGIALSATACSSSATLVSYKGGKITQDEYYKELK-- 65

Query: 64  KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
                + +  K  +  +I+    KQ+  K       +     + +   ++  SA + + +
Sbjct: 66  -----SSQAGKSTLANMIIYRALKQQYGKKVSQKQVDKEYNAYKKQYGSSFESALEQNGY 120

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                  +                + +    K                     +  ++ +
Sbjct: 121 TTSSFKKNIETNLLTVAALKDIKKITSKQEQKAWKS--------------YQPKVTVQHI 166

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESD- 241
           L              +   +D  +            +K++         GK      +D 
Sbjct: 167 L-----------VSKKSTAEDIIKQLKSGTSFATLAKKYSTDSATKDKGGKLAAFDSTDT 215

Query: 242 --LHPQFQNLLKKSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE 298
                      K      T  P  TQ G E I +      G     K  +  Q   +  +
Sbjct: 216 TLDSDFKTAAFKLKTGEYTTTPVKTQSGYEIIKMIKHPSKGKFSDHKKEIDEQIYQSMEQ 275

Query: 299 KHE--AEYVKKLRSNAII 314
                   ++ +   + I
Sbjct: 276 DTATMQSVIRTVLKKSDI 293


>gi|78043454|ref|YP_359635.1| hypothetical protein CHY_0781 [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995569|gb|ABB14468.1| hypothetical protein CHY_0781 [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 209

 Score = 44.7 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/187 (12%), Positives = 56/187 (29%), Gaps = 6/187 (3%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE-K 74
           +      ++  +   ++         +   INGE +T  +++K I   ++          
Sbjct: 17  IFFALAGLLLSVKFFLNVNQKTYQPNVLVIINGEALTTSEVNKVIKNYRIAGSQAANRLD 76

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             + +LI E L  QE ++  I      +     Q   +     +   +      + +  +
Sbjct: 77  QILSDLIDEKLILQEAKRRKIDATREEIEARLKQLKNHLPSLYQQIYT-----QMSEKEY 131

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
           K+ L  + I   +       +      E    +   K   +    ++ +        LQ 
Sbjct: 132 KEILKNRIIIQKLYTEVISSQKNKPTGEHEPLETSQKEKEIFAKWVKELREKADITFLQE 191

Query: 195 QGFVQKR 201
                K 
Sbjct: 192 NIQNFKE 198


>gi|307105334|gb|EFN53584.1| hypothetical protein CHLNCDRAFT_58544 [Chlorella variabilis]
          Length = 271

 Score = 44.7 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 9/82 (10%), Positives = 22/82 (26%), Gaps = 7/82 (8%)

Query: 222 FASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
            +      + G   ++ +     +F+               T+ GV  + +  +R     
Sbjct: 100 HSQCPSRSNGGSLGWIAKGQTVAEFEEAAFGCAPGALAMCETRFGVHLLTVTAERQA--- 156

Query: 282 IALKAYLSAQNTPTKIEKHEAE 303
               A +   +     E   A 
Sbjct: 157 ----AEVRHMSVQELAESLAAR 174


>gi|239617251|ref|YP_002940573.1| hypothetical protein Kole_0859 [Kosmotoga olearia TBF 19.5.1]
 gi|239506082|gb|ACR79569.1| hypothetical protein Kole_0859 [Kosmotoga olearia TBF 19.5.1]
          Length = 323

 Score = 44.7 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/330 (8%), Positives = 79/330 (23%), Gaps = 40/330 (12%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING-- 70
           +K      +L++F      + +     +    T+NGE IT  +    +    ++      
Sbjct: 1   MKKFLVISLLVLFSAGIFATSEINPDKTTPVATVNGEPITMYEFLAEVMPNYMEIAKKVE 60

Query: 71  ---------------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
                                E EK  + ++I   L  Q  ++  +  D   +       
Sbjct: 61  EVDPLFSEVLTSTEAGKTLLTEYEKRVLAKMIERKLFLQLAKQLDVAIDMQALKEKIHNI 120

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
                          D       +       +     V+      +  +   +   +   
Sbjct: 121 IIQNLKENNISIEIADLYYTLKGYTGGLEMYEV---RVLNETAYRQTYDAIYQALTSDAT 177

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
           +    + +Y        +      +                      + +  F  +  + 
Sbjct: 178 VTEEEIVQYYKANKKIVLKIKGFDSFAPA-------YTFLNNAKASDDPVSLFDVEDREY 230

Query: 230 SIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS 289
           +                    +  +        T+     + +  ++       L+  +S
Sbjct: 231 TFENLIKETGISTDTAVFLFDEFKKGLYPKVISTETKHYVVYLSGEK---SLEELRDEIS 287

Query: 290 AQNTPTKIEKHEAEYVKK----LRSNAIIH 315
            +    K +     ++++     R  AII 
Sbjct: 288 KKLLEEKKKNIWNTFIEQYFVPFREQAIIE 317


>gi|300311306|ref|YP_003775398.1| peptidyl/prolyl cis-trans isomerase [Herbaspirillum seropedicae
           SmR1]
 gi|300074091|gb|ADJ63490.1| peptidyl/prolyl cis-trans isomerase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 304

 Score = 44.7 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/283 (10%), Positives = 75/283 (26%), Gaps = 45/283 (15%)

Query: 36  WAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGI 95
            A S +   +++G+ IT   ++  +     ++ N    K  +  L+   +      K  +
Sbjct: 35  QAASGQALASVDGKEITIHQLNAELGKGGAREAN----KQVLDGLVARQVLVNAARKEKL 90

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
             D   +                                 +      +    V+      
Sbjct: 91  DADPAVLAD------------------------------MERARDLVLAQSYVQRKLAKP 120

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
               + E+     +  +                   + ++  V + +         L + 
Sbjct: 121 TRPSQQEVSTFYDQHPD------WFAQRQQYEFAELVIDRASVNEELTKMMVGVRPLEEV 174

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK 275
              L+K       + +         DL P     +KK +                A+ D 
Sbjct: 175 AAWLQKQHIPFTRLQV----TKTSMDLPPPMLAGVKKMEKGQLFIVNEGDAAILAALADV 230

Query: 276 RDLGGEIALK-AYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           R++    A     +       +  +   + V +L+++A I Y+
Sbjct: 231 RNVPLSRAAATQQIEQYLANQRQGEITEQAVARLKADAKIVYF 273


>gi|322699785|gb|EFY91544.1| hypothetical protein MAC_02429 [Metarhizium acridum CQMa 102]
          Length = 793

 Score = 44.7 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 26/287 (9%), Positives = 81/287 (28%), Gaps = 23/287 (8%)

Query: 48  GEVITDGDISKRIALLKLQKINGELEKIAVQEL-----------IVETLKKQEIEKSGIT 96
            E I    +     +   Q++  +  K A  +            + +   KQ   +    
Sbjct: 260 NEKIHQSAVEMAKKMYAGQQLGADQPKDAPGQGSGASQPNQYMNLQDAAYKQAQARIAKL 319

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---FM 153
            D    +  F ++  N   S       + ++                  + ++     F 
Sbjct: 320 HDEYHQSREFQEYYGNEKASNPKHRFSMSRKWGRRGSHSDEDLDDRQKSEKIREQMSMFS 379

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
            K   ++ E     ++      +  +   +         +        I D E    +  
Sbjct: 380 SKLSQVDKEKRHKDREALLAAAQRNVKAQLHGMDEKVYQETGRANPTLITDWEAKAQKAA 439

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKG-VEYIAI 272
           +  ++     S+      G   ++ +  ++      ++   ++  +   T++   E + +
Sbjct: 440 QAQHEARTDDSEGKIDLGGGM-FMTQEQVNAIASKKIQPVLDDINDKAETERERQEVLKM 498

Query: 273 CD-------KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
            +       +++   +  +K          K E+   +  +K+   A
Sbjct: 499 EEQARREQAEKEKARDREVKEIAKKDKEQEKQEEKAKKLQEKMEEKA 545


>gi|308272984|emb|CBX29588.1| DNA-directed RNA polymerase subunit beta' [uncultured
           Desulfobacterium sp.]
          Length = 1470

 Score = 44.7 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 10/121 (8%), Positives = 28/121 (23%), Gaps = 6/121 (4%)

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
              +               ++  K   E           + +++  ++    G    L +
Sbjct: 567 WEIIPKENIVRMSHIMVSSEEVAKSVHERIRNGEAFSQMVNQYSESLNKKLDGDIGLLRK 626

Query: 240 SDLHPQFQNL-----LKKSQNNTTNPYVTQKGVEYIAICDKR-DLGGEIALKAYLSAQNT 293
            +    F            +   +    +Q       I +KR ++  +   K        
Sbjct: 627 EEFTRIFDIDDADLVFSVEEGEISEIIPSQDKYHIFQINEKRAEIPFDAINKVQDKKSLR 686

Query: 294 P 294
            
Sbjct: 687 D 687


>gi|224010677|ref|XP_002294296.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970313|gb|EED88651.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 116

 Score = 44.7 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 6/73 (8%), Positives = 17/73 (23%), Gaps = 1/73 (1%)

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTT 258
           K  +   +             + +      + G   +     +   F++          +
Sbjct: 41  KVYEAKIKEEGVDGSFPRYAGERSDCGSFQNNGDLGFFGRGMMQKPFEDASFALQVGEMS 100

Query: 259 NPYVTQKGVEYIA 271
               T  G+  I 
Sbjct: 101 GIVSTDSGLHLIY 113


>gi|21672727|ref|NP_660794.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25008943|sp|Q8K987|PPID_BUCAP RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase
           D; AltName: Full=Rotamase D
 gi|21623371|gb|AAM68005.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 621

 Score = 44.7 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 35/396 (8%), Positives = 98/396 (24%), Gaps = 85/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + + L+  I       +++      I +Y +   ++R    +NGE I+   + K  
Sbjct: 1   MIKYLKSRLNIIIVKCILGIIILSLVFGTINNYFNR-DTTRYIAKVNGEEISFITLQKMY 59

Query: 61  ALLKLQKIN----------------GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
              + ++                   E     + +LI   L +Q  ++       N +  
Sbjct: 60  IDERKKQEKILGQDFEKIKKNKKFKEETYNYILSQLINNILLEQYTKRMNFNIQDNEIKK 119

Query: 105 FFVQ---HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN----------- 150
                     N   + + + ++L  + +    +   +  +     ++             
Sbjct: 120 IIFNIPIFQENNEFNKKKYLNYLSSKNLTHYEYVSLIRKKLNTTYLINAISETDFILDNE 179

Query: 151 ----------------------DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                                   +      E EI     + KN        +     + 
Sbjct: 180 QKKIIKLLSEKRIIKKAIIKINPIINNQKVTEKEINNYFDQHKNEFYTPEKFKISYIQLK 239

Query: 189 DNKLQNQGFVQKRIKDAEESRLR-----------------------------LPKDCNKL 219
            NK + Q   ++     +++  +                                     
Sbjct: 240 PNKFKIQCSNEEIKNWYKKNIDKYSNQERRQYSIIQTKTKNEALSILSELKKGEDFSKIA 299

Query: 220 EKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL 278
           ++ +         G   ++ ++ +  + +    +  +  +N          I +      
Sbjct: 300 KEKSIDPFSSEQGGNIGWITKNFVPNEIKIANLEKIDQISNIIKFNNNFLIIKLNKILPK 359

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             +      +S         +      KKL+    I
Sbjct: 360 KYKKIS--EVSDLIENEIKYQKSLNTYKKLKDKIAI 393


>gi|269302857|gb|ACZ32957.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]
          Length = 363

 Score = 44.7 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 34/302 (11%)

Query: 34  KSWAMSSRIRTTINGE-VITDGDISKRIALL-------------KLQKINGELEKIAVQE 79
              A+  RI   ++ E V+T  D+  ++ LL                +    +  + ++ 
Sbjct: 49  SGLAIHDRILFKVDEENVVTTLDVIHKLNLLFYNSYPHLIDSFPARSQYYTAMWPVVLES 108

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           +I E L   + +   I  D   VN    +           ++ F        N   + L 
Sbjct: 109 VIDEFLMVADAKAKRIATDPTAVNQEIEEMFGRDLSPL--YAHFEMSPNDIFNVIDRTLT 166

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
            Q +   +V++  MLK      +I    +K++    R+ + +  + +I  N       + 
Sbjct: 167 AQRVMGMMVRSKVMLKVTPG--KIREYYRKLEEEASRKVIWKYRVLTIKANTESLASQIA 224

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN 259
            +++          KD       +        G+     E        +   K + +   
Sbjct: 225 DKVRARLNEAKTWDKDRLTALVIS------QGGQLVCSEEFSRENSELSQSHKQELDLIG 278

Query: 260 --------PYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLR 309
                   P   + G +   + DK     E    +++ +       + E  E +Y  +LR
Sbjct: 279 YPKELCGLPKAHKSGYKLYMLLDKTSGSIEPLDVMESKIKQHLFALEAESVEKQYKDRLR 338

Query: 310 SN 311
             
Sbjct: 339 KR 340


>gi|225677192|ref|ZP_03788188.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
 gi|225590779|gb|EEH12010.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
          Length = 120

 Score = 44.7 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/115 (13%), Positives = 34/115 (29%), Gaps = 8/115 (6%)

Query: 8   SLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ- 66
           ++ +F   +T   +  +   + I +  S          +  EVIT  +        + Q 
Sbjct: 2   NVKNFFTKVTVVLLACLLIFMGIGNLLSGDDEKEEVARVGKEVITSDEYKSLYQNYEKQI 61

Query: 67  -------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
                  +   +L+   +  LI + L      + G+T    +             
Sbjct: 62  SGSDASREQVKKLKYDLLNALIEQKLLFNLTSELGLTVGEESTKNHIKNTKYFQN 116


>gi|225629761|ref|ZP_03787708.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
 gi|225591385|gb|EEH12478.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
          Length = 445

 Score = 44.3 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 17/226 (7%), Positives = 67/226 (29%), Gaps = 18/226 (7%)

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
            K  E                  + A       +D +     +    + +          
Sbjct: 11  EKIDEQIYKSRYQTRVVDIVKITEDAVTNIPEPDDQALLDLYERNKSHFYYPEYRTAQYI 70

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
             + +  F  +    + E+    ++ +    R+      +F+   +  +     ++  ++
Sbjct: 71  S-LGQKYFEDQIKISDEEVDGIIEQQELKNQRD------IFNAIFSTKEEAETARRAFEE 123

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVT 263
            + S  ++ ++  K +   +++++        + +  L    +  +        +    +
Sbjct: 124 GKTSFEQIVEEFGKAKLEETRVNN--------ITKDFLPEDVREKVFALKVGEVSEVLAS 175

Query: 264 QKGVEYIAICDKRDLGGEI--ALKAYLSAQNTPTKIEKHEAEYVKK 307
             G   + +     +  E    LK  + +  T  K  +   +++ +
Sbjct: 176 SFGWHIVKVESAHQISDEDLVDLKKDIKSVLTNQKSFERVNDFINQ 221


>gi|227517652|ref|ZP_03947701.1| peptidylprolyl isomerase [Enterococcus faecalis TX0104]
 gi|227074909|gb|EEI12872.1| peptidylprolyl isomerase [Enterococcus faecalis TX0104]
          Length = 362

 Score = 44.3 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/315 (8%), Positives = 77/315 (24%), Gaps = 41/315 (13%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K +    +L     + + S  + +  S+   T+ G  IT  D   +I             
Sbjct: 19  KRMKKKLILAAAGAMAVFSLAACSSGSKDIATMKGSTITVDDFYNQIK-------GQSTS 71

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           + A  ++++  + + +        D         +   +     E   +           
Sbjct: 72  QQAFSQMVIYKVFEDKYGNKVTDKD-------VQKKFDDAKEQMEAQGAKFTDALKQYGL 124

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
            ++    Q       +          + ++             + +              
Sbjct: 125 TEKDFKKQLKQTAAFQEGMKAHLKITDEDLKTAWASFHPEVEAQII-------------- 170

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQF--QNLL 250
            Q   +   K  ++            +  +         GK ++  +S   P    +   
Sbjct: 171 -QVASEDDAKAVKKEITDGGDFAKIAKDKSTDAATKKDGGKIKFDSQSTTVPAEVKEAAF 229

Query: 251 KKSQNNTTNPYVTQKG------VEYIAICDKRDLGGE-IALKAYLSAQNTPTKI--EKHE 301
           K      + P               + +   +  G +    +  +      TK+  +  +
Sbjct: 230 KLKDGEVSEPIAATNAQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKIAEETKLADQTFQ 289

Query: 302 AEYVKKLRSNAIIHY 316
           A+ +      A +  
Sbjct: 290 AKVISDELKAANVKI 304


>gi|169343343|ref|ZP_02629952.2| hypothetical protein CPC_A0044 [Clostridium perfringens C str.
           JGS1495]
 gi|169343349|ref|ZP_02864354.1| hypothetical protein CPC_A0045 [Clostridium perfringens C str.
           JGS1495]
 gi|169344564|ref|ZP_02865531.1| hypothetical protein CPC_A0048 [Clostridium perfringens C str.
           JGS1495]
 gi|169297303|gb|EDS79414.1| hypothetical protein CPC_A0048 [Clostridium perfringens C str.
           JGS1495]
 gi|169298518|gb|EDS80603.1| hypothetical protein CPC_A0045 [Clostridium perfringens C str.
           JGS1495]
 gi|169298526|gb|EDS80609.1| hypothetical protein CPC_A0044 [Clostridium perfringens C str.
           JGS1495]
          Length = 227

 Score = 44.3 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 48/128 (37%), Gaps = 11/128 (8%)

Query: 13  IKLLTTYFVLIIFCI-VPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
           +K +  +F+ +     +  ++  +   + ++   +NG  IT+ DI +          NG 
Sbjct: 1   MKKIIGFFLALTVIFQLSAINVFATESNDKVIAIVNGIEITEKDIDE----------NGI 50

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           +       L  ET  + E + +  +   +  +  +V+  +N  +  +  +   ++Q    
Sbjct: 51  INNSVFDTLKEETRNEDEEKITPRSKRYSVPSTLYVKKGQNALMVKKLGAPRFNQQTDTY 110

Query: 132 NHFKQYLA 139
               +   
Sbjct: 111 FLNPKDAK 118


>gi|294827676|ref|NP_710751.2| hypothetical protein LA_0570 [Leptospira interrogans serovar Lai
           str. 56601]
 gi|293385519|gb|AAN47769.2| hypothetical protein LA_0570 [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 279

 Score = 44.3 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/290 (8%), Positives = 68/290 (23%), Gaps = 47/290 (16%)

Query: 19  YFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQ 78
                +  ++ ++  +   + S     +NG  I   +  + +  L     N   E+    
Sbjct: 19  ALFGFLLALIGLLFPEREILLSDTVAEVNGNYIKKDEYFRTLTALSSDSKNSITEEA--- 75

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
                                            N      +    + +        +  L
Sbjct: 76  -------------------------------RANVLERLIEEELLVQRGLELGFAREDRL 104

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
              SI   V+++            +      + N        R  +     +   +   +
Sbjct: 105 IRASIVRAVIQSIISENVSEKPNVLELRSYFLLNRDKFLKTSRYQVMVYQQSDEVSATRI 164

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
            K +++A  +                K+ D                    L        +
Sbjct: 165 SKELREAGRTMAPNVYYIPNTLLPLRKLLDYLG-----------PDVVLALGNLKSGEVS 213

Query: 259 NPYVTQKGVEYIA--ICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
           +P  + +    +   + +        ++K  + A     K ++   EY+ 
Sbjct: 214 DPIKSGEKFFVVKVFVLEPGSTPDFDSVKKEVEASYIQEKGDRTLREYLD 263


>gi|241761010|ref|ZP_04759099.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|241374629|gb|EER64090.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
          Length = 642

 Score = 44.3 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/255 (5%), Positives = 58/255 (22%), Gaps = 7/255 (2%)

Query: 62  LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN-TGLSAEDF 120
           L +      +L     ++++   +    +                +        L+    
Sbjct: 147 LAQQHMTADQLRSDIAEDMVRRQILIPIVAGLKTPNAMAEPFARMLIQRHEGMILAIPTT 206

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
                 +   D     +         + +   +        E+   + ++ +        
Sbjct: 207 VMPPSDKAPDDKAIADFYKSHIERYTLPEQRVIRYALVKPDEVKPTEVQIADYFKSHASE 266

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY--LL 238
                +   +  Q     +   +                +       D+ +G        
Sbjct: 267 YA--ATEKRDLSQIILPDKAAAEALLAKIHGGLNFVAAAKTVGFSSEDIRLGALSKEQYS 324

Query: 239 ESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAI--CDKRDLGGEIALKAYLSAQNTPTK 296
           E                  +N   +  G   + +   +++       ++  ++ Q + + 
Sbjct: 325 EKASPEAANAAFSLGDGAVSNVLHSPLGWHIVHVDKIERKPAATLDQMRGEITRQLSESL 384

Query: 297 IEKHEAEYVKKLRSN 311
             K     + +++ N
Sbjct: 385 TSKAMTAKINRIQDN 399


>gi|116619875|ref|YP_822031.1| hypothetical protein Acid_0747 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223037|gb|ABJ81746.1| hypothetical protein Acid_0747 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 214

 Score = 44.3 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 63/203 (31%), Gaps = 11/203 (5%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI-----N 69
           +L       +  +          +  RI  ++   VIT  D+ + I +   Q       +
Sbjct: 1   MLIKALCTGLLAMAV-----RGEIIDRIAVSVGTRVITQSDLDRAIRVAAFQDGVKLDFS 55

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITF-DSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
              +K   Q LI + L + E+E S     D   ++    Q  +        + + L   G
Sbjct: 56  AARKKAVAQALIEQKLVQIELESSRYPLPDPAEISPAIEQFKKEHFKDDAAYRAALAAYG 115

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
           I +  F+  L  Q      V+  F       E E+ A  +K              +    
Sbjct: 116 ITEQDFRDMLLWQRTLLLFVQMRFETGAPVTESEVQAYFEKNVRPQAEAAHPGQPVLLED 175

Query: 189 DNKLQNQGFVQKRIKDAEESRLR 211
                 Q    +R     ++ L+
Sbjct: 176 FRGQIEQAISGQRADQQVDTWLK 198


>gi|113474123|ref|YP_720184.1| hypothetical protein Tery_0223 [Trichodesmium erythraeum IMS101]
 gi|110165171|gb|ABG49711.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101]
          Length = 253

 Score = 44.3 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 75/255 (29%), Gaps = 24/255 (9%)

Query: 50  VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
           +IT  DI   +  +KL     EL++  +     E +     E                  
Sbjct: 6   IITAEDI---LKHIKLSLKTSELKEEIITR---EIILNAAKEAGIKVETEELQKAADTMR 59

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
             N   SA+D  ++L+K  +  + F++ + I  +   +V + F  K             +
Sbjct: 60  FVNKLHSAQDTFAWLEKFCLSIDDFEEVVYISVVAQKLVAHLFADKV-------EPYFYE 112

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
            +       +   VL              +      + +   +                 
Sbjct: 113 NQLNYAGVVMYEVVLDDQDLGMELFYAIQEGETSFYDVAHEYIEDIEL----------RR 162

Query: 230 SIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
             G    L   DL P+    +          P VT KGV  I + +      +  L++ +
Sbjct: 163 QGGYRGVLYRKDLKPEISAAVFAAKPPQMIKPIVTSKGVHLIFVEEIISAELDNKLRSQI 222

Query: 289 SAQNTPTKIEKHEAE 303
            A+     ++K    
Sbjct: 223 FAELFDEWLKKQVES 237


>gi|254994931|ref|ZP_05277121.1| peptidyl-prolyl cis-trans isomerase D (ppiD) [Anaplasma marginale
           str. Mississippi]
          Length = 630

 Score = 44.3 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 25/382 (6%), Positives = 94/382 (24%), Gaps = 84/382 (21%)

Query: 10  SDFI-KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI-------- 60
           + F+  +L       +F     V       S R    +    ++  + S           
Sbjct: 5   NVFVGAVLAAVLCAFVFVTFGSVLPFGGTASDRCVAKVGSSCLSLREYSMAYRGELSYIE 64

Query: 61  ----ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
                 L    +   ++++ +  ++ + + ++  ++  +   + ++             S
Sbjct: 65  SLVHQKLSEDDMRFGVKEMTLSRMVDDMVLEKFAKELNLRVSNKSIRDLIGDMPMFQDKS 124

Query: 117 AEDFS--------------------------------SFLDKQGIGDNHFKQYLAIQSIW 144
            +                                       + G   + +    A   + 
Sbjct: 125 GKLDEQRFKDLLADAGMTEASYIGKVRGSLPAFVLSECIFPRSGEVYSQYYDGFAQDVLR 184

Query: 145 PDVVKNDFM------------LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK- 191
             +                      + ++E   N+       +           + ++  
Sbjct: 185 GIMQSRTVDIVEISQSAVENTSTPTDSDLEAMYNEGTKNGELIMPEYRSAEYMIVSEDDA 244

Query: 192 ------LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG--------KAQY- 236
                   ++   + +  +  + R  L        + ++    +  G             
Sbjct: 245 LDEVTASNDEVESEIKNSELHDQRDVLNLVFPSESEASAAYKAIKEGKAFEAVVKDLGTT 304

Query: 237 --------LLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEI--ALK 285
                   + +  L  + +N +   ++   +  + +  G   + I  K  +  +    LK
Sbjct: 305 VEEVTLRNVTKELLPIEVRNTVFDLNEGEVSGVFRSVVGWHVMKILSKHPISAKDLKKLK 364

Query: 286 AYLSAQNTPTKIEKHEAEYVKK 307
             ++      K  +  +  ++K
Sbjct: 365 EKVAMSIKRQKARELFSASIRK 386


>gi|184155805|ref|YP_001844145.1| peptidylprolyl isomerase [Lactobacillus fermentum IFO 3956]
 gi|183227149|dbj|BAG27665.1| peptidylprolyl isomerase [Lactobacillus fermentum IFO 3956]
          Length = 330

 Score = 44.3 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 27/282 (9%), Positives = 73/282 (25%), Gaps = 32/282 (11%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           +       ++    A  ++   T +G  IT+ +    +             K  +Q++I+
Sbjct: 7   LAIIAGLALALPLAACGNKAVATTSGGKITESEYYSSMK-------QTSNGKQVLQQMIL 59

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           + + +++      T + N+    + +   ++  +         K              Q 
Sbjct: 60  DKVLEKQYGSKVSTSEVNSEYNAYKKEYGSSFSTVLSEEGLTAK----------SFKQQI 109

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
               ++K             +    +K +       ++              +       
Sbjct: 110 RSNLLLKAAVRNYSTFSSSALKKQWKKYEPKVQTAEIL----------VGSKETAQSIID 159

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKA---QYLLESDLHPQFQNLLKK-SQNNTT 258
                S  +L +     +  ++     S G         ++ L   ++           T
Sbjct: 160 TLNNTSGSKLKEFKKLAKSKSTDTTTKSNGGVVSAFDNTDTSLPSAYRKAAFALKTGEYT 219

Query: 259 -NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
             P  T  G   I +      G   +  + L  Q     +  
Sbjct: 220 TEPVKTDNGYYVIYMIKHPAKGKYSSHISDLKDQIVTQNLNN 261


>gi|298506530|gb|ADI85253.1| conserved hypothetical protein [Geobacter sulfurreducens KN400]
          Length = 572

 Score = 44.3 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 35/294 (11%), Positives = 82/294 (27%), Gaps = 39/294 (13%)

Query: 32  SYKSWAMSSRIRTTINGE-VITDGDISKRIALLKLQKINGELEKI----AVQELIVETLK 86
            +  +    R   TI GE  +T  D+++ I +     ++  +++     A   L+ E L 
Sbjct: 307 GFLKFLEDKRPLATIKGEKPVTVADLAEAIRMKFYHGVDMAIDQKKVNKAKDSLLFEILA 366

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
            + IEK G     +    +  + A                                I+  
Sbjct: 367 TRAIEKEGRDKGFDKKKEYLDKVA--------------------------DYQESVIFGH 400

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
            V+          E ++ A  +  K+      ++     +  D         + R     
Sbjct: 401 FVEKVIRPDVKVTEDDLKAYYEAHKSEYSYPIMVVLDGIAFNDQNAAQSAAEKLRQGMDF 460

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKG 266
           +      +     +       +        +    L      ++  +Q      Y    G
Sbjct: 461 KWFKENAEGHVDAKAAGVIQFEDVP-----VTLKTLPEGLNKVITGAQTGEYRVYSDPNG 515

Query: 267 V-EYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
               I + +     +     ++A +       ++ K   E+  KLR  + +  +
Sbjct: 516 FTYVILVRNVIPEQVQPFPEVEAAIRKNVQSEQLNKLVVEWADKLRKASDVKIF 569


>gi|296417433|ref|XP_002838362.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634291|emb|CAZ82553.1| unnamed protein product [Tuber melanosporum]
          Length = 195

 Score = 44.3 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 7/65 (10%), Positives = 18/65 (27%), Gaps = 1/65 (1%)

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKG 266
            R R     +     +        G   +    ++  +F+         + ++   T  G
Sbjct: 128 IRDRSTSLADLAVVESDCSSARKRGDLGFFGRGEMQKEFEEAAFALRPGDMSHAVETASG 187

Query: 267 VEYIA 271
           +  I 
Sbjct: 188 IHLIE 192


>gi|260753024|ref|YP_003225917.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|258552387|gb|ACV75333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 642

 Score = 44.3 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/255 (5%), Positives = 58/255 (22%), Gaps = 7/255 (2%)

Query: 62  LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN-TGLSAEDF 120
           L +      +L     ++++   +    +                +        L+    
Sbjct: 147 LAQQHMTADQLRSDIAEDMVRRQILIPIVAGLKTPNAMAEPFARMLIQRHEGMILAIPTT 206

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
                 +   D     +         + +   +        E+   + ++ +        
Sbjct: 207 VMPPSDKAPDDKAIADFYKSHIERYTLPEQRVIRYALVKPDEVKPTEAQIADYFKSHASE 266

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY--LL 238
                +   +  Q     +   +                +       D+ +G        
Sbjct: 267 YA--ATEKRDLSQIILPDKAAAEALLAKIHGGLNFVAAAKTVGFSSEDIRLGALSKEQYS 324

Query: 239 ESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAI--CDKRDLGGEIALKAYLSAQNTPTK 296
           E                  +N   +  G   + +   +++       ++  ++ Q + + 
Sbjct: 325 EKASPEAANAAFSLGDGAVSNVLHSPLGWHIVHVDKIERKPAATLDQMRGEITRQLSESL 384

Query: 297 IEKHEAEYVKKLRSN 311
             K     + +++ N
Sbjct: 385 TSKAMTAKINRIQDN 399


>gi|62946413|ref|YP_227618.1| hypothetical protein all7316 [Nostoc sp. PCC 7120]
 gi|17134515|dbj|BAB77074.1| all7316 [Nostoc sp. PCC 7120]
          Length = 263

 Score = 44.3 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/147 (7%), Positives = 29/147 (19%), Gaps = 5/147 (3%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
               +   ++     +L R          L          +                 K+
Sbjct: 100 EKFKQINWRHQLESYFLKRKKYLDRVIYSLIQTENKSVVNELFFRIAEGEDSFAELARKY 159

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           +        G    +    + P F   L          P         + +        +
Sbjct: 160 SQGAEADRGGIIGPVELGSITPNFAQLLYTSQVGVVQPPVAFGNTWVIVRVEKLIPAQLD 219

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKKL 308
                ++  +      E    + + +L
Sbjct: 220 ----DFMRQRLLQENFEDWFQQQLNQL 242


>gi|116621076|ref|YP_823232.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116224238|gb|ABJ82947.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 850

 Score = 44.3 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 7/98 (7%), Positives = 21/98 (21%), Gaps = 1/98 (1%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNT 257
            +                    + +     +  G    +  S L  + +      +    
Sbjct: 36  AEESARVRAQLANGADFAVLAREKSVDATSLDGGLLGNVDPSTLREEIRTALQGLAPGQI 95

Query: 258 TNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT 295
           +  +    G   + +    +L G    +    A     
Sbjct: 96  SPVFRLPTGFAIVKVLAPDELAGIAEFQRSRQAAIRAE 133


>gi|332705576|ref|ZP_08425652.1| hypothetical protein LYNGBM3L_11830 [Lyngbya majuscula 3L]
 gi|332355368|gb|EGJ34832.1| hypothetical protein LYNGBM3L_11830 [Lyngbya majuscula 3L]
          Length = 260

 Score = 44.3 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 67/240 (27%), Gaps = 18/240 (7%)

Query: 64  KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
           +  K   +L+ ++ + L  + + +  +E++                 +N    A D  ++
Sbjct: 16  EFLKREIQLKDVSEKILYQKVINRAAVERNLTVTAEEIQEEADKFRHQNRLEKASDTLAW 75

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
           L    I  + ++  +  Q +   + K+ F       + ++     + +    +  L + +
Sbjct: 76  LADNMITSDDWEAGIRQQLLAKKLSKSLF-------DKDVEKFFGQNRLDFDQILLYQII 128

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL- 242
           + +   +K       +K           +            +      G    L   +L 
Sbjct: 129 VANEKLSKELFYQIEEK----------EISFYQAAHIYDIDEQRRQKCGFEGKLYRWNLR 178

Query: 243 HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEA 302
                 +         NP  T +G   + +               +  +     + +   
Sbjct: 179 PDIAAIVFGVPIGQVVNPVKTPQGYHILMVERFIPAELTPERYDEILDRLFQDWLNRELN 238


>gi|15618966|ref|NP_225252.1| hypothetical protein CPn1058 [Chlamydophila pneumoniae CWL029]
 gi|15836589|ref|NP_301113.1| hypothetical protein CPj1058 [Chlamydophila pneumoniae J138]
 gi|16753058|ref|NP_445331.1| hypothetical protein CP0792 [Chlamydophila pneumoniae AR39]
 gi|33242430|ref|NP_877371.1| hypothetical protein CpB1100 [Chlamydophila pneumoniae TW-183]
 gi|14195533|sp|Q9Z6K1|Y1058_CHLPN RecName: Full=Protein CPn_1058/CP_0792/CPj1058/CpB1100; Flags:
           Precursor
 gi|4377393|gb|AAD19195.1| CT355 hypothetical protein [Chlamydophila pneumoniae CWL029]
 gi|7189707|gb|AAF38591.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
 gi|8979431|dbj|BAA99265.1| CT355 hypothetical protein [Chlamydophila pneumoniae J138]
 gi|33236941|gb|AAP99028.1| hypothetical protein CpB1100 [Chlamydophila pneumoniae TW-183]
          Length = 363

 Score = 44.3 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 34/302 (11%)

Query: 34  KSWAMSSRIRTTINGE-VITDGDISKRIALL-------------KLQKINGELEKIAVQE 79
              A+  RI   ++ E V+T  D+  ++ LL                +    +  + ++ 
Sbjct: 49  SGLAIHDRILFKVDEENVVTALDVIHKLNLLFYNSYPHLIDSFPARSQYYTAMWPVVLES 108

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           +I E L   + +   I  D   VN    +           ++ F        N   + L 
Sbjct: 109 VIDEFLMVADAKAKRIATDPTAVNQEIEEMFGRDLSPL--YAHFEMSPNDIFNVIDRTLT 166

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
            Q +   +V++  MLK      +I    +K++    R+ + +  + +I  N       + 
Sbjct: 167 AQRVMGMMVRSKVMLKVTPG--KIREYYRKLEEEASRKVIWKYRVLTIKANTESLASQIA 224

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTN 259
            +++          KD       +        G+     E        +   K + +   
Sbjct: 225 DKVRARLNEAKTWDKDRLTALVIS------QGGQLVCSEEFSRENSELSQSHKQELDLIG 278

Query: 260 --------PYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLR 309
                   P   + G +   + DK     E    +++ +       + E  E +Y  +LR
Sbjct: 279 YPKELCGLPKAHKSGYKLYMLLDKTSGSIEPLDVMESKIKQHLFALEAESVEKQYKDRLR 338

Query: 310 SN 311
             
Sbjct: 339 KR 340


>gi|225848384|ref|YP_002728547.1| hypothetical protein SULAZ_0557 [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644127|gb|ACN99177.1| hypothetical protein SULAZ_0557 [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 456

 Score = 44.3 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 40/338 (11%), Positives = 99/338 (29%), Gaps = 35/338 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M +K+  S    I L  T F  +   IV ++ YK           +NG  I   + +   
Sbjct: 1   MFTKIAGSKWKNIVLYITAFAFVATSIVAVIIYKLSGEIYG-AAEVNGREIPMYEFNYTY 59

Query: 61  ALLKLQKINGELE---------KIAVQELIVETLKKQEIEKSGITFDSNTVNYFF--VQH 109
            ++     N +++         K A++ LI   L  QE EK GI      V      +  
Sbjct: 60  EMIGRNLQNQDIDITPFKKEIAKQAIETLIENELLYQEAEKEGIVATKEQVKEELLNIPA 119

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
            +  G   ++    +           + +  + I  + +++  +      + E+    +K
Sbjct: 120 FQVNGKFDKNTYIQIINSLGLTPEGFESILQKQITVNNLRSILLSTLYVSDEEVETFTKK 179

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
                  E  +         +++    + + +     +   ++      + K   +  ++
Sbjct: 180 QLTRISGEVTLIKPKEPTITDQMIKDYYEKHKSDYTVKEGKKVEIYKIDINKLGQEKAEI 239

Query: 230 SIGKAQYLLE----SDLHPQFQNLLKKSQNNTTNPY------------------VTQKGV 267
                    +    +++  + + +          P                    T  G 
Sbjct: 240 IAKDLFTKAKTGNITNIPQEVEKIFDGEVYEDKKPENVPQDVLSLSKDKKVSFSKTNDGY 299

Query: 268 EY-IAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
              I   D         +K  ++ +    + +K   + 
Sbjct: 300 YIGIYKGDVSQSKPFEEIKTEITEKLKRQEYQKVVDQL 337



 Score = 36.2 bits (81), Expect = 7.0,   Method: Composition-based stats.
 Identities = 23/274 (8%), Positives = 58/274 (21%), Gaps = 15/274 (5%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           ++D ++         +           +  I + + K   EK    +         +   
Sbjct: 168 VSDEEVETFTKKQLTRISGEVTLIKPKEPTITDQMIKDYYEKHKSDYTVKEGKKVEIYKI 227

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK---------YGNLEM 161
               L  E                      Q +        +  K             + 
Sbjct: 228 DINKLGQEKAEIIAKDLFTKAKTGNITNIPQEVEKIFDGEVYEDKKPENVPQDVLSLSKD 287

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           +  +  +      +  Y          +          KR +  +               
Sbjct: 288 KKVSFSKTNDGYYIGIYKGDVSQSKPFEEIKTEITEKLKRQEYQKVVDQLHKTTDITALL 347

Query: 222 FASKIHDVSIGKAQ----YLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
             + +    I         +          ++ +     T+ P  T++GV    +    +
Sbjct: 348 SNNPVEKNQISDMTIQEFVVKYGVKADSLSSITRLKVGETSKPINTEEGVLIFKLSQLTE 407

Query: 278 LGGE--IALKAYLSAQNTPTKIEKHEAEYVKKLR 309
              +    +K  +       K       YV  L+
Sbjct: 408 PDKDKMEEMKKTIVPMIKAQKFNDIYKMYVDNLK 441


>gi|189188062|ref|XP_001930370.1| peptidyl-prolyl cis-trans isomerase pin4 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|330922090|ref|XP_003299691.1| hypothetical protein PTT_10742 [Pyrenophora teres f. teres 0-1]
 gi|187971976|gb|EDU39475.1| peptidyl-prolyl cis-trans isomerase pin4 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|311326516|gb|EFQ92203.1| hypothetical protein PTT_10742 [Pyrenophora teres f. teres 0-1]
          Length = 125

 Score = 44.3 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 10/85 (11%), Positives = 28/85 (32%), Gaps = 6/85 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               + ++A E      K      + +        G   + +   L  +F+ +  + + +
Sbjct: 42  EKHSKKEEALEKLRNGAKFDEVAREMSED-KARQGGSLGWKVRGSLMQEFEKVAYELEPS 100

Query: 257 TTNP-----YVTQKGVEYIAICDKR 276
           TT         T +G   + +  ++
Sbjct: 101 TTGSPKIGEVKTSEGYHIVMVEGRK 125


>gi|302036376|ref|YP_003796698.1| putative peptidyl-prolyl cis-trans isomerase D (fragment)
           [Candidatus Nitrospira defluvii]
 gi|300604440|emb|CBK40772.1| putative Peptidyl-prolyl cis-trans isomerase D (fragment)
           [Candidatus Nitrospira defluvii]
          Length = 232

 Score = 44.3 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 18/160 (11%), Positives = 52/160 (32%), Gaps = 12/160 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSS-RIRTTINGEVITDGDISKR 59
           M   +  +  D+   L +   L+    V  + +  +  SS  +  ++  +V+   +  + 
Sbjct: 1   MIKLLREAAHDYPWFLKSIMGLLALAFVITMGWWGFGQSSGNVVASVGDQVVPLDEYRRA 60

Query: 60  IALL--------KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ--- 108
                       +    +  L++  +++LI   +     ++ G+T     +    +Q   
Sbjct: 61  YENTYRFYKDKGQNDIKDEFLKQFVLEQLIDNRMWLHVAKEMGLTVSDEDLRKAIMQRTE 120

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
             +N     + +   L    +    F+   A   +     
Sbjct: 121 FQKNGSFDPDAYKRLLSANRLTPASFEAMEAKDILTNKAR 160


>gi|227554800|ref|ZP_03984847.1| peptidylprolyl isomerase [Enterococcus faecalis HH22]
 gi|227176099|gb|EEI57071.1| peptidylprolyl isomerase [Enterococcus faecalis HH22]
 gi|315166858|gb|EFU10875.1| putative foldase protein PrsA [Enterococcus faecalis TX1341]
 gi|315575314|gb|EFU87505.1| putative foldase protein PrsA [Enterococcus faecalis TX0309B]
 gi|315581481|gb|EFU93672.1| putative foldase protein PrsA [Enterococcus faecalis TX0309A]
          Length = 362

 Score = 44.3 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 29/314 (9%), Positives = 75/314 (23%), Gaps = 39/314 (12%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K +    +L     + + S  + +  S+   T+ G  IT  D   +I             
Sbjct: 19  KRMKKKLILAAAGAMAVFSLAACSSGSKDIATMKGSTITVDDFYNQIK-------EQSTS 71

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           + A  ++++  + +++        D         ++        E               
Sbjct: 72  QQAFSQMVIYKVFEEKYGDKVTDKD-------IQKNFDEAKEQVEAQGGKFSDALKQAGL 124

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
            ++    Q                  + ++              +        I      
Sbjct: 125 TEKTFKKQLKQRAAYDAGLKAHLKITDEDLKTAW--------ASFHPEVEAQIIQVASED 176

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLK 251
           +   V+K      E            EK          GK ++  ++   P    +   K
Sbjct: 177 DAKAVKK------EITDGGDFTKIAKEKSTDTATKKDGGKIKFDSQATTVPAEVKEAAFK 230

Query: 252 KSQNNTTNPYVTQK------GVEYIAICDKRDLGGE-IALKAYLSAQNTPTKI--EKHEA 302
                 + P               + +   +  G +    +  +      TK+  +   +
Sbjct: 231 LKDGEVSEPIAATNMQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKIAEETKLADQTFVS 290

Query: 303 EYVKKLRSNAIIHY 316
           + +      A +  
Sbjct: 291 KVISDELKAANVKI 304


>gi|126641683|ref|YP_001084667.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
           baumannii ATCC 17978]
 gi|126387567|gb|ABO12065.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
           baumannii ATCC 17978]
          Length = 286

 Score = 44.3 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/195 (10%), Positives = 45/195 (23%), Gaps = 6/195 (3%)

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
            L+ +    Q           +  +     +      S ++ + + +K            
Sbjct: 79  SLVSKVDLMQIANLQTEQRTLHLASIKLDPYKTGLTASNQEATDYYNKHQNEFKQPASVD 138

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
               +    +             +  A   + +    +    R V   +     ++    
Sbjct: 139 VDYVVLSPSLMAKPAPATDAELKQAYAKFVETQQKDAK----RIVKHILITTDARDDAAA 194

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF-QNLLKKSQNN 256
           QK  KD                +F+         G  +          F + +L      
Sbjct: 195 QKLAKDVYAKIQGGLSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSLKNGQ 254

Query: 257 TTNPYVTQKGVEYIA 271
            + P  TQ G   I 
Sbjct: 255 ISQPVKTQYGYHIIE 269


>gi|283856265|ref|YP_162202.2| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|283775260|gb|AAV89091.2| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
           subsp. mobilis ZM4]
          Length = 642

 Score = 44.3 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 14/255 (5%), Positives = 58/255 (22%), Gaps = 7/255 (2%)

Query: 62  LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN-TGLSAEDF 120
           L +      +L     ++++   +    +                +        L+    
Sbjct: 147 LAQQHMTADQLRSDIAEDMVRRQILIPIVAGLKTPNAMAEPFARMLIQRHEGMILAIPTT 206

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
                 +   D     +         + +   +        E+   + ++ +        
Sbjct: 207 VMPPSDKAPDDKAIADFYKSHIERYTLPEQRVIRYALVKPDEVKPTEAQIADYFKSHASE 266

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY--LL 238
                +   +  Q     +   +                +       D+ +G        
Sbjct: 267 YA--ATEKRDLSQIILPDKAAAEALLAKIHGGLNFVAAAKTVGFSSEDIRLGTLSKEQYS 324

Query: 239 ESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAI--CDKRDLGGEIALKAYLSAQNTPTK 296
           E                  +N   +  G   + +   +++       ++  ++ Q + + 
Sbjct: 325 EKASPEAANAAFSLGDGAVSNVLHSPLGWHIVHVDKIERKPAATLDQMRGEITRQLSESL 384

Query: 297 IEKHEAEYVKKLRSN 311
             K     + +++ N
Sbjct: 385 TSKAMTAKINRIQDN 399


>gi|256959822|ref|ZP_05563993.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis Merz96]
 gi|256950318|gb|EEU66950.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis Merz96]
          Length = 342

 Score = 44.3 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 25/313 (7%), Positives = 78/313 (24%), Gaps = 41/313 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +L     + + S  + +  S+   T+ G  IT  D   +I             + 
Sbjct: 1   MKKKLILAAAGAMAVFSLAACSSGSKDIATMKGSTITVDDFYNQIK-------EQSTSQQ 53

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           A  ++++  + +++             +    +   +     E                +
Sbjct: 54  AFSQMVIYKVFEEKYGD-------KVTDKAIQKKFDDAKKQVEAQGGKFSDALTQAGLTE 106

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    Q    + ++          + ++             + +               Q
Sbjct: 107 KSFKKQLKQAEAMQVGLKDHLKITDEDLKTAWASFHPEVEAQII---------------Q 151

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQF--QNLLKK 252
              +   K  ++            +  +         GK ++  +S   P    +   K 
Sbjct: 152 VASEDDAKAVKKEITDGGDFAKIAKDKSTDAATKKDGGKIKFDSQSTTVPAEVKEAAFKL 211

Query: 253 SQNNTTNPYVTQKG------VEYIAICDKRDLGGE-IALKAYLSAQNTPTKI--EKHEAE 303
                + P               + +   +  G +    +  +      TK+  +  +A+
Sbjct: 212 KDGEVSEPIAATNAQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKIAEETKLADQTFQAK 271

Query: 304 YVKKLRSNAIIHY 316
            +      A +  
Sbjct: 272 VISDELKAANVKI 284


>gi|75910227|ref|YP_324523.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anabaena variabilis
           ATCC 29413]
 gi|75703952|gb|ABA23628.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anabaena variabilis
           ATCC 29413]
          Length = 260

 Score = 44.3 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 14/230 (6%), Positives = 46/230 (20%), Gaps = 1/230 (0%)

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
                 I  +     +    +              A       E   +            
Sbjct: 24  QIGNRTIQASELIPLLANYQLLPQLLRELIIDEAIAAVECKPEELAQAKQRFYADKQLAQ 83

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
           +  +    +   +                   +          +             L  
Sbjct: 84  ETDIQAWLVQQGLSAEQLDNIIVRKIKLEKYKQATWGAKLESYFFQLKAKLDKVIYSLLR 143

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL-HPQFQNLLKKS 253
                   +     + +        +K++      + G    + +S L     Q L    
Sbjct: 144 TQDPGLAQELYFRLQAKEQSFAEVAQKYSQGPESQTGGLVGPVEQSSLHPAMVQLLSNCQ 203

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAE 303
               ++P    +    + +        +  +KA L  +     +++ + +
Sbjct: 204 PGQISSPSRIAEWYVIVRVEKFIPAQLDEPMKARLLNELFEGWMQEKQRQ 253


>gi|220925415|ref|YP_002500717.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           nodulans ORS 2060]
 gi|219950022|gb|ACL60414.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
           nodulans ORS 2060]
          Length = 632

 Score = 43.9 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 7/88 (7%), Positives = 22/88 (25%), Gaps = 7/88 (7%)

Query: 233 KAQYLLESDL--HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYL 288
                  S+L             Q   + P   + G   + +       +     +   +
Sbjct: 315 DLGTFSRSELFDPAVADAAFGLQQGVVSEPVKGRFGTVLLRVTAIEPGSVKPYEEVAGQI 374

Query: 289 SAQNTPTKIEKHEA---EYVKKLRSNAI 313
             +    +   +     + ++  R+ A 
Sbjct: 375 RTEIARERAGDNLEKVHDAIEDQRAGAK 402


>gi|126656393|ref|ZP_01727654.1| hypothetical protein CY0110_21857 [Cyanothece sp. CCY0110]
 gi|126622079|gb|EAZ92786.1| hypothetical protein CY0110_21857 [Cyanothece sp. CCY0110]
          Length = 247

 Score = 43.9 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 17/222 (7%), Positives = 56/222 (25%), Gaps = 2/222 (0%)

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           AV+E+I E     ++ +      +  +     + A     + E   +    +   +    
Sbjct: 8   AVEEIIKEIKLSGKMREITEGLMNRRIITQEAERANIKVETEELQQAADQFRLRHNLESA 67

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
                      +   DF        +     K    +     +    + ++         
Sbjct: 68  DQTHQWLTRSQLSIEDFEEILHFSIISGKLAKNLFDDKVEPYFYQNQLNYTEVIMYEIIL 127

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYLLESDLHPQF-QNLLKKS 253
                 ++             +   ++   I      G    +   +L P+    +   +
Sbjct: 128 DDEDLAMELYYAIDENEISFWDVAHQYIQDIELRRKGGYLGSVKRQELKPEISAAIFAAN 187

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT 295
                 P +T +G+  + + +      +   +  + +     
Sbjct: 188 PPQLLKPIMTSQGIHLVFVEEIIQPELDEKKRHKILSDLFSE 229


>gi|325202068|gb|ADY97522.1| conserved hypothetical protein [Neisseria meningitidis M01-240149]
          Length = 512

 Score = 43.9 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 33/309 (10%), Positives = 82/309 (26%), Gaps = 22/309 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +F S+  +         LI    V           +     +  E I+D  I+  I   +
Sbjct: 1   MFHSIEKYRTPAQVLLGLIALTFVGFGVSTVSHPGADYIVQVGDEKISDHSINNAIQNEQ 60

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                G       Q L+     KQ  +  GI+  S  +    V        + +   + L
Sbjct: 61  A-DGGGPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFDHALL 119

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           ++     +  +     +      ++N          + +   + +      +        
Sbjct: 120 NRYLSQRHMSEDQFVEEIRDQFALQNLV--NLVQNGVLVGDAQAEQLIRLTQVNRTIRSH 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
              PD  +      +  ++    +  +       ++     ++       Q + E+++  
Sbjct: 178 TFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEVKN 237

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            F+  + +   N                            KA +  +    K      + 
Sbjct: 238 AFEERVARLPANEAKL-------------------SFEQEKAAVENELKMKKAVADFNKA 278

Query: 305 VKKLRSNAI 313
            +KL  +A 
Sbjct: 279 KEKLSDDAF 287


>gi|17228858|ref|NP_485406.1| hypothetical protein all1363 [Nostoc sp. PCC 7120]
 gi|17130710|dbj|BAB73320.1| all1363 [Nostoc sp. PCC 7120]
          Length = 242

 Score = 43.9 bits (101), Expect = 0.028,   Method: Composition-based stats.
 Identities = 14/189 (7%), Positives = 49/189 (25%), Gaps = 2/189 (1%)

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ-KMKNITV 175
            E+ +    +        ++      +    +  + +      ++++   KQ        
Sbjct: 47  PEELAQAKQRFYADKQLSQETDIQAWLVQQGLSAEQLDNIIVRKIKLEKYKQATWGAKLE 106

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
             +             L          +     + +        +K++      + G   
Sbjct: 107 SYFFQLKAKLDKVIYSLLRTQDPGLAQELYFRLQAKEQSFAEVAQKYSQGPESQTGGLVG 166

Query: 236 YLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP 294
            + +S L     Q L        + P    +    + +        +  +KA L  +   
Sbjct: 167 PVEQSSLHPAMVQLLSSCQPGQISPPTRITEWYVIVRVEKFIPAQLDEPMKARLLNELFE 226

Query: 295 TKIEKHEAE 303
             +++ + +
Sbjct: 227 GWMQEQQRQ 235


>gi|313124214|ref|YP_004034473.1| parvulin-like peptidyl-prolyl isomerase [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312280777|gb|ADQ61496.1| Parvulin-like peptidyl-prolyl isomerase [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 311

 Score = 43.9 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 29/307 (9%), Positives = 72/307 (23%), Gaps = 33/307 (10%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTIN--GEVITDGDISKRIALLKLQKINGEL 72
           +      + +      +   + A SS   T +N  G  IT  +  + +            
Sbjct: 1   MKKHLKKIAVLAGAAAIGLSTAACSSSSATVVNYKGGKITQDEYYEAMKDTSA------- 53

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            +  +  LI+    K +      +   N     + +   +   +   +S           
Sbjct: 54  GQSTLVSLIIYRTLKAQYGDKVSSKKINAEYNKYKKQYSSNFSTVLSYSGLT-------- 105

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
              +                         +     +     T            +     
Sbjct: 106 --TKSFKQNLATNLYSVAALKDLKKPTTTQEKNWWKSYHTKTT------VQHIVVDKKST 157

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
                 + +   +  +  +        +K A K+             +        + K 
Sbjct: 158 AETVIKKLKSGTSFATLAKKYSTDTATKKKAGKMAAFDSTD-----TNLSSTFKSAVWKL 212

Query: 253 SQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT--KIEKHEAEYVKKLR 309
            +   T  P  T  G E I +    + G     K+++  Q             + + K+ 
Sbjct: 213 KEGEYTTTPVKTSSGYEVIKVLKTTEKGSYTKNKSFIDKQLYAKWAADSNTMTKIISKVL 272

Query: 310 SNAIIHY 316
             A ++ 
Sbjct: 273 KKANVNI 279


>gi|239630128|ref|ZP_04673159.1| ase protein prsA [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|301067278|ref|YP_003789301.1| Parvulin-like peptidyl-prolyl isomerase [Lactobacillus casei str.
           Zhang]
 gi|239527740|gb|EEQ66741.1| ase protein prsA [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|300439685|gb|ADK19451.1| Parvulin-like peptidyl-prolyl isomerase [Lactobacillus casei str.
           Zhang]
          Length = 299

 Score = 43.9 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 86/286 (30%), Gaps = 36/286 (12%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K+     +        ++S      + +   T +G  +T+    K +             
Sbjct: 4   KMRLKVLLASTATAFLLLSGCQSNQADQTVATYSGGKVTESSFYKELK-------QSPTT 56

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           K  +  +++         K   +  + TVN  +  + +  G   E+F +FL + G   + 
Sbjct: 57  KTMLANMLIYRALNHAYGK---SVSTKTVNDAYDSYKQQYG---ENFDAFLSQNGFSRSS 110

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
           FK+ L    +    +K     K    +++              +  ++ +L S  D   Q
Sbjct: 111 FKESLRTNFLSEVALKKL--KKVSESQLKAAWKTY------QPKVTVQHILTSDEDTAKQ 162

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLES-DLHPQFQNLLK 251
               +                     +  +       + GK  +   +  L   F++   
Sbjct: 163 VISDLAA-----------GKDFATLAKTDSIDTATKDNGGKISFESNNKTLDATFKDAAY 211

Query: 252 K-SQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT 295
           K    + T  P     G E I + +    G   + K  L+A     
Sbjct: 212 KLKNGDYTQTPVKVTDGYEVIKMINHPAKGTFTSSKKALTASVYAK 257


>gi|332654773|ref|ZP_08420515.1| putative mucin-2 (MUC-2) (Intestinal mucin-2) [Ruminococcaceae
           bacterium D16]
 gi|332516116|gb|EGJ45724.1| putative mucin-2 (MUC-2) (Intestinal mucin-2) [Ruminococcaceae
           bacterium D16]
          Length = 426

 Score = 43.9 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 24/329 (7%), Positives = 75/329 (22%), Gaps = 62/329 (18%)

Query: 31  VSYKSWAMSSRIRTTINGEVITDGDI-----------SKRIALLKLQKI----------- 68
               +      +  T+    IT   +           ++  A++ +              
Sbjct: 48  FLSTAGLSGDTVVATVGDTEITADSLLYWLAATVDGTAQYYAMMGMSASDLPWDTEMEDG 107

Query: 69  --------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
                   N  L+  A+  L+   +  Q+   S     + T+       A+  G  A   
Sbjct: 108 STMAEGFLNNALQTAALYALVP--VIAQQEGLSVSDESAQTIQQAIDSFAQQAGGDAMVD 165

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
                     D + +   A   +   ++   +     +   +         N+ +     
Sbjct: 166 HMLWSSVLTRDLYTRMMQAGD-LNTQLMNRYYGDGAPDAPKDADILTYVSDNLQIAYKAK 224

Query: 181 RTVLFSIPDNK------------------------LQNQGFVQKRIKDAEESRLRLPKDC 216
             +L ++  +K                              +  +++   +      +  
Sbjct: 225 HILLKTVDTSKPIKDADGKATGEYEPLDDATVAQKKATAEDILAQLQATSDKEALFDELM 284

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDK 275
            +  +      +V+           +   F+           +    +  G   I     
Sbjct: 285 KEYSEDTDSSGNVNSPDGYEAKSGQMVAAFEEAALALQPGEISGIVESPYGYHIIL---- 340

Query: 276 RDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
           R        +    +     + +    ++
Sbjct: 341 RLPIQAADYRDQYVSYLMSQRQQGWLEQF 369


>gi|261378747|ref|ZP_05983320.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria cinerea
           ATCC 14685]
 gi|269144903|gb|EEZ71321.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria cinerea
           ATCC 14685]
          Length = 512

 Score = 43.9 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 30/309 (9%), Positives = 78/309 (25%), Gaps = 22/309 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +F S+  +         LI    V           S     +  E I+D  I+  +   +
Sbjct: 1   MFHSIEKYRTPAQVLLGLIALTFVGFGVSTVSHPGSDYIVQVGDEKISDHSINTAMQNEQ 60

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
             K          Q L+     KQ  +  GI+     +    V          +   + L
Sbjct: 61  A-KGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSQEQIKQIIVDDPNFHDAGGKFSHALL 119

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            +     +  +     +      ++N          + +   + +      +        
Sbjct: 120 SQYLSQRHMSEDQFVEEIRDQFALQNLV--NLVQNGVLVSDAQAEQLVKLTQVNRTIRSH 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
              PD  +         ++    +  +       ++     ++       Q + E+++  
Sbjct: 178 TFNPDEFIGQVKAADADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEVKN 237

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            ++  + +                        +       KA +  +    K      + 
Sbjct: 238 AYEERMARLPAE-------------------GEKLSFEKEKAAVENELKMKKAVADFNKA 278

Query: 305 VKKLRSNAI 313
            +KL  +A 
Sbjct: 279 KEKLGDDAF 287


>gi|255004191|ref|ZP_05278992.1| peptidyl-prolyl cis-trans isomerase D (ppiD) [Anaplasma marginale
           str. Virginia]
          Length = 630

 Score = 43.9 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 25/382 (6%), Positives = 94/382 (24%), Gaps = 84/382 (21%)

Query: 10  SDFI-KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI-------- 60
           + F+  +L       +F     V       S R    +    ++  + S           
Sbjct: 5   NVFVGAVLAAVLCAFVFVTFGSVLPFGGTASDRCVAKVGSSCLSLREYSMAYRGELSYIE 64

Query: 61  ----ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
                 L    +   ++++ +  ++ + + ++  ++  +   + ++             S
Sbjct: 65  SLVHQKLSEDDMRFGVKEMTLSRMVDDMVLEKFAKELNLRVSNKSIRDLIGDMPMFQDKS 124

Query: 117 AEDFS--------------------------------SFLDKQGIGDNHFKQYLAIQSIW 144
            +                                       + G   + +    A   + 
Sbjct: 125 GKLDEQRFKDLLADAGMTEASYIGKVRGSLPAFVLSECIFPRSGEVYSQYYDGFAQDVLR 184

Query: 145 PDVVKNDFM------------LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK- 191
             +                      + ++E   N+       +           + ++  
Sbjct: 185 GIMQSRTVDIVEISQSAVENTSTPTDSDLEAMYNEGTKNGELIMPEYRSAEYMIVSEDDA 244

Query: 192 ------LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG--------KAQY- 236
                   ++   + +  +  + R  L        + ++    +  G             
Sbjct: 245 LDEVTASNDEVESEIKNSELHDQRDVLNLVFPSESEASAAYKAIKEGKAFEAVVKDLGTT 304

Query: 237 --------LLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEI--ALK 285
                   + +  L  + +N +   ++   +  + +  G   + I  K  +  +    LK
Sbjct: 305 VEEVTLRNVTKELLPIEVRNTVFDLNEGEVSGVFRSVVGWHVMKILSKHPISAKDLKKLK 364

Query: 286 AYLSAQNTPTKIEKHEAEYVKK 307
             ++      K  +  +  ++K
Sbjct: 365 EKVAMSIKRQKARELFSASIRK 386


>gi|168335025|ref|ZP_02693139.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
           [Epulopiscium sp. 'N.t. morphotype B']
          Length = 525

 Score = 43.9 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 24/271 (8%), Positives = 67/271 (24%), Gaps = 23/271 (8%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKINGEL--------EKIAVQELIVETLKKQEIE 91
           + +  TI+   I +  I +            +L        +     + I E  K   ++
Sbjct: 64  NDLVATIDDVKINES-IYRAYLWSAQSAFEMQLGMDMGIMKDMEIEGQTIGEIAKDNALK 122

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
              +   +N              L+  +  +       G+         Q +   ++  +
Sbjct: 123 SVALAIITNNKADEMDLKLTADELALIEADASTFIDINGEIAKLHGFTKQDVIDLLIGAE 182

Query: 152 FMLKYG-------NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK-----LQNQGFVQ 199
              K             E    + ++   +  +   R +L    D        + +    
Sbjct: 183 LSDKVQRALSETYMPAEEEINERVELAKPSYEKVTARHILIGTVDETGAPVSDEVKAEKL 242

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN--T 257
               +  +             +++      +          ++ P+F+     + +    
Sbjct: 243 ALANELLDRIKAGEDIGKXAAEYSEDPGSKATNGEYTFGRGEMVPEFEAAAFDNADGAIW 302

Query: 258 TNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
             P  T  G       D  +   +     Y+
Sbjct: 303 AEPVETSYGYHIGQTIDHIEADEDAIRDEYI 333


>gi|323341667|ref|ZP_08081900.1| hypothetical protein HMPREF0357_10080 [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322464092|gb|EFY09285.1| hypothetical protein HMPREF0357_10080 [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 322

 Score = 43.9 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 10/119 (8%), Positives = 37/119 (31%), Gaps = 2/119 (1%)

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
                +E   ++     +  ++  + + +    D+          +++  + +       
Sbjct: 144 ILGDYLEANYDQYAKAFVEEKQPRVVSHILVKMDDSKNPTAEETAKMEKIDAALKEGKAF 203

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESD--LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAI 272
            +   +F+      + G   Y+ ++   +    +      +  TT    +Q G   I +
Sbjct: 204 SDVAMEFSDDGTAQNGGLLGYMDKTSSLVPEFIEGATSIKKGETTGWVTSQYGRHRITV 262


>gi|221046455|pdb|2JZV|A Chain A, Solution Structure Of S. Aureus Prsa-Ppiase
          Length = 111

 Score = 43.9 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 2/81 (2%)

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQFQNL-L 250
            ++   QK  +  +E      K     +K +         G+  Y+L+      F+    
Sbjct: 28  DDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDKDFEKALF 87

Query: 251 KKSQNNTTNPYVTQKGVEYIA 271
           K      +    +  G   I 
Sbjct: 88  KLKDGEVSEVVKSSFGYHIIK 108


>gi|218245405|ref|YP_002370776.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cyanothece sp. PCC
           8801]
 gi|257058441|ref|YP_003136329.1| parvulin-like peptidyl-prolyl isomerase-like protein [Cyanothece
           sp. PCC 8802]
 gi|218165883|gb|ACK64620.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cyanothece sp. PCC
           8801]
 gi|256588607|gb|ACU99493.1| parvulin-like peptidyl-prolyl isomerase-like protein [Cyanothece
           sp. PCC 8802]
          Length = 249

 Score = 43.9 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 20/264 (7%), Positives = 70/264 (26%), Gaps = 31/264 (11%)

Query: 41  RIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
            +   I  + +++ D+        L      L ++A + +I + +          + D  
Sbjct: 2   TVVLQIGDQELSEPDL------YPLLAQYKLLPQLAKEIIIDQAI---------ASIDCT 46

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                  +          + +   +            +  + +    V++  + K+  L 
Sbjct: 47  PEEETLGRQQFYQKHQIANETQLQE------WVKYHGITPEQLAHLTVRDIKLEKFKKLT 100

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            E       +K+    + ++ +++ +      Q                          +
Sbjct: 101 WEHQLESYFLKSKGKLDRVVYSLIRTKDPGIAQE---------LYFRIAEGESSFTELAK 151

Query: 221 KFASKIHDVSIGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
           +++      + G    +  +  HP    +         + P+   +    + +       
Sbjct: 152 QYSQGAEAQTGGLIGPVELNVPHPTISQILSTSQPGQLSPPHRVGEWFVILRLEKYLTAQ 211

Query: 280 GEIALKAYLSAQNTPTKIEKHEAE 303
            + A K  L  +     +     +
Sbjct: 212 LDEATKGRLLNELFQEWLSNELKK 235


>gi|313206481|ref|YP_004045658.1| ppic-type peptidyl-prolyl cis-trans isomerase [Riemerella
           anatipestifer DSM 15868]
 gi|312445797|gb|ADQ82152.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Riemerella
           anatipestifer DSM 15868]
 gi|315023578|gb|EFT36582.1| Peptidyl-prolyl cis-trans isomerase [Riemerella anatipestifer
           RA-YM]
 gi|325336073|gb|ADZ12347.1| Peptidyl-prolyl cis-trans isomerase, PpiC-type [Riemerella
           anatipestifer RA-GD]
          Length = 708

 Score = 43.9 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 76/251 (30%), Gaps = 10/251 (3%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING- 70
           +I +      L+ F + P    K +     I   +NGE IT  + ++++ L++ Q  +  
Sbjct: 12  WILIGFIAIALLAFLVNPDSLDKVFGKDPNILGKVNGEEITRDEYNEQLMLMRNQAESQG 71

Query: 71  ----ELEKIAVQELIVETLKKQEIEKSGITF--DSNTVNYFFVQHARNTGLSAEDFSSFL 124
                LE+ A Q L+   L KQ+ EK G+    D       +         + +   +F 
Sbjct: 72  QPLVGLEEQAWQTLVQSKLIKQQFEKMGLELTEDFFWNQLQYDPMFSQNPQNFDAKGNFK 131

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
             +   +    +       +   +            M           ITV +     ++
Sbjct: 132 LTEIKKEIEGLRESGRVQEYNQWLN--IRKTIEYRMMARQLFANVTNGITVGKKEAELIM 189

Query: 185 FSIPDNKLQNQGFVQKRIKDAEE-SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
            +       +   +       +   ++      N ++K        +      +L     
Sbjct: 190 KNRDQVADIDFVKIDYNTFAQKNPVKVTSEDLANFIKKHPVAFKAEASRNLGVVLFPAKP 249

Query: 244 PQFQNLLKKSQ 254
               + L   +
Sbjct: 250 SAIDDSLTLKE 260



 Score = 40.4 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 85/283 (30%), Gaps = 19/283 (6%)

Query: 47  NGEVITDGDISKRIALLKLQKINGELEKI------AVQELIVETLKKQEIEKSGITFDSN 100
           N   +T  D++  I    +         +      A    I ++L  +E+ K       N
Sbjct: 212 NPVKVTSEDLANFIKKHPVAFKAEASRNLGVVLFPAKPSAIDDSLTLKELRKLYNGEGEN 271

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
            +N        +  +  E  S    K G          A   +    V   +       +
Sbjct: 272 FLNSP------SDSMFVEINSEAPVKYGFVSEQEVPQEAQAFVKTATVGQVYGPYKSGGK 325

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
             +     K +    +  LI      +       +   ++  K A+    ++  D  K  
Sbjct: 326 YYVTKLAGKSEATLPKHILIAFAGTDVAKQDPSIKRTKEEAKKLADSIATQVKADPAKFT 385

Query: 221 KF----ASKIHDVSIGKAQYLLESD--LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICD 274
           +F    A K      G  Q++L         F + ++ +         TQ G   +   +
Sbjct: 386 QFVSFSADKGSAQQGGMLQWVLPGKSGFVKPFADWVESNPKGAVGVVETQFGYHVMVNEN 445

Query: 275 KRDLGGEIALKAYLSA-QNTPTKIEKHEAEYVKKLRSNAIIHY 316
           K  +     L   + A + T  K+      ++++++  +   +
Sbjct: 446 KMPVYKIANLAKDIRASKETQNKVYAQANTFIQQIQGKSFNEF 488


>gi|169617421|ref|XP_001802125.1| hypothetical protein SNOG_11889 [Phaeosphaeria nodorum SN15]
 gi|160703405|gb|EAT80933.2| hypothetical protein SNOG_11889 [Phaeosphaeria nodorum SN15]
          Length = 592

 Score = 43.9 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 28/85 (32%), Gaps = 6/85 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               + +DA        K      + +      + G   +   + LH  F+ +  + + +
Sbjct: 509 EKHSKKEDALRRLRDGEKFDVVASELSEDKRKQA-GSLGWKPRNTLHADFEKVAYELEPS 567

Query: 257 TT-----NPYVTQKGVEYIAICDKR 276
           TT         T+ G   I +  ++
Sbjct: 568 TTSNPKIGEVKTEHGYHIIMVEGRK 592


>gi|294900863|ref|XP_002777151.1| peptidylprolyl isomerase, putative [Perkinsus marinus ATCC 50983]
 gi|239884612|gb|EER08967.1| peptidylprolyl isomerase, putative [Perkinsus marinus ATCC 50983]
          Length = 219

 Score = 43.9 bits (101), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/153 (10%), Positives = 40/153 (26%), Gaps = 5/153 (3%)

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
           F            ++ + + + P   K+ ++ +   LE     +  K    + +    R 
Sbjct: 63  FYYFNVHTQQGQWEFPSTEVMPPTRRKSSYVYRMPELETAHVLHILKKHRGSRKPRSWRI 122

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD----CNKLEKFASKIHDVSIGKAQYLL 238
                   +   +     R +   +    L        +     +        G    + 
Sbjct: 123 DGEITLPVEEAIKELALIREEVVRQEPNGLAAMTKCFKDNARIESDCGTAKRGGDLGEIA 182

Query: 239 ESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
              + P F+ +         +    T+ GV  I
Sbjct: 183 RGRMQPSFEKVAFALPPGTLSPIIHTESGVHLI 215


>gi|294896512|ref|XP_002775594.1| peptidylprolyl isomerase, putative [Perkinsus marinus ATCC 50983]
 gi|294896514|ref|XP_002775595.1| peptidylprolyl isomerase, putative [Perkinsus marinus ATCC 50983]
 gi|239881817|gb|EER07410.1| peptidylprolyl isomerase, putative [Perkinsus marinus ATCC 50983]
 gi|239881818|gb|EER07411.1| peptidylprolyl isomerase, putative [Perkinsus marinus ATCC 50983]
          Length = 182

 Score = 43.9 bits (101), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/153 (10%), Positives = 40/153 (26%), Gaps = 5/153 (3%)

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
           F            ++ + + + P   K+ ++ +   LE     +  K    + +    R 
Sbjct: 26  FYYFNVHTQQGQWEFPSTEVMPPTRRKSSYVYRMPELETAHVLHILKKHRGSRKPRSWRI 85

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD----CNKLEKFASKIHDVSIGKAQYLL 238
                   +   +     R +   +    L        +     +        G    + 
Sbjct: 86  DGEITLPVEEAIKELALIREEVVRQEPNGLAAMTKCFKDNARIESDCGTAKRGGDLGEIA 145

Query: 239 ESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
              + P F+ +         +    T+ GV  I
Sbjct: 146 RGRMQPSFEKVAFALPPGTLSPIIHTESGVHLI 178


>gi|255595692|ref|XP_002536368.1| conserved hypothetical protein [Ricinus communis]
 gi|223519931|gb|EEF26015.1| conserved hypothetical protein [Ricinus communis]
          Length = 155

 Score = 43.9 bits (101), Expect = 0.033,   Method: Composition-based stats.
 Identities = 15/139 (10%), Positives = 44/139 (31%), Gaps = 1/139 (0%)

Query: 18  TYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAV 77
              ++++  I+   +       +++   +NG  IT   +   +    L     ++ +  +
Sbjct: 4   VACIIVVALILGGCNKSQNVEDAQVLARVNGNDITIQQLHAELPNASLTLDK-QVGQQIL 62

Query: 78  QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY 137
             LI   L  QE  K  +      +       A+    +    +     +    +   + 
Sbjct: 63  SRLIERQLLMQEAVKLNLDRTPEVMQALETSKAQIYAQAVIVKAIQSVDEMPMSSETAKL 122

Query: 138 LAIQSIWPDVVKNDFMLKY 156
           +A + I     ++    + 
Sbjct: 123 IATKLIGQQRKQDFIKGEV 141


>gi|191639211|ref|YP_001988377.1| peptidylprolyl isomerase [Lactobacillus casei BL23]
 gi|190713513|emb|CAQ67519.1| Foldase protein prsA precursor (Protease maturation protein prtM)
           [Lactobacillus casei BL23]
 gi|327383289|gb|AEA54765.1| Peptidyl-prolyl cis-trans isomerase [Lactobacillus casei LC2W]
 gi|327386472|gb|AEA57946.1| Peptidyl-prolyl cis-trans isomerase [Lactobacillus casei BD-II]
          Length = 299

 Score = 43.9 bits (101), Expect = 0.033,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 83/286 (29%), Gaps = 36/286 (12%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K+     +      + ++S      + +   T +G  +T+    K +             
Sbjct: 4   KMRLKVLLASTATALLLLSGCQSNQADQTVATYSGGKVTESSFYKELK-------QSPTT 56

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           K  +  +++         KS  T   N     + Q         E+F +FL + G   + 
Sbjct: 57  KTMLANMLIYRALNHAYGKSVNTKTVNDAYDSYKQQY------GENFDAFLSQNGFSRSS 110

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
           FK+ L    +    +K     K    +++              +  ++ +L S  D   Q
Sbjct: 111 FKESLRTNFLSEVALKKL--KKVSESQLKAAWKTY------QPKVTVQHILTSDEDTAKQ 162

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLES-DLHPQFQNLLK 251
               +                     +  +       + GK  +   +  L   F++   
Sbjct: 163 VISDLAA-----------GKDFATLAKTDSIDTATKDNGGKISFESNNKTLDATFKDAAY 211

Query: 252 K-SQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT 295
           K    + T  P     G E I + +    G   + K  L+A     
Sbjct: 212 KLKNGDYTQTPVKVTDGYEVIKMINHPAKGTFTSSKKALTASVYAK 257


>gi|160878273|ref|YP_001557241.1| hypothetical protein Cphy_0113 [Clostridium phytofermentans ISDg]
 gi|160426939|gb|ABX40502.1| hypothetical protein Cphy_0113 [Clostridium phytofermentans ISDg]
          Length = 377

 Score = 43.9 bits (101), Expect = 0.033,   Method: Composition-based stats.
 Identities = 19/295 (6%), Positives = 71/295 (24%), Gaps = 23/295 (7%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVITDGD----ISKRIALLKLQKING----------EL 72
           I  +    +     +   T+N   ++  +    +  R   ++                  
Sbjct: 65  ITVVPEVPAQEKQGKTVLTVNNLTVSYEEAVLYLQSRKEEIEELYGKDVWSLVVDEDGTT 124

Query: 73  EKIAVQELIVET--LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
            +  +++ + E          K+     + + +            ++      LD   + 
Sbjct: 125 YEQLLKDSVYEEIEYLMLVCSKAEELGITLSEDELLDADEFTADFTSNFSPEALDYYNVN 184

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                +      +   + ++  +     +  E+         +  +              
Sbjct: 185 KGVVNKIYRDNMLANKIYESLTLNVDTEVSDELARQAVFQYILVGKYGYDANGNRIEY-- 242

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL 250
             +     + R     E  L      +     +   ++V I     + + D+    + + 
Sbjct: 243 TKEQLEESKTRAYKLREEALDAKNFYDFAAANSDDENEVEI----TVGKGDMKENLEKVA 298

Query: 251 KK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
               +   ++   T  G          D     + K  +  +      +    ++
Sbjct: 299 FALDEGEISDVIDTADGYFIFRCVSLLDRNATDSKKEDIIIKRQEEAFDVEYNKW 353


>gi|112148585|gb|ABI13575.1| protease maturation protein precursor [Lactobacillus helveticus
           CNRZ32]
          Length = 301

 Score = 43.9 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 74/295 (25%), Gaps = 43/295 (14%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
              L   + +  T F L+        +    A   +       + +T  +  K +     
Sbjct: 1   MNKLLKPLMMTVTGFSLLSLAGCSTSNNAEVAQYGK------NKKVTQEEFYKELKSSPS 54

Query: 66  QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
                   K  +  L+V    K +  K       +                 E + S  +
Sbjct: 55  S-------KTVLANLLVYDALKAKYGKKLDIKKVDNEYES----------YKERYGSQFN 97

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
              +   + +           + +     +    + ++ A          ++Y     + 
Sbjct: 98  NFLVQGGYTRASFKRMIQINFLSRIALESQIKPTDKQLKAAW--------KDYQPSITVQ 149

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLES--DL 242
            I          V        E         +  +K++       + GK     +    L
Sbjct: 150 HILTTSKATAEQV-------IEQLNDGKSFSSLAKKYSVDSSTSNNGGKLAAFNQENKSL 202

Query: 243 HPQFQNLLKK-SQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT 295
              F+N   K      T  P     G E I +    D G   + +A L+ +    
Sbjct: 203 DSTFKNAAYKLEDGEYTKTPVKVTDGYEVIKMVKHPDKGNFESNRAELTKELYNK 257


>gi|218202140|gb|EEC84567.1| hypothetical protein OsI_31339 [Oryza sativa Indica Group]
          Length = 649

 Score = 43.9 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 6/51 (11%), Positives = 18/51 (35%), Gaps = 3/51 (5%)

Query: 219 LEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTNPYVT--QKG 266
            ++++        G   +     +   FQ++   +    T+ P+ +    G
Sbjct: 103 AQEYSECPSGKKGGDLGWFPRGKMAGPFQDVAFSTPVGATSAPFKSTVPFG 153


>gi|322412103|gb|EFY03011.1| foldase protein PrsA [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 354

 Score = 43.9 bits (101), Expect = 0.035,   Method: Composition-based stats.
 Identities = 29/309 (9%), Positives = 70/309 (22%), Gaps = 38/309 (12%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
                ++    V  ++       +    ++ G+ I+  D    I             K  
Sbjct: 6   KLITGIVTLASVITLTACQSTNDNTKVVSMKGDTISVSDFYNEIK------NTEVSRKAM 59

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           +  LI    + Q  +K          N    Q+  +        S   +           
Sbjct: 60  LHLLIGRVFEAQYGDKVSNKEVEKAYNKTADQYGASFSGVLAQASLTPETY--------- 110

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
               Q     +V+            E+   + +    +    +   V+            
Sbjct: 111 --KKQIRSSKLVEYAVREAAK---KELTTKEYQKAYESYTPTMAAQVITL---------D 156

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             +K     EE +          ++  +        K      +      +      +  
Sbjct: 157 SEEKANHTLEEVKAEGADFATIAKEKTTSADKKVAYKFDSGTTTLPADVVKAASSLKEGE 216

Query: 257 TTNPYVT------QKGVEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEK--HEAEYVKK 307
            +           Q     I +  K +   +    +  L A     K +    + + + K
Sbjct: 217 MSEVISVLDPTTYQNKFYIIKVNKKAEKKADWKVYQKRLKAIILAEKTKDVNFQNKIIAK 276

Query: 308 LRSNAIIHY 316
               A +  
Sbjct: 277 ALDKANVKI 285


>gi|223040376|ref|ZP_03610651.1| WbnF [Campylobacter rectus RM3267]
 gi|222878334|gb|EEF13440.1| WbnF [Campylobacter rectus RM3267]
          Length = 487

 Score = 43.9 bits (101), Expect = 0.035,   Method: Composition-based stats.
 Identities = 21/272 (7%), Positives = 62/272 (22%), Gaps = 6/272 (2%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           +N E I    ++ +   +  +      +    +  I E+  +  ++   +          
Sbjct: 111 VNDEDIVKYIVADQNFYVNGKFDKELYKNTLKRARITESEYEDSLKNVILLDKLRHALNL 170

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
             +      L+A           + +    +    +     + +          E ++  
Sbjct: 171 PAKEQDINMLTASFLMQDKISMQVVEAATDEIKIDEDAVKKLWEERKNDYKTMTEFKLDT 230

Query: 166 NKQK---MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                      T           +            +    +  +           LE++
Sbjct: 231 KFIPTISSDANTTELMEFYNENKNEYKGSDDKIKEFEAVKDEVLKDYNLKQTKKVALEEY 290

Query: 223 ASKIHDVSIGKAQYLLESDLHP-QFQNLLKKSQNNTTNPYVTQKGVEYIAICDK--RDLG 279
                D            D        L    + +T  P+  + G   + + +     + 
Sbjct: 291 LKIKKDEKQADISITTLEDNASLPIDELKSAKKGDTLKPFEYEDGYMIVKVKEIVAPRVM 350

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
                K  +       K ++      K+L   
Sbjct: 351 SFDEAKDQILELYKEQKTQETVEAKAKELLEK 382


>gi|296313658|ref|ZP_06863599.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
           polysaccharea ATCC 43768]
 gi|296839799|gb|EFH23737.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
           polysaccharea ATCC 43768]
          Length = 512

 Score = 43.9 bits (101), Expect = 0.035,   Method: Composition-based stats.
 Identities = 29/309 (9%), Positives = 78/309 (25%), Gaps = 22/309 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +F S+  +         LI    V           S     +  E I+D  I+  +   +
Sbjct: 1   MFHSIEKYRTPAQVLLGLIALTFVGFGVSTVSHPGSDYIVQVGDEKISDHSINVTMQNEQ 60

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                        Q L+     KQ  +  GI+     +    V          +   + L
Sbjct: 61  A-AGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSQEQIKQIIVDDPNFHDAGGKFSHALL 119

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            +     +  +     +      ++N          + +   + +      +        
Sbjct: 120 SQYLSQRHMSEDQFVEEIRDQFALQNLV--NLVQNGVLVSDTQAEQLVKLTQVNRTIRSH 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
              PD  +      +  ++    +  +       ++     ++       Q + E+++  
Sbjct: 178 TFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEVKN 237

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            ++  + +                        +       KA +  +    K      + 
Sbjct: 238 AYEERMARLPAE-------------------GEKPSFEKEKAAVENELKMKKAVADFNKA 278

Query: 305 VKKLRSNAI 313
            +KL  +A 
Sbjct: 279 KEKLGDDAF 287


>gi|56416723|ref|YP_153797.1| hypothetical protein AM516 [Anaplasma marginale str. St. Maries]
 gi|222475088|ref|YP_002563503.1| peptidyl-prolyl cis-trans isomerase D (ppiD) [Anaplasma marginale
           str. Florida]
 gi|56387955|gb|AAV86542.1| hypothetical protein AM516 [Anaplasma marginale str. St. Maries]
 gi|222419224|gb|ACM49247.1| peptidyl-prolyl cis-trans isomerase D (ppiD) [Anaplasma marginale
           str. Florida]
          Length = 670

 Score = 43.9 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 28/383 (7%), Positives = 99/383 (25%), Gaps = 85/383 (22%)

Query: 10  SDFI-KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKR-------IA 61
           + F+  +L       +F     V       S R    +    ++  + S         I 
Sbjct: 44  NVFVGAVLAAVLCAFVFVTFGSVLPFGGTASDRCVAKVGSSCLSLREYSMAYRGELSYIE 103

Query: 62  LLKLQKINGE------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
            L  QK++ +      ++++ +  ++ + + ++  ++  +   + ++             
Sbjct: 104 SLVHQKLSEDDIKRFGVKEMTLSRMVDDMVLEKFAKELNLRVSNKSIRDLIGDMPMFQDK 163

Query: 116 SAEDFS--------------------------------SFLDKQGIGDNHFKQYLAIQSI 143
           S +                                       + G   + +    A   +
Sbjct: 164 SGKLDEQRFKDLLADAGMTEASYIGKVRDSLPAFVLSECIFPRSGEVYSQYYDGFAQDVL 223

Query: 144 WPDVVKNDFM------------LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
              +                      + ++E   N+       +           + ++ 
Sbjct: 224 RGIMQSRTVDIVEISQSAVENTSTPTDSDLEAMYNEGTKNGELIMPEYRSAEYMIVSEDD 283

Query: 192 -------LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG--------KAQY 236
                    ++   + +  +  + R  L        + ++    +  G            
Sbjct: 284 ALDEVTASNDEVESEIKNSELHDQRDVLNLVFPSESEASAAYKAIKEGKAFEAVVKDLGT 343

Query: 237 ---------LLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEI--AL 284
                    + +  L  + +N +   ++   +  + +  G   + I  K  +  +    L
Sbjct: 344 TVEEVTLRNVTKELLPIEVRNTVFDLNEGEVSGVFRSVVGWHVMKILSKHPISAKDLKKL 403

Query: 285 KAYLSAQNTPTKIEKHEAEYVKK 307
           K  ++      K  +  +  ++K
Sbjct: 404 KEKVAMSIKRQKARELFSASIRK 426


>gi|45658827|ref|YP_002913.1| hypothetical protein LIC13000 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45602072|gb|AAS71550.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 293

 Score = 43.5 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 30/310 (9%), Positives = 75/310 (24%), Gaps = 51/310 (16%)

Query: 3   SKVFTSLSDFI--KLLTTY--FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK 58
           SK+F   +  I  K           +  ++ ++  +   + S     +NG  I   +  +
Sbjct: 10  SKMFFGKNIVIGPKYFLGAGALFGFLLALIGLLFPEREILLSDTVAEVNGNYIKKDEYFR 69

Query: 59  RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
            +  L     N   E+                                     N      
Sbjct: 70  TLTALSSDSKNPITEEA----------------------------------RANVLERLI 95

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
           +    + +        +  L   SI   V+++            +      + N      
Sbjct: 96  EEELLVQRGLELGFAREDRLIRASIVRAVIQSIISENVSEKPNVLELRSYFLLNRDKFLK 155

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
             R  +     +   +   + K +++A  +                K+ D          
Sbjct: 156 TSRYQVMVYQQSDEVSATRISKELREAGRTMAPNVYYIPNTLLPLRKLLDYLG------- 208

Query: 239 ESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIA--ICDKRDLGGEIALKAYLSAQNTPTK 296
                     L        ++P  + +    +   + +        ++K  + A     K
Sbjct: 209 ----PDVVLALGNLKSGEVSDPIKSGEKFFVVKVFVLEPGSTPDFDSVKKEVEASYIQEK 264

Query: 297 IEKHEAEYVK 306
            ++   EY+ 
Sbjct: 265 GDRTLREYLD 274


>gi|116624599|ref|YP_826755.1| DSBA oxidoreductase [Candidatus Solibacter usitatus Ellin6076]
 gi|116227761|gb|ABJ86470.1| DSBA oxidoreductase [Candidatus Solibacter usitatus Ellin6076]
          Length = 340

 Score = 43.5 bits (100), Expect = 0.037,   Method: Composition-based stats.
 Identities = 8/49 (16%), Positives = 22/49 (44%)

Query: 269 YIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           +      +  G   +L+  +    T  +++  + E++K LR+ A +  +
Sbjct: 109 FFKENSTKLKGDFKSLEEQIRNFLTAQRLQARQQEFLKSLRTAAKVEVF 157



 Score = 42.7 bits (98), Expect = 0.078,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 2/117 (1%)

Query: 43  RTTINGEVITDGDISKRI--ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
              +NG  I   +I  ++   L +LQ+    L K  +  +I + L + E  + G+     
Sbjct: 30  AAMVNGAPILASEIDAKLGNDLAQLQQQIFNLRKKQLNTVIDQKLLEDESARRGVMIAEL 89

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
             +         T   AE F      +  GD    +      +    ++        
Sbjct: 90  VQSEVTSHVTPATSAEAEKFFKENSTKLKGDFKSLEEQIRNFLTAQRLQARQQEFLK 146


>gi|257418300|ref|ZP_05595294.1| ppiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis T11]
 gi|257160128|gb|EEU90088.1| ppiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis T11]
          Length = 342

 Score = 43.5 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 25/313 (7%), Positives = 79/313 (25%), Gaps = 41/313 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +L     + + S  + +  S+   T+ G  IT  D   +I             + 
Sbjct: 1   MKKKLILAAAGAMAVFSLAACSSGSKDIATMKGSTITVDDFYNQIK-------EQSTSQQ 53

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           A  ++++  + +++             +    +   +     E                +
Sbjct: 54  AFSQMVIYKVFEEKYGD-------KVTDKAIQKKFDDAKKQVEAQGGKFSDALTQAGLTE 106

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    Q    + ++          + ++             + +               Q
Sbjct: 107 KSFKKQLKQAEAMQVGLKDHLKITDEDLKTAWASFHPEVEAQII---------------Q 151

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF--QNLLKK 252
              +   K  ++            +  ++        GK ++  +S   P    +   K 
Sbjct: 152 VASEDDAKAVKKEITDGGDFAKIAKDKSTDATTKKDGGKIKFDSQSTTVPAEVKEAAFKL 211

Query: 253 SQNNTTNPYVTQKG------VEYIAICDKRDLGGE-IALKAYLSAQNTPTKI--EKHEAE 303
                + P               + +   +  G +    +  +      TK+  +  +A+
Sbjct: 212 KDGEVSEPIAATNAQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKIAEDTKLADQTFQAK 271

Query: 304 YVKKLRSNAIIHY 316
            +      A +  
Sbjct: 272 VISDELKAANVKI 284


>gi|125975115|ref|YP_001039025.1| hypothetical protein Cthe_2633 [Clostridium thermocellum ATCC
           27405]
 gi|256003230|ref|ZP_05428222.1| hypothetical protein ClothDRAFT_0189 [Clostridium thermocellum DSM
           2360]
 gi|281418466|ref|ZP_06249485.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum JW20]
 gi|125715340|gb|ABN53832.1| hypothetical protein Cthe_2633 [Clostridium thermocellum ATCC
           27405]
 gi|255992921|gb|EEU03011.1| hypothetical protein ClothDRAFT_0189 [Clostridium thermocellum DSM
           2360]
 gi|281407550|gb|EFB37809.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum JW20]
 gi|316939281|gb|ADU73315.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
           thermocellum DSM 1313]
          Length = 364

 Score = 43.5 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 34/312 (10%), Positives = 88/312 (28%), Gaps = 51/312 (16%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGE------------------------LEKIAVQ 78
             T+ GE IT  +    +  +K+Q  N                           ++ A+ 
Sbjct: 40  VGTVAGEKITTKEFKYFLGYVKIQMENDAQLQDQASKEAFWDSKIEGVDAKELAKQKALD 99

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNY-------------FFVQHARNTGLSAEDFSSFLD 125
                 ++  +  + G+  +   +                F Q A+NTG+        L 
Sbjct: 100 SCKEFKIQLLKARERGLFLNDKDMQEIENSITTLLNQMAQFDQAAKNTGVEVMSAEEMLK 159

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
                     + +         +  D        E E+     + K++  +  +   + +
Sbjct: 160 DTYGVTIQEYKEILKDLRLVLKLVEDEQKNITITEEELRNRYNENKDVFDKITVRHIIFY 219

Query: 186 SIPDNKLQN-QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI--GKAQ------- 235
           +I      +     +K+  +  +  L        +E  A ++ + S   G          
Sbjct: 220 TINPKTDVSLSEDAKKKAYENAKKALERANKGEDMEALALELSEDSGVEGNKGILEINSL 279

Query: 236 YLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT 295
            + E  L    +   +    + T+   T  G   + I  + +      +   +       
Sbjct: 280 KVNEPKLSNLVKWAYEHKVGD-TDIVETGYGYHVVKIEKRTE---YKDVVQNVKNVILSE 335

Query: 296 KIEKHEAEYVKK 307
           +  +   ++ ++
Sbjct: 336 RYNQILGQWKQE 347


>gi|114569954|ref|YP_756634.1| hypothetical protein Mmar10_1404 [Maricaulis maris MCS10]
 gi|114340416|gb|ABI65696.1| hypothetical protein Mmar10_1404 [Maricaulis maris MCS10]
          Length = 645

 Score = 43.5 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 41/114 (35%), Gaps = 5/114 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD----I 56
           M S         I L+    +++ F I    +   +  S      +  E I+  +     
Sbjct: 1   MLSNFRAFAQSPIALIIIVLLVLSFAIAMPGAGGIFTGSGDAVVVVGPERISQREMATAF 60

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           ++ +A L+ Q       ++A +E I   + +Q+I  + +   +  +       A
Sbjct: 61  NREVARLQEQN-PDVTREMAREEGIAYQVLQQQITMATMAARARDLGLAISDVA 113


>gi|300811432|ref|ZP_07091927.1| putative foldase protein PrsA [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497590|gb|EFK32617.1| putative foldase protein PrsA [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 307

 Score = 43.5 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 29/307 (9%), Positives = 72/307 (23%), Gaps = 33/307 (10%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTIN--GEVITDGDISKRIALLKLQKINGEL 72
           +      + +      +   + A SS   T +N  G  IT  +  + +            
Sbjct: 1   MKKHLKKIAVLAGAAAIGLSTAACSSSSATVVNYKGGKITQDEYYEAMKDTSA------- 53

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            +  +  LI+    K +      +   N     + +   +   +   +S           
Sbjct: 54  GQSTLVSLIIYRTLKAQYGDKVSSKKINAEYNKYKKQYGSNFSTVLSYSGLT-------- 105

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
              +                         +     +     T            +     
Sbjct: 106 --TKSFKQNLATNLYSVAALKDLKKPTTTQEKNWWKSYHTKTT------VQHIVVDKKST 157

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
                 + +   +  +  +        +K A K+             +        + K 
Sbjct: 158 AETVIKKLKSGTSFATLAKKYSTDTATKKKAGKMAAFDSTD-----TNLSSTFKSAVWKL 212

Query: 253 SQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT--KIEKHEAEYVKKLR 309
            +   T  P  T  G E I +    + G     K+++  Q             + + K+ 
Sbjct: 213 KEGEYTTTPVKTSSGYEVIKVLKTTEKGSYTKNKSFIDKQLYAKWAADSNTMTKIISKVL 272

Query: 310 SNAIIHY 316
             A ++ 
Sbjct: 273 KKANVNI 279


>gi|218440442|ref|YP_002378771.1| hypothetical protein PCC7424_3511 [Cyanothece sp. PCC 7424]
 gi|218173170|gb|ACK71903.1| conserved hypothetical protein [Cyanothece sp. PCC 7424]
          Length = 257

 Score = 43.5 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 20/237 (8%), Positives = 65/237 (27%), Gaps = 16/237 (6%)

Query: 66  QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
            + NG+L++I  + L  + + +   E+     D            +     A D  ++L 
Sbjct: 20  LQKNGQLKEICQKVLHQKIINRVAQERHLTVTDEEIQAEADCFRRQMRLEKAADTLAWLA 79

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
            + +    ++  +  + +   + ++ F  +      E   N +++    +          
Sbjct: 80  DELMTPEDWETGIRERLLTQKLAESLFGKEVEKSFAENKLNFEQIILYQIIVPYETLAWE 139

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ 245
                + +   F Q                    +  +           +++L  ++   
Sbjct: 140 IFYQIEEEEISFYQAAHLY-------------NFDAKSRYYCGFEGQVYRWILNPEISSV 186

Query: 246 FQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEA 302
                         P  T++G     I +         ++  +  +     + +   
Sbjct: 187 L---FSSKVGEVIPPLKTEQGYHLFLIEEFISPELTPEIRQEILNKMFNEWLTRELN 240


>gi|1314566|gb|AAC44059.1| unknown [Sphingomonas sp. S88]
          Length = 300

 Score = 43.5 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 29/295 (9%), Positives = 81/295 (27%), Gaps = 50/295 (16%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE--LEKIAVQELIVETLK 86
              S +      ++  +++G+ IT  +++  +   ++ +       E++A+Q +I   + 
Sbjct: 19  GCGSKEGKLDKGQVVASVDGDEITIFELNAEVQATQVPQGTDRKLAEQMALQRIIERKIL 78

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
            +   +  +      +                                    A + I   
Sbjct: 79  AKYAREQKLDKTPVFLIQQ-------------------------------RRADELILTT 107

Query: 147 VVKNDFMLKY-GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
           ++++          + EI   +    +   +  +        P      +      +K  
Sbjct: 108 LLRDKIAGGIAQPTDAEIAQYEAAHPDRFAQRKIYSIEQIVFPPPGSAAKFKEFAPLKTL 167

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQK 265
           ++   +L  D  +  +  ++           L  + L P+    +            TQ+
Sbjct: 168 DQLAAKLTADGVQFRRAPTQ-----------LDTAALPPEIAAKIAALPAQELFILPTQQ 216

Query: 266 GV--EYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAI--IHY 316
           GV    I     + L G+   +          +  K     +      A   + Y
Sbjct: 217 GVTANVITGTTIQPLAGDQ-ARELALNTLRTERFSKAADAQLNDRLKKARESVKY 270


>gi|126659217|ref|ZP_01730355.1| hypothetical protein CY0110_04558 [Cyanothece sp. CCY0110]
 gi|126619522|gb|EAZ90253.1| hypothetical protein CY0110_04558 [Cyanothece sp. CCY0110]
          Length = 260

 Score = 43.5 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 23/255 (9%), Positives = 59/255 (23%), Gaps = 31/255 (12%)

Query: 41  RIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
            I   I  + I+  DI   +A  +L           + +L  E +  Q I     T +  
Sbjct: 5   NIVLKIGDQAISSEDIYPLLAQYRL-----------LPQLAKEIIIDQAIADITCTPEET 53

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
           T+        +      +                              +    L   +L+
Sbjct: 54  TLAKQQFYQKQQISDENQLKVWLNHHGMTP------------------EQLETLSVRDLK 95

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
           +E   +      +       +  L  +  + ++ +     +                   
Sbjct: 96  IEKFKHLTWGDKLDPYFVKCKGQLDRVVYSLIRTKDPGVAQELYFRIQEGE-NTFSELAR 154

Query: 221 KFASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
           +++      + G    +  +       Q L        + P    +    + +       
Sbjct: 155 QYSQGSEAQTGGLLGPVELNTPHPKIAQILAASRPGQLSPPTQVGEWWIIVRLEKYMSAQ 214

Query: 280 GEIALKAYLSAQNTP 294
            +   K  L  +   
Sbjct: 215 LDDNTKQRLLNELFQ 229


>gi|308389331|gb|ADO31651.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
           meningitidis alpha710]
 gi|325136276|gb|EGC58884.1| hypothetical protein NMBM0579_1013 [Neisseria meningitidis M0579]
 gi|325208178|gb|ADZ03630.1| conserved hypothetical protein [Neisseria meningitidis NZ-05/33]
          Length = 512

 Score = 43.5 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 33/309 (10%), Positives = 82/309 (26%), Gaps = 22/309 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +F S+  +         LI    V           +     +  E I+D  I+  I   +
Sbjct: 1   MFHSIEKYRTPAQVLLGLIALTFVGFGVSTVSHPGADYIVQVGDEKISDHSINNAIQNEQ 60

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                G       Q L+     KQ  +  GI+  S  +    V        + +   + L
Sbjct: 61  A-DGGGPSRDAVFQSLLQRAYLKQGAKLLGISVSSEQIKQIIVDDPNFHDANGKFDHALL 119

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
           ++     +  +     +      ++N          + +   + +      +        
Sbjct: 120 NRYLSQRHMSEDQFVEEIRDQFALQNLV--NLVQNGVLVGDAQAEQLIRLTQVNRTIRSH 177

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
              PD  +      +  ++    +  +       ++     ++       Q + E+++  
Sbjct: 178 TFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEVKN 237

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            F+  + +   N                            KA +  +    K      + 
Sbjct: 238 AFEERVARLPANEAKL-------------------SFEQEKAAVENELKMKKAVADFNKA 278

Query: 305 VKKLRSNAI 313
            +KL  +A 
Sbjct: 279 KEKLSDDAF 287


>gi|162451693|ref|YP_001614060.1| foldase protein prsA 4 precursor [Sorangium cellulosum 'So ce 56']
 gi|161162275|emb|CAN93580.1| Foldase protein prsA 4 precursor (EC 5.2.1.8) [Sorangium cellulosum
           'So ce 56']
          Length = 172

 Score = 43.5 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 10/81 (12%), Positives = 25/81 (30%), Gaps = 2/81 (2%)

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS-IGKAQYLLESD-LHPQFQNL 249
            + +     R  +A +           + +++ +    S  G    +  +D L P     
Sbjct: 88  TRTREEACLRAMEARDKIRGGADFGEAVAQYSEEAGAASRGGSLGTVERADVLPPFADAA 147

Query: 250 LKKSQNNTTNPYVTQKGVEYI 270
            +      ++   T+ G   I
Sbjct: 148 FELELQQLSDVVETRYGFHVI 168


>gi|94969502|ref|YP_591550.1| hypothetical protein Acid345_2475 [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551552|gb|ABF41476.1| hypothetical protein Acid345_2475 [Candidatus Koribacter versatilis
           Ellin345]
          Length = 234

 Score = 43.5 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 23/196 (11%), Positives = 59/196 (30%), Gaps = 9/196 (4%)

Query: 31  VSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI------NGELEKIAVQELIVET 84
            S ++  +  R+  +++   I   D  + +A   LQ+            +  +Q L+ + 
Sbjct: 19  PSSRAGEVIDRLVASVDSTPILQSDWDEAVAFEALQQGRLISSFTENDRREVLQHLVDQR 78

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLS---AEDFSSFLDKQGIGDNHFKQYLAIQ 141
           L + +I  S I           +   R         E + S L   G+     ++    Q
Sbjct: 79  LIQAQIGDSQIAAAEEREITKSLDDLRKLYPQATTDEAWRSLLQTYGLDQETVRRKTTAQ 138

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
                 +      +      ++ +  +      V++   +    ++   K++     Q+ 
Sbjct: 139 LEALRFINLRLRPESRIARADVESYYKNNYVPEVQKRGEKPEELTVVSPKIEEILRQQRM 198

Query: 202 IKDAEESRLRLPKDCN 217
                     L    +
Sbjct: 199 ATLLTNWLQELHNHAD 214


>gi|472835|gb|AAA17676.1| ORF1 [Lactococcus lactis subsp. cremoris]
          Length = 295

 Score = 43.5 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 87/286 (30%), Gaps = 36/286 (12%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K+     +      + ++S      + +   T +G  +T+  + K +             
Sbjct: 4   KMRLKVLLASTATALLLLSGCQSNQTDQTVATYSGGKVTESSLYKELK-------QSPTT 56

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           K  +  +++         K   +  + TV   +  + +  G   E+F +FL + G   + 
Sbjct: 57  KTMLANMLIYRALNHAYGK---SVSTKTVYDAYDSYKQQYG---ENFDAFLSQNGFSRSS 110

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
           FK+ L    +    +K     K    +++              +  ++ +L S  D   Q
Sbjct: 111 FKESLRTNFLSEVALKKL--KKVSESQLKAAWKTY------QPKVTVQHILTSDEDTAKQ 162

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQY-LLESDLHPQFQNLLK 251
               +                     +  +       + GK  + L    L   F++   
Sbjct: 163 VISDLAA-----------GKDFAMLAKTDSIDTATKDNGGKISFELNNKTLDATFKDAAY 211

Query: 252 K-SQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT 295
           K    + T  P     G E I + +    G   + K  L+A     
Sbjct: 212 KLKNGDYTQTPVKVTDGYEVIKMINHPAKGTFTSSKKALTASVYAK 257


>gi|256372364|ref|YP_003110188.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008948|gb|ACU54515.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 337

 Score = 43.5 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 33/309 (10%), Positives = 69/309 (22%), Gaps = 28/309 (9%)

Query: 19  YFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQ 78
           +F LI      +++    A    +  T+    +T   +   +A +          K  V 
Sbjct: 5   WFGLIPLAGAVVLASCGSAS---VAATVGNRTLTTSQLEAELADVAAN-------KAFVS 54

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
           EL+              T                   +                      
Sbjct: 55  ELVASHEPVWGPHDQSYTALFVDNILSRRITIMRVQAALGRMHVQPSAVATSLGTALAEQ 114

