Query gi|254780397|ref|YP_003064810.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 343
No_of_seqs 216 out of 2390
Neff 6.9
Searched_HMMs 39220
Date Sun May 29 18:57:53 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780397.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05312 pdxA 4-hydroxythreoni 100.0 0 0 914.2 28.9 335 1-336 1-336 (336)
2 PRK00232 pdxA 4-hydroxythreoni 100.0 0 0 892.9 28.8 330 1-336 1-333 (334)
3 PRK03743 pdxA 4-hydroxythreoni 100.0 0 0 892.8 28.7 331 1-338 1-333 (333)
4 PRK03367 consensus 100.0 0 0 887.5 29.1 328 1-336 1-329 (329)
5 PRK04607 consensus 100.0 0 0 886.1 28.3 327 1-335 2-330 (330)
6 PRK03877 consensus 100.0 0 0 883.0 27.2 325 4-334 1-328 (328)
7 PRK02848 consensus 100.0 0 0 876.4 28.3 331 4-339 6-339 (341)
8 PRK04507 consensus 100.0 0 0 873.9 27.4 323 1-335 1-323 (323)
9 PRK01909 pdxA 4-hydroxythreoni 100.0 0 0 873.7 26.8 323 1-337 1-328 (329)
10 PRK03371 pdxA 4-hydroxythreoni 100.0 0 0 865.1 26.1 322 4-332 2-326 (326)
11 PRK02746 pdxA 4-hydroxythreoni 100.0 0 0 844.1 25.8 316 4-334 1-332 (332)
12 COG1995 PdxA Pyridoxal phospha 100.0 0 0 814.3 27.2 329 1-337 1-331 (332)
13 PRK03946 pdxA 4-hydroxythreoni 100.0 0 0 802.8 25.3 302 4-334 1-304 (304)
14 pfam04166 PdxA Pyridoxal phosp 100.0 0 0 787.2 25.1 297 28-329 2-299 (299)
15 TIGR00557 pdxA 4-hydroxythreon 100.0 0 0 770.3 21.4 320 5-331 2-324 (325)
16 PRK11890 phosphate acetyltrans 99.3 1.8E-09 4.5E-14 77.3 19.3 265 4-337 22-308 (312)
17 pfam01515 PTA_PTB Phosphate ac 99.1 9.6E-09 2.4E-13 72.9 14.4 273 3-303 13-305 (319)
18 PRK05805 phosphate butyryltran 99.0 4.5E-08 1.1E-12 68.9 16.1 263 4-332 17-298 (301)
19 PRK09653 eutD phosphotransacet 99.0 6.4E-08 1.6E-12 68.0 16.2 287 3-333 14-322 (324)
20 PRK07742 phosphate butyryltran 98.9 3.7E-08 9.5E-13 69.4 12.0 260 4-332 15-297 (299)
21 COG0280 Pta Phosphotransacetyl 98.9 1.3E-07 3.4E-12 66.0 13.9 290 4-334 13-325 (327)
22 PRK12861 malic enzyme; Reviewe 98.8 2.1E-07 5.4E-12 64.9 11.5 265 4-298 446-734 (762)
23 PRK07232 malic enzyme; Reviewe 98.7 2.4E-07 6.1E-12 64.5 11.3 251 4-284 440-709 (753)
24 PRK12862 malic enzyme; Reviewe 98.7 3.6E-07 9.2E-12 63.5 10.8 253 4-285 446-716 (761)
25 PRK05331 putative glycerol-3-p 98.7 2.1E-06 5.3E-11 58.9 14.5 268 4-331 1-317 (317)
26 PRK13846 putative glycerol-3-p 98.6 1.5E-05 3.7E-10 53.8 17.2 272 5-336 3-307 (316)
27 pfam02504 FA_synthesis Fatty a 98.6 7.5E-06 1.9E-10 55.5 15.1 273 6-336 2-319 (322)
28 PRK08190 bifunctional enoyl-Co 98.5 6.1E-05 1.6E-09 50.1 17.3 228 32-338 199-463 (465)
29 COG0416 PlsX Fatty acid/phosph 98.3 5.2E-05 1.3E-09 50.5 13.5 272 4-337 1-324 (338)
30 PRK05632 phosphate acetyltrans 98.2 4.6E-05 1.2E-09 50.8 11.2 251 3-284 390-655 (702)
31 TIGR02088 LEU3_arch isopropylm 98.1 1.5E-06 3.7E-11 59.8 2.8 135 179-335 152-305 (350)
32 PRK13845 putative glycerol-3-p 97.7 0.001 2.7E-08 42.7 11.6 253 35-337 124-423 (437)
33 TIGR00182 plsX fatty acid/phos 97.5 0.0033 8.3E-08 39.7 11.2 271 6-335 2-324 (344)
34 TIGR02706 P_butyryltrans phosp 97.3 0.0031 8E-08 39.8 9.2 228 23-329 27-292 (295)
35 PRK08997 isocitrate dehydrogen 97.3 0.00038 9.7E-09 45.3 4.4 138 181-331 142-289 (334)
36 pfam00180 Iso_dh Isocitrate/is 97.2 0.00063 1.6E-08 44.0 5.3 140 181-331 157-305 (349)
37 COG0473 LeuB Isocitrate/isopro 97.0 0.00048 1.2E-08 44.7 3.0 136 180-335 150-304 (348)
38 TIGR03270 methan_mark_4 putati 97.0 0.016 4.1E-07 35.5 10.3 178 104-328 8-202 (202)
39 PRK08194 tartrate dehydrogenas 96.9 0.00084 2.1E-08 43.2 3.1 137 181-331 156-305 (352)
40 PRK06451 isocitrate dehydrogen 96.9 0.00093 2.4E-08 43.0 3.2 77 253-331 278-362 (415)
41 PRK09222 isocitrate dehydrogen 96.8 0.0011 2.8E-08 42.6 3.2 137 181-330 144-290 (482)
42 PRK07362 isocitrate dehydrogen 96.8 0.0011 2.7E-08 42.6 3.1 77 252-330 338-422 (474)
43 PRK00772 3-isopropylmalate deh 96.7 0.0014 3.6E-08 41.9 3.1 137 181-331 157-303 (352)
44 PRK03437 3-isopropylmalate deh 96.6 0.0017 4.4E-08 41.3 3.1 138 181-331 155-304 (345)
45 PRK07006 isocitrate dehydrogen 96.6 0.0018 4.6E-08 41.2 3.2 77 253-331 275-359 (409)
46 TIGR02924 ICDH_alpha isocitrat 96.5 0.0011 2.8E-08 42.5 1.6 22 304-325 260-281 (481)
47 TIGR02089 TTC tartrate dehydro 96.5 0.001 2.6E-08 42.8 1.1 28 301-331 280-307 (355)
48 COG0538 Icd Isocitrate dehydro 95.0 0.047 1.2E-06 32.7 4.7 96 233-330 251-354 (407)
49 KOG0785 consensus 94.0 0.065 1.6E-06 31.9 3.6 136 176-327 168-316 (365)
50 TIGR00169 leuB 3-isopropylmala 93.5 0.067 1.7E-06 31.8 2.9 55 276-333 267-321 (370)
51 TIGR00651 pta phosphate acetyl 91.8 1.1 2.8E-05 24.6 8.7 225 22-262 11-251 (322)
52 PRK09222 isocitrate dehydrogen 91.4 0.19 4.7E-06 29.2 3.0 23 1-25 1-23 (482)
53 TIGR00169 leuB 3-isopropylmala 91.1 0.27 6.8E-06 28.2 3.5 20 6-27 1-20 (370)
54 PRK03437 3-isopropylmalate deh 91.0 0.2 5.1E-06 29.0 2.9 21 1-23 1-21 (345)
55 TIGR00175 mito_nad_idh isocitr 89.3 0.22 5.6E-06 28.7 1.9 152 173-335 137-303 (348)
56 PRK08194 tartrate dehydrogenas 85.7 0.73 1.9E-05 25.6 2.8 22 1-25 1-22 (352)
57 PRK07006 isocitrate dehydrogen 85.5 0.84 2.1E-05 25.2 3.0 25 1-27 16-40 (409)
58 KOG0786 consensus 84.0 0.92 2.4E-05 25.0 2.7 128 182-332 187-314 (363)
59 pfam05014 Nuc_deoxyrib_tr Nucl 77.3 1.4 3.5E-05 24.0 1.7 50 224-273 7-69 (112)
60 PRK13337 putative lipid kinase 73.6 4.6 0.00012 20.8 3.6 22 102-123 107-128 (305)
61 PRK13059 putative lipid kinase 73.0 3.2 8.1E-05 21.7 2.7 25 189-213 155-179 (294)
62 PRK00654 glgA glycogen synthas 72.7 8.1 0.00021 19.3 6.9 75 262-339 365-447 (476)
63 COG4333 Uncharacterized protei 72.2 3.6 9.2E-05 21.4 2.8 102 183-288 12-140 (167)
64 PRK13055 putative lipid kinase 70.6 6.9 0.00018 19.7 3.9 17 102-118 109-125 (334)
65 PRK11914 diacylglycerol kinase 70.3 5.4 0.00014 20.3 3.4 14 103-116 111-124 (304)
66 TIGR01429 AMP_deaminase AMP de 70.1 3.6 9.1E-05 21.4 2.4 79 188-293 425-523 (616)
67 cd03791 GT1_Glycogen_synthase_ 66.2 11 0.00028 18.5 7.3 76 261-339 367-450 (476)
68 COG0394 Wzb Protein-tyrosine-p 64.0 5.7 0.00015 20.2 2.4 42 234-277 48-89 (139)
69 COG1467 PRI1 Eukaryotic-type D 59.7 14 0.00035 17.9 3.7 78 163-241 94-181 (341)
70 COG1597 LCB5 Sphingosine kinas 56.9 5.6 0.00014 20.3 1.4 37 102-138 107-145 (301)
71 pfam12481 DUF3700 Aluminium in 54.5 8.4 0.00021 19.2 2.0 24 226-254 100-123 (123)
72 TIGR01046 S10_Arc_S20_Euk ribo 54.4 8.2 0.00021 19.3 1.9 39 207-254 2-40 (99)
73 cd01910 Wali7 This domain is p 53.6 11 0.00028 18.5 2.4 38 198-258 86-123 (224)
74 pfam07799 DUF1643 Protein of u 53.3 12 0.0003 18.3 2.5 82 199-284 4-112 (135)
75 KOG2430 consensus 52.9 2.3 5.8E-05 22.6 -1.2 22 155-176 278-299 (587)
76 PRK11574 hypothetical protein; 52.5 9.9 0.00025 18.8 2.0 30 112-142 99-134 (196)
77 KOG2899 consensus 50.9 9.3 0.00024 19.0 1.7 47 97-147 151-197 (288)
78 PRK13054 lipid kinase; Reviewe 49.0 21 0.00054 16.8 3.3 17 1-18 1-17 (299)
79 pfam01902 ATP_bind_4 ATP-bindi 48.4 22 0.00057 16.7 9.3 17 108-124 79-95 (219)
80 PRK08125 bifunctional UDP-gluc 46.3 24 0.00062 16.5 4.0 124 9-134 319-467 (660)
81 TIGR01893 aa-his-dipept aminoa 46.2 22 0.00055 16.8 3.0 28 194-226 432-460 (506)
82 PRK13057 putative lipid kinase 46.2 21 0.00053 16.9 2.9 20 193-212 151-170 (287)
83 TIGR02628 fuculo_kin_coli L-fu 44.9 7.4 0.00019 19.5 0.4 46 292-337 229-276 (473)
84 pfam06516 NUP Purine nucleosid 43.9 26 0.00067 16.2 3.8 16 101-116 99-114 (315)
85 KOG3438 consensus 43.9 22 0.00055 16.7 2.7 47 195-242 29-76 (105)
86 PRK10710 DNA-binding transcrip 43.6 27 0.00068 16.2 3.5 32 231-262 199-231 (240)
87 KOG2524 consensus 42.4 26 0.00066 16.3 2.9 33 140-176 124-156 (338)
88 TIGR02294 nickel_nikA nickel A 42.3 22 0.00057 16.7 2.5 75 238-332 373-456 (513)
89 cd03134 GATase1_PfpI_like A ty 38.0 17 0.00044 17.3 1.4 31 112-145 94-128 (165)
90 TIGR01008 rpsC_E_A ribosomal p 37.2 31 0.00078 15.8 2.6 73 132-214 9-84 (204)
91 KOG1116 consensus 36.5 27 0.0007 16.1 2.3 70 204-275 175-247 (579)
92 KOG3107 consensus 36.4 35 0.00088 15.5 3.2 27 105-133 319-345 (468)
93 pfam06962 rRNA_methylase Putat 35.4 23 0.00059 16.6 1.7 35 208-247 86-120 (140)
94 PRK07579 hypothetical protein; 35.2 36 0.00092 15.4 2.7 22 233-257 203-224 (245)
95 KOG4402 consensus 34.1 37 0.00095 15.3 2.6 74 120-206 47-120 (144)
96 cd03169 GATase1_PfpI_1 Type 1 33.7 25 0.00063 16.4 1.7 27 112-141 108-138 (180)
97 pfam10044 Ret_tiss Retinal tis 32.5 39 0.00099 15.2 2.5 63 134-206 18-80 (95)
98 PRK12735 elongation factor Tu; 31.9 41 0.001 15.1 6.7 137 133-276 80-237 (396)
99 PRK09420 cpdB bifunctional 2', 30.2 24 0.0006 16.5 1.1 27 98-124 131-157 (578)
100 PRK13530 arsenate reductase; P 29.9 44 0.0011 14.9 3.1 54 207-274 31-84 (133)
101 pfam05503 Pox_G7 Poxvirus G7-l 29.6 31 0.00079 15.8 1.6 15 287-301 345-359 (363)
102 smart00226 LMWPc Low molecular 29.4 45 0.0012 14.8 4.9 59 207-277 26-84 (140)
103 TIGR01433 CyoA ubiquinol oxida 29.3 22 0.00056 16.7 0.8 18 215-236 19-36 (228)
104 PRK00861 putative lipid kinase 29.1 46 0.0012 14.8 4.0 24 190-213 155-178 (296)
105 COG3199 Predicted inorganic po 28.6 35 0.0009 15.5 1.8 27 213-240 276-302 (355)
106 TIGR01133 murG undecaprenyldip 27.2 49 0.0013 14.6 4.3 200 1-243 2-222 (368)
107 TIGR01110 mdcA malonate decarb 26.9 34 0.00086 15.6 1.4 38 190-240 257-295 (551)
108 TIGR00644 recJ single-stranded 26.1 52 0.0013 14.5 4.0 80 36-123 57-147 (705)
109 COG4002 Predicted phosphotrans 25.8 52 0.0013 14.4 7.6 182 107-333 56-255 (256)
110 TIGR01290 nifB nitrogenase cof 25.5 53 0.0014 14.4 2.3 133 163-327 109-253 (461)
111 TIGR02845 spore_V_AD stage V s 25.4 39 0.001 15.2 1.5 74 97-172 108-184 (331)
112 KOG2195 consensus 24.9 54 0.0014 14.3 3.4 94 84-186 362-463 (702)
113 cd01207 Ena-Vasp Enabled-VASP- 24.9 55 0.0014 14.3 2.8 65 267-331 32-109 (111)
114 cd03794 GT1_wbuB_like This fam 24.5 55 0.0014 14.3 7.3 103 207-329 250-363 (394)
115 pfam05167 DUF711 Uncharacteriz 24.5 55 0.0014 14.3 5.2 43 176-219 208-252 (390)
116 cd03795 GT1_like_4 This family 23.0 59 0.0015 14.1 6.4 102 206-328 217-329 (357)
117 TIGR01747 diampropi_NH3ly diam 22.9 34 0.00088 15.5 0.8 40 8-56 274-313 (378)
118 TIGR02573 LcrG_PcrG type III s 22.7 24 0.00062 16.4 0.0 29 213-242 32-62 (93)
119 KOG2764 consensus 21.6 64 0.0016 13.9 2.5 129 112-269 100-242 (247)
120 TIGR03026 NDP-sugDHase nucleot 21.2 65 0.0016 13.9 7.1 102 174-286 283-395 (411)
121 TIGR01286 nifK nitrogenase mol 21.0 65 0.0017 13.9 2.2 135 38-214 235-374 (526)
122 TIGR01020 rpsE_arch ribosomal 20.7 52 0.0013 14.4 1.4 38 107-144 150-192 (220)
123 pfam11821 DUF3341 Protein of u 20.5 60 0.0015 14.1 1.7 16 39-54 8-23 (173)
124 TIGR01983 UbiG ubiquinone bios 20.2 51 0.0013 14.5 1.3 25 165-193 215-239 (275)
125 TIGR02389 RNA_pol_rpoA2 DNA-di 20.2 23 0.00057 16.6 -0.6 48 102-149 130-177 (397)
No 1
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=0 Score=914.22 Aligned_cols=335 Identities=55% Similarity=0.927 Sum_probs=323.4
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHC-CCCCCCEEEEC
Q ss_conf 98888389971898774789999984285232489899993999999999981899744753861011-12678537610
Q gi|254780397|r 1 MDEFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAV-SIFKKALPIIS 79 (343)
Q Consensus 1 M~k~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~-~~~~~~i~i~~ 79 (343)
|++ +||+||+||||||||||++|+|.+......+++|+|||+++++++++.++.+++++.++..++. ....+.+++++
T Consensus 1 M~~-kpIaIT~GDPaGIGPEIi~Kal~~~~~~~~~~~vviGd~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~~l~v~~ 79 (336)
T PRK05312 1 MMM-RPLALTLGDPAGIGPEIALKAWLARRELGLPPFFLIGDPALLAARARLLGLAVPIAEVSDPAEAAAAFADALPVLP 79 (336)
T ss_pred CCC-CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHCCCCCCEEEECCHHHHHHCCCCEEEEEC
T ss_conf 999-9889973786331699999998614452699989995999999999985999874783887787443588026850
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 33322001355310000024677887766430123430443223447776410132564789999834235886652112
Q gi|254780397|r 80 SPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMM 159 (343)
Q Consensus 80 ~~~~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Ml 159 (343)
.+...++++|++|+++|+++++||+.|+++|++|++|||||+||||++|+.+|++|+|||||||++|+.+.+.+.+++||
T Consensus 80 ~~~~~~~~~G~~s~~~g~~a~~~l~~Ai~~~~~g~idaiVT~PInK~~i~~aG~~f~GHTE~LA~l~g~~~~~~~~~vMm 159 (336)
T PRK05312 80 LPHAAPVTPGKPDPANAAGVIAAIERAVALVLSGAAAAVVTNPIAKKVLYEAGFAFPGHTEFLAELAGVALGKPVQPVMM 159 (336)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 67666778998588999999999999999997499889997875869897357888986999999855444677742688
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 33221126653045313334320102456788898999998531345670799963665445310000121024458886
Q gi|254780397|r 160 LSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITY 239 (343)
Q Consensus 160 l~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~ 239 (343)
|++++|||+|+||||||++|++.||+++|.+++++++++|+++||+++||||||||||||||+|+||+||+++|.|||++
T Consensus 160 l~~~~LrV~l~TtHIpLk~V~~~It~~~I~~~i~l~~~~L~~~fgi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~Pai~~ 239 (336)
T PRK05312 160 LAGPQLRVVPVTIHIPLRDVPAALTTELIVATARITAADLRRRFGIAAPRLAVAGLNPHAGEGGALGREDIDIIAPAIEQ 239 (336)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 61587368885335059999765448999999999999999854988872899970898654566766348889999999
Q ss_pred HHHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHH
Q ss_conf 42158764345551121000223667689998512022555541447727999208764755887552221336866838
Q gi|254780397|r 240 LRNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEE 319 (343)
Q Consensus 240 ~~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~ 319 (343)
+|++|++++|||||||+|.++.+++||+||||||||||||||+++|++|||+|+|||||||||||||||||||||+||++
T Consensus 240 ~~~~gi~v~GP~paDt~F~~~~~~~~D~vlaMYHDQglip~K~l~f~~~vn~tlGLp~iRtS~dHGTA~diAgk~~A~~~ 319 (336)
T PRK05312 240 LRAEGIDARGPLPADTMFHAAARATYDAAICMYHDQALIPIKTLDFDEGVNVTLGLPFIRTSPDHGTAFDIAGKGIARPD 319 (336)
T ss_pred HHHCCCEEECCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCEEEECCCCCEEECCCCCHHHHHHCCCCCCHH
T ss_conf 99789946789896687544450688999983413367978744588747981389910678998704666178989969
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998520
Q gi|254780397|r 320 SLVSALKIAAQLGYQKN 336 (343)
Q Consensus 320 s~~~ai~~a~~~~~~~~ 336 (343)
||++|+++|.+|++||-
T Consensus 320 s~~~Ai~~A~~~~~~r~ 336 (336)
T PRK05312 320 SLIAALRLAAQMAANRA 336 (336)
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 99999999999997159
No 2
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=0 Score=892.95 Aligned_cols=330 Identities=37% Similarity=0.586 Sum_probs=316.1
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHH-CCCCCCCEEEEC
Q ss_conf 9888838997189877478999998428523248989999399999999998189974475386101-112678537610
Q gi|254780397|r 1 MDEFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNA-VSIFKKALPIIS 79 (343)
Q Consensus 1 M~k~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~-~~~~~~~i~i~~ 79 (343)
|..+++|+||+|||+||||||++|+|++.+..+.+++|+|||+++|+++++.++++++++.++..++ .....+.+++++
T Consensus 1 mm~Kp~IaIT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~~~lg~~~~~~~i~~~~~~~~~~~~~i~v~~ 80 (334)
T PRK00232 1 MMMKPRIAITPGDPAGIGPELIAKLLAQPDVRWPAHLVVIADRALLEERAAILGLPLDLRPYSPDAPAAPQAAGTLTLLD 80 (334)
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHCCCCCCEEEECCHHHHHHCCCCCCEEEE
T ss_conf 99998289968886353899999998481304898889998899999999985999706873774554434589825985
Q ss_pred CCC--CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 333--220013553100000246778877664301234304432234477764101325647899998342358866521
Q gi|254780397|r 80 SPC--GAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPV 157 (343)
Q Consensus 80 ~~~--~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~ 157 (343)
++. ..++++|++|+++|+++++||+.|+++|++|+++||||+||||++|+++|++|+|||||||++++++ +++
T Consensus 81 ~~~~~~~~v~~G~~s~~~g~~~~~~i~~Av~~~~~g~~~alVT~PInK~~i~~aG~~f~GHTE~La~~~~~~-----~~~ 155 (334)
T PRK00232 81 VDLLDPADVPFGQLSAANGHYVLETLARALDLALAGEFDAICTAPVNKGAINAAGIPFSGHTEFFAELSGTT-----GVV 155 (334)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCC-----CCE
T ss_conf 676753457889868899999999999999999759977898777578999857999898799999986899-----806
Q ss_pred CCCCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 12332211266530453133343201024567888989999985313456707999636654453100001210244588
Q gi|254780397|r 158 MMLSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAI 237 (343)
Q Consensus 158 Mll~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI 237 (343)
|||++++|||+|+||||||++|++.||+++|.+++++++++|+++ |+++||||||||||||||+|+||+||+++|.|||
T Consensus 156 Mml~~~~L~V~l~TtHipLk~V~~~It~~~I~~~i~~~~~~lk~~-gi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PaI 234 (334)
T PRK00232 156 MMLATEELRVALVTTHIPLRDVADAITPERLERVIRLLHADLRRK-GIAEPRIAVCGLNPHAGEGGHFGREEIDIIIPAL 234 (334)
T ss_pred EEEECCCEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHH
T ss_conf 889738706999972471999988669999999999999999972-9989847999728987545666673377799999
Q ss_pred HHHHHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCC
Q ss_conf 86421587643455511210002236676899985120225555414477279992087647558875522213368668
Q gi|254780397|r 238 TYLRNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQ 317 (343)
Q Consensus 238 ~~~~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~ 317 (343)
+++|++|++++|||||||+|.++++++||+||||||||||||||+++|++|||+|+|||||||||||||||||||||+||
T Consensus 235 ~~l~~~gi~v~GP~paDt~F~~~~~~~~D~~vamYHDQglip~K~~~f~~~Vn~tlGLp~iRtSpdHGTa~diagk~~A~ 314 (334)
T PRK00232 235 EELRAEGINLIGPLPADTLFLPAYLGDFDAVVAMYHDQGLPVLKYLGFGRGVNVTLGLPFIRTSVDHGTALDIAGKGIAD 314 (334)
T ss_pred HHHHHCCCEEECCCCCHHHHHHHHCCCCCEEEEECCCCCHHHHHHCCCCCCEEEECCCCEEEECCCCCCHHHHHCCCCCC
T ss_conf 99997891288990828887765505899999955243127665235676279953899147789987066661789899
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 3899999999999998520
Q gi|254780397|r 318 EESLVSALKIAAQLGYQKN 336 (343)
Q Consensus 318 ~~s~~~ai~~a~~~~~~~~ 336 (343)
++||++||++|.+|++||+
T Consensus 315 ~~s~~~Ai~~A~~~a~~r~ 333 (334)
T PRK00232 315 VGSFITALNLAIRMAANRR 333 (334)
T ss_pred HHHHHHHHHHHHHHHHHCC
T ss_conf 6999999999999998527
No 3
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=0 Score=892.81 Aligned_cols=331 Identities=34% Similarity=0.561 Sum_probs=318.0
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCEEEECC
Q ss_conf 98888389971898774789999984285232489899993999999999981899744753861011126785376103
Q gi|254780397|r 1 MDEFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALPIISS 80 (343)
Q Consensus 1 M~k~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~~~i~i~~~ 80 (343)
|+| ++|+||+||||||||||++|+|++.++.+.+++|+|||+++++++++.++++++++.++..++.....+.+++++.
T Consensus 1 M~K-P~IaIT~GDPaGIGpEIi~Kal~~~~~~~~~~~viigd~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~i~vi~~ 79 (333)
T PRK03743 1 MKK-PIIAIPMGDPAGIGPEIVVKSLNDKEIYDVCKPVVIGDAKVLEQAMKFCGVDLNINKIKTPAEGKYELGTIDLIDL 79 (333)
T ss_pred CCC-CEEEEECCCCCHHHHHHHHHHHHCCCHHCCCCEEEEECHHHHHHHHHHHCCCCCEEECCCHHHHHCCCCCCEEEEC
T ss_conf 999-9899938885174899999999586034089999998899999999980989853672887674354687127746
Q ss_pred CC--CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 33--2200135531000002467788776643012343044322344777641013256478999983423588665211
Q gi|254780397|r 81 PC--GAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVM 158 (343)
Q Consensus 81 ~~--~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~M 158 (343)
+. ..++++|++++++|+++++||+.|+++|++|++|||||+||||++|+.+|++|+|||||||++++++ +++|
T Consensus 80 ~~~~~~~~~~G~~s~~~g~~a~~~l~~A~~~~~~g~~dalVT~PInK~~l~~ag~~f~GHTE~La~~~~~~-----~~~m 154 (333)
T PRK03743 80 GNVDIDELKWGKVQALAGKAAFEYIKKSVELAKAGKVDAIATTPINKEALKAAGVNYIGHTEILADLTDTE-----DPLT 154 (333)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCC-----CCEE
T ss_conf 87762326779868899999999999999999739867798788645547544899898799999986788-----6120
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 23322112665304531333432010245678889899999853134567079996366544531000012102445888
Q gi|254780397|r 159 MLSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAIT 238 (343)
Q Consensus 159 ll~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~ 238 (343)
||++++|||+|+||||||++|++.||+++|.+++++++++|++ ||+++||||||||||||||+|+||+||+++|.|||+
T Consensus 155 ml~~~~L~V~l~TtHipLk~V~~~it~~~I~~~i~~~~~~lk~-~gi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PAI~ 233 (333)
T PRK03743 155 MFEVHNLRVFFLTRHVSLRKACDLVTKERVLDYIIRCTKALEK-LGVKNPKMAVAGLNPHSGEHGLFGREEMDEIVPAIE 233 (333)
T ss_pred HEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 0012873799877888889997745489999999999999998-099998289998489876667666413113099999
Q ss_pred HHHHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCH
Q ss_conf 64215876434555112100022366768999851202255554144772799920876475588755222133686683
Q gi|254780397|r 239 YLRNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQE 318 (343)
Q Consensus 239 ~~~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~ 318 (343)
++|++|++++|||||||+|.++.+++||+||||||||||||||+++|++|||+|+|||||||||||||||||||||+||+
T Consensus 234 ~lk~~gi~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~tlGLp~irtSpdHGTAfdIagk~~A~~ 313 (333)
T PRK03743 234 EAQKMGINVVGPVPADSVFHLALQGRYDAVLSLYHDQGHIATKTLDFERTISITNGLPFLRTSVDHGTAFDIAGTGIASS 313 (333)
T ss_pred HHHHCCCCEECCCCCHHHHHHHCCCCCCEEEECCCCCCHHHHHHCCCCCCEEEECCCCEEEECCCCCCHHHHHCCCCCCH
T ss_conf 99977986768999567777511588898997674542076652357874799469992477899870466617898996
Q ss_pred HHHHHHHHHHHHHHHHHHCC
Q ss_conf 89999999999999852001
Q gi|254780397|r 319 ESLVSALKIAAQLGYQKNLC 338 (343)
Q Consensus 319 ~s~~~ai~~a~~~~~~~~~~ 338 (343)
+||++|+++|.+||+||+..
T Consensus 314 ~s~~~Ai~~a~~~a~~~~~~ 333 (333)
T PRK03743 314 VSMEEAIKLAAKYAPKFKKK 333 (333)
T ss_pred HHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999874069
No 4
>PRK03367 consensus
Probab=100.00 E-value=0 Score=887.53 Aligned_cols=328 Identities=33% Similarity=0.541 Sum_probs=311.5
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCC-CCCCEEEEC
Q ss_conf 9888838997189877478999998428523248989999399999999998189974475386101112-678537610
Q gi|254780397|r 1 MDEFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSI-FKKALPIIS 79 (343)
Q Consensus 1 M~k~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~-~~~~i~i~~ 79 (343)
|.+++||+||+||||||||||++|++++.. ..+++++||+.+++++++.+++++++..++..+.... ..+.+++++
T Consensus 1 mm~~~~IaIT~GDPaGIGPEIi~kl~~~~~---~~~~iv~gd~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~ 77 (329)
T PRK03367 1 MVKNQRVVITPGEPAGIGPDLVVQLAQREW---PVELVVCADPALLTDRAAMLGLPLTLRPYSPDQPAQPQTAGTLTLLP 77 (329)
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHCCC---CCCEEEEECHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEEEEEC
T ss_conf 998997899878875318999999970068---98889997899999999975999458873887656646588347861
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 33322001355310000024677887766430123430443223447776410132564789999834235886652112
Q gi|254780397|r 80 SPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMM 159 (343)
Q Consensus 80 ~~~~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Ml 159 (343)
.+...++.+|++++++|+++++||+.|+++|++|+++||||+||||++|+.+|++|+|||||||++++.+ +++||
T Consensus 78 ~~~~~~~~~G~~s~~~g~~~~~~l~~Av~~~~~g~~~alVTaPInK~~i~~aG~~f~GHTE~La~~~~~~-----~~~Mm 152 (329)
T PRK03367 78 VALRAPVTPGQLAVENGHYVVETLARACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAK-----KVVMM 152 (329)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCC-----CEEEE
T ss_conf 6767788889728899999999999999999829878999774158999868999898399999986899-----65766
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 33221126653045313334320102456788898999998531345670799963665445310000121024458886
Q gi|254780397|r 160 LSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITY 239 (343)
Q Consensus 160 l~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~ 239 (343)
|++++|||+|+||||||++|++.||+++|.+++++++++|+++||+++||||||||||||||+|+||+||+++|.|||++
T Consensus 153 l~~~~LrV~lvTtHipLk~V~~~It~~~I~~~i~~~~~~l~~~~gi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PaI~~ 232 (329)
T PRK03367 153 LATEELRVALATTHLPLRAIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPVLDE 232 (329)
T ss_pred EECCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 63587489985036328998863899999999999999999835988985999950898765677773558889999999
Q ss_pred HHHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHH
Q ss_conf 42158764345551121000223667689998512022555541447727999208764755887552221336866838
Q gi|254780397|r 240 LRNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEE 319 (343)
Q Consensus 240 ~~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~ 319 (343)
+|++|++++|||||||+|.++.+++||+||||||||||||||+++|++|||+|+|||||||||||||||||||||+||+.
T Consensus 233 l~~~gi~~~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~~~f~~~VnvtlGLp~iRtS~dHGTa~diagkg~A~~~ 312 (329)
T PRK03367 233 LRAQGMNLNGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGRGKADVG 312 (329)
T ss_pred HHHCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCHHHHHHCCCCCCEEEECCCCEEEECCCCCCHHHHHCCCCCCHH
T ss_conf 99769987899683578788645789999982514520666530467617996389924778998705666278989969
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998520
Q gi|254780397|r 320 SLVSALKIAAQLGYQKN 336 (343)
Q Consensus 320 s~~~ai~~a~~~~~~~~ 336 (343)
||++||++|++|++||+
T Consensus 313 s~~~Ai~~A~~~~~n~~ 329 (329)
T PRK03367 313 SFITALNLAIKMIVNTQ 329 (329)
T ss_pred HHHHHHHHHHHHHHCCC
T ss_conf 99999999999986079
No 5
>PRK04607 consensus
Probab=100.00 E-value=0 Score=886.09 Aligned_cols=327 Identities=35% Similarity=0.553 Sum_probs=309.1
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCC-CCCEEEEC
Q ss_conf 98888389971898774789999984285232489899993999999999981899744753861011126-78537610
Q gi|254780397|r 1 MDEFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIF-KKALPIIS 79 (343)
Q Consensus 1 M~k~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~-~~~i~i~~ 79 (343)
|++++||+||+|||+||||||++|++++... .+++++||+++++++++.+++++++..++..+..... .+.+++.+
T Consensus 2 M~~~k~IaIT~GDPaGIGpEIilk~~~~~~~---~~~viigd~~~l~~~~~~lg~~~~~~~~~~~~~~~~~~~~~l~v~~ 78 (330)
T PRK04607 2 MNSIKRIVVTAGEPAGIGPDLVLALSKEDWP---HQLVVCADKQLLAERAAQLGIQVQLLDYNADLAPQAQQAGTLLVEH 78 (330)
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHHCCC---CCEEEEECHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEEEEEC
T ss_conf 9889948995588762179999998513588---8879998999999999984999457555866556624488458843
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 33322001355310000024677887766430123430443223447776410132564789999834235886652112
Q gi|254780397|r 80 SPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMM 159 (343)
Q Consensus 80 ~~~~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Ml 159 (343)
.+...++.+|++|+++|+++++||+.|+++|++|++|||||+||||++|+.+|++|+|||||||++++.+ +++||
T Consensus 79 ~~~~~~~~~G~~s~~~g~~~~~sl~~Av~~~~~g~~dalVT~PInK~~i~~ag~~f~GHTE~LA~~~~~~-----~~~Mm 153 (330)
T PRK04607 79 IELAEPVVAGQLNEANGHYVLKTLERAALGCMNGEFDAIVTGPVHKGVINRAGVAFSGHTEFFAEQSNTP-----LVVMM 153 (330)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCCHHHHHHHHCCC-----CEEEE
T ss_conf 5667877889739899999999999999999729878899773149999857999998178987541466-----45554
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 33221126653045313334320102456788898999998531345670799963665445310000121024458886
Q gi|254780397|r 160 LSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITY 239 (343)
Q Consensus 160 l~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~ 239 (343)
|++++|||+|+||||||++|++.||+++|.+++++++++|+++||+++||||||||||||||+|+||+||+++|.|||++
T Consensus 154 l~~~~LrV~lvTtHipLk~V~~~it~~~I~~~i~~~~~~l~~~fgi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PaI~~ 233 (330)
T PRK04607 154 LATEGLRVALVTTHIPLAYVSKAVTEERLEQIIDILHKDLVEKFAIAEPKIYVCGLNPHAGEDGCLGREEIETITPTLEK 233 (330)
T ss_pred ECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 30797089996146879999999809999999999999999862888981899950887655677764438789999999
Q ss_pred HHH-CCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCH
Q ss_conf 421-5876434555112100022366768999851202255554144772799920876475588755222133686683
Q gi|254780397|r 240 LRN-DNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQE 318 (343)
Q Consensus 240 ~~~-~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~ 318 (343)
+++ +|++++|||||||+|.++++++||+||||||||||||||+++|++|||+|+|||||||||||||||||||||+||+
T Consensus 234 l~~~~gi~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~~~f~~~Vn~TlGLP~iRtS~dHGTa~dIag~g~A~~ 313 (330)
T PRK04607 234 LRQEKGMNLVGPLPADTIFNEKYLNDADAVLGMYHDQVLPVLKYKGFGRSVNITLGLPFIRTSVDHGTALELAGTGQADT 313 (330)
T ss_pred HHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCHHHHHHCCCCCCEEEECCCCEEEECCCCCCHHHHHCCCCCCH
T ss_conf 88755967689968177765420358999998351442176664256763799548992477899870466617898996
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999852
Q gi|254780397|r 319 ESLVSALKIAAQLGYQK 335 (343)
Q Consensus 319 ~s~~~ai~~a~~~~~~~ 335 (343)
+||++||++|.+|++||
T Consensus 314 ~S~~~Ai~~A~~~~~~r 330 (330)
T PRK04607 314 GSFRTALTHAIELVEKK 330 (330)
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 99999999999998549
No 6
>PRK03877 consensus
Probab=100.00 E-value=0 Score=882.97 Aligned_cols=325 Identities=36% Similarity=0.574 Sum_probs=312.5
Q ss_pred CCC-EEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCEEEECCC-
Q ss_conf 883-899718987747899999842852324898999939999999999818997447538610111267853761033-
Q gi|254780397|r 4 FLP-LILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALPIISSP- 81 (343)
Q Consensus 4 ~~p-I~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~~~i~i~~~~- 81 (343)
||| |+||+|||+||||||++|+|++.++.+.++|++|||+++++++++.++.+++++.++..++.+...+.+++++..
T Consensus 1 mKP~IaIT~GDPaGIGpEIilKal~~~~~~~~~~~vvigd~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~ 80 (328)
T PRK03877 1 MKPIIGITMGDAAGVGPEIIVKALADKSVYEQCRPLVIGDAKRLERAGRIVGSELKVRAIQDPDEARFEFGTIDCIDLDL 80 (328)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCHHHCCCCEEEEECHHHHHHHHHHCCCCCCEEECCCHHHHHCCCCCCEEEECCC
T ss_conf 99979991588537699999999968113505999999789999999998299971467389778523589315874554
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 32200135531000002467788776643012343044322344777641013256478999983423588665211233
Q gi|254780397|r 82 CGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLS 161 (343)
Q Consensus 82 ~~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Mll~ 161 (343)
...++++|++++++|+++++||+.|+++|++|+++||||+||||++|+.+|++|+|||||||++++.+ +++|||+
T Consensus 81 ~~~~~~~G~~~~~~g~~~~~sl~~A~~~~~~g~~~alVT~PInK~~i~~ag~~f~GHTE~La~~~~~~-----~~~Mml~ 155 (328)
T PRK03877 81 LPADLPFGKVSAVAGDAAFRYIERAVELAKAGKIDAICTAPLNKEALHAGGHMFPGHTEILAHLTGTE-----EVSMMLV 155 (328)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCC-----CEEEEEE
T ss_conf 66777889879889999999999999999749868799678067889857999898199999886478-----7257785
Q ss_pred CCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCC-CCCHHHHHHHHHH
Q ss_conf 221126653045313334320102456788898999998531345670799963665445310000-1210244588864
Q gi|254780397|r 162 GPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGI-EEKNIIIPAITYL 240 (343)
Q Consensus 162 ~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~-EE~~iI~PaI~~~ 240 (343)
+++|||+|+||||||++|++.||+++|.+++++++++|++ ||+++||||||||||||||+|+||+ ||+++|.|||+++
T Consensus 156 ~~~LrV~l~TtHipLk~V~~~It~~~I~~~i~l~~~~lk~-~gi~~PrIaV~GLNPHAGE~G~~G~~EE~~iI~PaI~~l 234 (328)
T PRK03877 156 SPKLKVIHVTTHVGLIDAIDKIEPERVYRVIELAHETLVR-AGIKNPRIAVCGINPHAGENGLFGYGEEEEKIVPAIEAA 234 (328)
T ss_pred CCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHH-CCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 5986899850057479999853999999999999999998-099997189985279876556658626787799999999
Q ss_pred HHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHH
Q ss_conf 21587643455511210002236676899985120225555414477279992087647558875522213368668389
Q gi|254780397|r 241 RNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEES 320 (343)
Q Consensus 241 ~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s 320 (343)
|++|++++|||||||+|.+.++++||+||||||||||||||+++|++|||+|+|||||||||||||||||||||+||++|
T Consensus 235 ~~~gi~i~GP~paDt~F~~~~~~~~D~vlaMYHDQglip~K~l~f~~~vn~TlGLp~irtSpdHGta~diaGk~~A~~~s 314 (328)
T PRK03877 235 QAEGIDVEGPLPADTLFFRAGRGDFDLVVAMYHDQGHGPVKVLGLEAGVNITVGLPVIRTSVDHGTAFDIAGKGIADERS 314 (328)
T ss_pred HHCCCEEECCCCCHHHHHHHHCCCCCEEEEECCCCCCHHHHHCCCCCCEEEECCCCEEEECCCCCCHHHHHCCCCCCHHH
T ss_conf 97897088573818898876447899999955355316564224787479956999137789987056660789898699
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999985
Q gi|254780397|r 321 LVSALKIAAQLGYQ 334 (343)
Q Consensus 321 ~~~ai~~a~~~~~~ 334 (343)
|++||++|++|+++
T Consensus 315 ~~~Ai~~A~~~a~~ 328 (328)
T PRK03877 315 MLEALRQAAELAPK 328 (328)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999987269
No 7
>PRK02848 consensus
Probab=100.00 E-value=0 Score=876.44 Aligned_cols=331 Identities=29% Similarity=0.473 Sum_probs=312.3
Q ss_pred CCC-EEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCEEEECCCC
Q ss_conf 883-8997189877478999998428523248989999399999999998189974475386101112678537610333
Q gi|254780397|r 4 FLP-LILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALPIISSPC 82 (343)
Q Consensus 4 ~~p-I~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~~~i~i~~~~~ 82 (343)
-|| |+||+|||+||||||++|+|++.+..+.+++++|||+++++++++.++++++++.++..++.......+.++++..
