254780397
4-hydroxythreonine-4-phosphate dehydrogenase
GeneID in NCBI database: | 8209382 | Locus tag: | CLIBASIA_01410 |
Protein GI in NCBI database: | 254780397 | Protein Accession: | YP_003064810.1 |
Gene range: | +(298091, 299122) | Protein Length: | 343aa |
Gene description: | 4-hydroxythreonine-4-phosphate dehydrogenase | ||
COG prediction: | [H] Pyridoxal phosphate biosynthesis protein | ||
KEGG prediction: | pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262); K00097 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] | ||
SEED prediction: | 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) | ||
Pathway involved in KEGG: | Vitamin B6 metabolism [PATH:las00750] | ||
Subsystem involved in SEED: | Pyridoxin (Vitamin B6) Biosynthesis | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 343 | 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatu | |||
315122191 | 341 | 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatu | 1 | 1e-159 | |
241203945 | 342 | 4-hydroxythreonine-4-phosphate dehydrogenase [Rhizobium | 1 | 1e-115 | |
209548667 | 342 | 4-hydroxythreonine-4-phosphate dehydrogenase [Rhizobium | 1 | 1e-114 | |
218509346 | 342 | 4-hydroxythreonine-4-phosphate dehydrogenase [Rhizobium | 1 | 1e-114 | |
116251331 | 342 | 4-hydroxythreonine-4-phosphate dehydrogenase [Rhizobium | 1 | 1e-114 | |
86357088 | 342 | 4-hydroxythreonine-4-phosphate dehydrogenase [Rhizobium | 1 | 1e-113 | |
190891132 | 342 | 4-hydroxythreonine-4-phosphate dehydrogenase [Rhizobium | 1 | 1e-113 | |
327188009 | 342 | 4-hydroxythreonine-4-phosphate dehydrogenase protein [R | 1 | 1e-113 | |
222085449 | 341 | 4-hydroxythreonine-4-phosphate dehydrogenase [Agrobacte | 1 | 1e-108 | |
222148149 | 346 | 4-hydroxythreonine-4-phosphate dehydrogenase [Agrobacte | 1 | 1e-106 |
>gi|315122191|ref|YP_004062680.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 341 | Back alignment and organism information |
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Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 276/332 (83%), Positives = 302/332 (90%) Query: 5 LPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDC 64 LPLILTQGDPAGIGPDISLKAWA+R+I +IPPFIYIGD DVLN RAKQLNL++PLYETDC Sbjct: 8 LPLILTQGDPAGIGPDISLKAWANRRIRSIPPFIYIGDPDVLNERAKQLNLNIPLYETDC 67 Query: 65 KNAVSIFKKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIA 124 +AVS F+KALPIISSPCG KI+TG P P+TAS+TIANIEKAVSLTLSGQALA+VTNP++ Sbjct: 68 AHAVSSFEKALPIISSPCGFKIITGIPQPKTASNTIANIEKAVSLTLSGQALAMVTNPVS 127 Query: 125 KFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRILS 184 KFLLY+EKF F GHTEFLAELAKKNTGIT+KPVMMLS PQLRTVPVTIHIP+A+I ILS Sbjct: 128 KFLLYKEKFNFLGHTEFLAELAKKNTGITYKPVMMLSNPQLRTVPVTIHIPLANIVHILS 187 Query: 185 TKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDN 244 K IIET TV+NAM+K F IN+PRIAISGLNPHAGENATIG+EEK+II PAI L+ +N Sbjct: 188 KKLIIETCHTVHNAMEKNFKINHPRIAISGLNPHAGENATIGMEEKDIISPAIVQLKKEN 247 Query: 245 KNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDH 304 KNIIGPLPADSMFHHSARQ YDVAICMYHDQALIP+KTL FNQTVNITLGLPF+RTSPDH Sbjct: 248 KNIIGPLPADSMFHHSARQNYDVAICMYHDQALIPVKTLSFNQTVNITLGLPFIRTSPDH 307 Query: 305 GTAFDIAGSSLTQEESLVSALKIAAQLGYQKN 336 GTAFDIAG EESLVSALKIAAQLGYQKN Sbjct: 308 GTAFDIAGGPNVHEESLVSALKIAAQLGYQKN 339 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|241203945|ref|YP_002975041.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 342 | Back alignment and organism information |
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>gi|209548667|ref|YP_002280584.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 342 | Back alignment and organism information |
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>gi|218509346|ref|ZP_03507224.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Rhizobium etli Brasil 5] Length = 342 | Back alignment and organism information |
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>gi|116251331|ref|YP_767169.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Rhizobium leguminosarum bv. viciae 3841] Length = 342 | Back alignment and organism information |
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>gi|86357088|ref|YP_468980.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Rhizobium etli CFN 42] Length = 342 | Back alignment and organism information |
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>gi|190891132|ref|YP_001977674.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Rhizobium etli CIAT 652] Length = 342 | Back alignment and organism information |
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>gi|327188009|gb|EGE55239.1| 4-hydroxythreonine-4-phosphate dehydrogenase protein [Rhizobium etli CNPAF512] Length = 342 | Back alignment and organism information |
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>gi|222085449|ref|YP_002543979.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Agrobacterium radiobacter K84] Length = 341 | Back alignment and organism information |
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>gi|222148149|ref|YP_002549106.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Agrobacterium vitis S4] Length = 346 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 343 | 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatu | ||
PRK05312 | 336 | PRK05312, pdxA, 4-hydroxythreonine-4-phosphate dehydrog | 1e-142 | |
TIGR00557 | 320 | TIGR00557, pdxA, 4-hydroxythreonine-4-phosphate dehydro | 1e-119 | |
pfam04166 | 299 | pfam04166, PdxA, Pyridoxal phosphate biosynthetic prote | 5e-87 | |
PRK00232 | 332 | PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrog | 2e-81 | |
PRK02746 | 345 | PRK02746, pdxA, 4-hydroxythreonine-4-phosphate dehydrog | 4e-78 | |
PRK03743 | 332 | PRK03743, pdxA, 4-hydroxythreonine-4-phosphate dehydrog | 2e-61 | |
PRK01909 | 329 | PRK01909, pdxA, 4-hydroxythreonine-4-phosphate dehydrog | 4e-57 | |
PRK03371 | 326 | PRK03371, pdxA, 4-hydroxythreonine-4-phosphate dehydrog | 4e-52 | |
PRK03946 | 307 | PRK03946, pdxA, 4-hydroxythreonine-4-phosphate dehydrog | 8e-47 | |
COG1995 | 332 | COG1995, PdxA, Pyridoxal phosphate biosynthesis protein | 1e-100 |
>gnl|CDD|180008 PRK05312, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional | Back alignment and domain information |
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>gnl|CDD|161928 TIGR00557, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase | Back alignment and domain information |
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>gnl|CDD|112956 pfam04166, PdxA, Pyridoxal phosphate biosynthetic protein PdxA | Back alignment and domain information |
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>gnl|CDD|178940 PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
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>gnl|CDD|179467 PRK02746, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional | Back alignment and domain information |
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>gnl|CDD|179641 PRK03743, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
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>gnl|CDD|179351 PRK01909, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
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>gnl|CDD|179572 PRK03371, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional | Back alignment and domain information |
