RPSBLAST alignment of GI: 254780396 and SCOP domain: d1m5ya1

Alignment

>d1m5ya1 a.223.1.2 (A:25-164,A:395-427) Porin chaperone SurA, peptide-binding domain {Escherichia coli [TaxId: 562]} Length = 173

 Score = 58.6 bits (141), Expect = 7e-10
 Identities = 24/172 (13%), Positives = 61/172 (35%), Gaps = 11/172 (6%)

Query: 41  RIRTTINGEVITDGDISKRIALLKLQKIN--------GELEKIAVQELIVETLKKQEIEK 92
           ++   +N  V+ + D+   +  +KL              L    ++ LI++ +  Q  +K
Sbjct: 3   KVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQK 62

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
            G+      ++      A+   ++ +   S L   G+  N ++  +  + I  +V  N+ 
Sbjct: 63  MGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEV 122

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
             +   L  E+   +   + +     ++    FS        +      +K 
Sbjct: 123 RRRITILPQEV---ESLAQQVDRAYRMLMNRKFSEEAASWMQEQRASAYVKI 171

SCOP domain information

class: All alpha proteins
fold: Triger factor/SurA peptide-binding domain-like
superfamily: Triger factor/SurA peptide-binding domain-like
family: Porin chaperone SurA, peptide-binding domain
domain: Porin chaperone SurA, peptide-binding domain
species: Escherichia coli [TaxId: 562]