RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780396|ref|YP_003064809.1| peptidyl-prolyl cis-trans isomerase protein [Candidatus Liberibacter asiaticus str. psy62] (317 letters) >1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} (A:1-70,A:401-408) Length = 78 Score = 36.3 bits (84), Expect = 0.006 Identities = 10/64 (15%), Positives = 26/64 (40%), Gaps = 8/64 (12%) Query: 41 RIRTTINGEVITDGDISKRIALLK--LQKING------ELEKIAVQELIVETLKKQEIEK 92 ++ +N V+ + D+ + +K + L ++ LI++ + Q +K Sbjct: 7 KVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQK 66 Query: 93 SGIT 96 G+ Sbjct: 67 MGVK 70 >1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} (A:71-132,A:370-400) Length = 93 Score = 31.6 bits (72), Expect = 0.15 Identities = 8/43 (18%), Positives = 19/43 (44%) Query: 110 ARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152 A+ ++ + S L G+ N ++ + + I +V N+ Sbjct: 14 AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEV 56 >2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus} (A:269-404) Length = 136 Score = 30.1 bits (68), Expect = 0.44 Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 15/94 (15%) Query: 146 DVVKNDF-MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204 D++K++ ++ LE E+ K T+ L + F + Sbjct: 20 DLLKSETCSVEIPELEFELGMAVLGGKFTTLEGLLKDIR------ELVTKNPFTLGDSSN 73 Query: 205 AEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLL 238 ++S KL++F+ K+ + GK + Sbjct: 74 PDQS--------EKLQEFSQKLGQIIEGKMKAHF 99 >1ttw_B YSCM2; chaperone, type III secretion; 2.38A {Yersinia pestis CO92} (B:) Length = 56 Score = 26.6 bits (58), Expect = 4.2 Identities = 12/39 (30%), Positives = 21/39 (53%) Query: 88 QEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDK 126 Q++ IT D Y ++HA+NT L+ +D + L + Sbjct: 4 QQVSTQAITSDERRFAYAVLEHAKNTILNRQDVAKLLPR 42 >2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus} (A:62-188) Length = 127 Score = 25.5 bits (56), Expect = 9.8 Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 9/80 (11%) Query: 146 DVVKNDF-MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204 +VVK D + L+ EIPA QK TV + R + Q+Q R Sbjct: 19 EVVKTDSATTRIPELDFEIPAFSQKGALTTVEGLISRAI-----SGLEQDQPT---RRAV 70 Query: 205 AEESRLRLPKDCNKLEKFAS 224 R+ + KL+ Sbjct: 71 EGAIAERIDEFIGKLKDLKQ 90 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.318 0.135 0.377 Gapped Lambda K H 0.267 0.0523 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,265,402 Number of extensions: 99061 Number of successful extensions: 261 Number of sequences better than 10.0: 1 Number of HSP's gapped: 260 Number of HSP's successfully gapped: 11 Length of query: 317 Length of database: 4,956,049 Length adjustment: 88 Effective length of query: 229 Effective length of database: 1,981,209 Effective search space: 453696861 Effective search space used: 453696861 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 55 (25.4 bits)