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>gnl|CDD|179681 PRK03946, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional | Back alignment and domain information |
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>gnl|CDD|32178 COG1995, PdxA, Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism] | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 343 | 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatu | ||
PRK05312 | 336 | pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Prov | 100.0 | |
PRK00232 | 334 | pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Revi | 100.0 | |
PRK03743 | 333 | pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Vali | 100.0 | |
PRK03367 | 329 | consensus | 100.0 | |
PRK04607 | 330 | consensus | 100.0 | |
PRK03877 | 328 | consensus | 100.0 | |
PRK02848 | 341 | consensus | 100.0 | |
PRK04507 | 323 | consensus | 100.0 | |
PRK01909 | 329 | pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Vali | 100.0 | |
PRK03371 | 326 | pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Pr | 100.0 | |
PRK02746 | 332 | pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Prov | 100.0 | |
COG1995 | 332 | PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme | 100.0 | |
PRK03946 | 304 | pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Prov | 100.0 | |
TIGR00557 | 325 | pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Inte | 100.0 | |
PRK11890 | 312 | phosphate acetyltransferase; Provisional | 99.3 | |
PRK05805 | 301 | phosphate butyryltransferase; Validated | 99.03 | |
PRK09653 | 324 | eutD phosphotransacetylase; Reviewed | 99.01 | |
PRK07742 | 299 | phosphate butyryltransferase; Validated | 98.91 | |
COG0280 | 327 | Pta Phosphotransacetylase [Energy production and conver | 98.88 | |
PRK05331 | 317 | putative glycerol-3-phosphate acyltransferase PlsX; Pro | 98.67 | |
PRK13846 | 316 | putative glycerol-3-phosphate acyltransferase PlsX; Pro | 98.6 | |
pfam02504 | 322 | FA_synthesis Fatty acid synthesis protein. The plsX gen | 98.58 | |
COG0416 | 338 | PlsX Fatty acid/phospholipid biosynthesis enzyme [Lipid | 98.29 | |
TIGR00182 | 344 | plsX fatty acid/phospholipid synthesis protein PlsX; In | 97.48 | |
TIGR02706 | 295 | P_butyryltrans phosphate butyryltransferase; InterPro: | 97.29 | |
pfam04166 | 299 | PdxA Pyridoxal phosphate biosynthetic protein PdxA. In | 100.0 | |
PRK08190 | 465 | bifunctional enoyl-CoA hydratase/phosphate acetyltransf | 98.47 | |
PRK13845 | 437 | putative glycerol-3-phosphate acyltransferase PlsX; Pro | 97.73 | |
pfam01515 | 319 | PTA_PTB Phosphate acetyl/butaryl transferase. This fami | 99.08 | |
PRK12861 | 762 | malic enzyme; Reviewed | 98.75 | |
PRK07232 | 753 | malic enzyme; Reviewed | 98.74 | |
PRK12862 | 761 | malic enzyme; Reviewed | 98.68 | |
PRK05632 | 702 | phosphate acetyltransferase; Reviewed | 98.17 | |
TIGR02088 | 350 | LEU3_arch isopropylmalate/isohomocitrate dehydrogenases | 98.13 | |
PRK08997 | 334 | isocitrate dehydrogenase; Provisional | 97.27 | |
pfam00180 | 349 | Iso_dh Isocitrate/isopropylmalate dehydrogenase. | 97.25 | |
COG0473 | 348 | LeuB Isocitrate/isopropylmalate dehydrogenase [Amino ac | 97.04 | |
PRK08194 | 352 | tartrate dehydrogenase; Provisional | 96.88 | |
PRK09222 | 482 | isocitrate dehydrogenase; Validated | 96.8 | |
PRK00772 | 352 | 3-isopropylmalate dehydrogenase; Provisional | 96.69 | |
PRK03437 | 345 | 3-isopropylmalate dehydrogenase; Provisional | 96.62 | |
KOG0785 | 365 | consensus | 94.04 | |
TIGR03270 | 202 | methan_mark_4 putative methanogen marker protein 4. Mem | 96.97 | |
PRK06451 | 415 | isocitrate dehydrogenase; Validated | 96.87 | |
PRK07362 | 474 | isocitrate dehydrogenase; Validated | 96.8 | |
PRK07006 | 409 | isocitrate dehydrogenase; Reviewed | 96.61 | |
COG0538 | 407 | Icd Isocitrate dehydrogenases [Energy production and co | 94.96 | |
TIGR00169 | 370 | leuB 3-isopropylmalate dehydrogenase; InterPro: IPR0044 | 93.47 | |
TIGR02924 | 481 | ICDH_alpha isocitrate dehydrogenase; InterPro: IPR01427 | 96.51 | |
TIGR02089 | 355 | TTC tartrate dehydrogenase; InterPro: IPR011829 Tartrat | 96.47 | |
TIGR00651 | 322 | pta phosphate acetyltransferase; InterPro: IPR004614 Ph | 91.83 | |
PRK09222 | 482 | isocitrate dehydrogenase; Validated | 91.41 | |
TIGR00169 | 370 | leuB 3-isopropylmalate dehydrogenase; InterPro: IPR0044 | 91.08 | |
PRK03437 | 345 | 3-isopropylmalate dehydrogenase; Provisional | 91.05 |
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional | Back alignment and domain information |
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>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
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>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
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>PRK03367 consensus | Back alignment and domain information |
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>PRK04607 consensus | Back alignment and domain information |
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>PRK03877 consensus | Back alignment and domain information |
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>PRK02848 consensus | Back alignment and domain information |
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>PRK04507 consensus | Back alignment and domain information |
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>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
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>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional | Back alignment and domain information |
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>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional | Back alignment and domain information |
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>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism] | Back alignment and domain information |
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>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional | Back alignment and domain information |
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>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
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>PRK11890 phosphate acetyltransferase; Provisional | Back alignment and domain information |
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>PRK05805 phosphate butyryltransferase; Validated | Back alignment and domain information |
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>PRK09653 eutD phosphotransacetylase; Reviewed | Back alignment and domain information |
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>PRK07742 phosphate butyryltransferase; Validated | Back alignment and domain information |
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>COG0280 Pta Phosphotransacetylase [Energy production and conversion] | Back alignment and domain information |
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>PRK05331 putative glycerol-3-phosphate acyltransferase PlsX; Provisional | Back alignment and domain information |
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>PRK13846 putative glycerol-3-phosphate acyltransferase PlsX; Provisional | Back alignment and domain information |
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>pfam02504 FA_synthesis Fatty acid synthesis protein | Back alignment and domain information |