T Consensus 6 ~KP~IaIT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~ 85 (341)
T PRK02848 6 AKPVIALTLGDPAGIGPELIAKLLADPDVREKANIVLVGDRWLWEEGMRIAGVEVDLEPVDSLAEARFATARPAFLDLDT 85 (341)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCHHHCCCCCEEEEECHHHHHHHHHHCCCCCCEEECCCHHHCCCCCCCCEEECCCC
T ss_conf 99989993478743389999999847434069988999899999999998499985356386454451327834850666
Q ss_pred --CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf --220013553100000246778877664301234304432234477764101325647899998342358866521123
Q gi|254780397|r 83 --GAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMML 160 (343)
Q Consensus 83 --~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Mll 160 (343)
..++++|++|+++|+|+++||+.|+++|++|+++||||+||||++|+.+|++|+||||||+++++.+ ...+||+
T Consensus 86 ~~~~~~~~G~~s~~~g~~~~~si~~Av~~~~~g~~~alVT~PInK~~l~~aG~~f~GHTE~la~~~~~~----~~~~~~~ 161 (341)
T PRK02848 86 IDPADVVRGEATAAGGRYALETLDLALDLARAGDVDAICFAPLNKQAMKLAGLRHEDELHWFAEYLGFT----GYFCEFN 161 (341)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCC----CCCEEEE
T ss_conf 662447879858899999999999999999739978899776688999525789874799999984889----7503776
Q ss_pred CCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 32211266530453133343201024567888989999985313456707999636654453100001210244588864
Q gi|254780397|r 161 SGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYL 240 (343)
Q Consensus 161 ~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~ 240 (343)
++++|||+|+||||||++|++.||+++|.+++++++++|+++ |+++||||||||||||||+|+||+||+++|.|||+++
T Consensus 162 ~~~~L~v~~~TtHipLk~V~~~It~~~I~~~i~~~~~~lk~~-gi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PAI~~l 240 (341)
T PRK02848 162 VLDDLWTARVTSHIPLKDVAANLSQERILDAIELIYRSLRRA-GVARPRIAVAALNPHGGDGGSFGREEIDIIEPAVEKA 240 (341)
T ss_pred ECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 238647898516853999999873999999999999999981-8989857999548987656787615589899999999
Q ss_pred HHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHH
Q ss_conf 21587643455511210002236676899985120225555414477279992087647558875522213368668389
Q gi|254780397|r 241 RNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEES 320 (343)
Q Consensus 241 ~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s 320 (343)
|++|++++|||||||+|.+.++++||+||||||||||||||+++|++|||+|+|||||||||||||||||||||+||++|
T Consensus 241 ~~~gi~v~GP~pADt~F~~~~~~~~D~vlaMYHDQglip~K~l~f~~~vN~TlGLp~iRtSpDHGTa~diagk~~A~~~S 320 (341)
T PRK02848 241 RARGIPVDGPFPADTIFLKAQRGEFDAVVTMYHDQGQIAIKLMGFSRGVTVQGGLPIPITTPAHGTAYDIAGKGIADVGA 320 (341)
T ss_pred HHCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCCCCHHHHHCCCCCCEEEECCCCEEEECCCCCCHHHHHCCCCCCHHH
T ss_conf 97890087998818898886527899999835245306565335787379834899216789987046650789899699
Q ss_pred HHHHHHHHHHHHHHHHCCH
Q ss_conf 9999999999998520010
Q gi|254780397|r 321 LVSALKIAAQLGYQKNLCN 339 (343)
Q Consensus 321 ~~~ai~~a~~~~~~~~~~~ 339 (343)
|++||++|.+|+++|+...
T Consensus 321 ~~~Ai~~A~~~~~~r~~~~ 339 (341)
T PRK02848 321 TRQAFLIACRMGAARRAQS 339 (341)
T ss_pred HHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999644440
No 8
>PRK04507 consensus
Probab=100.00 E-value=0 Score=873.94 Aligned_cols=323 Identities=35% Similarity=0.576 Sum_probs=303.5
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCEEEECC
Q ss_conf 98888389971898774789999984285232489899993999999999981899744753861011126785376103
Q gi|254780397|r 1 MDEFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALPIISS 80 (343)
Q Consensus 1 M~k~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~~~i~i~~~ 80 (343)
|++ ++|+||+||||||||||++|+|++.+ ..+++++|||+++++++++.++.++++...+ ......+.+++.++
T Consensus 1 M~~-P~IaIT~GDPaGIGPEIilK~~~~~~--~~~~~vvigd~~~l~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~ 74 (323)
T PRK04507 1 MMV-PSLALVPGEPAGIGPELCVRLAQQPR--SDAHLIAYADPDTLHSAAKALSLPVRLLDPD---QPARAPGDLPLHPV 74 (323)
T ss_pred CCC-CEEEEECCCCCHHHHHHHHHHHHCCC--CCCCEEEEECHHHHHHHHHHCCCCEEECCCC---CHHHCCCCCEEEEC
T ss_conf 999-83899158862669999999986664--5899899989999999998669981762732---04326897225213
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 33220013553100000246778877664301234304432234477764101325647899998342358866521123
Q gi|254780397|r 81 PCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMML 160 (343)
Q Consensus 81 ~~~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Mll 160 (343)
....++++|++++++|+++++||+.|+++|++|+++||||+||||++|+++|++|+|||||||++++. +++|||
T Consensus 75 ~~~~~~~~G~~~~~~g~~~~~~l~~Av~~~~~g~~~aiVTaPInK~~l~~aG~~f~GHTE~La~~~~~------~~~Mml 148 (323)
T PRK04507 75 RQAVPTRFGAPDPANAAAVIAGLRGAAGDCLHGRLQGIVTGPVHKAVINAGGIAYTGTTELLAAQAGC------PVVMML 148 (323)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCC------CEEEEE
T ss_conf 45576768986878999999999999999975997799977536999985799989726999887388------268888
Q ss_pred CCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 32211266530453133343201024567888989999985313456707999636654453100001210244588864
Q gi|254780397|r 161 SGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYL 240 (343)
Q Consensus 161 ~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~ 240 (343)
++++|||+|+|+|||||+|++.||+++|.+++++++++|+++||+++||||||||||||||+|+||+||+++|.|||+++
T Consensus 149 ~~~~LrV~l~TtHIpLk~V~~~It~e~I~~~i~l~~~~l~~~fgi~~PrIaV~gLNPHAGE~G~~G~EE~~iI~Pai~~~ 228 (323)
T PRK04507 149 ANSIVRVALVTTHLPLRAVPDAITADALERCLRITHTAMQRDFGLEHPRIAVLGLNPHAGEDGLLGREELDVVIPVLEQL 228 (323)
T ss_pred ECCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 52774799841347799999871999999999999999999639989958996048876666766502232327899999
Q ss_pred HHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHH
Q ss_conf 21587643455511210002236676899985120225555414477279992087647558875522213368668389
Q gi|254780397|r 241 RNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEES 320 (343)
Q Consensus 241 ~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s 320 (343)
|++|++++|||||||+|.++++++||+||||||||||||||+++|++|||+|+|||||||||||||||||||||+||++|
T Consensus 229 ~~~g~~~~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~tlGLP~irtS~dHGta~diag~g~A~~~s 308 (323)
T PRK04507 229 RGEGMQLIGPLPADTAFLPQKLIGFDAVVAMYHDQGLPVLKYSGFEQAVNITLGLPYPRVAVDHGTALELAGRGVADPSS 308 (323)
T ss_pred HHCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCHHHHHHCCCCCCEEEECCCCEEEECCCCCCHHHHHCCCCCCHHH
T ss_conf 96398878996807787664246989999826145448787504787279943899027789987156660789899699
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999852
Q gi|254780397|r 321 LVSALKIAAQLGYQK 335 (343)
Q Consensus 321 ~~~ai~~a~~~~~~~ 335 (343)
|++||++|.+|+++|
T Consensus 309 ~~~Ai~la~~~~~~r 323 (323)
T PRK04507 309 LMAATALCARLAARR 323 (323)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999998549
No 9
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=0 Score=873.74 Aligned_cols=323 Identities=32% Similarity=0.545 Sum_probs=301.6
Q ss_pred CCCCC-CEEEECCCCCCCCHHHHHHHHCCCCH-HCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCEEEE
Q ss_conf 98888-38997189877478999998428523-24898999939999999999818997447538610111267853761
Q gi|254780397|r 1 MDEFL-PLILTQGDPAGIGPDISLKAWASRQI-TAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALPII 78 (343)
Q Consensus 1 M~k~~-pI~IT~GDPaGIGpEIilKal~~~~~-~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~~~i~i~ 78 (343)
|+.++ ||+||+|||+||||||++|+|++... ...++|++|||+++++++++.+++++... ...+.+++.
T Consensus 1 m~~~~lrIaIT~GDPaGIGPEIilKal~~~~~~~~~~~~vviGd~~~l~~~~~~l~~~~~~~---------~~~~~~~v~ 71 (329)
T PRK01909 1 MRPQPLQIAITTGEPAGVGPELTVQALADAATRWPDARFTVLGDAALLAARAAAVGVDWARL---------AAGGHVSVA 71 (329)
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHCCCCHHHH---------CCCCCCCEE
T ss_conf 99999769997588850179999999986575468988899979999999999839983550---------468975152
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 03332200135531000002467788776643012343044322344777641013256478999983423588665211
Q gi|254780397|r 79 SSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVM 158 (343)
Q Consensus 79 ~~~~~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~M 158 (343)
+.+...++++|++++++|+++++||+.|+++|++|++|||||+||||++|+.+||+|+|||||||++++++ +++|
T Consensus 72 ~~~~~~~~~~G~~~~~~g~~~~~~l~~Av~~~~~g~~dalVTaPInK~~i~~aG~~f~GHTE~La~~~~~~-----~~~M 146 (329)
T PRK01909 72 HRALAAPAEAGKLDAANGRYVLDLLDAAIDGALAGRYDAIVTAPLQKSTINDAGVPFTGHTEYLAERTHTP-----RVVM 146 (329)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCC-----CEEE
T ss_conf 16777878789808899999999999999999759888999771289999867999898789999983899-----7599
Q ss_pred CCC---CCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHH
Q ss_conf 233---22112665304531333432010245678889899999853134567079996366544531000012102445
Q gi|254780397|r 159 MLS---GPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIP 235 (343)
Q Consensus 159 ll~---~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~P 235 (343)
||+ +++|||+|+|+||||++|++.||+++|.+++++++++|+++||+++||||||||||||||+|+||+||+++|.|
T Consensus 147 ml~~~~~~~LrV~l~T~HipLk~V~~~It~~~I~~~i~~~~~~l~~~fgi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~P 226 (329)
T PRK01909 147 MLAGTGERPLRVALATTHLPLRDVSAALTIDGLVETLAIIDRDLRRDFGLAAPRILVTGLNPHAGENGYLGREEIDVIEP 226 (329)
T ss_pred EEEECCCCCEEEEEECCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 99866998379998456611999998423479999999999999984488898599995089876556663377888999
Q ss_pred HHHHHHHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCC
Q ss_conf 88864215876434555112100022366768999851202255554144772799920876475588755222133686
Q gi|254780397|r 236 AITYLRNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSL 315 (343)
Q Consensus 236 aI~~~~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~ 315 (343)
||+++|++|++++|||||||+|.++++++||+||||||||||||||+++|++|||+|+|||||||||||||||||||||+
T Consensus 227 AI~~~~~~gi~v~GP~paDt~F~~~~~~~~D~vlaMYHDQglip~K~l~f~~~vn~TlGLp~iRtS~dHGTA~diAGkg~ 306 (329)
T PRK01909 227 ALARARAAGIDARGPYPADTLFQPRHLEDADCVLAMFHDQGLPVLKYATFGEGINVTLGLPIIRTSVDHGTALDLAGTGR 306 (329)
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCHHHHHHCCCCCCEEEECCCCCEEECCCCCHHHHHHCCCC
T ss_conf 99999847996200679378989975779899998550123587875357873799348991067899871566627898
Q ss_pred CCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6838999999999999985200
Q gi|254780397|r 316 TQEESLVSALKIAAQLGYQKNL 337 (343)
Q Consensus 316 a~~~s~~~ai~~a~~~~~~~~~ 337 (343)
||++||++||++|.+|++||+-
T Consensus 307 A~~~s~~~Ai~~A~~~a~~r~~ 328 (329)
T PRK01909 307 ADPGSMIAAIDTAVTMARHRRA 328 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHCCC
T ss_conf 9969999999999999985338
No 10
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=100.00 E-value=0 Score=865.07 Aligned_cols=322 Identities=36% Similarity=0.573 Sum_probs=302.3
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHH-HCCCCCCEEECCCCHHCCCCCCCEEEECCCC
Q ss_conf 883899718987747899999842852324898999939999999999-8189974475386101112678537610333
Q gi|254780397|r 4 FLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAK-QLNLSVPLYETDCKNAVSIFKKALPIISSPC 82 (343)
Q Consensus 4 ~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k-~l~~~~~i~~i~~~~~~~~~~~~i~i~~~~~ 82 (343)
-|||+||+|||+||||||++|+|++..+. .++++++|+...+++... .+..+++++.++..++....++.+++++.+.
T Consensus 2 ~K~IaIT~GDPaGIGpEIilKal~~~~~~-~~~~ivig~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~i~d~~~ 80 (326)
T PRK03371 2 TKTVAITMGDPAGIGPEIIVKALSEDGLN-GAPLVVIGCLATLKRLQAKGITPNVELRAIERVAEARFAPGIIHVIDEPL 80 (326)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCCC-CCCEEEEECHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCCEEEEEECCC
T ss_conf 98699945785263999999998574403-89989997899999999847998820464598767125898678983677
Q ss_pred --CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf --220013553100000246778877664301234304432234477764101325647899998342358866521123
Q gi|254780397|r 83 --GAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMML 160 (343)
Q Consensus 83 --~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Mll 160 (343)
...+++|++++++|+++++||+.|+++|++|+++||||+||||++|+.+|++|+|||||||++++.+ +++|||
T Consensus 81 ~~~~~~~~G~~~~~~g~~a~~sl~~Av~~~~~g~~~alVT~PInK~~i~~aG~~f~GHTE~La~~~~~~-----~~~Mml 155 (326)
T PRK03371 81 AQPEALEAGKVQAQAGDLAYRCVKRATELALRGDVQAIATAPLNKEALHLAGHNYPGHTELLATLTHSR-----DYAMVL 155 (326)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCC-----CHHHHH
T ss_conf 774557789828899999999999999999749857799678577889867999998699998874478-----637773
Q ss_pred CCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 32211266530453133343201024567888989999985313456707999636654453100001210244588864
Q gi|254780397|r 161 SGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYL 240 (343)
Q Consensus 161 ~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~ 240 (343)
++++|||+|+|+|||||+|++.||+++|.+++++++++|++ ||+++||||||||||||||+|+||+||+++|.|||+++
T Consensus 156 ~~~~LrV~lvTtHipLk~V~~~It~~~I~~~i~l~~~~lk~-~gi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PaI~~l 234 (326)
T PRK03371 156 YTDKLKVIHVSTHIALRKFLDTLSTARVETVIGIADTFLKR-VGYVKPRIAVAGVNPHAGENGLFGDEETRILTPAITDA 234 (326)
T ss_pred HCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 16874799836887699999998499999999999999998-28988707999518987666777510556259999999
Q ss_pred HHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHH
Q ss_conf 21587643455511210002236676899985120225555414477279992087647558875522213368668389
Q gi|254780397|r 241 RNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEES 320 (343)
Q Consensus 241 ~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s 320 (343)
|++|++++|||||||+|.++++++||+||||||||||||||+++|++|||+|+|||||||||||||||||||||+||++|
T Consensus 235 ~~~gi~v~GP~paDt~F~~~~~~~~D~vlaMYHDQglip~K~~~f~~~Vn~TlGLp~iRtSpdHGTa~diagkg~A~~~s 314 (326)
T PRK03371 235 RAKGMDVYGPCPPDTVFLQAYEGQYDMVVAMYHDQGHIPLKLLGFYDGVNITAGLPFIRTSADHGTAFDIAWTGKAKSES 314 (326)
T ss_pred HHCCCEEECCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHCCCCCCEEEECCCCEEEECCCCCCHHHHHCCCCCCHHH
T ss_conf 97898798998818898874356899999805245316564225787379946999147789987056661789899699
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780397|r 321 LVSALKIAAQLG 332 (343)
Q Consensus 321 ~~~ai~~a~~~~ 332 (343)
|++||++|.+||
T Consensus 315 ~~~Ai~~A~~~a 326 (326)
T PRK03371 315 MAVSIKLAMQLA 326 (326)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999859
No 11
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=0 Score=844.06 Aligned_cols=316 Identities=38% Similarity=0.601 Sum_probs=292.9
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCEEEECCCCC
Q ss_conf 88389971898774789999984285232489899993999999999981899744753861011126785376103332
Q gi|254780397|r 4 FLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALPIISSPCG 83 (343)
Q Consensus 4 ~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~~~i~i~~~~~~ 83 (343)
+++|+||+|||+||||||++|+|++.++.+.++|++|||+++++++++.+... ... + ......+++++.+..
T Consensus 1 KP~IaIT~GDPaGIGpEIilKal~~~~~~~~~~~vvig~~~~l~~~~~~l~~~-~~~-----~--~~~~~~i~v~~~~~~ 72 (332)
T PRK02746 1 RPRLAITLGDPAGIGPEVILKALASPELPKNIQPTLVGCRQLLEATYQQLKSL-GIE-----P--LADPANLDILDLPLD 72 (332)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCHHHCCCCCEEEEECHHHHHHHHHHHCCC-CCC-----C--CCCCCCCCEEECCCC
T ss_conf 99899905885366899999998571000698999997999999999984448-865-----6--588110616505777
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 20013553100000246778877664301234304432234477764101325647899998342358866521123322
Q gi|254780397|r 84 AKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGP 163 (343)
Q Consensus 84 ~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Mll~~~ 163 (343)
.++.+|++++++|+++++||+.|+++|++|+++||||+||||++|+.+|++|+|||||||++++++ +++|||+++
T Consensus 73 ~~~~~G~~~~~~g~~~~~~l~~Av~~~~~g~~~alVT~PInK~~i~~ag~~F~GHTE~La~~~~~~-----~~~Mml~~~ 147 (332)
T PRK02746 73 SEITPGKGSAASGAASFAYLTTAIEITLEGEFRALVTAPIAKSAWHAAGHHYPGQTEVLAELAGVE-----RFGMLFTAR 147 (332)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCC-----CEEEEEEEC
T ss_conf 777889869899999999999999999759977787578568999746788776899999985899-----725998743
Q ss_pred ------CCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf ------11266530453133343201024567888989999985313456707999636654453100001210244588
Q gi|254780397|r 164 ------QLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAI 237 (343)
Q Consensus 164 ------~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI 237 (343)
+|||+|+|||||||+|++.||+++|.+++++++++|++ |+++||||||||||||||+|+||+||+++|.|||
T Consensus 148 s~~~~~~LrV~l~TtHipLk~V~~~It~~~I~~~i~~~~~~lk~--gi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PaI 225 (332)
T PRK02746 148 SPHTGWRLNTLLATTHIPLSQVPKTLTPELITSKLDLLLDFCRK--FIDKPRIAIAGLNPHAGEQGQLGSEEKDWLIPWL 225 (332)
T ss_pred CCCCCCCEEEEEEECCCCHHHHHHHHCHHHHHHHHHHHHHHHHH--CCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 66667614798750565799999875999999999999999982--8878874899648887656767732101139999
Q ss_pred HHHHHC--CCCCCCCCCCHHHEEC--------CCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCC
Q ss_conf 864215--8764345551121000--------223667689998512022555541447727999208764755887552
Q gi|254780397|r 238 TYLRND--NKNIIGPLPADSMFHH--------SARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTA 307 (343)
Q Consensus 238 ~~~~~~--g~~v~GP~paDt~F~~--------~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTa 307 (343)
++++++ |++++|||||||+|.+ ..+++||+||||||||||||||+++|++|||+|+||||||||||||||
T Consensus 226 ~~l~~~~~gi~i~GP~paDt~F~~a~~~ff~~~~~~~~D~vlaMYHDQglip~K~l~f~~~Vn~TlGLp~iRtS~dHGTA 305 (332)
T PRK02746 226 ESWRQKNPDIQLLGPIPPDTCWLSAAQAWYGKGVAEAPDGYLALYHDQGLIPVKLLAFDYAVNTTIGLPFIRTSPDHGTA 305 (332)
T ss_pred HHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHEECCCCCCEEEECCCCEEEECCCCCCH
T ss_conf 99997579985862768136655554422051213568989984435455223013567637994599912678998706
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 221336866838999999999999985
Q gi|254780397|r 308 FDIAGSSLTQEESLVSALKIAAQLGYQ 334 (343)
Q Consensus 308 fdiagk~~a~~~s~~~ai~~a~~~~~~ 334 (343)
|||||||+||++||++||++|.+|++.
T Consensus 306 ~diagk~~A~~~S~~~Ai~~A~~la~~ 332 (332)
T PRK02746 306 FDIAGKGIARPQSMKAAIKLAWELSQQ 332 (332)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 666078989969999999999998529
No 12
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=100.00 E-value=0 Score=814.35 Aligned_cols=329 Identities=43% Similarity=0.687 Sum_probs=303.3
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEE-ECCCCHH-CCCCCCCEEEE
Q ss_conf 988883899718987747899999842852324898999939999999999818997447-5386101-11267853761
Q gi|254780397|r 1 MDEFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLY-ETDCKNA-VSIFKKALPII 78 (343)
Q Consensus 1 M~k~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~-~i~~~~~-~~~~~~~i~i~ 78 (343)
|.+ ++|+||+|||+||||||++++.++.... |++++|||+.+|++++++++...... .+....+ .......+.++
T Consensus 1 ~~~-~~iAit~GDPaGIGPEi~~~~~~~~~~~--~~~v~igd~~lL~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l 77 (332)
T COG1995 1 MTK-PRIAITMGDPAGIGPELVALALAELPIK--CELVVIGDKALLEAAAALLGLPVFLLEAIPDPYEAFAAGAIDLPDL 77 (332)
T ss_pred CCC-CCEEECCCCCCCCCHHHHHHHHCCCCCC--CCEEEECCHHHHHHHHHHHCCCCCCHHCCCCHHHHHHCCCCCEEEC
T ss_conf 998-8568646886667999999862104677--8769985899999999874665311001466044542147622422
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 03332200135531000002467788776643012343044322344777641013256478999983423588665211
Q gi|254780397|r 79 SSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVM 158 (343)
Q Consensus 79 ~~~~~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~M 158 (343)
+.....++++|++++.||.|++++|++|+++|.+|+++||||+||||++|+.+|++|+|||||||+++++. .++|
T Consensus 78 ~~~~~~~v~~G~~~~~~g~~~~~~l~~A~~~a~~G~~~aivT~PI~K~~l~~AG~~y~GhTe~LA~~s~~~-----~~vM 152 (332)
T COG1995 78 PLPLPAPVEAGQLSAANGAYVFETLKRAVELALAGEVDAIVTAPINKEALNDAGIPYPGHTEFLAELSGTH-----DPVM 152 (332)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCC-----CEEE
T ss_conf 45776765688757134089999999999987367346799656478999964899897789999985799-----7179
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 23322112665304531333432010245678889899999853134567079996366544531000012102445888
Q gi|254780397|r 159 MLSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAIT 238 (343)
Q Consensus 159 ll~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~ 238 (343)
||.+.+|||+++|||||||||++.||+++|.+++++++++|+++||+++|||+||||||||||+|.||+||+++|.|||+
T Consensus 153 mla~~~Lrv~lvTtHipL~~V~~~iT~e~l~~~~~i~~~~L~~~fGi~~PriaVaGLNPHaGE~G~lG~EE~diI~Paie 232 (332)
T COG1995 153 MLAVPELRVALVTTHIPLKDVPDAITPELLLEVLRILDKDLRKKFGIAEPRIAVAGLNPHAGEGGLLGREEIDIIIPAIE 232 (332)
T ss_pred EEECCCCEEEEEEECCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 86146417998750461888776658999999999999999986298876368861489887677777347788899999
Q ss_pred HHHHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCH
Q ss_conf 64215876434555112100022366768999851202255554144772799920876475588755222133686683
Q gi|254780397|r 239 YLRNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQE 318 (343)
Q Consensus 239 ~~~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~ 318 (343)
++|++|+++.||+||||+|++..+++||+||||||||||||+|+++|+++||||+||||+||||||||||||||||+||+
T Consensus 233 ~aR~~Gi~~~GPlpADT~F~~~~~~~~DavlaMYHDQgliplK~l~Fd~~VNvtlGLPfiRTS~DHGTAfDiAgkGiA~~ 312 (332)
T COG1995 233 EARAEGIDLVGPLPADTLFHPAYLANYDAVLAMYHDQGLIPLKYLGFDRGVNVTLGLPFIRTSVDHGTAFDIAGKGIADP 312 (332)
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCCEEEECCCCEEEECCCCCCHHHHHCCCCCCC
T ss_conf 99981873348999414420345505787999622664355644223532577338870340687620543304785780
Q ss_pred HHHHHHHHHHHHHHHHHHC
Q ss_conf 8999999999999985200
Q gi|254780397|r 319 ESLVSALKIAAQLGYQKNL 337 (343)
Q Consensus 319 ~s~~~ai~~a~~~~~~~~~ 337 (343)
.||++|+++|.+|+.++..
T Consensus 313 ~S~~~Ai~lA~~l~~~~~~ 331 (332)
T COG1995 313 GSLIAAIKLAAKLAAKRAN 331 (332)
T ss_pred HHHHHHHHHHHHHHHHHCC
T ss_conf 6899999999999863405
No 13
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=0 Score=802.79 Aligned_cols=302 Identities=33% Similarity=0.507 Sum_probs=275.3
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCEEEECCCCC
Q ss_conf 88389971898774789999984285232489899993999999999981899744753861011126785376103332
Q gi|254780397|r 4 FLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALPIISSPCG 83 (343)
Q Consensus 4 ~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~~~i~i~~~~~~ 83 (343)
++||+||+|||+||||||++|+|.+ +.+.+++++++|.+++++.++.++.+++. .+.+.+....
T Consensus 1 Kp~IaIT~GDPaGIGPEIilKa~~~--~~~~~~pii~~~~~~l~~~~~~l~~~~~~--------------~~~~~~~~~~ 64 (304)
T PRK03946 1 KKKIAISIGDINGIGLEIALKSHEE--VSKICEPLYFIDEELLNQASQLLNLKIPN--------------DFEIDEPGLL 64 (304)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHH--HHHHCCEEEEECHHHHHHHHHHCCCCCCC--------------CCEECCCCCC
T ss_conf 9918994888634399999998287--68629919998899999999984999964--------------4213256644
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 20013553100000246778877664301234304432234477764101325647899998342358866521123322
Q gi|254780397|r 84 AKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGP 163 (343)
Q Consensus 84 ~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Mll~~~ 163 (343)
.++++|++++++|+++++||+.|+++|++|+++||||+||||++|+.+|++|+||||||+++++. +++|||+++
T Consensus 65 ~~~~~G~~~~~~g~~~~~~l~~Ai~~~~~g~~~aiVT~PInK~~i~~aG~~f~GHTE~La~~~~~------~~~Mml~~~ 138 (304)
T PRK03946 65 FEIKPGKVSAKSGAYSFESFKKAVELADSKEVDAICTLPIHKKAWQKAGIPYVGHTDALRDRFKK------NAIMMLGCE 138 (304)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHHC------CCEEEECCC
T ss_conf 56889982889999999999999999983998799967546999985899989816999998602------432311168
Q ss_pred CCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH-HH
Q ss_conf 11266530453133343201024567888989999985313456707999636654453100001210244588864-21
Q gi|254780397|r 164 QLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYL-RN 242 (343)
Q Consensus 164 ~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~-~~ 242 (343)
+|||+|+||||||++|++.||+++|.++++.++++ +++||||||||||||||+|+||+||++| .|+|+++ ++
T Consensus 139 ~L~v~~~TtHipLk~V~~~it~~~i~~~i~~~~~~------~~~prIaV~GLNPHAGE~G~~G~EE~~I-i~~i~~~~~~ 211 (304)
T PRK03946 139 KLFVALFTDHIPLKKVSQLITVKALVKFLLDFYKS------TQFKKVGVLGFNPHAGDEGVLGEEEKII-LKAIKKANQF 211 (304)
T ss_pred CEEEEEECCCCCHHHHHHHHCHHHHHHHHHHHHHH------CCCCCEEEEEECCCCCCCCCCCCCHHHH-HHHHHHHHHH
T ss_conf 63899856887599999986899999999999853------5788459994177630005677413476-9999999996
Q ss_pred CCCCC-CCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHH
Q ss_conf 58764-34555112100022366768999851202255554144772799920876475588755222133686683899
Q gi|254780397|r 243 DNKNI-IGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESL 321 (343)
Q Consensus 243 ~g~~v-~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~ 321 (343)
.|+++ +|||||||+|.++.+++||+||||||||||||||+++|++|||+|+|||||||||||||||||||||+||++||
T Consensus 212 ~~~~~~~GP~paDt~F~~~~~~~~D~vvaMYHDQglip~K~l~f~~~vn~TlGLp~iRtSpdHGTa~dIaGkg~A~~~s~ 291 (304)
T PRK03946 212 LGFEIFFGPLVPDSAFTPNKRKNFNRYVAMYHDQGLAPLKALYFDESINVSLNLPILRTSVDHGTAFDIAYKNKANTKSY 291 (304)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCCCCEEEECCCCEEEECCCCCCHHHHHCCCCCCHHHH
T ss_conf 69871338988268888754157999998152443265652247872799528990367899870566607898996999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999985
Q gi|254780397|r 322 VSALKIAAQLGYQ 334 (343)
Q Consensus 322 ~~ai~~a~~~~~~ 334 (343)
++|+++|.+|+++
T Consensus 292 ~~Ai~~A~~la~~ 304 (304)
T PRK03946 292 LNAIKYAINLGSK 304 (304)
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999998419
No 14
>pfam04166 PdxA Pyridoxal phosphate biosynthetic protein PdxA. In Escherichia coli the coenzyme pyridoxal 5'-phosphate is synthesized de novo by a pathway that is thought to involve the condensation of 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose, catalysed by the enzymes PdxA and PdxJ, to form either pyridoxine (vitamin B6) or pyridoxine 5'-phosphate.
Probab=100.00 E-value=0 Score=787.17 Aligned_cols=297 Identities=39% Similarity=0.615 Sum_probs=284.9
Q ss_pred CCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCEEEE-CCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 852324898999939999999999818997447538610111267853761-0333220013553100000246778877
Q gi|254780397|r 28 SRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALPII-SSPCGAKIVTGTPNPQTASSTIANIEKA 106 (343)
Q Consensus 28 ~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~~~i~i~-~~~~~~~~~~G~~s~~~g~~~~~sl~~A 106 (343)
++++.+.|+||+|||+++++++++.++++++++.++..++.......+.++ +.+...++++|++++++|+|+++||++|
T Consensus 2 ~kei~~~C~PVViGd~~lL~~~ak~lgl~~~i~~I~~~~~~~~~~~~i~~v~~~~~~~~~~~Gk~s~~~G~~~~~~l~~A 81 (299)
T pfam04166 2 AKELREKCTPVVIADEALLERAAKLLGLPLDLRDIEFVEPAQEEPAGLLVIDPLPLKVPVVAGEVSAASGAYVLETLARA 81 (299)
T ss_pred CHHHHCCCCEEEEECHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 86786289799998999999999982999538980875544225687689705656777788985889999999999999
Q ss_pred HHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCHH
Q ss_conf 66430123430443223447776410132564789999834235886652112332211266530453133343201024
Q gi|254780397|r 107 VSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRILSTK 186 (343)
Q Consensus 107 ~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Mll~~~~L~V~l~TtHiPLk~V~~~it~~ 186 (343)
+++|++|++|||||+||||++|+.+|++|+|||||||++++.+ +++|||++++|||+|+|||||||+|++.||++
T Consensus 82 v~~~~~g~~dalVT~PInK~~i~~ag~~f~GHTE~La~~~~~~-----~~~Mml~~~~LrV~lvTtHipLk~V~~~It~~ 156 (299)
T pfam04166 82 VALALDGEFDAIVTGPINKGALKDAGIPYSGHTEFLAERTGTH-----SVVMMLATGDLRVALVTTHIPLKDVPDAITFE 156 (299)
T ss_pred HHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCC-----CEEEEEECCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999759988999797388999867999898689998763689-----73799964974899953465699999875199
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHEECCCCCCCC
Q ss_conf 56788898999998531345670799963665445310000121024458886421587643455511210002236676
Q gi|254780397|r 187 RIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNIIGPLPADSMFHHSARQCYD 266 (343)
Q Consensus 187 ~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~GP~paDt~F~~~~~~~~D 266 (343)
+|.+++++++++|+++||+++||||||||||||||+|+||+||+++|.|||++++++|++++|||||||+|.+..+++||
T Consensus 157 ~I~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHaGE~G~~G~EE~~iI~Pai~~~~~~gi~v~GP~paDt~F~~~~~~~~D 236 (299)
T pfam04166 157 LVEDFLRLLHKALREKFGIAEPRIAVAGLNPHAGEGGVLGREEIEEIIPALEQARAEGIDLLGPLPADTAFRPVLLGRYD 236 (299)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf 99999999999999964998980899944887665555641447888999999885499758897943776541105789
Q ss_pred EEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 899985120225555414477279992087647558875522213368668389999999999
Q gi|254780397|r 267 VAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAA 329 (343)
Q Consensus 267 ~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~ 329 (343)
+||||||||||||||+++|++|||+|+|||||||||||||||||||||+||+.||++||++|+
T Consensus 237 ~v~amYHDQglip~K~~~f~~~vn~t~GLp~irtS~dHGta~diagk~~A~~~s~~~Ai~~Aa 299 (299)
T pfam04166 237 AVLAMYHDQGLIPLKYLGFDRGVNVTLGLPIIRTSVDHGTAFDIAGKGKADPGSLIAALKLAA 299 (299)
T ss_pred EEEEECCCCCCHHHHHCCCCCCEEEECCCCEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHC
T ss_conf 999805244207665335687379944899237789987056660789899699999999759
No 15
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy . PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic . In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised , , . This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process.
Probab=100.00 E-value=0 Score=770.29 Aligned_cols=320 Identities=36% Similarity=0.600 Sum_probs=304.4
Q ss_pred CCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCE-EEECCCCC
Q ss_conf 83899718987747899999842852324898999939999999999818997447538610111267853-76103332
Q gi|254780397|r 5 LPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKAL-PIISSPCG 83 (343)
Q Consensus 5 ~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~~~i-~i~~~~~~ 83 (343)
+||+||+|||+|||||+++|.- +++...+.+|+++|.++|.++++.++.....+.++..+++....-.+ -+.+....
T Consensus 2 kki~It~GdpaGiGpeLilk~~--k~~~~~~e~v~~~d~~lL~~a~~llg~~l~~k~~~~~~~A~~~tag~~~~~p~~L~ 79 (325)
T TIGR00557 2 KKIAITLGDPAGIGPELILKLA--KRVEEKVELVVLADEKLLEEAAKLLGLKLELKKLEKVEEAKERTAGVLLLAPVALK 79 (325)
T ss_pred CEEEEECCCCCCCCHHHHHHHH--HHHHHCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 5478616875561688999987--77510331588656789999998617721032158775310456777876434430
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 20013553100000246778877664301234304432234477764101325647899998342358866521123322
Q gi|254780397|r 84 AKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGP 163 (343)
Q Consensus 84 ~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Mll~~~ 163 (343)
.+++.|+++.+||.|++++|.+|++.|.+|+++||+|+||||-+|++||+.|.||||||+++++.+ +++|||+++
T Consensus 80 ~pvt~g~vs~~sG~y~ve~larAc~~a~~ge~~gi~T~PinK~~~~~Agipf~GhTeFl~~rs~~k-----~~~MMl~~e 154 (325)
T TIGR00557 80 APVTAGKVSVESGKYAVESLARACEDALSGEVDGILTLPINKLVIKKAGIPFVGHTEFLKKRSKAK-----KVVMMLASE 154 (325)
T ss_pred CCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHCCCCCCCCCHHHHHHHHCCC-----CEEEEECCC
T ss_conf 544466100101268999999998764125711565065115788606897443508999852486-----278761154
Q ss_pred CCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH--
Q ss_conf 112665304531333432010245678889899999853134567079996366544531000012102445888642--
Q gi|254780397|r 164 QLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLR-- 241 (343)
Q Consensus 164 ~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~-- 241 (343)
+|+|+|+||||||++|++.|+++.|.+++.+++++++..||+..|||-||||||||||.|.||+||+|.|+|||+++|
T Consensus 155 kL~V~L~ttH~PL~dv~~~i~~~~l~k~~~~~~k~~~~KfG~~EP~i~VcGlNPHAGE~G~~G~EEie~Iipa~~e~~qt 234 (325)
T TIGR00557 155 KLKVALLTTHVPLKDVADLIKKEALLKVVLLLRKELREKFGKAEPLIKVCGLNPHAGEEGELGREEIEEIIPAVEEAKQT 234 (325)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 20245421577756576440388999999999898886532117714773368877888998851356789999986544
Q ss_pred HCCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHH
Q ss_conf 15876434555112100022366768999851202255554144772799920876475588755222133686683899
Q gi|254780397|r 242 NDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESL 321 (343)
Q Consensus 242 ~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~ 321 (343)
.+|+.+.||+||||+|.+..++.-|++|||||||||+|||+++||+|||+||||||+||||||||||||||||+|+.+|+
T Consensus 235 ~~g~k~~GPLpaD~aF~p~~~~~~d~~l~MyHD~GL~plK~l~FdegvN~tLglPfiRTS~DHGTA~diA~~nKA~~~S~ 314 (325)
T TIGR00557 235 KEGIKLVGPLPADSAFAPKKREIADVYLAMYHDQGLAPLKALAFDEGVNVTLGLPFIRTSVDHGTAFDIAYKNKADEKSY 314 (325)
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCCEEEEECCCHHCCCCCCHHHHHHHCCCCCCCCHH
T ss_conf 08456437888441347875457866898325666067776434771466408761013786104788620134563008
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780397|r 322 VSALKIAAQL 331 (343)
Q Consensus 322 ~~ai~~a~~~ 331 (343)
++|++++.+|
T Consensus 315 l~Al~l~~~l 324 (325)
T TIGR00557 315 LNALKLLADL 324 (325)
T ss_pred HHHHHHHHHH
T ss_conf 9999999983
No 16
>PRK11890 phosphate acetyltransferase; Provisional
Probab=99.30 E-value=1.8e-09 Score=77.32 Aligned_cols=265 Identities=19% Similarity=0.189 Sum_probs=157.8
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCEEEECCCCC
Q ss_conf 88389971898774789999984285232489899993999999999981899744753861011126785376103332
Q gi|254780397|r 4 FLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALPIISSPCG 83 (343)
Q Consensus 4 ~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~~~i~i~~~~~~ 83 (343)
.+|+++.-++ . |-++++...-.-...+.||++|++..++..++.+++++.- +.+++.+.
T Consensus 22 pkrvava~ae----d-~~vL~Aa~~a~~eGia~PILvG~~~~I~~~a~~~gldl~~---------------~eIid~~~- 80 (312)
T PRK11890 22 PLPTAVVHPC----D-ESSLRGAVEAAQLGLITPILVGPRARIRAVAEECGLDLSD---------------YQIVDAPH- 80 (312)
T ss_pred CCEEEEECCC----C-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCC---------------CEEECCCC-
T ss_conf 9629998479----9-7999999999986983799989999999999985999788---------------86878998-
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCC--CCCCCCCCC
Q ss_conf 200135531000002467788776643012343044322344777641013256478999983423588--665211233
Q gi|254780397|r 84 AKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGI--TFKPVMMLS 161 (343)
Q Consensus 84 ~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~--~~~~~Mll~ 161 (343)
.-++-+.|++++++|++|+++.|-++-..+..+ ++....+...+. +.-.+|.+-
T Consensus 81 ---------------~~~~a~~av~lv~~g~Ad~lmkG~~~t~~~l~~---------vl~~~~glr~~~~vS~v~~m~~~ 136 (312)
T PRK11890 81 ---------------SHAAAAKAVELVRAGEAEALMKGSLHTDELMSA---------VVARDTGLRTERRISHVFVMDVP 136 (312)
T ss_pred ---------------CHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH---------HHHHCCCCCCCCEEEEEEEEEEC
T ss_conf ---------------289999999983378886898678762567666---------54103676788647899999736
Q ss_pred CCCCEEEEECCCCCHHHHHHHC--CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 2211266530453133343201--02456788898999998531345670799963665445310000121024458886
Q gi|254780397|r 162 GPQLRTVPVTIHIPIADICRIL--STKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITY 239 (343)
Q Consensus 162 ~~~L~V~l~TtHiPLk~V~~~i--t~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~ 239 (343)
+.+ ++.++ .|..=.+ |-+.+.+-+....+..+ .||+..||+|++. +.|.|.-..+....-.-+.+.
