HHsearch alignment for GI: 254780397 and conserved domain: TIGR02088
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases; InterPro: IPR011828 This entry represents a group of archaeal decarboxylating dehydrogenases which include the leucine biosynthesis enzyme 3-isopropylmalate dehydrogenase (LeuB, LEU3) and the methanogenic cofactor CoB biosynthesis enzyme isohomocitrate dehydrogenase (AksF). Both of these have been characterised in Methanococcus janaschii . Sequences from the non-methanogenic archaea are also represented in this entry, presumably LeuB, although phylogenetic trees cannot establish which gene is which in the methanogens.; GO: 0003862 3-isopropylmalate dehydrogenase activity, 0051287 NAD binding, 0009098 leucine biosynthetic process.
Probab=98.13 E-value=1.5e-06 Score=59.81 Aligned_cols=135 Identities=19% Similarity=0.225 Sum_probs=78.6
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-EECCCCCCCCCCCCCCCHHHHHHHHHH-HHCC-CCCCCCCCCHH
Q ss_conf 43201024567888989999985313456707999-636654453100001210244588864-2158-76434555112
Q gi|254780397|r 179 ICRILSTKRIIETSDTVYNAMKKYFGINNPRIAIS-GLNPHAGENATIGIEEKNIIIPAITYL-RNDN-KNIIGPLPADS 255 (343)
Q Consensus 179 V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~-gLNPHAGE~G~~G~EE~~iI~PaI~~~-~~~g-~~v~GP~paDt 255 (343)
T Consensus 152 a~RViTr~gSeRIa~~A~~lAk~r---~rKKvT~vHKANVlk~tdgLF--------~~V~rEi~~~~g~ve~~-d~~vDs 219 (350)
T TIGR02088 152 AIRVITRKGSERIARFAFELAKKR---NRKKVTCVHKANVLKVTDGLF--------LEVCREIAKSYGEVEYE-DYLVDS 219 (350)
T ss_pred EEEEECHHHHHHHHHHHHHHHHHH---CCCEEEEEECCCCCCCCCCHH--------HHHHHHHHCCCCCEEHH-HHHHHH
T ss_conf 645102464399999999999860---794078997233423356315--------99999985179964132-288999
Q ss_pred HEECCCC--CCCCEEEE--EECCH------------HHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHH
Q ss_conf 1000223--66768999--85120------------22555541447727999208764755887552221336866838
Q gi|254780397|r 256 MFHHSAR--QCYDVAIC--MYHDQ------------ALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEE 319 (343)
Q Consensus 256 ~F~~~~~--~~~D~vla--mYHDQ------------glip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~ 319 (343)
T Consensus 220 ~a~~Lv~~P~~fDVIVTtNmFGDIlSD~A~~l~GsLGLaPS--------ANi--Gd~~AlFEPVHGsApDIAGKGIANP~ 289 (350)
T TIGR02088 220 AAMNLVKDPEKFDVIVTTNMFGDILSDLAAALVGSLGLAPS--------ANI--GDRKALFEPVHGSAPDIAGKGIANPT 289 (350)
T ss_pred HHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCC--------CCC--CCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 99985238630676786234524188999998502213676--------521--04523357767776563664102378
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999852
Q gi|254780397|r 320 SLVSALKIAAQLGYQK 335 (343)
Q Consensus 320 s~~~ai~~a~~~~~~~ 335 (343)
T Consensus 290 A~ILs~~MmL~~~G~~ 305 (350)
T TIGR02088 290 AAILSVAMMLDYLGEL 305 (350)
T ss_pred HHHHHHHHHHHHHCCC
T ss_conf 9999999999861110