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>COG0416 PlsX Fatty acid/phospholipid biosynthesis enzyme [Lipid metabolism] | Back alignment and domain information |
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>TIGR00182 plsX fatty acid/phospholipid synthesis protein PlsX; InterPro: IPR003664 The plsX gene is part of the bacterial fab gene cluster which encodes several key fatty acid biosynthetic enzymes | Back alignment and domain information |
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>TIGR02706 P_butyryltrans phosphate butyryltransferase; InterPro: IPR014079 Members of this family are phosphate butyryltransferase enzymes, also called phosphotransbutyrylase | Back alignment and domain information |
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>pfam04166 PdxA Pyridoxal phosphate biosynthetic protein PdxA | Back alignment and domain information |
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>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated | Back alignment and domain information |
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>PRK13845 putative glycerol-3-phosphate acyltransferase PlsX; Provisional | Back alignment and domain information |
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>pfam01515 PTA_PTB Phosphate acetyl/butaryl transferase | Back alignment and domain information |
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>PRK12861 malic enzyme; Reviewed | Back alignment and domain information |
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>PRK07232 malic enzyme; Reviewed | Back alignment and domain information |
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>PRK12862 malic enzyme; Reviewed | Back alignment and domain information |
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>PRK05632 phosphate acetyltransferase; Reviewed | Back alignment and domain information |
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>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases; InterPro: IPR011828 This entry represents a group of archaeal decarboxylating dehydrogenases which include the leucine biosynthesis enzyme 3-isopropylmalate dehydrogenase (LeuB, LEU3) and the methanogenic cofactor CoB biosynthesis enzyme isohomocitrate dehydrogenase (AksF) | Back alignment and domain information |
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>PRK08997 isocitrate dehydrogenase; Provisional | Back alignment and domain information |
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>pfam00180 Iso_dh Isocitrate/isopropylmalate dehydrogenase | Back alignment and domain information |
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>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
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>PRK08194 tartrate dehydrogenase; Provisional | Back alignment and domain information |
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>PRK09222 isocitrate dehydrogenase; Validated | Back alignment and domain information |
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>PRK00772 3-isopropylmalate dehydrogenase; Provisional | Back alignment and domain information |
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>PRK03437 3-isopropylmalate dehydrogenase; Provisional | Back alignment and domain information |
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>KOG0785 consensus | Back alignment and domain information |
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>TIGR03270 methan_mark_4 putative methanogen marker protein 4 | Back alignment and domain information |
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>PRK06451 isocitrate dehydrogenase; Validated | Back alignment and domain information |
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>PRK07362 isocitrate dehydrogenase; Validated | Back alignment and domain information |
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>PRK07006 isocitrate dehydrogenase; Reviewed | Back alignment and domain information |
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>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
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>TIGR00169 leuB 3-isopropylmalate dehydrogenase; InterPro: IPR004429 Several NAD- or NADP-dependent dehydrogenases, including 3-isopropylmalate dehydrogenase, tartrate dehydrogenase, and the dimeric forms of isocitrate dehydrogenase, share a nucleotide binding domain unrelated to that of lactate dehydrogenase and its homologs | Back alignment and domain information |
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>TIGR02924 ICDH_alpha isocitrate dehydrogenase; InterPro: IPR014273 This entry represents a group of isocitrate dehydrogenases found mainly in the alphaproteobacteria | Back alignment and domain information |
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>TIGR02089 TTC tartrate dehydrogenase; InterPro: IPR011829 Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate | Back alignment and domain information |
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>TIGR00651 pta phosphate acetyltransferase; InterPro: IPR004614 Phosphate acetyltransferase (2 | Back alignment and domain information |
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>PRK09222 isocitrate dehydrogenase; Validated | Back alignment and domain information |
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>TIGR00169 leuB 3-isopropylmalate dehydrogenase; InterPro: IPR004429 Several NAD- or NADP-dependent dehydrogenases, including 3-isopropylmalate dehydrogenase, tartrate dehydrogenase, and the dimeric forms of isocitrate dehydrogenase, share a nucleotide binding domain unrelated to that of lactate dehydrogenase and its homologs | Back alignment and domain information |
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>PRK03437 3-isopropylmalate dehydrogenase; Provisional | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 343 | 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatu | ||
1ps6_A | 328 | Crystal Structure Of E.Coli Pdxa Length = 328 | 4e-59 | |
3lxy_A | 334 | Crystal Structure Of 4-Hydroxythreonine-4-Phosphate | 5e-58 | |
2hi1_A | 330 | The Structure Of A Putative 4-Hydroxythreonine-4-Ph | 7e-56 | |
1ps7_A | 329 | Crystal Structure Of E.Coli Pdxa Length = 329 | 1e-54 | |
1ptm_A | 329 | Crystal Structure Of E.Coli Pdxa Length = 329 | 7e-54 | |
1yxo_A | 328 | Crystal Structure Of Pyridoxal Phosphate Biosynthet | 2e-53 | |
1r8k_A | 329 | Pdxa Protein; Nad-Dependent DehydrogenaseCARBOXYLAS | 9e-48 |
>gi|38492838|pdb|1PS6|A Chain A, Crystal Structure Of E.Coli Pdxa Length = 328 | Back alignment and structure |
Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 109/333 (32%), Positives = 168/333 (50%), Gaps = 9/333 (2%) Query: 3 EFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYET 62 + +++T G+PAGIGPD+ ++ A R+ + D +L RA L L + L Sbjct: 2 KTQRVVITPGEPAGIGPDLVVQ-LAQREWP--VELVVCADATLLTNRAAMLGLPLTLRPY 58 Query: 63 DCKNAVSIF-KKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTN 121 + L ++ A + G + + + +A L+G+ A++T Sbjct: 59 SPNSPAQPQTAGTLTLLPVALRAPVTAGQLAVENGHYVVETLARACDGCLNGEFAALITG 118 Query: 122 PIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICR 181 P+ K ++ F GHTEF E ++ K VMML+ +LR T H+P+ DI Sbjct: 119 PVHKGVINDAGIPFTGHTEFFEERSQA-----KKVVMMLATEELRVALATTHLPLRDIAD 173 Query: 182 ILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLR 241 ++ + E +++ ++ FGI PRI + GLNPHAGE +G EE + IIP + LR Sbjct: 174 AITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPVLNELR 233 Query: 242 NDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTS 301 + GPLPAD++F D + MYHDQ L +K F + VNITLGLPF+RTS Sbjct: 234 AQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTS 293 Query: 302 PDHGTAFDIAGSSLTQEESLVSALKIAAQLGYQ 334 DHGTA ++AG S ++AL +A ++ Sbjct: 294 VDHGTALELAGRGKADVGSFITALNLAIKMIVN 326 |