Query: 139 AI------QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
           +               +         +E+E       +    V+ Y              
Sbjct: 115 SAGGQTVFSGFPRSYQQRLIRDSVDIVELEAALGHVSLTTSGVQAYYRAH---PADFESY 171

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKL--EKFASKIHDVSIGKAQYLLESDLHPQF---- 246
                +     +AE    +L K  +     K +S  +    G      E      F    
Sbjct: 172 CGSEILVGTPTEAEAVVAKLHKGQSFAAVAKSSSTQNAAGGGALGCGTEGQYASSFGSGV 231

Query: 247 -QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYV 305
             ++        +       G     I  + ++    A    L+A    +  +    +Y+
Sbjct: 232 ATSVTSLPVGTPSGVVQVPNGFAVFEITSRSEIPFSQA--ELLAADTMVSHGQTLLNDYL 289

Query: 306 KKLRSNAII 314
            +    A I
Sbjct: 290 ARTVHTANI 298


>gi|325181724|emb|CCA16179.1| peptidylprolyl cistrans isomerase NIMAinteracting 1 putative
           [Albugo laibachii Nc14]
          Length = 187

 Score = 43.5 bits (100), Expect = 0.044,   Method: Composition-based stats.
 Identities = 5/57 (8%), Positives = 14/57 (24%), Gaps = 1/57 (1%)

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                ++ +        G         +   F+        N  ++   +  G+  I
Sbjct: 127 FEEIAKEESDCSSAKRGGDLGMFTRGQMQASFEAAAFALEVNQLSDIVESDSGIHLI 183


>gi|116495723|ref|YP_807457.1| peptidylprolyl isomerase [Lactobacillus casei ATCC 334]
 gi|116105873|gb|ABJ71015.1| Parvulin-like peptidyl-prolyl isomerase [Lactobacillus casei ATCC
           334]
          Length = 299

 Score = 43.5 bits (100), Expect = 0.044,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 88/286 (30%), Gaps = 36/286 (12%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K+     +      + ++S      + +   T +G  +T+ +  K +             
Sbjct: 4   KMRLKVLLASTATALLLLSGCQSNQADQTVATYSGGKVTESNFYKELK-------QSPTT 56

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           K  +  +++         K   +  + TVN  +  + +  G   E+F +FL + G   + 
Sbjct: 57  KTMLANMLIYRALNHAYGK---SVSTKTVNDAYDSYKQQYG---ENFDAFLSQNGFSRSS 110

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
           FK+ L    +    +K     K    +++              +  ++ +L S  D   Q
Sbjct: 111 FKESLRTNFLSEVALKKL--KKVSESQLKAAWKTY------QPKVTVQHILTSDEDTAKQ 162

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLES-DLHPQFQNLLK 251
               +                     +  +       + GK  +   +  L   F++   
Sbjct: 163 VISDLAA-----------GQDFATLAKTDSIDTATKDNGGKISFESNNKTLDATFKDAAY 211

Query: 252 K-SQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT 295
           K    + T  P     G E I + +    G   + K  L+A     
Sbjct: 212 KLKNGDYTQTPVKVTDGYEVIKMINHPAKGTFTSSKKALTASVYAK 257


>gi|92117281|ref|YP_577010.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter
           hamburgensis X14]
 gi|91800175|gb|ABE62550.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter
           hamburgensis X14]
          Length = 635

 Score = 43.5 bits (100), Expect = 0.044,   Method: Composition-based stats.
 Identities = 28/395 (7%), Positives = 90/395 (22%), Gaps = 87/395 (22%)

Query: 1   MTSKVFTSLSDFIKLLTT----YFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI 56
           M   +  + S+++  +        +++ F I  I         S    T+    I+    
Sbjct: 1   MLRGIRNASSNWLGKILMSIVMGLLIVAFGIWGIADIFHGFGQSN-LATVGSTEISTEQF 59

Query: 57  SKRIALLKLQKING-------------ELEKIAVQELI------------------VETL 85
            +       Q                  L++  +Q++I                   E  
Sbjct: 60  RQIYNDRLQQLARQFGRSLSPDQVRALGLDRQVLQQVIAEAALDEDARRKGLNASDDEIR 119

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH--------FKQY 137
           ++   + +    +       F    R  G + + + +      +                
Sbjct: 120 RQIMSDPNFKGANDAFDPARFAGLIRQMGYTEQRYVTEQRHTTLRREIAGTVAAGVEPSK 179

Query: 138 LAIQSIWPDVVKNDFMLKYG-----------NLEMEIPANKQKMKNITVREYLIRTVLFS 186
             ++ +     +   +                   ++ +     K         +     
Sbjct: 180 TLLEMLNHFQNEQRTIDYVKLGVPQAGTIDPPTPEQLASYFDAHKVQFRAPEFRKIAFVV 239

Query: 187 IPDNKLQ-----NQGFVQKRIKDAEESRLRLPKD------CNKLEKFASKIHDVSIG--- 232
           +    +      +    +K  +  ++      K          + +  +    ++ G   
Sbjct: 240 MTPEGIAKTTAVSDEDAKKAYEQQKDKLSTPEKRQLWQIVFPNVTEAQAARSKIAGGASF 299

Query: 233 --------------KAQYLLESDL--HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
                             + +S++      +       +  + P   + GV  + +    
Sbjct: 300 DDIAKERNLAASDVDLGIISKSEIIDPAVAEAAFSLKADEVSQPIQGRFGVALVKVGKIE 359

Query: 277 DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
              G       ++A+             V  L + 
Sbjct: 360 P--GNQPTYDSVAAKLKHDIAVDRARAEVNDLHNK 392


>gi|16331633|ref|NP_442361.1| hypothetical protein slr0208 [Synechocystis sp. PCC 6803]
 gi|1001694|dbj|BAA10431.1| slr0208 [Synechocystis sp. PCC 6803]
          Length = 259

 Score = 43.5 bits (100), Expect = 0.046,   Method: Composition-based stats.
 Identities = 15/267 (5%), Positives = 56/267 (20%), Gaps = 31/267 (11%)

Query: 41  RIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
            +  T+    + + ++   +   +L        +I + + I       E ++        
Sbjct: 2   SVVLTVGDRQVREDELYPLMVEYQLL--PHLAREILLDQAIAHIQLTPEEQQ-------- 51

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                     +N  L  +      ++Q             Q     +             
Sbjct: 52  ----------QNLALFYQQTQITNEEQRQAWLKQSGMTLEQLETSILRTARLEKFKHQTW 101

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            +            + + +   +         +               +           
Sbjct: 102 DDQLEGHFLNSKDKLDQVIYSLIRSRDSGIVQE----------LYFRIQEGEGDFSALAR 151

Query: 221 KFASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
           +++      + G    +  +       Q L          P    +    + +       
Sbjct: 152 QYSEGPEAQNGGLIGPVELNVPHPQIVQLLKSTPAGKLCLPIAVGEWWILLRLEKYISSQ 211

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVK 306
            +  ++  L      T + +     ++
Sbjct: 212 LDDNIRQRLRNDLFQTWLSQQIQTKIQ 238


>gi|119357640|ref|YP_912284.1| hypothetical protein Cpha266_1844 [Chlorobium phaeobacteroides DSM
           266]
 gi|119354989|gb|ABL65860.1| conserved hypothetical protein [Chlorobium phaeobacteroides DSM
           266]
          Length = 237

 Score = 43.5 bits (100), Expect = 0.046,   Method: Composition-based stats.
 Identities = 15/121 (12%), Positives = 35/121 (28%), Gaps = 4/121 (3%)

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ 245
                + ++    ++     E          +   +F+      S G+   +    L+P 
Sbjct: 119 VFFMLRNKDHELTRELFFRLESGEDSFE---SLASRFSEGRESTSGGRVGPVEMKQLNPA 175

Query: 246 FQNLLKKSQNNTTNPYVTQKGV-EYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
               L  ++    NP +   G    I + +K     +  LK  L        ++     +
Sbjct: 176 LARFLSTAKAGVVNPPIVLDGFGVIILLQEKIPAKLDEGLKPTLVNHLFQEWVQAEIKAF 235

Query: 305 V 305
            
Sbjct: 236 F 236


>gi|257066458|ref|YP_003152714.1| hypothetical protein Apre_0965 [Anaerococcus prevotii DSM 20548]
 gi|256798338|gb|ACV28993.1| hypothetical protein Apre_0965 [Anaerococcus prevotii DSM 20548]
          Length = 308

 Score = 43.5 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 31/317 (9%), Positives = 83/317 (26%), Gaps = 10/317 (3%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +    +   K+L T F+L                +S I  +++G+ I+  D+  + 
Sbjct: 1   MKQTIKNLKTKTSKILLTAFLLFATLT---SCNSKDRTTSNIIASVDGKTIS-SDLYSKE 56

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
                   +    +  ++          +I +  +                N     ++ 
Sbjct: 57  LRFYQAYYSKVYGESYLENKSKNGKTNDQILRDELVDSMIKDQVMKKDLESNNIKLDDNG 116

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
           S+ L        + +  L    +     +N       N  +        +K   V++  +
Sbjct: 117 SNSLKNNLSDKLNGEDSLKANILALGFNENSINDILYNDSIRKAHFDLYLKKNKVQDKDV 176

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
                   +     +  V     +     ++      K  K     +  +          
Sbjct: 177 VDFYNKDKNLHRLYKYNVLVFDDENVAKNIKDKITDAKSFKSFLNKNARNYSIINSDFVY 236

Query: 241 DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH 300
                      K ++  +N +  +     + I            +  L  +     I+  
Sbjct: 237 INDQLLLESKVKEKDEISNIFEHKGKYCILMIN------SYNENENDLLLKAKDIYIKNS 290

Query: 301 EAEYVKKLRSNAIIHYY 317
             +Y+ +L   + I  +
Sbjct: 291 YYDYLNRLIKESKIKVF 307


>gi|219122864|ref|XP_002181757.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407033|gb|EEC46971.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 115

 Score = 43.1 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 5/80 (6%), Positives = 16/80 (20%), Gaps = 1/80 (1%)

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK 252
           +      +  +    +              +      + G   +     +   F+     
Sbjct: 33  EQARQELESYQHRIIAEGLDEAFPKYATSRSDCGSFSNQGDLGFFGPGQMQRPFEEAAFA 92

Query: 253 -SQNNTTNPYVTQKGVEYIA 271
                 +    +  GV  I 
Sbjct: 93  LQPGEMSGIVSSDSGVHLIY 112


>gi|122064921|sp|P0C2B5|PRSA_LACLC RecName: Full=Foldase protein prsA; AltName: Full=Protease
           maturation protein prtM; Flags: Precursor
 gi|432402|gb|AAA03532.1| maturation protein [Lactococcus lactis]
 gi|623055|gb|AAA60395.1| proteinase activation protein [Lactococcus lactis]
          Length = 299

 Score = 43.1 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 88/286 (30%), Gaps = 36/286 (12%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K+     +      + ++S      + +   T +G  +T+  + K +             
Sbjct: 4   KMRLKVLLASTATALLLLSGCQSNQTDQTVATYSGGKVTESSLYKELK-------QSPTT 56

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           K  +  +++         K   +  + TVN  +  + +  G   E+F +FL + G   + 
Sbjct: 57  KTMLANMLIYRALNHAYGK---SVSTKTVNDAYDSYKQQYG---ENFDAFLSQNGFSRSS 110

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
           FK+ L    +    +K     K    +++              +  ++ +L S  D   Q
Sbjct: 111 FKESLRTNFLSEVALKKL--KKVSESQLKAAWKTY------QPKVTVQHILTSDEDTAKQ 162

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQY-LLESDLHPQFQNLLK 251
               +                     +  +       + GK  + L    L   F++   
Sbjct: 163 VISDLAA-----------GKDFAMLAKTDSIDTATKDNGGKISFELNNKTLDATFKDAAY 211

Query: 252 K-SQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT 295
           K    + T  P     G E I + +    G   + K  L+A     
Sbjct: 212 KLKNGDYTQTPVKVTDGYEVIKMINHPAKGTFTSSKKALTASVYAK 257


>gi|313681990|ref|YP_004059728.1| hypothetical protein Sulku_0862 [Sulfuricurvum kujiense DSM 16994]
 gi|313154850|gb|ADR33528.1| hypothetical protein Sulku_0862 [Sulfuricurvum kujiense DSM 16994]
          Length = 488

 Score = 43.1 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 19/164 (11%), Positives = 51/164 (31%), Gaps = 19/164 (11%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI- 60
             +    L   I + T  F+   F      +Y   A +      +    IT  ++ K   
Sbjct: 5   MQRHRKYLVITIWISTIAFIGAGFVGWGQYNYGDKAGA---VAKVGDISITSAELQKSYS 61

Query: 61  ------------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
                          + Q     L++ A+++L+ + L        G+T     +      
Sbjct: 62  NLFNQYNQLFQGKFDEKQAQQFGLQRQALRQLVNQALVLNLANSYGLTVTDQELWDVIKS 121

Query: 109 HARNTGLSAEDFSSFLD---KQGIGDNHFKQYLAIQSIWPDVVK 149
            +  +     D S++ +   +  +    +++ +  + +    + 
Sbjct: 122 QSAFSKDGTFDKSTYAEVLKQNRLTIKEYEESMKKELLIQKTLY 165


>gi|158336319|ref|YP_001517493.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Acaryochloris marina MBIC11017]
 gi|158306560|gb|ABW28177.1| PpiC-type peptidyl-prolyl cis-trans isomerase domain containing
           protein [Acaryochloris marina MBIC11017]
          Length = 250

 Score = 43.1 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 24/244 (9%), Positives = 65/244 (26%), Gaps = 37/244 (15%)

Query: 64  KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
           + Q +   L+++ + ++I +     E  +     +     Y   + AR          + 
Sbjct: 23  QYQLLPQLLKELIIDQVIQDVQLSSE--EVVQAVEQFYRQYQIGEEARREAWLTHYRMTP 80

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                      K Y      W + V++DF+ + G  +  + +  +       +E   R  
Sbjct: 81  QQLAAQAQRQMKLYKFKLQTWNNQVESDFLQQKGQFDQYVYSLIRVASAEVAQELYFR-- 138

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL- 242
                                    +       +   K++      + G    +  ++L 
Sbjct: 139 ------------------------LQAGEQAFADLATKYSQGPEAQTGGLIGPVTAANLH 174

Query: 243 HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEA 302
               Q L          P    +    +++        +               +E+   
Sbjct: 175 PTLVQILTSAQPGQVRPPIRLGEWFVIVSLQKLISAQLDAP--------LRQQLLEQRFN 226

Query: 303 EYVK 306
           E+++
Sbjct: 227 EWLQ 230


>gi|87301645|ref|ZP_01084485.1| hypothetical protein WH5701_03184 [Synechococcus sp. WH 5701]
 gi|87283862|gb|EAQ75816.1| hypothetical protein WH5701_03184 [Synechococcus sp. WH 5701]
          Length = 249

 Score = 43.1 bits (99), Expect = 0.048,   Method: Composition-based stats.
 Identities = 10/155 (6%), Positives = 39/155 (25%), Gaps = 1/155 (0%)

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
           +           ++  ++     +L R          L          +       +   
Sbjct: 85  QIQQPLKLRHHCQEHFRHKAETHFLSRKNHLDRVVYSLLRVQDPFLARELYLRIAGQEAS 144

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYIAIC 273
             +    F++ +   + G    +  +       + L          P++ +     + + 
Sbjct: 145 FADLAAAFSTGVEKHTKGLVGPVPLTQAHPALAERLRVSRPGLLQEPFLLEGFWLILRLE 204

Query: 274 DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
                  E A    ++ +     +++  +  +  L
Sbjct: 205 SYHPASFEEATADQMALELFEQWVKEETSRKLAAL 239


>gi|238855146|ref|ZP_04645468.1| foldase protein PrsA [Lactobacillus jensenii 269-3]
 gi|282932559|ref|ZP_06337981.1| foldase protein PrsA [Lactobacillus jensenii 208-1]
 gi|313473154|ref|ZP_07813638.1| foldase protein PrsA [Lactobacillus jensenii 1153]
 gi|238832227|gb|EEQ24542.1| foldase protein PrsA [Lactobacillus jensenii 269-3]
 gi|239528600|gb|EEQ67601.1| foldase protein PrsA [Lactobacillus jensenii 1153]
 gi|281303307|gb|EFA95487.1| foldase protein PrsA [Lactobacillus jensenii 208-1]
          Length = 304

 Score = 43.1 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 34/274 (12%), Positives = 74/274 (27%), Gaps = 39/274 (14%)

Query: 48  GEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
           G  IT  +  K +        + +  K  +  +I+    KQ+  K       +     + 
Sbjct: 35  GGKITQDEYYKELK-------SSQAGKSTLANMIIYRALKQQYGKKVTQKQVDKEYNAYK 87

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
           +   ++  SA + + +       +                + +    K            
Sbjct: 88  KQYGSSFESALEQNGYTTSSFKKNIETNLLTVAALKDIKKITSKQEQKAWKS-------- 139

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKI 226
                    +  ++ +L              +   +D  +            +K++    
Sbjct: 140 ------YQPKVTVQHIL-----------VSKKSTAEDVIKQLKSGTSFATLAKKYSIDSA 182

Query: 227 HDVSIGKAQYLLESD--LHPQFQNLLKKSQNN--TTNPYVTQKGVEYIAICDKRDLGGEI 282
                GK      +D  L   F+    K +N   TT P  TQ G E I +      G   
Sbjct: 183 TKNKGGKLTAFDSTDTTLDSDFKTAAFKLKNGEYTTTPVKTQSGYEIIKMIKHPSKGKFS 242

Query: 283 ALKAYLSAQNTPTKIEKHE--AEYVKKLRSNAII 314
             K  +  Q   +  +        ++ +   + I
Sbjct: 243 DHKKEIDEQIYQSMEQDTTTMQSVIRTVLKKSDI 276


>gi|325295071|ref|YP_004281585.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065519|gb|ADY73526.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 182

 Score = 43.1 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 4/88 (4%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ----KINGELEKIAV 77
           L+    +  V+  +   S +I   +NG+ IT+  + + +  L  +    K N + +   +
Sbjct: 4   LLFSLSMVAVTSLTAQGSDKILAKVNGKPITESQLEEVLKGLPAKYNSVKNNPQFQSQVL 63

Query: 78  QELIVETLKKQEIEKSGITFDSNTVNYF 105
             LI + L  QE +K GI  ++      
Sbjct: 64  NSLINQELLYQEAKKEGIEKNAKVQRQI 91


>gi|198276170|ref|ZP_03208701.1| hypothetical protein BACPLE_02359 [Bacteroides plebeius DSM 17135]
 gi|198270982|gb|EDY95252.1| hypothetical protein BACPLE_02359 [Bacteroides plebeius DSM 17135]
          Length = 423

 Score = 43.1 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 62/182 (34%), Gaps = 5/182 (2%)

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
                 +++ Q    + +S E F        +     K+          +  +    +  
Sbjct: 25  SVEEFEHYYTQVYAVSRVSVEQFLPHFLYYKLKVADAKRQSWDTITDFRLQCSALQNEIL 84

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E        + ++  +     R + F +P +    Q  V ++  D+  + L+      
Sbjct: 85  KSE---KRGVPQKQDTLLNWVRFRQISFLLPQHASSEQERVARQRIDSVYTALKNGIPFE 141

Query: 218 KLEK-FASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDK 275
           KL + +   +        +++ E  L  +F + L    + N + P+ +  G+  + + D+
Sbjct: 142 KLAQPYIKNLLPSPYLDGEWIPERCLIKEFTEQLSTLKKGNYSAPFFSPLGIHIVYLLDR 201

Query: 276 RD 277
           R 
Sbjct: 202 RQ 203


>gi|332712099|ref|ZP_08432027.1| hypothetical protein LYNGBM3L_71240 [Lyngbya majuscula 3L]
 gi|332348905|gb|EGJ28517.1| hypothetical protein LYNGBM3L_71240 [Lyngbya majuscula 3L]
          Length = 252

 Score = 43.1 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 20/238 (8%), Positives = 53/238 (22%), Gaps = 4/238 (1%)

Query: 66  QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
                   +  +  L  E   K   +K       N              + A+       
Sbjct: 4   LSKASVTPEEIMYSLKKEMHLKGICQKVLYQRVINKAAQERGITVTPEDVQAQADEIRYA 63

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
            +         +LA Q +  +  +     +    ++      + ++    +  L    + 
Sbjct: 64  NRLEKAAETLAWLADQMVTAEDWEAGISDRLLAQKLAESLFYKDVEKSFAQNRLDFEQVL 123

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ 245
                        Q+     EE  +   +  +  +    +      G    L      P+
Sbjct: 124 VYQILVDSE-EIAQELFYQIEEGEISFYEAAHFYDIDPERQRRC--GYEGKLPRWSFKPE 180

Query: 246 FQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEA 302
               +        T+P  T++G     + +             +        +     
Sbjct: 181 IAALIFSVQPGEVTHPLQTEQGYHLFLVEEFIPAELTEEKSKEILQSMFQEWLNSEVN 238


>gi|229552580|ref|ZP_04441305.1| peptidylprolyl isomerase [Lactobacillus rhamnosus LMS2-1]
 gi|258508775|ref|YP_003171526.1| peptidylprolyl cis-trans isomerase PrsA1 [Lactobacillus rhamnosus
           GG]
 gi|258539953|ref|YP_003174452.1| peptidylprolyl cis-trans isomerase PrsA1 [Lactobacillus rhamnosus
           Lc 705]
 gi|229314132|gb|EEN80105.1| peptidylprolyl isomerase [Lactobacillus rhamnosus LMS2-1]
 gi|257148702|emb|CAR87675.1| Peptidylprolyl cis-trans isomerase PrsA1 [Lactobacillus rhamnosus
           GG]
 gi|257151629|emb|CAR90601.1| Peptidylprolyl cis-trans isomerase PrsA1 [Lactobacillus rhamnosus
           Lc 705]
 gi|259650081|dbj|BAI42243.1| peptidylprolyl isomerase [Lactobacillus rhamnosus GG]
          Length = 300

 Score = 43.1 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 76/299 (25%), Gaps = 35/299 (11%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           I+  +   V+      SS     + G  +T  +    +             +  ++ +IV
Sbjct: 5   ILGVVGLFVAVTLAGCSSSTVANMKGAKVTKDEYYDAMK-------KTTTGQATLRNMIV 57

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
               +Q+          N                 + + S  D     + + +     Q 
Sbjct: 58  LKALEQQYPNKVSDKKVN----------SQFNKLKKQYGSSFDSTLEQNGYTESSFKDQI 107

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
                 +            +I +  +K +               +    ++ +   ++ I
Sbjct: 108 RTTLYSEVALKDMKKPTTKQIESQWKKYQPKIQ-----------VQHILVKTEDEAKQII 156

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL--LESDLHPQFQNLLKK--SQNNTT 258
            D ++       +    +           GK       ++ L   F++   K     + T
Sbjct: 157 SDYQKDPTEKNFESLAKKNSIDTGTKNKGGKLAAFDNTDTSLDSTFKSAAFKLKKAGDIT 216

Query: 259 N-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP--TKIEKHEAEYVKKLRSNAII 314
             P  TQ G   I +      G     K  L  Q               + K+   A +
Sbjct: 217 TTPVKTQYGYHVIRVISIAKKGTMKEHKKDLEKQIYTSWQSDSTVMNGIITKVLKKANV 275


>gi|218960353|ref|YP_001740128.1| hypothetical protein; putative signal peptide [Candidatus
           Cloacamonas acidaminovorans]
 gi|167729010|emb|CAO79921.1| hypothetical protein; putative signal peptide [Candidatus
           Cloacamonas acidaminovorans]
          Length = 266

 Score = 43.1 bits (99), Expect = 0.051,   Method: Composition-based stats.
 Identities = 20/258 (7%), Positives = 77/258 (29%), Gaps = 14/258 (5%)

Query: 64  KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
           K ++    L ++  + L ++  K     +            +              ++  
Sbjct: 19  KKEEKGIALAQVDKEILYLDDFKSTFSVEDWENLSPEIRKKYIEDWV--NLTLLAHYADK 76

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                      K   A + +  + +    + +    E ++    +  +    +  +   +
Sbjct: 77  QGLNKDQAVKQKINYASKKVKANALIAKRLSEIEVSEDQLFNYFRLHQAEFQKNAVEYNI 136

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
                 +K+  +  +Q+          +       +++++++      G    +  +   
Sbjct: 137 RRIALMDKISAENVLQQ--------LSQGMSFTEAVQRYSTEELKNRGGFMGMVSATGTD 188

Query: 244 PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKH 300
             F    ++ + N       +       + + +           +A +  +    K ++ 
Sbjct: 189 SLFWLKARELKENEYGLVYKEPMWYVFQVVESKITPQEANFEDYRAEIKRKVLLEKQDQV 248

Query: 301 EAEYVKKLRSN-AIIHYY 317
             E +K+++S  + I+YY
Sbjct: 249 YQELIKEIKSQTSEIYYY 266


>gi|239941819|ref|ZP_04693756.1| putative lipoprotein [Streptomyces roseosporus NRRL 15998]
 gi|239988279|ref|ZP_04708943.1| putative lipoprotein [Streptomyces roseosporus NRRL 11379]
 gi|291445266|ref|ZP_06584656.1| lipoprotein [Streptomyces roseosporus NRRL 15998]
 gi|291348213|gb|EFE75117.1| lipoprotein [Streptomyces roseosporus NRRL 15998]
          Length = 217

 Score = 43.1 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 17/148 (11%), Positives = 45/148 (30%), Gaps = 11/148 (7%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQ------- 66
           +      +       P++S             + GE I    + +R A ++         
Sbjct: 5   RRTALTVLAATLVAAPLLSACGNQAHPGAAAVVGGERIEVSAVQERAAEVRAAQESSPQA 64

Query: 67  ----KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
                 +G+L +  +  LI   +  +  E +G+T     +           G   +  + 
Sbjct: 65  AQLVNKSGQLNRAKLHGLIFGRILDRAAEDAGVTVSRKEIQEMRQAGLAQQGGEEQFEAM 124

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
            L ++ +  +     +  +   P + + 
Sbjct: 125 MLQQRWVAPDQIDADMRQEVQLPKLARA 152


>gi|260665523|ref|ZP_05866369.1| protease maturation protein [Lactobacillus jensenii SJ-7A-US]
 gi|260560644|gb|EEX26622.1| protease maturation protein [Lactobacillus jensenii SJ-7A-US]
          Length = 304

 Score = 43.1 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 39/274 (14%)

Query: 48  GEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
           G  IT  +  K +        + +  K  +  +I+    KQ+  K       +     + 
Sbjct: 35  GGKITQDEYYKELK-------SSQAGKSTLANMIIYRALKQQYGKKVTQKQVDKEYNAYK 87

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
                       F S L++ G   + FK+ +    +    +K            +I    
Sbjct: 88  ------KQYGSSFESALEQNGYTTSSFKKNIKTNLLTVAALK------------DIKKIT 129

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKI 226
            K +    + Y  +  +  I  +K      V        +            +K++    
Sbjct: 130 SKQEQKAWKSYQPKVTVQHILVSKKSTAEDV-------IKQLKSGTSFATLAKKYSIDSA 182

Query: 227 HDVSIGKAQYLLESD--LHPQFQNLLKKSQNN--TTNPYVTQKGVEYIAICDKRDLGGEI 282
                GK      +D  L   F+    K +N   TT P  TQ G E I +      G   
Sbjct: 183 TKNKGGKLTAFDSTDTTLDSDFKTAAFKLKNGEYTTTPVKTQSGYEIIKMIKHPSKGKFS 242

Query: 283 ALKAYLSAQNTPTKIEKHE--AEYVKKLRSNAII 314
             K  +  Q   +  +        ++ +   + I
Sbjct: 243 DHKKEIDEQIYQSMEQDTTTMQSVIRTVLKKSDI 276


>gi|77407178|ref|ZP_00784161.1| rotamase family protein [Streptococcus agalactiae H36B]
 gi|77174213|gb|EAO77099.1| rotamase family protein [Streptococcus agalactiae H36B]
          Length = 295

 Score = 43.1 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 37/297 (12%), Positives = 76/297 (25%), Gaps = 30/297 (10%)

Query: 25  FCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVET 84
             +  + +      +     T+ G+ IT  D   ++             K A Q ++   
Sbjct: 1   MSVATLAACSGKTSNGTNVVTMKGDTITVSDFYDQVK----------TSKAAQQSMLTLI 50

Query: 85  LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
           L +    + G       V+  + + A+  G S                   +    Q   
Sbjct: 51  LSRVFDTQYGDKVSDKKVSEAYNKTAKGYGNSFSSAL-------SQAGLTPEGYKQQIRT 103

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
             +V+            E             + Y   T +  I  +       V K +K 
Sbjct: 104 TMLVEYAVKEAAKKELTEA------NYKEAYKNYTPETSVQVIKLDAEDKAKSVLKDVKA 157

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQ 264
                 ++ K+         +    S G    L +  +   F+       +  +    T 
Sbjct: 158 DGADFAKIAKEKTTATDKKVEYKFDSAG--TTLPKEVMSAAFKLDKNGVSDVVSTVDSTT 215

Query: 265 K--GVEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEKHE--AEYVKKLRSNAIIHY 316
                  I + DK +   +  + K  L       K        + + K    A +  
Sbjct: 216 YKTSYYIIKVTDKTEKKSDWKSYKNRLKEVILKDKTSDRAFQNKVISKALEKANVKI 272


>gi|256847527|ref|ZP_05552973.1| peptidylprolyl isomerase [Lactobacillus coleohominis 101-4-CHN]
 gi|256716191|gb|EEU31166.1| peptidylprolyl isomerase [Lactobacillus coleohominis 101-4-CHN]
          Length = 307

 Score = 43.1 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 29/282 (10%), Positives = 72/282 (25%), Gaps = 26/282 (9%)

Query: 36  WAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGI 95
            A  ++   T +G  IT  +    +             K  +Q++I++ + +++  K   
Sbjct: 5   AACGNKAVATTSGGKITQDEYYSSMKNTSQ-------GKAVLQQMILDKVLQKQYGKEVS 57

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
             D N     +     ++  +     +  +K              Q     +++      
Sbjct: 58  KADVNKEYNSYKSQYGSSFSAVLQQQNLTEK----------TFKDQIKSRLLLEAAVRHY 107

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
                  I    +K +       +       +           Q       + +      
Sbjct: 108 STFSNKAINKQWKKYEPKVETAEI------LVGSEDDAKDIISQLDSTSGNKYKKFKKLA 161

Query: 216 CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT-NPYVTQKGVEYIAICD 274
            +K    ++K     +        S      +          T  P  T  G + I +  
Sbjct: 162 KSKSTDTSNKSTGGIVPAFDNTSTSVDSAYKKAAFALKTGEYTKEPVKTDNGYQVIYMVK 221

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHE--AEYVKKLRSNAII 314
               G + A  A L  +     +       + + K+     +
Sbjct: 222 HPAKGAKSAHIADLKTKIVQQNMNNQSFMEKVISKVLKKGNV 263


>gi|88704442|ref|ZP_01102156.1| conserved hypothetical protein [Congregibacter litoralis KT71]
 gi|88701493|gb|EAQ98598.1| conserved hypothetical protein [Congregibacter litoralis KT71]
          Length = 263

 Score = 43.1 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 28/266 (10%), Positives = 57/266 (21%), Gaps = 26/266 (9%)

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
           A L L   +   E I V     E L             +  +      + R    + E  
Sbjct: 5   AYLSLNDQDSSNEDIVVSVAQQEQLIAAYTRVWRRPPKALELKGLLDDYIREEIANREAL 64

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
           +              +      +        F       E E+    +        +   
Sbjct: 65  ALGFAANDPVVRRRLRQKYESFMDQ------FAASVEPSEDELQQWYETRMTDYSEDARY 118

Query: 181 RTVLFSIPDNKLQNQ--------GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
                    ++ ++           +     +A+ +         + E           G
Sbjct: 119 SLRHRFFSSDRREDARGDAASALAGLAPADPEADPALGDALAMPQRYEDTRETELASRFG 178

Query: 233 KAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSA 290
           +      S L               + P  +  G   + I     R      A++A +  
Sbjct: 179 QGFTDSLSALPE----------GRWSGPVPSAYGYHLVFIESVRARAQPPLGAVRAAVLR 228

Query: 291 QNTPTKIEKHEAEYVKKLRSNAIIHY 316
                 +EK   E    L     +  
Sbjct: 229 DWRAEHVEKAREELYASLLDRYTVKI 254


>gi|323466514|gb|ADX70201.1| Protease maturation protein [Lactobacillus helveticus H10]
          Length = 301

 Score = 43.1 bits (99), Expect = 0.054,   Method: Composition-based stats.
 Identities = 29/285 (10%), Positives = 72/285 (25%), Gaps = 37/285 (12%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +  +     F +   ++  S + ++ +      + +T  +  K I             K 
Sbjct: 5   VKVFLTSSAFLLAFSLTGCSKSNNTEVAQYGKNKKVTQEEFYKAIKTSPSS-------KT 57

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  L++     ++  K   +   N          +      E +          + +  
Sbjct: 58  ILANLLIYDALNEQYGKKLSSKAVN----------QEYNNYKERYGDQFASFLSQNGYTT 107

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
                      + K     +    + ++                ++ +L +  +      
Sbjct: 108 TSFRRMIKINLLSKIALKAQIKPTDKQLKKEW----KTYSPSVTVQHILTTDKNTANT-- 161

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLES--DLHPQFQNLLKK 252
                      +         +  +K++       + GK     +    L   F++   K
Sbjct: 162 ---------VIQKLNNGTSFASLAQKYSVDSSSSSNGGKIAAFNKDNKQLDSSFKDTAYK 212

Query: 253 SQNN--TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT 295
            +N   TT P  T  G E I +      G     K  L       
Sbjct: 213 LKNGEYTTTPVKTTNGYEIIKMIKHPAKGNFEENKQDLINNLYDK 257


>gi|296134356|ref|YP_003641603.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermincola sp. JR]
 gi|296032934|gb|ADG83702.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermincola potens
           JR]
          Length = 183

 Score = 43.1 bits (99), Expect = 0.057,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 56/162 (34%), Gaps = 10/162 (6%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL----- 63
           +S   K      + +I  +  +V       SS    T+NG  I+  + +K+  ++     
Sbjct: 1   MSGKRKTYIFALLGLIILVSIVVFLTKSNGSSDKVATVNGVSISKQEFNKQYKMILSYYE 60

Query: 64  -----KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
                   K    L++  +  L+ + +  QE +K  I      VN +  Q  +      +
Sbjct: 61  TIARKLSDKEKKGLQEEVLARLVDKAIILQEAQKRNIVVTDEEVNKYISQKFKGNKKLQD 120

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
           ++               +Y   +    D+V  ++  +   ++
Sbjct: 121 EYLKERSLTLKDYKEVVRYQKTREKLYDIVTKNYKYEDKPIQ 162


>gi|295114096|emb|CBL32733.1| PPIC-type PPIASE domain. [Enterococcus sp. 7L76]
          Length = 342

 Score = 43.1 bits (99), Expect = 0.057,   Method: Composition-based stats.
 Identities = 24/313 (7%), Positives = 77/313 (24%), Gaps = 41/313 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +L     + + S  + +  S+   T+ G  IT  D   +I             + 
Sbjct: 1   MKKKLILAAAGAMAVFSLAACSSGSKDIATMKGSTITVDDFYNQIK-------EQSTSQQ 53

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           A  ++++  + +++             +    +   +     E                +
Sbjct: 54  AFSQMVIYKVFEEKYGD-------KVTDKAIQKKFDDAKKQVEAQGGKFSDALTQAGLTE 106

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    Q    + ++          + ++             + +               Q
Sbjct: 107 KSFKKQLKQAEAMQVGLKDHLKITDEDLKTAWASFHPEVEAQII---------------Q 151

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESDLHPQF--QNLLKK 252
              +   K  ++            +  +         GK ++  +S   P    +   K 
Sbjct: 152 VASEDDAKAVKKEITDGGDFAKIAKDKSTDAATKKDGGKIKFDSQSTTVPAEVKEAAFKL 211

Query: 253 SQNNTTNPYVTQKG------VEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEK--HEAE 303
                + P               + +   +  G +    +  +      TK+     +++
Sbjct: 212 KDGEVSEPIAATNAQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKIAEDTKLADPTFQSK 271

Query: 304 YVKKLRSNAIIHY 316
            +      A +  
Sbjct: 272 VISDELKAANVKI 284


>gi|257080935|ref|ZP_05575296.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis E1Sol]
 gi|256988965|gb|EEU76267.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis E1Sol]
          Length = 342

 Score = 43.1 bits (99), Expect = 0.058,   Method: Composition-based stats.
 Identities = 24/313 (7%), Positives = 78/313 (24%), Gaps = 41/313 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +L     + + S  + +  S+   T+ G  IT  D   +I             + 
Sbjct: 1   MKKKLILAAAGAMAVFSLAACSSGSKDIATMKGSTITVDDFYNQIK-------EQSTSQQ 53

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           A  ++++  + +++             +    +   +     E                +
Sbjct: 54  AFSQMVIYKVFEEKYGD-------KVTDKAIQKKFDDAKKQVEAQGGKFSDALTQAGLTE 106

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    Q    + ++          + ++             + +               Q
Sbjct: 107 KSFKKQLKQAEAMQVGLKDHLKITDEDLKTAWASFHPEVEAQII---------------Q 151

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQF--QNLLKK 252
              +   K  ++            +  ++        GK ++  +S   P    +   K 
Sbjct: 152 VASEDDAKAVKKEITDGGDFAKIAKDKSTDTATKKDGGKIKFDSQSTTVPAEVKEAAFKL 211

Query: 253 SQNNTTNPYVTQKG------VEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEK--HEAE 303
                + P               + +   +  G +    +  +      TK+     +++
Sbjct: 212 KDGEVSEPIAATNAQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKIAEDTKLADPTFQSK 271

Query: 304 YVKKLRSNAIIHY 316
            +      A +  
Sbjct: 272 VISDELKAANVKI 284


>gi|54113793|gb|AAV29530.1| NT02FT0767 [synthetic construct]
          Length = 476

 Score = 43.1 bits (99), Expect = 0.059,   Method: Composition-based stats.
 Identities = 14/165 (8%), Positives = 41/165 (24%), Gaps = 6/165 (3%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M       L      +    +  IF I  +  + +   S      +    I+     +  
Sbjct: 1   MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSRAYVAKVGDNEISSQQFQQYA 60

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
                     E ++  + ++I + L   + ++  I      +      +        +  
Sbjct: 61  Q----SATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAIFTNPMFF--DKDGK 114

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
            S    + +           Q +  ++          +  + I  
Sbjct: 115 FSAEKLKQVVAYLGGMDKLEQILAQNIQATIIPKTIVDTSIVIDY 159


>gi|72383061|ref|YP_292416.1| hypothetical protein PMN2A_1223 [Prochlorococcus marinus str.
           NATL2A]
 gi|72002911|gb|AAZ58713.1| conserved hypothetical protein [Prochlorococcus marinus str.
           NATL2A]
          Length = 248

 Score = 43.1 bits (99), Expect = 0.059,   Method: Composition-based stats.
 Identities = 18/202 (8%), Positives = 46/202 (22%), Gaps = 1/202 (0%)

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
           +            L+ +   +               +   D              + +  
Sbjct: 36  KIYIDEKRKEELILEFKKQQNIIEDDKYKNFLNINHLNDYDVEDIALGKTRIYEYSLKNF 95

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS 230
            +     +L R     I    L          +       +     +   +F+  I   +
Sbjct: 96  GHKIESWFLERKSQLDIIVYSLIRVSDPFIARELYLRILSKETDIGDLATEFSEGIEKKT 155

Query: 231 IGKAQYLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS 289
            G    +   + HP   N            P         I + +      +  +K  + 
Sbjct: 156 RGIVGPISIGNSHPSLANFLQNCEIGKVQPPLKINNSFLIIRVENFEPAKLDEDMKKNMG 215

Query: 290 AQNTPTKIEKHEAEYVKKLRSN 311
            +     ++    + ++KL  N
Sbjct: 216 EELLNKWLDIQADDMIEKLIKN 237


>gi|322385853|ref|ZP_08059496.1| peptidyl-prolyl cis-trans isomerase [Streptococcus cristatus ATCC
           51100]
 gi|321270138|gb|EFX53055.1| peptidyl-prolyl cis-trans isomerase [Streptococcus cristatus ATCC
           51100]
          Length = 376

 Score = 43.1 bits (99), Expect = 0.060,   Method: Composition-based stats.
 Identities = 28/299 (9%), Positives = 76/299 (25%), Gaps = 40/299 (13%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K       + +F +V + +    A    I  T+ GE IT  +   ++        N   
Sbjct: 19  MKKKILTGAVTLFSVVALAACSQTAKDKDIV-TMKGETITVSEFYDQVK-------NNGS 70

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            +  + ++ ++ + +++  K     +             +   +    S   +       
Sbjct: 71  SQQVLLQMAIKQVFEEKYGKKVTDKEVEEAFEKMKSAYGSAFQNVLAQSGMTED------ 124

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                   Q     +V+          E E+  +  K    T    +   ++    + K 
Sbjct: 125 ----AYRDQIRANKLVEYAVK---KAAEKELTDDNYKAFFETYTPEVTAQIIKVDSEEKA 177

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQF--QNL 249
           +      K                   ++ ++        G+ ++   S        +  
Sbjct: 178 KEVLEKAKA---------EGADFGQLAKENSTDKDTKDKGGEVKFDSTSTTVADAVKKAT 228

Query: 250 LKKSQNNTTNPYVTQK------GVEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEKHE 301
               +N  ++    +           + +  K     +    K  L       K     
Sbjct: 229 FALEENGVSDVITVRGKQNYSASYYIVKLVKKTQKSAKWTDYKKQLKEGILTQKQNDAS 287


>gi|158605272|gb|ABW74882.1| conserved hypothetical protein [Sphingomonas sp. ATCC 53159]
          Length = 290

 Score = 43.1 bits (99), Expect = 0.060,   Method: Composition-based stats.
 Identities = 26/282 (9%), Positives = 73/282 (25%), Gaps = 48/282 (17%)

Query: 41  RIRTTINGEVITDGDISKRIA--LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFD 98
           ++  +++GE IT  +++  +    +         E++A+Q +I   +  +   +  +   
Sbjct: 31  QVVASVDGEEITVFELNAELQASQVPPGTDRKLAEQLALQRIIERKILAKVAREQKLDKT 90

Query: 99  SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY-G 157
              +                                    A + I   ++++        
Sbjct: 91  PAFLIQE-------------------------------RRADELILTAMLRDKIAGGIAQ 119

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             + EI   +        +  +               +      +K  ++   +L  D  
Sbjct: 120 PTDAEIEKYQAAHPERFAQRKIYAIDQVVFAPPSSAAKLKQFAPLKTLDQLTAKLSADNV 179

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
           +  +  S+           +  + L P+    +            TQ+G+    I     
Sbjct: 180 QFRRAPSQ-----------IDTAALPPEIAAKIASLPAQEMFILPTQQGLTANIITSTTV 228

Query: 278 LGGEIALKAYLSAQ-NTPTKIEKHEAEYVKKLRSNA--IIHY 316
           L         ++       +  K     +      A   + Y
Sbjct: 229 LPVPADQAREIALSGLRTERFGKAADAQLNDRLKKARETVKY 270


>gi|20806943|ref|NP_622114.1| hypothetical protein TTE0434 [Thermoanaerobacter tengcongensis MB4]
 gi|20515421|gb|AAM23718.1| hypothetical protein TTE0434 [Thermoanaerobacter tengcongensis MB4]
          Length = 241

 Score = 43.1 bits (99), Expect = 0.060,   Method: Composition-based stats.
 Identities = 17/155 (10%), Positives = 45/155 (29%), Gaps = 9/155 (5%)

Query: 38  MSSRIRTTINGEVITDGDISKRIAL-LKLQKINGELEKIAVQELIVETLKKQEIEKSGIT 96
               I   +NG  I   +   R  L L   +   ++    + +L+ E +K+    K  + 
Sbjct: 62  NEGDIIAEVNGIPIYKNEFELRKGLTLASDEQINDINNFVLNKLVREKVKEYLAMKYNLK 121

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL--------AIQSIWPDVV 148
              + +N +  +  +      E      +        +++Y             ++  + 
Sbjct: 122 VSEDEINSYIEKEKQQFKEFPEAEKKLKELISASGMTYEEYWNDYERYNVKRMLLFDKLY 181

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                    N E++             ++Y    +
Sbjct: 182 NAIVDEGIKNGELKKTDKMTIEVQNEYKKYFDNII 216


>gi|297537942|ref|YP_003673711.1| EpsD family peptidyl-prolyl cis-trans isomerase [Methylotenera sp.
           301]
 gi|297257289|gb|ADI29134.1| peptidyl-prolyl cis-trans isomerase, EpsD family [Methylotenera sp.
           301]
          Length = 338

 Score = 43.1 bits (99), Expect = 0.060,   Method: Composition-based stats.
 Identities = 28/287 (9%), Positives = 71/287 (24%), Gaps = 46/287 (16%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQK--INGELEKIAVQELIVETLKKQEIEK 92
                S++   +NG+ I    ++ ++A L       +    K  + +L+ + L K++  +
Sbjct: 30  PVKAESQVVAKVNGDEILIHQVNFQLARLGQLNEAQSKLAAKQILSKLVEQQLLKKQAIE 89

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
           + +  D   +                                 +    + +    ++   
Sbjct: 90  TKLDRDPTVLLAI------------------------------EASKDEILSQAYLEQLM 119

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL--QNQGFVQKRIKDAEESRL 210
           +        EI +  +    +    ++ R     I  NK          K IK   E   
Sbjct: 120 LKANKPSASEIDSFYKSHPELFENRHVFRLQELVIEVNKDKFAEVQNNLKAIKGINEIAT 179

Query: 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYI 270
            L  +       ++                 L       L+  +        T + +  +
Sbjct: 180 WLKNNNYPFSANSN-----------VRAAEQLPLDMLKKLQLLKEGEFLIVPTDRSLNVV 228

Query: 271 AICDKRDLGGE-IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            +   +            +                +  L   A I +
Sbjct: 229 HLAAIQSAPISREKAIPIIEQYFVNQNKSTLAKNEILALNEKAKIEF 275


>gi|56707753|ref|YP_169649.1| hypothetical protein FTT_0628 [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670224|ref|YP_666781.1| hypothetical protein FTF0628 [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456823|ref|ZP_03665296.1| hypothetical protein FtultM_03409 [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370257|ref|ZP_04986262.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874566|ref|ZP_05247276.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604245|emb|CAG45261.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320557|emb|CAL08644.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568500|gb|EDN34154.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840565|gb|EET19001.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158924|gb|ADA78315.1| hypothetical protein NE061598_03585 [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 476

 Score = 42.7 bits (98), Expect = 0.063,   Method: Composition-based stats.
 Identities = 14/165 (8%), Positives = 41/165 (24%), Gaps = 6/165 (3%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M       L      +    +  IF I  +  + +   S      +    I+     +  
Sbjct: 1   MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSRAYVAKVGDNEISSQQFQQYA 60

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
                     E ++  + ++I + L   + ++  I      +      +        +  
Sbjct: 61  Q----SATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAIFTNPMFF--DKDGK 114

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
            S    + +           Q +  ++          +  + I  
Sbjct: 115 FSAEKLKQVVAYLGGMDKLEQILAQNIQATIIPKTIVDTSIVIDY 159


>gi|227533717|ref|ZP_03963766.1| peptidylprolyl isomerase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|400854|sp|Q02473|PRSA_LACPA RecName: Full=Foldase protein prsA; AltName: Full=Protease
           maturation protein prtM; Flags: Precursor
 gi|149581|gb|AAA25247.1| maturation protein [Lactobacillus paracasei]
 gi|227188701|gb|EEI68768.1| peptidylprolyl isomerase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 299

 Score = 42.7 bits (98), Expect = 0.066,   Method: Composition-based stats.
 Identities = 32/286 (11%), Positives = 70/286 (24%), Gaps = 36/286 (12%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K+     +      + ++S      + +   T +G  +T+ +  K +             
Sbjct: 4   KMRLKVLLASTATALLLLSGCQSNQADQKVATYSGGKVTESNFYKELK-------QSPTT 56

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           K  +  +++         KS  T   N     + Q       +    + F          
Sbjct: 57  KTMLANMLIYRALNHAYGKSVSTKTVNDAYDSYKQQYGENFDAFLSQNGFSRSSFKESLR 116

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                 +       V    +                       +  ++ +L S  D   Q
Sbjct: 117 TNFLSEVALKKLKKVSESQLKAVWKT--------------YQPKVTVQHILTSDEDTAKQ 162

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLES-DLHPQFQNLLK 251
               +                     +  +       + GK  +   +  L   F++   
Sbjct: 163 VISDLAA-----------GKDFATLAKTDSIDTATKDNGGKISFESNNKTLDATFKDAAY 211

Query: 252 K-SQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT 295
           K    + T  P     G E I + +    G   + K  L+A     
Sbjct: 212 KLKNGDYTQTPVKVTNGYEVIKMINHPAKGTFTSSKKALTASVYAK 257


>gi|257870832|ref|ZP_05650485.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           gallinarum EG2]
 gi|257804996|gb|EEV33818.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           gallinarum EG2]
          Length = 342

 Score = 42.7 bits (98), Expect = 0.066,   Method: Composition-based stats.
 Identities = 36/312 (11%), Positives = 83/312 (26%), Gaps = 40/312 (12%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWA-MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           +    +L     + +++  + +  SS    T+ G  IT  D  +       Q    +  +
Sbjct: 1   MKKKLILAAVSALSVLTLAACSGSSSNEIATMKGGKITVEDFYE-------QAKTDQNNQ 53

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
             +++LI   + K   +K G       ++  + Q A+  G S +  S+            
Sbjct: 54  SLIRQLI---VLKVFDQKYGDDVTEKMIDKQYDQTAKQYGDSDKFESALEAS-----GLT 105

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
           K+    Q      ++          + E+ A           + +             + 
Sbjct: 106 KKSYREQIRQQLALQEGLKANMDIGDDELKAAWDSFHPEVEAQLI-------------KL 152

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL--LKK 252
                 +    E  +          EK          G  ++   S   P          
Sbjct: 153 TSEDDAKDVLKEAQKDGADFSKLAKEKSTDTATAEDGGTVKFDSTSTTVPAEVQTAAFAL 212

Query: 253 SQNNTTNPYVTQK------GVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEK--HEAE 303
                +                 + +   +D G ++   K  ++     T +      A+
Sbjct: 213 KDGEISEVISATDASTYTTSYYIVKMVKNQDKGNDMDKYKDQITEIAQNTLLNDSTFVAK 272

Query: 304 YVKKLRSNAIIH 315
            + K    A + 
Sbjct: 273 TIGKELKAANVK 284


>gi|31983504|ref|NP_858118.1| peptidylprolyl isomerase [Lactococcus lactis subsp. cremoris]
 gi|13491881|gb|AAK27980.1|AF247159_5 PrtM precursor [Lactococcus lactis subsp. cremoris]
          Length = 299

 Score = 42.7 bits (98), Expect = 0.066,   Method: Composition-based stats.
 Identities = 32/286 (11%), Positives = 72/286 (25%), Gaps = 36/286 (12%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K+     +      + ++S      + +   T +G  +T+    K +             
Sbjct: 4   KMRLKVLLASTATALLLLSGCQSNQTDQTVATYSGGKVTESSFYKELK-------QSPTT 56

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           K  +  +++         KS  T   N     + Q       +    + F          
Sbjct: 57  KTMLANMLIYRALNHAYGKSVSTKTVNDAYDSYKQQYGENFDAFLSQNGFSRSSFKES-- 114

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                         ++ +F+ +    +++  +  Q        +  +        D    
Sbjct: 115 --------------LRTNFLSEVALKKLKKVSESQLKAAWKTYQPKVTVQHILTSDEDTA 160

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQY-LLESDLHPQFQNLLK 251
            Q                        +  +       + GK  + L    L   F++   
Sbjct: 161 KQV---------ISDLASGKDFAMLAKTDSIDTATKDNGGKISFELNNKTLDATFKDAAY 211

Query: 252 K-SQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT 295
           K    + T  P     G E I + +    G   + K  L+A     
Sbjct: 212 KLKNGDYTQTPVKVTDGYEVIKMINHPAKGTFTSSKKVLTASVYAK 257


>gi|260904425|ref|ZP_05912747.1| SurA-like protein [Brevibacterium linens BL2]
          Length = 254

 Score = 42.7 bits (98), Expect = 0.067,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 11/147 (7%)

Query: 41  RIRTTINGEVITDGDI-----------SKRIALLKLQKINGELEKIAVQELIVETLKKQE 89
           ++   +NGE IT  D              +      Q    +L+    + L+   L  QE
Sbjct: 57  KVVAEVNGEKITKDDFVPLYETQYQQMQMQSQQSGQQVDEKQLKTQTAENLVSTELLSQE 116

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
            EK  I      V+    + A+++ +S +DF + + KQG+ +      L  Q     ++K
Sbjct: 117 AEKRDIKVSDKDVDKGLEESAKSSQMSKKDFLAAMKKQGMDEKKVHAELKTQLAIEGLIK 176

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVR 176
           +++     + E    A +Q        
Sbjct: 177 DEYGEFKASGEDIGQAYQQAKTQQEQM 203


>gi|199599418|ref|ZP_03212812.1| Parvulin-like peptidyl-prolyl isomerase [Lactobacillus rhamnosus
           HN001]
 gi|199589671|gb|EDY97783.1| Parvulin-like peptidyl-prolyl isomerase [Lactobacillus rhamnosus
           HN001]
          Length = 300

 Score = 42.7 bits (98), Expect = 0.068,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 78/299 (26%), Gaps = 35/299 (11%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIV 82
           I+  +   V+      SS     + G  +T  +    +             +  ++ +IV
Sbjct: 5   ILGVVGLFVAVTLAGCSSSTVANMKGAKVTKDEYYDAMK-------KTTTGQATLRNMIV 57

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
               +Q+          N+      +   ++  S  + + + +               Q 
Sbjct: 58  LKALEQQYPNKVSDKKVNSQFNKLKKQYGSSFDSTLEQNGYTES----------SFKDQI 107

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRI 202
                 +            +I +  +K +               +    ++ +   ++ I
Sbjct: 108 RTTLYSEVALKDMKKPTTKQIESQWKKYQPKIQ-----------VQHILVKTEDEAKQII 156

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL--LESDLHPQFQNLLKK--SQNNTT 258
            D ++       +    +           GK       ++ L   F++   K     + T
Sbjct: 157 SDYQKDPTEKNFESLAKKNSIDNGTKNKGGKLAAFDNTDTSLDSTFKSAAFKLKKAGDIT 216

Query: 259 N-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP--TKIEKHEAEYVKKLRSNAII 314
             P  TQ G   I +      G     K  L  Q               + K+   A +
Sbjct: 217 TTPVKTQYGYHVIRVISIAKKGTMKEHKKDLEKQIYTSWQSDSTVMNGIITKVLKKANV 275


>gi|29830081|ref|NP_824715.1| lipoprotein [Streptomyces avermitilis MA-4680]
 gi|29607191|dbj|BAC71250.1| putative lipoprotein [Streptomyces avermitilis MA-4680]
          Length = 219

 Score = 42.7 bits (98), Expect = 0.068,   Method: Composition-based stats.
 Identities = 15/149 (10%), Positives = 43/149 (28%), Gaps = 15/149 (10%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI------------- 60
           +         I    P+++             + G+ IT   +  R+             
Sbjct: 5   RRTALVLSAAIVAAAPLLTACGGEAHPGAAAVVGGQRITVAQLESRVNEVRTAQRAATTD 64

Query: 61  --ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
                +     G L +  +  L+++ +  +  + +G++              +  G +  
Sbjct: 65  DAQYEQTIAKTGSLTRDTLHSLVLDRVLDRAAKDAGVSVTRKDAQQMRTALEQQAGGTKA 124

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
             S++L + G+        L  +     +
Sbjct: 125 LESAWLQQYGVAPGRLDDSLRTEIEAQKL 153


>gi|225018196|ref|ZP_03707388.1| hypothetical protein CLOSTMETH_02133 [Clostridium methylpentosum
           DSM 5476]
 gi|224948993|gb|EEG30202.1| hypothetical protein CLOSTMETH_02133 [Clostridium methylpentosum
           DSM 5476]
          Length = 333

 Score = 42.7 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 29/330 (8%), Positives = 81/330 (24%), Gaps = 39/330 (11%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIR----------------TTINGEVITDGDISKR 59
           +     + +  I+   +       +                    T+NGE +   D+   
Sbjct: 1   MKKIICIALAAILTFGALSGCGKDASSASSASSSTSSATEKTGYLTVNGETV---DVPFV 57

Query: 60  IALLKLQKINGELEKIAVQ-----ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
           +   + +          +                E +    T D    ++   + A   G
Sbjct: 58  MKFDEYEVPIEHFRYYYLNIRDQYSYSATDTTDLEQKVMDETMDYLKTDFALKKLAEREG 117

Query: 115 LSAEDFSSF---LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
           ++  D  +       Q    N   +      +    +  DF      L+         + 
Sbjct: 118 ITLTDDDNATIEQSIQTTVSNMGSEEDYQSQLEQSYMTADFHRTLLELDTLNSKLLSTLF 177

Query: 172 NITVREYLIRTVL----FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
               +  L    +         +        +   ++A E         + + +++    
Sbjct: 178 EEGGKYALSEQDITDTIHQEFIHVSHMLISDEATAQEALERVQAGEDFDSLVAEYSEDSG 237

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA 286
               G        ++  +F++      +  T+    +  G   I       L  +    +
Sbjct: 238 MGEEGY--TFTYGEMVQEFEDAAYALQEGETSGLVQSTYGYHIIK-----RLPLDETYIS 290

Query: 287 YLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
                 T +  +    + + ++     I Y
Sbjct: 291 ENLDTMTSSVKKSELNKLLDEISEAFTITY 320


>gi|116326589|ref|YP_796510.1| peptidylprolyl isomerase [Lactococcus lactis subsp. cremoris SK11]
 gi|122064922|sp|Q02VE3|PRSA_LACLS RecName: Full=Foldase protein prsA; AltName: Full=Protease
           maturation protein prtM; Flags: Precursor
 gi|47198|emb|CAA32349.1| unnamed protein product [Lactococcus lactis subsp. cremoris]
 gi|76574943|gb|ABA47412.1| peptidyl-prolyl isomerase, maturation protein [Lactococcus lactis]
 gi|116108957|gb|ABJ74079.1| Parvulin-like peptidyl-prolyl isomerase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 299

 Score = 42.7 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 87/286 (30%), Gaps = 36/286 (12%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K+     +      + ++S      + +   T +G  +T+    K +             
Sbjct: 4   KMRLKVLLASTATALLLLSGCQSNQTDQTVATYSGGKVTESSFYKELK-------QSPTT 56

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           K  +  +++         K   +  + TVN  +  + +  G   E+F +FL + G   + 
Sbjct: 57  KTMLANMLIYRALNHAYGK---SVSTKTVNDAYDSYKQQYG---ENFDAFLSQNGFSRSS 110

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
           FK+ L    +    +K     K    +++              +  ++ +L S  D   Q
Sbjct: 111 FKESLRTNFLSEVALKKL--KKVSESQLKAAWKTY------QPKVTVQHILTSDEDTAKQ 162

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQY-LLESDLHPQFQNLLK 251
               +                     +  +       + GK  + L    L   F++   
Sbjct: 163 VISDLAA-----------GKDFAMLAKTDSIDTATKDNGGKISFELNNKTLDATFKDAAY 211

Query: 252 K-SQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT 295
           K    + T  P     G E I + +    G   + K  L+A     
Sbjct: 212 KLKNGDYTQTPVKVTDGYEVIKMINHPAKGTFTSSKKALTASVYAK 257


>gi|302560250|ref|ZP_07312592.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
 gi|302477868|gb|EFL40961.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
          Length = 215

 Score = 42.7 bits (98), Expect = 0.073,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 40/123 (32%), Gaps = 15/123 (12%)

Query: 43  RTTINGEVITDGDISKRI---------------ALLKLQKINGELEKIAVQELIVETLKK 87
              + GE IT   +  R+                  +     G L +  +  ++++ + +
Sbjct: 34  AAVVGGERITVSQLENRVDEVRAAQRAAVPDDAQYQQAIARTGTLTRDTLHSMVLDRVLE 93

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           +    +G++     V        + TG +    +++L + GI          +Q     +
Sbjct: 94  RAARDAGVSVTRKEVQQMRSGLEQQTGGAEALEAAWLQQYGIPPQRLDDNFRLQVQAQKL 153

Query: 148 VKN 150
            + 
Sbjct: 154 AQR 156


>gi|294055716|ref|YP_003549374.1| hypothetical protein Caka_2186 [Coraliomargarita akajimensis DSM
           45221]
 gi|293615049|gb|ADE55204.1| conserved hypothetical protein [Coraliomargarita akajimensis DSM
           45221]
          Length = 291

 Score = 42.7 bits (98), Expect = 0.073,   Method: Composition-based stats.
 Identities = 23/247 (9%), Positives = 65/247 (26%), Gaps = 8/247 (3%)

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
            G   +     LI+ T  +    ++      N         A       ++       + 
Sbjct: 30  QGPPNERDDDNLIIITDAQVAHLQARWIKQWNRTPNQLELQASVDAYVRDEILYREALRQ 89

Query: 129 IGDNHFKQYLAIQSIWPDVVK--NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
             D    +         +++             ++E     +  +     +Y  + + F 
Sbjct: 90  GLDRQDPRVRLALIQKMNLLSAGRSNTDDIPQADLEAFFALRSERYQVPAQYSFQQIYFK 149

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
              +       +  +  D+E +  RLP         +  +  +       +     +   
Sbjct: 150 ADADAEAQARDLAAQFNDSEPTAERLPNYG----DHSMLVRAMHNVSEPEVARIFGNEFA 205

Query: 247 QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEI--ALKAYLSAQNTPTKIEKHEAEY 304
            NL   S++  + P  +  G+  + +             ++  +         E  + + 
Sbjct: 206 ANLSHLSEHKWSGPVRSTYGMHVVKLTQLEQAHIPELNQVREQVETDLRYETSEAAKEQA 265

Query: 305 VKKLRSN 311
             +L S 
Sbjct: 266 YLELASK 272


>gi|261329338|emb|CBH12319.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 383

 Score = 42.7 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 10/81 (12%), Positives = 18/81 (22%), Gaps = 1/81 (1%)

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
                      +  E     L +    +  F+        G    +        F  +  
Sbjct: 300 DAINLAQAILAQHKERKTWSLDEFVQVVRDFSECGSAKRDGDLGMVESGTYTEGFDTVAF 359

Query: 252 K-SQNNTTNPYVTQKGVEYIA 271
                  + P  T+ GV  I 
Sbjct: 360 SLKSGEVSAPVETELGVHLIY 380


>gi|194770449|ref|XP_001967306.1| GF15934 [Drosophila ananassae]
 gi|190614582|gb|EDV30106.1| GF15934 [Drosophila ananassae]
          Length = 389

 Score = 42.7 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 15/183 (8%), Positives = 40/183 (21%), Gaps = 1/183 (0%)

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
            E+ +       +       +   N     +    + ++          Y          
Sbjct: 61  NELLEEQPDRGFDRDFSRASKQIVNWKTHPQLPYGWEERVMPHTKETYFYDTKTGKVHYT 120

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           +  +  LK  N +       +    +   E     + F             ++  +  E 
Sbjct: 121 LPRNDPLKCRNPKGAFNFRMRCRHILIKHEESETRISFWQKRVLRTKAEAFERITRVREM 180

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD-LHPQFQNLLKKSQNNTTNPYVTQKG 266
            R    K        +        G    +   + L      + +      ++ + T  G
Sbjct: 181 IRTGKMKFALAASVVSDCCTARKGGDMGSIRLGETLLDFEVAVARLEMYELSDIFETDSG 240

Query: 267 VEY 269
              
Sbjct: 241 YHI 243


>gi|146318892|ref|YP_001198604.1| parvulin-like peptidyl-prolyl isomerase [Streptococcus suis
           05ZYH33]
 gi|145689698|gb|ABP90204.1| Parvulin-like peptidyl-prolyl isomerase [Streptococcus suis
           05ZYH33]
 gi|292558552|gb|ADE31553.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Streptococcus suis
           GZ1]
          Length = 348

 Score = 42.7 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 28/318 (8%), Positives = 77/318 (24%), Gaps = 42/318 (13%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING 70
             +K         +     +        + +   T+ G  IT  +  +++          
Sbjct: 14  SLMKQTKKILAGAVTLFAAVTLAACSNAADKDIITMKGNTITVSEFYEKVK-------TN 66

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
              +  +  +++  + +    + G    +  VN  + + A   G S              
Sbjct: 67  SQAQQVLLSMVISNVFE---NQYGDKVSAEEVNKEYDKKAEQLGASFNAAL-------SS 116

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
               ++    Q     +V+          E E+     K         +   V+    + 
Sbjct: 117 AGLTEESYKEQIRTNKLVEYAVKQAA---EKELTDENYKAAYDAYTPEVTARVIKLADEA 173

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQ--FQ 247
           K +      +                   +  ++      + G+ ++   S   P    +
Sbjct: 174 KAKEVLAAAQA---------EGADFAQLAKDNSTDTTTKDNGGEVKFDSTSTTVPAEVQK 224

Query: 248 NLLKKSQNNTTNPYVTQ-------KGVEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEK 299
            +            ++             + +  K +   +    K  L       K   
Sbjct: 225 AVFALDAGQVGASVISSVDMKTYTTSYYVVKLDAKSEKSAKWEDYKDKLKEIILAQKQRD 284

Query: 300 --HEAEYVKKLRSNAIIH 315
               A  +K+    A + 
Sbjct: 285 SSFVATVLKEALQKANVK 302


>gi|72391154|ref|XP_845871.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62175503|gb|AAX69643.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70802407|gb|AAZ12312.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 383

 Score = 42.7 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 10/81 (12%), Positives = 18/81 (22%), Gaps = 1/81 (1%)

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
                      +  E     L +    +  F+        G    +        F  +  
Sbjct: 300 DAINLAQAILAQHKERKTWSLDEFVQVVRDFSECGSAKRDGDLGMVESGTYTEGFDTVAF 359

Query: 252 K-SQNNTTNPYVTQKGVEYIA 271
                  + P  T+ GV  I 
Sbjct: 360 SLKSGEVSAPVETELGVHLIY 380


>gi|17230169|ref|NP_486717.1| hypothetical protein all2677 [Nostoc sp. PCC 7120]
 gi|17131770|dbj|BAB74376.1| all2677 [Nostoc sp. PCC 7120]
          Length = 225

 Score = 42.7 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 7/146 (4%), Positives = 32/146 (21%), Gaps = 1/146 (0%)

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
               +    +     +L +          L     +    +     + +         ++
Sbjct: 74  EKFKQATWGHKVESYFLTQKAQLDQVTYSLLRTRDMALAQELYFRIKAKEQSFAEIARQY 133

Query: 223 ASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           +      + G       +         L          P    + +  + +        +
Sbjct: 134 SQGPEAQTGGLIGPTPLTQPHPQLVAKLRASQPGQLLPPTRLGEWIVIVRLEQMVHAKLD 193

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKK 307
            + +  L  +     +++     + K
Sbjct: 194 DSTRKKLLNKLFQEWLQESLQATLNK 219


>gi|150006852|ref|YP_001301595.1| peptidyl-prolyl cis-trans isomerase [Parabacteroides distasonis
           ATCC 8503]
 gi|255016117|ref|ZP_05288243.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_7]
 gi|256842537|ref|ZP_05548039.1| peptidyl-prolyl cis-trans isomerase [Parabacteroides sp. D13]
 gi|262384400|ref|ZP_06077535.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_33B]
 gi|298377277|ref|ZP_06987230.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_19]
 gi|301308674|ref|ZP_07214626.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 20_3]
 gi|149935276|gb|ABR41973.1| peptidyl-prolyl cis-trans isomerase [Parabacteroides distasonis
           ATCC 8503]
 gi|256735893|gb|EEU49225.1| peptidyl-prolyl cis-trans isomerase [Parabacteroides sp. D13]
 gi|262294103|gb|EEY82036.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_33B]
 gi|298265691|gb|EFI07351.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_19]
 gi|300833198|gb|EFK63816.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 20_3]
          Length = 711

 Score = 42.7 bits (98), Expect = 0.076,   Method: Composition-based stats.
 Identities = 19/231 (8%), Positives = 59/231 (25%), Gaps = 17/231 (7%)

Query: 50  VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
            ++  +I K     K      E +           +K   ++      D +         
Sbjct: 238 EVSKSEIEKLYNQRKELYKQKESK----------VIKYIAVDIRPSKEDYDKAQAEIESL 287

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
                 S        +   +             + P++ +     + G +   +  N + 
Sbjct: 288 KEELATSERVADVVNENSEVPYVDAFFTEKA--LDPEMKQFATTSEVGAVYGPVFENDKY 345

Query: 170 MKNIT-VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
                  +     +V  S      +++            +           +K+++    
Sbjct: 346 RMFKLVDKTVAPDSVKVSHIMLAGKSEAETTALADSLMGALKGGANFAELAKKYSADQAA 405

Query: 229 VSIGKAQYLLESD----LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK 275
            + G+  +  E      ++  F+  +  +  N      +  G   + + +K
Sbjct: 406 ENGGELGWFTEVTALRGVNDDFKKAVFSTPLNEVAVVKSLYGTHLVKVTEK 456


>gi|85716537|ref|ZP_01047508.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter sp.
           Nb-311A]
 gi|85696726|gb|EAQ34613.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter sp.
           Nb-311A]
          Length = 582

 Score = 42.7 bits (98), Expect = 0.079,   Method: Composition-based stats.
 Identities = 31/376 (8%), Positives = 79/376 (21%), Gaps = 83/376 (22%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK----RIALLKLQ----K 67
           +    +++ F I  I         S    T+    I+     +    R+  +  Q     
Sbjct: 3   IVMGLLIVAFGIWGIADIFQGFGQSA-LATVGNTEISTEQFRQIYTDRLQQIGRQFGRTL 61

Query: 68  INGELE-----KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN---TGLSAED 119
              ++      +  +Q++I E    ++  + G+      ++   +         G     
Sbjct: 62  PPDQVRALGIDRQILQQVIAEAALDEDARRKGLEVSDKEISRQIMSDPNFKGANGAFDPA 121

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL-------------------- 159
             + L +Q                    +                               
Sbjct: 122 RFAGLIRQLGYTEQRYVTEQRNLALRRQIVGTVTAGVEPSTKLLEALNRFQNEQRTIDYV 181

Query: 160 --------------EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ------ 199
                         E ++       K         +     +   ++     V       
Sbjct: 182 KLGAAQAGSIDPPTEAQLSGYFDAHKVQFRAPEYRKIAFVVLTPEEVAKWTTVSDDDAKK 241

Query: 200 ------------KRIKDAEESRLRLPKDCNKLEKFASKIH----------DVSIGKAQYL 237
                       +R K  +     +       EK AS               S      +
Sbjct: 242 VYEQRKDKLSTPERRKIWQIIFPSVADAQAAREKIASGASFDDIAKERNLATSDIDLGTI 301

Query: 238 LESDL--HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT 295
              ++      +       ++ + P   + GV  + +       G       ++ +    
Sbjct: 302 SRPEIVDPAVAEAAFSLKTDDVSQPIQGKFGVALVKVSKIEP--GNQPTYDSVATKLKHD 359

Query: 296 KIEKHEAEYVKKLRSN 311
                    V  L + 
Sbjct: 360 IAVDRGRAEVNNLHNK 375


>gi|85703584|ref|ZP_01034688.1| hypothetical protein ROS217_22622 [Roseovarius sp. 217]
 gi|85672512|gb|EAQ27369.1| hypothetical protein ROS217_22622 [Roseovarius sp. 217]
          Length = 604

 Score = 42.7 bits (98), Expect = 0.080,   Method: Composition-based stats.
 Identities = 19/254 (7%), Positives = 49/254 (19%), Gaps = 22/254 (8%)

Query: 63  LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV--------NYFFVQHARNTG 114
           L   +    +       L+           +       T              + A  +G
Sbjct: 130 LNETQFEENIRAETASTLVQAAALAGLQTPATYLDTMMTYLAERRSLAFAVLDRSALQSG 189

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
           L                  F      +  +  +     +      E  +     + +   
Sbjct: 190 LPVPSEEDLQAYHQANLPSFTTPETKKIAFAWITPAMIIDSVEVEEAALRDAYAEREAEF 249

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKA 234
                         D +   +             R R+ +        + +  ++S    
Sbjct: 250 NLPERRLVERLIFADTEAATRA------------RARIDEGIALEMLVSERGLEMSDVDL 297

Query: 235 QYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQN 292
             +   DL    + +          P  T  G     +       +      +  L  Q 
Sbjct: 298 GDVAREDLGSAAEPVFSAEAGEVVGPIDTSLGPALFRVNAILAAQVTPFEEAEPQLRDQL 357

Query: 293 TPTKIEKHEAEYVK 306
              +  +     + 
Sbjct: 358 AGDRARRVIEAQID 371


>gi|114656719|ref|XP_001161176.1| PREDICTED: hypothetical protein [Pan troglodytes]
 gi|332843741|ref|XP_003314710.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting
           4-like [Pan troglodytes]
          Length = 130

 Score = 42.4 bits (97), Expect = 0.082,   Method: Composition-based stats.
 Identities = 10/87 (11%), Positives = 25/87 (28%), Gaps = 9/87 (10%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK----- 251
               +I +A E      +      +++        G   ++    +   FQ         
Sbjct: 46  EKHDKIMEAMEKLKSGMRFNEVATQYSED-KARQGGVLGWMTRGSMVGPFQEAAFALPIS 104

Query: 252 -KSQNNTTNP-YVTQKGVEYIAICDKR 276
              +   T+P   T+ G     +  ++
Sbjct: 105 GMDKPVFTDPAVKTKFGYHI-MVEGRK 130


>gi|295706006|ref|YP_003599081.1| putative lipoprotein [Bacillus megaterium DSM 319]
 gi|294803665|gb|ADF40731.1| putative lipoprotein [Bacillus megaterium DSM 319]
          Length = 300

 Score = 42.4 bits (97), Expect = 0.083,   Method: Composition-based stats.
 Identities = 34/308 (11%), Positives = 84/308 (27%), Gaps = 43/308 (13%)

Query: 18  TYFVLIIFCIVPIVSYKSWAMSS--------------RIRTTINGEVITDGDISKRIALL 63
              +L +      ++      S+              +      G  +T  + ++ +A+ 
Sbjct: 6   LKLLLAVLTAFGFLTGCGGKHSNTMFPSVEISQLSSTKELAAYEGGKVTGAEFNRFLAVE 65

Query: 64  KLQKINGEL-----EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
                +  L      K  +++L+++ +          +           +  + +     
Sbjct: 66  GFLNPDAPLNDTSYRKELLRQLVMQKILI---SHLKTSDKVQKQVEDMWKQIKRSYNEDT 122

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
               +              +  Q      ++  F  +  + E+                Y
Sbjct: 123 RKQGYEVLNIRSS-----DVTNQLTNQFKLEEYFRKQITSDEL--------------TAY 163

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
             R        +  Q           A     +     +  +K+A       I  A  L 
Sbjct: 164 YKRIENDLTRVSFTQLAFSTLHDAAAAAAELQKGTSLQDVQKKYADVQTVSKIENADNLK 223

Query: 239 ESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
            S L P F ++LKK     ++ P    K    + I  ++D   E  +K  +  +     I
Sbjct: 224 LSSLSPSFIDVLKKQHIGESSEPIKMGKVYYIL-ILKQKDKKTESEVKEEMMKELVLNHI 282

Query: 298 EKHEAEYV 305
            ++  + +
Sbjct: 283 NRYMQDEL 290


>gi|322829816|gb|EFZ33080.1| peptidyl-prolyl cis-trans isomerase [Trypanosoma cruzi]
          Length = 291

 Score = 42.4 bits (97), Expect = 0.084,   Method: Composition-based stats.
 Identities = 9/77 (11%), Positives = 20/77 (25%), Gaps = 1/77 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ- 254
               +     + S   L +    + +++        G    +       +F         
Sbjct: 212 AEAIRARHGDQTSVWSLDEFTAVVREYSECGSAKRDGDLGVVESGTYTEKFDAAAFSLGC 271

Query: 255 NNTTNPYVTQKGVEYIA 271
              + P  T+ GV  I 
Sbjct: 272 GMVSAPVETELGVHLIY 288


>gi|215959352|gb|ACJ71247.1| peptidyl-prolyl cis-trans isomerase [Trypanosoma cruzi]
          Length = 421

 Score = 42.4 bits (97), Expect = 0.084,   Method: Composition-based stats.
 Identities = 9/77 (11%), Positives = 20/77 (25%), Gaps = 1/77 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ- 254
               +     + S   L +    + +++        G    +       +F         
Sbjct: 342 AEAIRARHGDQTSVWSLDEFTAVVREYSECGSAKRDGDLGVVESGTYTEKFDAAAFSLGC 401

Query: 255 NNTTNPYVTQKGVEYIA 271
              + P  T+ GV  I 
Sbjct: 402 GMVSAPVETELGVHLIY 418


>gi|229548632|ref|ZP_04437357.1| peptidylprolyl isomerase [Enterococcus faecalis ATCC 29200]
 gi|255971145|ref|ZP_05421731.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis T1]
 gi|255973769|ref|ZP_05424355.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis T2]
 gi|256617573|ref|ZP_05474419.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis ATCC 4200]
 gi|256761456|ref|ZP_05502036.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis T3]
 gi|256957443|ref|ZP_05561614.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis DS5]
 gi|256964476|ref|ZP_05568647.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis HIP11704]
 gi|257089114|ref|ZP_05583475.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis CH188]
 gi|257415255|ref|ZP_05592249.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis AR01/DG]
 gi|257420948|ref|ZP_05597938.1| rotamase [Enterococcus faecalis X98]
 gi|300861731|ref|ZP_07107811.1| putative foldase protein PrsA [Enterococcus faecalis TUSoD Ef11]
 gi|307269720|ref|ZP_07551050.1| putative foldase protein PrsA [Enterococcus faecalis TX4248]
 gi|307272499|ref|ZP_07553752.1| putative foldase protein PrsA [Enterococcus faecalis TX0855]
 gi|307277028|ref|ZP_07558134.1| putative foldase protein PrsA [Enterococcus faecalis TX2134]
 gi|307284552|ref|ZP_07564714.1| putative foldase protein PrsA [Enterococcus faecalis TX0860]
 gi|312904295|ref|ZP_07763457.1| putative foldase protein PrsA [Enterococcus faecalis TX0635]
 gi|312953070|ref|ZP_07771920.1| putative foldase protein PrsA [Enterococcus faecalis TX0102]
 gi|229306263|gb|EEN72259.1| peptidylprolyl isomerase [Enterococcus faecalis ATCC 29200]
 gi|255962163|gb|EET94639.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis T1]
 gi|255966641|gb|EET97263.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis T2]
 gi|256597100|gb|EEU16276.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis ATCC 4200]
 gi|256682707|gb|EEU22402.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis T3]
 gi|256947939|gb|EEU64571.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis DS5]
 gi|256954972|gb|EEU71604.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis HIP11704]
 gi|256997926|gb|EEU84446.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis CH188]
 gi|257157083|gb|EEU87043.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis ARO1/DG]
 gi|257162772|gb|EEU92732.1| rotamase [Enterococcus faecalis X98]
 gi|300848256|gb|EFK76013.1| putative foldase protein PrsA [Enterococcus faecalis TUSoD Ef11]
 gi|306503229|gb|EFM72483.1| putative foldase protein PrsA [Enterococcus faecalis TX0860]
 gi|306506272|gb|EFM75436.1| putative foldase protein PrsA [Enterococcus faecalis TX2134]
 gi|306510784|gb|EFM79801.1| putative foldase protein PrsA [Enterococcus faecalis TX0855]
 gi|306513830|gb|EFM82432.1| putative foldase protein PrsA [Enterococcus faecalis TX4248]
 gi|310628979|gb|EFQ12262.1| putative foldase protein PrsA [Enterococcus faecalis TX0102]
 gi|310632391|gb|EFQ15674.1| putative foldase protein PrsA [Enterococcus faecalis TX0635]
 gi|315031408|gb|EFT43340.1| putative foldase protein PrsA [Enterococcus faecalis TX0017]
 gi|315034487|gb|EFT46419.1| putative foldase protein PrsA [Enterococcus faecalis TX0027]
 gi|315144514|gb|EFT88530.1| putative foldase protein PrsA [Enterococcus faecalis TX2141]
 gi|315146998|gb|EFT91014.1| putative foldase protein PrsA [Enterococcus faecalis TX4244]
 gi|315154018|gb|EFT98034.1| putative foldase protein PrsA [Enterococcus faecalis TX0031]
 gi|315156661|gb|EFU00678.1| putative foldase protein PrsA [Enterococcus faecalis TX0043]
 gi|315159697|gb|EFU03714.1| putative foldase protein PrsA [Enterococcus faecalis TX0312]
 gi|315162001|gb|EFU06018.1| putative foldase protein PrsA [Enterococcus faecalis TX0645]
 gi|315170748|gb|EFU14765.1| putative foldase protein PrsA [Enterococcus faecalis TX1342]
 gi|315578736|gb|EFU90927.1| putative foldase protein PrsA [Enterococcus faecalis TX0630]
 gi|327534276|gb|AEA93110.1| peptidyl-prolyl cis-trans isomerase [Enterococcus faecalis OG1RF]
          Length = 342

 Score = 42.4 bits (97), Expect = 0.086,   Method: Composition-based stats.
 Identities = 28/312 (8%), Positives = 74/312 (23%), Gaps = 39/312 (12%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +L     + + S  + +  S+   T+ G  IT  D   +I             + 
Sbjct: 1   MKKKLILAAAGAMAVFSLAACSSGSKDIATMKGSTITVDDFYNQIK-------EQSTSQQ 53

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           A  ++++  + +++        D         ++        E                +
Sbjct: 54  AFSQMVIYKVFEEKYGDKVTDKD-------IQKNFDEAKEQVEAQGGKFSDALKQAGLTE 106

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    Q                  + ++              +        I      + 
Sbjct: 107 KTFKKQLKQRAAYDAGLKAHLKITDEDLKTAW--------ASFHPEVEAQIIQVASEDDA 158

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKKS 253
             V+K      E            EK          GK ++  ++   P    +   K  
Sbjct: 159 KAVKK------EITDGGDFTKIAKEKSTDAATKKDGGKIKFDSQATTVPAEVKEAAFKLK 212

Query: 254 QNNTTNPYVTQK------GVEYIAICDKRDLGGE-IALKAYLSAQNTPTKI--EKHEAEY 304
               + P               + +   +  G +    +  +      TK+  +   ++ 
Sbjct: 213 DGEVSEPIAATNMQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKIAEETKLADQTFVSKV 272

Query: 305 VKKLRSNAIIHY 316
           +      A +  
Sbjct: 273 ISDELKAANVKI 284


>gi|119476248|ref|ZP_01616599.1| hypothetical protein GP2143_07354 [marine gamma proteobacterium
           HTCC2143]
 gi|119450112|gb|EAW31347.1| hypothetical protein GP2143_07354 [marine gamma proteobacterium
           HTCC2143]
          Length = 332

 Score = 42.4 bits (97), Expect = 0.087,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 75/259 (28%), Gaps = 11/259 (4%)

Query: 62  LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
               Q I  EL K  +    ++   +  I +         +         +     E F 
Sbjct: 62  RQSAQLIETELSKDVL----LQRALELNIHRYDNIVYQRLIRNMNFLQLADGKTDNELFE 117

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
             LD +   D++  +   IQ +   ++ N+  L   +  ++   N++  +      Y I 
Sbjct: 118 QALDMRLHLDDNVIKRRLIQMMEQRLLANNPPLPPSDEAIKAEFNQRFSELRKPPLYSIE 177

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK----DCNKLEKFASKIHDVSIGKAQYL 237
            + F+                ++ +    +          K ++   +    + G +  L
Sbjct: 178 HIFFNQDRESEAPSIIATITEQNLDFQAAKHFSSPYLQGYKFDRQTPRQLAQNFGNSFVL 237

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEI--ALKAYLSAQNTPT 295
                 P  Q++ +        P  +  G+ Y+ +             ++  L       
Sbjct: 238 SLKQAVPTLQSVSQPVA-QWLGPIRSAFGLHYVWLNALEPARDAQLKEVEPQLRRDLDYA 296

Query: 296 KIEKHEAEYVKKLRSNAII 314
              +     +  LR N  I
Sbjct: 297 AQAQALQNAINLLRKNYDI 315


>gi|325126170|gb|ADY85500.1| PrtM precursor [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 307

 Score = 42.4 bits (97), Expect = 0.087,   Method: Composition-based stats.
 Identities = 32/301 (10%), Positives = 74/301 (24%), Gaps = 35/301 (11%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTIN--GEVITDGDISKRIALLKLQKINGELEKIAVQE 79
           + +      +   + A SS   T +N  G  IT  +  + +             +  +  
Sbjct: 8   IAVLAGAAAIGLSTAACSSSSATVVNYKGGKITQDEYYEAMKDTSA-------GQSTLVS 60

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           LI+    K +      +   N                 + + S             +   
Sbjct: 61  LIIYRTLKAQYGDKVSSKKIN----------AEYNKYKKQYGSSFSTVLSSSGLTTKSFK 110

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
                   +             +     +     T            +           +
Sbjct: 111 QNLATNLYLVAALKDLEKPTTTQEKNWWKSYHTKTT------VQHIVVAKKSTAETVIKK 164

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN--T 257
            +   +  +  +        +K A K+             + L   F++ + K +    T
Sbjct: 165 LKSGTSFATLAKKYSTETATKKKAGKMAAFDSTD------TSLSSTFKSAVWKLKEGEYT 218

Query: 258 TNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT--KIEKHEAEYVKKLRSNAIIH 315
           T P  T  G E I +    + G     K+++  Q             + + K+   A ++
Sbjct: 219 TTPVKTLSGYEVIKVLKTTEKGSYTKNKSFIDKQLYAKWAADSNTMTKIISKVLKKANVN 278

Query: 316 Y 316
            
Sbjct: 279 I 279


>gi|104774371|ref|YP_619351.1| peptidylprolyl isomerase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116514466|ref|YP_813372.1| peptidylprolyl isomerase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103423452|emb|CAI98333.1| Putative peptidylprolyl isomerase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116093781|gb|ABJ58934.1| Parvulin-like peptidyl-prolyl isomerase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 303

 Score = 42.4 bits (97), Expect = 0.087,   Method: Composition-based stats.
 Identities = 32/301 (10%), Positives = 74/301 (24%), Gaps = 35/301 (11%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTIN--GEVITDGDISKRIALLKLQKINGELEKIAVQE 79
           + +      +   + A SS   T +N  G  IT  +  + +             +  +  
Sbjct: 8   IAVLAGAAAIGLSTAACSSSSATVVNYKGGKITQDEYYEAMKDTSA-------GQSTLVS 60

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           LI+    K +      +   N                 + + S             +   
Sbjct: 61  LIIYRTLKAQYGDKVSSKKIN----------AEYNKYKKQYGSSFSTVLSSSGLTTKSFK 110

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
                   +             +     +     T            +           +
Sbjct: 111 QNLATNLYLVAALKDLEKPTTTQEKNWWKSYHTKTT------VQHIVVAKKSTAETVIKK 164

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN--T 257
            +   +  +  +        +K A K+             + L   F++ + K +    T
Sbjct: 165 LKSGTSFATLAKKYSTETATKKKAGKMAAFDSTD------TSLSSTFKSAVWKLKEGEYT 218

Query: 258 TNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT--KIEKHEAEYVKKLRSNAIIH 315
           T P  T  G E I +    + G     K+++  Q             + + K+   A ++
Sbjct: 219 TTPVKTLSGYEVIKVLKTTEKGSYTKNKSFIDKQLYAKWAADSNTMTKIISKVLKKANVN 278

Query: 316 Y 316
            
Sbjct: 279 I 279


>gi|256852157|ref|ZP_05557543.1| protease maturation protein [Lactobacillus jensenii 27-2-CHN]
 gi|260661810|ref|ZP_05862721.1| protease maturation protein [Lactobacillus jensenii 115-3-CHN]
 gi|282933671|ref|ZP_06339030.1| foldase protein PrsA [Lactobacillus jensenii 208-1]
 gi|256615203|gb|EEU20394.1| protease maturation protein [Lactobacillus jensenii 27-2-CHN]
 gi|260547557|gb|EEX23536.1| protease maturation protein [Lactobacillus jensenii 115-3-CHN]
 gi|281302204|gb|EFA94447.1| foldase protein PrsA [Lactobacillus jensenii 208-1]
          Length = 302

 Score = 42.4 bits (97), Expect = 0.089,   Method: Composition-based stats.
 Identities = 33/274 (12%), Positives = 73/274 (26%), Gaps = 39/274 (14%)

Query: 48  GEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
           G  IT  +  K +        + +  K  +  +I+    KQ+  K       +     + 
Sbjct: 35  GGKITQDEYYKELK-------SSQAGKSTLANMIIYRALKQQYGKKVSQKQVDKEYNAYK 87

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
           +   ++  SA + + +       +                + +    K            
Sbjct: 88  KQYGSSFESALEQNGYTTSSFKKNIETNLLTVAALKDIKKITSKQEQKAWKS-------- 139

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKI 226
                    +  ++ +L              +   +D  +            +K++    
Sbjct: 140 ------YQPKVTVQHIL-----------VSKKSTAEDIIKQLKSGTSFATLAKKYSTDSA 182

Query: 227 HDVSIGKAQYLLESD--LHPQFQNLLKKSQNN--TTNPYVTQKGVEYIAICDKRDLGGEI 282
                GK      +D  L   F+    K +    TT P  TQ G E I +      G   
Sbjct: 183 TKDKGGKLAAFDSTDTTLDSDFKTAAFKLKTGEYTTTPVKTQSGYEIIKMIKHPSKGKFS 242

Query: 283 ALKAYLSAQNTPTKIEKHE--AEYVKKLRSNAII 314
             K  +  Q   +  +        ++ +   + I
Sbjct: 243 DHKKEIDEQIYQSMEQDTATMQSVIRTVLKKSDI 276


>gi|145608650|ref|XP_001408826.1| hypothetical protein MGG_12826 [Magnaporthe oryzae 70-15]
 gi|145016097|gb|EDK00587.1| hypothetical protein MGG_12826 [Magnaporthe oryzae 70-15]
          Length = 126

 Score = 42.4 bits (97), Expect = 0.089,   Method: Composition-based stats.
 Identities = 10/85 (11%), Positives = 27/85 (31%), Gaps = 6/85 (7%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
               + ++A +      K      +++        G   +  +  L  +F+ +    + +
Sbjct: 43  EKHSKKEEALQKIRDGAKFDEVAREYSED-KGRQGGALGWKAKGTLKAEFEAVAYTLEPS 101

Query: 257 TT-----NPYVTQKGVEYIAICDKR 276
           TT         T  G   I +  ++
Sbjct: 102 TTSNPKIGEAKTGFGYHIIMVEGRK 126


>gi|219111311|ref|XP_002177407.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411942|gb|EEC51870.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 195

 Score = 42.4 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 10/83 (12%), Positives = 22/83 (26%), Gaps = 4/83 (4%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDL---HPQFQNLLKK 252
             + R +  E+    +       +KF+     +   G    L+           Q     
Sbjct: 54  KQKIRNRVNEDGVYVIDAFEAAAKKFSRDETTNFRGGLIGELVPQGYCRSVELDQACFSV 113

Query: 253 SQNNTTNPYVTQKGVEYIAICDK 275
                  P  +  G   I + ++
Sbjct: 114 RLGEIEGPLESDYGFHLILVSER 136


>gi|291515888|emb|CBK65098.1| PPIC-type PPIASE domain [Alistipes shahii WAL 8301]
          Length = 676

 Score = 42.4 bits (97), Expect = 0.092,   Method: Composition-based stats.
 Identities = 29/306 (9%), Positives = 70/306 (22%), Gaps = 16/306 (5%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
            + + T     + ++    + ++  I+ + +   ++ +      I+GE I   +   +  
Sbjct: 4   LNTLRTKFGIVLSIIIA--LALLAFILSLKTEMGFSGNDPRVGVIDGEKINYSEYYDQYE 61

Query: 62  LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
            +K Q    E ++     L     +                 +         GL   +  
Sbjct: 62  TIKSQNNMQESDEQQSAMLANAAWQALI------------AKHVLTPGFDRMGLRVTEPE 109

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
                 G   +             +             E    A     +          
Sbjct: 110 RLAMVSGQHPSQAFYNAFADPRTGEYSVAAISQFLAQAETNPEAANAWAQLNEQARLERE 169

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC-NKLEKFASKIHDVSIGKAQYLLES 240
              +            ++        ++    K    K       +  VS G  +    S
Sbjct: 170 VQKYFGLVKGGVYVNSLEVARGVEAANKSFSGKWAGKKFSAVPDSLVKVSSGDVKAYYNS 229

Query: 241 DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH 300
             +   Q   +           T   +  +      ++G E A    +       +  K 
Sbjct: 230 HKNQFKQTPSRTISYVVFEVSPTDDDLLALE-KSVTEVGREFAAAEEVKTFVRANRNGKI 288

Query: 301 EAEYVK 306
              YV 
Sbjct: 289 ADSYVS 294


>gi|254411881|ref|ZP_05025657.1| PPIC-type PPIASE domain protein [Microcoleus chthonoplastes PCC
           7420]
 gi|196181603|gb|EDX76591.1| PPIC-type PPIASE domain protein [Microcoleus chthonoplastes PCC
           7420]
          Length = 245

 Score = 42.4 bits (97), Expect = 0.092,   Method: Composition-based stats.
 Identities = 21/237 (8%), Positives = 68/237 (28%), Gaps = 19/237 (8%)

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE-DFSSFLDK 126
                 K    ++  + + ++  ++ GI      +     +  +   L    D  ++L  
Sbjct: 18  KQDIQYKKVCHQIWSQRVIERATQERGIVVTPEEIQAEADKQRQAMHLEKAADTLAWLAD 77

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
           Q I  + ++  + ++ +   +    F         E+     + +    +  L + +L  
Sbjct: 78  QRITPDDWEAGIRLRLLTQKLADCLFGN-------EVEKFFTQNRLDYEQILLYQLIL-- 128

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
                  ++   ++   + EE  +   +  +  +    +      G    +    L P+ 
Sbjct: 129 ------ASEPLARELFYEIEEGEISFYEAAHLYDIDPERKRRC--GYEGKVYRWRLKPEM 180

Query: 247 QNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEA 302
            + +  +       P  T  G   +   +             +  +     +E    
Sbjct: 181 ASAVFAAPIGEVVGPIKTDLGYHLLRAEEFIPAQLTPERSQEILNRLFGQWLESEVN 237


>gi|29375282|ref|NP_814435.1| rotamase family protein [Enterococcus faecalis V583]
 gi|257077560|ref|ZP_05571921.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis JH1]
 gi|257086046|ref|ZP_05580407.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis D6]
 gi|294780469|ref|ZP_06745834.1| putative foldase protein PrsA [Enterococcus faecalis PC1.1]
 gi|46396846|sp|Q837Y9|PRSA_ENTFA RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|29342742|gb|AAO80506.1| rotamase family protein [Enterococcus faecalis V583]
 gi|256985590|gb|EEU72892.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis JH1]
 gi|256994076|gb|EEU81378.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus
           faecalis D6]
 gi|294452468|gb|EFG20905.1| putative foldase protein PrsA [Enterococcus faecalis PC1.1]
 gi|315025711|gb|EFT37643.1| putative foldase protein PrsA [Enterococcus faecalis TX2137]
          Length = 342

 Score = 42.4 bits (97), Expect = 0.093,   Method: Composition-based stats.
 Identities = 28/312 (8%), Positives = 74/312 (23%), Gaps = 39/312 (12%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +L     + + S  + +  S+   T+ G  IT  D   +I             + 
Sbjct: 1   MKKKLILAAAGAMAVFSLAACSSGSKDIATMKGSTITVDDFYNQIK-------EQSTSQQ 53

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           A  ++++  + +++        D         ++        E                +
Sbjct: 54  AFSQMVIYKVFEEKYGDKVTDKD-------IQKNFDEAKEQVEAQGGKFSDALKQAGLTE 106

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    Q                  + ++              +        I      + 
Sbjct: 107 KTFKKQLKQRAAYDAGLKAHLKITDEDLKTAW--------ASFHPEVEAQIIQVASEDDA 158

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKKS 253
             V+K      E            EK          GK ++  ++   P    +   K  
Sbjct: 159 KAVKK------EITDGGDFTKIAKEKSTDTATKKDGGKIKFDSQATTVPAEVKEAAFKLK 212

Query: 254 QNNTTNPYVTQK------GVEYIAICDKRDLGGE-IALKAYLSAQNTPTKI--EKHEAEY 304
               + P               + +   +  G +    +  +      TK+  +   ++ 
Sbjct: 213 DGEVSEPIAATNMQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKIAEETKLADQTFVSKV 272

Query: 305 VKKLRSNAIIHY 316
           +      A +  
Sbjct: 273 ISDELKAANVKI 284


>gi|256419787|ref|YP_003120440.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chitinophaga
           pinensis DSM 2588]
 gi|256034695|gb|ACU58239.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chitinophaga
           pinensis DSM 2588]
          Length = 702

 Score = 42.4 bits (97), Expect = 0.094,   Method: Composition-based stats.
 Identities = 26/256 (10%), Positives = 64/256 (25%), Gaps = 9/256 (3%)

Query: 26  CIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETL 85
             +  VS    +++           ++D +++  I   K      E  K  V  L    +
Sbjct: 205 ASISYVSVPYASIADSTV------KVSDSELNSFINSHKELFKVEESRK--VDYLAFNVI 256

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
                  + +    +           +        S                    ++  
Sbjct: 257 PSAADTAATLKVLMDAKQELDTISNNDIAAFINRNSDLPYYDSYISKSALMVPQKDTLVT 316

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
             V   F   Y N  +       +       +     V               + RI   
Sbjct: 317 LPVGAVFGPYYDNNLIVYAKMIDRKTLPDSVKVRHILVATQNQQGGGLPDSLAKARIDSI 376

Query: 206 EESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQ 264
           E +          +E++   +    + G+      +D   +F++   +          T 
Sbjct: 377 ERAVKGGADFKALVEQYTDDVRSKPTGGEYDVTPSTDFLKEFKDFALEKGKGAIGVVKTA 436

Query: 265 KGVEYIAICDKRDLGG 280
            G   I + +++++G 
Sbjct: 437 AGYHLIEVLEQKNIGS 452


>gi|308812929|ref|XP_003083771.1| Chain A, Solution Structure Of Pin1at From Arabidopsis Thaliana
           (ISS) [Ostreococcus tauri]
 gi|116055653|emb|CAL57738.1| Chain A, Solution Structure Of Pin1at From Arabidopsis Thaliana
           (ISS) [Ostreococcus tauri]
          Length = 228

 Score = 42.4 bits (97), Expect = 0.094,   Method: Composition-based stats.
 Identities = 7/51 (13%), Positives = 14/51 (27%), Gaps = 1/51 (1%)

Query: 221 KFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
             A +  +   G         +   F++     +    +    T  GV  I
Sbjct: 174 DDARRFDNQRGGDLGEFGRGQMQKPFEDATFALAVGEMSGVVDTDSGVHVI 224


>gi|322380902|ref|ZP_08054980.1| peptidylprolyl isomerase [Helicobacter suis HS5]
 gi|321146670|gb|EFX41492.1| peptidylprolyl isomerase [Helicobacter suis HS5]
          Length = 481

 Score = 42.4 bits (97), Expect = 0.096,   Method: Composition-based stats.
 Identities = 36/377 (9%), Positives = 86/377 (22%), Gaps = 70/377 (18%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M S +       +  +    +  +   +      S++M++     +   +I++ ++ +  
Sbjct: 1   MISWMQKHKKYLVVTIWISTIAFVAAGMIGWGQYSFSMANGNVAKVGRVLISEEELDREH 60

Query: 61  ALLKLQKINGE---------------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
             L                       LE  A+  LI + L K      G+    + V   
Sbjct: 61  RRLLDIYSQSIPNFKDLSEKEVKALGLEHNALTLLINQALLKNLALDLGLGVSGSEVIAE 120

Query: 106 FVQH--ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
             +    +N G   E     + ++        +     ++    +   F      LE E 
Sbjct: 121 IQKSTAFQNEGHFDEALYKKILQENRYRPSAFEEGIKNALLLQKISALFPQAITPLEEEA 180

Query: 164 PAN------------------------------KQKMKNITVREYLIRTVLFSIPDNKLQ 193
                                            + K        Y +     +  D +  
Sbjct: 181 FLWPLRLQDQVRIEVLEPKEVVVTQQALRDYYNQHKNTYKKPPSYTLAASHITDTDIEPA 240

Query: 194 NQGFVQKRIKDAEE---SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL-------- 242
            Q  +Q   +  ++    + ++        K +                  L        
Sbjct: 241 KQEQLQAYYEKNKQVYTLQGKVQDFMQVKIKVSHDYLQEKARDLALQKYLALKNNTFKPA 300

Query: 243 ----------HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSA 290
                           +          P   + G   + +  K+   L      K  +  
Sbjct: 301 TEVITKLPYPAEIATKIETMHPGEVLKPQKYKDGWLVVKLVSKQTDQLQSFEEAKEEVRI 360

Query: 291 QNTPTKIEKHEAEYVKK 307
                +  K   +   K
Sbjct: 361 AVVEQEQRKWLKQEASK 377


>gi|260426113|ref|ZP_05780092.1| conserved hypothetical protein [Citreicella sp. SE45]
 gi|260420605|gb|EEX13856.1| conserved hypothetical protein [Citreicella sp. SE45]
          Length = 282

 Score = 42.4 bits (97), Expect = 0.096,   Method: Composition-based stats.
 Identities = 8/64 (12%), Positives = 21/64 (32%), Gaps = 2/64 (3%)

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
            +   T P  +  G   + +   +         ++  + A     +++     + + LRS
Sbjct: 208 PEGQWTGPVESGYGRHLVRLDAMQPGYLPPLEVVRDRVLADWRAQEMKVAREAFTEALRS 267

Query: 311 NAII 314
              I
Sbjct: 268 RYRI 271


>gi|257894185|ref|ZP_05673838.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,408]
 gi|257830564|gb|EEV57171.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,408]
          Length = 340

 Score = 42.4 bits (97), Expect = 0.097,   Method: Composition-based stats.
 Identities = 33/320 (10%), Positives = 86/320 (26%), Gaps = 45/320 (14%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +   +K  T          V  ++  S   +++   T+ G  IT  D      L      
Sbjct: 1   MQILMKKNTIILAATSALAVLTLAACS-GDTNKDIATMKGGTITVSDFYDEAKL------ 53

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
                +  VQ +I+  +      K G       V+  + + A++ G + E        Q 
Sbjct: 54  -ESSNQSLVQRMIIYKV---FNNKYGDKVTDKQVDAEYDKQAKSLGDTFES-------QL 102

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
               + K             +          + ++          +    +   ++    
Sbjct: 103 EAAGYTKDTYKEYIRNNLAFEAGLKAHVDITDDDLKTAW-----KSFHPEVEAQIIKLSS 157

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF- 246
           +++ ++                         +  ++        GK ++   +   P   
Sbjct: 158 EDEAKDVKKSA----------DDGDDFSKLAKDKSTDTETKEDGGKVKFDSTTTTIPAEV 207

Query: 247 -QNLLKKSQNNTTNPYVTQK------GVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKI- 297
            +   K      ++   T            + +   ++ G ++   K  L    T TK+ 
Sbjct: 208 KEAAFKLKDGEISDVITTTNPTSYATEYYVVKMVKNQNKGNDMDKYKDQLKDIATETKLS 267

Query: 298 -EKHEAEYVKKLRSNAIIHY 316
                 + + +   +A +  
Sbjct: 268 DNAFTTKVIGEELKDANVKI 287


>gi|332665327|ref|YP_004448115.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332334141|gb|AEE51242.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 702

 Score = 42.4 bits (97), Expect = 0.097,   Method: Composition-based stats.
 Identities = 23/266 (8%), Positives = 64/266 (24%), Gaps = 16/266 (6%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           ++   ++  D       LK      + ++ A +  I     + +  K+      N +   
Sbjct: 210 VDNAEVSVSD-EDYANYLKENPGLFKYDEEARK--IGLVTFEVKPTKADSLAQRNKIVGL 266

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
                +    +     +     G             SI+   +   F       E     
Sbjct: 267 INDWRQAPNDTVFVEQNLGTIDGAYVKREGLLQFADSIFNLPIGGIFGPYV---EGNAYR 323

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
             + +    + + +    +   PD          +                +   +F   
Sbjct: 324 AVKLLDRKVIPDSVKSRHILIRPDAVTPLAVIKTRLDSIKNVIETGKATFADMALRFGQD 383

Query: 226 IHDVSIGKAQYLLESDLHPQFQN--LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIA 283
               + G   Y     +   + +    +  Q        TQ G   + +  K+       
Sbjct: 384 GTSTTGGDLGYTALGGMVKPYNDLIFFQAEQGKLYT-VETQFGAHLVEVTGKKVTSNASG 442

Query: 284 LK-----AYLS--AQNTPTKIEKHEA 302
           ++       +    +    + E+ + 
Sbjct: 443 VRVAYIGEVIKPSKETENRRFEEAQR 468


>gi|167519250|ref|XP_001743965.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777927|gb|EDQ91543.1| predicted protein [Monosiga brevicollis MX1]
          Length = 111

 Score = 42.4 bits (97), Expect = 0.099,   Method: Composition-based stats.
 Identities = 10/80 (12%), Positives = 17/80 (21%), Gaps = 1/80 (1%)