T Consensus 137 ~~~-k~l~~------tD~~vni~P~~eqla~Ia~~aa~~a~-~~Gi~~PkVA~LS----~se~~s~~~pst~da~~l~k~ 204 (312)
T PRK11890 137 TYP-KPLII------TDAAVNIAPTLEDKADIVQNAIDLAH-ALGEDEPRVAILS----AVETVNPKIPSTLDAAALCKM 204 (312)
T ss_pred CCC-CEEEE------ECCEEEECCCHHHHHHHHHHHHHHHH-HHCCCCCEEEEEE----EECCCCCCCCHHHHHHHHHHH
T ss_conf 888-34999------42657758799999999999999999-8389986289996----003678876107999999998
Q ss_pred HHH---CCCCCCCCCCCHHHEECCCC----------CCCCEEEEEECCHHHHHHHHHCCCCE---EEEEEEC--CEEEEC
Q ss_conf 421---58764345551121000223----------66768999851202255554144772---7999208--764755
Q gi|254780397|r 240 LRN---DNKNIIGPLPADSMFHHSAR----------QCYDVAICMYHDQALIPIKTLDFNQT---VNITLGL--PFVRTS 301 (343)
Q Consensus 240 ~~~---~g~~v~GP~paDt~F~~~~~----------~~~D~vlamYHDQglip~K~l~f~~~---Vn~t~GL--p~irtS 301 (343)
+++ .+..++||+.+|+++.+... ++-|+.|.===|-|-|-.|++-+-.| +-+.+|+ |++-+|
T Consensus 205 ~~r~~~~~~~vDGelq~D~Al~~~~a~~K~~~s~vaG~AnvLIfPnLeagNI~yK~l~~l~ga~a~Gil~G~~~PV~~~S 284 (312)
T PRK11890 205 ADRGQITGAILDGPLAFDNAISPEAARIKGIVSPVAGDADILLVPDLEAGNMLAKQLTFLAGADAAGIVLGARVPIILTS 284 (312)
T ss_pred HHHHCCCCCEECCCHHHHHHHCHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEECC
T ss_conf 76514888742573188887389999973447866887988991882787899999998459839976650688878789
Q ss_pred CCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 887552221336866838999999999999985200
Q gi|254780397|r 302 PDHGTAFDIAGSSLTQEESLVSALKIAAQLGYQKNL 337 (343)
Q Consensus 302 pdHGTafdiagk~~a~~~s~~~ai~~a~~~~~~~~~ 337 (343)
. -.+.++.++++-+|+-.|+.||-
T Consensus 285 R------------~~s~~~~vn~~Ala~v~Aq~~k~ 308 (312)
T PRK11890 285 R------------ADSVRTRLASCAVAALVANARRA 308 (312)
T ss_pred C------------CCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9------------88899999999999999987411
No 17
>pfam01515 PTA_PTB Phosphate acetyl/butaryl transferase. This family contains both phosphate acetyltransferase and phosphate butaryltransferase. These enzymes catalyse the transfer of an acetyl or butaryl group to orthophosphate.
Probab=99.08 E-value=9.6e-09 Score=72.91 Aligned_cols=273 Identities=14% Similarity=0.075 Sum_probs=164.7
Q ss_pred CCCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCC-EEECCCCHHCCCCCCCEEEECCC
Q ss_conf 88838997189877478999998428523248989999399999999998189974-47538610111267853761033
Q gi|254780397|r 3 EFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVP-LYETDCKNAVSIFKKALPIISSP 81 (343)
Q Consensus 3 k~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~-i~~i~~~~~~~~~~~~i~i~~~~ 81 (343)
+.++|++.-|+ -+.+ ++|...-.-...+.||++|+++.++..++.+++++. +..+++.+.... +.+...+
T Consensus 13 ~~krIvf~ege----d~rv-l~Aa~~~~~egi~~PILvG~~~~I~~~~~~~gl~~~~~eIid~~~~~~~-~~y~~~~--- 83 (319)
T pfam01515 13 AKKRIVFPEGE----DERV-LKAAKELLEEGIADPILIGNEIEIKAKALGLGLDLSGIEIVDPETSPRD-EEYADEF--- 83 (319)
T ss_pred CCCEEEEECCC----CHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEECCCCCHHH-HHHHHHH---
T ss_conf 89989995879----9799-9999999986992799988999999999976989667789888887679-9999999---
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHH-HHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 3220013553100000246778877664301234304432234477-764101325647899998342358866521123
Q gi|254780397|r 82 CGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFL-LYQEKFKFPGHTEFLAELAKKNTGITFKPVMML 160 (343)
Q Consensus 82 ~~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~-l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Mll 160 (343)
....-.-|..-..+-+..-+....|+.++..|++|++|+|-++-.. ...+..+-.| .......-..+++|
T Consensus 84 ~~~~~rkG~~~~~a~~~~~~~~~~aa~mv~~G~aD~lv~G~~~tt~~~lr~~l~~ig---------~~~~~~~~s~~~~m 154 (319)
T pfam01515 84 YELRKHKGMTPEIAREIVRDPTYFAAMLVKLGEADGLVSGAVNTTADTLRPALQIIK---------TLPGVKIVSSVFIM 154 (319)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHC---------CCCCCCEEEEEEEE
T ss_conf 999723899999999999766999999997789887820898882999999999865---------78998459999987
Q ss_pred CCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 32211266530453133343201024567888989999985313456707999636654453100001210244588864
Q gi|254780397|r 161 SGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYL 240 (343)
Q Consensus 161 ~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~ 240 (343)
..++=.+...-++|-. .=|.+.+.+-+....+..+ .||...||+|++.. .|.|.--.|+.+.+.-|++.+
T Consensus 155 ~~~~~~lf~aD~~Vn~-----~P~~eqla~Ia~~aa~~~~-~lg~~~PkVA~LS~----S~~gs~~~~~~~~~~~a~~~~ 224 (319)
T pfam01515 155 LLPDRLLFFTDCAVNP-----NPTAEELAEIALNAAKTAK-ALGNIEPRVAMLSY----STFGSGKGESVEKVREATKIA 224 (319)
T ss_pred EECCCEEEEEECCCCC-----CCCHHHHHHHHHHHHHHHH-HHCCCCCEEEEEEC----CCCCCCCCCHHHHHHHHHHHH
T ss_conf 7179539997063666-----9899999999999999999-84589970455420----256799995289999999999
Q ss_pred HHC--CCCCCCCCCCHHHEECCCC----------CCCCEEEEEECCHHHHHHHHHCCCCEEE----EEEE--CCEEEECC
Q ss_conf 215--8764345551121000223----------6676899985120225555414477279----9920--87647558
Q gi|254780397|r 241 RND--NKNIIGPLPADSMFHHSAR----------QCYDVAICMYHDQALIPIKTLDFNQTVN----ITLG--LPFVRTSP 302 (343)
Q Consensus 241 ~~~--g~~v~GP~paDt~F~~~~~----------~~~D~vlamYHDQglip~K~l~f~~~Vn----~t~G--Lp~irtSp 302 (343)
++. .+.++||+..|+++.+..+ ++-|+.+.-==|-|-|..|++-.-.+.. +-+| .|+.-+|.
T Consensus 225 ~~~~pd~~vdGemq~D~Al~~~~~~~k~p~s~l~G~AnvLIfPnl~agNI~yK~~~~l~~~~~iGpil~G~~~Pv~~~sr 304 (319)
T pfam01515 225 KEKAPDLVVDGELQLDAAIVEEVAAQKAPDSPVAGKANVLVFPDLEAGNIGYKIAQRLAGAEAIGPILQGLAKPVNDLSR 304 (319)
T ss_pred HCCCCCCEECCCCHHHHHCCHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEECHHHHCCCCCEEECCC
T ss_conf 73699963368630777649999997489998789888899289488899999999845986972355467997797899
Q ss_pred C
Q ss_conf 8
Q gi|254780397|r 303 D 303 (343)
Q Consensus 303 d 303 (343)
.
T Consensus 305 ~ 305 (319)
T pfam01515 305 G 305 (319)
T ss_pred C
T ss_conf 8
No 18
>PRK05805 phosphate butyryltransferase; Validated
Probab=99.03 E-value=4.5e-08 Score=68.88 Aligned_cols=263 Identities=18% Similarity=0.180 Sum_probs=146.4
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCEEEECCCCC
Q ss_conf 88389971898774789999984285232489899993999999999981899744753861011126785376103332
Q gi|254780397|r 4 FLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALPIISSPCG 83 (343)
Q Consensus 4 ~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~~~i~i~~~~~~ 83 (343)
.|+|++.-||= |-+++|.....-...+.||++|+++.++..++.+++++.- +.+++....
T Consensus 17 pkrIv~~eg~d-----~rvl~AA~~~~~~gia~pILiG~~~~I~~~~~~~gl~l~~---------------~eiid~~~~ 76 (301)
T PRK05805 17 PKTISVAVAQD-----EPVLEAVKEAKELGIANAILVGDEEKIKEIAKEIGMDLED---------------FEIIDEKDN 76 (301)
T ss_pred CCEEEEECCCC-----HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCC---------------CEEECCCCH
T ss_conf 89699908999-----7999999999987997999985999999999987999666---------------777356462
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 20013553100000246778877664301234304432234477764101325647899998342358866521123322
Q gi|254780397|r 84 AKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGP 163 (343)
Q Consensus 84 ~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Mll~~~ 163 (343)
-+.-..|+.++..|++|++++|-++......+- |....+...+..-..+++|...
T Consensus 77 ----------------~~~~~~a~~lv~~G~aD~lv~G~~~t~~~lr~~---------l~~~~g~~~g~~~s~~~~~~~~ 131 (301)
T PRK05805 77 ----------------KKAALKAVELVSSGKADMVMKGLVDTATFLRAV---------LNKEIGLRTGKTMSHVAVFEVP 131 (301)
T ss_pred ----------------HHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHH---------HHHHCCCCCCCCEEEEEEEEEC
T ss_conf ----------------999999999986787467863875543899998---------5101477788717899999962
Q ss_pred CC-EEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 11-26653045313334320102456788898999998531345670799963665445310000121024458886421
Q gi|254780397|r 164 QL-RTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRN 242 (343)
Q Consensus 164 ~L-~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~ 242 (343)
.. ++ ++-+...+..-| |.+.+.+-.....+..+ .||++.||+|++. +.|.|.-+.++...-.-+.+..++
T Consensus 132 ~~~~~-l~~aD~~vn~~P---~~e~la~Ia~~aa~~a~-~lgie~PrVAlLS----~s~~~s~~~~s~~da~~~~~~~~~ 202 (301)
T PRK05805 132 KYDRL-LFLTDAAFNIYP---DLKEKIDIINNAVTVAH-AIGIEVPKVAPIC----AVEVVNPKMPATLDAALLSKMSDR 202 (301)
T ss_pred CCCCE-EEEECCCCCCCC---CHHHHHHHHHHHHHHHH-HHCCCCCEEEEEE----EECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 89816-999456200093---99999999999999999-8289998599993----004778887307999999999874
Q ss_pred ---CCCCCCCCCCCHHHEECCC----------CCCCCEEEEEECCHHHHHHHHHCCCCEE---EEEEEC--CEEEECCCC
Q ss_conf ---5876434555112100022----------3667689998512022555541447727---999208--764755887
Q gi|254780397|r 243 ---DNKNIIGPLPADSMFHHSA----------RQCYDVAICMYHDQALIPIKTLDFNQTV---NITLGL--PFVRTSPDH 304 (343)
Q Consensus 243 ---~g~~v~GP~paDt~F~~~~----------~~~~D~vlamYHDQglip~K~l~f~~~V---n~t~GL--p~irtSpdH 304 (343)
.+..++||+..|+++.+.. .++-|+.|.=-=|-|-|..|++-+-.+- -+-.|| |+.-+|.+
T Consensus 203 ~~~~~~~vDGelq~D~Al~~e~~~~k~~~s~vaG~ANvLIfPnL~agNI~yKl~q~~~ga~~~Gil~G~~~Pv~~lSR~- 281 (301)
T PRK05805 203 GQIKGCIVDGPFALDNAISEEAAKHKGIDGPVAGKADILLVPNIEAGNVMYKTLTYFADCKNGGLLVGTSAPVVLTSRA- 281 (301)
T ss_pred CCCCCCEECCCCHHHHHHCHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEECCCC-
T ss_conf 1388874567624777738999985189997688788898688578899999999966982885653279888769998-
Q ss_pred CCCHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 5522213368668389999999999999
Q gi|254780397|r 305 GTAFDIAGSSLTQEESLVSALKIAAQLG 332 (343)
Q Consensus 305 GTafdiagk~~a~~~s~~~ai~~a~~~~ 332 (343)
++.+..++++-+|.=-|
T Consensus 282 -----------~s~~di~n~~aiaal~A 298 (301)
T PRK05805 282 -----------DSHETKLNSIALAALVA 298 (301)
T ss_pred -----------CCHHHHHHHHHHHHHHH
T ss_conf -----------88999999999999997
No 19
>PRK09653 eutD phosphotransacetylase; Reviewed
Probab=99.01 E-value=6.4e-08 Score=67.98 Aligned_cols=287 Identities=16% Similarity=0.155 Sum_probs=168.6
Q ss_pred CCCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCC-EEECCCCHHCCCCCCCEEEECCC
Q ss_conf 88838997189877478999998428523248989999399999999998189974-47538610111267853761033
Q gi|254780397|r 3 EFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVP-LYETDCKNAVSIFKKALPIISSP 81 (343)
Q Consensus 3 k~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~-i~~i~~~~~~~~~~~~i~i~~~~ 81 (343)
+.++|++.-|| -+++ ++|...-.-...+.||++|+++.++..++.+++++. +..+++.+.... ......+
T Consensus 14 ~~krIv~aege----d~rv-L~Aa~~~~~~gi~~pILvG~~~~I~~~~~~~gl~l~~~eIidp~~~~~~-~~~~~~~--- 84 (324)
T PRK09653 14 KKKKIVLPEGE----DERV-LEAAKRLQKEGLVEPILLGNPEEIREKALELGVDLDGIEIIDPHTYPKL-EEFAEAF--- 84 (324)
T ss_pred CCCEEEEECCC----CHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEECCCCCHHH-HHHHHHH---
T ss_conf 89989993879----9899-9999999986995899977999999999976999657589789985899-9999999---
Q ss_pred CCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHCCCCCEEEECHHHHH--HHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 322001355310000-024677887766430123430443223447--77641013256478999983423588665211
Q gi|254780397|r 82 CGAKIVTGTPNPQTA-SSTIANIEKAVSLTLSGQALAIVTNPIAKF--LLYQEKFKFPGHTEFLAELAKKNTGITFKPVM 158 (343)
Q Consensus 82 ~~~~~~~G~~s~~~g-~~~~~sl~~A~~l~~~g~~~alVT~PInK~--~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~M 158 (343)
.+..-|+.+.+.+ +...+-...|.-++..|++|++|+|=++.. .+..+ .+- +.-..+.+ .-..++
T Consensus 85 --~~~r~~k~~~~~A~~~~~~~~~~aa~mv~~G~aD~lv~G~~~~t~~~lr~~-l~i------ig~~~g~~---~vS~~~ 152 (324)
T PRK09653 85 --VERRKGKATEEDARKILKDPNYFGTMLVKMGKADGMVSGAIHSTADTLRPA-LQI------IKTKPGVK---TVSSIF 152 (324)
T ss_pred --HHHHCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCEEECCCCCCCHHHHHHH-HHH------HCCCCCCC---EEEEEE
T ss_conf --998568898999999874742899999867998758526102019999999-988------42589986---036899
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 23322112665304531333432010245678889899999853134567079996366544531000012102445888
Q gi|254780397|r 159 MLSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAIT 238 (343)
Q Consensus 159 ll~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~ 238 (343)
+|..++-...+.-+++-.. =|.+.+.+-+....+..+ .||+. ||+|++.. .+.|.--.+..+-...|.+
T Consensus 153 ~m~~~~~~l~~tD~avn~~-----P~~eqla~Ia~~a~~~~~-~lG~e-PrVA~LS~----S~~gs~~~~s~~~~~~A~~ 221 (324)
T PRK09653 153 IMVKGDERYIFADCAVNPN-----PTAQQLAEIAINSAETAK-AFGIE-PKVAMLSF----STKGSAKGPEVDKVQEATE 221 (324)
T ss_pred EEECCCCEEEEECCCCCCC-----CCHHHHHHHHHHHHHHHH-HCCCC-CCEEEEEC----CCCCCCCCCCHHHHHHHHH
T ss_conf 9961785599953765679-----899999999999999999-85999-83886100----1047988700589999999
Q ss_pred HHHHC--CCCCCCCCCCHHHEECCCC----------CCCCEEEEEECCHHHHHHHHHCC-CCEEE---EEEEC--CEEEE
Q ss_conf 64215--8764345551121000223----------66768999851202255554144-77279---99208--76475
Q gi|254780397|r 239 YLRND--NKNIIGPLPADSMFHHSAR----------QCYDVAICMYHDQALIPIKTLDF-NQTVN---ITLGL--PFVRT 300 (343)
Q Consensus 239 ~~~~~--g~~v~GP~paDt~F~~~~~----------~~~D~vlamYHDQglip~K~l~f-~~~Vn---~t~GL--p~irt 300 (343)
.+++. ++.|+||+..|.++.+..+ ++-|+.|.-==|-|-|..|++-+ ..+.. +-.|+ |+.-+
T Consensus 222 ~~~~~~p~~~vdGelq~D~Al~~~~a~~k~p~s~vaG~AnvLI~Pnl~agNi~yK~l~~l~~a~~~Gpil~G~~~Pv~~~ 301 (324)
T PRK09653 222 IAKELAPDLEIDGELQFDAAFVPEVAAQKAPGSPVAGKANVFVFPSLEAGNIGYKIAQRLGGFEAVGPILQGLNKPVNDL 301 (324)
T ss_pred HHHHHCCCCEECCCCHHHHHCCHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEECHHHHCCCCCEEEC
T ss_conf 99966899742474106665399999851899976898878994881788999999999579838744553778887878
Q ss_pred CCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 588755222133686683899999999999998
Q gi|254780397|r 301 SPDHGTAFDIAGSSLTQEESLVSALKIAAQLGY 333 (343)
Q Consensus 301 SpdHGTafdiagk~~a~~~s~~~ai~~a~~~~~ 333 (343)
|.+ ++.+..++.+-+|+-=++
T Consensus 302 sr~------------~sv~di~n~~aiaa~~aq 322 (324)
T PRK09653 302 SRG------------CSVEDIYNLALITAAQAQ 322 (324)
T ss_pred CCC------------CCHHHHHHHHHHHHHHHH
T ss_conf 998------------889999999999999961
No 20
>PRK07742 phosphate butyryltransferase; Validated
Probab=98.91 E-value=3.7e-08 Score=69.38 Aligned_cols=260 Identities=16% Similarity=0.169 Sum_probs=150.2
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCEEEECCCCC
Q ss_conf 88389971898774789999984285232489899993999999999981899744753861011126785376103332
Q gi|254780397|r 4 FLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALPIISSPCG 83 (343)
Q Consensus 4 ~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~~~i~i~~~~~~ 83 (343)
+++|++.-||= |-+++|.....-...+.||++|+++.++...+.++++... .+.+++...
T Consensus 15 ~k~I~~aeged-----~rvL~Aa~~~~~egia~PILvG~~~~I~~~~~~~~l~~~~--------------~~~i~~~~~- 74 (299)
T PRK07742 15 KKTVAVAVAED-----EEVIEAVAKAIELQLARFRLYGNQEKIMGMLQEHSLQTSE--------------HIEIIHAQS- 74 (299)
T ss_pred CCEEEECCCCC-----HHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHCCCCCCC--------------CEEECCCCC-
T ss_conf 98699828999-----7999999999986996899981999999999986999778--------------827718999-
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCC--CC
Q ss_conf 2001355310000024677887766430123430443223447776410132564789999834235886652112--33
Q gi|254780397|r 84 AKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMM--LS 161 (343)
Q Consensus 84 ~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Ml--l~ 161 (343)
.-++.+.|+.++..|++|++|+|=++...+..+ .|....+...+..-..+++ +.
T Consensus 75 ---------------~~~~~~~a~~~v~~g~aD~lv~G~~~t~~~l~~---------~l~~~~gl~~~~~~s~v~~~~~p 130 (299)
T PRK07742 75 ---------------SAEAAELAVKAVRNGEADVLMKGNVPTANILKA---------VLNKEWGLRKGSVLSHVAAFEVP 130 (299)
T ss_pred ---------------HHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHH---------HHCCCCCCCCCCEEEEEEEEEEC
T ss_conf ---------------799999999997579785992477675211063---------43513587788858999999841
Q ss_pred CCCCEEEEECCCCCHHHHHHHC--CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 2211266530453133343201--02456788898999998531345670799963665445310000121024458886
Q gi|254780397|r 162 GPQLRTVPVTIHIPIADICRIL--STKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITY 239 (343)
Q Consensus 162 ~~~L~V~l~TtHiPLk~V~~~i--t~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~ 239 (343)
+.+ ++..+ .|..=.+ |.+.+.+-+....+..+ .||+..||+|++.- .|.+.-..++... .-++.+
T Consensus 131 ~~~-~~l~~------~D~aVni~P~~eqla~Ia~~aa~~a~-~~gie~PkVAmLS~----~~~~~~~~~~~~~-a~~~~~ 197 (299)
T PRK07742 131 NYD-RLIFV------TDAAMNIAPDLTQKAAIIQNAVEVAR-AIGIDLPKVAPLAA----VEVVNPAMQATID-AAALTQ 197 (299)
T ss_pred CCC-CEEEE------ECCEEECCCCHHHHHHHHHHHHHHHH-HHCCCCCCEEEEEE----ECCCCCCCCCHHH-HHHHHH
T ss_conf 788-35998------30557528899999999999999999-84799870203532----1357988731799-999999
Q ss_pred H-HH---CCCCCCCCCCCHHHEECCC----------CCCCCEEEEEECCHHHHHHHHHCCCCEEEE---EE--ECCEEEE
Q ss_conf 4-21---5876434555112100022----------366768999851202255554144772799---92--0876475
Q gi|254780397|r 240 L-RN---DNKNIIGPLPADSMFHHSA----------RQCYDVAICMYHDQALIPIKTLDFNQTVNI---TL--GLPFVRT 300 (343)
Q Consensus 240 ~-~~---~g~~v~GP~paDt~F~~~~----------~~~~D~vlamYHDQglip~K~l~f~~~Vn~---t~--GLp~irt 300 (343)
. ++ .+..|+||+.+|+++.+.. .++-|+.+.=-=|-|-|..|++-+..+..+ -. .-|+.-+
T Consensus 198 ~~~r~~~~d~~vDGelq~D~Al~~~~~~~k~~~s~v~G~ANvLIfPnL~agNI~yK~l~~~~ga~iGpiL~G~~~Pv~~l 277 (299)
T PRK07742 198 MNRRGQIKNCVVDGPLALDNAVSQIAAEHKGIVSDVAGKADILLVPTIEAGNVLYKSLVYFADAKVGAMIAGAKAPIVLT 277 (299)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCEECEEECCCCCEEEC
T ss_conf 98774366761467427777636999975289997788787899078278789999999846995404575278886868
Q ss_pred CCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 58875522213368668389999999999999
Q gi|254780397|r 301 SPDHGTAFDIAGSSLTQEESLVSALKIAAQLG 332 (343)
Q Consensus 301 SpdHGTafdiagk~~a~~~s~~~ai~~a~~~~ 332 (343)
|.. ++.++.++++-+|+--|
T Consensus 278 SR~------------~s~~~ivn~~Alav~~A 297 (299)
T PRK07742 278 SRA------------DSAETKLYSLALAICTA 297 (299)
T ss_pred CCC------------CCHHHHHHHHHHHHHHH
T ss_conf 999------------88899999999999985
No 21
>COG0280 Pta Phosphotransacetylase [Energy production and conversion]
Probab=98.88 E-value=1.3e-07 Score=66.03 Aligned_cols=290 Identities=15% Similarity=0.156 Sum_probs=179.1
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCE-EECCCCHHCCCCCCCEEEECCCC
Q ss_conf 88389971898774789999984285232489899993999999999981899744-75386101112678537610333
Q gi|254780397|r 4 FLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPL-YETDCKNAVSIFKKALPIISSPC 82 (343)
Q Consensus 4 ~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i-~~i~~~~~~~~~~~~i~i~~~~~ 82 (343)
.++|+..-|+ -|=++++.....-.....+|++|++..++..++.+++++.- ..+++.........+...+
T Consensus 13 ~kriv~~Ege-----d~rvl~Aa~~~~~~g~~~~ilvg~~~~i~~~~~~~gl~l~~~eiidp~~~~~~~~~y~~~~---- 83 (327)
T COG0280 13 PKRIVLPEGE-----EERVLRAAQVLAKEGLAKPILVGRPEEIEEVAKALGLDLDGIEIINPELDPERFEEYVDRL---- 83 (327)
T ss_pred CCEEEECCCC-----CHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHH----
T ss_conf 8769816874-----3799999999986597752897489999999998354656447867222706689999999----
Q ss_pred CCCCCCCCCCCCCCHHHH--HHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCC-CCC
Q ss_conf 220013553100000246--77887766430123430443223447776410132564789999834235886652-112
Q gi|254780397|r 83 GAKIVTGTPNPQTASSTI--ANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKP-VMM 159 (343)
Q Consensus 83 ~~~~~~G~~s~~~g~~~~--~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~-~Ml 159 (343)
-...+..-.+.+.++-.+ +....|+.+...|++||||+|-++-.. -|-...-+.-+...|..--. +++
T Consensus 84 ~e~~k~kG~t~~~a~~~~~~d~~~~a~~mv~~g~aD~~v~G~~~tt~---------~~lr~~lqii~~~pG~~~~s~v~i 154 (327)
T COG0280 84 YELRKRKGVTPEDAQELVREDPTVFAAMMVALGEADGLVSGAVHTTA---------DTLRPALQIIGTRPGVSLVSSVFI 154 (327)
T ss_pred HHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHH---------HHHHHHHHHHCCCCCCEEEEEEEE
T ss_conf 99964379999999988544808999999975988789755766779---------899889987088898766787899
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 33221126653045313334320102456788898999998531345670799963665445310000121024458886
Q gi|254780397|r 160 LSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITY 239 (343)
Q Consensus 160 l~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~ 239 (343)
|..++=.+...-+++- -.-|.+.+.+-.....++.+ .||+ .||+|+++. .+.|.-..|+.+-..-|.+.
T Consensus 155 m~~~~~~l~~~D~avn-----~~PtaeeladIa~~sa~~a~-~fgi-~PkVAlLS~----St~gs~~~~~~~kv~ea~~i 223 (327)
T COG0280 155 MLLPDGTLFFADCAVN-----PDPTAEELADIAENAAETAR-RFGI-EPKVALLSY----STFGSGKGPSTDKVREATKI 223 (327)
T ss_pred EEECCCEEEEEECCCC-----CCCCHHHHHHHHHHHHHHHH-HHCC-CCEEEEEEE----ECCCCCCCCCHHHHHHHHHH
T ss_conf 9937960899713357-----89799999999999999999-8089-870689975----42788888107999999999
Q ss_pred HHHC---CCCCCCCCCCHHHEECC----------CCCCCCEEEEEECCHHHHHHHHHC-CCCEEE---EEEE--CCEEEE
Q ss_conf 4215---87643455511210002----------236676899985120225555414-477279---9920--876475
Q gi|254780397|r 240 LRND---NKNIIGPLPADSMFHHS----------ARQCYDVAICMYHDQALIPIKTLD-FNQTVN---ITLG--LPFVRT 300 (343)
Q Consensus 240 ~~~~---g~~v~GP~paDt~F~~~----------~~~~~D~vlamYHDQglip~K~l~-f~~~Vn---~t~G--Lp~irt 300 (343)
+++. ...++||+..|.+|... ..++-|++|--==+-|-|..|++- +.+++. +..| -|+.-+
T Consensus 224 ~~~~~~~dl~vDGelq~DaA~~~~va~~k~p~s~vaG~ANvlVfP~LeagNI~yK~lq~~~~a~avGPil~G~~kPV~~l 303 (327)
T COG0280 224 LRERAPPDLEVDGELQFDAALVEKVAAKKAPDSPLAGSANVLVFPDLEAGNIGYKLLQRLGGALAVGPILQGLAKPVNDL 303 (327)
T ss_pred HHHCCCCCCEECCCCCHHHHCCHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCEECHHHHCCCCCHHHC
T ss_conf 97169756666067524355399999953899976787778974882177789999999537855600242576653235
Q ss_pred CCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 5887552221336866838999999999999985
Q gi|254780397|r 301 SPDHGTAFDIAGSSLTQEESLVSALKIAAQLGYQ 334 (343)
Q Consensus 301 SpdHGTafdiagk~~a~~~s~~~ai~~a~~~~~~ 334 (343)
|+. ++.+-..+.+-+++--+.+
T Consensus 304 Srg------------~sv~dIvn~~alaa~qa~~ 325 (327)
T COG0280 304 SRG------------ASVEDIVNMAALAAVQAQT 325 (327)
T ss_pred CCC------------CCHHHHHHHHHHHHHHHHC
T ss_conf 888------------9889999999999998623
No 22
>PRK12861 malic enzyme; Reviewed
Probab=98.75 E-value=2.1e-07 Score=64.85 Aligned_cols=265 Identities=15% Similarity=0.203 Sum_probs=164.0
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCC----EEECCCCHHCCCCCCCEEEEC
Q ss_conf 8838997189877478999998428523248989999399999999998189974----475386101112678537610
Q gi|254780397|r 4 FLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVP----LYETDCKNAVSIFKKALPIIS 79 (343)
Q Consensus 4 ~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~----i~~i~~~~~~~~~~~~i~i~~ 79 (343)
.|+|++.-||= |=+++|...-.-...+.||++|+++.++..++.+++++. +..+++.+.... ..+...+
T Consensus 446 pKRIVFaEGEd-----eRVLRAAq~~~dEGia~PILIGr~e~I~~~i~~lGL~L~~~~dieIiDP~~s~r~-~~Ya~~y- 518 (762)
T PRK12861 446 KARIVFTEGED-----ERVLRAVQVIVDEKLARPILVGRPEVLLARIERFGLRLRLGQDVEVTNPEYDERF-PQYWTTY- 518 (762)
T ss_pred CCEEEECCCCC-----HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH-HHHHHHH-
T ss_conf 74699248877-----6899999999974984289972999999999981999665666530178865048-9999999-
Q ss_pred CCCCCCCCCCCCCCCCCH-HHHHH-HHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCC-CC
Q ss_conf 333220013553100000-24677-8877664301234304432234477764101325647899998342358866-52
Q gi|254780397|r 80 SPCGAKIVTGTPNPQTAS-STIAN-IEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITF-KP 156 (343)
Q Consensus 80 ~~~~~~~~~G~~s~~~g~-~~~~s-l~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~-~~ 156 (343)
+...-.-| .+.+.++ ...+- --.|.-++..|.+||||||=.. .|..|-+..-+.-+.+.+..- ..
T Consensus 519 --~elrqRKG-vt~~~Ar~~vr~~~n~FgAmMV~~GdADgMV~G~t~---------~ya~~LrpalqVIG~~pg~~~vs~ 586 (762)
T PRK12861 519 --WELRCRDG-ISKEMARVEMRRRLTLIGAMMVRLGDADGMICGTVG---------EYHNHLRFVDEVIGRKPGASTYAA 586 (762)
T ss_pred --HHHHHCCC-CCHHHHHHHHHCCCCCHHHHHHHCCCCCEEECCCCC---------CHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf --99975279-989999999735851067879873887778437887---------709999999996188999844788
Q ss_pred CCCCCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHH
Q ss_conf 11233221126653045313334320102456788898999998531345670799963665445310000121024458
Q gi|254780397|r 157 VMMLSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPA 236 (343)
Q Consensus 157 ~Mll~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~Pa 236 (343)
++||..++=.+.+.-|||- ..=|.+.+-+-.....+..+ .||+ .||+|.+..-=. |.--.|..+-+.-|
T Consensus 587 ~~lmi~~~~~lF~ADT~Vn-----~~PtAEqLAeIAi~aA~~ar-~fGi-ePRVAmLSfSnF----GS~~~~~~~KVreA 655 (762)
T PRK12861 587 MNILLLDQRTVALVDTHVN-----DNPDAEQIAEFTIAAARQME-WLNL-TPKVALLSRSNF----GSGSAASGVKMRRA 655 (762)
T ss_pred EEEEECCCCCEEEEECCCC-----CCCCHHHHHHHHHHHHHHHH-HCCC-CCCEEEEECCCC----CCCCCCCHHHHHHH
T ss_conf 8899838962899726254-----58799999999999999999-8399-973899805789----99999715799999
Q ss_pred HHHHHHC--CCCCCCCCCCHHHEECCCCC-C---------CCEEEEEECCHHHHHHHHHC-C-CCEEE---EEEECCEE
Q ss_conf 8864215--87643455511210002236-6---------76899985120225555414-4-77279---99208764
Q gi|254780397|r 237 ITYLRND--NKNIIGPLPADSMFHHSARQ-C---------YDVAICMYHDQALIPIKTLD-F-NQTVN---ITLGLPFV 298 (343)
Q Consensus 237 I~~~~~~--g~~v~GP~paDt~F~~~~~~-~---------~D~vlamYHDQglip~K~l~-f-~~~Vn---~t~GLp~i 298 (343)
++.++++ .+.++|++-+|+++.+..++ . -.+.|.-==|-|-|..|++- + +.++. +-+||--+
T Consensus 656 veil~er~PdlevDGEMQ~DaAL~~~v~~~~~PfS~L~G~ANVLIfPnLdAANIaYKLlq~~~G~~vaIGPIL~Gl~KP 734 (762)
T PRK12861 656 LEIVREQAPDIEADGEMHGDCALDEGLRARLLPMSPLKGAANLLVCPNVDAGNIAYNLLKTEAGSNVAVGPFLLGVNAP 734 (762)
T ss_pred HHHHHHHCCCCEEECCCCCCHHCCHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCEECHHHHCCCCC
T ss_conf 9999974899688337871410589999855818967787848988996178999999999639985556175568986
No 23
>PRK07232 malic enzyme; Reviewed
Probab=98.74 E-value=2.4e-07 Score=64.54 Aligned_cols=251 Identities=15% Similarity=0.187 Sum_probs=157.5
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCC----EEECCCCHHCCCCCCCEEEEC
Q ss_conf 8838997189877478999998428523248989999399999999998189974----475386101112678537610
Q gi|254780397|r 4 FLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVP----LYETDCKNAVSIFKKALPIIS 79 (343)
Q Consensus 4 ~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~----i~~i~~~~~~~~~~~~i~i~~ 79 (343)
.|+|++.-||= |=+++|...-.-...+.||++|+++.++..++.+++++. +..+++.+.... ......+
T Consensus 440 pKRIVFpEGED-----eRVLrAA~~~~~EGIa~PILlGr~~~I~~~a~elGL~l~~~~~ieIIdP~~s~~~-~~Ya~~~- 512 (753)
T PRK07232 440 PKRVVFAEGEE-----ERVLRAAQEVVDEGLAKPILIGRPSVIEARIKKLGLRLKAGVDFEIVNPEDDPRY-EEYWQYY- 512 (753)
T ss_pred CCEEEECCCCC-----HHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHH-HHHHHHH-
T ss_conf 86698258877-----7899999999976986258856999999999976999766777167688761789-9999999-
Q ss_pred CCCCCCCCCCCCCCCCCHHHH--HHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCC-CCCC
Q ss_conf 333220013553100000246--7788776643012343044322344777641013256478999983423588-6652
Q gi|254780397|r 80 SPCGAKIVTGTPNPQTASSTI--ANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGI-TFKP 156 (343)
Q Consensus 80 ~~~~~~~~~G~~s~~~g~~~~--~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~-~~~~ 156 (343)
+...-.-|. +.+.++-.+ +..-.|.-++..|.+||||+|-.+. |..|-...-+.-+.+.+. ....
T Consensus 513 --~elrqRKGv-t~~~A~~lmr~d~nyFgAmMV~~GdADgmVsG~t~s---------ya~tLRpalqVIg~~pGv~~Vsg 580 (753)
T PRK07232 513 --YELLQRRGV-TPEDARRLVRRDRTVIGAMMVALGDADAMICGLTGR---------YHEHLRVVRQVIGLRPGVSRAAA 580 (753)
T ss_pred --HHHHHHCCC-CHHHHHHHHHHCCCHHHHHHHHCCCCCEEECCCCCC---------HHHHHHHHHHHHCCCCCCCEEEE
T ss_conf --999864599-999999998638434899999758988781388888---------79999999986366999853688
Q ss_pred CCCCCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHH
Q ss_conf 11233221126653045313334320102456788898999998531345670799963665445310000121024458
Q gi|254780397|r 157 VMMLSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPA 236 (343)
Q Consensus 157 ~Mll~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~Pa 236 (343)
++||..++=-+.+.-|||-. .=|.+.+-+-.....++.+ .||+ .||+|.+..-=. |.--+|..+.+.-|
T Consensus 581 ~~iMi~~~g~lF~ADt~Vn~-----~PtAEqLAdIAi~aA~~ar-~fGi-ePRVAmLSfSnf----GS~~~~~a~KVreA 649 (753)
T PRK07232 581 MNLLLLKGGTLFIADTYVNE-----DPTAEELAEIAIMAAEEVR-RFGI-EPRVALLSHSNF----GSSDSPSARKMREA 649 (753)
T ss_pred EEEEEECCCCEEEEECCCCC-----CCCHHHHHHHHHHHHHHHH-HCCC-CCEEEEEECCCC----CCCCCCHHHHHHHH
T ss_conf 89999279858997263678-----9599999999999999999-8499-970899804778----99999527899999
Q ss_pred HHHHHHC--CCCCCCCCCCHHHEECCCCC----------CCCEEEEEECCHHHHHHHHHC
Q ss_conf 8864215--87643455511210002236----------676899985120225555414
Q gi|254780397|r 237 ITYLRND--NKNIIGPLPADSMFHHSARQ----------CYDVAICMYHDQALIPIKTLD 284 (343)
Q Consensus 237 I~~~~~~--g~~v~GP~paDt~F~~~~~~----------~~D~vlamYHDQglip~K~l~ 284 (343)
++.++++ .+.++|++-+|+++.+..++ .-.+.|.-==|-|-|..|++-
T Consensus 650 v~il~er~PdlevDGEMQ~DaAL~~~v~~~k~PfS~L~G~ANVLIFPnLdAaNIaYKLlq 709 (753)
T PRK07232 650 VELLDERAPDLEVDGEMHGDAALNEEIRKRLYPFSRLKGSANVLVMPNLDAANISYNLLK 709 (753)
T ss_pred HHHHHHHCCCCEEECCCCHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHH
T ss_conf 999997689988813675604439999996584896788885898899756789999999
No 24
>PRK12862 malic enzyme; Reviewed
Probab=98.68 E-value=3.6e-07 Score=63.46 Aligned_cols=253 Identities=15% Similarity=0.196 Sum_probs=156.7
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCC----EEECCCCHHCCCCCCCEEEEC
Q ss_conf 8838997189877478999998428523248989999399999999998189974----475386101112678537610
Q gi|254780397|r 4 FLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVP----LYETDCKNAVSIFKKALPIIS 79 (343)
Q Consensus 4 ~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~----i~~i~~~~~~~~~~~~i~i~~ 79 (343)
.++|++.-||= |=++||...-.-...+.||++|+++.++..++.++++++ +..+++.+..... .....+
T Consensus 446 PKRIVFaEGED-----eRVLrAA~~~~~EGIa~PILlG~~~~I~~~a~~lGL~L~~~~~ieIIdP~~s~~~~-~Y~~~l- 518 (761)
T PRK12862 446 PKRVVFAEGED-----ERVLRAAQVVVDEGLAKPILIGRPAVIEARIERAGLRLRPGQDFEVVNPEDDPRYR-DYWDTY- 518 (761)
T ss_pred CCEEEECCCCC-----HHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHH-HHHHHH-
T ss_conf 86698358877-----78999999999759961699679999999999869997767784456877458999-999999-
Q ss_pred CCCCCCCCCCCCCCCCCHHHH-HHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCC-CCCC
Q ss_conf 333220013553100000246-77887766430123430443223447776410132564789999834235886-6521
Q gi|254780397|r 80 SPCGAKIVTGTPNPQTASSTI-ANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGIT-FKPV 157 (343)
Q Consensus 80 ~~~~~~~~~G~~s~~~g~~~~-~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~-~~~~ 157 (343)
+...-.-|....++-+... +..-.|.-++..|.+||||+|-.+.. ..|-...-+.-+.+.+.. ...+
T Consensus 519 --~elrqRKG~t~~~A~~~mr~d~nyFaAmMV~~GdADgmVsG~~~sy---------a~tLRpalqIIg~~pG~~~vSs~ 587 (761)
T PRK12862 519 --HALMGRKGVTPELARREVRRRTTLIGAMMVKRGEADAMICGTEGRY---------ERHLEFVLQVIGKRPGVRVYAAM 587 (761)
T ss_pred --HHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEECCCCCCH---------HHHHHHHHHHHCCCCCCEEEEEE
T ss_conf --9998645999999999985084048888987588887823888787---------99999999973679998158999
Q ss_pred CCCCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 12332211266530453133343201024567888989999985313456707999636654453100001210244588
Q gi|254780397|r 158 MMLSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAI 237 (343)
Q Consensus 158 Mll~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI 237 (343)
+||..++=.+.+.-|+|- ..=|.+.+-+-.....+..++ ||+ .||+|.+..-= .|.--.|..+.+.-|+
T Consensus 588 ~imi~~~g~lF~ADt~Vn-----~~PtAEqLAdIAi~aA~~ar~-fGi-ePRVAmLSfSn----fGS~~~~~~~KVreA~ 656 (761)
T PRK12862 588 SLLILPGRTLFLADTHVN-----EDPTAEELAEITILAAEEVRR-FGI-EPKVALLSHSN----FGSSDSPSARKMREAL 656 (761)
T ss_pred EEEEECCCEEEEEECCCC-----CCCCHHHHHHHHHHHHHHHHH-CCC-CCCEEEEECCC----CCCCCCCCHHHHHHHH
T ss_conf 999928960899626566-----797999999999999999998-399-85068881477----7899996379999999
Q ss_pred HHHHHC--CCCCCCCCCCHHHEECCCCC----------CCCEEEEEECCHHHHHHHHHCC
Q ss_conf 864215--87643455511210002236----------6768999851202255554144
Q gi|254780397|r 238 TYLRND--NKNIIGPLPADSMFHHSARQ----------CYDVAICMYHDQALIPIKTLDF 285 (343)
Q Consensus 238 ~~~~~~--g~~v~GP~paDt~F~~~~~~----------~~D~vlamYHDQglip~K~l~f 285 (343)
+.++++ .+.++|++-+|+++.+..++ .-++.+--==|-|-|..|++--
T Consensus 657 ~il~er~Pdl~vDGEMQ~DaAL~~~v~~~k~P~S~LaG~ANVLIFPnLdAaNIaYKLlqr 716 (761)
T PRK12862 657 EILRERAPDLEVDGEMHGDAALDEELRKRIFPDSRLEGEANLLVFPNLDAANIAYNLLKT 716 (761)
T ss_pred HHHHHHCCCCEEECCCCHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHH
T ss_conf 999976899888326747465499999954848967888938988996077899999999
No 25
>PRK05331 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=98.67 E-value=2.1e-06 Score=58.88 Aligned_cols=268 Identities=16% Similarity=0.215 Sum_probs=157.5
Q ss_pred CCCEEE-ECCCCCCCCHHHHHHHHCCC-CHHCCCCEEEECCHHHHHHHHHHCCCCC-CEEECCCCHHCCCCCCCEEEECC
Q ss_conf 883899-71898774789999984285-2324898999939999999999818997-44753861011126785376103
Q gi|254780397|r 4 FLPLIL-TQGDPAGIGPDISLKAWASR-QITAIPPFIYIGDVDVLNARAKQLNLSV-PLYETDCKNAVSIFKKALPIISS 80 (343)
Q Consensus 4 ~~pI~I-T~GDPaGIGpEIilKal~~~-~~~~~~~~viigd~~~l~~~~k~l~~~~-~i~~i~~~~~~~~~~~~i~i~~~ 80 (343)
|.+|+| .|| .-=||+.+++....- +-.....++++||.+.++...+..+... .+..+...+...-...-.