>gi|290790350|pdb|3LXY|A Chain A, Crystal Structure Of 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Yersinia Pestis Co92 Length = 334 | Back alignment and structure |
>gi|112491359|pdb|2HI1|A Chain A, The Structure Of A Putative 4-Hydroxythreonine-4-Phosphate Dehydrogenase From Salmonella Typhimurium. Length = 330 | Back alignment and structure |
>gi|38492840|pdb|1PS7|A Chain A, Crystal Structure Of E.Coli Pdxa Length = 329 | Back alignment and structure |
>gi|38492845|pdb|1PTM|A Chain A, Crystal Structure Of E.Coli Pdxa Length = 329 | Back alignment and structure |
>gi|62738825|pdb|1YXO|A Chain A, Crystal Structure Of Pyridoxal Phosphate Biosynthetic Protein Pdxa Pa0593 Length = 328 | Back alignment and structure |
>gi|39654841|pdb|1R8K|A Chain A, Pdxa Protein; Nad-Dependent DehydrogenaseCARBOXYLASE; Subunit Of Pyridoxine Phosphate Biosynthetic Protein Pdxj- Pdxa [salmonella Typhimurium] Length = 329 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 343 | 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatu | ||
3lxy_A | 334 | 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD | 7e-84 | |
1ptm_A | 329 | 4-hydroxythreonine-4-phosphate dehydrogenase; crystal s | 3e-79 | |
1yxo_A | 328 | 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593, | 3e-61 | |
2hi1_A | 330 | 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridox | 1e-57 |
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD- dependent, metal-binding, NAD, NADP, oxidoreductase, pyridoxine biosynthesis; HET: SUC; 1.70A {Yersinia pestis} PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A Length = 334 | Back alignment and structure |
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Score = 305 bits (783), Expect = 7e-84 Identities = 117/332 (35%), Positives = 175/332 (52%), Gaps = 9/332 (2%) Query: 6 PLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCK 65 L++T G+PAG+GPD+++ + D +L ARA QLNL + L E Sbjct: 10 RLVITPGEPAGVGPDLAITLAQQDWPV---ELVVCADPALLLARASQLNLPLQLREYQAD 66 Query: 66 N-AVSIFKKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIA 124 A++ +L I+ +V G + + + + KA +SG+ A+VT P+ Sbjct: 67 QPAIAQQAGSLTILPVKTAVNVVPGKLDVGNSHYVVETLAKACDGAISGEFAALVTGPVQ 126 Query: 125 KFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRILS 184 K ++ F GHTEF A+ + + VMML+ +LR T H+P+ + ++ Sbjct: 127 KSIINDAGIPFIGHTEFFADRSH-----CQRVVMMLATEELRVALATTHLPLLAVPGAIT 181 Query: 185 TKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDN 244 + E + N +K FGI P+I + GLNPHAGE +G EE + IIPA+ LR Sbjct: 182 QASLHEVITILDNDLKTKFGITQPQIYVCGLNPHAGEGGHMGHEEIDTIIPALNTLRQQG 241 Query: 245 KNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDH 304 N+IGPLPAD++F Q D + MYHDQ L +K F + VNITLGLPF+RTS DH Sbjct: 242 INLIGPLPADTLFQPKYLQHADAVLAMYHDQGLPVLKYQGFGRAVNITLGLPFIRTSVDH 301 Query: 305 GTAFDIAGSSLTQEESLVSALKIAAQLGYQKN 336 GTA ++A + S ++AL +A ++ N Sbjct: 302 GTALELAATGTADVGSFITALNLAIKMINNSN 333 |
>1ptm_A 4-hydroxythreonine-4-phosphate dehydrogenase; crystal strucrure, PDXA, pyridoxal 5'-phosphate biosynthesis, PLP; 1.96A {Escherichia coli} SCOP: c.77.1.3 PDB: 1ps7_A 1ps6_A* 1r8k_A Length = 329 | Back alignment and structure |
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>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural genomics, PSI; 2.01A {Pseudomonas aeruginosa} Length = 328 | Back alignment and structure |
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>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural genomics, PSI-2; 2.30A {Salmonella typhimurium LT2} Length = 330 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 343 | 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatu | ||
3lxy_A | 334 | 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD | 100.0 | |
1yxo_A | 328 | 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593, | 100.0 | |
2hi1_A | 330 | 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridox | 100.0 | |
1td9_A | 329 | Phosphate acetyltransferase; structural genomics, BSGC | 99.05 | |
1vmi_A | 355 | Putative phosphate acetyltransferase; NP_416953.1, stru | 99.04 | |
2af4_C | 333 | Phosphate acetyltransferase; PTA dimer with one COA lig | 98.99 | |
1r5j_A | 337 | Putative phosphotransacetylase; lactate dehydrogenase-l | 98.85 | |
1u7n_A | 336 | Fatty acid/phospholipid synthesis protein PLSX; structu | 98.27 | |
1vi1_A | 345 | Fatty acid/phospholipid synthesis protein PLSX; structu | 98.16 | |
1yco_A | 279 | Branched-chain phosphotransacylase; structural genomics | 98.14 | |
2e0c_A | 409 | 409AA long hypothetical NADP-dependent isocitrate dehyd | 97.79 | |
1hqs_A | 423 | Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tri | 97.59 | |
2d4v_A | 429 | Isocitrate dehydrogenase; alpha and beta protein, isoci | 96.89 | |
2iv0_A | 412 | Isocitrate dehydrogenase; oxidoreductase, tricarboxylic | 96.78 | |
3dms_A | 427 | Isocitrate dehydrogenase [NADP]; structural genomics, s | 96.67 | |
2qfy_A | 427 | Isocitrate dehydrogenase [NADP]; rossmann fold, oxidore | 95.15 | |
2uxq_A | 402 | Isocitrate dehydrogenase native; psychrophilic, cold ad | 94.48 | |
1zor_A | 399 | Isocitrate dehydrogenase; wild type enzyme, CIS-proline | 91.77 | |
3blx_B | 354 | Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, ox | 97.37 | |
1vlc_A | 366 | 3-isopropylmalate dehydrogenase; TM0556, structural gen | 97.35 | |
3blx_A | 349 | Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, ox | 97.3 | |
1wpw_A | 336 | 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A | 97.2 | |
2d1c_A | 496 | Isocitrate dehydrogenase; structural genomics, NPPSFA, | 97.19 | |
1a05_A | 358 | IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoredu | 97.19 | |
1x0l_A | 333 | Homoisocitrate dehydrogenase; oxidoreductase, decarboxy | 97.13 | |
1v53_A | 366 | 3-isopropylmalate dehydrogenase; IPMDH, HOMO dimer, X-R | 97.06 | |
1cnz_A | 363 | IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); | 97.03 | |
1g2u_A | 345 | IPMDH, 3-isopropylmalate dehydrogenase; beta-barrel, NA | 96.95 | |
3flk_A | 364 | Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, | 96.82 | |
1w0d_A | 337 | 3-isopropylmalate dehydrogenase; oxidoreductase, leucin | 96.8 | |
1tyo_A | 435 | Isocitrate dehydrogenase; enzyme-ethenonadp complex, ox | 96.73 | |
1lwd_A | 413 | Isocitrate dehydrogenase; tricarboxylic acid cycle, oxi | 95.66 |