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH-PQFQNLLK 251
                 +   K  E+      K        +        G        ++  P F  +  
Sbjct: 29  SKVQATEMLTKFREQIVSGEKKFEEIAAVESDCGSAAQGGDIGTFTAEEIQKPFFDAVAG 88

Query: 252 KSQNNTTNPYVTQKGVEYIA 271
              N  +    T  G   I 
Sbjct: 89  LEVNEISQVVHTDSGSHIIQ 108


>gi|322378577|ref|ZP_08053017.1| conserved hypothetical secreted protein [Helicobacter suis HS1]
 gi|321148985|gb|EFX43445.1| conserved hypothetical secreted protein [Helicobacter suis HS1]
          Length = 481

 Score = 42.4 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 36/377 (9%), Positives = 86/377 (22%), Gaps = 70/377 (18%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M S +       +  +    +  +   +      S++M++     +   +I++ ++ +  
Sbjct: 1   MISWMQKHKKYLVVTIWISTIAFVAAGMIGWGQYSFSMANGNVAKVGRVLISEEELDREH 60

Query: 61  ALLKLQKINGE---------------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
             L                       LE  A+  LI + L K      G+    + V   
Sbjct: 61  RRLLDIYSQSIPNFKDLSEKEVKALGLEHNALTLLINQALLKNLALDLGLGVSGSEVIAE 120

Query: 106 FVQH--ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
             +    +N G   E     + ++        +     ++    +   F      LE E 
Sbjct: 121 IQKSTAFQNEGHFDEALYKKILQENRYRPSAFEEGIKNALLLQKISALFPQAITPLEEEA 180

Query: 164 PAN------------------------------KQKMKNITVREYLIRTVLFSIPDNKLQ 193
                                            + K        Y +     +  D +  
Sbjct: 181 FLWPLRLQDQVRIEVLEPKEVVVTQQALRDYYNQHKNTYKKPPSYTLAASHITDTDIEPA 240

Query: 194 NQGFVQKRIKDAEE---SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL-------- 242
            Q  +Q   +  ++    + ++        K +                  L        
Sbjct: 241 KQEQLQAYYEKNKQVYTLQGKVQDFMQVKIKVSHDYFQEKARDLALQKYLALKNNTFKPA 300

Query: 243 ----------HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSA 290
                           +          P   + G   + +  K+   L      K  +  
Sbjct: 301 TEVITKLPYPAEIATKIETMHPGEVLKPQKYKDGWLVVKLVSKQTDQLQSFEEAKEEVRI 360

Query: 291 QNTPTKIEKHEAEYVKK 307
                +  K   +   K
Sbjct: 361 AVVEQEQRKWLKQEASK 377


>gi|197117512|ref|YP_002137939.1| hypothetical protein Gbem_1123 [Geobacter bemidjiensis Bem]
 gi|197086872|gb|ACH38143.1| conserved hypothetical protein [Geobacter bemidjiensis Bem]
          Length = 613

 Score = 42.4 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/269 (9%), Positives = 61/269 (22%), Gaps = 38/269 (14%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
             ++N E IT GD+ K +  L  +    +            + KK  +E      +   V
Sbjct: 97  LASVNDEKITLGDLQKALMSLHEKMTEEK----------EVSAKKNFMEPLERLINVKLV 146

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                    +     +        Q +    F + +         V+ ++      ++++
Sbjct: 147 VQEAKNMELDRQDEIKSNLEKFADQQLRQVLFLERVKDIKPDERKVQKEYRDTIKEMKLK 206

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                                           +  V K   +  +   +  +  +K  K 
Sbjct: 207 SLIF---------------------------KKDTVAKAFIEELKHGKKFDELRDKALKD 239

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEI 282
                     +      +        L        +       G     + + R +    
Sbjct: 240 GKAETAGQDEQQYATNAALGPVVSAGLADVKAGGISPIIEIMNGFLVAKVEEIRYV-DNP 298

Query: 283 ALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           A      ++            Y  +L   
Sbjct: 299 AGLEQARSKVLSQMKLDSLKAYKAELVKK 327



 Score = 41.6 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/191 (11%), Positives = 55/191 (28%), Gaps = 8/191 (4%)

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                 +      ++   ++            EI    +K  +       +  +      
Sbjct: 424 EYLKRIEDHKTTVLFGAFIEKVIKPDVTFTVAEIKDYYEKHISEYAAPEKM-QIQGIAFT 482

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
            K   Q  + K  +  + + LR   D    +  A  +   +           +    Q +
Sbjct: 483 KKDDAQKAIDKLREGVDFAWLRNNADGQVAKN-ARDLLQFNEEAL---TLQSMPEPMQKV 538

Query: 250 LKKSQNNTTNPYVTQKGV-EYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVK 306
           LK +       Y + +G    + + +K +        +K  +  +     + +   ++ K
Sbjct: 539 LKDAHKGDYRLYESPEGYSYALFVKEKEEAKARPLEEVKDEVGQKVAWLNLTQDIEKWFK 598

Query: 307 KLRSNAIIHYY 317
           KLR    +  Y
Sbjct: 599 KLREAYPVKIY 609


>gi|152988040|ref|YP_001345424.1| putative lipoprotein [Pseudomonas aeruginosa PA7]
 gi|150963198|gb|ABR85223.1| lipoprotein, putative [Pseudomonas aeruginosa PA7]
          Length = 428

 Score = 42.4 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/171 (9%), Positives = 48/171 (28%), Gaps = 14/171 (8%)

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
                K  + + E    +   +   V +     +  +   +  +    +QK +   E  R
Sbjct: 265 RQLAAKVSDQDAEAYYRRNLERYRNVAQVQAVHIRLADQASADRVYAELQKGLAFDEAVR 324

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLE--SDLHPQFQNLLKKSQNNTTNPYVTQKGV 267
                        A        G    +      L    +  L +  +  + P       
Sbjct: 325 RH---------SLADDRDRDPPGDLGLIRPQDGQLDLLRKTALIQKADTLSQPMRIDGAF 375

Query: 268 EYIAI---CDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           E + +    D++    + +++  ++      ++       ++ L + A + 
Sbjct: 376 EIVRVRSREDRQLPLSDRSVRFEVNQAVARERLAAQFETQLRGLLAGARVE 426


>gi|167525727|ref|XP_001747198.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774493|gb|EDQ88122.1| predicted protein [Monosiga brevicollis MX1]
          Length = 198

 Score = 42.4 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 9/119 (7%), Positives = 22/119 (18%), Gaps = 24/119 (20%)

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
           +    R       +   + +    + IK   E+  +        E  +        G   
Sbjct: 76  KHRDSRRPSSWRQNTITRTKAEAIEIIKRHREAIAQGADFAKIAETESDCSSAKRGGDLG 135

Query: 236 YLLESDL------------------------HPQFQNLLKKSQNNTTNPYVTQKGVEYI 270
                 +                            +          ++   T  G+  I
Sbjct: 136 AFGRGQMQTTDVMTPGSHTTCLASPCFPANAEAFEKAAFALKVGELSDLVDTDSGIHII 194


>gi|71650018|ref|XP_813716.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70878626|gb|EAN91865.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 421

 Score = 42.0 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 9/77 (11%), Positives = 20/77 (25%), Gaps = 1/77 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ- 254
               +     + S   L +    + +++        G    +       +F         
Sbjct: 342 AEAIRARHGDQTSVWSLDEFTAVVREYSECGSAKRDGDLGMVESGTYTEKFGAAAFSLGC 401

Query: 255 NNTTNPYVTQKGVEYIA 271
              + P  T+ GV  I 
Sbjct: 402 GMVSAPVETELGVHLIY 418


>gi|85709482|ref|ZP_01040547.1| hypothetical protein NAP1_11393 [Erythrobacter sp. NAP1]
 gi|85688192|gb|EAQ28196.1| hypothetical protein NAP1_11393 [Erythrobacter sp. NAP1]
          Length = 262

 Score = 42.0 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 7/65 (10%), Positives = 19/65 (29%), Gaps = 1/65 (1%)

Query: 253 SQNNTTNPYVTQKGVEYIAICDKR-DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            ++    P  +  G   + +  +        A++  +       +    +    + LRS 
Sbjct: 196 PRDEWQGPVPSGFGWHLVRLTQRTAKDPSFDAVREEVENDWRSAETAARKDRAFEVLRSA 255

Query: 312 AIIHY 316
             I  
Sbjct: 256 YRIEI 260


>gi|134302065|ref|YP_001122034.1| hypothetical protein FTW_1101 [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049842|gb|ABO46913.1| hypothetical protein FTW_1101 [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 476

 Score = 42.0 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/161 (8%), Positives = 40/161 (24%), Gaps = 6/161 (3%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M       L      +    +  IF I  +  + +   S      +    I+     +  
Sbjct: 1   MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSRAYVAKVGDNEISSQQFQQYA 60

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
                     E ++  + ++I + L   + ++  I      +      +        +  
Sbjct: 61  Q----SATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAIFTNPMFF--DKDGK 114

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
            S    + +           Q +  ++          +  +
Sbjct: 115 FSAEKLKQVVAYLGGMDKLEQILAQNIQATIIPKTIVDTSI 155


>gi|293115632|ref|ZP_05792424.2| putative PPIC-type PPIASE domain protein [Butyrivibrio crossotus
           DSM 2876]
 gi|292809199|gb|EFF68404.1| putative PPIC-type PPIASE domain protein [Butyrivibrio crossotus
           DSM 2876]
          Length = 327

 Score = 42.0 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/312 (9%), Positives = 77/312 (24%), Gaps = 21/312 (6%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD---ISKRIAL 62
           F  L   I  L    +L+I          +               I+      +      
Sbjct: 4   FYMLKHKIAGLLAVLILLISATGCTNIRFTTGTGKNRFAVCGNYSISVQAADILISERKY 63

Query: 63  LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
                 N E+   +V ++ +E     +I+                +  +      E+   
Sbjct: 64  SYEDLFNNEIWNRSVGDMTMEEYLLSDIKTLAGNV---IYLNMMAEDMQINLTGDEEERI 120

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
               +   ++       ++ +   ++  +        +++I          T     I  
Sbjct: 121 SEYAEDYAEDSGFDKADVEELLQMLLIAEKSFYAMTEDVDIE-------VSTDEARTISV 173

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
                  N        + +  +A +            E+ +      SI   ++      
Sbjct: 174 QYMFFAVNDDVTDRMAENKASEALQKIEDGTDFLTLAEEQSDD----SIHSMEFYKGIYD 229

Query: 243 HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEA 302
                   K      ++   T+ G   I   +          K+ +  +    + E+  A
Sbjct: 230 KDFETAAYKLETGQVSSVVETKYGYYIIKCINDNIESDTAKRKSEIVLK----RREELFA 285

Query: 303 EYVKKLRSNAII 314
           +  ++L     I
Sbjct: 286 DKFRQLAEKKDI 297


>gi|323138293|ref|ZP_08073365.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocystis sp.
           ATCC 49242]
 gi|322396545|gb|EFX99074.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocystis sp.
           ATCC 49242]
          Length = 635

 Score = 42.0 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/334 (8%), Positives = 83/334 (24%), Gaps = 54/334 (16%)

Query: 1   MTSKVFTSLSDFIKLLTTYF----VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI 56
           M   +  +  ++I           +++ F I  +        +SR+   +    ++    
Sbjct: 1   MLEGLRVASQNWIGRTIMAVVMGVIVVSFAIWGVGDVFRGMTTSRLV-KVGSGEVSVDSF 59

Query: 57  SKRIAL-------------LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
                                 +     L+   ++ LI E    Q+  + G+     T  
Sbjct: 60  RNAYQNELRRIQQRLRRAVTNQEARQAGLDLQVLERLITEVALDQKARQLGLASSDETTQ 119

Query: 104 YFFVQHARNTGLSAE---DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
               +     G   +   +    + +               +    ++ +          
Sbjct: 120 QLLAKEKVLQGPDGKFDVERFKQIARDAGFTERGFVADQKSAYLRKLLTDLVTNGVEPPR 179

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
           + I A   + +N +         + +       +   ++K   + E++            
Sbjct: 180 LMIEA-IHRFRNESRTIDYFVLPVSAAGPASTPSDEELKKYFDEREQTFRAKEYRKLTAL 238

Query: 221 KFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
             +      S+GK   + E ++   ++    +                            
Sbjct: 239 VVSPT----SVGKPGEVTEDEVRKLYEESKARRFG------------------------- 269

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
               K  +       K +K   + + +L+    I
Sbjct: 270 -TPEKRDVRQIVL--KTDKEAEDALARLKGGMDI 300


>gi|329576836|gb|EGG58321.1| PPIC-type PPIASE domain protein [Enterococcus faecalis TX1467]
          Length = 342

 Score = 42.0 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/312 (8%), Positives = 73/312 (23%), Gaps = 39/312 (12%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +L     + + S  + +  S+   T+ G  IT  D   +I             + 
Sbjct: 1   MKKKLILAAAGAMAVFSLAACSSGSKDIATMKGSTITVDDFYNQIK-------EQSTSQQ 53

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           A  ++++  + +++        D         ++        E                +
Sbjct: 54  AFSQMVIYKVFEEKYGDKVTDKD-------IQKNFDEAKEQVEAQGGKFSDALKQAGLTE 106

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    Q                  + ++              +        I      + 
Sbjct: 107 KTFKKQLKQRAAYDAGLKAHLKITDEDLKTAW--------ASFHPEVEAQIIQVASEDDA 158

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKKS 253
             V+K      E            EK          GK ++   +   P    +   K  
Sbjct: 159 KAVKK------EITDGGDFTKIAKEKSTDAATKKDGGKIKFDSHAATVPAEVKEAAFKLK 212

Query: 254 QNNTTNPYVTQK------GVEYIAICDKRDLGGE-IALKAYLSAQNTPTKI--EKHEAEY 304
               + P               + +   +  G +    +  +      TK+  +   ++ 
Sbjct: 213 DGEVSEPIAATNMQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKIAEETKLADQTFVSKV 272

Query: 305 VKKLRSNAIIHY 316
           +      A +  
Sbjct: 273 ISDELKAANVKI 284


>gi|258509270|ref|YP_003172021.1| peptidylprolyl isomerase [Lactobacillus rhamnosus GG]
 gi|257149197|emb|CAR88170.1| Endopeptidase maturation protein prtM [Lactobacillus rhamnosus GG]
 gi|259650551|dbj|BAI42713.1| peptidylprolyl isomerase [Lactobacillus rhamnosus GG]
          Length = 300

 Score = 42.0 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 82/288 (28%), Gaps = 38/288 (13%)

Query: 14  KLLTTYFVLIIFC--IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
           K L   F+  +    I+ +   +S    S    T +G  +T     K +           
Sbjct: 3   KKLRVPFLAAMMASSIMLLSGCQSKQADSTTVATYSGGQVTQASFYKELK-------QSP 55

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
             K  +  L++     +   KS  T   +                 E+F+SFL + G   
Sbjct: 56  TTKTVLANLLIYRALNKAYGKSVSTKSVDNTYN------SYKNEYGENFTSFLSQNGFSK 109

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
           + F+Q +    +    +K     K  N +++              +  ++ +L S     
Sbjct: 110 SSFRQSIRTNLLSEVALKKL--KKVTNSQLKTAWKTY------QPKVTVQHILTSDESTA 161

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYLLES-DLHPQFQNL 249
            Q    +                     + ++         GK  +   S  L   F++ 
Sbjct: 162 KQVISDLAA-----------GKDFTTLAKTYSIDTSTKDKGGKVSFESSSKSLDSTFKDA 210

Query: 250 LKK-SQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT 295
             K      T  P     G E I + +    G     K  L+A     
Sbjct: 211 AYKLKNGEYTQSPVKVTNGYEVIKMIEHPAKGTFSDSKKALTASVYSK 258


>gi|315452770|ref|YP_004073040.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter felis ATCC
           49179]
 gi|315131822|emb|CBY82450.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter felis ATCC
           49179]
          Length = 482

 Score = 42.0 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 43/386 (11%), Positives = 107/386 (27%), Gaps = 76/386 (19%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
             K    L   I + T  F+          S+   + S      +   +IT  ++     
Sbjct: 1   MQKHKKYLVVTIWISTIAFIAAGMIGWGQYSFSMASGS---VAKVGRVLITSEELEMERK 57

Query: 62  LL---------------KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF 106
            L               + Q     LEK A++ LI +   K      G+      +    
Sbjct: 58  RLVDAYSQSIPNFKDLDEKQIAAMGLEKTALRMLINQAYLKNLALDLGLGVSDAEIATEI 117

Query: 107 VQHA---RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV---------------- 147
            + A   ++     + +   L         F++ +    I   V                
Sbjct: 118 QKSALFQKDGHFDVDLYKKVLQDNHYRPALFEENVKNALILQKVSGLFPSATTPLEKEAF 177

Query: 148 -----VKNDFMLKY----------GNLEMEIPANKQKMKNITVREYL------------- 179
                +++   +K               ++   ++ K        Y              
Sbjct: 178 TYPLKIQDRISIKILEASHAPIQLEESALKAYYDQHKNTYKKPTRYTLQTLWIKPKTATL 237

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA---SKIHDVSIGKAQY 236
            +++L     ++  N    Q +++  E+++ R+  D N+ +       +   +  G    
Sbjct: 238 DQSILRKYYQDRKSNYTDAQGKLETFEKAKDRVIHDYNQAQAKENALKQYLALKRGNLNP 297

Query: 237 LLESDLHPQFQNLLKKS-----QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ 291
             ES     +   +              P   ++G   + + +K    G +       ++
Sbjct: 298 KKESFTDLPYGTDIDTKIIAMQPGEVLKPLEYKEGYLVVKLVEK--SSGLLKSFQEAKSE 355

Query: 292 NTPTKIEKHEAEYVKKLRSNAIIHYY 317
              T   + + +++K+      +  +
Sbjct: 356 IMATLQAEAQQKWLKQEAQK-QVKNF 380


>gi|312900280|ref|ZP_07759592.1| putative foldase protein PrsA [Enterococcus faecalis TX0470]
 gi|311292641|gb|EFQ71197.1| putative foldase protein PrsA [Enterococcus faecalis TX0470]
          Length = 342

 Score = 42.0 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/312 (8%), Positives = 73/312 (23%), Gaps = 39/312 (12%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +L     + + S  + +  S+   T+ G  IT  D   +I             + 
Sbjct: 1   MKKKLILAAAGAMAVFSLAACSSGSKDIATMKGSTITVDDFYNQIK-------EQSTSQQ 53

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           A  ++++  + +++        D         +         E                +
Sbjct: 54  AFSQMVIFKVFEEKYGDKVTDKD-------IQKSFDEAKEQVEAQGGKFSDALKQAGLTE 106

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    Q                  + ++              +        I      + 
Sbjct: 107 KAFKKQLKQRAAYDAGLKAHLKITDEDLKTAW--------ASFHPEVEAQIIQVASEDDA 158

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKKS 253
             V+K      E            EK          GK ++  ++   P    +   K  
Sbjct: 159 KAVKK------EITDGGDFTKIAKEKSTDAATKKDGGKIKFDSQATTVPAEVKEAAFKLK 212

Query: 254 QNNTTNPYVTQK------GVEYIAICDKRDLGGE-IALKAYLSAQNTPTKI--EKHEAEY 304
               + P               + +   +  G +    +  +      TK+  +   ++ 
Sbjct: 213 DGEVSEPIAATNMQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKIAEETKLADQTFVSKV 272

Query: 305 VKKLRSNAIIHY 316
           +      A +  
Sbjct: 273 ISDELKAANVKI 284


>gi|307310586|ref|ZP_07590233.1| putative peptidyl-prolyl cis-trans isomerase protein
          [Sinorhizobium meliloti BL225C]
 gi|307320968|ref|ZP_07600375.1| putative peptidyl-prolyl cis-trans isomerase protein
          [Sinorhizobium meliloti AK83]
 gi|306893342|gb|EFN24121.1| putative peptidyl-prolyl cis-trans isomerase protein
          [Sinorhizobium meliloti AK83]
 gi|306899696|gb|EFN30322.1| putative peptidyl-prolyl cis-trans isomerase protein
          [Sinorhizobium meliloti BL225C]
          Length = 630

 Score = 42.0 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 1  MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI---- 56
          M   +  +    +       +++ F +    +       + +  T+    ++  D     
Sbjct: 1  MLDSLRNAAQTRVVKGLLALLILSFMVWGGQTLMVPNTPNAVV-TVGDVKVSASDFRLAY 59

Query: 57 SKRIALLKLQKINGELEKIA 76
           +++ALL  Q       + A
Sbjct: 60 ERQVALLSRQLGTPLSRQQA 79


>gi|15965412|ref|NP_385765.1| putative peptidyl-prolyl cis-trans isomerase protein
          [Sinorhizobium meliloti 1021]
 gi|15074593|emb|CAC46238.1| Putative peptidyl-prolyl cis-trans isomerase [Sinorhizobium
          meliloti 1021]
          Length = 630

 Score = 42.0 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 9/80 (11%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 1  MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI---- 56
          M   +  +    +       +++ F +    +       + +  T+    ++  D     
Sbjct: 1  MLDSLRNAAQTRVVKGLLALLILSFMVWGGQTLMVPNTPNAVV-TVGDVKVSASDFRLAY 59

Query: 57 SKRIALLKLQKINGELEKIA 76
           +++ALL  Q       + A
Sbjct: 60 ERQVALLSRQLGTPLSRQQA 79


>gi|71419036|ref|XP_811046.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70875666|gb|EAN89195.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 422

 Score = 42.0 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 9/77 (11%), Positives = 20/77 (25%), Gaps = 1/77 (1%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ- 254
               +     + S   L +    + +++        G    +       +F         
Sbjct: 343 AEAIRARHGDQTSVWSLDEFTAVVREYSECGSAKRDGDLGMVESGTYTDKFDAAAFSLGC 402

Query: 255 NNTTNPYVTQKGVEYIA 271
              + P  T+ GV  I 
Sbjct: 403 GMVSAPVETELGVHLIY 419


>gi|294782675|ref|ZP_06748001.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 1_1_41FAA]
 gi|294481316|gb|EFG29091.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 1_1_41FAA]
          Length = 563

 Score = 42.0 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 65/233 (27%), Gaps = 8/233 (3%)

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
                  +    +         + A+N        +    ++G+  N     ++    + 
Sbjct: 236 LDLAKIMATFMINQKATKEQAEELAKNMLAKQIKVAKMAKEKGVKVNEELDLMSQLQEYT 295

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
             +      +    + E+ +     K+           L  I     +    V K   + 
Sbjct: 296 VGLSEKLREEIKPTDAELESFFNANKSRYNIPETADAKLIFITVKSTKEDDAVAKAEAEK 355

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN--TTNPYVT 263
             + L       K +   +    +         +  +  +F+  LK   +N        T
Sbjct: 356 LLAELTPENFSEKGKSIGNNQDIIY-QDLGTFGKQAMVKEFEEALKDVPSNTVINKVIKT 414

Query: 264 QKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS-NAIIH 315
           + G   + +  K++   +     ++     P   EK   E ++KL    A I 
Sbjct: 415 KFGYHVVYV--KKNDNNQQWSAEHILIVPYP--SEKTVEEKLEKLNKLKADIE 463


>gi|302657689|ref|XP_003020561.1| hypothetical protein TRV_05348 [Trichophyton verrucosum HKI 0517]
 gi|291184406|gb|EFE39943.1| hypothetical protein TRV_05348 [Trichophyton verrucosum HKI 0517]
          Length = 205

 Score = 42.0 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 7/121 (5%), Positives = 24/121 (19%), Gaps = 13/121 (10%)

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
               +    +       R   +   +        ++      +  +       +     +
Sbjct: 67  EGKIRASHLLIKHRESRRPSSWRESEITRSKDEAIEILRNHKQRIQSGEASLGDIATSES 126

Query: 224 SKIHDVSIGKA------------QYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYI 270
                   G               +    ++  +F+           ++   T  GV  I
Sbjct: 127 DCSSARKRGDLQHKAWVTDKSYSGFFGRGEMQAEFEQAAFALKVGEVSDIVETASGVHLI 186

Query: 271 A 271
            
Sbjct: 187 E 187


>gi|313904444|ref|ZP_07837821.1| hypothetical protein EubceDRAFT_0536 [Eubacterium cellulosolvens 6]
 gi|313470780|gb|EFR66105.1| hypothetical protein EubceDRAFT_0536 [Eubacterium cellulosolvens 6]
          Length = 376

 Score = 42.0 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/334 (8%), Positives = 79/334 (23%), Gaps = 36/334 (10%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRT--TINGEVI-------------------- 51
           K+       ++ C + + +          +    +NGE I                    
Sbjct: 3   KVKAKAVTAVLACTMAMTTLAGCGKVDGTQAALIVNGETINLGTAEFYLRYQQAQSTAMM 62

Query: 52  ------TDGDISKRIALLKLQKINGELEKIAVQEL---IVETLKKQEIEKSGITFDSNTV 102
                 T+   ++  +       +        + +   IV+ +  +   +      S+ +
Sbjct: 63  ANYGMSTESVWAQEYSGATSTSESKTYGDSLKESIRKNIVQGVILKSHAEEYDVTISDNL 122

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                + A+ T  + ++    +           +    Q +    +  D      + E  
Sbjct: 123 KEEIKKAAKETYETNKEAMDKIGTTEGDIETVLELSTYQRLMYYPMAKDVDTNVSDEEAA 182

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                    ++T  +           D K   +  ++  ++  + S      D   L   
Sbjct: 183 ESTITYAKISLTKNDSETGGSETMTDDEKKAAKKLLEDLLEKVKTSSDPAKADVKSLASQ 242

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT-NPYVTQKGVEYIAICDKRDLGGE 281
                +VS        ++                       T      + +    D   +
Sbjct: 243 LDDSIEVSEQSFTKDSQALPEAVLSEATALKDGELHDGIIETDDAYYIVRM----DKVLD 298

Query: 282 IALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
                         + E    + V+K    A I 
Sbjct: 299 REATDSNKKTIIEQRRETAYNDLVEKWYKEAKIK 332


>gi|186683552|ref|YP_001866748.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nostoc punctiforme
           PCC 73102]
 gi|186466004|gb|ACC81805.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nostoc punctiforme
           PCC 73102]
          Length = 242

 Score = 42.0 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/254 (12%), Positives = 74/254 (29%), Gaps = 24/254 (9%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           IT+ DI  ++ L              V+++I   L     E++GI  +   +     Q  
Sbjct: 7   ITNEDILHQVKLSCKI-------PEIVEQIITRKLIIAAAEEAGIKVEVEELQKAADQIR 59

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
               L + D +     Q +  +        +  + +++             ++     + 
Sbjct: 60  LVNKLDSADRTW----QWLEKHSLSLDDFEEIAYLNLISGKLTNHL--FADKVEPYFIEN 113

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS 230
           +   V   +   VL         ++    +     +E  +      +K  +         
Sbjct: 114 QLDYVGVVMYEVVL--------DDEDLALELFYAIKEGEMSFYDVAHKFIQ--DTELRRK 163

Query: 231 IGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS 289
            G    +   DL P+    +          P VT KG+  I + +         L+  + 
Sbjct: 164 GGYLGIVRRKDLKPEISAAVFSAKPPQVIKPIVTSKGIHLILVEELIQPDLNEKLRTNII 223

Query: 290 AQNTPTKIEKHEAE 303
                  + +  A+
Sbjct: 224 FNLFSHWLNQQIAQ 237


>gi|309803457|ref|ZP_07697551.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners
           LactinV 11V1-d]
 gi|308164466|gb|EFO66719.1| putative peptidylprolyl isomerase PrsA1 [Lactobacillus iners
           LactinV 11V1-d]
          Length = 238

 Score = 42.0 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/201 (10%), Positives = 53/201 (26%), Gaps = 5/201 (2%)

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
             +         ++     ++                 +  + +  +   +     + + 
Sbjct: 1   MIINRTLQQQYGSQVSKKKVNTAYDNARKQYGARFEMVLQQNGMTPEAYKESIQTNLLLQ 60

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS 224
           A  + +K IT  +       +             +   K   E   +     +  +K+++
Sbjct: 61  AALKDIKPITKAQEKKAWKEYQPKVRVQHILVEKEDTAKKVIEELGKGASFKDLAKKYST 120

Query: 225 KI-HDVSIGKAQYLLESD---LHPQFQNLLKKSQNNTTN-PYVTQKGVEYIAICDKRDLG 279
                 + GK +    SD        +   K      T  P  TQ G   I +      G
Sbjct: 121 DTGTSKNAGKIEPFDSSDTTLDADFKEAAFKLKTGEYTKKPVKTQFGYHIIKMIKHPSKG 180

Query: 280 GEIALKAYLSAQNTPTKIEKH 300
              + K+ + A+      +  
Sbjct: 181 SFQSHKSEIIARIYQKMAQDQ 201


>gi|95929442|ref|ZP_01312185.1| Sporulation related [Desulfuromonas acetoxidans DSM 684]
 gi|95134558|gb|EAT16214.1| Sporulation related [Desulfuromonas acetoxidans DSM 684]
          Length = 387

 Score = 42.0 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/199 (8%), Positives = 42/199 (21%), Gaps = 6/199 (3%)

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
             A++EL +   K  E +   +      +    +  A        + +            
Sbjct: 80  DQAIEELQLAIDKAPEEDFLHMEMGVFYLAAGRLPLAHQEFTRVLELNPGFSYGYYYLGE 139

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
               L   ++    +     L     ++E               +    +          
Sbjct: 140 VLFRLGEYNLSSMALVIAEKLGLPGFDLERKLTDLGWVLPEKPWHCEPHIYHLRRITLPT 199

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS 253
                Q       +             +F++     S G    +  + +   F   L   
Sbjct: 200 LTQARQ-----VMQRLEDGELFEELAREFSTGSEAQSGGYVGGISLTSMPENFSRELAGR 254

Query: 254 Q-NNTTNPYVTQKGVEYIA 271
              +      +  G   + 
Sbjct: 255 PCYSPAILLESSDGYHIVQ 273


>gi|307565745|ref|ZP_07628214.1| PPIC-type PPIASE domain protein [Prevotella amnii CRIS 21A-A]
 gi|307345571|gb|EFN90939.1| PPIC-type PPIASE domain protein [Prevotella amnii CRIS 21A-A]
          Length = 385

 Score = 42.0 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/276 (7%), Positives = 62/276 (22%), Gaps = 31/276 (11%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKS 93
           ++ A SS +  +ING+V+T  +             +  +   A Q  + +       E  
Sbjct: 15  QAIAQSSSVVMSINGKVVTREEFEYAYKKNNKGSQHISVTAFAKQYAVYKQKVAAAEEAQ 74

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
                                   E+  +++          +           ++   + 
Sbjct: 75  LDKLS------SLNNDIDVLLSHKEEPKTYIKDNFKSTPFEQNAN--------LLYRIYN 120

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
            +                N           L     +    +  +         +     
Sbjct: 121 DEIN--------------NNGGLFRYGEIFLSIKQHSTAYEEDKIHLLADSIYIALQHGD 166

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAIC 273
                 +K+++               + L    + L          P  +  G+  + + 
Sbjct: 167 NFETLAKKYSN--RKEEGVFFIATKNNMLEDVEKVLSTMKVGEICRPISSPFGLHILKLI 224

Query: 274 DKRDLGGEIALKAY-LSAQNTPTKIEKHEAEYVKKL 308
            +        ++   +         ++   +   K+
Sbjct: 225 GREKFPTYKVIRPQLILQIEKSNLRKQIIEQQQNKI 260


>gi|257458734|ref|ZP_05623857.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
 gi|257443722|gb|EEV18842.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
          Length = 485

 Score = 42.0 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 46/377 (12%), Positives = 86/377 (22%), Gaps = 69/377 (18%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI- 60
             K   SL   I + T  FV   F         +    S     +    IT+ +++ +  
Sbjct: 5   MQKHKKSLIPTIWISTIAFVGAGFVGWGAYDMNANRAGS--IARVGQISITNQELNTKYS 62

Query: 61  ------------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
                          + Q  N  L++IAV +LI E       +  GI      V  F V 
Sbjct: 63  ELYNRLSAMSDGQFTQEQAKNMHLDQIAVDQLIGEAYFLNFAKDLGIQASDKDVAEFVVS 122

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI---------------------------- 140
                   A     + +         K++                               
Sbjct: 123 SPNFQENGAFSKELYDNVVRNSGLTKKEFERNLQKVLTLEKLGKALKITPSPKIVEAFAA 182

Query: 141 -QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
            Q +   V              +    K      +      +  L +      +      
Sbjct: 183 SQLMQDKVSAEIIYADANVTFSDDELKKFWEGEKSHFMTEKKYTLGAYFVAPSKADVNET 242

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHD------------VSIGKAQYLLESDLHP--- 244
           +  K  +E R       +KL  FA    D             +      + +  L     
Sbjct: 243 ELSKFYKEHRGEYRSLDDKLLDFAEAKPDVLKDYRMDQVKKDATKDYLEIKKGKLDTNET 302

Query: 245 --------QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTP 294
                       +      +   P+  + G     +              K+  S +   
Sbjct: 303 IVATASNFPISEIEVAKPGDVIKPFEYKGGYLIAKLNGVEQPRQMSFEEAKSLASKEFET 362

Query: 295 TKIEKHEAEYVKKLRSN 311
            K ++   +  +    N
Sbjct: 363 KKRKELLEKRAQDALKN 379


>gi|123454927|ref|XP_001315212.1| PPIC-type PPIASE domain containing protein [Trichomonas vaginalis
           G3]
 gi|121897882|gb|EAY02989.1| PPIC-type PPIASE domain containing protein [Trichomonas vaginalis
           G3]
          Length = 879

 Score = 41.6 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/153 (9%), Positives = 34/153 (22%), Gaps = 17/153 (11%)

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS 230
           K+      + R         +   Q          E+              ++      +
Sbjct: 55  KHTESNHPVSRNPNRLGRPIEKTKQEAYNIIKSLYEKIISGEKTFEEIAYIWSDDGSAEN 114

Query: 231 IGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL-------GGEI 282
            G   +         F +  +    N  + P++T+ G       D  +            
Sbjct: 115 RGDLNWGAIEVYDTNFTKVAMSLKYNEISQPFLTRAGWHICKKTDGANSSYLSGGGPPFE 174

Query: 283 ALK---------AYLSAQNTPTKIEKHEAEYVK 306
                         + +     K ++    Y+K
Sbjct: 175 IEFFGAPLFMFSEPIRSYIKKIKNQEIYEYYLK 207


>gi|237716901|ref|ZP_04547382.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262405669|ref|ZP_06082219.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294644391|ref|ZP_06722154.1| putative lipoprotein [Bacteroides ovatus SD CC 2a]
 gi|229442884|gb|EEO48675.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262356544|gb|EEZ05634.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640226|gb|EFF58481.1| putative lipoprotein [Bacteroides ovatus SD CC 2a]
          Length = 330

 Score = 41.6 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/198 (10%), Positives = 57/198 (28%), Gaps = 5/198 (2%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIAL--LKLQKINGELEKIAVQELIVETLKK 87
           I         + +   +NGE I   +++ +       +     E++   +  LI + L +
Sbjct: 14  IACNTPVINKNDVVAEVNGEQILLSELASQSKQEIFDILNTAYEIKSRVLAGLIKQKLLE 73

Query: 88  QEIEKSGITFD---SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
              +K  ++ +      V         +        +     +G      K  L  +  +
Sbjct: 74  DAAKKENMSLEEFIDWFVQQKICVGQDSLKKRYGFNTQSFYVKGELIPLVKGSLEEKLSY 133

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
              +++  +    +   +    K+ +      E ++R +      N      F+     +
Sbjct: 134 QQKLRSRIVQALVDSLYQKADIKRFLYPPKQPECVVRDLCVYYRGNLDSPVSFIVASDYN 193

Query: 205 AEESRLRLPKDCNKLEKF 222
            E             + +
Sbjct: 194 CERCVQFEKTLSKLYDNY 211


>gi|167753138|ref|ZP_02425265.1| hypothetical protein ALIPUT_01409 [Alistipes putredinis DSM 17216]
 gi|167659452|gb|EDS03582.1| hypothetical protein ALIPUT_01409 [Alistipes putredinis DSM 17216]
          Length = 678

 Score = 41.6 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/254 (5%), Positives = 52/254 (20%), Gaps = 27/254 (10%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
            + + T     + ++  +   ++  I+ + +    + +      I+G  I   +  +   
Sbjct: 4   LNTLRTRFGVVLSIIIAF--ALLAFILSLKTDMGLSGNDPKVGVIDGSKIRYSEYIEVYN 61

Query: 62  LLKLQKINGELEKIAVQELIVETLKKQEIEKSGIT-----------------FDSNTVNY 104
            LK Q    E  +  + +L     +        +                        + 
Sbjct: 62  NLKDQSNISESNEEQMDQLAEMAWQTLIANHVYLPGFEKMGISVTDAEREGLISGEYYSG 121

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND--------FMLKY 156
                  +            D       + +      ++    ++               
Sbjct: 122 TMAAAFTDPRTGQYSVEGVSDFIAQATGNPQMQYMWGALVGQAMREREINKYNGLVKGGV 181

Query: 157 GNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
               +E               ++ +            +   ++      +    + P   
Sbjct: 182 YVNRLEAEEGVDAQNKTFSGSWVGKRYHDMPDSLFSVSDSEIKAYYNSHKARYEQKPSRT 241

Query: 217 NKLEKFASKIHDVS 230
                F        
Sbjct: 242 LSYVVFEVAPSAED 255


>gi|326435255|gb|EGD80825.1| peptidyl-prolyl cis-trans isomerase pin1 [Salpingoeca sp. ATCC
           50818]
          Length = 115

 Score = 41.6 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/102 (11%), Positives = 27/102 (26%), Gaps = 5/102 (4%)

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF----ASKIHDVS 230
             E   R   +   + K       ++      E + ++       E      +       
Sbjct: 11  KHEESRRCSSWKDEEGKTIRSRTKEQADDMLREFKRQIEAGEKSFEDIARVESDCGSAAQ 70

Query: 231 IGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYIA 271
            G      + ++  P F+  +K      ++   T  G   I 
Sbjct: 71  GGNIGEFTQEEIQAPFFEAFIKLKPGEMSDVVHTDSGSHIIK 112


>gi|257888119|ref|ZP_05667772.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,141,733]
 gi|257896990|ref|ZP_05676643.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           Com12]
 gi|257824173|gb|EEV51105.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,141,733]
 gi|257833555|gb|EEV59976.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           Com12]
          Length = 340

 Score = 41.6 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 33/317 (10%), Positives = 79/317 (24%), Gaps = 39/317 (12%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +   +K  +          V  ++  S   +++   T+ G  IT  D      L      
Sbjct: 1   MQTLMKKKSIILAATSALAVLTLAACS-GDTNKDIATMKGGTITVSDFYDEAKL------ 53

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
                +  VQ +I+  +      K G       V+  + + A++ G + E        Q 
Sbjct: 54  -ESSNQSLVQRMIIYKV---FNNKYGDKVTDKQVDAEYDKQAKSLGDTFES-------QL 102

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
               + K             +          + ++    +                    
Sbjct: 103 ETAGYTKDSYKEYIRNNLAFEAGLKAHVDITDDDLKTAWESFHPE------------VEA 150

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
                +     K +K + +      K        +    D    K      +      + 
Sbjct: 151 QIIKLSSEDEAKDVKKSADDGDDFSKLAEDKSTDSETKEDGGKVKFDSTTTTIPAEVKEA 210

Query: 249 LLKKSQNNTTNPYVTQKG------VEYIAICDKRDLGGEIAL-KAYLSAQNTPTKI--EK 299
             K      ++                + +   ++ G ++   K  L    T TK+    
Sbjct: 211 AFKLKDGEVSDVITATNTTSYATEYYVVKMVKNQNKGNDMDKYKDQLKEIATETKLSDNA 270

Query: 300 HEAEYVKKLRSNAIIHY 316
              + + +   +A +  
Sbjct: 271 FTTKVIGEELKDANVKI 287


>gi|261416875|ref|YP_003250558.1| hypothetical protein Fisuc_2490 [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373331|gb|ACX76076.1| hypothetical protein Fisuc_2490 [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302325951|gb|ADL25152.1| putative lipoprotein [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 693

 Score = 41.6 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 35/353 (9%), Positives = 75/353 (21%), Gaps = 74/353 (20%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA------------- 61
           +     V   FC + +    S      +   +NGE I   D +  +              
Sbjct: 1   MKKALLVFCSFCALVLSGCNSIGDKDTLVARVNGEPIFKEDYAFMMRVGNIVPNTEQMRK 60

Query: 62  -----------LLKLQKINGELEKI---------------AVQELIVETLKKQEIEKSGI 95
                           + N EL++                  Q L          ++   
Sbjct: 61  ASSSLFSRKALYTVALQKNPELKEQLEAHNVALENYLLTFVYQRLYTMDRLMYTDDELAF 120

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ-----GIGDNHFKQYLAIQSIWPDVVKN 150
            +D +   +       N      D                 +      + +      +K 
Sbjct: 121 YYDKHRDQFADSLSYMNLRDKVADAKYIESNYDSLKSYAFKHRDLSDTSREVKITYDIKE 180

Query: 151 DFML----------------KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
            F+                 KY   E EI     +      +   +    F +   +  +
Sbjct: 181 RFVSDHRQRIVRETGPALLKKYNIQETEIQMPSAEAYYEKHKNLYMTPGGFVVYHVESAD 240

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL--------LESDLHPQF 246
              + KR K  +       K  +K  +  +K    + G    +            +   F
Sbjct: 241 SAKLAKRFKGKKVDLKGFMKIASKFSE--NKDTKAAKGFVGKVVYGHPLPYGIGFVPNMF 298

Query: 247 QNLLKKSQNNTTNPYVTQKG--VEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
             L        ++   ++               +  E      +         
Sbjct: 299 VALDTLKDGAISSVIKSESTGRYHVFYRESV--VQPEQKPLDRVRKSIERDLA 349


>gi|253580888|ref|ZP_04858150.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847730|gb|EES75698.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 410

 Score = 41.6 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/323 (7%), Positives = 68/323 (21%), Gaps = 28/323 (8%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSS--RIRTTINGEVITDGDISKRIALLKLQKING 70
           +   T    L     V ++S          +   T++G  I  G +S      + Q    
Sbjct: 1   MVKRTAVVTLAGVMSVGMLSGCGSKTLDGTKTVATVDGTDIPLGVVSLYAREQQQQTTTM 60

Query: 71  ELE-----KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
            L           +   +   +   +++  +   +    + ++                 
Sbjct: 61  YLNYMGSADNIWDQTAGDDSDETYGDQAVTSSLESVEKMYILKEKAADYNVELTDDDEAA 120

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK--------MKNITVRE 177
                                V ++          ++                 +   + 
Sbjct: 121 IADAASQFMAANSEETIKELAVTEDQVKTLLELQTIQKKMYDPVVAEGKITVSDDEANQT 180

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP---KDCNKLEKFASKIHDVSIGKA 234
                 + +  D+    +   +K        +++           +        V     
Sbjct: 181 TFTYVSISTSGDDITDEEKKTKKEQAQEILDKMKEDPTADMSEIAKGVDDSYSAVQGNFT 240

Query: 235 QYLLESDL---------HPQFQNLLKKSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIAL 284
               E +              + L         +    T  G   + +    D     + 
Sbjct: 241 TKESEDEDEDSGSEAYPDEVLKVLRGLKDGEVADNIIETDTGYYVVRLDKINDEDATASK 300

Query: 285 KAYLSAQNTPTKIEKHEAEYVKK 307
           +  L      T      A+++ +
Sbjct: 301 RESLQNSKESTYFTDTTAKWLDE 323


>gi|172037269|ref|YP_001803770.1| hypothetical protein cce_2354 [Cyanothece sp. ATCC 51142]
 gi|171698723|gb|ACB51704.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 267

 Score = 41.6 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/255 (7%), Positives = 56/255 (21%), Gaps = 31/255 (12%)

Query: 41  RIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
            I   I  + I+  ++   +A  +L           + +L  E +  Q I     T +  
Sbjct: 12  NIVLKIGDQAISSEELYPLLAQYRL-----------LPQLAKEIIIDQAIADITCTPEET 60

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
            +               +  +                           +    L   +L+
Sbjct: 61  NLAKQQFYQRLQISDETQLKAWLDAHGMT------------------QEQLEKLSVRDLK 102

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
           +E          +       +  L  +  + ++ +     +                   
Sbjct: 103 IEKFKQLTWADKLDPYFVKCKGQLDRVVYSLIRTKDPGVAQELYFRIQEGE-NTLSELAR 161

Query: 221 KFASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
           +++      + G    +  +       Q L        + P         + +       
Sbjct: 162 QYSQGSEAQTGGLLGPVELNTPHPKIAQILAASRPGQLSPPTQIGDWWIILRLEKYMSAQ 221

Query: 280 GEIALKAYLSAQNTP 294
            +   +  L  +   
Sbjct: 222 LDDKTRQRLLNELFQ 236


>gi|307152561|ref|YP_003887945.1| parvulin-like peptidyl-prolyl isomerase-like protein [Cyanothece
           sp. PCC 7822]
 gi|306982789|gb|ADN14670.1| parvulin-like peptidyl-prolyl isomerase-like protein [Cyanothece
           sp. PCC 7822]
          Length = 246

 Score = 41.6 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/256 (8%), Positives = 67/256 (26%), Gaps = 31/256 (12%)

Query: 41  RIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSN 100
            +   I  + IT+ D+   +A  +L      +++I + + I       E  +        
Sbjct: 2   TVVLQIGEQKITESDLYSLLAQYRLL--PQLIKEIIIDQAIAPIECTPEEIQMARN---- 55

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                   + +N   +     ++L +Q +     +             +  +  K     
Sbjct: 56  ------FFYQQNQLTNEAQVQAWLQQQRMTQEQLEHLSVRDLKLEKFKQATWTNKIEPYF 109

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
           ++I     ++    +R              + +                          +
Sbjct: 110 LKIKGKLDRVIYSLIRTKDAGIAQELYFRIQNEE------------------NTFEELAK 151

Query: 221 KFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
           +++      + G    +  +  HP   Q L+         P    + +  + +  +    
Sbjct: 152 QYSQGPEAQTAGLIGPVELNVPHPTIGQILMGSQPGQLWPPTQVGEWIIIVRLEKRISAQ 211

Query: 280 GEIALKAYLSAQNTPT 295
            +   +  +  +    
Sbjct: 212 LDQQTQQRILNELFQE 227


>gi|186685006|ref|YP_001868202.1| hypothetical protein Npun_R4914 [Nostoc punctiforme PCC 73102]
 gi|186467458|gb|ACC83259.1| conserved hypothetical protein [Nostoc punctiforme PCC 73102]
          Length = 256

 Score = 41.6 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/262 (9%), Positives = 65/262 (24%), Gaps = 23/262 (8%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              I    IT  ++   +     Q +     ++ + E I +                   
Sbjct: 4   AIQIGNRTITARELISLLGNY--QMLPQLQRELIIDEAIEQ-------NSRSEKIAIECT 54

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                Q  +   +  +  +    +  +                 +    F       ++E
Sbjct: 55  PEEIAQAKQQFYVEKQLKNEEDIQAWMTHQGLTIEQIEVITTRKLKIEKFKQATWGNKLE 114

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
               + K K   V   L+R                V    +     + +     +   ++
Sbjct: 115 SYFFQSKAKLDKVIYSLLR-------------TQDVGIAQELYFRIQAKENSFADLAREY 161

Query: 223 ASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           +      + G    +  + LHP   Q L          P    +    + +        +
Sbjct: 162 SLGPEAQTGGLVGPIELNALHPIMVQMLSSSQPGQILPPTRIAEWFVILRLEKFIPAQLD 221

Query: 282 IALKAYLSAQNTPTKIEKHEAE 303
             +K  L  +   T +++ + +
Sbjct: 222 EFMKVRLLNELFETWLQEQQKQ 243


>gi|237722124|ref|ZP_04552605.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229448993|gb|EEO54784.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 330

 Score = 41.6 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/198 (10%), Positives = 57/198 (28%), Gaps = 5/198 (2%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIAL--LKLQKINGELEKIAVQELIVETLKK 87
           I         + +   +NGE I   +++ +       +     E++   +  LI + L +
Sbjct: 14  IACNTPVINKNDVVAEVNGEQILLSELASQSKQEIFDILNTAYEIKSRVLAGLIKQKLLE 73

Query: 88  QEIEKSGITFD---SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
              +K  ++ +      V         +        +     +G      K  L  +  +
Sbjct: 74  DAAKKENMSLEEFIDWFVQQKICVGQDSLKKRYGFNTQSFYVKGELIPLVKGSLEEKLSY 133

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
              +++  +    +   +    K+ +      E ++R +      N      F+     +
Sbjct: 134 QQKLRSRIVQALVDSLYQKADIKRFVYPPKQPECVVRDLCVYYRGNLDSPVSFIVASDYN 193

Query: 205 AEESRLRLPKDCNKLEKF 222
            E             + +
Sbjct: 194 CERCVQFEKTLSKLYDNY 211


>gi|283953940|ref|ZP_06371469.1| peptidyl-prolyl cis-trans isomerase D [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794545|gb|EFC33285.1| peptidyl-prolyl cis-trans isomerase D [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 496

 Score = 41.6 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 37/374 (9%), Positives = 96/374 (25%), Gaps = 77/374 (20%)

Query: 3   SKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIAL 62
            K +  ++ ++  +   FV   F       +     SS    T+  E I+  +   R   
Sbjct: 8   HKKYLVVTIWVSTI--AFVGAGFLGWGAYDFNLNRSSS--VATVGNEKISFSEFDTRYRQ 63

Query: 63  L-------------KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
           +                     +E IA+  L+ + L     +  G+  + N +       
Sbjct: 64  ILSYYNQISNGALTPENAEQLGIENIALSSLVEDKLLLNFAKDLGVDANENEILQKLANT 123

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM---------------- 153
                 + +   +   +    +N   +    Q     +V                     
Sbjct: 124 REFQDPTGDFNKTIYYELLNVNNLTPKDYETQLANEVIVGKLDHIFNIPNKDEELKMLAS 183

Query: 154 -----------------LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
                                  E ++     + K     + +     + +P +  +   
Sbjct: 184 SYFMRDALSIAKIDYDKKNIKINEEDLKKLWSEHKEDYKTKKMYEISTYFLPSSNEKIDD 243

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHD---------------------VSIGKAQ 235
              ++  + +E++L+      K+  F S  ++                      +   + 
Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKSVANAKFLDLKNGKDSF 303

Query: 236 ----YLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLS 289
                + ESD++     L K    +   P +   G   + +     +        +  + 
Sbjct: 304 QKDHNISESDVYYPIDLLNKAKNGDVLRPVLYNNGYIIVKLNKVDPIRNKTFEEARDEVL 363

Query: 290 AQNTPTKIEKHEAE 303
                 +  K+  E
Sbjct: 364 PIYLSEQARKNLEE 377


>gi|115443012|ref|XP_001218313.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Aspergillus terreus
           NIH2624]
 gi|114188182|gb|EAU29882.1| peptidyl-prolyl cis-trans isomerase ssp-1 [Aspergillus terreus
           NIH2624]
          Length = 212

 Score = 41.6 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 9/196 (4%), Positives = 30/196 (15%), Gaps = 20/196 (10%)

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
                               S      F                 + +   +        
Sbjct: 7   PVSIQVETGLPAGWEVRHSNSKNLPYYFCPATKESRWEPPADTDTEKLKVYMANYHSAPA 66

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
                 +     +    +       R   +   +     +  ++         +      
Sbjct: 67  GRPEFGQGEGKIRCSHLLVKHRESRRPSSWREAEITRSKEEAIEILRGHERRIQSGEATL 126

Query: 216 CNKLEKFASKIHDVSIGKA-------------------QYLLESDLHPQFQNLLKK-SQN 255
               +  +        G                      +    ++  +F++        
Sbjct: 127 GEIAKSESDCSSARKNGDLYVFAGVPQSSTWMRLTHSSGFFGRGEMQKEFEDAAFALQPG 186

Query: 256 NTTNPYVTQKGVEYIA 271
             +    T  GV  I 
Sbjct: 187 EVSGIVDTASGVHLIE 202


>gi|238923933|ref|YP_002937449.1| hypothetical protein EUBREC_1571 [Eubacterium rectale ATCC 33656]
 gi|238875608|gb|ACR75315.1| Hypothetical protein EUBREC_1571 [Eubacterium rectale ATCC 33656]
          Length = 329

 Score = 41.6 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/164 (12%), Positives = 48/164 (29%), Gaps = 5/164 (3%)

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           +             +I +  +           +   + +   ++      +QK    ++E
Sbjct: 129 LNEAEKKFTKADLSDIESAYEHYAIAQKLYNSLSKGVDTEVSDEDARVIHIQKIFVKSKE 188

Query: 208 SRLRLPKD---CNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS-QNNTTNPYVT 263
           S   + +           AS   + S  +  Y  +  L  + + +  +     T++   T
Sbjct: 189 SADAVSQKLLSKEDFAAVASGSSEDSQTEL-YAAKGTLPQEVEAVAFELGDGETSDMIST 247

Query: 264 QKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
             G  +I    K D       K  +  +    +       +VKK
Sbjct: 248 DDGYYFIKCISKLDREKTEQNKVTILQKRQQEQFNDDYEHFVKK 291


>gi|95928628|ref|ZP_01311375.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135418|gb|EAT17070.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 1012

 Score = 41.6 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 30/248 (12%), Positives = 69/248 (27%), Gaps = 17/248 (6%)

Query: 3   SKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRT------TI--NGEVITDG 54
             + TSL   I     + V++ F +  +    S ++   +        T+  +G  +   
Sbjct: 360 QALMTSLRSQIAQGALFIVVLGFILWAVGQRLSRSIKDNVTVLNRALETVAGDGREVELD 419

Query: 55  DI--SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
           D+   + IA+ +      E  +IA  EL  +T  +              V+        N
Sbjct: 420 DVKFDEFIAIGQAANRMLEQRRIAEDEL-NDTRLRFRTALERAPLMVALVDPQRYILFSN 478

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYL------AIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
           +  +                  +           Q +   + +  F +   N++ E    
Sbjct: 479 SMWNDAVPMDVCAAHLEAHWFSEASWVKFDTAFDQMVKGRLQQERFDICLKNVQGEKRYY 538

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
              +  I   +    ++L    D   + Q   +       ++   L       E+    +
Sbjct: 539 DMALATIQNADGENSSILVMARDITERRQAEERLTWLAHYDALTGLAHRNYAKEQLEQML 598

Query: 227 HDVSIGKA 234
                   
Sbjct: 599 TGEVADDL 606


>gi|187931475|ref|YP_001891459.1| hypothetical protein FTM_0703 [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712384|gb|ACD30681.1| conserved hypothetical protein [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 477

 Score = 41.6 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/166 (9%), Positives = 43/166 (25%), Gaps = 7/166 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRI-RTTINGEVITDGDISKR 59
           M       L      +    +  IF I  +  + +   SSR     +    I+     + 
Sbjct: 1   MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60

Query: 60  IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                      E ++  + ++I + L   + ++  I      +      +        + 
Sbjct: 61  AQ----SATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAIFTNPMFF--DKDG 114

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
             S    + +           Q +  ++          +  + I  
Sbjct: 115 KFSAEKLKQVVAYLGGMDKLEQILAQNIQATIIPKTIVDTSIVIDY 160


>gi|222824176|ref|YP_002575750.1| peptidyl-prolyl cis-trans isomerase D [Campylobacter lari RM2100]
 gi|222539398|gb|ACM64499.1| conserved hypothetical protein, putative peptidyl-prolyl cis-trans
           isomerase D [Campylobacter lari RM2100]
          Length = 492

 Score = 41.6 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 37/362 (10%), Positives = 93/362 (25%), Gaps = 71/362 (19%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI------------ 60
           + +  +    +    V   SY      S     +  E I+  + + +             
Sbjct: 14  VTIWISVIAFVGAGFVGWGSYDFNTDRSNSVAKVGDEKISYDEFNLKYSQLFGYYSQLNN 73

Query: 61  -ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG----L 115
               + Q     L+  A+ ELI E L     +  G+      + Y               
Sbjct: 74  GNYTQEQAQKDGLDTQAINELIQEKLLLSYAKTLGLNVSEEEIAYDLAHQKIFHNASGVF 133

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV---------------------------V 148
               + + L +       +++ +  + +   +                           V
Sbjct: 134 DKNLYYNLLARNNYTPKTYEKIIHDELLLKKINAILNLQIKPNELDMFGASFLMQDSLKV 193

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
           +   +        E    +   KN  + +      L +   N    +   ++     EE+
Sbjct: 194 QAIKLDNKNITMDEKELKQTWEKNKELYKTQRSYELATYFLNPDIIKIDDKEIQAYYEEN 253

Query: 209 RLRLPKDCNKLEKFASKI-------------------------HDVSIGKAQYLLESDLH 243
           +        K+                                ++++  K   + ++D++
Sbjct: 254 KNDYKDFAGKILSLEQSKDKVIKDLKLSKLKLKANESYVALRKNELNFDKNITISDADVY 313

Query: 244 PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHE 301
              +N+ K  +N+   P+  + G     +     +        K  +S      K +   
Sbjct: 314 YPLENIQKAKENDFIKPFKFENGYMIAKVIKINPIQTMTFEQAKNEVSKLYIKEKTKALL 373

Query: 302 AE 303
            E
Sbjct: 374 EE 375


>gi|113477056|ref|YP_723117.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Trichodesmium
           erythraeum IMS101]
 gi|110168104|gb|ABG52644.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Trichodesmium
           erythraeum IMS101]
          Length = 254

 Score = 41.6 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/271 (7%), Positives = 76/271 (28%), Gaps = 27/271 (9%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
           M S+   T+  E ++ G   + +  L+            V + ++E   +    +  I  
Sbjct: 1   MESQALLTVGEEEVSWG---QSLKYLQASGKLQSFVTEIVAQYVIEKELQ---SRKDIDV 54

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
           D   +    +       L  ++           +   +  +   ++   +V +  + +  
Sbjct: 55  DQAIIQQAIIDFRLQRKLEDQEK--------FQEWLKQNGINYNALESQIVNSFRLKQLK 106

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
           +        +   +     + +I + +              +       +      K  +
Sbjct: 107 DSITSERIEEYFNQRKAGLDSVILSRIVV---------QDKELVDALYRKIVEDGAKFED 157

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIAICDKR 276
             ++++        G    +  + L    ++ +   +  +   P+ T +      +   +
Sbjct: 158 LAKEYSVTNDKNFNGIMGVVSLASLPEDLRDTINSANSGDILGPFKTNQFWSIFRLEQLQ 217

Query: 277 DLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
               +      +  +      E+   E ++ 
Sbjct: 218 GASLDNP---EIKKKLNSELFERWITEQLQN 245


>gi|212696154|ref|ZP_03304282.1| hypothetical protein ANHYDRO_00690 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676783|gb|EEB36390.1| hypothetical protein ANHYDRO_00690 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 306

 Score = 41.6 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 33/326 (10%), Positives = 87/326 (26%), Gaps = 44/326 (13%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL---- 65
              I+  T   ++ +FC++ +         +     ++G+ I+     K ++  +     
Sbjct: 6   KVLIQKKTIIAIISLFCLILVSCSSKIDKKNN-VAYVDGQAISKNLYEKELSYYQKFYLK 64

Query: 66  --------------QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
                               LE   +  LI + +   ++ K+ +    N         ++
Sbjct: 65  KYGNDYLDKKTKNGLTNYERLESELLDSLIQDQIMINDLRKNKVKITKNDSLEVIEDLSK 124

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
              +S +     +   G  ++ F +   + SI    +   F          +   K+   
Sbjct: 125 K-SMSKDSLIENVKSFGADEDEFDEISYMDSIRKKHMDYYFSNDDTKDSEIVDYFKENKF 183

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
                +Y            K++      +  K    S++R          +         
Sbjct: 184 LQKKYKYDCLIFDNESEAIKIRANIKNSQDFKKYLNSKVRNYDIYRSDFVYNDDF----- 238

Query: 232 GKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ 291
                          +    K  +  +  +  +     + I            +  L   
Sbjct: 239 -------------LLKESSLKKADQISKIFKYKDSYIILMINSV------NQNENDLLID 279

Query: 292 NTPTKIEKHEAEYVKKLRSNAIIHYY 317
                ++    +Y+K L  N+ I  +
Sbjct: 280 AKKIYLKNEYDKYLKNLIKNSNIKLF 305


>gi|328676007|gb|AEB28682.1| Peptidyl-prolyl cis-trans isomerase ppiD [Francisella cf. novicida
           3523]
          Length = 477

 Score = 41.6 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/161 (8%), Positives = 40/161 (24%), Gaps = 7/161 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRI-RTTINGEVITDGDISKR 59
           M       L      +    +  IF I  +  + +   SSR     +    I+     + 
Sbjct: 1   MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60

Query: 60  IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                        ++  + ++I + L   + ++  I      +      +        + 
Sbjct: 61  AQ----SATTDIQKRAILSQMIDQYLILADAQRHNIVVSKLALQSAIFTNPMFF--DKDG 114

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
             S    + +           Q +  ++          +  
Sbjct: 115 KFSADKLKQVVAYLGGMDRLEQMLTQNIQATIIPKTIVDTS 155


>gi|90423968|ref|YP_532338.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB18]
 gi|90105982|gb|ABD88019.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisB18]
          Length = 662

 Score = 41.6 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/167 (9%), Positives = 49/167 (29%), Gaps = 18/167 (10%)

Query: 1   MTSKVFTSLSDF----IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI 56
           M   +  + S++    I ++    +++ F +  I         S     I    I+    
Sbjct: 30  MLRGIRKASSNWVGKTIMIIVMSVLILSFAVWGIADIFKGFGQST-LAKIGSTEISTEQF 88

Query: 57  SK----RIALL---------KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            +    R+  +         + Q     +++  +Q+ + E    ++  + G+        
Sbjct: 89  RQLYTERLQQIGRQFGRPLTQDQARAFGIDRQVLQQAVAEAALDEDARRIGLGQSDAETM 148

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
              V      G +     +   +      + +Q    +     + + 
Sbjct: 149 RTIVSDPNFRGTNGGFDRARFAQAIRQFGYTEQRYIAEQRKVSLRRQ 195



 Score = 38.1 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/256 (9%), Positives = 61/256 (23%), Gaps = 15/256 (5%)

Query: 59  RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
               +  Q+      +IA          K  ++      +      +    A + G  A 
Sbjct: 180 EQRYIAEQRKVSLRRQIAGTLTAELEPPKTLLDALTRFQNEQRSIDYVKLDANHAGTIAP 239

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
                L           +    + I    +  + + K+  +  E      + +       
Sbjct: 240 PSPEVLAAYYADHKTQFRAPEYRKISFVALTPEAVAKWTTVSDEDAKKVYEARRDKFSTP 299

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
             R +   +  N  + Q    K                +  ++      D        + 
Sbjct: 300 ERRQITQIVFPNAEEAQAARAKI--------TGGLSFDDLAKERGLSPADA---DLGLVS 348

Query: 239 ESDL--HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTP 294
           ++++              N+ + P   + GV  + +            ++   L      
Sbjct: 349 KAEILDPAVADAAFALPANDVSQPIPGRFGVTLLKVGKIEPGSQQSFESVAPALKRDIAI 408

Query: 295 TKIEKHEAEYVKKLRS 310
            K     A+   K+  
Sbjct: 409 DKARASIADLHNKMED 424


>gi|159901476|ref|YP_001547723.1| hypothetical protein Haur_4965 [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159894515|gb|ABX07595.1| hypothetical protein Haur_4965 [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 463

 Score = 41.6 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/222 (9%), Positives = 60/222 (27%), Gaps = 20/222 (9%)

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
           N V+     +        E+ S++       D    +   +      +++     K    
Sbjct: 205 NRVDSAVTTYFGTLREFIEETSTYGLATLPFDREAFKAFVLHQERLQLMRQKLGEKLVTE 264

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
           +  I       + I V        +    D     +    K   D   ++L        +
Sbjct: 265 DQAIKEVYADAQQIFVT-----ANITDPADPMTVTKWLQAKTKIDDIAAQLTDTASFTDV 319

Query: 220 EKFASKIHDVSIGKAQYLLESDLHPQ--FQNLLKKSQNNTTNPYVTQKGVEYIAICDK-- 275
           +   +  +            S        + +  +       PY + +G   I +  +  
Sbjct: 320 QILNTNDNATDNPTTGMQPLSQYAAFGITEPISTQEVGVIGKPYQSTQGWHIILVNQREW 379

Query: 276 RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           R    ++  K            ++   ++++  R+ + +  +
Sbjct: 380 RPSQSDLTTKR-----------DEAVNKWIEDKRAVSNVQRF 410


>gi|115524599|ref|YP_781510.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisA53]
 gi|115518546|gb|ABJ06530.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
           palustris BisA53]
          Length = 633

 Score = 41.6 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 28/397 (7%), Positives = 88/397 (22%), Gaps = 87/397 (21%)

Query: 1   MTSKVFTSLSDFIKLLTT----YFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI 56
           M   +  + S++I  +        +++ F +  I         S    TI    I+    
Sbjct: 1   MLRGIRKASSNWIGKIILSTVMGVLILSFAVWGIGDIFKGFGRST-AATIGSTEISTEQF 59

Query: 57  SK----RIALLKLQKING---------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            +    R+  +  Q              +++  +Q+ + E    ++  + G+        
Sbjct: 60  RQLYTERLQQIGRQFGKPLTPDQARAFGIDRQVLQQAVAEAALDEDARRKGLGQSDAETM 119

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF----------- 152
              +      G + +   +   +      + +Q    +     + +              
Sbjct: 120 RTILSDPNFKGTAGKFDPARFGQVLRQFGYTEQRYIAEQRRVSLRRQIAGTLTAGLIPPK 179

Query: 153 ------------MLKYGNLEMEIPA--------------NKQKMKNITVREYLIRTVLFS 186
                             ++++                      KN        +    +
Sbjct: 180 TLIDALGRYQNEQRTIDYVKLDAAHAGPIEPPSPEALAAYFADHKNQFRAPEYRKASFVA 239

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS-----------KIHDVSIG--- 232
           +  + +     V            R      +  + +                +  G   
Sbjct: 240 LTPDAVAKWTTVSDEDAKKAYEDRREKFATPERRQVSQIVFPTSADAQAARSKIDGGASF 299

Query: 233 --------------KAQYLLESDL--HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR 276
                             + ++ +              N  + P   + GV    +    
Sbjct: 300 EDIAKERGLSATDIDLGLVAKAGILDPAVAAAAFALPANQVSQPVNGRFGVALAKVGAIE 359

Query: 277 D--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
                   ++ A L       +     ++   K+  +
Sbjct: 360 PGSQQSFESVAADLKRDIAIERARASISDLHNKMEDD 396


>gi|257880272|ref|ZP_05659925.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,230,933]
 gi|257882126|ref|ZP_05661779.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,502]
 gi|257885317|ref|ZP_05664970.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,501]
 gi|257890929|ref|ZP_05670582.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,410]
 gi|260562427|ref|ZP_05832941.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           C68]
 gi|257814500|gb|EEV43258.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,230,933]
 gi|257817784|gb|EEV45112.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,502]
 gi|257821173|gb|EEV48303.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,501]
 gi|257827289|gb|EEV53915.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,410]
 gi|260073351|gb|EEW61692.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           C68]
          Length = 340

 Score = 41.2 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/320 (10%), Positives = 86/320 (26%), Gaps = 45/320 (14%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +   +K  +          V  ++  S   +++   T+ G  IT  D      L      
Sbjct: 1   MQILMKKKSIILAATSALAVLTLAACS-GDTNKDIATMKGGTITVSDFYDEAKL------ 53

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
                +  VQ +I+  +      K G       V+  + + A++ G + E        Q 
Sbjct: 54  -ESSNQSLVQRMIIYKV---FNNKYGDKVTDKQVDAEYDKQAKSLGDTFES-------QL 102

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
               + K             +          + ++          +    +   ++    
Sbjct: 103 EAAGYTKDTYKEYIRNNLAFEAGLKAHVDITDDDLKTAW-----KSFHPEVEAQIIKLSS 157

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF- 246
           +++ ++                         +  ++        GK ++   +   P   
Sbjct: 158 EDEAKDVKKSA----------DDGDDFSKLAKDKSTDTETKEDGGKVKFDSTTTTIPAEV 207

Query: 247 -QNLLKKSQNNTTNPYVTQK------GVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKI- 297
            +   K      ++   T            + +   ++ G ++   K  L    T TK+ 
Sbjct: 208 KEAAFKLKDGEISDVITTTNPTSYATEYYVVKMVKNQNKGNDMDKYKDQLKDIATETKLS 267

Query: 298 -EKHEAEYVKKLRSNAIIHY 316
                 + + +   +A +  
Sbjct: 268 DNAFTTKVIGEELKDANVKI 287


>gi|306829356|ref|ZP_07462546.1| peptidyl-prolyl cis-trans isomerase [Streptococcus mitis ATCC 6249]
 gi|304428442|gb|EFM31532.1| peptidyl-prolyl cis-trans isomerase [Streptococcus mitis ATCC 6249]
          Length = 313

 Score = 41.2 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/290 (9%), Positives = 74/290 (25%), Gaps = 39/290 (13%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELI 81
            I    V  ++  S +   +   ++ G+VIT+      +        N   +++ +   I
Sbjct: 9   AITLLSVATLAACSNSSEGKDLISMKGDVITEHQFFDEVK------NNPTAQQVLLNMTI 62

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
            +  ++Q   +       + V     ++  +     +      +               Q
Sbjct: 63  QKVFEQQYGSEVTDKDVDDAVAEEQKKYGDSYNSVLQRAGMTPET-----------RKAQ 111

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
                +V+          E E+     +    +    +   ++    ++K +      K 
Sbjct: 112 IRTSKLVELAVK---KAAESELTDEAYQKAFESYTPDVTAQIIRLDNEDKAKEVLEKAKA 168

Query: 202 IKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLES-DLHPQFQNLLKK-SQNNTT 258
                             ++++       + G+  +   S +L  Q +        N  +
Sbjct: 169 ---------EGADFAQLAKEYSNDDKTKENGGEITFDSASTELPEQVKKAAFALDVNGIS 219

Query: 259 NPYVT------QKGVEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEKHE 301
           +                I +  K +        K  L       K     
Sbjct: 220 DVITATGTQAYSNQFYIIKVTKKTEKSSNIEDYKEKLKTIILTQKQNDSA 269


>gi|199599019|ref|ZP_03212426.1| peptidylprolyl isomerase [Lactobacillus rhamnosus HN001]
 gi|199590055|gb|EDY98154.1| peptidylprolyl isomerase [Lactobacillus rhamnosus HN001]
          Length = 300

 Score = 41.2 bits (94), Expect = 0.18,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 82/288 (28%), Gaps = 38/288 (13%)

Query: 14  KLLTTYFVLIIFC--IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
           K L   F+  +    I+ +   +S    S    T +G  +T     K +           
Sbjct: 3   KKLRVPFLAAMMASSIMLLSGCQSKQADSTTVATYSGGQVTQASFYKELK-------QSP 55

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
             K  +  L++     +   KS  T   +                 E+F+SFL + G   
Sbjct: 56  TTKTVLANLLIYRALNKAYGKSVSTKSVDNTYN------SYKNEYGENFTSFLSQNGFSK 109

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
           + F+Q +    +    +K     K  N +++              +  ++ +L S     
Sbjct: 110 SSFRQSIRTNLLSEVALKKL--KKVTNSQLKTAWKTY------QPKVTVQHILTSDESTA 161

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYLLES-DLHPQFQNL 249
            Q    +                     + ++         GK  +   S  L   F++ 
Sbjct: 162 KQIISDLAA-----------GKDFTTLAKTYSIDTSTKDKGGKVSFESSSKSLDSTFKDA 210

Query: 250 LKK-SQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT 295
             K      T  P     G E I + +    G     K  L+A     
Sbjct: 211 AYKLKNGEYTQSPVKVTNGYEVIKMIEHPAKGTFSDSKKALTASVYSK 258


>gi|291544303|emb|CBL17412.1| PPIC-type PPIASE domain [Ruminococcus sp. 18P13]
          Length = 489

 Score = 41.2 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/119 (10%), Positives = 37/119 (31%), Gaps = 6/119 (5%)

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN- 248
           +        +  +++ +             +++++     S G  + +   ++  +F   
Sbjct: 357 SAEAALERAKAVLEEWKNGAANEASFAELAKQYSADGSASSGGLYEMVYPGEMVEEFDQW 416

Query: 249 -LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
              +  ++  T+   TQ G   +              +A +S +      +    E VK
Sbjct: 417 CFDESRKDGDTDIVETQYGAHVMYFVK----HSLPKWEADISGKLDNEGYKAAYDELVK 471


>gi|298291797|ref|YP_003693736.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Starkeya novella DSM
           506]
 gi|296928308|gb|ADH89117.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Starkeya novella DSM
           506]
          Length = 629

 Score = 41.2 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/162 (12%), Positives = 43/162 (26%), Gaps = 8/162 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +  S S  +  +    +++ F I  I        S     TI    IT  +  +  
Sbjct: 1   MLETLRKSASGIVAKILMGLLIVSFGIWGIADVFRGFGSQT-LATIGDTEITVPEFRQLY 59

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
                Q        I  ++        +                     A++ GL+  D 
Sbjct: 60  QQRLQQVSQQLKRGITPEQ-------ARAFGIPDQLLQEQLAEAALNDQAKSLGLALSDA 112

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                 Q              + +  +++++   +   +E E
Sbjct: 113 EIARRVQSNPSFFGPGGSFDPNYFNQLLRSNGFTEARFVEAE 154


>gi|146341037|ref|YP_001206085.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. ORS278]
 gi|146193843|emb|CAL77860.1| Putative Peptidylprolyl isomerase [Bradyrhizobium sp. ORS278]
          Length = 636

 Score = 41.2 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/216 (8%), Positives = 43/216 (19%), Gaps = 14/216 (6%)

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
           +      +    A   G         L           +    + I   +V  + + K+ 
Sbjct: 190 NEQRSIDYVKLDAAQAGTIETPAPEVLATYFDEHKAQFKAPEYRKISFVLVTPEEIGKWT 249

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
            +  E        +   +     R V         + Q    +             +   
Sbjct: 250 TVSDEDARKVFDQRKALMGTPEKRQVQQMTFPTMEEAQAARARIASGEVTFDELAKERNL 309

Query: 218 KLEKFASKIHDVSIGKAQYLLESDL--HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK 275
                              + +S +                 + P      V  + +   
Sbjct: 310 NPADL----------DLGLVTKSAILDPAVADTAFSLPTGEVSQPVKGAFNVALVKVSAI 359

Query: 276 RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           +   G+      ++A        +     V  LR  
Sbjct: 360 QP--GQEPAYESVAADIKKEIAAERAKSEVATLRDK 393


>gi|294500655|ref|YP_003564355.1| lipoprotein [Bacillus megaterium QM B1551]
 gi|294350592|gb|ADE70921.1| lipoprotein, putative [Bacillus megaterium QM B1551]
          Length = 300

 Score = 41.2 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 34/308 (11%), Positives = 85/308 (27%), Gaps = 43/308 (13%)

Query: 18  TYFVLIIFCIVPIVSYKSWAMSS--------------RIRTTINGEVITDGDISKRIALL 63
              +L +   +  ++      S+              +      G  +T  + ++ +A+ 
Sbjct: 6   LKLLLAVLTALGFLTGCEGKHSNTMFPSVEISQLSSTKELAAYEGGKVTGAEFNRFLAVE 65

Query: 64  KLQKINGEL-----EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
                +  L      K  +++L+++ +          +           +  + +     
Sbjct: 66  GFLNPDAPLNDTSYRKELLRQLVMQKILI---SHLKTSDKVQKQVEDMWKQIKRSYDEDT 122

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
               +              +  Q      ++  F  +  + E+                Y
Sbjct: 123 RKQGYEVLNIRSS-----DVTNQLTNQFKLEEYFRKQITSDEL--------------TAY 163

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
             R        +  Q           A     +     +  +K+A       I  A  L 
Sbjct: 164 YKRIENDLTRVSFTQLAFSTLHDAAAAAAELQKGTSLQDVQKKYADVQTVSKIENADNLK 223

Query: 239 ESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
            S L P F ++LKK     ++ P    K    + I  ++D   E  +K  +  +     I
Sbjct: 224 LSSLSPSFIDVLKKQHIGESSEPIKMGKVYYIL-ILKQKDKKTESEVKEEMMKELVLNHI 282

Query: 298 EKHEAEYV 305
            ++  + +
Sbjct: 283 NRYIQDQL 290


>gi|254374458|ref|ZP_04989940.1| conserved hypothetical protein [Francisella novicida GA99-3548]
 gi|151572178|gb|EDN37832.1| conserved hypothetical protein [Francisella novicida GA99-3548]
          Length = 477

 Score = 41.2 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 30/302 (9%), Positives = 76/302 (25%), Gaps = 13/302 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRI-RTTINGEVITDGDISKR 59
           M       L      +    +  IF I  +  + +   SSR     +    I+     + 
Sbjct: 1   MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60

Query: 60  IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                      E ++  + ++I + L   + ++  I      +      +        + 
Sbjct: 61  AQ----SATTEEQKRAILSQMIDQYLILVDAQRHDIVVSKLALQSAIFTNPMFF--DKDG 114

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
             S    + +           Q +  ++          +  +    + + + +I      
Sbjct: 115 KFSAEKLKQVVAYLGGMDKLEQILAQNIQATIIPKTIVDTSIVTDYDTKLLNSIYSVNKY 174

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
           I  +  S  D K Q +   Q      +  +        K   +     D       ++ +
Sbjct: 175 IDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITKDN------FVPK 228

Query: 240 SDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
           + +         ++       +          I   R    +             TK+EK
Sbjct: 229 NKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQNRHALEQFNEYTQNIDSIKYTKLEK 288

Query: 300 HE 301
             
Sbjct: 289 QF 290


>gi|89256253|ref|YP_513615.1| hypothetical protein FTL_0896 [Francisella tularensis subsp.
           holarctica LVS]
 gi|254367592|ref|ZP_04983613.1| hypothetical protein FTHG_00855 [Francisella tularensis subsp.
           holarctica 257]
 gi|89144084|emb|CAJ79335.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|134253403|gb|EBA52497.1| hypothetical protein FTHG_00855 [Francisella tularensis subsp.
           holarctica 257]
          Length = 476

 Score = 41.2 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/162 (9%), Positives = 43/162 (26%), Gaps = 7/162 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRI-RTTINGEVITDGDISKR 59
           M       L      +    +  IF I  +  + +   SSR     +    I+     + 
Sbjct: 1   MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60

Query: 60  IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
           +          E ++  + ++I + L   + ++  I      +      +        + 
Sbjct: 61  VQ----SATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAIFTNPMFF--DKDG 114

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
             S    + +           Q +  ++          +  +
Sbjct: 115 KFSAEKLKQVVAYLGGMDKLEQILAQNIQATIIPKTIVDTSI 156


>gi|302325773|gb|ADL24974.1| PPIC-type PPIASE domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 671

 Score = 41.2 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 10/229 (4%), Positives = 38/229 (16%), Gaps = 9/229 (3%)

Query: 52  TDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
           +  D+ +R             +    +      ++     +                 AR
Sbjct: 167 SQEDLIQRSQAYLASLPKFLTDTTFNKADYDAWIETPAAYRWSAMLSLEDEMKNNSIPAR 226

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
                          +       +       +         +       + +        
Sbjct: 227 QLQTLVGASVHPTSLEAKWSVERRMTDYELQVAVAPSSAFVVDSNSVDSVMVAGYFNAHI 286

Query: 172 NIT-----VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
           +         ++   ++          +       +              +     +   
Sbjct: 287 DSFFVQKDAAQFQYVSIPVEATAGDDASIREYAMTLYYQLTDSSSTTTFEDMARVSSEDP 346

Query: 227 -HDVSIGKA--QYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                 G     ++        F+           + P  +Q G   I 
Sbjct: 347 GSAEKGGILSEDFVGRGSYVKPFEEAAFALDSGKISEPVRSQFGYHIIK 395



 Score = 40.4 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/183 (10%), Positives = 52/183 (28%), Gaps = 11/183 (6%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           + T +++  K +   F   I   +  +        S     +N   I+  D   R+ ++ 
Sbjct: 29  MLTWINEKAKWVIVIFAAGIAIGLLAMDRVPDQGRSYPIGIVNDTKISYTDFDSRVKMIV 88

Query: 65  LQK---------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH--ARNT 113
             +            +L        + + L  ++ EK+ ++     +   F ++  A   
Sbjct: 89  QNQYQNQHLDDEQYSQLRAQVFSSFVRQALFAEQYEKAELSASVAELKNEFKRNSDAVRA 148

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
            L  E  +     Q    +        Q+    + K      +   + +           
Sbjct: 149 RLVQEAQARLYAIQQQATSQEDLIQRSQAYLASLPKFLTDTTFNKADYDAWIETPAAYRW 208

Query: 174 TVR 176
           +  
Sbjct: 209 SAM 211


>gi|291525353|emb|CBK90940.1| PPIC-type PPIASE domain [Eubacterium rectale DSM 17629]
 gi|291527060|emb|CBK92646.1| PPIC-type PPIASE domain [Eubacterium rectale M104/1]
          Length = 329

 Score = 41.2 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 64/249 (25%), Gaps = 12/249 (4%)

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
             ++    + LI     K             T +   V+         E    +      
Sbjct: 44  DNMKCDKTEALIYLANYKNLYGTMYDVNLLETDDASNVEKYIRDVTVDELTRIYCMVSIA 103

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                      +S      K  +       +    A+   M++      + + +  S+  
Sbjct: 104 KQKKITLTDKEKSSVSKAAKEYYDSLNEAEKKFTKADLSDMESAYEHYAIAQKLYNSLSK 163

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNK----------LEKFASKIHDVSIGKAQYLLE 239
                      R+   ++  ++  +  +               AS   + S  +  Y  +
Sbjct: 164 GVDTEVSDEDARVIHIQKIFVKSKESADSVSQKLLSKEDFAAVASGSSEDSQTEL-YAAK 222

Query: 240 SDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE 298
             L  + + +  +     T++   T  G  +I    K D       K  +  +    +  
Sbjct: 223 GTLPQEVEAVAFELGDGETSDMISTDDGYYFIKCISKLDREKTEQNKVTILQKRQQEQFN 282

Query: 299 KHEAEYVKK 307
                +VKK
Sbjct: 283 DDYEHFVKK 291


>gi|261417144|ref|YP_003250827.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261373600|gb|ACX76345.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 643

 Score = 41.2 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 10/229 (4%), Positives = 38/229 (16%), Gaps = 9/229 (3%)

Query: 52  TDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
           +  D+ +R             +    +      ++     +                 AR
Sbjct: 139 SQEDLIQRSQAYLASLPKFLTDTTFNKADYDAWIETPAAYRWSAMLSLEDEMKNNSIPAR 198

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
                          +       +       +         +       + +        
Sbjct: 199 QLQTLVGASVHPTSLEAKWSVERRMTDYELQVAVAPSSAFVVDSNSVDSVMVAGYFNAHI 258

Query: 172 NIT-----VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
           +         ++   ++          +       +              +     +   
Sbjct: 259 DSFFVQKDAAQFQYVSIPVEATAGDDASIREYAMTLYYQLTDSSSTTTFEDMARVSSEDP 318

Query: 227 -HDVSIGKA--QYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVEYIA 271
                 G     ++        F+           + P  +Q G   I 
Sbjct: 319 GSAEKGGILSEDFVGRGSYVKPFEEAAFALDSGKISEPVRSQFGYHIIK 367



 Score = 40.4 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 20/183 (10%), Positives = 52/183 (28%), Gaps = 11/183 (6%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           + T +++  K +   F   I   +  +        S     +N   I+  D   R+ ++ 
Sbjct: 1   MLTWINEKAKWVIVIFAAGIAIGLLAMDRVPDQGRSYPIGIVNDTKISYTDFDSRVKMIV 60

Query: 65  LQK---------INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH--ARNT 113
             +            +L        + + L  ++ EK+ ++     +   F ++  A   
Sbjct: 61  QNQYQNQHLDDEQYSQLRAQVFSSFVRQALFAEQYEKAELSASVAELKNEFKRNSDAVRA 120

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
            L  E  +     Q    +        Q+    + K      +   + +           
Sbjct: 121 RLVQEAQARLYAIQQQATSQEDLIQRSQAYLASLPKFLTDTTFNKADYDAWIETPAAYRW 180

Query: 174 TVR 176
           +  
Sbjct: 181 SAM 183


>gi|108762060|ref|YP_631492.1| hypothetical protein MXAN_3293 [Myxococcus xanthus DK 1622]
 gi|108465940|gb|ABF91125.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
          Length = 236

 Score = 41.2 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/165 (10%), Positives = 54/165 (32%), Gaps = 9/165 (5%)

Query: 23  IIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI---------NGELE 73
            +       +     ++ ++   I G+V+T  ++     +  LQ+          + +  
Sbjct: 27  AVGAAATPPATVEGRVADQVVAIIEGQVLTLSELRFEARVALLQRGGVQALELPLDEDTL 86

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           + A++ +I + ++    ++              V   +           FL +  +    
Sbjct: 87  RGALELIINQRVQVLNADRLQAFPAEPAEVQARVDAFQAVLGGEAALKRFLSRHDVDVQG 146

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
            ++ LA       ++ +   L+    E E+  + ++  +     Y
Sbjct: 147 LERVLARGLRAERILDSRIRLRAQVGETEVRRHFEQNADEYPEGY 191


>gi|332678352|gb|AEE87481.1| Peptidyl-prolyl cis-trans isomerase ppiD [Francisella cf. novicida
           Fx1]
          Length = 477

 Score = 41.2 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 30/302 (9%), Positives = 76/302 (25%), Gaps = 13/302 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRI-RTTINGEVITDGDISKR 59
           M       L      +    +  IF I  +  + +   SSR     +    I+     + 
Sbjct: 1   MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60

Query: 60  IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                      E ++  + ++I + L   + ++  I      +      +        + 
Sbjct: 61  AQ----SATTEEQKRAILSQMIDQYLILVDAQRHDIVVSKLALQSAIFTNPMFF--DKDG 114

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
             S    + +           Q +  ++          +  +    + + + +I      
Sbjct: 115 KFSAEKLKQVVAYLGGMDKLEQILAQNIQATIIPKTIVDTSIVTDYDTKLLNSIYSVNKY 174

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
           I  +  S  D K Q +   Q      +  +        K   +     D       ++ +
Sbjct: 175 IDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITKDN------FVPK 228

Query: 240 SDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
           + +         ++       +          I   R    +             TK+EK
Sbjct: 229 NKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQNRHALEQFNEYTQNIDSIKYTKLEK 288

Query: 300 HE 301
             
Sbjct: 289 QF 290


>gi|319948816|ref|ZP_08022932.1| SurA domain-containing protein [Dietzia cinnamea P4]
 gi|319437523|gb|EFV92527.1| SurA domain-containing protein [Dietzia cinnamea P4]
          Length = 246

 Score = 41.2 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/191 (12%), Positives = 59/191 (30%), Gaps = 12/191 (6%)

Query: 43  RTTINGEVITDGD----ISKRIALLKLQKI-------NGELEKIAVQELIVETLKKQEIE 91
              +NG  I+  +       +   + +Q           +L+++    LI   L  QE  
Sbjct: 52  VAEVNGTEISRDEFLSVFENQYQQMSMQAQMSGQPVDEAQLKELTTDGLIGTELLTQEAG 111

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND 151
             GI      +       A    +S ++F   +  QG+        +  Q     ++ ++
Sbjct: 112 TRGIEVSDEEIQAELAVFAERNQVSTDEFVEAMGGQGLDRAAVLDQIDKQLRVQKLITDE 171

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
           +  ++   E E+ A  +++                +P  +       ++   + E   + 
Sbjct: 172 YG-EFEVTEAEVQAAYEQVAQQQAMSGGGEAGGGGLPPLEQVRGQAEEQVRAEQEAGAME 230

Query: 212 LPKDCNKLEKF 222
                 + +  
Sbjct: 231 ELSQKLRADAD 241


>gi|282866310|ref|ZP_06275356.1| hypothetical protein SACTEDRAFT_5901 [Streptomyces sp. ACTE]
 gi|282558896|gb|EFB64452.1| hypothetical protein SACTEDRAFT_5901 [Streptomyces sp. ACTE]
          Length = 218

 Score = 41.2 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/148 (11%), Positives = 44/148 (29%), Gaps = 11/148 (7%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           +              P++S             + GE I    +  R A ++  +   E  
Sbjct: 5   RRTALAVSAATLVAAPLLSACGGEAHPGAAAVVGGERIEVSAVQARTADVRSAQEASEQS 64

Query: 74  KIA-----------VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
           +             +  LI   +  +  + +G++     V       A  +G      + 
Sbjct: 65  EQLVKKSGQLTRAKLHSLIFGRVLDRAAKDAGVSVSRKEVQQVRTAAAAQSGGDEGLRTV 124

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
            L+++ +     ++ L  +   P + + 
Sbjct: 125 MLEQRWVAPGEIEEDLRKEVQLPKLAQA 152


>gi|115314710|ref|YP_763433.1| hypothetical protein FTH_0881 [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502314|ref|YP_001428379.1| hypothetical protein FTA_0947 [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|254369242|ref|ZP_04985254.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290953593|ref|ZP_06558214.1| peptidyl-prolyl cis-trans isomerase D [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295313094|ref|ZP_06803784.1| peptidyl-prolyl cis-trans isomerase D [Francisella tularensis
           subsp. holarctica URFT1]
 gi|115129609|gb|ABI82796.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156252917|gb|ABU61423.1| hypothetical protein FTA_0947 [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|157122192|gb|EDO66332.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 477

 Score = 41.2 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/162 (9%), Positives = 43/162 (26%), Gaps = 7/162 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRI-RTTINGEVITDGDISKR 59
           M       L      +    +  IF I  +  + +   SSR     +    I+     + 
Sbjct: 1   MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60

Query: 60  IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
           +          E ++  + ++I + L   + ++  I      +      +        + 
Sbjct: 61  VQ----SATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAIFTNPMFF--DKDG 114

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
             S    + +           Q +  ++          +  +
Sbjct: 115 KFSAEKLKQVVAYLGGMDKLEQILAQNIQATIIPKTIVDTSI 156


>gi|313111450|ref|ZP_07797252.1| putative peptidyl-prolyl isomerase [Pseudomonas aeruginosa 39016]
 gi|310883754|gb|EFQ42348.1| putative peptidyl-prolyl isomerase [Pseudomonas aeruginosa 39016]
          Length = 428

 Score = 41.2 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/171 (8%), Positives = 48/171 (28%), Gaps = 14/171 (8%)

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
            +   K  + + E    +   +   V +     +  +   +  +    ++  +   E  R
Sbjct: 265 RELAGKVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRNGLAFDEAVR 324

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLE--SDLHPQFQNLLKKSQNNTTNPYVTQKGV 267
                        A        G    +      L    +  L +  +  + P       
Sbjct: 325 R---------YSLADDRDRDPPGDLGLIRPQDGRLDLLRKTALIQKADTVSQPMRIDGAF 375

Query: 268 EYIAI---CDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           E + +    D++    + +++  ++      ++       ++ L + A + 
Sbjct: 376 EIVRVRSREDRQLPLDDRSVRFEVNQAVAREQLAAQFETRLRNLLAGARVE 426


>gi|188586230|ref|YP_001917775.1| SurA domain [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350917|gb|ACB85187.1| SurA domain [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 255

 Score = 41.2 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 60/181 (33%), Gaps = 27/181 (14%)

Query: 11  DFIKLLTTYFVLIIFCIVPIVSYKSW--------------AMSSRIRTTINGEVITDGDI 56
              KL+ T   LII         ++                +   +   +NGE I   ++
Sbjct: 2   KLRKLILTALSLIILVTFAACGEEAPKDEAEPKESQDVEGEIEQDVVAVVNGEEIMYEEL 61

Query: 57  SKRIALLKLQKI-------------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           S+    L  Q                 EL  +A++ELI  TL  QE E  G+T D   V 
Sbjct: 62  SQTKEQLAFQMQMPIDQLEEQDDEMMNELRDMAMEELIGGTLLAQEAEAEGLTPDEEEVE 121

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
               Q+    G S E+    L ++ +     ++ +    +  +++     +       E 
Sbjct: 122 KNLEQYTAQFGESEEEIEENLAQEDLTMEDLREDVTQSLMITEIMDEKIEVDEDVDVSEE 181

Query: 164 P 164
            
Sbjct: 182 E 182


>gi|116053747|ref|YP_788182.1| putative peptidyl-prolyl isomerase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115588968|gb|ABJ14983.1| putative peptidyl-prolyl isomerase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 428

 Score = 41.2 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/171 (8%), Positives = 48/171 (28%), Gaps = 14/171 (8%)

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
            +   K  + + E    +   +   V +     +  +   +  +    ++  +   E  R
Sbjct: 265 RELAGKVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRNGLAFDEAVR 324

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLE--SDLHPQFQNLLKKSQNNTTNPYVTQKGV 267
                        A        G    +      L    +  L +  +  + P       
Sbjct: 325 R---------YSLADDRDRDPPGDLGLIRPQDGRLDLLRKTALIQKADTVSQPMRIDGAF 375

Query: 268 EYIAI---CDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           E + +    D++    + +++  ++      ++       ++ L + A + 
Sbjct: 376 EIVRVRSREDRQLPLDDRSVRFEVNQAVAREQLAAQFETRLRNLLAGARVE 426


>gi|229546514|ref|ZP_04435239.1| peptidylprolyl isomerase [Enterococcus faecalis TX1322]
 gi|307289957|ref|ZP_07569886.1| putative foldase protein PrsA [Enterococcus faecalis TX0411]
 gi|229308414|gb|EEN74401.1| peptidylprolyl isomerase [Enterococcus faecalis TX1322]
 gi|306499023|gb|EFM68512.1| putative foldase protein PrsA [Enterococcus faecalis TX0411]
 gi|323479869|gb|ADX79308.1| Peptidyl-prolyl cis-trans isomerase PPIASE domain protein
           [Enterococcus faecalis 62]
          Length = 342

 Score = 41.2 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/312 (8%), Positives = 74/312 (23%), Gaps = 39/312 (12%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +L     + + S  + +  S+   T+ G  IT  D   +I             + 
Sbjct: 1   MKKKLILAAAGAMAVFSLAACSSGSKDIATMKGSTITVDDFYNQIK-------EQSTSQQ 53

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           A  ++++  + +++        D         ++        E                +
Sbjct: 54  AFSQMVIYKVFEEKYGDKVTDKD-------IQKNFDEAKEQVEAQGGKFSDALKQAGLTE 106

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    Q                  + ++              +        I      + 
Sbjct: 107 KTFKKQLKQRAAYDAGLKAHLKITDEDLKTAW--------ASFHPEVEAQIIQVASEDDA 158

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKKS 253
             V+K      E            EK          GK ++  ++   P    +   K  
Sbjct: 159 KAVKK------EITDGGDFTKIAKEKSTDAATKKDGGKIKFDSQATTIPAEVKEAAFKLK 212

Query: 254 QNNTTNPYVTQK------GVEYIAICDKRDLGGE-IALKAYLSAQNTPTKI--EKHEAEY 304
               + P               + +   +  G +    +  +      TK+  +   ++ 
Sbjct: 213 DGEVSEPIAATNMQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKIAEETKLADQTFVSKV 272

Query: 305 VKKLRSNAIIHY 316
           +      A +  
Sbjct: 273 ISDELKAANVKI 284


>gi|146329199|ref|YP_001209808.1| peptidylprolyl cis-trans isomerase [Dichelobacter nodosus VCS1703A]
 gi|146232669|gb|ABQ13647.1| peptidylprolyl cis-trans isomerase [Dichelobacter nodosus VCS1703A]
          Length = 621

 Score = 41.2 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 8/152 (5%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   V     +           +    + +         +     +NG  I   D ++ +
Sbjct: 21  MADAVSEKKGNRFTYALVGVAGLGVVFIGVPILTPKYQPAT-VAQVNGISIEQHDFNRMV 79

Query: 61  ALLKLQK---INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
           + L+ +     + E+ ++A+Q++I ETL +Q   +SG       +         +     
Sbjct: 80  SHLQQRLTNIPSKEVRELALQQIINETLLRQHALQSGYLASRQDLYTAVKAQFGDN---- 135

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
           E +  +L  Q I   +++  L          +
Sbjct: 136 ETYEKWLKSQRITAQNYEAGLYHDLTVSQYYQ 167


>gi|95929247|ref|ZP_01311991.1| hypothetical protein Dace_1864 [Desulfuromonas acetoxidans DSM 684]
 gi|95134745|gb|EAT16400.1| hypothetical protein Dace_1864 [Desulfuromonas acetoxidans DSM 684]
          Length = 539

 Score = 41.2 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/262 (10%), Positives = 77/262 (29%), Gaps = 8/262 (3%)

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            + +  +       ++ + A+      T+  Q + K+ ++             +    + 
Sbjct: 264 EQGMKRIHEDGPEEDVAEAAMITFPDFTITGQILYKNALSHYQRFGGKEMKDTSFEEIVQ 323

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
                         +   + Y +                   LE ++     ++ +  + 
Sbjct: 324 RVANDIVAQSLTSMEALNRHYESKPPFQSVYFFYQRHRLIRELESKLILPYTQVSDEELS 383

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
            Y            +++      +  K A + R  L +  +  +  +      +  + + 
Sbjct: 384 HYYNEHREDYAYPVRVRYASVETRNEKMALKLREDLRQGADFYQTLS--PLSPAGIETKT 441

Query: 237 LLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA----QN 292
              + L P+ Q+L+ + Q   ++         +I + +  +   +      +      Q 
Sbjct: 442 TPLAHLIPEMQDLIDRLQPGQSDMLEVDGYFHFIRLIE--EPKVDYKPFDQIRDALKAQL 499

Query: 293 TPTKIEKHEAEYVKKLRSNAII 314
           T  K  +  AE V +LR    I
Sbjct: 500 TQAKFSQRRAELVAQLRQRTTI 521


>gi|326391780|ref|ZP_08213299.1| hypothetical protein TheetDRAFT_2540 [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992168|gb|EGD50641.1| hypothetical protein TheetDRAFT_2540 [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 238

 Score = 40.8 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/152 (11%), Positives = 44/152 (28%), Gaps = 9/152 (5%)

Query: 41  RIRTTINGEVITDGDISKRIAL-LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS 99
            +   +NG  I + +   R  L L        ++   +Q+LI E +++    K  I    
Sbjct: 65  DVIAEVNGIPIYNNEFELRKGLTLASGVQTDNIDDYILQKLIKEKVQEYLANKYNIKVSQ 124

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL--------AIQSIWPDVVKND 151
           N +N +  +  +      E      +          +Y             ++  +  + 
Sbjct: 125 NEINAYIEKEKKEFNEYPEAKKKLDELISTSGMTEDEYWNTYEKYNAKRILLFSKLYNSI 184

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                 +  ++             + Y+   +
Sbjct: 185 IEEGIKSGRLKKAEEMTNDVQNEYKRYVDSII 216


>gi|316976102|gb|EFV59445.1| peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Trichinella
           spiralis]
          Length = 422

 Score = 40.8 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 11/87 (12%), Positives = 22/87 (25%), Gaps = 13/87 (14%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI-----GKAQYLLESDLHPQFQNLLK 251
               +  +A E      K       ++             G   +++   +   FQ+   
Sbjct: 60  EKLSKANEAMEKLKAGEKFNIVASSYSED-KARQGCIVLQGDLGWMVRGSMVGPFQDAAF 118

Query: 252 KSQNNTT-------NPYVTQKGVEYIA 271
               +T         P  T+ G   I 
Sbjct: 119 GLPISTVDKPVFTDPPVKTKFGYHIIM 145


>gi|149203720|ref|ZP_01880689.1| hypothetical protein RTM1035_06628 [Roseovarius sp. TM1035]
 gi|149142837|gb|EDM30879.1| hypothetical protein RTM1035_06628 [Roseovarius sp. TM1035]
          Length = 614

 Score = 40.8 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/289 (7%), Positives = 56/289 (19%), Gaps = 38/289 (13%)

Query: 56  ISKRIALLKLQKINGELEKIAVQ-------ELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
           +      L L   +  L +  +        +   +    +         +S        +
Sbjct: 93  LEHEADRLGLSIGDENLREQILDIPSFQGLDGSFDREAYRFALDQAGLNESQFEENIRAE 152

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG-NLEMEIPANK 167
            A     +A           +              +  + +           E ++    
Sbjct: 153 TASTLVQAAALAGLQTPSTYMDTMMTYLAERRSLAFAVLDRAALQSGLPVPSEDDLKTYH 212

Query: 168 QKMKNITVR---------EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
           Q                       +L S+  ++   +    +R  +      RL +    
Sbjct: 213 QGHLPDFTTPETKTITFAWVTPAMILDSVEVDEAALREAYAERETEFNMPERRLVERLVF 272

Query: 219 LEKFA--SKIHDVSIG-----------------KAQYLLESDLHPQFQNLLKKSQNNTTN 259
            +  A       +  G                     +   DL      +          
Sbjct: 273 ADSAAATRARTRIDDGIALEMLVSERGLDMADIDMGDVSREDLGAAADPVFSAQAGEVVG 332

Query: 260 PYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
           P  T  G     +       +      +  L  +    +  +     + 
Sbjct: 333 PIDTNLGPALFRVNAVLAAQITTFEEAEPRLREELAADRARRVIEAKID 381


>gi|296446388|ref|ZP_06888333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus
           trichosporium OB3b]
 gi|296256161|gb|EFH03243.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus
           trichosporium OB3b]
          Length = 635

 Score = 40.8 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 35/391 (8%), Positives = 75/391 (19%), Gaps = 89/391 (22%)

Query: 1   MTSKVFTSLSDFIKLLTTY----FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI 56
           M   +  +    I  +       F+ + F +  I        + R    +    IT    
Sbjct: 1   MLEGLRIASQHRIGRVILGIVMGFIALSFAVWGIGDVFRGFSTKR-LAKVGSGEITVEAY 59

Query: 57  SKRIALLKLQKINGE-------------LEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
                    +                  L++  +Q +I E    Q+    G+      V 
Sbjct: 60  RGAYQNELRRLQQRARRAITNEEARRYGLDEQVLQRMITELTLDQKARALGLAIGDPDVL 119

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKY------- 156
                     G + +  S    +      + ++    +     V K              
Sbjct: 120 KLVRDENVFKGPTGKFDSDRFKQILRDAGYTERSFLAEQKSGYVRKELTDSVVGAMEPPQ 179

Query: 157 ------------------------------GNLEMEIPANKQKMKNITVREYLIRTVLFS 186
                                            E E+    +  +     +   R V+ +
Sbjct: 180 LVLEALHRFRNEARDVDYFELPAAAAGEIAAPSEEELKKYFEDREQSFRAKEYRRLVILA 239

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCN-----------KLEKFASKIHDV-SIG-- 232
                L     V +         ++  +                +  A         G  
Sbjct: 240 ATPASLAKPQEVSEEEARKLYDEVKTKRYGTAEKRHLRQLLFAAKDEADAALKRLEGGLS 299

Query: 233 ---------------KAQYLLESDLHPQF--QNLLKKSQNNTTNPYVTQKGVEYIAICDK 275
                              L   DL        +    +     P  T  G   + I   
Sbjct: 300 FEALATERKLATKDIDLGLLEAKDLGEIKLSDKVFAPEKPGFVGPVQTAFGYAILEIEKI 359

Query: 276 RD---LGGEIALKAYLSAQNTPTKIEKHEAE 303
                       +  L  +    +      +
Sbjct: 360 VPSVVTRSFEQTRDELRGEIARERAAPQVQK 390


>gi|237744140|ref|ZP_04574621.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 7_1]
 gi|289765704|ref|ZP_06525082.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. D11]
 gi|229431369|gb|EEO41581.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 7_1]
 gi|289717259|gb|EFD81271.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. D11]
          Length = 356

 Score = 40.8 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 31/260 (11%), Positives = 71/260 (27%), Gaps = 8/260 (3%)

Query: 59  RIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
           +I  L  +  N   +    +E    T        + I            + A+       
Sbjct: 2   QIKDLAPEYENLVEKTAYEEEGFNITNLDLARATANIMLGQKISKEDAEKQAKEMISRQI 61

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
             +    ++G+  N     ++    +   +           + E+       K+      
Sbjct: 62  KMAKIAKEKGVKVNENLDSISQFQDYYIGLAEKVRDDVKPTDDELLKFFNANKSKYSIPA 121

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
                L  I     +    + K   +   S L       K +  ++    +         
Sbjct: 122 TADAKLVFISVKSAKEDDDLAKEKAEKLLSELTPENFTEKGKSLSNNQDIIY-QDLGTFG 180

Query: 239 ESDLHPQFQNLLKKSQNN--TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK 296
            + +  +F+  L+   +N        T+ G     +  K++   +     ++     P  
Sbjct: 181 TTAMVKEFEEALRDVPSNTVVNKVIKTKFGYHIAYV--KKNDNNQQWEVEHILIVPYP-- 236

Query: 297 IEKHEAEYVKKLRS-NAIIH 315
            EK   E ++KL    A I 
Sbjct: 237 SEKTVTEKLEKLNKVKAEIE 256


>gi|218888773|ref|YP_002437637.1| putative peptidyl-prolyl isomerase [Pseudomonas aeruginosa LESB58]
 gi|218768996|emb|CAW24754.1| putative peptidyl-prolyl isomerase [Pseudomonas aeruginosa LESB58]
          Length = 428

 Score = 40.8 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/171 (8%), Positives = 48/171 (28%), Gaps = 14/171 (8%)

