RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780396|ref|YP_003064809.1| peptidyl-prolyl cis-trans
isomerase protein [Candidatus Liberibacter asiaticus str. psy62]
         (317 letters)



>d1m5ya1 a.223.1.2 (A:25-164,A:395-427) Porin chaperone SurA,
           peptide-binding domain {Escherichia coli [TaxId: 562]}
          Length = 173

 Score = 58.6 bits (141), Expect = 7e-10
 Identities = 24/172 (13%), Positives = 61/172 (35%), Gaps = 11/172 (6%)

Query: 41  RIRTTINGEVITDGDISKRIALLKLQKIN--------GELEKIAVQELIVETLKKQEIEK 92
           ++   +N  V+ + D+   +  +KL              L    ++ LI++ +  Q  +K
Sbjct: 3   KVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQK 62

Query: 93  SGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF 152
            G+      ++      A+   ++ +   S L   G+  N ++  +  + I  +V  N+ 
Sbjct: 63  MGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEV 122

Query: 153 MLKYGNLEMEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKD 204
             +   L  E+   +   + +     ++    FS        +      +K 
Sbjct: 123 RRRITILPQEV---ESLAQQVDRAYRMLMNRKFSEEAASWMQEQRASAYVKI 171


>d1a62a2 b.40.4.5 (A:48-125) Rho termination factor, RNA-binding
          domain {Escherichia coli [TaxId: 562]}
          Length = 78

 Score = 26.6 bits (59), Expect = 2.8
 Identities = 9/31 (29%), Positives = 18/31 (58%)

Query: 41 RIRTTINGEVITDGDISKRIALLKLQKINGE 71
          R   TI+G++    +  +  ALLK+ ++N +
Sbjct: 45 RTGDTISGKIRPPKEGERYFALLKVNEVNFD 75


>d1p7ga1 a.2.11.1 (A:12-103) Fe superoxide dismutase (FeSOD)
           {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
          Length = 92

 Score = 25.4 bits (55), Expect = 6.2
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 283 ALKAYLSAQNTPTKIEKHEAEYVKKLRSN 311
           AL+ Y+SA+      +KH   YV    + 
Sbjct: 18  ALEPYISAEIMQLHHQKHHQGYVNGANAA 46


>d1rm6c2 d.15.4.2 (C:1-81) 4-hydroxybenzoyl-CoA reductase gamma
          subunit HrcC, N-terminal domain {Thauera aromatica
          [TaxId: 59405]}
          Length = 81

 Score = 25.2 bits (55), Expect = 7.1
 Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)

Query: 38 MSSRIRTTINGEVITDGDISKRIALL 63
          M + +R T+NG    D  +   + LL
Sbjct: 1  MKNILRLTLNGRARED-LVPDNMLLL 25


>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain
           {Caenorhabditis elegans, pjk4 [TaxId: 6239]}
          Length = 350

 Score = 25.0 bits (54), Expect = 7.9
 Identities = 7/45 (15%), Positives = 19/45 (42%)

Query: 273 CDKRDLGGEIALKAYLSAQNTPTKIEKHEAEYVKKLRSNAIIHYY 317
             +R  G   A K  ++   +  +  + E + +  LR   +++ +
Sbjct: 45  VTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLH 89


>d1ewfa2 d.83.1.1 (A:218-456) Bactericidal permeability-increasing
           protein, BPI {Human (Homo sapiens) [TaxId: 9606]}
          Length = 239

 Score = 24.8 bits (54), Expect = 9.1
 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 5/46 (10%)

Query: 161 MEIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKRIKDAE 206
           ME PA   +M  + + +Y   T          Q  G ++  ++D  
Sbjct: 27  MEFPAAHDRMVYLGLSDYFFNTAGLV-----YQEAGVLKMTLRDDM 67


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.377 

Gapped
Lambda     K      H
   0.267   0.0546    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,145,075
Number of extensions: 52732
Number of successful extensions: 154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 8
Length of query: 317
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,240,546
Effective search space: 287806672
Effective search space used: 287806672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.6 bits)