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD- dependent, metal-binding, NAD, NADP, oxidoreductase, pyridoxine biosynthesis; HET: SUC; 1.70A {Yersinia pestis} PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=877.29 Aligned_cols=327 Identities=35% Similarity=0.574 Sum_probs=311.8 Q ss_pred CCCCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHC-CCCCCCEEEECC Q ss_conf 8888389971898774789999984285232489899993999999999981899744753861011-126785376103 Q gi|254780397|r 2 DEFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAV-SIFKKALPIISS 80 (343) Q Consensus 2 ~k~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~-~~~~~~i~i~~~ 80 (343) ++++||+||+|||+||||||++|+|++. ..++++++||+++++++++.+++++++..++..++. ....+.++++++ T Consensus 6 ~~~~rIaIT~GDPaGIGpEIilk~~~~~---~~~~~iiigd~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~~l~v~~~ 82 (334) T 3lxy_A 6 NHNNRLVITPGEPAGVGPDLAITLAQQD---WPVELVVCADPALLLARASQLNLPLQLREYQADQPAIAQQAGSLTILPV 82 (334) T ss_dssp CCCSEEEEECCCTTSSHHHHHHHHTTSC---CSSEEEEEECHHHHHHHHHHTTCCCEEEECCTTSCCCCCCTTEEEEEEC T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHCC---CCCCEEEEECHHHHHHHHHHCCCCCEEEEECCCCHHHCCCCCCEEEECC T ss_conf 6999589975887541799999997167---9998699989999999999759996178847851322146783354001 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCC Q ss_conf 33220013553100000246778877664301234304432234477764101325647899998342358866521123 Q gi|254780397|r 81 PCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMML 160 (343) Q Consensus 81 ~~~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Mll 160 (343) +...++.+|+++.++|+++++||+.|+++|++|+++||||+||||++|+.+|++|+|||||||++++.+ +++||| T Consensus 83 ~~~~~~~~G~~~~~~g~~~~~~l~~A~~~~~~g~~daiVT~PInK~~i~~aG~~f~GHTE~la~~~~~~-----~~~Mml 157 (334) T 3lxy_A 83 KTAVNVVPGKLDVGNSHYVVETLAKACDGAISGEFAALVTGPVQKSIINDAGIPFIGHTEFFADRSHCQ-----RVVMML 157 (334) T ss_dssp CCSSCCCTTCCCGGGHHHHHHHHHHHHHHHHHTSSSCEEECCCCHHHHHHTTCCCSCHHHHHHHHHTCS-----CCEEEE T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCEEEEEECCCCC-----CCHHHE T ss_conf 235657889757323389999999999885324104899776125667643888587345653002788-----701103 Q ss_pred CCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 32211266530453133343201024567888989999985313456707999636654453100001210244588864 Q gi|254780397|r 161 SGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYL 240 (343) Q Consensus 161 ~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~ 240 (343) ++++|||+|+|+|||||+|++.||+++|.+++++++++|+++||+++||||||||||||||+|+||+||+++|.|||+++ T Consensus 158 ~~~~LrV~lvTtHIpLk~V~~~It~~~I~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHAGE~G~~G~EE~~iI~Pai~~~ 237 (334) T 3lxy_A 158 ATEELRVALATTHLPLLAVPGAITQASLHEVITILDNDLKTKFGITQPQIYVCGLNPHAGEGGHMGHEEIDTIIPALNTL 237 (334) T ss_dssp EETTEEEEESSCSCCGGGHHHHCCHHHHHHHHHHHHHHHHHTSCCSSCCEEEECSSGGGGGGGTTCSHHHHTHHHHHHHH T ss_pred EECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 21672799980675088876424177899999999999998449976648997038986323653057889899999999 Q ss_pred HHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHH Q ss_conf 21587643455511210002236676899985120225555414477279992087647558875522213368668389 Q gi|254780397|r 241 RNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEES 320 (343) Q Consensus 241 ~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s 320 (343) |++|++++|||||||+|.++.+++||+||||||||||||||+++|++|||+|+|||||||||||||||||||||+||++| T Consensus 238 ~~~gi~v~GP~paDt~F~~~~~~~~D~vvamYHDQglip~K~l~f~~~VnvtlGLp~iRtSpdHGTA~dIagkg~A~~~s 317 (334) T 3lxy_A 238 RQQGINLIGPLPADTLFQPKYLQHADAVLAMYHDQGLPVLKYQGFGRAVNITLGLPFIRTSVDHGTALELAATGTADVGS 317 (334) T ss_dssp HHTTCCEEEEECHHHHTSHHHHTTCSEEEESSHHHHHHHHHHHHTTCCEEEEESSSSCEEEESSCCCGGGTTTTCSCCHH T ss_pred HHCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCHHHHHCCCCCCEEEECCCCEEEECCCCCCHHHHHCCCCCCHHH T ss_conf 86499867884807886540015799999776465204342215776679973899568789987166661789899799 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999998520 Q gi|254780397|r 321 LVSALKIAAQLGYQKN 336 (343) Q Consensus 321 ~~~ai~~a~~~~~~~~ 336 (343) |++||++|.+|++||+ T Consensus 318 ~~~Ai~~a~~~~~~r~ 333 (334) T 3lxy_A 318 FITALNLAIKMINNSN 333 (334) T ss_dssp HHHHHHHHHHHHHHC- T ss_pred HHHHHHHHHHHHHHCC T ss_conf 9999999999997437 |
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural genomics, PSI; 2.01A {Pseudomonas aeruginosa} | Back alignment and structure |
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>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural genomics, PSI-2; 2.30A {Salmonella typhimurium LT2} | Back alignment and structure |
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>1td9_A Phosphate acetyltransferase; structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.75A {Bacillus subtilis} SCOP: c.77.1.5 PDB: 1xco_A | Back alignment and structure |
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>1vmi_A Putative phosphate acetyltransferase; NP_416953.1, structural genomics, JCSG, protein structure initiative, PSI; 2.32A {Escherichia coli} SCOP: c.77.1.5 | Back alignment and structure |
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>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound PER monomer, acyltransferase; HET: COA; 2.15A {Methanosarcina thermophila} SCOP: c.77.1.5 PDB: 1qzt_A* 2af3_C* | Back alignment and structure |
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>1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like nucleotide-binding fold, structural genomics, BSGC structure funded by NIH; 2.70A {Streptococcus pyogenes} SCOP: c.77.1.5 | Back alignment and structure |
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>1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, enterococcus faecalis V583, PSI, protein structure initiative; HET: MSE; 2.26A {Enterococcus faecalis} SCOP: c.77.1.4 | Back alignment and structure |
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>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, unknown function; HET: MSE; 2.95A {Bacillus subtilis} SCOP: c.77.1.4 | Back alignment and structure |
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>1yco_A Branched-chain phosphotransacylase; structural genomics, protein structure initiative, PSI, PTB, nysgxrc; 2.40A {Enterococcus faecalis V583} | Back alignment and structure |
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>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* | Back alignment and structure |
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>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 | Back alignment and structure |
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>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} | Back alignment and structure |
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>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} | Back alignment and structure |
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>3dms_A Isocitrate dehydrogenase [NADP]; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia pseudomallei} PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ... | Back alignment and structure |
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>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* | Back alignment and structure |
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>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* | Back alignment and structure |
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>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima MSB8} | Back alignment and structure |
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>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B | Back alignment and structure |
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>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1 | Back alignment and structure |
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>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* | Back alignment and structure |