T Consensus 1 mi~IAvDaMG--GD~~P~~~v~Ga~~al~~~~d~~~~LvG~e~~i~~~l~~~~~~~~~i~iiha~~~V~m~d~p~----- 73 (317)
T PRK05331 1 MMKIAIDAMG--GDFGPEVVVPGALQALKEHPDLEILLVGDEEKIKPLLAKYPALRERIEIVHASEVIGMDDKPS----- 73 (317)
T ss_pred CCEEEEEECC--CCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHH-----
T ss_conf 9589999669--876728899999999987889769999589999999985777635758998996566788889-----
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 33220013553100000246778877664301234304432234477764101325647899998342358866521123
Q gi|254780397|r 81 PCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMML 160 (343)
Q Consensus 81 ~~~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Mll 160 (343)
..+. . ---.|+..|++++++|++||+|.+=-.-..+-.+-+ +|..+-+.+ .-.+|-.
T Consensus 74 ---~alR-------~--kk~SSm~~ai~lvk~g~ada~VSaGnTGAl~a~a~~-------~l~~i~gi~----RPaia~~ 130 (317)
T PRK05331 74 ---QALR-------R--KKDSSMRVALELVKEGEADACVSAGNTGALMAAALF-------VLGRLPGID----RPAIATI 130 (317)
T ss_pred ---HHHH-------C--CCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHH-------HHHCCCCCC----CCCCCEE
T ss_conf ---9986-------1--688719999999866887789954738999999999-------861205877----6410111
Q ss_pred C---CCCCEEEEECCCCCHHHHHHHC--CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHH
Q ss_conf 3---2211266530453133343201--0245678889899999853134567079996366544531000012102445
Q gi|254780397|r 161 S---GPQLRTVPVTIHIPIADICRIL--STKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIP 235 (343)
Q Consensus 161 ~---~~~L~V~l~TtHiPLk~V~~~i--t~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~P 235 (343)
+ .++. .=|-||=.++ +.+.+.+...+-....+..+|+++||++++ |= |+.-.-|+ +.+.-
T Consensus 131 ~Pt~~~~~--------~~llD~GAN~~~~~~~L~qfA~mGs~ya~~v~~i~~PrVgLL--Ni--G~E~~KG~---~~~k~ 195 (317)
T PRK05331 131 LPTLNGGG--------TVLLDLGANVDCKPEHLVQFAVMGSVYAEAVLGIENPRVGLL--NI--GEEEIKGN---ELVKE 195 (317)
T ss_pred CCCCCCCE--------EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEC--CC--CCCCCCCC---HHHHH
T ss_conf 43579973--------799967747877989999999999999998479999828761--58--76566767---99999
Q ss_pred HHHHHHHC-CCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCC-----------------------------
Q ss_conf 88864215-876434555112100022366768999851202255554144-----------------------------
Q gi|254780397|r 236 AITYLRND-NKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDF----------------------------- 285 (343)
Q Consensus 236 aI~~~~~~-g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f----------------------------- 285 (343)
|-+.+++. .++..|.+-++-+|. ++.|+|||== =-|-+.+|+..-
T Consensus 196 a~~lL~~~~~~nf~G~iEg~di~~----g~~DVvV~DG-FtGNv~LKt~EG~~~~~~~~lk~~~~~~~~~k~~~ll~~~~ 270 (317)
T PRK05331 196 AYELLKAAPSINFIGNVEGRDILK----GTADVVVCDG-FVGNVALKTSEGTAKMILSLLKEELKSSLLSKLGALLLKPA 270 (317)
T ss_pred HHHHHHCCCCCCEEEEECCCCCCC----CCCCEEEECC-CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 999996499980580104011468----9997899289-50189999987799999999999984088999999999999
Q ss_pred -----------CCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf -----------7727999208764755887552221336866838999999999999
Q gi|254780397|r 286 -----------NQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQL 331 (343)
Q Consensus 286 -----------~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~ 331 (343)
..|=-.-|||.=+. |.+-|.+|+..+.+||++|.++
T Consensus 271 l~~~~~~~d~~~~gGA~lLGl~g~v----------ik~HG~S~~~a~~~AI~~A~~~ 317 (317)
T PRK05331 271 LKRLKKKLDPREYGGAVLLGLNGIV----------IKSHGSSDAKAFKNAIRQAVEA 317 (317)
T ss_pred HHHHHHHCCHHHCCCEEEECCCCCE----------EECCCCCCHHHHHHHHHHHHHC
T ss_conf 9999986691022985797488228----------9817899989999999999749
No 26
>PRK13846 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=98.60 E-value=1.5e-05 Score=53.79 Aligned_cols=272 Identities=14% Similarity=0.118 Sum_probs=157.3
Q ss_pred CCEEE-EC-CCCCCCCHHHH----HHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCEEEE
Q ss_conf 83899-71-89877478999----99842852324898999939999999999818997447538610111267853761
Q gi|254780397|r 5 LPLIL-TQ-GDPAGIGPDIS----LKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALPII 78 (343)
Q Consensus 5 ~pI~I-T~-GDPaGIGpEIi----lKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~~~i~i~ 78 (343)
.+|+| .| || -||+.+ ..++..........++++|+.+.++...+....+-.+..+...+..
T Consensus 3 irIAvDaMGGD---~aP~~vve~~~~al~~~~~~~~~~~~l~g~~~~~~~~l~~~~~~~~~~iv~a~~vi---------- 69 (316)
T PRK13846 3 VQIGIDLMGGD---HSPLVVWEVLGDVLLSSSSEQPVEFTVFASSEVHHQILSNSPLSRSPKIIAAESFV---------- 69 (316)
T ss_pred EEEEEECCCCC---CCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCEEECCCCCC----------
T ss_conf 69999754888---87443899999999845017984999977899999987347534685798089720----------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 03332200135531000002467788776643012343044322344777641013256478999983423588665211
Q gi|254780397|r 79 SSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVM 158 (343)
Q Consensus 79 ~~~~~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~M 158 (343)
..+....... ..+ -.|+..|++++++|++||+|.+=-.-..+-.+-+ +|..+-+.+ .|..
T Consensus 70 ~m~e~p~~al---Rkk-----~sSm~~a~~lvk~g~ada~VSaGnTGA~ma~a~~-------~lg~i~gv~-----RPai 129 (316)
T PRK13846 70 SMEDSPLAAI---RKK-----SSSMALGLDYLQEDKLDAFISTGNTAALVTLARA-------KIPMFPAVP-----RPAL 129 (316)
T ss_pred CCCCCHHHHH---HCC-----CCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHH-------HHHCCCCCC-----CCEE
T ss_conf 8999889987---647-----6589999999976898889965737999999999-------870326987-----4545
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHC--CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHH
Q ss_conf 2332211266530453133343201--02456788898999998531345670799963665445310000121024458
Q gi|254780397|r 159 MLSGPQLRTVPVTIHIPIADICRIL--STKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPA 236 (343)
Q Consensus 159 ll~~~~L~V~l~TtHiPLk~V~~~i--t~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~Pa 236 (343)
+-.-...+ .+.=|-||=.++ +.+.+.+...+-.-..+..+++++||++++ | -||.-.-|+| .+.-|
T Consensus 130 a~~~Pt~~-----g~~~lLD~GANvd~~p~~L~qFA~MGs~ya~~~~~~~~PrVgLL--N--iG~E~~KG~~---~~kea 197 (316)
T PRK13846 130 LVSVPTMR-----GFAVILDVGANVSVNPEEMVGFARMGLAYRQCLGSNQPPTIGLL--N--IGSEERKGTE---AHRQT 197 (316)
T ss_pred EEECCCCC-----CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE--E--CCCCCCCCHH---HHHHH
T ss_conf 33230789-----97799978978766999999999999999998469999869986--2--5664546589---99999
Q ss_pred HHHHHHC-CCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCC------------------------CCEEEE
Q ss_conf 8864215-876434555112100022366768999851202255554144------------------------772799
Q gi|254780397|r 237 ITYLRND-NKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDF------------------------NQTVNI 291 (343)
Q Consensus 237 I~~~~~~-g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f------------------------~~~Vn~ 291 (343)
-+-|++. +++..|..-++-+|. ++.|+|||==. -|-+.+|+..- ..|=-.
T Consensus 198 ~~LL~~~~~~nF~GnvEg~di~~----g~~DVvV~DGF-tGNv~LKt~EG~~~~l~~~l~~~l~~~~k~~~d~~~ygGA~ 272 (316)
T PRK13846 198 FRMLRETFGSAFLGNIESGDVFS----GKVDIVVTDGF-TGNIFLKTAEGVFDFLRHILGDKLEKDIKRQLDYTIYPGSI 272 (316)
T ss_pred HHHHHCCCCCCEEEEECCCCCCC----CCCCEEEECCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEE
T ss_conf 99986086666366534132579----99848992884-31999998878999999999999999998755831269988
Q ss_pred EEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 920876475588755222133686683899999999999998520
Q gi|254780397|r 292 TLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQLGYQKN 336 (343)
Q Consensus 292 t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~~~~~~ 336 (343)
-|||.=+. |.+-|.+|+.++.+||++|.++++++-
T Consensus 273 LLGl~Giv----------vk~HGsS~~~a~~nAI~~a~~~~~~~v 307 (316)
T PRK13846 273 VCGLSKLV----------IKCHGKACGTSLFGGISGSIDLARARV 307 (316)
T ss_pred EEECCCCE----------EECCCCCCHHHHHHHHHHHHHHHHHCH
T ss_conf 87078438----------975899998999999999999999677
No 27
>pfam02504 FA_synthesis Fatty acid synthesis protein. The plsX gene is part of the bacterial fab gene cluster which encodes several key fatty acid biosynthetic enzymes. The exact function of the plsX protein in fatty acid synthesis is unknown.
Probab=98.58 E-value=7.5e-06 Score=55.55 Aligned_cols=273 Identities=16% Similarity=0.218 Sum_probs=161.8
Q ss_pred CEEE-ECCCCCCCCHHHHHHHHCCC-CHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCEEEECCCCC
Q ss_conf 3899-71898774789999984285-232489899993999999999981899744753861011126785376103332
Q gi|254780397|r 6 PLIL-TQGDPAGIGPDISLKAWASR-QITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALPIISSPCG 83 (343)
Q Consensus 6 pI~I-T~GDPaGIGpEIilKal~~~-~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~~~i~i~~~~~~ 83 (343)
+|+| .|| .--||+.+++..... +-.....++++||.+.++...+.....-.+..+...+...-..
T Consensus 2 kIAvDaMG--GD~~P~~vv~Ga~~al~~~~~~~i~LvG~e~~i~~~l~~~~~~~~i~iv~a~~~I~m~d----------- 68 (322)
T pfam02504 2 RIAIDAMG--GDHGPLEVVKGVLLAAKSAQDLDIVLVGDKDAIDPLVKEAELNSKLTIVHAEGVIEMED----------- 68 (322)
T ss_pred EEEEECCC--CCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHCCCCCCCEEEECCCCCCCCC-----------
T ss_conf 89998259--87584889999999998788976999929999999985167656818996888016898-----------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 20013553100000246778877664301234304432234477764101325647899998342358866521123322
Q gi|254780397|r 84 AKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGP 163 (343)
Q Consensus 84 ~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Mll~~~ 163 (343)
.|...- +. + -.|+..|++++++|++||+|++=-.-..+-.+-+ +|..+-+.. .|.++-.-.
T Consensus 69 ---~p~~a~-Rk-k--~SSm~~a~~lvk~g~ada~vSaGnTGA~~a~a~~-------~l~~i~gi~-----RPai~~~~P 129 (322)
T pfam02504 69 ---TPLAAI-RK-K--KSSMAVAIDLVKEGEADAAVSAGNTGALMALAML-------RLGRIKGIT-----RPALGTELP 129 (322)
T ss_pred ---CHHHHH-HC-C--CCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHH-------HHHHHCCCC-----CCEEEEECC
T ss_conf ---889998-63-6--8819999999732037889953737999999999-------885005888-----644644045
Q ss_pred CCEEEEECCCCCHHHHHHHC--CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 11266530453133343201--0245678889899999853134567079996366544531000012102445888642
Q gi|254780397|r 164 QLRTVPVTIHIPIADICRIL--STKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLR 241 (343)
Q Consensus 164 ~L~V~l~TtHiPLk~V~~~i--t~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~ 241 (343)
..+ -.+.=|-|+=.++ +.+.+.+...+-....+..+++++||++++-. |+.-.-|+| .+.-|-+-++
T Consensus 130 t~~----g~~~~lLD~GANv~~~~~~L~qFA~mG~~ya~~~~~~~~PrVgLLNi----G~E~~KG~~---~~kea~~lL~ 198 (322)
T pfam02504 130 TVN----GKFTVLLDVGANVDCKPKELVQFALMGSVYAQSLLGIDSPRVGLLNI----GEEEVKGND---LHKQTFKLLK 198 (322)
T ss_pred CCC----CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC----CCCCCCCHH---HHHHHHHHHH
T ss_conf 579----97589984787877798999999999999999972999980878755----654546539---9999999998
Q ss_pred HC-CCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCC-----------------------------------
Q ss_conf 15-876434555112100022366768999851202255554144-----------------------------------
Q gi|254780397|r 242 ND-NKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDF----------------------------------- 285 (343)
Q Consensus 242 ~~-g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f----------------------------------- 285 (343)
+. +++..|-.-++-+|. +..|+|||== =-|-+.+|+..-
T Consensus 199 ~~~~~nf~GnvEg~~i~~----g~~DVvV~DG-F~GNi~LKt~EG~~~~i~~~lk~~~~~~~~~k~~~ll~~~~l~~~~~ 273 (322)
T pfam02504 199 ATPGYNFLGNVEGRDILD----GVVDVIVCDG-FTGNVILKTAEGVAKFIGSILKDELKRSKLSKLGALLLSKALKRLKK 273 (322)
T ss_pred HCCCCCEEEEECCCCCCC----CCCCEEEECC-CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 289984450013010578----9984899488-40099999987899999999898852077889999999999999986
Q ss_pred -----CCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf -----772799920876475588755222133686683899999999999998520
Q gi|254780397|r 286 -----NQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQLGYQKN 336 (343)
Q Consensus 286 -----~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~~~~~~ 336 (343)
..+=-+-+||.=+ .+.+-|.+|...+.+||+.|.++++++-
T Consensus 274 ~~d~~~~gGa~llGl~g~----------vvk~HG~S~~~a~~naI~~a~~~~~~~~ 319 (322)
T pfam02504 274 KFDYKEYGGAVLLGLSGL----------VIKSHGSADKTAIFAAIRQAIELVQTGV 319 (322)
T ss_pred HCCCCCCCCEEEECCCCC----------EEECCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 389531198789758843----------8975799998999999999999998386
No 28
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=98.47 E-value=6.1e-05 Score=50.07 Aligned_cols=228 Identities=18% Similarity=0.255 Sum_probs=149.5
Q ss_pred HCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 24898999939999999999818997447538610111267853761033322001355310000024677887766430
Q gi|254780397|r 32 TAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTL 111 (343)
Q Consensus 32 ~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~~~i~i~~~~~~~~~~~G~~s~~~g~~~~~sl~~A~~l~~ 111 (343)
.....||++|+..-++..++.+++++.-. .+++.+. .-++-.+|++++.
T Consensus 199 ~gli~PiLVG~~~kI~~~A~~~~~dl~~~---------------~ivd~~~----------------~~~AA~~Av~lv~ 247 (465)
T PRK08190 199 AGLIVPVLVGPEAKIRAAAEEAGVDLSGV---------------RIVAVEH----------------SHAAAARAVALAR 247 (465)
T ss_pred CCCCEEEEECCHHHHHHHHHHCCCCCCCC---------------EEECCCC----------------CHHHHHHHHHHHH
T ss_conf 79915899799999999999859982268---------------8870799----------------4899999999986
Q ss_pred CCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHH---------
Q ss_conf 12343044322344777641013256478999983423588665211233221126653045313334320---------
Q gi|254780397|r 112 SGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRI--------- 182 (343)
Q Consensus 112 ~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Mll~~~~L~V~l~TtHiPLk~V~~~--------- 182 (343)
+|++++|.-|-++...+..+ ..++. ..||+...-+|+-+-+||.+
T Consensus 248 ~G~a~~lMKG~l~T~~ll~a-------------vl~ke-------------~GLrt~r~lSHv~~~~vP~y~k~l~iTDa 301 (465)
T PRK08190 248 AGEVEALMKGSLHTDELLSA-------------VVARD-------------SGLRTERRISHVYAMDVPTYPRPLLITDA 301 (465)
T ss_pred CCCCCEEECCCCCHHHHHHH-------------HHCCC-------------CCCCCCCEEEEEEEEECCCCCCEEEECCC
T ss_conf 79665896288666888898-------------74243-------------69878986899999944899834997254
Q ss_pred ---CCHHHHHHHHHHHHHH--HHHHCCCCCCEEEEEE----ECCCCCCCCCCCCCCCHHHHHHHHHHHHC----CCCCCC
Q ss_conf ---1024567888989999--9853134567079996----36654453100001210244588864215----876434
Q gi|254780397|r 183 ---LSTKRIIETSDTVYNA--MKKYFGINNPRIAISG----LNPHAGENATIGIEEKNIIIPAITYLRND----NKNIIG 249 (343)
Q Consensus 183 ---it~~~I~~ki~~~~~~--l~~~~gi~~PkIaV~g----LNPHAGE~G~~G~EE~~iI~PaI~~~~~~----g~~v~G 249 (343)
|.+ .+.+|..++.+. +-+.+|+..||+|+++ .||.= ...+=.-++.++.++ |--|+|
T Consensus 302 aini~P-~l~~K~~Ii~Nai~~a~~lG~~~PKVAiLsAvE~vnp~m---------psTlDAa~L~kma~rGqi~g~ivdG 371 (465)
T PRK08190 302 AINIAP-TLEQKRDIVQNAIDLAHALGVEEPKVAILSAVETVNPKI---------PSTLDAAALCKMADRGQITGGIVDG 371 (465)
T ss_pred EEEECC-CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCC---------CCHHHHHHHHHHHHCCCCCCCEEEC
T ss_conf 033488-989999999999999998199998299996001448889---------6458899999999748968848877
Q ss_pred CCCCHHHEECC----------CCCCCCEEEEEECCHHHHHHHHHCCCCEE---EEEE--ECCEEEECCCCCCCHHHCCCC
Q ss_conf 55511210002----------23667689998512022555541447727---9992--087647558875522213368
Q gi|254780397|r 250 PLPADSMFHHS----------ARQCYDVAICMYHDQALIPIKTLDFNQTV---NITL--GLPFVRTSPDHGTAFDIAGSS 314 (343)
Q Consensus 250 P~paDt~F~~~----------~~~~~D~vlamYHDQglip~K~l~f~~~V---n~t~--GLp~irtSpdHGTafdiagk~ 314 (343)
|+.=|.++... .-++-|..+.-.=+-|-+-.|.|.|.-+- .+-+ --|++-||-.
T Consensus 372 PLa~DnAis~eAA~~Kgi~s~VAG~ADiLlvPdieaGN~l~K~l~~~a~a~~AGiv~GakvPIvLtSRa----------- 440 (465)
T PRK08190 372 PLAFDNAISAEAAKTKGIVSPVAGQADILVVPDLEAGNMLAKQLTYLAGADAAGIVLGARVPIILTSRA----------- 440 (465)
T ss_pred CCHHHHHCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCC-----------
T ss_conf 842775379989964699998788788898087477639999999857987788898367878972789-----------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 668389999999999999852001
Q gi|254780397|r 315 LTQEESLVSALKIAAQLGYQKNLC 338 (343)
Q Consensus 315 ~a~~~s~~~ai~~a~~~~~~~~~~ 338 (343)
-+..|-+.++-+|.-++++++..
T Consensus 441 -Ds~~~kl~S~AlA~l~a~~~~~~ 463 (465)
T PRK08190 441 -DSLRARLASCALALLVAHARRAG 463 (465)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHC
T ss_conf -97888999999999999987408
No 29
>COG0416 PlsX Fatty acid/phospholipid biosynthesis enzyme [Lipid metabolism]
Probab=98.29 E-value=5.2e-05 Score=50.48 Aligned_cols=272 Identities=17% Similarity=0.227 Sum_probs=152.8
Q ss_pred CCCEEE-ECCCCCCCCHHHHHHHHCCC-CHHCCCCEEEECCHHHHHHHHHHCCCC--CCEEECCCCHHCCCCCCCEEEEC
Q ss_conf 883899-71898774789999984285-232489899993999999999981899--74475386101112678537610
Q gi|254780397|r 4 FLPLIL-TQGDPAGIGPDISLKAWASR-QITAIPPFIYIGDVDVLNARAKQLNLS--VPLYETDCKNAVSIFKKALPIIS 79 (343)
Q Consensus 4 ~~pI~I-T~GDPaGIGpEIilKal~~~-~~~~~~~~viigd~~~l~~~~k~l~~~--~~i~~i~~~~~~~~~~~~i~i~~ 79 (343)
|++|+| .|| .--||+.++++...- +-.....++++||++.++.....+... -.+..+...+.. .
T Consensus 1 ~~~IAiDaMG--GD~~P~~vv~g~~~al~~~~~~~~iLvGd~~~i~~~L~~~~~~~~~~i~i~~a~~~I----------~ 68 (338)
T COG0416 1 MIKIAIDAMG--GDHGPEVVVPGALQALEEHPDLEIILVGDEDKIEPLLAKAPKLLRERIEIVHAEEVI----------E 68 (338)
T ss_pred CCEEEEECCC--CCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCCCEEEECCCCC----------C
T ss_conf 9449986257--776837889999999986899379997789998998841642210054378645301----------5
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 33322001355310000024677887766430123430443223447776410132564789999834235886652112
Q gi|254780397|r 80 SPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMM 159 (343)
Q Consensus 80 ~~~~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Ml 159 (343)
.+. .|+..=-+---.|+..|+++.++|++||+|.+=-+=..|..+-+. | +.-.+...-.+|-
T Consensus 69 m~d-------~p~~AvR~k~~sSM~~A~~lVkeg~ADa~VSAGnTGAlma~a~~~-------l----g~i~gI~RPAi~~ 130 (338)
T COG0416 69 MDD-------KPSQALRKKKGSSMRVALDLVKEGKADACVSAGNTGALMALALLK-------L----GRIKGIDRPALAT 130 (338)
T ss_pred CCC-------CHHHHHHCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHH-------H----CCCCCCCCCCEEE
T ss_conf 787-------889998727885799999998567677798468469999999987-------4----5477888551125
Q ss_pred CC---CCCCEEEEECCCCCHHHHHHHC--CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHH
Q ss_conf 33---2211266530453133343201--024567888989999985313456707999636654453100001210244
Q gi|254780397|r 160 LS---GPQLRTVPVTIHIPIADICRIL--STKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIII 234 (343)
Q Consensus 160 l~---~~~L~V~l~TtHiPLk~V~~~i--t~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~ 234 (343)
.+ .++- + =+=||=.++ +.+.+.+...+-.-..+..+|+++||++++-. ||.-.-|+| .+.
T Consensus 131 ~~Pt~~~~~-~-------~~LDvGANvd~~~~~L~qfA~MG~~ya~~v~~~~~PrVgLLNI----G~Ee~KG~e---~~k 195 (338)
T COG0416 131 LLPTIDGGK-T-------VVLDVGANVDCKPEHLVQFALMGSAYAEKVLGIKNPRVGLLNI----GTEEIKGNE---LVK 195 (338)
T ss_pred ECCCCCCCC-E-------EEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC----CCCCCCCCH---HHH
T ss_conf 443557981-4-------9996788788899999999999999999962889996788756----553545878---999
Q ss_pred HHHHHHHHC-CCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCC----------------------------
Q ss_conf 588864215-876434555112100022366768999851202255554144----------------------------
Q gi|254780397|r 235 PAITYLRND-NKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDF---------------------------- 285 (343)
Q Consensus 235 PaI~~~~~~-g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f---------------------------- 285 (343)
-|-+-||+. +++..|=.-++.+|. +..|+|||==- -|-+.+|+..-
T Consensus 196 ea~~lLk~~~~~nF~GnvEg~di~~----G~~DVvV~DGF-tGNv~LKt~EG~a~~i~~~lK~~~~~s~~~klgall~k~ 270 (338)
T COG0416 196 EAYELLKETPLINFIGNVEGRDILD----GTVDVVVTDGF-TGNVVLKTAEGTAKFILSLLKEEIKSSLKSKLGALLLKP 270 (338)
T ss_pred HHHHHHHHCCCCCEEEECCCCCCCC----CCCCEEEECCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999997487775365225421236----87778995796-018999987789999999999998876899999998756
Q ss_pred ------------CCEEEEEEECC--EEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf ------------77279992087--64755887552221336866838999999999999985200
Q gi|254780397|r 286 ------------NQTVNITLGLP--FVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQLGYQKNL 337 (343)
Q Consensus 286 ------------~~~Vn~t~GLp--~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~~~~~~~ 337 (343)
..+=-+-+||- .|.+ | |.||.+++.+||+.|.++.+++-.
T Consensus 271 ~~k~lk~k~d~~~~~Ga~llGl~giViKs---H---------Gsad~~a~~~AI~~a~~~~~~~v~ 324 (338)
T COG0416 271 ALKRLKKKLDPSEYGGAVLLGLNGIVIKS---H---------GSADARAFASAIRQAYEMVKSQVP 324 (338)
T ss_pred HHHHHHHHCCHHHCCCEEEECCCCEEEEE---C---------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999874886640982783167248971---6---------875789999999999999998789
No 30
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=98.17 E-value=4.6e-05 Score=50.79 Aligned_cols=251 Identities=16% Similarity=0.168 Sum_probs=147.3
Q ss_pred CCCCEEEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCC--EEECCCCHHCCCCCCCEEEECC
Q ss_conf 88838997189877478999998428523248989999399999999998189974--4753861011126785376103
Q gi|254780397|r 3 EFLPLILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVP--LYETDCKNAVSIFKKALPIISS 80 (343)
Q Consensus 3 k~~pI~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~--i~~i~~~~~~~~~~~~i~i~~~ 80 (343)
..|+|++.-||- |=+++|...-.-...+.++++|+++.++..++.++++++ +..+++.+. ...+..-+
T Consensus 390 ~~krIVlpEg~d-----~rvl~Aa~~~~~~gia~~iLlG~~~~i~~~~~~~gl~l~~~~~iidp~~~---~~~y~~~~-- 459 (702)
T PRK05632 390 AKKRIVLPEGDE-----PRTLKAAAICAERGIADCVLLGNPEEIRRVAAAQGVDLPDGLEIIDPEEV---RERYVAPL-- 459 (702)
T ss_pred CCCEEEECCCCC-----HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCEEECCHHH---HHHHHHHH--
T ss_conf 798799679898-----69999999999869805999789999999999759997579889897157---99999999--
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHH-HHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 33220013553100000246778877664301234304432234477-76410132564789999834235886652112
Q gi|254780397|r 81 PCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFL-LYQEKFKFPGHTEFLAELAKKNTGITFKPVMM 159 (343)
Q Consensus 81 ~~~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~-l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Ml 159 (343)
....-.-|---..+-....+....|.-+...|.+||||+|-.+..+ .....+ +.+...-+.+.. +.-..|+
T Consensus 460 -~~lr~~kG~t~~~A~~~~~~~~~fg~mmv~~g~aDg~vsG~~~tt~~~irpal------qii~~~pg~~~v-ss~f~m~ 531 (702)
T PRK05632 460 -VELRKHKGLTEEVAREQLEDNVVLGTMMLALGEVDGLVSGAVHTTANTIRPAL------QLIKTAPGSSLV-SSVFFML 531 (702)
T ss_pred -HHHHHHCCCCHHHHHHHHHCCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHH------HHCCCCCCCCEE-EEEEEEE
T ss_conf -99973089899999998607403899998648988794066768077775688------764778998436-8899999
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 33221126653045313334320102456788898999998531345670799963665445310000121024458886
Q gi|254780397|r 160 LSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITY 239 (343)
Q Consensus 160 l~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~ 239 (343)
+- ++. .+..-++|- -.=|.+.+-+-.....++.+ .||+ .||+|.+..-- |.+| ..|+.+-..-|.+.
T Consensus 532 ~~-~~~-l~~~Dc~vn-----~~P~aeqLa~IA~~sa~~a~-~fgi-~PrvAmLS~St--~~s~--~~~~~~kv~~A~~~ 598 (702)
T PRK05632 532 LP-DQV-LVYGDCAIN-----PDPTAEQLAEIAIQSADSAA-AFGI-EPRVAMLSYST--GTSG--SGADVEKVREATRL 598 (702)
T ss_pred EC-CCE-EEEEECCCC-----CCCCHHHHHHHHHHHHHHHH-HCCC-CCEEEEECCCC--CCCC--CCCHHHHHHHHHHH
T ss_conf 57-943-899603025-----89799999999999999999-8199-96099973568--9999--99425899999999
Q ss_pred HHHC--CCCCCCCCCCHHHEECCCC----------CCCCEEEEEECCHHHHHHHHHC
Q ss_conf 4215--8764345551121000223----------6676899985120225555414
Q gi|254780397|r 240 LRND--NKNIIGPLPADSMFHHSAR----------QCYDVAICMYHDQALIPIKTLD 284 (343)
Q Consensus 240 ~~~~--g~~v~GP~paDt~F~~~~~----------~~~D~vlamYHDQglip~K~l~ 284 (343)
++++ .+.++||+-+|+++.+... ++-.+++.-==|-|-|..|++-
T Consensus 599 ~~~~~pdl~idGe~q~DaA~~~~v~~~k~p~s~v~g~AnvlifP~L~~gNi~yk~~q 655 (702)
T PRK05632 599 ARERRPDLLIDGPLQYDAAVDPSVARSKAPNSPVAGRATVFIFPDLNTGNTTYKAVQ 655 (702)
T ss_pred HHHHCCCCEECCCCCCCEECCHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHH
T ss_conf 998689987614652310058999996686897789883898999754669999999
No 31
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases; InterPro: IPR011828 This entry represents a group of archaeal decarboxylating dehydrogenases which include the leucine biosynthesis enzyme 3-isopropylmalate dehydrogenase (LeuB, LEU3) and the methanogenic cofactor CoB biosynthesis enzyme isohomocitrate dehydrogenase (AksF). Both of these have been characterised in Methanococcus janaschii . Sequences from the non-methanogenic archaea are also represented in this entry, presumably LeuB, although phylogenetic trees cannot establish which gene is which in the methanogens.; GO: 0003862 3-isopropylmalate dehydrogenase activity, 0051287 NAD binding, 0009098 leucine biosynthetic process.
Probab=98.13 E-value=1.5e-06 Score=59.81 Aligned_cols=135 Identities=19% Similarity=0.225 Sum_probs=78.6
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-EECCCCCCCCCCCCCCCHHHHHHHHHH-HHCC-CCCCCCCCCHH
Q ss_conf 43201024567888989999985313456707999-636654453100001210244588864-2158-76434555112
Q gi|254780397|r 179 ICRILSTKRIIETSDTVYNAMKKYFGINNPRIAIS-GLNPHAGENATIGIEEKNIIIPAITYL-RNDN-KNIIGPLPADS 255 (343)
Q Consensus 179 V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~-gLNPHAGE~G~~G~EE~~iI~PaI~~~-~~~g-~~v~GP~paDt 255 (343)
..+-||.+.=.+-++-..+--++. .+-|+-.. ==|===+..|+| .-.+.+- +..| +++. =+=-|+
T Consensus 152 a~RViTr~gSeRIa~~A~~lAk~r---~rKKvT~vHKANVlk~tdgLF--------~~V~rEi~~~~g~ve~~-d~~vDs 219 (350)
T TIGR02088 152 AIRVITRKGSERIARFAFELAKKR---NRKKVTCVHKANVLKVTDGLF--------LEVCREIAKSYGEVEYE-DYLVDS 219 (350)
T ss_pred EEEEECHHHHHHHHHHHHHHHHHH---CCCEEEEEECCCCCCCCCCHH--------HHHHHHHHCCCCCEEHH-HHHHHH
T ss_conf 645102464399999999999860---794078997233423356315--------99999985179964132-288999
Q ss_pred HEECCCC--CCCCEEEE--EECCH------------HHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHH
Q ss_conf 1000223--66768999--85120------------22555541447727999208764755887552221336866838
Q gi|254780397|r 256 MFHHSAR--QCYDVAIC--MYHDQ------------ALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEE 319 (343)
Q Consensus 256 ~F~~~~~--~~~D~vla--mYHDQ------------glip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~ 319 (343)
+-.+-.+ .+||+||. ||=|= ||.|= -|+ |=-.=---|=||.||||||||+|||.
T Consensus 220 ~a~~Lv~~P~~fDVIVTtNmFGDIlSD~A~~l~GsLGLaPS--------ANi--Gd~~AlFEPVHGsApDIAGKGIANP~ 289 (350)
T TIGR02088 220 AAMNLVKDPEKFDVIVTTNMFGDILSDLAAALVGSLGLAPS--------ANI--GDRKALFEPVHGSAPDIAGKGIANPT 289 (350)
T ss_pred HHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCC--------CCC--CCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 99985238630676786234524188999998502213676--------521--04523357767776563664102378
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999852
Q gi|254780397|r 320 SLVSALKIAAQLGYQK 335 (343)
Q Consensus 320 s~~~ai~~a~~~~~~~ 335 (343)
.++-++.|-++.....
T Consensus 290 A~ILs~~MmL~~~G~~ 305 (350)
T TIGR02088 290 AAILSVAMMLDYLGEL 305 (350)
T ss_pred HHHHHHHHHHHHHCCC
T ss_conf 9999999999861110
No 32
>PRK13845 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=97.73 E-value=0.001 Score=42.68 Aligned_cols=253 Identities=19% Similarity=0.261 Sum_probs=148.0
Q ss_pred CCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHH----HHHHHHHHHH
Q ss_conf 989999399999999998189974475386101112678537610333220013553100000246----7788776643
Q gi|254780397|r 35 PPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALPIISSPCGAKIVTGTPNPQTASSTI----ANIEKAVSLT 110 (343)
Q Consensus 35 ~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~~~i~i~~~~~~~~~~~G~~s~~~g~~~~----~sl~~A~~l~ 110 (343)
..+.++|+.+.++...+.+++.-.+. ..+....+.+++.... .|- +.+ +.++- .|+..|+++.
T Consensus 124 ~~i~~vg~~~~i~~~~~~~~~~e~~~-------~~~~~~~~~~v~s~~~----i~m-~e~-a~AVRrKKdSSi~vA~~LV 190 (437)
T PRK13845 124 LNIKFVGEIEKVKEAAEALGLEELLE-------KAIDAGHLELIASGPS----IGM-DEE-ATAVRKKKDASINVAMDLV 190 (437)
T ss_pred CEEEEECCHHHHHHHHHHCCCHHHHH-------HHHHCCCEEEEECCCC----CCC-CCH-HHHHHHCCCCHHHHHHHHH
T ss_conf 35999667799999999716065677-------6530375799717998----787-733-7777604624899999998
Q ss_pred HCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHC--CHHHH
Q ss_conf 0123430443223447776410132564789999834235886652112332211266530453133343201--02456
Q gi|254780397|r 111 LSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRIL--STKRI 188 (343)
Q Consensus 111 ~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Mll~~~~L~V~l~TtHiPLk~V~~~i--t~~~I 188 (343)
++|++||+|.+=-.=..|-.+-| .|..+-+.+ .|.+.-.-..+.- ...+=|-|+=.++ +++.+
T Consensus 191 K~G~AdA~vSAGNTGAlmA~a~~-------~Lgri~GI~-----RPAIa~~~Pt~~~---g~~~llLD~GANvdckpe~L 255 (437)
T PRK13845 191 KKGKALAVYSAGNSGAMMASAIF-------RLGRLKGID-----RPAIGALFPTKDP---GQPVLVLDVGANMDCKPSYL 255 (437)
T ss_pred HCCCCCEEEECCCHHHHHHHHHH-------EECCCCCCC-----CCCCCEECCCCCC---CCEEEEEECCCCCCCCHHHH
T ss_conf 65877689836863899987761-------136579987-----1410622676689---97379997885899898999
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCCCCCCHHHEECCCCCCCCE
Q ss_conf 788898999998531345670799963665445310000121024458886421-5876434555112100022366768
Q gi|254780397|r 189 IETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRN-DNKNIIGPLPADSMFHHSARQCYDV 267 (343)
Q Consensus 189 ~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~-~g~~v~GP~paDt~F~~~~~~~~D~ 267 (343)
.+...+-.-..+..+|+++|||+++-. ||.-.-|+| .+.-|-+-+++ ..++..|-.-+.-+|. ++.|+
T Consensus 256 ~QFAiMGsiYAk~Vlgi~~PrVGLLNI----GeEe~KGne---l~keA~~LLk~~~~iNFiGNVEGrDI~~----G~~DV 324 (437)
T PRK13845 256 HQFALLGNIYSRDVLQVKKPRIGLLNI----GEEECKGND---LSLKTFELLSEEKRFHFAGNCEGRDVLS----GDFDV 324 (437)
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEC----CCCCCCCCH---HHHHHHHHHHCCCCCCEECCCCCCCCCC----CCCCE
T ss_conf 999999999999960999985787645----664555639---9999999986088973315544010357----87878
Q ss_pred EEEEECCHHHHHHHHHC---------------------------------------C-CCEEEEEEECCEEEECCCCCCC
Q ss_conf 99985120225555414---------------------------------------4-7727999208764755887552
Q gi|254780397|r 268 AICMYHDQALIPIKTLD---------------------------------------F-NQTVNITLGLPFVRTSPDHGTA 307 (343)
Q Consensus 268 vlamYHDQglip~K~l~---------------------------------------f-~~~Vn~t~GLp~irtSpdHGTa 307 (343)
|||==. -|-+.+|+.. . ..|=-.-|||-=+
T Consensus 325 VVcDGF-tGNV~LKt~EG~a~~i~~~LK~~~~~s~~~Kigalllk~~Lk~lkkrlD~~eyGGApLLGlnGi--------- 394 (437)
T PRK13845 325 VVCDGF-TGNVLLKFLESVGSVLLDVLRAELPRGRRGKVGSAFLRSNLKRIKKRLDHAEHGGALLLGVNGI--------- 394 (437)
T ss_pred EEECCC-CCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCC---------
T ss_conf 995784-0189999877799999999999987477999999999999999987679001599668647852---------
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 221336866838999999999999985200
Q gi|254780397|r 308 FDIAGSSLTQEESLVSALKIAAQLGYQKNL 337 (343)
Q Consensus 308 fdiagk~~a~~~s~~~ai~~a~~~~~~~~~ 337 (343)
-|.+-|.+|..++.+||++|.+++.+.-+
T Consensus 395 -vIksHGsS~A~Ai~nAIrvA~~~a~hgv~ 423 (437)
T PRK13845 395 -CVIGHGSSKALSVVSALRLAHSAASHGVM 423 (437)
T ss_pred -EEEECCCCCHHHHHHHHHHHHHHHHCCHH
T ss_conf -89807888889999999999999975808
No 33
>TIGR00182 plsX fatty acid/phospholipid synthesis protein PlsX; InterPro: IPR003664 The plsX gene is part of the bacterial fab gene cluster which encodes several key fatty acid biosynthetic enzymes . The plsX gene encodes a poorly understood enzyme of phospholipid metabolism .; GO: 0003824 catalytic activity, 0006633 fatty acid biosynthetic process.