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
            +   K  + + E    +   +   V +     +  +   +  +    ++  +   E  R
Sbjct: 265 RELAGKVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRGGLAFDEAVR 324

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLE--SDLHPQFQNLLKKSQNNTTNPYVTQKGV 267
                        A        G    +      L    +  L +  +  + P       
Sbjct: 325 R---------YSLADDRDRDPPGDLGLIRPQDGRLDLLRKTALIQKADTVSQPMRIDGAF 375

Query: 268 EYIAICDKRDLG---GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           E + +  ++D      + +++  ++      ++       ++ L + A + 
Sbjct: 376 EIVRVRSRKDRQLPLDDRSVRFEVNQAVAREQLAAQFETRLRNLLAGARVE 426


>gi|208779446|ref|ZP_03246792.1| numod1 domain family protein [Francisella novicida FTG]
 gi|208745246|gb|EDZ91544.1| numod1 domain family protein [Francisella novicida FTG]
          Length = 477

 Score = 40.8 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/160 (9%), Positives = 41/160 (25%), Gaps = 7/160 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRI-RTTINGEVITDGDISKR 59
           M       L      +    +  IF I  +  + +   SSR     +    I+     + 
Sbjct: 1   MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60

Query: 60  IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                      E ++  + ++I + L   + ++  I      +         +     + 
Sbjct: 61  AQ----SATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAIFT--NSMFFDKDG 114

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNL 159
             S    + +           Q +  ++          + 
Sbjct: 115 KFSAEKLKQVVAYLGGMDKLEQILAQNIQATIIPKTIVDT 154


>gi|218680686|ref|ZP_03528583.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli CIAT 894]
          Length = 194

 Score = 40.8 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/166 (8%), Positives = 41/166 (24%), Gaps = 13/166 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI---- 56
           M   +  +   ++  L    ++  F I  +        +S    T+  + +   +     
Sbjct: 1   MFHILRRAAQTWVAKLLMLLLVASFGIWGVSRSLITGGNSTTVVTVGDQHVDVNEFHLAY 60

Query: 57  ---------SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
                       + L   Q     +E+  + +L+      Q  E   +    + +     
Sbjct: 61  QRQVASLSQQFGMRLTPEQARAFGVEQQVLAQLVAGASLDQLAEDMNLGLSEDRLAQLIA 120

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
                  ++ +        +    N  +     +     V      
Sbjct: 121 DDPAFKAVNGKFDRELFISRLRNANIRQDDYIKERSKVAVRSQVVD 166


>gi|167392097|ref|XP_001740015.1| peptidyl-prolyl cis-trans isomerase [Entamoeba dispar SAW760]
 gi|165896055|gb|EDR23595.1| peptidyl-prolyl cis-trans isomerase, putative [Entamoeba dispar
           SAW760]
          Length = 116

 Score = 40.8 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 20/86 (23%)

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
           +         +  +QK     E+               +        G     +E    P
Sbjct: 22  WRETTITRTKEQAIQKLKVLREQIVKGKKDFRQTAIIESDCSSSTQGGLLLGTIEQYQKP 81

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYI 270
                LK      ++   T  GV  I
Sbjct: 82  FADAYLKLKVGEISDIIETDSGVHII 107


>gi|255322620|ref|ZP_05363764.1| conserved hypothetical protein [Campylobacter showae RM3277]
 gi|255300181|gb|EET79454.1| conserved hypothetical protein [Campylobacter showae RM3277]
          Length = 487

 Score = 40.8 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 25/283 (8%), Positives = 71/283 (25%), Gaps = 28/283 (9%)

Query: 46  INGEVITDG-------------DISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEK 92
           +N E I                D       LK  +      + +++ +I+    +  +  
Sbjct: 111 VNDEDIVKYIIADQNFHSNGKFDKELYKNTLKRARTTESEYEESLKNVILLDKLRHALNL 170

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS--IWPDVVKN 150
                D + +   F+   + +    E  +  +           +    +   +    +  
Sbjct: 171 PANAQDIDMLTASFLMQDKISIKVVEANADEIKIDEDALKKLWEEHKNEYKTMTEFKLDT 230

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
            F+    +        +   +N    +     +           + +  K+ K       
Sbjct: 231 KFIPAISSDANTNELTEFYNENKNEYKGSDDKIKEFEAVKDEVLKDYNLKQTKKVALEEY 290

Query: 211 RLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYI 270
              K   K    +    + +         + L      L    + +T  P+  + G   +
Sbjct: 291 LKIKKDEKQADVSVSTFEDN---------ASLP--MDELKLAKKGDTLKPFEYEDGYMIV 339

Query: 271 AICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            + +     +      K  +       K ++      K+L   
Sbjct: 340 KVKEIVAPRVMSFDEAKEQILELYKEQKTKEIVEAKAKELLEK 382


>gi|120436844|ref|YP_862530.1| hypothetical protein GFO_2507 [Gramella forsetii KT0803]
 gi|117578994|emb|CAL67463.1| conserved hypothetical protein, secreted [Gramella forsetii KT0803]
          Length = 292

 Score = 40.8 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 34/318 (10%), Positives = 79/318 (24%), Gaps = 42/318 (13%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K+        K    + ++ +  +V    Y   +   +I   +N   + + DI   I
Sbjct: 1   MLKKL-----ILKKYFLGFTLIFLSLLVLSCEYFEQSDDRKIVVRVNDSYLYEEDIVALI 55

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
                 + +  +                             V+ +  + A    L     
Sbjct: 56  NEATSPEDSSII-----------------------------VSNYITRWATQQLLIDRAE 86

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
            +  + Q    +        +                         +   KN        
Sbjct: 87  LNLPETQQNEFDGLVNNYRNELYTNAYTDAVVSRDLDTSLNTNEVEEYYEKNKENFILNE 146

Query: 181 ---RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
              +    ++  N        +K  +  EE +  L     + + +A         K+ Y 
Sbjct: 147 DLVKLRYINLAKNSNNLDEIKKKLNRFNEEDQQELETMALQFKNYAMNDSVWIKTKSVYD 206

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICD---KRDLGGEIALKAYLSAQNTP 294
             + L  + ++ L K  N           V  + + D   + +        A +      
Sbjct: 207 KITPLSVEDRSSLLKKSNFME--LQDSLNVYLVYVNDVLSRNEQAPLEYASATIREILLN 264

Query: 295 TKIEKHEAEYVKKLRSNA 312
            + +    E  K +  +A
Sbjct: 265 KRKQALIKELEKDITKDA 282


>gi|256854455|ref|ZP_05559819.1| rotamase [Enterococcus faecalis T8]
 gi|256710015|gb|EEU25059.1| rotamase [Enterococcus faecalis T8]
 gi|315030576|gb|EFT42508.1| putative foldase protein PrsA [Enterococcus faecalis TX4000]
          Length = 342

 Score = 40.8 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 28/312 (8%), Positives = 75/312 (24%), Gaps = 39/312 (12%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    +L     + + S  + +  S+   T+ G  IT  D   +I             + 
Sbjct: 1   MKKKLILAAAGAMAVFSLAACSSGSKDIATMKGSTITVDDFYNQIK-------EQSTSQQ 53

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           A  ++++  + +++        D         ++        E             +  +
Sbjct: 54  AFSQMVIYKVFEEKYGDKVTDKD-------IQKNFDEAKEQVEAQGGKFSDALKQASLTE 106

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +    Q                  + ++              +        I      + 
Sbjct: 107 KTFKKQLKQRAAYDAGLKAHLKITDEDLKTAW--------ASFHPEVEAQIIQVASEDDA 158

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLKKS 253
             V+K      E            EK          GK ++  ++   P    +   K  
Sbjct: 159 KAVKK------EITDGGDFTKIAKEKSTDAATKKDGGKIKFDSQATTIPAEVKEAAFKLK 212

Query: 254 QNNTTNPYVTQK------GVEYIAICDKRDLGGE-IALKAYLSAQNTPTKI--EKHEAEY 304
               + P               + +   +  G +    +  +      TK+  +   ++ 
Sbjct: 213 DGEVSEPIAATNMQTYQTTYYVVKMTKNKAKGNDMKPYEKEIKKIAEETKLADQTFVSKV 272

Query: 305 VKKLRSNAIIHY 316
           +      A +  
Sbjct: 273 ISDELKAANVKI 284


>gi|86138848|ref|ZP_01057420.1| hypothetical protein MED193_03732 [Roseobacter sp. MED193]
 gi|85824495|gb|EAQ44698.1| hypothetical protein MED193_03732 [Roseobacter sp. MED193]
          Length = 614

 Score = 40.8 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/235 (8%), Positives = 59/235 (25%), Gaps = 19/235 (8%)

Query: 8   SLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK--L 65
            LS+    +    +++       V++ S   +      +  E +T  +  + +   +  L
Sbjct: 7   KLSNTFVWILMGLLIVGLAGFGAVNFSSSMSA---VALVGEEEVTVDEYLREMQREQRAL 63

Query: 66  QKINGE-----------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
           Q   G+           L++  +  LI       E++  GI+   + +     +      
Sbjct: 64  QAQGGQALSLSQMAAFGLDQAVLGRLISIAAIDNEVKNLGISVGDDNLRQELAEIPAFQD 123

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD---VVKNDFMLKYGNLEMEIPANKQKMK 171
            S               N  +              +V+   ++     +         + 
Sbjct: 124 PSGNFDRQTYSFALQNANLNESDFEADLRRESARTLVQGAIVVGAKMPDTLTKTLTSYIG 183

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
                 Y+  +         +     +    +   +             + +  +
Sbjct: 184 ARRSFSYVPFSPDQISLIQVVPEDAVLMAFYEANADDFTLPETKRITYARLSPDM 238


>gi|256027747|ref|ZP_05441581.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. D11]
          Length = 563

 Score = 40.8 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 71/262 (27%), Gaps = 8/262 (3%)

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
             +I  L  +  N   +    +E    T        + I            + A+     
Sbjct: 207 EMQIKDLAPEYENLVEKTAYEEEGFNITNLDLARATANIMLGQKISKEDAEKQAKEMISR 266

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
               +    ++G+  N     ++    +   +           + E+       K+    
Sbjct: 267 QIKMAKIAKEKGVKVNENLDSISQFQDYYIGLAEKVRDDVKPTDDELLKFFNANKSKYSI 326

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
                  L  I     +    + K   +   S L       K +  ++    +       
Sbjct: 327 PATADAKLVFISVKSAKEDDDLAKEKAEKLLSELTPENFTEKGKSLSNNQDIIY-QDLGT 385

Query: 237 LLESDLHPQFQNLLKKSQNN--TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP 294
              + +  +F+  L+   +N        T+ G     +  K++   +     ++     P
Sbjct: 386 FGTTAMVKEFEEALRDVPSNTVVNKVIKTKFGYHIAYV--KKNDNNQQWEVEHILIVPYP 443

Query: 295 TKIEKHEAEYVKKLRS-NAIIH 315
              EK   E ++KL    A I 
Sbjct: 444 --SEKTVTEKLEKLNKVKAEIE 463


>gi|188586655|ref|YP_001918200.1| SurA domain [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351342|gb|ACB85612.1| SurA domain [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 232

 Score = 40.8 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 73/232 (31%), Gaps = 15/232 (6%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI---- 68
           + +     + +   ++ ++   +      +   +N + + + D+ +    L   +     
Sbjct: 1   MSIKKVVLIALSALLLFVL--TACGNDDEVVAIVNDQELKEEDLDRFKQQLIQMRQLYGM 58

Query: 69  ---------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                      EL+K AV+E++ ET+  Q+ E+ GIT D   V               + 
Sbjct: 59  PVDEEDEEQMDELQKEAVEEMVTETVLLQKAEEEGITVDEELVENELEAIENQFESDEQM 118

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
             +        ++   +      I   +            ++EI   + + +    +   
Sbjct: 119 EEALDMYGLTSEDLESEIRNSYMIEELITGLVDEDDISQDDIEISEEELRERYEHEKSRA 178

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
            +         + +++    ++    E  + ++  +         +  ++ I
Sbjct: 179 TQNGEDEEDFPEFEDRKEELEQQLIDEAKQDKMQDEIINKIDELKEESEIEI 230


>gi|212694486|ref|ZP_03302614.1| hypothetical protein BACDOR_04014 [Bacteroides dorei DSM 17855]
 gi|237711177|ref|ZP_04541658.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 9_1_42FAA]
 gi|237727542|ref|ZP_04558023.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D4]
 gi|265750767|ref|ZP_06086830.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_33FAA]
 gi|212662987|gb|EEB23561.1| hypothetical protein BACDOR_04014 [Bacteroides dorei DSM 17855]
 gi|229434398|gb|EEO44475.1| peptidyl-prolyl cis-trans isomerase [Bacteroides dorei 5_1_36/D4]
 gi|229455021|gb|EEO60742.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 9_1_42FAA]
 gi|263237663|gb|EEZ23113.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_33FAA]
          Length = 710

 Score = 40.8 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/271 (9%), Positives = 66/271 (24%), Gaps = 6/271 (2%)

Query: 49  EVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
           + +T+  I +   +L++       +K  V  +       +E         S  V      
Sbjct: 435 KELTNLQIGQANVILQVLDKKAMKDKYKVAVIKRPVEFSKETYNKAYNDFSQFVAQNTTM 494

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
                      +            H    +         +      +   L      +  
Sbjct: 495 DKIIANAEESGYRLLERADFRSAEHRVGGVKGTREALKWIFAAKEGEVSPLYECGENDHL 554

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL--RLPKDCNKLEKFASKI 226
            +  +          +  + D         +K  K   E +    + +  +     +  +
Sbjct: 555 MVVALEKINPAGYRNINLVADMLKAEIIKDKKAEKLIAEMKSASSIDQVKSMANAVSDSV 614

Query: 227 HDVSIGKAQYL--LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL 284
             ++     Y+    +          K   N  T P     GV  I + +K     E   
Sbjct: 615 KHITFSAPAYVSVTRASEPALGAYASKAEINKLTGPIKGNAGVYMIQVYNKEKSAEEFDA 674

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           K       +     ++ + ++  L   A + 
Sbjct: 675 KNE-ENNLSN-MAGRYASSFINDLYKKADVK 703


>gi|42519890|ref|NP_965820.1| peptidylprolyl isomerase [Lactobacillus johnsonii NCC 533]
 gi|46396704|sp|P60810|PRSA2_LACJO RecName: Full=Foldase protein prsA 2; Flags: Precursor
 gi|41584180|gb|AAS09786.1| protease maturation protein precursor [Lactobacillus johnsonii NCC
           533]
          Length = 298

 Score = 40.8 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/288 (8%), Positives = 66/288 (22%), Gaps = 38/288 (13%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K +     L       ++     + +++       + I+     + +        +   
Sbjct: 1   MKRIIKVGALAA-SSFSLLFLAGCSSNNKEVAQYGDKKISQEQFYQEL------NSSPTS 53

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
           + I    LI   LK+    K          N +  ++        ++ S           
Sbjct: 54  KTILANMLIYGALKEAYGSKLNKDQVEADYNSYKKRYGSQFDSFLKENSYTKKSF----- 108

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                         + K     +      ++    +  +           V      ++ 
Sbjct: 109 ------KQMIELNHLSKIALKKQMKPTTSQLKEEWKDYQPKIT-------VQHISTTSRD 155

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYL---LESDLHPQFQN 248
                ++K                +   K++   +   + GK                + 
Sbjct: 156 TANTVIEK--------LNNGESFASLASKYSVDSLTSSNGGKLPAFDMQNRRYDSTFKKG 207

Query: 249 LLKKSQNNTT-NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT 295
             K   +  T  P     G E I + +    G     +  L+      
Sbjct: 208 AYKLKNDEYTKEPIKVTNGYEVIKMINHPKKGNFADKQKELTEAIYNK 255


>gi|83858361|ref|ZP_00951883.1| rotamase family protein [Oceanicaulis alexandrii HTCC2633]
 gi|83853184|gb|EAP91036.1| rotamase family protein [Oceanicaulis alexandrii HTCC2633]
          Length = 635

 Score = 40.8 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 41/135 (30%), Gaps = 15/135 (11%)

Query: 1   MTSKVFT-SLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKR 59
           M S + + + S  I  +    ++  F +  +    S   +S     +  + ++  ++ + 
Sbjct: 1   MLSLIRSLARSPIIGGMIIALLIAAFALWGVSDIFSGGGTS--ALVVGPQTVSASEVQRN 58

Query: 60  IALLKLQKINGE------------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
                 Q                 L    V+ LI ET    + ++ G+T   +T+     
Sbjct: 59  YERQLFQIQRDNPQITREQADQMGLGDSVVRRLIAETAVDAKADQMGLTISDDTLFETLR 118

Query: 108 QHARNTGLSAEDFSS 122
                       F  
Sbjct: 119 SIPAFQNPFTNQFDP 133


>gi|159030471|emb|CAO91375.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 248

 Score = 40.8 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 83/246 (33%), Gaps = 26/246 (10%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           IT  DI K++ L              ++ +I   +     E+ GI  ++  +     ++ 
Sbjct: 7   ITAEDILKQVKLSLKTS-------ELIEAIITRKMIANTAEEIGIKLEAEELQEMADKYR 59

Query: 111 RNTGLSAEDFSS-FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
           +   L +E+ +  ++ K  +  + F++++  Q +   +  + F  K             +
Sbjct: 60  KMYKLLSEEDTWAWMKKNHLSLDDFEEFVYYQGLSTKLAVHLFADKI-------EPYFYE 112

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
            +       +   VL        +++    +     +E  +      +K  +   K    
Sbjct: 113 HQLDYAGVVMHEVVL--------EDEDLAMELFYSIQEGEMSFYDVAHKYIE--DKELRR 162

Query: 230 SIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
             G    L   DL P+    +   +      P VT KGV  I + +  +   +  L+  +
Sbjct: 163 KGGYRGILSRKDLKPEISAAVFAATPPEVLKPIVTSKGVHLILVEEIIERKLDNWLRNKI 222

Query: 289 SAQNTP 294
           +     
Sbjct: 223 ATDLFN 228


>gi|153864542|ref|ZP_01997413.1| secreted protein [Beggiatoa sp. SS]
 gi|152145964|gb|EDN72588.1| secreted protein [Beggiatoa sp. SS]
          Length = 110

 Score = 40.8 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 9/105 (8%)

Query: 13  IKLLTTYFVLIIFCIVPI-VSYKSWAMSSRIRTTINGEVI----TDGDISKRIALLKLQK 67
           +       +L    I+   V          I   +N +VI        + +    L  Q 
Sbjct: 1   MNKTYQSLILYCLLIISFDVCAAQRETLDYIVAIVNDDVIVNTALQQQLRREHEKLAQQN 60

Query: 68  ----INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
                N  LEK  +  +I+  L+ Q  EK+GI  + + +   F  
Sbjct: 61  IELPPNVNLEKRVLDSMIMIALQLQLAEKTGIKVEDSHLKRSFTP 105


>gi|148547507|ref|YP_001267609.1| SurA domain-containing protein [Pseudomonas putida F1]
 gi|148511565|gb|ABQ78425.1| SurA N-terminal domain [Pseudomonas putida F1]
          Length = 213

 Score = 40.8 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 48/163 (29%), Gaps = 13/163 (7%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK-----------RIALLKLQKINGEL 72
           I  +  ++   S + +      +NG  I    + +            +  ++   +   L
Sbjct: 3   IVWLCLLLVLTSVSWADVPAARVNGVEIGLMRLERYFSEYLDAQGRAVTSIRNPGLYKRL 62

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
              A+ ELI + L  QE ++ GI      V+    +     G  A       +  G    
Sbjct: 63  RDQALDELIDKELLWQEAQRQGIAVSDEHVSAQIGEIEAAFGSPALFERRLAEA-GFDRA 121

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
            + +Y   +      V           + E+ A     +    
Sbjct: 122 QYTEYTRHEMAAQQ-VYALLSAVDAPSQGEVEAFYDANQQRLQ 163


>gi|258592100|emb|CBE68405.1| DSBA oxidoreductase precursor [NC10 bacterium 'Dutch sediment']
          Length = 355

 Score = 40.8 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 59/175 (33%), Gaps = 6/175 (3%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSY----KSWAMSSRIRTTINGEVITDGDISKRI 60
           +  S+S    +     +L+   +    ++     +  + S+    I+  VIT  +I K +
Sbjct: 4   IGKSISGHRAIAIGAALLLWTVLWQQSAFGGEPTAKPVQSKAAAKIDDYVITLDEIEKAL 63

Query: 61  --ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAE 118
              L KL+    +L +  + ELI + L   E ++ GIT +         +    +     
Sbjct: 64  APQLAKLEDQKFQLLESKLDELIEKRLLAVEAKRRGITVEDLLKAEVTSKIPEVSDAEVT 123

Query: 119 DFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
            F +    +  GD    +      +    ++    +    L       +   +  
Sbjct: 124 AFITQNRARLQGDEAGLRPKVRDYLSDQKMEEKQRIYLAGLRQHAKVERFLEEPE 178



 Score = 38.9 bits (88), Expect = 1.00,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 276 RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
           R  G E  L+  +    +  K+E+ +  Y+  LR +A +  +
Sbjct: 132 RLQGDEAGLRPKVRDYLSDQKMEEKQRIYLAGLRQHAKVERF 173


>gi|259418802|ref|ZP_05742719.1| putative peptidyl-prolyl cis-trans isomerse D [Silicibacter sp.
          TrichCH4B]
 gi|259345024|gb|EEW56878.1| putative peptidyl-prolyl cis-trans isomerse D [Silicibacter sp.
          TrichCH4B]
          Length = 611

 Score = 40.8 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 8/75 (10%), Positives = 27/75 (36%)

Query: 9  LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
          + +  K      + ++F  +      + + ++R   T+    ++  D ++ +   +    
Sbjct: 1  MKNLSKTFVWILMGLLFVGLAGFGAINVSGTTRTLATVGDATVSVDDYARALQQEQRAIQ 60

Query: 69 NGELEKIAVQELIVE 83
                I + +LI  
Sbjct: 61 AQSGRSIPLSQLISM 75


>gi|94991309|ref|YP_599409.1| foldase protein PrsA [Streptococcus pyogenes MGAS10270]
 gi|94544817|gb|ABF34865.1| Peptidyl-prolyl cis-trans isomerase [Streptococcus pyogenes
           MGAS10270]
          Length = 316

 Score = 40.8 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 30/315 (9%), Positives = 83/315 (26%), Gaps = 25/315 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +     D  ++      ++    V  +S    + ++    ++ G+ IT  D         
Sbjct: 1   MRKEAQDMKQMNKLITGVVTLATVVTLSACQSSHNNTKLVSMKGDTITVSDFYNETK--- 57

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
               N EL + A+  L++  + + +        +                 +A+ + +  
Sbjct: 58  ----NTELAQKAMLSLVISRVFETQYANKVSDKEVEKAYKQ----------TADQYGTSF 103

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
                      +    Q     +V+     +  N  +     +Q     T          
Sbjct: 104 KTVLAQSGLTPETYKKQIRLTKLVEYAVKEQAKNETISKKDYRQAYDAYTPTMTA----- 158

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             +   K ++     + +K        + K+        +     S              
Sbjct: 159 EIMQFEKEEDAKAALEAVKAEGADFAAIAKEKTIAADKKTTYTFDSGETTLPAEVVRAAS 218

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE-IALKAYLSAQNTPTKIE--KHE 301
             +   +       +P  +++    I +  K     +  A +  L       K++    +
Sbjct: 219 GLKEGNRSEIITALDPATSKRTYHIIKVTQKATKKADWKAYQKRLKDIIVTGKLKDPDFQ 278

Query: 302 AEYVKKLRSNAIIHY 316
            + + K    A +  
Sbjct: 279 NKVIAKALDKANVKI 293


>gi|229552932|ref|ZP_04441657.1| peptidylprolyl isomerase [Lactobacillus rhamnosus LMS2-1]
 gi|258540457|ref|YP_003174956.1| peptidylprolyl isomerase [Lactobacillus rhamnosus Lc 705]
 gi|229313708|gb|EEN79681.1| peptidylprolyl isomerase [Lactobacillus rhamnosus LMS2-1]
 gi|257152133|emb|CAR91105.1| Endopeptidase maturation protein prtM [Lactobacillus rhamnosus Lc
           705]
          Length = 300

 Score = 40.4 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 74/288 (25%), Gaps = 38/288 (13%)

Query: 14  KLLTTYFVLIIFC--IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE 71
           K L   F+  +    I+ +   +S    S    T +G  +T     K +           
Sbjct: 3   KKLRVPFLAAMMASSIMLLSGCQSKQADSTTVATYSGGQVTQASFYKELK-------QSP 55

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
             K  +  L++     +   KS      +                 E+F+SFL + G   
Sbjct: 56  TTKTVLANLLIYRALNKAYGKSVSAKSVDNTYN------SYKNEYGENFTSFLSQNGFSK 109

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
           + F+Q +    +    +K     K  N +++              +  ++ +L S     
Sbjct: 110 SSFRQSIRTNLLSEVALKKL--KKVTNSQLKAAWKTY------QPKVTVQHILTSDESTA 161

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD---LHPQFQN 248
            Q    +                     + ++        G       +           
Sbjct: 162 KQVISDLAA-----------GKDFTTLAKTYSIDTSTKDKGGKVSFESNSKSLDSTFKDA 210

Query: 249 LLKKSQNNTTN-PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT 295
             K      T  P     G E I +      G     K  L+A     
Sbjct: 211 AYKLKNGEYTQSPVKVTNGYEVIKMIKHPAKGTFSDSKKALTASVYSK 258


>gi|224014336|ref|XP_002296831.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968686|gb|EED87032.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 122

 Score = 40.4 bits (92), Expect = 0.31,   Method: Composition-based stats.
 Identities = 8/60 (13%), Positives = 13/60 (21%), Gaps = 2/60 (3%)

Query: 213 PKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTT-NPYVTQKGVEYI 270
                  +  +        G   +     + P F+           T     T  GV  I
Sbjct: 59  ATFEELAKTESDCSSAKRGGDLGFFGRKKMQPAFEKASFDLGVGELTEEVVDTSSGVHII 118


>gi|170739823|ref|YP_001768478.1| hypothetical protein M446_1543 [Methylobacterium sp. 4-46]
 gi|168194097|gb|ACA16044.1| conserved hypothetical protein [Methylobacterium sp. 4-46]
          Length = 303

 Score = 40.4 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 8/71 (11%), Positives = 22/71 (30%), Gaps = 2/71 (2%)

Query: 243 HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKH 300
               +        + + P  +  G   + +  +      G   ++  +S      K  + 
Sbjct: 207 PAFARAAFALPVGSWSGPVESAYGTHLVLVSSRAQGALRGYDEVRNLVSEDWHRAKEREL 266

Query: 301 EAEYVKKLRSN 311
           +  Y+ +LR  
Sbjct: 267 KDAYLGRLRDK 277


>gi|46204905|ref|ZP_00049316.2| COG0760: Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 294

 Score = 40.4 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 5/63 (7%), Positives = 21/63 (33%), Gaps = 6/63 (9%)

Query: 257 TTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEK----HEAEYVKKLRS 310
            + P   + G   + +       +     +K  +  +    ++ +       + ++  R+
Sbjct: 1   MSEPVKGRFGTVLLRVTGIEPGDIKPFDEVKDEIRKEVALRRVREGEFDKAQDAIEDARA 60

Query: 311 NAI 313
           +A 
Sbjct: 61  SAK 63


>gi|183232191|ref|XP_653673.2| peptidyl-prolyl cis-trans isomerase [Entamoeba histolytica
           HM-1:IMSS]
 gi|169802158|gb|EAL48312.2| peptidyl-prolyl cis-trans isomerase, putative [Entamoeba
           histolytica HM-1:IMSS]
          Length = 116

 Score = 40.4 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 20/86 (23%)

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
           +         +  +QK     E+               +        G     +E    P
Sbjct: 22  WRETTITRTKEQAIQKLKVLREQIVKGKKDFRQTAIIESDCSSSAQGGLLLGTIEQYQKP 81

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYI 270
                LK      ++   T  GV  I
Sbjct: 82  FADAYLKLKVGEISDIIETDSGVHII 107


>gi|89897067|ref|YP_520554.1| hypothetical protein DSY4321 [Desulfitobacterium hafniense Y51]
 gi|89336515|dbj|BAE86110.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 266

 Score = 40.4 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/232 (9%), Positives = 53/232 (22%), Gaps = 12/232 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK-------- 64
           +KL+      ++  ++           + +   INGE IT  +I + I   K        
Sbjct: 1   MKLIRAGVFFLMAALILSGCASQNYPEN-VVAVINGETITQEEIDEAINEGKLHIDLTEA 59

Query: 65  ---LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
              L   N   ++ A+ +            +          +               +  
Sbjct: 60  LRLLNGENSMSQRDAMLQAFGVDEGNMTSGQKRFFEGIERSSAKIPTANDALNSLLVEEV 119

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
            + +    G       +         +  + M +      E     +K  +I  +     
Sbjct: 120 LYQEAVKQGHEASIDRVKQILEESKRINLEAMSQDEEALREYNEYVEKTASIYHQYGFTS 179

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGK 233
              +         Q      +    +  +          +          G+
Sbjct: 180 EEDYLSKRMDRTAQAMAINTMNYEFDKVMADKLPGVDSAQIERGNAWEDYGE 231


>gi|67922823|ref|ZP_00516322.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Crocosphaera
           watsonii WH 8501]
 gi|67855316|gb|EAM50576.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Crocosphaera
           watsonii WH 8501]
          Length = 134

 Score = 40.4 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 5/104 (4%), Positives = 21/104 (20%), Gaps = 1/104 (0%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTTN 259
             +     +           +++      + G    +  +       Q L        + 
Sbjct: 14  AQELYFRIKEGENTFSELARQYSQGSEAQTGGLLGPVELNTPHPKIAQILAASRPGQLSP 73

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAE 303
           P         + +        +   +  L  +     +     +
Sbjct: 74  PTPIGDWWIILRLEKYMSAQLDDNTRQRLLNELFQGWLMAQVQK 117


>gi|84686955|ref|ZP_01014838.1| hypothetical protein 1099457000244_RB2654_01575 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84664929|gb|EAQ11410.1| hypothetical protein RB2654_01575 [Rhodobacterales bacterium
           HTCC2654]
          Length = 613

 Score = 40.4 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/198 (7%), Positives = 37/198 (18%), Gaps = 16/198 (8%)

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
                +          + F      Q  +  +   D + +    + ++ A   +  +   
Sbjct: 200 PEPTEADLEAYYEANPDDFTTPETRQITYGWLKPEDVLDEIPMDDTQLQALYDQRIDEFQ 259

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
                                   +   D  E+         +    +            
Sbjct: 260 VPERRLVERLVFGS------ADEAQAAADRIEAGETTFDQEVQARGLSLSDV-----DMG 308

Query: 236 YLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT 295
            +    L    + +          P  T  G     +     L  +      +  Q    
Sbjct: 309 DVTRRALGQAGEPIFALDAPGVVGPIETDLGPALFRMNAI--LSAQETSFEEVRDQLFEE 366

Query: 296 KIEKHEAEYVKKLRSNAI 313
                    V   R+ A 
Sbjct: 367 YAADAARRLV---RTRAT 381


>gi|210135166|ref|YP_002301605.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori P12]
 gi|210133134|gb|ACJ08125.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori P12]
          Length = 487

 Score = 40.4 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 35/320 (10%), Positives = 87/320 (27%), Gaps = 21/320 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +    +  I   +      S+++ S     +    I+  ++++  
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEY 60

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             LK             +EL  + +K   +EKS    DS          A + GL A   
Sbjct: 61  RRLKDAYAESIPN---FKELTEDQIKAMHLEKSA--LDSLINQALLRNLALDLGLGATKQ 115

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
               + +             +     + ++ +  K+    +E     QK+  +  +    
Sbjct: 116 EVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP 175

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
                     KLQ++  +        +       + K     +K   K          + 
Sbjct: 176 LEQSSLSLWAKLQDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFD 235

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
              +     +      +N  +             +  +  L    +++  +    +  K 
Sbjct: 236 ASLEKPDLKELEEYYHKNKVS------------YLDKEGKLQDFKSVQEQVKHDLSMQKA 283

Query: 298 EKHEAEYVKKLRSNAIIHYY 317
            +        L+  A +  Y
Sbjct: 284 NEKALRSYVALK-KANVQNY 302


>gi|167040994|ref|YP_001663979.1| hypothetical protein Teth514_2383 [Thermoanaerobacter sp. X514]
 gi|300913795|ref|ZP_07131112.1| conserved hypothetical protein [Thermoanaerobacter sp. X561]
 gi|307725518|ref|YP_003905269.1| hypothetical protein Thet_2431 [Thermoanaerobacter sp. X513]
 gi|166855234|gb|ABY93643.1| hypothetical protein Teth514_2383 [Thermoanaerobacter sp. X514]
 gi|300890480|gb|EFK85625.1| conserved hypothetical protein [Thermoanaerobacter sp. X561]
 gi|307582579|gb|ADN55978.1| hypothetical protein Thet_2431 [Thermoanaerobacter sp. X513]
          Length = 238

 Score = 40.4 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/154 (11%), Positives = 45/154 (29%), Gaps = 9/154 (5%)

Query: 39  SSRIRTTINGEVITDGDISKRIAL-LKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
              I   +NG  I   +   R  L L        ++   +Q+LI E +++    K  I  
Sbjct: 63  EGDIIAEVNGVPIYKNEFELRKGLALASGVQADNIDDYILQKLIREKVQEYLASKYNIKV 122

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL--------AIQSIWPDVVK 149
             N +N +  +  +      E      +          +Y             ++  +  
Sbjct: 123 SQNEINAYIEKEKKEFNEYPEAKKKLNELIAASGMTEDEYWNTYEKYNARRILLFNKLYD 182

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
           +       + +++   +         + Y+   +
Sbjct: 183 SIIEEGIKSGKLKKAEDMTNDVQNEYKRYVDSII 216


>gi|118497644|ref|YP_898694.1| hypothetical protein FTN_1053 [Francisella tularensis subsp.
           novicida U112]
 gi|195536345|ref|ZP_03079352.1| numod1 domain family protein [Francisella tularensis subsp.
           novicida FTE]
 gi|118423550|gb|ABK89940.1| outer membrane protein of unknown function [Francisella novicida
           U112]
 gi|194372822|gb|EDX27533.1| numod1 domain family protein [Francisella tularensis subsp.
           novicida FTE]
          Length = 477

 Score = 40.4 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/127 (11%), Positives = 36/127 (28%), Gaps = 5/127 (3%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRI-RTTINGEVITDGDISKR 59
           M       L      +    +  IF I  +  + +   SSR     +    I+     + 
Sbjct: 1   MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60

Query: 60  IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                      E ++  + ++I + L   + ++  I      +      +        + 
Sbjct: 61  AQ----SATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAIFTNPMFFDKDGKF 116

Query: 120 FSSFLDK 126
            +  L +
Sbjct: 117 SAEKLKQ 123


>gi|294790992|ref|ZP_06756150.1| peptidylprolyl isomerase PrsA1 [Scardovia inopinata F0304]
 gi|294458889|gb|EFG27242.1| peptidylprolyl isomerase PrsA1 [Scardovia inopinata F0304]
          Length = 301

 Score = 40.4 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 29/285 (10%), Positives = 71/285 (24%), Gaps = 37/285 (12%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K +    ++ +     ++   +   ++    T +G  ++     + +             
Sbjct: 4   KKVRFAALIGLIASSSLM-LGACGGANTTVATYSGGDVSQESFYQELK-------ESPSS 55

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           K  +  L++     Q   KS      +          +        FS++L +       
Sbjct: 56  KTILANLLIYRALDQAYGKSVTDKQVDKAYE------KYKKQYGSGFSAYLSQNNYTKAS 109

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
           FK+ +    +    +K         L+                +  ++ +L         
Sbjct: 110 FKRGIRTNLLSEVALKKLKKPSQAQLKDAWKTYH--------PQVTVQHILT-------- 153

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLL--ESDLHPQFQNLL 250
                +   +             +  + ++         GK  +L    S          
Sbjct: 154 ---QDEATARSVIAQLNAGKDFASLAKTYSLDTSSKDEGGKISFLSTDRSYDSTFKDAAY 210

Query: 251 KKSQNNTT-NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP 294
           K  +   T  P     G E I +      G   + K  L+     
Sbjct: 211 KLQKGKYTKEPVKVTDGYEVIKMVSNPGKGSFESRKKELTETVYA 255


>gi|332705502|ref|ZP_08425580.1| hypothetical protein LYNGBM3L_08150 [Lyngbya majuscula 3L]
 gi|332355862|gb|EGJ35324.1| hypothetical protein LYNGBM3L_08150 [Lyngbya majuscula 3L]
          Length = 286

 Score = 40.4 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 73/245 (29%), Gaps = 26/245 (10%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           IT  DI  ++ L              ++ ++   +     E +GI  +   +     Q  
Sbjct: 48  ITTEDIFNQVKLSYKIPD-------MIEGIVTRKVIAATAESAGIRVEIEDLQQAADQFR 100

Query: 111 RNTGLSAEDFSS-FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
               L   + +  +L    +  + F++ +    I   +V++ F  K             +
Sbjct: 101 LMNKLENSEDTWAWLQNYSMSLDDFEEVVYTNLIANKLVQHLFADKV-------EPYFFE 153

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
            +       +   VL         ++    +     +E      +  ++  +        
Sbjct: 154 HQLDYAAAVIYEVVL--------DDKDLAMELFYALDEGETSFYEIAHEYIQ--DTELRR 203

Query: 230 SIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
           S G    +   +  P+    +          P V+ +GV  I + +      +  L+A +
Sbjct: 204 SGGYRGIVKRHEFKPEISAAVFAAEPPQLLKPIVSSQGVHLILVEEIVKSELDGKLRAQI 263

Query: 289 SAQNT 293
            +   
Sbjct: 264 VSDLF 268


>gi|222148891|ref|YP_002549848.1| peptidyl-prolyl cis-trans isomerase [Agrobacterium vitis S4]
 gi|221735877|gb|ACM36840.1| peptidyl-prolyl cis-trans isomerase [Agrobacterium vitis S4]
          Length = 629

 Score = 40.4 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 62/232 (26%), Gaps = 15/232 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITD------- 53
           M   +  +   ++       ++  F I  I S      S ++   +  + +         
Sbjct: 1   MLVILRKAAGTWVAKGLLLLLVASFAIWGISSSIMSDTSDKVI-KVGSQSVNSNEFRLAY 59

Query: 54  ----GDISKRI--ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
                D+S+R    L   Q  +  +E    Q+L+      Q      +    + +     
Sbjct: 60  QRQISDLSRRFGTQLTSEQARSLGIESQVYQQLVAGAALDQLASDMNLGLSQDRLAQLIG 119

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG-NLEMEIPAN 166
                   + +        +       +Q    +     V            +  ++  +
Sbjct: 120 DDPAFKNTNGQFDRQLFTSRLRNSGIREQDYITERSKVAVRSQIVDATAEGFVPPKVLID 179

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
             K+     R      +  +  D        V K   +  +SR R P+  + 
Sbjct: 180 ALKLYRQESRSIDYLLLTTANIDPIKAPDETVLKTWFNTMKSRYRAPEYRSF 231


>gi|148255838|ref|YP_001240423.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. BTAi1]
 gi|146408011|gb|ABQ36517.1| Putative Peptidylprolyl isomerase [Bradyrhizobium sp. BTAi1]
          Length = 636

 Score = 40.4 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/216 (7%), Positives = 42/216 (19%), Gaps = 14/216 (6%)

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG 157
           +      +    A   G         L           +    + I   +V  + + K+ 
Sbjct: 190 NEQRSIDYLKLDAAQAGPIDAPSPEVLASYFDEHKAQFKAPEYRKISFVLVTPEDIGKWT 249

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
           ++  E        +   +     R V         + Q    +             +   
Sbjct: 250 DVSDEDARKLFDQRKAQMGTPEKRQVQQMTFPTMEEAQAARARIASGEVSFDELAKERNL 309

Query: 218 KLEKFASKIHDVSIGKAQYLLESDL--HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDK 275
                              + ++ +                 + P      V  + +   
Sbjct: 310 NPADL----------DLGLVTKTAILDPAVADMAFSLPTGEVSQPVKGAFNVALVKVSAI 359

Query: 276 RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           +   G+      ++               V  LR  
Sbjct: 360 QP--GQQPAYESVATDIKKEIAADRAKSQVANLRDK 393


>gi|315124196|ref|YP_004066200.1| hypothetical protein ICDCCJ07001_630 [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|315017918|gb|ADT66011.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 454

 Score = 40.4 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 27/268 (10%), Positives = 71/268 (26%), Gaps = 19/268 (7%)

Query: 3   SKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIAL 62
            K +  ++ ++  +   FV   F       +     SS    T+  E I   +   R   
Sbjct: 8   HKKYLVVTIWVSTI--AFVGAGFLGWGAYDFNLNRSSS--VATVGNEKIGFSEFDTRYRQ 63

Query: 63  L-------------KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
           +                     ++ IA+  L+ + L     +  GI  + N +       
Sbjct: 64  ILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANT 123

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
                 + +   +   +    +N   +    Q     +       +  N+  +    K  
Sbjct: 124 REFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEVITDKL--NQIFNIPSKDEELKML 181

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
             +  +++ L    +     N   N+  ++K   + +E               +     +
Sbjct: 182 ASSYFMQDALSIAKIDYDKKNIKINEEDLKKLWNEHKEDYKTKKIYEISTYFLSVSNEKI 241

Query: 230 SIGKAQYLLESDLHPQFQNLLKKSQNNT 257
              + +     D +            + 
Sbjct: 242 DDKELEKFYNQDENKLKYKDFAGKVMDF 269


>gi|115376106|ref|ZP_01463351.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|310820988|ref|YP_003953346.1| hypothetical protein STAUR_3731 [Stigmatella aurantiaca DW4/3-1]
 gi|115366921|gb|EAU65911.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|309394060|gb|ADO71519.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 245

 Score = 40.4 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 48/148 (32%), Gaps = 9/148 (6%)

Query: 40  SRIRTTINGEVITDGDISKR-----IALLKLQKINGELEKI----AVQELIVETLKKQEI 90
            R+   I G+V+T  ++        I    +Q   G L++     A++  I + L+    
Sbjct: 53  DRVVAIIEGQVLTLSELEFETRVALIQRGAMQAAAGPLDEETLKGALELAINQRLQVLSA 112

Query: 91  EKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
           ++              V   R+   S   F +FL   G       + L        ++ +
Sbjct: 113 DRLEAFTAEQAEVDERVAGFRDRFESEAGFQAFLGHAGADIQQLTEVLTRSVRAERILDS 172

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREY 178
               +    E E+    ++  +     Y
Sbjct: 173 RIRPRAQVGEAELSGYYKQHADEYPEGY 200


>gi|298387000|ref|ZP_06996554.1| membrane protein [Bacteroides sp. 1_1_14]
 gi|298260150|gb|EFI03020.1| membrane protein [Bacteroides sp. 1_1_14]
          Length = 330

 Score = 40.4 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/162 (12%), Positives = 49/162 (30%), Gaps = 7/162 (4%)

Query: 38  MSSRIRTTINGEVITDGDISKRIA--LLKLQKINGELEKIAVQELIVETLKKQEIEKSGI 95
            +  I   +N E I   D+S+     L  L  +  E++   + +LI + L  +E +K  +
Sbjct: 20  ANKEIVAEVNDETILLSDLSEASKQELFDLLNMAYEIKSKVLDDLIKKKLLDKEAKKQNM 79

Query: 96  TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS-----IWPDVVKN 150
           T +     Y  ++   N       +    ++  I  +               +   +   
Sbjct: 80  TAEQYLELYVDMRTGTNLDSIKAFYKLADNQVNIVRSQLYGSSPKTMEGELTLKNKLRSI 139

Query: 151 DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
                  +L  +    K        +  +    ++   +   
Sbjct: 140 FIQQLVDSLYSKASIKKYIFPPKQPKCVITDLCVYYRGNMDA 181


>gi|26990197|ref|NP_745622.1| hypothetical protein PP_3485 [Pseudomonas putida KT2440]
 gi|24985139|gb|AAN69086.1|AE016542_1 hypothetical protein PP_3485 [Pseudomonas putida KT2440]
          Length = 213

 Score = 40.0 bits (91), Expect = 0.40,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 49/163 (30%), Gaps = 13/163 (7%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK-----------RIALLKLQKINGEL 72
           I  +  ++   S + +      +NG  I    + +            +  ++   +   L
Sbjct: 3   IVWLCLLLVLTSVSWADVPAARVNGVEIGLMRLERYFSEYLDAQGRAVTSIRNPGLYKRL 62

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
              A+ ELI + L  QE ++ GI      V+    +     G  A       +  G    
Sbjct: 63  RDQALDELIDKELLWQEAQRQGIAVSDEQVSAQVGEIEAAFGSPALFERRLAEA-GFDRA 121

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
            + +Y   +      V           E E+ A     ++   
Sbjct: 122 QYTEYTRHEMAAQQ-VYALLSAVDAPSEGEVEAFFDANQDRLQ 163


>gi|284052496|ref|ZP_06382706.1| hypothetical protein AplaP_13593 [Arthrospira platensis str.
           Paraca]
 gi|291568772|dbj|BAI91044.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 250

 Score = 40.0 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 24/262 (9%), Positives = 70/262 (26%), Gaps = 31/262 (11%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              +   +I   +I  R+     Q +   + ++ + E I E    +E   + +       
Sbjct: 4   VYKVGETIIKAEEIPSRLKHY--QMMVPFVREVILDEAIAEITCTEEEAAAALE------ 55

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                  A++   S E   ++L+   +     +             +  +  K  +  + 
Sbjct: 56  ----KFAAQHQLTSPEAQKAWLNLNKLTLEEAQAIAERPIKIEKFKRERWTNKVESYFIT 111

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
             ++   +    +R                  Q                         ++
Sbjct: 112 RKSSLDHVVYSLIRTKNPGLAHELYFRISEGEQE------------------FSEAAREY 153

Query: 223 ASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           +      + G    +  +  HP   + L          P    + +  I +        +
Sbjct: 154 SEGPESRTGGIMGPVSLAQPHPAISKLLAVSQPGQLWPPRPLSEWMVIIRLEKFIPAQLD 213

Query: 282 IALKAYLSAQNTPTKIEKHEAE 303
            +++ +L  +   T + +  A+
Sbjct: 214 ESMRRHLIDELFETWLREEIAK 235


>gi|260494276|ref|ZP_05814407.1| peptidylprolyl isomerase [Fusobacterium sp. 3_1_33]
 gi|260198422|gb|EEW95938.1| peptidylprolyl isomerase [Fusobacterium sp. 3_1_33]
          Length = 563

 Score = 40.0 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 71/262 (27%), Gaps = 8/262 (3%)

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
             +I  L  +  N   +    +E    T        + I            + A+     
Sbjct: 207 EMQIKDLAPEYENLVEKTAYEEEGFNITNLDLARATANIMLGQKISKEDAEKQAKEMISR 266

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
               +    ++G+  N     ++    +   +           + E+       K+    
Sbjct: 267 QIKMAKIAKEKGVKVNENLDSISQFQDYYIGLAEKVRDDVKLTDDELLKFFNANKSKYSI 326

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
                  L  I     +    + K   +   S L       K +  ++    +       
Sbjct: 327 PATADAKLVFISVKSAKEDDDLAKEKAEKLLSELTPENFTEKGKSLSNNQDIIY-QDLGT 385

Query: 237 LLESDLHPQFQNLLKKSQNN--TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP 294
              + +  +F+  L+   +N        T+ G     +  K++   +     ++     P
Sbjct: 386 FGTTAMVKEFEEALRDVPSNTVVNKVIKTKFGYHIAYV--KKNDNNQQWEVEHILIVPYP 443

Query: 295 TKIEKHEAEYVKKLRS-NAIIH 315
              EK   E ++KL    A I 
Sbjct: 444 --SEKTVTEKLEKLNKVKAEIE 463


>gi|254712135|ref|ZP_05173946.1| peptidyl-prolyl cis-trans isomerase C [Brucella ceti M644/93/1]
          Length = 85

 Score = 40.0 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 251 KKSQNNTTN-PYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAEYVK 306
           + +   TT  P  ++ G   + + D+R   +      +   ++     +   K  ++Y+ 
Sbjct: 6   RMTPGETTANPIESRFGYHIVRL-DRRVEGEELPFDYVADKIAGWLEASTWSKAVSQYIA 64

Query: 307 KLRSNAII 314
            L + A I
Sbjct: 65  ILAAEAEI 72


>gi|148555082|ref|YP_001262664.1| hypothetical protein Swit_2167 [Sphingomonas wittichii RW1]
 gi|148500272|gb|ABQ68526.1| hypothetical protein Swit_2167 [Sphingomonas wittichii RW1]
          Length = 288

 Score = 40.0 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/102 (11%), Positives = 35/102 (34%), Gaps = 1/102 (0%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           ++   V      + +++        ++   +NG  I+   +S     L L      +++ 
Sbjct: 9   ISACLVAGAGLGLILLAGCGKTPKGQVVAIVNGNDISMQQLSVEAQDLPLPI-PETIDRR 67

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA 117
           A+ + I++ +  +E+E              F+   +      
Sbjct: 68  ALSKAILQAVIDRELEVQAAREQRLDKTPQFLALKQRNEEEL 109


>gi|284097541|ref|ZP_06385612.1| secreted protein [Candidatus Poribacteria sp. WGA-A3]
 gi|283830948|gb|EFC34987.1| secreted protein [Candidatus Poribacteria sp. WGA-A3]
          Length = 178

 Score = 40.0 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 16/178 (8%), Positives = 54/178 (30%), Gaps = 10/178 (5%)

Query: 20  FVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL------KLQKINGELE 73
           ++  +       +  +  +   I   +N + IT  ++   + +                +
Sbjct: 4   YITFLILFCIGGNVYAQTLIDSIIAVVNEDAITRSELEDELRIATVFRIRTAPISTTAEQ 63

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           +  +  +I      QE E+ GI                +   ++E       +  + +  
Sbjct: 64  RTGLNTIINRKFVLQEAERLGIIVTERNTQVAAKIAEISAKYASETVF----QNVLQEAQ 119

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
            ++      ++  ++ ++F  +  ++      ++    +IT+            P N 
Sbjct: 120 LEKEAVEAQVYDQLIYDEFFRRIFSMPSXAKRSRDSPSHITIPIVPSLLYHQQSPSNH 177


>gi|119485676|ref|ZP_01619951.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lyngbya sp. PCC
           8106]
 gi|119457001|gb|EAW38128.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lyngbya sp. PCC
           8106]
          Length = 250

 Score = 40.0 bits (91), Expect = 0.41,   Method: Composition-based stats.
 Identities = 30/262 (11%), Positives = 70/262 (26%), Gaps = 31/262 (11%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              +   VI   +I   +   + Q +   L ++ +   I E   +   E+     +    
Sbjct: 4   VYKVGETVIKGEEIPALLK--RYQLMPQFLREVIIDGAITE--IECSPEEQKTALEKFAA 59

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
            +                 +  D Q I +   K     Q+ W + V+N F+ +  NL+  
Sbjct: 60  QHQLTSSEAQEAWLKSQNLTTEDLQAIAERPVKLEKFKQNTWSNKVENYFISRKSNLDHV 119

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           + +  +   +    E   R                                       ++
Sbjct: 120 VYSLIRTKNSGLAHELYFRV--------------------------LEGEQSLGEAAREY 153

Query: 223 ASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           +      + G    +  S  HP   + L          P    + +  I +        +
Sbjct: 154 SEGPESRTGGLLGPVPLSQPHPAISKLLSVSQPGQLWAPRPLAEWMVIIRLEKFIPAQLD 213

Query: 282 IALKAYLSAQNTPTKIEKHEAE 303
            +++  L  +   T + +    
Sbjct: 214 ESMRRRLIDELFETWLREQLTA 235


>gi|261319793|ref|ZP_05958990.1| peptidyl-prolyl cis-trans isomerase [Brucella ceti M644/93/1]
 gi|261292483|gb|EEX95979.1| peptidyl-prolyl cis-trans isomerase [Brucella ceti M644/93/1]
          Length = 82

 Score = 40.0 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 249 LLKKSQNNTTN-PYVTQKGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAEY 304
           + + +   TT  P  ++ G   + + D+R   +      +   ++     +   K  ++Y
Sbjct: 1   MERMTPGETTANPIESRFGYHIVRL-DRRVEGEELPFDYVADKIAGWLEASTWSKAVSQY 59

Query: 305 VKKLRSNAII 314
           +  L + A I
Sbjct: 60  IAILAAEAEI 69


>gi|254243138|ref|ZP_04936460.1| hypothetical protein PA2G_03937 [Pseudomonas aeruginosa 2192]
 gi|126196516|gb|EAZ60579.1| hypothetical protein PA2G_03937 [Pseudomonas aeruginosa 2192]
          Length = 428

 Score = 40.0 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/171 (8%), Positives = 48/171 (28%), Gaps = 14/171 (8%)

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
            +   K  + + E    +   +   V +     +  +   +  +    ++  +   E  R
Sbjct: 265 RELAGKVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRGGLAFDEAVR 324

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLE--SDLHPQFQNLLKKSQNNTTNPYVTQKGV 267
                        A        G    +      L    +  L +  +  + P       
Sbjct: 325 R---------YSLADDRDRDPPGDLGLIRPQDGRLDLLRKTALIQKADTVSQPMRIDGAF 375

Query: 268 EYIAI---CDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           E + +    D++    + +++  ++      ++       ++ L + A + 
Sbjct: 376 EIVRVRSREDRQLPLDDRSVRFEVNQAVAREQLAAQFETRLRNLLAGARVE 426


>gi|15595225|ref|NP_248717.1| hypothetical protein PA0027 [Pseudomonas aeruginosa PAO1]
 gi|9945847|gb|AAG03417.1|AE004442_4 hypothetical protein PA0027 [Pseudomonas aeruginosa PAO1]
          Length = 428

 Score = 40.0 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/171 (8%), Positives = 48/171 (28%), Gaps = 14/171 (8%)

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
            +   K  + + E    +   +   V +     +  +   +  +    ++  +   E  R
Sbjct: 265 RELAGKVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRGGLAFDEAVR 324

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLE--SDLHPQFQNLLKKSQNNTTNPYVTQKGV 267
                        A        G    +      L    +  L +  +  + P       
Sbjct: 325 R---------YSLADDRDRDPPGDLGLIRPQDGRLDLLRKTALIQKADTVSQPMRIDGAF 375

Query: 268 EYIAI---CDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           E + +    D++    + +++  ++      ++       ++ L + A + 
Sbjct: 376 EIVRVRSREDRQLPLDDRSVRFEVNQAVAREQLAAQFETRLRNLLAGARVE 426


>gi|297544426|ref|YP_003676728.1| hypothetical protein Tmath_0987 [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842201|gb|ADH60717.1| conserved hypothetical protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 238

 Score = 40.0 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 43/154 (27%), Gaps = 9/154 (5%)

Query: 39  SSRIRTTINGEVITDGDISKRIAL-LKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
              I   +NG  I   +   R  L L        ++   +Q+LI E +++    K  I  
Sbjct: 63  EGDIIAEVNGIPIYKNEFELRKGLALASGVQADNIDDYILQKLIREKVQEYLASKYNIKV 122

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL--------AIQSIWPDVVK 149
             N +N +  +  +      E      +          +Y             ++  +  
Sbjct: 123 SQNEINAYIEKEKKEFNEYPEAKKKLNELIAASGMTEVEYWNTYEKYNARRILLFNKLYN 182

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
           +         E++             ++Y    V
Sbjct: 183 SIIEEGIKRGELKKVEQMTSDVQNEHKKYFDSIV 216


>gi|209528083|ref|ZP_03276560.1| conserved hypothetical protein [Arthrospira maxima CS-328]
 gi|209491474|gb|EDZ91852.1| conserved hypothetical protein [Arthrospira maxima CS-328]
          Length = 250

 Score = 40.0 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 23/262 (8%), Positives = 70/262 (26%), Gaps = 31/262 (11%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              +   +I   +I  R+     Q +   + ++ + E I +    +E   + +       
Sbjct: 4   VYKVGETIIKAEEIPSRLKHY--QMMVQFVREVILDEAIADITCTEEEAAAALE------ 55

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                  A++   S E   ++L+   +     +             +  +  K  +  + 
Sbjct: 56  ----KFAAQHQLTSPEAQKAWLNLNKLTLEEAQAIAERPIKIEKFKRERWTNKVESHFIT 111

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
             ++   +    +R                  Q                         ++
Sbjct: 112 RKSSLDHVVYSLIRTKNPGLAHELYFRISEGEQE------------------FSEAAREY 153

Query: 223 ASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           +      + G    +  +  HP   + L          P    + +  I +        +
Sbjct: 154 SEGPESRTGGIMGPVSLAQPHPAISKLLAVSQPGQLWPPRPLSEWMVIIRLEKFIPAQLD 213

Query: 282 IALKAYLSAQNTPTKIEKHEAE 303
            +++ +L  +   T + +  A+
Sbjct: 214 ESMRRHLIDELFETWLREEIAK 235


>gi|322391823|ref|ZP_08065288.1| peptidyl-prolyl cis-trans isomerase [Streptococcus peroris ATCC
           700780]
 gi|321145303|gb|EFX40699.1| peptidyl-prolyl cis-trans isomerase [Streptococcus peroris ATCC
           700780]
          Length = 313

 Score = 40.0 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 28/313 (8%), Positives = 73/313 (23%), Gaps = 41/313 (13%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K L    + ++          S   +  I     G+VIT+    + +        N    
Sbjct: 3   KKLLAGAITLLSVATLAACSNSSQGADLISMK--GDVITEHQFFEEVK-------NNATA 53

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           +  +  + ++ + +++        +         +   ++       +    +       
Sbjct: 54  QQVLLNMTIQKVFEKQYGSEVSDKEVEDAVAEEQKKYGDSYQIVLSRAGMTAE------- 106

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                  Q     +V+          E E+     K         +   ++    ++K +
Sbjct: 107 ---SRKAQIRTSKLVEYAVK---KAAESELTDENYKKAYDEYTPEVTAQIIKLDSEDKAK 160

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES-DLHPQFQNLLKK 252
                 K          +      K +         + G+  +   S +L    +     
Sbjct: 161 EVLAKAKESGADFAQLAKDNSTDEKTKA--------NGGEITFDSASTELPDVVKKAAFA 212

Query: 253 -SQNNTTNPYVTQK------GVEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEKHE--A 302
              N  ++                + +  K +        K  L       K        
Sbjct: 213 LDVNGVSDVITAPGTQAYSSSFYIVKLTKKTEKSSNIEDYKEKLKTVILTQKQNDATFVQ 272

Query: 303 EYVKKLRSNAIIH 315
             + K    A I 
Sbjct: 273 GVISKELQAANIK 285


>gi|261208875|ref|ZP_05923312.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           TC 6]
 gi|289566923|ref|ZP_06447329.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           D344SRF]
 gi|294616439|ref|ZP_06696226.1| foldase protein PrsA [Enterococcus faecium E1636]
 gi|260077377|gb|EEW65097.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           TC 6]
 gi|289161290|gb|EFD09184.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           D344SRF]
 gi|291590690|gb|EFF22412.1| foldase protein PrsA [Enterococcus faecium E1636]
          Length = 303

 Score = 40.0 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 27/313 (8%), Positives = 90/313 (28%), Gaps = 44/313 (14%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +   F+ +   +   +         +   +  G  I++ ++   +  ++           
Sbjct: 1   MKKRFLALAIVLGTGLLSGCTNAGEKTAVSYKGGTISEQEVMDSLKKMQG-------ADS 53

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           AVQ+LI   + +   +K G    +  ++  + Q  +  G S +        Q     + +
Sbjct: 54  AVQQLI---VYQVFEDKYGDDVSTKEIDSQYDQTKKQLGDSFDS-------QLKSAGYTE 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           Q            +          + ++          +    +   ++    ++  ++ 
Sbjct: 104 QTFKDSIKQSLAFQEGLKKHIKLTDEDLKTAW-----ESFHPEVEAQIIQVASEDDAKDV 158

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQF--QNLLKK 252
                          +        +  ++        GK ++   +   P    +   K 
Sbjct: 159 KKAA----------DKGDDFSKLAKDKSTDTTTKEDGGKVKFDSTTTTVPAEVKEAAFKL 208

Query: 253 SQNNTTNPYVTQKG------VEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEK--HEAE 303
                ++   +            + +  K++ G ++   K  L    T TK+     + +
Sbjct: 209 KDGQVSDVITSTNASTYTTEYYVVKMVKKQNKGNDMDKYKKELKEIATDTKLSDSTFQNK 268

Query: 304 YVKKLRSNAIIHY 316
            + ++  +A +  
Sbjct: 269 VIGEVLKDANVKI 281


>gi|104781925|ref|YP_608423.1| hypothetical protein PSEEN2850 [Pseudomonas entomophila L48]
 gi|95110912|emb|CAK15628.1| conserved hypothetical protein; putative signal peptide
           [Pseudomonas entomophila L48]
          Length = 213

 Score = 40.0 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 43/153 (28%), Gaps = 11/153 (7%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISK-----------RIALLKLQKINGELEKIAVQEL 80
                  +      +NG  I    + +            +A ++   +   L + A+ EL
Sbjct: 11  GVTPAIFAEAPVARVNGVEIGALRLERYFTEYLQAQGRAVASIRNPNLYQRLREQALDEL 70

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I + L  QE  + GI  D   V     +     G  A       D     D+        
Sbjct: 71  IDKELLWQEARRQGIAIDDEQVRARVAEVEAAFGSPAVFARRLEDAGFDHDSFADYTRHE 130

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
            +      +   + +    E+    +  + +  
Sbjct: 131 MAAQEAFARLTVVEEPSAAEIAAFYDANRQRLQ 163


>gi|91774761|ref|YP_544517.1| hypothetical protein Mfla_0406 [Methylobacillus flagellatus KT]
 gi|91708748|gb|ABE48676.1| hypothetical protein Mfla_0406 [Methylobacillus flagellatus KT]
          Length = 55

 Score = 40.0 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 253 SQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKI 297
            +  T  P  T+ G   I + + R  +      +K  L  Q    KI
Sbjct: 6   PKGLTPEPIRTRFGWHIIELKNIRKAEPPPFEEVKNELIRQLQVRKI 52


>gi|153811643|ref|ZP_01964311.1| hypothetical protein RUMOBE_02035 [Ruminococcus obeum ATCC 29174]
 gi|149832384|gb|EDM87469.1| hypothetical protein RUMOBE_02035 [Ruminococcus obeum ATCC 29174]
          Length = 504

 Score = 40.0 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 32/340 (9%), Positives = 85/340 (25%), Gaps = 47/340 (13%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSS--RIRTTINGEVITDGDISKRIALLKLQKI-- 68
           +   T    L     V +++          +   T++G  I  G +S  +   + Q    
Sbjct: 8   MTKRTAVAALTGVMAVGMLTGCGEKKLDGTKTVATVDGTEIPLGIVSLSVREGQAQTEAM 67

Query: 69  -----------------------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
                                    +  + +++++ +  + K++     +    +     
Sbjct: 68  YKSFMGGQDYSIWSMDAEDGKTYGEQAVEQSLKDVELMYIMKEKAADYNVEVTDDDEQKI 127

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
               A     ++E+    L         + +    +S   D +  D      + E +  +
Sbjct: 128 ADAAAAFMAANSEETLQELAVSEDQIKTYLELQTYKSRMHDPLIADVDKDVSDEEAQQSS 187

Query: 166 NKQ---------KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
                         +    +E   + +          +   + K + D+  S        
Sbjct: 188 FDYVSISTADLSDDEIKQKKEDAQKILDDLKAAGSDGDLNEIAKSVDDSYSSVSGTFDTN 247

Query: 217 NKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP--YVTQKGVEYIAICD 274
               K  S     S         S    +   +L+  ++    P    T      + +  
Sbjct: 248 EDAAKEDSDEESDSS-----SSSSAYPDEVMKVLRTLKDGEIGPDVIETDTSYYVVKLDK 302

Query: 275 KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
             D       K  + +            +++      A I
Sbjct: 303 VNDEEATETKKQSIISTRENKLYTDTTEKWLDD----ADI 338


>gi|293365248|ref|ZP_06611965.1| peptidyl-prolyl cis-trans isomerase [Streptococcus oralis ATCC
           35037]
 gi|307703788|ref|ZP_07640729.1| foldase protein prsA [Streptococcus oralis ATCC 35037]
 gi|315613010|ref|ZP_07887921.1| peptidyl-prolyl cis-trans isomerase [Streptococcus sanguinis ATCC
           49296]
 gi|291316698|gb|EFE57134.1| peptidyl-prolyl cis-trans isomerase [Streptococcus oralis ATCC
           35037]
 gi|307622623|gb|EFO01619.1| foldase protein prsA [Streptococcus oralis ATCC 35037]
 gi|315315120|gb|EFU63161.1| peptidyl-prolyl cis-trans isomerase [Streptococcus sanguinis ATCC
           49296]
          Length = 313

 Score = 40.0 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 34/313 (10%), Positives = 81/313 (25%), Gaps = 41/313 (13%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K L    + ++          S      I     G+VIT+    + +        N    
Sbjct: 3   KKLMAGAITLLSVATLAACSNSSEGKDLISMK--GDVITEHQFFEEVK-------NNPTA 53

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           +  +  + ++ + +Q+        D +       +   ++  S    +            
Sbjct: 54  QQVLLNMTIQKVFEQQYGSEVTDKDVDDAVAEEQKKYGDSYNSVLQRAGMT--------- 104

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
             +    Q     +V+          E E+     +    +    +   ++    ++K +
Sbjct: 105 -PETRKAQIRTSKLVELAVK---KAAESELTDEAYQKAFESYTPDVTAQIIRLDNEDKAK 160

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES-DLHPQFQNLLKK 252
                 K          +   + +K ++        + G+  +   S +L  Q +     
Sbjct: 161 EVLEKAKAEGADFAQLAKDNSNDDKTKE--------NGGEITFDSASTELPEQVKKAAFA 212

Query: 253 SQNNTTNPYVTQKG-------VEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEK--HEA 302
              N  +  +T  G          I +  K +        K  L       K        
Sbjct: 213 LDVNGVSDVITATGTQAYSSQFYIIKVTKKTEKSSNIEDYKEKLKTIILTQKQNDSAFVQ 272

Query: 303 EYVKKLRSNAIIH 315
             + K    A I 
Sbjct: 273 GVIGKELQAANIK 285


>gi|261209199|ref|ZP_05923591.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           TC 6]
 gi|289566116|ref|ZP_06446551.1| foldase prsA [Enterococcus faecium D344SRF]
 gi|260076745|gb|EEW64480.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           TC 6]
 gi|289162061|gb|EFD09926.1| foldase prsA [Enterococcus faecium D344SRF]
          Length = 328

 Score = 40.0 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 32/320 (10%), Positives = 86/320 (26%), Gaps = 45/320 (14%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +   +K  +          V  ++  S   +++   T+ G  IT  D      L      
Sbjct: 1   MQILMKKKSIILAATSALAVLTLAACS-GDTNKDIATMKGGTITVSDFYDEAKL------ 53

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
                +  VQ +I+  +      K G       V+  + + A++ G + E        Q 
Sbjct: 54  -ESSNQSLVQRMIIYKV---FNNKYGDKVTDKQVDAEYDKQAKSLGDTFES-------QL 102

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
               + K             +          + ++          +    +   ++    
Sbjct: 103 EAAGYTKDTYKEYIRNNLAFEAGLKAHVDITDDDLKTAW-----KSFHPEVEAQIIKLSS 157

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF- 246
           +++ ++                         +  ++        GK ++   +   P   
Sbjct: 158 EDEAKDVKKSA----------DDGDDFSKLAKDKSTDTETKEDGGKVKFDSTTTTIPAEV 207

Query: 247 -QNLLKKSQNNTTNPYVTQK------GVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKI- 297
            +   K      ++   T            + +   ++ G ++   K  L    T TK+ 
Sbjct: 208 KEAAFKLKDGEISDVITTTNPTSYATEYYVVKMVKNQNKGNDMDKYKDQLKDIATETKLS 267

Query: 298 -EKHEAEYVKKLRSNAIIHY 316
                 + + +   +A +  
Sbjct: 268 DNAFTTKVIGEELKDANVKI 287


>gi|311028971|ref|ZP_07707061.1| hypothetical protein Bm3-1_00161 [Bacillus sp. m3-13]
          Length = 402

 Score = 40.0 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 17/238 (7%), Positives = 63/238 (26%), Gaps = 6/238 (2%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTIN--GEVIT----DG 54
           M   +    S  +        L  F +   +        ++   T+N  GE +T      
Sbjct: 1   MLHSMKKLFSGKLSRTKLAITLTSFIVFSTILGFGVFHGTKAAVTVNVDGEEVTVRTHAK 60

Query: 55  DISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
            ++  +  L ++    +  + +   ++ ++++        +    +   +     A    
Sbjct: 61  TVADILKELDIEVHPEDKLEPSKDTVVSDSMQIVWDPAKEVKLVIDDEEHAMYTTAETVQ 120

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
               +    + +           L    +       +  L  G  + ++ +    + +  
Sbjct: 121 DFLAERDIDIKEHDKVSQDLNTPLKDNLVIAIEKAFEVTLDVGGEKQQVWSTSTTVADFL 180

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
            +  +    L  +  +  +             E    + ++  +          +  G
Sbjct: 181 EQHDITVNDLDRVEPSLEELVAKDTVVNITRVEKVTDVVEEPIEFGVVTQNDSSLDKG 238


>gi|306825386|ref|ZP_07458726.1| peptidyl-prolyl cis-trans isomerase [Streptococcus sp. oral taxon
           071 str. 73H25AP]
 gi|304432324|gb|EFM35300.1| peptidyl-prolyl cis-trans isomerase [Streptococcus sp. oral taxon
           071 str. 73H25AP]
          Length = 339

 Score = 40.0 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 29/309 (9%), Positives = 81/309 (26%), Gaps = 37/309 (11%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
             KV  ++             I    V  ++  S +   +   ++ G+VIT+    + + 
Sbjct: 15  IDKVTLTVKGVNMKKKIMAGAITLLSVATLAACSNSSEGKDLISMKGDVITEHQFFEEVK 74

Query: 62  LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
                  N   +++ +   I +  ++Q   +       + V     ++  +     +   
Sbjct: 75  ------NNPTAQQVLLNMTIQKVFEQQYGSEVTDKDVDDAVAEEQKKYGDSYNSVLQRAG 128

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
              +               Q     +V+          E E+     +    +    +  
Sbjct: 129 MTPET-----------RKAQIRTSKLVELAVK---KAAESELTDEAYQKAFESYTPDVTA 174

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES- 240
            ++    ++K +      K          +   + +K ++        + G+  +   S 
Sbjct: 175 QIIRMDNEDKAKEVLEKAKAEGADFAQLAKDNSNDDKTKE--------NGGEITFDSAST 226

Query: 241 DLHPQFQNLLKK-SQNNTTNPYVT------QKGVEYIAICDKRDLGGE-IALKAYLSAQN 292
           +L  Q +        N  ++                + +  K +        K  L    
Sbjct: 227 ELPEQVKKAAFALDVNGVSDVITATGTQAYSNQFYIVKVTKKTEKSSNLEDYKEKLKTII 286

Query: 293 TPTKIEKHE 301
              K     
Sbjct: 287 LTQKQNDSA 295


>gi|194335718|ref|YP_002017512.1| hypothetical protein Ppha_0584 [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308195|gb|ACF42895.1| conserved hypothetical protein [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 129

 Score = 40.0 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 10/85 (11%), Positives = 24/85 (28%), Gaps = 4/85 (4%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL----QKINGELEKIAVQELIV 82
           I     +       R+   +NG  IT  ++             + +  +  +  +  L+ 
Sbjct: 14  IAGCSPHAGDGSDGRVAAVVNGVEITQREVDFLYQRASAPGASESVKRDQRRSILAGLVR 73

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFV 107
             L  Q+  K  +          + 
Sbjct: 74  AELLAQQAAKMKLDQSPEFPIALYN 98


>gi|301595770|ref|ZP_07240778.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii
          AB059]
          Length = 91

 Score = 40.0 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 35/88 (39%), Gaps = 9/88 (10%)

Query: 14 KLLTTYFVLIIFCIVPIVSYKSWAM-SSRIRTTINGEVITDGDISKRIALLKLQKI---- 68
          K L  +F      ++   S  S+A  +  +   ++  VI   D+ + +A    +      
Sbjct: 4  KHLKQFFKATTLAVLISSSMHSFAQPTDEVVAIVDNSVILKSDLEQGMAEAAHELQAQKK 63

Query: 69 ----NGELEKIAVQELIVETLKKQEIEK 92
                 L+   + +LI+   + ++++K
Sbjct: 64 EVPPQQYLQFQVLDQLILRQAQLEQVKK 91


>gi|317124069|ref|YP_004098181.1| hypothetical protein Intca_0929 [Intrasporangium calvum DSM 43043]
 gi|315588157|gb|ADU47454.1| hypothetical protein Intca_0929 [Intrasporangium calvum DSM 43043]
          Length = 178

 Score = 40.0 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 40/132 (30%), Gaps = 1/132 (0%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
                L+    V +++   +    +    +NG+VI + ++ +    L+        E I 
Sbjct: 14  IAATALVGLTAVTLLAGCGFEARQQGAAVVNGQVIHEDEVEETAQQLR-DAKFDFPENIV 72

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           V  L+   L +  I +S       T           T  + E  S+    Q         
Sbjct: 73  VTALVAAPLLEDAISESKSWEPDATYASAIAAMPGATETTKEFVSAVALIQSGLMTDQDV 132

Query: 137 YLAIQSIWPDVV 148
                ++    +
Sbjct: 133 QRYRDNLAKADI 144


>gi|289613632|emb|CBI59450.1| unnamed protein product [Sordaria macrospora]
          Length = 216

 Score = 40.0 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 12/162 (7%), Positives = 33/162 (20%), Gaps = 1/162 (0%)

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
              +      +      F+S                 ++        +    +    + +
Sbjct: 19  PKDWEVRHSQSKNLPYYFNSATKTSCWEPPSGTDVDKLKIYMAKFHSSPAQKQQQQPQGK 78

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           I      +K+   R              +   Q     +     ES              
Sbjct: 79  IRCAHLLVKHNQSRRPSSWRSSNITRTKEEARQILEGIKKSMELESESEPISLGKLARTE 138

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVT 263
           +      + G   Y    ++  +F++          +    T
Sbjct: 139 SDCSSARTEGDLGYFGRGEMQKEFEDAAFALKPGEISGIVDT 180


>gi|84998046|ref|XP_953744.1| hypothetical protein [Theileria annulata]
 gi|65304741|emb|CAI73066.1| hypothetical protein, conserved [Theileria annulata]
          Length = 1755

 Score = 40.0 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 34/328 (10%), Positives = 91/328 (27%), Gaps = 33/328 (10%)

Query: 5    VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
            VFTS    + LL  + +          +  S  + S+++  ING++I + ++      L 
Sbjct: 1438 VFTSPEIMLTLLRDFLI-------SPYNLSSVKVGSKVKCKINGQII-ETEVKNVKQTLN 1489

Query: 65   LQ--KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
                 INGE+    ++   ++ + +   +    +   +           N  L+ E    
Sbjct: 1490 GLNFNINGEIPDETLELTELKRVIEDVYKIGHNSVSISYDKKIKWVDCWNLDLNDEIKPK 1549

Query: 123  FLDKQGIGDNHFKQYLAIQSIWPDV------VKNDFMLKYGNLEMEIPANKQKMKNITVR 176
              +  G   +              +      +              +    + +      
Sbjct: 1550 LEEVFGKIKSKGLNQEHKDKFLNLIQDPKYGIFEYVEEYGLRSHEWVYEYWRYIPRPISL 1609

Query: 177  EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF-----------ASK 225
              +   +              ++  I +                +            A+ 
Sbjct: 1610 NEIREKLRNDYYRTPKGVWAEIKLLISNCINFNETSSNYSKIAREVDVNLDNLMINMAND 1669

Query: 226  IHDVSIGKAQY-LLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIAL 284
             +   I +  +  + + + P  Q   +  + N  N    + G     +  +R +  +  +
Sbjct: 1670 YNWTVIFEHIWPFIRNFVKPSVQPSSQPHRKNEINQVEQEFGEY--NVSKRRKVNVQEPV 1727

Query: 285  KA--YLSAQNTPTKIE-KHEAEYVKKLR 309
            +    +  +      E K   + +  LR
Sbjct: 1728 RRSSRIVQKVEKQVEEVKVRKKTLYNLR 1755


>gi|322374457|ref|ZP_08048971.1| foldase protein PrsA [Streptococcus sp. C300]
 gi|321279957|gb|EFX56996.1| foldase protein PrsA [Streptococcus sp. C300]
          Length = 313

 Score = 40.0 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 34/313 (10%), Positives = 81/313 (25%), Gaps = 41/313 (13%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K L    + ++          S      I     G+VIT+    + +        N    
Sbjct: 3   KKLMAGAITLLSVATLAACSNSSEGKDLISMK--GDVITEHQFFEEVK-------NNPTA 53

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           +  +  + ++ + +Q+        D +       +   ++  S    +            
Sbjct: 54  QQVLLNMTIQKVFEQQYGSEVTDKDVDDAVAEEQKKYGDSYNSVLQRAGMT--------- 104

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
             +    Q     +V+          E E+     +    +    +   ++    ++K +
Sbjct: 105 -PETRKAQIRTSKLVELAVK---KAAESELTDEAYQKAFESYTPDVTAQIIRLDNEDKAK 160

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES-DLHPQFQNLLKK 252
                 K          +   + +K ++        + G+  +   S +L  Q +     
Sbjct: 161 EVLEKAKAEGADFAQLAKDNSNDDKTKE--------NGGEITFDSASTELPEQVKKAAFA 212

Query: 253 SQNNTTNPYVTQKG-------VEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEK--HEA 302
              N  +  +T  G          I +  K +        K  L       K        
Sbjct: 213 LDVNGVSDVITATGTQAYSSQFYIIKVTKKTEKSSNIEDYKEKLKTIILTQKQNDSAFVQ 272

Query: 303 EYVKKLRSNAIIH 315
             + K    A I 
Sbjct: 273 GVIGKELQAANIK 285


>gi|118475291|ref|YP_891759.1| putative peptidyl-prolyl cis-trans isomerase D,-like protein
           [Campylobacter fetus subsp. fetus 82-40]
 gi|118414517|gb|ABK82937.1| putative peptidyl-prolyl cis-trans isomerase D, homolog
           [Campylobacter fetus subsp. fetus 82-40]
          Length = 485

 Score = 40.0 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 51/211 (24%), Gaps = 17/211 (8%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI- 60
             K    L   I + T  FV   F         S   +S     +    IT  +  K   
Sbjct: 5   MQKHKKYLVVTIWISTIAFVGAGFVGWGAYDLNSNRATS--VAKVGNRNITIQEFQKTYS 62

Query: 61  ------------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
                          + Q     L++IA+Q LI E L    ++  G+      +      
Sbjct: 63  NLYNYYSSLSEGKFTQEQADEMGLDRIALQRLIQENLFLNYVDDIGLMVSKEELIAALTS 122

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
                     D S + D         K +     +   ++ N F         +   +  
Sbjct: 123 DEGFQVDGKFDKSRYEDTLKRARITPKDFENE--LTNKLLLNKFFDAINLKTNQTDLDIL 180

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
                   +  I  +        +       
Sbjct: 181 ASSYFMEDKVSINIIKADKNSISVDENELKD 211


>gi|76800245|ref|ZP_00781993.1| Foldase protein prsA precursor [Streptococcus agalactiae 18RS21]
 gi|76584547|gb|EAO61412.1| Foldase protein prsA precursor [Streptococcus agalactiae 18RS21]
          Length = 257

 Score = 39.7 bits (90), Expect = 0.52,   Method: Composition-based stats.
 Identities = 33/263 (12%), Positives = 69/263 (26%), Gaps = 27/263 (10%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQEL 80
            L +  +  + +      +     T+ G+ IT  D   ++             K A Q +
Sbjct: 11  FLTLMSVATLAACSGKTSNGTNVVTMKGDTITVSDFYDQVK----------TSKAAQQSM 60

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           +   L +    + G       V+  + + A+  G S                   +    
Sbjct: 61  LTLILSRVFDTQYGDKVSDKKVSEAYNKTAKGYGNSFSSAL-------SQAGLTPEGYKQ 113

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           Q     +V+            E             + Y   T +  I  +       V K
Sbjct: 114 QIRTTMLVEYAVKEAAKKELTEA------NYKEAYKNYTPETSVQVIKLDAEDKAKSVLK 167

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP 260
            +K       ++ K+         +    S G    L +  +   F+       +  +  
Sbjct: 168 DVKADGADFAKIAKEKTTATDKKVEYKFDSAG--TTLPKEVMSAAFKLDKNGVSDVVSTV 225

Query: 261 YVTQK--GVEYIAICDKRDLGGE 281
             T        I + DK +   +
Sbjct: 226 DSTTYKTSYYIIKVTDKTEKKSD 248


>gi|332706783|ref|ZP_08426844.1| hypothetical protein LYNGBM3L_23620 [Lyngbya majuscula 3L]
 gi|332354667|gb|EGJ34146.1| hypothetical protein LYNGBM3L_23620 [Lyngbya majuscula 3L]
          Length = 318

 Score = 39.7 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 19/236 (8%), Positives = 59/236 (25%), Gaps = 2/236 (0%)

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           I  +    E  K+                +       ++           D +       
Sbjct: 67  IEVSAGTIESLKTTWQRQWGREPLPQELESLVDNYVRDEVLYQEALALGLDQNDLIVRRR 126

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
                  +  D        +  + A   +  +                    +++   + 
Sbjct: 127 VVQKMQFLVEDVSALREPSDQVLQAYLGEHADRYTIPGKFSFAQIYFSREMRRDRTDAEA 186

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP 260
           R    +       +   KL   +      ++  A+ L  +      Q +   ++N    P
Sbjct: 187 RDLLNQLQANPNLERFQKLGDRSMLPITYNLASAEILSNTFGGSFGQEMAGVTENGWQGP 246

Query: 261 YVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
           + +  G   + + D           +K  +       + ++ + ++ ++LR    +
Sbjct: 247 FHSAYGSHLVYVSDIEPGHNATLAEVKRDVRRDWMRDQRQQLDEQFYQQLRDRYTV 302


>gi|329120542|ref|ZP_08249206.1| hypothetical protein HMPREF9123_2637 [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327461281|gb|EGF07613.1| hypothetical protein HMPREF9123_2637 [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 248

 Score = 39.7 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 5/77 (6%)

Query: 235 QYLLESDLHPQFQNLL-KKSQNNTT-NPYVTQKGVEYIAI---CDKRDLGGEIALKAYLS 289
            ++  + L P+F        +   +  P   Q     + I       +      LK  ++
Sbjct: 166 GFVALAQLPPEFAAAAATMQRGQISHKPVAFQGSYYLLKIAATEQAENAPPFEELKDQIA 225

Query: 290 AQNTPTKIEKHEAEYVK 306
           A     K ++  A  +K
Sbjct: 226 ALLKQRKAQEQIATLLK 242


>gi|253989301|ref|YP_003040657.1| hypothetical protein PAU_01821 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780751|emb|CAQ83913.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 303

 Score = 39.7 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 26/302 (8%), Positives = 77/302 (25%), Gaps = 21/302 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K    ++D +K        +I C + I+S  +    +          I   +++++ 
Sbjct: 1   MMRKNIIGITDIMKFFIAIKSFLITCGLLILSGCASVQQTPTL------QILSPELTQQG 54

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
            ++ L+  N       + +L                   N  ++          L   + 
Sbjct: 55  VVIDLKTGNVLTPDELLNQL------ASHQRIIVGEKHDNPYHHQIELWLVQQLLLKREP 108

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
            S L +    D   +       +     +    ++   ++  +  +      +     + 
Sbjct: 109 GSVLLEMITPDQQERVNKVKSWL-----QTKPTVRESRIKDLLEWHAGWPWELYGELVME 163

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
                         +  ++    +    +  +    +   + A+ I D   G+      S
Sbjct: 164 LMYQPYPLLAANLARSEIKAAYNNPPVLQGNISVSEDVKAQIAATIKDAHGGEITERQLS 223

Query: 241 DLHPQFQNLLKKSQNNTTN-PYV---TQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK 296
            +    Q   ++        P        G     +        +++ +          K
Sbjct: 224 AMTTIQQMRDRRMAEQLLKAPVPATLIAGGYHATKVMGVPLHIKDLSPREDFVVLIIAEK 283

Query: 297 IE 298
             
Sbjct: 284 AN 285


>gi|254511419|ref|ZP_05123486.1| conserved hypothetical protein [Rhodobacteraceae bacterium KLH11]
 gi|221535130|gb|EEE38118.1| conserved hypothetical protein [Rhodobacteraceae bacterium KLH11]
          Length = 613

 Score = 39.7 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 33/360 (9%), Positives = 77/360 (21%), Gaps = 82/360 (22%)

Query: 31  VSYKSWAMSSRIRTTINGEVITDG----DISKRIALLKLQKING---------ELEKIAV 77
               S   + R    +  E ++      ++ + I  ++ Q              L+++A+
Sbjct: 27  FGATSLTGTVRTVAQVGDESVSVDAYFRELQREIRAVEAQTGQAMQIAQAHDLGLDQLAL 86

Query: 78  QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY 137
             LI       E+ + GI+     +    VQ     G++          Q          
Sbjct: 87  SRLIALAALDNEVAQLGISIGDENLQNEIVQIPAFQGVNGTFDREAYRFQLEQVGMTDAE 146

Query: 138 LAIQSIWPD---VVKNDFMLKYGN-----------------------------------L 159
                       +V+   +                                         
Sbjct: 147 FESDLRKESARTIVQGAVIGGVEMPLALTEALANYVLARRSFTLATLSAEALETPVPQPT 206

Query: 160 EMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL--------- 210
           + +I A   +  +        R     +    L +   + +        +          
Sbjct: 207 DAQIQAFYDENTDRFTLPRTKRLTYAILSPEMLLDAVEIDEDALRRLYDQRAGQYLQPER 266

Query: 211 ----RLPKDCNKLEKFASKIHDVSIG----------------KAQYLLESDLHPQFQNLL 250
               RLP    +    A    +V                       +   DL      + 
Sbjct: 267 RLVERLPYPSEEAATEALAQLEVGGADFEQLVRDRQLELSDVDLGDVTREDLGDAADTVF 326

Query: 251 KKSQNNTTNPYVTQKGVEYIAICDK--RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
               ++   P  T  G     I      +       +  L  +    +  +      + +
Sbjct: 327 AAGIDDVVGPLPTVFGPALFRINGTLAENNVSFEEARPELREELAADRARRLIEAQAEDI 386


>gi|157869307|ref|XP_001683205.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68224089|emb|CAJ04157.1| putative peptidyl-prolyl cis-trans isomerase [Leishmania major
           strain Friedlin]
          Length = 440

 Score = 39.7 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 232 GKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICD 274
           G    + +     +  +   K  +   + P  TQ G+  +  CD
Sbjct: 397 GDLGVVEKGTFADEIDEAAFKLRRGEVSAPVETQLGIHLLYRCD 440


>gi|254511696|ref|ZP_05123763.1| conserved hypothetical protein [Rhodobacteraceae bacterium KLH11]
 gi|221535407|gb|EEE38395.1| conserved hypothetical protein [Rhodobacteraceae bacterium KLH11]
          Length = 73

 Score = 39.7 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 7/64 (10%), Positives = 14/64 (21%), Gaps = 2/64 (3%)

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
                 P  +  G   I +             +++ +         E       + L  N
Sbjct: 1   MGEWAGPIQSGYGKHLIQVLAVEPGRLPPLNDIRSAVLQDWQRAMGEDLAQAQYETLADN 60

Query: 312 AIIH 315
             I 
Sbjct: 61  YTIE 64


>gi|294622205|ref|ZP_06701265.1| foldase protein PrsA [Enterococcus faecium U0317]
 gi|291598247|gb|EFF29340.1| foldase protein PrsA [Enterococcus faecium U0317]
          Length = 323

 Score = 39.7 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 33/316 (10%), Positives = 85/316 (26%), Gaps = 45/316 (14%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K  T          V  ++  S   +++   T+ G  IT  D      L          
Sbjct: 1   MKKNTIILAATSALAVLTLAACS-GDTNKDIATMKGGTITVSDFYDEAKL-------ESS 52

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            +  VQ +I+  +      K G       V+  + + A++ G + E        Q     
Sbjct: 53  NQSLVQRMIIYKV---FNNKYGDKVTDKQVDAEYDKQAKSLGDTFES-------QLEAAG 102

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
           + K             +          + ++          +    +   ++    +++ 
Sbjct: 103 YTKDTYKEYIRNNLAFEAGLKAHVDITDDDLKTAW-----KSFHPEVEAQIIKLSSEDEA 157

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF--QNL 249
           ++                         +  ++        GK ++   +   P    +  
Sbjct: 158 KDVKKSA----------DDGDDFSKLAKDKSTDTETKEDGGKVKFDSTTTTIPAEVKEAA 207

Query: 250 LKKSQNNTTNPYVTQK------GVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKI--EKH 300
            K      ++   T            + +   ++ G ++   K  L    T TK+     
Sbjct: 208 FKLKDGEISDVITTTNPTSYATEYYVVKMVKNQNKGNDMDKYKDQLKDIATETKLSDNAF 267

Query: 301 EAEYVKKLRSNAIIHY 316
             + + +   +A +  
Sbjct: 268 TTKVIGEELKDANVKI 283


>gi|149927433|ref|ZP_01915688.1| hypothetical protein LMED105_01067 [Limnobacter sp. MED105]
 gi|149823925|gb|EDM83150.1| hypothetical protein LMED105_01067 [Limnobacter sp. MED105]
          Length = 267

 Score = 39.7 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 37/303 (12%), Positives = 79/303 (26%), Gaps = 51/303 (16%)

Query: 18  TYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD---ISKRIALLKLQKINGELEK 74
             F+ +   I  +  +     +S      N  V+T+     + +++     Q  +    +
Sbjct: 8   LGFIAVATLIGVLEWHSGEQAAS------NELVVTEAQRAFVREQVLQAGTQANSSASFE 61

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
            A+   I E +  +E  K G+  D   V    VQ  R         +   + Q       
Sbjct: 62  QAMATYIDEEILYREGLKLGLEKDDLIVKRRVVQKMRFLLEDMTPIAPPTEAQLQTWL-G 120

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
           +     Q+    V  + F  +    +           ++   + +         D++L +
Sbjct: 121 QNAQRYQTEQTIVFDHHFFSRGKRGDEAFYHAGIARDDLLAGQKVTSDPFPLQTDSELLS 180

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ 254
           +  + K                               G        DL            
Sbjct: 181 RERIAKEF-----------------------------GVITSATIFDLP----------L 201

Query: 255 NNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
           +  + P  +  GV    +  K            + L +     + E      +  LR+  
Sbjct: 202 DEWSPPVQSPLGVHLFKVSQKNAGRTMTLEEAGSQLRSDLIAAQREAVNDAGLAALRATY 261

Query: 313 IIH 315
            I 
Sbjct: 262 TIK 264


>gi|331266535|ref|YP_004326165.1| foldase protein PrsA [Streptococcus oralis Uo5]
 gi|326683207|emb|CBZ00825.1| foldase protein PrsA [Streptococcus oralis Uo5]
          Length = 313

 Score = 39.7 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 34/313 (10%), Positives = 80/313 (25%), Gaps = 41/313 (13%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K L    + ++          S      I     G+VIT+    + +        N   +
Sbjct: 3   KKLMAGAITLLSVATLAACSNSSEGKDLISMK--GDVITEHQFFEEVK------NNPTAQ 54

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           ++ +   I +  ++Q   +       + V     ++  +     +      +        
Sbjct: 55  QVLLNMTIQKVFEQQYGSEVTDKDVDDAVAEEQKKYGDSYNSVLQRAGMTPET------- 107

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                  Q     +V+          E E+     +         +   ++    ++K +
Sbjct: 108 ----RKAQIRTSKLVELAVK---KAAESELTDEAYQKAFEAYTPDVTAQIIRMDNEDKAK 160

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES-DLHPQFQNLLKK 252
                 K          +   + +K ++        + G+  +   S +L  Q +     
Sbjct: 161 EVLEKAKAEGADFAQLAKDNSNDDKTKE--------NGGEITFDSASTELPEQVKKAAFA 212

Query: 253 SQNNTTNPYVTQKG-------VEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEK--HEA 302
              N  +  +T  G          I +  K +        K  L       K        
Sbjct: 213 LDVNGVSDVITATGTQAYSSQFYIIKVTKKTEKSSNIEDYKEKLKTIILTQKQNDSAFVQ 272

Query: 303 EYVKKLRSNAIIH 315
             + K    A I 
Sbjct: 273 GVIGKELQAANIK 285


>gi|149913756|ref|ZP_01902288.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter sp.
           AzwK-3b]
 gi|149812040|gb|EDM71871.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter sp.
           AzwK-3b]
          Length = 613

 Score = 39.7 bits (90), Expect = 0.65,   Method: Composition-based stats.
 Identities = 9/132 (6%), Positives = 24/132 (18%), Gaps = 9/132 (6%)

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
             +      + ++ +             +         +    G              + 
Sbjct: 474 WRQQATVAALTEKAEPLVADLRNGRDFADLGLDTLDAQNLTRQG----FQPDTPTEFIET 529

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT----KIEKHEAEY 304
           +    Q            V  + +   R    +    A L             +      
Sbjct: 530 VFDMEQGGI-ALIEGTTRVFILRLDAVRPPSSDNEELARLRTALRDQSASSMAQDFYQLL 588

Query: 305 VKKLRSNAIIHY 316
              +R+ A I  
Sbjct: 589 ATDIRTRAEIEI 600


>gi|170076538|ref|YP_001733177.1| hypothetical protein SYNPCC7002_G0068 [Synechococcus sp. PCC 7002]
 gi|169887400|gb|ACB01108.1| conserved hypothetical protein [Synechococcus sp. PCC 7002]
          Length = 244

 Score = 39.7 bits (90), Expect = 0.66,   Method: Composition-based stats.
 Identities = 23/256 (8%), Positives = 66/256 (25%), Gaps = 16/256 (6%)

Query: 63  LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
           ++++     LE+  +  L+V+     ++ +  I     T       +  +  ++ + F  
Sbjct: 1   MRIRIREQNLEQDDLIRLLVQYQLLPQLAREIILDQEITSLEEIEYNPEDIQIAIQQFVK 60

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
            L  +                  D+                   + +  N     ++ R 
Sbjct: 61  KLQLKSESQLQIW------LQNNDLQPEQLSAIATRPLKIEKLKQVRWGNNIEAYFMERK 114

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
                    L          +                 +++      + G    +  S  
Sbjct: 115 DQLDRMIYSLIRTQDAGIAQELYFRILDDATAFAPLAGQYSQGAEAQTGGLVGPVEMSTP 174

Query: 243 HPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHE 301
           HPQ    L          P    +    + + +      +  ++           I +  
Sbjct: 175 HPQITAVLKNAQPGALKAPMKIGEWYVVLRLEEFLPAQLDELMR--------QRLINEQF 226

Query: 302 AEYVKK-LRSNAIIHY 316
            +++K+ +++   I Y
Sbjct: 227 EKWLKESVKNQLTIQY 242


>gi|254373010|ref|ZP_04988499.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570737|gb|EDN36391.1| conserved hypothetical protein [Francisella novicida GA99-3549]
          Length = 477

 Score = 39.7 bits (90), Expect = 0.66,   Method: Composition-based stats.
 Identities = 15/162 (9%), Positives = 42/162 (25%), Gaps = 7/162 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRI-RTTINGEVITDGDISKR 59
           M       L      +    +  IF I  +  + +   SSR     +    I+     + 
Sbjct: 1   MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFLQY 60

Query: 60  IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                      E ++  + ++I + L   + ++  I      +      +        + 
Sbjct: 61  AQ----SATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAIFTNPMFF--DKDG 114

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
             S    + +           Q +  ++          +  +
Sbjct: 115 KFSAEKLKQVVAYLGGMDKLEQILAQNIQATIIPKTIVDTSI 156


>gi|162450855|ref|YP_001613222.1| hypothetical protein sce2583 [Sorangium cellulosum 'So ce 56']
 gi|161161437|emb|CAN92742.1| hypothetical protein predicted by Glimmer/Critica [Sorangium
           cellulosum 'So ce 56']
          Length = 327

 Score = 39.7 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 22/293 (7%), Positives = 70/293 (23%), Gaps = 7/293 (2%)

Query: 27  IVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLK 86
           ++   +  +  +   +   +    +    +++  A    Q    +    AV++ +     
Sbjct: 22  VLSTSARGAAPLPPDVAARVGASDVAVDSVARIAA--AQQIPPAQARDAAVRDALWAAEA 79

Query: 87  KQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPD 146
           +    +               +        A +     D++             +     
Sbjct: 80  RARGLEQEPDVRREISLVLARRMLHRLKEEAANAGPVTDEELRVATERHWLDLDRPEGYR 139

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV--QKRIKD 204
            V     L     E      K     I       R V       +             + 
Sbjct: 140 TVHAVVKLPEDAGEATRDRAKAIADAIRTAVLSSREVAQRTEPPRAAGTPQPPPDPAAEA 199

Query: 205 AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTTNPYVT 263
              +   +P +  ++   A      +        +       +      ++ + T P  +
Sbjct: 200 FISAAKGVPAEGFEVVAQALSPVTEAGRVLTPETQQFDPAFSRAAASLVARGDLTAPVTS 259

Query: 264 QKGVEYIAICDKRDLGGEIALKAY--LSAQNTPTKIEKHEAEYVKKLRSNAII 314
             GV  I + ++         +    +  +    +    ++ +++  R    I
Sbjct: 260 AFGVHVIMLLERIPAQVVPVEERRGLVHDEVVADRARAAQSRFLEVARREPKI 312


>gi|323453183|gb|EGB09055.1| hypothetical protein AURANDRAFT_7806 [Aureococcus anophagefferens]
          Length = 111

 Score = 39.7 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 6/63 (9%), Positives = 16/63 (25%), Gaps = 2/63 (3%)

Query: 212 LPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQKGVE-Y 269
                +  +K +        G         +   F++     +    +    T  GV   
Sbjct: 49  AAAFRDACKKRSDCGSCRESGDLGDFQRGQMQKPFEDATFALAVGEMSGVVDTDSGVHAI 108

Query: 270 IAI 272
           + +
Sbjct: 109 LRL 111


>gi|218248033|ref|YP_002373404.1| hypothetical protein PCC8801_3275 [Cyanothece sp. PCC 8801]
 gi|257060643|ref|YP_003138531.1| hypothetical protein Cyan8802_2846 [Cyanothece sp. PCC 8802]
 gi|218168511|gb|ACK67248.1| conserved hypothetical protein [Cyanothece sp. PCC 8801]
 gi|256590809|gb|ACV01696.1| hypothetical protein Cyan8802_2846 [Cyanothece sp. PCC 8802]
          Length = 256

 Score = 39.3 bits (89), Expect = 0.69,   Method: Composition-based stats.
 Identities = 20/251 (7%), Positives = 68/251 (27%), Gaps = 21/251 (8%)

Query: 53  DGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
             ++ + I  LK +    +  +  ++E I+  +      ++    ++        Q  + 
Sbjct: 8   SIEVDELINCLKKELKIKDFCQQLLEERIINKV---SQARNLTVTETEIQTEADKQRCQM 64

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
               A D  ++L++Q I   +++  +  + +   + ++ F         +   N  ++  
Sbjct: 65  KLEKAADTLAWLEEQMITPENWEDGIRDRLLRAKLAESLFSQNVDKFFAQNKLNFDQVVL 124

Query: 173 ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
             +     +         + +   F Q       + + +L                   G
Sbjct: 125 YQIIIPYEKLAWEIFYQIEEEEMSFYQAAHLYDIDEKRKLH-----------------CG 167

Query: 233 KAQYLLESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ 291
               L   ++       +         +P    K    + +           +   +  +
Sbjct: 168 YEGKLYRWEIHPNLAAAIFAAQPGEIISPIKIDKQYHILLVEKFISAELTPEIYQEILNK 227

Query: 292 NTPTKIEKHEA 302
                +     
Sbjct: 228 MFDEWLNSELN 238


>gi|332710150|ref|ZP_08430103.1| hypothetical protein LYNGBM3L_48230 [Lyngbya majuscula 3L]
 gi|332351108|gb|EGJ30695.1| hypothetical protein LYNGBM3L_48230 [Lyngbya majuscula 3L]
          Length = 243

 Score = 39.3 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 20/192 (10%), Positives = 52/192 (27%), Gaps = 4/192 (2%)

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
           + +  FL+K  + D   KQ    Q            ++   +E                E
Sbjct: 54  QAYQQFLEKNQLIDETAKQAWLKQRGMNPAQLEALAVRSILIEKYKQQTWSHKLESYFLE 113

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
              +         + ++ G  Q+     +E         +   +++      + G    +
Sbjct: 114 RKGQLDRVIYSLIRTKDPGVAQEIYFRIQEGEESF---ADLAREYSQGPEAQTGGLIGPV 170

Query: 238 LESDL-HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK 296
             S       Q L          P    + +  + +        + +++  L  +   T 
Sbjct: 171 ELSVPHPALAQMLRLSQPGQLFPPTRLGEWLLIVRLEKFMPAQLDDSMRQRLLNECFSTW 230

Query: 297 IEKHEAEYVKKL 308
           + +   + +  L
Sbjct: 231 LSEQLNQQLAAL 242


>gi|308183127|ref|YP_003927254.1| conserved hypothetical secreted protein [Helicobacter pylori
           PeCan4]
 gi|308065312|gb|ADO07204.1| conserved hypothetical secreted protein [Helicobacter pylori
           PeCan4]
          Length = 487

 Score = 39.3 bits (89), Expect = 0.70,   Method: Composition-based stats.
 Identities = 35/320 (10%), Positives = 88/320 (27%), Gaps = 21/320 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +    +  I   +      S+++ S     +    I+  ++++  
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEY 60

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             LK             +EL  + +K   +EKS    DS          A + GL A   
Sbjct: 61  RRLKDAYAESIPN---FKELTEDQIKAMHLEKSA--LDSLINQALLRNLALDLGLGATKQ 115

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
               + +             +     + ++ +  K+    +E     QK+  +  +    
Sbjct: 116 EVAKEIRKTSVFQKDGVFNEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP 175

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
                     KLQ++  +     +  +       + K     +K   K          + 
Sbjct: 176 LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPISFKTRSLYFD 235

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
              +     +      +N  +             +  +  L    +++  +    +  K 
Sbjct: 236 ASLEKPNLKELEEYYHKNKVS------------YLDKEGKLQDFKSVQEQVKHDLSMQKA 283

Query: 298 EKHEAEYVKKLRSNAIIHYY 317
            +        L+  A +  Y
Sbjct: 284 NEKALRSYIALK-KANVQNY 302


>gi|189219654|ref|YP_001940295.1| Peptidyl-prolyl cis-trans isomerase [Methylacidiphilum infernorum
           V4]
 gi|189186512|gb|ACD83697.1| Peptidyl-prolyl cis-trans isomerase [Methylacidiphilum infernorum
           V4]
          Length = 507

 Score = 39.3 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 22/286 (7%), Positives = 64/286 (22%), Gaps = 30/286 (10%)

Query: 50  VITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
           ++ + ++ + I  L   +  G+ +      L    +      +         V +  +  
Sbjct: 101 IVPEEEVVRFIQQLPFLQKEGKYD----ASLYKRFVSSFLTPQGISEERFLQVMHEELVI 156

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
            +              +           + +  +  ++      ++    E+E       
Sbjct: 157 GKVKKALVAPIEVIPKEVDEIYAMTFGQVRVVLLRMNLEDFKKNIQIQPEEIEKEYKSHP 216

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
                      +      P          ++  +   +   +      +  +        
Sbjct: 217 KDPDYYTPEKRKAGFVFFPFPAELQNLKGKELEEAKRKILEQAEDFAIEASRQVENSAAN 276

Query: 230 -----SIGKAQYLLESDLHPQFQNLLKKSQNN-------------TTNPYVTQKGVEYIA 271
                      Y L                                + P  T KG   + 
Sbjct: 277 FEQLAKEKNLSYQLTEPFPADKPPSAIVEPEKFSKTVFGLSLDKAVSEPVETSKGYYVVV 336

Query: 272 IC--DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +   +K  L     +K+ +  +    K +K      +K   +A I 
Sbjct: 337 LLNVEKGSLRPFDEIKSTVEEKL---KRKKAFEALFQK---SAQIE 376


>gi|99080985|ref|YP_613139.1| putative peptidyl-prolyl cis-trans isomerse D [Ruegeria sp.
          TM1040]
 gi|99037265|gb|ABF63877.1| putative peptidyl-prolyl cis-trans isomerse D [Ruegeria sp.
          TM1040]
          Length = 611

 Score = 39.3 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 8/73 (10%), Positives = 27/73 (36%)

Query: 9  LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
          +    K      + ++F  +      + + ++R   T+    ++  D ++ +   +    
Sbjct: 1  MKKLSKTFVWILMGLLFVGLAGFGAINVSGTTRTLATVGDATVSVDDYARALQQEQRAIQ 60

Query: 69 NGELEKIAVQELI 81
              + I + +LI
Sbjct: 61 AQSGQSIPLSQLI 73


>gi|186685932|ref|YP_001869128.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nostoc punctiforme
           PCC 73102]
 gi|186468384|gb|ACC84185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nostoc punctiforme
           PCC 73102]
          Length = 266

 Score = 39.3 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 16/189 (8%), Positives = 42/189 (22%), Gaps = 8/189 (4%)