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>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 | Back alignment and structure |
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>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus HB8} | Back alignment and structure |
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>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1 | Back alignment and structure |
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>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosynthesis; 1.85A {Thermus thermophilus} | Back alignment and structure |
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>1v53_A 3-isopropylmalate dehydrogenase; IPMDH, HOMO dimer, X-RAY analysis, oxidoreductase; 2.85A {Bacillus coagulans} SCOP: c.77.1.1 PDB: 2ayq_A 1v5b_A | Back alignment and structure |
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>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A | Back alignment and structure |
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>1g2u_A IPMDH, 3-isopropylmalate dehydrogenase; beta-barrel, NAD binding, oxidoreductase; 2.10A {Thermus thermophilus HB8} SCOP: c.77.1.1 PDB: 1osj_A 1gc8_A 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1gc9_A 1ipd_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A | Back alignment and structure |
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>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* | Back alignment and structure |
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>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, structural genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A | Back alignment and structure |
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>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* | Back alignment and structure |
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>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3inm_A* 2cmj_A* 2cmv_A* | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
343 | 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatu | |||
d1ptma_ | 329 | c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogen | 2e-56 |
>d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase PdxA {Escherichia coli [TaxId: 562]} Length = 329 | Back information, alignment and structure |
---|
class: Alpha and beta proteins (a/b) fold: Isocitrate/Isopropylmalate dehydrogenase-like superfamily: Isocitrate/Isopropylmalate dehydrogenase-like family: PdxA-like domain: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA species: Escherichia coli [TaxId: 562] Score = 213 bits (543), Expect = 2e-56 Identities = 108/332 (32%), Positives = 165/332 (49%), Gaps = 9/332 (2%) Query: 1 MDEFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLY 60 M + +++T G+PAGIGPD+ ++ + D +L RA L L + L Sbjct: 1 MVKTQRVVITPGEPAGIGPDLVVQLAQREWPV---ELVVCADATLLTNRAAMLGLPLTLR 57 Query: 61 ETDCKN-AVSIFKKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIV 119 + A L ++ A + G + + + +A L+G+ A++ Sbjct: 58 PYSPNSPAQPQTAGTLTLLPVALRAPVTAGQLAVENGHYVVETLARACDGCLNGEFAALI 117 Query: 120 TNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADI 179 T P+ K ++ F GHTEF + K VMML+ +LR T H+P+ DI Sbjct: 118 TGPVHKGVINDAGIPFTGHTEF-----FEERSQAKKVVMMLATEELRVALATTHLPLRDI 172 Query: 180 CRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITY 239 ++ + E +++ ++ FGI PRI + GLNPHAGE +G EE + IIP + Sbjct: 173 ADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPVLNE 232 Query: 240 LRNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVR 299 LR + GPLPAD++F D + MYHDQ L +K F + VNITLGLPF+R Sbjct: 233 LRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIR 292 Query: 300 TSPDHGTAFDIAGSSLTQEESLVSALKIAAQL 331 TS DHGTA ++AG S ++AL +A ++ Sbjct: 293 TSVDHGTALELAGRGKADVGSFITALNLAIKM 324 |
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 343 | 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatu | ||
d1ptma_ | 329 | 4-hydroxythreonine-4-phosphate dehydrogenase PdxA {Esch | 100.0 | |
d1xcoa_ | 324 | Phosphotransacetylase Pta {Bacillus subtilis [TaxId: 14 | 99.08 | |
d2af4c1 | 332 | Phosphotransacetylase Pta {Methanosarcina thermophila [ | 99.02 | |
d1r5ja_ | 329 | Phosphotransacetylase Pta {Streptococcus pyogenes [TaxI | 98.94 | |
d1vmia_ | 329 | Ethanolamine utilization protein EutD {Escherichia coli | 98.91 | |
d1vi1a_ | 334 | Fatty acid/phospholipid synthesis protein PlsX {Bacillu | 98.49 | |
d1u7na_ | 329 | Fatty acid/phospholipid synthesis protein PlsX {Enteroc | 98.1 | |
d1pb1a_ | 416 | Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId | 97.6 | |
d1hqsa_ | 423 | Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxI | 97.36 | |
d1t0la_ | 414 | NADP-dependent isocitrate dehydrogenase {Human (Homo sa | 97.03 | |
d1lwda_ | 413 | NADP-dependent isocitrate dehydrogenase {Pig (Sus scrof | 93.57 | |
d1vlca_ | 362 | 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga mari | 97.47 | |
d1wpwa_ | 336 | 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus toko | 97.44 | |
d1cnza_ | 363 | 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typh | 97.4 | |
d1w0da_ | 337 | 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium t | 96.97 | |
d1g2ua_ | 345 | 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermop | 96.85 | |
d1v53a1 | 356 | 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagul | 96.74 | |
d1a05a_ | 357 | 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus fe | 96.64 |
>d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase PdxA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Isocitrate/Isopropylmalate dehydrogenase-like superfamily: Isocitrate/Isopropylmalate dehydrogenase-like family: PdxA-like domain: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA species: Escherichia coli [TaxId: 562] Probab=100.00 E-value=0 Score=879.81 Aligned_cols=328 Identities=33% Similarity=0.547 Sum_probs=313.6 Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCC-CCCCCEEEEC Q ss_conf 988883899718987747899999842852324898999939999999999818997447538610111-2678537610 Q gi|254780397|r 1 MDEFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVS-IFKKALPIIS 79 (343) Q Consensus 1 M~k~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~-~~~~~i~i~~ 79 (343) |.|.+||+||+|||+||||||++|+|++. ..+++++|||+++++++++.++++++++.++..++.. ...+.+++++ T Consensus 1 M~k~krIaIT~GDPaGIGPEIilK~~~~~---~~~~~ivigd~~~l~~~~~~l~~~~~i~~i~~~~~~~~~~~~~l~i~~ 77 (329) T d1ptma_ 1 MVKTQRVVITPGEPAGIGPDLVVQLAQRE---WPVELVVCADATLLTNRAAMLGLPLTLRPYSPNSPAQPQTAGTLTLLP 77 (329) T ss_dssp CCCCCEEEEECCSTTSSHHHHHHHHTTSC---CSSEEEEEECHHHHHHHHHHTTCCCEEEECCTTSCCCCCCTTEEEEEE T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHC---CCCCEEEEECHHHHHHHHHHCCCCCEEEECCCCHHHHHCCCCCCCCCC T ss_conf 99998699982786074899999998516---899879998999999999984999627886872232001254312354 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 33322001355310000024677887766430123430443223447776410132564789999834235886652112 Q gi|254780397|r 80 SPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMM 159 (343) Q Consensus 80 ~~~~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Ml 159 (343) .+...++++|++++++|+++++||+.|+++|++|+++||||+||||++|+.+|++|+||||||+++++.