Probab=97.48 E-value=0.0033 Score=39.70 Aligned_cols=271 Identities=17% Similarity=0.280 Sum_probs=156.0
Q ss_pred CEEE-ECCCCCCCCHHHHHHHHCC-CCHHCCCCEEEECCHHHHHHHHHHCCCC-CCEEECCCCHHCCCCCCCEEEECCCC
Q ss_conf 3899-7189877478999998428-5232489899993999999999981899-74475386101112678537610333
Q gi|254780397|r 6 PLIL-TQGDPAGIGPDISLKAWAS-RQITAIPPFIYIGDVDVLNARAKQLNLS-VPLYETDCKNAVSIFKKALPIISSPC 82 (343)
Q Consensus 6 pI~I-T~GDPaGIGpEIilKal~~-~~~~~~~~~viigd~~~l~~~~k~l~~~-~~i~~i~~~~~~~~~~~~i~i~~~~~ 82 (343)
||+| .||= ==+|+-++.+... -...+.-.++++||.+.++........+ +++..+...+-.+-.. .+.
T Consensus 2 riavD~mGg--D~~P~~~i~gv~~~~~~~~~l~~~LVGD~~~i~~~L~~~~~~~~~~~~~~A~~~I~m~~-------~p~ 72 (344)
T TIGR00182 2 RIAVDAMGG--DHAPSEVIEGVLRYASENQDLSIILVGDKDAIEPLLDKLPKNQIKITIIHAQSVIEMTD-------TPV 72 (344)
T ss_pred EEEEEECCC--CCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC-------HHH
T ss_conf 278870688--88844678899998751087238983372555367530321366178871466526661-------154
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 22001355310000024677887766430123430443223447776410132564789999834235886652112332
Q gi|254780397|r 83 GAKIVTGTPNPQTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSG 162 (343)
Q Consensus 83 ~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Mll~~ 162 (343)
..==+-.-.|+..|+++.++|.+||+|-|=-+=..|-.+-+- |.++-+..-. ..-++|.-.+
T Consensus 73 ----------~AiRRK~~sSm~~a~~lVkeg~ADa~iSAG~sGa~m~la~l~-------lGri~G~~rP-A~~t~~Pt~~ 134 (344)
T TIGR00182 73 ----------EAIRRKKNSSMQVAMNLVKEGRADAVISAGNSGALMGLALLR-------LGRIKGIERP-ALVTLLPTVN 134 (344)
T ss_pred ----------HHHHHCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHC-------CCCCCCCCCC-EECCCCCCCC
T ss_conf ----------775414102799999996269974899865389999998640-------4541567665-1014277011
Q ss_pred CCCEEEEECCCCCHHHHHHHC--CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCC---HHHHHHH
Q ss_conf 211266530453133343201--02456788898999998531345670799963665445310000121---0244588
Q gi|254780397|r 163 PQLRTVPVTIHIPIADICRIL--STKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEK---NIIIPAI 237 (343)
Q Consensus 163 ~~L~V~l~TtHiPLk~V~~~i--t~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~---~iI~PaI 237 (343)
.+=++.++ ||=.+. +.+.+.+-.-.-.-.-++-.++.+||||.+- +|.||. +.+.-+-
T Consensus 135 P~~~~~~L-------DvGAN~dc~p~~L~~fAlMG~vy~~~v~~~~sPkVgLLN----------iGeE~~KG~~l~~~t~ 197 (344)
T TIGR00182 135 PKDKFVLL-------DVGANVDCKPKYLVQFALMGSVYAKKVLGVDSPKVGLLN----------IGEEDNKGNDLVKETF 197 (344)
T ss_pred CCCEEEEE-------ECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECC----------CCCCCHHHHHHHHHHH
T ss_conf 89626998-------555675788432334410133211110005898056235----------7650021356689999
Q ss_pred HHHHHC-CCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCC-------------------------------
Q ss_conf 864215-876434555112100022366768999851202255554144-------------------------------
Q gi|254780397|r 238 TYLRND-NKNIIGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDF------------------------------- 285 (343)
Q Consensus 238 ~~~~~~-g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f------------------------------- 285 (343)
+-||.. .|+..|=.=|--+|. +.+|++||==. -|-+.+|++.-
T Consensus 198 ~~Lk~~~~inF~GnvE~rdlL~----G~~DV~VcDGF-~GNvvLKt~EGv~~~i~~~lK~~~~~~~rskl~al~~~~~lK 272 (344)
T TIGR00182 198 KLLKEDPNINFIGNVEARDLLD----GVVDVLVCDGF-TGNVVLKTMEGVAKTILSILKDELKSKLRSKLAALLLKPILK 272 (344)
T ss_pred HHHHCCCCCCEEEEECHHHHHC----CCEEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 9962288776065200054306----86469984384-131577766899999999987524876543789987212456
Q ss_pred ---------C---CEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf ---------7---7279992087647558875522213368668389999999999999852
Q gi|254780397|r 286 ---------N---QTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQLGYQK 335 (343)
Q Consensus 286 ---------~---~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~~~~~ 335 (343)
+ .|=-+=+||-=+.. =.|| .||.+++..||++|.++..+.
T Consensus 273 ~~~~k~dy~nPdqygGA~L~Gl~~~vi-ksHG---------ss~~~a~~~AIrqA~~av~~q 324 (344)
T TIGR00182 273 SLKQKFDYANPDQYGGAVLLGLNKLVI-KSHG---------SSDSRAIFSAIRQAKEAVKSQ 324 (344)
T ss_pred HHHHCCCCCCCCCCCCEEEECCCCEEE-EECC---------CCCHHHHHHHHHHHHHHHHHH
T ss_conf 786314636754348837761473178-7237---------410357999999999999877
No 34
>TIGR02706 P_butyryltrans phosphate butyryltransferase; InterPro: IPR014079 Members of this family are phosphate butyryltransferase enzymes, also called phosphotransbutyrylase. In general, this enzyme is found in butyrate-producing anaerobic bacteria, encoded next to the gene for butyrate kinase. Together, these two enzymes represent what may be the less common of two pathways for butyrate production from butyryl-CoA. The alternative is transfer of the CoA group to acetate by butyryl-CoA:acetate CoA transferase. This entry does not include the homologue from Thermotoga maritima, whose activity on butyryl-CoA is only 30 0f its activity with acetyl-CoA..
Probab=97.29 E-value=0.0031 Score=39.81 Aligned_cols=228 Identities=22% Similarity=0.317 Sum_probs=146.8
Q ss_pred HHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99842852324898999939999999999818997447538610111267853761033322001355310000024677
Q gi|254780397|r 23 LKAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALPIISSPCGAKIVTGTPNPQTASSTIAN 102 (343)
Q Consensus 23 lKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~~~i~i~~~~~~~~~~~G~~s~~~g~~~~~s 102 (343)
+.|.+.-.-....++|++||.+-+++-++.++.++.=.+ +++.+ ...++
T Consensus 27 lEAvk~A~E~~ia~aiLvGD~~~I~~ia~~~~~~l~d~e---------------Iv~~~----------------~~~~A 75 (295)
T TIGR02706 27 LEAVKEAKEKGIARAILVGDKEKIEEIAKKIGMNLDDYE---------------IVNAP----------------SVKKA 75 (295)
T ss_pred HHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCCCEE---------------EECCC----------------CHHHH
T ss_conf 999999865590678884788999999998489823013---------------22289----------------86899
Q ss_pred HHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHH
Q ss_conf 88776643012343044322344777641013256478999983423588665211233221126653045313334320
Q gi|254780397|r 103 IEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRI 182 (343)
Q Consensus 103 l~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Mll~~~~L~V~l~TtHiPLk~V~~~ 182 (343)
-..|+++.-.|++|.+==|=++-..+-++ -.++. -+||++-+=+||..=|||+.
T Consensus 76 A~~AV~lVs~~~AD~lMKG~V~Ta~~Lrs-------------VLnKE-------------~GLRTGk~lSHVAVFe~P~~ 129 (295)
T TIGR02706 76 ALLAVRLVSTGKADMLMKGLVDTATFLRS-------------VLNKE-------------VGLRTGKVLSHVAVFEVPGF 129 (295)
T ss_pred HHHHHHHHHCCCCCEEECCCCCHHHHHHH-------------HHHHH-------------CCCCCCCCCCCEEEECCCCC
T ss_conf 99999986289864674486555789888-------------85000-------------12104871220677158985
Q ss_pred -----C------CHHHHHHHHHHHHHHHH--HHCCCCCCEEEEEE----ECCCCCCCCCCCCCCCHHHHHHHHHHHHC--
Q ss_conf -----1------02456788898999998--53134567079996----36654453100001210244588864215--
Q gi|254780397|r 183 -----L------STKRIIETSDTVYNAMK--KYFGINNPRIAISG----LNPHAGENATIGIEEKNIIIPAITYLRND-- 243 (343)
Q Consensus 183 -----i------t~~~I~~ki~~~~~~l~--~~~gi~~PkIaV~g----LNPHAGE~G~~G~EE~~iI~PaI~~~~~~-- 243 (343)
| |-=.+.+|+.+++++.+ +..||..||+|++| .||-= +-++=.=+..+++++
T Consensus 130 dRLl~lTDaAfN~yP~Lk~K~~ii~NaV~VAha~Gi~~PkVA~l~AVEvVNP~M---------~aTvDAA~LakM~~RGQ 200 (295)
T TIGR02706 130 DRLLFLTDAAFNIYPELKDKVQIINNAVKVAHAIGIEVPKVAVLAAVEVVNPKM---------PATVDAAALAKMSDRGQ 200 (295)
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEECCCC---------HHHHHHHHHHHHCCCCC
T ss_conf 514323126650287878999997647550232178868611530263566887---------15799999840020684
Q ss_pred --CCCCCCCCCCHHHEECC-----------CCCCCCEEEEEECCHHHHHHHHHCC-C----CEEEEEEECCEEEECCCCC
Q ss_conf --87643455511210002-----------2366768999851202255554144-7----7279992087647558875
Q gi|254780397|r 244 --NKNIIGPLPADSMFHHS-----------ARQCYDVAICMYHDQALIPIKTLDF-N----QTVNITLGLPFVRTSPDHG 305 (343)
Q Consensus 244 --g~~v~GP~paDt~F~~~-----------~~~~~D~vlamYHDQglip~K~l~f-~----~~Vn~t~GLp~irtSpdHG 305 (343)
|.-|+|||.=|-+-... .-++=|..|-===+-|-+-.|+|-+ - .||=+=--=|+|=||
T Consensus 201 IkGCivDGPLALDnA~S~eAA~HKgi~~r~VAG~ADILL~P~IeaGN~lYK~LtY~a~~k~gg~l~GtkaPvvLTS---- 276 (295)
T TIGR02706 201 IKGCIVDGPLALDNAISEEAAKHKGIEGREVAGKADILLVPDIEAGNVLYKTLTYFAKSKNGGILVGTKAPVVLTS---- 276 (295)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCEEECC----
T ss_conf 5678874734445773189997088567732678854212872025669999999971111458603778736335----
Q ss_pred CCHHHCCCCCCCH-HHHHHHHHHHH
Q ss_conf 5222133686683-89999999999
Q gi|254780397|r 306 TAFDIAGSSLTQE-ESLVSALKIAA 329 (343)
Q Consensus 306 Tafdiagk~~a~~-~s~~~ai~~a~ 329 (343)
+||. ++=.+||=||.
T Consensus 277 ---------RADS~E~K~~SIALAa 292 (295)
T TIGR02706 277 ---------RADSFETKLNSIALAA 292 (295)
T ss_pred ---------CCCHHHHHHHHHHHHH
T ss_conf ---------5530446899999999
No 35
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=97.27 E-value=0.00038 Score=45.29 Aligned_cols=138 Identities=17% Similarity=0.207 Sum_probs=76.0
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEE-EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCHHHEE
Q ss_conf 2010245678889899999853134567079-996366544531000012102445888642158764-34555112100
Q gi|254780397|r 181 RILSTKRIIETSDTVYNAMKKYFGINNPRIA-ISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNI-IGPLPADSMFH 258 (343)
Q Consensus 181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIa-V~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v-~GP~paDt~F~ 258 (343)
+.+|++...+-++...+.-++. + ++ |+- |-==|==.--.|+|- | +.++.-++--+| .-++-.|.+-.
T Consensus 142 ~~~tr~~~~Ri~r~AF~~A~~~-~-rk-~Vt~v~KaNvl~~~~glf~-~-------~~~eva~~yP~i~~~~~~vDa~~~ 210 (334)
T PRK08997 142 SIITRQGAERIVRFAYELARKE-G-RK-KVTAVHKANIMKSTSGLFL-K-------VAREVALRYPDIEFEEMIVDATCM 210 (334)
T ss_pred EEECHHHHHHHHHHHHHHHHHC-C-CC-CEEEEECCCCHHHHHHHHH-H-------HHHHHHHHCCCCEEEEEEHHHHHH
T ss_conf 9965777637999999999963-9-98-3589984431132578999-9-------999998656886589876999999
Q ss_pred CC--CCCCCCEEEE--EEC----CHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 02--2366768999--851----202255554144772799920876475588755222133686683899999999999
Q gi|254780397|r 259 HS--ARQCYDVAIC--MYH----DQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQ 330 (343)
Q Consensus 259 ~~--~~~~~D~vla--mYH----DQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~ 330 (343)
.- +-.+||++|+ ||= |++---.-.++.--+.|+ |=..----|-||||.||||||+|||.+|+.|.-+-++
T Consensus 211 ~lv~~P~~fDVivt~NlfGDIlSDlaa~l~GglGl~psani--g~~~a~fEp~HGsApdiaGk~iANP~a~IlS~amML~ 288 (334)
T PRK08997 211 QLVMNPEQFDVIVTTNLFGDILSDLCAGLVGGLGMAPGANI--GRDAAIFEAVHGSAPDIAGKNLANPTSVILAAIQMLE 288 (334)
T ss_pred HHHCCHHHCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCC--CCCCEEEECCCCCCHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 99619343766621545677888899886076445665344--8986476438887254469987595999999999999
Q ss_pred H
Q ss_conf 9
Q gi|254780397|r 331 L 331 (343)
Q Consensus 331 ~ 331 (343)
.
T Consensus 289 ~ 289 (334)
T PRK08997 289 Y 289 (334)
T ss_pred H
T ss_conf 8
No 36
>pfam00180 Iso_dh Isocitrate/isopropylmalate dehydrogenase.
Probab=97.25 E-value=0.00063 Score=43.98 Aligned_cols=140 Identities=14% Similarity=0.228 Sum_probs=74.5
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCHHHEEC
Q ss_conf 2010245678889899999853134567079996366544531000012102445888642158764-345551121000
Q gi|254780397|r 181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNI-IGPLPADSMFHH 259 (343)
Q Consensus 181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v-~GP~paDt~F~~ 259 (343)
+.+|++.+.+-++...+.-++. + ++ | |+...-.. .+-.- .-+-.-+.+.++++--+| .-.+-.|.+-..
T Consensus 157 ~~~Tr~~~~Riar~AF~~A~~r-~-r~-~--Vt~v~KaN----vl~~~-~~~~~~~~e~~~~~yp~I~~~~~~vDa~~~~ 226 (349)
T pfam00180 157 KLYSRDEIERIARVAFELARKR-G-RK-K--VTSVDKAN----VLKSS-RLWREIVEEVAKEEYPDVELEHMLVDNAAMQ 226 (349)
T ss_pred EEEEHHHHHHHHHHHHHHHHHC-C-CC-E--EEEEECCC----CCCHH-HHHHHHHHHHHHHHCCCCCEEEECHHHHHHH
T ss_conf 7567899999999999999866-9-97-2--99973587----43100-6889999999997678851565007699999
Q ss_pred C--CCCCCCEEEE--EECCH----HHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 2--2366768999--85120----22555541447727999208764755887552221336866838999999999999
Q gi|254780397|r 260 S--ARQCYDVAIC--MYHDQ----ALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQL 331 (343)
Q Consensus 260 ~--~~~~~D~vla--mYHDQ----glip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~ 331 (343)
- .=.+||++|+ ||=|= +-.-+=.++.--+.|+--- -+----|-||+|-||||||+|||.+|+-|.-+-++.
T Consensus 227 lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGlaps~nig~~-~~a~fEp~HGSApdiaGk~iANP~a~Ils~amML~h 305 (349)
T pfam00180 227 LVKNPKQFDVIVTENLFGDILSDEASMLTGSLGMLPSASLGAS-GFALFEPVHGSAPDIAGKGKANPIATILSAAMMLRH 305 (349)
T ss_pred HHCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC-CCEEEECCCCCHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 8219666876630662046888888885386323553425897-613563356860543699876949999999999985
No 37
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=97.04 E-value=0.00048 Score=44.67 Aligned_cols=136 Identities=16% Similarity=0.206 Sum_probs=73.9
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHCCCCCCEE-EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHC--CCCCCCCCCCH--
Q ss_conf 3201024567888989999985313456707-999636654453100001210244588864215--87643455511--
Q gi|254780397|r 180 CRILSTKRIIETSDTVYNAMKKYFGINNPRI-AISGLNPHAGENATIGIEEKNIIIPAITYLRND--NKNIIGPLPAD-- 254 (343)
Q Consensus 180 ~~~it~~~I~~ki~~~~~~l~~~~gi~~PkI-aV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~--g~~v~GP~paD-- 254 (343)
.+.+|...+.+-++...+.-++. + +.|+ .|-==|=-.=-+|+ -+|..+.+. ++ .+.++ .+=-|
T Consensus 150 ~~~~Tr~~~eRI~r~AFe~A~~R-~--~kkvTsv~KaNVl~~s~~l-wrev~~eva-------~~yPdv~~~-~~~VD~a 217 (348)
T COG0473 150 TKVITRKGSERIARFAFELARKR-G--RKKVTSVHKANVLKLSDGL-WREVVEEVA-------KEYPDVELD-HMYVDAA 217 (348)
T ss_pred EEEECHHHHHHHHHHHHHHHHHH-C--CCCEEEEEHHHHHHHHHHH-HHHHHHHHH-------HCCCCCCHH-HHHHHHH
T ss_conf 87500888999999999999960-7--9946898600105653678-999999986-------118986144-6748899
Q ss_pred HHEECCCCCCCCEEEE--EECCH------------HHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHH
Q ss_conf 2100022366768999--85120------------225555414477279992087647558875522213368668389
Q gi|254780397|r 255 SMFHHSARQCYDVAIC--MYHDQ------------ALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEES 320 (343)
Q Consensus 255 t~F~~~~~~~~D~vla--mYHDQ------------glip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s 320 (343)
++..-..=++||++|+ ||-|= ||.|==-++-+++ +----|-||+|.||||||+|||..
T Consensus 218 am~lV~~P~~FDViVt~NlFGDILSD~aa~l~GslGl~PSAnig~~~~--------~~lfEPvHGSAPDIAGkgiANPiA 289 (348)
T COG0473 218 AMQLVRNPEQFDVIVTSNLFGDILSDEAAALTGSLGLAPSANLGDERG--------PALFEPVHGSAPDIAGKGIANPIA 289 (348)
T ss_pred HHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--------CCEEECCCCCCCCCCCCCCCCHHH
T ss_conf 999860932067897765316888768887437644576575699888--------730301788765546887668499
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999852
Q gi|254780397|r 321 LVSALKIAAQLGYQK 335 (343)
Q Consensus 321 ~~~ai~~a~~~~~~~ 335 (343)
++-|.-|-++..-++
T Consensus 290 ~IlS~aMML~~~g~~ 304 (348)
T COG0473 290 TILSAAMMLRHLGEK 304 (348)
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 999999999986880
No 38
>TIGR03270 methan_mark_4 putative methanogen marker protein 4. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely linked to it. Some members have been suggested to be a methyltransferase, based on the proximity of its gene to genes of the multi-subunit complex, N5-methyl-tetrahydromethanopterin--coenzyme M methyltransferase. That context is not conserved, however. The family shows similarity to various phosphate acyltranferases.
Probab=96.97 E-value=0.016 Score=35.52 Aligned_cols=178 Identities=21% Similarity=0.237 Sum_probs=96.8
Q ss_pred HHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCC--CCCCCCEEEEECCCCCHHHHHH
Q ss_conf 87766430123430443223447776410132564789999834235886652112--3322112665304531333432
Q gi|254780397|r 104 EKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMM--LSGPQLRTVPVTIHIPIADICR 181 (343)
Q Consensus 104 ~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Ml--l~~~~L~V~l~TtHiPLk~V~~ 181 (343)
+..+++..+|++|+.|-|-++-+.+... |-+..+. -....++ ..++.|-.+++-.-+
T Consensus 8 ~~li~~l~~g~~d~~vRGsl~as~~l~~----------Lk~~~g~----~~r~slL~~~~g~~f~lapvgIde------- 66 (202)
T TIGR03270 8 EELIDDLVNGRLDAAVRGSLSSSNTIRE----------LKKALGK----IYRASILETADGRIFLLAPVGIDE------- 66 (202)
T ss_pred HHHHHHHHCCCCCEEEEECCCHHHHHHH----------HHHHCCC----EEEEEEEECCCCCEEEECCCCCCC-------
T ss_conf 9999998668656688504428889999----------9973273----574353324789789964652257-------
Q ss_pred HCCHHHHHHHHHHHH---HHHHHHCCCCCCEEEEEEECCCCCCCCCCC-CCCCHH-HHHHHHHHHH--CCCCCC--CCCC
Q ss_conf 010245678889899---999853134567079996366544531000-012102-4458886421--587643--4555
Q gi|254780397|r 182 ILSTKRIIETSDTVY---NAMKKYFGINNPRIAISGLNPHAGENATIG-IEEKNI-IIPAITYLRN--DNKNII--GPLP 252 (343)
Q Consensus 182 ~it~~~I~~ki~~~~---~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G-~EE~~i-I~PaI~~~~~--~g~~v~--GP~p 252 (343)
...+.+|++++. +.+ +.||+ .||+||+. +|.-|.+| +++++- |.-+=..++. .++.+. |-+.
T Consensus 67 ---~~~~~~K~~Ii~~a~~~~-r~lGi-ePKVAvLS----~grl~d~gr~~~Id~si~d~e~~~~~~~~~~~a~h~gIli 137 (202)
T TIGR03270 67 ---GWTISDKVKIIELASEFL-RRLGR-EPKVAVLS----GGRLGDVGRSPEVDRSIADGELIARLLKDGMEIEHYGILI 137 (202)
T ss_pred ---CCCHHHHHHHHHHHHHHH-HHCCC-CCCEEEEE----CCCHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHEECCEEE
T ss_conf ---868899999999999999-98099-98559886----4402105767542215875899998630550002432531
Q ss_pred CHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEE----EEEE--CCEEEECCCCCCCHHHCCCCCCCHHHHHHHHH
Q ss_conf 11210002236676899985120225555414477279----9920--87647558875522213368668389999999
Q gi|254780397|r 253 ADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVN----ITLG--LPFVRTSPDHGTAFDIAGSSLTQEESLVSALK 326 (343)
Q Consensus 253 aDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn----~t~G--Lp~irtSpdHGTafdiagk~~a~~~s~~~ai~ 326 (343)
-| ...+++|.+++-==.-|-+-||++.|-.+.- +.+| -|||-||-. .+.+.+.+|+.
T Consensus 138 E~-----av~~~adiiiaPDg~sGNllfr~l~~l~~~~~~Ga~vlg~~~~~VdTSRa------------~s~e~y~~al~ 200 (202)
T TIGR03270 138 EE-----ALKDGSNVIIAPDGISGNLIFRSLALVGGGRSYGAPVLNDEGVFVDTSRS------------QTAEGYYNALK 200 (202)
T ss_pred EH-----HHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCEEECCCC------------CCHHHHHHHHH
T ss_conf 05-----44587898981572120299999999748765673012687617976767------------65578877775
Q ss_pred HH
Q ss_conf 99
Q gi|254780397|r 327 IA 328 (343)
Q Consensus 327 ~a 328 (343)
+|
T Consensus 201 lA 202 (202)
T TIGR03270 201 LA 202 (202)
T ss_pred CC
T ss_conf 29
No 39
>PRK08194 tartrate dehydrogenase; Provisional
Probab=96.88 E-value=0.00084 Score=43.24 Aligned_cols=137 Identities=15% Similarity=0.141 Sum_probs=72.3
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC--CCCCCCCCCCCCCCHHHHHHHHHHHHC--CCCCCCCCCCHHH
Q ss_conf 201024567888989999985313456707999636--654453100001210244588864215--8764345551121
Q gi|254780397|r 181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLN--PHAGENATIGIEEKNIIIPAITYLRND--NKNIIGPLPADSM 256 (343)
Q Consensus 181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLN--PHAGE~G~~G~EE~~iI~PaI~~~~~~--g~~v~GP~paDt~ 256 (343)
+.+|++...+-++...+.-++. ++.-..|-==| .+. .|++ +|.- ++.-++ .+.++ ..-.|.+
T Consensus 156 ~~~Tr~~~eRi~r~Af~~A~~r---rk~vt~v~KaNi~~~t--~~lf-~~~~-------~eva~~yp~v~~~-~~~vD~~ 221 (352)
T PRK08194 156 AVFTRKGTERAMRYAFELAAKR---RKHVTSATKSNGIVYT--MPFW-DEVF-------QEVGKDYPEVEAD-SQHIDAL 221 (352)
T ss_pred EEECHHHHHHHHHHHHHHHHHC---CCCEEEEECCHHHHHH--HHHH-HHHH-------HHHHHHCCCHHHH-HHHHHHH
T ss_conf 7730999999999999998647---9853665054566627--9999-9999-------9999875523455-7769999
Q ss_pred EECC--CCCCCCEEEE--EECCH----HHHHHHHHCCCCEEEEEE-ECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHH
Q ss_conf 0002--2366768999--85120----225555414477279992-0876475588755222133686683899999999
Q gi|254780397|r 257 FHHS--ARQCYDVAIC--MYHDQ----ALIPIKTLDFNQTVNITL-GLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKI 327 (343)
Q Consensus 257 F~~~--~~~~~D~vla--mYHDQ----glip~K~l~f~~~Vn~t~-GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~ 327 (343)
...- +=.+||++|+ ||=|= +--=.=.++.--+.|+-- |--+----|-||||-||||||+|||.+|+-|.-+
T Consensus 222 ~~~lv~~P~~fDVivt~Nl~GDIlSD~aa~l~GglGl~psani~~~g~~~a~fEp~HGSApdiAGk~iaNP~a~IlS~am 301 (352)
T PRK08194 222 AAFFVTRPEEFDVIVASNLFGDILTDIGAAIMGSIGIAPAANINVNGKYPSMFEPVHGSAPDIAGKGIANPIGQIWTAKL 301 (352)
T ss_pred HHHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCEECCCCCCCEEECCCCCCCHHHCCCCCCCCHHHHHHHHH
T ss_conf 99755299656889877810778888998853874446655066788843120244576332279997594999999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780397|r 328 AAQL 331 (343)
Q Consensus 328 a~~~ 331 (343)
-++.
T Consensus 302 ML~~ 305 (352)
T PRK08194 302 MLDH 305 (352)
T ss_pred HHHH
T ss_conf 9998
No 40
>PRK06451 isocitrate dehydrogenase; Validated
Probab=96.87 E-value=0.00093 Score=42.97 Aligned_cols=77 Identities=23% Similarity=0.289 Sum_probs=49.6
Q ss_pred CHHHEECCCC--CCCCEEEE--EECCH----HHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHH
Q ss_conf 1121000223--66768999--85120----2255554144772799920876475588755222133686683899999
Q gi|254780397|r 253 ADSMFHHSAR--QCYDVAIC--MYHDQ----ALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSA 324 (343)
Q Consensus 253 aDt~F~~~~~--~~~D~vla--mYHDQ----glip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~a 324 (343)
+|.+...-.+ .+||++|+ ||=|= +-.-.=.++.--+-|+ |=..----|-||+|.||||||+|||.+++-|
T Consensus 278 vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GglGl~psani--g~~~a~FEpvHGSAPdiaGk~iANP~a~ILS 355 (415)
T PRK06451 278 ADNMFQQIITRPDEYDIILAPNVNGDYISDAAGALIGNIGMLGGANI--GDTGGMFEAIHGTAPKYAGKNVANPTGIIKG 355 (415)
T ss_pred HHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCC--CCCCEEEECCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 99999998438501798997642057888888874077545664221--8986466558888634257986690999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780397|r 325 LKIAAQL 331 (343)
Q Consensus 325 i~~a~~~ 331 (343)
.-|-++.
T Consensus 356 ~amML~~ 362 (415)
T PRK06451 356 CELMLRF 362 (415)
T ss_pred HHHHHHH
T ss_conf 9999998
No 41
>PRK09222 isocitrate dehydrogenase; Validated
Probab=96.80 E-value=0.0011 Score=42.57 Aligned_cols=137 Identities=17% Similarity=0.203 Sum_probs=70.7
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE-EEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC-CCCCCHHHEE
Q ss_conf 20102456788898999998531345670799-963665445310000121024458886421587643-4555112100
Q gi|254780397|r 181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAI-SGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNII-GPLPADSMFH 258 (343)
Q Consensus 181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV-~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~-GP~paDt~F~ 258 (343)
+.+|+..+.+-++...+.-++. + +.|+-+ -==|=-.=-+|+| +| +.++.-++--+|. --+-.|.+-.
T Consensus 144 k~iTr~g~eRI~r~AFe~A~~~-~--RkkVT~v~KaNVlk~t~gLf-r~-------v~~eVa~eYPdVe~~~~~VD~~am 212 (482)
T PRK09222 144 KLISRSGSEKIIRYAFEYARKN-N--RKKVTCLTKDNIMKMTDGIF-HK-------VFNEIAKEYPDIEAEHYIIDIGAA 212 (482)
T ss_pred EEEEHHHHHHHHHHHHHHHHHC-C--CCEEEEEECCCCHHHHHHHH-HH-------HHHHHHHHCCCCEEEEEEHHHHHH
T ss_conf 9965456437999999999970-9--98079997576206677799-99-------999998677986468877778999
Q ss_pred CCC--CCCCCEEEE--EECCH----HHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 022--366768999--85120----2255554144772799920876475588755222133686683899999999999
Q gi|254780397|r 259 HSA--RQCYDVAIC--MYHDQ----ALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQ 330 (343)
Q Consensus 259 ~~~--~~~~D~vla--mYHDQ----glip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~ 330 (343)
+-. =++||++|+ ||=|= +-.-.=.+++--+-|+ |=-+----|-||+|-||||||+|||.+|+.|--|-++
T Consensus 213 qLV~~P~~FDVIVt~NLfGDILSD~aa~l~GslGlapSani--G~~~amFEpvHGSAPDIAGk~iANP~a~ILSaaMML~ 290 (482)
T PRK09222 213 RLATNPENFDVIVTSNLYGDIISDIAAEISGSVGLAGSANI--GEEYAMFEAVHGSAPDIAGKNIANPSGLLNAAVMMLV 290 (482)
T ss_pred HHHCCHHHCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCC--CCCCEEEECCCCCCHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 98568455978998864067888898885277554444534--8986688778886112368987590999999999999
No 42
>PRK07362 isocitrate dehydrogenase; Validated
Probab=96.80 E-value=0.0011 Score=42.60 Aligned_cols=77 Identities=23% Similarity=0.204 Sum_probs=50.2
Q ss_pred CCHHHEECCC--CCCCCEEEEE--ECC----HHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHH
Q ss_conf 5112100022--3667689998--512----0225555414477279992087647558875522213368668389999
Q gi|254780397|r 252 PADSMFHHSA--RQCYDVAICM--YHD----QALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVS 323 (343)
Q Consensus 252 paDt~F~~~~--~~~~D~vlam--YHD----Qglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ 323 (343)
-+|.++-.-. -.+||+++++ |=| .+-.-.=-++.--|.|+-=+ .----|-||||.||||||+|||.|++-
T Consensus 338 i~D~~~~qlv~~P~~fDVIvt~NL~GDiLSDl~AalvGGlGiAPgaNIg~~--~A~FEpvHGSAPdiAGk~~ANP~A~IL 415 (474)
T PRK07362 338 IADSIFQQIQTRPQEYSILATLNLNGDYISDAAAAIVGGLGMAPGANIGDN--AAIFEATHGTAPKHAGLDRINPGSVIL 415 (474)
T ss_pred HHHHHHHHHHHCHHHCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCC--CEEEECCCCCCCCCCCCCCCCHHHHHH
T ss_conf 999999999739253376663133431465678874287655664423888--568866888751103798669299999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780397|r 324 ALKIAAQ 330 (343)
Q Consensus 324 ai~~a~~ 330 (343)
|--|-++
T Consensus 416 S~aMML~ 422 (474)
T PRK07362 416 SGVMMLE 422 (474)
T ss_pred HHHHHHH
T ss_conf 9999999
No 43
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=96.69 E-value=0.0014 Score=41.87 Aligned_cols=137 Identities=15% Similarity=0.242 Sum_probs=76.5
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCCCCCHHHEEC
Q ss_conf 2010245678889899999853134567079996366544531000012102445888642158764-345551121000
Q gi|254780397|r 181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNI-IGPLPADSMFHH 259 (343)
Q Consensus 181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v-~GP~paDt~F~~ 259 (343)
+.+|++...+-++...+.-++. +.|+-++ |-+ |-+ -.-+ ...-+.++.-++--+| .-..-.|.+...
T Consensus 157 ~~iTr~~~eRi~r~Af~~A~~r----rkkVt~v----hKa-Nvm-k~~~--lf~~~~~eva~~yp~I~~~~~~vDa~~~~ 224 (352)
T PRK00772 157 MVYTREEIERIARVAFELARKR----RKKVTSV----DKA-NVL-ESSQ--LWREVVTEVAKEYPDVELEHMYVDNAAMQ 224 (352)
T ss_pred EEECHHHHHHHHHHHHHHHHHC----CCCEEEE----ECC-CCC-CHHH--HHHHHHHHHHHHCCCCEEEEEEHHHHHHH
T ss_conf 8853999999999999999856----9946999----766-430-0479--99999999851269845888566699999
Q ss_pred CCC--CCCCEEEE--EECCH----HHHHHHHHCCCCEEEEEEECC-EEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 223--66768999--85120----225555414477279992087-6475588755222133686683899999999999
Q gi|254780397|r 260 SAR--QCYDVAIC--MYHDQ----ALIPIKTLDFNQTVNITLGLP-FVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQ 330 (343)
Q Consensus 260 ~~~--~~~D~vla--mYHDQ----glip~K~l~f~~~Vn~t~GLp-~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~ 330 (343)
-.+ .+||++|+ ||=|= +-.-.=-+++--+.|+ |-. +----|-||||-||||||+|||.+|+-|.-+-++
T Consensus 225 Lv~~P~~fDViV~~NlfGDIlSDlaa~l~GglGlapsani--g~~~~a~FEp~HGSAPdiAGk~iANP~a~ilS~amML~ 302 (352)
T PRK00772 225 LVRNPKQFDVIVTENLFGDILSDEAAMLTGSLGMLPSASL--GESGPGLYEPIHGSAPDIAGKGIANPIATILSAAMMLR 302 (352)
T ss_pred HHCCHHHCCEECCCCHHHHHHHHHHHHHCCCCCCCCCCCC--CCCCCEEECCCCCCCHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 7219575573124633567888899885276435653325--99876133345687344469986592999999999987
Q ss_pred H
Q ss_conf 9
Q gi|254780397|r 331 L 331 (343)
Q Consensus 331 ~ 331 (343)
.
T Consensus 303 ~ 303 (352)
T PRK00772 303 Y 303 (352)
T ss_pred H
T ss_conf 4
No 44
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=96.62 E-value=0.0017 Score=41.35 Aligned_cols=138 Identities=13% Similarity=0.163 Sum_probs=69.9
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-EECCCCCCCCCCCCCCCHHHHHHHHHHHHC--CCCCCCCCCCHHHE
Q ss_conf 201024567888989999985313456707999-636654453100001210244588864215--87643455511210
Q gi|254780397|r 181 RILSTKRIIETSDTVYNAMKKYFGINNPRIAIS-GLNPHAGENATIGIEEKNIIIPAITYLRND--NKNIIGPLPADSMF 257 (343)
Q Consensus 181 ~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~-gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~--g~~v~GP~paDt~F 257 (343)
+.+|+..+.+-++...+.-++. +.|+-+. ==|=..=-+|++ +| +.++..++ .+.+ ...-.|.+-
T Consensus 155 ~~~Tr~~~eRI~r~Af~~A~~r----rkkvt~v~KaNVl~~s~glf-~~-------~~~eva~~yp~v~~-~~~~vD~~a 221 (345)
T PRK03437 155 SVNTAFGVERVVRDAFERAQKR----RKHLTLVHKTNVLTFAGDLW-QR-------TVDEVAAEYPDVEV-DYQHVDAAT 221 (345)
T ss_pred EEECHHHHHHHHHHHHHHHHHC----CCCEEEEECCCHHHHHHHHH-HH-------HHHHHHHHCCCCEE-EEEEHHHHH
T ss_conf 9741898899999999999963----89568996772277778899-99-------99998614588457-762486899
Q ss_pred EC--CCCCCCCEEEE--EECC----HHHHHHHHHCCCCEEEEEE-ECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 00--22366768999--8512----0225555414477279992-08764755887552221336866838999999999
Q gi|254780397|r 258 HH--SARQCYDVAIC--MYHD----QALIPIKTLDFNQTVNITL-GLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIA 328 (343)
Q Consensus 258 ~~--~~~~~~D~vla--mYHD----Qglip~K~l~f~~~Vn~t~-GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a 328 (343)
.. .+=.+||++|+ ||=| ++-.-.=.+++--+.|+.- |--+----|-||||-||||||+|||.+|+-|.-+-
T Consensus 222 ~~lv~~P~~fDVivt~NlfGDIlSD~aa~l~GglGl~psani~~~g~~~~~fEpvHGSAPdiAGk~iANP~a~IlS~amM 301 (345)
T PRK03437 222 IFMVTDPGRFDVIVTDNLFGDIITDLAAAVCGGIGLAASGNINPTGTNPSMFEPVHGSAPDIAGQGIADPTAAILSVALL 301 (345)
T ss_pred HHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHCCCCCCCCHHHHHHHHHH
T ss_conf 99722965385673356422588888888517643476663066787533545366865555699875919999999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780397|r 329 AQL 331 (343)
Q Consensus 329 ~~~ 331 (343)
++.
T Consensus 302 L~~ 304 (345)
T PRK03437 302 LDH 304 (345)
T ss_pred HHH
T ss_conf 998
No 45
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=96.61 E-value=0.0018 Score=41.24 Aligned_cols=77 Identities=19% Similarity=0.214 Sum_probs=49.8
Q ss_pred CHHHEECC--CCCCCCEEEE--EECC----HHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHH
Q ss_conf 11210002--2366768999--8512----02255554144772799920876475588755222133686683899999
Q gi|254780397|r 253 ADSMFHHS--ARQCYDVAIC--MYHD----QALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSA 324 (343)
Q Consensus 253 aDt~F~~~--~~~~~D~vla--mYHD----Qglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~a 324 (343)
+|.+-..- .-.+||++|+ ||=| ++-.-.=.+++--+.|+- =.+----|-||||-||||||+|||.+|+-|
T Consensus 275 vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GglGl~pSanig--~~~amfEpvHGSAPdiAGk~iANP~A~ILS 352 (409)
T PRK07006 275 ADAFLQQILLRPAEYDVIATMNLNGDYISDALAAQVGGIGIAPGANIN--DGHAIFEATHGTAPKYAGLDKVNPGSVILS 352 (409)
T ss_pred HHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCC--CCCEEEECCCCCHHHHCCCCCCCHHHHHHH
T ss_conf 999999996396455479875520588999999861774235676568--986688658886166569987590999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780397|r 325 LKIAAQL 331 (343)
Q Consensus 325 i~~a~~~ 331 (343)
.-|-++-
T Consensus 353 ~amML~~ 359 (409)
T PRK07006 353 AEMMLRH 359 (409)
T ss_pred HHHHHHH
T ss_conf 9999998
No 46
>TIGR02924 ICDH_alpha isocitrate dehydrogenase; InterPro: IPR014273 This entry represents a group of isocitrate dehydrogenases found mainly in the alphaproteobacteria. Many of the species containing these proteins appear to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 from EC vs. NADPH -- 1.1.1.42 from EC) is unclear..