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
             F  +  +      Q   ++          F  +   +E                +Y  
Sbjct: 62  EQFYQQWDLNSEEKIQSWCLRYGLTQEQLELFATRKLRVEKFKQITWGHQLESYFLKYKR 121

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
                     +  N+G   +      E             +++      + G    +   
Sbjct: 122 HFDKVIYSLIRTDNRGTANELYFRITEGEQSF---AELAHEYSQGPEAETSGIIGPVEVG 178

Query: 241 DLHPQFQNLL-KKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEK 299
            + P F  LL          P    +    + +        +     ++  +      E 
Sbjct: 179 TITPNFAQLLCTSQVGIVQAPVAFGESWVIVRVEKFITAQLD----NFMRQRLLQENFET 234

Query: 300 HEAEYVKKL 308
              + + +L
Sbjct: 235 WFQQQLSQL 243


>gi|237752705|ref|ZP_04583185.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376194|gb|EEO26285.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 485

 Score = 39.3 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 60/222 (27%), Gaps = 19/222 (8%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
             K    L   I +    F+   F      S+ + + +      +    IT   + +  A
Sbjct: 5   MQKHKKYLIVTIWISAIAFLGAGFVGWGAYSFSNTSNA---AAVVGDRQITIDRLQREYA 61

Query: 62  LL-------------KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
            L               Q     +E+ A+  LI   L        G+      +      
Sbjct: 62  RLYNVYNQLFNGNLDNEQAKKLGIEEQALNTLISRALMLNYAHDVGLRISQEEIIQTLTA 121

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
                     D + +           K +         + K D +L+     +EI     
Sbjct: 122 MDIFQNNGKFDETIYKRLLADNQMRPKDFEEELGEGILLQKLDALLEIPLTPLEIQT--- 178

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
             + +   ++L   VL          +  ++K  ++ ++   
Sbjct: 179 ISEAVFSEDHLKIQVLNDSEITFNPTEEEIKKYWEENKDIYQ 220


>gi|42527165|ref|NP_972263.1| basic membrane protein, putative [Treponema denticola ATCC 35405]
 gi|41817589|gb|AAS12174.1| basic membrane protein, putative [Treponema denticola ATCC 35405]
 gi|325474208|gb|EGC77396.1| basic membrane protein [Treponema denticola F0402]
          Length = 358

 Score = 39.3 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 37/295 (12%), Positives = 87/295 (29%), Gaps = 26/295 (8%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTIN---GEVITDGDISKRIALLKLQKIN---GELEK 74
           + I   +V  +   S     ++   +N    E IT G + K +   + Q  N    + +K
Sbjct: 5   IFIAVMLVGFLGLLSAQNDLQVIAQVNLSKKEPITLGQLKKLVKFAESQGGNIATNDDKK 64

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSA------------EDFSS 122
           + ++ L+   L  Q  EK  I   ++ V+  F                       ++  S
Sbjct: 65  LVLESLMRTKLLVQAAEKENIKISNSQVDNAFNDVLSQYVKYPITESEFAKLIKQKENIS 124

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
             +          + L        +++N    K+    +++                   
Sbjct: 125 LDEFMKKQTGCTVEELKKIIKDNLIIQNYIASKHQAEIVKMATPTDAQIRSYYEMKKGEL 184

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKA----QYLL 238
           V   +            K  ++ ++      K    +++ A+   +   G       Y+ 
Sbjct: 185 VRPDMVKMLFVAVKKEGKDKEEIDKINELHKKVKKNIKEIANIKKNAEAGNYVAQEGYIP 244

Query: 239 ESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNT 293
           ++    Q  N   ++         ++       I D+ D      +   L+A+  
Sbjct: 245 KTAEGAQLLNATPEALME----IFSKDVNYIFDIQDRVDSRQFFVITEKLNAKIL 295


>gi|299134975|ref|ZP_07028166.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Afipia sp. 1NLS2]
 gi|298589952|gb|EFI50156.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Afipia sp. 1NLS2]
          Length = 617

 Score = 39.3 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 27/254 (10%), Positives = 66/254 (25%), Gaps = 12/254 (4%)

Query: 60  IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
            +  + + I  +      +ELI   +   E  K+    ++ +      +      +  + 
Sbjct: 130 YSYTEQRYIAEQRRLTLRRELIGSIVAGVEPTKTQ--IEAISRFQDEQRTIDYAKIGPDQ 187

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
             +         N + +    Q   P+  K  +         E+        +   + Y 
Sbjct: 188 AGTIEAPSPDALNTYFEAHKAQFRAPEYRKVVY---LTLSPDELAKKVVVSDDDARKVYD 244

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI-GKAQYLL 238
            R   +  P    +    +  + +DA ++           E  A  +   S       + 
Sbjct: 245 SRRADYVKP--DRREVQQIAFQSEDAAKAARAKIAGGMSFEDLAKDMKLTSGDMNLGLVS 302

Query: 239 ESDLHPQF--QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK 296
           E  L      +       N  + P         + +        E      ++       
Sbjct: 303 EKSLGDPIIAKAAFALPLNEVSQPVKGALATVLLKVTKIEPGSTE--AFEKVAPAIKKEI 360

Query: 297 IEKHEAEYVKKLRS 310
            E+       K+R+
Sbjct: 361 AEQRVRTDFDKMRN 374



 Score = 38.9 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/158 (8%), Positives = 38/158 (24%), Gaps = 14/158 (8%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE-- 73
           +    +++ F +  I      +       T+    I              Q         
Sbjct: 3   VLFGILIVSFAVWGIADIFKGSTQ-TTLATVGNTDIPLEQFRSAYTDKLQQISRQIRRPL 61

Query: 74  -----------KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
                      +  +Q+ I ET   +E  + G+      +           G + +   +
Sbjct: 62  TPTQGRAFGIDRQLLQQTIAETALDEEGRRMGLRMSDAEIVRTISSDPTFAGPNGKFDPA 121

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
                    ++ +Q    +     + +         +E
Sbjct: 122 RFAMAMRDYSYTEQRYIAEQRRLTLRRELIGSIVAGVE 159


>gi|257899550|ref|ZP_05679203.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           Com15]
 gi|257837462|gb|EEV62536.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           Com15]
          Length = 340

 Score = 39.3 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 33/317 (10%), Positives = 79/317 (24%), Gaps = 39/317 (12%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +   +K  +          V  ++  S   +++   T+ G  IT  D      L      
Sbjct: 1   MQTLMKKKSIILAATSALAVLTLAACS-GDTNKDIATMKGGTITVSDFYDEAKL------ 53

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
                +  VQ +I+  +      K G       V+  + + A++ G + E        Q 
Sbjct: 54  -ESSNQSLVQRMIIYKV---FNNKYGDKVTDKQVDAEYDKQAKSLGDTFES-------QL 102

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
               + K             +          + ++    +                    
Sbjct: 103 ETAGYTKDSYKEYIRNNLAFEAGLKAHVDITDDDLKTAWESFHPE------------VEA 150

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
                +     K +K + +      K        +    D    K      +      + 
Sbjct: 151 QIIKLSSEDEAKDVKKSADDGDDFSKLAKDKSTDSETKEDGGKVKFDSTTTTIPAEVKEA 210

Query: 249 LLKKSQNNTTNPYVTQKG------VEYIAICDKRDLGGEIAL-KAYLSAQNTPTKI--EK 299
             K      ++                + +   ++ G ++   K  L    T TK+    
Sbjct: 211 AFKLKDGEVSDVITATNTTSYATEYYVVKMVKNQNKGNDMDKYKDQLKEIATETKLSDNT 270

Query: 300 HEAEYVKKLRSNAIIHY 316
              + + +   +A +  
Sbjct: 271 FTTKVIGEELKDANVKI 287


>gi|86153477|ref|ZP_01071681.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85843203|gb|EAQ60414.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 496

 Score = 39.3 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 23/258 (8%), Positives = 66/258 (25%), Gaps = 15/258 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL--------- 63
           + +  +    +    +   +Y      S    T+  E I   +   R   +         
Sbjct: 14  VTIWVSTIAFVGAGFLGWGAYDFNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQISN 73

Query: 64  ----KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                       ++ IA+  L+ + L     +  GI  + N +             + + 
Sbjct: 74  GALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANTREFQDPTGDF 133

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
             +   +    +N   +    Q     +       +  N+  +    K    +  +++ L
Sbjct: 134 NKTIYYELLNANNLTPKDYETQLANEVITDKL--NQIFNIPSKDEELKMLASSYFMQDAL 191

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
               +     N   N+  ++K   + +E               +     +   + +    
Sbjct: 192 SIAKIDYDKKNIKINEEDLKKLWNEHKEDYKTKKIYEISTYFLSVSNEKIDDKELEKFYN 251

Query: 240 SDLHPQFQNLLKKSQNNT 257
            D +            + 
Sbjct: 252 QDENKLKYKDFAGKVMDF 269


>gi|157414981|ref|YP_001482237.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157385945|gb|ABV52260.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747618|gb|ADN90888.1| Peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315931892|gb|EFV10847.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 496

 Score = 39.3 bits (89), Expect = 0.75,   Method: Composition-based stats.
 Identities = 23/258 (8%), Positives = 66/258 (25%), Gaps = 15/258 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL--------- 63
           + +  +    +    +   +Y      S    T+  E I   +   R   +         
Sbjct: 14  VTIWVSTIAFVGAGFLGWGAYDFNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQISN 73

Query: 64  ----KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                       ++ IA+  L+ + L     +  GI  + N +             + + 
Sbjct: 74  GALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANTREFQDPTGDF 133

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
             +   +    +N   +    Q     +       +  N+  +    K    +  +++ L
Sbjct: 134 NKTIYYELLNANNLTPKDYETQLANEVITDKL--NQIFNIPSKDEELKMLASSYFMQDAL 191

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
               +     N   N+  ++K   + +E               +     +   + +    
Sbjct: 192 SIAKIDYDKKNIKINEEDLKKLWNEHKEDYKTKKIYEISTYFLSVSNEKIDDKELEKFYN 251

Query: 240 SDLHPQFQNLLKKSQNNT 257
            D +            + 
Sbjct: 252 QDENKLKYKDFAGKVMDF 269


>gi|119487787|ref|ZP_01621296.1| hypothetical protein L8106_29935 [Lyngbya sp. PCC 8106]
 gi|119455620|gb|EAW36757.1| hypothetical protein L8106_29935 [Lyngbya sp. PCC 8106]
          Length = 247

 Score = 39.3 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 26/253 (10%), Positives = 64/253 (25%), Gaps = 26/253 (10%)

Query: 46  IN--GEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
           +N  G  +T+ +I   ++ LK Q    E  +  + +     + +   E+           
Sbjct: 2   VNKSGTSVTNDEI---VSFLKEQLQYKEFCQKILSQ---RAIHRAVQEREITVTSDEIQA 55

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
               Q        A D  ++L  Q I  + ++  +    +   + +  F  +      + 
Sbjct: 56  EADRQRLVRRLEKASDTLAWLTDQRISPDDWEAGIQQGILAKKLAETLFASEVEKYFAQN 115

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
             + +++    +     R         + +   F         E + R            
Sbjct: 116 RLDYEQVLLYQIIVPYERLARELFYQIEEEEISFYHAAHLYDIEKKRREL---------- 165

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEI 282
                   G    L    L       +   +      P+ T  G     + +        
Sbjct: 166 -------CGYEGQLNRRHLKADIAALVFGATPGEIIGPHQTDLGYHLFKVEEFIPAELTE 218

Query: 283 ALKAYLSAQNTPT 295
                +  +    
Sbjct: 219 EYSQKIIQKLFKE 231


>gi|188995374|ref|YP_001929626.1| putative peptidyl-prolyl cis-trans isomerase [Porphyromonas
           gingivalis ATCC 33277]
 gi|188595054|dbj|BAG34029.1| putative peptidyl-prolyl cis-trans isomerase [Porphyromonas
           gingivalis ATCC 33277]
          Length = 715

 Score = 39.3 bits (89), Expect = 0.78,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 53/188 (28%), Gaps = 14/188 (7%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
             K+       I ++       I           +  S  +   INGE I   D  +R+ 
Sbjct: 4   LEKIRGKAGLLIVVVGVALFAFIIGDFLRSGSTFFRQSQEVVLDINGEKIKIYDYQQRLK 63

Query: 62  LLKLQ----------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
            ++ +          +    L     Q+ + + +  Q+ +K G+T     +    +    
Sbjct: 64  AMEKRAEQSGTKITDEQRASLNNQLAQQYVQDYVLGQQADKLGLTVSPEELLALIIGDGV 123

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAI----QSIWPDVVKNDFMLKYGNLEMEIPANK 167
              + A+ F S     G        +L      Q       +  ++ +  +    +    
Sbjct: 124 QPSMFAQQFFSRFGINGSDRAAVNDFLNHISDKQIKSQPAEQQGYLYEIQSEWQSVEKQI 183

Query: 168 QKMKNITV 175
              +    
Sbjct: 184 ADTRMQEK 191


>gi|227552654|ref|ZP_03982703.1| peptidylprolyl isomerase [Enterococcus faecium TX1330]
 gi|293378656|ref|ZP_06624815.1| putative foldase protein PrsA [Enterococcus faecium PC4.1]
 gi|227178280|gb|EEI59252.1| peptidylprolyl isomerase [Enterococcus faecium TX1330]
 gi|292642696|gb|EFF60847.1| putative foldase protein PrsA [Enterococcus faecium PC4.1]
          Length = 336

 Score = 39.3 bits (89), Expect = 0.80,   Method: Composition-based stats.
 Identities = 30/309 (9%), Positives = 75/309 (24%), Gaps = 38/309 (12%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
            +  +     +  +        +++   T+ G  IT  D      L           +  
Sbjct: 4   KSIILAATSALAVLTLAACSGDTNKDIATMKGGTITVSDFYDEAKL-------ESSNQSL 56

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           VQ +I+  +      K G       V+  + + A++ G + E        Q     + K 
Sbjct: 57  VQRMIIYKV---FNNKYGDKVTDKQVDAEYDKQAKSLGDTFES-------QLETAGYTKD 106

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
                       +          + ++    +                         +  
Sbjct: 107 SYKEYIRNNLAFEAGLKAHVDITDDDLKTAWESFHPE------------VEAQIIKLSSE 154

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
              K +K + +      K        +    D    K      +      +   K     
Sbjct: 155 DEAKDVKKSADDGDDFSKLAEDKSTDSETKEDGGKVKFDSTTTTIPAEVKEAAFKLKDGE 214

Query: 257 TTNPYVTQKG------VEYIAICDKRDLGGEIAL-KAYLSAQNTPTKI--EKHEAEYVKK 307
            ++                + +   ++ G ++   K  L    T TK+       + + +
Sbjct: 215 VSDVITATNTTSYATEYYVVKMVKNQNKGNDMDKYKDQLKEIATETKLSDNAFTTKVIGE 274

Query: 308 LRSNAIIHY 316
              +A +  
Sbjct: 275 ELKDANVKI 283


>gi|307266612|ref|ZP_07548142.1| conserved hypothetical protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918343|gb|EFN48587.1| conserved hypothetical protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 240

 Score = 39.3 bits (89), Expect = 0.82,   Method: Composition-based stats.
 Identities = 17/155 (10%), Positives = 45/155 (29%), Gaps = 9/155 (5%)

Query: 38  MSSRIRTTINGEVITDGDISKRIAL-LKLQKINGELEKIAVQELIVETLKKQEIEKSGIT 96
               I   +NG  I   +   R  L L  +    ++    + +L+ E +K+    K  + 
Sbjct: 61  NEGDIIAEVNGIPIYKNEFELRKGLTLASEGQVNDINNFVLSKLVREKVKEYLAMKYNLK 120

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL--------AIQSIWPDVV 148
                +N +  +  +    S E      +        + +Y             ++  + 
Sbjct: 121 VSEGEINSYLEKEKQQFKESPEVDKKLKELISASGMTYDEYWNDYEKYNVKRMLLFDKLY 180

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                    + ++E             ++Y+   +
Sbjct: 181 NTIINEGIKSGKLEKTDKMTVDTQNEYKKYVDSII 215


>gi|297585156|ref|YP_003700936.1| SurA domain-containing protein [Bacillus selenitireducens MLS10]
 gi|297143613|gb|ADI00371.1| SurA domain protein [Bacillus selenitireducens MLS10]
          Length = 272

 Score = 39.3 bits (89), Expect = 0.82,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 51/148 (34%), Gaps = 13/148 (8%)

Query: 41  RIRTTINGEVITDGDISKRIALLKLQK-----------INGELEKIAVQELIVETLKKQE 89
            +   +NGE I+  +          Q               ++  +    ++  TL  QE
Sbjct: 81  DVVAEVNGEEISQEEFLATYEPQFQQMAMQSQMTGEEVDEAQIRDMVADSMVNNTLLIQE 140

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLS-AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
            +  GI      +     + A+   +  ++ F   L++QG  ++     + +Q     ++
Sbjct: 141 ADSQGIEATDEDIEQLLTELAQQNQMESSDQFLQALEEQGTPEDVVMDQVEMQVKVDQLI 200

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVR 176
            N+   +    + E+     +++    +
Sbjct: 201 ANE-AGEIDVSDAEVEEMYAQLEAQQEQ 227


>gi|121613493|ref|YP_001000390.1| peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|167005333|ref|ZP_02271091.1| hypothetical protein Cjejjejuni_03670 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|87249349|gb|EAQ72309.1| peptidyl-prolyl cis-trans isomerase D, homolog [Campylobacter
           jejuni subsp. jejuni 81-176]
          Length = 496

 Score = 39.3 bits (89), Expect = 0.82,   Method: Composition-based stats.
 Identities = 23/258 (8%), Positives = 66/258 (25%), Gaps = 15/258 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL--------- 63
           + +  +    +    +   +Y      S    T+  E I   +   R   +         
Sbjct: 14  VTIWVSTIAFVGAGFLGWGAYDFNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQISN 73

Query: 64  ----KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                       ++ IA+  L+ + L     +  GI  + N +             + + 
Sbjct: 74  GALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANTREFQDPTGDF 133

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
             +   +    +N   +    Q     +       +  N+  +    K    +  +++ L
Sbjct: 134 NKTIYYELLNANNLTPKDYETQLANEVITDKL--NQIFNIPSKDEELKMLASSYFMQDAL 191

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
               +     N   N+  ++K   + +E               +     +   + +    
Sbjct: 192 SIAKIDYDKKNIKINEEDLKKLWDEHKEDYKTKKIYEISTYFLSVSNEKIDDKELEKFYN 251

Query: 240 SDLHPQFQNLLKKSQNNT 257
            D +            + 
Sbjct: 252 QDENKLKYKDFAGKVMDF 269


>gi|153951630|ref|YP_001398361.1| peptidyl-prolyl cis-trans isomerase D-like protein [Campylobacter
           jejuni subsp. doylei 269.97]
 gi|152939076|gb|ABS43817.1| peptidyl-prolyl cis-trans isomerase D-like protein [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 496

 Score = 39.3 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 67/227 (29%), Gaps = 19/227 (8%)

Query: 3   SKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIAL 62
            K +  ++ ++  +   FV   F       +     SS    T+  E I   +   R   
Sbjct: 8   HKKYLVVTIWVSTI--AFVGAGFLGWGAYDFNLNRSSS--VATVGNEKIGFSEFDTRYRQ 63

Query: 63  L-------------KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
           +                     ++ IA+  L+ + L     +  GI  + N +       
Sbjct: 64  ILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANT 123

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
                 + +   +   +    +N   +    Q      V  D + +  N+  +    K  
Sbjct: 124 REFQDPTGDFNKTIYYELLNANNLTPKDYETQLANE--VTTDKLNQIFNIPSKDEELKML 181

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
             +  +++ L    +     N   N+  ++K   + +E+        
Sbjct: 182 ASSYFMQDVLSIAKIDYDKKNIKINEEDLKKLWNEHKENYKTKKIYE 228


>gi|301625964|ref|XP_002942172.1| PREDICTED: hypothetical protein LOC100494783 [Xenopus (Silurana)
           tropicalis]
          Length = 1193

 Score = 39.3 bits (89), Expect = 0.84,   Method: Composition-based stats.
 Identities = 22/247 (8%), Positives = 57/247 (23%), Gaps = 16/247 (6%)

Query: 65  LQKINGELEKI--AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
                  L      +++ +    K     K+   F+            +      E  S 
Sbjct: 10  KLNQLQALRDQWQLLKQTVTNHNKAVGGAKALQEFNKKADELEMWMREK-----EEKPSL 64

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
            L      D        +      +   +       L  ++    +     T        
Sbjct: 65  SLLLDQNNDKIQLTRRILDLKQEQLHYRNLQENINCLAQKLEKQGRMESKATSNRRKQLN 124

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
            ++      L       +   +A     +       +E    K    + G ++ + E +L
Sbjct: 125 KMWLRLQETLLEHQQTLQLALEAATLWQQADGILRAME--GQKSGVGNGGDSKAIREREL 182

Query: 243 HPQFQNLLKKSQNNTTNPYVTQKGVEYI------AICDKRDLGGEIALKAYLSAQNTPTK 296
                 ++   + N         G + +       + D RD          +  +    +
Sbjct: 183 RDIASQIMLLLETNLGGWLEGGFGFQMVRESLRRRVSDLRDTLVLSE-FMEIVQKEENRR 241

Query: 297 IEKHEAE 303
            ++    
Sbjct: 242 KKQKLEA 248


>gi|237742313|ref|ZP_04572794.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 4_1_13]
 gi|229429961|gb|EEO40173.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 4_1_13]
          Length = 356

 Score = 39.3 bits (89), Expect = 0.84,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 49/171 (28%), Gaps = 8/171 (4%)

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           +      +    + ++     + K+           L  I     +    + K   +   
Sbjct: 91  LAEKVRDEVKPTDEDLLKFFNENKSKYSIPATADAKLVFISVKSAKEDDNLAKEKAEKLL 150

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN--TTNPYVTQK 265
           S L       K +  ++    +          + +  +F+  LK   +N        T+ 
Sbjct: 151 SELTPENFTEKGKSLSNNQDIIY-QDLGTFGTTAMVKEFEEALKDVPSNTVVNKVIKTKF 209

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS-NAIIH 315
           G     +  K++         ++     P   EK   E ++KL    A I 
Sbjct: 210 GYHVAYV--KKNDNNRQWAVEHILIVPYP--SEKTMTEKLEKLNKVKADIE 256


>gi|304315629|ref|YP_003850774.1| hypothetical protein Tthe_0101 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777131|gb|ADL67690.1| conserved hypothetical protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 241

 Score = 39.3 bits (89), Expect = 0.85,   Method: Composition-based stats.
 Identities = 14/155 (9%), Positives = 42/155 (27%), Gaps = 9/155 (5%)

Query: 41  RIRTTINGEVITDGDISKRIAL-LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS 99
            I   +N   I   +   R  L L        ++   + +L+ E +++       +    
Sbjct: 65  DIIAKVNNIPIYKSEFELRKGLTLASDAEISNIDNYILNKLVREKVEEHLASSYNLKVSQ 124

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL--------AIQSIWPDVVKND 151
           + +N +  +  +      E      +         ++Y             ++  +    
Sbjct: 125 DEINLYIEKEKKEFADYPEANQMLQEMISASGMTSEEYWNTYEKYNVKRLLLFDKLYNTI 184

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
                 +  +E  +N         + Y+   +   
Sbjct: 185 IENGIRSGNLEKTSNTTFSTQSEYKNYVDNIIEQY 219


>gi|34540273|ref|NP_904752.1| hypothetical protein PG0452 [Porphyromonas gingivalis W83]
 gi|34396585|gb|AAQ65651.1| conserved hypothetical protein [Porphyromonas gingivalis W83]
          Length = 715

 Score = 39.3 bits (89), Expect = 0.85,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 42/136 (30%), Gaps = 10/136 (7%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
             K+       I ++       I           +  S  +   INGE I   D  +R+ 
Sbjct: 4   LEKIRGKAGLLIVVVGVALFAFIIGDFLRSGSTFFRQSQEVVLDINGEKIKIYDYQQRLK 63

Query: 62  LLKLQ----------KINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
            ++ +          +    L     Q+ + + +  Q+ +K G+T     +    +    
Sbjct: 64  AMEKRAEQSGTKITDEQRASLNNQLAQQYVQDYVLGQQADKLGLTVSPEELLALIIGDGV 123

Query: 112 NTGLSAEDFSSFLDKQ 127
              + A+ F S     
Sbjct: 124 QPSMFAQQFFSRFGIN 139


>gi|86151641|ref|ZP_01069855.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85841270|gb|EAQ58518.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           260.94]
          Length = 496

 Score = 39.3 bits (89), Expect = 0.85,   Method: Composition-based stats.
 Identities = 23/258 (8%), Positives = 66/258 (25%), Gaps = 15/258 (5%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL--------- 63
           + +  +    +    +   +Y      S    T+  E I   +   R   +         
Sbjct: 14  VTIWVSTIAFVGAGFLGWGAYDFNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQISN 73

Query: 64  ----KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                       ++ IA+  L+ + L     +  GI  + N +             + + 
Sbjct: 74  GALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANTREFQDPTGDF 133

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
             +   +    +N   +    Q     +       +  N+  +    K    +  +++ L
Sbjct: 134 NKTIYYELLNANNLTPKDYETQLANEVITDKL--NQIFNIPSKDEELKMLASSYFMQDAL 191

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLE 239
               +     N   N+  ++K   + +E               +     +   + +    
Sbjct: 192 SIAKIDYDKKNIKINEEDLKKLWNEHKEDYKTKKIYEISTYFLSVSNEKIDDKELEKFYN 251

Query: 240 SDLHPQFQNLLKKSQNNT 257
            D +            + 
Sbjct: 252 QDENKLKYKDFAGKVMDF 269


>gi|296386502|ref|ZP_06876001.1| hypothetical protein PaerPAb_00150 [Pseudomonas aeruginosa PAb1]
          Length = 375

 Score = 39.3 bits (89), Expect = 0.87,   Method: Composition-based stats.
 Identities = 14/171 (8%), Positives = 48/171 (28%), Gaps = 14/171 (8%)

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
            +   K  + + E    +   +   V +     +  +   +  +    ++  +   E  R
Sbjct: 212 RELAGKVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRGGLAFDEAVR 271

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLE--SDLHPQFQNLLKKSQNNTTNPYVTQKGV 267
                        A        G    +      L    +  L +  +  + P       
Sbjct: 272 R---------YSLADDRDRDPPGDLGLIRPQDGRLDLLRKTALIQKADTVSQPMRIDGAF 322

Query: 268 EYIAI---CDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           E + +    D++    + +++  ++      ++       ++ L + A + 
Sbjct: 323 EIVRVRSREDRQLPLDDRSVRFEVNQAVAREQLAAQFETRLRNLLAGARVE 373


>gi|311087368|gb|ADP67448.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str.
           JF99 (Acyrthosiphon pisum)]
 gi|311087867|gb|ADP67946.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str.
           JF98 (Acyrthosiphon pisum)]
          Length = 623

 Score = 39.3 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 27/260 (10%), Positives = 69/260 (26%), Gaps = 9/260 (3%)

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            + +  L             +++ I        I KS         N   +   +     
Sbjct: 137 ERYLNYLTSINSTNHEYINIIKKKINTENLIHTISKSNFILKKEEKNIIKLLSQKRIIKK 196

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
           A         +    N   Q    ++     +   F  K   +E++    K   +N  + 
Sbjct: 197 AIVKIDPSIYKKNITNQEAQIYFKKNQDNFYIPEKF--KINFVELKTDNFKIHCENKEIY 254

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-----DVSI 231
           ++ IR +       K +      K  + A     RL        K A +           
Sbjct: 255 DWYIRNITQYSTKEKRRYSIIQVKNKQQAISILSRLHNTPEDFSKIAQEQSTDPISSKKD 314

Query: 232 GKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ 291
           G   ++    +  + ++     +N  ++          + + + +    +      +   
Sbjct: 315 GDIGWISIDLIPDEIKHANLNKKNQISDVIPFHNEFLIVKLNETQIGTQKKIY--EVFDS 372

Query: 292 NTPTKIEKHEAEYVKKLRSN 311
                 +K   +   +L++ 
Sbjct: 373 IKKQIKQKKSLDLYNELKNK 392


>gi|15617076|ref|NP_240289.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11386976|sp|P57550|PPID_BUCAI RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase
           D; AltName: Full=Rotamase D
 gi|25403639|pir||G84985 peptidylprolyl isomerase (EC 5.2.1.8) [imported] - Buchnera sp.
           (strain APS)
 gi|10039141|dbj|BAB13175.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 623

 Score = 39.3 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 27/260 (10%), Positives = 69/260 (26%), Gaps = 9/260 (3%)

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            + +  L             +++ I        I KS         N   +   +     
Sbjct: 137 ERYLNYLTSINSTNHEYINIIKKKINTENLIHTISKSNFILKKEEKNIIKLLSQKRIIKK 196

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
           A         +    N   Q    ++     +   F  K   +E++    K   +N  + 
Sbjct: 197 AIVKIDPSIYKKNITNQEAQIYFKKNQDNFYIPEKF--KINFVELKTDNFKIHCENKEIY 254

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-----DVSI 231
           ++ IR +       K +      K  + A     RL        K A +           
Sbjct: 255 DWYIRNITQYSTKEKRRYSIIQVKNKQQAISILSRLHNTPEDFSKIAQEQSTDPISSKKD 314

Query: 232 GKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ 291
           G   ++    +  + ++     +N  ++          + + + +    +      +   
Sbjct: 315 GDIGWISIDLIPDEIKHANLNKKNQISDVIPFHNEFLIVKLNETQIGTQKKIY--EVFDS 372

Query: 292 NTPTKIEKHEAEYVKKLRSN 311
                 +K   +   +L++ 
Sbjct: 373 IKKQIKQKKSLDLYNELKNK 392


>gi|237740229|ref|ZP_04570710.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 2_1_31]
 gi|229422246|gb|EEO37293.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 2_1_31]
          Length = 356

 Score = 38.9 bits (88), Expect = 0.89,   Method: Composition-based stats.
 Identities = 19/206 (9%), Positives = 54/206 (26%), Gaps = 5/206 (2%)

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
                  +    +         + A+N        +    ++G+  N     ++    + 
Sbjct: 29  LDLAKIMATFMINQKATKEQAEELAKNMIAKQIKVAKMAKEKGVKVNEELDLMSQLQDYA 88

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDA 205
             +      +    + E+ +     K+           L  I     +    V K   + 
Sbjct: 89  IGLSEKVREEIKPTDAELESFFNTNKSRYNIPETADAKLIFITVKSTKEDDAVAKAEAEK 148

Query: 206 EESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN--TTNPYVT 263
             + L       K +   +    +            +  +F+  LK   +N        T
Sbjct: 149 LLAELTPENFSEKGKTLGNNQDIIY-QDLGTFGTKAMVKEFEEALKDVPSNTVINKVIKT 207

Query: 264 QKGVEYIAICDKRDLGGEIALKAYLS 289
           + G   + +  K++   +     ++ 
Sbjct: 208 KFGYHVVYV--KKNDNNQQWSAEHIL 231


>gi|254458909|ref|ZP_05072332.1| conserved hypothetical protein [Campylobacterales bacterium GD 1]
 gi|207084180|gb|EDZ61469.1| conserved hypothetical protein [Campylobacterales bacterium GD 1]
          Length = 488

 Score = 38.9 bits (88), Expect = 0.89,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 69/234 (29%), Gaps = 21/234 (8%)

Query: 5   VFTSLSDFIK--LLTTYFVLIIFCIVPIVSYKSWAMSSRI--RTTINGEVITDGDISKRI 60
           + T +    K  ++T +   I F     V +  ++   +      +    +T G++ K  
Sbjct: 1   MITWMQRHKKYLIITIWISTIAFVGAGFVGWGQYSYGDKAGAVAKVGNVEVTMGELQKTY 60

Query: 61  ALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF- 106
           + L  Q                  L+  A+++L  + L         +  +   +     
Sbjct: 61  SNLYAQYNKMFQGNFDEEKAKSFGLQSQALKQLTDQALIINLALSYDLEINDAELLNELK 120

Query: 107 --VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
                 ++   + E +   L +  +    ++  +  Q +    +     +     E++I 
Sbjct: 121 TQEYFFKDGVFNKEIYKQVLSQNNMSIKEYEVSVKKQLLIQKTL-KLLPVDVSKNELDII 179

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
           ++   + +    + L    +     +      +  ++     E    +      
Sbjct: 180 SSVLNIADKINYKILSDEKINIDTSDAALKPFWEARQQNFMSEVTYEVKFIKQS 233


>gi|172044707|gb|ACB69917.1| perchlorate reductase A [Dechlorosoma sp. KJ]
          Length = 927

 Score = 38.9 bits (88), Expect = 0.89,   Method: Composition-based stats.
 Identities = 23/279 (8%), Positives = 61/279 (21%), Gaps = 22/279 (7%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIR-----TTINGEVITDGDISKRIALL 63
           ++ +I      FV  +  +                       +N E+I+  DI      L
Sbjct: 482 MNHYIGQWKPAFVAGLVALAFPEGVNKQRFCQTTIWTYIHAEVNDEIIS-SDIDTE-KYL 539

Query: 64  KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
           +     G++  +  Q       K   + +      +    Y          L  +     
Sbjct: 540 RDSITTGQMPNMPEQ---GRDPKVFFVYRGNWLNQAKGQKYVLENLWPKLELIVDINIRM 596

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK-----QKMKNITVREY 178
                  D         + +  +V            E  I          ++     +  
Sbjct: 597 DSTALYSDVVLPSAHWYEKLDLNVTSE--HSYINMTEPAIKPMWESKTDWQIFLALAKRV 654

Query: 179 LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238
            +            +   +V+       +  +      ++        +          +
Sbjct: 655 EMAAKRKKYEKFNDEKFKWVRDLSNLWNQMTMDGKLAEDEAAAQYILDNAPQSKGITIQM 714

Query: 239 ESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD 277
             +   +F++              T      +   DK+ 
Sbjct: 715 LREKPQRFKSNWTSPLKEGVP--YTPFQYFVV---DKKP 748


>gi|269954958|ref|YP_003324747.1| von Willebrand factor type A [Xylanimonas cellulosilytica DSM
          15894]
 gi|269303639|gb|ACZ29189.1| von Willebrand factor type A [Xylanimonas cellulosilytica DSM
          15894]
          Length = 2262

 Score = 38.9 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 6/66 (9%)

Query: 1  MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSS------RIRTTINGEVITDG 54
          M  +   S+     L       +   IV   +  S A +       +I  T++G  +T  
Sbjct: 1  MAPRTKFSIRRTPVLRRIAAATVALAIVSGGAIASQAAAEGEGADGQIVATVDGVPVTQA 60

Query: 55 DISKRI 60
          ++ + I
Sbjct: 61 ELEELI 66


>gi|207091647|ref|ZP_03239434.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 487

 Score = 38.9 bits (88), Expect = 0.90,   Method: Composition-based stats.
 Identities = 36/317 (11%), Positives = 90/317 (28%), Gaps = 21/317 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +    +  I   +      S+++ S     +    I+  ++++  
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEY 60

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             LK        +    +EL  + +K   +EKS    DS          A + GL A   
Sbjct: 61  RRLKDAYAESIPD---FKELTEDQIKAMHLEKSA--LDSLINQALLRNLALDLGLGATKQ 115

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
               + +             +     + ++ +  K+    +E     QK+  +  +    
Sbjct: 116 EVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVEKLLILQKISALFPKTTTP 175

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
                     KLQ++  +     +  +       + K     +K   K          + 
Sbjct: 176 LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFD 235

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
              +     +      +N  +             +  +  L    +++  +    +  K 
Sbjct: 236 ASLEKPDLKELEEYYHKNKVS------------YLDKEGKLQDFKSVQEQVKHDLSMQKA 283

Query: 298 EK-HEAEYVKKLRSNAI 313
            +     YV   ++NA 
Sbjct: 284 NEKALRSYVALKKANAK 300


>gi|330446025|ref|ZP_08309677.1| putative uncharacterized protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490216|dbj|GAA04174.1| putative uncharacterized protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 269

 Score = 38.9 bits (88), Expect = 0.91,   Method: Composition-based stats.
 Identities = 19/170 (11%), Positives = 58/170 (34%), Gaps = 14/170 (8%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M  K    L   IK   ++F++    +    S    +       ++N   +T   ++++ 
Sbjct: 1   MLKKGNYWLKIVIKDPFSHFLIAGTVLFIFYSLYHSS------ASVNTISVTPSQVAQQK 54

Query: 61  ALLKL--------QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
               L        Q++N ++  + +++++ +   K  +EK     +   +  +    ++ 
Sbjct: 55  KDDTLYFGSPPSKQELNKDINHVVLKQMLSQQALKLGLEKGDPNLNEMLMQRYLSYVSQL 114

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
             L+A + S            +K        +  +   +       ++ +
Sbjct: 115 AKLNATNTSLLHQYYLTHQTRYKHPDMYSLCYHFLTPQEVQHPISTMDSQ 164


>gi|322491746|emb|CBZ27019.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 438

 Score = 38.9 bits (88), Expect = 0.92,   Method: Composition-based stats.
 Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 232 GKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICD 274
           G    + +     +  +   +  +   + P  TQ GV  +  CD
Sbjct: 395 GDLGVVEKGTFADEIDEAAFRLRRGEVSAPVETQLGVHLLYRCD 438


>gi|332185866|ref|ZP_08387613.1| hypothetical protein SUS17_824 [Sphingomonas sp. S17]
 gi|332014224|gb|EGI56282.1| hypothetical protein SUS17_824 [Sphingomonas sp. S17]
          Length = 650

 Score = 38.9 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 13/171 (7%), Positives = 47/171 (27%), Gaps = 14/171 (8%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCI--VPIVSYKSWAMSSRIRTTINGEVITDGDI----SK 58
           + +     +  +    + I F    V  ++  +  ++      +    +T  D+      
Sbjct: 9   INSKAGVIVTFIVLGVIAIAFAAGDVSNIAGMAGGLTGSTVAKVGSAKVTVDDLRTAAQN 68

Query: 59  RIALLKLQKINGELEKI--------AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
            +A  + ++   ++ +          +Q  +     +Q  +  G+      V+       
Sbjct: 69  EVAAYRQEQPTLDMAQFIAAGGFEGVLQREVTGLSLEQFGKDQGMVVSRRLVDGQIASIP 128

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
              G + +   +   +           +          +   +   G  +M
Sbjct: 129 AFRGPNGQFDPALYQQLLAQRKMTDAQVRTDLQRTLFAQQLTVPTIGATQM 179


>gi|254281981|ref|ZP_04956949.1| conserved hypothetical protein [gamma proteobacterium NOR51-B]
 gi|219678184|gb|EED34533.1| conserved hypothetical protein [gamma proteobacterium NOR51-B]
          Length = 307

 Score = 38.9 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 30/310 (9%), Positives = 79/310 (25%), Gaps = 48/310 (15%)

Query: 19  YFVLIIFCIVPIVSYKSWAMSS---RIRTTINGEVITDGDISKRIALLKLQKINGEL--- 72
           + ++  F  V  ++      S    RI      E      +  R           +L   
Sbjct: 15  FLIMGAFLFVFYLAITDDEASEDGHRIVV---DEPTLLRFLQYRSKSFDPNMAAQKLSAL 71

Query: 73  ----EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
                +  + +L+ E    +E  + G+  D   +    VQ          +         
Sbjct: 72  NMSKREQLLMQLVREEALYREAGRLGLHRDDYVIKQRMVQKVEYLARGFGE--------- 122

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                     A Q I  + V   ++      E    A    +    + +   + +     
Sbjct: 123 ----------AEQLIDRNAVATYYVENISRYEEPSIATFAHVFVRGLDDNARQRIKGLQQ 172

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
               ++  F           R           + +  + D   G+       ++ P  + 
Sbjct: 173 ALSREDIAFSSA------MGRGDRFVYHANYVERSRDMIDSHFGERFGAKLFEMSPDQKR 226

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHEAEYVK 306
                      P  +  G   + +  +         ++   ++       +++   + + 
Sbjct: 227 WQ--------GPVASDHGYHLVMLFKRDPASVPSLDSIYPRVAEDARRVALDQQTEQALT 278

Query: 307 KLRSNAIIHY 316
            + SN  + +
Sbjct: 279 DIVSNYEVTF 288


>gi|52078715|ref|YP_077506.1| putative lytic transglycosylase YomI [Bacillus licheniformis ATCC
           14580]
 gi|52784085|ref|YP_089914.1| hypothetical protein BLi00261 [Bacillus licheniformis ATCC 14580]
 gi|52001926|gb|AAU21868.1| putative lytic transglycosylase YomI [Bacillus licheniformis ATCC
           14580]
 gi|52346587|gb|AAU39221.1| hypothetical protein BLi00261 [Bacillus licheniformis ATCC 14580]
          Length = 255

 Score = 38.9 bits (88), Expect = 0.93,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 61/188 (32%), Gaps = 13/188 (6%)

Query: 41  RIRTTINGEVITDGDISKRIALLKLQKIN-----------GELEKIAVQELIVETLKKQE 89
           +    +N E IT  D +  ++  ++Q               +++K A+  LI + L  QE
Sbjct: 65  KTVAVVNDEKITGKDYNSVLSTAQMQYQQTGQDPTSKDAAQQIKKQAIDSLIGQALITQE 124

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
            +K G       +     +  +      +     + K G+  N  K  +A        + 
Sbjct: 125 ADKKGYKASEKEIEKQLDESKKQYKNEQDFEE-AVKKAGLNMNTLKSDIADSIKTEKYID 183

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
            +        + EI     +            T  F     ++Q+    QKR +   +  
Sbjct: 184 KELPTD-QVTDKEIKDYYDQFAAQQKDSGQKNTPAFDDVKQQIQDMLKQQKRQEKLGQQV 242

Query: 210 LRLPKDCN 217
            +L K  +
Sbjct: 243 EKLKKSAD 250


>gi|312864592|ref|ZP_07724823.1| putative foldase protein PrsA [Streptococcus downei F0415]
 gi|311099719|gb|EFQ57932.1| putative foldase protein PrsA [Streptococcus downei F0415]
          Length = 357

 Score = 38.9 bits (88), Expect = 0.94,   Method: Composition-based stats.
 Identities = 38/310 (12%), Positives = 78/310 (25%), Gaps = 27/310 (8%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKIN 69
             F  LL     + I  +   +   S      +  ++ G+ IT  D+  R       +  
Sbjct: 44  KIFRSLLVFVLAMAIGGVGTYLYMNSRPSEKTVLASMKGKEITVADLYNR-------QKG 96

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
            +  K A+ E I+  + + +  K     + N       Q A +    +     +   Q  
Sbjct: 97  NQATKEALLETILSDILEDKYGKKVSQDEVNKQYQESAQKAGSN--FSSMLDQYGYTQDS 154

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
             N  +  L          K D   K      +       +  +   +      L     
Sbjct: 155 YKNLIRLQLLQNYALKTAAKKDLTEKKLKSLYKDYNPDITISFVKTDDESKANSLHDQAT 214

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
               +   + K     E          +  +  +             L   D+      L
Sbjct: 215 ADGADFSQIVKDNNGQENVSFDSGDKYDSNKSSS-------------LPPEDVQKAAFKL 261

Query: 250 LKKSQNNTTNPYVTQK--GVEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEKHE--AEY 304
            K   ++T     T        + +  K +   +    K  L+      K        + 
Sbjct: 262 DKDGVSDTIKVQETDNSTSYYVVKVTAKNEKNPDWKNYKKRLTDIYVNQKNSNSSFKTQV 321

Query: 305 VKKLRSNAII 314
           +  L     +
Sbjct: 322 ISDLLKEYNV 331


>gi|197124443|ref|YP_002136394.1| DSBA oxidoreductase [Anaeromyxobacter sp. K]
 gi|196174292|gb|ACG75265.1| DSBA oxidoreductase [Anaeromyxobacter sp. K]
          Length = 348

 Score = 38.9 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQEIEKSGIT 96
              + G+ IT G++ + +     Q          +L++  ++ +I   + + + +  GIT
Sbjct: 35  VAKVGGQAITTGELDELVKSDLKQLEQQYEEQKYQLKRQGLESMIRRRVFEAKAKAEGIT 94

Query: 97  FDSNTVNYFF 106
            D        
Sbjct: 95  PDELVNRDVV 104


>gi|312887559|ref|ZP_07747153.1| hypothetical protein MucpaDRAFT_3495 [Mucilaginibacter paludis DSM
           18603]
 gi|311299929|gb|EFQ77004.1| hypothetical protein MucpaDRAFT_3495 [Mucilaginibacter paludis DSM
           18603]
          Length = 542

 Score = 38.9 bits (88), Expect = 0.97,   Method: Composition-based stats.
 Identities = 19/246 (7%), Positives = 56/246 (22%), Gaps = 14/246 (5%)

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           K     +               +  +       ++          +      +       
Sbjct: 289 KRIKYSVSDFKEFVNNEPMFMGSLSAPEDVKKMLRTFITEQYLFAEALQMNIQANEEYRQ 348

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
           F Q    +       +N    K      E+     K  N           ++   D +  
Sbjct: 349 FTQGYREKIFVEYYKRNHIYPKISIQPKEVEDYYSKHNNNFRVFESATVSVYKFRDIREA 408

Query: 194 NQG--FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK 251
                 +  + +D    +  +  +          I D S          +     + +L 
Sbjct: 409 YHQRMVLSAKARDMVAPKKNIGVNSLLATDIEVNIKDQS----------NDPKLIKAILS 458

Query: 252 KSQNNTTNPYVTQKGVEYIAICDKRD--LGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR 309
                 + P   +     I++  ++          K  ++      K ++  A  ++ + 
Sbjct: 459 LPPGQISAPIELKGEYWLISVSSRKGLITLPLSYAKEEITRVLQSQKEKQITAHLLEGMT 518

Query: 310 SNAIIH 315
           +   + 
Sbjct: 519 TKYPVE 524


>gi|291535316|emb|CBL08428.1| PPIC-type PPIASE domain [Roseburia intestinalis M50/1]
 gi|291538114|emb|CBL11225.1| PPIC-type PPIASE domain [Roseburia intestinalis XB6B4]
          Length = 329

 Score = 38.9 bits (88), Expect = 0.97,   Method: Composition-based stats.
 Identities = 16/164 (9%), Positives = 46/164 (28%), Gaps = 3/164 (1%)

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           +  +        E +I    Q           +   +     +       + +       
Sbjct: 130 LSKEENTYLEVTESDISEYYQHYALAQKLYNSLTNSVNEEVSDDEARVIEIMQIFVADST 189

Query: 208 SRLRLPKDCNKLEKFASKIHDVS--IGKAQYLLESDLHPQFQNLLKK-SQNNTTNPYVTQ 264
               +     + + FAS  ++ +        +   +L  + + +        T++     
Sbjct: 190 KASDVAAKLERGDDFASVANNYNELSSIQTTVARDELPKEVEEVAFNLDNGQTSSMIQAG 249

Query: 265 KGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
           KG  +I   +K +     A K+ +  +      +    ++V  L
Sbjct: 250 KGFYFIKCLNKYNEELTEANKSNIVEKREKEAFDDVYNQFVAGL 293


>gi|146086535|ref|XP_001465572.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134069671|emb|CAM67995.1| putative peptidyl-prolyl cis-trans isomerase [Leishmania infantum
           JPCM5]
 gi|322499014|emb|CBZ34086.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 160

 Score = 38.9 bits (88), Expect = 0.97,   Method: Composition-based stats.
 Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 232 GKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICD 274
           G    + +     +  +   +  +   + P  TQ GV  +  CD
Sbjct: 117 GDLGVVEKGTFADEIDKAAFRLRRGEVSAPVETQLGVHLLYRCD 160


>gi|186683673|ref|YP_001866869.1| hypothetical protein Npun_F3522 [Nostoc punctiforme PCC 73102]
 gi|186466125|gb|ACC81926.1| conserved hypothetical protein [Nostoc punctiforme PCC 73102]
          Length = 260

 Score = 38.9 bits (88), Expect = 0.97,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 64/239 (26%), Gaps = 19/239 (7%)

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            ++ +    + +QE +K+GI      +            L   + +       +   H  
Sbjct: 25  ILESIATRKIIEQEAKKAGIQIGLEELQRAADSLRLANQLLKAEDTWA----WLEKYHLS 80

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
                     +++           + E      ++  I    Y +             ++
Sbjct: 81  LDDFEAIAENNLLSAKLANHLFADKAEQFFYAHQLDYIAAVTYEVVL----------DDE 130

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQ 254
               +     +E  +   +   +  +  +     + G     L +D        +   + 
Sbjct: 131 DLALELFYALQEGEISFQQIARQYIQ--NTEIRRAGGYQGIRLRTDFRPEIAAAIFAANP 188

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT--KIEKHEAEYVKKLRSN 311
                P  T KGV  IA+ +      +   +  +         K +    E V KL  +
Sbjct: 189 PQILKPITTPKGVHIIAVEEIIKPQLDEQRRLKIIGDLFTNWLKSQTAAMEIVTKLTKD 247


>gi|298374311|ref|ZP_06984269.1| sensor histidine kinase/response regulator [Bacteroides sp. 3_1_19]
 gi|298268679|gb|EFI10334.1| sensor histidine kinase/response regulator [Bacteroides sp. 3_1_19]
          Length = 905

 Score = 38.9 bits (88), Expect = 0.98,   Method: Composition-based stats.
 Identities = 17/240 (7%), Positives = 58/240 (24%), Gaps = 17/240 (7%)

Query: 12  FIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIR-------------TTINGEVITDGDISK 58
           F+ +   + ++ +  IV      S      +                IN   I   +   
Sbjct: 16  FLYMKHPFLLVWLTLIVLCGCTSSGKQKRHVIGLSQCMLDDAWREAMINDMRIEASNYDD 75

Query: 59  RIALLKLQKINGELEKIAVQELIVET----LKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
              ++K  + N E +   +++LI +     +      +                   +  
Sbjct: 76  MEIIIKDAQNNNETQIQQIRDLIRQKVDVLIISPYQSEPITAVAEEAYRAGIPTIITDRK 135

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
           ++ + ++SF+              A   + P+ +  +          +            
Sbjct: 136 VNTDQYTSFVGANNYEIGLAAGNYAANYLPPNAIILEIWGLTQTSPAQERHKGFVDALRE 195

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKA 234
             +   R +      +  + +    +  +  +              ++      +     
Sbjct: 196 REDLSFRKIEGQWLVDTARMELRKLEHPEQIDFVYAHNDMMAIAAREYFMAWDSIRGRDL 255


>gi|226311741|ref|YP_002771635.1| hypothetical protein BBR47_21540 [Brevibacillus brevis NBRC 100599]
 gi|226094689|dbj|BAH43131.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 246

 Score = 38.9 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 63/213 (29%), Gaps = 15/213 (7%)

Query: 12  FIKLLTTYFVLIIFCIVPI------VSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
           F+K      +     ++ +          S   +      I    IT   +  ++     
Sbjct: 30  FMKKFNVSILAASALVLGLAVAGCTPGKDSAFSADNPVAKIGNVTITQEQMYDKLK---- 85

Query: 66  QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
                +  K  + ++I   L KQE    GIT     ++          G S E F  +L 
Sbjct: 86  ----KDAGKRVMADIITLELYKQEGAARGITVTDQELDARVNPVKEKLG-SPERFQQYLK 140

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
            + + +   ++ +    +   + + D  +    ++     NK K +              
Sbjct: 141 DKQMTEQELREGVRAVMLRDKLFEKDNPITEEQIKEYYEKNKDKFEGTFEEARPKVIEKV 200

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNK 218
              + +     ++++  K      +    +  K
Sbjct: 201 KSRNKRNNMDKWIEELYKKHNVQIMDKDLESEK 233


>gi|322376480|ref|ZP_08050973.1| foldase protein PrsA [Streptococcus sp. M334]
 gi|321282287|gb|EFX59294.1| foldase protein PrsA [Streptococcus sp. M334]
          Length = 312

 Score = 38.9 bits (88), Expect = 1.00,   Method: Composition-based stats.
 Identities = 36/313 (11%), Positives = 80/313 (25%), Gaps = 41/313 (13%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K L    + ++         K    +  I     G+VIT+    +++        N   +
Sbjct: 3   KKLLAGAITLLSVATLAACSKGSEGADLISMK--GDVITEHQFYEQVKS------NPSAQ 54

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           ++ +   I +  +KQ   +      ++T+     Q+  N           L+        
Sbjct: 55  QVLLNLTIQKVFEKQYGSEVDDKEVNDTIAEEEKQYGENYQRVLSQAGMTLET------- 107

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                  Q     +V+          E E+  +  K         +   ++    ++K +
Sbjct: 108 ----RKAQIRTSKLVELAVK---KAAEAELTDDAYKKAFDEYTPDVTAQIIRLDNEDKAK 160

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLK 251
                 K          +      K +         + G+  +   S   P+   +    
Sbjct: 161 EILEKAKASGADFAQLAKDNSTDEKTKA--------NGGEITFDSASTEVPEQVKKAAFA 212

Query: 252 KSQNNTTNPYVT------QKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEKH--EA 302
              N  ++                + +  K +    I   K  L       K        
Sbjct: 213 LDVNGVSDVIKATGTQAYSSQYYIVKLIKKTEKSSNIDDYKEKLKTVILTQKQNDATFVQ 272

Query: 303 EYVKKLRSNAIIH 315
             + K    A I 
Sbjct: 273 SIIGKELQAANIK 285


>gi|150005095|ref|YP_001299839.1| peptidyl-prolyl cis-trans isomerase [Bacteroides vulgatus ATCC
           8482]
 gi|294778904|ref|ZP_06744320.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
 gi|149933519|gb|ABR40217.1| peptidyl-prolyl cis-trans isomerase [Bacteroides vulgatus ATCC
           8482]
 gi|294447213|gb|EFG15797.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
          Length = 710

 Score = 38.9 bits (88), Expect = 1.00,   Method: Composition-based stats.
 Identities = 16/156 (10%), Positives = 39/156 (25%), Gaps = 4/156 (2%)

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           E                     L +        +    +++    +    + +  N    
Sbjct: 550 ENDHLMVVALEKINPAGYRNINLVADMLKAEIIKDKKAEKLIAEMKGANSIDQVKNMANA 609

Query: 222 FASKIHDVSIGKAQYL--LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
            +  +  ++     Y+    +          K   N  T P     GV  I + +K    
Sbjct: 610 VSDSVKHITFSAPAYVSVTRASEPALGAYASKAEVNKLTGPIKGNAGVYMIQVYNKEKSA 669

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            E   K       +     ++ + ++  L   A + 
Sbjct: 670 EEFDAKNE-ENNLSN-MAGRYASSFINDLYKKAEVK 703


>gi|313203966|ref|YP_004042623.1| ppic-type peptidyL-prolyl cis-trans isomerase [Paludibacter
           propionicigenes WB4]
 gi|312443282|gb|ADQ79638.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paludibacter
           propionicigenes WB4]
          Length = 704

 Score = 38.9 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/121 (12%), Positives = 37/121 (30%), Gaps = 10/121 (8%)

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFAS-KIHDVSIGKAQYLLESDLHP--QFQNLLKK 252
                +      +           +K+++ K    + G+  ++ E+   P  +  +    
Sbjct: 366 AKDATKADSLVSAIKGGADFGALAKKYSAVKQTAANGGEIGWMQEATQGPEKEITSQAFS 425

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
              N       ++GV+   + DK         +  +       KI      Y  K+ ++A
Sbjct: 426 KSKNDIFTIKDEQGVQIFQVMDK------TPARRKVKLAILERKIVPSSKSY-SKIYNDA 478

Query: 313 I 313
            
Sbjct: 479 K 479


>gi|166368195|ref|YP_001660468.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Microcystis
           aeruginosa NIES-843]
 gi|166090568|dbj|BAG05276.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Microcystis
           aeruginosa NIES-843]
          Length = 253

 Score = 38.9 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/222 (9%), Positives = 47/222 (21%), Gaps = 1/222 (0%)

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
                 I ++     + K G+              A  T    E  +++           
Sbjct: 6   EIGDHKISDSAVLPLLAKYGMLPQLFREVIIEQAIADITCNPEERNAAYSRFYQNNQIAN 65

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
            + +        +                   ++   N     +L            L  
Sbjct: 66  DEQMKSWLRQNGMDSEQLEYLILRDIKLEKFKQETWDNKVESYFLQVKNQLDKVVYSLIR 125

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKS 253
              +    +     + R        +K++      + G    +  S  HPQ  Q L    
Sbjct: 126 TKNIGIAQELFFRIQDRENSFAELAKKYSQGAEAETGGLIGPVELSTPHPQIGQILKASK 185

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT 295
                 P    + V  + +        +   +  L       
Sbjct: 186 PGQLWPPTQVGEWVVIVRLEKYLSCELDPPTRQRLRNDLFQQ 227


>gi|85717064|ref|ZP_01048025.1| hypothetical protein NB311A_10143 [Nitrobacter sp. Nb-311A]
 gi|85696102|gb|EAQ33999.1| hypothetical protein NB311A_10143 [Nitrobacter sp. Nb-311A]
          Length = 298

 Score = 38.9 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 7/80 (8%)

Query: 17 TTYFVLIIFCIVPIVSYKS----WAMSSRIRTTINGEVITDGDISKRIALLKLQKING-- 70
          T   + +   +V   S        A +S+I   +  +VIT  + +  + LL +       
Sbjct: 14 TAAVLGLCGLLVAGCSKNGGEQTSAPNSQIVAHVGDQVITTQEFANELRLLNIPPDKQKD 73

Query: 71 -ELEKIAVQELIVETLKKQE 89
           E  K  + E++      Q+
Sbjct: 74 HETVKKVLSEMVTRKYLLQQ 93


>gi|69244418|ref|ZP_00602834.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           DO]
 gi|258614785|ref|ZP_05712555.1| rotamase family protein [Enterococcus faecium DO]
 gi|293560739|ref|ZP_06677218.1| foldase protein PrsA [Enterococcus faecium E1162]
 gi|293566174|ref|ZP_06678577.1| foldase protein PrsA [Enterococcus faecium E1071]
 gi|314938540|ref|ZP_07845824.1| putative foldase protein PrsA [Enterococcus faecium TX0133a04]
 gi|314940885|ref|ZP_07847791.1| putative foldase protein PrsA [Enterococcus faecium TX0133C]
 gi|314948094|ref|ZP_07851496.1| putative foldase protein PrsA [Enterococcus faecium TX0082]
 gi|314952022|ref|ZP_07855045.1| putative foldase protein PrsA [Enterococcus faecium TX0133A]
 gi|314991903|ref|ZP_07857358.1| putative foldase protein PrsA [Enterococcus faecium TX0133B]
 gi|314995161|ref|ZP_07860275.1| putative foldase protein PrsA [Enterococcus faecium TX0133a01]
 gi|68196359|gb|EAN10787.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           DO]
 gi|291590100|gb|EFF21892.1| foldase protein PrsA [Enterococcus faecium E1071]
 gi|291605330|gb|EFF34785.1| foldase protein PrsA [Enterococcus faecium E1162]
 gi|313590570|gb|EFR69415.1| putative foldase protein PrsA [Enterococcus faecium TX0133a01]
 gi|313593487|gb|EFR72332.1| putative foldase protein PrsA [Enterococcus faecium TX0133B]
 gi|313595812|gb|EFR74657.1| putative foldase protein PrsA [Enterococcus faecium TX0133A]
 gi|313600243|gb|EFR79086.1| putative foldase protein PrsA [Enterococcus faecium TX0133C]
 gi|313642097|gb|EFS06677.1| putative foldase protein PrsA [Enterococcus faecium TX0133a04]
 gi|313645510|gb|EFS10090.1| putative foldase protein PrsA [Enterococcus faecium TX0082]
          Length = 336

 Score = 38.9 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 29/312 (9%), Positives = 82/312 (26%), Gaps = 44/312 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
            +  +     +  +        +++   T+ G  IT  D      L           +  
Sbjct: 4   KSIILAATSALAVLTLAACSGDTNKDIATMKGGTITVSDFYDEAKL-------ESSNQSL 56

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           VQ +I+  +      K G       V+  + + A++ G + E        Q     + K 
Sbjct: 57  VQRMIIYKV---FNNKYGDKVTDKQVDAEYDKQAKSLGDTFES-------QLEAAGYTKD 106

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
                       +          + ++          +    +   ++    +++ ++  
Sbjct: 107 TYKEYIRNNLAFEAGLKAHVDITDDDLKTAW-----KSFHPEVEAQIIKLSSEDEAKDVK 161

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF--QNLLKKS 253
                                  +  ++        GK ++   +   P    +   K  
Sbjct: 162 KSA----------DDGDDFSKLAKDKSTDTETKEDGGKVKFDSTTTTIPAEVKEAAFKLK 211

Query: 254 QNNTTNPYVTQK------GVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKI--EKHEAEY 304
               ++   T            + +   ++ G ++   K  L    T TK+       + 
Sbjct: 212 DGEISDVITTTNPTSYATEYYVVKMVKNQNKGNDMDKYKDQLKDIATETKLSDNAFTTKV 271

Query: 305 VKKLRSNAIIHY 316
           + +   +A +  
Sbjct: 272 IGEELKDANVKI 283


>gi|313159819|gb|EFR59175.1| PPIC-type PPIASE domain protein [Alistipes sp. HGB5]
          Length = 677

 Score = 38.9 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 10/113 (8%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
            + + T     + ++      ++  I+ + +   ++ +      I+GE I   +   +  
Sbjct: 4   LNTLRTKFGIVLSIVIAG--ALLAFILSLKTEMGFSGNDPRVGVIDGEKINYSEYYNQYE 61

Query: 62  LLKLQKINGELEKI--------AVQELIVETLKKQEIEKSGITFDSNTVNYFF 106
            +K Q    E  +         A Q LI + +     +K G+           
Sbjct: 62  QVKAQSGAQESNEQQSAMLANAAWQALIGKYVLTPGFDKMGLRVTEPERMSMV 114


>gi|167038249|ref|YP_001665827.1| hypothetical protein Teth39_1856 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116657|ref|YP_004186816.1| hypothetical protein Thebr_1904 [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166857083|gb|ABY95491.1| hypothetical protein Teth39_1856 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929748|gb|ADV80433.1| hypothetical protein Thebr_1904 [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 241

 Score = 38.9 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/171 (9%), Positives = 48/171 (28%), Gaps = 9/171 (5%)

Query: 38  MSSRIRTTINGEVITDGDISKRIAL-LKLQKINGELEKIAVQELIVETLKKQEIEKSGIT 96
               +    NG  I   +   R  L L  +    ++    + +L+ E +K+    K  + 
Sbjct: 62  NEGDVIAEANGIPIYKNEFELRKGLTLASEGQVNDINNFVLNKLVREKVKEYLAMKYNLK 121

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL--------AIQSIWPDVV 148
              + +N +  +  +      E      +        +++Y             ++  + 
Sbjct: 122 VSEDEINSYIEKEKQQFKEFPEAEGKLKELISASGMRYEEYWNDYERYNVKRMLLFDKLY 181

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
                    N E++             ++Y    +   +   K+      +
Sbjct: 182 NAIINEGIKNGELKKTDKMTIEVQNEYKKYFDNIIDQYVKQAKISIDEKYK 232


>gi|332983150|ref|YP_004464591.1| hypothetical protein Mahau_2629 [Mahella australiensis 50-1 BON]
 gi|332700828|gb|AEE97769.1| hypothetical protein Mahau_2629 [Mahella australiensis 50-1 BON]
          Length = 240

 Score = 38.9 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 35/136 (25%), Gaps = 27/136 (19%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIV-------------SYKSWAMSSRIRTTINGEVI 51
           +       I +     +LI F  +                +      +     TI    I
Sbjct: 1   MLKKTGTIIAIAAVALLLIAFFAINTGFAESMWSYIGEQAASIREQKNDATIATIGDARI 60

Query: 52  TDGDIS--------------KRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
           T  D+               K I  L+        ++  +  LI   +  QE  K G + 
Sbjct: 61  TQNDLDLAMLMREQAYELQSKEIDELQNMMPEQPTKEKVLDSLIENEILYQEAVKRGCSV 120

Query: 98  DSNTVNYFFVQHARNT 113
             +    +   + +  
Sbjct: 121 SLDEAKKYLEDNKKIY 136


>gi|319648995|ref|ZP_08003204.1| hypothetical protein HMPREF1012_04243 [Bacillus sp. BT1B_CT2]
 gi|317388989|gb|EFV69807.1| hypothetical protein HMPREF1012_04243 [Bacillus sp. BT1B_CT2]
          Length = 255

 Score = 38.9 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 61/188 (32%), Gaps = 13/188 (6%)

Query: 41  RIRTTINGEVITDGDISKRIALLKLQKIN-----------GELEKIAVQELIVETLKKQE 89
           +    +N E IT  D +  ++  ++Q               +++K A+  LI + L  QE
Sbjct: 65  KTVAVVNDEKITGKDYNSVLSTAQMQYQQTGQDPTSKDAAQQIKKQAIDSLIGQALITQE 124

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
            +K G       +     +  +      +     + K G+  N  K  +A        + 
Sbjct: 125 ADKKGYKASEKEIEKQLDESKKQYKNEQDFEE-AVKKAGLNMNTLKSDIADSIKTEKYID 183

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
            +        + EI     +            T  F     ++Q+    QKR +   +  
Sbjct: 184 KELPTD-QVTDKEIKDYYDQFAAQQKDSGQKNTPAFDDVKQQIQDMLKQQKRQEKLGQQV 242

Query: 210 LRLPKDCN 217
            +L K  +
Sbjct: 243 EKLKKSAD 250


>gi|75910578|ref|YP_324874.1| hypothetical protein Ava_4381 [Anabaena variabilis ATCC 29413]
 gi|75704303|gb|ABA23979.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
          Length = 260

 Score = 38.9 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/237 (6%), Positives = 57/237 (24%), Gaps = 2/237 (0%)

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
               K++++++I       ++        +  +     +         E   S    +  
Sbjct: 2   ENFLKLSIEDIITHLKVSFQMPSILEAIATQRIIAETAEQLGIQLSVEELQQSADSMRFA 61

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                            +  +DF     +  + +   +    +     +    + ++   
Sbjct: 62  NRLLKADDTWNWLQKHYLTIDDFEEVAKSNLLHMKLAEHLFADKVEPFFYAHKIDYTGAA 121

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYLLESDL-HPQFQ 247
                       ++     +           ++        + G       S+       
Sbjct: 122 TYEVILDDEDLALELFYALQEGEISFQEIARQYIQNPEIRRAGGYQGIRYRSEFRPEIAA 181

Query: 248 NLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
            +   +      P +T KGV  IA+ +      + + +  +        +++     
Sbjct: 182 AVFAATPPQVLKPIITPKGVHIIAVEEIITPELDESRRIQILKDFFTHWLQQQITNL 238


>gi|220919173|ref|YP_002494477.1| DSBA oxidoreductase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957027|gb|ACL67411.1| DSBA oxidoreductase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 349

 Score = 38.9 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQEIEKSGIT 96
              + G+ IT G++ + +     Q          +L++  ++ +I   + + + +  GIT
Sbjct: 35  VAKVGGQAITTGELDELVKSDLKQLEQQYEEQKYQLKRQGLESMIRRRVFEAKAKAEGIT 94

Query: 97  FDSNTVNYFF 106
            D        
Sbjct: 95  PDELVNRDVV 104


>gi|254883229|ref|ZP_05255939.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 4_3_47FAA]
 gi|319642604|ref|ZP_07997250.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_40A]
 gi|254836022|gb|EET16331.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 4_3_47FAA]
 gi|317385692|gb|EFV66625.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_40A]
          Length = 710

 Score = 38.9 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/156 (10%), Positives = 40/156 (25%), Gaps = 4/156 (2%)

Query: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK 221
           E                     L +        +    +++    +    + +  N    
Sbjct: 550 ENDHLMVVALEKINPAGYRNINLVADMLKAEIIKDKKAEKLIAEMKGANSIDQVKNMANA 609

Query: 222 FASKIHDVSIGKAQYL--LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
            +  +  ++     Y+    +         +K   N  T P     GV  I + +K    
Sbjct: 610 VSDSVKHITFSAPAYVSVTRASEPALGAYAIKAEVNKLTGPIKGNAGVYMIQVYNKEKSA 669

Query: 280 GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            E   K       +     ++ + ++  L   A + 
Sbjct: 670 EEFDAKNE-ENNLSN-MAGRYASSFINDLYKKAEVK 703


>gi|146279132|ref|YP_001169291.1| hypothetical protein Rsph17025_3102 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557373|gb|ABP71986.1| hypothetical protein Rsph17025_3102 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 655

 Score = 38.9 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/151 (10%), Positives = 44/151 (29%), Gaps = 17/151 (11%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD----ISKRIALLKLQKING 70
           ++    V ++   +      ++        ++    IT  D    + + +  L  Q    
Sbjct: 53  IVFWGLVALMAVGLGGFGVTNFGGGLSTVGSVGDRDITTADYARALQQEMRALGAQINQP 112

Query: 71  ---------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG----LSA 117
                     L++   + L+ +     E ++ G++     V           G       
Sbjct: 113 VTMEMARAFGLDQQVRRRLVTQAALSNEADRVGLSVGDARVAEEITGSDSFHGPSGQFDR 172

Query: 118 EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
           E +   L +  + ++ F+  L        + 
Sbjct: 173 ETYRLVLRQNNLSESEFENGLREDISRSLLQ 203


>gi|86357790|ref|YP_469682.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli CFN 42]
 gi|86281892|gb|ABC90955.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli CFN 42]
          Length = 646

 Score = 38.9 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/396 (8%), Positives = 87/396 (21%), Gaps = 86/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEV--ITDGDISK 58
           M   +  +   ++  L    ++  F I  I        SS    T+  +   +T+  ++ 
Sbjct: 17  MFHLLRRAAQTWVAKLLLLLLVASFGIWGISRELISGGSSTTVVTVGDQKVGVTEFQLAY 76

Query: 59  R-----------IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
           +           + L   Q     +E+  + +L+      Q  E   +    + +     
Sbjct: 77  QRQVTSIGQQFGMRLTPEQARAFGVEQQVLSQLVAGASLDQLAEDMNLGLSEDRLAQLIG 136

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM-------------- 153
                  ++ +        +       +     +     V                    
Sbjct: 137 DDPAFKAVNGQFDRELFVSRLRNAGIRQDDYIKERSKVAVRSQIVDAVSNGFTAPKTLID 196

Query: 154 ----------------------LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                                         ++ A+  +      R    R +++      
Sbjct: 197 ALKLYGDESRSIDYLLLTNANIEPIKAPADDVLASWFEGVKQRYRAPEYRKLIYLKLQPA 256

Query: 192 LQNQGFVQKRIKDAEESR-----------LRLPKDCNKLEKFASKI-HDVSIG------- 232
                      +  E                + +     +  A+     +  G       
Sbjct: 257 DIADAATVTDDQIREAFEKGKDSYRTPESRTIEQLTFASKDLATAAETALKGGTSFDQLL 316

Query: 233 -KAQYLLESDLHPQFQNLLKKSQ------------NNTTNPYVTQKGVEYIAICDKRD-- 277
                     L  +F       Q              TT       G   + I + +   
Sbjct: 317 TDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSKDGGTTPVVDGSFGPVILRITNIKPET 376

Query: 278 LGGEIALKAYLSAQN-TPTKIEKHEA--EYVKKLRS 310
           +     +K  +  Q       ++     + ++ +R+
Sbjct: 377 VKNFDEVKEDIRKQLALSNASQEVINVHDRIEDMRA 412


>gi|148926659|ref|ZP_01810340.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145845178|gb|EDK22273.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 496

 Score = 38.9 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 64/227 (28%), Gaps = 19/227 (8%)

Query: 3   SKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIAL 62
            K +  ++ ++  +   FV   F       +     SS    T+  E I   +   R   
Sbjct: 8   HKKYLVVTIWVSTI--AFVGAGFLGWGAYDFNLNRSSS--VATVGNEKIGFSEFDTRYRQ 63

Query: 63  L-------------KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
           +                     ++ IA+  L+ + L     +  GI  + N +       
Sbjct: 64  ILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANT 123

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
                 + +   +   +    +N   +    Q     +       +  N+  +    K  
Sbjct: 124 REFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEAITDKL--NQIFNIPSKDEELKML 181

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
             +  +++ L    +     N   N+  ++K   + +E         
Sbjct: 182 ASSYFMQDALSIAKIDYDKKNIKINEEDLKKLWNEHKEDYKTKKIYE 228


>gi|219682383|ref|YP_002468767.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str.
           Tuc7 (Acyrthosiphon pisum)]
 gi|219622116|gb|ACL30272.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str.
           Tuc7 (Acyrthosiphon pisum)]
 gi|311086780|gb|ADP66861.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str.
           TLW03 (Acyrthosiphon pisum)]
          Length = 623

 Score = 38.9 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/260 (10%), Positives = 69/260 (26%), Gaps = 9/260 (3%)

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            + +  L             +++ I        I KS         N   +   +     
Sbjct: 137 ERYLNYLTSINSTNHEYINIIKKKINTENLIHTISKSNFILKKEEKNIIKLLSQKRIIKK 196

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
           A         +    N   Q    ++     +   F  K   +E++    K   +N  + 
Sbjct: 197 AIVKIDPSIYKKNITNQEAQIYFKKNQDNFYIPEKF--KINFVELKTDNFKIHCENKEIY 254

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-----DVSI 231
           ++ IR +       K +      K  + A     RL        K A +           
Sbjct: 255 DWYIRNITQYSTKEKRRYSIIQVKNKQQAISILSRLHNTPEDFSKIAQEQSTDPISSKKD 314

Query: 232 GKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ 291
           G   ++    +  + ++     +N  ++          + + + +    +      +   
Sbjct: 315 GDIGWISIDLIPDEIKHANLNKKNQISDVIPFHNEFLIVKLDETQIGTQKKIY--EVFDS 372

Query: 292 NTPTKIEKHEAEYVKKLRSN 311
                 +K   +   +L++ 
Sbjct: 373 IKKQIKQKKSLDLYNELKNK 392


>gi|211970998|dbj|BAG82828.1| membrane fusion protein [Pasteurella pneumotropica]
          Length = 474

 Score = 38.9 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/156 (9%), Positives = 42/156 (26%), Gaps = 2/156 (1%)

Query: 45  TINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
            I+ E I+  ++ +   L+  Q     L++     L+ +   +    K  +  +      
Sbjct: 169 KIDDESISSVELQQSRQLILAQFNTYLLQQQKAAALLDQKQAEYITIK--MQINKYRSLQ 226

Query: 105 FFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIP 164
              +   N   +    ++    Q +        +  + +  +   N+   +    + E  
Sbjct: 227 KLEKEKTNDLANLLKSNAISKHQYLEQKARFLDINNEILTLESRLNEINAEIQQAKDEKE 286

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
                    T                + +     QK
Sbjct: 287 LLTNTFTRDTQDALRQANEQIKQLVFEKEKYAERQK 322


>gi|107099020|ref|ZP_01362938.1| hypothetical protein PaerPA_01000028 [Pseudomonas aeruginosa PACS2]
          Length = 428

 Score = 38.9 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/171 (8%), Positives = 48/171 (28%), Gaps = 14/171 (8%)

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
            +   K  + + E    +   +   V +     +  +   +  +    ++  +   E  R
Sbjct: 265 RELAGKVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRSGLAFDEAVR 324

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLE--SDLHPQFQNLLKKSQNNTTNPYVTQKGV 267
                        A        G    +      L    +  L +  +  + P       
Sbjct: 325 R---------YSLADDRDRDPPGDLGLIRPQDGRLDLLRKTALIQKADTVSQPMRIDCAF 375

Query: 268 EYIAI---CDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           E + +    D++    + +++  ++      ++       ++ L + A + 
Sbjct: 376 EIVRVRSREDRQLPLDDRSVRFEVNQAVAREQLAAQFETRLRNLLAGARVE 426


>gi|326387876|ref|ZP_08209482.1| hypothetical protein Y88_0791 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326207922|gb|EGD58733.1| hypothetical protein Y88_0791 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 645

 Score = 38.5 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/164 (8%), Positives = 47/164 (28%), Gaps = 25/164 (15%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSS------------RIRTTINGEVITDGDI 56
           L  F  ++ + F  ++  +  ++   ++A +                 T+    I+  ++
Sbjct: 2   LGFFRAIIKSRFGAVLGLVFLVLIVLAFAGADVSGLRTGNLFGGDDVATVGHTGISSREL 61

Query: 57  SKRIA-------------LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVN 103
            K +               +K    +    +  +  LI     ++  +K+GI      ++
Sbjct: 62  DKTVRAAFDGERQRTPTLTMKDFVTSQNALEEVLSGLIDRAAVQEWGQKNGIGVSDRLID 121

Query: 104 YFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
               +     G   +      ++         + +        +
Sbjct: 122 SEIAKLPAFQGPDGKFSQQVYNQLIAQRGLTDKQVREDIAKGLM 165


>gi|294618799|ref|ZP_06698326.1| foldase protein PrsA [Enterococcus faecium E1679]
 gi|291594987|gb|EFF26337.1| foldase protein PrsA [Enterococcus faecium E1679]
          Length = 336

 Score = 38.5 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/312 (9%), Positives = 82/312 (26%), Gaps = 44/312 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
            +  +     +  +        +++   T+ G  IT  D      L           +  
Sbjct: 4   KSIILAATSALAVLTLAACSGDTNKDIATMKGGTITVSDFYDEAKL-------KSSNQSL 56

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           VQ +I+  +      K G       V+  + + A++ G + E        Q     + K 
Sbjct: 57  VQRMIIYKV---FNNKYGDKVTDKQVDAEYDKQAKSLGDTFES-------QLEAAGYTKD 106

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
                       +          + ++          +    +   ++    +++ ++  
Sbjct: 107 TYKEYIRNNLAFEAGLKAHVDITDDDLKTAW-----KSFHPEVEAQIIKLSSEDEAKDVK 161

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF--QNLLKKS 253
                                  +  ++        GK ++   +   P    +   K  
Sbjct: 162 KSA----------DDGDDFSKLAKDKSTDTETKEDGGKVKFDSTTTTIPAEVKEAAFKLK 211

Query: 254 QNNTTNPYVTQK------GVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKI--EKHEAEY 304
               ++   T            + +   ++ G ++   K  L    T TK+       + 
Sbjct: 212 DGEISDVITTTNPTSYATEYYVVKMVKNQNKGNDMDKYKDQLKDIATETKLSDNAFTTKV 271

Query: 305 VKKLRSNAIIHY 316
           + +   +A +  
Sbjct: 272 IGEELKDANVKI 283


>gi|254478727|ref|ZP_05092097.1| hypothetical protein CDSM653_484 [Carboxydibrachium pacificum DSM
           12653]
 gi|214035341|gb|EEB76045.1| hypothetical protein CDSM653_484 [Carboxydibrachium pacificum DSM
           12653]
          Length = 238

 Score = 38.5 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/152 (11%), Positives = 42/152 (27%), Gaps = 9/152 (5%)

Query: 41  RIRTTINGEVITDGDISKRIAL-LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDS 99
            +   +NG  I   +   R  L L        ++   +Q+LI E +++    K  I    
Sbjct: 65  DVIAEVNGIPIYKNEFELRKGLALASGVQADNIDDYVLQKLIKEKVQEYLASKYNIRVSE 124

Query: 100 NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL--------AIQSIWPDVVKND 151
           + +N +  +  +      E      +          +Y             ++  +    
Sbjct: 125 SEINEYIEKEKKEFNEYPEAKKKLDELINASGMTEDEYWNTYERYNARRILLFNKLYNFI 184

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
                   E++             ++Y    +
Sbjct: 185 VEEGMKKGELKKVEQMSSGTQNEYKKYFDDVI 216


>gi|86160366|ref|YP_467151.1| DsbA oxidoreductase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776877|gb|ABC83714.1| DsbA oxidoreductase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 349

 Score = 38.5 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKING------ELEKIAVQELIVETLKKQEIEKSGIT 96
              + G+ IT G++ + +     Q          +L++  ++ +I   + + + +  GIT
Sbjct: 35  VAKVGGQAITAGELDELVKSDLKQLEQQYEEQKYQLKRQGLESMIRRRVFEAKAKAEGIT 94

Query: 97  FDSNTVNYFF 106
            D        
Sbjct: 95  PDELVNRDVV 104


>gi|17229417|ref|NP_485965.1| hypothetical protein alr1925 [Nostoc sp. PCC 7120]
 gi|17131015|dbj|BAB73624.1| alr1925 [Nostoc sp. PCC 7120]
          Length = 242

 Score = 38.5 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/251 (7%), Positives = 59/251 (23%), Gaps = 21/251 (8%)

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            + +  LK      E+ +  + +     + +    +               Q        
Sbjct: 12  EEIVNFLKKNMQLKEVYQKILFQ---RLILQVAEARGITVTTEEIEAEANRQRREKRLEK 68

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
           A D  ++L  Q      ++  +  + +   +    F  K     ++     +++    + 
Sbjct: 69  AADTMAWLADQLASPEDWEMGIRDRLLSQKLANFLFADKVEAFFIQNQLEFEQVSLYQII 128

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
               +         + +   F +       ++  R                    G    
Sbjct: 129 VDSEKLAQEIYYQIEDEEISFYEAAYLYDVDAVRR-----------------QRCGYEGK 171

Query: 237 LLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT 295
           +    L       + + S     +P  T++G     + +             +       
Sbjct: 172 VYRFSLPVNVATVIFRTSPKQLISPLQTEQGYHLFMVEEFIPAELTGERYQEILNNMFNQ 231

Query: 296 KIEKHEAEYVK 306
            +     + + 
Sbjct: 232 WLITELNKILN 242


>gi|84500963|ref|ZP_00999198.1| hypothetical protein OB2597_02472 [Oceanicola batsensis HTCC2597]
 gi|84391030|gb|EAQ03448.1| hypothetical protein OB2597_02472 [Oceanicola batsensis HTCC2597]
          Length = 612

 Score = 38.5 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/192 (7%), Positives = 35/192 (18%), Gaps = 13/192 (6%)

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
                             F      +  +  +     + +    E  +    +   +   
Sbjct: 200 FEPSEEDLRALYDELIEDFTLPERKRITYAWLTPEMILDQVEIDEDLLRQEYEARSDQYN 259

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
           R    R V   I  ++ +      +      +    + +    L                
Sbjct: 260 RPER-RLVERLIYADQGRAAEAADRLENGEADFETLVEERGLTLSDI----------DMG 308

Query: 236 YLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT 295
            +  +DL      +          P  T  G  +  +     L  E              
Sbjct: 309 DVSRADLGAAGDPVFAAESGEIVGPVETDLGPAFFRVNGI--LSAEETTFEEALPDLRQE 366

Query: 296 KIEKHEAEYVKK 307
                    V  
Sbjct: 367 LAFDRARRRVAN 378


>gi|257439957|ref|ZP_05615712.1| putative Tat pathway signal sequence [Faecalibacterium
          prausnitzii A2-165]
 gi|313114555|ref|ZP_07800068.1| Tat pathway signal sequence [Faecalibacterium cf. prausnitzii
          KLE1255]
 gi|257197564|gb|EEU95848.1| putative Tat pathway signal sequence [Faecalibacterium
          prausnitzii A2-165]
 gi|295103669|emb|CBL01213.1| hypothetical protein [Faecalibacterium prausnitzii SL3/3]
 gi|310623121|gb|EFQ06563.1| Tat pathway signal sequence [Faecalibacterium cf. prausnitzii
          KLE1255]
          Length = 176

 Score = 38.5 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 8  SLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
          S   FIK LT   + I   ++      ++A S+  + T+   V+T  ++ +  A  KL
Sbjct: 2  STRKFIKKLTASLLFIA-VVMSFGVQSAFAESNSPKATVKNNVVTFSNLDQLKANEKL 58


>gi|219681828|ref|YP_002468214.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471530|ref|ZP_05635529.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str.
           LSR1 (Acyrthosiphon pisum)]
 gi|219624671|gb|ACL30826.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 623

 Score = 38.5 bits (87), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/260 (10%), Positives = 69/260 (26%), Gaps = 9/260 (3%)

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            + +  L             +++ I        I KS         N   +   +     
Sbjct: 137 ERYLNYLTSINSTNHEYINIIKKKINTENLIHTISKSNFILKKEEKNIIKLLSQKRIIKK 196

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
           A         +    N   Q    ++     +   F  K   +E++    K   +N  + 
Sbjct: 197 AIVKIDPSIYKKNITNQEAQIYFKKNQDNFYIPEKF--KINFVELKTDNFKIHCENKEIY 254

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-----DVSI 231
           ++ I+ +       K +      K  + A     RL        K A +           
Sbjct: 255 DWYIKNITQYSTKEKRRYSIIQVKNKQQAISILSRLHNTPEDFSKIAQEQSTDPISSKKD 314

Query: 232 GKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQ 291
           G   ++    +  + ++     +N  ++          + + + +    +      +   
Sbjct: 315 GDIGWISIDLIPDEIKHANLNKKNQISDVIPFHNEFLIVKLNETQIGTQKKIY--EVFDS 372

Query: 292 NTPTKIEKHEAEYVKKLRSN 311
                 +K   +   +L++ 
Sbjct: 373 IKKQIKQKKSLDLYNELKNK 392


>gi|326391575|ref|ZP_08213106.1| hypothetical protein TheetDRAFT_2347 [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992405|gb|EGD50866.1| hypothetical protein TheetDRAFT_2347 [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 241

 Score = 38.5 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/171 (9%), Positives = 47/171 (27%), Gaps = 9/171 (5%)

Query: 38  MSSRIRTTINGEVITDGDISKRIALLKLQKIN-GELEKIAVQELIVETLKKQEIEKSGIT 96
               +    NG  I   +   R  L    +    ++    + +L+ E +K+    K  + 
Sbjct: 62  NEGDVIAEANGIPIYKNEFELRKGLTFASEGQVNDINNFVLNKLVREKVKEYLAMKYNLK 121

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL--------AIQSIWPDVV 148
              + +N +  +  +      E      +        +++Y             ++  + 
Sbjct: 122 VSEDEINSYIEKEKQQFKEFPEAEGKLKELISASGMTYEEYWNDYERYNVKRMLLFDKLY 181

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
                    N E++             ++Y    +   +   K+      +
Sbjct: 182 NAIINEGIKNGELKKTDKMTIEVQNEYKKYFDNIIDQYVKQAKISIDEKYK 232


>gi|293556277|ref|ZP_06674862.1| foldase protein PrsA [Enterococcus faecium E1039]
 gi|291601536|gb|EFF31803.1| foldase protein PrsA [Enterococcus faecium E1039]
          Length = 336

 Score = 38.5 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/312 (8%), Positives = 81/312 (25%), Gaps = 44/312 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
            +  +     +  +        +++   T+ G  IT  D      L           +  
Sbjct: 4   KSIILAATSALAVLTLAACSGDTNKDIATMKGGTITVSDFYDEAKL-------ESSNQSL 56

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           VQ +I+  +      K G       V+  + + A++ G + E        Q     + K 
Sbjct: 57  VQRMIIYKV---FNNKYGDKVTDKQVDAEYDKQAKSLGDTFES-------QLEAAGYTKD 106

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
                       +          + ++          +    +   ++    +++ ++  
Sbjct: 107 TYKEYIRNNLAFEAGLKAHVDITDDDLKTAW-----KSFHPEVEAQIIKLSSEDEAKDVK 161

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF--QNLLKKS 253
                                  +  ++        GK ++   +   P    +   K  
Sbjct: 162 KSA----------DDGDDFSKLAKDKSTDTETKEDGGKVKFDSTTTTIPAEVKEAAFKLK 211

Query: 254 QNNTTNPYVTQK------GVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKI--EKHEAEY 304
               ++   T            + +   ++ G ++   K  L    T  K+       + 
Sbjct: 212 DGEISDVITTTNPTSYATEYYVVKMVKNQNKGNDMDKYKDQLKDIATEIKLSDNAFTTKV 271

Query: 305 VKKLRSNAIIHY 316
           + +   +A +  
Sbjct: 272 IGEELKDANVKI 283


>gi|317009631|gb|ADU80211.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori India7]
          Length = 487

 Score = 38.5 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 33/313 (10%), Positives = 85/313 (27%), Gaps = 20/313 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +    +  I   +      S+++ S     +    I+  ++++  
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEY 60

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             LK             +EL  + +K   +EKS    DS          A + GL A   
Sbjct: 61  RRLKDAYAESIPN---FKELTEDQIKAMHLEKSA--LDSLINQALLRNLALDLGLGATKQ 115

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
               + +             +     + ++ +  K+    +E     QK+  +  +    
Sbjct: 116 EVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP 175

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
                     KLQ++  +     +  +       + K     +K   K          + 
Sbjct: 176 LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTRFKTRSLYFD 235

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
              +     +      +N  +             +  +  L    +++  +    +  K 
Sbjct: 236 ASLEKPDLKELEEYYHKNKVS------------YLDKEGKLQDFKSVQEQVKHDLSMQKA 283

Query: 298 EKHEAEYVKKLRS 310
            +        L+ 
Sbjct: 284 NEKALRSYVALKK 296


>gi|190891851|ref|YP_001978393.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli CIAT 652]
 gi|190697130|gb|ACE91215.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli CIAT 652]
          Length = 630

 Score = 38.5 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/396 (6%), Positives = 79/396 (19%), Gaps = 86/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVI--------T 52
           M   +  +   ++  L    ++  F I  +        SS    T+  + +         
Sbjct: 1   MFHFLRRAAQTWVAKLLLLLLVASFGIWGVSRELISGGSSTTVVTVGDQHVGVNEFHLAY 60

Query: 53  DGDISKRIALLKLQKINGELE-----KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
              ++       ++    +       +  + +L+      Q  E   +    + +     
Sbjct: 61  QRQVASLSQQFGMRLTPEQARAFGVEQQVLSQLVAGASLDQLAEDMNLGLSEDRLAQLIG 120

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM-------------- 153
                  ++ +        +       +     +     V                    
Sbjct: 121 DDPAFKAVNGQFDRELFVSRLRNAGIRQDDYIKERSKVAVRSQIVDAVSNGFTAPKTLVD 180

Query: 154 ----------------------LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                                         ++ A   +      R    R + +      
Sbjct: 181 ALKLYGDESRSVDYLLLTNANIEPIKAPADDVLAAWFEGVKQRYRAPEYRKIAYLKLQPA 240

Query: 192 LQNQGFV--------------------QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
                                      + R  +      +      +    +    D  +
Sbjct: 241 DIADAATVTDDQVREAFDKGKDSYRTPESRTIEQLTFTSKDLAAAAETALKSGTSFDQLV 300

Query: 232 GKAQYLLESDLHPQFQNLLKKSQ------------NNTTNPYVTQKGVEYIAICDKR--D 277
                     L  +F       Q              TT       G   + I + +   
Sbjct: 301 SDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSKDGGTTPVVDGSFGPVILRITNIKAET 360

Query: 278 LGGEIALKAYLSAQN-TPTKIEKHEA--EYVKKLRS 310
                 +K  +  Q       ++     ++++ LR+
Sbjct: 361 TKNFDEVKDEIRKQLALSNASQEVINVHDHIEDLRA 396


>gi|307293346|ref|ZP_07573192.1| peptidyl-prolyl cis-trans isomerase D [Sphingobium chlorophenolicum
           L-1]
 gi|306881412|gb|EFN12628.1| peptidyl-prolyl cis-trans isomerase D [Sphingobium chlorophenolicum
           L-1]
          Length = 649

 Score = 38.5 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/172 (9%), Positives = 39/172 (22%), Gaps = 22/172 (12%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVS----------YKSWAMSSRIRTTINGEVITDG 54
           + +    FI+     F  +IF  +   +          + S   S        G  +T  
Sbjct: 1   MLSVFRRFIRSKFGAFTALIFLAIIAAAFIMGDITSGKFGSSIGSGETVAKAGGSKLTMA 60

Query: 55  DISKRIALLKLQKINGEL------------EKIAVQELIVETLKKQEIEKSGITFDSNTV 102
           +   R+  +                           +L+     K+      +      V
Sbjct: 61  EFQDRVQRVFENARRSNPGLQIGDFLAQGGGAQVYDQLVASMTLKEYAGDQKVHISKRLV 120

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML 154
           +    Q       +         +  + +   +Q L        + +     
Sbjct: 121 DAQIAQIPAFQDAAGNFSQENFRQLLLRERITEQALRDDIGREILERQMLAP 172


>gi|208434878|ref|YP_002266544.1| peptidyl-prolylcis-transisomerase D [Helicobacter pylori G27]
 gi|208432807|gb|ACI27678.1| peptidyl-prolylcis-transisomerase D [Helicobacter pylori G27]
          Length = 505

 Score = 38.5 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 35/320 (10%), Positives = 89/320 (27%), Gaps = 21/320 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +    +  I   +      S+++ S     +    I+  ++++  
Sbjct: 19  MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEY 78

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             LK        +    +EL  + +K   +EKS    DS          A + GL A   
Sbjct: 79  RRLKDAYAESIPD---FKELTEDQIKAMHLEKSA--LDSLINQALLRNLALDLGLGATKQ 133

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
               + +             +     + ++ +  K+    +E     QK+  +  +    
Sbjct: 134 EVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP 193

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
                     KLQ++  +     +  +       + K     +K   K          + 
Sbjct: 194 LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFD 253

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
              +     +      +N  +             +  +  L    +++  +    +  K 
Sbjct: 254 AGLEKTDLKELEEYYHKNKVS------------YLDKEGKLQDFKSVQEQVKHDLSMQKA 301

Query: 298 EKHEAEYVKKLRSNAIIHYY 317
            +        L+  A +  Y
Sbjct: 302 NEKALRSYIALK-KANVQNY 320


>gi|75910582|ref|YP_324878.1| hypothetical protein Ava_4385 [Anabaena variabilis ATCC 29413]
 gi|75704307|gb|ABA23983.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
          Length = 252

 Score = 38.5 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/251 (7%), Positives = 58/251 (23%), Gaps = 21/251 (8%)

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            + +  LK      E+ +  + +     + +    K          +    Q        
Sbjct: 12  EEIVNFLKKNMQLKEVYQKILFQ---RLILQVAEAKGITVTTEEIESEANRQRREKRLEK 68

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
           A D  ++L         ++  +  + +   +    F  K     ++     +++    + 
Sbjct: 69  AADTLAWLTDHLASPEDWEMGIRDRLLSQKLANFLFADKVEAFFLQNQLEFEQVSLYQII 128

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
               +         + +   F +       ++  R                    G    
Sbjct: 129 VNSEKLAQEIYYQIEDEEISFYEAAYLYDVDAVRR-----------------QRCGYEGK 171

Query: 237 LLESDLHPQFQN-LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT 295
           +    L       + + S     +P  T +G     + +             +       
Sbjct: 172 VYRFSLPVNVATVIFRTSPKQLISPLQTDQGYHLFMVEEFIPAELTGERYQEILNNMFNQ 231

Query: 296 KIEKHEAEYVK 306
            +     + + 
Sbjct: 232 WLITELNKILN 242


>gi|332883586|gb|EGK03867.1| hypothetical protein HMPREF9456_01408 [Dysgonomonas mossii DSM
           22836]
          Length = 708

 Score = 38.5 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 70/244 (28%), Gaps = 19/244 (7%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI- 60
             K+ +  S  I ++    +  +     I S+ + +       T++GEV+T      RI 
Sbjct: 4   LQKIRSKSSLLIGVIALGLLAFVLPWSEISSFINKSKDK--AFTVDGEVVTTRQYQDRIA 61

Query: 61  -----------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
                           +    ++ ++  Q+++ E +  ++  + G+      +N      
Sbjct: 62  QWEHFQKIMSGQNSLDENATLQIREMVYQQMVKEIILDKQAAQLGLNVTKEELNDMVT-- 119

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
                  A                F++    Q I      +  + +    E++       
Sbjct: 120 ---GPNVAPILHQIPFFVNPQTGQFERAALNQFIQTISQDDTNLPENQRAEIQARREIWT 176

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
                ++   +     +I    +       K   D  +++  +     K    A  +   
Sbjct: 177 FIQNMMKYQRLEEKYSAIVAGIVIPTDTEAKSAFDDSKTQASISYVVQKYASIADSLVAK 236

Query: 230 SIGK 233
            +  
Sbjct: 237 EVTD 240


>gi|332707265|ref|ZP_08427318.1| Parvulin-like peptidyl-prolyl isomerase [Lyngbya majuscula 3L]
 gi|332353999|gb|EGJ33486.1| Parvulin-like peptidyl-prolyl isomerase [Lyngbya majuscula 3L]
          Length = 149

 Score = 38.5 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/142 (8%), Positives = 40/142 (28%), Gaps = 11/142 (7%)

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
            ++     + +       +   ++         +Q    +     ++  +      ++  
Sbjct: 18  DKVEPYFFENQLDYAGVVMYEVII--------DDQDLAMELFYGIQKGEMSFYDVAHQYI 69

Query: 221 KFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLG 279
           +   K      G    +    + P+    +          P VT KGV  I + +  +  
Sbjct: 70  Q--DKELRRYGGYQGVVTREQIKPEISAAVFAAKPPEVLKPIVTSKGVHLILVEEIIEPQ 127

Query: 280 GEIALKAYLSAQNTPTKIEKHE 301
            +  L++ +         ++  
Sbjct: 128 LDDKLRSQILLNLFSEWTKQQV 149


>gi|298503010|ref|YP_003724950.1| peptidylprolyl isomerase [Streptococcus pneumoniae TCH8431/19A]
 gi|298238605|gb|ADI69736.1| peptidylprolyl isomerase [Streptococcus pneumoniae TCH8431/19A]
          Length = 344

 Score = 38.5 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 35/313 (11%), Positives = 79/313 (25%), Gaps = 41/313 (13%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K L    + ++         K    +  I     G+VIT+    +++        N   +
Sbjct: 34  KKLLAGAITLLSVATLAACSKGSEGADLISMK--GDVITEHQFYEQVK------NNPSAQ 85

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           ++ +   I +  +KQ   +       +T+     Q+  N           L+        
Sbjct: 86  QVLLNMTIQKVFEKQYGSELDDKEVDDTIAEEKKQYGENYQRVLSQAGMTLET------- 138

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                  Q     +V+          E E+     K         +   ++    ++K +
Sbjct: 139 ----RKAQIRTSKLVELAVK---KVAEAELTDEAYKKAFDEYTPDVTAQIIRLNNEDKAK 191

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLK 251
                 K          +      K ++        + G+  +   S   P+   +    
Sbjct: 192 EVLEKAKAEGADFAQLAKDNSTDEKTKE--------NGGEITFDSASTEVPEQVKKAAFA 243

Query: 252 KSQNNTTNPYVT------QKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEK--HEA 302
              +  ++                + +  K +    I   K  L       K        
Sbjct: 244 LDVDGVSDVITATGTQAYSSQYYIVKLTKKTEKSSNIDDYKEKLKTVILTQKQNDSTFVQ 303

Query: 303 EYVKKLRSNAIIH 315
             + K    A I 
Sbjct: 304 SIIGKELQAANIK 316


>gi|317182276|dbj|BAJ60060.1| hypothetical protein HPF57_0986 [Helicobacter pylori F57]
          Length = 487

 Score = 38.5 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 35/317 (11%), Positives = 89/317 (28%), Gaps = 21/317 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +    +  I   +      S+++ S     +    I+  ++++  
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEY 60

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             LK             +EL  + +K   +EKS    DS          A + GL A   
Sbjct: 61  RRLKDAYAESIPN---FKELTEDQIKAMHLEKSA--LDSLINQALLRNLALDLGLGATKQ 115

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
               + +             +     + ++ +  K+    +E     QK+  +  +    
Sbjct: 116 EVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP 175

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
                     KLQ++  +     +  +       + K     +K   K          + 
Sbjct: 176 LEQSSLSLWAKLQDKLDILILNPNDIKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFD 235

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
              +     +      +N  +             +  +  L    +++  +    +  K 
Sbjct: 236 ASLEKPDLKELEEYYHKNKVS------------YLDKEGKLQDFKSVQEQVKHDLSMQKA 283

Query: 298 EK-HEAEYVKKLRSNAI 313
            +     Y+   ++NA 
Sbjct: 284 NEKALRSYIALKKANAQ 300


>gi|309378642|emb|CBX22713.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 251

 Score = 38.5 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/166 (7%), Positives = 44/166 (26%), Gaps = 9/166 (5%)

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           V     + +      E     ++ + ++  E               Q     +   + A+
Sbjct: 85  VQNRFKIAEASFYAQEYVRFLERSETVSESELRQFYERQIRMIKLQQVGFATEDEARQAQ 144

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTT-NPYVTQ 264
           +  L+       ++++ +           +++   L     +     ++ + T +P    
Sbjct: 145 QLLLKGLSFEGLMKRYPNDEQAFD----GFIMAQQLPEPLASQFAGMNRGDVTRDPIRLG 200

Query: 265 KGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
                  + +     D      ++  L       K        +++
Sbjct: 201 GRYYLFKLSEVGKNPDAQPFELVRNQLEQGLKQEKARLKIDALLEE 246


>gi|313667752|ref|YP_004048036.1| hypothetical protein NLA_4070 [Neisseria lactamica ST-640]
 gi|313005214|emb|CBN86647.1| hypothetical protein NLA_4070 [Neisseria lactamica 020-06]
          Length = 252

 Score = 38.5 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/166 (7%), Positives = 45/166 (27%), Gaps = 9/166 (5%)

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           V     + +      E     ++ + ++  E        +      Q     +   + A+
Sbjct: 86  VQNRFKIAEASFYAQEYVRFLERSETVSEDELRAFYERQTRMVKLQQVGFATEGEARQAQ 145

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTT-NPYVTQ 264
           +  L+       ++++ +           +++   L     +     ++ + T +P    
Sbjct: 146 QLLLKGLSFEGLMKRYPNDEQAFD----GFIMAQQLPEPLASQFAGMNRGDVTRDPIRLG 201

Query: 265 KGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
                  + +     D      ++  L       K        +++
Sbjct: 202 GRYYLFKLSEVGKNPDAQPFELVRNQLEQGLKQEKARLKIDALLEE 247


>gi|307708615|ref|ZP_07645079.1| foldase protein PrsA [Streptococcus mitis NCTC 12261]
 gi|307615364|gb|EFN94573.1| foldase protein PrsA [Streptococcus mitis NCTC 12261]
          Length = 312

 Score = 38.5 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 38/313 (12%), Positives = 79/313 (25%), Gaps = 41/313 (13%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K L    + ++         K    +  I     G+VIT+    +++             
Sbjct: 3   KKLLAGAITLLSVATLAACSKGSEGADLISMK--GDVITEHQFYEQVKSNPS-------- 52

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
             A Q L+  T++K   ++ G   D   VN    +  +  G + +               
Sbjct: 53  --AQQVLLNMTIQKVFEKQYGSEVDDKEVNDTIAEEEKQYGENYQRVL-------SQAGM 103

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
             +    Q     +V+          E E+  +  K         +   ++    ++K +
Sbjct: 104 TLETRKAQIRTSKLVELAVK---KAAEAELTDDAYKKAYDEYTPDVTAQIIRLDNEDKAK 160

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLK 251
                 K          +      K +         + G+  +   S   P    +    
Sbjct: 161 EVLEKAKASDADFAQLAKDNSTDEKTKA--------NGGEITFDSASTEVPDQVKKAAFA 212

Query: 252 KSQNNTTNPYVT------QKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEKHE--A 302
              N  ++                + +  K +    I   K  L       K        
Sbjct: 213 LDVNGVSDVISVTGTQAYSSQYYIVKLIKKTEKSSNIDDYKEKLKTVILTQKQNDASFVQ 272

Query: 303 EYVKKLRSNAIIH 315
             + K    A I 
Sbjct: 273 SIIGKELQAANIK 285


>gi|302391506|ref|YP_003827326.1| hypothetical protein Acear_0721 [Acetohalobium arabaticum DSM 5501]
 gi|302203583|gb|ADL12261.1| TPR repeat-containing protein [Acetohalobium arabaticum DSM 5501]
          Length = 404

 Score = 38.5 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 47/143 (32%), Gaps = 9/143 (6%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKING-------ELEKIAVQELIVETLKKQEIEKSGI 95
              +N + I   D  + +   + Q            L+   +Q++I + L  Q+ ++  I
Sbjct: 55  IAVVNDKPIRYQDFQRGLQRFQQQSQRPIGNSQVLALKNRVLQQMIDQELLLQKAKEENI 114

Query: 96  --TFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
                   V        +NTG S ++  + L  +G      K+ L        ++     
Sbjct: 115 TVNISDQEVETQLDNWIKNTGRSRKEIENLLSDRGSSIAQVKKQLKEGMHKQKLINRMVQ 174

Query: 154 LKYGNLEMEIPANKQKMKNITVR 176
                +E+     K   +  T +
Sbjct: 175 QAQDGVEVTEKELKDAYEKSTEK 197


>gi|289167826|ref|YP_003446095.1| peptidylprolyl isomerase [Streptococcus mitis B6]
 gi|288907393|emb|CBJ22230.1| peptidylprolyl isomerase [Streptococcus mitis B6]
          Length = 312

 Score = 38.5 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 36/313 (11%), Positives = 80/313 (25%), Gaps = 41/313 (13%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K L    + ++         K    +  I     G+VIT+    +++        N   +
Sbjct: 3   KKLLAGAITLLSVATLAACSKGSEGADLISMK--GDVITEHQFYEQVKS------NPSAQ 54

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           ++ +   I +  +KQ   +      ++T+     Q+  N           L+        
Sbjct: 55  QVLLNLTIQKVFEKQYGSEVDDKEVNDTIAEEEKQYGENYQRVLSQAGMTLET------- 107

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                  Q     +V+          E E+  +  K         +   ++    ++K +
Sbjct: 108 ----RKAQIRTSKLVELAVK---KAAEAELTDDAYKKAFDEYTPDVTAQIIRLDNEDKAK 160

