HHsearch alignment for GI: 254780397 and conserved domain: TIGR02088

>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases; InterPro: IPR011828 This entry represents a group of archaeal decarboxylating dehydrogenases which include the leucine biosynthesis enzyme 3-isopropylmalate dehydrogenase (LeuB, LEU3) and the methanogenic cofactor CoB biosynthesis enzyme isohomocitrate dehydrogenase (AksF). Both of these have been characterised in Methanococcus janaschii . Sequences from the non-methanogenic archaea are also represented in this entry, presumably LeuB, although phylogenetic trees cannot establish which gene is which in the methanogens.; GO: 0003862 3-isopropylmalate dehydrogenase activity, 0051287 NAD binding, 0009098 leucine biosynthetic process.
Probab=98.13  E-value=1.5e-06  Score=59.81  Aligned_cols=135  Identities=19%  Similarity=0.225  Sum_probs=78.6

Q ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-EECCCCCCCCCCCCCCCHHHHHHHHHH-HHCC-CCCCCCCCCHH
Q ss_conf             43201024567888989999985313456707999-636654453100001210244588864-2158-76434555112
Q gi|254780397|r  179 ICRILSTKRIIETSDTVYNAMKKYFGINNPRIAIS-GLNPHAGENATIGIEEKNIIIPAITYL-RNDN-KNIIGPLPADS  255 (343)
Q Consensus       179 V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~-gLNPHAGE~G~~G~EE~~iI~PaI~~~-~~~g-~~v~GP~paDt  255 (343)
T Consensus       152 a~RViTr~gSeRIa~~A~~lAk~r---~rKKvT~vHKANVlk~tdgLF--------~~V~rEi~~~~g~ve~~-d~~vDs  219 (350)
T TIGR02088       152 AIRVITRKGSERIARFAFELAKKR---NRKKVTCVHKANVLKVTDGLF--------LEVCREIAKSYGEVEYE-DYLVDS  219 (350)
T ss_pred             EEEEECHHHHHHHHHHHHHHHHHH---CCCEEEEEECCCCCCCCCCHH--------HHHHHHHHCCCCCEEHH-HHHHHH
T ss_conf             645102464399999999999860---794078997233423356315--------99999985179964132-288999


Q ss_pred             HEECCCC--CCCCEEEE--EECCH------------HHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHH
Q ss_conf             1000223--66768999--85120------------22555541447727999208764755887552221336866838
Q gi|254780397|r  256 MFHHSAR--QCYDVAIC--MYHDQ------------ALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEE  319 (343)
Q Consensus       256 ~F~~~~~--~~~D~vla--mYHDQ------------glip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~  319 (343)
T Consensus       220 ~a~~Lv~~P~~fDVIVTtNmFGDIlSD~A~~l~GsLGLaPS--------ANi--Gd~~AlFEPVHGsApDIAGKGIANP~  289 (350)
T TIGR02088       220 AAMNLVKDPEKFDVIVTTNMFGDILSDLAAALVGSLGLAPS--------ANI--GDRKALFEPVHGSAPDIAGKGIANPT  289 (350)
T ss_pred             HHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCC--------CCC--CCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             99985238630676786234524188999998502213676--------521--04523357767776563664102378


Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999999999852
Q gi|254780397|r  320 SLVSALKIAAQLGYQK  335 (343)
Q Consensus       320 s~~~ai~~a~~~~~~~  335 (343)
T Consensus       290 A~ILs~~MmL~~~G~~  305 (350)
T TIGR02088       290 AAILSVAMMLDYLGEL  305 (350)
T ss_pred             HHHHHHHHHHHHHCCC
T ss_conf             9999999999861110