BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780396|ref|YP_003064809.1| peptidyl-prolyl cis-trans
isomerase protein [Candidatus Liberibacter asiaticus str. psy62]
         (317 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780396|ref|YP_003064809.1| peptidyl-prolyl cis-trans isomerase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 317

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/317 (100%), Positives = 317/317 (100%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60
           MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI
Sbjct: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRTTINGEVITDGDISKRI 60

Query: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120
           ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF
Sbjct: 61  ALLKLQKINGELEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDF 120

Query: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180
           SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI
Sbjct: 121 SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDFMLKYGNLEMEIPANKQKMKNITVREYLI 180

Query: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240
           RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES
Sbjct: 181 RTVLFSIPDNKLQNQGFVQKRIKDAEESRLRLPKDCNKLEKFASKIHDVSIGKAQYLLES 240

Query: 241 DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH 300
           DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH
Sbjct: 241 DLHPQFQNLLKKSQNNTTNPYVTQKGVEYIAICDKRDLGGEIALKAYLSAQNTPTKIEKH 300

Query: 301 EAEYVKKLRSNAIIHYY 317
           EAEYVKKLRSNAIIHYY
Sbjct: 301 EAEYVKKLRSNAIIHYY 317


>gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 565

 Score = 30.0 bits (66), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 4/42 (9%)

Query: 1   MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRI 42
           +TS V  +L D   L T  F+++ FCI PI+   SWA+ S I
Sbjct: 123 ITSPVLPALLDI--LFTPIFIILSFCIHPILG--SWAILSGI 160


>gi|254781141|ref|YP_003065554.1| hypothetical protein CLIBASIA_05225 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 196

 Score = 23.1 bits (48), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 7/78 (8%)

Query: 100 NTVNYFFVQHARNTGLSAEDF-SSFLDKQGIGDNHFKQYLAIQSIWPDVVKNDF--MLKY 156
           N +N+F V+  RN    A++  S  L+K+ I +N   ++L  Q+  P   +N F  + + 
Sbjct: 51  NIINHF-VETGRNPDNIAKELDSEILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRI 109

Query: 157 GNLEMEIPANKQKMKNIT 174
           GN+   +   K++M +IT
Sbjct: 110 GNI---LGFQKEEMVDIT 124


>gi|254781176|ref|YP_003065589.1| cell division protein FtsZ [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 502

 Score = 23.1 bits (48), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 8/91 (8%)

Query: 83  ETLKKQEIEKSGITFDSNTVNYFFVQHARNTGLSAEDFSSFLDKQGIGDNHFKQYLAIQS 142
           E  ++  + +SGI     TV+   V   +N    A D ++F D   + D     Y  +  
Sbjct: 142 EGSRRMRVAESGIEALQETVDTLIVIPNQNLFRIANDKTTFADAFSMADQVL--YSGVSC 199

Query: 143 IWPDVVKNDFMLKYGNLEMEIPANKQKMKNI 173
           I       D M+K G + ++    +  M+N+
Sbjct: 200 IT------DLMIKEGLINLDFADVRSVMRNM 224


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.135    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 202,859
Number of Sequences: 1233
Number of extensions: 8547
Number of successful extensions: 24
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 6
length of query: 317
length of database: 328,796
effective HSP length: 74
effective length of query: 243
effective length of database: 237,554
effective search space: 57725622
effective search space used: 57725622
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 38 (19.2 bits)