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLK 251
                 K          +      K +         + G+  +   S   P+   +    
Sbjct: 161 EILEKAKASDADFAQLAKDNSTDEKTKA--------NGGEITFDSASTEVPEQVKKAAFA 212

Query: 252 KSQNNTTNPYVT------QKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEKHE--A 302
              N  ++                + +  K +    I   K  L       K        
Sbjct: 213 LDVNGISDVISVTGTQAYSSQYYIVKLIKKTEKSSNIDDYKEKLKTVILTQKQNDASFVQ 272

Query: 303 EYVKKLRSNAIIH 315
             + K    A I 
Sbjct: 273 SIIGKELQAANIK 285


>gi|262193738|ref|YP_003264947.1| hypothetical protein Hoch_0413 [Haliangium ochraceum DSM 14365]
 gi|262077085|gb|ACY13054.1| hypothetical protein Hoch_0413 [Haliangium ochraceum DSM 14365]
          Length = 549

 Score = 38.5 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/296 (8%), Positives = 71/296 (23%), Gaps = 27/296 (9%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRI--ALLKLQKINGELEKIAVQELIVETLKK 87
                + A       T++G  +T  D+  +   A  ++ +   E      + LI     +
Sbjct: 92  FDVAIAGAPDPDTAGTVDGVAVTMRDLESQSVGAFARIAERIYEARDRGWRWLIERVALE 151

Query: 88  QEIEKSGITFDS---NTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
               ++G+       +                 +D +     +       +    +Q+  
Sbjct: 152 HVARQAGMPLIPYLLSEYAKLPPPTDEQLAGVLQDMAFAEMGEDELLAAGRSVWRLQAWD 211

Query: 145 PD----VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
                 V +    + +  +   I   +       V     + +  +        Q  + +
Sbjct: 212 ARRAELVNQGRAAVPFERVRRRISDPEFAKPETEVARLGGQPITRAEQRVLAGYQAALAQ 271

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP 260
                             L    ++   V + + + +    +       ++         
Sbjct: 272 HEYWRIAKMQFDKYVDRFLLAREAEALAVEVSELEQMERGRMPAVSDAEVRAFIAENPEY 331

Query: 261 YVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
              Q G                             + +      +K+LR+ A I +
Sbjct: 332 KTAQNGF------------------ERARDNVRRLREQGAYESLLKRLRAAADIRF 369


>gi|296127129|ref|YP_003634381.1| hypothetical protein Bmur_2107 [Brachyspira murdochii DSM 12563]
 gi|296018945|gb|ADG72182.1| conserved hypothetical protein [Brachyspira murdochii DSM 12563]
          Length = 484

 Score = 38.5 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/280 (9%), Positives = 77/280 (27%), Gaps = 11/280 (3%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              +    I   D+ K     K   +  ++  I ++           + K+     +   
Sbjct: 204 AAIVQSNEIAVNDLEKYFTDNKTNFVQADISWIMLES----GGVADNLYKTLKDDITLFE 259

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
                +            +          N        Q +   +  N +       ++ 
Sbjct: 260 KSALEKGLNTNNYKLGYITKMQMPSDDFANKIFSDNKGQKLLEPIYANGYYYIVLVNDIR 319

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           IP     +    ++   +   + ++ + +   Q  V K       +  RL  +       
Sbjct: 320 IPEKYTDVNQNVLKNEYLNANINTLLEAEKTKQAEVLKAAAANINNLQRLNGNGYIRYYR 379

Query: 223 ASKIHDVSIGKAQYLLESDLHP-----QFQNLLKKSQNNTTNPYVTQKGVEYIAI--CDK 275
            S+    + G+   +  + +        + ++     N  ++      GV  I +   +K
Sbjct: 380 PSQPFSYNQGRLSTVDGTIIPDSSTEAFYNHVFSLQTNTVSDVIKLDNGVAVIKLISEEK 439

Query: 276 RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
            ++     L +         +I   + E+  +  + A + 
Sbjct: 440 PNMTASYTLNSDNMNAIKRQRINNIQIEWENENIAKARVK 479


>gi|255965590|gb|ACU45098.1| peptidyl-prolyl cis-trans isomerase [Pfiesteria piscicida]
          Length = 190

 Score = 38.5 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/119 (10%), Positives = 30/119 (25%), Gaps = 1/119 (0%)

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
             +  +   + +   L +            +DV +G                    +   
Sbjct: 67  EKKAELIRKKMTGATLEEVAKSTGSSVLTANDVILGNTIMPNVGQEPKVVGTAFALATGK 126

Query: 257 TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           T+       GV  I      +     A  + ++ +    +       Y + L+  A I 
Sbjct: 127 TSKLIDGNSGVFIIRAKSVIEAPAVNAYTSQITQEMQTQQNNAQMRAY-EALKDKATIK 184


>gi|251782838|ref|YP_002997141.1| foldase protein PrsA [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242391468|dbj|BAH81927.1| peptidyl-prolyl cis-trans isomerase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|323127643|gb|ADX24940.1| foldase protein PrsA [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 355

 Score = 38.5 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/303 (9%), Positives = 77/303 (25%), Gaps = 26/303 (8%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
                ++    V  ++       +    ++ G+ I+  D        ++ +      K  
Sbjct: 6   KLIAGIVTLASVMTLTACQSTNDNTKVISMKGDTISVSDFYNETKHTEVSQ------KAM 59

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           +  ++    + Q  +K          N    Q+  +   +    S   +         + 
Sbjct: 60  LNLVVSRVFEAQYGDKVSNKEVEKAYNKTADQYGASFSAALAQSSLTPETY---KKQIRS 116

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
              ++    +  K +   +      E        + I +        +      +  +  
Sbjct: 117 SKLVEYAVRETAKKELTTEAYKKAYETYTPTMAAQVIALDSEETAKSVLEELKAEGADFA 176

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
            + K    A + ++    D       A  +   S      L E D+              
Sbjct: 177 AIAKEKTTAADKKIAYKFDSGATSLPADVVKAASG-----LKEGDMSEVIS--------- 222

Query: 257 TTNPYVTQKGVEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEK--HEAEYVKKLRSNAI 313
             +P   Q     + +  K +   +    K  L A     K      + + + K    A 
Sbjct: 223 VLDPATYQNKFYIVKVTKKAEKKADWKVYKKRLKAIILAEKTRDMNFQNKIIAKALDKAN 282

Query: 314 IHY 316
           +  
Sbjct: 283 VKI 285


>gi|15902928|ref|NP_358478.1| foldase protein PrsA [Streptococcus pneumoniae R6]
 gi|116517083|ref|YP_816350.1| foldase protein PrsA [Streptococcus pneumoniae D39]
 gi|148984724|ref|ZP_01817992.1| protease maturation protein, putative [Streptococcus pneumoniae
           SP3-BS71]
 gi|148988426|ref|ZP_01819873.1| protease maturation protein, putative [Streptococcus pneumoniae
           SP6-BS73]
 gi|148992883|ref|ZP_01822502.1| protease maturation protein, putative [Streptococcus pneumoniae
           SP9-BS68]
 gi|148998582|ref|ZP_01826022.1| protease maturation protein, putative [Streptococcus pneumoniae
           SP11-BS70]
 gi|149002533|ref|ZP_01827467.1| protease maturation protein, putative [Streptococcus pneumoniae
           SP14-BS69]
 gi|149006340|ref|ZP_01830052.1| protease maturation protein, putative [Streptococcus pneumoniae
           SP18-BS74]
 gi|149019573|ref|ZP_01834892.1| protease maturation protein, putative [Streptococcus pneumoniae
           SP23-BS72]
 gi|168491071|ref|ZP_02715214.1| foldase protein PrsA [Streptococcus pneumoniae CDC0288-04]
 gi|169834173|ref|YP_001694426.1| foldase protein PrsA [Streptococcus pneumoniae Hungary19A-6]
 gi|221231743|ref|YP_002510895.1| foldase protein PrsA precursor [Streptococcus pneumoniae ATCC
           700669]
 gi|225854485|ref|YP_002735997.1| foldase protein PrsA [Streptococcus pneumoniae JJA]
 gi|225861132|ref|YP_002742641.1| foldase protein PrsA [Streptococcus pneumoniae Taiwan19F-14]
 gi|237821321|ref|ZP_04597166.1| foldase protein PrsA [Streptococcus pneumoniae CCRI 1974M2]
 gi|298229543|ref|ZP_06963224.1| foldase protein PrsA [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254488|ref|ZP_06978074.1| foldase protein PrsA [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|307127469|ref|YP_003879500.1| foldase protein PrsA [Streptococcus pneumoniae 670-6B]
 gi|46396912|sp|Q8DQ24|PRSA_STRR6 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|122278764|sp|Q04KU8|PRSA_STRP2 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|226712007|sp|B1IBE1|PRSA_STRPI RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|254783414|sp|B8ZPD9|PRSA_STRPJ RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|254783415|sp|C1CDX6|PRSA_STRZJ RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|254783417|sp|C1CRR9|PRSA_STRZT RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|15458489|gb|AAK99688.1| Proteinase maturation protein [Streptococcus pneumoniae R6]
 gi|116077659|gb|ABJ55379.1| protease maturation protein, putative [Streptococcus pneumoniae
           D39]
 gi|147755580|gb|EDK62627.1| protease maturation protein, putative [Streptococcus pneumoniae
           SP11-BS70]
 gi|147759470|gb|EDK66462.1| protease maturation protein, putative [Streptococcus pneumoniae
           SP14-BS69]
 gi|147762117|gb|EDK69079.1| protease maturation protein, putative [Streptococcus pneumoniae
           SP18-BS74]
 gi|147923115|gb|EDK74230.1| protease maturation protein, putative [Streptococcus pneumoniae
           SP3-BS71]
 gi|147926107|gb|EDK77181.1| protease maturation protein, putative [Streptococcus pneumoniae
           SP6-BS73]
 gi|147928335|gb|EDK79351.1| protease maturation protein, putative [Streptococcus pneumoniae
           SP9-BS68]
 gi|147930948|gb|EDK81928.1| protease maturation protein, putative [Streptococcus pneumoniae
           SP23-BS72]
 gi|168996675|gb|ACA37287.1| foldase protein PrsA [Streptococcus pneumoniae Hungary19A-6]
 gi|183574699|gb|EDT95227.1| foldase protein PrsA [Streptococcus pneumoniae CDC0288-04]
 gi|220674203|emb|CAR68731.1| foldase protein PrsA precursor [Streptococcus pneumoniae ATCC
           700669]
 gi|225723485|gb|ACO19338.1| foldase protein PrsA [Streptococcus pneumoniae JJA]
 gi|225726693|gb|ACO22544.1| foldase protein PrsA [Streptococcus pneumoniae Taiwan19F-14]
 gi|301794118|emb|CBW36524.1| foldase protein PrsA precursor [Streptococcus pneumoniae INV104]
 gi|301799956|emb|CBW32539.1| foldase protein PrsA precursor [Streptococcus pneumoniae OXC141]
 gi|306484531|gb|ADM91400.1| foldase protein PrsA [Streptococcus pneumoniae 670-6B]
 gi|332076253|gb|EGI86719.1| PPIC-type PPIASE domain protein [Streptococcus pneumoniae GA41301]
 gi|332204982|gb|EGJ19047.1| PPIC-type PPIASE domain protein [Streptococcus pneumoniae GA47901]
          Length = 313

 Score = 38.5 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 35/313 (11%), Positives = 79/313 (25%), Gaps = 41/313 (13%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K L    + ++         K    +  I     G+VIT+    +++        N   +
Sbjct: 3   KKLLAGAITLLSVATLAACSKGSEGADLISMK--GDVITEHQFYEQVK------NNPSAQ 54

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           ++ +   I +  +KQ   +       +T+     Q+  N           L+        
Sbjct: 55  QVLLNMTIQKVFEKQYGSELDDKEVDDTIAEEKKQYGENYQRVLSQAGMTLET------- 107

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                  Q     +V+          E E+     K         +   ++    ++K +
Sbjct: 108 ----RKAQIRTSKLVELAVK---KVAEAELTDEAYKKAFDEYTPDVTAQIIRLNNEDKAK 160

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLK 251
                 K          +      K ++        + G+  +   S   P+   +    
Sbjct: 161 EVLEKAKAEGADFAQLAKDNSTDEKTKE--------NGGEITFDSASTEVPEQVKKAAFA 212

Query: 252 KSQNNTTNPYVT------QKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEK--HEA 302
              +  ++                + +  K +    I   K  L       K        
Sbjct: 213 LDVDGVSDVITATGTQAYSSQYYIVKLTKKTEKSSNIDDYKEKLKTVILTQKQNDSTFVQ 272

Query: 303 EYVKKLRSNAIIH 315
             + K    A I 
Sbjct: 273 SIIGKELQAANIK 285


>gi|225856639|ref|YP_002738150.1| foldase protein PrsA [Streptococcus pneumoniae P1031]
 gi|254783416|sp|C1CK62|PRSA_STRZP RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|225725282|gb|ACO21134.1| foldase protein PrsA [Streptococcus pneumoniae P1031]
          Length = 313

 Score = 38.5 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 34/313 (10%), Positives = 79/313 (25%), Gaps = 41/313 (13%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K L    + ++         K    +  I     G++IT+    +++        N   +
Sbjct: 3   KKLLAGAITLLSVATLAACSKGSEGADLISMK--GDIITEHQFYEQVK------NNPSAQ 54

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           ++ +   I +  +KQ   +       +T+     Q+  N           L+        
Sbjct: 55  QVLLNMTIQKVFEKQYGSELDDKEVDDTIAEEKKQYGENYQRVLSQAGMTLET------- 107

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                  Q     +V+          E E+     K         +   ++    ++K +
Sbjct: 108 ----RKAQIRTSKLVELAVK---KVAEAELTDEAYKKAFDEYTPDVTAQIIRLNNEDKAK 160

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLK 251
                 K          +      K ++        + G+  +   S   P+   +    
Sbjct: 161 EVLEKAKAEGADFAQLAKDNSTDEKTKE--------NGGEITFDSASTEVPEQVKKAAFA 212

Query: 252 KSQNNTTNPYVT------QKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEK--HEA 302
              +  ++                + +  K +    I   K  L       K        
Sbjct: 213 LDVDGVSDVITATGTQAYSSQYYIVKLTKKTEKSSNIDDYKEKLKTVILTQKQNDSTFVQ 272

Query: 303 EYVKKLRSNAIIH 315
             + K    A I 
Sbjct: 273 SIIGKELQAANIK 285


>gi|254779571|ref|YP_003057677.1| putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D)
           [Helicobacter pylori B38]
 gi|254001483|emb|CAX29488.1| Putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D)
           [Helicobacter pylori B38]
          Length = 487

 Score = 38.5 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 33/313 (10%), Positives = 86/313 (27%), Gaps = 20/313 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +    +  I   +      S+++ S     +    I+  ++++  
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEY 60

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             LK        +    +EL  + +K   +EKS    DS          A + GL A   
Sbjct: 61  RRLKDAYAESIPD---FKELTEDQIKAMHLEKSA--LDSLINQALLRNLALDLGLGATKQ 115

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
               + +             +     + ++ +  K+    +E     QK+  +  +    
Sbjct: 116 EVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVEKLLILQKISALFPKTTTP 175

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
                     KLQ++  +     +  +       + K     +K   K          + 
Sbjct: 176 LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFD 235

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
              +     +      +N  +             +  +  L    +++  +    +  K 
Sbjct: 236 ASLEKPDLKELEEYYHKNKVS------------YLDKEGKLQDFKSVQEQVKHDLSMQKA 283

Query: 298 EKHEAEYVKKLRS 310
            +        L+ 
Sbjct: 284 NEKALRSYVALKK 296


>gi|169347183|ref|ZP_02866124.1| hypothetical protein CPC_A0055 [Clostridium perfringens C str.
          JGS1495]
 gi|169296683|gb|EDS78813.1| hypothetical protein CPC_A0055 [Clostridium perfringens C str.
          JGS1495]
          Length = 66

 Score = 38.5 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 13 IKLLTTYFVLIIFCI-VPIVSYKSWAMSSRIRTTINGEVITDGDISK 58
          +K +  +F+ +     +  ++  +   + ++   +NG  IT+ DI +
Sbjct: 1  MKKIIGFFLALTVIFQLSAINVFATESNDKVIAIVNGIEITEKDIDE 47


>gi|154175271|ref|YP_001408420.1| WbnF [Campylobacter curvus 525.92]
 gi|112802934|gb|EAU00278.1| WbnF [Campylobacter curvus 525.92]
          Length = 485

 Score = 38.5 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/243 (7%), Positives = 52/243 (21%), Gaps = 11/243 (4%)

Query: 63  LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
           L+  +IN    +  ++  I+       +       D   +        + +    E   +
Sbjct: 141 LRRARINPNDYEKNLKTAILLDKLYYALNLPATKKDVEMMMASLFMQDKLSIEMIEANEN 200

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
            +           +      +   +          +            +      Y    
Sbjct: 201 EIKFNEDEIKELWESNKNNYMTKTLY-------VIDTLYIESKKDDINQTALSAYYNENK 253

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
             +   D+K+     V++ +               K           +      L E + 
Sbjct: 254 EKYKNSDDKIMPFDEVKEEVAKDYNIEQSKTNALEKYIAVKKGELATNGSM--SLNEDNA 311

Query: 243 HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG--EIALKAYLSAQNTPTKIEKH 300
                 +      +   P+V   G   + I              K  +       K+++ 
Sbjct: 312 TFSIDEIRGAKVGDVIKPFVYDNGYLIVKIKSTTPPQPMSYEQAKEQILEIYKEQKLKEL 371

Query: 301 EAE 303
              
Sbjct: 372 VEN 374


>gi|14582889|gb|AAK69701.1|AF356511_1 putative peptidyl-prolyl cis-trans isomerase D [Anaplasma
           phagocytophilum]
          Length = 575

 Score = 38.5 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/166 (9%), Positives = 49/166 (29%), Gaps = 9/166 (5%)

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFV 198
             + +  +       E          ++          + +   +  S   ++      V
Sbjct: 219 QKLFEEQYKNSLNFPEYRSADYIIMAEDDLLADVIVSDQEVDVEIKNSELHDQRDVLNLV 278

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNT 257
                +AE +     +  +  E  +   + +       + +  L    +N++   ++   
Sbjct: 279 FTDKNEAELAYKAYQEGKSFEELVSDAGYTIEDIALNNISKDVLPVGVRNVVFALNEGEV 338

Query: 258 TNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHE 301
           +  + +  G   + +  K ++  E    LK  +S+     K  +  
Sbjct: 339 SEMFRSVVGWHIMKVIRKHEITKEDLEKLKEKISSNIRRQKAGELL 384


>gi|317968435|ref|ZP_07969825.1| hypothetical protein SCB02_02756 [Synechococcus sp. CB0205]
          Length = 165

 Score = 38.5 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/109 (9%), Positives = 33/109 (30%), Gaps = 1/109 (0%)

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ-NNTTN 259
             +       R     +    F+      + G       +  HP  ++ L+ +       
Sbjct: 46  ANELYLRLSGREATFADLASDFSEGHEKKTCGIVGPAPLAKSHPHLRDQLRSADVGVVNP 105

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
           P   +     + +        + +++  +  +     +++  AE + +L
Sbjct: 106 PIAVEDWFLIVRLESTIPAILDDSMRQLMEHELFEADVQQQAAELLGQL 154


>gi|171914553|ref|ZP_02930023.1| hypothetical protein VspiD_25280 [Verrucomicrobium spinosum DSM
           4136]
          Length = 518

 Score = 38.5 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/282 (9%), Positives = 78/282 (27%), Gaps = 24/282 (8%)

Query: 47  NGEVITDGDISKRIALLKL-QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           NG   T+ +  +    L + Q  +G  +    ++           +        + + + 
Sbjct: 117 NGVQATNEEAREAFRKLPIFQNKDGNFDGNVAEQFQNNIGALGLRDTDVFDVLRDWIGFK 176

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
            +           +             +   +  +++     + +DF       + EI  
Sbjct: 177 RLHEIVAGNAVLNN-------NVSKQLYASTFQTVKAASIPFITDDFKKDAKPTDEEIAK 229

Query: 166 NKQKMKNITV--REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
             ++ K       +  +  VLF+ PD +  N     K   +                   
Sbjct: 230 YYEEKKEAFKTAPKRAVSYVLFAKPDVEKLNAEDTVKARNEFAARVNDFGVAAIAPGAKL 289

Query: 224 SKIHDVSIGKAQYLLESDL--HPQFQNLLKKSQNNT----------TNPYVTQKGVEYIA 271
             +   +  + +      +   P+         +            ++P    KG  + +
Sbjct: 290 EDVAKTAKVELKTEPLFTMEAPPEALKEEPGLVSEIFRIDPQNRPVSDPVEGAKGYYFFS 349

Query: 272 ICDKRDLGGEI--ALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           +  + +   +    +K  ++ Q T  K ++   +   + R  
Sbjct: 350 VTQEEEPKQQELAEVKEKVAEQLTSQKAQELMTKAASEARKK 391


>gi|225075435|ref|ZP_03718634.1| hypothetical protein NEIFLAOT_00440 [Neisseria flavescens
           NRL30031/H210]
 gi|224953253|gb|EEG34462.1| hypothetical protein NEIFLAOT_00440 [Neisseria flavescens
           NRL30031/H210]
          Length = 254

 Score = 38.1 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/225 (9%), Positives = 51/225 (22%), Gaps = 6/225 (2%)

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
             E      DS                +  D  +            +             
Sbjct: 25  APEIDPARIDSMVAEVLRQADQHPNQTAKPDGQAIRKDVVTRLQTLEVLKNEAIKAGLDK 84

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIR-TVLFSIPDNKLQNQGFVQKRIKDAEE 207
             +   ++ N+E E  AN+                  F     ++     V     +   
Sbjct: 85  DAEVQNQFKNVEAEFYANQYAAYLERQTAVDDAELRRFYDQQTRIIKLQQVSFASAEEVR 144

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTT-NPYVTQK 265
           +   L       E+   +  +       ++    L PQ        ++ + T  P   + 
Sbjct: 145 AAQELLLKGLSFEELMKRYPNPEQEFDGFISPQQLPPQLATAFADMNRGDVTHEPIQMEN 204

Query: 266 GVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
                 +       +      ++  ++      K+E      +K+
Sbjct: 205 RFYLFKLSAVERNPNAEPFELVRNQIAQAVKRQKVENQIERILKE 249


>gi|317012785|gb|ADU83393.1| putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D)
           [Helicobacter pylori Lithuania75]
          Length = 487

 Score = 38.1 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 32/313 (10%), Positives = 86/313 (27%), Gaps = 20/313 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +    +  I   +      ++++ S     +    I+  ++++  
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYNFSLDSDSAAKVGQIKISQEELAQEY 60

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             LK        +    +EL  + +K   +EKS    DS          A + GL A   
Sbjct: 61  RRLKDAYAESIPD---FKELTEDQIKAMHLEKSA--LDSLINQALLRNLALDLGLGATKQ 115

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
               + +             +     + ++ +  K+    +E     QK+  +  +    
Sbjct: 116 EVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP 175

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
                     KLQ++  +     +  +       + K     +K   K          + 
Sbjct: 176 LEQSSLSLWAKLQDRLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFD 235

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
              +     +      +N  +             +  +  L    +++  +    +  K 
Sbjct: 236 ASLEKPDLKELEEYYHKNKVS------------YLDKEGKLQDFKSVQEQVKHDLSMQKA 283

Query: 298 EKHEAEYVKKLRS 310
            +        L+ 
Sbjct: 284 NEKALRSYVALKK 296


>gi|313498575|gb|ADR59941.1| SurA domain-containing protein [Pseudomonas putida BIRD-1]
          Length = 213

 Score = 38.1 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 47/163 (28%), Gaps = 13/163 (7%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISK-----------RIALLKLQKINGEL 72
           I  +  ++     + +      +NG  I    + +            +  ++   +   L
Sbjct: 3   IVWLCLLLVLTRASWADVPAARVNGVEIGLMRLERYFSEYLDAQGRAVTSIRNPGLYKRL 62

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
              A+ ELI + L  QE ++ GI      V+    +     G  A       +  G    
Sbjct: 63  RDQALDELIDKELLWQEAQRQGIAVSDEQVSAQVGEIEAAFGSPALFERRLAEA-GFDRA 121

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
            + +Y   +      V           + E+ A     +    
Sbjct: 122 QYTEYTRHEMAAQQ-VYALLSAVDAPSQGEVEAFYDANQERLQ 163


>gi|206890921|ref|YP_002247897.1| hypothetical protein THEYE_A0043 [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742859|gb|ACI21916.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 196

 Score = 38.1 bits (86), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 49/158 (31%), Gaps = 13/158 (8%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVIT------DGD--- 55
           +  +L    K     F L+I   V                 ++G+ I+      + +   
Sbjct: 1   MIKTLRKNAKYFYFLFFLVIITFVFWGVGTVDKPKVEYVADVDGQKISAERFWRNYEEIR 60

Query: 56  -ISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF---VQHAR 111
              + +   K  ++   L++  +++LI E +     +K  I      V        +  R
Sbjct: 61  RFYREVFKDKAAEMEQGLKEKVLEDLINEEILLWLAKKYEIEATDKEVQDAIVNDPRFMR 120

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
           N     + +   L    +    ++  L  +      ++
Sbjct: 121 NGIFQRDIYFQILKLNRLNPAQYEASLKREITIGKTIQ 158


>gi|29840067|ref|NP_829173.1| hypothetical protein CCA00302 [Chlamydophila caviae GPIC]
 gi|29834415|gb|AAP05051.1| conserved hypothetical protein [Chlamydophila caviae GPIC]
          Length = 360

 Score = 38.1 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 92/297 (30%), Gaps = 24/297 (8%)

Query: 34  KSWAMSSRIRTTIN-GEVITDGDISKRIALLKLQKINGELEKI-------------AVQE 79
              A+  R+   I+   V+T  D+ +++ LL        ++                ++ 
Sbjct: 46  AGIAIHDRVLFKIDEDNVVTTLDVIQKLNLLFASSYPQLMDSYPARSQYYTAMWPVVLES 105

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
           +I E L   + +   I  DS TVN      A      +  +  F        N   + L 
Sbjct: 106 VIDEFLMVADAKTKKIQVDSTTVNEEIE--AMFGRDLSPLYVHFDMTPEDVFNVVNRTLI 163

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQ 199
            Q +   +V++  MLK    ++      Q  ++          V+      +  +     
Sbjct: 164 AQRVMGMMVRSKVMLKVTPGKIR-EHYNQLAEDAANTTVWKYRVVTIKAATESLSSQIAD 222

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL---LKKSQNN 256
           K      E++    +  + L          S  +     + +L    +     +   Q  
Sbjct: 223 KVCARLNETQSWNKERLSALTLSQGGQFVCS--EEFTRNDKELSEAHKMELSSVNYPQTI 280

Query: 257 TTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
            + P   + G +   + DK  +       ++  +            E++Y  KLR+ 
Sbjct: 281 CSLPKAHKSGHKLYVLLDKSAMAMQPLEEMETQIKQTLFMNYAGTIESQYKMKLRTR 337


>gi|331216455|ref|XP_003320907.1| hypothetical protein PGTG_02929 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309299897|gb|EFP76488.1| hypothetical protein PGTG_02929 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 397

 Score = 38.1 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 9/96 (9%)

Query: 223 ASKIHDVSIGKAQY--LLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
           A K    + G + Y   L S    Q            +     Q G   + +  +++L  
Sbjct: 271 AIKHSKKNGGTSGYQLRLNSQGPIQLIGQHDNDSGVISA---NQAGSHVVKLKSRKELQA 327

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKKLRSN--AII 314
           E         + +     K + E  KKLR    A I
Sbjct: 328 EKREHKATERKISAEM--KAQEELRKKLRKEQVARI 361


>gi|317180180|dbj|BAJ57966.1| hypothetical protein HPF32_0384 [Helicobacter pylori F32]
          Length = 487

 Score = 38.1 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 33/313 (10%), Positives = 85/313 (27%), Gaps = 20/313 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +    +  I   +      S+++ S     +    I+  ++++  
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSGSAAKVGQIKISQEELAQEY 60

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             LK             +EL  + +K   +EKS    DS          A + GL A   
Sbjct: 61  RRLKDAYAESIPN---FKELTEDQIKAIHLEKSA--LDSLINQALLRNLALDLGLGATKQ 115

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
               + +             +     + ++ +  K+    +E     QK+  +  +    
Sbjct: 116 EVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVEKLLILQKISTLFPKTTTP 175

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
                     KLQ++  +     +  +       + K     +K   K          + 
Sbjct: 176 LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFD 235

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
              +     +      +N  +             +  +  L    +++  +    +  K 
Sbjct: 236 ASLEKPDLKELEEYYHKNKVS------------YLDKEGKLQDFKSVQEQVKHDLSMQKA 283

Query: 298 EKHEAEYVKKLRS 310
            +        L+ 
Sbjct: 284 NEKALRSYVALKK 296


>gi|205355536|ref|ZP_03222307.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205346770|gb|EDZ33402.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 496

 Score = 38.1 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/217 (10%), Positives = 59/217 (27%), Gaps = 15/217 (6%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL--------- 63
           + +  +    +    +   +Y      S    T+  E I   +   R   +         
Sbjct: 14  VTIWVSTIAFVGAGFLGWGAYDFNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQISN 73

Query: 64  ----KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                       ++ IA+  L+ + L     +  GI  + N +             + + 
Sbjct: 74  GALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANTREFQDPTGDF 133

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
             +   +    +N   +    Q     +       +  N+  +    K    +  +++ L
Sbjct: 134 NKTIYYELLNANNLTPKDYETQLANEVITDKL--NQIFNIPSKDEELKMLASSYFMQDAL 191

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
               +     N   N+  ++K   + +E         
Sbjct: 192 SIAKIDYDKKNIKINEEDLKKLWNEHKEDYKTKKIYE 228


>gi|317177768|dbj|BAJ55557.1| hypothetical protein HPF16_0960 [Helicobacter pylori F16]
          Length = 487

 Score = 38.1 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 35/317 (11%), Positives = 89/317 (28%), Gaps = 21/317 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +    +  I   +      S+++ S     +    I+  ++++  
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEY 60

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             LK             +EL  + +K   +EKS    DS          A + GL A   
Sbjct: 61  RRLKDAYAESIPN---FKELTEDQIKAMHLEKSA--LDSLINQALLRNLALDLGLGATKQ 115

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
               + +             +     + ++ +  K+    +E     QK+  +  +    
Sbjct: 116 EVAKEIKKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP 175

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
                     KLQ++  +     +  +       + K     +K   K          + 
Sbjct: 176 LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFD 235

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
              +     +      +N  +             +  +  L    +++  +    +  K 
Sbjct: 236 ASLEKPDLKELEEYYHKNKVS------------YLDKEGKLQDFKSVQEQVKHDLSMQKA 283

Query: 298 EK-HEAEYVKKLRSNAI 313
            +     Y+   ++NA 
Sbjct: 284 NEKALRSYIALKKANAQ 300


>gi|198275842|ref|ZP_03208373.1| hypothetical protein BACPLE_02017 [Bacteroides plebeius DSM 17135]
 gi|198271471|gb|EDY95741.1| hypothetical protein BACPLE_02017 [Bacteroides plebeius DSM 17135]
          Length = 712

 Score = 38.1 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 1/78 (1%)

Query: 237 LLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK 296
           +  S          K + N  + P     GV  I +  K     +   K    A  T   
Sbjct: 628 VTRSSEPVIGAVAAKTAANKVSAPIKGNGGVYMIQVYAKEKGSEKFDAKQE-EATLTNMA 686

Query: 297 IEKHEAEYVKKLRSNAII 314
           +     + +  L   A +
Sbjct: 687 VRIAGNQLINDLYQKAKV 704


>gi|315926808|gb|EFV06182.1| Putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 496

 Score = 38.1 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/217 (10%), Positives = 59/217 (27%), Gaps = 15/217 (6%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL--------- 63
           + +  +    +    +   +Y      S    T+  E I   +   R   +         
Sbjct: 14  VTIWVSTIAFVGAGFLGWGAYDFNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQISN 73

Query: 64  ----KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                       ++ IA+  L+ + L     +  GI  + N +             + + 
Sbjct: 74  GALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANTREFQDPTGDF 133

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
             +   +    +N   +    Q     +       +  N+  +    K    +  +++ L
Sbjct: 134 NKTIYYELLNANNLTPKDYETQLANEVIADKL--NQIFNIPSKDEELKMLASSYFMQDAL 191

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
               +     N   N+  ++K   + +E         
Sbjct: 192 SIAKIDYDKKNIKINEEDLKKLWNEHKEDYKTKKIYE 228


>gi|307151228|ref|YP_003886612.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cyanothece sp. PCC
           7822]
 gi|306981456|gb|ADN13337.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cyanothece sp. PCC
           7822]
          Length = 247

 Score = 38.1 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 34/267 (12%), Positives = 88/267 (32%), Gaps = 36/267 (13%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           IT  DI K + +              +++++   + ++  +K+GI  ++  +     +  
Sbjct: 5   ITPSDIFKAVQISCQI-------PEFIEQIVTRKIIEEAAKKAGIKIETEELQKAADEFR 57

Query: 111 RNTGLSAEDFSS-FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
               L   + +  +L+K  +  + F++ + I  I   +V + F  K         A   +
Sbjct: 58  LGNQLQNAEDTWKWLEKYSLSLDSFEELVYINLISNKLVNHLFGDKI-------DAYFFQ 110

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
            +       +   VL        +++    +     +E  +   +  ++           
Sbjct: 111 NQLDYGGVVMYEVVL--------EDKDLALELFYGIQEGEMSFYEVAHQYIAEQELRRKC 162

Query: 230 SIGKAQYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
             G    +   +L P+    +   +      P +T KGV  I + +         +K  L
Sbjct: 163 --GYLGMVNRKNLKPEISAVVFAANPPQVLKPIITSKGVHLILVEEI--------VKPEL 212

Query: 289 SAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +             +++K+    A + 
Sbjct: 213 NQNLARKIAADLFTDWLKE--QIAQVE 237


>gi|217033935|ref|ZP_03439358.1| hypothetical protein HP9810_883g5 [Helicobacter pylori 98-10]
 gi|216943568|gb|EEC23016.1| hypothetical protein HP9810_883g5 [Helicobacter pylori 98-10]
          Length = 487

 Score = 38.1 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 35/317 (11%), Positives = 89/317 (28%), Gaps = 21/317 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +    +  I   +      S+++ S     +    I+  ++++  
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSGSAAKVGQIKISQEELAQEY 60

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             LK             +EL  + +K   +EKS    DS          A + GL A   
Sbjct: 61  RRLKDAYAESIPN---FKELTEDQIKAMHLEKSA--LDSLINQALLRNLALDLGLGATKQ 115

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
               + +             +     + ++ +  K+    +E     QK+  +  +    
Sbjct: 116 EVAKEIKKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP 175

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
                     KLQ++  +     +  +       + K     +K   K          + 
Sbjct: 176 LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFD 235

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
              +     +      +N  +             +  +  L    +++  +    +  K 
Sbjct: 236 ASLEKPDLKELEEYYHKNKVS------------YLDKEGKLQDFKSVQEQVKHDLSMQKA 283

Query: 298 EK-HEAEYVKKLRSNAI 313
            +     Y+   ++NA 
Sbjct: 284 NEKALRSYIALKKANAQ 300


>gi|17229421|ref|NP_485969.1| hypothetical protein alr1929 [Nostoc sp. PCC 7120]
 gi|17131019|dbj|BAB73628.1| alr1929 [Nostoc sp. PCC 7120]
          Length = 282

 Score = 38.1 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/242 (6%), Positives = 58/242 (23%), Gaps = 2/242 (0%)

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
                 +  K++V+++I       ++        +  +     +         E   S  
Sbjct: 21  ANINMEKFLKLSVEDIITHLKVSFQMPSILEAIATQKIIADTAEKVGIELSVEELQQSAD 80

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
             +                   +  +DF     +  + +   +    +     +    + 
Sbjct: 81  SMRFANRLLKADDTWNWLQKHYLTIDDFEEVAKSNLLHMKLAEHLFADKVEPFFYAHKID 140

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDL- 242
           ++               ++     +           ++        + G       S+  
Sbjct: 141 YTGAATYEVILDDEDLALELFYALQEGEISFQEIARQYIQSPETRRAGGYQGIRYRSEFR 200

Query: 243 HPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEA 302
                 +   +      P +T KGV  IA+ +      + + +  +        +++   
Sbjct: 201 PEIAAAVFAATPPQLLKPIITPKGVHIIAVEEIITPELDESRRVQILKDFFTHWLQQQIT 260

Query: 303 EY 304
             
Sbjct: 261 NL 262


>gi|86149807|ref|ZP_01068036.1| peptidyl-prolyl cis-trans isomerase D, homolog [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|88596914|ref|ZP_01100150.1| putative peptidyl-prolyl cis-trans isomerase D homolog
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218562333|ref|YP_002344112.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|85839625|gb|EAQ56885.1| peptidyl-prolyl cis-trans isomerase D, homolog [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|88190603|gb|EAQ94576.1| putative peptidyl-prolyl cis-trans isomerase D homolog
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112360039|emb|CAL34831.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|284925950|gb|ADC28302.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315929133|gb|EFV08360.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 496

 Score = 38.1 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/217 (10%), Positives = 59/217 (27%), Gaps = 15/217 (6%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL--------- 63
           + +  +    +    +   +Y      S    T+  E I   +   R   +         
Sbjct: 14  VTIWVSTIAFVGAGFLGWGAYDFNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQISN 73

Query: 64  ----KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                       ++ IA+  L+ + L     +  GI  + N +             + + 
Sbjct: 74  GALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENQILQKLANTREFQDPTGDF 133

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
             +   +    +N   +    Q     +       +  N+  +    K    +  +++ L
Sbjct: 134 NKTIYYELLNANNLAPKDYETQLANEVITDKL--NQIFNIPSKDEELKMLASSYFMQDAL 191

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
               +     N   N+  ++K   + +E         
Sbjct: 192 SIAKIDYDKKNIKINEEDLKKLWNEHKEDYKTKKIYE 228


>gi|83649456|ref|YP_437891.1| hypothetical protein HCH_06846 [Hahella chejuensis KCTC 2396]
 gi|83637499|gb|ABC33466.1| conserved hypothetical protein [Hahella chejuensis KCTC 2396]
          Length = 415

 Score = 38.1 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/289 (8%), Positives = 79/289 (27%), Gaps = 19/289 (6%)

Query: 43  RTTINGEVITDGDI-----SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITF 97
             TI  + I    +      K  +L+  +    + E + +  L V   +  + +K+ +  
Sbjct: 127 LATIAAKSILGYQLTPAQREKAASLVLARMAFPDQEDVTLTLLEVYEGQSIQGKKALMEG 186

Query: 98  DSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND--FMLK 155
           D   +    +   ++        S     +    +  ++ +     +P ++         
Sbjct: 187 DVKALGMEVLSWKQHQLRLW-WLSHEGGVEVDAIDDLQRTIKAHYFYPKILNALGVVKRN 245

Query: 156 YGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV--QKRIKDAEESRLRLP 213
           +G+    I   +Q         Y      F               +   + A +  ++  
Sbjct: 246 HGDNPGLIRFREQVSAVQINSYYQRHQEDFRFLAKVKPRGAIYGDEAAARLARQQLMQGA 305

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHP---QFQNLLKKSQNNTTNPYVTQKG-VEY 269
              +  +  +  +     G+  +L +  + P                +    +  G    
Sbjct: 306 SWADL-KTPSRPVSWPLDGE-GWLRKEAVKPTDWLASLAFATPPGEVSEVIRSPTGDWVI 363

Query: 270 IAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           + +  +           ++   +            +E + +LR  A + 
Sbjct: 364 LQVSQREYGYYPPDSETVRYLATDVIAIQLAVTAYSELINQLRRQANLQ 412


>gi|57236997|ref|YP_178798.1| peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter
           jejuni RM1221]
 gi|57165801|gb|AAW34580.1| peptidyl-prolyl cis-trans isomerase D, homolog [Campylobacter
           jejuni RM1221]
 gi|315058157|gb|ADT72486.1| Peptidyl-prolyl cis-trans isomerase ppiD [Campylobacter jejuni
           subsp. jejuni S3]
          Length = 496

 Score = 38.1 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/217 (10%), Positives = 59/217 (27%), Gaps = 15/217 (6%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL--------- 63
           + +  +    +    +   +Y      S    T+  E I   +   R   +         
Sbjct: 14  VTIWVSTIAFVGAGFLGWGAYDFNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQISN 73

Query: 64  ----KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                       ++ IA+  L+ + L     +  GI  + N +             + + 
Sbjct: 74  GALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANTREFQDPTGDF 133

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
             +   +    +N   +    Q     +       +  N+  +    K    +  +++ L
Sbjct: 134 NKTIYYELLNANNLAPKDYETQLANEVITDKL--NQIFNIPSKDEELKMLASSYFMQDAL 191

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
               +     N   N+  ++K   + +E         
Sbjct: 192 SIAKIDYDKKNIKINEEDLKKLWNEHKEDYKTKKIYE 228


>gi|315586916|gb|ADU41297.1| peptidyl-prolyl cis-trans isomerase [Helicobacter pylori 35A]
          Length = 517

 Score = 38.1 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 33/313 (10%), Positives = 85/313 (27%), Gaps = 20/313 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +    +  I   +      S+++ S     +    I+  ++++  
Sbjct: 31  MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSGSAAKVGQIKISQEELAQEY 90

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             LK             +EL  + +K   +EKS    DS          A + GL A   
Sbjct: 91  RRLKDAYAESIPN---FKELTEDQIKAMHLEKSA--LDSLINQALLRNLALDLGLGATKQ 145

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
               + +             +     + ++ +  K+    +E     QK+  +  +    
Sbjct: 146 EVAKEIKKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP 205

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
                     KLQ++  +     +  +       + K     +K   K          + 
Sbjct: 206 LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFD 265

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
              +     +      +N  +             +  +  L    +++  +    +  K 
Sbjct: 266 ASLEKPDLKELEEYYHKNKVS------------YLDKEGKLQDFKSVQEQVKHDLSMQKA 313

Query: 298 EKHEAEYVKKLRS 310
            +        L+ 
Sbjct: 314 NEKALRSYVALKK 326


>gi|294083766|ref|YP_003550523.1| Parvulin-like peptidyl-prolyl isomerase [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292663338|gb|ADE38439.1| Parvulin-like peptidyl-prolyl isomerase [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 620

 Score = 38.1 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/151 (9%), Positives = 33/151 (21%), Gaps = 18/151 (11%)

Query: 152 FMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
                   E  I        +                D K  N+   +            
Sbjct: 238 IEADVDISEDMIKDAFGTRIDEFSTPETRVVRQMVFEDAKKANEARAR------------ 285

Query: 212 LPKDCNKLEKFASKIHDVSIGK--AQYLLESDLHPQFQNLLKKSQ-NNTTNPYVTQKGVE 268
                      A+ + + +        +    L     + +  +  N  T P  T  G  
Sbjct: 286 -VDQGEDFNAVAADMLNWTDTDVMLGTVTRDGLDGAIADAVFDASVNVVTGPVETLFGQH 344

Query: 269 YIAICDKRDLG--GEIALKAYLSAQNTPTKI 297
            + + D  + G      ++  ++      + 
Sbjct: 345 ILIVDDITEGGNATLEDVRDEITRTLRSEEA 375


>gi|317178673|dbj|BAJ56461.1| hypothetical protein HPF30_0364 [Helicobacter pylori F30]
          Length = 487

 Score = 38.1 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 34/317 (10%), Positives = 88/317 (27%), Gaps = 21/317 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +    +  I   +      S+++ S     +    I+  ++++  
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEY 60

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             LK             +EL  + +K   +EKS    DS          A + GL     
Sbjct: 61  RRLKDAYAESIPN---FKELTEDQIKAMHLEKSA--LDSLINQALLRNLALDLGLGTTKQ 115

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
               + +             +     + ++ +  K+    +E     QK+  +  +    
Sbjct: 116 EVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP 175

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
                     KLQ++  +     +  +       + K     +K   K          + 
Sbjct: 176 LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFD 235

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
              +     +      +N  +             +  +  L    +++  +    +  K 
Sbjct: 236 ASLEKPDLKELEKYYHKNKVS------------YLDKEGKLQDFKSVQEQVKHDLSMQKA 283

Query: 298 EK-HEAEYVKKLRSNAI 313
            +     Y+   ++NA 
Sbjct: 284 NEKALRSYIALKKANAQ 300


>gi|309800306|ref|ZP_07694478.1| foldase protein PrsA [Streptococcus infantis SK1302]
 gi|308116053|gb|EFO53557.1| foldase protein PrsA [Streptococcus infantis SK1302]
          Length = 313

 Score = 38.1 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 33/313 (10%), Positives = 75/313 (23%), Gaps = 41/313 (13%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K L    + ++          S   +  I     G+VIT+    + +        N   +
Sbjct: 3   KKLMAGAITLLSVATLAACSNSSEGTDLISMK--GDVITEHQFFEEVK------NNATAQ 54

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           ++ +   I +       ++ G       V     +  +  G S +               
Sbjct: 55  QVLLNMTIQKVF----EKQYGSEVSDKEVEDAVAEEQKKYGDSYQTIL-------ARSGM 103

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
             +    Q     +V+          E E+     K         +   ++    ++K +
Sbjct: 104 TAESRKAQIRTSKLVEYAVK---KAAESELTDENYKKAFEEYTPEVTAQIIKLDSEDKAK 160

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLK 251
                 K          +      K ++        + G+  +   S   P    +    
Sbjct: 161 EVLAKAKESGADFAQLAKDNSTDEKTKE--------NGGEITFDSASTELPDVVKKAAFA 212

Query: 252 KSQNNTTNPYVTQK------GVEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEKH--EA 302
              N  ++                + +  K +        K  L       K        
Sbjct: 213 LDVNGISDVITAPGTQAYTSSFYIVKLTKKSEKSSNLDDYKEKLKTIILTQKQNDATFVQ 272

Query: 303 EYVKKLRSNAIIH 315
             + K   +A I 
Sbjct: 273 GVISKELQDANIK 285


>gi|257895172|ref|ZP_05674825.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           Com12]
 gi|257831737|gb|EEV58158.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           Com12]
          Length = 303

 Score = 38.1 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/313 (8%), Positives = 89/313 (28%), Gaps = 44/313 (14%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +   F+ +   +   +         +   +  G  I++ ++   +  ++           
Sbjct: 1   MKKRFLALAIVLGTGLLSGCTNAGEKTAVSYKGGTISEQEVMDSLKKMQG-------ADS 53

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           AVQ+LI   + +   +K G    +  ++  + Q  +  G S +        Q     + +
Sbjct: 54  AVQQLI---VYQVFEDKYGDDVSTKEIDSQYDQTKKQLGDSFDS-------QLKSAGYTE 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           Q            +          + ++          +    +   ++    ++  ++ 
Sbjct: 104 QKFKDSIKQSLAFQEGLKKHIKLTDEDLKTAW-----ESFHPEVEAQIIQVASEDDAKDV 158

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQF--QNLLKK 252
                          +        +  ++        GK ++   +   P    +   K 
Sbjct: 159 KKAA----------DKGDDFSKLAKDKSTDTTTKEDGGKVKFDSTTTTVPAEVKEAAFKL 208

Query: 253 SQNNTTNPYVTQKG------VEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEK--HEAE 303
                ++   +            + +   ++ G ++   K  L    T TK+     + +
Sbjct: 209 KDGQVSDVITSTNASTYNTEYYVVKMVKNQNKGNDMDKYKKELKEIATDTKLSDSTFQNK 268

Query: 304 YVKKLRSNAIIHY 316
            + ++  +A +  
Sbjct: 269 VIGEVLKDANVKI 281


>gi|260172707|ref|ZP_05759119.1| DSBA oxidoreductase [Bacteroides sp. D2]
 gi|315920999|ref|ZP_07917239.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694874|gb|EFS31709.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 330

 Score = 38.1 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/198 (10%), Positives = 58/198 (29%), Gaps = 5/198 (2%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIAL--LKLQKINGELEKIAVQELIVETLKK 87
           I         + + T +NGE I   +++ +       +     E++   +  LI + L +
Sbjct: 14  IACNTPVINKNDVVTEVNGEQILLSELASQSKQEIFDILNTAYEIKSRVLAGLIKQKLLE 73

Query: 88  QEIEKSGITFD---SNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW 144
              ++  ++ +      V         +        +     +G      K  L  +  +
Sbjct: 74  DAAKEENMSLEEFIDWFVQQKICVGQDSLKKRYGFNTQSFYVKGELIPLVKGSLEEKLSY 133

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
              +++  +    +   +    K+ +      E ++R +      N      F+     +
Sbjct: 134 QQKLRSRIVQALVDSLYQKADIKRFLYPPKQPECVVRDLCVYYRGNLDSPVSFIVASDYN 193

Query: 205 AEESRLRLPKDCNKLEKF 222
            E             + +
Sbjct: 194 CERCVQFEKTLSKLYDNY 211


>gi|57242050|ref|ZP_00369990.1| conserved hypothetical secreted protein, putative [Campylobacter
           upsaliensis RM3195]
 gi|57017242|gb|EAL54023.1| conserved hypothetical secreted protein, putative [Campylobacter
           upsaliensis RM3195]
          Length = 501

 Score = 38.1 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 61/231 (26%), Gaps = 18/231 (7%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL--------- 63
           + +  +    +   +V   +Y      +     +  E I+  + + R   +         
Sbjct: 14  VTIWISVIAFVGAGVVGWGAYDYNQNRNSSVAIVGNEKISFVEFNLRYNQIYGYYNQISN 73

Query: 64  ----KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
               +       L+ IA+  LI + L     +  G+  + N V            ++   
Sbjct: 74  GALSEENAEKLGLKDIALNSLIEDKLLLNFAKNLGLWANENEVIQELSATEEFQNINGIF 133

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN-----DFMLKYGNLEMEIPANKQKMKNIT 174
             +        +N   +          ++       +F  K   L+M   +   +     
Sbjct: 134 DKNIYYAILKQNNILSKNYEQILSDRIILNKLNKIFEFPAKENELQMLAASYFMQDALEI 193

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
            +    +  L    +   Q     +   K  +   L       K   F+  
Sbjct: 194 AKITFDKKDLAVDENALKQLWEAHKNDFKTQKSYELSSYFIEAKKSNFSQD 244


>gi|69246901|ref|ZP_00604176.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           DO]
 gi|257879190|ref|ZP_05658843.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,230,933]
 gi|257881991|ref|ZP_05661644.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,502]
 gi|257883808|ref|ZP_05663461.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,501]
 gi|257890020|ref|ZP_05669673.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,410]
 gi|258615590|ref|ZP_05713360.1| rotamase family protein [Enterococcus faecium DO]
 gi|260560163|ref|ZP_05832340.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           C68]
 gi|293553404|ref|ZP_06674035.1| foldase protein PrsA [Enterococcus faecium E1039]
 gi|293559520|ref|ZP_06676057.1| foldase protein PrsA [Enterococcus faecium E1162]
 gi|293567397|ref|ZP_06678746.1| foldase protein PrsA [Enterococcus faecium E1071]
 gi|294617171|ref|ZP_06696826.1| foldase protein PrsA [Enterococcus faecium E1679]
 gi|294621809|ref|ZP_06700967.1| foldase protein PrsA [Enterococcus faecium U0317]
 gi|314939171|ref|ZP_07846427.1| putative foldase protein PrsA [Enterococcus faecium TX0133a04]
 gi|314941489|ref|ZP_07848377.1| putative foldase protein PrsA [Enterococcus faecium TX0133C]
 gi|314947443|ref|ZP_07850862.1| putative foldase protein PrsA [Enterococcus faecium TX0082]
 gi|314950587|ref|ZP_07853668.1| putative foldase protein PrsA [Enterococcus faecium TX0133A]
 gi|314992441|ref|ZP_07857864.1| putative foldase protein PrsA [Enterococcus faecium TX0133B]
 gi|314996693|ref|ZP_07861717.1| putative foldase protein PrsA [Enterococcus faecium TX0133a01]
 gi|68195030|gb|EAN09494.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           DO]
 gi|257813418|gb|EEV42176.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,230,933]
 gi|257817649|gb|EEV44977.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,502]
 gi|257819646|gb|EEV46794.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,501]
 gi|257826380|gb|EEV53006.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,410]
 gi|260073730|gb|EEW62055.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           C68]
 gi|291589914|gb|EFF21713.1| foldase protein PrsA [Enterococcus faecium E1071]
 gi|291596571|gb|EFF27809.1| foldase protein PrsA [Enterococcus faecium E1679]
 gi|291598592|gb|EFF29651.1| foldase protein PrsA [Enterococcus faecium U0317]
 gi|291602417|gb|EFF32638.1| foldase protein PrsA [Enterococcus faecium E1039]
 gi|291606582|gb|EFF35979.1| foldase protein PrsA [Enterococcus faecium E1162]
 gi|313589177|gb|EFR68022.1| putative foldase protein PrsA [Enterococcus faecium TX0133a01]
 gi|313593016|gb|EFR71861.1| putative foldase protein PrsA [Enterococcus faecium TX0133B]
 gi|313597212|gb|EFR76057.1| putative foldase protein PrsA [Enterococcus faecium TX0133A]
 gi|313599706|gb|EFR78549.1| putative foldase protein PrsA [Enterococcus faecium TX0133C]
 gi|313641518|gb|EFS06098.1| putative foldase protein PrsA [Enterococcus faecium TX0133a04]
 gi|313646101|gb|EFS10681.1| putative foldase protein PrsA [Enterococcus faecium TX0082]
          Length = 303

 Score = 38.1 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/313 (8%), Positives = 89/313 (28%), Gaps = 44/313 (14%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +   F+ +   +   +         +   +  G  I++ ++   +  ++           
Sbjct: 1   MKKRFLALAIVLGTGLLSGCTNAGEKTAVSYKGGTISEQEVMDSLKKMQG-------ADS 53

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           AVQ+LI   + +   +K G    +  ++  + Q  +  G S +        Q     + +
Sbjct: 54  AVQQLI---VYQVFEDKYGDDVSTKEIDSQYDQTKKQLGDSFDS-------QLKSAGYTE 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           Q            +          + ++          +    +   ++    ++  ++ 
Sbjct: 104 QTFKDSIKQSLAFQEGLKKHIKLTDEDLKTAW-----ESFHPEVEAQIIQVASEDDAKDV 158

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQF--QNLLKK 252
                          +        +  ++        GK ++   +   P    +   K 
Sbjct: 159 KKAA----------DKGDDFSKLAKDKSTDTTTKEDGGKVKFDSTTTTVPAEVKEAAFKL 208

Query: 253 SQNNTTNPYVTQKG------VEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEK--HEAE 303
                ++   +            + +   ++ G ++   K  L    T TK+     + +
Sbjct: 209 KDGQVSDVITSTNASTYTTEYYVVKMVKNQNKGNDMDKYKKELKEIATDTKLSDSTFQNK 268

Query: 304 YVKKLRSNAIIHY 316
            + ++  +A +  
Sbjct: 269 VIGEVLKDANVKI 281


>gi|87123260|ref|ZP_01079111.1| hypothetical protein RS9917_05355 [Synechococcus sp. RS9917]
 gi|86168980|gb|EAQ70236.1| hypothetical protein RS9917_05355 [Synechococcus sp. RS9917]
          Length = 221

 Score = 38.1 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 7/110 (6%), Positives = 26/110 (23%), Gaps = 1/110 (0%)

Query: 200 KRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL-HPQFQNLLKKSQNNTT 258
           +  +   +             +F+      + G    +  +         L         
Sbjct: 102 QAQELYLQIAHGEADFPELASRFSQGPEQSTNGVVGPVPLNQAHPSLADKLRAAQPGALL 161

Query: 259 NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
            P+   +      +        +  +   +S +     +++  A  +  L
Sbjct: 162 EPFRIDRWWVIARLERYAAASFDARMAEQMSVELLQEWLQQETAHRLSAL 211


>gi|196228020|ref|ZP_03126887.1| hypothetical protein CfE428DRAFT_0051 [Chthoniobacter flavus
           Ellin428]
 gi|196227423|gb|EDY21926.1| hypothetical protein CfE428DRAFT_0051 [Chthoniobacter flavus
           Ellin428]
          Length = 507

 Score = 38.1 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/160 (10%), Positives = 38/160 (23%), Gaps = 11/160 (6%)

Query: 155 KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPK 214
                        +     T++    +  L     +         K  K    +   L  
Sbjct: 348 NITPPRPLAYEEAKANLADTLKHERAQEALNLKATDVRNKIEEAIKGGKTFAAAAQELGV 407

Query: 215 DCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICD 274
                  F+ K   +          + +    Q      Q   +    +  G   + +  
Sbjct: 408 KAEDFPAFSPKEPKMD-------QPNAM-EVMQATGDLHQGQVSPVVPSSDGSLIVYVSK 459

Query: 275 KRDLGG--EIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
           +  +      A K  L+      +      +++ KLR  A
Sbjct: 460 RLPIDEAKYKADKTQLADSLAEFQQTALFQQWL-KLRRAA 498


>gi|307709160|ref|ZP_07645619.1| foldase protein prsA precursor [Streptococcus mitis SK564]
 gi|307620106|gb|EFN99223.1| foldase protein prsA precursor [Streptococcus mitis SK564]
          Length = 312

 Score = 37.7 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 36/313 (11%), Positives = 80/313 (25%), Gaps = 41/313 (13%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K L    + ++         K    +  I     G+VIT+    +++        N   +
Sbjct: 3   KKLLAGAITLLSVATLAACSKGSEGADLISMK--GDVITEHQFYEQVKS------NPSAQ 54

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           ++ +   I +  +KQ   +      ++T+     Q+  N           L+        
Sbjct: 55  QVLLNLTIQKVFEKQYGSEVDEKEVNDTIAEEEKQYGENYQRVLSQAGMTLET------- 107

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                  Q     +V+          E E+  +  K         +   ++    ++K +
Sbjct: 108 ----RKAQIRTSKLVELAVK---KAAEAELTDDAYKKAFDEYTPDVTAQIIRLDNEDKAK 160

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLK 251
                 K          +      K +         + G+  +   S   P+   +    
Sbjct: 161 EILEKAKASDADFAQLAKDNSTDEKTKA--------NGGEITFDSASTEVPEQVKKAAFA 212

Query: 252 KSQNNTTNPYVT------QKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEK--HEA 302
              N  ++                + +  K +    I   K  L       K        
Sbjct: 213 LDVNGVSDVITATGTQAYSSQYYIVKVTKKTEKSSNIDNYKEKLKTVILTQKQNDSTFVQ 272

Query: 303 EYVKKLRSNAIIH 315
             + K    A I 
Sbjct: 273 SIIGKELQAANIK 285


>gi|239930810|ref|ZP_04687763.1| lipoprotein [Streptomyces ghanaensis ATCC 14672]
 gi|291439175|ref|ZP_06578565.1| lipoprotein [Streptomyces ghanaensis ATCC 14672]
 gi|291342070|gb|EFE69026.1| lipoprotein [Streptomyces ghanaensis ATCC 14672]
          Length = 215

 Score = 37.7 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/123 (9%), Positives = 38/123 (30%), Gaps = 15/123 (12%)

Query: 43  RTTINGEVITDGDISKRI---------------ALLKLQKINGELEKIAVQELIVETLKK 87
              +  + IT   +  R+                  +     G L +  +  ++++ + +
Sbjct: 34  AAVVGDQRITVSQLEDRVSEVRAAQRAAVPDEAQYAQAIARTGSLTRDTLHGMVLDRVLQ 93

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
                +G+T     +           G +    +++L + G+      + L +Q     +
Sbjct: 94  HAARDAGVTVTPREIQQMRSGLEEQAGGAEALEAAWLQQYGVPPQRLDENLRLQLEAQKL 153

Query: 148 VKN 150
            + 
Sbjct: 154 AQR 156


>gi|332826777|gb|EGJ99594.1| hypothetical protein HMPREF9455_04090 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 702

 Score = 37.7 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/190 (11%), Positives = 57/190 (30%), Gaps = 28/190 (14%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
             K+ +     + ++    +  +F     V+     M  +    ++G+VIT  + S +IA
Sbjct: 4   LQKIRSKSGLLVGIIAVGLLAFVFP-WGEVTTFVNKMRDK-AFVVDGKVITTKEYSDKIA 61

Query: 62  LLKLQKI------------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV-- 107
             +  +             N ++ ++A Q+++ E +  +E  + G+      +N      
Sbjct: 62  QWENFQKIMSNQSSLDEFTNSQIREMAYQQMVKEIMLDEEAGRLGLAVTPEELNDMVYGP 121

Query: 108 ------------QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLK 155
                        + +           FL          ++    + +    +       
Sbjct: 122 VVAPILYQIPFFANPQTGQFDKAYLMQFLSDINQDPTTMQEPHRSEIMARREIWAFIQNM 181

Query: 156 YGNLEMEIPA 165
                +E   
Sbjct: 182 MKYQRLEEKY 191


>gi|254411711|ref|ZP_05025487.1| hypothetical protein MC7420_4677 [Microcoleus chthonoplastes PCC
           7420]
 gi|196181433|gb|EDX76421.1| hypothetical protein MC7420_4677 [Microcoleus chthonoplastes PCC
           7420]
          Length = 239

 Score = 37.7 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/225 (6%), Positives = 55/225 (24%), Gaps = 2/225 (0%)

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           + +     +I        +  +       A  T  + E   +    + +           
Sbjct: 1   MNQVKLSCQIPDLVEQIVTRKIITTAASEAGITMETEELQETANQFRFMNKLLSADETWT 60

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
                 +  +DF        +          +     +    + ++              
Sbjct: 61  WLKKQSLSLDDFEEIVYYTAISGKLAAYLFADKVEPYFYEHQLDYASAVIYEVVLDDEDL 120

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYLLESDLHPQF-QNLLKKSQNNTT 258
            ++             +  +++   +      G    +   D+ P+    +   +     
Sbjct: 121 AMELFYAITTEEMSFYDVAQQYIQTVELRRKGGYRGMVQRQDMKPEISAAVFAATPPQML 180

Query: 259 NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAE 303
            P +T +GV  I + +      +   +  + +      +++   +
Sbjct: 181 KPIMTSQGVHLIFVEEMIQPELDDKTRLEIVSNLFSAWLKQKIEQ 225


>gi|256845592|ref|ZP_05551050.1| peptidylprolyl isomerase [Fusobacterium sp. 3_1_36A2]
 gi|294785119|ref|ZP_06750407.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 3_1_27]
 gi|256719151|gb|EEU32706.1| peptidylprolyl isomerase [Fusobacterium sp. 3_1_36A2]
 gi|294486833|gb|EFG34195.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 3_1_27]
          Length = 563

 Score = 37.7 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 49/171 (28%), Gaps = 8/171 (4%)

Query: 148 VKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEE 207
           +      +    + ++     + K+           L  I     +    + K   +   
Sbjct: 298 LAEKVRDEVKPTDEDLLKFFNENKSKYSIPATADAKLVFISVKSAKEDDNLAKEKAEKLL 357

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN--TTNPYVTQK 265
           S L       K +  ++    +          + +  +F+  LK   +N        T+ 
Sbjct: 358 SELTPENFTEKGKSLSNNQDIIY-QDLGTFGTTAMVKEFEEALKDVPSNTVVNKVIKTKF 416

Query: 266 GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS-NAIIH 315
           G     +  K++         ++     P   EK   E ++KL    A I 
Sbjct: 417 GYHVAYV--KKNDNNRQWAVEHILIVPYP--SEKTMTEKLEKLNKVKADIE 463


>gi|283956103|ref|ZP_06373590.1| LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase D
           [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792423|gb|EFC31205.1| LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase D
           [Campylobacter jejuni subsp. jejuni 1336]
          Length = 496

 Score = 37.7 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/217 (10%), Positives = 59/217 (27%), Gaps = 15/217 (6%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL--------- 63
           + +  +    +    +   +Y      S    T+  E I   +   R   +         
Sbjct: 14  VTIWVSTIAFVGAGFLGWGAYDFNLNRSSSVATVGNEKIGFSEFDTRYRQILSYYNQISN 73

Query: 64  ----KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
                       ++ IA+  L+ + L     +  GI  + N +             + + 
Sbjct: 74  GALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQKLANTREFQDPTGDF 133

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYL 179
             +   +    +N   +    Q     +       +  N+  +    K    +  +++ L
Sbjct: 134 NKTIYYELLNANNLTPKDYETQLANEVITDKL--NQIFNIPSKDEELKMLASSYFMQDAL 191

Query: 180 IRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
               +     N   N+  ++K   + +E         
Sbjct: 192 SIAKIDYDKKNIKINEEDLKKLWNEHKEDYKTKKIYE 228


>gi|297380175|gb|ADI35062.1| Hypothetical protein HPV225_1003 [Helicobacter pylori v225d]
          Length = 517

 Score = 37.7 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 35/317 (11%), Positives = 89/317 (28%), Gaps = 21/317 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +    +  I   +      S+++ S     +    I+  ++++  
Sbjct: 31  MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEY 90

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             LK             +EL  + +K   +EKS    DS          A + GL A   
Sbjct: 91  RRLKDAYAESIPN---FKELTEDQIKAMHLEKSA--LDSLINQALLRNLALDLGLGATKQ 145

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
               + +             +     + ++ +  K+    +E     QK+  +  +    
Sbjct: 146 EVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP 205

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
                     KLQ++  +     +  +       + K     +K   K          + 
Sbjct: 206 LEQSSLSLWAKLQDKLDILILSPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFD 265

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
              +     +      +N  +             +  +  L    +++  +    +  K 
Sbjct: 266 ASLEKPDLKELEEYYHKNKVS------------YLDKEGKLQDFKSVQEQVKHDLSMQKA 313

Query: 298 EK-HEAEYVKKLRSNAI 313
            +     Y+   ++NA 
Sbjct: 314 NEKALRSYIALKKANAQ 330


>gi|254237731|ref|ZP_04931054.1| hypothetical protein PACG_03819 [Pseudomonas aeruginosa C3719]
 gi|126169662|gb|EAZ55173.1| hypothetical protein PACG_03819 [Pseudomonas aeruginosa C3719]
          Length = 428

 Score = 37.7 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/171 (8%), Positives = 48/171 (28%), Gaps = 14/171 (8%)

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
            +   K  + + E    +   +   V +     +  +   +  +    ++  +   E  R
Sbjct: 265 RELAGKVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRGGLAFDEAVR 324

Query: 210 LRLPKDCNKLEKFASKIHDVSIGKAQYLLE--SDLHPQFQNLLKKSQNNTTNPYVTQKGV 267
                        A        G    +      L    +  L +  +  + P       
Sbjct: 325 R---------YSLADDRDRDPPGDLGLIRPQDGRLDLLRKTALIQKADTVSQPMRIDCAF 375

Query: 268 EYIAI---CDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           E + +    D++    + +++  ++      ++       ++ L + A + 
Sbjct: 376 EIVRVRSREDRQLPLDDRSVRFEVNQAVAREQLAAQFETRLRNLLAGARVE 426


>gi|309388964|gb|ADO76844.1| SurA domain protein [Halanaerobium praevalens DSM 2228]
          Length = 425

 Score = 37.7 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 56/232 (24%), Gaps = 16/232 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLII-FCIVPI-----VSYKSWAMSSRIRTTINGEVITDG 54
           M   +  +    + L+   FV+   F             ++      +   +NG  I+  
Sbjct: 1   MFDTLRNNSRIIVYLVVIAFVISGGFMGYGAYLNNRGGGQAPNQGPAVIAEVNGMEISQQ 60

Query: 55  DI-----SKRIALLKLQKINGELEKIAVQELIVETLKK--QEIEKSGITFDSNTVNYFFV 107
           +       +                  ++ LI   L     E     +    + V+  + 
Sbjct: 61  EYYSMLQQQAPNSSLSSSQIIPFRYQVLEALIERKLILAKAEEFDIQVEVSDSEVDENYN 120

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFML---KYGNLEMEIP 164
                  ++ ++ +  L +QG      ++ +         +         K    + EI 
Sbjct: 121 NILEQNEITDQELAETLAEQGSTIGELRENIKDSLQNTKTLTEAINQGVGKVEVSDQEIQ 180

Query: 165 ANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDC 216
               +       E        S            +       E + +   + 
Sbjct: 181 KLYNQRYLKVETESKKTETENSKQKESDSEPKLEEVSSDLKTEIKNKKRNEA 232



 Score = 37.0 bits (83), Expect = 4.2,   Method: Composition-based stats.
 Identities = 21/207 (10%), Positives = 53/207 (25%), Gaps = 8/207 (3%)

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
           A   G+       +   Q    N       I      V++     K    + E   + Q 
Sbjct: 50  AEVNGMEISQQEYYSMLQQQAPNSSLSSSQIIPFRYQVLEALIERKLILAKAE-EFDIQV 108

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
             + +  +     +L        +    + ++     E R  +       +     I+  
Sbjct: 109 EVSDSEVDENYNNILEQNEITDQELAETLAEQGSTIGELRENIKDSLQNTKTLTEAINQG 168

Query: 230 SIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS 289
                   +      +  N         +    T+         +         + + L 
Sbjct: 169 VGK---VEVSDQEIQKLYNQRYLKVETESKKTETENS----KQKESDSEPKLEEVSSDLK 221

Query: 290 AQNTPTKIEKHEAEYVKKLRSNAIIHY 316
            +    K  +    ++K+L+++A I  
Sbjct: 222 TEIKNKKRNEAINNWLKELKTDAQIKI 248


>gi|188527796|ref|YP_001910483.1| conserved hypothetical secreted protein [Helicobacter pylori
           Shi470]
 gi|188144036|gb|ACD48453.1| conserved hypothetical secreted protein [Helicobacter pylori
           Shi470]
          Length = 517

 Score = 37.7 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 35/317 (11%), Positives = 90/317 (28%), Gaps = 21/317 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +    +  I   +      S+++ S     +    I+  ++++  
Sbjct: 31  MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEY 90

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             LK             +EL  + +K   +EKS    DS          A + GL A   
Sbjct: 91  RRLKDAYAESIPN---FKELTEDQIKAMHLEKSA--LDSLINQALLRNLALDLGLGATKQ 145

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
               + +             +     + ++ +  K+    +E     QK+  +  +    
Sbjct: 146 EVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP 205

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
                     KLQ++  +     +  +       + K     +K   K          + 
Sbjct: 206 LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFD 265

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
              +     +      +N  +             +  +  L    +++  +    +  K+
Sbjct: 266 ASLEKPDLKELEEYYHKNKVS------------YLDKEGKLQDFKSVQEQVKHDLSMQKV 313

Query: 298 EK-HEAEYVKKLRSNAI 313
            +     Y+   ++NA 
Sbjct: 314 NEKALRSYIALKKANAQ 330


>gi|88607320|ref|YP_505198.1| ppiC/parvulin rotamase family protein [Anaplasma phagocytophilum
           HZ]
 gi|88598383|gb|ABD43853.1| ppiC/parvulin rotamase family protein [Anaplasma phagocytophilum
           HZ]
          Length = 601

 Score = 37.7 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/166 (9%), Positives = 49/166 (29%), Gaps = 9/166 (5%)

Query: 145 PDVVKNDFMLKYGNLEMEIPANKQKMKNIT------VREYLIRTVLFSIPDNKLQNQGFV 198
             + +  +       E          ++          + +   +  S   ++      V
Sbjct: 190 QKLFEEQYKNSLNFPEYRSADYIIMAEDDLLADVIVSDQEVDVEIKNSELHDQRDVLNLV 249

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNT 257
                +AE +     +  +  E  +   + +       + +  L    +N++   ++   
Sbjct: 250 FTDKNEAELAYKAYQEGKSFEELVSDAGYTIEDIALNNISKDVLPVGVRNVVFALNEGEV 309

Query: 258 TNPYVTQKGVEYIAICDKRDLGGE--IALKAYLSAQNTPTKIEKHE 301
           +  + +  G   + +  K ++  E    LK  +S+     K  +  
Sbjct: 310 SEMFRSVVGWHIMKVIRKHEITKEDLEKLKEKISSNIRRQKAGELL 355


>gi|261839760|gb|ACX99525.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori 52]
          Length = 487

 Score = 37.7 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 35/317 (11%), Positives = 89/317 (28%), Gaps = 21/317 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +    +  I   +      S+++ S     +    I+  ++++  
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSGSAAKVGQIKISQEELAQEY 60

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             LK             +EL  + +K   +EKS    DS          A + GL A   
Sbjct: 61  RRLKDAYAESIPN---FKELTEDQIKAMHLEKSA--LDSLINQALLRNLALDLGLGATKQ 115

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
               + +             +     + ++ +  K+    +E     QK+  +  +    
Sbjct: 116 EVAKEIKKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP 175

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
                     KLQ++  +     +  +       + K     +K   K          + 
Sbjct: 176 LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFD 235

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
              +     +      +N  +             +  +  L    +++  +    +  K 
Sbjct: 236 ASLEKPDLKELEEYYHKNKVS------------YLDKEGKLQDFKSVQEQVKHDLSMQKA 283

Query: 298 EK-HEAEYVKKLRSNAI 313
            +     Y+   ++NA 
Sbjct: 284 NEKALRSYIALKKANAQ 300


>gi|89097668|ref|ZP_01170556.1| hypothetical protein B14911_14772 [Bacillus sp. NRRL B-14911]
 gi|89087527|gb|EAR66640.1| hypothetical protein B14911_14772 [Bacillus sp. NRRL B-14911]
          Length = 251

 Score = 37.7 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/191 (9%), Positives = 54/191 (28%), Gaps = 11/191 (5%)

Query: 35  SWAMSSRIRTTINGEVITDGDISKRIALLKLQKI-----------NGELEKIAVQELIVE 83
                      +N + I   D +  +   ++              + ++++  +  L+ +
Sbjct: 56  QKVDEKETVAVVNDDKILGKDFNGMLQNAQMSYQMSGQDPTTKEASEQIKQQTIDSLVGQ 115

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
           +L  QE  + G       V     +  +      + F++ L   G+ +   K  ++   +
Sbjct: 116 SLIMQEAAEKGYKASEEEVQGQLDEIKKQYEGDDKKFAAALKDAGLTEEELKGQISDSIV 175

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
               +  +        E       Q   +    + +           +  N    Q+ + 
Sbjct: 176 SNKYIDKEIKADAATEEEVKAYYDQVKASTPEGQSVPEYEEIKTKIQEQLNDQKKQEVLV 235

Query: 204 DAEESRLRLPK 214
              E   +  K
Sbjct: 236 KQVEDLKKDAK 246


>gi|227552245|ref|ZP_03982294.1| peptidylprolyl isomerase [Enterococcus faecium TX1330]
 gi|227178624|gb|EEI59596.1| peptidylprolyl isomerase [Enterococcus faecium TX1330]
          Length = 303

 Score = 37.7 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/313 (8%), Positives = 89/313 (28%), Gaps = 44/313 (14%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +   F+ +   +   +         +   +  G  I++ ++   +  ++           
Sbjct: 1   MKKRFLALAIVLGTGLLSGCTNAGEKTAVSYKGGTISEQEVMDSLKKMQG-------ADS 53

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           AVQ+LI   + +   +K G    +  ++  + Q  +  G S +        Q     + +
Sbjct: 54  AVQQLI---VYQVFEDKYGDDVSTKEIDSQYDQTKKQLGDSFDS-------QLKSAGYTE 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           Q            +          + ++          +    +   ++    ++  ++ 
Sbjct: 104 QTFKDSIKQSLAFQEGLKKHIKLTDEDLKTAW-----ESFHPEVEAQIIQVASEDDAKDV 158

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQF--QNLLKK 252
                          +        +  ++        GK ++   +   P    +   K 
Sbjct: 159 KKAA----------DKGDDFSKLAKDKSTDTTTKEDGGKVKFDSTTTTVPAEVKEAAFKL 208

Query: 253 SQNNTTNPYVTQKG------VEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEK--HEAE 303
                ++   +            + +   ++ G ++   K  L    T TK+     + +
Sbjct: 209 KDGQVSDVITSTNASTYNTEYYVVKMVKNQNKGNDMDKYKKELKEIATDTKLSDSTFQNK 268

Query: 304 YVKKLRSNAIIHY 316
            + ++  +A +  
Sbjct: 269 VIGEVLKDANVKI 281


>gi|222153359|ref|YP_002562536.1| foldase protein PrsA 1 [Streptococcus uberis 0140J]
 gi|222114172|emb|CAR42691.1| foldase protein PrsA 1 precursor [Streptococcus uberis 0140J]
          Length = 314

 Score = 37.7 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 40/314 (12%), Positives = 93/314 (29%), Gaps = 35/314 (11%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           ++   K++T +  L     +   S  S         T+ G+ IT  D             
Sbjct: 1   MNTSKKIVTGFVTLASVLTLAACSSTSDNTK---VVTMKGDTITVTDFYNEAK------- 50

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
                + ++  LI+  + ++E  KS                 +        FS  L + G
Sbjct: 51  TSTAAQQSMLSLILSRVFEKEYGKSVPEKKVEESYN------KTAKQYGSSFSDALAQAG 104

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
           +  + +K+ +    +    VK     +  +   +        +  T              
Sbjct: 105 LTTDTYKKQIRTTMLVEYAVKQAAKKELTDDNYKKAFESYTPEMTTQVIAF--------- 155

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
                ++   +K +++ +           +    A+K  D +   A  +L SD+  +   
Sbjct: 156 ----DDEEKAKKVLEETKAEGADFANIAKENTTEANKKIDYTFDSADTVLPSDVIKETAK 211

Query: 249 LLKKSQNNTTNPYVT---QKGVEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEK--HEA 302
           L +  ++       +   QK    + +  K +   +    K+ L       K      + 
Sbjct: 212 LNEGEKSAVITVMDSRTYQKKYYVVHLVKKAEKKADWKEYKSRLKEIIMNEKENDSNFQN 271

Query: 303 EYVKKLRSNAIIHY 316
           + + K    A +  
Sbjct: 272 KVISKTLDKANVKI 285


>gi|217032656|ref|ZP_03438143.1| hypothetical protein HPB128_19g17 [Helicobacter pylori B128]
 gi|298736064|ref|YP_003728589.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori B8]
 gi|216945666|gb|EEC24294.1| hypothetical protein HPB128_19g17 [Helicobacter pylori B128]
 gi|298355253|emb|CBI66125.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori B8]
          Length = 487

 Score = 37.7 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 29/317 (9%), Positives = 83/317 (26%), Gaps = 21/317 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +    +  I   +      S+++ S     +    I+  ++++  
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEY 60

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             LK         +       +   + + +       DS          A + GL A   
Sbjct: 61  RRLK-----DAYAESIPDFKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQ 115

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
               + +             +     + ++ +  K+    +E     QK+  +  +    
Sbjct: 116 EVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP 175

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
                     KLQ++  +        +       + K     +K   K          + 
Sbjct: 176 LEQSSLSLWAKLQDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFD 235

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
              +     +      +N  +             +  +  L    +++  +    +  K 
Sbjct: 236 ASLEKPDLKELEEYYHKNKVS------------YLDKEGKLQDFKSVQEQVKHDLSMQKA 283

Query: 298 EK-HEAEYVKKLRSNAI 313
            +     Y+   ++NA 
Sbjct: 284 NEKALRSYIALKKANAQ 300


>gi|261838345|gb|ACX98111.1| pedidyl-prolyl cis-trans isomerase D [Helicobacter pylori 51]
          Length = 487

 Score = 37.7 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 35/317 (11%), Positives = 90/317 (28%), Gaps = 21/317 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +    +  I   +      S+++ S     +    I+  ++++  
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEY 60

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             LK             +EL  + +K   +EKS    DS          A + GL A   
Sbjct: 61  RRLKDAYAESIPN---FKELTEDQIKAMHLEKSA--LDSLINQALLRNLALDLGLGATKQ 115

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
               + +             +     + ++ +  K+    +E     QK+  +  +    
Sbjct: 116 EVAKEIKKTSVFQKDGIFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP 175

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
                     KLQ++  +     +  +    +  + K     +K   K          + 
Sbjct: 176 LEQSSLSLWAKLQDKLDILILNPNDVKISLNKEEMKKYYESHKKDFKKPTSFKTRSLYFD 235

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
              +     +      +N  +             +  +  L    +++  +    +  K 
Sbjct: 236 ASLEKPDLKELEEYYHKNKVS------------YLDKEGKLQDFKSVQEQVKHDLSMQKA 283

Query: 298 EK-HEAEYVKKLRSNAI 313
            +     Y+   ++NA 
Sbjct: 284 NEKALRSYIALKKANAQ 300


>gi|153003349|ref|YP_001377674.1| DSBA oxidoreductase [Anaeromyxobacter sp. Fw109-5]
 gi|152026922|gb|ABS24690.1| DSBA oxidoreductase [Anaeromyxobacter sp. Fw109-5]
          Length = 354

 Score = 37.7 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 18/40 (45%)

Query: 276 RDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           + L     +K  ++      K +   AEY ++L+ +A + 
Sbjct: 133 QQLPPYEQVKPDIARFVKNQKAQGLLAEYYEELKKDAKVE 172


>gi|302671608|ref|YP_003831568.1| peptidyl-prolyl cis-trans isomerase PpiC-type [Butyrivibrio
           proteoclasticus B316]
 gi|302396081|gb|ADL34986.1| peptidyl-prolyl cis-trans isomerase PpiC-type [Butyrivibrio
           proteoclasticus B316]
          Length = 356

 Score = 37.7 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 30/327 (9%), Positives = 88/327 (26%), Gaps = 32/327 (9%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTIN--GEVITDGD-----ISKRIAL 62
           +  IK ++   + +I   V + +  S   + ++  T     + I   +     I + +A 
Sbjct: 6   TIHIKRISMILIGMILV-VSLTACGSLDGTRKVVFTTGFSDDEIFRIEDSVCSIQEIMAY 64

Query: 63  L----------------KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF 106
           L                + Q  +G + +   + ++ +  + + +            +   
Sbjct: 65  LINTQNGYEGTFGREIWETQTDDGTVAQQLKESILAKVAQIKAMNLLAGEMGIVLDDNEL 124

Query: 107 VQHARNTGLSAEDFSSFL-DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
                      E  +    +            +  +    D + +  +        +  A
Sbjct: 125 SMAREAAATYYESLTPEEIEAMKGITQEDVFRIYSEYALADKLYDYIIRDINPEISDDEA 184

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
               ++ I ++ Y +      +P N         K      +       +    E   ++
Sbjct: 185 RTITVEQIFLKTYDLNASGEKVPFNDTAKNTVYLKAKSIRNQFLDGASFEELMSEYNEAE 244

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKKS-QNNTTNPYVTQKGVEYIAICDKRDLGGEIAL 284
              +S G      + ++   ++ +      +  ++      G   I      +       
Sbjct: 245 ESTISFG------KGEMEEAYETVAFNLGTDEVSDVVEVNDGYVIIKCVTTFNREETEYN 298

Query: 285 KAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           K  + A+       +    YV  L   
Sbjct: 299 KVRIVAERKREVFGEQYDAYVDTLTKE 325


>gi|167747442|ref|ZP_02419569.1| hypothetical protein ANACAC_02162 [Anaerostipes caccae DSM 14662]
 gi|317471171|ref|ZP_07930542.1| ppic-type ppiase domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
 gi|167652804|gb|EDR96933.1| hypothetical protein ANACAC_02162 [Anaerostipes caccae DSM 14662]
 gi|316901386|gb|EFV23329.1| ppic-type ppiase domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
          Length = 370

 Score = 37.7 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/241 (8%), Positives = 63/241 (26%), Gaps = 5/241 (2%)

Query: 64  KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSF 123
           K   +   ++   + ++    +     +   +   S+            T          
Sbjct: 81  KKITMQDSIKDNVINQIKTVKVLADHADDYKVKLTSDEKKQLDESVKSFTKNELGKRVMK 140

Query: 124 LDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
           +      D  + + +  +++    V N  + K      +  A   K+  +        + 
Sbjct: 141 VTG---ADKDYIKEIQQENLIAQKVMNAIIEKADVKVTDDEAKTVKVYKLVFTTKKTDSK 197

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLH 243
                +   + +    K+ K+A ++  +        +K+     +         +     
Sbjct: 198 TGKEVNMTAKEKAAQLKKAKEALKAIKKGQSVKAVAKKYKVDTDNEESYTKGKAVLGT-- 255

Query: 244 PQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAE 303
                  K  +N  +    T      I + +          K+ L  +      +K   +
Sbjct: 256 KFEDAASKLKKNQVSGVVETDDAYVIIKMLNPNVKSELATSKSTLLQEKQQEAYQKVYKK 315

Query: 304 Y 304
           +
Sbjct: 316 W 316


>gi|15900858|ref|NP_345462.1| foldase protein PrsA [Streptococcus pneumoniae TIGR4]
 gi|111657958|ref|ZP_01408665.1| hypothetical protein SpneT_02000847 [Streptococcus pneumoniae
           TIGR4]
 gi|149010372|ref|ZP_01831743.1| peptidylprolyl isomerase [Streptococcus pneumoniae SP19-BS75]
 gi|182683926|ref|YP_001835673.1| peptidylprolyl isomerase [Streptococcus pneumoniae CGSP14]
 gi|225858774|ref|YP_002740284.1| foldase protein PrsA [Streptococcus pneumoniae 70585]
 gi|303254448|ref|ZP_07340554.1| foldase protein PrsA [Streptococcus pneumoniae BS455]
 gi|303259894|ref|ZP_07345869.1| peptidylprolyl isomerase [Streptococcus pneumoniae SP-BS293]
 gi|303262308|ref|ZP_07348252.1| peptidylprolyl isomerase [Streptococcus pneumoniae SP14-BS292]
 gi|303264730|ref|ZP_07350648.1| peptidylprolyl isomerase [Streptococcus pneumoniae BS397]
 gi|303269142|ref|ZP_07354921.1| peptidylprolyl isomerase [Streptococcus pneumoniae BS458]
 gi|46397004|sp|Q97R51|PRSA_STRPN RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|226712008|sp|B2IPD4|PRSA_STRPS RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|254783413|sp|C1C6V8|PRSA_STRP7 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|14972456|gb|AAK75102.1| putative protease maturation protein [Streptococcus pneumoniae
           TIGR4]
 gi|147764853|gb|EDK71782.1| peptidylprolyl isomerase [Streptococcus pneumoniae SP19-BS75]
 gi|182629260|gb|ACB90208.1| peptidylprolyl isomerase [Streptococcus pneumoniae CGSP14]
 gi|225721397|gb|ACO17251.1| foldase protein PrsA [Streptococcus pneumoniae 70585]
 gi|302598615|gb|EFL65655.1| foldase protein PrsA [Streptococcus pneumoniae BS455]
 gi|302636631|gb|EFL67122.1| peptidylprolyl isomerase [Streptococcus pneumoniae SP14-BS292]
 gi|302639099|gb|EFL69559.1| peptidylprolyl isomerase [Streptococcus pneumoniae SP-BS293]
 gi|302641329|gb|EFL71697.1| peptidylprolyl isomerase [Streptococcus pneumoniae BS458]
 gi|302645817|gb|EFL76046.1| peptidylprolyl isomerase [Streptococcus pneumoniae BS397]
          Length = 313

 Score = 37.7 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 35/313 (11%), Positives = 79/313 (25%), Gaps = 41/313 (13%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K L    + ++         K    +  I     G+VIT+    +++        N   +
Sbjct: 3   KKLLAGAITLLSVATLAACSKGSEGADLISMK--GDVITEHQFYEQVKS------NPSAQ 54

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           ++ +   I +  +KQ   +       +T+     Q+  N           L+        
Sbjct: 55  QVLLNMTIQKVFEKQYGSELDDKEVDDTIAEEKKQYGENYQRVLSQAGMTLET------- 107

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                  Q     +V+          E E+     K         +   ++    ++K +
Sbjct: 108 ----RKAQIRTSKLVELAVK---KVAEAELTDEAYKKAFDEYTPDVTAQIIRLNNEDKAK 160

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLK 251
                 K          +      K ++        + G+  +   S   P+   +    
Sbjct: 161 EVLEKAKAEGADFAQLAKDNSTDEKTKE--------NGGEITFDSASTEVPEQVKKAAFA 212

Query: 252 KSQNNTTNPYVT------QKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEK--HEA 302
              +  ++                + +  K +    I   K  L       K        
Sbjct: 213 LDVDGVSDVITATGTQAYSSQYYIVKLTKKTEKSSNIDDYKEKLKTVILTQKQNDSTFVQ 272

Query: 303 EYVKKLRSNAIIH 315
             + K    A I 
Sbjct: 273 SIIGKELQAANIK 285


>gi|270292892|ref|ZP_06199103.1| foldase protein PrsA [Streptococcus sp. M143]
 gi|270278871|gb|EFA24717.1| foldase protein PrsA [Streptococcus sp. M143]
          Length = 313

 Score = 37.7 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 35/313 (11%), Positives = 83/313 (26%), Gaps = 41/313 (13%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K L    + ++         KS   +  I     G+V+T+    +++        N   +
Sbjct: 3   KKLLAGAITLLSVATLAACSKSSEGADLISMK--GDVVTEHQFYEQVK------NNPTAQ 54

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           ++ +   I +  +KQ   +       + V     ++  +     +      +        
Sbjct: 55  QVLLNMTIQKVFEKQYGSEVTDKEVDDAVAEEQKKYGDSYNSVLQRAGMTPET------- 107

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                  Q     +V+          E E+     +         +   ++    ++K +
Sbjct: 108 ----RKAQIRTSKLVELAVK---KAAENELTDEAYQKAFEAYTPDVTAQIIRMDNEDKAK 160

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES-DLHPQFQNLLKK 252
                 K          +   + +K ++        + G+  +   S +L  Q +     
Sbjct: 161 EVLEKAKAEGADFAQLAKDNSNDDKTKE--------NGGEITFDSASTELPEQVKKAAFA 212

Query: 253 SQNNTTNPYVTQKG-------VEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEK--HEA 302
              N  +  +T  G          I +  K +        K  L       K        
Sbjct: 213 LDVNGISDVITATGTQAYSTQYYIIKLTKKTEKSSNLDDYKEKLKTVILTQKQNDSSFVQ 272

Query: 303 EYVKKLRSNAIIH 315
             + K    A I 
Sbjct: 273 SVIGKEFQAANIK 285


>gi|108762810|ref|YP_633122.1| putative lipoprotein [Myxococcus xanthus DK 1622]
 gi|108466690|gb|ABF91875.1| putative lipoprotein [Myxococcus xanthus DK 1622]
          Length = 361

 Score = 37.7 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 5/39 (12%), Positives = 14/39 (35%)

Query: 277 DLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIH 315
           +      +K  +    T    ++      ++LR +A + 
Sbjct: 137 EGSTYEQMKPQIVEFLTQQPKQERAQALFEELRKSANVK 175


>gi|94265725|ref|ZP_01289462.1| hypothetical protein MldDRAFT_4726 [delta proteobacterium MLMS-1]
 gi|93453738|gb|EAT04114.1| hypothetical protein MldDRAFT_4726 [delta proteobacterium MLMS-1]
          Length = 229

 Score = 37.7 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 7/100 (7%)

Query: 13  IKLLTTYFVLIIFCIVP-------IVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
           +K L T  +++ F           I +    A        + G  IT  D+ + +A +  
Sbjct: 1   MKSLATILLVLFFTAACGQQEQEKIGAEAGPASDEGYIVQVGGNYITPADVEQELAGMPE 60

Query: 66  QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
            +          Q LI E +K++   +       +    +
Sbjct: 61  NRRTNYEMPGGKQRLIDEMIKREMFRQEAQRAGLDQSEEY 100


>gi|326789753|ref|YP_004307574.1| 3D domain-containing protein [Clostridium lentocellum DSM 5427]
 gi|326540517|gb|ADZ82376.1| 3D domain-containing protein [Clostridium lentocellum DSM 5427]
          Length = 340

 Score = 37.7 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 37/97 (38%), Gaps = 6/97 (6%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD-----ISKRIALLKLQKINGE 71
               +++   ++  VS  ++   S+I T ++   +T  +     + + +  LK+   + +
Sbjct: 6   RIALLIVALFMLCAVSITAYQSMSKIITLVDDGKVTQYETDASSVKELLTQLKVTLGDKD 65

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
             + A++  I + +K    E+   T            
Sbjct: 66  TVQPALETEIEDNMKITI-ERWKPTVSYTENGETVEF 101


>gi|268316633|ref|YP_003290352.1| hypothetical protein Rmar_1072 [Rhodothermus marinus DSM 4252]
 gi|262334167|gb|ACY47964.1| hypothetical protein Rmar_1072 [Rhodothermus marinus DSM 4252]
          Length = 590

 Score = 37.7 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/170 (7%), Positives = 35/170 (20%), Gaps = 12/170 (7%)

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
           +     +      E      +    ++   L R     I     +    ++ +I+     
Sbjct: 408 QQHIESRLPKPTEEALRAFYQAHAESLFYQLPRVYTEIIVRPTREAIDSIRAKIQRGV-- 465

Query: 209 RLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQK--- 265
                     L  +             +   ++     +            P   Q    
Sbjct: 466 PFEKASHRRLLRAYERT---REGKIITWNKRTEPPYFGELAFSLKVGEIAGPIEYQDVRE 522

Query: 266 --GVEYIAICDKRDLG--GEIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
                 I +  + +         +  +         E+   E   +LR  
Sbjct: 523 GRRYALIRVTKRLEEKQLTFEEARDRVEKAFLEHHRERLAREEAARLRER 572


>gi|15645592|ref|NP_207768.1| hypothetical protein HP0977 [Helicobacter pylori 26695]
 gi|2314119|gb|AAD08023.1| conserved hypothetical secreted protein [Helicobacter pylori 26695]
          Length = 487

 Score = 37.7 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 29/317 (9%), Positives = 83/317 (26%), Gaps = 21/317 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +    +  I   +      S+++ S     +    I+  ++++  
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEY 60

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             LK         +       +   + + +       DS          A + GL A   
Sbjct: 61  RRLK-----DAYAESIPDFKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQ 115

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
               + +             +     + ++ +  K+    +E     QK+  +  +    
Sbjct: 116 EVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP 175

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
                     KLQ++  +        +       + K     +K   K          + 
Sbjct: 176 LEQSSLSLWAKLQDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFD 235

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
              +     +      +N  +             +  +  L    +++  +    +  K 
Sbjct: 236 ASLEKPDLKELEEYYHKNKVS------------YLDKEGKLQDFKSVQEQVKHDLSMQKA 283

Query: 298 EK-HEAEYVKKLRSNAI 313
            +     Y+   ++NA 
Sbjct: 284 NEKALRSYIALKKANAQ 300


>gi|332673819|gb|AEE70636.1| peptidyl-prolyl cis-trans isomerase [Helicobacter pylori 83]
          Length = 487

 Score = 37.7 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 35/317 (11%), Positives = 89/317 (28%), Gaps = 21/317 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +    +  I   +      S+++ S     +    I+  ++++  
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEY 60

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             LK             +EL  + +K   +EKS    DS          A + GL A   
Sbjct: 61  RRLKDAYAESIPN---FKELTEDQIKAMHLEKSA--LDSLINQALLRNLALDLGLGATKQ 115

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
               + +             +     + ++ +  K+    +E     QK+  +  +    
Sbjct: 116 EVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP 175

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
                     KLQ++  +     +  +       + K     +K   K          + 
Sbjct: 176 LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFD 235

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
              +     +      +N  +             +  +  L    +++  +    +  K 
Sbjct: 236 ASLEKPNLKELEEYYHKNKVS------------YLDKEGKLQDFKSVQEQVKHDLSMQKA 283

Query: 298 EK-HEAEYVKKLRSNAI 313
            +     Y+   ++NA 
Sbjct: 284 NEKALRSYIALKKANAQ 300


>gi|308063803|gb|ADO05690.1| conserved hypothetical secreted protein [Helicobacter pylori
           Sat464]
          Length = 487

 Score = 37.7 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 35/317 (11%), Positives = 89/317 (28%), Gaps = 21/317 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +    +  I   +      S+++ S     +    I+  ++++  
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEY 60

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             LK             +EL  + +K   +EKS    DS          A + GL A   
Sbjct: 61  RRLKDAYAESIPN---FKELTEDQIKAMHLEKSA--LDSLINQALLRNLALDLGLGATKQ 115

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
               + +             +     + ++ +  K+    +E     QK+  +  +    
Sbjct: 116 EVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP 175

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
                     KLQ++  +     +  +       + K     +K   K          + 
Sbjct: 176 LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFD 235

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
              +     +      +N  +             +  +  L    +++  +    +  K 
Sbjct: 236 ASLEKPNLKELEEYYHKNKVS------------YLDKEGKLQDFKSVQEQVKHDLSMQKA 283

Query: 298 EK-HEAEYVKKLRSNAI 313
            +     Y+   ++NA 
Sbjct: 284 NEKALRSYIALKKANAQ 300


>gi|308062290|gb|ADO04178.1| conserved hypothetical secreted protein [Helicobacter pylori Cuz20]
          Length = 487

 Score = 37.7 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 35/317 (11%), Positives = 89/317 (28%), Gaps = 21/317 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +    +  I   +      S+++ S     +    I+  ++++  
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEY 60

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             LK             +EL  + +K   +EKS    DS          A + GL A   
Sbjct: 61  RRLKDAYAESIPN---FKELTEDQIKAMHLEKSA--LDSLINQALLRNLALDLGLGATKQ 115

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
               + +             +     + ++ +  K+    +E     QK+  +  +    
Sbjct: 116 EVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTP 175

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
                     KLQ++  +     +  +       + K     +K   K          + 
Sbjct: 176 LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFD 235

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
              +     +      +N  +             +  +  L    +++  +    +  K 
Sbjct: 236 ASLEKPNLKELEEYYHKNKVS------------YLDKEGKLQDFKSVQEQVKHDLSMQKA 283

Query: 298 EK-HEAEYVKKLRSNAI 313
            +     Y+   ++NA 
Sbjct: 284 NEKALRSYIALKKANAQ 300


>gi|172037585|ref|YP_001804086.1| hypothetical protein cce_2672 [Cyanothece sp. ATCC 51142]
 gi|171699039|gb|ACB52020.1| conserved hypothetical protein [Cyanothece sp. ATCC 51142]
          Length = 236

 Score = 37.7 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 66/242 (27%), Gaps = 21/242 (8%)

Query: 55  DISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
           ++   I  LK      E+      + I+    ++                   Q  + + 
Sbjct: 2   EVDTIINFLKTTLKFKEIYCQIQYQRIINQAAEKMNLTVTAE---EIQIEADSQRTQRSL 58

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
             A D  ++LD+Q I  + ++  +    +   + +  F  +      +   + +++    
Sbjct: 59  EKAADTYAWLDEQMINSDDWEAGIYNSILRQKLAEALFSQEVEKYFAQNKVDFEQVLLYQ 118

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKA 234
           +     +         + +   F Q       + + R                    G  
Sbjct: 119 IIVPYEKLAWEIFYQIEEEEMSFYQAAHIYDIDEQRR-----------------YHCGHE 161

Query: 235 QYLLESDLHPQF-QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNT 293
             L   +L P F  N+          P  T +G   + + +  +      L   +  +  
Sbjct: 162 GKLYRFNLKPDFSANIFAAQPKKVITPLKTDQGYHILMVEEFIEAELTPILYEEIMDRMF 221

Query: 294 PT 295
             
Sbjct: 222 QE 223


>gi|15676261|ref|NP_273395.1| hypothetical protein NMB0346 [Neisseria meningitidis MC58]
 gi|7225567|gb|AAF40789.1| hypothetical protein NMB0346 [Neisseria meningitidis MC58]
 gi|316984351|gb|EFV63325.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
 gi|325134927|gb|EGC57559.1| hypothetical protein NMBM13399_0344 [Neisseria meningitidis M13399]
 gi|325140995|gb|EGC63501.1| hypothetical protein NMBCU385_0306 [Neisseria meningitidis CU385]
 gi|325145141|gb|EGC67423.1| hypothetical protein NMBM01240013_0367 [Neisseria meningitidis
           M01-240013]
 gi|325199540|gb|ADY94995.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
          Length = 252

 Score = 37.7 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/166 (7%), Positives = 46/166 (27%), Gaps = 9/166 (5%)

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           V     + +      E     ++ + ++  E               Q     ++  + A+
Sbjct: 86  VQNRFKIAEASFYAEEYVRFLERSETVSEDELHKFYEQQIRMIKLQQVSFATEEEARQAQ 145

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTT-NPYVTQ 264
           +  L+       ++++ +           +++   L     +     ++ + T +P    
Sbjct: 146 QLLLKGLSFEGLMKRYPNDEQAFD----GFIMAQQLPEPLASQFAAMNRGDVTRDPVKLG 201

Query: 265 KGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
           +      + +     D      ++  L       K        +++
Sbjct: 202 ERYYLFKLSEVGKNPDAQPFELVRNQLEQGLRQEKARLKIDALLEE 247


>gi|159029162|emb|CAO87522.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 246

 Score = 37.7 bits (85), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/216 (9%), Positives = 47/216 (21%), Gaps = 1/216 (0%)

Query: 81  IVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAI 140
           + E+     + K G+              A  T    E  +++            + +  
Sbjct: 5   VSESEVLPLLAKYGMLPQLIREVIIEQAIANITCNPEERNAAYSRFYQNNQIANDEQMKS 64

Query: 141 QSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
                 +                   ++   N     +L            L     +  
Sbjct: 65  WLQQNGMDCEQLEYLILRDIKLEKFKQETWDNKVESYFLQVKSQLDKVVYSLIRTKNIGI 124

Query: 201 RIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKSQNNTTN 259
             +     + R        +K++      + G    +  S  HPQ  Q L          
Sbjct: 125 AQELFFRIQDRENSFAELAKKYSQGSEAETGGLLGPVELSTPHPQIGQILKASKPGQLWP 184

Query: 260 PYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT 295
           P    + V  + +        +   +  L       
Sbjct: 185 PTQVGEWVVIVRLEKYLSCELDPPTRQRLRNDLFQQ 220


>gi|319639215|ref|ZP_07993966.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Neisseria mucosa
           C102]
 gi|317399399|gb|EFV80069.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Neisseria mucosa
           C102]
          Length = 254

 Score = 37.7 bits (85), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/165 (10%), Positives = 44/165 (26%), Gaps = 6/165 (3%)

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIR-TVLFSIPDNKLQNQGFVQKRIKDAEE 207
             +   ++ N+E E  AN+  +               F     ++     V     D   
Sbjct: 85  DAEVQNQFKNVEAEFYANQYAVYLERQTAVDDAELRRFYDQQTRIIKLQQVSFASADEVR 144

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTT-NPYVTQK 265
           +   L       E+   +  +       ++    L PQ        ++ + T  P   + 
Sbjct: 145 AAQELLLKGLSFEELMKRYPNPEQKFDGFISPQQLPPQLAVAFADMTRGDVTHEPIQMEN 204

Query: 266 GVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
                 +       +      ++  ++      K+       +K+
Sbjct: 205 RFYLFKLSAVEHDPNAEPFELVRNQIAQAVKQQKVNNQIERILKE 249


>gi|225870097|ref|YP_002746044.1| foldase protein PrsA precursor [Streptococcus equi subsp. equi
           4047]
 gi|254783412|sp|C0M9L5|PRSA_STRE4 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|225699501|emb|CAW93050.1| foldase protein PrsA precursor [Streptococcus equi subsp. equi
           4047]
          Length = 333

 Score = 37.7 bits (85), Expect = 2.5,   Method: Composition-based stats.
 Identities = 38/310 (12%), Positives = 87/310 (28%), Gaps = 34/310 (10%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K       ++       ++       +    T+ G+ I+  D             N E+ 
Sbjct: 3   KSTKLLAGIVTLASAMTLAACQSTNDNTSVITMKGDTISVSDFYNETK-------NTEIS 55

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           + A+  L+V  + + +  K             + + A   G     FS+ L + G+  + 
Sbjct: 56  QRAMLNLVVSRVFEDQYGKK---VSKKRTEEAYNKSAEQYG---ASFSAALAQSGLTTDT 109

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV----REYLIRTVLFSIPD 189
           +K+ +    +    VK     +  + + +        +  T             +     
Sbjct: 110 YKRQIRSAMLVEYAVKEAAKKELTDADYKKAYESYTPEMTTQVTTLDNEETAKAVLGEVK 169

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
            +  +   + K    A + ++    D    +  A  I   S      L E D+       
Sbjct: 170 AEGADFAAIAKEKTTAADKKVDYKFDSGDTKLPADVIKAASG-----LKEGDISEVVS-- 222

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE-IALKAYLSAQNTPTKIE--KHEAEYVK 306
                    +P   Q     + +  K +   +    K  L       K +    + + + 
Sbjct: 223 -------VLDPATYQNKFYIVKVTKKAEKASDWKKYKKRLKEIVLAEKTQNIDFQNKVIA 275

Query: 307 KLRSNAIIHY 316
           K    A +  
Sbjct: 276 KALDKANVKI 285


>gi|311029962|ref|ZP_07708052.1| hypothetical protein Bm3-1_05291 [Bacillus sp. m3-13]
          Length = 252

 Score = 37.7 bits (85), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/181 (9%), Positives = 55/181 (30%), Gaps = 8/181 (4%)

Query: 40  SRIRTTINGEVITDGDISKRIALLKLQKIN-------GELEKIAVQELIVETLKKQEIEK 92
            ++   +NG+ I   + ++ +   ++  +          ++   +  LI + +  QE+E 
Sbjct: 55  EKVVAKVNGQEIKGQEYNEMLQQTQMMMMQFGQGGDAKAMKDQTLNALIDQKVLSQEVES 114

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
            G       +  +          S E F   L++  +     K  ++ +      ++ +F
Sbjct: 115 KGYKTSEKEIEDYIKDIKA-NYESEEKFEEALEESPLTMETLKAQISEELALQKYMEKEF 173