+ +++|| T Consensus 78 ~~~~~~~~~G~~~~~~g~~a~~~l~~A~~~~~~g~~~alVT~PInK~~i~~ag~~f~GHTE~La~~~~~~-----~~~Mm 152 (329) T d1ptma_ 78 VALRAPVTAGQLAVENGHYVVETLARACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAK-----KVVMM 152 (329) T ss_dssp CCCSSCCBTTBCCTTHHHHHHHHHHHHHHHHHHTSCSEEEECCCCHHHHHHTTCCCCCHHHHHHHHTTCS-----CCEEE T ss_pred CHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHCCCCCCEEEEEHHCCCCCC-----CHHHH T ss_conf 0000122334432100037899999999998638765143174044555313776431541000022355-----26888 Q ss_pred CCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 33221126653045313334320102456788898999998531345670799963665445310000121024458886 Q gi|254780397|r 160 LSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITY 239 (343) Q Consensus 160 l~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~ 239 (343) |++++|||+|+|||||||+|++.||+++|.+++++++++|+++||+++||||||||||||||+|+||+||+++|.|||++ T Consensus 153 l~~~~L~V~~vTtHipLk~V~~~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHaGE~G~~G~EE~~ii~Pai~~ 232 (329) T d1ptma_ 153 LATEELRVALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPVLNE 232 (329) T ss_dssp EESSSCEEEESSCSSCGGGHHHHCCHHHHHHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGGGTTCSHHHHTHHHHHHH T ss_pred HHHHHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 77644200110112025555542106889999999999999851985400257511654220011014556778889999 Q ss_pred HHHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHH Q ss_conf 42158764345551121000223667689998512022555541447727999208764755887552221336866838 Q gi|254780397|r 240 LRNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEE 319 (343) Q Consensus 240 ~~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~ 319 (343) +|++|++++|||||||+|.++++++||+||||||||||||||+++|++|||+|+||||+||||||||||||||||+||+. T Consensus 233 ~~~~gi~v~GP~paDt~F~~~~~~~~D~vvamYHDQglip~K~~~f~~~vn~tlGLp~irtSpdHGTA~dIagk~~A~~~ 312 (329) T d1ptma_ 233 LRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGRGKADVG 312 (329) T ss_dssp HHHTTCEEEEEECHHHHSSHHHHTTCSEEEESSHHHHHHHHHTTCSSSCEEEEESSSSEEEECSSCCCGGGTTSSCCCCH T ss_pred HHHCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCHHHHHCCCCCEEEEECCCCCEEECCCCCCHHHHCCCCCCCHH T ss_conf 98669554799886024545422774189886243100555541456407984389912768998722434378989969 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999999998520 Q gi|254780397|r 320 SLVSALKIAAQLGYQKN 336 (343) Q Consensus 320 s~~~ai~~a~~~~~~~~ 336 (343) ||++|+++|.+|++||+ T Consensus 313 s~~~ai~~a~~~~~~~~ 329 (329) T d1ptma_ 313 SFITALNLAIKMIVNTQ 329 (329) T ss_dssp HHHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHCCC T ss_conf 99999999999986179 |
>d1xcoa_ c.77.1.5 (A:) Phosphotransacetylase Pta {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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>d2af4c1 c.77.1.5 (C:2-333) Phosphotransacetylase Pta {Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
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>d1r5ja_ c.77.1.5 (A:) Phosphotransacetylase Pta {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
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>d1vmia_ c.77.1.5 (A:) Ethanolamine utilization protein EutD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1vi1a_ c.77.1.4 (A:) Fatty acid/phospholipid synthesis protein PlsX {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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>d1u7na_ c.77.1.4 (A:) Fatty acid/phospholipid synthesis protein PlsX {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
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>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
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>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
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>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
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>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} | Back information, alignment and structure |
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>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 343 | 4-hydroxythreonine-4-phosphate dehydrogenase [Cand | ||
1ptm_A_ | 329 | (A:) 4-hydroxythreonine-4-phosphate dehydrogenase; | 2e-96 | |
2hi1_A_ | 330 | (A:) 4-hydroxythreonine-4-phosphate dehydrogenase | 4e-96 | |
1yxo_A_ | 328 | (A:) 4-hydroxythreonine-4-phosphate dehydrogenase | 4e-95 |
>1ptm_A (A:) 4-hydroxythreonine-4-phosphate dehydrogenase; crystal strucrure, PDXA, pyridoxal 5'-phosphate biosynthesis, PLP; 1.96A {Escherichia coli}Length = 329 | Back alignment and structure |
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Score = 347 bits (891), Expect = 2e-96 Identities = 105/332 (31%), Positives = 160/332 (48%), Gaps = 9/332 (2%) Query: 6 PLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCK 65 +++T G+PAGIGPD+ ++ + D +L RA L L + L Sbjct: 6 RVVITPGEPAGIGPDLVVQLAQREWP---VELVVCADATLLTNRAAXLGLPLTLRPYSPN 62 Query: 66 N-AVSIFKKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIA 124 + A L ++ A + G + + + +A L+G+ A++T P+ Sbjct: 63 SPAQPQTAGTLTLLPVALRAPVTAGQLAVENGHYVVETLARACDGCLNGEFAALITGPVH 122 Query: 125 KFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRILS 184 K ++ F GHTEF E ++ K V L+ +LR T H+P+ DI ++ Sbjct: 123 KGVINDAGIPFTGHTEFFEERSQ-----AKKVVXXLATEELRVALATTHLPLRDIADAIT 177 Query: 185 TKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDN 244 + E +++ ++ FGI PRI + GLNPHAGE G EE + IIP + LR Sbjct: 178 PALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHXGTEEIDTIIPVLNELRAQG 237 Query: 245 KNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDH 304 + GPLPAD++F D + YHDQ L +K F + VNITLGLPF+RTS DH Sbjct: 238 XKLNGPLPADTLFQPKYLDNADAVLAXYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDH 297 Query: 305 GTAFDIAGSSLTQEESLVSALKIAAQLGYQKN 336 GTA ++AG S ++AL +A + Sbjct: 298 GTALELAGRGKADVGSFITALNLAIKXIVNTQ 329 |
>2hi1_A (A:) 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural genomics, PSI-2; 2.30A {Salmonella typhimurium LT2}Length = 330 | Back alignment and structure |
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>1yxo_A (A:) 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural genomics, PSI; 2.01A {Pseudomonas aeruginosa}Length = 328 | Back alignment and structure |
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Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 343 | 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatu | ||
1ptm_A_ | 329 | 4-hydroxythreonine-4-phosphate dehydrogenase; crys | 100.0 | |
1yxo_A_ | 328 | 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA | 100.0 | |
2hi1_A_ | 330 | 4-hydroxythreonine-4-phosphate dehydrogenase 2; py | 100.0 | |
1vi1_A_ | 345 | Fatty acid/phospholipid synthesis protein PLSX; st | 98.81 | |
1hqs_A_ | 423 | Isocitrate dehydrogenase; glyoxylate bypass, bsidh | 97.2 | |
2iv0_A_ | 412 | Isocitrate dehydrogenase; oxidoreductase, tricarbo | 97.03 | |
2e0c_A_ | 409 | 409AA long hypothetical NADP-dependent isocitrate | 96.93 | |
1tyo_A_ | 435 | Isocitrate dehydrogenase; enzyme-ethenonadp comple | 96.7 | |
2qfy_A_1-153_201-427 | 380 | Isocitrate dehydrogenase [NADP]; rossmann fold, ox | 96.09 | |
1zor_A_1-104_283-399 | 221 | Isocitrate dehydrogenase; wild type enzyme, CIS-pr | 91.47 | |
2d4v_A_ | 429 | Isocitrate dehydrogenase; alpha and beta protein, | 97.07 | |
3flk_A_ | 364 | Tartrate dehydrogenase/decarboxylase; cytoplasm, l | 97.05 | |
