RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780396|ref|YP_003064809.1| peptidyl-prolyl cis-trans isomerase protein [Candidatus Liberibacter asiaticus str. psy62] (317 letters) >d1m5ya1 a.223.1.2 (A:25-164,A:395-427) Porin chaperone SurA, peptide-binding domain {Escherichia coli [TaxId: 562]} Length = 173 Score = 58.6 bits (141), Expect = 7e-10 Identities = 24/172 (13%), Positives = 61/172 (35%), Gaps = 11/172 (6%) Query: 41 RIRTTINGEVITDGDISKRIALLKLQKIN--------GELEKIAVQELIVETLKKQEIEK 92 ++ +N V+ + D+ + +KL L ++ LI++ + Q +K Sbjct: 3 KVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQK 62 Query: 93 SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152 G+ ++ A+ ++ + S L G+ N ++ + + I +V N+ Sbjct: 63 MGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEV 122 Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204 + L E+ + + + ++ FS + +K Sbjct: 123 RRRITILPQEV---ESLAQQVDRAYRMLMNRKFSEEAASWMQEQRASAYVKI 171 >d1a62a2 b.40.4.5 (A:48-125) Rho termination factor, RNA-binding domain {Escherichia coli [TaxId: 562]} Length = 78 Score = 26.6 bits (59), Expect = 2.8 Identities = 9/31 (29%), Positives = 18/31 (58%) Query: 41 RIRTTINGEVITDGDISKRIALLKLQKINGE 71 R TI+G++ + + ALLK+ ++N + Sbjct: 45 RTGDTISGKIRPPKEGERYFALLKVNEVNFD 75 >d1p7ga1 a.2.11.1 (A:12-103) Fe superoxide dismutase (FeSOD) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 92 Score = 25.4 bits (55), Expect = 6.2 Identities = 9/29 (31%), Positives = 14/29 (48%) Query: 283 ALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311 AL+ Y+SA+ +KH YV + Sbjct: 18 ALEPYISAEIMQLHHQKHHQGYVNGANAA 46 >d1rm6c2 d.15.4.2 (C:1-81) 4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, N-terminal domain {Thauera aromatica [TaxId: 59405]} Length = 81 Score = 25.2 bits (55), Expect = 7.1 Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%) Query: 38 MSSRIRTTINGEVITDGDISKRIALL 63 M + +R T+NG D + + LL Sbjct: 1 MKNILRLTLNGRARED-LVPDNMLLL 25 >d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350 Score = 25.0 bits (54), Expect = 7.9 Identities = 7/45 (15%), Positives = 19/45 (42%) Query: 273 CDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317 +R G A K ++ + + + E + + LR +++ + Sbjct: 45 VTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLH 89 >d1ewfa2 d.83.1.1 (A:218-456) Bactericidal permeability-increasing protein, BPI {Human (Homo sapiens) [TaxId: 9606]} Length = 239 Score = 24.8 bits (54), Expect = 9.1 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 5/46 (10%) Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206 ME PA +M + + +Y T Q G ++ ++D Sbjct: 27 MEFPAAHDRMVYLGLSDYFFNTAGLV-----YQEAGVLKMTLRDDM 67 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.318 0.135 0.377 Gapped Lambda K H 0.267 0.0546 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,145,075 Number of extensions: 52732 Number of successful extensions: 154 Number of sequences better than 10.0: 1 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 8 Length of query: 317 Length of database: 2,407,596 Length adjustment: 85 Effective length of query: 232 Effective length of database: 1,240,546 Effective search space: 287806672 Effective search space used: 287806672 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 53 (24.6 bits)