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRL 212
                  E       Q  +    ++        +  +   +      +     E+   + 
Sbjct: 174 PETKVTDEQIKEYYNQAKEQNEAQQAEAPEGEEAPANEFPELAEVEDQIRGQLEQEETQK 233

Query: 213 P 213
            
Sbjct: 234 K 234


>gi|293571240|ref|ZP_06682274.1| foldase protein PrsA [Enterococcus faecium E980]
 gi|291608647|gb|EFF37935.1| foldase protein PrsA [Enterococcus faecium E980]
          Length = 303

 Score = 37.7 bits (85), Expect = 2.5,   Method: Composition-based stats.
 Identities = 26/313 (8%), Positives = 89/313 (28%), Gaps = 44/313 (14%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +   F+ +   +   +         +   +  G  I++ ++   +  ++           
Sbjct: 1   MKKRFLALAIVLGTGLLSGCTNAGEKTAVSYKGGTISEQEVMDSLKKMQG-------ADS 53

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           AVQ+LI   + +   +K G    +  ++  + Q  +  G S +        Q     + +
Sbjct: 54  AVQQLI---VYQVFEDKYGDDVSTKEIDSQYDQTKKQLGDSFDS-------QLKSAGYTE 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           Q            +          + ++          +    +   ++    ++  ++ 
Sbjct: 104 QTFKDSIKQSLAFQEGLKKHIKLTDEDLKTAW-----ESFHPEVEAQIIQVASEDDAKDV 158

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQF--QNLLKK 252
                          +        +  ++        GK ++   +   P    +   K 
Sbjct: 159 KKAA----------DKGDDFSKLAKDKSTDTTTKEDGGKVKFDSTTTTVPAEVKEAAFKL 208

Query: 253 SQNNTTNPYVTQKG------VEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEK--HEAE 303
                ++   +            + +   ++ G ++   K  L    T TK+     + +
Sbjct: 209 KDGQVSDVITSTNASTYTTEYYVVKMMKNQNKGNDMDKYKKELKEIATDTKLSDSTFQNK 268

Query: 304 YVKKLRSNAIIHY 316
            + ++  +A +  
Sbjct: 269 VIGEVLKDANVKI 281


>gi|78777490|ref|YP_393805.1| hypothetical protein Suden_1292 [Sulfurimonas denitrificans DSM
           1251]
 gi|78498030|gb|ABB44570.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 487

 Score = 37.7 bits (85), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/243 (10%), Positives = 67/243 (27%), Gaps = 21/243 (8%)

Query: 5   VFTSLSDFIK--LLTTYFVLIIFCIVPIVSYKSWAMSSRI--RTTINGEVITDGDISKRI 60
           + T +    K  ++T +   I F     V +  ++   +      +    IT G++ K  
Sbjct: 1   MITWMQRHKKYLIITIWISTIAFVGAGFVGWGQYSYGDKAGAVAKVGSVEITMGELQKSY 60

Query: 61  ALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF- 106
           + +  Q                  L+  A+  L  + L     +   +      +     
Sbjct: 61  SNIYAQYSQMFKGEFDEEKAKSFGLQSQALNFLTQQALVLNLAKSYNLEVSDEELLKEIT 120

Query: 107 --VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK-NDFMLKYGNLEMEI 163
                 ++     + +   L K  I    ++  +  + +    +       K    ++  
Sbjct: 121 SKDYFFKDGVFDKDVYKDVLSKNNIKTKEYEADIKKELLIRKTLSLLKIQTKESEQKIID 180

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
            A     K         + +L +  ++       +Q          ++  K   K  ++ 
Sbjct: 181 TAFSIADKIDYKVLNANQIILDTSNESLKSFWEKIQNNFMSEVSYDIKYIKHDKKSNEYN 240

Query: 224 SKI 226
              
Sbjct: 241 DAA 243


>gi|295099529|emb|CBK88618.1| PPIC-type PPIASE domain. [Eubacterium cylindroides T2-87]
          Length = 339

 Score = 37.7 bits (85), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 61/228 (26%), Gaps = 22/228 (9%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSR------IRTTINGEVITDGDISKRIALLKLQKIN 69
           +    +LI F    I     + +S +      +  +I+G  +T  D+   +       + 
Sbjct: 12  VVIAVILISFIGYFIFDANRYNVSGKTMDGKEVVASIDGTDVTADDLYNELESFDSTLLY 71

Query: 70  GELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGI 129
                  + + I  T   +E        D++T+      +A++     E   +       
Sbjct: 72  NMYRNAVINQTIETTDSLRE--------DASTLESTIRTNAQSNSTDYEASLAAELASYG 123

Query: 130 GDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
             +                      K  N         +  + +        +++     
Sbjct: 124 YKSIDDLDD--------YCLTSVKEKEMNKAYVDEHFDEYKEAVESVSPRTVSIISMSVT 175

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
           +  +     QK+  + +++                +    + G   Y+
Sbjct: 176 DADELTDDEQKKKDNIDQALEDGSFADAATAFSEDETTAANDGFYGYI 223


>gi|109899789|ref|YP_663044.1| twin-arginine translocation pathway signal [Pseudoalteromonas
           atlantica T6c]
 gi|109702070|gb|ABG41990.1| Twin-arginine translocation pathway signal [Pseudoalteromonas
           atlantica T6c]
          Length = 453

 Score = 37.7 bits (85), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/249 (7%), Positives = 62/249 (24%), Gaps = 23/249 (9%)

Query: 11  DFIKLLTTYFV-LIIFCIVPIVSYKSWAMSSRIRTTING------------EVITDGDIS 57
           + +K+    F+      +  +   +S   +++   ++              + I+  +  
Sbjct: 2   NLMKITKRAFIKASAAAVASLPLSQSVFAANKPVASVEDNVATLSDITASSQPISLSERK 61

Query: 58  KRIALLKLQKINGELEKIAVQELIVETL----KKQEIEKSGITFDSNTVNYFFVQHARNT 113
            RI   +       +  + ++           +    E+          +   +      
Sbjct: 62  TRIQKAQSLMAKANIAAMILEPGAAMDYFTGIQWWRSERLTAVVIPREGDIAVLCPFFEE 121

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN---DFMLKYGNLEMEIPANKQKM 170
               E      D +   ++     L  Q +    V      F        ++   +    
Sbjct: 122 PSIRESLKVGDDVRVWQEHESPFALVKQILTDRGVDKGQLAFEHSVRYFVLDGVMSLMGN 181

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQK---RIKDAEESRLRLPKDCNKLEKFASKIH 227
              T  + + +        +++       +   R      + L L      + +  S+  
Sbjct: 182 MRHTSADPITQGCRMFKSAHEIALMHKANEITLRAYQHVYANLALGMSQQDVNQLMSRAQ 241

Query: 228 DVSIGKAQY 236
               G   +
Sbjct: 242 AQLGGSGIW 250


>gi|161870723|ref|YP_001599896.1| hypothetical protein NMCC_1796 [Neisseria meningitidis 053442]
 gi|161596276|gb|ABX73936.1| conserved hypothetical protein [Neisseria meningitidis 053442]
          Length = 289

 Score = 37.3 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/166 (6%), Positives = 45/166 (27%), Gaps = 9/166 (5%)

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           V     + +      E     ++ + ++                  Q     ++  + A+
Sbjct: 123 VQNRFKIAEASFYAEEYVRFLERSETVSESALRQFYERQIRMIKLQQVSFATEEEARQAQ 182

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTT-NPYVTQ 264
           +  L+       ++++ +           +++   L     +     ++ + T +P    
Sbjct: 183 QLLLKGLSFEGLMKRYPNDEQAFD----GFIMAQQLPEPLASQFAAMNRGDVTRDPVKLG 238

Query: 265 KGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
           +      + +     D      ++  L       K        +++
Sbjct: 239 ERYYLFKLSEVGKNPDAQPFELVRNQLEQGLRQEKARLKIDAILEE 284


>gi|118790480|ref|XP_318616.2| AGAP009594-PA [Anopheles gambiae str. PEST]
 gi|223635325|sp|Q7PK92|LRC50_ANOGA RecName: Full=Leucine-rich repeat-containing protein 50 homolog
 gi|116117965|gb|EAA43462.2| AGAP009594-PA [Anopheles gambiae str. PEST]
          Length = 910

 Score = 37.3 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 27/280 (9%), Positives = 74/280 (26%), Gaps = 27/280 (9%)

Query: 56  ISKRIALLKLQKINGELEKIAVQELIV---ETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
           I +              ++  ++ L+    E     E +   I    +  N + ++  R 
Sbjct: 470 IEQARQERFEANERSLAKEAVLERLMKGHAEVDMNIEQQMISIGGKQHNFNEYRLEVFRQ 529

Query: 113 TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
                ++    +  Q    N     +  Q             K   ++  I     ++  
Sbjct: 530 DQEKLQNLIDRVTAQKEKYNAHIDSIHDQLANIMEDYGQISEKLRKVDDMIQNIGDEVVV 589

Query: 173 ITVREYLIRTVLFSIPDNKLQNQG----FVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
              +E     V+  +    +  Q       ++   + E +        + +++ +S    
Sbjct: 590 HQEKERDGLEVIQELEPITIAEQIVENMTKEQVPDEVEANDKASDATIDPVDQLSSDESA 649

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKG------------VEYIAICDKR 276
           +       L +                 T+ P   + G             E   + + +
Sbjct: 650 I---DLGELNQHVDAQVEVGPSDPKDATTSKPIPEEFGSDPVYRKFIDIQYEIDKLTEDQ 706

Query: 277 DLGGEIALKAYLSAQNTPTKI-----EKHEAEYVKKLRSN 311
                      L  +   TK+     +++ +  ++  R N
Sbjct: 707 IFTALSEAARELQEEELETKLVHDAIDEYWSTDLEDFRRN 746


>gi|294614167|ref|ZP_06694087.1| foldase protein PrsA [Enterococcus faecium E1636]
 gi|291592943|gb|EFF24532.1| foldase protein PrsA [Enterococcus faecium E1636]
          Length = 324

 Score = 37.3 bits (84), Expect = 2.6,   Method: Composition-based stats.
 Identities = 29/312 (9%), Positives = 82/312 (26%), Gaps = 44/312 (14%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
            +  +     +  +        +++   T+ G  IT  D      L           +  
Sbjct: 4   KSIILAATSALAVLTLAACSGDTNKDIATMKGGTITVSDFYDEAKL-------ESSNQSL 56

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           VQ +I+  +      K G       V+  + + A++ G + E        Q     + K 
Sbjct: 57  VQRMIIYKV---FNNKYGDKVTDKQVDAEYDKQAKSLGDTFES-------QLEAAGYTKD 106

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
                       +          + ++          +    +   ++    +++ ++  
Sbjct: 107 TYKEYIRNNLAFEAGLKAHVDITDDDLKTAW-----KSFHPEVEAQIIKLSSEDEAKDVK 161

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKI-HDVSIGKAQYLLESDLHPQF--QNLLKKS 253
                                  +  ++        GK ++   +   P    +   K  
Sbjct: 162 KSA----------DDGDDFSKLAKDKSTDTETKEDGGKVKFDSTTTTIPAEVKEAAFKLK 211

Query: 254 QNNTTNPYVTQK------GVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKI--EKHEAEY 304
               ++   T            + +   ++ G ++   K  L    T TK+       + 
Sbjct: 212 DGEISDVITTTNPTSYATEYYVVKMVKNQNKGNDMDKYKDQLKDIATETKLSDNAFTTKV 271

Query: 305 VKKLRSNAIIHY 316
           + +   +A +  
Sbjct: 272 IGEELKDANVKI 283


>gi|307706477|ref|ZP_07643286.1| foldase protein prsA [Streptococcus mitis SK321]
 gi|307618187|gb|EFN97345.1| foldase protein prsA [Streptococcus mitis SK321]
          Length = 312

 Score = 37.3 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 36/313 (11%), Positives = 79/313 (25%), Gaps = 41/313 (13%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K L    + ++         K    +  I     G+VIT+    +++        N   +
Sbjct: 3   KKLLAGAITLLSVATLAACSKGSEGADLISMK--GDVITEHQFYEQVKS------NPSAQ 54

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           ++ +   I +  +KQ   +      ++T+     Q+  N           L+        
Sbjct: 55  QVLLNLTIQKVFEKQYGSEVDDKEVNDTIAEEEKQYGENYQRVLSQAGMTLET------- 107

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                  Q     +V+          E E+  +  K         +   ++    ++K +
Sbjct: 108 ----RKAQIRTSKLVELAVK---KAAEAELTDDAYKKAFDEYTPDVTAQIIRLDNEDKAK 160

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLK 251
                 K          +      K +         + G+  +   S   P    +    
Sbjct: 161 EILEKAKASGADFTQLAKDNSTDEKTKA--------NGGEITFDSASTEVPDQVKKAAFA 212

Query: 252 KSQNNTTNPYVT------QKGVEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEKHE--A 302
              N  ++                + +  K +    I   K  L       K        
Sbjct: 213 LDVNGISDVITATGTQAYSSQYYIVKLIKKTEKTSNIDDYKEKLKTVILTQKQNDASFVQ 272

Query: 303 EYVKKLRSNAIIH 315
             + K    A I 
Sbjct: 273 SIIGKELQAANIK 285


>gi|172056099|ref|YP_001812559.1| hypothetical protein Exig_0055 [Exiguobacterium sibiricum 255-15]
 gi|171988620|gb|ACB59542.1| hypothetical protein Exig_0055 [Exiguobacterium sibiricum 255-15]
          Length = 103

 Score = 37.3 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 18/102 (17%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVP---------IVSYKSWAMSSRIRTTINGEVITDGDI 56
           +  +  FI LL T F+   +  +          IV          +  T+  E IT  D+
Sbjct: 8   YLWMLIFI-LLLTNFMTGAYAFMGELPKVDSPKIVQDSIGGPLEDVVATVGDEEITRADL 66

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFD 98
            + +            EK  +  LI E ++KQ    S  T  
Sbjct: 67  YQTMR--------KGHEKETLDRLIREAVEKQSENGSKPTVK 100


>gi|301299775|ref|ZP_07206018.1| PPIC-type PPIASE domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852630|gb|EFK80271.1| PPIC-type PPIASE domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 206

 Score = 37.3 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/209 (11%), Positives = 60/209 (28%), Gaps = 29/209 (13%)

Query: 24  IFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVE 83
           +  I  IV     A  S+   T +G  IT+ +    +             K  +Q++I+ 
Sbjct: 6   LVAISGIVLTFGLAACSKTVATTSGGKITESEYYSSMK-------KTSSGKQVLQQMILN 58

Query: 84  TLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSI 143
            + ++E          N                 + + S  D     ++  K     +  
Sbjct: 59  KVLEKEYGSKVSDKKVN----------EQYNTYKKQYGSSFDSVLAQNDMTKSSFKQEIR 108

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
              ++K          + ++ A  ++ +                  + L ++    + I 
Sbjct: 109 SNLLLKEAVKDNTKITDKQLKAQWKEYEPK------------VTVAHILVSKKSTAEDII 156

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSIG 232
           +  +            +K+++     + G
Sbjct: 157 NKLKEDGSYANFKKLAKKYSTDSSTKNDG 185


>gi|326564633|gb|EGE14851.1| signal peptide peptidase SppA [Moraxella catarrhalis 46P47B1]
 gi|326565450|gb|EGE15621.1| signal peptide peptidase SppA [Moraxella catarrhalis 12P80B1]
 gi|326575606|gb|EGE25530.1| signal peptide peptidase SppA [Moraxella catarrhalis O35E]
          Length = 342

 Score = 37.3 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRI------RTT--INGEVITDGDIS-KRI 60
           S F+KLLT  F++    ++        +   RI           +NG ++T+GD++ + I
Sbjct: 50  SVFLKLLTFAFLVFFIIVLGFGCSGFGSSFERIGINEPHIAIIDVNGAIMTNGDVNAQNI 109

Query: 61  ALLKLQKINGELEKIAV 77
               ++       K  V
Sbjct: 110 NDSLMEAFENNQAKAVV 126


>gi|225868897|ref|YP_002744845.1| foldase protein PrsA precursor [Streptococcus equi subsp.
           zooepidemicus]
 gi|259534750|sp|C0MCT3|PRSA_STRS7 RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|225702173|emb|CAW99882.1| foldase protein PrsA precursor [Streptococcus equi subsp.
           zooepidemicus]
          Length = 333

 Score = 37.3 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 31/306 (10%), Positives = 77/306 (25%), Gaps = 26/306 (8%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K       ++       ++       +    T+ G+ I+  D                 +
Sbjct: 3   KSTKLLAGIVTLASAMTLAACQSTNDNTSVITMKGDTISVSDFYNETK------NTEVSQ 56

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           +  +  ++    + Q  +K          N    Q+  +   +        D        
Sbjct: 57  RAMLNLVVSRVFEDQYGKKVSKKKTEEAYNKSAEQYGASFSAALAQSGLTTDTY---KRQ 113

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
            +  + ++    +  K +          E    +   + IT+        +      +  
Sbjct: 114 IRSAMLVEYAVKEAAKKELTDADYKKAYESYTPEMTTQVITLDNEETAKAILGEVKAEGA 173

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKS 253
           +   + K    A + ++    D    +  A  I   S      L E D+           
Sbjct: 174 DFAAIAKEKTTAADKKVDYKFDSGDTKLPADVIKAASG-----LKEGDISEVVS------ 222

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGE-IALKAYLSAQNTPTKIE--KHEAEYVKKLRS 310
                +P   Q     + +  K +   +    K  L       K +    + + + K   
Sbjct: 223 ---VLDPATYQNKFYIVKVTKKAEKASDWKKYKKRLKEIVLAEKTQNIDFQNKVIAKALD 279

Query: 311 NAIIHY 316
            A +  
Sbjct: 280 KANVKI 285


>gi|307704713|ref|ZP_07641612.1| foldase protein prsA [Streptococcus mitis SK597]
 gi|307621760|gb|EFO00798.1| foldase protein prsA [Streptococcus mitis SK597]
          Length = 312

 Score = 37.3 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 38/314 (12%), Positives = 82/314 (26%), Gaps = 43/314 (13%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K L    + ++         K    +  I     G+VIT+    +++        N   +
Sbjct: 3   KKLLAGAITLLSVATLAACSKGSEGADLISMK--GDVITEHQFYEQVKS------NPSAQ 54

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           ++ +   I +  +KQ   +      ++T+     Q+  N           L+        
Sbjct: 55  QVLLNLTIQKVFEKQYGSEVDDKEVNDTIAEEEKQYGENYQRVLSQAGMTLET------- 107

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                  Q     +V+          E E+  +  K         +   ++    ++K +
Sbjct: 108 ----RKAQIRTSKLVELAVK---KAAEAELTDDAYKKAFDEYTPDVTAQIIRLDNEDKAK 160

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF--QNLLK 251
                 K          +      K +         + G+  +   S   P+   +    
Sbjct: 161 EVLEKAKAEGADFAQLAKDNSTDEKTKA--------NGGEITFDSASTEVPEQVKKAAFA 212

Query: 252 KSQNNTTNPYVTQKG-------VEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEK--HE 301
              N  ++   T  G          + +  K +    I   K  L       K       
Sbjct: 213 LDVNGVSDVI-TAAGTQAYSSQYYIVKLIKKTEKSSNIDDYKEKLKTVILTQKQNDSTFV 271

Query: 302 AEYVKKLRSNAIIH 315
              + K    A I 
Sbjct: 272 QSIIGKELQAANIK 285


>gi|302551954|ref|ZP_07304296.1| lipoprotein [Streptomyces viridochromogenes DSM 40736]
 gi|302469572|gb|EFL32665.1| lipoprotein [Streptomyces viridochromogenes DSM 40736]
          Length = 215

 Score = 37.3 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 42/123 (34%), Gaps = 15/123 (12%)

Query: 43  RTTINGEVITDGDISKRI---------------ALLKLQKINGELEKIAVQELIVETLKK 87
              + G+ IT   + +R+                  +     G L +  +  ++++ +  
Sbjct: 34  AAVVGGQRITVSQLEERVGEVRAAQRAAVQNDAQYQQAIARTGTLTRDTLHTMVLDRVLH 93

Query: 88  QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDV 147
           +  E +G+T     +           G +    +++L + GI     ++ L +Q     +
Sbjct: 94  RAAENAGVTVTRREMQEMRSGLEEQAGGAKALETTWLQQYGIPPQRLEENLRLQLEAQKL 153

Query: 148 VKN 150
            + 
Sbjct: 154 AEK 156


>gi|261289621|ref|XP_002604787.1| hypothetical protein BRAFLDRAFT_119476 [Branchiostoma floridae]
 gi|229290115|gb|EEN60797.1| hypothetical protein BRAFLDRAFT_119476 [Branchiostoma floridae]
          Length = 671

 Score = 37.3 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/279 (8%), Positives = 73/279 (26%), Gaps = 21/279 (7%)

Query: 51  ITDGDISKRIALLKLQKINGELEKIAVQE-LIVETLKKQEIEKSGITFDSNTVNYFFVQ- 108
           I D D+ +     +L  +  +     + E LI +               +          
Sbjct: 169 ILDTDVFRLPPNDQLDDLPSDWLNGLLDEPLIPDKPLNDVSLAPPPQIQAEHSYSMMSAA 228

Query: 109 ---HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
                 +  +  E+    +       +     +    +  D+    + +      +++  
Sbjct: 229 DLAMEESLRIKTEENDFDMADWMTSGHMDHGMMHDDPMDYDMGNTAYHMAEQMEPLDLIK 288

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEK--FA 223
            K +  +  +  +     L         +          +  +    P      ++   +
Sbjct: 289 IKTEPTDPDLYFHTGADDLDVQMPPTPPSSASSDSEGGSSPRAIPDSPTRPTFSKQAGQS 348

Query: 224 SKIHDVSIGKAQYLLESDLHP--QFQNLLKKSQNNTTN--PYVTQKGVEYIAI-CDKRDL 278
           S     + G+        L P        ++ +   +   P  T        +   K + 
Sbjct: 349 SGPMSPNPGQNLLTNFQKLPPSGPLILTEEEKRTLISEGYPIPT-------KLPLTKAEE 401

Query: 279 GGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
                ++  +  + +  +  + + EYV +L     +  +
Sbjct: 402 KSLKKVRRKIKNKISAQESRRKKKEYVDQLEKR--VENF 438


>gi|323485490|ref|ZP_08090836.1| hypothetical protein HMPREF9474_02587 [Clostridium symbiosum
           WAL-14163]
 gi|323401138|gb|EGA93490.1| hypothetical protein HMPREF9474_02587 [Clostridium symbiosum
           WAL-14163]
          Length = 332

 Score = 37.3 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/122 (9%), Positives = 24/122 (19%), Gaps = 6/122 (4%)

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ 254
           Q     R      S     ++ +  +  +      +  +     ES            S 
Sbjct: 186 QAETADRQAAENLSLAAAQENADFEKCASDAGLSATTRQLGRKEESQ--EFEDAAFALSA 243

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              +    +      I          +    A         +  K   E     R    +
Sbjct: 244 GQVSQVIESNGTYYVIKCIS----DYDEEATAARKKIIFEERKRKAFKEIYDSFREGINL 299

Query: 315 HY 316
            Y
Sbjct: 300 TY 301


>gi|307637665|gb|ADN80115.1| Peptidyl-prolyl cis-trans isomerase [Helicobacter pylori 908]
 gi|325996265|gb|ADZ51670.1| Peptidyl-prolyl cis-trans isomerase [Helicobacter pylori 2018]
 gi|325997854|gb|ADZ50062.1| putative peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori
           2017]
          Length = 487

 Score = 37.3 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 35/317 (11%), Positives = 88/317 (27%), Gaps = 21/317 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +    +  I   +      S+++ S     +    I+  ++++  
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEY 60

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             LK        +    +EL  + +K   +EKS    DS          A + GL A   
Sbjct: 61  RRLKDAYAESIPD---FKELTEDQIKAMHLEKSA--LDSLINQALLRNLALDLGLGATKQ 115

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
               + +             +     + ++ +  K+    +E     QK+  +  +    
Sbjct: 116 EVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTP 175

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
                     KLQ++  +     +  +       + K      K   K          + 
Sbjct: 176 LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEEMKKYYENHRKDFKKPTSFKTHSLYFD 235

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
              +     +      +N  +             +  +  L    +++  +    +  K 
Sbjct: 236 ASLEKPDLKELEEYYHKNKVS------------YLDKEGKLQDFKSVQEQVKHDLSMQKA 283

Query: 298 EK-HEAEYVKKLRSNAI 313
            +     Y+   + NA 
Sbjct: 284 NEKALRSYIALKKGNAK 300


>gi|257886569|ref|ZP_05666222.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,141,733]
 gi|257822623|gb|EEV49555.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,141,733]
          Length = 303

 Score = 37.3 bits (84), Expect = 2.8,   Method: Composition-based stats.
 Identities = 26/313 (8%), Positives = 87/313 (27%), Gaps = 44/313 (14%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +   F+ +   +   +         +   +  G  I++ ++   +  ++           
Sbjct: 1   MKKKFLALAIVLGAGLLSGCTNAGEKTAVSYKGGTISEQEVMDSLKKMQG-------ADS 53

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            VQ+LI   + +   +K G    +  V+  + Q  +  G S +        Q     + +
Sbjct: 54  TVQQLI---VYQVFEDKYGDDVSTKEVDSQYDQTKKQLGDSFDS-------QLKTAGYTE 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +            +          + ++    +              ++    +N  ++ 
Sbjct: 104 ETFKDSIKQSLAFQEGLKKHIKLTDEDLKTAWKTFHPEVE-----AQIIQVASENDAKDV 158

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQF--QNLLKK 252
                          +        +  ++        GK ++   +   P    +   K 
Sbjct: 159 KKAA----------DKGDDFSKLAKDKSTDTTTKEDGGKVKFDSTTTTVPTEVKEAAFKL 208

Query: 253 SQNNTTNPYVTQKG------VEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEK--HEAE 303
                ++   +            + +   ++ G ++   K  L    T TK+     + +
Sbjct: 209 KDGQVSDVITSTNTSTYATEYYVVKMVKNQNKGNDMDKYKKELKEIATDTKLSDSTFQNK 268

Query: 304 YVKKLRSNAIIHY 316
            + ++  +A +  
Sbjct: 269 VISEVLKDANVKI 281


>gi|145532789|ref|XP_001452150.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124419827|emb|CAK84753.1| unnamed protein product [Paramecium tetraurelia]
          Length = 480

 Score = 37.3 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 47/169 (27%), Gaps = 1/169 (0%)

Query: 43  RTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTV 102
              ++ +V+T+ DI      +    I     K+ ++ L+      +        FD    
Sbjct: 51  VVIVDSKVVTESDIENNF-FIPHDTIGQSRAKVVLEYLLEMNQDVKGEWHQVENFDVKEQ 109

Query: 103 NYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
           +Y  +          +     L   G+             I    +   + L+  N   E
Sbjct: 110 HYDLIIANEQRFSETKFNLIELQTYGLVGRMRLYSPKCHIIETKPMNQKYDLRIFNPFQE 169

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLR 211
           +      ++     +YL       I    LQ     + +       + +
Sbjct: 170 LKEYFDSIEFEGDVDYLSHIPYIVILYKALQKYHKEKGKYPSTFSEKHK 218


>gi|255656246|ref|ZP_05401655.1| putative protein export chaperone [Clostridium difficile QCD-23m63]
          Length = 253

 Score = 37.3 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/175 (11%), Positives = 51/175 (29%), Gaps = 4/175 (2%)

Query: 30  IVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQE----LIVETL 85
           + +      SS +  TI  + IT   + KR+  L        +    ++     +I   +
Sbjct: 78  LPATSKHYNSSEVVATIGDKKITGEMLRKRMEPLFYLNAKTTMTDDEIRSYESNMIETMI 137

Query: 86  KKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWP 145
               +         +  N        N   S E       ++ +      +      +  
Sbjct: 138 TSDILSSEAAKEKISITNDQLDAQYNNLMSSIESAMGMTKEEFLKQFDLTEKYIKDDMKK 197

Query: 146 DVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQK 200
           ++V + ++ +   +  +   N          +     +L    D+K +     +K
Sbjct: 198 ELVASKYLNEKSKVTDKEAENYYNKNKNNYLQVRASHILIKTVDDKGKQVSNSKK 252


>gi|183221208|ref|YP_001839204.1| hypothetical protein LEPBI_I1822 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911299|ref|YP_001962854.1| cytoplasmic membrane lipoprotein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775975|gb|ABZ94276.1| Cytoplasmic membrane lipoprotein, LipL31 [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779630|gb|ABZ97928.1| LipL31; putative signal peptide [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 225

 Score = 37.3 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 43/144 (29%), Gaps = 3/144 (2%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIAL-LKLQKINGELEKIAVQE 79
           +L +F  +   +    + SS +  T++   IT  D        L        +EK  + E
Sbjct: 4   ILPLFVFLASFALVQCSDSSPVIETLDNHKITVKDFEAAYDTALDSISRLQNIEKKTLLE 63

Query: 80  LIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA 139
            I +     E+  +    +       F Q  R   ++                   + + 
Sbjct: 64  FIEKD--INEVPPNFQDLNYQLQKKNFYQTYRQMIMTRLVAEKNGYISRPDVAEVIKQVE 121

Query: 140 IQSIWPDVVKNDFMLKYGNLEMEI 163
           +Q+I    V      K    E + 
Sbjct: 122 MQTIAQMYVSEQVEKKIQITEEQA 145


>gi|315638232|ref|ZP_07893414.1| peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter
           upsaliensis JV21]
 gi|315481768|gb|EFU72390.1| peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter
           upsaliensis JV21]
          Length = 501

 Score = 37.3 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 61/231 (26%), Gaps = 18/231 (7%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL--------- 63
           + +  +    +   +V   +Y      +     +  E I+  + + R   +         
Sbjct: 14  VTIWISVIAFVGAGVVGWGAYDYNQNRNSSVAIVGNEKISFVEFNLRYNQIYGYYNQISN 73

Query: 64  ----KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
               +       L+ IA+  LI + L     +  G+  + N V            ++   
Sbjct: 74  GALSEENAEKLGLKDIALNSLIEDKLLLNFAKNLGLWANENEVIQELSAAEEFQNVNGIF 133

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN-----DFMLKYGNLEMEIPANKQKMKNIT 174
             +        +N   +          ++       +F  K   L+M   +   +     
Sbjct: 134 DKNIYYAILKQNNILSKNYEQILGDRIILNKLNKIFEFPAKENELQMLAASYFMQDALEI 193

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
            +    +  L    +   Q     +   K  +   L       K   F+  
Sbjct: 194 AKITFDKKDLAVDENALKQLWEAHKNDFKTQKSYELSSYFIEAKKSNFSQD 244


>gi|257897789|ref|ZP_05677442.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           Com15]
 gi|257835701|gb|EEV60775.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           Com15]
          Length = 303

 Score = 37.3 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 27/312 (8%), Positives = 85/312 (27%), Gaps = 44/312 (14%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +   F+ +   +   +         +   +  G  I++ ++   +  ++           
Sbjct: 1   MKKRFLALAIVLGAGLLSGCTNAGEKTAVSYKGGTISEQEVMDSLKKMQG-------ADS 53

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            VQ+LI   + +   +K G    +  V+  + Q  +  G S +        Q       K
Sbjct: 54  TVQQLI---VYQVFEDKYGDDVSTKEVDSQYDQTKKQLGDSFDS-------QLKTAGLTK 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +            +          + ++    +              ++    +N  ++ 
Sbjct: 104 ETFKDSIKQRLAFQEGLKKHIKLTDEDLKTAWKTFHPEVE-----AQIIQVASENDAKDV 158

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQF--QNLLKK 252
                          +        +  ++        GK ++   +   P    +   K 
Sbjct: 159 KKAA----------DKGDDFSKLAKDKSTDTTTKEDGGKVKFDSTTTTVPTEVKEAAFKL 208

Query: 253 SQNNTTNPYVTQKG------VEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEK--HEAE 303
                ++   +            + +   ++ G ++   K  L    T TK+       +
Sbjct: 209 KDGQVSDVITSTNTSTYATEYYVVKMVKNQNKGNDMDKYKKELKEIATETKLNDSTFRNK 268

Query: 304 YVKKLRSNAIIH 315
            + ++  +A + 
Sbjct: 269 VIGEVLKDANVK 280


>gi|296113528|ref|YP_003627466.1| signal peptide peptidase SppA [Moraxella catarrhalis RH4]
 gi|295921222|gb|ADG61573.1| signal peptide peptidase SppA [Moraxella catarrhalis RH4]
 gi|326559531|gb|EGE09945.1| signal peptide peptidase SppA [Moraxella catarrhalis 7169]
 gi|326562731|gb|EGE13033.1| signal peptide peptidase SppA [Moraxella catarrhalis 103P14B1]
 gi|326567786|gb|EGE17892.1| signal peptide peptidase SppA [Moraxella catarrhalis BC1]
 gi|326568577|gb|EGE18648.1| signal peptide peptidase SppA [Moraxella catarrhalis BC7]
 gi|326568702|gb|EGE18772.1| signal peptide peptidase SppA [Moraxella catarrhalis BC8]
 gi|326572571|gb|EGE22560.1| signal peptide peptidase SppA [Moraxella catarrhalis CO72]
 gi|326574167|gb|EGE24115.1| signal peptide peptidase SppA [Moraxella catarrhalis 101P30B1]
          Length = 342

 Score = 37.3 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRI------RTT--INGEVITDGDIS-KRI 60
           S F+KLLT  F++    ++        +   RI           +NG ++T+GD++ + I
Sbjct: 50  SVFLKLLTFAFLVFFIIVLGFGCSGFGSSFERIGINEPHIAIIDVNGAIMTNGDVNAQNI 109

Query: 61  ALLKLQKINGELEKIAV 77
               ++       K  V
Sbjct: 110 NDSLMEAFENNQAKAVV 126


>gi|298490129|ref|YP_003720306.1| hypothetical protein Aazo_0730 ['Nostoc azollae' 0708]
 gi|298232047|gb|ADI63183.1| conserved hypothetical protein ['Nostoc azollae' 0708]
          Length = 261

 Score = 37.3 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/225 (7%), Positives = 60/225 (26%), Gaps = 13/225 (5%)

Query: 79  ELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL 138
            L+     ++ I  + +            Q A +  L+ +   +      +  ++     
Sbjct: 24  NLLEAVATRRTIVDTAVQEGIQIEIQELQQAADSLRLANKLIKAEDTWAWLEKHYLSLDN 83

Query: 139 AIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV 198
             +    +++           ++E      ++       Y +             ++   
Sbjct: 84  FEEIAQLNLLSAKLANHLFADKVEPFFYAHQLDYTGAVTYEVIL----------DDEDLA 133

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKK-SQNNT 257
            +     +E  +   +   +    A        G       +D  P+  + +   +    
Sbjct: 134 LEIFYSLQEGEISFQEIARQYIDNAEIRRA--GGYQGIRKRNDFRPEIASAIFAANPPQI 191

Query: 258 TNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEA 302
             P +T KG   I + +         ++  +  +     +++   
Sbjct: 192 LKPIITPKGAHIIMVEEIIKPQLNEQMRLKIMGELFTNWLKQQVN 236


>gi|195977800|ref|YP_002123044.1| foldase protein PrsA [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|226712006|sp|B4U214|PRSA_STREM RecName: Full=Foldase protein prsA; Flags: Precursor
 gi|195974505|gb|ACG62031.1| foldase protein PrsA precursor [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 333

 Score = 37.3 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 36/310 (11%), Positives = 86/310 (27%), Gaps = 34/310 (10%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
           K       ++       ++       +    T+ G+ I+  D             N E+ 
Sbjct: 3   KSTKLLAGIVTLASAMTLAACQSTNDNTSVITMKGDTISVSDFYNETK-------NTEIS 55

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
           + A+  L+V  + + +  K      +           ++       FS+ L + G+  + 
Sbjct: 56  QRAMLNLVVSRVFEDQYGKKVSKKKTEEAYN------KSAEQYGASFSAALAQSGLTTDT 109

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV----REYLIRTVLFSIPD 189
           +K+ +    +    VK     +  + + +        +  T             +     
Sbjct: 110 YKRQIRSAMLVEYAVKEAAKKELTDADYKKAYESYTPEMTTQVITLDNEETAKAILGEVK 169

Query: 190 NKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNL 249
            +  +   + K    A + ++    D    +  A  I   S      L E D+       
Sbjct: 170 AEGADFAAIAKEKTTAADKKVDYKFDSGDTKLPADVIKAASG-----LKEGDISEVVS-- 222

Query: 250 LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE-IALKAYLSAQNTPTKIE--KHEAEYVK 306
                    +P   Q     + +  K +   +    K  L       K +    + + + 
Sbjct: 223 -------VLDPATYQNKFYIVKVTKKAEKASDWKKYKKRLKEIVLAEKTQNIDFQNKVIA 275

Query: 307 KLRSNAIIHY 316
           K    A +  
Sbjct: 276 KALDKANVKI 285


>gi|189183869|ref|YP_001937654.1| protein export protein PrsA precursor [Orientia tsutsugamushi str.
           Ikeda]
 gi|189180640|dbj|BAG40420.1| protein export protein PrsA precursor [Orientia tsutsugamushi str.
           Ikeda]
          Length = 343

 Score = 37.3 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/209 (8%), Positives = 53/209 (25%), Gaps = 13/209 (6%)

Query: 111 RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKM 170
                S +     ++         +Q   +        +    +   +L +++   K   
Sbjct: 79  SFYSYSLQQQQDLIEAYVTDKLLEEQVKKLNVENDLTFQEALKVLKRSLAVQVLLKKNVP 138

Query: 171 KNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS 230
                     +    S            Q++ K+ ++   +        ++ +       
Sbjct: 139 ALKEDEYPFYQKQFASEKVKISHILLNSQEKAKEVKDKLSKGESFEKLAKEESLDKETKE 198

Query: 231 IGKAQ--YLLESDLHPQFQNLLKKSQNNTTNPYV-TQKGVEYIAICDKRDLGGEIALKAY 287
            G     +  + DL           +   + P   ++   + I +  K      I  K  
Sbjct: 199 NGGLVEHWFFQGDLPESI---FAMQEGGVSEPMQLSKTAWQLIKLNSK---VPHIPSKEE 252

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNAIIHY 316
           ++      +      +Y + L   A +  
Sbjct: 253 INEYTFNIR----VKKYARDLYDAANVKI 277


>gi|108563383|ref|YP_627699.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori HPAG1]
 gi|107837156|gb|ABF85025.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori HPAG1]
          Length = 487

 Score = 37.3 bits (84), Expect = 3.1,   Method: Composition-based stats.
 Identities = 31/327 (9%), Positives = 82/327 (25%), Gaps = 48/327 (14%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +    +  I   +      ++++ S     +    I+  ++++  
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYNFSLDSDSAAKVGQIKISQEELAQEY 60

Query: 61  ALL---------------KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
             L               K Q     LEK A+  LI + L +      G+      V   
Sbjct: 61  RRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAKE 120

Query: 106 FVQH--ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEI 163
             +    +  G+  E+    + KQ        +    + +    +   F      LE   
Sbjct: 121 IRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTPLEQSS 180

Query: 164 PANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA 223
            +   K+++                     +   +         +   + K     +K  
Sbjct: 181 LSLWAKLQDKL-------------------DILILNPSDVKISLNEEEMKKYYESHKKDF 221

Query: 224 SKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIA 283
            K          +    +     +      +N  +             +  +  L    +
Sbjct: 222 KKPTSFKTRSLYFDASLEKPDLKELEEYYHKNKVS------------YLDKEGKLQDFKS 269

Query: 284 LKAYLSAQNTPTKIEKHEAEYVKKLRS 310
           ++  +    +  K  +        L+ 
Sbjct: 270 VQEQVKHDLSMQKANEKALRSYIALKK 296


>gi|315931795|gb|EFV10750.1| Peptidylprolyl isomerase [Campylobacter jejuni subsp. jejuni 327]
          Length = 80

 Score = 37.3 bits (84), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 4/79 (5%)

Query: 242 LHPQFQNLLKKSQNNT--TNPYVTQKGVEYIAICD--KRDLGGEIALKAYLSAQNTPTKI 297
           +   F +     +N T  T P  T  G   I   +   +       +K  +       + 
Sbjct: 1   MVKPFTDAAFALKNGTITTTPVKTNFGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEF 60

Query: 298 EKHEAEYVKKLRSNAIIHY 316
           +K   +  + L ++A + Y
Sbjct: 61  KKVINQKGQDLLNSAKVEY 79


>gi|325300048|ref|YP_004259965.1| peptidyl-prolyl cis-trans isomerase [Bacteroides salanitronis DSM
           18170]
 gi|324319601|gb|ADY37492.1| peptidyl-prolyl cis-trans isomerase [Bacteroides salanitronis DSM
           18170]
          Length = 404

 Score = 37.3 bits (84), Expect = 3.2,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 236 YLLESDLHPQFQNL-LKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
           +   + L  +F +   +  +   T P+++  GV  I + D++          YL
Sbjct: 141 WRPVAGLLQEFSSRLERLEKGTYTTPFLSPLGVHIIRLADRKPAVSYEEAYPYL 194


>gi|158337133|ref|YP_001518308.1| hypothetical protein AM1_4008 [Acaryochloris marina MBIC11017]
 gi|158307374|gb|ABW28991.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 234

 Score = 37.3 bits (84), Expect = 3.2,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 61/244 (25%), Gaps = 20/244 (8%)

Query: 62  LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
           +L+  K N  L ++  Q L  + + +    ++         N             A D  
Sbjct: 1   MLEALKQNMSLVEVCEQILKQKIILQTADSQNITVTPEEIQNEVDEIRRNKHLEKASDTM 60

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
           ++L++Q I  + ++  +    +   + K+ F  +      E   N  +     +      
Sbjct: 61  AWLNEQMITPDEWEIVIQNHVLTKKLAKHLFEEQVEPFFAERRLNFDRFVVYQISLDCQN 120

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD 241
                    + +   F +       +   R                    G         
Sbjct: 121 LAQELFYQIEEEEISFYEAARLYNLDESARYL-----------------CGYTGQKNRLS 163

Query: 242 LHPQFQNLLKKSQ---NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIE 298
             P     + +          P  T+     + I +   +     L+  +        I 
Sbjct: 164 FSPDIAAAIFQDPLPIGILIGPLQTEDVYHLLRIEEHIPVELTPELRQEILHSLFDEWIN 223

Query: 299 KHEA 302
           K   
Sbjct: 224 KEIE 227


>gi|306844003|ref|ZP_07476598.1| rotamase family protein [Brucella sp. BO1]
 gi|306275758|gb|EFM57482.1| rotamase family protein [Brucella sp. BO1]
          Length = 628

 Score = 37.3 bits (84), Expect = 3.2,   Method: Composition-based stats.
 Identities = 25/263 (9%), Positives = 63/263 (23%), Gaps = 12/263 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD----I 56
           M   + ++   +I  L    +++ F I  I       M+     T     ++  D     
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            +++  L  Q       + A    +   +  Q      +   +  +     Q A     +
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            +                           D ++N   +      +E   +  K+ +  ++
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
              +        D               +E+            E            K  Y
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAY------FEAHKEDYKAPEYRKISY 234

Query: 237 LLESDLHPQFQNLLKKSQNNTTN 259
           +          +    +Q+  + 
Sbjct: 235 VKLE--PSDIADPAAVTQDEISE 255


>gi|224436614|ref|ZP_03657623.1| hypothetical protein HcinC1_01640 [Helicobacter cinaedi CCUG 18818]
 gi|313143113|ref|ZP_07805306.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313128144|gb|EFR45761.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 492

 Score = 37.3 bits (84), Expect = 3.2,   Method: Composition-based stats.
 Identities = 38/387 (9%), Positives = 97/387 (25%), Gaps = 87/387 (22%)

Query: 7   TSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL--- 63
                 + +  +    I   +V   SY   + + +    +    I   +  +  A +   
Sbjct: 4   HKKWLIVTIWVSAIAFIGAGMVNWGSYGFGSSNDK-VARVGDIDIHLAEFQREYARILNE 62

Query: 64  ------------KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA- 110
                       + Q     + ++A+Q LI +          G+      V    V    
Sbjct: 63  FSQISQFGGMLDEAQAKQFGIPQMALQRLIQQVQILNLANDLGLVVSDKEVGEEIVNAKV 122

Query: 111 ---RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK------------------ 149
                   S E +   L +QG+  + F++ +        +                    
Sbjct: 123 YVDDKGEFSQEVYRKALKEQGMSPSEFEEMVRKILTTQKLFSVMNITQVGPMLPISSSEM 182

Query: 150 --------------------NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPD 189
                               +   ++  + E++    K      +  E+ I  +L     
Sbjct: 183 AALEMANAVRDRLRVEILPMDKVNIEIEDDELKAFWEKNAENWKSPMEFKIEYILVPFAS 242

Query: 190 NKLQNQGFV--------------------QKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
               ++                       ++  +   +   ++  +     ++    +  
Sbjct: 243 QNPTDEDLTKHYQDFKSDYLDENGNLLSFEESKEKLIKDVQKIQAESVAKREYRDLKNKS 302

Query: 230 SIGKAQYLLESD-------LHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRD--LGG 280
             G+   L E++       +    +++          P    KG   + I DK+      
Sbjct: 303 KKGEILSLKENERFFVKNGVDLVIEDMKVAQVGQVLKPIEVDKGFVTLRILDKKPSVQKS 362

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKK 307
               KA        +K  +      K+
Sbjct: 363 FEEAKAEAKVLFESSKKREKLLALAKE 389


>gi|254706677|ref|ZP_05168505.1| rotamase family protein [Brucella pinnipedialis M163/99/10]
 gi|261314138|ref|ZP_05953335.1| rotamase [Brucella pinnipedialis M163/99/10]
 gi|261303164|gb|EEY06661.1| rotamase [Brucella pinnipedialis M163/99/10]
          Length = 628

 Score = 37.3 bits (84), Expect = 3.3,   Method: Composition-based stats.
 Identities = 25/263 (9%), Positives = 63/263 (23%), Gaps = 12/263 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD----I 56
           M   + ++   +I  L    +++ F I  I       M+     T     ++  D     
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            +++  L  Q       + A    +   +  Q      +   +  +     Q A     +
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            +                           D ++N   +      +E   +  K+ +  ++
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
              +        D               +E+            E            K  Y
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAY------FEAHKEDYKAPEYRKISY 234

Query: 237 LLESDLHPQFQNLLKKSQNNTTN 259
           +          +    +Q+  + 
Sbjct: 235 VKLE--PSDIADPAAVTQDEISE 255


>gi|301166902|emb|CBW26481.1| hypothetical protein BMS_1638 [Bacteriovorax marinus SJ]
          Length = 502

 Score = 37.3 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/207 (11%), Positives = 57/207 (27%), Gaps = 2/207 (0%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K + T   L      P  S +   + +   T++  EVIT+ D+ + I   ++      +
Sbjct: 1   MKRIATLICLTGILASPFTSAREKELIAWKVTSVGNEVITNYDVDQFIEHTQISDSLKTI 60

Query: 73  --EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
             ++        + LK +  +K+        +    +Q        ++  +  + +    
Sbjct: 61  LFKRANKNYSEYQKLKSEIAKKNFNKSAGQLIYAHMMQKDHQRKHGSKRVAFKVTEDTFY 120

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
                    +     D        +    E  I          +  +   R         
Sbjct: 121 KAIQDNETKVLRHLLDTGIGIVKSREQFGEFLISQAYPHQSGESATDVYWRWYEDQKARI 180

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCN 217
           K +      K  +     R +     +
Sbjct: 181 KTELFLKEVKNYEAYIALRNQKYYHTD 207


>gi|254714212|ref|ZP_05176023.1| rotamase family protein [Brucella ceti M644/93/1]
 gi|254717648|ref|ZP_05179459.1| rotamase family protein [Brucella ceti M13/05/1]
 gi|261219487|ref|ZP_05933768.1| rotamase [Brucella ceti M13/05/1]
 gi|261321982|ref|ZP_05961179.1| rotamase [Brucella ceti M644/93/1]
 gi|260924576|gb|EEX91144.1| rotamase [Brucella ceti M13/05/1]
 gi|261294672|gb|EEX98168.1| rotamase [Brucella ceti M644/93/1]
          Length = 628

 Score = 37.3 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 25/263 (9%), Positives = 63/263 (23%), Gaps = 12/263 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD----I 56
           M   + ++   +I  L    +++ F I  I       M+     T     ++  D     
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            +++  L  Q       + A    +   +  Q      +   +  +     Q A     +
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLNEAARNMQLGLSQDAIARLTA 120

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            +                           D ++N   +      +E   +  K+ +  ++
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
              +        D               +E+            E            K  Y
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAY------FEAHKEDYKAPEYRKISY 234

Query: 237 LLESDLHPQFQNLLKKSQNNTTN 259
           +          +    +Q+  + 
Sbjct: 235 VKLE--PSDIADPAAVTQDEISE 255


>gi|121635518|ref|YP_975763.1| hypothetical protein NMC1824 [Neisseria meningitidis FAM18]
 gi|120867224|emb|CAM10993.1| hypothetical protein NMC1824 [Neisseria meningitidis FAM18]
          Length = 239

 Score = 37.3 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/166 (7%), Positives = 45/166 (27%), Gaps = 9/166 (5%)

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           V     + +      E     ++ + ++                  Q     ++  + A+
Sbjct: 73  VQNRFKIAEASFYAEEYVRFLERSETVSESALRQFYERQIRMIKLQQVSFATEEEARQAQ 132

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTT-NPYVTQ 264
           +  L+       ++++ +           +++   L     +     ++ + T NP    
Sbjct: 133 QLLLKGLSFEGLMKRYPNDEQAFD----GFIMAQQLPEPLASQFAAMNRGDVTRNPVKLG 188

Query: 265 KGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
           +      + +     D      ++  L       K        +++
Sbjct: 189 ERYYLFKLSEVGKNPDAQPFELVRNQLEQGLRQEKARLKIDALLEE 234


>gi|170017429|ref|YP_001728348.1| parvulin-like peptidyl-prolyl isomerase [Leuconostoc citreum KM20]
 gi|169804286|gb|ACA82904.1| Parvulin-like peptidyl-prolyl isomerase [Leuconostoc citreum KM20]
          Length = 303

 Score = 37.0 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 35/301 (11%), Positives = 85/301 (28%), Gaps = 35/301 (11%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +  +   +I  I           SS+   T +   IT+ +    +             + 
Sbjct: 1   MRKFIWGLIIVIFGGGLIYLGFNSSKTLMTSDSGKITEKEFVADLK-------QSPAGQQ 53

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
               L++  +     ++ G     + V   F       G   + F S L      ++ FK
Sbjct: 54  EFANLVINKVLA---KQYGGNVSKSDVQNAFDTQKAQYG---DSFQSVLSSNNTNESQFK 107

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
             +    I    VK ++ +    +E       Q      +      +   +I   K  + 
Sbjct: 108 NNIKNNLIMKAAVKANYKVSDKQIEQAYKDYHQDTTVSLITAKDEDSSKKAIDALKSGDS 167

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQN 255
                +    +++  +        +  ++ +                       ++K+ +
Sbjct: 168 WETVYKKYSTDKTYAKQNGQLPAFDSTSTSV-------------DSAIQTAAFKIEKTGD 214

Query: 256 NTTNPYV-TQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
            TT P   +  G   I +    +     +++  LS Q            ++   ++ A I
Sbjct: 215 YTTTPVTGSNGGFYVIQLNKTTNKPSMNSVRNKLSEQI--------VTSFLNDQKNTAKI 266

Query: 315 H 315
            
Sbjct: 267 Q 267


>gi|311070875|ref|YP_003975798.1| putative lipoprotein [Bacillus atrophaeus 1942]
 gi|310871392|gb|ADP34867.1| putative lipoprotein [Bacillus atrophaeus 1942]
          Length = 257

 Score = 37.0 bits (83), Expect = 3.4,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 61/189 (32%), Gaps = 13/189 (6%)

Query: 41  RIRTTINGEVITDGDISKRIALLKLQKIN-----------GELEKIAVQELIVETLKKQE 89
           +    +N E +T  D +  +   + Q               +++K  +  L+ +TL  QE
Sbjct: 67  KTVAIVNNEKLTGSDYNSVLTSAQTQYQQSGQDPTSKDAAKQIKKQTINSLVGQTLLLQE 126

Query: 90  IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
             K G       V+    +  +      E  ++     G+     K  LA    +   V+
Sbjct: 127 ANKKGYKASDKEVDKQLAESKKQYKSDKEFNAALKKA-GLNTTKLKSELADNIKYEKYVE 185

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESR 209
            +   K    + E+     +           +    S    +++ Q   QK+ +   +  
Sbjct: 186 KEV-PKDKVTDKEVKDYYDQYAAKQGSSEGQKLPKLSEVKTQIKQQLEQQKQQEKLVKQV 244

Query: 210 LRLPKDCNK 218
            +L K+   
Sbjct: 245 EKLKKNAKL 253


>gi|293571342|ref|ZP_06682373.1| foldase protein PrsA [Enterococcus faecium E980]
 gi|291608558|gb|EFF37849.1| foldase protein PrsA [Enterococcus faecium E980]
          Length = 336

 Score = 37.0 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 30/309 (9%), Positives = 75/309 (24%), Gaps = 38/309 (12%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIA 76
            +  +     +  +        +++   T+ G  IT  D      L           +  
Sbjct: 4   KSIILAATSALAVLTLAACSGDTNKDIATMKGGTITVSDFYDEAKL-------ESSNQSL 56

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           VQ +I+  +      K G       V+  + + A++ G + E        Q     + K 
Sbjct: 57  VQRMIIYKV---FNNKYGDKVTDKQVDAEYDKQAKSLGDTFES-------QLETAGYTKD 106

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQG 196
                       +          + ++    +                         +  
Sbjct: 107 SYKEYIRNNLAFEAGLKAHVDITDDDLKTAWESFHPE------------VEAQIIKLSSE 154

Query: 197 FVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNN 256
              K +K + +      K        +    D    K      +      +   K     
Sbjct: 155 DEAKDVKKSADDGDDFSKLAKDKSTDSETKEDGGKVKFDSTTTTIPAEVKEAAFKLKDGE 214

Query: 257 TTNPYVTQKG------VEYIAICDKRDLGGEIAL-KAYLSAQNTPTKI--EKHEAEYVKK 307
            ++                + +   ++ G ++   K  L    T TK+       + + +
Sbjct: 215 VSDVITATNTTSYATEYYVVKMVKNQNKGNDMDKYKDQLKEIATETKLSDNTFTTKVIGE 274

Query: 308 LRSNAIIHY 316
              +A +  
Sbjct: 275 ELKDANVKI 283


>gi|332687190|ref|YP_004456964.1| foldase protein PrsA , clustered with pyrimidine conversion
           [Melissococcus plutonius ATCC 35311]
 gi|332371199|dbj|BAK22155.1| foldase protein PrsA precursor, clustered with pyrimidine
           conversion [Melissococcus plutonius ATCC 35311]
          Length = 327

 Score = 37.0 bits (83), Expect = 3.5,   Method: Composition-based stats.
 Identities = 35/315 (11%), Positives = 87/315 (27%), Gaps = 43/315 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRI--RTTINGEVITDGDISKRIALLKLQKINGELE 73
           +    VL    +  + +  + + S +     T+ G  IT  D   +I   +  +      
Sbjct: 1   MKKKLVLAAAGVFSVFALAACSSSDKNEDIATMKGSTITVQDFYDQIKHEQSSQQQVM-- 58

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNH 133
                      + K   +K G       V+  + + A+           +L + G     
Sbjct: 59  --------QMIVYKVFDDKYGKKVSDKDVDKQYDETAKAAEAQGTTIEDYLKQNGQTVKE 110

Query: 134 FKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
           +K+ +     +   +++    K  N +++        +       +              
Sbjct: 111 YKKTIKQGLAYQKGIEDHI--KISNKDLKTAWKSFHPEVEAQIIQIP------------- 155

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQF--QNLL 250
                +K  KD ++            ++ ++        GK ++  ++   PQ       
Sbjct: 156 ----AEKDAKDIKKQLTDGGDFTKIAKEKSTDNQTKKDGGKIKFDSQTQSIPQEVKDAAF 211

Query: 251 KKSQNNTTNPYVT------QKGVEYIAICDKRDLGGE-IALKAYLSAQNTPTKIEKHE-- 301
           K      + P  T      Q     + +   +  G +       L      TK+      
Sbjct: 212 KLKDGEVSEPIQTTNSSTYQSSYYLVKMNKNKAKGNDMKPYNKELKKIAKQTKMNDQAFT 271

Query: 302 AEYVKKLRSNAIIHY 316
            + +     +A +  
Sbjct: 272 TKVIGDELKDANVKI 286


>gi|163843404|ref|YP_001627808.1| rotamase family protein [Brucella suis ATCC 23445]
 gi|163674127|gb|ABY38238.1| rotamase family protein [Brucella suis ATCC 23445]
          Length = 628

 Score = 37.0 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 25/263 (9%), Positives = 63/263 (23%), Gaps = 12/263 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD----I 56
           M   + ++   +I  L    +++ F I  I       M+     T     ++  D     
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            +++  L  Q       + A    +   +  Q      +   +  +     Q A     +
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            +                           D ++N   +      +E   +  K+ +  ++
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
              +        D               +E+            E            K  Y
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAY------FEAHKEDYKAPEYRKISY 234

Query: 237 LLESDLHPQFQNLLKKSQNNTTN 259
           +          +    +Q+  + 
Sbjct: 235 VKLE--PSDIADPAAVTQDEISE 255


>gi|23502017|ref|NP_698144.1| rotamase family protein [Brucella suis 1330]
 gi|161619091|ref|YP_001592978.1| rotamase family protein [Brucella canis ATCC 23365]
 gi|254704427|ref|ZP_05166255.1| rotamase family protein [Brucella suis bv. 3 str. 686]
 gi|254710215|ref|ZP_05172026.1| rotamase family protein [Brucella pinnipedialis B2/94]
 gi|256031709|ref|ZP_05445323.1| rotamase family protein [Brucella pinnipedialis M292/94/1]
 gi|256369565|ref|YP_003107075.1| rotamase family protein [Brucella microti CCM 4915]
 gi|260566326|ref|ZP_05836796.1| peptidyl-prolyl cis-trans isomerase D [Brucella suis bv. 4 str. 40]
 gi|261317773|ref|ZP_05956970.1| rotamase [Brucella pinnipedialis B2/94]
 gi|261755104|ref|ZP_05998813.1| rotamase [Brucella suis bv. 3 str. 686]
 gi|265988804|ref|ZP_06101361.1| rotamase [Brucella pinnipedialis M292/94/1]
 gi|23347969|gb|AAN30059.1| rotamase family protein [Brucella suis 1330]
 gi|161335902|gb|ABX62207.1| rotamase family protein [Brucella canis ATCC 23365]
 gi|255999727|gb|ACU48126.1| rotamase family protein [Brucella microti CCM 4915]
 gi|260155844|gb|EEW90924.1| peptidyl-prolyl cis-trans isomerase D [Brucella suis bv. 4 str. 40]
 gi|261296996|gb|EEY00493.1| rotamase [Brucella pinnipedialis B2/94]
 gi|261744857|gb|EEY32783.1| rotamase [Brucella suis bv. 3 str. 686]
 gi|264661001|gb|EEZ31262.1| rotamase [Brucella pinnipedialis M292/94/1]
          Length = 628

 Score = 37.0 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 25/263 (9%), Positives = 63/263 (23%), Gaps = 12/263 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD----I 56
           M   + ++   +I  L    +++ F I  I       M+     T     ++  D     
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            +++  L  Q       + A    +   +  Q      +   +  +     Q A     +
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            +                           D ++N   +      +E   +  K+ +  ++
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
              +        D               +E+            E            K  Y
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAY------FEAHKEDYKAPEYRKISY 234

Query: 237 LLESDLHPQFQNLLKKSQNNTTN 259
           +          +    +Q+  + 
Sbjct: 235 VKLE--PSDIADPAAVTQDEISE 255


>gi|323694481|ref|ZP_08108651.1| hypothetical protein HMPREF9475_03515 [Clostridium symbiosum
           WAL-14673]
 gi|323501469|gb|EGB17361.1| hypothetical protein HMPREF9475_03515 [Clostridium symbiosum
           WAL-14673]
          Length = 314

 Score = 37.0 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 12/122 (9%), Positives = 24/122 (19%), Gaps = 6/122 (4%)

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQ 254
           Q     R      S     ++ +  +  +      +  +     ES            S 
Sbjct: 168 QAETADRQTAENLSLAAAQENADFEKCASDAGLSATTRQLGRKEESQ--EFEDAAFALSA 225

Query: 255 NNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAII 314
              +    +      I          +    A         +  K   E     R    +
Sbjct: 226 GQVSQVIESNGTYYVIKCIS----DYDEEATAARKKIIFEERKRKAFKEIYDSFREGINL 281

Query: 315 HY 316
            Y
Sbjct: 282 TY 283


>gi|146343136|ref|YP_001208184.1| putative signal peptide [Bradyrhizobium sp. ORS278]
 gi|146195942|emb|CAL79969.1| conserved hypothetical protein; putative signal peptide
           [Bradyrhizobium sp. ORS278]
          Length = 303

 Score = 37.0 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 25/263 (9%), Positives = 71/263 (26%), Gaps = 26/263 (9%)

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
           L +  +  L++  L                V        ++   + ++    +  +    
Sbjct: 47  LREPLLHFLVLGGLIFAADAIMHPPAKDEKVITVTKALRQSFIDTFDEDKQRVPSEAELQ 106

Query: 132 NHFKQYLAIQSIWPD-----------VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
              + ++A + ++ +           ++++    K   L  +     Q         +  
Sbjct: 107 KMTEAWVASEILYREGKLLGVDRGDEMIRDRVAFKLQYLIFDQVRVPQPTDEQLQAWFAE 166

Query: 181 RTVLF-----SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
               F             +     +R  D    +    +  ++      +          
Sbjct: 167 NHARFDEPERVSFFMTPPSDEATARRALDDIREQRETEELRDQTRAILDRPVPS------ 220

Query: 236 YLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDL--GGEIALKAYLSAQNT 293
             L       F++ L K          ++ G   + +  ++         ++A  +   T
Sbjct: 221 --LADGFGQSFRDNLLKLPLQEWTLLQSKDGWHVVRLDARKPGALAKFEDIRAEAAKIWT 278

Query: 294 PTKIEKHEAEYVKKLRSNAIIHY 316
             +  K   E V +L++N  I Y
Sbjct: 279 TEETRKQAWEAVNRLKANYTIRY 301


>gi|322706004|gb|EFY97586.1| hypothetical protein MAA_06811 [Metarhizium anisopliae ARSEF 23]
          Length = 794

 Score = 37.0 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 26/287 (9%), Positives = 82/287 (28%), Gaps = 23/287 (8%)

Query: 48  GEVITDGDISKRIALLKLQKINGELEKIAVQEL-----------IVETLKKQEIEKSGIT 96
            E I    +     +   Q++ G+  K A  +            + +   KQ   +    
Sbjct: 261 NEKIHQSAVEMAKKMYARQQLGGDQPKDASGQASGASQPNQYMNLQDAAYKQAQARIAKL 320

Query: 97  FDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKND---FM 153
            D    +  F ++  +   S       + ++        +         + ++     F 
Sbjct: 321 HDEYHQSREFQEYYGSEKASNPKHRFSMSRKWGRRGSHSEDDLDDRQQSEKIREQMSMFS 380

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
            K   ++       ++      +  +   +         +        I D E    +  
Sbjct: 381 SKLSQVDKGKRDKDREALLAAAQRNVKAQLHGMDEKVYQETGRANPSLITDWEAKAQKAA 440

Query: 214 KDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKG-VEYIAI 272
           +  ++     SK      G   ++ + +++      ++   ++  +   T++   E + +
Sbjct: 441 QAQHEARTDDSKGKIDIGGGM-FMTQEEINAIASKKIQPVLDDINDKAETERERQEVLRM 499

Query: 273 CD-------KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNA 312
            +       +++   +   K          K E+   +  +K+   A
Sbjct: 500 EEQARREQAEKEKARDRETKEIAKKDKEQEKQEEKAKKLQEKMDEKA 546


>gi|257892780|ref|ZP_05672433.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,408]
 gi|257829159|gb|EEV55766.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
           1,231,408]
          Length = 303

 Score = 37.0 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 26/313 (8%), Positives = 87/313 (27%), Gaps = 44/313 (14%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +   F+ +   +   +         +   +  G  I++ ++   +  ++           
Sbjct: 1   MKKKFLALAIVLGAGLLSGCTNAGEKTAVSYKGGTISEQEVMDSLKKMQG-------ADS 53

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            VQ+LI   + +   +K G    +  V+  + Q  +  G S +        Q     + +
Sbjct: 54  TVQQLI---VYQVFEDKYGDDVSTKEVDSQYDQTKKQLGDSFDS-------QLKTAGYTE 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
           +            +          + ++    +              ++    +N  ++ 
Sbjct: 104 ETFKDSIKQSLAFQEGLKKHIKLTDEDLKTAWKTFHPEVE-----AQIIQVASENDAKDV 158

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASK-IHDVSIGKAQYLLESDLHPQF--QNLLKK 252
                          +        +  ++        GK ++   +   P    +   K 
Sbjct: 159 KKAA----------DKGDDFSKLAKDKSTDTTTKEDGGKVKFDSTTTTVPTEVKEAAFKL 208

Query: 253 SQNNTTNPYVTQKG------VEYIAICDKRDLGGEIAL-KAYLSAQNTPTKIEK--HEAE 303
                ++   +            + +   ++ G ++   K  L    T TK+     + +
Sbjct: 209 KDGQVSDVITSTNTSTYATEYYVVKMVKNQNKGNDMDKYKKELKEIATDTKLSDSTFQNK 268

Query: 304 YVKKLRSNAIIHY 316
            + ++  +A +  
Sbjct: 269 VIGEVLKDANVKI 281


>gi|254693848|ref|ZP_05155676.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 3 str.
           Tulya]
 gi|261214133|ref|ZP_05928414.1| rotamase [Brucella abortus bv. 3 str. Tulya]
 gi|260915740|gb|EEX82601.1| rotamase [Brucella abortus bv. 3 str. Tulya]
          Length = 628

 Score = 37.0 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 25/263 (9%), Positives = 63/263 (23%), Gaps = 12/263 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD----I 56
           M   + ++   +I  L    +++ F I  I       M+     T     ++  D     
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            +++  L  Q       + A    +   +  Q      +   +  +     Q A     +
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            +                           D ++N   +      +E   +  K+ +  ++
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
              +        D               +E+            E            K  Y
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAY------FEAHKEDYKAPEYRKISY 234

Query: 237 LLESDLHPQFQNLLKKSQNNTTN 259
           +          +    +Q+  + 
Sbjct: 235 VKLE--PSDIADPAAVTQDEISE 255


>gi|256061222|ref|ZP_05451373.1| rotamase family protein [Brucella neotomae 5K33]
 gi|261325229|ref|ZP_05964426.1| rotamase [Brucella neotomae 5K33]
 gi|261301209|gb|EEY04706.1| rotamase [Brucella neotomae 5K33]
          Length = 628

 Score = 37.0 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/263 (9%), Positives = 63/263 (23%), Gaps = 12/263 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD----I 56
           M   + ++   +I  L    +++ F I  I       M+     T     ++  D     
Sbjct: 1   MLDSLRSAAQTWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            +++  L  Q       + A    +   +  Q      +   +  +     Q A     +
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            +                           D ++N   +      +E   +  K+ +  ++
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
              +        D               +E+            E            K  Y
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAY------FEAHKEDYKAPEYRKISY 234

Query: 237 LLESDLHPQFQNLLKKSQNNTTN 259
           +          +    +Q+  + 
Sbjct: 235 VKLE--PSDIADPAAVTQDEISE 255


>gi|225627608|ref|ZP_03785645.1| rotamase family protein [Brucella ceti str. Cudo]
 gi|256159868|ref|ZP_05457597.1| rotamase family protein [Brucella ceti M490/95/1]
 gi|256255110|ref|ZP_05460646.1| rotamase family protein [Brucella ceti B1/94]
 gi|260168841|ref|ZP_05755652.1| rotamase family protein [Brucella sp. F5/99]
 gi|261222305|ref|ZP_05936586.1| rotamase [Brucella ceti B1/94]
 gi|261758329|ref|ZP_06002038.1| peptidyl-prolyl cis-trans isomerase D [Brucella sp. F5/99]
 gi|265998269|ref|ZP_06110826.1| rotamase [Brucella ceti M490/95/1]
 gi|225617613|gb|EEH14658.1| rotamase family protein [Brucella ceti str. Cudo]
 gi|260920889|gb|EEX87542.1| rotamase [Brucella ceti B1/94]
 gi|261738313|gb|EEY26309.1| peptidyl-prolyl cis-trans isomerase D [Brucella sp. F5/99]
 gi|262552737|gb|EEZ08727.1| rotamase [Brucella ceti M490/95/1]
          Length = 628

 Score = 37.0 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/263 (9%), Positives = 63/263 (23%), Gaps = 12/263 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD----I 56
           M   + ++   +I  L    +++ F I  I       M+     T     ++  D     
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            +++  L  Q       + A    +   +  Q      +   +  +     Q A     +
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            +                           D ++N   +      +E   +  K+ +  ++
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
              +        D               +E+            E            K  Y
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAY------FEAHKEDYKAPEYRKISY 234

Query: 237 LLESDLHPQFQNLLKKSQNNTTN 259
           +          +    +Q+  + 
Sbjct: 235 VKLE--PSDIADPAAVTQDEISE 255


>gi|148560591|ref|YP_001259060.1| rotamase family protein [Brucella ovis ATCC 25840]
 gi|148371848|gb|ABQ61827.1| rotamase family protein [Brucella ovis ATCC 25840]
          Length = 628

 Score = 37.0 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/263 (9%), Positives = 63/263 (23%), Gaps = 12/263 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD----I 56
           M   + ++   +I  L    +++ F I  I       M+     T     ++  D     
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            +++  L  Q       + A    +   +  Q      +   +  +     Q A     +
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            +                           D ++N   +      +E   +  K+ +  ++
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
              +        D               +E+            E            K  Y
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAY------FEAHKEDYKAPEYRKISY 234

Query: 237 LLESDLHPQFQNLLKKSQNNTTN 259
           +          +    +Q+  + 
Sbjct: 235 VKLE--PSDIADPAAVTQDEISE 255


>gi|62290052|ref|YP_221845.1| rotamase family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82699979|ref|YP_414553.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis biovar
           Abortus 2308]
 gi|189024292|ref|YP_001935060.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus S19]
 gi|237815561|ref|ZP_04594558.1| rotamase family protein [Brucella abortus str. 2308 A]
 gi|254689364|ref|ZP_05152618.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 6 str.
           870]
 gi|254697497|ref|ZP_05159325.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730394|ref|ZP_05188972.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 4 str.
           292]
 gi|256257610|ref|ZP_05463146.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 9 str.
           C68]
 gi|260546604|ref|ZP_05822343.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus NCTC 8038]
 gi|260754881|ref|ZP_05867229.1| rotamase [Brucella abortus bv. 6 str. 870]
 gi|260758098|ref|ZP_05870446.1| rotamase [Brucella abortus bv. 4 str. 292]
 gi|260761922|ref|ZP_05874265.1| rotamase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883893|ref|ZP_05895507.1| rotamase [Brucella abortus bv. 9 str. C68]
 gi|297248452|ref|ZP_06932170.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 5 str.
           B3196]
 gi|62196184|gb|AAX74484.1| rotamase family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82616080|emb|CAJ11118.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis biovar
           Abortus 2308]
 gi|189019864|gb|ACD72586.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus S19]
 gi|237788859|gb|EEP63070.1| rotamase family protein [Brucella abortus str. 2308 A]
 gi|260095654|gb|EEW79531.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus NCTC 8038]
 gi|260668416|gb|EEX55356.1| rotamase [Brucella abortus bv. 4 str. 292]
 gi|260672354|gb|EEX59175.1| rotamase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674989|gb|EEX61810.1| rotamase [Brucella abortus bv. 6 str. 870]
 gi|260873421|gb|EEX80490.1| rotamase [Brucella abortus bv. 9 str. C68]
 gi|297175621|gb|EFH34968.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 5 str.
           B3196]
          Length = 628

 Score = 37.0 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/263 (9%), Positives = 63/263 (23%), Gaps = 12/263 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD----I 56
           M   + ++   +I  L    +++ F I  I       M+     T     ++  D     
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            +++  L  Q       + A    +   +  Q      +   +  +     Q A     +
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            +                           D ++N   +      +E   +  K+ +  ++
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
              +        D               +E+            E            K  Y
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAY------FEAHKEDYKAPEYRKISY 234

Query: 237 LLESDLHPQFQNLLKKSQNNTTN 259
           +          +    +Q+  + 
Sbjct: 235 VKLE--PSDIADPAAVTQDEISE 255


>gi|17987128|ref|NP_539762.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis bv. 1
           str. 16M]
 gi|225852638|ref|YP_002732871.1| rotamase family protein [Brucella melitensis ATCC 23457]
 gi|256044795|ref|ZP_05447699.1| rotamase family protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113701|ref|ZP_05454505.1| rotamase family protein [Brucella melitensis bv. 3 str. Ether]
 gi|256263869|ref|ZP_05466401.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis bv. 2
           str. 63/9]
 gi|260565602|ref|ZP_05836086.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis bv. 1
           str. 16M]
 gi|265991219|ref|ZP_06103776.1| rotamase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995055|ref|ZP_06107612.1| rotamase [Brucella melitensis bv. 3 str. Ether]
 gi|17982791|gb|AAL52026.1| peptidyl-prolyl cis-trans isomerase d [Brucella melitensis bv. 1
           str. 16M]
 gi|225641003|gb|ACO00917.1| rotamase family protein [Brucella melitensis ATCC 23457]
 gi|260151670|gb|EEW86764.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis bv. 1
           str. 16M]
 gi|262766168|gb|EEZ11957.1| rotamase [Brucella melitensis bv. 3 str. Ether]
 gi|263002003|gb|EEZ14578.1| rotamase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094000|gb|EEZ17934.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis bv. 2
           str. 63/9]
 gi|326409157|gb|ADZ66222.1| rotamase family protein [Brucella melitensis M28]
 gi|326538867|gb|ADZ87082.1| rotamase family protein [Brucella melitensis M5-90]
          Length = 628

 Score = 37.0 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/263 (9%), Positives = 63/263 (23%), Gaps = 12/263 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD----I 56
           M   + ++   +I  L    +++ F I  I       M+     T     ++  D     
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            +++  L  Q       + A    +   +  Q      +   +  +     Q A     +
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            +                           D ++N   +      +E   +  K+ +  ++
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
              +        D               +E+            E            K  Y
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAY------FEAHKEDYKAPEYRKISY 234

Query: 237 LLESDLHPQFQNLLKKSQNNTTN 259
           +          +    +Q+  + 
Sbjct: 235 VKLE--PSDIADPAAVTQDEISE 255


>gi|241759320|ref|ZP_04757426.1| conserved hypothetical protein [Neisseria flavescens SK114]
 gi|241320456|gb|EER56753.1| conserved hypothetical protein [Neisseria flavescens SK114]
          Length = 254

 Score = 37.0 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 21/225 (9%), Positives = 50/225 (22%), Gaps = 6/225 (2%)

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
             E      DS                +  D  +            +             
Sbjct: 25  APEIDPARIDSMVAEVLRQADQHPNQTAKPDGQAIRKDVVTRLQTLEILKNEAIKAGLDK 84

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIR-TVLFSIPDNKLQNQGFVQKRIKDAEE 207
             +   ++ N+E E  AN+                  F     ++     V     +   
Sbjct: 85  DAEVQNQFKNVEAEFYANQYAAYLERQTAVDDAELRRFYDQQTRIIKLQQVSFASAEEVR 144

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTT-NPYVTQK 265
           +   L       E+   +  +       ++    L PQ        ++ + T  P     
Sbjct: 145 AAQELLLKGLSFEELMKRYPNPEQEFDGFISPQQLSPQLATAFADMNRGDVTHEPIQMGN 204

Query: 266 GVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
                 +       +      ++  ++      K+E      +K+
Sbjct: 205 RFYLFKLSAVERNPNAEPFELVRNQIAQAVKRQKVENQIERILKE 249


>gi|88705926|ref|ZP_01103635.1| conserved hypothetical protein [Congregibacter litoralis KT71]
 gi|88699997|gb|EAQ97107.1| conserved hypothetical protein [Congregibacter litoralis KT71]
          Length = 266

 Score = 37.0 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 27/271 (9%), Positives = 63/271 (23%), Gaps = 49/271 (18%)

Query: 22  LIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELI 81
           L  F  +  + + ++   +R  TT     IT    ++ +                   L+
Sbjct: 15  LFAFFAIGGLCFIAYTQLNREATT----PITLSQSAQAL-------------------LV 51

Query: 82  VETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQ 141
            E              D          + +   L  E  +S L             L  Q
Sbjct: 52  AEWEMLTGKSAQAADVD-----AILNDYYQRELLYREGIASELHLSDASVRELIIELMQQ 106

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
            +  ++ +             I     +      ++                     +  
Sbjct: 107 RVTGEIAEPSPKDLVNFYADNIERYYTEASISFSQKVF------------ASAPENPEAL 154

Query: 202 IKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPY 261
            +   +   +      +   F      +  G           P  + L   +      PY
Sbjct: 155 REQLNQGGGQAGAVPWQGSDFPDYGVSMVRGLFG-------QPLLEILQSLAFGEWQGPY 207

Query: 262 VTQKGVEYIAICDKRDLG--GEIALKAYLSA 290
            +++G  Y  +  +R         ++  + A
Sbjct: 208 ESRQGWHYFRVTARRAPQLLPFERVRDQVLA 238


>gi|262068174|ref|ZP_06027786.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium periodonticum
           ATCC 33693]
 gi|291378117|gb|EFE85635.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium periodonticum
           ATCC 33693]
          Length = 563

 Score = 37.0 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 29/262 (11%), Positives = 68/262 (25%), Gaps = 8/262 (3%)

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
              I  L  +  N   +    ++    T        +    +         + A+N    
Sbjct: 207 EMEIKDLAPEYENLIEKVAYEEDGFKITNLDLAKIMTTFMINQKATKEQAEELAKNMITK 266

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
               +     +G+  N     ++    +   +      +    + E+ +     K     
Sbjct: 267 QIKVAKMAKDKGVKVNEELDLMSQLQEYAVGLSEKVREEIKPTDAELESFFNSNKTRYNI 326

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
                  L  +     +    + K   +   + L       K +   +    +       
Sbjct: 327 SETADAKLVFLNVKSTKEDDELAKDKAEKLLAELTPENFTEKGKSLGNNQDVIY-QDLGT 385

Query: 237 LLESDLHPQFQNLLKKSQNN--TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTP 294
                +  +F+  LK   +N        T+ G     +  K +   +     ++     P
Sbjct: 386 FGTKAMVKEFEEALKDVPSNTIVNKVIKTKFGYHVAYV--KANDNNQQWSVEHILIVPYP 443

Query: 295 TKIEKHEAEYVKKLRS-NAIIH 315
              EK   E ++KL    A I 
Sbjct: 444 --SEKTVTEKLEKLNKLKADIE 463


>gi|206890309|ref|YP_002248870.1| hypothetical protein THEYE_A1042 [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742247|gb|ACI21304.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 162

 Score = 37.0 bits (83), Expect = 4.0,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 54/154 (35%), Gaps = 3/154 (1%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           ++    VL++   + +VS        R+   ++   IT  D  K  + +K +KI     +
Sbjct: 1   MVKFILVLVMLFNIVVVSSVFPETIDRVIAYVDSNAITLRDFEKVASKMK-EKIPQIKNE 59

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG--LSAEDFSSFLDKQGIGDN 132
             ++ +I   L  ++ ++  I      +   +V     +G  +       + ++  I   
Sbjct: 60  EILETMINRVLLLRKAKELFIEGKDEELINNYVDLKIKSGIIIPENKIREYYEENKIKFK 119

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPAN 166
                     I   + + +F  K      E+  N
Sbjct: 120 DTPYIYIRDEIEKYLFEKEFNQKLKEYIEELRQN 153


>gi|224417810|ref|ZP_03655816.1| hypothetical protein HcanM9_00899 [Helicobacter canadensis MIT
           98-5491]
 gi|253827151|ref|ZP_04870036.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313141352|ref|ZP_07803545.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|253510557|gb|EES89216.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313130383|gb|EFR48000.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 489

 Score = 37.0 bits (83), Expect = 4.0,   Method: Composition-based stats.
 Identities = 30/326 (9%), Positives = 89/326 (27%), Gaps = 46/326 (14%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M S +       +  +    +  +           ++ +S     +    ++  ++ +  
Sbjct: 1   MISFMQKHKKYLMITIWVSTIAFVGAGFVGWGSYDFSSTSNAVAVVGKTKVSINEMQREY 60

Query: 61  ALL-------------KLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
           + L             + Q     +E+ A+  LI++ L        G+      +     
Sbjct: 61  SRLYGIYNQLVGGTLDEEQAKKMGIEEQALNNLIIKALMLNYAYDLGLRASKEEIIQAIT 120

Query: 108 QH--ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
                +N G   E     + ++        +    +++    +     +    LE+E  +
Sbjct: 121 STESFQNNGQFDEQIYKRILQENQLKPKDFEESIKENLILQKLDALLDMPLTPLEIETLS 180

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
                   ++ + +   ++     N       V++  ++ ++             + +S 
Sbjct: 181 AAY-----SMEDLVHIQIIDKKTINVNPTNEEVKRYWEENKDIYQTERGY-----EISSV 230

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK 285
              +   + Q       +  F+N    S+                              K
Sbjct: 231 FIPLDSIEIQEASLESYYEDFKNQFLDSEGQVI---------------------PYEKAK 269

Query: 286 AYLSAQNTPTKIEKHEAEYVKKLRSN 311
             +S +    + +K   +    LR N
Sbjct: 270 EQVSEKYRDAQAQKEALKEYIALRKN 295


>gi|224373001|ref|YP_002607373.1| hypothetical protein NAMH_0972 [Nautilia profundicola AmH]
 gi|223589838|gb|ACM93574.1| conserved hypothetical protein [Nautilia profundicola AmH]
          Length = 478

 Score = 37.0 bits (83), Expect = 4.0,   Method: Composition-based stats.
 Identities = 37/325 (11%), Positives = 88/325 (27%), Gaps = 50/325 (15%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T     +  +    +  I           +   S     I    ++  D+ +  
Sbjct: 1   MIEWMQTHRKWLVITIWIATIAFIGAGFVGWGQFQFGRKSSTVAKIKDTEVSIQDVQEVY 60

Query: 61  ALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
             L  +K                 L+K A    I + + +Q  +  G+      V    +
Sbjct: 61  NNLFQEKNKQLGGTLDDATAEKMGLKKQAFDMAIQQGILRQYAKDLGMYVTDEEVAKQVL 120

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
           Q+ ++          +L + G     F+  L  Q +   ++    +     L++   +  
Sbjct: 121 QYFKDKKTYL----MYLKQTGQKAKDFEAKLRKQLLIQKLLTALHIKPSKTLQLTFASAL 176

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIH 227
               N+ ++      ++         ++  ++   +  ++           + K   K  
Sbjct: 177 YNSDNLEIK------IINKSSVKVNLSEDEIKAFWEKNKQKYQSPTMYKIAIVKTPIK-- 228

Query: 228 DVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAY 287
                      E+DL   +       +N                  DK ++      K  
Sbjct: 229 -------GVATENDLKAFYNENKTNYRN------------------DKGEILTYEEAKNQ 263

Query: 288 LSAQNTPTKIEKHEAEYVKKLRSNA 312
           +         +K      KKL+  A
Sbjct: 264 VKKDYLAKISKKDAIIAYKKLKEGA 288


>gi|255012784|ref|ZP_05284910.1| two-component system sensor histidine kinase/response regulator,
           hybrid [Bacteroides sp. 2_1_7]
          Length = 887

 Score = 37.0 bits (83), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/233 (6%), Positives = 55/233 (23%), Gaps = 17/233 (7%)

Query: 19  YFVLIIFCIVPIVSYKSWAMSSRIR-------------TTINGEVITDGDISKRIALLKL 65
           + ++ +  IV      S      +                IN   I   +      ++K 
Sbjct: 5   FLLVWLTLIVLCGCTSSGKQKRHVIGLSQCMLDDAWREAMINDMRIEASNYDDMEIIIKD 64

Query: 66  QKINGELEKIAVQELIVET----LKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFS 121
            + N E +   +++LI +     +      +                   +  ++ + ++
Sbjct: 65  AQNNNETQIQQIRDLIRQKVDVLIISPYQSEPITAVAEEAYRAGIPTIITDRKVNTDQYT 124

Query: 122 SFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIR 181
           SF+              A   + P+ +  +          +              +   R
Sbjct: 125 SFVGANNYEIGLAAGNYAANYLPPNAIILEIWGLTQTSPAQERHKGFVDALREREDLSFR 184

Query: 182 TVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKA 234
            +      +  + +    +  +  +              ++      +     
Sbjct: 185 KIEGQWLVDTARMELRKLEHPEQIDFVYAHNDMMAIAAREYFMAWDSIRGRDL 237


>gi|284989497|ref|YP_003408051.1| hypothetical protein Gobs_0918 [Geodermatophilus obscurus DSM
           43160]
 gi|284062742|gb|ADB73680.1| hypothetical protein Gobs_0918 [Geodermatophilus obscurus DSM
           43160]
          Length = 343

 Score = 37.0 bits (83), Expect = 4.1,   Method: Composition-based stats.
 Identities = 28/311 (9%), Positives = 84/311 (27%), Gaps = 32/311 (10%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIAL--------LKL 65
           + LT    + +  +  +           +   +  E +T G++   +             
Sbjct: 17  RRLTASLAVGLVALAGV---AGCRSDPGVAAYVGDERVTVGELRTAVDTRLEDPALAEAA 73

Query: 66  QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLD 125
                E  ++ ++ L+   L  +  ++ G+T D   V     +     G   E   +   
Sbjct: 74  AGREDEFTRLVLRRLVEAELYDRFAQRYGVTVDDGDVRARLDELLA--GEDPEAVYAQAA 131

Query: 126 KQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLF 185
            QG+      + +  Q +   V ++        L  E      + +  ++ +  +  V  
Sbjct: 132 SQGVARADVFETVRQQVLRQRVAESQ--GLVRGLSEEELRAAYEEQAPSLAQVRLGYVNV 189

Query: 186 SIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQ 245
                       +Q           +                  ++ +        +   
Sbjct: 190 PDQGAADAAVATLQADPGAYPAIAAQF-------------PGATTLPEVATRAPDQVPAP 236

Query: 246 FQNLLKKSQNNTTNPYVTQK--GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAE 303
             +++  +  N+          GV  + +  +  +     ++  L         +    +
Sbjct: 237 LADVVVSAAPNSATSLTLPDLPGVLVVFV-GEPAVPSFEEVRPQLEESARGE-SDAAAQQ 294

Query: 304 YVKKLRSNAII 314
            V  +R+   +
Sbjct: 295 LVADVRAGIDV 305


>gi|303236370|ref|ZP_07322960.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens FB035-09AN]
 gi|302483428|gb|EFL46433.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens FB035-09AN]
          Length = 415

 Score = 37.0 bits (83), Expect = 4.2,   Method: Composition-based stats.
 Identities = 32/286 (11%), Positives = 70/286 (24%), Gaps = 27/286 (9%)

Query: 47  NGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF 106
           N EVI   DI +   L+     +   +   + +LI        +        S       
Sbjct: 57  NNEVI-RFDIQRTDELINGFDDSEYGKNEGLDKLIGGKKVDIIVGGPPCQAYSLAGRIRD 115

Query: 107 VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIW---------PDVVKNDFMLKYG 157
               +N   +    S     +      F     +  +            + K+     Y 
Sbjct: 116 EHGMKNDYRNYLFESYIRIVKHFRPKFFVFENVVGLLSAAPDGYPIVEKIRKDFIASGYN 175

Query: 158 NLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCN 217
             E       +       +      ++    D    ++        +  +    +     
Sbjct: 176 VAENFKDTLFEVADFGIPQHRRRVIIVGIRLDTFGNSEQEALSITNNMIDEFYNVLMPSY 235

Query: 218 KLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNT---TNPYVTQK-GVEYIAIC 273
              K A +    +IG           P +       +        P+ +++ G       
Sbjct: 236 ---KKAKRTVKEAIGDL--------PPIYPLDESVKEGGKKFSHAPFSSERIGNHIPRFH 284

Query: 274 DKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR-SNAII-HYY 317
            KRD+     L   + +        +   E   ++    + I  YY
Sbjct: 285 SKRDIDVFKFLAEDIKSGRKEYVSTEKLKELYTQITGKKSNIHKYY 330


>gi|312142755|ref|YP_003994201.1| peptidil-prolyl cis-trans isomerase [Halanaerobium sp.
          'sapolanicus']
 gi|311903406|gb|ADQ13847.1| peptidil-prolyl cis-trans isomerase [Halanaerobium sp.
          'sapolanicus']
          Length = 251

 Score = 37.0 bits (83), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 15/85 (17%)

Query: 13 IKLLTTYFVLIIFCIVPIVSYKSWA---------------MSSRIRTTINGEVITDGDIS 57
          +K +    ++I   IVP   +                   +   I   +NGE ITD +++
Sbjct: 1  MKKILVSLLIITVLIVPTSVFAQEMDMTPEEPVDSSIEEDIGGNIVAEVNGEEITDQELA 60

Query: 58 KRIALLKLQKINGELEKIAVQELIV 82
          ++  + +L +   ++++   Q L+ 
Sbjct: 61 QQANVNQLLQEIAQIDQQLAQVLVD 85


>gi|149183221|ref|ZP_01861666.1| YacD [Bacillus sp. SG-1]
 gi|148849054|gb|EDL63259.1| YacD [Bacillus sp. SG-1]
          Length = 123

 Score = 37.0 bits (83), Expect = 4.3,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 36/124 (29%), Gaps = 13/124 (10%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPI-----VSYKSWAMSSRIRTTINGEVITDGD 55
           M +KV    S  I L+       +  ++           +    +    T+ GE I+   
Sbjct: 1   MDTKVRLKRSVLISLVFILLGANVVTLIYFTKAEAGPGLAELAGAETAATVGGETISRES 60

Query: 56  ISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
               +             K  ++ELI + +  Q  EK  I      ++            
Sbjct: 61  WMFEM--------EKRYGKEVLRELINQKVMIQLAEKYDIKVTDEELDKEVALIKSVYSS 112

Query: 116 SAED 119
             +D
Sbjct: 113 YDKD 116


>gi|220930557|ref|YP_002507466.1| peptidase S8/S53 subtilisin kexin sedolisin [Clostridium
           cellulolyticum H10]
 gi|220000885|gb|ACL77486.1| peptidase S8 and S53 subtilisin kexin sedolisin [Clostridium
           cellulolyticum H10]
          Length = 632

 Score = 37.0 bits (83), Expect = 4.3,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 71/222 (31%), Gaps = 3/222 (1%)

Query: 9   LSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
           +S F K L   F+LI   + P+ SY   A +     ++    IT   I K +  +KL K 
Sbjct: 1   MSGFKKFLVIPFILIFLAVYPLTSYVESAETDSAPYSL--TEITKLQIIKEVNGVKLAKA 58

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
                +     +I +    +E  K                  +    S+++         
Sbjct: 59  IFN-NQDIKDIVIFKDGSIEEYSKEKHGKLFEKDKLSKKLKEKIKKSSSDEEIPVAVHIN 117

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
             D++  +      +    +K++   K      E     ++    +  +++   +     
Sbjct: 118 DIDHNEVEKYVKDKLKIKDIKDEKPEKIKEYIKEKRIKSKEEYKKSNSQFVKEYINNEEE 177

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVS 230
             + Q    +  R+ + +  +L       +++ F     +  
Sbjct: 178 LFESQYSPLIIIRLTNMDIEKLSKNMQVQEMDLFVDSTKEED 219


>gi|153854680|ref|ZP_01995930.1| hypothetical protein DORLON_01928 [Dorea longicatena DSM 13814]
 gi|149752784|gb|EDM62715.1| hypothetical protein DORLON_01928 [Dorea longicatena DSM 13814]
          Length = 347

 Score = 37.0 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 22/297 (7%), Positives = 65/297 (21%), Gaps = 30/297 (10%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI---- 68
           +K       L       ++          +      E IT G  +      + Q      
Sbjct: 1   MKKRALILALAGIMAASLIG-CGSRKDDAVVVKAGDEEITAGVANFYARYTQAQYETYFA 59

Query: 69  -------------------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQH 109
                                 +++  + +L    L ++ ++   +              
Sbjct: 60  SYLGGDDMWSRNASDGKTYEESIKETLLDDLKNMALLEEHMKDYDVKLTKADKKAINDAA 119

Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
                 +++     +             +AI+      +  D  +K  + E      +  
Sbjct: 120 KEFDKANSQKKKDKVSGSKENVKRVMTLMAIEQKMRAAIVADANVKVTDEEATQKHMQYV 179

Query: 170 MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
             + ++      +   ++ + + +      +      ++         +    A      
Sbjct: 180 EFDYSITSDSSSSSDTTVSEAEKKKNKETAEAFAKGAKTAEDFAAYATEQGTEAKDATFD 239

Query: 230 SIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKA 286
           S         S      +   K  +  TT+            +    D       K 
Sbjct: 240 S------DSVSPSKEVVKAADKLGEGETTDVIEGDTACYVAKVTSLNDKTATETKKQ 290


>gi|328778695|ref|XP_001121287.2| PREDICTED: protein I'm not dead yet-like [Apis mellifera]
          Length = 535

 Score = 36.6 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 6/94 (6%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTIN--GEVITDGDISKRIALLKLQKINGEL 72
           ++   F+  I+  +  + Y        +  TI   GE IT+  I +R   L         
Sbjct: 230 MIVNSFLTWIYLRIAFMGYLRPESKDAVAATIGAEGEAITNEVIDQRYKELG----KMSF 285

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF 106
            +++V  L V  +      K G            
Sbjct: 286 HELSVAILFVICVILWLFRKPGFVVGWAEYLTQI 319


>gi|312876281|ref|ZP_07736267.1| conserved hypothetical protein [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311796927|gb|EFR13270.1| conserved hypothetical protein [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 230

 Score = 36.6 bits (82), Expect = 4.4,   Method: Composition-based stats.
 Identities = 24/202 (11%), Positives = 56/202 (27%), Gaps = 28/202 (13%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
                  I  + +  VLI   +V         +   +   +NG  I   D+    +L +L
Sbjct: 1   MKRSKILIAGICSLAVLIGIVVVGWSLASKKELPKDVVAVVNGHKIYKKDLDMAYSLEEL 60

Query: 66  QKIN-------------------------GELEKIAVQELIVETLKKQEIEKSGITFDSN 100
           +  N                          +  +  + E+I   +   E +K G     +
Sbjct: 61  RYENAKVSFEELKKKYGADAAKELEGSLRKKTRQEILDEMIEWLVLYDEAKKEGCEVSLD 120

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
               ++ +  +       D  S  +     +      L    +    +      +    E
Sbjct: 121 EAKAYYNKTQKMIQDVLSDKLSTGEMN---NTQRAIELINSFVKKQGISEKEHEEMVIKE 177

Query: 161 MEIPANKQKMKNITVREYLIRT 182
            ++  + QK      ++Y  + 
Sbjct: 178 CQMLLSIQKYLQEKEKQYKNKH 199


>gi|312792332|ref|YP_004025255.1| hypothetical protein Calkr_0065 [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179472|gb|ADQ39642.1| hypothetical protein Calkr_0065 [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 230

 Score = 36.6 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 23/202 (11%), Positives = 54/202 (26%), Gaps = 28/202 (13%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKL 65
                  I  + +  VLI    V         +   +   +NG  I   D+    +L +L
Sbjct: 1   MKRSKILIAGICSLAVLIGIVAVGWSLASKKELPKDVVAVVNGHKIYKKDLDMAYSLEEL 60

Query: 66  QKIN-------------------------GELEKIAVQELIVETLKKQEIEKSGITFDSN 100
           +  N                          +  +  + E+I   +   E +K G     +
Sbjct: 61  RYENAKVSFEELKKKYGADVAKELEGSLRKKTRQEILDEMIEWLVLYDEAKKEGCEVSLD 120

Query: 101 TVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
               ++ +  +          S  +     +      L    +    +      +    E
Sbjct: 121 EAKAYYNKTQKMIQDVLSGKLSTGEMN---NTQRAIELINSFVKKQGISEKEHEEMVIKE 177

Query: 161 MEIPANKQKMKNITVREYLIRT 182
            ++  + QK      ++Y  + 
Sbjct: 178 CQMLLSIQKYLQEKEKQYKNKH 199


>gi|294852479|ref|ZP_06793152.1| peptidyl-prolyl cis-trans isomerase D [Brucella sp. NVSL 07-0026]
 gi|294821068|gb|EFG38067.1| peptidyl-prolyl cis-trans isomerase D [Brucella sp. NVSL 07-0026]
          Length = 628

 Score = 36.6 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 25/263 (9%), Positives = 63/263 (23%), Gaps = 12/263 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD----I 56
           M   + ++   +I  L    +++ F I  I       M+     T     ++  D     
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            +++  L  Q       + A    +   +  Q      +   +  +     Q A     +
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            +                           D ++N   +      +E   +  K+ +  ++
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSSIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
              +        D               +E+            E            K  Y
Sbjct: 181 ALALYQGESRSADYIDVPAKKADAIPAPSEDVLKAY------FEAHKEDYKAPEYRKISY 234

Query: 237 LLESDLHPQFQNLLKKSQNNTTN 259
           +          +    +Q+  + 
Sbjct: 235 VKLE--PSDIADPAAVTQDEISE 255


>gi|169350365|ref|ZP_02867303.1| hypothetical protein CLOSPI_01132 [Clostridium spiroforme DSM 1552]
 gi|169293148|gb|EDS75281.1| hypothetical protein CLOSPI_01132 [Clostridium spiroforme DSM 1552]
          Length = 331

 Score = 36.6 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/270 (6%), Positives = 67/270 (24%), Gaps = 24/270 (8%)

Query: 17  TTYFVLIIFCIVPIVSYKSWAMSSR-IRTTIN----GEVITDGDISKRIALLKLQKINGE 71
            T  V+  F +    +  +     + +  +++     + I   DI   I      +    
Sbjct: 7   ATALVVTSFLLTGCSNSNTVKEDGKYVVASLSKGKSDKNIFADDIFADI--TNTNRGKSA 64

Query: 72  LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGD 131
             +  +Q+L+ +              D +          +        +    + Q    
Sbjct: 65  YFEAILQKLMDDKF----------PTDKDMEIDASRTVEQIQTYYEAQYGDQAEDQIKTV 114

Query: 132 NHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                Y  +      +V+      +    ++   ++      T       +++     + 
Sbjct: 115 LASSGYSTLDEYEKAMVQAYQKSNFLLDYVKNNFDEVFDDYYTYATPRFASIIKVSIADS 174

Query: 192 LQNQGFVQKRIKDAEESRLRLPKDCNKLEKFAS-KIHDVSIGKAQYL------LESDLHP 244
                    +I+    +            +++      V+ G    +        +    
Sbjct: 175 ENPTQEETAKIEQISTALASGTSFGEVATQYSDDSTTKVNKGGLGVVDTTSGLSSTYGSE 234

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICD 274
               + + +    +       G  ++++  
Sbjct: 235 VESKIFELNAGEVSEAISGTDGYYFVSVTS 264


>gi|91761956|ref|ZP_01263921.1| hypothetical SurA-like protein [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91717758|gb|EAS84408.1| hypothetical SurA-like protein [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 473

 Score = 36.6 bits (82), Expect = 4.7,   Method: Composition-based stats.
 Identities = 37/309 (11%), Positives = 88/309 (28%), Gaps = 22/309 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M +         I  L   FV+I+              +      IN   I+  D    +
Sbjct: 1   MINPFKNFSKKKIGGLLLIFVIIVAFGFGGFGGGFSTGNQNNIAKINNTNISTQDFMDYL 60

Query: 61  ALLKLQKI------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
               L +       +  + +  +  L+  TL   EIE+  ++   + +      +     
Sbjct: 61  NESGLSQQVIKENIDKNIIEELLSTLVSTTLLDLEIEELNLSITEDVLIRKIKNNKNFHD 120

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
            +     +  +K  + +N       I+    ++ K  F    G  +       +  K   
Sbjct: 121 ENGLFQRTLYEKFLLTNNSSAAMFEIRLKNNELQKQLFTYISGGTKSPEFLINKFYKENN 180

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKA 234
            +  +    L +            +K +    + +  + ++  KL++       V I   
Sbjct: 181 KKLDIEYIDLSTFY---------KKKEMFTDNDIKFFVEENAEKLKQDYIDFSFVEISPK 231

Query: 235 QYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEI----ALKAYLSA 290
             L   D +  F + +   +N  +     +     +   D              K  +  
Sbjct: 232 NLLGIDDFNQAFFDKIDDIENQISKNIDFKT---IVKNLDISPTEVNSYINLDNKKIIEN 288

Query: 291 QNTPTKIEK 299
               ++ +K
Sbjct: 289 MIYNSREDK 297


>gi|71083623|ref|YP_266342.1| SurA-like protein [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062736|gb|AAZ21739.1| hypothetical SurA-like protein [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 473

 Score = 36.6 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 37/309 (11%), Positives = 88/309 (28%), Gaps = 22/309 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M +         I  L   FV+I+              +      IN   I+  D    +
Sbjct: 1   MINPFKNFSKKKIGGLLLIFVIIVAFGFGGFGGGFSTGNQNNIAKINNTNISTQDFMDYL 60

Query: 61  ALLKLQKI------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
               L +       +  + +  +  L+  TL   EIE+  ++   + +      +     
Sbjct: 61  NESGLSQQVIKENIDKNIIEELLSTLVSTTLLDLEIEELNLSITEDVLIRKIKNNKNFHD 120

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
            +     +  +K  + +N       I+    ++ K  F    G  +       +  K   
Sbjct: 121 ENGLFQRTLYEKFLLTNNSSAAMFEIRLKNNELQKQLFTYISGGTKSPEFLINKFYKENN 180

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKA 234
            +  +    L +            +K +    + +  + ++  KL++       V I   
Sbjct: 181 KKLDIEYIDLSTFY---------KKKEMFTDNDIKFFVEENAEKLKQDYIDFSFVEISPK 231

Query: 235 QYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEI----ALKAYLSA 290
             L   D +  F + +   +N  +     +     +   D              K  +  
Sbjct: 232 NLLGIDDFNQAFFDKIDDIENQISKNIDFKT---IVKNLDISPTEVNSYINLDNKKIIEN 288

Query: 291 QNTPTKIEK 299
               ++ +K
Sbjct: 289 MIYNSREDK 297


>gi|326795819|ref|YP_004313639.1| hypothetical protein Marme_2571 [Marinomonas mediterranea MMB-1]
 gi|326546583|gb|ADZ91803.1| hypothetical protein Marme_2571 [Marinomonas mediterranea MMB-1]
          Length = 615

 Score = 36.6 bits (82), Expect = 4.8,   Method: Composition-based stats.
 Identities = 6/53 (11%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 3  SKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD 55
            V T+++  ++    + + I F ++        A++  +  +++  ++T+  
Sbjct: 6  HNVMTAMTKHLQQTVAFILFIAFLLLT----PITALADSVVASVDRNIVTENQ 54


>gi|317133521|ref|YP_004092835.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ethanoligenens
           harbinense YUAN-3]
 gi|315471500|gb|ADU28104.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ethanoligenens
           harbinense YUAN-3]
          Length = 338

 Score = 36.6 bits (82), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/250 (6%), Positives = 54/250 (21%), Gaps = 27/250 (10%)

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
           A + L  +       ++                  +N G++       L           
Sbjct: 100 AAESLCTQKKITLAADEKSQVTSYAQNMMSSYTVLKNNGIAEASMKRVLAYN-------- 151

Query: 136 QYLAIQSIWPDVVKNDFML--KYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQ 193
                Q +   + ++ +         + ++     K      + +           +   
Sbjct: 152 -----QYLKDKLFQSYYGTGGSEAVSDADLKDYYTKNFVQIKQIFFSTQDDSGNALSTTD 206

Query: 194 NQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL--LESDLHPQFQNLLK 251
            Q   +K      +           ++         S     Y+     D    F++   
Sbjct: 207 QQAKKKKADNIFGQINADRSNFTALMDANNEDPGMQSSPD-GYVFGKSEDFVQVFKDTAF 265

Query: 252 KSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLR-- 309
             +        +  G   +       +  +      + +            + +   +  
Sbjct: 266 SMKVGDVKLIQSSLGYHILY-----KVALDPNKFDSVKSDVLTDMKNPAFLKMLDNYKGI 320

Query: 310 --SNAIIHYY 317
             +N+ I  Y
Sbjct: 321 TVNNSTISRY 330


>gi|261380077|ref|ZP_05984650.1| conserved hypothetical protein [Neisseria subflava NJ9703]
 gi|284797293|gb|EFC52640.1| conserved hypothetical protein [Neisseria subflava NJ9703]
          Length = 254

 Score = 36.6 bits (82), Expect = 4.9,   Method: Composition-based stats.
 Identities = 22/225 (9%), Positives = 51/225 (22%), Gaps = 6/225 (2%)

Query: 89  EIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVV 148
             E      DS                +  D  +            +             
Sbjct: 25  APEIDPARIDSMVAEVLRQADQHPNQTAKPDGQAIRKDVVTRLQTLEVLKNEAIKAGLDK 84