Probab=96.51 E-value=0.0011 Score=42.49 Aligned_cols=22 Identities=41% Similarity=0.659 Sum_probs=21.0
Q ss_pred CCCCHHHCCCCCCCHHHHHHHH
Q ss_conf 7552221336866838999999
Q gi|254780397|r 304 HGTAFDIAGSSLTQEESLVSAL 325 (343)
Q Consensus 304 HGTafdiagk~~a~~~s~~~ai 325 (343)
||.|=|||||++|||+.|++|-
T Consensus 260 HGSAPdIAGknIANPSGLLNAA 281 (481)
T TIGR02924 260 HGSAPDIAGKNIANPSGLLNAA 281 (481)
T ss_pred CCCCCCCCCCCCCCHHHHHHHH
T ss_conf 2778541566766700579999
No 47
>TIGR02089 TTC tartrate dehydrogenase; InterPro: IPR011829 Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate . These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in IPR004429 from INTERPRO and IPR011828 from INTERPRO, respectively.; GO: 0009027 tartrate dehydrogenase activity, 0051287 NAD binding.
Probab=96.47 E-value=0.001 Score=42.77 Aligned_cols=28 Identities=39% Similarity=0.527 Sum_probs=21.1
Q ss_pred CCCCCCCHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 5887552221336866838999999999999
Q gi|254780397|r 301 SPDHGTAFDIAGSSLTQEESLVSALKIAAQL 331 (343)
Q Consensus 301 SpdHGTafdiagk~~a~~~s~~~ai~~a~~~ 331 (343)
-|=||.|+||||||+|||-. +|=.|+.|
T Consensus 280 EPVHGSAPDIaG~GIANPIg---~iWtaa~M 307 (355)
T TIGR02089 280 EPVHGSAPDIAGKGIANPIG---AIWTAALM 307 (355)
T ss_pred CCCCCCCHHHCCCCCCCHHH---HHHHHHHH
T ss_conf 36788845140577634368---99999987
No 48
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=94.96 E-value=0.047 Score=32.73 Aligned_cols=96 Identities=19% Similarity=0.096 Sum_probs=68.6
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHEECCCC--CCCCEEEEEEC------CHHHHHHHHHCCCCEEEEEEECCEEEECCCC
Q ss_conf 445888642158764345551121000223--66768999851------2022555541447727999208764755887
Q gi|254780397|r 233 IIPAITYLRNDNKNIIGPLPADSMFHHSAR--QCYDVAICMYH------DQALIPIKTLDFNQTVNITLGLPFVRTSPDH 304 (343)
Q Consensus 233 I~PaI~~~~~~g~~v~GP~paDt~F~~~~~--~~~D~vlamYH------DQglip~K~l~f~~~Vn~t~GLp~irtSpdH 304 (343)
-.|..+.+...|.-+.---=||.+|-.... +.||++.||-- |-.-.-+=-+++--|+|++. -..-.-+-|
T Consensus 251 ~~~~~~~~~~~gkI~~~driaD~mlqQil~r~~eydViA~~NlnGDy~SDa~Aa~vGglGi~pgani~~--~~~~fEA~H 328 (407)
T COG0538 251 GKEKFELKGPKGKIVYKDRIADDMLQQILLRPGEYDVIATKNLNGDYISDALAAQVGGLGLAPGANIGD--GTAEFEATH 328 (407)
T ss_pred CCHHHHHCCCCCEEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEECC--CEEEEEECC
T ss_conf 545454127776499842348999999962987744999636786478789997538765135313268--559997236
Q ss_pred CCCHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 55222133686683899999999999
Q gi|254780397|r 305 GTAFDIAGSSLTQEESLVSALKIAAQ 330 (343)
Q Consensus 305 GTafdiagk~~a~~~s~~~ai~~a~~ 330 (343)
|||=..||++.+||.|.+-|-.+.++
T Consensus 329 GTapk~aG~~~~Np~a~Ils~~~ml~ 354 (407)
T COG0538 329 GTAPKYAGKDSTNPIASILSGTMMLR 354 (407)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 76500067677783899999999999
No 49
>KOG0785 consensus
Probab=94.04 E-value=0.065 Score=31.90 Aligned_cols=136 Identities=18% Similarity=0.262 Sum_probs=72.4
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-EECCCCCCCCCCCCCCCHHHHHHHHHHHHC--CCCCCCCCC
Q ss_conf 33343201024567888989999985313456707999-636654453100001210244588864215--876434555
Q gi|254780397|r 176 IADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAIS-GLNPHAGENATIGIEEKNIIIPAITYLRND--NKNIIGPLP 252 (343)
Q Consensus 176 Lk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~-gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~--g~~v~GP~p 252 (343)
.-+-.+.||++.-.+-++...+.-++. .++|+-|. --|=--=-+|+|= -+.++..++ .|..+- --
T Consensus 168 VvqsiK~IT~~AS~Ria~~AF~yAr~~---~R~~vtvvHKaNImr~tDGLFl--------e~cre~a~~y~dI~~eE-~~ 235 (365)
T KOG0785 168 VVQSIKLITEAASRRIAEYAFEYARQN---GRKRVTVVHKANIMRMTDGLFL--------ECCREVAKKYPDIKFEE-QY 235 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCEEEEEHHHHHHHCCHHHH--------HHHHHHHHHCCCCCHHH-HH
T ss_conf 999999998999999999999999972---8872689852003323202799--------99998762078632258-88
Q ss_pred CHHHEECCCC--CCCCEEE--EEECCH------HHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHH
Q ss_conf 1121000223--6676899--985120------22555541447727999208764755887552221336866838999
Q gi|254780397|r 253 ADSMFHHSAR--QCYDVAI--CMYHDQ------ALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLV 322 (343)
Q Consensus 253 aDt~F~~~~~--~~~D~vl--amYHDQ------glip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~ 322 (343)
-||+-.+-.+ ..||++| .||-|- ||+.- |+.--+-|+ |.-++---+=||||=|||||++|||..++
T Consensus 236 lDt~~l~lv~~P~~~DVlV~PNLYGDIlSD~~agLvGg--LGltPS~Ni--G~g~~~~e~vHGsAPDIAGkdlANPtAll 311 (365)
T KOG0785 236 LDTCCLKLVRNPSCFDVLVMPNLYGDILSDLCAGLVGG--LGLTPSANI--GDGIVIFEAVHGSAPDIAGKDLANPTALL 311 (365)
T ss_pred HHHHHHHHHCCCHHCEEEECCCHHHHHHHHHHHHHCCC--CCCCCCCCC--CCCEEEEECCCCCCCCCCCCCCCCCHHHH
T ss_conf 98899999648410227961420277998887775067--666877634--78716620014788332368767847999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780397|r 323 SALKI 327 (343)
Q Consensus 323 ~ai~~ 327 (343)
-+--|
T Consensus 312 lS~vm 316 (365)
T KOG0785 312 LSAVM 316 (365)
T ss_pred HHHHH
T ss_conf 99999
No 50
>TIGR00169 leuB 3-isopropylmalate dehydrogenase; InterPro: IPR004429 Several NAD- or NADP-dependent dehydrogenases, including 3-isopropylmalate dehydrogenase, tartrate dehydrogenase, and the dimeric forms of isocitrate dehydrogenase, share a nucleotide binding domain unrelated to that of lactate dehydrogenase and its homologs. These enzymes dehydrogenate their substates at a H-C-OH site adjacent to a H-C-COOH site; the latter carbon, now adjacent to a carbonyl group, readily decarboxylates. Among these decarboxylating dehydrogenases of hydroxyacids, overall sequence homology indicates evolutionary history rather than actual substrate or cofactor specifity, which may be toggled experimentally by replacement of just a few amino acids. 3-isopropylmalate dehydrogenase is an NAD-dependent enzyme and should have a sequence resembling HGSAPDI around residue 340. The subtrate binding loop should include a sequence resembling E[KQR]X(0,1)LLXXR around residue 115.; GO: 0003862 3-isopropylmalate dehydrogenase activity, 0009098 leucine biosynthetic process, 0005737 cytoplasm.
Probab=93.47 E-value=0.067 Score=31.79 Aligned_cols=55 Identities=22% Similarity=0.332 Sum_probs=35.6
Q ss_pred HHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 2255554144772799920876475588755222133686683899999999999998
Q gi|254780397|r 276 ALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQLGY 333 (343)
Q Consensus 276 glip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~~~ 333 (343)
||-|==.|+-=-+=| |-| +.-.-|-||.|=||||||+|||-.-+-|-=|-++.+-
T Consensus 267 GmLPSASL~~~~~K~-~~g--~~L~EP~HGSAPDIAGkgiANP~A~ILSAAMlLry~f 321 (370)
T TIGR00169 267 GMLPSASLGSLVDKE-EDG--FGLFEPVHGSAPDIAGKGIANPIAQILSAAMLLRYSF 321 (370)
T ss_pred HHHHHHHHCCCCCCC-CCC--CEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 323455431457654-556--5001678888873035788656899999999998507
No 51
>TIGR00651 pta phosphate acetyltransferase; InterPro: IPR004614 Phosphate acetyltransferase (2.3.1.8 from EC) catalyses the conversion of acetyl-CoA and phosphate to CoA and acetyl phosphate in the last two steps in the conversion of actetae to acetyl-CoA.; GO: 0016407 acetyltransferase activity.
Probab=91.83 E-value=1.1 Score=24.55 Aligned_cols=225 Identities=15% Similarity=0.109 Sum_probs=135.4
Q ss_pred HHHHHCCCCHHCCCCEEEECCHHHHHHH---HHHCCCCCCEEECCCCHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCHH
Q ss_conf 9998428523248989999399999999---9981899744753861011126785376103332200135531000002
Q gi|254780397|r 22 SLKAWASRQITAIPPFIYIGDVDVLNAR---AKQLNLSVPLYETDCKNAVSIFKKALPIISSPCGAKIVTGTPNPQTASS 98 (343)
Q Consensus 22 ilKal~~~~~~~~~~~viigd~~~l~~~---~k~l~~~~~i~~i~~~~~~~~~~~~i~i~~~~~~~~~~~G~~s~~~g~~ 98 (343)
++||-....-.+...++++++.+-.+.. ++.++..+....|...+.....+.+. +.-+.....-|--..++-+.
T Consensus 11 ~LkAa~~l~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~E~Y~---~~~~e~RK~KG~t~~~A~~~ 87 (322)
T TIGR00651 11 VLKAAALLAERGIATPVVLGNKEEIVKNAKEAANCNLDLGKVVIIDPDVSPDRESYA---ERYYELRKHKGVTLAQARKQ 87 (322)
T ss_pred HHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHH---HHHHHHHCCCCCCHHHHHHH
T ss_conf 899999998578743123327246778899987325113745882786742279999---99998741556047999997
Q ss_pred HHHHHHHHHHHHHCCCCCEEEECHHHHH--HHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC--CEEEEECCCC
Q ss_conf 4677887766430123430443223447--77641013256478999983423588665211233221--1266530453
Q gi|254780397|r 99 TIANIEKAVSLTLSGQALAIVTNPIAKF--LLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQ--LRTVPVTIHI 174 (343)
Q Consensus 99 ~~~sl~~A~~l~~~g~~~alVT~PInK~--~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Mll~~~~--L~V~l~TtHi 174 (343)
..+.+..|+-+...|.+||+|-|-.|-. .+.-+ . -.+...-+.+. -..+|+|.-.+ +.|-+.-.|-
T Consensus 88 l~D~~~fa~~mv~~g~aDg~VsGa~~tTa~tlRpa-L------qiI~T~~Gvk~---vSSvFiM~~~~~~~nvdfC~G~~ 157 (322)
T TIGR00651 88 LRDESYFATMMVALGEADGLVSGAVHTTADTLRPA-L------QIIKTLPGVKI---VSSVFIMDTNETALNVDFCFGTR 157 (322)
T ss_pred HHCHHHHHHHHHHCCCCCEEEECCHHHHHHHCCHH-H------HHHCCCCCCEE---EEEEEEECCCCCCCEEEECCCCC
T ss_conf 30457899999870874325504023026540425-6------65203788506---87778865888621010025744
Q ss_pred CH---HHHHHHC--CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHC--CC--
Q ss_conf 13---3343201--024567888989999985313456707999636654453100001210244588864215--87--
Q gi|254780397|r 175 PI---ADICRIL--STKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRND--NK-- 245 (343)
Q Consensus 175 PL---k~V~~~i--t~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~--g~-- 245 (343)
-+ .|=+=.+ |.+.+-+-.....++.+ .|+-..||+|.+..=--.. +|.- .||.|-..-|++.++++ -+
T Consensus 158 ~~l~F~DCAv~~~P~a~~LAeIA~~sA~sak-~f~~~epkVAlLSYST~gS-gGd~-g~~veKV~~A~~I~~Ek~pdL~~ 234 (322)
T TIGR00651 158 EVLVFADCAVNVDPNAEQLAEIAIQSAKSAK-SFGEIEPKVALLSYSTKGS-GGDS-GEEVEKVREATRIAKEKRPDLKA 234 (322)
T ss_pred CEEEEEEEEEECCCCHHHHHHHHHHHHHHHH-HHCCCCCEEEEEEECCCCC-CCCC-HHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 1268851245029887899999999999999-8468996089983024556-5554-13338999999998538713764
Q ss_pred CCCCCCCCHHHEECCCC
Q ss_conf 64345551121000223
Q gi|254780397|r 246 NIIGPLPADSMFHHSAR 262 (343)
Q Consensus 246 ~v~GP~paDt~F~~~~~ 262 (343)
.++||+==|++|.+...
T Consensus 235 ~~dGELQ~DAA~v~~Va 251 (322)
T TIGR00651 235 TIDGELQFDAAVVEKVA 251 (322)
T ss_pred HCCCCHHHHHHHHHHHH
T ss_conf 05873011143238889
No 52
>PRK09222 isocitrate dehydrogenase; Validated
Probab=91.41 E-value=0.19 Score=29.15 Aligned_cols=23 Identities=39% Similarity=0.677 Sum_probs=19.2
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHH
Q ss_conf 9888838997189877478999998
Q gi|254780397|r 1 MDEFLPLILTQGDPAGIGPDISLKA 25 (343)
Q Consensus 1 M~k~~pI~IT~GDPaGIGpEIilKa 25 (343)
|+...||++-.|| ||||||.-.+
T Consensus 1 m~~~~~IaVipGD--GIGPEIm~aa 23 (482)
T PRK09222 1 MAMSTPITVAYGD--GIGPEIMEAV 23 (482)
T ss_pred CCCCCCEEEECCC--CCHHHHHHHH
T ss_conf 9988827998988--7319999999
No 53
>TIGR00169 leuB 3-isopropylmalate dehydrogenase; InterPro: IPR004429 Several NAD- or NADP-dependent dehydrogenases, including 3-isopropylmalate dehydrogenase, tartrate dehydrogenase, and the dimeric forms of isocitrate dehydrogenase, share a nucleotide binding domain unrelated to that of lactate dehydrogenase and its homologs. These enzymes dehydrogenate their substates at a H-C-OH site adjacent to a H-C-COOH site; the latter carbon, now adjacent to a carbonyl group, readily decarboxylates. Among these decarboxylating dehydrogenases of hydroxyacids, overall sequence homology indicates evolutionary history rather than actual substrate or cofactor specifity, which may be toggled experimentally by replacement of just a few amino acids. 3-isopropylmalate dehydrogenase is an NAD-dependent enzyme and should have a sequence resembling HGSAPDI around residue 340. The subtrate binding loop should include a sequence resembling E[KQR]X(0,1)LLXXR around residue 115.; GO: 0003862 3-isopropylmalate dehydrogenase activity, 0009098 leucine biosynthetic process, 0005737 cytoplasm.
Probab=91.08 E-value=0.27 Score=28.22 Aligned_cols=20 Identities=40% Similarity=0.722 Sum_probs=16.8
Q ss_pred CEEEECCCCCCCCHHHHHHHHC
Q ss_conf 3899718987747899999842
Q gi|254780397|r 6 PLILTQGDPAGIGPDISLKAWA 27 (343)
Q Consensus 6 pI~IT~GDPaGIGpEIilKal~ 27 (343)
+|++-.|| ||||||+..|+.
T Consensus 1 ~IaVLPGD--GIGPEi~a~Al~ 20 (370)
T TIGR00169 1 KIAVLPGD--GIGPEIMASALK 20 (370)
T ss_pred CEEECCCC--CCCHHHHHHHHH
T ss_conf 92562797--965548999999
No 54
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=91.05 E-value=0.2 Score=28.97 Aligned_cols=21 Identities=38% Similarity=0.779 Sum_probs=18.7
Q ss_pred CCCCCCEEEECCCCCCCCHHHHH
Q ss_conf 98888389971898774789999
Q gi|254780397|r 1 MDEFLPLILTQGDPAGIGPDISL 23 (343)
Q Consensus 1 M~k~~pI~IT~GDPaGIGpEIil 23 (343)
|++..+|++-.|| ||||||+-
T Consensus 1 M~k~~kI~vipGD--GIGPEV~~ 21 (345)
T PRK03437 1 MAKTMKLAVIPGD--GIGPEVVA 21 (345)
T ss_pred CCCCEEEEEECCC--CCCHHHHH
T ss_conf 9974079997868--73599999
No 55
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent; InterPro: IPR004434 Several NAD- or NADP-dependent dehydrogenases, including 3-isopropylmalate dehydrogenase, tartrate dehydrogenase, and the multimeric forms of isocitrate dehydrogenase, share a nucleotide binding domain unrelated to that of lactate dehydrogenase and its homologs. These enzymes dehydrogenate their substates at a H-C-OH site adjacent to a H-C-COOH site; the latter carbon, now adjacent to a carbonyl group, readily decarboxylates. Mitochondrial NAD-dependent isocitrate dehydrogenases (IDH) resemble prokaryotic NADP-dependent IDH and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent IDH. The mitochondrial NAD-dependent isocitrate dehydrogenase is believed to be an alpha(2)-beta-gamma heterotetramer. All subunits are homologous and belog to this group. The NADP-dependent IDH of Thermus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus. ; GO: 0004449 isocitrate dehydrogenase (NAD+) activity, 0006099 tricarboxylic acid cycle, 0005739 mitochondrion.
Probab=89.34 E-value=0.22 Score=28.72 Aligned_cols=152 Identities=12% Similarity=0.169 Sum_probs=67.2
Q ss_pred CCCHHHHH---HHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHH-HHHCCCCCC
Q ss_conf 53133343---20102456788898999998531345670799963665445310000121024458886-421587643
Q gi|254780397|r 173 HIPIADIC---RILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITY-LRNDNKNII 248 (343)
Q Consensus 173 HiPLk~V~---~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~-~~~~g~~v~ 248 (343)
|...-=|. |.+|+..=.+-++-..++=++ .|- +--.||===|=====+||| .+...-.-++ .. .|..+
T Consensus 137 He~VPGVVESlK~iT~~~seRIA~yAFeyA~~-~gR-K~VTaVHKANIMKL~DGLF----l~~~~eVa~~eYP--~I~~~ 208 (348)
T TIGR00175 137 HESVPGVVESLKVITREKSERIARYAFEYARK-NGR-KKVTAVHKANIMKLADGLF----LEVCREVAKKEYP--DITFE 208 (348)
T ss_pred EEECCCEEEECHHHHHHHHHHHHHHHHHHHHH-CCC-CEEEEEECCCHHHHHHHHH----HHHHHHHHHHCCC--CCCCC
T ss_conf 17869425610201024578899999999997-489-6489982510111100478----9988875553078--87612
Q ss_pred CCCCCHHHEECCCC-CCCC--EEE--EEECCHHHHHHHHHCCCCEEE--EEEECCEEEECC-CCCCCH---HHCCCCCCC
Q ss_conf 45551121000223-6676--899--985120225555414477279--992087647558-875522---213368668
Q gi|254780397|r 249 GPLPADSMFHHSAR-QCYD--VAI--CMYHDQALIPIKTLDFNQTVN--ITLGLPFVRTSP-DHGTAF---DIAGSSLTQ 317 (343)
Q Consensus 249 GP~paDt~F~~~~~-~~~D--~vl--amYHDQglip~K~l~f~~~Vn--~t~GLp~irtSp-dHGTaf---diagk~~a~ 317 (343)
-=+-=-|+.--=.+ .+|| +.| -||=|=.==-.=-|--+-||- --.|=.|+.--| -|+|+- ||+||++||
T Consensus 209 ~~IvDN~cMq~Vs~P~QFDdaVmVmPNLYG~Il~N~~aGL~GG~Gl~pG~N~G~~ya~FE~g~r~~g~Gne~I~G~~~AN 288 (348)
T TIGR00175 209 EMIVDNTCMQLVSRPEQFDDAVMVMPNLYGNILSNLAAGLVGGPGLVPGANVGRDYAVFEPGTRHTGLGNEDIAGKNIAN 288 (348)
T ss_pred CEEEEEHHHCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCC
T ss_conf 03423000014678501077400177765028999998863243447771316743687246678878647771688745
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 389999999999999852
Q gi|254780397|r 318 EESLVSALKIAAQLGYQK 335 (343)
Q Consensus 318 ~~s~~~ai~~a~~~~~~~ 335 (343)
|..|+-| |+.|-++-
T Consensus 289 PTA~iLs---s~~MLnHL 303 (348)
T TIGR00175 289 PTALILS---SVMMLNHL 303 (348)
T ss_pred HHHHHHH---HHHHHHHC
T ss_conf 6899999---99887534
No 56
>PRK08194 tartrate dehydrogenase; Provisional
Probab=85.68 E-value=0.73 Score=25.58 Aligned_cols=22 Identities=27% Similarity=0.626 Sum_probs=17.7
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHH
Q ss_conf 9888838997189877478999998
Q gi|254780397|r 1 MDEFLPLILTQGDPAGIGPDISLKA 25 (343)
Q Consensus 1 M~k~~pI~IT~GDPaGIGpEIilKa 25 (343)
|++ .+|++-.|| ||||||+--+
T Consensus 1 M~~-~~I~vipGD--GIGpEV~~~~ 22 (352)
T PRK08194 1 MKN-FNIAVIPGD--GVGKEVVPAA 22 (352)
T ss_pred CCC-CEEEEECCC--CCHHHHHHHH
T ss_conf 997-469898878--7419999999
No 57
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=85.48 E-value=0.84 Score=25.21 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=18.7
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHC
Q ss_conf 988883899718987747899999842
Q gi|254780397|r 1 MDEFLPLILTQGDPAGIGPDISLKAWA 27 (343)
Q Consensus 1 M~k~~pI~IT~GDPaGIGpEIilKal~ 27 (343)
|...++|++-.|| ||||||+--+.+
T Consensus 16 ~p~~~~IavipGD--GIGpEV~~aa~k 40 (409)
T PRK07006 16 VPNNPIIPFIEGD--GIGVDITPAMIK 40 (409)
T ss_pred CCCCCEEEEECCC--CCCHHHHHHHHH
T ss_conf 8999889997998--656899999999
No 58
>KOG0786 consensus
Probab=84.04 E-value=0.92 Score=24.97 Aligned_cols=128 Identities=22% Similarity=0.278 Sum_probs=64.2
Q ss_pred HCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHEECCC
Q ss_conf 01024567888989999985313456707999636654453100001210244588864215876434555112100022
Q gi|254780397|r 182 ILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNIIGPLPADSMFHHSA 261 (343)
Q Consensus 182 ~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~GP~paDt~F~~~~ 261 (343)
++.+.+++..-++--+...+.|.-..|.+-+. | ..|--|.-.+-+.--...|-+--|-+|..-.
T Consensus 187 slDKANVLa~SrLWRKtV~k~~k~EyP~l~l~----h------------qliDsAAM~LVk~P~~lng~ivT~N~FGDIi 250 (363)
T KOG0786 187 SLDKANVLAASRLWRKTVTKALKSEYPDLELS----H------------QLIDSAAMQLVKDPKQLNGTIVTNNIFGDII 250 (363)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH----H------------HHHHHHHHHHHCCCHHCCCEEEECCCHHHHH
T ss_conf 02035678888999999999988658980612----5------------5564777887449012083687633002332
Q ss_pred CCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 36676899985120225555414477279992087647558875522213368668389999999999999
Q gi|254780397|r 262 RQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQLG 332 (343)
Q Consensus 262 ~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~~ 332 (343)
-++-.++- ---||.|--.|+---.-+--.|| ..|=||+|=|||||+++||-..+-+--+-.++.
T Consensus 251 SDEASvIp---GSlGlLPSASL~~v~~ee~~~gL----~EPiHGSAPDiagk~kvNP~aTILSAamlLkyg 314 (363)
T KOG0786 251 SDEASVIP---GSLGLLPSASLSGVVSEESGPGL----FEPIHGSAPDIAGKDKVNPLATILSAAMLLKYG 314 (363)
T ss_pred CCCCCCCC---CCCCCCCCHHHCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 36312356---74245640221377555667740----024778998867777668199999999999852
No 59
>pfam05014 Nuc_deoxyrib_tr Nucleoside 2-deoxyribosyltransferase. Nucleoside 2-deoxyribosyltransferase EC:2.4.2.6 catalyses the cleavage of the glycosidic bonds of 2`-deoxyribonucleosides.
Probab=77.28 E-value=1.4 Score=23.95 Aligned_cols=50 Identities=12% Similarity=0.227 Sum_probs=25.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCC-----------CHHHEECC--CCCCCCEEEEEEC
Q ss_conf 00001210244588864215876434555-----------11210002--2366768999851
Q gi|254780397|r 224 TIGIEEKNIIIPAITYLRNDNKNIIGPLP-----------ADSMFHHS--ARQCYDVAICMYH 273 (343)
Q Consensus 224 ~~G~EE~~iI~PaI~~~~~~g~~v~GP~p-----------aDt~F~~~--~~~~~D~vlamYH 273 (343)
.|-.+|.+...-..+.+++.|..+.-|.- +..+|... ...+.|++|+.+.
T Consensus 7 ~F~~~~~~~~~~~~~~l~~~g~~~~~P~~~~~~~~~~~~~~~~i~~~D~~~i~~~D~vva~ld 69 (112)
T pfam05014 7 FFSPDQRARVARLRALLEANGFEVFSPLDNEAGLARSPEWARAIFEADLEGLRQADAVVANLD 69 (112)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEC
T ss_conf 589999999999999999869989887745566667779999999999999987999999907
No 60
>PRK13337 putative lipid kinase; Reviewed
Probab=73.59 E-value=4.6 Score=20.77 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=11.4
Q ss_pred HHHHHHHHHHCCCCCEEEECHH
Q ss_conf 7887766430123430443223
Q gi|254780397|r 102 NIEKAVSLTLSGQALAIVTNPI 123 (343)
Q Consensus 102 sl~~A~~l~~~g~~~alVT~PI 123 (343)
.++.|++...+++...+=-+-+
T Consensus 107 ~~~~a~~~i~~g~~~~iDlg~v 128 (305)
T PRK13337 107 DIEGAADVIIEGHSVPVDIGKA 128 (305)
T ss_pred CHHHHHHHHHCCCEEEEEEEEE
T ss_conf 9999998761697599877998
No 61
>PRK13059 putative lipid kinase; Reviewed
Probab=72.97 E-value=3.2 Score=21.74 Aligned_cols=25 Identities=4% Similarity=0.129 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 7888989999985313456707999
Q gi|254780397|r 189 IETSDTVYNAMKKYFGINNPRIAIS 213 (343)
Q Consensus 189 ~~ki~~~~~~l~~~~gi~~PkIaV~ 213 (343)
..++.-+...++..+..+..++-|.
T Consensus 155 ~G~laY~~~~l~~l~~~~~~~~~i~ 179 (294)
T PRK13059 155 IGKLAYYLKGLEELPNFRKLKVKVE 179 (294)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 3058999999998640585699999
No 62
>PRK00654 glgA glycogen synthase; Provisional
Probab=72.65 E-value=8.1 Score=19.32 Aligned_cols=75 Identities=23% Similarity=0.201 Sum_probs=50.9
Q ss_pred CCCCCEEE--EEECCHHHHHHHHHCCCC--EEEEEEECCEEEEC----CCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 36676899--985120225555414477--27999208764755----88755222133686683899999999999998
Q gi|254780397|r 262 RQCYDVAI--CMYHDQALIPIKTLDFNQ--TVNITLGLPFVRTS----PDHGTAFDIAGSSLTQEESLVSALKIAAQLGY 333 (343)
Q Consensus 262 ~~~~D~vl--amYHDQglip~K~l~f~~--~Vn~t~GLp~irtS----pdHGTafdiagk~~a~~~s~~~ai~~a~~~~~ 333 (343)
+..-|++| ++|-=-||.++.++..+. -|.-|+||.=..+. .+.||+|-.. -.|+.+|..|++.|+++.+
T Consensus 365 ya~aD~~lmPS~~EP~Gl~qleAm~~Gt~Pvv~~tGGL~dtV~d~~~~~~~~tGf~f~---~~~~~~l~~ai~~al~~~~ 441 (476)
T PRK00654 365 YAGADFFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYDPEDGGATGFVFD---DFNAEDLLTALRRALELYR 441 (476)
T ss_pred HHHCCEEECCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEC---CCCHHHHHHHHHHHHHHHC
T ss_conf 8728878645611367768999987699858817999755145666677876348737---9999999999999998856
Q ss_pred HHHCCH
Q ss_conf 520010
Q gi|254780397|r 334 QKNLCN 339 (343)
Q Consensus 334 ~~~~~~ 339 (343)
++...+
T Consensus 442 ~~~~~~ 447 (476)
T PRK00654 442 QPDLWR 447 (476)
T ss_pred CHHHHH
T ss_conf 999999
No 63
>COG4333 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.21 E-value=3.6 Score=21.42 Aligned_cols=102 Identities=14% Similarity=0.186 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-----------------
Q ss_conf 102456788898999998531345670799963665445310000121024458886421587-----------------
Q gi|254780397|r 183 LSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNK----------------- 245 (343)
Q Consensus 183 it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~----------------- 245 (343)
+-++.|..+-.----.|.+-|.-++|..++.+||||-. |.. .+...|.-.|+.++..|+
T Consensus 12 i~~~AifS~cgkyRY~L~r~WDe~Kp~~~fi~lnPs~a--da~--~Dd~Ti~rci~fA~swgyGgvy~~NLFa~~~T~~~ 87 (167)
T COG4333 12 MIKDAIFSPCGKYRYSLSRVWDESKPYTLFIGLNPSYA--DAE--KDDRTLSRCISFAKSWGYGGVYMANLFAFVHTQRH 87 (167)
T ss_pred EEEEEEECCCHHHHHHHHHHHCCCCCEEEEEEECCCHH--HHH--HCCHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCHH
T ss_conf 24433665323445446654234587269998454234--255--14659999998876326573787510344169978
Q ss_pred ---CCCCCCCCHHHEECC-CCCCCCEEEEEE------CCHHHHHHHHHCCCCE
Q ss_conf ---643455511210002-236676899985------1202255554144772
Q gi|254780397|r 246 ---NIIGPLPADSMFHHS-ARQCYDVAICMY------HDQALIPIKTLDFNQT 288 (343)
Q Consensus 246 ---~v~GP~paDt~F~~~-~~~~~D~vlamY------HDQglip~K~l~f~~~ 288 (343)
++.-|+-.|+=-+-- .-..-|-|++-| ||.+--....|.|++.
T Consensus 88 ~L~~~~dPigkdnD~HL~~~~s~a~~vI~AwG~~gk~h~R~~~V~E~L~p~~~ 140 (167)
T COG4333 88 ELMKASDPIGKDNDSHLIRLVSGAGLVIAAWGNEGKRHLRRSTVVEQLLPEST 140 (167)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEHHHHHHHHHHHCCCCH
T ss_conf 97108898898740899998723784999605653201689999998653453
No 64
>PRK13055 putative lipid kinase; Reviewed
Probab=70.63 E-value=6.9 Score=19.73 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=7.8
Q ss_pred HHHHHHHHHHCCCCCEE
Q ss_conf 78877664301234304
Q gi|254780397|r 102 NIEKAVSLTLSGQALAI 118 (343)
Q Consensus 102 sl~~A~~l~~~g~~~al 118 (343)
....|++...+++...+
T Consensus 109 ~~~~A~~~i~~g~~~~i 125 (334)
T PRK13055 109 NPVEAAKVILKNQTIKM 125 (334)
T ss_pred CHHHHHHHHHCCCEEEE
T ss_conf 99999999862992899
No 65
>PRK11914 diacylglycerol kinase; Reviewed
Probab=70.31 E-value=5.4 Score=20.34 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=6.6
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 88776643012343
Q gi|254780397|r 103 IEKAVSLTLSGQAL 116 (343)
Q Consensus 103 l~~A~~l~~~g~~~ 116 (343)
.+.|++...+++..
T Consensus 111 ~~~a~~~i~~g~~~ 124 (304)
T PRK11914 111 PEAAADVIVDGWTE 124 (304)
T ss_pred HHHHHHHHHCCCEE
T ss_conf 99999887449668
No 66
>TIGR01429 AMP_deaminase AMP deaminase; InterPro: IPR006329 These sequences describe AMP deaminase, a large, well-conserved eukaryotic protein involved in energy metabolism. Most members of the family have an additional, poorly alignable region of 150 amino acids or more N-terminal to the conserved domain which defines this group of sequences.; GO: 0003876 AMP deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process.
Probab=70.15 E-value=3.6 Score=21.43 Aligned_cols=79 Identities=20% Similarity=0.459 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHH------------------HHHHHHHHC-CCC-C
Q ss_conf 67888989999985313456707999636654453100001210244------------------588864215-876-4
Q gi|254780397|r 188 IIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIII------------------PAITYLRND-NKN-I 247 (343)
Q Consensus 188 I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~------------------PaI~~~~~~-g~~-v 247 (343)
+-.-|..+++ +|+.-| .-+..|=|||||-|.+ +.+. |..|.|=-. .|- +
T Consensus 425 mYaN~~~LN~-fR~~rG-----Lntf~LRPHcGEAG~v-----~HL~sAFl~a~~I~HGilLrK~PvLQYLYYL~QIgIA 493 (616)
T TIGR01429 425 MYANITALNA-FRRERG-----LNTFVLRPHCGEAGEV-----DHLVSAFLLAHGINHGILLRKVPVLQYLYYLTQIGIA 493 (616)
T ss_pred HHHHHHHHHH-HHHHHC-----CCEEECCCCCCCCCCH-----HHHHHHHHHHCCHHHCHHHCCCCHHHHHHHHHCCCCC
T ss_conf 9999999988-877605-----6142017877887756-----7999999986012213000155245787876203300
Q ss_pred CCCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEE
Q ss_conf 3455511210002236676899985120225555414477279992
Q gi|254780397|r 248 IGPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITL 293 (343)
Q Consensus 248 ~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~ 293 (343)
--|+|=-++|..=.|+ ||.. +|.+|-||.|
T Consensus 494 MSPLSNNSLFL~Y~kn---------------Pl~~-yl~kGLnVSL 523 (616)
T TIGR01429 494 MSPLSNNSLFLEYDKN---------------PLPE-YLKKGLNVSL 523 (616)
T ss_pred CCCHHHHHHHHHCCCC---------------CHHH-HHHCCCCEEE
T ss_conf 1600234675513668---------------2488-9851482331
No 67
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=66.22 E-value=11 Score=18.49 Aligned_cols=76 Identities=18% Similarity=0.213 Sum_probs=54.6
Q ss_pred CCCCCCEEE--EEECCHHHHHHHHHCCCCEEEE--EEECCEEEECCC----CCCCHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 236676899--9851202255554144772799--920876475588----75522213368668389999999999999
Q gi|254780397|r 261 ARQCYDVAI--CMYHDQALIPIKTLDFNQTVNI--TLGLPFVRTSPD----HGTAFDIAGSSLTQEESLVSALKIAAQLG 332 (343)
Q Consensus 261 ~~~~~D~vl--amYHDQglip~K~l~f~~~Vn~--t~GLp~irtSpd----HGTafdiagk~~a~~~s~~~ai~~a~~~~ 332 (343)
.+..-|++| ++|-=.||.++.++..+.-+=+ |+||+=..+.-+ .||+|=... .|+.+|..|+.-|+++.
T Consensus 367 lya~aD~~l~PS~~EP~Gl~qleAm~~GtppIa~~tGGL~dtV~d~~~~~~~~tGf~f~~---~~~~~l~~ai~~al~~~ 443 (476)
T cd03791 367 IYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEG---YNADALLAALRRALALY 443 (476)
T ss_pred HHHHCCEEECCCCCCCCCHHHHHHHHCCCCEEECCCCCCCCEEECCCCCCCCCCEEEECC---CCHHHHHHHHHHHHHHH
T ss_conf 998499974255457854899999866997598069998651003666777774588679---99999999999999985
Q ss_pred HHHHCCH
Q ss_conf 8520010
Q gi|254780397|r 333 YQKNLCN 339 (343)
Q Consensus 333 ~~~~~~~ 339 (343)
+++...+
T Consensus 444 ~~~~~~~ 450 (476)
T cd03791 444 RDPEAWR 450 (476)
T ss_pred CCHHHHH
T ss_conf 7999999
No 68
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=63.97 E-value=5.7 Score=20.21 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=30.1
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHH
Q ss_conf 45888642158764345551121000223667689998512022
Q gi|254780397|r 234 IPAITYLRNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQAL 277 (343)
Q Consensus 234 ~PaI~~~~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQgl 277 (343)
.=+++.+++.|++++| .-+..+-.. ...+||.||+|..+...
T Consensus 48 ~~a~~vl~e~Gid~~~-~~~k~i~~~-~~~~~DlIitmd~~~~~ 89 (139)
T COG0394 48 PRAVEVLAEHGIDISG-HRSKQLTEE-DFDEFDLIITMDESNAA 89 (139)
T ss_pred HHHHHHHHHCCCCCCC-CCCCCCCHH-HHHHCCEEEEECHHHHH
T ss_conf 7899999985999678-767747654-57448999996736666
No 69
>COG1467 PRI1 Eukaryotic-type DNA primase, catalytic (small) subunit [DNA replication, recombination, and repair]
Probab=59.74 E-value=14 Score=17.94 Aligned_cols=78 Identities=21% Similarity=0.350 Sum_probs=49.9
Q ss_pred CCCEEEEECCCCCHHH-----HHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE---CCCCCCC--CCCCCCCCHH
Q ss_conf 2112665304531333-----4320102456788898999998531345670799963---6654453--1000012102
Q gi|254780397|r 163 PQLRTVPVTIHIPIAD-----ICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGL---NPHAGEN--ATIGIEEKNI 232 (343)
Q Consensus 163 ~~L~V~l~TtHiPLk~-----V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gL---NPHAGE~--G~~G~EE~~i 232 (343)
..|-.=.--.|.|... |++.+-.. ..+.+++++++|+++||++..+|--.|= -=|.-+. =.+|++|-..
T Consensus 94 ~eLVFDIDad~lp~~~~~~~~v~~~c~~~-~~e~~~l~~~~L~~DfGf~di~ivFSG~RGyHv~V~d~~~~~Lgs~eRre 172 (341)
T COG1467 94 AELVFDIDADHLPERRCDKDSVCKMCLED-KKEAVRLLNDFLREDFGFKDIKIVFSGRRGYHVHVSDEEVLSLGSEERRE 172 (341)
T ss_pred HHHEEECCCCCCCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEECHHHHHCCHHHHHH
T ss_conf 45348603443765433334588999999-99999999999998649997579872897469999574664067377777
Q ss_pred HHHHHHHHH
Q ss_conf 445888642
Q gi|254780397|r 233 IIPAITYLR 241 (343)
Q Consensus 233 I~PaI~~~~ 241 (343)
|.+=+.--.
T Consensus 173 I~~Yv~~~~ 181 (341)
T COG1467 173 ILDYVSGNR 181 (341)
T ss_pred HHHHHHHCC
T ss_conf 665541114
No 70
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=56.92 E-value=5.6 Score=20.25 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=21.8
Q ss_pred HHHHHHHHHHCCCCCEEEECHHHHH--HHHHHCCCCCCH
Q ss_conf 7887766430123430443223447--776410132564
Q gi|254780397|r 102 NIEKAVSLTLSGQALAIVTNPIAKF--LLYQEKFKFPGH 138 (343)
Q Consensus 102 sl~~A~~l~~~g~~~alVT~PInK~--~l~~aG~~f~Gh 138 (343)
.++.|++...+++...+=-+=.|+. .++.+|.-|...
T Consensus 107 ~~~~Al~~i~~g~~~~vDlg~~~~~~~fin~a~~G~~a~ 145 (301)
T COG1597 107 DIEAALELIKSGETRKVDLGQVNGRRYFINNAGIGFDAE 145 (301)
T ss_pred HHHHHHHHHHCCCEEEEEHHHCCCCCEEEEEECCCCCHH
T ss_conf 499999998639869975343389546988740450238
No 71
>pfam12481 DUF3700 Aluminium induced protein. This domain family is found in eukaryotes, and is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=54.52 E-value=8.4 Score=19.20 Aligned_cols=24 Identities=42% Similarity=0.677 Sum_probs=18.1
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 00121024458886421587643455511
Q gi|254780397|r 226 GIEEKNIIIPAITYLRNDNKNIIGPLPAD 254 (343)
Q Consensus 226 G~EE~~iI~PaI~~~~~~g~~v~GP~paD 254 (343)
+.-|.-+++-|-+.||.+ ||||||
T Consensus 100 ~anE~~lVIEAYrtLRDR-----gPYPad 123 (123)
T pfam12481 100 SANEVMLVIEAYRTLRDR-----GPYPAD 123 (123)
T ss_pred CCCEEEEHHHHHHHHHCC-----CCCCCC
T ss_conf 652465416356665216-----999998
No 72
>TIGR01046 S10_Arc_S20_Euk ribosomal protein S10; InterPro: IPR005729 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This model describes the archaeal ribosomal protein and its equivalents in eukaryotes.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=54.38 E-value=8.2 Score=19.26 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=28.5
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 670799963665445310000121024458886421587643455511
Q gi|254780397|r 207 NPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNIIGPLPAD 254 (343)
Q Consensus 207 ~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~GP~paD 254 (343)
+-||.+.|.|+-. =.++..-..+.|++.|+++.||+|==
T Consensus 2 k~RI~L~s~n~~~---------L~~vc~qi~~iA~~tgv~~~GPvpLP 40 (99)
T TIGR01046 2 KARIKLTSTNVRS---------LEEVCEQIKEIAEKTGVRMSGPVPLP 40 (99)
T ss_pred CEEEEECCCCHHH---------HHHHHHHHHHHHHHCCCEEECCCCCC
T ss_conf 3568861589578---------89999999887774595555880698
No 73
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=53.62 E-value=11 Score=18.49 Aligned_cols=38 Identities=32% Similarity=0.650 Sum_probs=26.5
Q ss_pred HHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHEE
Q ss_conf 9985313456707999636654453100001210244588864215876434555112100
Q gi|254780397|r 198 AMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNIIGPLPADSMFH 258 (343)
Q Consensus 198 ~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~GP~paDt~F~ 258 (343)
.|++.+|+.+ +.-|.-+++-|-+.||.+ ||||||-+..