3dms_A_ | 427 | Isocitrate dehydrogenase [NADP]; structural genomi | 96.91 | |
1a05_A_ | 358 | IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxid | 96.78 | |
1cnz_A_ | 363 | IPMDH, IMDH, protein (3-isopropylmalate dehydrogen | 96.47 | |
1x0l_A_ | 333 | Homoisocitrate dehydrogenase; oxidoreductase, deca | 96.39 | |
1w0d_A_ | 337 | 3-isopropylmalate dehydrogenase; oxidoreductase, l | 96.39 | |
2d1c_A_1-370 | 370 | Isocitrate dehydrogenase; structural genomics, NPP | 96.36 | |
3blx_B_ | 354 | Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl | 96.25 | |
1v53_A_ | 366 | 3-isopropylmalate dehydrogenase; IPMDH, HOMO dimer | 96.18 | |
1g2u_A_ | 345 | IPMDH, 3-isopropylmalate dehydrogenase; beta-barre | 96.15 | |
3blx_A_ | 349 | Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl | 96.1 | |
1vlc_A_ | 366 | 3-isopropylmalate dehydrogenase; TM0556, structura | 95.79 | |
1wpw_A_ | 336 | 3-isopropylmalate dehydrogenase; oxidoreductase; 2 | 95.72 | |
2uxq_A_1-137_182-402 | 358 | Isocitrate dehydrogenase native; psychrophilic, co | 93.93 | |
1lwd_A_1-139_185-413 | 368 | Isocitrate dehydrogenase; tricarboxylic acid cycle | 93.73 | |
1yco_A_95-246 | 152 | Branched-chain phosphotransacylase; structural gen | 97.03 | |
1r5j_A_153-306 | 154 | Putative phosphotransacetylase; lactate dehydrogen | 96.55 | |
1vmi_A_1-23_155-309 | 178 | Putative phosphate acetyltransferase; NP_416953.1, | 96.32 | |
2af4_C_144-302 | 159 | Phosphate acetyltransferase; PTA dimer with one CO | 96.28 | |
1td9_A_151-302 | 152 | Phosphate acetyltransferase; structural genomics, | 95.96 | |
1u7n_A_120-228 | 109 | Fatty acid/phospholipid synthesis protein PLSX; st | 90.79 | |
1u7n_A_1-119_283-336 | 173 | Fatty acid/phospholipid synthesis protein PLSX; st | 95.85 | |
1td9_A_1-150_303-329 | 177 | Phosphate acetyltransferase; structural genomics, | 95.52 | |
1r5j_A_1-152_307-337 | 183 | Putative phosphotransacetylase; lactate dehydrogen | 95.43 | |
1vmi_A_24-154_310-355 | 177 | Putative phosphate acetyltransferase; NP_416953.1, | 95.38 | |
2af4_C_1-143_303-333 | 174 | Phosphate acetyltransferase; PTA dimer with one CO | 94.53 |
>1ptm_A (A:) 4-hydroxythreonine-4-phosphate dehydrogenase; crystal strucrure, PDXA, pyridoxal 5'-phosphate biosynthesis, PLP; 1.96A {Escherichia coli} | Back alignment and structure |
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Probab=100.00 E-value=0 Score=874.31 Aligned_cols=327 Identities=32% Similarity=0.533 Sum_probs=316.3 Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCC-CCCEEEEC Q ss_conf 98888389971898774789999984285232489899993999999999981899744753861011126-78537610 Q gi|254780397|r 1 MDEFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIF-KKALPIIS 79 (343) Q Consensus 1 M~k~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~-~~~i~i~~ 79 (343) |++ ++|+||+|||+||||||++|+|++. +.|++|+|||.++|+++++.++++++++.++..++.+.. .+.+++++ T Consensus 2 M~k-~~IaIT~GDPaGIGPEIi~kal~~~---~~~~~viiGd~~vl~~~~~~lg~~~~~~~i~~~~~~~~~~~~~i~v~~ 77 (329) T 1ptm_A 2 VKT-QRVVITPGEPAGIGPDLVVQLAQRE---WPVELVVCADATLLTNRAAXLGLPLTLRPYSPNSPAQPQTAGTLTLLP 77 (329) T ss_dssp CCC-CEEEEECCSTTSSHHHHHHHHTTSC---CSSEEEEEECHHHHHHHHHHTTCCCEEEECCTTSCCCCCCTTEEEEEE T ss_pred CCC-CEEEEECCCCCHHHHHHHHHHHHCC---CCCCEEEEECHHHHHHHHHHCCCCCEEEECCCCCHHCCCCCCCEEEEC T ss_conf 989-8599973785073799999998217---899879998999999999984999627885884110314478037621 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 33322001355310000024677887766430123430443223447776410132564789999834235886652112 Q gi|254780397|r 80 SPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMM 159 (343) Q Consensus 80 ~~~~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Ml 159 (343) .+...++++|++|+++|+++++|+++|+++|++|++|||||+||||++|+.+|++|+||||||+++++.+ +++|| T Consensus 78 ~~~~~~i~~G~~s~~~G~aa~~~i~~A~~~~~~g~~daiVT~PI~K~a~~~aG~~f~GHTE~la~~~~~~-----~~~mm 152 (329) T 1ptm_A 78 VALRAPVTAGQLAVENGHYVVETLARACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAK-----KVVXX 152 (329) T ss_dssp CCCSSCCBTTBCCTTHHHHHHHHHHHHHHHHHHTSCSEEEECCCCHHHHHHTTCCCCCHHHHHHHHTTCS-----CCEEE T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCHHHHHHHCCCCC-----CCEEE T ss_conf 2134676767651346999999999999998438643798477357778855887477106655301578-----72245 Q ss_pred CCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 33221126653045313334320102456788898999998531345670799963665445310000121024458886 Q gi|254780397|r 160 LSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITY 239 (343) Q Consensus 160 l~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~ 239 (343) |.+++|||+++|+||||++|++.||+++|.+++++++++|+++||+++||||||||||||||+|+||+||+++|.|||++ T Consensus 153 l~~~~Lrv~l~T~HipL~~V~~~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHAGe~G~~G~EE~~ii~Pai~~ 232 (329) T 1ptm_A 153 LATEELRVALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHXGTEEIDTIIPVLNE 232 (329) T ss_dssp EESSSCEEEESSCSSCGGGHHHHCCHHHHHHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGGGTTCSHHHHTHHHHHHH T ss_pred EEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 55257489995444778999998769999999999999999852998871799614898532466651336659999999 Q ss_pred HHHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHH Q ss_conf 42158764345551121000223667689998512022555541447727999208764755887552221336866838 Q gi|254780397|r 240 LRNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEE 319 (343) Q Consensus 240 ~~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~ 319 (343) +|++|++++||+||||+|.+..+++||+||||||||||||||+++|++|||+|+|||||||||||||||||||||+||++ T Consensus 233 ~~~~g~~v~GP~paDt~F~~~~~~~~D~vvaMYHDQglip~K~l~f~~gVnvTlGLP~iRTS~DHGTAfdIAGkg~A~~~ 312 (329) T 1ptm_A 233 LRAQGXKLNGPLPADTLFQPKYLDNADAVLAXYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGRGKADVG 312 (329) T ss_dssp HHHTTCEEEEEECHHHHSSHHHHTTCSEEEESSHHHHHHHHHTTCSSSCEEEEESSSSEEEECSSCCCGGGTTSSCCCCH T ss_pred HHHCCCCCCCCCCCCHHHHHHCCCCCCEEEECCHHCCCHHHHEECCCCCEEEECCCCEEEECCCCCCHHHHCCCCCCCHH T ss_conf 98769877899894155654202589889971410044032010467527995489955778998616665078889869 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999999998520 Q gi|254780397|r 320 SLVSALKIAAQLGYQKN 336 (343) Q Consensus 320 s~~~ai~~a~~~~~~~~ 336 (343) ||++||++|++|++||+ T Consensus 313 S~~~Ai~lA~~la~~r~ 329 (329) T 1ptm_A 313 SFITALNLAIKXIVNTQ 329 (329) T ss_dssp HHHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHCCC T ss_conf 99999999999986279 |
>1yxo_A (A:) 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural genomics, PSI; 2.01A {Pseudomonas aeruginosa} | Back alignment and structure |
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>2hi1_A (A:) 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural genomics, PSI-2; 2.30A {Salmonella typhimurium LT2} | Back alignment and structure |
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>1vi1_A (A:) Fatty acid/phospholipid synthesis protein PLSX; structural genomics, unknown function; HET: MSE; 2.95A {Bacillus subtilis} | Back alignment and structure |
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>1hqs_A (A:) Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} | Back alignment and structure |
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>2iv0_A (A:) Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} | Back alignment and structure |
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