Query: 149 KNDFMLKYGNLEMEIPANKQKMKNITVREYLIR-TVLFSIPDNKLQNQGFVQKRIKDAEE 207
             +   ++ N+E E  AN+                  F     ++     V     D   
Sbjct: 85  DAEVQNQFKNVEAEFYANQYAAYLERQTAVDDAELRRFYDQQTRIIKLQQVNFASADEVR 144

Query: 208 SRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL-KKSQNNTT-NPYVTQK 265
           +   L       E+   +  +       ++    L PQ        ++ + T  P   + 
Sbjct: 145 AAQELLLKGLSFEELMKRYPNPEQEFDGFISPQQLSPQLATAFADMNRGDVTHEPIQMEN 204

Query: 266 GVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
                 +       +      ++  ++      K+E      +K+
Sbjct: 205 RFYLFKLSAVERDPNAEPFELVRNQIAQAVKRQKVENQIKRILKE 249


>gi|328863809|gb|EGG12908.1| hypothetical protein MELLADRAFT_58819 [Melampsora larici-populina
            98AG31]
          Length = 1803

 Score = 36.6 bits (82), Expect = 5.0,   Method: Composition-based stats.
 Identities = 30/273 (10%), Positives = 81/273 (29%), Gaps = 26/273 (9%)

Query: 49   EVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
            E+IT  D+       K      ++ +     +   +   +   +  +             
Sbjct: 1281 ELITQLDL-------KSLNFYQDISQQIGSTMNEISELIKSEIRREVLESKENEIQELRN 1333

Query: 109  HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
                  L      +   +        K+ +  +    +    +   K    E+EI   ++
Sbjct: 1334 VKNELELGLLKARADHGRVRSERAVEKEKIMEEKSKVERELEELRKKKRMDELEIERFRK 1393

Query: 169  KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
            + + +     +      S+   + + +  V +     E   ++  +   K          
Sbjct: 1394 EKEEMEGSRRVQGVEKESVERERDRLKELVARLESRCEGFEVKGREWETK---------- 1443

Query: 229  VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
                  Q    ++L  + + +   +++N     ++Q G E +      DL      +  L
Sbjct: 1444 ---RILQTEEIAELKVKNRMIESNNKSNERGLELSQNGYERLQEVRNLDLIRYQTKEDEL 1500

Query: 289  SAQNTPTKIE--KHEAEYVKKLRS----NAIIH 315
              +    +IE  K   E  +++R      A++ 
Sbjct: 1501 RKEIRNQEIEFGKRYQEMGREIREAVEGKALVE 1533


>gi|291459856|ref|ZP_06599246.1| putative PPIC-type PPIASE domain protein [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291417646|gb|EFE91365.1| putative PPIC-type PPIASE domain protein [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 342

 Score = 36.6 bits (82), Expect = 5.0,   Method: Composition-based stats.
 Identities = 10/109 (9%), Positives = 21/109 (19%), Gaps = 4/109 (3%)

Query: 199 QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTT 258
           +   K  E              +F+               + +    +Q          +
Sbjct: 196 ESAKKLHESVTASGANFSYFARQFSEDPEI----DRTLYRKEEEDAYYQAAFSLEDGQIS 251

Query: 259 NPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
           +          I   D  D       K  L          +    Y ++
Sbjct: 252 DVISQDGKFYIIKCVDSYDEKATEERKKRLEEAIRSGAFRRSYDSYAEQ 300


>gi|163868048|ref|YP_001609252.1| peptidyl-prolyl cis-trans isomerase D [Bartonella tribocorum CIP
           105476]
 gi|161017699|emb|CAK01257.1| peptidyl-prolyl cis-trans isomerase D [Bartonella tribocorum CIP
           105476]
          Length = 628

 Score = 36.6 bits (82), Expect = 5.0,   Method: Composition-based stats.
 Identities = 20/230 (8%), Positives = 59/230 (25%), Gaps = 17/230 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + ++ + +I  +    +L+ F ++     +    S R   T    +IT  D    +
Sbjct: 1   MLDVIRSAANSWIFRIFLAILLLCFILL-WGIPQLHTKSERDLITSGKSIITIDDYRLAL 59

Query: 61  A---------------LLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           A                   +    ++      +L    L  ++  K  I+   +T+ + 
Sbjct: 60  ADQSARLAQAAHLGRMFTPNEMQQYQIPAFVFNQLQQNVLLDEQARKMKISLSKDTIAHT 119

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
                +   ++                  +          +           +++     
Sbjct: 120 IGSD-KMFQINGTFNKDLFYNYLQHLRIGESAFLNYYTKQEKRNQLIAALLSDMKAPNLF 178

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
            K        +      ++               ++  +  +S  R P+ 
Sbjct: 179 YKALALYQEEKRSADYLIIDLKEQTIADPDHETLQKWFETHQSEFRAPEY 228


>gi|308184755|ref|YP_003928888.1| putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D)
           [Helicobacter pylori SJM180]
 gi|308060675|gb|ADO02571.1| putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D)
           [Helicobacter pylori SJM180]
          Length = 487

 Score = 36.6 bits (82), Expect = 5.0,   Method: Composition-based stats.
 Identities = 35/317 (11%), Positives = 90/317 (28%), Gaps = 21/317 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +    +  I   +      S+++ S     +    I+  ++++  
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEY 60

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             LK        +    +EL  + +K   +EKS    DS          A + GL A   
Sbjct: 61  RRLKDAYAESIPD---FKELTEDQIKAMHLEKSA--LDSLINQALLRNLALDLGLGATKQ 115

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
               + +             +     + ++ +  K+    +E     QK+  +  +    
Sbjct: 116 EVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVEKLLILQKISALFPKTTTP 175

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
                     KLQ++  +     +  +       + K     +K   K          + 
Sbjct: 176 LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFD 235

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
              +     +      +N  +             +  +  L    +++  +    +  K 
Sbjct: 236 ASLEKTDLKELEEYYHKNKVS------------YLDKEGKLQDFKSVQEQVKHDLSMQKA 283

Query: 298 EK-HEAEYVKKLRSNAI 313
            +     Y+   ++NA 
Sbjct: 284 NEKALRSYIALKKANAQ 300


>gi|225621111|ref|YP_002722369.1| hypothetical protein BHWA1_02207 [Brachyspira hyodysenteriae WA1]
 gi|225215931|gb|ACN84665.1| hypothetical protein BHWA1_02207 [Brachyspira hyodysenteriae WA1]
          Length = 491

 Score = 36.6 bits (82), Expect = 5.0,   Method: Composition-based stats.
 Identities = 39/331 (11%), Positives = 85/331 (25%), Gaps = 43/331 (12%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTTINGEVITD----------GDISKRIALLKLQKING 70
           V I+  I  +V     +  +    ++NG+ I              I      L +Q  N 
Sbjct: 27  VSILLIIYFLVVDTRGSQKTPTIGSVNGKPIYYTSTSPYGRAFRQIEGYYQQLGIQINNE 86

Query: 71  E---LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED-FSSFLDK 126
               +E +A +  +   L      K+    D+  V     Q     G+  +  + SF+  
Sbjct: 87  MYTYIEDLAFRRAVSTMLLNDVARKNINVSDNFVVEAMKSQFIDTNGVYNQMAYESFIKN 146

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT---- 182
               +    +    + I    V  +        ++E+    +K       E +       
Sbjct: 147 SSQSEKVKIEKDLKEDILSQTVSAELFTSVKLNDLEMQREYKKNLTKRDIEMVYINASEI 206

Query: 183 ---------VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-------SKI 226
                     L     +   N           +   +      +     +        K 
Sbjct: 207 VQSNQVADADLEKYFTDNKTNFAQADISWIITQSGGVADNLYKSLKADISLFEKTAMEKS 266

Query: 227 HDVSIGKAQYLLESDLHPQ------FQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGG 280
            D +  K  YL    +  +      F N      +N   P         + + D R    
Sbjct: 267 FDTNNYKLGYLTRMQMPNEDFANKIFANNNNTKGSNLLQPIYANGYYYIVLVNDIRIPEK 326

Query: 281 EIALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
              +   +        +  +    ++  ++ 
Sbjct: 327 YTDVNKEV---LRREYLNANMNTLLEAEKTK 354


>gi|189462485|ref|ZP_03011270.1| hypothetical protein BACCOP_03174 [Bacteroides coprocola DSM 17136]
 gi|189430646|gb|EDU99630.1| hypothetical protein BACCOP_03174 [Bacteroides coprocola DSM 17136]
          Length = 711

 Score = 36.6 bits (82), Expect = 5.0,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 2/78 (2%)

Query: 237 LLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTK 296
           +  +          K   N  + P     GV  I + ++     +   K           
Sbjct: 628 VTRASEPAISAYASKTELNKVSAPIKGNAGVYMIQVYNQEKSTEKFDAKKE--ETALSNM 685

Query: 297 IEKHEAEYVKKLRSNAII 314
             ++  + + +LR  A I
Sbjct: 686 AARYAGQCIYELRDKAEI 703


>gi|317499344|ref|ZP_07957614.1| hypothetical protein HMPREF0996_02598 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893379|gb|EFV15591.1| hypothetical protein HMPREF0996_02598 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 369

 Score = 36.6 bits (82), Expect = 5.1,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 64/238 (26%), Gaps = 3/238 (1%)

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN-TGLSAEDFSSFLDK 126
               +++     +I +  + + +      ++         Q   + T  + +     + K
Sbjct: 81  KKITMQQSVKDSVINQLKQIKVLAAHADDYNVKLTKSEKKQIKESVTAFAKDSTGKKVMK 140

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
           +   D    Q L  +S     V    + K      +  A   K+  +        +    
Sbjct: 141 KTEADKDMIQKLYEESTIASKVMQAIIKKANVTVTDDEAKTVKVYKLVFTTKTTDSKTGK 200

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
             D     +    K+ K A +   +     +  +KF+    +                  
Sbjct: 201 EKDMTAAEKKDQLKKAKSALKMIKKGQSISSVAKKFSVNSDNEESYTKGKATLGT--KFE 258

Query: 247 QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
               K  +N  +           I + +  D     + K+ L  +      EK   ++
Sbjct: 259 TAAAKLKKNQVSGVVELDDAYVIIKMLNPNDTTAAASNKSTLLQEKQQAAYEKVYKKW 316


>gi|257467204|ref|ZP_05631515.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315918334|ref|ZP_07914574.1| predicted protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|313692209|gb|EFS29044.1| predicted protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 549

 Score = 36.6 bits (82), Expect = 5.1,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 55/173 (31%), Gaps = 5/173 (2%)

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS-IPDNKLQNQGFVQKRI 202
           +          +    E+E+    Q   N   +   I   +         ++   ++K+ 
Sbjct: 272 YGKAFFEKLKSEVKIDEVELSRFFQANHNRYNQHASIDVDVAVLKIVPSKEDIAAIEKKA 331

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP-- 260
           ++  +S  +        +        V   +  +  +  +  +F+     S+     P  
Sbjct: 332 EETLKSLKKENFAKIGADLQKKSPETVIYEELGWFEKGAMVKEFEEAAFSSKEAQIYPKV 391

Query: 261 YVTQKGVEYIAICDKRDLGGEIA--LKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             TQ G   + I + ++   + A  L   +++Q +  K  K      +KL   
Sbjct: 392 ISTQFGKHLLYIQEVQENKVKAAHILFREVASQASIDKSLKEAESIKEKLDKK 444


>gi|149701546|ref|XP_001497011.1| PREDICTED: multimerin 1 [Equus caballus]
          Length = 1221

 Score = 36.6 bits (82), Expect = 5.1,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 62/192 (32%), Gaps = 13/192 (6%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQE-- 89
           +  +      + + +NG  I   ++SKR  LL+      +    A+   I E   + E  
Sbjct: 663 AAATSKKVENMISVVNGLNILIKELSKRHNLLR---NEVQSRGDALDRRINEYALEMEDG 719

Query: 90  ----IEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLA----IQ 141
               +       D    NY   +       + E                 Q+      IQ
Sbjct: 720 LNKTMTIINNAIDFIQDNYMLKETLSTIKYNPEVHHKCTQNMETILTFIPQFQRLNDSIQ 779

Query: 142 SIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
            +  D  + +F+L+   +  +I  +++  ++   +   +     S      QN   ++++
Sbjct: 780 ILVNDDQRYNFVLQVAKVLADISKDEKLNQSNFQKISQMFNESTSQVIKYQQNMSHLEEK 839

Query: 202 IKDAEESRLRLP 213
           I  A +      
Sbjct: 840 ILSATKISKNFE 851


>gi|291548689|emb|CBL24951.1| SpoIID/LytB domain [Ruminococcus torques L2-14]
          Length = 299

 Score = 36.6 bits (82), Expect = 5.2,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 50/213 (23%), Gaps = 9/213 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDIS--K 58
           M   +   +  F   L   F+L     V I    +   +     ++    I  G+     
Sbjct: 1   MRDTIRNKIKLFFAFLIILFLLPYIISVFINGKNAVQGADSDNASVYLAGILAGETDGGY 60

Query: 59  RIALLKLQK---INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG- 114
            I  LK Q              ++ I++    Q   K               Q A+ T  
Sbjct: 61  EIEALKAQAVVLRTELYRTEKEKQTILDKCLTQTQMKKKWGPKYEENLKKCQQAAQETKG 120

Query: 115 ---LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMK 171
                 E F+     Q            + +     +           E EI  +  + K
Sbjct: 121 IVLWYHETFAWAPFHQSSNGKTRDVQEVLGNADYPYITAKECPLDKAAEDEIQVHLIEYK 180

Query: 172 NITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
            I  R                      + +  D
Sbjct: 181 EIQKRCREFLVAEEQKKAENGYGYEDFEIQEWD 213


>gi|116252238|ref|YP_768076.1| peptidyl-prolyl cis-trans isomerase D [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115256886|emb|CAK07980.1| putative peptidyl-prolyl cis-trans isomerase D [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 630

 Score = 36.6 bits (82), Expect = 5.2,   Method: Composition-based stats.
 Identities = 24/396 (6%), Positives = 77/396 (19%), Gaps = 86/396 (21%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVI--------T 52
           M   +  +   ++  L    ++  F +  +        +S    T+  + +         
Sbjct: 1   MFHILRRAAQTWVAKLLLLLLVASFGVWGVSHELLSGGNSTTVVTVGDQHVDVNEFHLAY 60

Query: 53  DGDISKRIALLKLQKINGELE-----KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
              ++        +    +       +  + +L+      Q  E   +    + +     
Sbjct: 61  QRQVANLSQQFGTRLTPEQARAFGVEQQVLAQLVAGASLDQLAEDMNLGLSEDRLAQLIA 120

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM-------------- 153
                  ++          +       +     +     V                    
Sbjct: 121 DDPAFKAVNGRFDRELFISRLQNAGIRQDDYIKERSKVAVRSQVVDAISNGFTAPKTLVD 180

Query: 154 ----------------------LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNK 191
                                         ++ A   +      R    R +++      
Sbjct: 181 ALKLYGDESRSVEYLLLTNANIEPIKAPADDVLATWFEGVKQRYRAPEYRKLVYLKLQPG 240

Query: 192 LQNQGFV--------------------QKRIKDAEESRLRLPKDCNKLEKFASKIHDVSI 231
                                      + R  +      +      +    +    D  +
Sbjct: 241 DIADAATVTDDQIHEAFDKSKDTYRTPESRTIEQLTFASKDLAAAAETALKSGTSFDQLV 300

Query: 232 GKAQYLLESDLHPQFQNLLKKSQ------------NNTTNPYVTQKGVEYIAICDKR--D 277
                     L  +F       Q              TT       G   + + + +   
Sbjct: 301 SDQGKTASDVLLGEFTEDKVPDQAVADAAFAVSRDGGTTPVVDGSFGPVILRVTNIKSET 360

Query: 278 LGGEIALKAYLSAQN-TPTKIEKHEA--EYVKKLRS 310
                 +K  +  Q       ++     + ++ LR+
Sbjct: 361 AKNFDEVKEDIRKQLALSNASQEVINVHDRIEDLRA 396


>gi|257453206|ref|ZP_05618505.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 3_1_5R]
 gi|317059740|ref|ZP_07924225.1| predicted protein [Fusobacterium sp. 3_1_5R]
 gi|313685416|gb|EFS22251.1| predicted protein [Fusobacterium sp. 3_1_5R]
          Length = 549

 Score = 36.6 bits (82), Expect = 5.3,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 55/173 (31%), Gaps = 5/173 (2%)

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS-IPDNKLQNQGFVQKRI 202
           +          +    E+E+    Q   N   +   I   +         ++   ++K+ 
Sbjct: 272 YGKAFFEKLKSEVKIDEVELSRFFQANHNRYNQHASIDVDVAVLKIVPSKEDIAAIEKKA 331

Query: 203 KDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNP-- 260
           ++  +S  +        +        V   +  +  +  +  +F+     S+     P  
Sbjct: 332 EETLKSLKKENFAKIGADLQKKSPETVIYEELGWFEKGAMVKEFEEAAFSSKEAQIYPKV 391

Query: 261 YVTQKGVEYIAICDKRDLGGEIA--LKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             TQ G   + I + ++   + A  L   +++Q +  K  K      +KL   
Sbjct: 392 ISTQFGKHLLYIQEVQENKVKAAHILFREVASQASIDKSLKEAESIKEKLDKK 444


>gi|241896492|ref|ZP_04783788.1| peptidylprolyl isomerase [Weissella paramesenteroides ATCC 33313]
 gi|241870214|gb|EER73965.1| peptidylprolyl isomerase [Weissella paramesenteroides ATCC 33313]
          Length = 353

 Score = 36.6 bits (82), Expect = 5.3,   Method: Composition-based stats.
 Identities = 25/294 (8%), Positives = 76/294 (25%), Gaps = 39/294 (13%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKI 75
           +    + ++  I   V   +W +  +   T +   ++  +  K++      +        
Sbjct: 1   MWKKVLGVLVVIAAGVGLAAWGIGPKSLVTTDAGNVSQAEYYKKLKSSPEGQKE------ 54

Query: 76  AVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFK 135
            +  +I++ +  ++                          +   + S   +    +   +
Sbjct: 55  -LANMIIQKVLDKKYGDKVSKKSIE----------SQYNDAKSQYGSQFSQVLSQNGMTE 103

Query: 136 QYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQ 195
                      + K   +               K  +   +EY  +  +  I  +   + 
Sbjct: 104 DSFRDSLRIQALEKQAVIAD--------KHYSNKQLHKAYKEYQPKVSVSVILTSSEDDA 155

Query: 196 GFVQKRIKDAEESRLRLPKDCNKLEKFASKIH-DVSIGKAQYLLESDLH---PQFQNLLK 251
             +            +        ++ +   +   + GK      +D +          K
Sbjct: 156 KKI-------IAQLDKGGDFAKLAKEKSIDTNTKKNGGKMTSFDSTDTNLEDDFKTAAFK 208

Query: 252 KSQNNTTN-PYVT--QKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEA 302
             +   T  P  +   +G   I +  K D     ALK+ + +      +     
Sbjct: 209 LKKGEYTKTPVKSTSSQGYFIIKMNSKSDKKSFSALKSKMKSILVEKTMSDTTE 262


>gi|302534870|ref|ZP_07287212.1| lipoprotein [Streptomyces sp. C]
 gi|302443765|gb|EFL15581.1| lipoprotein [Streptomyces sp. C]
          Length = 212

 Score = 36.6 bits (82), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/125 (11%), Positives = 39/125 (31%), Gaps = 11/125 (8%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGE-----------LEKIAVQELIV 82
            S          + GE IT   +  ++  ++  +   E           LE++ + ++I 
Sbjct: 27  CSGETRPGTAAVVGGERITTSALQAQVGDVRAAQDKSEQGAQLIGATAGLERLKLNKMIQ 86

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
             + ++  E +G++     V           G       + L +  +     +     + 
Sbjct: 87  SAVLERAAEDAGLSVSPKEVQDVRKAQLEQLGGEKALRDAALQQAQLAPGQIEADTRFKL 146

Query: 143 IWPDV 147
           +   +
Sbjct: 147 LRDKL 151


>gi|242308919|ref|ZP_04808074.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239524583|gb|EEQ64449.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 489

 Score = 36.6 bits (82), Expect = 5.3,   Method: Composition-based stats.
 Identities = 40/315 (12%), Positives = 82/315 (26%), Gaps = 31/315 (9%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIA 61
             K    L   I + T  F+   F      S+ S + +      +    ++   + +  A
Sbjct: 5   MQKHKKYLMVIIWISTIAFIGAGFVGWGSYSFSSTSNA---VAVVGDIKVSIDKMQREYA 61

Query: 62  LLK-------------LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
            L               Q     +E+ A+  LIV+ L        G+      +      
Sbjct: 62  RLYNIYNQLVGGTLDDEQAKKMGIEEQAINNLIVKALMLNYAYDLGLRVSKEEIIQEITS 121

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
                     D   +           K +         + K D +L      +EI A   
Sbjct: 122 IEGFQNKGKFDEQIYKQTLKDNQLKPKDFEEGIEEGLLLQKLDALLNIPLTPLEIEALGA 181

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHD 228
                 +    +      +   K +      +  KD  +++         +   +  + +
Sbjct: 182 AYSMEDLVHIEVINKKDIVFTPKEEEIKKYWENNKDIYQTQRGYEISSIFIPLDSIAVEE 241

Query: 229 VSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYL 288
            ++           +  F+N    S          +       + +K       A K  L
Sbjct: 242 NAL--------EQYYKDFKNQFLDSNGQIIPFAQAKD-----KVIEK--FRDSQAQKEAL 286

Query: 289 SAQNTPTKIEKHEAE 303
               +  K E  EA+
Sbjct: 287 KEYISLRKGENQEAK 301


>gi|218768878|ref|YP_002343390.1| hypothetical protein NMA2141 [Neisseria meningitidis Z2491]
 gi|121052886|emb|CAM09238.1| hypothetical protein NMA2141 [Neisseria meningitidis Z2491]
          Length = 239

 Score = 36.6 bits (82), Expect = 5.4,   Method: Composition-based stats.
 Identities = 11/166 (6%), Positives = 45/166 (27%), Gaps = 9/166 (5%)

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           V     + +      E     ++ + ++                  Q     ++  + A+
Sbjct: 73  VQNRFKIAEASFYAEEYVRFLERSETVSESALRQFYERQIRMIKLQQVSFATEEEARQAQ 132

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTT-NPYVTQ 264
           +  L+       ++++ +           +++   L     +     ++ + T +P    
Sbjct: 133 QLLLKGLSFEGLMKRYPNDEQAFD----GFIMAQQLPEPLASQFAAMNRGDVTRDPVKLG 188

Query: 265 KGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
           +      + +     D      ++  L       K        +++
Sbjct: 189 ERYYLFKLSEVGKNPDAQPFELVRNQLEQGLRQEKARLKIDAILEE 234


>gi|270308377|ref|YP_003330435.1| protein export protein [Dehalococcoides sp. VS]
 gi|270154269|gb|ACZ62107.1| protein export protein [Dehalococcoides sp. VS]
          Length = 421

 Score = 36.6 bits (82), Expect = 5.4,   Method: Composition-based stats.
 Identities = 25/288 (8%), Positives = 72/288 (25%), Gaps = 33/288 (11%)

Query: 48  GEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
           G  I++ +I   I           +  I    L+   LK +  +               +
Sbjct: 119 GYTISEDEIDTAIEE-NSLNDVPAVRDIVRASLLTNMLKTEYFDPQVPQTAEQREALAML 177

Query: 108 QHARN-------TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLE 160
             + N          + E+F++   +  +  N      AI     + + + +        
Sbjct: 178 LESENAASEVLAGITTDEEFAAKAAELSLESNTKTDEGAIDFKPANTITSLYGSAILEKY 237

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFV---------QKRIKDAEESRLR 211
           +                   R         +  +   +         ++   + +     
Sbjct: 238 VFSTTGYDYTLVQDADVSKQRAYWLIEVLERKTDSEQIHTLGMLLPSEQVALEVKARLEA 297

Query: 212 LPKDCNKLEKFASKIH-DVSIGKAQYLLESDLHP---QFQNLLKKSQNNTTNPYV----- 262
                +   +++   + + + G   ++  S +               N   +P       
Sbjct: 298 GEDWGDLAVEYSQLANVEENRGDMDWITFSSVPENVADIIFATDVELNTVLDPIQDDTNY 357

Query: 263 TQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRS 310
           T+ G   + +    +          L       K+E+    +   L++
Sbjct: 358 TRGGCWIVRLKSIDENRELNEDDRTL---LINNKLEQ----WTTDLKN 398


>gi|317014385|gb|ADU81821.1| hypothetical protein HPGAM_05060 [Helicobacter pylori Gambia94/24]
          Length = 487

 Score = 36.6 bits (82), Expect = 5.5,   Method: Composition-based stats.
 Identities = 35/317 (11%), Positives = 88/317 (27%), Gaps = 21/317 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +    +  I   +      S+++ S     +    I+  ++++  
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEY 60

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             LK        +    +EL  + +K   +EKS    DS          A + GL A   
Sbjct: 61  RRLKDAYAESIPD---FKELTEDQIKAMHLEKSA--LDSLINQALLRNFALDLGLGATKQ 115

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
               + +             +     + ++ +  K+    +E     QK+  +  +    
Sbjct: 116 EVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVEKLLIIQKISALFPKTTTP 175

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
                     KLQ++  +        +       + K      K   K          + 
Sbjct: 176 LEQSSLSLWAKLQDKLDILILNPSDVKISLNEEEMKKYYENHRKDFKKPTSFKTRSLYFD 235

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
              +     +      +N  +             +  +  L    +++  +    +  K 
Sbjct: 236 ASLEKTDLKELEEYYHKNKVS------------YLDKEGKLQDFKSVQEQVKHDLSMQKA 283

Query: 298 EK-HEAEYVKKLRSNAI 313
            +     Y+   ++NA 
Sbjct: 284 NEKALRSYIALKKANAQ 300


>gi|218281164|ref|ZP_03487690.1| hypothetical protein EUBIFOR_00251 [Eubacterium biforme DSM 3989]
 gi|218217610|gb|EEC91148.1| hypothetical protein EUBIFOR_00251 [Eubacterium biforme DSM 3989]
          Length = 341

 Score = 36.6 bits (82), Expect = 5.5,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 66/234 (28%), Gaps = 18/234 (7%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKS 93
              + + ++  +I+ + IT  D+    A      I    +   + + I       E  K 
Sbjct: 36  AKSSNNEQVVASIDKDDITANDLYDESAPYDGSTIYNMYKNAVIDQSI-------ETTKD 88

Query: 94  GITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFM 153
                +   +      ++ +       +S L K G           I S+    +   + 
Sbjct: 89  IKKQANTLESNIKSNASKQSDDYESTLTSELAKYGYSSFEQLNDYCITSVKEKEMNKKY- 147

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLP 213
                   E+    ++    T         +  +  +   N    + + K+  +  L   
Sbjct: 148 --ITKHFDEVKKAWEEKSPRT-------VSIIKMEVSDADNLTETETKKKNNIDKALEKE 198

Query: 214 KDCNKLEKFASKIH-DVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKG 266
              +  + F+   +     G A Y+  +       +      +  T     +KG
Sbjct: 199 SFADVAKAFSEDSNTANKKGFAGYVDSNSTSSDSSSTSTVPADVVTAAINLKKG 252


>gi|145493441|ref|XP_001432716.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399830|emb|CAK65319.1| unnamed protein product [Paramecium tetraurelia]
          Length = 705

 Score = 36.6 bits (82), Expect = 5.6,   Method: Composition-based stats.
 Identities = 25/207 (12%), Positives = 67/207 (32%), Gaps = 7/207 (3%)

Query: 45  TINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNY 104
            +N +VIT  +    +   K Q     + +  ++EL  E  +K +  ++ +    N ++ 
Sbjct: 331 RVNEDVITKQEFENLLRDAKQQ-----IRQEVLEELKREQDEKMQQYETKLQTKYNPLDE 385

Query: 105 FFVQHA--RNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
              Q    +      +++  +L +    ++  + Y  I      +            + E
Sbjct: 386 QIAQEYLTQVKFQRYKEYLDYLMEYYYNNDKQEYYKLIDEYNQRLKDTALNGMVEVQKQE 445

Query: 163 IPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
           I   +   K   V +     +       +L++   ++ ++++ +E   R     NK E  
Sbjct: 446 ILKLQAITKKKIVEQNQQLEIALYNQKKELKDIIPIKNKLQERKEDYQRFQIQQNKHEYK 505

Query: 223 ASKIHDVSIGKAQYLLESDLHPQFQNL 249
               +                 + +  
Sbjct: 506 FQFANVNLTIDPFEFKTDQQVDEIRKQ 532


>gi|331087208|ref|ZP_08336278.1| hypothetical protein HMPREF0987_02581 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408894|gb|EGG88355.1| hypothetical protein HMPREF0987_02581 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 465

 Score = 36.6 bits (82), Expect = 5.7,   Method: Composition-based stats.
 Identities = 22/219 (10%), Positives = 57/219 (26%), Gaps = 20/219 (9%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI--ALLKLQKING 70
           +K L  +F++I F ++ I         + +            ++  R+  A        G
Sbjct: 1   MKKLKIFFIVIFFVLLAIPVVTFNTEENAV-----------SEVDNRMLAANPVSAIREG 49

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
           E    A++  + + +  +       T   + + +  +  +   G     F +       G
Sbjct: 50  EDATQAIENYVNDRIGLRNEMIKLYTVGHDKIFHEMIHPSYVYGQDGYVFLNTGGNPVFG 109

Query: 131 DNHFKQYLAIQSIWPDVVKNDF-------MLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
           D H      I++I       +          K   L+ E+            +       
Sbjct: 110 DYHIAFADMIKTIQDYCEAREIPFLFVFEPAKTTVLQEELEEGWNYDNRWVQQFLKELDQ 169

Query: 184 LFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKF 222
                 +  +      +  +     +            +
Sbjct: 170 REIHYVDNTEILEEKTEEGEAVFNKKYDGGHWNELGAFY 208


>gi|306830936|ref|ZP_07464098.1| peptidyl-prolyl cis-trans isomerase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325977825|ref|YP_004287541.1| foldase protein PrsA [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|304426959|gb|EFM30069.1| peptidyl-prolyl cis-trans isomerase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325177753|emb|CBZ47797.1| foldase protein PrsA [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 368

 Score = 36.6 bits (82), Expect = 5.7,   Method: Composition-based stats.
 Identities = 26/315 (8%), Positives = 69/315 (21%), Gaps = 43/315 (13%)

Query: 14  KLLTTYFVLIIFCIVPIVS---YKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING 70
           K      + +   ++         +    ++   T+ G+ IT  D               
Sbjct: 31  KAFKGVSIAVASALIGAGVTYLATNSNSETKALVTMKGDTITVSDFYNAAKSTSSS---- 86

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
              +  +  LI+  + + +        D +           ++  SA   +         
Sbjct: 87  ---QQTMLNLILSRVFEDQYGDKVSDDDVSEAYNTTASSYGSSFSSALSAAGLTSD--TY 141

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
               +  + ++       K     K      E          I + +      +      
Sbjct: 142 KQQIRTSMLVEYAVKQAAKKKLTTKNYKAAYEDYNPDTTAIVIALSDEDTANSVHDQATA 201

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL 250
              +   + K    A+++                            L E  ++  F    
Sbjct: 202 DGADFETIAKDNTTADKTEYTFDSADTD------------------LPEDVMNAAFDQ-- 241

Query: 251 KKSQNNTTNPYVT------QKGVEYIAICDKRDLGGE-IALKAYLSAQNTPTKIE--KHE 301
              + + ++                +    K +   +    K  L              +
Sbjct: 242 --DEGSVSDVIKVLDTSTYSYTYYIVKTTKKTEKDSDWKTYKKRLKKIILAQYESDTDFQ 299

Query: 302 AEYVKKLRSNAIIHY 316
            E + K    A +  
Sbjct: 300 NEVIAKALDKANVKI 314


>gi|288904884|ref|YP_003430106.1| peptidylprolyl isomerase [Streptococcus gallolyticus UCN34]
 gi|288731610|emb|CBI13165.1| putative peptidylprolyl isomerase [Streptococcus gallolyticus
           UCN34]
          Length = 369

 Score = 36.6 bits (82), Expect = 5.7,   Method: Composition-based stats.
 Identities = 26/315 (8%), Positives = 69/315 (21%), Gaps = 43/315 (13%)

Query: 14  KLLTTYFVLIIFCIVPIVS---YKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING 70
           K      + +   ++         +    ++   T+ G+ IT  D               
Sbjct: 31  KAFKGVSIAVASALIGAGVTYLATNSNSETKALVTMKGDTITVSDFYNAAKSTSSS---- 86

Query: 71  ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
              +  +  LI+  + + +        D +           ++  SA   +         
Sbjct: 87  ---QQTMLNLILSRVFEDQYGDKVSDDDVSEAYNTTASSYGSSFSSALSAAGLTSD--TY 141

Query: 131 DNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDN 190
               +  + ++       K     K      E          I + +      +      
Sbjct: 142 KQQIRTSMLVEYAVKQAAKKKLTTKNYKAAYEDYNPDTTAIVIALSDEDTANSVHDQATA 201

Query: 191 KLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLL 250
              +   + K    A+++                            L E  ++  F    
Sbjct: 202 DGADFETIAKDNTTADKTEYTFDSADTD------------------LPEDVMNAAFDQ-- 241

Query: 251 KKSQNNTTNPYVT------QKGVEYIAICDKRDLGGE-IALKAYLSAQNTPTKIE--KHE 301
              + + ++                +    K +   +    K  L              +
Sbjct: 242 --DEGSVSDVIKVLDTSTYSYTYYIVKTTKKTEKDSDWKTYKKRLKKIILAQYESDTDFQ 299

Query: 302 AEYVKKLRSNAIIHY 316
            E + K    A +  
Sbjct: 300 NEVIAKALDKANVKI 314


>gi|170721642|ref|YP_001749330.1| hypothetical protein PputW619_2461 [Pseudomonas putida W619]
 gi|169759645|gb|ACA72961.1| conserved hypothetical protein [Pseudomonas putida W619]
          Length = 213

 Score = 36.6 bits (82), Expect = 5.7,   Method: Composition-based stats.
 Identities = 17/155 (10%), Positives = 41/155 (26%), Gaps = 11/155 (7%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISK-----------RIALLKLQKINGELEKIAVQELIV 82
                +      +NG  I    + +            +  ++   +   L   A+ ELI 
Sbjct: 13  AKAGWADSPAARVNGVDIGLLRLERYFSEYLQAQGRAVTSIRNPTLYKRLRSQALDELID 72

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           + L  QE ++ GI      V+    +        A       +       +        +
Sbjct: 73  KELLWQEAQRRGIAISDEQVSAQLGEVEAAFSSPALFERRLAEAGFDRAAYADYLHRELA 132

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
                 +   + +    E+E      + +    + 
Sbjct: 133 AQQVYAQLSAVAEPTQAEVEAFYQANQERLQGAQN 167


>gi|313229342|emb|CBY23929.1| unnamed protein product [Oikopleura dioica]
          Length = 664

 Score = 36.2 bits (81), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/209 (9%), Positives = 58/209 (27%), Gaps = 1/209 (0%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           + G  +   D+  R      Q+   +  +  + E+  +    +++ K       +     
Sbjct: 386 VGGPEVIQLDVESRKKSASKQRSTKKATRSNLGEMYDDRQFLEKLAKDSALMKDHNGKNS 445

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
             +  ++     +D + F  +Q       ++   ++ +  + +K D       L+ +   
Sbjct: 446 VGELIKHGIRYLDDRADFWTQQKPEYTRSRERTMLKPLPVESIKADLSAAIKLLDDKEFE 505

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
              K              +   P      Q  +      A  +  +  +   + +K  + 
Sbjct: 506 ESLKAVIDINTNVETHPDVNKGPMMC-ALQADINSVYGQALLALGKNEESITRHKKELAA 564

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKKSQ 254
                I   +     +L   +        
Sbjct: 565 AKKSGITDLKVRAMDNLAEAYVKNQNYKH 593


>gi|198435360|ref|XP_002122992.1| PREDICTED: similar to Rho interacting protein 3 [Ciona intestinalis]
          Length = 2413

 Score = 36.2 bits (81), Expect = 5.8,   Method: Composition-based stats.
 Identities = 25/260 (9%), Positives = 79/260 (30%), Gaps = 10/260 (3%)

Query: 53   DGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN 112
              D++K  A LK  +      +  V +LI +    ++  K+        ++       + 
Sbjct: 1048 QHDVNKLSADLKTSQAATTRLEDKVAKLIAQNQVDEDCNKTLQ----EQLHKEKETCKKL 1103

Query: 113  TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKN 172
              +  E        +       +             +     +    ++ +   K K + 
Sbjct: 1104 RKILEEHDDVVSANEKQLHETKQALDQYSLQLRIAEEGRLASQRTVHDLTVELRKAKDEI 1163

Query: 173  ITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG 232
               ++   +        +        +K + D EE RL+         K      +  +G
Sbjct: 1164 QKQKQSTDQV-----TRDLRARLTTAEKELTDIEEIRLKHKDAPESSFKAKLTELEAEMG 1218

Query: 233  KAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAIC-DKRDLGGEIALKAYLSAQ 291
                ++ + L    +       +N ++   + + +  +    D+++   +   + +   +
Sbjct: 1219 GTGQMIAARLSALERPRRDSDSSNASDKETSSQKLHRLEAEIDRKNKEIKSMNEQFKEME 1278

Query: 292  NTPTKIEKHEAEYVKKLRSN 311
                +  +   + + +LR+ 
Sbjct: 1279 QRENEANEEFTKKLNELRAR 1298


>gi|83589867|ref|YP_429876.1| hypothetical protein Moth_1019 [Moorella thermoacetica ATCC 39073]
 gi|83572781|gb|ABC19333.1| Protein of unknown function DUF218 [Moorella thermoacetica ATCC
           39073]
          Length = 461

 Score = 36.2 bits (81), Expect = 5.8,   Method: Composition-based stats.
 Identities = 22/221 (9%), Positives = 56/221 (25%), Gaps = 15/221 (6%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIV-SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI 68
              +K L    +L I        S +S          +NG+ I    + K +  ++L   
Sbjct: 208 RILLKALIVMTLLSILAFTACARSSQSPKEIEEAVALVNGQPINKEALEKEMLRMQLMAE 267

Query: 69  --------------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTG 114
                                +      +    +   +S +T + N      V+      
Sbjct: 268 MRVQSGTVSIDEFLKQSGRDWSKMSPEEKRYYLRAKRQSEMTGEKNEAFNRLVREEVLYQ 327

Query: 115 LSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNIT 174
            + ++       +        + L+ +S+   +       +   L+       + M   +
Sbjct: 328 EAVKEGYEVSIDEARRRYQEIETLSQESLKEALKDAKAKEEIERLQEVEKKFMELMGFTS 387

Query: 175 VREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
                   V   +    +       K     +   +R  + 
Sbjct: 388 PEALTEYRVQRLMRTMPISRLREKFKADWGNKHPEIRGDEF 428


>gi|167033456|ref|YP_001668687.1| SurA domain-containing protein [Pseudomonas putida GB-1]
 gi|166859944|gb|ABY98351.1| SurA domain [Pseudomonas putida GB-1]
          Length = 213

 Score = 36.2 bits (81), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 44/155 (28%), Gaps = 11/155 (7%)

Query: 34  KSWAMSSRIRTTINGEVITDGDISK-----------RIALLKLQKINGELEKIAVQELIV 82
              + +      +NG  I    + +            +  ++   +   L   A+ ELI 
Sbjct: 13  ARASWADVPAARVNGVEIELLRLERYFSEYLDAQGRAVTSIRNPGLYKRLRDQALDELID 72

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           + L  QE ++ GI      V+    +     G  A       +       + +      +
Sbjct: 73  KELLWQEAQRQGIAVSDERVSAHVGEVEAAFGSPAVFERRLAEAGFDRAQYTEYTRQDMA 132

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
                 +   +      E+E   +  K +    + 
Sbjct: 133 AQQVYAQLSAVDAPSQGEVEAFYDANKERLQGAQN 167


>gi|268680048|ref|YP_003304479.1| peptidyl-prolyl cis-trans isomerase D,- like protein
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268618079|gb|ACZ12444.1| putative peptidyl-prolyl cis-trans isomerase D,- like protein
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 486

 Score = 36.2 bits (81), Expect = 5.9,   Method: Composition-based stats.
 Identities = 46/386 (11%), Positives = 102/386 (26%), Gaps = 77/386 (19%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI- 60
             +    L   I + T  FV   F             +S     +    I+  +      
Sbjct: 5   MQRHKKYLVVTIWISTIAFVGAGFVGWGAYDLNQDRAAS--VAKVGNRTISVQEFQSAYA 62

Query: 61  ------------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF-- 106
                        L + Q     L+KI +  LI +TL     ++ G+             
Sbjct: 63  SHYNFYNNLLQGQLTQEQAEQMGLDKIVMSSLINQTLLLNYADELGLLVSKEETMERLKN 122

Query: 107 -VQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK---------------- 149
                 N   + E + + L    I  N ++  LA + +   +                  
Sbjct: 123 NPNFQENGVFNKELYYTILKSNRIKPNDYEHELAKEILHTKLENIFKLPASDKEIEMFAS 182

Query: 150 -------------NDFMLKYGNLEMEIPANKQKMKNITVREY------------------ 178
                        +    +    E  I A  +K K   + +                   
Sbjct: 183 AFFMEDRLAIETISLNANEVSADEEAIKAYWEKNKANYLTQKSYTLELLNLPPSKTPFDD 242

Query: 179 -----LIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGK 233
                       +      +   F + + K A + RL+  K        A K  +++  +
Sbjct: 243 KTLEAFYAEEKHNYQHADGKLMLFEEAKEKLAIDLRLKNDKKSALESFLAFKKGEINATE 302

Query: 234 AQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKR--DLGGEIALKAYLSAQ 291
            + + ++D       +   +++    P +       I + + +  +       K   S  
Sbjct: 303 TKVVYDTDSLFPMDKIQIAAKDEVLKPVIINNQYVVIRVKEIKFPEPMSYEMAKKEASND 362

Query: 292 NTPTKIEKHEAEYVKKLRSNAIIHYY 317
              T  E+   +     +++A +  +
Sbjct: 363 LLKTLKEEALEK-----KAHAKVEQF 383


>gi|149194584|ref|ZP_01871680.1| hypothetical protein CMTB2_01034 [Caminibacter mediatlanticus TB-2]
 gi|149135328|gb|EDM23808.1| hypothetical protein CMTB2_01034 [Caminibacter mediatlanticus TB-2]
          Length = 482

 Score = 36.2 bits (81), Expect = 6.0,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 67/221 (30%), Gaps = 17/221 (7%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   + T     +  +    +  +           +   +     +    IT  D     
Sbjct: 1   MIEWMQTHRKWLVITIWIATIAFVGAGFVGWGQFQFGKKTSTIAKVKDTEITIQDWQNAY 60

Query: 61  ALLKLQKING-------------ELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
             L  +                  L+K A+   I + + +Q  +  G+    N +    +
Sbjct: 61  NNLFDRVNQQLGGKLDEATAKKLGLQKEALDIAIQQGILRQYAKDLGLYVTDNDIAKKIL 120

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
           +  +N     +++ ++L   G     F+  L  Q +   ++K   +       M I +  
Sbjct: 121 EVFKN----KQNYENYLKNTGQKAKDFENNLRKQLLVEKLLKYLNLKPQKTEIMTIASAL 176

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEES 208
               N+ ++      +   + +N+++      K    ++  
Sbjct: 177 YNADNLDIKVINKNNIKVDVDENEIKKYWEKNKNKYLSQNQ 217


>gi|294786339|ref|ZP_06751593.1| peptidylprolyl isomerase PrsA1 [Parascardovia denticolens F0305]
 gi|315225880|ref|ZP_07867668.1| peptidyl-prolyl cis-trans isomerase [Parascardovia denticolens DSM
           10105]
 gi|294485172|gb|EFG32806.1| peptidylprolyl isomerase PrsA1 [Parascardovia denticolens F0305]
 gi|315120012|gb|EFT83144.1| peptidyl-prolyl cis-trans isomerase [Parascardovia denticolens DSM
           10105]
          Length = 300

 Score = 36.2 bits (81), Expect = 6.0,   Method: Composition-based stats.
 Identities = 33/310 (10%), Positives = 82/310 (26%), Gaps = 38/310 (12%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           ++ + T    I+  +           SS    T  G  ++     + +            
Sbjct: 1   MRKMKTPLTPILATLAAATLLLGGCGSSPSVATYQGGDVSQEAFYQELKSSPSS------ 54

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
            K  +  L++           G +     V+  +  +    G   +    +L +     +
Sbjct: 55  -KTILANLLIYRALDHA---YGSSVSQAQVDKAYKGYQDQYGSGFDS---YLSQNNYTKD 107

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKL 192
            FK+ L    +    +K     K    ++               +  ++ +L S      
Sbjct: 108 SFKRSLRTNLLSEVALKKL--KKVSPAQLADAWKDFH------PQVTVQHILVSD----- 154

Query: 193 QNQGFVQKRIKDAEESRLRLPKDCNKLEKFA-SKIHDVSIGKAQYLLESD-LHPQFQNLL 250
                 Q   +   +   +        + ++         GK  +   +      F++  
Sbjct: 155 ------QATAQQVIDQLGQGKDFSELAKTYSLDTSSKDEGGKVTFTSSNRAYDSTFKDAA 208

Query: 251 KKSQNN--TTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPT--KIEKHEAEYVK 306
                   TT+P     G E I +      G   + K  L+        +      + + 
Sbjct: 209 YALTQGKYTTSPVKVVDGYEVIKMVSNPSKGTFASRKKELTEAVYAKWLRDSTVMKQVIS 268

Query: 307 KLRSNAIIHY 316
           ++  N  +  
Sbjct: 269 QVLKNEKVQI 278


>gi|297584461|ref|YP_003700241.1| hypothetical protein Bsel_2171 [Bacillus selenitireducens MLS10]
 gi|297142918|gb|ADH99675.1| hypothetical protein Bsel_2171 [Bacillus selenitireducens MLS10]
          Length = 250

 Score = 36.2 bits (81), Expect = 6.0,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 50/162 (30%), Gaps = 17/162 (10%)

Query: 31  VSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKING--------------ELEKIA 76
            S     +   +  T+NGE I   ++  ++   ++                   ++++  
Sbjct: 58  PSESVLNLEGDVVATVNGEDIPMANLEMQLQQYEMMFAQQGIDFEDEENMALLMQIQEGI 117

Query: 77  VQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQ 136
           V ELI   L  QE +   I  D + V     Q         +DF   L  QG  ++  + 
Sbjct: 118 VDELIQLELLVQEADSQNIQADEDEVQAEMEQIRSQF---DDDFEEVLASQGYTEDLLEN 174

Query: 137 YLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREY 178
            +        ++  +++        +    +   +       
Sbjct: 175 EIRDSLKLNQLLSPEYIETLDFEVTDEELEEAYEQQAAQNPE 216


>gi|88801377|ref|ZP_01116905.1| thiol:disulfide interchange protein DsbD precursor [Polaribacter
           irgensii 23-P]
 gi|88782035|gb|EAR13212.1| thiol:disulfide interchange protein DsbD precursor [Polaribacter
           irgensii 23-P]
          Length = 657

 Score = 36.2 bits (81), Expect = 6.0,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 44/162 (27%), Gaps = 6/162 (3%)

Query: 21  VLIIFCIVPIVSYKSWAMSSRIRTT--INGEVITDGDISKRIALLKL----QKINGELEK 74
           +   F +  + S  S    + I     IN    T+ D+     LL+      + N E   
Sbjct: 4   IFSFFLLFTVFSIFSQTEENPIVWKSSINQISETEYDVILTAKLLQAWHLYSQYNPEGAS 63

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
            A++ +I E      +    I  D+                     +  +  +       
Sbjct: 64  QALEIVIPEGKTGYALVGKAIESDTQKEYSEIWGKEEVYFADRAIITQKIKIRDKTIPSI 123

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
              +  Q      ++ +    +     +I      + + +  
Sbjct: 124 TVSIYGQVCKQACIQIEESFSFPLDGKKIKKEIIVLNDKSKT 165


>gi|145516298|ref|XP_001444043.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124411443|emb|CAK76646.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1645

 Score = 36.2 bits (81), Expect = 6.1,   Method: Composition-based stats.
 Identities = 32/325 (9%), Positives = 88/325 (27%), Gaps = 27/325 (8%)

Query: 8    SLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQK 67
             + + I      F L++  ++P++   ++ +   I  ++N   I +  I  +   LK   
Sbjct: 1326 RIDNHISYFYHIFALVLISLIPVIYALAYQLYYNII-SVNVTPINNQAIQAQEMRLKFIT 1384

Query: 68   INGELEKIAVQELI----------------------VETLKKQEIEKSGITFDSNTVNYF 105
                 ++  ++                            + +Q      I  +       
Sbjct: 1385 TINRYDQFLIKSYFESYCKLSQSNASYKCSFNNIYSDNQILQQIEMNETIIQEELNTLQQ 1444

Query: 106  FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
                         +  +  +KQ I                   +  F     +   +   
Sbjct: 1445 LDFSNFFFNTINSNQFNSEEKQSILSKDTCLLTNCDMKKDIFQERLFQETLNSYFFQGII 1504

Query: 166  NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
               ++ +    ++ +     + P+ KL     + +           L     ++ +F+  
Sbjct: 1505 KLHQIVSSLYLQFNLIYQNLNTPEEKLNAIQDIMEENDYLIYILWGLDAIQYQISEFSQY 1564

Query: 226  IHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALK 285
              + S+        + L    Q+   +              + +I I  K+ +  +   K
Sbjct: 1565 FVNTSLTTLNDFTANMLVNVIQSCDTQGMLLMVGVIQ----ILFIQILMKKQIIAKQLFK 1620

Query: 286  AYLSAQNTPTKIEKHEAEYVKKLRS 310
                       I++    Y +KL+ 
Sbjct: 1621 IVPLQIIFQKNIQRQLTVYQRKLQK 1645


>gi|317128538|ref|YP_004094820.1| hypothetical protein Bcell_1827 [Bacillus cellulosilyticus DSM
           2522]
 gi|315473486|gb|ADU30089.1| hypothetical protein Bcell_1827 [Bacillus cellulosilyticus DSM
           2522]
          Length = 179

 Score = 36.2 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 47/153 (30%), Gaps = 7/153 (4%)

Query: 4   KVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALL 63
           K F   +    +     +++I         +       +  T+NGE I   D+ K    +
Sbjct: 3   KYFKFNNSIFIISIAVLLILILAPFNKGKMEEQVEIDAVVATVNGENIIYKDVIKVKNSM 62

Query: 64  KL-------QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
           +L            +L + A+++ I+  L  QE ++  I      V              
Sbjct: 63  RLKKYNDLTNNNEDKLTEAAIEQRIIHRLLIQEAQRLNIEVSDEEVAIQLQLIKEVLPSD 122

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVK 149
                S + +    D    +      I   +++
Sbjct: 123 LTLEESLILQNYTEDALLAEIKEQLMIERLLLE 155


>gi|284161890|ref|YP_003400513.1| nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase
           [Archaeoglobus profundus DSM 5631]
 gi|284011887|gb|ADB57840.1| Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase
           [Archaeoglobus profundus DSM 5631]
          Length = 231

 Score = 36.2 bits (81), Expect = 6.3,   Method: Composition-based stats.
 Identities = 12/105 (11%), Positives = 25/105 (23%), Gaps = 18/105 (17%)

Query: 222 FASKIHDVSIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE 281
           + + +            ++ L P               P  T  G+  I IC        
Sbjct: 75  YNTALVIHRGKILGRHRKTKLFPLLNEHKIFKAGKVVKPIETPFGLFGIMIC-------Y 127

Query: 282 IALKAYLSAQNTPTKIE----------KHEAEYVKKLRSNAIIHY 316
                 ++ +      +          +    +   LR+ A I  
Sbjct: 128 ELRFPEIARKLVNKGAKILFVIAQFPSERIEHWKVLLRARA-IEN 171


>gi|313633259|gb|EFS00126.1| foldase protein PrsA 1 [Listeria seeligeri FSL N1-067]
          Length = 102

 Score = 36.2 bits (81), Expect = 6.3,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 1/65 (1%)

Query: 253 SQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSA-QNTPTKIEKHEAEYVKKLRSN 311
             ++ +    T  G   I +  K D       KA +           ++    +KK    
Sbjct: 14  KTDDVSGIVKTSYGYHLIQLVKKTDKTTYAKDKAKVKEAYIQSQLTSENMTAALKKELKA 73

Query: 312 AIIHY 316
           A I  
Sbjct: 74  ANIDI 78


>gi|313213107|emb|CBY36969.1| unnamed protein product [Oikopleura dioica]
 gi|313241588|emb|CBY33830.1| unnamed protein product [Oikopleura dioica]
 gi|313242426|emb|CBY34573.1| unnamed protein product [Oikopleura dioica]
          Length = 412

 Score = 36.2 bits (81), Expect = 6.3,   Method: Composition-based stats.
 Identities = 19/209 (9%), Positives = 58/209 (27%), Gaps = 1/209 (0%)

Query: 46  INGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
           + G  +   D+  R      Q+   +  +  + E+  +    +++ K       +     
Sbjct: 134 VGGPEVIQLDVESRKKSASKQRSTKKATRSNLGEMYDDRQFLEKLAKDSALMKDHNGKNS 193

Query: 106 FVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPA 165
             +  ++     +D + F  +Q       ++   ++ +  + +K D       L+ +   
Sbjct: 194 VGELIKHGIRYLDDRADFWTQQKPEYTRSRERTMLKPLPVESIKADLSAAIKLLDDKEFE 253

Query: 166 NKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASK 225
              K              +   P      Q  +      A  +  +  +   + +K  + 
Sbjct: 254 ESLKAVIDINTNVETHPDVNKGPMMC-ALQADINSVYGQALLALGKNEESITRHKKELAA 312

Query: 226 IHDVSIGKAQYLLESDLHPQFQNLLKKSQ 254
                I   +     +L   +        
Sbjct: 313 AKKSGITDLKVRAMDNLAEAYVKNQNYKH 341


>gi|154148500|ref|YP_001406386.1| putative peptidyl-prolyl cis-trans isomerase D-like protein
           [Campylobacter hominis ATCC BAA-381]
 gi|153804509|gb|ABS51516.1| putative peptidyl-prolyl cis-trans isomerase D-like protein
           [Campylobacter hominis ATCC BAA-381]
          Length = 487

 Score = 36.2 bits (81), Expect = 6.3,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 52/232 (22%), Gaps = 15/232 (6%)

Query: 2   TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI- 60
             K   SL   + + T  FV   F             +S     +    I+  +   +  
Sbjct: 5   MQKHKKSLIPTVWISTIAFVGAGFVGWGAYDLNKSRSTS--VAKVGDTAISIKEFQNKYS 62

Query: 61  ------------ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ 108
                            Q     L+++A+  LI + +     +  GI      V    + 
Sbjct: 63  EVYNYLKSISDGKFTDEQAKKMHLDEMAINALIQDAILLNFAKDLGINASDEEVAREIIN 122

Query: 109 HARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQ 168
                         + +          +Y         + K    +       +I     
Sbjct: 123 SDNFKTDGKFSKKLYENAMKNAGLSQNEYEKELKKVIILDKLKKAISIKPNADDIEMLTA 182

Query: 169 KMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLE 220
                   E  I     S             ++ K    ++     D   +E
Sbjct: 183 SEFMQDKVEIAIVDQNVSTITFNDDELKDFWEKNKSKYLTQKTYEMDAYFVE 234


>gi|125973773|ref|YP_001037683.1| copper amine oxidase-like protein [Clostridium thermocellum ATCC
           27405]
 gi|256004504|ref|ZP_05429483.1| copper amine oxidase domain protein [Clostridium thermocellum DSM
           2360]
 gi|281417930|ref|ZP_06248950.1| copper amine oxidase domain protein [Clostridium thermocellum JW20]
 gi|125713998|gb|ABN52490.1| copper amine oxidase-like protein [Clostridium thermocellum ATCC
           27405]
 gi|255991509|gb|EEU01612.1| copper amine oxidase domain protein [Clostridium thermocellum DSM
           2360]
 gi|281409332|gb|EFB39590.1| copper amine oxidase domain protein [Clostridium thermocellum JW20]
 gi|316940034|gb|ADU74068.1| copper amine oxidase-like domain-containing protein [Clostridium
           thermocellum DSM 1313]
          Length = 259

 Score = 36.2 bits (81), Expect = 6.3,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 67/233 (28%), Gaps = 15/233 (6%)

Query: 6   FTSLSDFIKLLTTYFVLIIFCIVPIVSYK---SWAMSSRIRTTINGEVITDGDISKRIAL 62
              +  F   L  + +LIIF      S+    S+A +  I+  +NG  I   D++  I  
Sbjct: 1   MKKIRVFFSYLVVFCILIIFSFTGSFSFAVQNSYASADEIKVFLNGVEI-KFDVAPYIKN 59

Query: 63  LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSS 122
            +       + +    ++    + +  +  +  T     +   F            +   
Sbjct: 60  GRTMVPFRAIFEALGVDISWNGVNRTILATNDTTEIYIEIGKAFAYVNGYKVNLDAEAEI 119

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
              +  +      +       W    +  ++     +             +  + Y    
Sbjct: 120 VGGRTFVPLRFVSENAGADVSWDGARRTVYISYVNQVRD-----------LGEKSYFRDL 168

Query: 183 VLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
                      +   ++   K   E+++ + +  +   K+ S I +++     
Sbjct: 169 EFTVDGWESEADGKILKVYGKVNLENKMLMIELYDSSRKYVSGIAEITGKDGG 221


>gi|212213414|ref|YP_002304350.1| hypothetical protein CbuG_1962 [Coxiella burnetii CbuG_Q212]
 gi|212011824|gb|ACJ19205.1| hypothetical protein CbuG_1962 [Coxiella burnetii CbuG_Q212]
          Length = 436

 Score = 36.2 bits (81), Expect = 6.4,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 64/239 (26%), Gaps = 11/239 (4%)

Query: 10  SDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRI--RTTINGEVITDGDI---SKRIALLK 64
           S F K +  + + ++   +       +   S++     I     T   I    ++   L 
Sbjct: 199 SFFSKKIAVFLISLLMIFIGAGVGFWFNPFSKLGRLAEI-TSPFTLDHICAYQQKYLTLV 257

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
            Q    ++E+  +     E +      K     +  +     V          E    + 
Sbjct: 258 KQYKIAKIERQLLD----EKVAIAAARKRLADLNIPSSQNKRVIKNITPLNRDEQAEPYT 313

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
             + +         +I+       ++       N   +         N      L+    
Sbjct: 314 LDEILLLELPPTNYSIRIKDSYDKQSLITFAKNNALAKDAIYYSYFHNRKKWYVLLYNYY 373

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRL-RLPKDCNKLEKFASKIHDVSIGKAQYLLESDL 242
            S  D        ++K   +  E     L +   K  K       +  G+  +  ++++
Sbjct: 374 HSKMDAHDAALKLLKKIKTEHIEIINLSLIQSKIKSRKNRVNSSFLKGGELGFSPQAEM 432


>gi|57167705|ref|ZP_00366845.1| conserved hypothetical secreted protein, putative [Campylobacter
           coli RM2228]
 gi|57020827|gb|EAL57491.1| conserved hypothetical secreted protein, putative [Campylobacter
           coli RM2228]
          Length = 495

 Score = 36.2 bits (81), Expect = 6.5,   Method: Composition-based stats.
 Identities = 19/260 (7%), Positives = 64/260 (24%), Gaps = 14/260 (5%)

Query: 60  IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAED 119
             LL    I  +  +  +   I+    +Q         +   +   +           E 
Sbjct: 139 YELLNANNITPKEYEKTLSNEIIIGKLEQIFNLPQTDEELKMLGASYFMQDSLNIAKLEQ 198

Query: 120 FSSFLDKQGIGDNHFKQYLAIQSIWPDV--VKNDFMLKYGNLEMEIPANKQKMKNITVRE 177
               +                      V  +   ++        +    +         +
Sbjct: 199 DKENIKVNEEELKKLWNEHKEDYKTKKVYEISTYYLPVDMQKIDDSKLEEFYNNENNKFK 258

Query: 178 YLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
           Y   +      +   ++        +    +  +  +     +KF    +         +
Sbjct: 259 YKDFSGKIMSFEAAKKDVAKDYALAQLKNTANAKFLELKEGKDKFQKDEN---------I 309

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
            +SD++   + L +    +   P   Q G   I +     +  +         +  P  I
Sbjct: 310 TDSDVYYPLEALSRAKNGDVLRPSEYQNGYIIIKLNKTNPVRTKT--FDEAREELMPIYI 367

Query: 298 EKHEAEYVKKLRSNAIIHYY 317
            +   + +++ ++   +  +
Sbjct: 368 SEQAKKNLEE-KAKQNLENF 386


>gi|300866602|ref|ZP_07111290.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300335374|emb|CBN56450.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 250

 Score = 36.2 bits (81), Expect = 6.5,   Method: Composition-based stats.
 Identities = 18/230 (7%), Positives = 56/230 (24%), Gaps = 1/230 (0%)

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
               +L+        +++  +              A  T    E  ++            
Sbjct: 6   QIGDKLLQAQDIPSLLKRYQLMPQFLRGTIEDQAIASYTCTEEERSAALEQFHAQHQLTS 65

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
            +  A      D+ + + +       +     ++   +     +L R          L  
Sbjct: 66  SEAKAAWLQSQDLTEEELVQMAIRPVLIEKFKQETWSSKVDNYFLGRKTHLDRVVYSLIR 125

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF-QNLLKKS 253
                   +                  ++      + G+   +  S  HP   + L    
Sbjct: 126 TKNPGLAHELYFRIAEGEQTFEEVARDYSEGPEAQTGGRLGPVSLSQPHPAISKLLSVSQ 185

Query: 254 QNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAE 303
                 P    + +  I +        + +++ +L  +   T + +  ++
Sbjct: 186 SGQLWAPRALAEWMVIIRLDKFMPAQLDDSMRRHLINELFETWVSEQLSQ 235


>gi|156379317|ref|XP_001631404.1| predicted protein [Nematostella vectensis]
 gi|156218444|gb|EDO39341.1| predicted protein [Nematostella vectensis]
          Length = 1026

 Score = 36.2 bits (81), Expect = 6.6,   Method: Composition-based stats.
 Identities = 30/267 (11%), Positives = 71/267 (26%), Gaps = 19/267 (7%)

Query: 60  IALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFF------VQHARNT 113
           + L K   ++  L++  + +   +    QE  +                     Q     
Sbjct: 3   LQLTKDNNLDAVLQQQIMDQFRKDNELLQEQLEQRKNKSLMDTKAKLAARLARRQEEARR 62

Query: 114 GLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
               +     L++Q +     K   A   + P+V+      +   L+ E     Q+MK  
Sbjct: 63  KTEEDSAKRILEEQSLALAANKPKDADHVVVPEVIIPRETPEEQALKKEQERVIQEMKVR 122

Query: 174 TVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGK 233
              E               +      K        R    +   +L    + +    + +
Sbjct: 123 HAEEAQRLKEKLERELKTDEEAAMQMKTADQERSLRELKDRHAAELSARGNNMSPEELQQ 182

Query: 234 AQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNT 293
                + ++    + L        ++            + +KR    E   +        
Sbjct: 183 LLAQHQQEVDDAMEKLDADRSRQQSSLQQ--------KLAEKRRKKLEAQKRKQEREMTR 234

Query: 294 P-----TKIEKHEAEYVKKLRSNAIIH 315
                  +++    E+VK+    A+I 
Sbjct: 235 EVMEQKKELQDIRTEHVKEAEKQAMIE 261


>gi|330814031|ref|YP_004358270.1| hypothetical SurA-like protein [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487126|gb|AEA81531.1| hypothetical SurA-like protein [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 462

 Score = 36.2 bits (81), Expect = 7.0,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 69/222 (31%), Gaps = 12/222 (5%)

Query: 16  LTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKI------- 68
           +    ++ +F    +    S   ++ +   ++G+ I   D    +      K        
Sbjct: 1   MLIVIIIAVFASWGVGDMFSAGKTN-VVAEVSGKNIYSEDYVNELRNGLQTKNYQNVSDA 59

Query: 69  -NGELEKIAVQELIVETLKKQEIEKSGITFDSN---TVNYFFVQHARNTGLSAEDFSSFL 124
               L    + +L+ E + +   E+  I  +            + ++N   S  ++  +L
Sbjct: 60  IKDNLHIQILNQLVAEKIFEIYAEEEKIIINDKTLSNFIKDIPEFSKNEKFSRTEYEKYL 119

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
            K  I    F+       +   +V++  +                 K I++    +  + 
Sbjct: 120 LKNQISSFSFETSFKKNLLKKLIVESQNLDSISTSYHTTRVKDYFEKKISISYINLEDLY 179

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKI 226
             +   + +   + +K+   + E R       N+ ++     
Sbjct: 180 EDVDITEKEILDYHKKKPSYSNELRSIKYAVINQNKEANQSS 221


>gi|297545628|ref|YP_003677930.1| hypothetical protein Tmath_2254 [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296843403|gb|ADH61919.1| conserved hypothetical protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 238

 Score = 36.2 bits (81), Expect = 7.0,   Method: Composition-based stats.
 Identities = 16/150 (10%), Positives = 41/150 (27%), Gaps = 9/150 (6%)

Query: 43  RTTINGEVITDGDISKRIAL-LKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNT 101
              +NG  I   +   R  L L        ++   +Q+LI E +++    K  I      
Sbjct: 67  IAEVNGIPIYKNEFELRKELTLAPGVQTDNIDDYILQKLIKEKVQEYLASKYNIRVSERG 126

Query: 102 VNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYL--------AIQSIWPDVVKNDFM 153
           +N +  +  +      E      +          +Y             ++  +      
Sbjct: 127 INEYIEKEKKEFNEYPEAKKKLDELIAASGMTEDEYWNTYEKYNAKRILLFSKLNNYIIE 186

Query: 154 LKYGNLEMEIPANKQKMKNITVREYLIRTV 183
               + +++             + Y+   +
Sbjct: 187 EGIKSGKLKKAEEMTNDVQNEYKRYVDSII 216


>gi|182438226|ref|YP_001825945.1| putative lipoprotein [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178466742|dbj|BAG21262.1| putative lipoprotein [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 218

 Score = 36.2 bits (81), Expect = 7.0,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 41/133 (30%), Gaps = 11/133 (8%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK-----------LQKINGELEKIAV 77
           P++S             + GE I    +  R A ++           L   +G+L +  +
Sbjct: 20  PLLSACGNQSHPGAAAVVGGERIEVSTVQDRAADVRSAQENSPEAAQLVNKSGQLNRAKL 79

Query: 78  QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY 137
             LI   +  +    +G+T     +           G      +  L ++ +  +     
Sbjct: 80  HGLIFGRILDRAAADAGVTVTRKEIQEMRKASGAQQGGEERFEAMMLQQRWVAPDQIDAD 139

Query: 138 LAIQSIWPDVVKN 150
           +  +   P + + 
Sbjct: 140 MRQEVQLPKLAEA 152


>gi|171779578|ref|ZP_02920534.1| hypothetical protein STRINF_01415 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281680|gb|EDT47114.1| hypothetical protein STRINF_01415 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 352

 Score = 36.2 bits (81), Expect = 7.0,   Method: Composition-based stats.
 Identities = 32/330 (9%), Positives = 74/330 (22%), Gaps = 45/330 (13%)

Query: 1   MTSKVFTSLSDFI--KLLTTYFVLIIFCIVPIVS---YKSWAMSSRIRTTINGEVITDGD 55
           M +K  +  S  I  K      + +   ++         +    ++   T+ G  IT  D
Sbjct: 1   MANKEKSGFSKMIQSKAFKGVSIAVASALIGAGVTYLATNNNSETKALVTMKGNTITVSD 60

Query: 56  ISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGL 115
                      +            ++   L +   ++ G       V   +   A + G 
Sbjct: 61  FYNAAKSTSSSQQT----------MLNLVLSRVFEDQYGDKVSDKDVTKAYNTTASSYGS 110

Query: 116 SAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITV 175
           S               + +KQ +    +    VK     K      +             
Sbjct: 111 SFPSALQAAGL---TTDTYKQQIRTSMLVEYAVKEAAKDKLTTKNYKDAYKDYNADTTAT 167

Query: 176 REYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQ 235
              L      +   N+    G    +I     +  +     +  +               
Sbjct: 168 VIALTDEDKANSVHNQATADGADFDKIAKENTTAKKTEYTFDSADT-------------- 213

Query: 236 YLLESDLHPQFQNLLKKSQNNTTNPYVT------QKGVEYIAICDKRDLGGE-IALKAYL 288
            L    +   F+      + + ++                +    K +   +    K  L
Sbjct: 214 KLPSDVMAAAFKQ----DEGSVSDVIKVMNSSTYSYTYYIVKTTKKTEKNADWKTYKKRL 269

Query: 289 SAQNTPTKIEKHE--AEYVKKLRSNAIIHY 316
                           + + K    A +  
Sbjct: 270 KKIIMAKYQNDTSFQNQVISKALDKANVKI 299


>gi|84497837|ref|ZP_00996634.1| hypothetical protein JNB_17158 [Janibacter sp. HTCC2649]
 gi|84381337|gb|EAP97220.1| hypothetical protein JNB_17158 [Janibacter sp. HTCC2649]
          Length = 168

 Score = 36.2 bits (81), Expect = 7.2,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 42/137 (30%), Gaps = 2/137 (1%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K +    + +    V  +S  S   S++    ++G VIT+  + +    +       + 
Sbjct: 1   MKAVKARTIALALAGVLALSACSGTSSAQTAAVVDGRVITEQQVREATEQINAAFKPEQP 60

Query: 73  --EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIG 130
                A+  LI      +    +G     +     F  +      +  +           
Sbjct: 61  LTAAQALTLLIRAPYINKAAADAGKAQSESAARAAFKDYPETPSDTTVEILQAEASLQQI 120

Query: 131 DNHFKQYLAIQSIWPDV 147
           D+  +Q L  +     +
Sbjct: 121 DDAGRQKLTKEFAALQM 137


>gi|306841864|ref|ZP_07474544.1| rotamase family protein [Brucella sp. BO2]
 gi|306287994|gb|EFM59396.1| rotamase family protein [Brucella sp. BO2]
          Length = 628

 Score = 36.2 bits (81), Expect = 7.4,   Method: Composition-based stats.
 Identities = 25/263 (9%), Positives = 63/263 (23%), Gaps = 12/263 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD----I 56
           M   + ++   +I  L    +++ F I  I       M+     T     ++  D     
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            +++  L  Q       + A    +   +  Q      +   +  +     Q A     +
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            +                           D ++N   +      +E   +  K+ +  ++
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
              +        D               +E+            E            K  Y
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAY------FEVHKEDYKAPEYRKISY 234

Query: 237 LLESDLHPQFQNLLKKSQNNTTN 259
           +          +    +Q+  + 
Sbjct: 235 VKLE--PSDIADPAAVTQDEISE 255


>gi|254719202|ref|ZP_05181013.1| rotamase family protein [Brucella sp. 83/13]
 gi|265984198|ref|ZP_06096933.1| rotamase [Brucella sp. 83/13]
 gi|306837950|ref|ZP_07470808.1| rotamase family protein [Brucella sp. NF 2653]
 gi|264662790|gb|EEZ33051.1| rotamase [Brucella sp. 83/13]
 gi|306406874|gb|EFM63095.1| rotamase family protein [Brucella sp. NF 2653]
          Length = 628

 Score = 36.2 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 25/263 (9%), Positives = 63/263 (23%), Gaps = 12/263 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD----I 56
           M   + ++   +I  L    +++ F I  I       M+     T     ++  D     
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            +++  L  Q       + A    +   +  Q      +   +  +     Q A     +
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAISVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            +                           D ++N   +      +E   +  K+ +  ++
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
              +        D               +E+            E            K  Y
Sbjct: 181 ALALYQGESRSADYIDVPAEKADTIPAPSEDVLKAY------FEAHKEDYKAPEYRKISY 234

Query: 237 LLESDLHPQFQNLLKKSQNNTTN 259
           +          +    +Q+  + 
Sbjct: 235 VKLE--PSDIADPAAVTQDEISE 255


>gi|15611978|ref|NP_223629.1| hypothetical protein jhp0911 [Helicobacter pylori J99]
 gi|4155485|gb|AAD06486.1| putative [Helicobacter pylori J99]
          Length = 487

 Score = 36.2 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 51/178 (28%), Gaps = 17/178 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +    +  I   +      S+++ S     +    I+  ++++  
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEY 60

Query: 61  ALLK---------------LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYF 105
             LK                Q     LEK A+  LI + L +      G+      V   
Sbjct: 61  RRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNFALDLGLGATKQEVAKE 120

Query: 106 FVQH--ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEM 161
             +    +  G+  E+    + KQ        +    + +    +   F      LE 
Sbjct: 121 IRKTNVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTPLEQ 178


>gi|227878609|ref|ZP_03996531.1| membrane nuclease [Lactobacillus crispatus JV-V01]
 gi|256850428|ref|ZP_05555856.1| DNA-entry nuclease [Lactobacillus crispatus MV-1A-US]
 gi|262046422|ref|ZP_06019384.1| DNA-entry nuclease [Lactobacillus crispatus MV-3A-US]
 gi|293380620|ref|ZP_06626673.1| DNA/RNA non-specific endonuclease [Lactobacillus crispatus 214-1]
 gi|227861786|gb|EEJ69383.1| membrane nuclease [Lactobacillus crispatus JV-V01]
 gi|256712825|gb|EEU27818.1| DNA-entry nuclease [Lactobacillus crispatus MV-1A-US]
 gi|260573293|gb|EEX29851.1| DNA-entry nuclease [Lactobacillus crispatus MV-3A-US]
 gi|290922807|gb|EFD99756.1| DNA/RNA non-specific endonuclease [Lactobacillus crispatus 214-1]
          Length = 283

 Score = 35.8 bits (80), Expect = 7.7,   Method: Composition-based stats.
 Identities = 18/195 (9%), Positives = 51/195 (26%), Gaps = 14/195 (7%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD--ISKRIALLKLQKINGE 71
           K + T     +F      +  + ++S  +   +  + I   D    K+   +  +    E
Sbjct: 4   KKIITLVSSTLFLFGGYGAITNPSLSQNVIAKV--KTIIKYDHSAEKKTKQIAQENKQTE 61

Query: 72  LEKIAVQELIVETLKKQEIEKSGITF---------DSNTVNYFFVQHARNTGLSAEDFSS 122
            + +++ + I +  K+ +                   N      +    N    ++   S
Sbjct: 62  KKIVSLDKKIAKLRKELKKYTGKHNIESVSAAKLASLNYSGKNIITVNNNDPSFSKSDLS 121

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
                     +      + +    ++++  M       + +       K +       R 
Sbjct: 122 TNRGAWQEYGNLDGLNRVTAANALLIQS-LMPSARREPLHVDPTGWHNKRVAGGWLYNRC 180

Query: 183 VLFSIPDNKLQNQGF 197
            L         N   
Sbjct: 181 HLIGYQLTGQNNNIK 195


>gi|218675330|ref|ZP_03524999.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Rhizobium etli GR56]
          Length = 579

 Score = 35.8 bits (80), Expect = 7.7,   Method: Composition-based stats.
 Identities = 19/233 (8%), Positives = 55/233 (23%), Gaps = 14/233 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDI---- 56
           M   +  +   ++  L    ++  F +  +        +S    T+  + +   +     
Sbjct: 17  MFHFLRRAAQTWVAKLLLLLLVASFGVWGVSRELISGGNSTTVVTVGDQRVGVNEFHLAY 76

Query: 57  ---------SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFV 107
                       + L   Q     +E+  + +LI      Q      +    + +     
Sbjct: 77  QRQVASLGQQFGMRLTPEQARAFGVEQQVLSQLIAGASLDQLAADMNLGLSEDRLAQLIG 136

Query: 108 QHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYG-NLEMEIPAN 166
                  ++ +        +    N  +     +     V               +   +
Sbjct: 137 DDPAFKAVNGQFDRELFVSRLRNANIHQDDYIKERSKVAVRSQIVDAVSNGFTAPKTLVD 196

Query: 167 KQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKL 219
             K+     R      +  +  +        V     +  + R R P+     
Sbjct: 197 AMKLYGDESRAVDYLLLTNANIEPIKAPADDVLATWFEGVKQRYRAPEYRKIA 249


>gi|229829771|ref|ZP_04455840.1| hypothetical protein GCWU000342_01868 [Shuttleworthia satelles DSM
           14600]
 gi|229791760|gb|EEP27874.1| hypothetical protein GCWU000342_01868 [Shuttleworthia satelles DSM
           14600]
          Length = 354

 Score = 35.8 bits (80), Expect = 7.7,   Method: Composition-based stats.
 Identities = 17/242 (7%), Positives = 52/242 (21%), Gaps = 11/242 (4%)

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
             ++++     L  + + +Q      I+              +    ++E+    L  + 
Sbjct: 80  EQQVKETVADSLKQQYVARQHAADFNISISEEESKKIGEAADKFLAANSEEAVRQLGAER 139

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                F +           ++        + E          +              S  
Sbjct: 140 DYVVRFFEDQYYYYHVEQALEGQADTTVSDEEA--------NQKKFSYVKFAFQSTDSST 191

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIG--KAQYLLESDLHPQF 246
               Q     +  +    ++           ++    +   + G                
Sbjct: 192 GKTSQVTEEQKAELMKQAKTLSTSADFDTTAKQMKQTVQTANYGKSDVGDKSYKLPQAVL 251

Query: 247 QNLLKKSQNNTTNPYVTQK-GVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYV 305
             L        ++       G   + +    D     A K  L  +      E+   ++ 
Sbjct: 252 TALEGMEVGKVSDVVTVDNDGYYVLRLDSLSDADATAAKKKTLENKKKTEHAEEVFKQWE 311

Query: 306 KK 307
            +
Sbjct: 312 NE 313


>gi|123477078|ref|XP_001321708.1| WW domain containing protein [Trichomonas vaginalis G3]
 gi|121904540|gb|EAY09485.1| WW domain containing protein [Trichomonas vaginalis G3]
          Length = 150

 Score = 35.8 bits (80), Expect = 7.8,   Method: Composition-based stats.
 Identities = 7/127 (5%), Positives = 30/127 (23%), Gaps = 3/127 (2%)

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
              N    +   +        +  +       +    ++       +++  +++  +   
Sbjct: 20  YYYNKVTNETTWIRPIPYPGNKPNRANEWPPIIYVAQIYIKHGPMDESKEKIKRIFRQIV 79

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESD---LHPQFQNLLKKSQNNTTNPYVT 263
                  +   +  +    I     G   ++  +D        +          +    T
Sbjct: 80  FENKSFEEMVQQESEQCPDIQTDPNGDVGWIESTDPRFTKEYIKAAWDLRIGEMSTYINT 139

Query: 264 QKGVEYI 270
           + G   I
Sbjct: 140 EHGYFII 146


>gi|332027517|gb|EGI67594.1| Protein lava lamp [Acromyrmex echinatior]
          Length = 3567

 Score = 35.8 bits (80), Expect = 8.0,   Method: Composition-based stats.
 Identities = 22/191 (11%), Positives = 52/191 (27%), Gaps = 2/191 (1%)

Query: 33   YKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIEK 92
                    +I  T N + IT  ++  R+A L+ +    + EK    + I E       + 
Sbjct: 1533 LAQSEKMKKIVATFNKKKITCQELEARVAELEEKWTTEKDEKEVKNKQIQEVEISMREKD 1592

Query: 93   SGITFDSNTVNYFFVQHARN--TGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKN 150
            + I      +       A         E  S+ L ++          +  +         
Sbjct: 1593 NKIHDLEEKLLQAKNDTAEILANSEKFEKESTSLKEKIGILMEHVAEMDEEIEKQRTEIE 1652

Query: 151  DFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRL 210
               L+    +       ++ +               + D   +    +  R++  E   +
Sbjct: 1653 RISLEVIIEKTAKEDIIKEYEIYKQTASKEDEQKQIVLDEVKEQARELSVRMQVMENEYV 1712

Query: 211  RLPKDCNKLEK 221
            +       L+ 
Sbjct: 1713 QQLATIKNLKA 1723


>gi|306826547|ref|ZP_07459856.1| peptidyl-prolyl cis-trans isomerase [Streptococcus pyogenes ATCC
           10782]
 gi|304431274|gb|EFM34274.1| peptidyl-prolyl cis-trans isomerase [Streptococcus pyogenes ATCC
           10782]
          Length = 316

 Score = 35.8 bits (80), Expect = 8.0,   Method: Composition-based stats.
 Identities = 30/315 (9%), Positives = 83/315 (26%), Gaps = 25/315 (7%)

Query: 5   VFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK 64
           +     D  ++      ++    V  +S    + ++    ++ G+ IT  D         
Sbjct: 1   MRKEAQDMKQMNKLITGVVTLATVVTLSACQSSHNNTKLVSMKGDTITVSDFYNETK--- 57

Query: 65  LQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFL 124
               N EL + A+  L++  + + +        +                 +A+ + +  
Sbjct: 58  ----NTELAQKAMLSLVISRVFETQYANKVSDKEVEKAYKQ----------TADQYGTSF 103

Query: 125 DKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVL 184
                      +    Q     +V+     +  N  +     +Q     T          
Sbjct: 104 KTVLAQSGLTPETYKKQIRLTKLVEYAVKEQAKNETISKKDYRQAYDAYTPTMTA----- 158

Query: 185 FSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHP 244
             +   K ++     + +K        + K+        +     S              
Sbjct: 159 EIMQFEKEEDAKAALEAVKAEGADFAAIAKEKTIAADKKTTYTFDSGETILPAEVVRAAS 218

Query: 245 QFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGE-IALKAYLSAQNTPTKIE--KHE 301
             +   +       +P  +++    I +  K     +  A +  L       K++    +
Sbjct: 219 GLKEGNRSEIITALDPATSKRTYHIIKVTKKATKKADWKAYQKRLKDIIVTGKLKDPDFQ 278

Query: 302 AEYVKKLRSNAIIHY 316
            + + K    A +  
Sbjct: 279 NKVIAKALDKANVKI 293


>gi|254701881|ref|ZP_05163709.1| rotamase family protein [Brucella suis bv. 5 str. 513]
 gi|261752444|ref|ZP_05996153.1| rotamase [Brucella suis bv. 5 str. 513]
 gi|261742197|gb|EEY30123.1| rotamase [Brucella suis bv. 5 str. 513]
          Length = 628

 Score = 35.8 bits (80), Expect = 8.0,   Method: Composition-based stats.
 Identities = 25/263 (9%), Positives = 63/263 (23%), Gaps = 12/263 (4%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD----I 56
           M   + ++   +I  L    +++ F I  I       M+     T     ++  D     
Sbjct: 1   MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60

Query: 57  SKRIALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLS 116
            +++  L  Q       + A    +   +  Q      +   +  +     Q A     +
Sbjct: 61  EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAACNMQLGLSQDAIARLTA 120

Query: 117 AEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVR 176
            +                           D ++N   +      +E   +  K+ +  ++
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180

Query: 177 EYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQY 236
              +        D               +E+            E            K  Y
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAY------FEAHKEDYKAPEYRKISY 234

Query: 237 LLESDLHPQFQNLLKKSQNNTTN 259
           +          +    +Q+  + 
Sbjct: 235 VKLE--PSDIADPAAVTQDEISE 255


>gi|226329058|ref|ZP_03804576.1| hypothetical protein PROPEN_02961 [Proteus penneri ATCC 35198]
 gi|225202244|gb|EEG84598.1| hypothetical protein PROPEN_02961 [Proteus penneri ATCC 35198]
          Length = 114

 Score = 35.8 bits (80), Expect = 8.0,   Method: Composition-based stats.
 Identities = 7/49 (14%), Positives = 16/49 (32%)

Query: 269 YIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
            I +    D         +++        E+     ++ L+ NA I  +
Sbjct: 61  LIQLDSVTDGKPTSEQLEFMTNLYRAQMGEEALQLMLRDLKDNAKIEIF 109


>gi|261401823|ref|ZP_05987948.1| conserved hypothetical protein [Neisseria lactamica ATCC 23970]
 gi|269208030|gb|EEZ74485.1| conserved hypothetical protein [Neisseria lactamica ATCC 23970]
          Length = 252

 Score = 35.8 bits (80), Expect = 8.0,   Method: Composition-based stats.
 Identities = 12/166 (7%), Positives = 45/166 (27%), Gaps = 9/166 (5%)

Query: 147 VVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           V     + +      E     ++ + ++  E               Q     +   + A+
Sbjct: 86  VQNRFKIAEASFYAQEYVRFLERSETVSESELRQFYERQIRMIKLQQVGFATEDEARQAQ 145

Query: 207 ESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQNLLK-KSQNNTT-NPYVTQ 264
           +  L+       ++++ +           +++   L     +     ++ + T +P    
Sbjct: 146 QLLLKGLSFEGLMKRYPNDEQAFDS----FIMAQQLPEPLASRFAAMNRGDVTRDPVKLG 201

Query: 265 KGVEYIAICDKR---DLGGEIALKAYLSAQNTPTKIEKHEAEYVKK 307
           +      + +     D      ++  L       K        +++
Sbjct: 202 ERYYLFKLSEIGKNPDAQPFELVRNQLEQGLRQEKARLKVDALLEE 247


>gi|189184244|ref|YP_001938029.1| peptidyl-prolyl cis-trans isomerse D [Orientia tsutsugamushi str.
           Ikeda]
 gi|189181015|dbj|BAG40795.1| peptidyl-prolyl cis-trans isomerse D [Orientia tsutsugamushi str.
           Ikeda]
          Length = 517

 Score = 35.8 bits (80), Expect = 8.1,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 67/228 (29%), Gaps = 13/228 (5%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVS-YKSWAMSSRIRTTINGEVITDGDISKR 59
           M +K+ T+       +    +++      I + + S   SS I T    + IT  +  + 
Sbjct: 1   MLNKLRTASHSIAFKILILILILASVFWSIGTMFHSSNNSSDIVTFTKAKNITKSEFMQA 60

Query: 60  IALLKLQKI---------NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHA 110
           + L   Q              + ++ +  LI   + +Q   +  +T  +  V  F     
Sbjct: 61  LKLAMHQIPQNSDQNLLTQNNIRELVLSNLISTHVLEQLAHEYNLTLSTAAVFKFIQNSK 120

Query: 111 RNTGLSA---EDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANK 167
                       F + L    I +  +    A Q +   +++      Y    +      
Sbjct: 121 AFNNNQNFDINIFRNILKNLHISEPQYFDQAAKQQLSEILLRQFINNNYVPSILTKNIIN 180

Query: 168 QKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKD 215
              +   ++   I      +            +   +  +S+   P+ 
Sbjct: 181 LSAETRNIQLVSIDLQNEQLQSTLDSPSSEQLQEFYNNNQSKFEKPEQ 228


>gi|326778877|ref|ZP_08238142.1| putative lipoprotein [Streptomyces cf. griseus XylebKG-1]
 gi|326659210|gb|EGE44056.1| putative lipoprotein [Streptomyces cf. griseus XylebKG-1]
          Length = 218

 Score = 35.8 bits (80), Expect = 8.5,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 40/133 (30%), Gaps = 11/133 (8%)

Query: 29  PIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLK-----------LQKINGELEKIAV 77
           P++S             + GE I    +  R A ++           L   +G+L +  +
Sbjct: 20  PLLSACGNQSHPGAAAVVGGERIEVSTVQDRAADVRSAQENSPEAAQLVNKSGQLNRAKL 79

Query: 78  QELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQY 137
             LI   +  +    +G+      +           G      +  L ++ +  +     
Sbjct: 80  HGLIFGRILDRAAADAGVAVTRKEIQEMRKASGAQQGGEERFEAMMLQQRWVAPDQIDAD 139

Query: 138 LAIQSIWPDVVKN 150
           +  +   P + + 
Sbjct: 140 MRQEVQLPKLAEA 152


>gi|332829601|gb|EGK02247.1| hypothetical protein HMPREF9455_01517 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 288

 Score = 35.8 bits (80), Expect = 8.7,   Method: Composition-based stats.
 Identities = 36/316 (11%), Positives = 76/316 (24%), Gaps = 41/316 (12%)

Query: 13  IKLLTTYFVLIIFCIVPIV-SYKSWAMSSRI---RTTINGEVITDGDISKRIALLKLQKI 68
           +K +     L     V    S    A + R      T+  + +   D+ + I +    + 
Sbjct: 1   MKKILICLHLFFMVFVAFSCSGSGAADADRALNPIVTVGDKTLYQADLDEVIPIGLSAED 60

Query: 69  NGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG 128
           +    K                       D    +      A    ++ +D    ++   
Sbjct: 61  STAAVK--------------------SYIDMWVNDQLIYNKALQNIINKKDIDELVEGYK 100

Query: 129 IGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
                             ++K  F       E++    + K K       +    L    
Sbjct: 101 KSLITSSYQ-------EQLLKEYFSKSVSENELKAYYEQNKDKFKLEDNIIKGLYLKIPV 153

Query: 189 DNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQFQN 248
           ++K         +  +                 +              +LE+        
Sbjct: 154 NSKQLANFQKWYKQGNDAAIENIEKNTLQNAVAYEYFYDKWVG--LVDVLENMPPAVTDE 211

Query: 249 LLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIA---LKAYLSAQNTPTKIEKHEAEYV 305
            +   +N       +   V  + I +    G E     +K  LS      K   +  +  
Sbjct: 212 KIFLQRNKNLELRDSSF-VYLLNIKEYELTGSEAPYDYVKGQLSEMYMEQKKADYLQQVK 270

Query: 306 KKLRSNAI----IHYY 317
           K L   A+    I +Y
Sbjct: 271 KDLYDKAVSDEEIKFY 286


>gi|256843213|ref|ZP_05548701.1| DNA-entry nuclease [Lactobacillus crispatus 125-2-CHN]
 gi|312977441|ref|ZP_07789189.1| prophage Lp1 protein 65 [Lactobacillus crispatus CTV-05]
 gi|256614633|gb|EEU19834.1| DNA-entry nuclease [Lactobacillus crispatus 125-2-CHN]
 gi|310895872|gb|EFQ44938.1| prophage Lp1 protein 65 [Lactobacillus crispatus CTV-05]
          Length = 284

 Score = 35.8 bits (80), Expect = 8.7,   Method: Composition-based stats.
 Identities = 18/195 (9%), Positives = 51/195 (26%), Gaps = 14/195 (7%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGD--ISKRIALLKLQKINGE 71
           K + T     +F      +  + ++S  +   +  + I   D    K+   +  +    E
Sbjct: 5   KKIITLVSSTLFLFGGYGAITNPSLSQNVIAKV--KTIIKYDHSAEKKTKQIAQENKQTE 62

Query: 72  LEKIAVQELIVETLKKQEIEKSGITF---------DSNTVNYFFVQHARNTGLSAEDFSS 122
            + +++ + I +  K+ +                   N      +    N    ++   S
Sbjct: 63  KKIVSLDKKIAKLRKELKKYTGKHNIESVSAAKLASLNYSGKNIITVNNNDPSFSKSDLS 122

Query: 123 FLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRT 182
                     +      + +    ++++  M       + +       K +       R 
Sbjct: 123 TNRGAWQEYGNLDGLNRVTAANALLIQS-LMPSARREPLHVDPTGWHNKRVAGGWLYNRC 181

Query: 183 VLFSIPDNKLQNQGF 197
            L         N   
Sbjct: 182 HLIGYQLTGQNNNIK 196


>gi|90578654|ref|ZP_01234464.1| hypothetical protein VAS14_03093 [Vibrio angustum S14]
 gi|90439487|gb|EAS64668.1| hypothetical protein VAS14_03093 [Vibrio angustum S14]
          Length = 269

 Score = 35.8 bits (80), Expect = 8.9,   Method: Composition-based stats.
 Identities = 17/171 (9%), Positives = 55/171 (32%), Gaps = 16/171 (9%)

Query: 1   MTSKVFTSLSDFIK-LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKR 59
           M  KV   L  FI+   + + +      +    Y S          +N   +T   + ++
Sbjct: 1   MFKKVCYWLKRFIQDPFSHFLIAGTVLFIGYSQYYSSTS-------VNTISVTPSQVQQQ 53

Query: 60  IALLKL--------QKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHAR 111
                L          +N ++  + +++++ +   K  +EK     +   +  +    ++
Sbjct: 54  KKDDTLYFGSPPSSTALNKDINHVVLKQMLSQQALKLGLEKGDPNLNEMLMQRYLSYVSQ 113

Query: 112 NTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEME 162
              ++A + +            +K        +  +   +      +++ +
Sbjct: 114 LAKINATNTTLLHQYYLTHKQRYKHPDMYSLCYHFLTPQEVQHPISSMDYQ 164


>gi|323141954|ref|ZP_08076810.1| conserved domain protein [Phascolarctobacterium sp. YIT 12067]
 gi|322413568|gb|EFY04431.1| conserved domain protein [Phascolarctobacterium sp. YIT 12067]
          Length = 227

 Score = 35.8 bits (80), Expect = 9.0,   Method: Composition-based stats.
 Identities = 21/176 (11%), Positives = 47/176 (26%), Gaps = 7/176 (3%)

Query: 13  IKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGEL 72
           +K L    V  +  +V   +    A   +    +NG   T  ++ + +      K    L
Sbjct: 1   MKRLKVVLVACLAMLVAFTALAWAATQYKTTIKVNG---TKLNVQRYVEGKGPMKDKAVL 57

Query: 73  EKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDN 132
                   +V   K++E++K     D +    F         L    +            
Sbjct: 58  LN--KDNKVVVRWKQRELKKWYY--DGDKYFRFVPYSYDMKNLKPGRYRLVTTSSFGKGG 113

Query: 133 HFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIP 188
             K+ + I       ++            ++       KN +  +     +     
Sbjct: 114 AVKKTVNISYKPQSKMQFRASKIIRKGNGDVYQRLYFKKNNSTGKTCYAQIFNKNN 169


>gi|317011211|gb|ADU84958.1| hypothetical protein HPSA_04905 [Helicobacter pylori SouthAfrica7]
          Length = 487

 Score = 35.8 bits (80), Expect = 9.0,   Method: Composition-based stats.
 Identities = 33/313 (10%), Positives = 85/313 (27%), Gaps = 20/313 (6%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           M   +       +  +    +  I   +      S+++ S     +    I+  ++++  
Sbjct: 1   MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSNSAAKVGQIKISQEELAQEY 60

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
             LK        +    +EL  E +K   +EKS    +           A + GL A   
Sbjct: 61  RRLKDAYAESIPD---FKELTEEQIKAMHLEKSA--LNILINQALLRNLALDLGLGATKQ 115

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
               + +             +     + +N +  K+    +E     QK+  +  +    
Sbjct: 116 EIAKEIRKTSVFQKDGVFDEELYKNILKQNHYRPKHFEESVEKLLIVQKISALFPKTTTP 175

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEES---RLRLPKDCNKLEKFASKIHDVSIGKAQYL 237
                     KLQ++  +        +       + K     +K   K          + 
Sbjct: 176 LEQSSLSLWAKLQDKLDILILKPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFD 235

Query: 238 LESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKI 297
              +     +     ++N  +             +  +  L    +++  +    +  K 
Sbjct: 236 ANLEKSDLKELEEYYNKNKAS------------YLDKEGKLQDFKSVQEQVKHDLSMQKA 283

Query: 298 EKHEAEYVKKLRS 310
            +        L+ 
Sbjct: 284 NEKALRSYIALKK 296


>gi|257464029|ref|ZP_05628414.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. D12]
 gi|317061550|ref|ZP_07926035.1| predicted protein [Fusobacterium sp. D12]
 gi|313687226|gb|EFS24061.1| predicted protein [Fusobacterium sp. D12]
          Length = 549

 Score = 35.8 bits (80), Expect = 9.1,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 55/173 (31%), Gaps = 5/173 (2%)

Query: 144 WPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIK 203
           +  V       +    E+E+    +   N   +   I   +  +     +      ++  
Sbjct: 272 YAKVFFEKLKSEVQVDELELSKFFKANHNRYNQHASIDVNVAVLKIAASKEDIAAIEKKA 331

Query: 204 DAEESRLRLPKDCNKLEKFASKIHDVSI-GKAQYLLESDLHPQFQNLLKKSQNNTTNP-- 260
           +     L         E+   K  D  I  +  +  +  +  +F+     S+     P  
Sbjct: 332 EEILQGLTKENFAKTGEELQKKSTDTVIYEELGWFEKGAMVKEFEEAAFSSKEAQIYPKV 391

Query: 261 YVTQKGVEYIAICDKRDLGGEIA--LKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
             TQ G   + I + ++   + A  L   +++Q++  K  +      +KL   
Sbjct: 392 ISTQFGKHLLYIQEVQENKVKAAHILFREVASQDSIAKSLREAETMKEKLDKK 444


>gi|167766180|ref|ZP_02438233.1| hypothetical protein CLOSS21_00674 [Clostridium sp. SS2/1]
 gi|167712260|gb|EDS22839.1| hypothetical protein CLOSS21_00674 [Clostridium sp. SS2/1]
 gi|291560116|emb|CBL38916.1| PPIC-type PPIASE domain [butyrate-producing bacterium SSC/2]
          Length = 369

 Score = 35.8 bits (80), Expect = 9.1,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 64/238 (26%), Gaps = 3/238 (1%)

Query: 68  INGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARN-TGLSAEDFSSFLDK 126
               +++     +I +  + + +      ++         Q   + T  + +     + K
Sbjct: 81  KKITMQQSVKDSVINQLKQIKVLAAHADDYNVKLTKSEKKQIKESVTAFAKDSTGKKVMK 140

Query: 127 QGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFS 186
           +   D    Q L  +S     V    + K      +  A   K+  +        +    
Sbjct: 141 KTEADKDMIQKLYEESTIASKVMQAIIKKANVTVTDDEAKTVKVYKLVFTTKTTDSKTGK 200

Query: 187 IPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDLHPQF 246
             D     +    K+ K A +   +     +  +KF+    +                  
Sbjct: 201 EKDMTAAEKKDQLKKAKSALKMIKKGQSISSVAKKFSVNSDNEESYTKGKAALGT--KFE 258

Query: 247 QNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKHEAEY 304
               K  +N  +           I + +  D     + K+ L  +      EK   ++
Sbjct: 259 TAAAKLKKNQVSGVVELDDAYVIIKMLNPNDTTAAASNKSTLLQEKQQAAYEKVYKKW 316


>gi|166797011|gb|AAI59135.1| LOC100145182 protein [Xenopus (Silurana) tropicalis]
          Length = 2002

 Score = 35.8 bits (80), Expect = 9.4,   Method: Composition-based stats.
 Identities = 27/264 (10%), Positives = 73/264 (27%), Gaps = 10/264 (3%)

Query: 53   DGDISKRIALLKLQKINGELEKIAV--QELIVETLKKQEIEKSGITFDSNTVNYF-FVQH 109
                 K    L+L        +  V       +   +QE+++     +         ++ 
Sbjct: 1357 KAQAEKEARELRLNMQEEVSRREVVAVDAEQQKKTIQQELQQLKQNSEMEIKTKAKLIEE 1416

Query: 110  ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQK 169
            A       E+    +  Q       K     +         +   +    + E    +++
Sbjct: 1417 AEINRTKVEEEIRIIRLQLETSQKQKSGAENELRELRARAEEAERQKRLAQEEAERLRKQ 1476

Query: 170  MKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDV 229
            +K+ T+++      L      +       QK + D E+ RL   +   ++++   +    
Sbjct: 1477 VKDETLKKREAEEELQRKVQAERDAAREKQKAMDDLEKFRLLAEEAERRMKQAEFEKERQ 1536

Query: 230  SIGKAQYLLESDLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLS 289
                   + ++    Q     +      +    T +    +          +   +    
Sbjct: 1537 -------IKQAQDVAQQSADAELQSKRMSFLEKTTQLEMSLKQEHITVTHLQEEAERLKK 1589

Query: 290  AQNTPTKIEKHEAEYVKKLRSNAI 313
             Q    K  +   + ++K R  A 
Sbjct: 1590 QQLEAEKAREDAEKELEKWRQKAN 1613


>gi|297620505|ref|YP_003708642.1| hypothetical protein wcw_0261 [Waddlia chondrophila WSU 86-1044]
 gi|297375806|gb|ADI37636.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044]
          Length = 788

 Score = 35.8 bits (80), Expect = 9.4,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 2/73 (2%)

Query: 2  TSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAM-SSRIRTT-INGEVITDGDISKR 59
             +F     F+ L+ T  ++I F      S    A  + +     ++G  +   ++ + 
Sbjct: 1  MLAIFRKYQRFLYLVITCVIVISFSFFGTYSGLQNAQPADKTVFQAVDGSDVARSELEEM 60

Query: 60 IALLKLQKINGEL 72
           A +     +  L
Sbjct: 61 AAFIGTDNEDKML 73


>gi|294509086|ref|YP_003565975.1| hypothetical protein BMQ_pBM70172 [Bacillus megaterium QM B1551]
 gi|294352390|gb|ADE72712.1| conserved hypothetical protein [Bacillus megaterium QM B1551]
          Length = 434

 Score = 35.8 bits (80), Expect = 9.4,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 40/114 (35%), Gaps = 3/114 (2%)

Query: 14  KLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELE 73
             L    +  +  ++   S K ++ + ++   +NG+ I   D++    LL+ +  +   +
Sbjct: 3   NKLYNVILYSLIIVLGFFSLKYFSTNYQVVAEVNGKEIHKKDVN---KLLEDKYFDNARD 59

Query: 74  KIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQ 127
               Q+LI     K     +    +S        + A +      +  +F    
Sbjct: 60  NYIDQQLIDLEKAKINPPTNKQLKESFRYYQLVDRKATDLESKKGEVGNFYYNN 113


>gi|149372556|ref|ZP_01891668.1| hypothetical protein SCB49_11829 [unidentified eubacterium SCB49]
 gi|149354599|gb|EDM43163.1| hypothetical protein SCB49_11829 [unidentified eubacterium SCB49]
          Length = 283

 Score = 35.8 bits (80), Expect = 9.6,   Method: Composition-based stats.
 Identities = 25/304 (8%), Positives = 80/304 (26%), Gaps = 39/304 (12%)

Query: 15  LLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEK 74
           ++   F++  F ++                 +N   + + DI+  +  +   + +  +  
Sbjct: 1   MVKWIFLIGCFFVLSSCDLLEGKDDRTPVARVNNNFLYEEDIAYLVDNIISSEDSAVV-- 58

Query: 75  IAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHF 134
                                      V+ +  + A    L ++   +  ++Q    +  
Sbjct: 59  ---------------------------VSSYINEWATEELLVSQALINISEEQQQQYDKL 91

Query: 135 KQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQN 194
            +   +  +              ++  +   +    K+ T        +       +  N
Sbjct: 92  VRQYKVSLLTEAYKNTMVSRDLDSVISQEEIDTLYNKDKTSFLLNDDLLKIRYVQLEEDN 151

Query: 195 QGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLESDL---HPQFQNLLK 251
               + +               +   +F +    V++  + ++ +  L    P F+N   
Sbjct: 152 TNVSEIKKLLKNYESSDKIALLDMALQFKT----VNLNDSVWIKKEVLFSRVPVFKNQDI 207

Query: 252 KSQNNTTNPYVTQKGVEYIAICD---KRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKL 308
              +          G+    + D   K D+     +   L       +  +      K +
Sbjct: 208 NLTSGRFAEIKDSTGIYVYKVEDRLNKGDIAPSAFIAPTLRQIILNRRKLELIRNIEKDI 267

Query: 309 RSNA 312
             +A
Sbjct: 268 TKDA 271


>gi|220928515|ref|YP_002505424.1| hypothetical protein Ccel_1085 [Clostridium cellulolyticum H10]
 gi|219998843|gb|ACL75444.1| hypothetical protein Ccel_1085 [Clostridium cellulolyticum H10]
          Length = 209

 Score = 35.8 bits (80), Expect = 9.7,   Method: Composition-based stats.
 Identities = 18/154 (11%), Positives = 44/154 (28%), Gaps = 4/154 (2%)

Query: 32  SYKSWAMSSRIRTTINGEVITDGDISKRIALLKLQKINGELEKIAVQELIVETLKKQEIE 91
           S         I  TINGE IT    +   A++  +    +  K  +  ++   +   +  
Sbjct: 44  SQTLTKAGKDIVATINGENITKKGFNTYKAMINSENKLSD--KEILDRIVESHVVYTQAV 101

Query: 92  KSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQG--IGDNHFKQYLAIQSIWPDVVK 149
           K G     + V            + ++ + +F +                  +    +++
Sbjct: 102 KEGFRVSDHQVEAAIKSAREEISMDSKQYKAFKEYISGLKMSEDEYWESVKPTYKKALIR 161

Query: 150 NDFMLKYGNLEMEIPANKQKMKNITVREYLIRTV 183
             +         ++        N    E+  R +
Sbjct: 162 GAYKNALKQKFKKVKLEDPNEVNSKFSEFYDREI 195


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.307    0.103    0.238 

Lambda     K      H
   0.267   0.0316    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,370,284,185
Number of Sequences: 14124377
Number of extensions: 36813121
Number of successful extensions: 433097
Number of sequences better than 10.0: 7286
Number of HSP's better than 10.0 without gapping: 3655
Number of HSP's successfully gapped in prelim test: 3631
Number of HSP's that attempted gapping in prelim test: 416068
Number of HSP's gapped (non-prelim): 12122
length of query: 317
length of database: 4,842,793,630
effective HSP length: 139
effective length of query: 178
effective length of database: 2,879,505,227
effective search space: 512551930406
effective search space used: 512551930406
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 80 (35.8 bits)