T Consensus 86 ~L~qqYGLsK------------------~aNE~~~vIEAYrtLRDR-----gPYPadqVv~ 123 (224)
T cd01910 86 SLKQQYGLSK------------------TANEAMLVIEAYRTLRDR-----GPYPADQVVK 123 (224)
T ss_pred HHHHHHCCCC------------------CCCEEEEHHHHHHHHHCC-----CCCCHHHHHH
T ss_conf 8999867366------------------654364628778764147-----9998899997
No 74
>pfam07799 DUF1643 Protein of unknown function (DUF1643). The members of this family are all sequences found within hypothetical proteins expressed by various bacterial species. The region concerned is approximately 150 residues long.
Probab=53.27 E-value=12 Score=18.34 Aligned_cols=82 Identities=15% Similarity=0.239 Sum_probs=42.3
Q ss_pred HHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC------CC---CCCC-----------CHH-HE
Q ss_conf 985313456707999636654453100001210244588864215876------43---4555-----------112-10
Q gi|254780397|r 199 MKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKN------II---GPLP-----------ADS-MF 257 (343)
Q Consensus 199 l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~------v~---GP~p-----------aDt-~F 257 (343)
|.+.++-..|.+.+.||||.-.+ ..+..-.|.-.+..++.-|+. ++ .+.| .|. .+
T Consensus 4 L~R~W~~~~~~~~fIglNPStAd----~~~~DpTi~r~~~fa~~~Gygg~~~~NLfa~rst~P~~L~~~~dpig~~Nd~~ 79 (135)
T pfam07799 4 LTRTWDESGPTLLFIGLNPSTAD----AEVDDPTVRRCIRFARAWGYGGLVVVNLFAWRATDPKDLRRAADPVGPENDAH 79 (135)
T ss_pred EEEEECCCCCEEEEEEECCCCCC----CCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHCCCCCCHHHHHH
T ss_conf 99897799985999984488788----65568489999999987799849998513121699899975648878769999
Q ss_pred ECCCCCCCCEEEEE------ECCHHHHHHHHHC
Q ss_conf 00223667689998------5120225555414
Q gi|254780397|r 258 HHSARQCYDVAICM------YHDQALIPIKTLD 284 (343)
Q Consensus 258 ~~~~~~~~D~vlam------YHDQglip~K~l~ 284 (343)
.....++.|.|++. +++++...++.|.
T Consensus 80 i~~~~~~a~~vv~aWG~~g~~~~r~~~v~~~l~ 112 (135)
T pfam07799 80 LLRAAKWADDVVLAWGNHGALLDRGQEVLELLR 112 (135)
T ss_pred HHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 999987139299971477762006799999999
No 75
>KOG2430 consensus
Probab=52.87 E-value=2.3 Score=22.62 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=9.1
Q ss_pred CCCCCCCCCCCEEEEECCCCCH
Q ss_conf 5211233221126653045313
Q gi|254780397|r 155 KPVMMLSGPQLRTVPVTIHIPI 176 (343)
Q Consensus 155 ~~~Mll~~~~L~V~l~TtHiPL 176 (343)
+.+|-.+++.--..-+-.|-|.
T Consensus 278 dai~ryi~k~pi~ldvhihkp~ 299 (587)
T KOG2430 278 DAIKRYINKGPIFLDVHIHKPM 299 (587)
T ss_pred HHHHHHHCCCCEEEEEECCCCH
T ss_conf 9999872389848997415413
No 76
>PRK11574 hypothetical protein; Provisional
Probab=52.46 E-value=9.9 Score=18.79 Aligned_cols=30 Identities=17% Similarity=0.265 Sum_probs=16.6
Q ss_pred CCCCCEEEECH---HHHHHHHHHCCC---CCCHHHHH
Q ss_conf 12343044322---344777641013---25647899
Q gi|254780397|r 112 SGQALAIVTNP---IAKFLLYQEKFK---FPGHTEFL 142 (343)
Q Consensus 112 ~g~~~alVT~P---InK~~l~~aG~~---f~GhTE~L 142 (343)
.+-+.|||-+| +.+.-+- .|.+ |||..+.|
T Consensus 99 gK~iAAICAaP~~vL~~~gll-~~~~~T~yP~~~~~l 134 (196)
T PRK11574 99 GRIVAAICAAPATVLVPHDIF-PIGNMTGFPTLKDKI 134 (196)
T ss_pred CCEEEEECHHHHHHHHHCCCC-CCCCEEECCCHHHHC
T ss_conf 991999824069999878865-798468892567656
No 77
>KOG2899 consensus
Probab=50.91 E-value=9.3 Score=18.95 Aligned_cols=47 Identities=11% Similarity=0.101 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 024677887766430123430443223447776410132564789999834
Q gi|254780397|r 97 SSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAK 147 (343)
Q Consensus 97 ~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~ 147 (343)
.+++++=+.- .....++|.+...-|.| +++. ...-.|--+||++.+.
T Consensus 151 n~vle~~dfl--~~~~~~fDiIlcLSiTk-WIHL-NwgD~GL~~ff~kis~ 197 (288)
T KOG2899 151 NYVLESDDFL--DMIQPEFDIILCLSITK-WIHL-NWGDDGLRRFFRKISS 197 (288)
T ss_pred CEEEECCHHH--HHCCCCCCEEEEEEEEE-EEEC-CCCCHHHHHHHHHHHH
T ss_conf 3798600455--50565422799977334-6764-5645789999999998
No 78
>PRK13054 lipid kinase; Reviewed
Probab=49.03 E-value=21 Score=16.80 Aligned_cols=17 Identities=18% Similarity=0.221 Sum_probs=9.5
Q ss_pred CCCCCCEEEECCCCCCCC
Q ss_conf 988883899718987747
Q gi|254780397|r 1 MDEFLPLILTQGDPAGIG 18 (343)
Q Consensus 1 M~k~~pI~IT~GDPaGIG 18 (343)
|+..|.+.|.-|- +|.+
T Consensus 1 ~~~~k~lli~N~~-~~g~ 17 (299)
T PRK13054 1 MEFPKSLLILNGK-SAGN 17 (299)
T ss_pred CCCCEEEEEECCC-CCCH
T ss_conf 9985699998170-0050
No 79
>pfam01902 ATP_bind_4 ATP-binding region. This family of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.In some members of this family, this domain is associated with pfam01042.
Probab=48.42 E-value=22 Score=16.66 Aligned_cols=17 Identities=24% Similarity=0.096 Sum_probs=11.7
Q ss_pred HHHHCCCCCEEEECHHH
Q ss_conf 64301234304432234
Q gi|254780397|r 108 SLTLSGQALAIVTNPIA 124 (343)
Q Consensus 108 ~l~~~g~~~alVT~PIn 124 (343)
++.++-.++++|||-|.
T Consensus 79 ~~l~~~~i~~vv~GdI~ 95 (219)
T pfam01902 79 GFLESLDVDALVAGAIY 95 (219)
T ss_pred HHHHHCCCCEEEECCCC
T ss_conf 99987598699998603
No 80
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=46.25 E-value=24 Score=16.45 Aligned_cols=124 Identities=13% Similarity=0.159 Sum_probs=72.9
Q ss_pred EECCCCCCCCHHHHHHHHCCCCH---------------HCCCCEEEE-CC----HHHHHHHHHHCCCCCCEEECCCCHHC
Q ss_conf 97189877478999998428523---------------248989999-39----99999999981899744753861011
Q gi|254780397|r 9 LTQGDPAGIGPDISLKAWASRQI---------------TAIPPFIYI-GD----VDVLNARAKQLNLSVPLYETDCKNAV 68 (343)
Q Consensus 9 IT~GDPaGIGpEIilKal~~~~~---------------~~~~~~vii-gd----~~~l~~~~k~l~~~~~i~~i~~~~~~ 68 (343)
+.+|=-.=||.-++-+.+.+..+ ....+|.++ || .++++++.+.++.=+|+-.|..+ .
T Consensus 319 lilgvngfig~hl~~~~l~~~~~~v~g~d~~~~~i~~~~~~p~~~f~~gdi~~~~~wie~~ikkcdvvlplvaiatp--~ 396 (660)
T PRK08125 319 LILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFLGHPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATP--I 396 (660)
T ss_pred EEEECCCHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCEEEEEHHHCCH--H
T ss_conf 99834413678999998503885899886575345575349954888156146689999887545767320553474--7
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHCCCC----CEEEECHHHHHHHHHHCCC
Q ss_conf 126785376103332200135531-00000246778877664301234----3044322344777641013
Q gi|254780397|r 69 SIFKKALPIISSPCGAKIVTGTPN-PQTASSTIANIEKAVSLTLSGQA----LAIVTNPIAKFLLYQEKFK 134 (343)
Q Consensus 69 ~~~~~~i~i~~~~~~~~~~~G~~s-~~~g~~~~~sl~~A~~l~~~g~~----~alVT~PInK~~l~~aG~~ 134 (343)
.+-++-+-++..++..+.+.=... +-+-+.++-|-....-.|.+..+ +.||+|||||.-|.-+-.+
T Consensus 397 ~y~~~pl~vfeldfe~nl~ivr~c~ky~kriifpstsevygm~~d~~f~ed~s~li~gpi~~~RWiYs~sK 467 (660)
T PRK08125 397 EYTRNPLRVFELDFEENLKIIRYCVKYRKRIIFPSTSEVYGMCTDKYFDEDHSNLIVGPINKQRWIYSVSK 467 (660)
T ss_pred HHHCCCCEEEEECHHHCCHHHHHHHHHCCEEEECCHHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHH
T ss_conf 76348604787326755289999997487789656055101478867685556615677555435787789
No 81
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase; InterPro: IPR001160 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This majority of this group of proteins are aminoacyl-histidine dipeptidases (3.4.13.3 from EC, Xaa-His dipeptidases), which are zinc-containing metallopeptidases that belong to MEROPS peptidase family M20 (clan MH), subfamily M20C . Proteins of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His , . The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide.. The X-His dipeptidases cleave Xaa-His dipeptides (where Xaa is any hydrophobic residue). The amino acid sequence deduced from Escherichia coli reveals that peptidase D is a slightly hydrophilic protein of 485 residues that contains no extended domains of marked hydrophobicity . Also contained within this family of proteins are acetylornithine deactylases which belong to MEROPS peptidase family M20, subfamily M20A non-peptidase homologues. ; GO: 0008769 X-His dipeptidase activity, 0006508 proteolysis.
Probab=46.23 E-value=22 Score=16.75 Aligned_cols=28 Identities=32% Similarity=0.631 Sum_probs=17.0
Q ss_pred HHHHHHHHHCCCCCCEEEEEEECCCCC-CCCCCC
Q ss_conf 899999853134567079996366544-531000
Q gi|254780397|r 194 TVYNAMKKYFGINNPRIAISGLNPHAG-ENATIG 226 (343)
Q Consensus 194 ~~~~~l~~~~gi~~PkIaV~gLNPHAG-E~G~~G 226 (343)
.+.+.|+..|| ++|.|-|- ||| |-|.|+
T Consensus 432 ~~~kvY~e~~g-e~~~v~vi----HAGLECG~i~ 460 (506)
T TIGR01893 432 VARKVYKEMFG-EDPEVKVI----HAGLECGIIS 460 (506)
T ss_pred HHHHHHHHHHC-CCCEEEEE----ECCHHHCCCH
T ss_conf 99998755407-89579999----6641104000
No 82
>PRK13057 putative lipid kinase; Reviewed
Probab=46.20 E-value=21 Score=16.87 Aligned_cols=20 Identities=10% Similarity=-0.062 Sum_probs=7.4
Q ss_pred HHHHHHHHHHCCCCCCEEEE
Q ss_conf 98999998531345670799
Q gi|254780397|r 193 DTVYNAMKKYFGINNPRIAI 212 (343)
Q Consensus 193 ~~~~~~l~~~~gi~~PkIaV 212 (343)
..+...++..+..+..++-+
T Consensus 151 ~Y~~~~~~~l~~~~~~~~~i 170 (287)
T PRK13057 151 GYAIAALRVLRRSRPFTAEI 170 (287)
T ss_pred HHHHHHHHHHHHCCCEEEEE
T ss_conf 99999999996369739999
No 83
>TIGR02628 fuculo_kin_coli L-fuculokinase; InterPro: IPR013450 Proteins in this entry are L-fuculokinases from the clade that includes the Escherichia coli enzyme P11553 from SWISSPROT. They catalyze the second step in fucose catabolism and belong to the FGGY family of carbohydrate kinases. These enzymes are encoded by the kinase (K) gene of the fucose (fuc) operon.; GO: 0008737 L-fuculokinase activity, 0005975 carbohydrate metabolic process.
Probab=44.87 E-value=7.4 Score=19.55 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=36.0
Q ss_pred EEECC--EEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 92087--64755887552221336866838999999999999985200
Q gi|254780397|r 292 TLGLP--FVRTSPDHGTAFDIAGSSLTQEESLVSALKIAAQLGYQKNL 337 (343)
Q Consensus 292 t~GLp--~irtSpdHGTafdiagk~~a~~~s~~~ai~~a~~~~~~~~~ 337 (343)
-+||| +|..|..|-|=|.+.|.|-+..++++.+=-+=+-|+|..+-
T Consensus 229 ~lGL~~~vPVISaGHDTQFAlfGsGA~~N~pvLSSGTWEILMaRsq~~ 276 (473)
T TIGR02628 229 LLGLNADVPVISAGHDTQFALFGSGAEENQPVLSSGTWEILMARSQRA 276 (473)
T ss_pred HCCCCCCCCEEECCCCHHHHHHHCCHHHCCCEECCCHHHHHHHHCCCC
T ss_conf 628898985784785411463104532178520242377774211674
No 84
>pfam06516 NUP Purine nucleoside permease (NUP). This family consists of several purine nucleoside permease from both bacteria and fungi.
Probab=43.94 E-value=26 Score=16.23 Aligned_cols=16 Identities=25% Similarity=0.034 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHCCCCC
Q ss_conf 7788776643012343
Q gi|254780397|r 101 ANIEKAVSLTLSGQAL 116 (343)
Q Consensus 101 ~sl~~A~~l~~~g~~~ 116 (343)
.+-+.+++..+.-++|
T Consensus 99 awA~y~Vd~dL~~eiD 114 (315)
T pfam06516 99 AWARYAVDVDLQYEID 114 (315)
T ss_pred HHHHHHHHCCCCCCCC
T ss_conf 1424631002013125
No 85
>KOG3438 consensus
Probab=43.87 E-value=22 Score=16.73 Aligned_cols=47 Identities=23% Similarity=0.312 Sum_probs=27.2
Q ss_pred HHHHHHHHCCCCCCEEEEEEEC-CCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999985313456707999636-65445310000121024458886421
Q gi|254780397|r 195 VYNAMKKYFGINNPRIAISGLN-PHAGENATIGIEEKNIIIPAITYLRN 242 (343)
Q Consensus 195 ~~~~l~~~~gi~~PkIaV~gLN-PHAGE~G~~G~EE~~iI~PaI~~~~~ 242 (343)
+-++||--.+ ++|++-+||.+ ||-.|+-.--+=-..-=.||++-+++
T Consensus 29 lgNalR~vI~-k~peVefcGYtIPHPse~k~niRIQt~~~~~A~evl~k 76 (105)
T KOG3438 29 LGNALRYVIM-KNPEVEFCGYTIPHPSEDKINIRIQTRDGDPAVEVLKK 76 (105)
T ss_pred HHHHHHHHHH-CCCCEEEEECCCCCCCHHHHEEEEEECCCCCCHHHHHH
T ss_conf 2288999981-49844787515899755560378880589860689999
No 86
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=43.65 E-value=27 Score=16.21 Aligned_cols=32 Identities=16% Similarity=0.128 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHCCCCC-CCCCCCHHHEECCCC
Q ss_conf 02445888642158764-345551121000223
Q gi|254780397|r 231 NIIIPAITYLRNDNKNI-IGPLPADSMFHHSAR 262 (343)
Q Consensus 231 ~iI~PaI~~~~~~g~~v-~GP~paDt~F~~~~~ 262 (343)
..|.=.|..+|++=-.. .++-.=.|+.+..++
T Consensus 199 rsid~~I~rLRkKl~~~~~~~~~I~TvrG~GYr 231 (240)
T PRK10710 199 RTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 (240)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEE
T ss_conf 659999999999601069999819998985562
No 87
>KOG2524 consensus
Probab=42.36 E-value=26 Score=16.29 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=16.5
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCH
Q ss_conf 8999983423588665211233221126653045313
Q gi|254780397|r 140 EFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPI 176 (343)
Q Consensus 140 E~La~~~~~~~~~~~~~~Mll~~~~L~V~l~TtHiPL 176 (343)
+.++..+.++++. .+ .|.-++++....+..+-+
T Consensus 124 ~~i~~iF~Sd~ge---~I-PLL~~Ri~~~~~sGkVLv 156 (338)
T KOG2524 124 TLIASIFDSDTGE---KI-PLLEERIRIMRASGKVLV 156 (338)
T ss_pred HHHHHHHCCCCCC---CC-CCHHHHHHHHHHCCCEEE
T ss_conf 9999887157776---25-208999999874372765
No 88
>TIGR02294 nickel_nikA nickel ABC transporter, periplasmic nickel-binding protein; InterPro: IPR011980 Members of this family are periplasmic nickel-binding proteins of nickel ABC transporters. Nickel is bound specifically, albeit weakly, through water molecules positioned in the binding site. The amino acids whose side chains line the binding site include Tyr-44, Met-49, Trp-122, Arg-159, Trp-420, and Tyr-424 (numbering based on the precursor sequence of Escherichia coli NikA) with the Arg contributing a hydrogen bond indirectly through a water molecule ..
Probab=42.31 E-value=22 Score=16.67 Aligned_cols=75 Identities=20% Similarity=0.221 Sum_probs=59.0
Q ss_pred HHHHHCCCCCC-CCCCCHHHEECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCE--------EEECCCCCCCH
Q ss_conf 86421587643-4555112100022366768999851202255554144772799920876--------47558875522
Q gi|254780397|r 238 TYLRNDNKNII-GPLPADSMFHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLPF--------VRTSPDHGTAF 308 (343)
Q Consensus 238 ~~~~~~g~~v~-GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp~--------irtSpdHGTaf 308 (343)
-++++.||+|+ --.--|+.+.+...++||.++ +.|-|+|+ +|.--|||=|.
T Consensus 373 aE~~kIGi~~~l~g~E~~~~~~R~r~GdFdm~F--------------------~~tWGAPYDPHsf~s~~~~~~dhGh~~ 432 (513)
T TIGR02294 373 AEWRKIGIKVDLIGEEEDKIVARRRDGDFDMIF--------------------AYTWGAPYDPHSFISAMRAKGDHGHGD 432 (513)
T ss_pred HHHHHCCCCEEEEECCHHHHHHHHHCCCCCEEH--------------------HCCCCCCCCHHHHHHHHHCCCCCCCHH
T ss_conf 989860951346533558999984078843013--------------------204889775189999973045677458
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 213368668389999999999999
Q gi|254780397|r 309 DIAGSSLTQEESLVSALKIAAQLG 332 (343)
Q Consensus 309 diagk~~a~~~s~~~ai~~a~~~~ 332 (343)
..|-.|.|+=.-|-+.|+-|+...
T Consensus 433 ~~A~~gLa~K~~~D~~I~~~L~~~ 456 (513)
T TIGR02294 433 EEAQSGLATKDELDKEIGEALAST 456 (513)
T ss_pred HHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf 898411302068899999984278
No 89
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=37.99 E-value=17 Score=17.34 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=16.5
Q ss_pred CCCCCEEEECHHHHHHHHHH----CCCCCCHHHHHHHH
Q ss_conf 12343044322344777641----01325647899998
Q gi|254780397|r 112 SGQALAIVTNPIAKFLLYQE----KFKFPGHTEFLAEL 145 (343)
Q Consensus 112 ~g~~~alVT~PInK~~l~~a----G~~f~GhTE~La~~ 145 (343)
.+-+.++|++|.- +..+ |.++++|..+-.++
T Consensus 94 ~k~iaaIC~gp~~---L~~~gll~g~k~T~~~~~~~~l 128 (165)
T cd03134 94 GKPVAAICHGPWV---LISAGVVRGRKLTSYPSIKDDL 128 (165)
T ss_pred CCCEEEECCHHHH---HHHCCCCCCCEEEECCCHHHHH
T ss_conf 9929999875787---7457825898898677489999
No 90
>TIGR01008 rpsC_E_A ribosomal protein S3; InterPro: IPR005703 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . Ribosomal protein S3 is one of the proteins from the small ribosomal subunit. This family describes ribosomal protein S3 of the eukaryotic cytosol and of the archaea.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=37.23 E-value=31 Score=15.83 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCHH-HHHHHCCHHHHHHHHHHHHHHHHH--HCCCCCC
Q ss_conf 0132564789999834235886652112332211266530453133-343201024567888989999985--3134567
Q gi|254780397|r 132 KFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIA-DICRILSTKRIIETSDTVYNAMKK--YFGINNP 208 (343)
Q Consensus 132 G~~f~GhTE~La~~~~~~~~~~~~~~Mll~~~~L~V~l~TtHiPLk-~V~~~it~~~I~~ki~~~~~~l~~--~~gi~~P 208 (343)
|.+..=--|||.+-...-. ..-| +.++.|+=|.|=+. +=|..+==. =-+.|+-+-+.|++ .||+.+|
T Consensus 9 ~l~~~~idE~l~~El~~AG----Ysgv-----dv~~TPlGT~vii~AerPg~VIGr-~G~rIr~LT~~l~~Rf~Fg~enP 78 (204)
T TIGR01008 9 GLKRLLIDEFLKKELREAG----YSGV-----DVRKTPLGTKVIIYAERPGLVIGR-GGRRIRELTEKLQKRFKFGLENP 78 (204)
T ss_pred HHHHHHHHHHHHHHHHHCC----CCCC-----EEEECCCCCEEEEEEECCCCEECC-CCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 7888778889999886517----7755-----168777896799998368637727-97218899999987520589996
Q ss_pred EEEEEE
Q ss_conf 079996
Q gi|254780397|r 209 RIAISG 214 (343)
Q Consensus 209 kIaV~g 214 (343)
+|-|--
T Consensus 79 qi~V~~ 84 (204)
T TIGR01008 79 QIDVEE 84 (204)
T ss_pred EEEEEC
T ss_conf 587641
No 91
>KOG1116 consensus
Probab=36.49 E-value=27 Score=16.13 Aligned_cols=70 Identities=20% Similarity=0.266 Sum_probs=41.0
Q ss_pred CCCCC-EEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHC--CCCCCCCCCCHHHEECCCCCCCCEEEEEECCH
Q ss_conf 34567-07999636654453100001210244588864215--87643455511210002236676899985120
Q gi|254780397|r 204 GINNP-RIAISGLNPHAGENATIGIEEKNIIIPAITYLRND--NKNIIGPLPADSMFHHSARQCYDVAICMYHDQ 275 (343)
Q Consensus 204 gi~~P-kIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~--g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQ 275 (343)
..+.| |+-|. +|||.|-+--. ..=.+...|-..++.-. =....+|-=|-.+-......+||+|+|+=-|-
T Consensus 175 ~~~r~~~lLV~-iNP~gGkGka~-~~F~~~v~Pll~~A~i~~evv~T~~~~HArei~rt~dl~kyDgIv~vsGDG 247 (579)
T KOG1116 175 SLKRPRRLLVF-INPFGGKGKAK-KLFKNHVEPLLSEAGISFEVVLTTRPNHAREIVRTLDLGKYDGIVCVSGDG 247 (579)
T ss_pred CCCCCCCEEEE-ECCCCCCCCHH-HHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 46888518999-88899885078-999863100231057528999815854799998764204555389962786
No 92
>KOG3107 consensus
Probab=36.38 E-value=35 Score=15.52 Aligned_cols=27 Identities=11% Similarity=-0.002 Sum_probs=14.3
Q ss_pred HHHHHHHCCCCCEEEECHHHHHHHHHHCC
Q ss_conf 77664301234304432234477764101
Q gi|254780397|r 105 KAVSLTLSGQALAIVTNPIAKFLLYQEKF 133 (343)
Q Consensus 105 ~A~~l~~~g~~~alVT~PInK~~l~~aG~ 133 (343)
.+.+..++ .-+..|+|--+++|...--
T Consensus 319 e~~~~y~n--nv~~l~~p~~~eaw~~lr~ 345 (468)
T KOG3107 319 EIYNTYKN--NVGGLTGPNKREAWLQLRA 345 (468)
T ss_pred HHHHHHHH--HHHCCCCCHHHHHHHHHHH
T ss_conf 99999976--5310047206677999998
No 93
>pfam06962 rRNA_methylase Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.
Probab=35.41 E-value=23 Score=16.56 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=28.0
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 7079996366544531000012102445888642158764
Q gi|254780397|r 208 PRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNI 247 (343)
Q Consensus 208 PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v 247 (343)
=.|.|+...=|.| |.||.+-+.-..+.+-.+.+.|
T Consensus 86 G~i~i~~Y~GH~g-----G~eE~~aV~~~~~~L~~~~~~V 120 (140)
T pfam06962 86 GLIILVIYHGHEE-----GKKEKDAVLDFVSNLDQKKWNV 120 (140)
T ss_pred CEEEEEEECCCCC-----CHHHHHHHHHHHHHCCHHHEEE
T ss_conf 8999999799998-----7999999999998489605799
No 94
>PRK07579 hypothetical protein; Provisional
Probab=35.16 E-value=36 Score=15.41 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=13.1
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHE
Q ss_conf 4458886421587643455511210
Q gi|254780397|r 233 IIPAITYLRNDNKNIIGPLPADSMF 257 (343)
Q Consensus 233 I~PaI~~~~~~g~~v~GP~paDt~F 257 (343)
-.-.|..+|+. .++|++.-=+.
T Consensus 203 ~reliN~LRA~---Tf~~~~nAYfi 224 (245)
T PRK07579 203 MREAINRLRAL---THPPYKNSYFI 224 (245)
T ss_pred HHHHHHHHHHH---CCCCCCCEEEE
T ss_conf 99999999874---26888872678
No 95
>KOG4402 consensus
Probab=34.14 E-value=37 Score=15.34 Aligned_cols=74 Identities=14% Similarity=0.108 Sum_probs=40.0
Q ss_pred ECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 32234477764101325647899998342358866521123322112665304531333432010245678889899999
Q gi|254780397|r 120 TNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAM 199 (343)
Q Consensus 120 T~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Mll~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l 199 (343)
|.|=+-.-|-. +|||.-||++......... +.+-...+.-..+---.--.+++.+.|.++|+.++++.
T Consensus 47 t~r~sp~~wPe---k~pg~~Ef~~s~~~p~~~~---------sp~~~~~~~~dD~v~vnel~~lp~~dl~~kIr~iqn~v 114 (144)
T KOG4402 47 TMRESPEPWPE---KCPGFEEFFQSESVPKGYE---------SPYKNISFLKDDAVTVNELSHLPADDLAKKIRNIQNSV 114 (144)
T ss_pred HCCCCCCCCHH---HCCCHHHHHHHCCCCCCCC---------CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 06688865402---1728999986326877667---------86412244343589998872399899999999888999
Q ss_pred HHHCCCC
Q ss_conf 8531345
Q gi|254780397|r 200 KKYFGIN 206 (343)
Q Consensus 200 ~~~~gi~ 206 (343)
.+ +|+.
T Consensus 115 Yq-LGl~ 120 (144)
T KOG4402 115 YQ-LGLE 120 (144)
T ss_pred HH-HHHH
T ss_conf 99-8169
No 96
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=33.72 E-value=25 Score=16.40 Aligned_cols=27 Identities=15% Similarity=0.130 Sum_probs=14.6
Q ss_pred CCCCCEEEECHHHHHHHHHH----CCCCCCHHHH
Q ss_conf 12343044322344777641----0132564789
Q gi|254780397|r 112 SGQALAIVTNPIAKFLLYQE----KFKFPGHTEF 141 (343)
Q Consensus 112 ~g~~~alVT~PInK~~l~~a----G~~f~GhTE~ 141 (343)
.+-+.++|.+|. .+..+ |.+.+||...
T Consensus 108 gK~iaaIChgp~---~L~~agll~Gk~~T~~~~~ 138 (180)
T cd03169 108 NKPVAAICHGPQ---ILAAAGVLKGRRCTAYPAC 138 (180)
T ss_pred CCEEEEECCHHH---HHHHCCCCCCCEEEECCCH
T ss_conf 996997781689---9987696589878826856
No 97
>pfam10044 Ret_tiss Retinal tissue protein. Rtp is a family of proteins of approximately 112 amino acids in length which is conserved from nematodes to humans. The proposed tertiary structure is of almost entirely alpha helix interrupted only by loops located at proline residues. Three sites in the protein sequence reveal two types of possible post-translation modification. A serine residue, at position 41, is a candidate for protein kinase C phosphorylation. Glycine residues at position 69 and 91 are probable sites for acetylation by covalent amide linkage of myristate via N-myristoyl transferase. Rtp is differentially expressed in the trout retina between parr and smolt developmental stages (smoltification). It is likely to be a house-keeping protein.
Probab=32.53 E-value=39 Score=15.21 Aligned_cols=63 Identities=19% Similarity=0.260 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 3256478999983423588665211233221126653045313334320102456788898999998531345
Q gi|254780397|r 134 KFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGIN 206 (343)
Q Consensus 134 ~f~GhTE~La~~~~~~~~~~~~~~Mll~~~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~ 206 (343)
.|||.+||++-.... +-..+.+-.-.+-..-+-.-.=-..+|.+.++++|+-+++.-.+ +|+.
T Consensus 18 ~~PG~~eF~~~~~~p---------~~~~~~~w~~~l~~~D~~~i~el~sLt~~~L~ekvk~L~d~aYQ-LGle 80 (95)
T pfam10044 18 QIPGVDEFLSMNDNP---------MYTSPPKWTSGLTKDDMDKINELGSLTTSGLIAKVKKLHDLAYQ-LGLE 80 (95)
T ss_pred CCCCHHHHHCCCCCC---------CCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-HHHH
T ss_conf 788988986355686---------67898742234899999999999868999999999999999999-7169
No 98
>PRK12735 elongation factor Tu; Reviewed
Probab=31.91 E-value=41 Score=15.08 Aligned_cols=137 Identities=19% Similarity=0.342 Sum_probs=60.9
Q ss_pred CCCCCHHHHHHHH-HCCCCCCCCCCCCCCCCCCCEEEEECC-CCCHHHHH------HHCC------HHHHHHHHH-HHHH
Q ss_conf 1325647899998-342358866521123322112665304-53133343------2010------245678889-8999
Q gi|254780397|r 133 FKFPGHTEFLAEL-AKKNTGITFKPVMMLSGPQLRTVPVTI-HIPIADIC------RILS------TKRIIETSD-TVYN 197 (343)
Q Consensus 133 ~~f~GhTE~La~~-~~~~~~~~~~~~Mll~~~~L~V~l~Tt-HiPLk~V~------~~it------~~~I~~ki~-~~~~ 197 (343)
.+-|||-.|+... ++.. ..+.+|+++.-+=-+.+-|. |+-|...- =.|| .+.+.+.++ .+.+
T Consensus 80 iD~PGHe~fiknMI~Ga~---~aD~alLVV~A~~G~~~QTrEHl~l~~~lgv~~~iV~vnK~D~v~~~~~~e~v~~~i~~ 156 (396)
T PRK12735 80 VDCPGHADYVKNMITGAA---QMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRE 156 (396)
T ss_pred EECCCHHHHHHHHHHCCC---CCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 836866887766641004---25679999986878753169999999983998589999875888819999999999999
Q ss_pred HHHHHCCC---CCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCCCC--CCHHHEECCCCCCCCEEEEE
Q ss_conf 99853134---5670799963665445310000121024458886421-587643455--51121000223667689998
Q gi|254780397|r 198 AMKKYFGI---NNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRN-DNKNIIGPL--PADSMFHHSARQCYDVAICM 271 (343)
Q Consensus 198 ~l~~~~gi---~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~-~g~~v~GP~--paDt~F~~~~~~~~D~vlam 271 (343)
.|++ .|+ .-|-+.+.++..-.++....+.+....+..+++.+.. ..-+.++|| |-|-+|.-...+ .|++-
T Consensus 157 ~l~~-~~f~~~~~piv~~S~~~~~~~~~~~~~~~~i~~Ll~~l~~~~~~p~r~~~~pfrl~Id~vf~v~G~G---tVVtG 232 (396)
T PRK12735 157 LLSK-YDFPGDDTPIIRGSALKALEGDAEWIGEAKILELMEALDSYIPTPERAIDKPFLMPIEDVFSISGRG---TVVTG 232 (396)
T ss_pred HHHH-CCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCC---EEEEE
T ss_conf 9985-5999664779996733722588743444779999999885267877777886599976477767971---59998
Q ss_pred ECCHH
Q ss_conf 51202
Q gi|254780397|r 272 YHDQA 276 (343)
Q Consensus 272 YHDQg 276 (343)
-=.||
T Consensus 233 tV~sG 237 (396)
T PRK12735 233 RVERG 237 (396)
T ss_pred EEEEE
T ss_conf 98121
No 99
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=30.16 E-value=24 Score=16.51 Aligned_cols=27 Identities=19% Similarity=0.112 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECHHH
Q ss_conf 246778877664301234304432234
Q gi|254780397|r 98 STIANIEKAVSLTLSGQALAIVTNPIA 124 (343)
Q Consensus 98 ~~~~sl~~A~~l~~~g~~~alVT~PIn 124 (343)
-.+++.++.+...++..+|.+|-.+.+
T Consensus 131 D~ve~Akk~Vp~lk~~GaDvVIal~Hs 157 (578)
T PRK09420 131 DIVETARKYVPEMKEKGADIVVAIPHS 157 (578)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 789999999999986499999997166
No 100
>PRK13530 arsenate reductase; Provisional
Probab=29.91 E-value=44 Score=14.87 Aligned_cols=54 Identities=15% Similarity=0.251 Sum_probs=33.2
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECC
Q ss_conf 67079996366544531000012102445888642158764345551121000223667689998512
Q gi|254780397|r 207 NPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNIIGPLPADSMFHHSARQCYDVAICMYHD 274 (343)
Q Consensus 207 ~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHD 274 (343)
+=.+.=+|..|+. +=--|++-+++.|+++++-.| . .+......++|.||+|--+
T Consensus 31 ~~~v~SAG~~~~~------------v~p~ai~vm~e~Gidis~~~~-k-~i~~~~~~~~D~VIt~c~~ 84 (133)
T PRK13530 31 EWNVYSAGIEAHG------------VNPNAIKAMKEVGIDISNQTS-D-LIDNDILNNADLVVTLCSD 84 (133)
T ss_pred CEEEEECCCCCCC------------CCHHHHHHHHHCCCCCCCCCC-C-CCCHHHCCCCCEEEEECCC
T ss_conf 6699806778778------------698999999986916555787-7-5786462468989995664
No 101
>pfam05503 Pox_G7 Poxvirus G7-like.
Probab=29.60 E-value=31 Score=15.81 Aligned_cols=15 Identities=13% Similarity=0.494 Sum_probs=6.9
Q ss_pred CEEEEEEECCEEEEC
Q ss_conf 727999208764755
Q gi|254780397|r 287 QTVNITLGLPFVRTS 301 (343)
Q Consensus 287 ~~Vn~t~GLp~irtS 301 (343)
.||.++.+-||--++
T Consensus 345 ~gi~l~INSPfKtiT 359 (363)
T pfam05503 345 EGITLNINSPFKTIT 359 (363)
T ss_pred CCEEEEECCCCCEEC
T ss_conf 985899548840222
No 102
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=29.40 E-value=45 Score=14.82 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=40.7
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECCHHH
Q ss_conf 67079996366544531000012102445888642158764345551121000223667689998512022
Q gi|254780397|r 207 NPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQAL 277 (343)
Q Consensus 207 ~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQgl 277 (343)
+-.+.=+|+.|+-|+. .=.-|++.+++.|+++++ .+ .-+......++|.||+|=.+|-.
T Consensus 26 ~~~v~SAG~~~~~g~~---------~~~~a~~~l~~~Gid~s~-~s--r~i~~~~~~~~DlIl~Md~~~~~ 84 (140)
T smart00226 26 RVKIDSAGTGAWVGGG---------ADPRAVEVLKEHGIALSH-HA--SQLTSSDFKNADLVLAMDHSHLR 84 (140)
T ss_pred CEEEEEECCCCCCCCC---------CCHHHHHHHHHHCCCCCC-CC--CCCCHHHHHHCCEEEEECHHHHH
T ss_conf 7689850024667899---------998999999995988221-43--54878787169999990927899
No 103
>TIGR01433 CyoA ubiquinol oxidase, subunit II; InterPro: IPR006333 Members of this domain catalyze the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in Gram-positive bacteria but which is in complex with subunits which utilise cytochrome a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cytochrome c as the oxidant . ; GO: 0016682 oxidoreductase activity acting on diphenols and related substances as donors oxygen as acceptor, 0006118 electron transport, 0016020 membrane.
Probab=29.32 E-value=22 Score=16.72 Aligned_cols=18 Identities=44% Similarity=0.947 Sum_probs=13.1
Q ss_pred ECCCCCCCCCCCCCCCHHHHHH
Q ss_conf 3665445310000121024458
Q gi|254780397|r 215 LNPHAGENATIGIEEKNIIIPA 236 (343)
Q Consensus 215 LNPHAGE~G~~G~EE~~iI~Pa 236 (343)
|||| |.+|.||.+.|.=|
T Consensus 19 L~Pk----G~ig~eersLIL~a 36 (228)
T TIGR01433 19 LDPK----GQIGLEERSLILTA 36 (228)
T ss_pred CCCC----CCEEHHHHHHHHHH
T ss_conf 3888----86530246689999
No 104
>PRK00861 putative lipid kinase; Reviewed
Probab=29.08 E-value=46 Score=14.79 Aligned_cols=24 Identities=4% Similarity=0.112 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 888989999985313456707999
Q gi|254780397|r 190 ETSDTVYNAMKKYFGINNPRIAIS 213 (343)
Q Consensus 190 ~ki~~~~~~l~~~~gi~~PkIaV~ 213 (343)
-++.-+...++..+..+..++-|-
T Consensus 155 G~~aY~~~~l~~l~~~~~~~~~i~ 178 (296)
T PRK00861 155 GILAYILSGLQQLQELEPFEVEIE 178 (296)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 569999999999860797499999
No 105
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=28.59 E-value=35 Score=15.45 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=15.1
Q ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9636654453100001210244588864
Q gi|254780397|r 213 SGLNPHAGENATIGIEEKNIIIPAITYL 240 (343)
Q Consensus 213 ~gLNPHAGE~G~~G~EE~~iI~PaI~~~ 240 (343)
|.+-|-.|-+=++|++-+ .|.|.+-..
T Consensus 276 ~~Vs~iGgq~f~~Grgn~-qiSp~vl~~ 302 (355)
T COG3199 276 LVVSPIGGQGFLLGRGNQ-QISPRVLRK 302 (355)
T ss_pred EEEEECCCEEEEECCCCC-CCCHHHHHH
T ss_conf 999604530024434754-457266764
No 106
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; InterPro: IPR006009 The murG gene of Escherichia coli encodes the N-acetylglucosaminyltransferase, UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, responsible for the final step in the formation of the lipid-linked disaccharide-pentapeptide subunit of peptidoglycan. The enzyme is peripherally associated with the inner face of the cytoplasmic membrane. Therefore, the peptidoglycan subunit is completely assembled before it traverses the cytoplasmic membrane .; GO: 0050511 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity, 0019277 UDP-N-acetylgalactosamine biosynthetic process, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=27.19 E-value=49 Score=14.58 Aligned_cols=200 Identities=17% Similarity=0.218 Sum_probs=104.5
Q ss_pred CCCCCCEEEECCCCCCCCHHHHH-HHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCEEEEC
Q ss_conf 98888389971898774789999-98428523248989999399999999998189974475386101112678537610
Q gi|254780397|r 1 MDEFLPLILTQGDPAGIGPDISL-KAWASRQITAIPPFIYIGDVDVLNARAKQLNLSVPLYETDCKNAVSIFKKALPIIS 79 (343)
Q Consensus 1 M~k~~pI~IT~GDPaGIGpEIil-Kal~~~~~~~~~~~viigd~~~l~~~~k~l~~~~~i~~i~~~~~~~~~~~~i~i~~ 79 (343)
|+++++|+++-|=-.||.|=+.+ +.|.++. ....++++|+++-+++...--...+++..|+...
T Consensus 2 ~~~~~~~~~~gGGTGG~fPAlA~a~~l~~~~--~~~~v~~lG~~~g~e~~lv~~~~~~~~~~i~~~g------------- 66 (368)
T TIGR01133 2 MNKMKKVALAGGGTGGIFPALAVAEELIKRG--PEVEVVWLGTKRGLEERLVPSKEGIEFLTIPVGG------------- 66 (368)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECC-------------
T ss_conf 9882289997278302689999999999748--9369998506775000034321574177774010-------------
Q ss_pred CCCCCCCCCCCC-CCCCCH-HHHHHHHHHHHHHHCCCCCEEEE------CHHHHHHHHHHCCC-------CCCHHHH-HH
Q ss_conf 333220013553-100000-24677887766430123430443------22344777641013-------2564789-99
Q gi|254780397|r 80 SPCGAKIVTGTP-NPQTAS-STIANIEKAVSLTLSGQALAIVT------NPIAKFLLYQEKFK-------FPGHTEF-LA 143 (343)
Q Consensus 80 ~~~~~~~~~G~~-s~~~g~-~~~~sl~~A~~l~~~g~~~alVT------~PInK~~l~~aG~~-------f~GhTE~-La 143 (343)
-...+.. .-...- ..+..+..|-+..++-+-|++|. +|-.=.++...-.+ .+|-|== |+
T Consensus 67 -----l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~p~~v~G~GGY~s~P~~~AA~l~g~iP~~~EQN~~pG~~Nk~ls 141 (368)
T TIGR01133 67 -----LRRKGSKKLLKLPLLKLLKAVLQARRILKKFKPDVVVGFGGYVSGPAGLAAKLLGRIPLILEQNAVPGLTNKLLS 141 (368)
T ss_pred -----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHH
T ss_conf -----036551014678899999999999999860087479874736789999998766799489861541257888878
Q ss_pred HHHCCCCCCCCCCCCCCCCCCC---EEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC
Q ss_conf 9834235886652112332211---2665304531333432010245678889899999853134567079996366544
Q gi|254780397|r 144 ELAKKNTGITFKPVMMLSGPQL---RTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAG 220 (343)
Q Consensus 144 ~~~~~~~~~~~~~~Mll~~~~L---~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAG 220 (343)
..++.- ..++..+- ++ .=..+.+=-|.++.-..+..... ..+ +. ..-.+|+|-|.|
T Consensus 142 ~~A~~V-~~~f~~~~-----~~~~~~~~~~~~g~pvr~~~~~~~~~~~------~~~-~~--~~~~~~~ilv~G------ 200 (368)
T TIGR01133 142 RFAKRV-LVSFPGAK-----KFFPAAEKVVVVGNPVREEIRSLPAARA------RKR-FK--LRPGKLRILVLG------ 200 (368)
T ss_pred HHHCEE-EEECHHHH-----CCCCCCCCEEEECCHHHHHHHCCCCHHH------HHH-HC--CCCCCCEEEEEC------
T ss_conf 874431-11051332-----2676667568701413454303782568------886-21--689982799962------
Q ss_pred CCCCCCCCCCHHHHHHHHH-HHHC
Q ss_conf 5310000121024458886-4215
Q gi|254780397|r 221 ENATIGIEEKNIIIPAITY-LRND 243 (343)
Q Consensus 221 E~G~~G~EE~~iI~PaI~~-~~~~ 243 (343)
|--|-+-.....|.+-. |.++
T Consensus 201 --GSQGA~~lN~~vp~~~~~L~~~ 222 (368)
T TIGR01133 201 --GSQGAKILNELVPKALAKLAEK 222 (368)
T ss_pred --CCHHHHHHHHHHHHHHHHHHHC
T ss_conf --7376899999999999886401
No 107
>TIGR01110 mdcA malonate decarboxylase, alpha subunit; InterPro: IPR005777 This model describes malonate decarboxylase alpha subunit. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.; GO: 0016831 carboxy-lyase activity, 0006814 sodium ion transport.
Probab=26.95 E-value=34 Score=15.57 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHCCCCCCEEE-EEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 8889899999853134567079-99636654453100001210244588864
Q gi|254780397|r 190 ETSDTVYNAMKKYFGINNPRIA-ISGLNPHAGENATIGIEEKNIIIPAITYL 240 (343)
Q Consensus 190 ~ki~~~~~~l~~~~gi~~PkIa-V~gLNPHAGE~G~~G~EE~~iI~PaI~~~ 240 (343)
-+|+|+-=+|-+.+|+|= ||. =-.||||= .++||||.=
T Consensus 257 AAIELLLPTYg~~LGLKG-kIC~~waLNPHP------------TlIPAIE~G 295 (551)
T TIGR01110 257 AAIELLLPTYGESLGLKG-KICKNWALNPHP------------TLIPAIESG 295 (551)
T ss_pred HHHHHHHHHHHHHCCCCC-CCCCCCCCCCCC------------CCCCHHHCC
T ss_conf 999865455365428865-412676784487------------634410178
No 108
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ; InterPro: IPR004610 All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. RecJ is a single-stranded DNA-specific endonuclease which is required for many types of recombination events, although the stringency of the requirement for RecJ appears to vary with the type of recombinational event monitored, and the other recombination gene products which are available.; GO: 0008409 5'-3' exonuclease activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=26.14 E-value=52 Score=14.47 Aligned_cols=80 Identities=18% Similarity=0.128 Sum_probs=32.5
Q ss_pred CEEEECCHH--------HHHHHHHHCC--CCCCEEECCCCHH-CCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 899993999--------9999999818--9974475386101-1126785376103332200135531000002467788
Q gi|254780397|r 36 PFIYIGDVD--------VLNARAKQLN--LSVPLYETDCKNA-VSIFKKALPIISSPCGAKIVTGTPNPQTASSTIANIE 104 (343)
Q Consensus 36 ~~viigd~~--------~l~~~~k~l~--~~~~i~~i~~~~~-~~~~~~~i~i~~~~~~~~~~~G~~s~~~g~~~~~sl~ 104 (343)
++.||||++ +|.+..+.+| ..+.+..-+...+ .-.++..+ +.-....++ =.++..||-.+++.+
T Consensus 57 ki~i~GDyDvDGiTSt~~l~~~L~~lGp~~~~~~~IPnR~~egYG~~~~~~---~~~~~~G~~-LiiTVD~Gi~a~~e~- 131 (705)
T TIGR00644 57 KILIFGDYDVDGITSTAILVEFLRELGPYVQVDYYIPNRFTEGYGLSPEAL---RELKENGVS-LIITVDNGISAHEEI- 131 (705)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHH---HHHHHCCCE-EEEECCCCHHHHHHH-
T ss_conf 389996175226899999999999509973246662663577778898999---999866983-999826874269999-
Q ss_pred HHHHHHHCCCCCEEEECHH
Q ss_conf 7766430123430443223
Q gi|254780397|r 105 KAVSLTLSGQALAIVTNPI 123 (343)
Q Consensus 105 ~A~~l~~~g~~~alVT~PI 123 (343)
+.|++..++.|||==.
T Consensus 132 ---~~a~~~G~dVIVtDHH 147 (705)
T TIGR00644 132 ---EYAKELGIDVIVTDHH 147 (705)
T ss_pred ---HHHHHCCCEEEEECCC
T ss_conf ---9998669819997256
No 109
>COG4002 Predicted phosphotransacetylase [General function prediction only]
Probab=25.82 E-value=52 Score=14.43 Aligned_cols=182 Identities=19% Similarity=0.250 Sum_probs=101.4
Q ss_pred HHHHHCCCCCEEEECHHHHHHHH----HH-CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHH
Q ss_conf 66430123430443223447776----41-01325647899998342358866521123322112665304531333432
Q gi|254780397|r 107 VSLTLSGQALAIVTNPIAKFLLY----QE-KFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICR 181 (343)
Q Consensus 107 ~~l~~~g~~~alVT~PInK~~l~----~a-G~~f~GhTE~La~~~~~~~~~~~~~~Mll~~~~L~V~l~TtHiPLk~V~~ 181 (343)
++...+|++||-|-+-.+-+... .+ |.+|.+-..+|.--+ ...+-.+|+-+- +
T Consensus 56 ve~Lv~g~~daaVRGslsas~v~~eLkealgm~~~~Ras~le~~~---------------~~~flLaPVGID-------E 113 (256)
T COG4002 56 VEKLVDGEIDAAVRGSLSASKVILELKEALGMKFYCRASILENPF---------------TNGFLLAPVGID-------E 113 (256)
T ss_pred HHHHHCCCHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEEECCC---------------CCCEEEECCCCC-------C
T ss_conf 999974503677744543225899999853887313210124588---------------673487431148-------8
Q ss_pred HCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCC--CCHHHHH---HHHHHHHCCCCCCCCCCCHHH
Q ss_conf 01024567888989999985313456707999636654453100001--2102445---888642158764345551121
Q gi|254780397|r 182 ILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIE--EKNIIIP---AITYLRNDNKNIIGPLPADSM 256 (343)
Q Consensus 182 ~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~E--E~~iI~P---aI~~~~~~g~~v~GP~paDt~ 256 (343)
-=|-+--.+-+.+..+++++ .|+ .|++||+. .|--|.+|+. =.++|.. ..+.++..|+++.- -+.
T Consensus 114 g~ti~dk~ri~~laaeflrr-~~~-ep~VaVlS----gGRlgDlGR~~~VDrtladgEfva~~~k~~g~~v~H----~~I 183 (256)
T COG4002 114 GKTIKDKIRIIELAAEFLRR-TGI-EPKVAVLS----GGRLGDLGRNKEVDRTLADGEFVAEHFKGNGVDVIH----YGI 183 (256)
T ss_pred CCCHHHHHHHHHHHHHHHHH-HCC-CCCEEEEC----CCCCHHCCCCCHHHHHHHCHHHHHHHHHCCCCEEEE----EEE
T ss_conf 84177778999999999997-098-96169950----773000257621202432329999987416822689----666
Q ss_pred EECCCCCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECC--------EEEECCCCCCCHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 0002236676899985120225555414477279992087--------64755887552221336866838999999999
Q gi|254780397|r 257 FHHSARQCYDVAICMYHDQALIPIKTLDFNQTVNITLGLP--------FVRTSPDHGTAFDIAGSSLTQEESLVSALKIA 328 (343)
Q Consensus 257 F~~~~~~~~D~vlamYHDQglip~K~l~f~~~Vn~t~GLp--------~irtSpdHGTafdiagk~~a~~~s~~~ai~~a 328 (343)
......++-|++++---=-|-.-|.+|+|-.+. -..|-| |+-||-. ++.+.+..|++++
T Consensus 184 LIEealkdgnvIia~dGItGNLiFR~l~lvgg~-~g~GAp~al~~d~vFVDTSR~------------q~a~~yarAlkfl 250 (256)
T COG4002 184 LIEEALKDGNVIIAVDGITGNLIFRCLGLVGGI-RGYGAPIALDKDVVFVDTSRN------------QNAEGYARALKFL 250 (256)
T ss_pred EHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCCCEEECCCCEEEECHHH------------HHHHHHHHHHHHH
T ss_conf 778786148889975675430455567775366-777883474488189866045------------5489999999998
Q ss_pred HHHHH
Q ss_conf 99998
Q gi|254780397|r 329 AQLGY 333 (343)
Q Consensus 329 ~~~~~ 333 (343)
..++.
T Consensus 251 ~~~a~ 255 (256)
T COG4002 251 HGLAF 255 (256)
T ss_pred HHHHC
T ss_conf 75414
No 110
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB; InterPro: IPR005980 NifB is a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack most of the C-terminal region and are excluded from this model.; GO: 0009108 coenzyme biosynthetic process, 0009399 nitrogen fixation.
Probab=25.54 E-value=53 Score=14.40 Aligned_cols=133 Identities=21% Similarity=0.365 Sum_probs=78.1
Q ss_pred CCCEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 21126653045313334320102456788898999998531345670799963665445310000121024458886421
Q gi|254780397|r 163 PQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRN 242 (343)
Q Consensus 163 ~~L~V~l~TtHiPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~ 242 (343)
.++++|+=|.=+-|=++.+.| -++|+.+=.|-+=.+-|--|| .|=|+|-.
T Consensus 109 PDvklCLSTNGL~LP~~vDrl-----------------vdlgvdHVTiTiN~iDP~vG~----------~IYpWv~y--- 158 (461)
T TIGR01290 109 PDVKLCLSTNGLALPEHVDRL-----------------VDLGVDHVTITINAIDPEVGE----------KIYPWVAY--- 158 (461)
T ss_pred CCEEEECCCCCCCCHHHHHHH-----------------HHCCCCCEEEEECCCCHHHHC----------EECCCEEE---
T ss_conf 821420012656313465246-----------------423888179883140635510----------30652332---
Q ss_pred CCCCCCCCCCCHHHEECCCC-----------CCCC-EEEEEECCHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCHHH
Q ss_conf 58764345551121000223-----------6676-89998512022555541447727999208764755887552221
Q gi|254780397|r 243 DNKNIIGPLPADSMFHHSAR-----------QCYD-VAICMYHDQALIPIKTLDFNQTVNITLGLPFVRTSPDHGTAFDI 310 (343)
Q Consensus 243 ~g~~v~GP~paDt~F~~~~~-----------~~~D-~vlamYHDQglip~K~l~f~~~Vn~t~GLp~irtSpdHGTafdi 310 (343)
+|-.-+|=-.|+-+.-+... -+-. +.+====||=|+-+--.--+.|--+-==.|.| ..|.|||-|.+
T Consensus 159 ~G~RY~Gr~Aa~lL~erQl~G~~~L~ergiL~KvNSvlIPGiND~HL~eVsk~vk~~GAfLHNvmPLi-s~PeHGt~ygl 237 (461)
T TIGR01290 159 EGKRYTGREAAKLLIERQLEGLEKLTERGILVKVNSVLIPGINDEHLVEVSKKVKELGAFLHNVMPLI-SAPEHGTVYGL 237 (461)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEECCCCCCHHHHHHHHHHHCCCCHHCCCCCCE-ECCCCCCCCCC
T ss_conf 67333548999998999999999997388548880064389881789998777510464000544210-14898831167
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 33686683899999999
Q gi|254780397|r 311 AGSSLTQEESLVSALKI 327 (343)
Q Consensus 311 agk~~a~~~s~~~ai~~ 327 (343)
-|+-.-++ +++.|++-
T Consensus 238 ~Gq~~P~~-~el~~l~~ 253 (461)
T TIGR01290 238 NGQRAPAP-SELKALRD 253 (461)
T ss_pred CCCCCCCH-HHHHHHHH
T ss_conf 87888898-99999999
No 111
>TIGR02845 spore_V_AD stage V sporulation protein AD; InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation ..
Probab=25.42 E-value=39 Score=15.18 Aligned_cols=74 Identities=19% Similarity=0.293 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHC-CCCCCCCCCCCCCC--CCCCEEEEECC
Q ss_conf 024677887766430123430443223447776410132564789999834-23588665211233--22112665304
Q gi|254780397|r 97 SSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAK-KNTGITFKPVMMLS--GPQLRTVPVTI 172 (343)
Q Consensus 97 ~~~~~sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~-~~~~~~~~~~Mll~--~~~L~V~l~Tt 172 (343)
.-++|.|-.+..+..-|-+|-+.++==|=.+--+--|.|| |||=.++-. .....|+--.++|. .++.||-.+|+
T Consensus 108 sTs~E~L~~gA~lv~GGfAd~vLaAtSSHy~taERQFRYP--TEyG~Qkp~tAq~TVTGAGA~~l~~~~~~~~it~aT~ 184 (331)
T TIGR02845 108 STSMETLALGAMLVDGGFADRVLAATSSHYATAERQFRYP--TEYGVQKPPTAQWTVTGAGAVLLASTGGGPRITSATI 184 (331)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHCCCC--CCCCCCCCCCCCCCEEHHHEEEECCCCCCCEEEEEEE
T ss_conf 7899999999999832002211112111135322102565--1256115998861250346486544789436414530
No 112
>KOG2195 consensus
Probab=24.91 E-value=54 Score=14.33 Aligned_cols=94 Identities=18% Similarity=0.186 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC---EEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 200135531000002467788776643012343---04432234477764101325647899998342358866521123
Q gi|254780397|r 84 AKIVTGTPNPQTASSTIANIEKAVSLTLSGQAL---AIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMML 160 (343)
Q Consensus 84 ~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~---alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Mll 160 (343)
..+.+|-.++.+|.+++.-+.++....++.-.. -|+.+ +|-..-|...|=|||+.+....-. ...++++
T Consensus 362 DSw~~Ga~dp~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~-----sWdAeEfGliGStE~~E~~~~~L~---~~av~yi 433 (702)
T KOG2195 362 DSWTFGAIDPNSGTALLLEIARALSKLKKRGWRPRRTILFA-----SWDAEEFGLLGSTEWAEEYLKNLK---SRAVVYI 433 (702)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEE-----ECCCHHCCCCCCHHHHHHHHHHHH---HEEEEEE
T ss_conf 43233776798438999999999999987388766428999-----707412266450899999998753---2258999
Q ss_pred -----CCCCCEEEEECCCCCHHHHHHHCCHH
Q ss_conf -----32211266530453133343201024
Q gi|254780397|r 161 -----SGPQLRTVPVTIHIPIADICRILSTK 186 (343)
Q Consensus 161 -----~~~~L~V~l~TtHiPLk~V~~~it~~ 186 (343)
..++ -...+.+|-.|.++.....+.
T Consensus 434 n~d~~~~~~-~~l~~~~~PlL~~li~~~~k~ 463 (702)
T KOG2195 434 NVDNAVLGD-YTLHVKTTPLLTDLIEEAAKS 463 (702)
T ss_pred ECCCCCCCC-CEEEEECCCCHHHHHHHHHHC
T ss_conf 325312478-616871574479999999851
No 113
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=24.91 E-value=55 Score=14.33 Aligned_cols=65 Identities=18% Similarity=0.310 Sum_probs=47.6
Q ss_pred EEEEEECCHHHHHHHHHC---CCCEE--E--EEEECCEEEECCCCC------CCHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 899985120225555414---47727--9--992087647558875------52221336866838999999999999
Q gi|254780397|r 267 VAICMYHDQALIPIKTLD---FNQTV--N--ITLGLPFVRTSPDHG------TAFDIAGSSLTQEESLVSALKIAAQL 331 (343)
Q Consensus 267 ~vlamYHDQglip~K~l~---f~~~V--n--~t~GLp~irtSpdHG------Tafdiagk~~a~~~s~~~ai~~a~~~ 331 (343)
.-|.+|||++.-.+...+ -|+.| | ++=||.|-++||--+ +-|.+-=...+|...|-.+++-|++.
T Consensus 32 s~V~~~~~~~~~~yrIvg~r~~d~~vvinc~i~~~l~Y~kat~~FHqWrd~r~v~GL~F~S~~dA~~F~~~v~~Ale~ 109 (111)
T cd01207 32 SRVQIYHHPRNNTFRVVGRKLQDHQVVINCAIVKGLKYNQATPTFHQWRDARQVYGLNFGSKEDATMFASAMLSALEV 109 (111)
T ss_pred EEEEEEECCCCCCCEEEEEEECCCEEEEEEECCCCCEEEECCCCCEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 889998569988767998773798799985358997787547762022738889620459999999999999999874
No 114
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=24.55 E-value=55 Score=14.29 Aligned_cols=103 Identities=19% Similarity=0.305 Sum_probs=57.8
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHEECCCCCCCCEEEEEECCH----HHHHHHH
Q ss_conf 670799963665445310000121024458886421587643455511210002236676899985120----2255554
Q gi|254780397|r 207 NPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNIIGPLPADSMFHHSARQCYDVAICMYHDQ----ALIPIKT 282 (343)
Q Consensus 207 ~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~GP~paDt~F~~~~~~~~D~vlamYHDQ----glip~K~ 282 (343)
+-++.+.| + |.+ .+.+.-.++++.-..+...|++|.+.+ ...+...|+++.-+.+. +-.|.|+
T Consensus 250 ~~~l~ivG------~----G~~-~~~l~~~~~~~~~~~V~~~G~v~~~~~--~~~~~~adi~v~p~~~~~~~~~~~P~kl 316 (394)
T cd03794 250 DIRFLIVG------D----GPE-KEELKELAKALGLDNVTFLGRVPKEEL--PELLAAADVGLVPLKPGPAFEGVSPSKL 316 (394)
T ss_pred CEEEEEEC------C----CHH-HHHHHHHHHHCCCCEEEECCCCCCCHH--HHHHHCCCEEEEECCCCCCCCCCCHHHH
T ss_conf 85999956------8----516-789999999819994998163046136--7787429699992777544577356899
Q ss_pred HCCCCEEEEEEECCEEEECCCCCCCHHHCCCCC-------CCHHHHHHHHHHHH
Q ss_conf 144772799920876475588755222133686-------68389999999999
Q gi|254780397|r 283 LDFNQTVNITLGLPFVRTSPDHGTAFDIAGSSL-------TQEESLVSALKIAA 329 (343)
Q Consensus 283 l~f~~~Vn~t~GLp~irtSpdHGTafdiagk~~-------a~~~s~~~ai~~a~ 329 (343)
+.- ...|+|+|-|.. -|+ -++...|. -|+.+|.++|....
T Consensus 317 lEA-----ma~G~PVV~s~~-gg~-~e~i~~~~~G~l~~~~d~~~la~~i~~ll 363 (394)
T cd03794 317 FEY-----MAAGKPVLASVD-GES-AELVEEAGAGLVVPPGDPEALAAAILELL 363 (394)
T ss_pred HHH-----HHCCCCEEEECC-CCH-HHHEECCCEEEEECCCCHHHHHHHHHHHH
T ss_conf 999-----984997999589-980-77612188089977999999999999997
No 115
>pfam05167 DUF711 Uncharacterized ACR (DUF711). The proteins in this family are functionally uncharacterized. The proteins are around 450 amino acids long.
Probab=24.50 E-value=55 Score=14.28 Aligned_cols=43 Identities=12% Similarity=0.195 Sum_probs=20.9
Q ss_pred HHHHHHHCCHH--HHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf 33343201024--567888989999985313456707999636654
Q gi|254780397|r 176 IADICRILSTK--RIIETSDTVYNAMKKYFGINNPRIAISGLNPHA 219 (343)
Q Consensus 176 Lk~V~~~it~~--~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHA 219 (343)
+.++.+.|.+. +|.+..+++-+..-+.+|++. -+.=+.|.|+-
T Consensus 208 ~~~l~e~ik~~afkitr~gelvg~~~a~~lgv~f-ggvDlSLAPsP 252 (390)
T pfam05167 208 LEALAETIKKTAFKITRMGELVGREVAERLGVPF-GGVDLSLAPSP 252 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE-EEEECCCCCCC
T ss_conf 8999999999999988999999999999739945-66507778998
No 116
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=23.00 E-value=59 Score=14.11 Aligned_cols=102 Identities=18% Similarity=0.246 Sum_probs=58.4
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH-HCCCCCCCCCCCHHHEECCCCCCCCEEEEEEC----CHHHHHH
Q ss_conf 567079996366544531000012102445888642-15876434555112100022366768999851----2022555
Q gi|254780397|r 206 NNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLR-NDNKNIIGPLPADSMFHHSARQCYDVAICMYH----DQALIPI 280 (343)
Q Consensus 206 ~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~-~~g~~v~GP~paDt~F~~~~~~~~D~vlamYH----DQglip~ 280 (343)
++-++-++| + |.|+. .+.-.++++. ...+...|.+|.+.+ ...+...|++|-..+ =.|+.++
T Consensus 217 ~~~~l~i~G------~----G~~~~-~l~~~~~~~~~~~~V~f~G~~~~~~~--~~~~~~adi~v~pS~~~~Egfg~~~l 283 (357)
T cd03795 217 PDAPLVIVG------E----GPLEA-ELEALAAALGLLDRVRFLGRLDDEEK--AALLAACDVFVFPSVERSEAFGIVLL 283 (357)
T ss_pred CCEEEEEEE------C----CCCCC-CCCCHHHHCCCCCEEEECCCCCHHHH--HHHHHCCCEEEEECCHHCCCCCHHHH
T ss_conf 890999995------6----75422-21000555187514752586514557--98862687899946402135666799
Q ss_pred HHHCCCCEEEEEEECCEEEECCCCCCCHHH-CCC-C----CCCHHHHHHHHHHH
Q ss_conf 541447727999208764755887552221-336-8----66838999999999
Q gi|254780397|r 281 KTLDFNQTVNITLGLPFVRTSPDHGTAFDI-AGS-S----LTQEESLVSALKIA 328 (343)
Q Consensus 281 K~l~f~~~Vn~t~GLp~irtSpdHGTafdi-agk-~----~a~~~s~~~ai~~a 328 (343)
-+++ .|+|+|-|.+..|...=+ -|+ | --|+.+|.++|...
T Consensus 284 EAma--------~G~PVVat~~gg~~~~i~~~~~~G~l~~~~d~~~l~~~i~~l 329 (357)
T cd03795 284 EAMA--------FGKPVISTEIGTGGSYVNLHGVTGLVVPPGDPAALAEAIRRL 329 (357)
T ss_pred HHHH--------CCCCEEEECCCCCHHHHEECCCEEEEECCCCHHHHHHHHHHH
T ss_conf 9998--------799899935999815605569579997899999999999999
No 117
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase; InterPro: IPR010081 This small family includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 0dentical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase)..
Probab=22.85 E-value=34 Score=15.53 Aligned_cols=40 Identities=23% Similarity=0.225 Sum_probs=23.0
Q ss_pred EEECCCCCCCCHHHHHHHHCCCCHHCCCCEEEECCHHHHHHHHHHCCCC
Q ss_conf 9971898774789999984285232489899993999999999981899
Q gi|254780397|r 8 ILTQGDPAGIGPDISLKAWASRQITAIPPFIYIGDVDVLNARAKQLNLS 56 (343)
Q Consensus 8 ~IT~GDPaGIGpEIilKal~~~~~~~~~~~viigd~~~l~~~~k~l~~~ 56 (343)
++.|||||-|+-||+ |- .+.++|=++=.+-++.++.++-+
T Consensus 274 GLACGEPN~isw~Il-rn--------~ts~FiSa~D~vaakGMR~lgaP 313 (378)
T TIGR01747 274 GLACGEPNIISWEIL-RN--------NTSFFISADDSVAAKGMRVLGAP 313 (378)
T ss_pred HHHCCCCCCCCHHHH-HC--------CCCEEEECCHHHHHCCCEEECCC
T ss_conf 331588887754877-32--------76426614246752155432387
No 118
>TIGR02573 LcrG_PcrG type III secretion protein LcrG; InterPro: IPR009863 This family consists of several bacterial LcrG proteins. Yersiniae are equipped with the Yop virulon, an apparatus that allows extracellular bacteria to deliver toxic Yop proteins inside the host cell cytosol in order to sabotage the communication networks of the host cell or even to cause cell death. LcrG is a component of the Yop virulon involved in the regulation of secretion of the Yops . This protein is found in type III secretion operons, along with LcrR, H and V. Also known as PcrG in Pseudomonas, the prot ein is believed to make a 1:1 complex with PcrV (LcrV) . Mutations in LcrG cause premature secretion of effector proteins into the medium ..
Probab=22.66 E-value=24 Score=16.43 Aligned_cols=29 Identities=34% Similarity=0.423 Sum_probs=22.3
Q ss_pred EEECCCCCCCCCCCCCCC--HHHHHHHHHHHH
Q ss_conf 963665445310000121--024458886421
Q gi|254780397|r 213 SGLNPHAGENATIGIEEK--NIIIPAITYLRN 242 (343)
Q Consensus 213 ~gLNPHAGE~G~~G~EE~--~iI~PaI~~~~~ 242 (343)
+||||-||+. +||.-+. +.+.+|=++|-.
T Consensus 32 LG~~p~ag~~-Lf~~~~~sP~l~~~AE~ELL~ 62 (93)
T TIGR02573 32 LGLAPEAGEK-LFGGLEASPELVQAAEQELLE 62 (93)
T ss_pred CCCCHHHHHH-HHCCCCCCHHHHHHHHHHHHH
T ss_conf 6986688999-864689786889989999999
No 119
>KOG2764 consensus
Probab=21.55 E-value=64 Score=13.93 Aligned_cols=129 Identities=16% Similarity=0.057 Sum_probs=58.4
Q ss_pred CCCCCEEEECH-HHHHHHHHH-CCCCCCH---HHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCHH
Q ss_conf 12343044322-344777641-0132564---789999834235886652112332211266530453133343201024
Q gi|254780397|r 112 SGQALAIVTNP-IAKFLLYQE-KFKFPGH---TEFLAELAKKNTGITFKPVMMLSGPQLRTVPVTIHIPIADICRILSTK 186 (343)
Q Consensus 112 ~g~~~alVT~P-InK~~l~~a-G~~f~Gh---TE~La~~~~~~~~~~~~~~Mll~~~~L~V~l~TtHiPLk~V~~~it~~ 186 (343)
.+.+.+++-+| +-..++-.. |.+-++| -+.|..- +-+ ..... ....++|-+. -=| -
T Consensus 100 gkLIaaICaap~~al~a~gl~~gkk~T~~ps~k~~L~~~-gy~-yve~~---vv~dG~liTS----rGp----------g 160 (247)
T KOG2764 100 GKLIAAICAAPLTALAAHGLLGGKKCTAHPSVKPKLEEG-GYK-YVEPR---VVKDGNLITS----RGP----------G 160 (247)
T ss_pred CCEEEEEECCHHHHHHHCCCCCCCEEEECCCHHHHHHHC-CCE-EECCC---EEEECCEEEC----CCC----------C
T ss_conf 996998620569897416555661455341055667636-837-74387---6870718863----689----------7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCC----EEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHH-----E
Q ss_conf 5678889899999853134567----079996366544531000012102445888642158764345551121-----0
Q gi|254780397|r 187 RIIETSDTVYNAMKKYFGINNP----RIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNIIGPLPADSM-----F 257 (343)
Q Consensus 187 ~I~~ki~~~~~~l~~~~gi~~P----kIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v~GP~paDt~-----F 257 (343)
.-.+.+..+.+.| +|-.+- +..++-.||-|- +.|+.|...-|+--+++..+-++-+ .-.+ |
T Consensus 161 T~~eFal~lvEqL---~GKeka~~v~~~l~l~~~~v~~-----~~~~~e~~a~~~~~~~~~~v~~~~~--g~~~~~~~~~ 230 (247)
T KOG2764 161 TAFEFALKLVEQL---GGKEKANEVKKPLSLLFLPVAP-----EKKAGEACATADHDLEGRQVPVEKV--GHNFAKTVAW 230 (247)
T ss_pred CHHHHHHHHHHHH---CCCHHHHHHHCCCEEECCCCCC-----CCHHCCEECCEEHHHHCCCCEEECC--CCCEEEEEEE
T ss_conf 4478999999996---4805666652250213034489-----7201042111000130375413315--6533799872
Q ss_pred ECCCCCCCCEEE
Q ss_conf 002236676899
Q gi|254780397|r 258 HHSARQCYDVAI 269 (343)
Q Consensus 258 ~~~~~~~~D~vl 269 (343)
-......||++|
T Consensus 231 dd~~~~syD~iv 242 (247)
T KOG2764 231 DDAAVSSYDLIV 242 (247)
T ss_pred HHHHCCCCCEEE
T ss_conf 033305566798
No 120
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=21.19 E-value=65 Score=13.88 Aligned_cols=102 Identities=15% Similarity=0.223 Sum_probs=55.5
Q ss_pred CCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC--CCCC
Q ss_conf 31333432010245678889899999853134567079996366544531000012102445888642158764--3455
Q gi|254780397|r 174 IPIADICRILSTKRIIETSDTVYNAMKKYFGINNPRIAISGLNPHAGENATIGIEEKNIIIPAITYLRNDNKNI--IGPL 251 (343)
Q Consensus 174 iPLk~V~~~it~~~I~~ki~~~~~~l~~~~gi~~PkIaV~gLNPHAGE~G~~G~EE~~iI~PaI~~~~~~g~~v--~GP~ 251 (343)
.+|-+....++...-...++.+.+.|. ..+..||+|+||-=-.+ ..+-..---.+.++.|+++|.+| +-|+
T Consensus 283 ~~l~~~a~~iN~~~~~~~~~~i~~~l~---~~~~~~I~ilGlafK~~----tdD~R~Sps~~ii~~L~~~g~~V~~~DP~ 355 (411)
T TIGR03026 283 PELIEAAREINDSQPDYVVEKILDLLG---PLKGKTVLILGLAFKPN----TDDVRESPALDIIELLKEKGAKVKAYDPL 355 (411)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCEEEEEEEEECCC----CCCCCCCCHHHHHHHHHHCCCEEEEECCC
T ss_conf 149999999999999999999998663---11666137874110699----98534582999999999788989999998
Q ss_pred CCHHHEEC--------CCCCCCCEEE-EEECCHHHHHHHHHCCC
Q ss_conf 51121000--------2236676899-98512022555541447
Q gi|254780397|r 252 PADSMFHH--------SARQCYDVAI-CMYHDQALIPIKTLDFN 286 (343)
Q Consensus 252 paDt~F~~--------~~~~~~D~vl-amYHDQglip~K~l~f~ 286 (343)
-.+..+.. ...+++|+++ +-=|+| ||-+++.
T Consensus 356 v~~~~~~~~~~~~~~~~~~~~aD~iii~t~h~e----f~~ld~~ 395 (411)
T TIGR03026 356 VPEEEVKGLPLIDDLEEALKGADALVILTDHDE----FKDLDLE 395 (411)
T ss_pred CCHHHHHCCCCCCCHHHHHHCCCEEEEECCCHH----HHCCCHH
T ss_conf 998998127777999999846988999559866----7238999
No 121
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain; InterPro: IPR005976 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene , . Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes . It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I .; GO: 0016163 nitrogenase activity, 0009399 nitrogen fixation, 0016612 molybdenum-iron nitrogenase complex.
Probab=21.01 E-value=65 Score=13.86 Aligned_cols=135 Identities=18% Similarity=0.236 Sum_probs=60.1
Q ss_pred EEECCHHHHHHHHHHCCCCCCEEECCCCHHC-CCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9993999999999981899744753861011-126785376103332200135531000002467788776643012343
Q gi|254780397|r 38 IYIGDVDVLNARAKQLNLSVPLYETDCKNAV-SIFKKALPIISSPCGAKIVTGTPNPQTASSTIANIEKAVSLTLSGQAL 116 (343)
Q Consensus 38 viigd~~~l~~~~k~l~~~~~i~~i~~~~~~-~~~~~~i~i~~~~~~~~~~~G~~s~~~g~~~~~sl~~A~~l~~~g~~~ 116 (343)
++||+...+++-...+++.-.+-. +..+.. +..-+....++ |-- .++.+.+ -..
T Consensus 235 YCiGN~R~~Kr~L~~mGv~~~~L~-D~~~~LDsP~dGey~mY~---------gGT----------~lee~~~-----A~n 289 (526)
T TIGR01286 235 YCIGNVREIKRILSLMGVEYTLLS-DAEESLDSPADGEYRMYD---------GGT----------KLEELKD-----ALN 289 (526)
T ss_pred CEECCHHHHHHHHHHHCCCCEEEC-CCHHHCCCCCCCCCCCCC---------CCC----------CHHHHHC-----CCC
T ss_conf 111656889789987289830304-655436798888712267---------788----------6576423-----601
Q ss_pred EEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC--CEEEEECCCCCHHHHHHHCCHHH--HHHHH
Q ss_conf 044322344777641013256478999983423588665211233221--12665304531333432010245--67888
Q gi|254780397|r 117 AIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGITFKPVMMLSGPQ--LRTVPVTIHIPIADICRILSTKR--IIETS 192 (343)
Q Consensus 117 alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~~~~~~~~~Mll~~~~--L~V~l~TtHiPLk~V~~~it~~~--I~~ki 192 (343)
|.-|.-+....+.+ =-||+.+.++.++..-..|.=+-..|. ++|+- |.=++||+.|+.++ +...+
T Consensus 290 A~atl~LQ~y~l~k-------T~eYie~~W~~et~~l~~PlGv~~TDeFLm~vs~----isg~eiP~~l~~eRGRlVDam 358 (526)
T TIGR01286 290 AEATLVLQEYTLRK-------TKEYIEKKWKQETVKLEIPLGVKGTDEFLMKVSE----ISGQEIPAELTIERGRLVDAM 358 (526)
T ss_pred HHHEEECCCCCCHH-------HHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH----HCCCCCHHHHHHHCCCHHHHH
T ss_conf 01122212434235-------6886527775124452478874077899999998----507876278885103302555
Q ss_pred HHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 9899999853134567079996
Q gi|254780397|r 193 DTVYNAMKKYFGINNPRIAISG 214 (343)
Q Consensus 193 ~~~~~~l~~~~gi~~PkIaV~g 214 (343)
.-.+.++ =| -|.||.|
T Consensus 359 tDs~awl---HG---Kr~Ai~G 374 (526)
T TIGR01286 359 TDSQAWL---HG---KRVAIYG 374 (526)
T ss_pred HHHHHHH---HH---CCEEEEC
T ss_conf 5433434---00---3045405
No 122
>TIGR01020 rpsE_arch ribosomal protein S5; InterPro: IPR005711 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This model finds eukaryotic ribosomal protein S2 as well as archaeal ribosomal protein S5.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=20.72 E-value=52 Score=14.43 Aligned_cols=38 Identities=24% Similarity=0.263 Sum_probs=26.5
Q ss_pred HHHHHCCCCCEEEECHHHHHHHHHHCCC-----CCCHHHHHHH
Q ss_conf 6643012343044322344777641013-----2564789999
Q gi|254780397|r 107 VSLTLSGQALAIVTNPIAKFLLYQEKFK-----FPGHTEFLAE 144 (343)
Q Consensus 107 ~~l~~~g~~~alVT~PInK~~l~~aG~~-----f~GhTE~La~ 144 (343)
+.|.=.=+=-|||-||+-|..|..||.+ =-|+|-=+--
T Consensus 150 V~LiPAP~G~GLVaGDV~K~~L~LAGI~DVWt~T~G~T~Tt~N 192 (220)
T TIGR01020 150 VRLIPAPKGVGLVAGDVAKKVLRLAGIKDVWTQTRGETRTTVN 192 (220)
T ss_pred EEEECCCCCCEEEECCHHHHHHHHCCCCEEEECCCCCCCCCCH
T ss_conf 9987499962388746446887745962354045560223303
No 123
>pfam11821 DUF3341 Protein of unknown function (DUF3341). This family of proteins are functionally uncharacterized. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=20.51 E-value=60 Score=14.06 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=8.7
Q ss_pred EECCHHHHHHHHHHCC
Q ss_conf 9939999999999818
Q gi|254780397|r 39 YIGDVDVLNARAKQLN 54 (343)
Q Consensus 39 iigd~~~l~~~~k~l~ 54 (343)
.+.|.+.+-..++++.
T Consensus 8 ~F~~~~~l~~A~~~~r 23 (173)
T pfam11821 8 EFDDPDALLDAVKKLR 23 (173)
T ss_pred EECCHHHHHHHHHHHH
T ss_conf 9789899999999999
No 124
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase; InterPro: IPR010233 This entry represents an O-methyltransferase, which is believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and mitochondria (COQ3) , . A separate methylase (MenG/UbiE) catalyses the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.; GO: 0008425 2-polyprenyl-6-methoxy-14-benzoquinone methyltransferase activity, 0006744 ubiquinone biosynthetic process.
Probab=20.24 E-value=51 Score=14.48 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=19.3
Q ss_pred CEEEEECCCCCHHHHHHHCCHHHHHHHHH
Q ss_conf 12665304531333432010245678889
Q gi|254780397|r 165 LRTVPVTIHIPIADICRILSTKRIIETSD 193 (343)
Q Consensus 165 L~V~l~TtHiPLk~V~~~it~~~I~~ki~ 193 (343)
||.+|-=|| +-.|.|+++-|.+-++
T Consensus 215 Lr~vPKGTH----~~~KFi~P~EL~~~l~ 239 (275)
T TIGR01983 215 LRWVPKGTH----DWEKFIKPSELTSWLE 239 (275)
T ss_pred HHCCCCCCC----CCCCCCCHHHHHHHHH
T ss_conf 516898724----7101538799999985
No 125
>TIGR02389 RNA_pol_rpoA2 DNA-directed RNA polymerase, subunit A''; InterPro: IPR012757 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length . The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kD, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of the archaeal A'' subunit of the DNA-directed RNA polymerase. The example from Methanococcus jannaschii contains an intein.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006350 transcription.
Probab=20.19 E-value=23 Score=16.63 Aligned_cols=48 Identities=8% Similarity=-0.060 Sum_probs=37.8
Q ss_pred HHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCC
Q ss_conf 788776643012343044322344777641013256478999983423
Q gi|254780397|r 102 NIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKN 149 (343)
Q Consensus 102 sl~~A~~l~~~g~~~alVT~PInK~~l~~aG~~f~GhTE~La~~~~~~ 149 (343)
.|+.-++..--.-++.-||--+|-+.++..|.....-.+-+.+..+..
T Consensus 130 ~l~~v~~~i~~D~~~~~v~i~Ld~~~~~~r~~t~d~v~~a~~~~~~~~ 177 (397)
T TIGR02389 130 KLEDVAKDISIDLADMTVIIELDEEKLKERGITVDDVLKAIKKAKLGK 177 (397)
T ss_pred CHHHHHCEEEEEEECEEEEEEECHHHHHHCCCCHHHHHHHHHHHHCCE
T ss_conf 332522412488753089994174886306986689999999874642
Done!